locus_tag old_locus_tag gene Name start end strand product note type ID NCBI RB100 RB100 RB100 40726 41097 - hypothetical protein gene gene56 http://www.ncbi.nlm.nih.gov/gene/?term=RB100 RB10002 RB10002 gcd gcd 5387011 5388126 + glucose dehydrogenase Gcd PMID: 8436115 PMID: 2803257 best DB hits: BLAST: gb:AAG18991.1%3B (AE004999) glucose dehydrogenase%3B Gcd%3B E%3D2e-27 pir:T44937%3B glucose 1-dehydrogenase (EC 1.1.1.47) [imported] -%3B E%3D1e-25 pir:S29788%3B glucose 1-dehydrogenase (EC 1.1.1.47) - Thermoplasma%3B E%3D3e-13 COG: VNG0446G%3B COG1063 Threonine dehydrogenase and related Zn-dependent%3B E%3D2e-28 YDL168w%3B COG1062 Zn-dependent alcohol dehydrogenases%2C class III%3B E%3D0.003 XF1727%3B COG1063 Threonine dehydrogenase and related Zn-dependent%3B E%3D0.005 PFAM: PF00107%3B Zinc-binding dehydrogenases%3B E%3D3.1e-22 gene gene5570 http://www.ncbi.nlm.nih.gov/gene/?term=RB10002 RB10004 RB10004 serA serA 5388110 5389189 + phosphoglycerate dehydrogenase SerA2- NAD-dependent 2-hydroxyacid dehydrogenase best DB hits: BLAST: gb:AAG19748.1%3B (AE005060) phosphoglycerate dehydrogenase%3B SerA2%3B E%3D4e-30 swissprot:P45637%3B YPRA_CORGL HYPOTHETICAL 33.0 KD PROTEIN IN%3B E%3D2e-28 pir:T35826%3B probable dehydrogenase - Streptomyces coelicolor -----%3B E%3D5e-26 COG: VNG1437G%3B COG0111 Phosphoglycerate dehydrogenase and related%3B E%3D3e-31 PA2263%3B COG1052 Lactate dehydrogenase and related dehydrogenases%3B E%3D2e-25 MTH970%3B COG0111 Phosphoglycerate dehydrogenase and related%3B E%3D3e-25 PFAM: PF02826%3B D-isomer specific 2-hydroxyacid%3B E%3D3.8e-62 gene gene5571 http://www.ncbi.nlm.nih.gov/gene/?term=RB10004 RB10005 RB10005 RB10005 5389186 5389419 + hypothetical protein gene gene5572 http://www.ncbi.nlm.nih.gov/gene/?term=RB10005 RB10006 RB10006 pdxH pdxH 5389524 5390195 - pyridoxamine oxidase PMID: 1356963 PMID: 7860596 PMID: 9693059 PMID: 10903950 PMID: 1453690 best DB hits: BLAST: ddbj:BAA97018.1%3B (AB024032) contains similarity to pyridoxamine%3B E%3D3e-50 embl:CAB95898.1%3B (AL359988) pyridoxamine oxidase%3B E%3D5e-50 pir:F83513%3B pyridoxine 5'-phosphate oxidase PA1049 [imported] -%3B E%3D1e-49 COG: PA1049%3B COG0259 Pyridoxamine phosphate oxidase%3B E%3D1e-50 PFAM: PF01243%3B Pyridoxamine 5'-phosphate oxi%3B E%3D4.2e-107 gene gene5573 http://www.ncbi.nlm.nih.gov/gene/?term=RB10006 RB10007 RB10007 RB10007 5390130 5391071 + hypothetical protein best DB hits: BLAST: gb:AAF97283.1%3B AC010164_5 (AC010164) Unknown protein [Arabidopsis%3B E%3D0.087 pir:B82584%3B transcriptional regulator XF2228 [imported] - Xylella%3B E%3D0.32 pir:T10016%3B hypothetical protein - Mycobacterium leprae -----%3B E%3D0.64 gene gene5574 http://www.ncbi.nlm.nih.gov/gene/?term=RB10007 RB10009 RB10009 cspG cspG 5391076 5391459 + cold shock-like protein cspI PMID: 8631696 best DB hits: BLAST: swissprot:P77605%3B CSPI_ECOLI COLD SHOCK-LIKE PROTEIN CSPI%3B E%3D0.27 embl:CAA72682.1%3B (Y11932) cspB [Salmonella typhimurium]%3B E%3D0.31 swissprot:Q47130%3B CSPG_ECOLI COLD SHOCK-LIKE PROTEIN CSPG%3B E%3D0.36 PFAM: PF00313%3B 'Cold-shock' DNA-binding domain%3B E%3D6.7e-05 gene gene5575 http://www.ncbi.nlm.nih.gov/gene/?term=RB10009 RB10010 RB10010 RB10010 5391460 5393982 - signal peptide gene gene5576 http://www.ncbi.nlm.nih.gov/gene/?term=RB10010 RB10014 RB10014 RB10014 5393973 5395577 - hypothetical protein best DB hits: PFAM: PF01676%3B Metalloenzyme superfamily%3B E%3D0.19 gene gene5577 http://www.ncbi.nlm.nih.gov/gene/?term=RB10014 RB10018 RB10018 RB10018 5395605 5396468 + hypothetical protein gene gene5578 http://www.ncbi.nlm.nih.gov/gene/?term=RB10018 RB10019 RB10019 RB10019 5396392 5396559 + hypothetical protein gene gene5579 http://www.ncbi.nlm.nih.gov/gene/?term=RB10019 RB1002 RB1002 RB1002 525099 527222 + hypothetical protein gene gene539 http://www.ncbi.nlm.nih.gov/gene/?term=RB1002 RB10020 RB10020 RB10020 5396594 5396788 - hypothetical protein gene gene5580 http://www.ncbi.nlm.nih.gov/gene/?term=RB10020 RB10021 RB10021 RB10021 5396777 5396923 + hypothetical protein gene gene5581 http://www.ncbi.nlm.nih.gov/gene/?term=RB10021 RB10022 RB10022 RB10022 5396916 5397413 + hypothetical protein gene gene5582 http://www.ncbi.nlm.nih.gov/gene/?term=RB10022 RB10023 RB10023 RB10023 5397477 5398001 + hypothetical protein gene gene5583 http://www.ncbi.nlm.nih.gov/gene/?term=RB10023 RB10024 RB10024 RB10024 5397998 5398270 - hypothetical protein gene gene5584 http://www.ncbi.nlm.nih.gov/gene/?term=RB10024 RB10025 RB10025 RB10025 5398325 5399254 - protease best DB hits: BLAST: pir:D83031%3B conserved hypothetical protein PA4926 [imported] -%3B E%3D4e-49 swissprot:Q50652%3B YP69_MYCTU HYPOTHETICAL 34.4 KDA PROTEIN RV2569C%3B E%3D2e-32 embl:CAA19100.1%3B (AL023591) hypothetical protein MLCB1259.25%3B E%3D4e-32 COG: PA4926%3B COG1305 transglutaminases%2C cysteine%3B E%3D4e-50 PFAM: PF01841%3B Transglutaminase-like superfam%3B E%3D1.6e-20 gene gene5585 http://www.ncbi.nlm.nih.gov/gene/?term=RB10025 RB10026 RB10026 RB10026 5399251 5401902 - hypothetical protein best DB hits: BLAST: pir:E83031%3B conserved hypothetical protein PA4927 [imported] -%3B E%3D1e-107 embl:CAA17945.1%3B (AL022118) hypothetical protein MLCB1913.13%3B E%3D1e-94 swissprot:Q50654%3B YP67_MYCTU HYPOTHETICAL 95.4 KDA PROTEIN RV2567%3B E%3D4e-88 COG: PA4927_1%3B COG2308 Uncharacterized BCR%3B E%3D4e-78 PA4927_2%3B COG2307 Uncharacterized BCR%3B E%3D4e-23 gene gene5586 http://www.ncbi.nlm.nih.gov/gene/?term=RB10026 RB10027 RB10027 RB10027 5402078 5405425 - protease best DB hits: BLAST: pir:B70729%3B hypothetical protein Rv2566 - Mycobacterium tuberculosis%3B E%3D0.0 gb:AAD10833.1%3B (U49838) 72.2 KDa protein [Mycobacterium leprae]%3B E%3D1e-174 embl:CAA17944.1%3B (AL022118) hypothetical protein MLCB1913.12%3B E%3D1e-110 COG: Rv2566_1%3B COG1305 transglutaminases%2C cysteine%3B E%3D6e-81 PFAM: PF01841%3B Transglutaminase-like superfam%3B E%3D2.7e-17 gene gene5587 http://www.ncbi.nlm.nih.gov/gene/?term=RB10027 RB10028 RB10028 RB10028 5405422 5406468 - hypothetical protein best DB hits: BLAST: pir:S74601%3B hypothetical protein sll1039 - Synechocystis sp. (strain%3B E%3D2e-67 gb:AAC08422.1%3B (AF054525) hypothetical protein [Synechococcus sp.%3B E%3D1e-61 pir:B75323%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D1e-35 COG: sll1039%3B COG2307 Uncharacterized BCR%3B E%3D2e-68 gene gene5588 http://www.ncbi.nlm.nih.gov/gene/?term=RB10028 RB10030 RB10030 RB10030 5406484 5408100 - hypothetical protein best DB hits: BLAST: swissprot:Q55587%3B Y335_SYNY3 HYPOTHETICAL 53.7 KDA PROTEIN SLL0335%3B E%3D1e-169 gb:AAC08421.1%3B (AF054525) hypothetical protein [Synechococcus sp.%3B E%3D1e-160 pir:C83429%3B conserved hypothetical protein PA1730 [imported] -%3B E%3D1e-135 COG: sll0335%3B COG2308 Uncharacterized BCR%3B E%3D1e-170 gene gene5589 http://www.ncbi.nlm.nih.gov/gene/?term=RB10030 RB10032 RB10032 RB10032 5408110 5408328 - signal peptide gene gene5590 http://www.ncbi.nlm.nih.gov/gene/?term=RB10032 RB10033 RB10033 RB10033 5408291 5409271 - hypothetical protein gene gene5591 http://www.ncbi.nlm.nih.gov/gene/?term=RB10033 RB10035 RB10035 RB10035 5409226 5410980 + membrane bound PQQ-employing oxidoreductase best DB hits: BLAST: gb:AAG31169.1%3B (AF314961) unknown [Salmonella typhimurium]%3B E%3D0.23 pir:C82804%3B conserved hypothetical protein XF0464 [imported] -%3B E%3D0.79 PFAM: PF01011%3B PQQ enzyme repeat%3B E%3D0.016 gene gene5592 http://www.ncbi.nlm.nih.gov/gene/?term=RB10035 RB10036 RB10036 RB10036 5410896 5411729 + hypothetical protein best DB hits: BLAST: embl:CAA77139.1%3B (Y18353) hypothetical protein [Thermus%3B E%3D2e-29 swissprot:P42981%3B YPJG_BACSU HYPOTHETICAL 24.8 KD PROTEIN IN%3B E%3D1e-24 ddbj:BAB05401.1%3B (AP001512) BH1682~~unknown conserved protein%3B E%3D3e-23 COG: DR2363a%3B COG2120 Uncharacterized proteins%2C LmbE homologs%3B E%3D9e-32 PFAM: PF02585%3B Uncharacterized LmbE-like protein%2C C%3B E%3D4.6e-12 gene gene5593 http://www.ncbi.nlm.nih.gov/gene/?term=RB10036 RB10038 RB10038 RB10038 5411815 5413245 + hypothetical protein gene gene5594 http://www.ncbi.nlm.nih.gov/gene/?term=RB10038 RB10039 RB10039 RB10039 5413242 5414639 - hypothetical protein best DB hits: BLAST: gb:AAF31458.1%3B (AF223393) HRNT1 [Homo sapiens]%3B E%3D0.31 pir:B70374%3B conserved hypothetical protein aq_854 - Aquifex aeolicus%3B E%3D0.47 pir:A72220%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D0.11 COG: PA5257%3B COG3071 Uncharacterized enzyme of heme biosynthesis%3B E%3D0.007 PFAM: PF00515%3B TPR Domain%3B E%3D2.9e-05 gene gene5595 http://www.ncbi.nlm.nih.gov/gene/?term=RB10039 RB10040 RB10040 mtrA mtrA 5414632 5415855 - c-type cytochrome precursor best DB hits: BLAST: gb:AAD05531.1%3B (AF083240) c-type cytochrome precursor [Shewanella%3B E%3D1e-04 gb:AAD05534.1%3B (AF083240) deca-heme c-type cytochrome [Shewanella%3B E%3D0.001 gene gene5596 http://www.ncbi.nlm.nih.gov/gene/?term=RB10040 RB10042 RB10042 RB10042 5415822 5416031 + signal peptide gene gene5597 http://www.ncbi.nlm.nih.gov/gene/?term=RB10042 RB10043 RB10043 RB10043 5415836 5416018 - signal peptide gene gene5598 http://www.ncbi.nlm.nih.gov/gene/?term=RB10043 RB10044 RB10044 RB10044 5416038 5416154 + hypothetical protein gene gene5599 http://www.ncbi.nlm.nih.gov/gene/?term=RB10044 RB10045 RB10045 RB10045 5416167 5417477 - hypothetical protein best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene5600 http://www.ncbi.nlm.nih.gov/gene/?term=RB10045 RB10046 RB10046 RB10046 5417577 5417801 - hypothetical protein gene gene5601 http://www.ncbi.nlm.nih.gov/gene/?term=RB10046 RB10047 RB10047 RB10047 5417619 5417843 + hypothetical protein gene gene5602 http://www.ncbi.nlm.nih.gov/gene/?term=RB10047 RB10048 RB10048 RB10048 5417850 5419478 - sialic acid-specific 9-O-acetylesterase PMID: 97078679 best DB hits: BLAST: embl:CAA67214.1%3B (X98625) sialic acid-specific 9-O-acetylesterase%3B E%3D1e-32 gb:AAB07813.1%3B (U40408) sialic-acid O-acetylesterase [Mus%3B E%3D2e-32 gb:AAD55976.1%3B (AF156856) cytosolic sialic acid%3B E%3D2e-29 gene gene5603 http://www.ncbi.nlm.nih.gov/gene/?term=RB10048 RB10049 RB10049 RB10049 5419507 5420160 + alternative sigma factor AlgU PMID: 8052622 best DB hits: BLAST: gb:AAF18265.1%3B U22895_1 (U22895) alternative sigma factor AlgU%3B E%3D2e-04 gb:AAF01335.1%3B AF190580_1 (AF190580) alternate sigma factor AlgT%3B E%3D8e-04 gb:AAC98488.1%3B (AF049107) ECF sigma factor RpoE1%3B E%3D0.001 COG: PA0762%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D3e-04 PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D3.1e-05 PF00140%3B Sigma-70 factor%3B E%3D0.6 gene gene5604 http://www.ncbi.nlm.nih.gov/gene/?term=RB10049 RB1005 RB1005 RB1005 527260 528696 - glycosyltransferase PMID: 11016950 best DB hits: BLAST: gb:AAG18863.1%3B (AE004989) Vng0271c [Halobacterium sp. NRC-1]%3B E%3D7e-30 gb:AAG45169.1%3B AF317883_1 (AF317883) unknown [Synechococcus sp.%3B E%3D8e-20 pir:T45180%3B hypothetical protein u1756l [imported] - Mycobacterium%3B E%3D0.026 COG: VNG0271C%3B COG0463 Glycosyltransferases involved in cell wall%3B E%3D7e-31 gene gene540 http://www.ncbi.nlm.nih.gov/gene/?term=RB1005 RB10051 RB10051 RB10051 5420157 5423789 + hypothetical protein gene gene5605 http://www.ncbi.nlm.nih.gov/gene/?term=RB10051 RB10053 RB10053 RB10053 5423854 5425344 + hypothetical protein gene gene5606 http://www.ncbi.nlm.nih.gov/gene/?term=RB10053 RB10055 RB10055 RB10055 5425334 5426716 - Cap5J protein- transmembraneprotein best DB hits: BLAST: gb:AAC46093.1%3B (U81973) Cap5J [Staphylococcus aureus]%3B E%3D0.32 gene gene5607 http://www.ncbi.nlm.nih.gov/gene/?term=RB10055 RB10060 RB10060 RB10060 5426810 5427139 + transcriptional regulator best DB hits: BLAST: pir:A70799%3B probable transcriptional regulator Rv3744 -%3B E%3D4e-07 pir:A75601%3B transcription repressor SmtB - Deinococcus radiodurans%3B E%3D8e-07 swissprot:P37374%3B CADF_STAAU CADMIUM EFFLUX SYSTEM ACCESSORY%3B E%3D1e-06 COG: Rv3744%3B COG0640 Predicted transcriptional regulators%3B E%3D5e-08 PFAM: PF01022%3B Bacterial regulatory protein%2C arsR f%3B E%3D3.5e-19 gene gene5608 http://www.ncbi.nlm.nih.gov/gene/?term=RB10060 RB10061 RB10061 RB10061 5427236 5428342 + hypothetical protein best DB hits: BLAST: ddbj:BAB04085.1%3B (AP001508) BH0366~~unknown conserved protein in%3B E%3D1e-09 embl:CAC28817.1%3B (AL513466) conserved hypothetical protein%3B E%3D7e-08 pir:D82449%3B conserved hypothetical protein VCA0527 [imported] -%3B E%3D3e-07 COG: BH0366%3B COG0523 GTPases (G3E family)%3B E%3D9e-11 sll1079%3B COG0378 Urease/hydrogenase-associated predicted GTPases%3B E%3D0.004 CT418%3B COG0536 Predicted GTPase%3B E%3D0.004 PFAM: PF01443%3B Viral (Superfamily 1) RNA hel%3B E%3D0.53 PF01583%3B Adenylylsulfate kinase%3B E%3D0.7 PF02223%3B Thymidylate kinase%3B E%3D0.0067 gene gene5609 http://www.ncbi.nlm.nih.gov/gene/?term=RB10061 RB10062 RB10062 RB10062 5428367 5429641 - hydroxyglutarate oxidase catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate gene gene5610 http://www.ncbi.nlm.nih.gov/gene/?term=RB10062 RB10065 RB10065 RB10065 5429784 5431103 + phosphohydrolase involved in signal transduction best DB hits: BLAST: ddbj:BAA82692.1%3B (AB013492) ORF14 [Bacillus halodurans] -----%3B E%3D4e-20 pir:D83132%3B hypothetical protein PA4108 [imported] - Pseudomonas%3B E%3D4e-17 pir:E71268%3B conserved hypothetical protein TP0912 - syphilis%3B E%3D4e-15 COG: BH0008%3B COG2206 HD-GYP domain%3B E%3D4e-21 gene gene5611 http://www.ncbi.nlm.nih.gov/gene/?term=RB10065 RB10067 RB10067 RB10067 5431121 5433625 - hypothetical protein gene gene5612 http://www.ncbi.nlm.nih.gov/gene/?term=RB10067 RB10069 RB10069 RB10069 5433573 5434046 - lipoprotein gene gene5613 http://www.ncbi.nlm.nih.gov/gene/?term=RB10069 RB10074 RB10074 RB10074 5434250 5435071 - SAM-dependent methyltransferase best DB hits: BLAST: pir:G69742%3B hypothetical protein ybaJ - Bacillus subtilis -----%3B E%3D7e-13 pir:E83313%3B conserved hypothetical protein PA2650 [imported] -%3B E%3D9e-12 pir:S76919%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D6e-04 COG: BS_ybaJ%3B COG0500 SAM-dependent methyltransferases%3B E%3D7e-14 XF2471%3B COG2227%3B E%3D0.004 gene gene5614 http://www.ncbi.nlm.nih.gov/gene/?term=RB10074 RB10075 RB10075 RB10075 5435202 5436659 + hypothetical protein gene gene5615 http://www.ncbi.nlm.nih.gov/gene/?term=RB10075 RB10077 RB10077 RB10077 5436817 5437083 + lipoprotein gene gene5616 http://www.ncbi.nlm.nih.gov/gene/?term=RB10077 RB10078 RB10078 RB10078 5437154 5439220 - hypothetical protein best DB hits: BLAST: pir:G82627%3B hypothetical protein XF1887 [imported] - Xylella%3B E%3D1e-40 PFAM: PF00949%3B Flavivirus helicase (NS3)%3B E%3D0.44 PF00089%3B Trypsin%3B E%3D0.59 PF00571%3B CBS domain%3B E%3D0.31 gene gene5617 http://www.ncbi.nlm.nih.gov/gene/?term=RB10078 RB10081 RB10081 RB10081 5439311 5441353 - ABC transporter ATP-binding protein best DB hits: BLAST: pir:G69815%3B ABC transporter (ATP-binding protein) homolog ygaD -%3B E%3D6e-66 gb:AAG49002.1%3B (AY013246) ABC transporter [Hordeum%3B E%3D4e-63 pir:A75590%3B ABC transporter ATP-binding protein - Deinococcus%3B E%3D6e-63 COG: BS_ygaD%3B COG1132 ABC-type multidrug/protein/lipid transport system%2C%3B E%3D6e-67 PFAM: PF00664%3B ABC transporter transmembrane re%3B E%3D8.5e-30 PF02463%3B SMC domain N terminal domain%3B E%3D0.53 PF01202%3B Shikimate kinase%3B E%3D0.019 gene gene5618 http://www.ncbi.nlm.nih.gov/gene/?term=RB10081 RB10085 RB10085 RB10085 5441648 5442409 + hypothetical protein gene gene5619 http://www.ncbi.nlm.nih.gov/gene/?term=RB10085 RB10088 RB10088 RB10088 5442529 5443422 + heme peroxidase best DB hits: BLAST: ddbj:BAB07544.1%3B (AP001520) BH3825~~unknown conserved protein%3B E%3D7e-27 swissprot:P39645%3B YWFI_BACSU HYPOTHETICAL 29.5 KD PROTEIN IN%3B E%3D5e-24 gb:AAG20186.1%3B (AE005095) Vng2021c [Halobacterium sp. NRC-1]%3B E%3D7e-24 COG: BH3825%3B COG3253 Uncharacterized ACR%3B E%3D7e-28 gene gene5620 http://www.ncbi.nlm.nih.gov/gene/?term=RB10088 RB10089 RB10089 RB10089 5443485 5444303 - hypothetical protein best DB hits: BLAST: embl:CAB66289.1%3B (AL136519) hypothetical protein SCC57A.21c.%3B E%3D3e-19 swissprot:P42419%3B IOLI_BACSU IOLI PROTEIN ----- pir: A69646%3B E%3D4e-07 ddbj:BAB06034.1%3B (AP001515) myo-inositol catabolism [Bacillus%3B E%3D1e-06 COG: BS_iolI%3B COG1082 Predicted endonucleases%3B E%3D4e-08 PFAM: PF01542%3B Hepatitis C virus core protei%3B E%3D0.23 gene gene5621 http://www.ncbi.nlm.nih.gov/gene/?term=RB10089 RB1009 RB1009 RB1009 528696 529694 + response regulator PMID: 11123673 best DB hits: BLAST: pir:A75484%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D2e-24 pir:D72252%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D1e-23 embl:CAB89843.1%3B (AJ251547) response regulator [Xanthomonas%3B E%3D2e-23 COG: DR0719%3B COG2206 HD-GYP domain%3B E%3D2e-25 PFAM: PF01966%3B HD domain%3B E%3D7.2e-08 gene gene541 http://www.ncbi.nlm.nih.gov/gene/?term=RB1009 RB10092 RB10092 RB10092 5444432 5445460 + 2-keto-4-pentenoate hydratase best DB hits: BLAST: ref:XP_002773.1%3B CGI-105 protein [Homo sapiens]%3B E%3D4e-56 gb:AAD34100.1%3B AF151863_1 (AF151863) CGI-105 protein [Homo%3B E%3D6e-56 gb:AAF55945.1%3B (AE003737) CG6028 gene product [Drosophila%3B E%3D3e-54 COG: BH2000%3B COG0179 2-keto-4-pentenoate%3B E%3D1e-45 PFAM: PF01557%3B Fumarylacetoacetate (FAA) hydro%3B E%3D5.1e-83 gene gene5622 http://www.ncbi.nlm.nih.gov/gene/?term=RB10092 RB10096 RB10096 RB10096 5445866 5446891 - transposase best DB hits: BLAST: gb:AAC09305.1%3B (AF047044) transposase [Nostoc sp. PCC%3B E%3D2e-41 pir:A32816%3B hypothetical protein%2C 33K - Pseudomonas atlantica%3B E%3D7e-35 pir:B81886%3B probable transposase NMA1185 [imported] - Neisseria%3B E%3D1e-30 PFAM: PF01548%3B Transposase%3B E%3D2.2e-05 PF02371%3B Transposase IS116/IS110/IS902%3B E%3D1.3e-25 gene gene5623 http://www.ncbi.nlm.nih.gov/gene/?term=RB10096 RB10097 RB10097 RB10097 5446658 5447284 + hypothetical protein gene gene5624 http://www.ncbi.nlm.nih.gov/gene/?term=RB10097 RB10098 RB10098 RB10098 5447310 5447453 + hypothetical protein gene gene5625 http://www.ncbi.nlm.nih.gov/gene/?term=RB10098 RB10099 RB10099 RB10099 5447566 5448546 + hypothetical protein best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene5626 http://www.ncbi.nlm.nih.gov/gene/?term=RB10099 RB101 RB101 RB101 41251 44415 - acylaminoacyl peptidase PMID: 2691504 best DB hits: BLAST: pir:H75007%3B probable acylaminoacyl-peptidase (EC 3.4.19.1) PAB1300%3B E%3D6e-18 pir:G82543%3B conserved hypothetical protein XF2551 [imported] - Xylella%3B E%3D1e-16 pir:C71137%3B hypothetical protein PH0863 - Pyrococcus horikoshii%3B E%3D7e-16 COG: PAB1300%3B COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases%3B E%3D5e-19 VNG2302G%3B COG1506 Dipeptidyl%3B E%3D2e-08 APE1832%3B COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases%3B E%3D3e-08 PFAM: PF01748%3B Domain of unknown function DUF3%3B E%3D0.37 PF00326%3B Prolyl oligopeptidase%3B E%3D0.042 gene gene57 http://www.ncbi.nlm.nih.gov/gene/?term=RB101 RB1010 RB1010 RB1010 529655 530116 + hypothetical protein gene gene542 http://www.ncbi.nlm.nih.gov/gene/?term=RB1010 RB10100 RB10100 RB10100 5448543 5449025 + lipoprotein gene gene5627 http://www.ncbi.nlm.nih.gov/gene/?term=RB10100 RB10103 RB10103 RB10103 5449143 5450834 + hypothetical protein PMID: 10888605 best DB hits: BLAST: gb:AAF81717.1%3B AF252281_1 (AF252281) Kelch-like 1 protein [Mus%3B E%3D2e-09 gb:AAD39007.1%3B AF156857_1 (AF156857) actin-binding protein [Homo%3B E%3D3e-09 gb:AAK00278.1%3B AF285178_1 (AF285178) actin-binding protein MIPP%3B E%3D3e-08 COG: HI0148%3B COG3055 Uncharacterized BCR%3B E%3D9e-06 PFAM: PF01344%3B Kelch motif%3B E%3D0.0021 gene gene5628 http://www.ncbi.nlm.nih.gov/gene/?term=RB10103 RB10105 RB10105 RB10105 5450855 5451202 - hypothetical protein gene gene5629 http://www.ncbi.nlm.nih.gov/gene/?term=RB10105 RB10106 RB10106 cutA cutA 5451244 5451624 - periplasmic divalent cation tolerance protein (cutA) best DB hits: BLAST: gb:AAF48350.1%3B (AE003495) CG11590 gene product [Drosophila%3B E%3D7e-12 gb:AAB89277.1%3B (AE000966) periplasmic divalent cation tolerance%3B E%3D2e-11 pir:C69068%3B divalent cation tolerance protein - Methanobacterium%3B E%3D2e-11 COG: AF1978%3B COG1324 Uncharacterized protein involved in tolerance to%3B E%3D2e-12 gene gene5630 http://www.ncbi.nlm.nih.gov/gene/?term=RB10106 RB10107 RB10107 RB10107 5451724 5451876 - hypothetical protein gene gene5631 http://www.ncbi.nlm.nih.gov/gene/?term=RB10107 RB10108 RB10108 dnaN dnaN 5451913 5453247 + DNA polymerase III%2C beta chain PMID: 2540413 best DB hits: BLAST: swissprot:P13455%3B DP3B_PSEPU DNA POLYMERASE III%2C BETA CHAIN%3B E%3D1e-31 pir:C81713%3B DNA polymerase III%2C beta chain TC0347 [imported] -%3B E%3D1e-29 pir:E71559%3B probable DNA pol III (beta chain) - Chlamydia%3B E%3D1e-29 COG: CT075%3B COG0592 DNA polymerase III beta subunit%3B E%3D1e-30 PFAM: PF00712%3B DNA polymerase III beta subun%3B E%3D7.1e-16 PF02767%3B DNA polymerase III beta subun%3B E%3D2.4e-12 PF02768%3B DNA polymerase III beta subun%3B E%3D1e-10 gene gene5632 http://www.ncbi.nlm.nih.gov/gene/?term=RB10108 RB10109 RB10109 RB10109 5453244 5453639 + hypothetical protein best DB hits: BLAST: pir:D72328%3B hypothetical protein - Thermotoga maritima (strain MSB8)%3B E%3D0.18 gene gene5633 http://www.ncbi.nlm.nih.gov/gene/?term=RB10109 RB10112 RB10112 hisF hisF 5453942 5454730 + imidazole glycerol phosphate synthase subunit HisF PMID: 2664449 PMID: 3062174 PMID: 8494895 best DB hits: BLAST: swissprot:P26721%3B HIS6_AZOBR HISF PROTEIN (CYCLASE) ----- pir:%3B E%3D6e-87 swissprot:O66567%3B HIS6_AQUAE HISF PROTEIN (CYCLASE) ----- pir:%3B E%3D1e-84 pir:H83002%3B imidazoleglycerol-phosphate synthase%2C cyclase subunit%3B E%3D2e-84 COG: aq_181%3B COG0107 Imidazoleglycerol-phosphate synthase%3B E%3D1e-85 PFAM: PF01791%3B Deoxyribose-phosphate aldolase%3B E%3D0.43 PF00977%3B Histidine biosynthesis protein%3B E%3D1.9e-135 gene gene5634 http://www.ncbi.nlm.nih.gov/gene/?term=RB10112 RB10113 RB10113 purH purH 5454845 5456416 + bifunctional purine biosynthesis protein purH PMID: 3036807 best DB hits: BLAST: swissprot:P12048%3B PUR9_BACSU BIFUNCTIONAL PURINE BIOSYNTHESIS%3B E%3D1e-125 ddbj:BAB04352.1%3B (AP001509)%3B E%3D1e-124 gb:AAF33520.1%3B (AF170176) Salmonella typhimurium%3B E%3D1e-118 COG: BS_purH%3B COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only%3B E%3D1e-126 purH%3B COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP%3B E%3D1e-119 HI0887%3B COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only%3B E%3D1e-118 PFAM: PF02142%3B MGS-like domain%3B E%3D2.2e-46 PF01808%3B AICARFT/IMPCHase bienzyme%3B E%3D1.3e-113 gene gene5635 http://www.ncbi.nlm.nih.gov/gene/?term=RB10113 RB10114 RB10114 trpC trpC 5456435 5457214 + indole-3-glycerol phosphate synthase PMID: 1896020 PMID: 7007653 PMID: 6355484 best DB hits: BLAST: swissprot:P26938%3B TRPC_AZOBR INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE%3B E%3D6e-55 swissprot:P94327%3B TRPC_BRAJA INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE%3B E%3D3e-52 swissprot:Q9ZFA7%3B TRPC_RHOSH INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE%3B E%3D2e-51 COG: XF0213%3B COG0134 Indole-3-glycerol phosphate synthase%3B E%3D5e-51 PFAM: PF00218%3B Indole-3-glycerol phosphate synthase%3B E%3D2.6e-111 gene gene5636 http://www.ncbi.nlm.nih.gov/gene/?term=RB10114 RB10115 RB10115 RB10115 5457222 5457395 + hypothetical protein gene gene5637 http://www.ncbi.nlm.nih.gov/gene/?term=RB10115 RB10116 RB10116 arsA arsA 5457531 5459000 + arylsulfatase PMID: 7910580 PMID: 1572648 best DB hits: BLAST: embl:CAA36398.1%3B (X52150) arylsulphatase a [Homo sapiens]%3B E%3D4e-61 gb:AAB03341.1%3B (U62317) arylsulfatase A [Homo sapiens]%3B E%3D4e-61 pdb:1E2S%3B P Chain P%2C Crystal Structure Of An Arylsulfatase A%3B E%3D4e-60 COG: PA0183%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D5e-33 PFAM: PF00884%3B Sulfatase%3B E%3D3.7e-106 gene gene5638 http://www.ncbi.nlm.nih.gov/gene/?term=RB10116 RB10117 RB10117 atsG atsG 5458976 5460400 + sulfatase atsG PMID: 10950929 PMID: 7910580 best DB hits: BLAST: pir:F70837%3B probable sulfatase (EC 3.1.6.-) atsG - Mycobacterium%3B E%3D9e-28 gb:AAG41945.1%3B AF304053_1 (AF304053) heparan N-sulfatase [Mus%3B E%3D5e-25 gb:AAF29467.1%3B (AF156255) N-sulfoglucosamine sulfohydrolase [Mus%3B E%3D6e-25 COG: Rv0296c%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D8e-29 TM1703%3B COG1368 Phosphoglycerol transferase and related proteins%2C%3B E%3D0.008 PFAM: PF00884%3B Sulfatase%3B E%3D4e-22 gene gene5639 http://www.ncbi.nlm.nih.gov/gene/?term=RB10117 RB10119 RB10119 pknB pknB 5460423 5462723 - serine/threonine-protein kinase pknB best DB hits: BLAST: swissprot:P54744%3B PKNB_MYCLE SERINETHREONINE-PROTEIN%3B E%3D9e-38 pir:H69878%3B probable protein kinase (EC 2.7.1.-) yloP - Bacillus%3B E%3D3e-37 ddbj:BAB06223.1%3B (AP001515) serinethreonine protein kinase%3B E%3D7e-37 COG: BS_yloP_1%3B COG0515 Serine/threonine protein kinases%3B E%3D2e-38 PFAM: PF00069%3B Protein kinase domain%3B E%3D2.1e-52 gene gene5640 http://www.ncbi.nlm.nih.gov/gene/?term=RB10119 RB1012 RB1012 RB1012 530176 530328 + hypothetical protein gene gene543 http://www.ncbi.nlm.nih.gov/gene/?term=RB1012 RB10120 RB10120 rpoE rpoE 5462708 5463364 - RNA polymerase sigma-E factor PMID: 7768826 PMID: 7889934 PMID: 7889935 best DB hits: BLAST: pir:H82073%3B RNA polymerase sigma-E factor VC2467 [imported] - Vibrio%3B E%3D1e-05 swissprot:P44790%3B RPOE_HAEIN RNA POLYMERASE SIGMA-E FACTOR%3B E%3D9e-05 pir:C82583%3B RNA polymerase sigma-H factor XF2239 [imported] -%3B E%3D3e-04 COG: VC2467%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D1e-06 PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D0.0054 PF00140%3B Sigma-70 factor%3B E%3D2.7e-05 gene gene5641 http://www.ncbi.nlm.nih.gov/gene/?term=RB10120 RB10123 RB10123 RB10123 5463443 5463661 + hypothetical protein gene gene5642 http://www.ncbi.nlm.nih.gov/gene/?term=RB10123 RB10124 RB10124 RB10124 5463645 5465093 + polyvinylalcohol dehydrogenase best DB hits: BLAST: pir:A82580%3B polyvinylalcohol dehydrogenase XF2259 [imported] -%3B E%3D0.003 pir:H69064%3B serinethreonine protein kinase related protein -%3B E%3D0.013 pir:C83171%3B conserved hypothetical protein PA3800 [imported] -%3B E%3D0.14 COG: XF2259%3B COG1520 Uncharacterized proteins of WD40-like repeat family%3B E%3D3e-04 PFAM: PF01011%3B PQQ enzyme repeat%3B E%3D0.0033 gene gene5643 http://www.ncbi.nlm.nih.gov/gene/?term=RB10124 RB10125 RB10125 RB10125 5465077 5465187 + hypothetical protein gene gene5644 http://www.ncbi.nlm.nih.gov/gene/?term=RB10125 RB10126 RB10126 RB10126 5465210 5465341 + hypothetical protein gene gene5645 http://www.ncbi.nlm.nih.gov/gene/?term=RB10126 RB10127 RB10127 RB10127 5465320 5466726 - protein up-regulated by thyroid hormone- PQQ-dependent glucose dehydrogenase PMID: 8700860 PMID: 3399393 best DB hits: BLAST: gb:AAC59865.1%3B (U37373) up-regulated by thyroid hormone in%3B E%3D9e-60 ddbj:BAB14717.1%3B (AK023902) unnamed protein product [Homo%3B E%3D6e-59 pir:A58519%3B hypothetical 345 protein - Streptomyces coelicolor%3B E%3D5e-42 COG: slr1608%3B COG2133 Glucose/sorbosone dehydrogenases%3B E%3D1e-22 gene gene5646 http://www.ncbi.nlm.nih.gov/gene/?term=RB10127 RB10129 RB10129 mip mip 5466713 5467429 - macrophage infectivity potentiator PMID: 9350870 PMID: 2925252 PMID: 1379319 PMID: 7516906 best DB hits: BLAST: gb:AAC45700.1%3B (U92214) macrophage infectivity potentiator%3B E%3D4e-36 gb:AAC45696.1%3B (U92229) macrophage infectivity potentiator%3B E%3D4e-35 gb:AAC45668.1%3B (U91606) macrophage infectivity potentiator%3B E%3D5e-35 COG: PA3262%3B COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1%3B E%3D1e-33 PFAM: PF01346%3B Domain amino terminal to FKBP-type p%3B E%3D7.4e-14 PF00254%3B FKBP-type peptidyl-prolyl cis-trans%3B E%3D2e-48 gene gene5647 http://www.ncbi.nlm.nih.gov/gene/?term=RB10129 RB1013 RB1013 RB1013 530325 534392 - hypothetical protein PMID: 9384377 best DB hits: BLAST: pir:H69818%3B conserved hypothetical protein yhaN - Bacillus subtilis%3B E%3D7e-08 gb:AAC44802.1%3B (U21636) unknown [Staphylococcus aureus]%3B E%3D4e-06 pir:F72363%3B hypothetical protein - Thermotoga maritima (strain MSB8)%3B E%3D0.005 gene gene544 http://www.ncbi.nlm.nih.gov/gene/?term=RB1013 RB10133 RB10133 pknH pknH 5467814 5468908 - serine/threonine-protein kinase pknH best DB hits: BLAST: swissprot:Q11053%3B PKNH_MYCTU PROBABLE SERINETHREONINE-PROTEIN%3B E%3D3e-35 embl:CAB94054.1%3B (AL358672) serinethreonine-protein%3B E%3D1e-34 embl:CAA10713.1%3B (AJ132604) hypothetical protein [Lactococcus%3B E%3D2e-33 COG: Rv1266c%3B COG0515 Serine/threonine protein kinases%3B E%3D3e-36 PFAM: PF00069%3B Protein kinase domain%3B E%3D7.6e-54 gene gene5648 http://www.ncbi.nlm.nih.gov/gene/?term=RB10133 RB10134 RB10134 RB10134 5468929 5469243 - 50S ribosomal protein L21 best DB hits: BLAST: gb:AAK05177.1%3B AE006340_10 (AE006340) 50S ribosomal protein L21%3B E%3D4e-10 pir:F82920%3B ribosomal protein L21 UU212 [imported] - Ureaplasma%3B E%3D3e-11 gb:AAC35614.1%3B (AF041468) ribosomal protein L21 [Guillardia%3B E%3D3e-10 COG: Rv2442c%3B COG0261 Ribosomal protein L21%3B E%3D3e-07 PFAM: PF00829%3B Ribosomal prokaryotic L21 prot%3B E%3D2.2e-36 gene gene5649 http://www.ncbi.nlm.nih.gov/gene/?term=RB10134 RB10135 RB10135 RB10135 5469167 5469418 - hypothetical protein gene gene5650 http://www.ncbi.nlm.nih.gov/gene/?term=RB10135 RB10136 RB10136 RB10136 5469419 5469577 + hypothetical protein gene gene5651 http://www.ncbi.nlm.nih.gov/gene/?term=RB10136 RB10137 RB10137 RB10137 5469551 5469772 - hypothetical protein gene gene5652 http://www.ncbi.nlm.nih.gov/gene/?term=RB10137 RB10138 RB10138 RB10138 5469878 5470681 - membrane lipoprotein best DB hits: BLAST: pir:T34929%3B hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces%3B E%3D0.018 gene gene5653 http://www.ncbi.nlm.nih.gov/gene/?term=RB10138 RB10139 RB10139 RB10139 5470782 5471021 - hypothetical protein gene gene5654 http://www.ncbi.nlm.nih.gov/gene/?term=RB10139 RB10140 RB10140 RB10140 5471107 5472927 + sulfate permease best DB hits: BLAST: pir:B82127%3B sulfate permease VC2031 [imported] -%3B E%3D1e-89 pir:G83325%3B probable sulfate transporter PA2563 [imported] -%3B E%3D5e-53 ddbj:BAB04133.1%3B (AP001508) sulfate permease [Bacillus%3B E%3D1e-51 COG: VC2031%3B COG0659 Sulfate permease and related transporters (MFS%3B E%3D1e-90 PFAM: PF00916%3B Sulfate transporter family%3B E%3D9.5e-12 PF00955%3B HCO3- transporter family%3B E%3D0.86 PF00916%3B Sulfate transporter family%3B E%3D4.5e-54 gene gene5655 http://www.ncbi.nlm.nih.gov/gene/?term=RB10140 RB10141 RB10141 RB10141 5472900 5473064 - hypothetical protein gene gene5656 http://www.ncbi.nlm.nih.gov/gene/?term=RB10141 RB10142 RB10142 RB10142 5473137 5474159 + signal peptide gene gene5657 http://www.ncbi.nlm.nih.gov/gene/?term=RB10142 RB10144 RB10144 RB10144 5474239 5475198 + endo-1%2C4-beta-xylanase B PMID: 1909424 best DB hits: BLAST: swissprot:P26223%3B XYNB_BUTFI ENDO-1%2C4-BETA-XYLANASE B (XYLANASE B)%3B E%3D2e-18 prf:1718306A%3B xylanase [Butyrivibrio fibrisolvens]%3B E%3D2e-18 gb:AAK04528.1%3B AE006280_4 (AE006280) sugar hydrolase [Lactococcus%3B E%3D1e-17 COG: DR0821_2%3B COG0657 Acetyl esterase%3B E%3D6e-06 DR0165%3B COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases%3B E%3D0.004 PFAM: PF01738%3B Dienelactone hydrolase%3B E%3D0.81 PF00561%3B alpha/beta hydrolase fold%3B E%3D0.0016 gene gene5658 http://www.ncbi.nlm.nih.gov/gene/?term=RB10144 RB10145 RB10145 RB10145 5475236 5476630 - signal peptide gene gene5659 http://www.ncbi.nlm.nih.gov/gene/?term=RB10145 RB10146 RB10146 RB10146 5476557 5476874 - hypothetical protein gene gene5660 http://www.ncbi.nlm.nih.gov/gene/?term=RB10146 RB10148 RB10148 RB10148 5476994 5477758 - signal peptide gene gene5661 http://www.ncbi.nlm.nih.gov/gene/?term=RB10148 RB10149 RB10149 1959133 1959133 5477832 5487368 - cadherin-related protein best DB hits: BLAST: swissprot:P33450%3B FAT_DROME CADHERIN-RELATED TUMOR SUPPRESSOR%3B E%3D0.68 pir:IJFFTM%3B cadherin-related tumor suppressor precursor - fruit fly%3B E%3D0.68 gb:AAF51036.1%3B (AE003577) ft gene product [Drosophila melanogaster]%3B E%3D0.68 PFAM: PF00028%3B Cadherin domain%3B E%3D0.014 PF00801%3B PKD domain%3B E%3D0.0048 PF02101%3B Ocular albinism type 1 protei%3B E%3D0.26 gene gene5662 http://www.ncbi.nlm.nih.gov/gene/?term=RB10149 RB1015 RB1015 RB1015 531723 532391 + hypothetical protein gene gene545 http://www.ncbi.nlm.nih.gov/gene/?term=RB1015 RB10157 RB10157 RB10157 5487365 5487658 - hypothetical protein gene gene5663 http://www.ncbi.nlm.nih.gov/gene/?term=RB10157 RB10159 RB10159 RB10159 5487643 5489772 + dockerin repeat-containing protein best DB hits: PFAM: PF00404%3B Dockerin type I repeat%3B E%3D0.039 gene gene5664 http://www.ncbi.nlm.nih.gov/gene/?term=RB10159 RB10160 RB10160 pknB pknB 5489812 5493105 - serine/threonine-protein kinase pknB PMID: 835671 best DB hits: BLAST: swissprot:P54744%3B PKNB_MYCLE SERINETHREONINE-PROTEIN%3B E%3D3e-34 swissprot:P71584%3B PKNB_MYCTU SERINETHREONINE-PROTEIN%3B E%3D5e-33 pir:T36717%3B probable serinethreonine protein kinase - Streptomyces%3B E%3D9e-32 COG: Rv0014c_1%3B COG0515 Serine/threonine protein kinases%3B E%3D5e-34 PFAM: PF00069%3B Protein kinase domain%3B E%3D1.3e-46 PF00400%3B WD domain%2C G-beta repeat%3B E%3D0.00029 gene gene5665 http://www.ncbi.nlm.nih.gov/gene/?term=RB10160 RB10164 RB10164 RB10164 5493115 5493693 - sigma factor PMID: 12024217 best DB hits: BLAST: pir:T02748%3B hypothetical protein R31180_1 - human ----- gb:%3B E%3D0.38 gene gene5666 http://www.ncbi.nlm.nih.gov/gene/?term=RB10164 RB10165 RB10165 RB10165 5493761 5496907 - polyhydroxyalkanoate depolymerase PMID: 7836292 best DB hits: BLAST: gb:AAA65703.1%3B (U12976) polyhydroxyalkanoate depolymerase%3B E%3D0.16 swissprot:P52090%3B PHA1_PSELE POLY(3-HYDROXYALKANOATE) DEPOLYMERASE%3B E%3D0.53 PFAM: PF01841%3B Transglutaminase-like superfam%3B E%3D0.00014 gene gene5667 http://www.ncbi.nlm.nih.gov/gene/?term=RB10165 RB10167 RB10167 RB10167 5496917 5497096 - hypothetical protein gene gene5668 http://www.ncbi.nlm.nih.gov/gene/?term=RB10167 RB10168 RB10168 RB10168 5497002 5497235 - hypothetical protein gene gene5669 http://www.ncbi.nlm.nih.gov/gene/?term=RB10168 RB10170 RB10170 cysM cysM 5497260 5498231 + cysteine synthase B PMID: 2188958 best DB hits: BLAST: swissprot:P16703%3B CYSM_ECOLI CYSTEINE SYNTHASE B (O-ACETYLSERINE%3B E%3D1e-30 pir:D82758%3B cysteine synthase XF0831 [imported] - Xylella fastidiosa%3B E%3D1e-30 swissprot:P95230%3B CYSK_MYCTU CYSTEINE SYNTHASE A (O-ACETYLSERINE%3B E%3D2e-30 COG: cysM%3B COG0031 Cysteine synthase%3B E%3D1e-31 PFAM: PF00291%3B Pyridoxal-phosphate dependent enzyme%3B E%3D5.9e-51 gene gene5670 http://www.ncbi.nlm.nih.gov/gene/?term=RB10170 RB10172 RB10172 RB10172 5498330 5499799 - aldehyde dehydrogenase PMID: 9369242 best DB hits: BLAST: gb:AAA64636.1%3B (U07235) aldehyde dehydrogenase [Mus musculus]%3B E%3D1e-163 gb:AAA51693.1%3B (M20456) aldehyde dehydrogenase [Homo sapiens]%3B E%3D1e-163 pir:DEHUE2%3B aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) 2 precursor%2C%3B E%3D1e-162 COG: BH0539%3B COG1012 NAD-dependent aldehyde dehydrogenases%3B E%3D1e-156 PFAM: PF00171%3B Aldehyde dehydrogenase%3B E%3D1.5e-240 gene gene5671 http://www.ncbi.nlm.nih.gov/gene/?term=RB10172 RB10175 RB10175 RB10175 5499953 5501080 - hypothetical protein best DB hits: BLAST: pir:E83192%3B hypothetical protein PA3615 [imported] - Pseudomonas%3B E%3D2e-63 embl:CAC01341.1%3B (AL390975) hypothetical protein [Streptomyces%3B E%3D8e-33 pir:C81216%3B conserved hypothetical protein NMB0283 [imported] -%3B E%3D5e-29 COG: PA3615%3B COG1611 Predicted Rossmann fold nucleotide-binding protein%3B E%3D2e-64 gene gene5672 http://www.ncbi.nlm.nih.gov/gene/?term=RB10175 RB10176 RB10176 RB10176 5500977 5501195 - hypothetical protein gene gene5673 http://www.ncbi.nlm.nih.gov/gene/?term=RB10176 RB10177 RB10177 RB10177 5501183 5502373 + hypothetical protein best DB hits: BLAST: pir:A72312%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D4e-47 pir:S74581%3B hypothetical protein slr1411 - Synechocystis sp. (strain%3B E%3D1e-41 pir:E69014%3B hypothetical protein MTH1109 - Methanobacterium%3B E%3D6e-37 COG: TM0964%3B COG1641 Uncharacterized ACR%3B E%3D4e-48 PFAM: PF01969%3B Protein of unknown function DUF111%3B E%3D6.1e-89 gene gene5674 http://www.ncbi.nlm.nih.gov/gene/?term=RB10177 RB10178 RB10178 RB10178 5502418 5502570 + hypothetical protein gene gene5675 http://www.ncbi.nlm.nih.gov/gene/?term=RB10178 RB10179 RB10179 RB10179 5502594 5503865 + hypothetical protein gene gene5676 http://www.ncbi.nlm.nih.gov/gene/?term=RB10179 RB10180 RB10180 RB10180 5503948 5505756 + peptidase best DB hits: BLAST: ddbj:BAB06575.1%3B (AP001516) peptidase [Bacillus halodurans]%3B E%3D1e-133 pir:T44581%3B thimet oligopeptidase (EC 3.4.24.15) [imported] -%3B E%3D1e-133 swissprot:O31605%3B PEPF_BACSU OLIGOENDOPEPTIDASE F HOMOLOG -----%3B E%3D1e-133 COG: BH2856%3B COG1164 Oligoendopeptidase F%3B E%3D1e-134 PFAM: PF01432%3B Peptidase M3%3B E%3D2.5e-94 gene gene5677 http://www.ncbi.nlm.nih.gov/gene/?term=RB10180 RB10181 RB10181 rbsA rbsA 5505633 5507300 + ribose transport ATP-binding protein rbsA PMID: 7921236 best DB hits: BLAST: swissprot:P36947%3B RBSA_BACSU RIBOSE TRANSPORT ATP-BINDING PROTEIN%3B E%3D4e-92 embl:CAB66285.1%3B (AL136519) ABC transporter protein%2C ATP binding%3B E%3D2e-90 gb:AAK05735.1%3B AE006394_5 (AE006394) ribose ABC transporter ATP%3B E%3D1e-89 COG: BS_rbsA%3B COG1129 ABC-type sugar (aldose) transport system%2C ATPase%3B E%3D4e-93 PFAM: PF02239%3B Cytochrome D1 heme domain%3B E%3D0.31 PF00005%3B ABC transporter%3B E%3D3e-50 gene gene5678 http://www.ncbi.nlm.nih.gov/gene/?term=RB10181 RB10182 RB10182 RB10182 5507302 5507613 - hypothetical protein gene gene5679 http://www.ncbi.nlm.nih.gov/gene/?term=RB10182 RB10184 RB10184 RB10184 5507610 5507891 - hypothetical protein gene gene5680 http://www.ncbi.nlm.nih.gov/gene/?term=RB10184 RB10188 RB10188 upp upp 5508081 5508716 - uracil phosphoribosyltransferase PMID: 7798145 best DB hits: BLAST: ddbj:BAB07483.1%3B (AP001519) uracil phosphoribosyltransferase%3B E%3D8e-45 pir:T48896%3B uracil phosphoribosyltransferase (EC 2.4.2.9) upp%3B E%3D3e-43 swissprot:P39149%3B UPP_BACSU URACIL PHOSPHORIBOSYLTRANSFERASE (UMP%3B E%3D8e-42 COG: BH3764%3B COG0035 Uracil phosphoribosyltransferase%3B E%3D7e-46 PFAM: PF00156%3B Phosphoribosyl transferase doma%3B E%3D6.1e-05 gene gene5681 http://www.ncbi.nlm.nih.gov/gene/?term=RB10188 RB10192 RB10192 pyrC pyrC 5508840 5510252 - dihydroorotase Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides gene gene5682 http://www.ncbi.nlm.nih.gov/gene/?term=RB10192 RB10194 RB10194 RB10194 5510280 5510453 - hypothetical protein gene gene5683 http://www.ncbi.nlm.nih.gov/gene/?term=RB10194 RB10195 RB10195 RB10195 5510484 5511278 - hypothetical protein best DB hits: BLAST: pir:T34929%3B hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces%3B E%3D0.004 embl:CAB94634.1%3B (AL359215) secreted glycosyl hydrolase.%3B E%3D0.013 ddbj:BAB04428.1%3B (AP001509) BH0709~~unknown conserved protein in%3B E%3D0.39 gene gene5684 http://www.ncbi.nlm.nih.gov/gene/?term=RB10195 RB10196 RB10196 RB10196 5511281 5512591 - hypothetical protein best DB hits: BLAST: pir:S76571%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D1e-06 pir:C72255%3B hypothetical protein - Thermotoga maritima (strain MSB8)%3B E%3D5e-05 swissprot:P38527%3B RHO_THEMA TRANSCRIPTION TERMINATION FACTOR RHO%3B E%3D0.71 COG: sll0185%3B COG3330 Uncharacterized BCR%3B E%3D1e-07 gene gene5685 http://www.ncbi.nlm.nih.gov/gene/?term=RB10196 RB10199 RB10199 RB10199 5512584 5512721 - hypothetical protein gene gene5686 http://www.ncbi.nlm.nih.gov/gene/?term=RB10199 RB10200 RB10200 RB10200 5512786 5513028 - hypothetical protein gene gene5687 http://www.ncbi.nlm.nih.gov/gene/?term=RB10200 RB10202 RB10202 RB10202 5512988 5513224 + hypothetical protein gene gene5688 http://www.ncbi.nlm.nih.gov/gene/?term=RB10202 RB10204 RB10204 RB10204 5513405 5513851 + hypothetical protein gene gene5689 http://www.ncbi.nlm.nih.gov/gene/?term=RB10204 RB10206 RB10206 atpB atpB 5513878 5514927 + protein ATP synthase A chain PMID: 2902844 best DB hits: BLAST: swissprot:P15012%3B ATP6_RHORU ATP SYNTHASE A CHAIN (PROTEIN 6)%3B E%3D3e-09 gb:AAD12651.1%3B (U02970) H(+)-transporting ATPase [Prototheca%3B E%3D1e-08 gb:AAF24787.1%3B U17009_19 (U17009) ATP synthase F0 subunit 6%3B E%3D6e-08 COG: XF1149%3B COG0356 F0F1-type ATP synthase a subunit%3B E%3D5e-07 PFAM: PF00119%3B ATP synthase A chain%3B E%3D3.3e-12 gene gene5690 http://www.ncbi.nlm.nih.gov/gene/?term=RB10206 RB10208 RB10208 RB10208 5514957 5515097 + hypothetical protein gene gene5691 http://www.ncbi.nlm.nih.gov/gene/?term=RB10208 RB10209 RB10209 atpE atpE 5515135 5515467 + H+-transporting ATP synthase C chain PMID: 1448623 PMID: 1328152 best DB hits: BLAST: pir:I39786%3B H+-transporting ATP synthase (EC 3.6.1.34) C chain -%3B E%3D0.076 pir:JN0362%3B H+-transporting ATP synthase (EC 3.6.1.34) lipid-binding%3B E%3D0.36 swissprot:P26682%3B ATPL_ENTHR ATP SYNTHASE C CHAIN (LIPID-BINDING%3B E%3D0.38 PFAM: PF00137%3B ATP synthase subunit C%3B E%3D7.6e-07 gene gene5692 http://www.ncbi.nlm.nih.gov/gene/?term=RB10209 RB1021 RB1021 RB1021 534374 535705 - DNA repair exonuclease PMID: 9384377 best DB hits: BLAST: pir:A69819%3B probable phosphoesterase (EC 3.1.-.-) yhaO - Bacillus%3B E%3D6e-12 COG: BS_yhaO%3B COG0420 DNA repair exonuclease%3B E%3D5e-13 PFAM: PF02549%3B DNA repair exonuclease%3B E%3D6.5e-05 gene gene546 http://www.ncbi.nlm.nih.gov/gene/?term=RB1021 RB10211 RB10211 atpF atpF 5515421 5516206 + protein ATP synthase B chain PMID: 2521483 best DB hits: BLAST: swissprot:P20601%3B ATPF_BACME ATP SYNTHASE B CHAIN ----- pir:%3B E%3D7e-12 ddbj:BAB07477.1%3B (AP001519) ATP synthase subunit b [Bacillus%3B E%3D7e-11 gb:AAF22494.1%3B AF098522_4 (AF098522) F1F0-ATPase subunit b%3B E%3D1e-09 COG: BH3758%3B COG0711 F0F1-type ATP synthase b subunit%3B E%3D6e-12 PFAM: PF00430%3B ATP synthase B/B' CF(0)%3B E%3D1.7e-28 gene gene5693 http://www.ncbi.nlm.nih.gov/gene/?term=RB10211 RB10213 RB10213 atpD atpD 5516217 5516900 + ATP synthase subunit delta PMID: 8363578 best DB hits: BLAST: ddbj:BAA23685.1%3B (AB006151) proton-translocating ATPase%2C delta%3B E%3D7e-14 gb:AAC64903.1%3B (AF008185) oligomycin sensitivity conferring%3B E%3D2e-12 pir:S36964%3B H+-transporting ATP synthase (EC 3.6.1.34) delta chain -%3B E%3D3e-12 COG: sll1325%3B COG0712 F0F1-type ATP synthase delta subunit (mitochondrial%3B E%3D6e-13 Rv1307_2%3B COG0712 F0F1-type ATP synthase delta subunit%3B E%3D6e-05 HI0482%3B COG0712 F0F1-type ATP synthase delta subunit (mitochondrial%3B E%3D6e-04 PFAM: PF00213%3B ATP synthase delta (OSCP) subunit%3B E%3D1e-33 gene gene5694 http://www.ncbi.nlm.nih.gov/gene/?term=RB10213 RB10215 RB10215 atpA atpA 5516975 5518498 + ATP synthase F0F1 subunit alpha produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit gene gene5695 http://www.ncbi.nlm.nih.gov/gene/?term=RB10215 RB10216 RB10216 atpG atpG 5518520 5519410 + ATP synthase gamma subunit PMID: 1833620%2C7961438 best DB hits: BLAST: gb:AAG48362.1%3B AF330160_9 (AF330160) ATP synthase gamma subunit%3B E%3D1e-33 pir:C69592%3B H+-transporting ATP synthase (EC 3.6.1.34) gamma chain -%3B E%3D1e-33 swissprot:P37810%3B ATPG_BACSU ATP SYNTHASE GAMMA CHAIN -----%3B E%3D4e-33 COG: BS_atpG%3B COG0224 F0F1-type ATP synthase gamma subunit%3B E%3D1e-34 PFAM: PF00231%3B ATP synthase%3B E%3D2.7e-85 gene gene5696 http://www.ncbi.nlm.nih.gov/gene/?term=RB10216 RB10217 RB10217 atpB atpB 5519560 5520999 + ATP synthase F0F1 subunit beta Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit gene gene5697 http://www.ncbi.nlm.nih.gov/gene/?term=RB10217 RB10219 RB10219 atpE atpE 5521003 5521389 + ATP synthase CF1 subunit e PMID: 2878921 PMID: 1533602 best DB hits: BLAST: gb:AAC35683.1%3B (AF041468) ATP synthase CF1 subunit e [Guillardia%3B E%3D8e-10 gb:AAF13019.1%3B AF022186_193 (AF022186) unknown%3B ATP synthase CF1%3B E%3D1e-09 swissprot:P06542%3B ATPE_ANASP ATP SYNTHASE EPSILON CHAIN -----%3B E%3D3e-09 COG: slr1330%3B COG0355 F0F1-type ATP synthase epsilon subunit%3B E%3D2e-06 atpC%3B COG0355 F0F1-type ATP synthase epsilon subunit (mitochondrial%3B E%3D0.008 PFAM: PF02823%3B ATP synthase%2C Delta/Epsilon cha%3B E%3D2.3e-16 gene gene5698 http://www.ncbi.nlm.nih.gov/gene/?term=RB10219 RB1022 RB1022 RB1022 535760 536701 - gluconolactonase PMID: 1482681 best DB hits: BLAST: embl:CAB59581.1%3B (AL132662) possible gluconolactonase precursor%3B E%3D1e-19 pir:B82698%3B gluconolactonase precursor XF1297 [imported] - Xylella%3B E%3D2e-19 pir:A75539%3B probable gluconolactonase - Deinococcus radiodurans%3B E%3D2e-16 COG: XF1297%3B COG3386 Uncharacterized protein%3B E%3D2e-20 gene gene547 http://www.ncbi.nlm.nih.gov/gene/?term=RB1022 RB10220 RB10220 RB10220 5521409 5521615 - hypothetical protein gene gene5699 http://www.ncbi.nlm.nih.gov/gene/?term=RB10220 RB10221 RB10221 RB10221 5521594 5522802 + disease resistance protein PMID: 8905231 best DB hits: BLAST: pir:S76765%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D2e-12 pir:T51140%3B disease resistance protein RPS4 [imported] - Arabidopsis%3B E%3D0.13 pir:T51141%3B disease resistance protein rps4 [imported] - Arabidopsis%3B E%3D0.13 gene gene5700 http://www.ncbi.nlm.nih.gov/gene/?term=RB10221 RB10223 RB10223 RB10223 5522883 5523362 + hypothetical protein gene gene5701 http://www.ncbi.nlm.nih.gov/gene/?term=RB10223 RB10224 RB10224 RB10224 5523429 5524040 + hypothetical protein gene gene5702 http://www.ncbi.nlm.nih.gov/gene/?term=RB10224 RB10226 RB10226 RB10226 5524018 5525178 + hypothetical protein PMID: 9687406 best DB hits: BLAST: embl:CAB61226.1%3B (Y17305) hypothetical protein [Bacillus%3B E%3D0.13 gene gene5703 http://www.ncbi.nlm.nih.gov/gene/?term=RB10226 RB10227 RB10227 hofB hofB 5525241 5526581 - general secretion pathway protein E PMID: 9537320 best DB hits: BLAST: pir:B70428%3B general secretion pathway protein E - Aquifex aeolicus%3B E%3D7e-21 pir:C75333%3B general secretion pathway protein E - Deinococcus%3B E%3D6e-19 pir:C83313%3B probable type II secretion protein PA2677 [imported] -%3B E%3D1e-18 COG: aq_1474%3B COG2804 Predicted ATPases involved in pili biogenesis%2C PilB%3B E%3D6e-22 PFAM: PF00437%3B Bacterial type II secretion system p%3B E%3D0.00098 gene gene5704 http://www.ncbi.nlm.nih.gov/gene/?term=RB10227 RB10228 RB10228 pilT pilT 5526582 5527784 - twitching motility protein PilT PMID: 8100347 PMID: 1676385 best DB hits: BLAST: pir:F82321%3B twitching motility protein PilT VC0462 [imported] -%3B E%3D2e-65 pir:C70365%3B twitching motility protein PilT - Aquifex aeolicus%3B E%3D1e-63 swissprot:P24559%3B PILT_PSEAE TWITCHING MOBILITY PROTEIN -----%3B E%3D3e-61 COG: VC0462%3B COG2805 Predicted ATPases involved in pili biogenesis%2C PilT%3B E%3D1e-66 XF1517%3B COG2804 Predicted ATPases involved in pili biogenesis%2C PilB%3B E%3D2e-22 PFAM: PF00155%3B Aminotransferase class-I%3B E%3D0.3 PF00448%3B SRP54-type protein%2C GTPase do%3B E%3D0.32 PF00437%3B Bacterial type II secretion s%3B E%3D1.5e-34 gene gene5705 http://www.ncbi.nlm.nih.gov/gene/?term=RB10228 RB10231 RB10231 pyn pyn 5528046 5529317 + pyrimidine-nucleoside phosphorylase (PYNP) PMID: 8987664 PMID: 9817849 PMID: 8987664 best DB hits: BLAST: pdb:1BRW%3B B Chain B%2C The Crystal Structure Of Pyrimidine%3B E%3D3e-70 swissprot:P77836%3B PDP_BACST PYRIMIDINE-NUCLEOSIDE PHOSPHORYLASE%3B E%3D3e-69 swissprot:O53366%3B DEOA_MYCTU THYMIDINE PHOSPHORYLASE (TDRPASE)%3B E%3D1e-68 COG: Rv3314c%3B COG0213 Thymidine phosphorylase%3B E%3D1e-69 PFAM: PF02885%3B Glycosyl transferase%2C%3B E%3D1.4e-15 PF00591%3B Glycosyl transferase%2C%3B E%3D6.1e-39 gene gene5706 http://www.ncbi.nlm.nih.gov/gene/?term=RB10231 RB10232 RB10232 yidJ yidJ 5529398 5530981 + sulfatase yidj PMID: 10336424 best DB hits: BLAST: gb:AAG58881.1%3B AE005599_13 (AE005599) sulfatase%3B E%3D5e-29 swissprot:P31447%3B YIDJ_ECOLI SULFATASE YIDJ -----%3B E%3D1e-28 pir:E83642%3B choline sulfatase PA0031 [imported] - Pseudomonas%3B E%3D1e-27 COG: yidJ%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D1e-29 PAB0793%3B COG2194 Predicted membrane-associated%2C metal-dependent%3B E%3D9e-06 VNG1337C%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D2e-04 PFAM: PF00884%3B Sulfatase%3B E%3D9.3e-36 gene gene5707 http://www.ncbi.nlm.nih.gov/gene/?term=RB10232 RB10235 RB10235 RB10235 5531205 5531750 + hydrolase best DB hits: BLAST: pir:G83172%3B hypothetical protein PA3783 [imported] - Pseudomonas%3B E%3D9e-28 pir:G69776%3B conserved hypothetical protein yddQ - Bacillus subtilis%3B E%3D9e-15 ddbj:BAB11178.1%3B (AB007648) gene_id:MKD15.9~~pir C72413~~similar to%3B E%3D2e-13 COG: PA3783%3B COG1335 Amidases related to nicotinamidase%3B E%3D9e-29 TM0133%3B COG1535 2%2C3-Dihydro-2%2C3 dihydroxybenzoate synthase%3B E%3D2e-06 AF2151%3B COG1335 Amidases related to nicotinamidase%3B E%3D2e-06 PFAM: PF00857%3B Isochorismatase%3B E%3D5.7e-11 gene gene5708 http://www.ncbi.nlm.nih.gov/gene/?term=RB10235 RB10238 RB10238 RB10238 5531834 5533567 + hypothetical protein gene gene5709 http://www.ncbi.nlm.nih.gov/gene/?term=RB10238 RB10240 RB10240 RB10240 5533582 5535099 + hypothetical protein gene gene5710 http://www.ncbi.nlm.nih.gov/gene/?term=RB10240 RB10242 RB10242 dnaJ dnaJ 5535126 5536118 - DnaJ1 protein PMID: 8016869 PMID: 9276481 best DB hits: BLAST: embl:CAA10745.1%3B (AJ132708) DnaJ1 protein [Anabaena sp.]%3B E%3D1e-39 swissprot:P50027%3B DNJH_SYNY3 DNAJ-LIKE PROTEIN SLR0093 -----%3B E%3D1e-39 embl:CAA10739.1%3B (AJ132704) DnaJ1 protein [Anabaena variabilis]%3B E%3D2e-39 COG: slr0093%3B COG2214 Molecular chaperones%2C DnaJ class%3B E%3D9e-41 TP0217%3B COG0484 Molecular chaperones (contain C-terminal Zn finger%3B E%3D2e-27 XF2233%3B COG2214 Molecular chaperones%2C DnaJ class%3B E%3D1e-26 PFAM: PF00226%3B DnaJ domain%3B E%3D3.6e-37 PF01556%3B DnaJ C terminal region%3B E%3D0.48 gene gene5711 http://www.ncbi.nlm.nih.gov/gene/?term=RB10242 RB10243 RB10243 RB10243 5536144 5537874 + hypothetical protein gene gene5712 http://www.ncbi.nlm.nih.gov/gene/?term=RB10243 RB10245 RB10245 dhlA dhlA 5537951 5538937 + haloalkane dehalogenase PMID: 3398051 PMID: 2026135 PMID: 8515812 best DB hits: BLAST: pir:C82615%3B haloalkane dehalogenase XF1965 [imported] - Xylella%3B E%3D2e-36 swissprot:Q50600%3B YJ33_MYCTU HYPOTHETICAL 32.2 KDA PROTEIN RV1833C%3B E%3D3e-23 pdb:1BEZ%3B Haloalkane Dehalogenase Mutant With Trp 175 Replaced%3B E%3D3e-19 COG: XF1965%3B COG0596 Predicted hydrolases or acyltransferases (alpha/beta%3B E%3D2e-37 Rv1833c%3B COG0596 Predicted hydrolases or acyltransferases%3B E%3D3e-24 Rv2579%3B COG0596 Predicted hydrolases or acyltransferases (alpha/beta%3B E%3D1e-16 PFAM: PF00561%3B alpha/beta hydrolase fold%3B E%3D3.5e-20 gene gene5713 http://www.ncbi.nlm.nih.gov/gene/?term=RB10245 RB10246 RB10246 RB10246 5538891 5539841 + hypothetical protein PMID: 9651254 PMID: 10215859 PMID: 10848995 PMID: 11073907 best DB hits: BLAST: gb:AAG32953.1%3B (AF032114) unknown [Methylobacterium extorquens]%3B E%3D2e-21 pir:D69199%3B conserved hypothetical protein MTH743 - Methanobacterium%3B E%3D6e-18 swissprot:Q57680%3B Y227_METJA HYPOTHETICAL PROTEIN MJ0227 -----%3B E%3D2e-16 COG: MTH743%3B COG1767 Uncharacterized ACR%3B E%3D5e-19 PFAM: PF01874%3B CitG family%3B E%3D1.9e-07 gene gene5714 http://www.ncbi.nlm.nih.gov/gene/?term=RB10246 RB10249 RB10249 htrA htrA 5539851 5541332 - serine proteinase HtrA PMID: 9371463 best DB hits: BLAST: pir:D69109%3B serine proteinase HtrA - Methanobacterium%3B E%3D0.014 embl:CAA72164.1%3B (Y11304) ORF E0 [Rhodobacter capsulatus]%3B E%3D0.018 gb:AAF87931.1%3B AF163841_10 (AF163841) serine protease%3B E%3D0.041 COG: MTH1813%3B COG0265 Trypsin-like serine proteases%2C typically%3B E%3D0.001 PFAM: PF00595%3B PDZ domain (Also known as DHR%3B E%3D0.0018 gene gene5715 http://www.ncbi.nlm.nih.gov/gene/?term=RB10249 RB10252 RB10252 RB10252 5541386 5542546 + nourseothricin acetyltransferase best DB hits: BLAST: embl:CAA51674.1%3B (X73149) Nourseothricin acetyltransferase%3B E%3D0.069 gb:AAD47630.1%3B AF156670_1 (AF156670) nourseothricin%3B E%3D0.069 pir:E69786%3B ribosomal-protein-alanine N-acetyltransfer homolog ydiD%3B E%3D0.081 COG: BS_ydiD%3B COG0456 Acetyltransferases%3B E%3D0.008 PFAM: PF00583%3B Acetyltransferase (GNAT) family%3B E%3D7.9e-11 gene gene5716 http://www.ncbi.nlm.nih.gov/gene/?term=RB10252 RB10255 RB10255 RB10255 5542656 5543669 + mechanosensitive ion channel MscS PMID: 10952301 best DB hits: BLAST: pir:A82318%3B conserved hypothetical protein VC0480 [imported] -%3B E%3D1e-37 swissprot:O52401%3B YGGB_EDWIC HYPOTHETICAL 30.6 KDA PROTEIN IN%3B E%3D2e-36 pir:B83096%3B conserved hypothetical protein PA4394 [imported] -%3B E%3D2e-31 COG: VC0480%3B COG0668 Small-conductance mechanosensitive channel%3B E%3D1e-38 HI0195.1%3B COG3264 Small-conductance mechanosensitive channel%3B E%3D2e-12 APE1441%3B COG0668 Small-conductance mechanosensitive channel%3B E%3D4e-12 PFAM: PF00924%3B Uncharacterized protein family UPF00%3B E%3D2.7e-52 gene gene5717 http://www.ncbi.nlm.nih.gov/gene/?term=RB10255 RB10256 RB10256 RB10256 5543753 5544559 + hypothetical protein gene gene5718 http://www.ncbi.nlm.nih.gov/gene/?term=RB10256 RB10258 RB10258 surE surE 5544584 5545453 + 5'/3'-nucleotidase SurE catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate gene gene5719 http://www.ncbi.nlm.nih.gov/gene/?term=RB10258 RB10261 RB10261 csrA csrA 5545719 5545964 - CsrA_thema carbon storage regulator-like protein PMID: 9211896 best DB hits: BLAST: swissprot:Q9WY93%3B CSRA_THEMA CARBON STORAGE REGULATOR HOMOLOG%3B E%3D8e-08 swissprot:P44879%3B CSRA_HAEIN CARBON STORAGE REGULATOR HOMOLOG%3B E%3D1e-07 gb:AAK03372.1%3B (AE006168) CsrA [Pasteurella multocida]%3B E%3D2e-07 COG: TM0251%3B COG1551 Carbon storage regulator (could also regulate%3B E%3D1e-08 PFAM: PF02599%3B Carbon storage regulator%3B E%3D3.6e-16 gene gene5720 http://www.ncbi.nlm.nih.gov/gene/?term=RB10261 RB10263 RB10263 RB10263 5546162 5546338 - hypothetical protein gene gene5721 http://www.ncbi.nlm.nih.gov/gene/?term=RB10263 RB10264 RB10264 eIF-2B eIF-2B 5546370 5547440 - translation initiation factor eIF-2B PMID: 10360571 PMID: 9384377 best DB hits: BLAST: swissprot:Q9X013%3B E2B_THEMA TRANSLATION INITIATION FACTOR%3B E%3D4e-73 swissprot:O31662%3B E2B_BACSU TRANSLATION INITIATION FACTOR%3B E%3D1e-68 swissprot:P74497%3B E2B_SYNY3 TRANSLATION INITIATION FACTOR%3B E%3D4e-68 COG: TM0911%3B COG0182 Translation initiation factor eIF-2B alpha subunit%3B E%3D4e-74 aq_2114_2%3B COG0182 Translation initiation factor eIF-2B alpha%3B E%3D5e-59 PH0702%3B COG0182 Translation initiation factor eIF-2B alpha subunit%3B E%3D8e-58 PFAM: PF01144%3B Coenzyme A transferase%3B E%3D0.17 PF01008%3B Initiation factor 2 subunit family%3B E%3D3.7e-112 gene gene5722 http://www.ncbi.nlm.nih.gov/gene/?term=RB10264 RB10266 RB10266 RB10266 5547471 5549033 - NADH-dependent dehydrogenase best DB hits: BLAST: ddbj:BAB04967.1%3B (AP001511) NADH-dependent dyhydrogenase%3B E%3D7e-09 gb:AAC23913.1%3B (AF039207) NADH-dependent dehydrogenase homolog%3B E%3D3e-07 swissprot:Q54728%3B YJHC_STRPN HYPOTHETICAL PROTEIN IN NANB 3'REGION%3B E%3D5e-06 COG: BH1248%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D7e-10 PFAM: PF01408%3B Oxidoreductase%2C NAD-bindi%3B E%3D4.4e-17 gene gene5723 http://www.ncbi.nlm.nih.gov/gene/?term=RB10266 RB10269 RB10269 RB10269 5549332 5550216 - secreted protein best DB hits: BLAST: embl:CAB61608.1%3B (AL133210) hypothetical protein SCG11A.27c%3B E%3D2e-48 embl:CAA98817.1%3B (Z74285) ORF YDL237w [Saccharomyces cerevisiae]%3B E%3D6e-09 gb:AAF40431.1%3B (AF234680) activity-dependent neuroprotective%3B E%3D0.80 gene gene5724 http://www.ncbi.nlm.nih.gov/gene/?term=RB10269 RB1027 RB1027 RB1027 536965 538317 - hexosyltransferase PMID: 11157937 best DB hits: BLAST: pir:F71196%3B probable hexosyltransferase (EC 2.4.1.-) PH1844 -%3B E%3D1e-09 pir:T35150%3B probable glycosyl transferase - Streptomyces coelicolor%3B E%3D8e-09 swissprot:Q9R9N2%3B LPSB_RHIME LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS%3B E%3D3e-08 COG: PH1844%3B COG0438 Predicted glycosyltransferases%3B E%3D1e-10 PFAM: PF00534%3B Glycosyl transferases group 1%3B E%3D2.7e-25 gene gene548 http://www.ncbi.nlm.nih.gov/gene/?term=RB1027 RB10270 RB10270 crtI crtI 5550356 5551969 - phytoene dehydrogenase PMID: 8467787 PMID: 7588751 PMID: 8021167 best DB hits: BLAST: pir:S43324%3B zeta-carotene desaturase - Anabaena sp. (strain PCC%3B E%3D2e-82 swissprot:Q02861%3B CRTI_MYXXA PHYTOENE DEHYDROGENASE (PHYTOENE%3B E%3D5e-78 pir:T31463%3B probable diapophytoene dehydrogenase crtN -%3B E%3D5e-67 COG: VNG1684G%3B COG1233 Phytoene dehydrogenase and related proteins%3B E%3D7e-60 PFAM: PF01266%3B D-amino acid oxidase%3B E%3D0.0003 PF01494%3B FAD binding domain%3B E%3D9.7e-07 PF01946%3B Thi4 family%3B E%3D0.0015 gene gene5725 http://www.ncbi.nlm.nih.gov/gene/?term=RB10270 RB10271 RB10271 rnH rnH 5552071 5552547 - ribonuclease H PMID: 1698262 PMID: 1311386 PMID: 6296074 best DB hits: BLAST: pdb:1RBR%3B Ribonuclease H (E.C.3.1.26.4) Mutant With His 62%3B E%3D1e-36 pdb:1RBT%3B Ribonuclease H (E.C.3.1.26.4) Mutant With Lys 95%3B E%3D2e-36 pdb:1RBV%3B Ribonuclease H (E.C.3.1.26.4) Mutant With Lys 95%3B E%3D9e-36 COG: rnhA%3B COG0328 Ribonuclease HI%3B E%3D1e-36 PFAM: PF00075%3B RNase H%3B E%3D9.5e-48 gene gene5726 http://www.ncbi.nlm.nih.gov/gene/?term=RB10271 RB10272 RB10272 RB10272 5552651 5553475 - pteridine reductase 1 best DB hits: BLAST: pir:B82680%3B pteridine reductase 1 XF1457 [imported] - Xylella%3B E%3D4e-27 swissprot:P50161%3B VER1_ASPPA VERSICOLORIN REDUCTASE (VER-1)%3B E%3D8e-23 swissprot:Q08632%3B SDR1_PICAB SHORT-CHAIN TYPE%3B E%3D9e-22 COG: XF1457%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D4e-28 PAB1085%3B COG1028 Dehydrogenases with different specificities%3B E%3D1e-20 BH1511%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D2e-19 PFAM: PF00106%3B short chain dehydrogenase%3B E%3D3.1e-32 PF00678%3B Short chain dehydrogenase/reduct%3B E%3D0.0013 gene gene5727 http://www.ncbi.nlm.nih.gov/gene/?term=RB10272 RB10275 RB10275 bioB bioB 5553477 5554556 - biotin synthase catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine gene gene5728 http://www.ncbi.nlm.nih.gov/gene/?term=RB10275 RB10276 RB10276 RB10276 5554594 5555310 - hypothetical protein gene gene5729 http://www.ncbi.nlm.nih.gov/gene/?term=RB10276 RB10277 RB10277 pykA pykA 5555414 5556844 + pyruvate kinase PMID: 9387221 best DB hits: BLAST: ddbj:BAB06882.1%3B (AP001517) pyruvate kinase [Bacillus halodurans]%3B E%3D4e-82 swissprot:P80885%3B KPYK_BACSU PYRUVATE KINASE (PK) (VEGETATIVE%3B E%3D6e-80 swissprot:P51181%3B KPYK_BACLI PYRUVATE KINASE (PK) ----- pir:%3B E%3D1e-79 COG: BH3163_1%3B COG0469 Pyruvate kinase%3B E%3D4e-83 PFAM: PF00478%3B IMP dehydrogenase / GMP reductase C%3B E%3D0.0006 PF00224%3B Pyruvate kinase%2C barrel domain%3B E%3D9.5e-124 PF02887%3B Pyruvate kinase%2C alpha/beta domain%3B E%3D1.3e-06 gene gene5730 http://www.ncbi.nlm.nih.gov/gene/?term=RB10277 RB10279 RB10279 hsp20 hsp20 5557118 5557573 + heat shock protein 20 PMID: 1863771 PMID: 10452954 best DB hits: BLAST: pir:A75436%3B heat shock protein%2C HSP20 family - Deinococcus%3B E%3D3e-20 pir:F82582%3B low molecular weight heat shock protein XF2234%3B E%3D4e-16 pir:D72385%3B heat shock protein%2C class I - Thermotoga maritima%3B E%3D2e-15 COG: DR1114%3B COG0071 Molecular chaperone (small heat shock protein)%3B E%3D3e-21 PFAM: PF00011%3B Hsp20/alpha crystallin family%3B E%3D3.8e-22 gene gene5731 http://www.ncbi.nlm.nih.gov/gene/?term=RB10279 RB10283 RB10283 hsp20 hsp20 5557737 5558060 + heat shock protein SP21 PMID: 8423161 PMID: 8226695 best DB hits: BLAST: pir:F82582%3B low molecular weight heat shock protein XF2234%3B E%3D1e-11 swissprot:Q06823%3B SP21_STIAU SPORE PROTEIN SP21 ----- pir:%3B E%3D3e-11 embl:CAB99442.1%3B (AJ276218) HspA protein [Stigmatella aurantiaca]%3B E%3D3e-11 COG: XF2234%3B COG0071 Molecular chaperone (small heat shock protein)%3B E%3D1e-12 PFAM: PF00011%3B Hsp20/alpha crystallin family%3B E%3D1.1e-20 gene gene5732 http://www.ncbi.nlm.nih.gov/gene/?term=RB10283 RB10286 RB10286 RB10286 5558011 5558157 - hypothetical protein gene gene5733 http://www.ncbi.nlm.nih.gov/gene/?term=RB10286 RB10287 RB10287 RB10287 5558161 5559072 - dihydropicolinate synthase PMID: 11481431 best DB hits: BLAST: pir:T36903%3B probable dihydropicolinate synthase - Streptomyces%3B E%3D0.41 gb:AAG18989.1%3B (AE004999) dihydrodipicolinate synthase%3B DapA%3B E%3D0.42 gene gene5734 http://www.ncbi.nlm.nih.gov/gene/?term=RB10287 RB1029 RB1029 RB1029 538080 538883 + hypothetical protein gene gene549 http://www.ncbi.nlm.nih.gov/gene/?term=RB1029 RB10290 RB10290 RB10290 5559203 5559631 - hypothetical protein gene gene5735 http://www.ncbi.nlm.nih.gov/gene/?term=RB10290 RB10292 RB10292 RB10292 5559646 5561391 + signal peptide PMID: 10656583 gene gene5736 http://www.ncbi.nlm.nih.gov/gene/?term=RB10292 RB10295 RB10295 mtdA mtdA 5561501 5562427 - MtdA bifunctional protein PMID: 8144463 PMID: 9765566 PMID: 11297742 best DB hits: BLAST: swissprot:P55818%3B MTDA_METEX METHYLENETETRAHYDROFOLATE%3B E%3D2e-53 gb:AAD55895.1%3B AF139593_2 (AF139593) methylene%3B E%3D2e-18 gb:AAC27020.1%3B (AF032114) methylene tetrahydromethanopterin%3B E%3D3e-16 PFAM: PF02254%3B KTN NAD-binding domain%3B E%3D0.021 PF00106%3B short chain dehydrogenase%3B E%3D0.00046 gene gene5737 http://www.ncbi.nlm.nih.gov/gene/?term=RB10295 RB10297 RB10297 fae fae 5562491 5563081 - D-arabino 3-hexulose 6-phosphate formaldehyde lyase (hps-2) best DB hits: BLAST: gb:AAB89943.1%3B (AE001014) D-arabino 3-hexulose 6-phosphate%3B E%3D4e-41 pir:D69063%3B conserved hypothetical protein MTH1474 -%3B E%3D2e-40 gb:AAG32954.1%3B (AF032114) formaldehyde-activating enzyme%3B E%3D1e-37 COG: AF1305_1%3B COG1795 Uncharacterized archaeal domain%3B E%3D4e-42 gene gene5738 http://www.ncbi.nlm.nih.gov/gene/?term=RB10297 RB10299 RB10299 RB10299 5563036 5564403 + hypothetical protein PMID: 9651254 PMID: 10215859 PMID: 10848995 PMID: 11073907 best DB hits: BLAST: gb:AAC27021.1%3B (AF032114) unknown [Methylobacterium extorquens]%3B E%3D0.029 embl:CAB92281.1%3B (AL356595) hypothetical protein [Streptomyces%3B E%3D0.43 pir:C83094%3B D-alanine--D-alanine ligase PA4410 [imported] -%3B E%3D0.62 PFAM: PF00826%3B Ribosomal L10%3B E%3D0.66 gene gene5739 http://www.ncbi.nlm.nih.gov/gene/?term=RB10299 RB10300 RB10300 RB10300 5564392 5567523 - signal peptide best DB hits: BLAST: gb:AAG19252.1%3B (AE005021) plastocyanin homology%3B Pcy%3B E%3D0.67 gene gene5740 http://www.ncbi.nlm.nih.gov/gene/?term=RB10300 RB10305 RB10305 RB10305 5567639 5567959 + hypothetical protein PMID: 11474104 gene gene5741 http://www.ncbi.nlm.nih.gov/gene/?term=RB10305 RB10307 RB10307 gly1 gly1 5568000 5569049 + low specificity L-threonine aldolase PMID: 9464392 best DB hits: BLAST: pir:T03500%3B hypothetical protein - Rhodobacter capsulatus -----%3B E%3D1e-70 ddbj:BAA24794.1%3B (AB001577) low specificity L-threonine aldolase%3B E%3D5e-61 gb:AAD42401.1%3B AF157493_9 (AF157493) low specificity L-threonine%3B E%3D2e-59 COG: PA5413%3B COG2008 Threonine aldolase%3B E%3D9e-59 gene gene5742 http://www.ncbi.nlm.nih.gov/gene/?term=RB10307 RB10308 RB10308 RB10308 5569131 5570057 + response regulatory protein PMID: 9823893 PMID: 10984043 best DB hits: BLAST: pir:A71678%3B probable response regulatory protein RP237 - Rickettsia%3B E%3D2e-21 pir:A82428%3B sensory boxGGDEF family protein VCA0697 [imported] -%3B E%3D6e-21 pir:E83183%3B probable two-component response regulator PA3702%3B E%3D1e-20 COG: VCA0697_3%3B COG2199 Diguanylate cyclase/phosphodiesterase domain 1%3B E%3D6e-22 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D5.4e-17 PF00990%3B GGDEF domain%3B E%3D7.2e-44 gene gene5743 http://www.ncbi.nlm.nih.gov/gene/?term=RB10308 RB10309 RB10309 xylE xylE 5570064 5571518 - xylose transporter PMID: 9647823 PMID: 9076741 best DB hits: BLAST: ddbj:BAA31873.1%3B (AB009593) xylose transporter [Tetragenococcus%3B E%3D1e-67 embl:CAA96096.1%3B (Z71474) xylose permease [Bacillus megaterium]%3B E%3D5e-60 swissprot:P09098%3B XYLE_ECOLI D-XYLOSE-PROTON SYMPORTER (D-XYLOSE%3B E%3D2e-57 COG: xylE%3B COG0477 Permeases of the major facilitator superfamily%3B E%3D2e-58 PFAM: PF00083%3B Sugar (and other) transporter%3B E%3D1.2e-118 gene gene5744 http://www.ncbi.nlm.nih.gov/gene/?term=RB10309 RB10310 RB10310 nuoM nuoM 5571523 5572980 - NADH dehydrogenase (ubiquinone) chain M PMID: 7690854 best DB hits: BLAST: pir:H81796%3B NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain M%3B E%3D1e-15 pir:E81220%3B NADH dehydrogenase I%2C M chain NMB0258 [imported] -%3B E%3D4e-15 swissprot:Q9ZCG0%3B NUOM_RICPR NADH DEHYDROGENASE I CHAIN M%3B E%3D3e-14 COG: NMB0258%3B COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M)%3B E%3D4e-16 PH1431%3B COG0651 Formate hydrogenlyase subunit 3%3B E%3D6e-13 HP1272%3B COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M)%3B E%3D3e-12 PFAM: PF00361%3B NADH-Ubiquinone/plastoquinone (co%3B E%3D2e-07 gene gene5745 http://www.ncbi.nlm.nih.gov/gene/?term=RB10310 RB10313 RB10313 ndhF ndhF 5572993 5574402 - NADH subunit 5 PMID: 3035337 best DB hits: BLAST: gb:AAG09461.1%3B AF217811_11 (AF217811) NADH subunit 5 [Tupaia%3B E%3D3e-29 swissprot:P50368%3B NU5M_SCHCO NADH-UBIQUINONE OXIDOREDUCTASE CHAIN%3B E%3D4e-29 embl:CAA50887.1%3B (X72004) NADH-ubiquinone oxidoreductase subunit%3B E%3D1e-28 COG: slr0844%3B COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)%3B E%3D3e-29 PAB1402%3B COG0651 Formate hydrogenlyase subunit 3%3B E%3D4e-17 sll1732%3B COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)%3B E%3D1e-16 PFAM: PF00662%3B NADH-Ubiquinone oxidoreductase%3B E%3D0.41 PF00361%3B NADH-Ubiquinone/plastoquinone (%3B E%3D1.2e-36 gene gene5746 http://www.ncbi.nlm.nih.gov/gene/?term=RB10313 RB10314 RB10314 RB10314 5574399 5577620 - hypothetical protein PMID: 9537320 best DB hits: BLAST: pir:G70374%3B hypothetical protein aq_863 - Aquifex aeolicus -----%3B E%3D6e-49 pir:H82182%3B conserved hypothetical protein VC1582 [imported] - Vibrio%3B E%3D8e-46 pir:E69745%3B hypothetical protein ybcD - Bacillus subtilis -----%3B E%3D1e-39 COG: aq_863%3B COG3002 Uncharacterized BCR%3B E%3D6e-50 PFAM: PF02873%3B UDP-N-acetylenolpyruvoylglucosamine%3B E%3D0.038 gene gene5747 http://www.ncbi.nlm.nih.gov/gene/?term=RB10314 RB10319 RB10319 RB10319 5577574 5577771 + hypothetical protein gene gene5748 http://www.ncbi.nlm.nih.gov/gene/?term=RB10319 RB10322 RB10322 RB10322 5577911 5579290 + two-component sensor histidine kinase PMID: 10086841 PMID: 10086842 PMID: 10192928 best DB hits: BLAST: ddbj:BAB05639.1%3B (AP001513) two-component sensor histidine kinase%3B E%3D5e-22 swissprot:Q06067%3B ATOS_ECOLI SENSOR PROTEIN ATOS ----- pir:%3B E%3D1e-21 pir:S70528%3B sensor protein pilS - Myxococcus xanthus ----- gb:%3B E%3D2e-21 COG: BH1920%3B COG0642 Sensory transduction histidine kinases%3B E%3D5e-23 PFAM: PF00785%3B PAC motif%3B E%3D0.099 PF00512%3B His Kinase A (phosphoacceptor) doma%3B E%3D7.9e-10 PF02518%3B Histidine kinase-%2C DNA gyrase B-%2C p%3B E%3D1.1e-33 gene gene5749 http://www.ncbi.nlm.nih.gov/gene/?term=RB10322 RB10323 RB10323 atoC atoC 5579287 5580654 + acetoacetate metabolism regulatory protein atoC PMID: 9278503 PMID: 9097040 PMID: 8346225 best DB hits: BLAST: swissprot:Q06065%3B ATOC_ECOLI ACETOACETATE METABOLISM REGULATORY%3B E%3D6e-93 pir:F71315%3B probable response regulatory protein (atoC) - syphilis%3B E%3D7e-93 gb:AAF33506.1%3B (AF170176) Salmonella typhimurium transcriptional%3B E%3D3e-89 COG: atoC%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D5e-94 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D1.5e-34 PF00158%3B Sigma-54 interaction domain%3B E%3D1.2e-133 gene gene5750 http://www.ncbi.nlm.nih.gov/gene/?term=RB10323 RB10324 RB10324 RB10324 5580658 5580846 + hypothetical protein gene gene5751 http://www.ncbi.nlm.nih.gov/gene/?term=RB10324 RB10326 RB10326 RB10326 5580833 5582599 + sulfate transporter best DB hits: BLAST: pir:D83631%3B probable sulfate transporter PA0103 [imported] -%3B E%3D6e-41 pir:B70979%3B hypothetical protein Rv3273 - Mycobacterium tuberculosis%3B E%3D2e-37 pir:T36683%3B probable integral membrane protein - Streptomyces%3B E%3D7e-31 COG: PA0103%3B COG0659 Sulfate permease and related transporters (MFS%3B E%3D6e-42 PFAM: PF00916%3B Sulfate transporter family%3B E%3D5.9e-11 gene gene5752 http://www.ncbi.nlm.nih.gov/gene/?term=RB10326 RB10327 RB10327 sui1 sui1 5582627 5583010 + protein translation factor SUI1-like protein best DB hits: BLAST: swissprot:O26118%3B SUI1_METTH PROTEIN TRANSLATION FACTOR SUI1%3B E%3D2e-09 swissprot:Q57902%3B SUI1_METJA PROTEIN TRANSLATION FACTOR SUI1%3B E%3D5e-09 pir:H72542%3B hypothetical protein APE1629 - Aeropyrum pernix (strain%3B E%3D7e-09 COG: MTH10%3B COG0023 Translation initiation factor (SUI1)%3B E%3D2e-10 PFAM: PF01253%3B Translation initiation factor SUI1%3B E%3D1.8e-12 gene gene5753 http://www.ncbi.nlm.nih.gov/gene/?term=RB10327 RB10328 RB10328 RB10328 5582992 5583675 - SAM-dependent methyltransferase PMID: 10567266 PMID: 10086841 best DB hits: BLAST: pir:H75538%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D1e-17 ddbj:BAB05098.1%3B (AP001511) BH1379~~unknown conserved protein%3B E%3D4e-13 swissprot:P54471%3B YQFN_BACSU HYPOTHETICAL 23.7 KD PROTEIN IN%3B E%3D3e-12 COG: DR0276%3B COG2384 Predicted SAM-dependent methyltransferase%3B E%3D1e-18 gene gene5754 http://www.ncbi.nlm.nih.gov/gene/?term=RB10328 RB10329 RB10329 RB10329 5583682 5584935 - serine/threonine protein kinase best DB hits: BLAST: pir:T36501%3B probable serinethreonine protein kinase - Streptomyces%3B E%3D2e-32 swissprot:P71584%3B PKNB_MYCTU SERINETHREONINE-PROTEIN%3B E%3D4e-32 swissprot:P54744%3B PKNB_MYCLE SERINETHREONINE-PROTEIN%3B E%3D5e-31 COG: Rv0014c_1%3B COG0515 Serine/threonine protein kinases%3B E%3D4e-33 PA5360%3B COG0745 Response regulators consisting of a CheY-like%3B E%3D9e-17 VC0622_4%3B COG0784 CheY-like receiver domains%3B E%3D2e-16 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D6e-29 PF00069%3B Protein kinase domain%3B E%3D6.7e-52 gene gene5755 http://www.ncbi.nlm.nih.gov/gene/?term=RB10329 RB1033 RB1033 RB1033 539076 539978 + hypothetical protein gene gene550 http://www.ncbi.nlm.nih.gov/gene/?term=RB1033 RB10330 RB10330 RB10330 5584932 5587514 - sensory transduction histidine kinase best DB hits: BLAST: pir:S75136%3B sensory transduction histidine kinase slr2104 -%3B E%3D3e-69 pir:E83443%3B probable sensorresponse regulator hybrid PA1611%3B E%3D2e-56 pir:H83132%3B probable sensorresponse regulator hybrid PA4112%3B E%3D1e-52 COG: PA4982%3B COG0642 Sensory transduction histidine kinases%3B E%3D4e-49 PFAM: PF00512%3B His Kinase A (phosphoacceptor) d%3B E%3D1.3e-22 PF02518%3B Histidine kinase-%2C DNA gyrase B-%3B E%3D8e-46 PF00072%3B Response regulator receiver doma%3B E%3D6.2e-33 gene gene5756 http://www.ncbi.nlm.nih.gov/gene/?term=RB10330 RB10332 RB10332 RB10332 5587518 5587892 - hypothetical protein gene gene5757 http://www.ncbi.nlm.nih.gov/gene/?term=RB10332 RB10333 RB10333 RB10333 5587906 5589567 - protein kinase-like protein best DB hits: BLAST: pir:T42076%3B protein kinase homolog - Streptomyces coelicolor -----%3B E%3D5e-18 pir:T42077%3B protein kinase homolog - Streptomyces coelicolor -----%3B E%3D1e-16 pir:T35491%3B probable serinethreonine-specific protein kinase pkaF -%3B E%3D1e-16 COG: Rv0014c_1%3B COG0515 Serine/threonine protein kinases%3B E%3D3e-15 PFAM: PF00069%3B Protein kinase domain%3B E%3D3.2e-06 gene gene5758 http://www.ncbi.nlm.nih.gov/gene/?term=RB10333 RB10335 RB10335 uppS uppS 5589648 5590382 - undecaprenyl pyrophosphate synthetase PMID: 9882662 best DB hits: BLAST: swissprot:O31751%3B UPPS_BACSU UNDECAPRENYL PYROPHOSPHATE SYNTHETASE%3B E%3D4e-51 pir:F82099%3B undecaprenyl diphosphate synthase VC2256 [imported] -%3B E%3D3e-50 gb:AAB08603.1%3B (U70214) hypothetical protein [Escherichia coli]%3B E%3D3e-50 COG: BS_yluA%3B COG0020 Undecaprenyl pyrophosphate synthase%3B E%3D4e-52 PFAM: PF01255%3B undecaprenyl diphosph%3B E%3D2.1e-100 gene gene5759 http://www.ncbi.nlm.nih.gov/gene/?term=RB10335 RB10338 RB10338 flbA flbA 5590379 5591839 - FlbA protein PMID: 9748431 PMID: 1699845 best DB hits: BLAST: swissprot:P21296%3B FLBA_CAUCR FLBA PROTEIN ----- gb: AAC62523.1%3B E%3D2e-19 swissprot:P56558%3B OGT1_RAT UDP-N-ACETYLGLUCOSAMINE--PEPTIDE%3B E%3D5e-11 embl:CAA76834.1%3B (Y17720) SPINDLY protein [Petunia x hybrida]%3B E%3D8e-11 COG: aq_2197%3B COG0457 TPR-repeat-containing proteins%3B E%3D2e-09 PFAM: PF00515%3B TPR Domain%3B E%3D5.6e-07 gene gene5760 http://www.ncbi.nlm.nih.gov/gene/?term=RB10338 RB10339 RB10339 rpdD rpdD 5591839 5593398 - RNA polymerase sigma factor rpoD PMID: 2110143 best DB hits: BLAST: swissprot:P56835%3B RPSD_CHLMU RNA POLYMERASE SIGMA FACTOR RPOD%3B E%3D5e-80 swissprot:P18333%3B RPSD_CHLTR RNA POLYMERASE SIGMA FACTOR RPOD%3B E%3D6e-80 pir:RNCW7H%3B transcription initiation factor sigma 70 - Chlamydia%3B E%3D6e-80 COG: CT615%3B COG0568 DNA-directed RNA polymerase sigma subunits%3B E%3D6e-81 PFAM: PF00140%3B Sigma-70 factor%3B E%3D6.7e-109 gene gene5761 http://www.ncbi.nlm.nih.gov/gene/?term=RB10339 RB10341 RB10341 RB10341 5593416 5593601 + hypothetical protein gene gene5762 http://www.ncbi.nlm.nih.gov/gene/?term=RB10341 RB10342 RB10342 RB10342 5593621 5593929 - hypothetical protein gene gene5763 http://www.ncbi.nlm.nih.gov/gene/?term=RB10342 RB10343 RB10343 RB10343 5593898 5594059 + hypothetical protein gene gene5764 http://www.ncbi.nlm.nih.gov/gene/?term=RB10343 RB10344 RB10344 RB10344 5594195 5594752 + hypothetical protein gene gene5765 http://www.ncbi.nlm.nih.gov/gene/?term=RB10344 RB10345 RB10345 RB10345 5594718 5594879 + hypothetical protein gene gene5766 http://www.ncbi.nlm.nih.gov/gene/?term=RB10345 RB10346 RB10346 RB10346 5594855 5595682 - N%2CN-dimethyltransferase best DB hits: BLAST: gb:AAK04327.1%3B AE006260_10 (AE006260) HYPOTHETICAL PROTEIN%3B E%3D0.003 gb:AAC68678.1%3B (AF079762) N%2CN-dimethyltransferase [Streptomyces%3B E%3D0.052 pir:G75136%3B menaquinone biosynthesis methlytransferase related%3B E%3D0.13 gene gene5767 http://www.ncbi.nlm.nih.gov/gene/?term=RB10346 RB10347 RB10347 RB10347 5595704 5596258 - hypothetical protein gene gene5768 http://www.ncbi.nlm.nih.gov/gene/?term=RB10347 RB10350 RB10350 RB10350 5596387 5596878 - hypothetical protein best DB hits: BLAST: pir:H82154%3B conserved hypothetical protein VC1812 [imported] -%3B E%3D6e-04 gb:AAF87148.1%3B AC002423_13 (AC002423) T23E23.25 [Arabidopsis%3B E%3D0.20 COG: VC1812%3B COG3011 Uncharacterized BCR%3B E%3D6e-05 gene gene5769 http://www.ncbi.nlm.nih.gov/gene/?term=RB10350 RB10354 RB10354 RB10354 5597086 5598849 + hypothetical protein gene gene5770 http://www.ncbi.nlm.nih.gov/gene/?term=RB10354 RB10357 RB10357 RB10357 5598846 5599451 + hypothetical protein gene gene5771 http://www.ncbi.nlm.nih.gov/gene/?term=RB10357 RB10358 RB10358 RB10358 5599427 5600203 - hypothetical protein gene gene5772 http://www.ncbi.nlm.nih.gov/gene/?term=RB10358 RB10359 RB10359 RB10359 5600459 5601301 + hypothetical protein best DB hits: BLAST: pir:F83592%3B conserved hypothetical protein PA0419 [imported] -%3B E%3D2e-13 gb:AAK03952.1%3B (AE006224) unknown [Pasteurella multocida]%3B E%3D4e-12 pir:A65080%3B hypothetical protein in endA-gshB intergenic region -%3B E%3D1e-10 COG: PA0419%3B COG1385 Uncharacterized BCR%3B E%3D2e-14 gene gene5773 http://www.ncbi.nlm.nih.gov/gene/?term=RB10359 RB1036 RB1036 RB1036 539939 541381 + hypothetical protein gene gene551 http://www.ncbi.nlm.nih.gov/gene/?term=RB1036 RB10361 RB10361 RB10361 5601276 5601440 + hypothetical protein gene gene5774 http://www.ncbi.nlm.nih.gov/gene/?term=RB10361 RB10362 RB10362 RB10362 5601298 5601540 + hypothetical protein gene gene5775 http://www.ncbi.nlm.nih.gov/gene/?term=RB10362 RB10364 RB10364 RB10364 5601572 5602762 + ATPase with chaperone activity best DB hits: BLAST: pir:H69181%3B hypothetical protein MTH616 - Methanobacterium%3B E%3D5e-30 pir:H69125%3B hypothetical protein MTH210 - Methanobacterium%3B E%3D2e-29 gb:AAC48226.1%3B (AF006826) N-ethylmaleimide-sensitive fusion%3B E%3D0.21 COG: MTH616%3B COG0606 Predicted ATPases%3B E%3D5e-31 PFAM: PF00004%3B ATPase associated with variou%3B E%3D1.9e-06 PF01202%3B Shikimate kinase%3B E%3D0.31 gene gene5776 http://www.ncbi.nlm.nih.gov/gene/?term=RB10364 RB10367 RB10367 RB10367 5602851 5606144 + serine/threonine protein kinase best DB hits: BLAST: pir:C70986%3B probable serinethreonine protein kinase (EC 2.7.1.-) -%3B E%3D1e-17 embl:CAB66178.1%3B (AL136500) probable serinethreonine protein%3B E%3D1e-15 swissprot:Q10697%3B PKNJ_MYCTU PROBABLE SERINETHREONINE-PROTEIN%3B E%3D6e-15 COG: Rv1746%3B COG0515 Serine/threonine protein kinases%3B E%3D1e-18 PFAM: PF00069%3B Protein kinase domain%3B E%3D3.8e-28 gene gene5777 http://www.ncbi.nlm.nih.gov/gene/?term=RB10367 RB10370 RB10370 RB10370 5606187 5606867 - phosphatase PMID: 8969498 best DB hits: BLAST: swissprot:P54607%3B YHCW_BACSU HYPOTHETICAL 24.7 KD PROTEIN IN%3B E%3D6e-15 ref:XP_010289.2%3B DNA segment%2C numerous copies%2C expressed probes%3B E%3D9e-14 gb:AAA58622.1%3B (M86934) Gene from Xp22.3 which escapes%3B E%3D4e-13 COG: BS_yhcW%3B COG0637 Predicted phosphatase/phosphohexomutase%3B E%3D6e-16 gph%3B COG0546 Predicted phosphatases%3B E%3D6e-08 PA2067%3B COG0637 Predicted phosphatase/phosphohexomutase%3B E%3D8e-08 PFAM: PF00702%3B haloacid dehalogenase-like hydrolas%3B E%3D2.1e-26 gene gene5778 http://www.ncbi.nlm.nih.gov/gene/?term=RB10370 RB10372 RB10372 RB10372 5606864 5609191 - hypothetical protein PMID: 10688204 best DB hits: BLAST: pir:B81282%3B probable integral membrane protein Cj1373 [imported] -%3B E%3D5e-09 COG: Cj1373%3B COG1033 Membrane proteins related to SecD/SecF%3B E%3D5e-10 gene gene5779 http://www.ncbi.nlm.nih.gov/gene/?term=RB10372 RB10374 RB10374 lspA lspA 5609188 5609916 - prolipoprotein signal peptidase PMID: 10984043 PMID: 2121716 best DB hits: BLAST: pir:A83077%3B prolipoprotein signal peptidase PA4559 [imported] -%3B E%3D3e-05 swissprot:P17942%3B LSPA_PSEFL LIPOPROTEIN SIGNAL PEPTIDASE%3B E%3D3e-04 embl:CAA11250.1%3B (AJ223309) SPase II [Myxococcus xanthus]%3B E%3D5e-04 COG: PA4559%3B COG0597 Lipoprotein signal peptidase%3B E%3D3e-06 PFAM: PF01252%3B Signal peptidase (SPase) II%3B E%3D0.043 gene gene5780 http://www.ncbi.nlm.nih.gov/gene/?term=RB10374 RB10378 RB10378 trxA trxA 5610063 5610497 - thioredoxin PMID: 2137818 PMID: 3280308 best DB hits: BLAST: swissprot:P08058%3B THIO_RHOSH THIOREDOXIN (TRX) ----- pir:%3B E%3D8e-17 swissprot:P43785%3B THIO_HAEIN THIOREDOXIN (TRX) ----- pir:%3B E%3D2e-14 swissprot:P00275%3B THI1_CORNE THIOREDOXIN C-1 ----- pir: TXFK%3B E%3D1e-13 COG: HI0084%3B COG0526 Thiol-disulfide isomerase and thioredoxins%3B E%3D2e-15 XF2174%3B COG3118 Thioredoxin domain-containing protein%3B E%3D2e-10 PA5240%3B COG0526 Thiol-disulfide isomerase and thioredoxins%3B E%3D2e-10 PFAM: PF00085%3B Thioredoxin%3B E%3D1.1e-24 gene gene5781 http://www.ncbi.nlm.nih.gov/gene/?term=RB10378 RB10380 RB10380 RB10380 5610680 5611582 - hypothetical protein gene gene5782 http://www.ncbi.nlm.nih.gov/gene/?term=RB10380 RB10384 RB10384 RB10384 5611884 5612174 - hypothetical protein gene gene5783 http://www.ncbi.nlm.nih.gov/gene/?term=RB10384 RB10385 RB10385 RB10385 5612201 5612452 - hypothetical protein gene gene5784 http://www.ncbi.nlm.nih.gov/gene/?term=RB10385 RB10386 RB10386 RB10386 5612453 5613286 + signal peptide best DB hits: PFAM: PF01090%3B Ribosomal protein S19e%3B E%3D0.077 gene gene5785 http://www.ncbi.nlm.nih.gov/gene/?term=RB10386 RB10388 RB10388 RB10388 5613357 5615438 + serine/threonine protein kinase best DB hits: BLAST: ddbj:BAB06223.1%3B (AP001515) serinethreonine protein kinase%3B E%3D4e-28 pir:H69878%3B probable protein kinase (EC 2.7.1.-) yloP - Bacillus%3B E%3D1e-27 embl:CAA73979.1%3B (Y13639) protein kinase [Staphylococcus aureus]%3B E%3D5e-27 COG: BH2504_1%3B COG0515 Serine/threonine protein kinases%3B E%3D3e-29 PFAM: PF00069%3B Protein kinase domain%3B E%3D4.6e-52 gene gene5786 http://www.ncbi.nlm.nih.gov/gene/?term=RB10388 RB1039 RB1039 serS serS 541520 542800 + seryl-tRNA synthetase catalyzes a two-step reaction%2C first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA gene gene552 http://www.ncbi.nlm.nih.gov/gene/?term=RB1039 RB10391 RB10391 RB10391 5615419 5616087 + hypothetical protein gene gene5787 http://www.ncbi.nlm.nih.gov/gene/?term=RB10391 RB10392 RB10392 upK upK 5616195 5619110 - receptor protein kinase best DB hits: BLAST: embl:CAC20842.1%3B (AJ250467) receptor protein kinase [Pinus%3B E%3D6e-04 pir:T10659%3B probable serinethreonine-specific protein kinase (EC%3B E%3D0.019 embl:CAB95344.1%3B (AL359782) possible adenylate cyclase%3B E%3D0.081 gene gene5788 http://www.ncbi.nlm.nih.gov/gene/?term=RB10392 RB10395 RB10395 smuG1 smuG1 5619254 5620012 - single-strand selective monofunctional uracil DNA glycosylase PMID: 10074426 best DB hits: BLAST: ddbj:BAA91571.1%3B (AK001235) unnamed protein product [Homo%3B E%3D3e-51 gb:AAD17300.1%3B (AF125181) single-strand selective monofunctional%3B E%3D1e-50 gb:AAF55400.1%3B (AE003716) CG5285 gene product [Drosophila%3B E%3D5e-33 gene gene5789 http://www.ncbi.nlm.nih.gov/gene/?term=RB10395 RB10396 RB10396 RB10396 5620009 5620857 - membrane associated protein gene gene5790 http://www.ncbi.nlm.nih.gov/gene/?term=RB10396 RB10397 RB10397 RB10397 5620781 5621725 - hypothetical protein gene gene5791 http://www.ncbi.nlm.nih.gov/gene/?term=RB10397 RB10398 RB10398 ftsA ftsA 5621773 5623224 + coenzyme F390 synthetase (ftsA-2) best DB hits: BLAST: gb:AAB89578.1%3B (AE000988) coenzyme F390 synthetase (ftsA-2)%3B E%3D6e-37 pir:A69082%3B coenzyme F390 synthetase III - Methanobacterium%3B E%3D2e-36 pir:B69115%3B coenzyme F390 synthetase II - Methanobacterium%3B E%3D7e-36 COG: AF1671%3B COG1541 Coenzyme F390 synthetase%3B E%3D6e-38 gene gene5792 http://www.ncbi.nlm.nih.gov/gene/?term=RB10398 RB10399 RB10399 RB10399 5623215 5623460 - hypothetical protein gene gene5793 http://www.ncbi.nlm.nih.gov/gene/?term=RB10399 RB104 RB104 RB104 44265 44834 - hypothetical protein gene gene58 http://www.ncbi.nlm.nih.gov/gene/?term=RB104 RB1040 RB1040 RB1040 542742 543053 - hypothetical protein gene gene553 http://www.ncbi.nlm.nih.gov/gene/?term=RB1040 RB10401 RB10401 RB10401 5623435 5625792 + type 8 capsule gene Cap8B PMID: 8606192 PMID: 9045821 best DB hits: BLAST: gb:AAB49431.1%3B (U73374) Cap8B [Staphylococcus aureus]%3B E%3D6e-19 gb:AAC46085.1%3B (U81973) Cap5B [Staphylococcus aureus]%3B E%3D1e-18 ddbj:BAB07387.1%3B (AP001519) capsular polysaccharide biosynthesis%3B E%3D2e-18 COG: BH3668%3B COG0489 ATPases involved in chromosome partitioning%3B E%3D2e-19 MJ0547%3B COG0455 ATPases involved in chromosome partitioning%3B E%3D1e-04 PFAM: PF00142%3B 4Fe-4S iron sulfur cluster bindin%3B E%3D0.68 gene gene5794 http://www.ncbi.nlm.nih.gov/gene/?term=RB10401 RB10404 RB10404 RB10404 5625926 5627350 - polysaccharide biosynthesis protein best DB hits: BLAST: pir:F70345%3B polysaccharide biosynthesis protein - Aquifex aeolicus%3B E%3D0.16 gene gene5795 http://www.ncbi.nlm.nih.gov/gene/?term=RB10404 RB10406 RB10406 RB10406 5627316 5628203 - signal peptide gene gene5796 http://www.ncbi.nlm.nih.gov/gene/?term=RB10406 RB10409 RB10409 RB10409 5628235 5628600 + hypothetical protein gene gene5797 http://www.ncbi.nlm.nih.gov/gene/?term=RB10409 RB10410 RB10410 RB10410 5628807 5630213 + hypothetical protein gene gene5798 http://www.ncbi.nlm.nih.gov/gene/?term=RB10410 RB10412 RB10412 RB10412 5630210 5630386 + hypothetical protein gene gene5799 http://www.ncbi.nlm.nih.gov/gene/?term=RB10412 RB10413 RB10413 RB10413 5630383 5634441 - hypothetical protein best DB hits: BLAST: gb:AAB89163.1%3B (AE000959) conserved hypothetical protein%3B E%3D6e-09 PFAM: PF00082%3B Subtilase%3B E%3D5e-12 gene gene5800 http://www.ncbi.nlm.nih.gov/gene/?term=RB10413 RB10416 RB10416 xynB xynB 5634693 5639387 + xylanase PMID: 9294005 best DB hits: BLAST: embl:CAA72323.1%3B (Y11564) xylanase [Rhodothermus marinus]%3B E%3D2e-06 embl:CAA60868.1%3B (X87417) xylanase [Rhodothermus marinus]%3B E%3D2e-06 pir:B72423%3B endo-1%2C4-beta-xylanase B - Thermotoga maritima (strain%3B E%3D4e-06 COG: sll0656_1%3B COG3204 Uncharacterized BCR%3B E%3D6e-06 XF0845%3B COG1472 Beta-glucosidase-related glycosidases%3B E%3D0.008 PFAM: PF00404%3B Dockerin type I repeat%3B E%3D0.49 PF02369%3B Bacterial Ig-like domain (group 1)%3B E%3D0.16 gene gene5801 http://www.ncbi.nlm.nih.gov/gene/?term=RB10416 RB10419 RB10419 RB10419 5639384 5639506 - hypothetical protein gene gene5802 http://www.ncbi.nlm.nih.gov/gene/?term=RB10419 RB10420 RB10420 RB10420 5639547 5640638 + hypothetical protein gene gene5803 http://www.ncbi.nlm.nih.gov/gene/?term=RB10420 RB10423 RB10423 RB10423 5640680 5646919 + cycloinulo-oligosaccharide fructanotransferase PMID: 9406417 best DB hits: BLAST: pir:T18266%3B cycloinulo-oligosaccharide fructanotransferase (EC%3B E%3D4e-05 gb:AAG47946.1%3B AF222787_1 (AF222787) cycloinulo-oligosaccharide%3B E%3D5e-04 pir:E82410%3B hypothetical protein VCA0849 [imported] - Vibrio cholerae%3B E%3D0.016 PFAM: PF00801%3B PKD domain%3B E%3D0.36 PF00404%3B Dockerin type I repeat%3B E%3D0.17 gene gene5804 http://www.ncbi.nlm.nih.gov/gene/?term=RB10423 RB10427 RB10427 RB10427 5646882 5647025 - hypothetical protein gene gene5805 http://www.ncbi.nlm.nih.gov/gene/?term=RB10427 RB10428 RB10428 RB10428 5647066 5648352 - polysaccharide biosynthesis related protein best DB hits: BLAST: gb:AAC44056.1%3B (U51197) unknown [Sphingomonas sp. S88]%3B E%3D1e-12 pir:H75097%3B polysaccharide biosynthesis related protein PAB0783 -%3B E%3D4e-05 COG: PAB0783%3B COG2244 Membrane protein involved in the export of%3B E%3D3e-06 PFAM: PF01943%3B Polysaccharide biosynthesis pro%3B E%3D0.02 gene gene5806 http://www.ncbi.nlm.nih.gov/gene/?term=RB10428 RB1043 RB1043 RB1043 543083 543352 + hypothetical protein gene gene554 http://www.ncbi.nlm.nih.gov/gene/?term=RB1043 RB10430 RB10430 RB10430 5648519 5649511 - hypothetical protein PMID: 11481431 gene gene5807 http://www.ncbi.nlm.nih.gov/gene/?term=RB10430 RB10431 RB10431 RB10431 5649426 5650397 - hypothetical protein gene gene5808 http://www.ncbi.nlm.nih.gov/gene/?term=RB10431 RB10433 RB10433 RB10433 5650421 5651746 - hypothetical protein gene gene5809 http://www.ncbi.nlm.nih.gov/gene/?term=RB10433 RB10434 RB10434 RB10434 5651763 5652902 - mannosyltransferase best DB hits: BLAST: pir:A75597%3B mannosyltransferase - Deinococcus radiodurans (strain%3B E%3D3e-34 pir:I76776%3B Mannosyltransferase (EC 5.-.-.-) B - Escherichia coli%3B E%3D1e-27 gb:AAF04384.1%3B AF189151_7 (AF189151) WbdB%3B mannosyl transferase B%3B E%3D1e-27 COG: DRA0039%3B COG0438 Predicted glycosyltransferases%3B E%3D3e-35 PFAM: PF00534%3B Glycosyl transferases group 1%3B E%3D3.4e-29 gene gene5810 http://www.ncbi.nlm.nih.gov/gene/?term=RB10434 RB10436 RB10436 RB10436 5652865 5654064 - mannosyl transferase PMID: 10978535 best DB hits: BLAST: pir:S22620%3B hypothetical protein 18.9 - Salmonella choleraesuis%3B E%3D7e-55 ddbj:BAB03210.1%3B (AB046360) glycosyltransferase%3B E%3D4e-53 ddbj:BAA94399.1%3B (AB041266) mannosyl transferase [Actinobacillus%3B E%3D2e-52 COG: DRA0040%3B COG0438 Predicted glycosyltransferases%3B E%3D1e-50 PFAM: PF00534%3B Glycosyl transferases group 1%3B E%3D2.4e-29 gene gene5811 http://www.ncbi.nlm.nih.gov/gene/?term=RB10436 RB10439 RB10439 amsG amsG 5654134 5655714 - UDP-galactose-lipid carrier transferase PMID: 7596293 best DB hits: BLAST: swissprot:Q57491%3B Y872_HAEIN HYPOTHETICAL SUGAR TRANSFERASE HI0872%3B E%3D3e-56 swissprot:Q46628%3B AMSG_ERWAM UDP-GALACTOSE-LIPID CARRIER%3B E%3D5e-56 pir:S61891%3B undecaprenyl-phosphate galactosephosphotransferase (EC%3B E%3D5e-56 COG: HI0872%3B COG2148 Sugar transferases involved in lipopolysaccharide%3B E%3D2e-57 PFAM: PF00895%3B ATP synthase 8%3B E%3D0.37 PF02397%3B Bacterial sugar transferase%3B E%3D3.6e-89 gene gene5812 http://www.ncbi.nlm.nih.gov/gene/?term=RB10439 RB1044 RB1044 RB1044 543422 544231 + metal-dependent hydrolase best DB hits: BLAST: pir:T36187%3B hypothetical protein SCE29.08c - Streptomyces coelicolor%3B E%3D6e-52 pir:T34934%3B hypothetical protein SC3F9.12 SC3F9.12 - Streptomyces%3B E%3D9e-47 swissprot:Q58778%3B YD83_METJA HYPOTHETICAL PROTEIN MJ1383 PRECURSOR%3B E%3D7e-19 COG: MJ1383%3B COG1099 Predicted metal-dependent hydrolases with the%3B E%3D6e-20 gene gene555 http://www.ncbi.nlm.nih.gov/gene/?term=RB1044 RB10440 RB10440 RB10440 5655693 5655842 + hypothetical protein gene gene5813 http://www.ncbi.nlm.nih.gov/gene/?term=RB10440 RB10441 RB10441 RB10441 5655913 5656026 + hypothetical protein gene gene5814 http://www.ncbi.nlm.nih.gov/gene/?term=RB10441 RB10442 RB10442 RB10442 5656076 5657962 - methyltransferase or Fe-S oxidoreductase best DB hits: BLAST: swissprot:P42349%3B YC42_SYNY3 HYPOTHETICAL METHYLTRANSFERASE%3B E%3D1e-97 swissprot:Q55914%3B Y309_SYNY3 HYPOTHETICAL METHYLTRANSFERASE%3B E%3D2e-28 swissprot:O58549%3B Y819_PYRHO HYPOTHETICAL METHYLTRANSFERASE PH0819%3B E%3D3e-18 COG: sll1242%3B COG1032 Fe-S oxidoreductases family 2%3B E%3D9e-99 gene gene5815 http://www.ncbi.nlm.nih.gov/gene/?term=RB10442 RB10445 RB10445 RB10445 5658105 5658269 + hypothetical protein gene gene5816 http://www.ncbi.nlm.nih.gov/gene/?term=RB10445 RB10446 RB10446 RB10446 5658266 5667091 + beta keto-acyl synthase best DB hits: BLAST: ddbj:BAA89384.1%3B (AB025342) ORF10 [Moritella marina]%3B E%3D3e-37 pir:T30185%3B hypothetical protein 7 - Shewanella sp ----- gb:%3B E%3D3e-36 pir:T37057%3B probable multi-domain beta keto-acyl synthase -%3B E%3D8e-35 COG: DR1945%3B COG0331 (acyl-carrier-protein) S-malonyltransferase%3B E%3D3e-17 Rv3391_1%3B COG0451 Nucleoside-diphosphate-sugar epimerases%3B E%3D2e-14 BH2492%3B COG0331 (acyl-carrier-protein) S-malonyltransferase%3B E%3D2e-13 PFAM: PF00109%3B Beta-ketoacyl synthase%2C N-ter%3B E%3D7.7e-09 PF02801%3B Beta-ketoacyl synthase%2C C-ter%3B E%3D7.6e-61 PF00109%3B Beta-ketoacyl synthase%2C N-ter%3B E%3D3.6e-21 gene gene5817 http://www.ncbi.nlm.nih.gov/gene/?term=RB10446 RB10451 RB10451 RB10451 5667095 5668255 + dioxygenase Rieske iron-sulfur component best DB hits: BLAST: pir:G70946%3B probable dioxygenase (EC 1.14.-.-) Rieske iron-sulfur%3B E%3D3e-18 pir:T14542%3B choline monooxygenase - beet ----- gb: AAB80954.1%3B E%3D2e-15 pir:G83331%3B anthranilate dioxygenase large subunit PA2512 [imported]%3B E%3D4e-14 COG: Rv3161c%3B COG2146 Ferredoxin subunits of nitrite reductase and%3B E%3D3e-19 PFAM: PF00355%3B Rieske [2Fe-2S] domain%3B E%3D1.8e-21 gene gene5818 http://www.ncbi.nlm.nih.gov/gene/?term=RB10451 RB10454 RB10454 chcA chcA 5668248 5669045 + 1-cyclohexenylcarbonyl CoA reductase PMID: 8955309 PMID: 10973220 best DB hits: BLAST: gb:AAC44655.1%3B (U72144) 1-cyclohexenylcarbonyl CoA reductase%3B E%3D4e-40 pir:B69802%3B glucose 1-dehydrogenase homolog yfhR - Bacillus subtilis%3B E%3D4e-37 ddbj:BAB04657.1%3B (AP001510) glucose 1-dehydrogenase [Bacillus%3B E%3D2e-34 COG: BS_yfhR%3B COG1028 Dehydrogenases with different specificities%3B E%3D4e-38 BH0938%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D2e-35 BS_fabG%3B COG1028 Dehydrogenases with different specificities%3B E%3D3e-26 PFAM: PF00106%3B short chain dehydrogenase%3B E%3D8.7e-45 PF00678%3B Short chain dehydrogenase/reduct%3B E%3D0.0016 gene gene5819 http://www.ncbi.nlm.nih.gov/gene/?term=RB10454 RB10456 RB10456 RB10456 5669104 5670384 + hypothetical protein gene gene5820 http://www.ncbi.nlm.nih.gov/gene/?term=RB10456 RB10458 RB10458 grp grp 5670510 5671130 - RNA-binding protein PMID: 7541909 best DB hits: BLAST: ddbj:BAA08402.1%3B (D49424) RNA-binding protein [Anabaena%3B E%3D4e-16 pir:S58673%3B RNA-binding protein RbpC - Anabaena variabilis%3B E%3D4e-16 pir:S77263%3B RNA-binding protein ssr1480 - Synechocystis sp. (strain%3B E%3D1e-15 COG: ssr1480%3B COG0724 RNA-binding proteins (RRM domain)%3B E%3D1e-16 PFAM: PF00076%3B RNA recognition motif. (a.k.a. RRM%2C%3B E%3D2.9e-31 gene gene5821 http://www.ncbi.nlm.nih.gov/gene/?term=RB10458 RB10459 RB10459 hemY hemY 5671227 5672684 - protoporphyrinogen oxidase PMID: 1459957 PMID: 8288631 best DB hits: BLAST: ddbj:BAB04923.1%3B (AP001511) protoporphyrinogen IX and%3B E%3D2e-46 swissprot:P32397%3B PPOX_BACSU PROTOPORPHYRINOGEN OXIDASE (PPO)%3B E%3D9e-41 swissprot:P56601%3B PPOX_MYXXA PROTOPORPHYRINOGEN OXIDASE (PPO)%3B E%3D8e-39 COG: BH1204%3B COG1232 Protoporphyrinogen oxidase%3B E%3D1e-47 PFAM: PF01494%3B FAD binding domain%3B E%3D0.64 PF01266%3B D-amino acid oxidase%3B E%3D0.00034 PF00221%3B Phenylalanine and histidine amm%3B E%3D0.39 gene gene5822 http://www.ncbi.nlm.nih.gov/gene/?term=RB10459 RB1046 RB1046 recG recG 544232 546436 + ATP-dependent DNA helicase RecG PMID: 7774596 PMID: 1938888 best DB hits: BLAST: pir:H75338%3B DNA helicase RecG - Deinococcus radiodurans (strain R1)%3B E%3D1e-114 swissprot:Q55681%3B RECG_SYNY3 ATP-DEPENDENT DNA HELICASE RECG%3B E%3D1e-111 pir:G72405%3B ATP-dependent DNA helicase - Thermotoga maritima (strain%3B E%3D1e-109 COG: DR1916%3B COG1200 RecG-like helicases%3B E%3D1e-115 BS_mfd%3B COG1197 Transcription-repair coupling factor - superfamily%3B E%3D5e-56 sll0377%3B COG1197 Transcription-repair coupling factor - superfamily II%3B E%3D2e-54 PFAM: PF01336%3B OB-fold nucleic acid binding domai%3B E%3D0.13 PF00271%3B Helicase conserved C-terminal doma%3B E%3D0.0098 PF00270%3B DEAD/DEAH box helicase%3B E%3D2.9e-21 gene gene556 http://www.ncbi.nlm.nih.gov/gene/?term=RB1046 RB10460 RB10460 RB10460 5672698 5674119 - hypothetical protein gene gene5823 http://www.ncbi.nlm.nih.gov/gene/?term=RB10460 RB10462 RB10462 RB10462 5674183 5674386 + hypothetical protein gene gene5824 http://www.ncbi.nlm.nih.gov/gene/?term=RB10462 RB10463 RB10463 fpr fpr 5674394 5675368 + ferredoxin-NADP reductase PMID: 8449868 PMID: 7961651 PMID: 9149148 best DB hits: BLAST: swissprot:P28861%3B FENR_ECOLI FERREDOXIN--NADP REDUCTASE (FNR)%3B E%3D3e-10 pdb:1FDR%3B Flavodoxin Reductase From E. Coli%3B E%3D3e-10 pir:F82624%3B ferredoxin-NADP reductase XF1889 [imported] - Xylella%3B E%3D5e-10 COG: fpr%3B COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases)%3B E%3D3e-11 slr1643%3B COG0369 Sulfite reductase flavoprotein subunit%3B E%3D0.005 PFAM: PF00970%3B Oxidoreductase FAD-binding doma%3B E%3D0.015 PF00175%3B Oxidoreductase FAD/NAD-binding%3B E%3D1.2e-06 gene gene5825 http://www.ncbi.nlm.nih.gov/gene/?term=RB10463 RB10465 RB10465 glgC glgC 5675439 5676728 + glucose-1-phosphate adenylyltransferase catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate gene gene5826 http://www.ncbi.nlm.nih.gov/gene/?term=RB10465 RB10466 RB10466 fabZ fabZ 5676890 5677426 - beta-hydroxyacyl-ACP dehydratase PMID: 7806516 best DB hits: BLAST: gb:AAF98278.1%3B AF197933_8 (AF197933) beta-hydroxyacyl-ACP%3B E%3D1e-05 pir:H81661%3B (3R)-hydroxymyristol-(acyl carrier protein) dehydratase%3B E%3D4e-05 pir:B33171%3B hypothetical 17K protein (lpxA 5' region) - Escherichia%3B E%3D5e-05 COG: fabZ%3B COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier%3B E%3D5e-06 PFAM: PF01377%3B Thioester dehydrase%3B E%3D1.3e-15 gene gene5827 http://www.ncbi.nlm.nih.gov/gene/?term=RB10466 RB10468 RB10468 infA infA 5677614 5677835 - translation initiation factor IF-1 PMID: 3037488 PMID: 1909328 best DB hits: BLAST: pir:A70121%3B probable translation initiation factor IF-1 - Lyme%3B E%3D1e-20 swissprot:O83135%3B IF1_TREPA TRANSLATION INITIATION FACTOR IF-1%3B E%3D3e-20 swissprot:O51191%3B IF1_BORBU TRANSLATION INITIATION FACTOR IF-1%3B E%3D3e-20 COG: BB0169%3B COG0361 Translation initiation factor IF-1%3B E%3D1e-21 PFAM: PF00575%3B S1 RNA binding domain%3B E%3D1.1e-07 gene gene5828 http://www.ncbi.nlm.nih.gov/gene/?term=RB10468 RB10469 RB10469 rpsI rpsI 5677848 5678261 - 30S ribosomal protein S9 PMID: 3884974 PMID: 1091515 best DB hits: BLAST: swissprot:P02363%3B RS9_ECOLI 30S RIBOSOMAL PROTEIN S9 -----%3B E%3D1e-22 gb:AAK02605.1%3B (AE006087) RpS9 [Pasteurella multocida]%3B E%3D5e-22 pir:C82308%3B ribosomal protein S9 VC0571 [imported] - Vibrio cholerae%3B E%3D2e-21 COG: rpsI%3B COG0103 Ribosomal protein S9%3B E%3D1e-23 PFAM: PF00380%3B Ribosomal protein S9/S16%3B E%3D7.2e-51 gene gene5829 http://www.ncbi.nlm.nih.gov/gene/?term=RB10469 RB1047 RB1047 RB1047 546446 546643 + hypothetical protein gene gene557 http://www.ncbi.nlm.nih.gov/gene/?term=RB1047 RB10471 RB10471 rplM rplM 5678304 5678759 - 50S ribosomal protein L13 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit gene gene5830 http://www.ncbi.nlm.nih.gov/gene/?term=RB10471 RB10472 RB10472 RB10472 5678887 5679453 - hypothetical protein gene gene5831 http://www.ncbi.nlm.nih.gov/gene/?term=RB10472 RB10473 RB10473 RB10473 5679433 5681868 + alkaline protease secretion protein AprE best DB hits: BLAST: pir:D71687%3B alkaline proteinase secretion protein apre (aprE) RP314%3B E%3D0.032 pir:E82263%3B conserved hypothetical protein VC0913 [imported] -%3B E%3D0.053 gb:AAK03081.1%3B (AE006139) unknown [Pasteurella multocida]%3B E%3D0.13 COG: RP314%3B COG0845 Membrane-fusion protein%3B E%3D0.003 PFAM: PF01590%3B GAF domain%3B E%3D0.00029 PF00364%3B Biotin-requiring enzyme%3B E%3D0.0022 gene gene5832 http://www.ncbi.nlm.nih.gov/gene/?term=RB10473 RB10478 RB10478 RB10478 5681878 5682843 + AcrA/AcrE family protein best DB hits: BLAST: pir:E82436%3B AcrAAcrE family protein VCA0639 [imported] - Vibrio%3B E%3D7e-04 pir:C70415%3B cation efflux system (czcB-like) - Aquifex aeolicus%3B E%3D0.040 pir:D83099%3B probable RND efflux membrane fusion protein precursor%3B E%3D0.50 COG: VCA0639%3B COG0845 Membrane-fusion protein%3B E%3D6e-05 PFAM: PF00364%3B Biotin-requiring enzyme%3B E%3D0.0048 PF00529%3B HlyD family secretion protein%3B E%3D0.0018 gene gene5833 http://www.ncbi.nlm.nih.gov/gene/?term=RB10478 RB10479 RB10479 RB10479 5682921 5685158 + hypothetical protein best DB hits: BLAST: pir:F70091%3B hypothetical protein yydH - Bacillus subtilis -----%3B E%3D2e-06 pir:H70326%3B hypothetical protein aq_294 - Aquifex aeolicus -----%3B E%3D0.29 PFAM: PF02163%3B Sterol-regulatory element bindi%3B E%3D0.039 gene gene5834 http://www.ncbi.nlm.nih.gov/gene/?term=RB10479 RB1048 RB1048 RB1048 546640 547866 + signal peptide best DB hits: BLAST: pir:A69643%3B serine proteinase Do%2C heat-shock protein htrA - Bacillus%3B E%3D0.77 PFAM: PF00590%3B Tetrapyrrole (Corrin/Porphyri%3B E%3D0.39 gene gene558 http://www.ncbi.nlm.nih.gov/gene/?term=RB1048 RB10481 RB10481 RB10481 5685184 5685432 + hypothetical protein gene gene5835 http://www.ncbi.nlm.nih.gov/gene/?term=RB10481 RB10483 RB10483 RB10483 5685437 5685838 + hypothetical protein gene gene5836 http://www.ncbi.nlm.nih.gov/gene/?term=RB10483 RB10487 RB10487 recQ recQ 5685979 5688987 + hypothetical protein PMID: 3027506 PMID: 3027506 best DB hits: BLAST: gb:AAA24517.1%3B (M30198) recQ [Escherichia coli]%3B E%3D2e-78 gb:AAA67618.1%3B (M87049) DNA-dependent ATPase%2C DNA helicase%3B E%3D2e-78 pir:BVECRQ%3B DNA helicase recQ - Escherichia coli (strain K-12)%3B E%3D2e-78 COG: recQ%3B COG0514 Superfamily II DNA helicase%3B E%3D2e-79 PFAM: PF00270%3B DEAD/DEAH box helicase%3B E%3D2.7e-39 PF00271%3B Helicase conserved C-terminal doma%3B E%3D2.1e-28 gene gene5837 http://www.ncbi.nlm.nih.gov/gene/?term=RB10487 RB10488 RB10488 RB10488 5689099 5691714 - sensory transduction histidine kinase- sensory histidine kinase / response regulator hybrid PMID: 20572072 best DB hits: BLAST: pir:S75136%3B sensory transduction histidine kinase slr2104 -%3B E%3D3e-67 pir:E83443%3B probable sensorresponse regulator hybrid PA1611%3B E%3D2e-64 pir:H82211%3B sensory box sensor histidine kinaseresponse regulator%3B E%3D8e-61 COG: VC1349_2%3B COG0642 Sensory transduction histidine kinases%3B E%3D7e-62 PFAM: PF00785%3B PAC motif%3B E%3D0.00076 PF00512%3B His Kinase A (phosphoacceptor) d%3B E%3D1.6e-28 PF02518%3B Histidine kinase-%2C DNA gyrase B-%3B E%3D1.6e-42 gene gene5838 http://www.ncbi.nlm.nih.gov/gene/?term=RB10488 RB10491 RB10491 cheY cheY 5691635 5692624 - two-component system regulatory protein best DB hits: BLAST: pir:G82805%3B two-component system%2C regulatory protein XF0450%3B E%3D5e-09 swissprot:P43501%3B PILH_PSEAE PILH PROTEIN ----- pir: S40035%3B E%3D3e-08 pir:F82618%3B chemotaxis-related protein kinase XF1952 [imported] -%3B E%3D6e-08 COG: XF0450%3B COG0784 CheY-like receiver domains%3B E%3D5e-10 PA2798%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D6e-08 BH1910_1%3B COG0784 CheY-like receiver domains%3B E%3D2e-07 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D5.7e-25 gene gene5839 http://www.ncbi.nlm.nih.gov/gene/?term=RB10491 RB10494 RB10494 RB10494 5692652 5693962 + hypothetical protein best DB hits: BLAST: gb:AAC15080.1%3B (L37087) HrmA [Nostoc sp.]%3B E%3D5e-25 pir:E72377%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D5e-23 gene gene5840 http://www.ncbi.nlm.nih.gov/gene/?term=RB10494 RB10497 RB10497 RB10497 5693999 5695177 - hypothetical protein gene gene5841 http://www.ncbi.nlm.nih.gov/gene/?term=RB10497 RB105 RB105 RB105 44735 45886 + cysteine proteinase PMID: 9389475 PMID: 7548211 best DB hits: BLAST: gb:AAB89309.1%3B (AE000969) cysteine proteinase%2C %3B E%3D8e-04 gb:AAG54838.1%3B AE005229_1 (AE005229) RTX family exoprotein%3B E%3D0.19 gb:AAD56325.1%3B AC009326_12 (AC009326) unknown protein [Arabidopsis%3B E%3D0.84 gene gene59 http://www.ncbi.nlm.nih.gov/gene/?term=RB105 RB1050 RB1050 RB1050 547902 548189 + hypothetical protein gene gene559 http://www.ncbi.nlm.nih.gov/gene/?term=RB1050 RB10500 RB10500 pgk pgk 5695422 5696615 + phosphoglycerate kinase PMID: 8021172 best DB hits: BLAST: swissprot:P40924%3B PGK_BACSU PHOSPHOGLYCERATE KINASE ----- pir:%3B E%3D3e-96 swissprot:O52632%3B PGK_CLOAB PHOSPHOGLYCERATE KINASE ----- gb:%3B E%3D4e-96 swissprot:P29409%3B PGKH_SPIOL PHOSPHOGLYCERATE KINASE%2C CHLOROPLAST%3B E%3D2e-93 COG: BS_pgk%3B COG0126 3-phosphoglycerate kinase%3B E%3D3e-97 PFAM: PF00162%3B Phosphoglycerate kinase%3B E%3D8.3e-186 gene gene5842 http://www.ncbi.nlm.nih.gov/gene/?term=RB10500 RB10501 RB10501 RB10501 5696612 5696818 + hypothetical protein gene gene5843 http://www.ncbi.nlm.nih.gov/gene/?term=RB10501 RB10503 RB10503 RB10503 5696901 5698274 + lipopolysaccharide biosynthesis protein BplA- NADH-dependent oxidoreductase best DB hits: BLAST: pir:B72359%3B lipopolysaccharide biosynthesis protein BplA -%3B E%3D7e-09 ddbj:BAB05939.1%3B (AP001514) dehydrogenase [Bacillus halodurans]%3B E%3D2e-07 gb:AAC23913.1%3B (AF039207) NADH-dependent dehydrogenase homolog%3B E%3D2e-06 COG: TM0585%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D7e-10 PFAM: PF01118%3B Semialdehyde dehydrogenase%2C NA%3B E%3D0.37 PF01408%3B Oxidoreductase%2C NAD-bin%3B E%3D6e-09 PF02894%3B Oxidoreductase%2C C-termi%3B E%3D0.52 gene gene5844 http://www.ncbi.nlm.nih.gov/gene/?term=RB10503 RB10507 RB10507 RB10507 5698496 5700433 + alpha-glucosidase PMID: 8955399 best DB hits: BLAST: gb:AAC44671.1%3B (U66897) alpha-glucosidase [Bacteroides%3B E%3D4e-42 PFAM: PF01729%3B Quinolinate phosphoribosyl transfera%3B E%3D0.71 gene gene5845 http://www.ncbi.nlm.nih.gov/gene/?term=RB10507 RB10508 RB10508 cinA cinA 5700449 5700982 - related to competence-damage inducible protein best DB hits: BLAST: pir:F83378%3B hypothetical protein PA2141 [imported] - Pseudomonas%3B E%3D7e-08 pir:B82935%3B conserved hypothetical UU083 [imported] - Ureaplasma%3B E%3D9e-08 pir:G71875%3B hypothetical protein jhp0886 - Helicobacter pylori%3B E%3D2e-07 COG: PA2141%3B COG1546 Uncharacterized protein (competence- and%3B E%3D7e-09 PFAM: PF02464%3B Competence-damaged protein%3B E%3D8.7e-13 gene gene5846 http://www.ncbi.nlm.nih.gov/gene/?term=RB10508 RB10510 RB10510 cmk cmk 5700979 5701668 - cytidylate kinase PMID: 9126287 best DB hits: BLAST: swissprot:Q49885%3B KCY_MYCLE CYTIDYLATE KINASE (CK) (CYTIDINE%3B E%3D2e-30 swissprot:Q9RC80%3B KCY_BACHD CYTIDYLATE KINASE (CK) (CYTIDINE%3B E%3D5e-30 pir:S75604%3B pantothenate synthetase panC - Synechocystis sp. (strain%3B E%3D3e-29 COG: BH1634%3B COG0283 Cytidylate kinase%3B E%3D5e-31 PFAM: PF02223%3B Thymidylate kinase%3B E%3D0.42 PF00485%3B Phosphoribulokinase / Uridine%3B E%3D0.094 PF01202%3B Shikimate kinase%3B E%3D3.5e-05 gene gene5847 http://www.ncbi.nlm.nih.gov/gene/?term=RB10510 RB10512 RB10512 RB10512 5701665 5704376 - transmembrane protein best DB hits: BLAST: pir:A75496%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D1e-12 pir:F83287%3B hypothetical protein PA2873 [imported] - Pseudomonas%3B E%3D8e-11 pir:F70464%3B hypothetical protein aq_1912 - Aquifex aeolicus -----%3B E%3D1e-10 COG: DR0620_2%3B COG1305 transglutaminases%2C cysteine%3B E%3D2e-13 PFAM: PF01841%3B Transglutaminase-like superfam%3B E%3D3e-17 gene gene5848 http://www.ncbi.nlm.nih.gov/gene/?term=RB10512 RB10515 RB10515 RB10515 5704327 5705595 - hypothetical protein best DB hits: BLAST: pir:H71125%3B hypothetical protein PH0774 - Pyrococcus horikoshii%3B E%3D6e-06 pir:T34965%3B probable membrane protein - Streptomyces coelicolor%3B E%3D7e-05 pir:A75012%3B conserved hypothetical protein PAB1277 - Pyrococcus%3B E%3D1e-04 COG: PH0774%3B COG1721 Uncharacterized ACR%3B E%3D5e-07 PFAM: PF01882%3B Protein of unknown function DUF58%3B E%3D5.4e-20 gene gene5849 http://www.ncbi.nlm.nih.gov/gene/?term=RB10515 RB10517 RB10517 yeaC yeaC 5705602 5706546 - methanol dehydrogenase regulation homolog yeaC best DB hits: BLAST: pir:C69791%3B methanol dehydrogenase regulation homolog yeaC -%3B E%3D4e-73 ddbj:BAB04323.1%3B (AP001509) methanol dehydrogenase regulatory%3B E%3D6e-73 pir:S75782%3B methanol dehydrogenase regulatory protein -%3B E%3D3e-70 COG: BS_yeaC%3B COG0714 MoxR-like ATPases%3B E%3D4e-74 PFAM: PF00004%3B ATPase associated with%3B E%3D5.2e-06 PF01078%3B Magnesium chelatase%2C subunit%3B E%3D3.4e-13 gene gene5850 http://www.ncbi.nlm.nih.gov/gene/?term=RB10517 RB10518 RB10518 RB10518 5706651 5706881 - hypothetical protein gene gene5851 http://www.ncbi.nlm.nih.gov/gene/?term=RB10518 RB10519 RB10519 dprA dprA 5706831 5708198 + DNA processing chain A best DB hits: BLAST: pir:F81236%3B DNA processing chain A NMB0116 [imported] - Neisseria%3B E%3D5e-47 pir:C82009%3B DprA homolog NMA0158 [imported] - Neisseria meningitidis%3B E%3D4e-46 pir:G82369%3B smf protein VC0048 [imported] - Vibrio cholerae (group%3B E%3D8e-44 COG: NMB0116%3B COG0758 Predicted Rossmann-fold nucleotide-binding protein%3B E%3D5e-48 PFAM: PF00633%3B Helix-hairpin-helix motif.%3B E%3D0.15 PF02481%3B SMF family%3B E%3D2.4e-83 gene gene5852 http://www.ncbi.nlm.nih.gov/gene/?term=RB10519 RB1052 RB1052 RB1052 548353 549528 + hypothetical protein best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.014 gene gene560 http://www.ncbi.nlm.nih.gov/gene/?term=RB1052 RB10521 RB10521 RB10521 5708182 5708343 + hypothetical protein gene gene5853 http://www.ncbi.nlm.nih.gov/gene/?term=RB10521 RB10524 RB10524 RB10524 5708488 5712261 + RNA-binding protein best DB hits: BLAST: pir:D82995%3B conserved hypothetical protein PA5201 [imported] -%3B E%3D9e-17 pir:T35268%3B probable transcription accessory protein - Streptomyces%3B E%3D3e-16 gb:AAK03532.1%3B (AE006181) unknown [Pasteurella multocida]%3B E%3D3e-15 COG: PA5201%3B COG2183 Predicted RNA binding protein%2C contains S1 domain%3B E%3D8e-18 PFAM: PF00575%3B S1 RNA binding domain%3B E%3D7.3e-15 gene gene5854 http://www.ncbi.nlm.nih.gov/gene/?term=RB10524 RB10530 RB10530 RB10530 5712258 5712755 + hypothetical protein gene gene5855 http://www.ncbi.nlm.nih.gov/gene/?term=RB10530 RB10531 RB10531 RB10531 5712827 5712958 + hypothetical protein gene gene5856 http://www.ncbi.nlm.nih.gov/gene/?term=RB10531 RB10533 RB10533 sun sun 5712955 5714478 - Sun/nucleolar protein family protein- tRNA and rRNA cytosine-C5-methylase best DB hits: BLAST: pir:A82193%3B Sunnucleolar protein family protein VC1502 [imported] -%3B E%3D3e-23 gb:AAG56825.1%3B AE005406_4 (AE005406) nucleolar proteins%3B E%3D2e-21 pir:C64945%3B probable rRNA methylase yebU - Escherichia coli -----%3B E%3D5e-21 COG: yebU_1%3B COG0144 tRNA and rRNA cytosine-C5-methylases%3B E%3D5e-22 PFAM: PF01189%3B NOL1/NOP2/sun family%3B E%3D1.1e-24 gene gene5857 http://www.ncbi.nlm.nih.gov/gene/?term=RB10533 RB10535 RB10535 RB10535 5714475 5714810 - hypothetical protein gene gene5858 http://www.ncbi.nlm.nih.gov/gene/?term=RB10535 RB10536 RB10536 spoVG spoVG 5714785 5715492 - stage V sporulation protein G- protein involved in regulation of septum location PMID: http://us.expasy.org/cgi-bin/niceprot.pl?P28016 best DB hits: BLAST: ddbj:BAB03783.1%3B (AP001507) stage V sporulation protein G%3B E%3D3e-11 swissprot:P28016%3B SP5G_BACME STAGE V SPORULATION PROTEIN G -----%3B E%3D8e-10 swissprot:P28015%3B SP5G_BACSU STAGE V SPORULATION PROTEIN G -----%3B E%3D1e-09 COG: BH0064%3B COG2088 Uncharacterized protein%2C involved in the regulation%3B E%3D3e-12 BS_spoVG%3B COG2088 Uncharacterized protein%2C involved in the%3B E%3D1e-10 AF1778%3B COG2088 Uncharacterized protein%2C involved in the regulation%3B E%3D3e-05 gene gene5859 http://www.ncbi.nlm.nih.gov/gene/?term=RB10536 RB10537 RB10537 ispE ispE 5715502 5716491 - 4-diphosphocytidyl-2C-methyl-D-erythritol kinase best DB hits: BLAST: swissprot:Q9KGK0%3B ISPE_BACHD%3B E%3D2e-13 swissprot:Q9RR89%3B ISPE_DEIRA%3B E%3D1e-12 swissprot:O05596%3B ISPE_MYCTU%3B E%3D2e-10 COG: BH0061%3B COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol%3B E%3D2e-14 ychB%3B COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate%3B E%3D2e-05 TM1383%3B COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol%3B E%3D2e-04 gene gene5860 http://www.ncbi.nlm.nih.gov/gene/?term=RB10537 RB10538 RB10538 RB10538 5716496 5717476 - hypothetical protein best DB hits: BLAST: pir:E70410%3B hypothetical protein aq_1276 - Aquifex aeolicus -----%3B E%3D2e-15 gb:AAA96792.1%3B (U51683) ORF9%3B hypothetical protein [Brucella%3B E%3D4e-14 pir:G71632%3B hypothetical protein RP730 - Rickettsia prowazekii%3B E%3D8e-12 gene gene5861 http://www.ncbi.nlm.nih.gov/gene/?term=RB10538 RB10539 RB10539 lpdX lpdX 5717509 5718741 - UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase PMID: 1987124 PMID: 1602961 PMID: 1429432 PMID: 8444173 PMID: 8366125 best DB hits: BLAST: pir:F72094%3B UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine%3B E%3D4e-46 swissprot:O24991%3B LPXD_HELPY UDP-3-O-[3-HYDROXYMYRISTOYL]%3B E%3D1e-43 gb:AAC45422.1%3B (U79481)%3B E%3D7e-43 COG: CPn0302%3B COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine%3B E%3D4e-47 lpxA%3B COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine%3B E%3D1e-13 NMB0178%3B COG1043 Acyl-[acyl carrier%3B E%3D2e-12 PFAM: PF00132%3B Bacterial transferase hexapeptide (f%3B E%3D0.0016 gene gene5862 http://www.ncbi.nlm.nih.gov/gene/?term=RB10539 RB10541 RB10541 RB10541 5718795 5719784 + TPR repeat-containing O-linked GlcNAc transferase best DB hits: BLAST: gb:AAF26789.1%3B AC016829_13 (AC016829) O-linked GlcNAc%3B E%3D1e-05 swissprot:P56558%3B OGT1_RAT UDP-N-ACETYLGLUCOSAMINE--PEPTIDE%3B E%3D3e-05 gb:AAF31458.1%3B (AF223393) HRNT1 [Homo sapiens]%3B E%3D3e-05 COG: TP0468%3B COG0457 TPR-repeat-containing proteins%3B E%3D7e-04 PFAM: PF00515%3B TPR Domain%3B E%3D0.00012 gene gene5863 http://www.ncbi.nlm.nih.gov/gene/?term=RB10541 RB10547 RB10547 glyS glyS 5719900 5721576 + glycyl-tRNA synthetase Catalyzes a two-step reaction%2C first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA gene gene5864 http://www.ncbi.nlm.nih.gov/gene/?term=RB10547 RB10548 RB10548 RB10548 5721577 5721732 + hypothetical protein gene gene5865 http://www.ncbi.nlm.nih.gov/gene/?term=RB10548 RB10549 RB10549 RB10549 5721750 5722643 - hypothetical protein best DB hits: BLAST: pir:G83242%3B hypothetical protein PA3219 [imported] - Pseudomonas%3B E%3D6e-35 COG: PA3219%3B COG2908 Uncharacterized BCR%3B E%3D5e-36 gene gene5866 http://www.ncbi.nlm.nih.gov/gene/?term=RB10549 RB10551 RB10551 RB10551 5722722 5722991 + hypothetical protein gene gene5867 http://www.ncbi.nlm.nih.gov/gene/?term=RB10551 RB10552 RB10552 RB10552 5722904 5723086 + hypothetical protein gene gene5868 http://www.ncbi.nlm.nih.gov/gene/?term=RB10552 RB10553 RB10553 sdhC sdhC 5723185 5724069 + succinate dehydrogenase cytochrome B-558 subunit PMID: 3086287 PMID: 3027051 PMID: 3036777 best DB hits: BLAST: swissprot:P08064%3B DHSC_BACSU SUCCINATE DEHYDROGENASE CYTOCHROME%3B E%3D2e-23 embl:CAA69871.1%3B (Y08563) succinate dehydrogenase subunit C%3B E%3D6e-20 ddbj:BAB06812.1%3B (AP001517) succinate dehydrogenase cytochrome%3B E%3D1e-19 COG: BS_sdhC%3B COG2009 Succinate dehydrogenase/fumarate reductase%3B E%3D2e-24 gene gene5869 http://www.ncbi.nlm.nih.gov/gene/?term=RB10553 RB10554 RB10554 sdhA sdhA 5724111 5726120 + succinate dehydrogenase flavoprotein subunit part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers)%3B SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556%3B SdhC binds ubiquinone%3B oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol gene gene5870 http://www.ncbi.nlm.nih.gov/gene/?term=RB10554 RB10555 RB10555 sdhB sdhB 5726209 5727063 + succinate dehydrogenase iron-sulfur subunit part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers)%3B SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556%3B SdhC binds ubiquinone%3B oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol%3B the catalytic subunits are similar to fumarate reductase gene gene5871 http://www.ncbi.nlm.nih.gov/gene/?term=RB10555 RB10556 RB10556 RB10556 5727064 5727468 + signal peptide gene gene5872 http://www.ncbi.nlm.nih.gov/gene/?term=RB10556 RB10558 RB10558 RB10558 5727501 5729066 - calmodulin-like membrane associated Ca(2+)-binding protein best DB hits: BLAST: ddbj:BAA95412.1%3B (AB036744) This protein has 3 calmodulin-like%3B E%3D0.002 ddbj:BAB03079.1%3B (AP001313) calmodulin-like protein [Arabidopsis%3B E%3D0.016 pir:A31797%3B Spec-related protein (clone LpS1) - sea urchin%3B E%3D0.032 PFAM: PF00036%3B EF hand%3B E%3D0.096 gene gene5873 http://www.ncbi.nlm.nih.gov/gene/?term=RB10558 RB1056 RB1056 RB1056 549506 549727 - hypothetical protein gene gene561 http://www.ncbi.nlm.nih.gov/gene/?term=RB1056 RB10560 RB10560 RB10560 5729063 5731867 - GSP protein best DB hits: PFAM: PF00263%3B Bacterial type II and III secretio%3B E%3D0.066 gene gene5874 http://www.ncbi.nlm.nih.gov/gene/?term=RB10560 RB10563 RB10563 RB10563 5732009 5732605 + hypothetical protein gene gene5875 http://www.ncbi.nlm.nih.gov/gene/?term=RB10563 RB10566 RB10566 gntP gntP 5732695 5734146 - gluconate permease gntP PMID: 3020045 best DB hits: BLAST: ddbj:BAA83912.1%3B (AB024550) GNTP [Bacillus halodurans] -----%3B E%3D3e-28 gb:AAK03824.1%3B (AE006211) GntP [Pasteurella multocida]%3B E%3D4e-28 swissprot:Q9Z670%3B GNTP_ZYMMO GLUCONATE PERMEASE ----- gb:%3B E%3D6e-26 COG: BH0805%3B COG2610 H+/gluconate symporter and related permeases%3B E%3D3e-29 PFAM: PF02447%3B GntP family permease%3B E%3D1.7e-49 gene gene5876 http://www.ncbi.nlm.nih.gov/gene/?term=RB10566 RB10567 RB10567 ate1 ate1 5734191 5734994 - arginyl-tRNA-protein transferase Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate gene gene5877 http://www.ncbi.nlm.nih.gov/gene/?term=RB10567 RB10569 RB10569 RB10569 5735008 5736174 - hypothetical protein gene gene5878 http://www.ncbi.nlm.nih.gov/gene/?term=RB10569 RB1057 RB1057 RB1057 549724 549933 - hypothetical protein gene gene562 http://www.ncbi.nlm.nih.gov/gene/?term=RB1057 RB10570 RB10570 RB10570 5736125 5736859 - hypothetical protein gene gene5879 http://www.ncbi.nlm.nih.gov/gene/?term=RB10570 RB10573 RB10573 RB10573 5736845 5737138 + hypothetical protein gene gene5880 http://www.ncbi.nlm.nih.gov/gene/?term=RB10573 RB10574 RB10574 RB10574 5737148 5738278 - hypothetical protein gene gene5881 http://www.ncbi.nlm.nih.gov/gene/?term=RB10574 RB10576 RB10576 RB10576 5738298 5738786 + hypothetical protein gene gene5882 http://www.ncbi.nlm.nih.gov/gene/?term=RB10576 RB10579 RB10579 RB10579 5738949 5739254 - signal peptide gene gene5883 http://www.ncbi.nlm.nih.gov/gene/?term=RB10579 RB10580 RB10580 RB10580 5739063 5739272 + signal peptide gene gene5884 http://www.ncbi.nlm.nih.gov/gene/?term=RB10580 RB10581 RB10581 RB10581 5739353 5740507 + hypothetical protein best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene5885 http://www.ncbi.nlm.nih.gov/gene/?term=RB10581 RB10583 RB10583 RB10583 5740602 5743778 + TPR repeat-containing protein best DB hits: BLAST: pir:B70374%3B conserved hypothetical protein aq_854 - Aquifex aeolicus%3B E%3D1e-05 ddbj:BAA91540.1%3B (AK001182) unnamed protein product [Homo%3B E%3D0.12 embl:CAB98267.1%3B (AJ276171) ASPIC [Homo sapiens]%3B E%3D0.12 COG: aq_854%3B COG0457 TPR-repeat-containing proteins%3B E%3D1e-06 PFAM: PF00515%3B TPR Domain%3B E%3D0.059 gene gene5886 http://www.ncbi.nlm.nih.gov/gene/?term=RB10583 RB10586 RB10586 pepQ pepQ 5743888 5745102 + X-pro aminopeptidase PepQ2 best DB hits: BLAST: gb:AAG19595.1%3B (AE005049) X-pro aminopeptidase homolog%3B PepQ2%3B E%3D1e-43 gb:AAB89220.1%3B (AE000962) X-pro aminopeptidase (pepQ)%3B E%3D3e-16 swissprot:Q10698%3B YK89_MYCTU PROBABLE DIPEPTIDASE RV2089C -----%3B E%3D4e-16 COG: VNG1233G%3B COG0006 Xaa-Pro aminopeptidase%3B E%3D1e-44 PFAM: PF00557%3B metallopeptidase M24%3B E%3D0.3 gene gene5887 http://www.ncbi.nlm.nih.gov/gene/?term=RB10586 RB10587 RB10587 RB10587 5745087 5745764 + phosphoesterase best DB hits: BLAST: pir:F75129%3B hypothetical protein PAB0562 - Pyrococcus abyssi (strain%3B E%3D4e-07 embl:CAC23276.1%3B (AL512965) hypothetical [Sulfolobus%3B E%3D1e-05 pir:A69108%3B probable phosphoesterase (EC 3.1.-.-) MTH1803 -%3B E%3D2e-04 COG: PAB0562%3B COG1407 Predicted ICC-like phosphoesterases%3B E%3D3e-08 gene gene5888 http://www.ncbi.nlm.nih.gov/gene/?term=RB10587 RB10589 RB10589 RB10589 5745783 5745971 + hypothetical protein gene gene5889 http://www.ncbi.nlm.nih.gov/gene/?term=RB10589 RB1059 RB1059 RB1059 550031 550912 + signal peptide gene gene563 http://www.ncbi.nlm.nih.gov/gene/?term=RB1059 RB10590 RB10590 RB10590 5745968 5747566 + glucans biosynthesis protein mdoC- transmembrane protein PMID: 10368134 best DB hits: BLAST: swissprot:P75920%3B MDOC_ECOLI GLUCANS BIOSYNTHESIS PROTEIN MDOC%3B E%3D2e-10 gb:AAG55793.1%3B AE005315_7 (AE005315) orf%2C hypothetical protein%3B E%3D2e-09 embl:CAB77037.1%3B (AJ245997) hypothetical protein [Xanthomonas%3B E%3D0.003 PFAM: PF00023%3B Ank repeat%3B E%3D1e-05 gene gene5890 http://www.ncbi.nlm.nih.gov/gene/?term=RB10590 RB10591 RB10591 pfk pfk 5747563 5748924 - pyrophosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the formation of fructose 1%2C6-bisphosphate from fructose 6-phosphate and diphosphate gene gene5891 http://www.ncbi.nlm.nih.gov/gene/?term=RB10591 RB10592 RB10592 pyc pyc 5749128 5752628 - pyruvate carboxylase biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate gene gene5892 http://www.ncbi.nlm.nih.gov/gene/?term=RB10592 RB10593 RB10593 RB10593 5752771 5753001 - hypothetical protein gene gene5893 http://www.ncbi.nlm.nih.gov/gene/?term=RB10593 RB10595 RB10595 RB10595 5752935 5755793 - hypothetical protein best DB hits: BLAST: pir:T49425%3B hypothetical protein B17C10.60 [imported] - Neurospora%3B E%3D0.0 embl:CAA87818.1%3B (Z47815) unknown [Saccharomyces cerevisiae]%3B E%3D0.0 embl:CAA96728.1%3B (Z72549) ORF YGL027c [Saccharomyces cerevisiae]%3B E%3D7e-06 PFAM: PF00452%3B Apoptosis regulator proteins%2C B%3B E%3D0.0068 gene gene5894 http://www.ncbi.nlm.nih.gov/gene/?term=RB10595 RB10596 RB10596 RB10596 5755604 5756743 - hypothetical protein gene gene5895 http://www.ncbi.nlm.nih.gov/gene/?term=RB10596 RB10599 RB10599 arsB arsB 5756796 5758457 - sulfatase 1 precursor PMID: 20233298 best DB hits: BLAST: gb:AAF30402.1%3B AF109924_1 (AF109924) sulfatase 1 precursor [Helix%3B E%3D8e-37 gb:AAF49287.1%3B (AE003522) CG7402 gene product [Drosophila%3B E%3D2e-29 gb:AAA51779.1%3B (M32373) arylsulfatase B precursor [Homo sapiens]%3B E%3D3e-29 COG: PA0183%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D6e-26 PFAM: PF00884%3B Sulfatase%3B E%3D2e-35 gene gene5896 http://www.ncbi.nlm.nih.gov/gene/?term=RB10599 RB1060 RB1060 RB1060 550990 553890 - hypothetical protein gene gene564 http://www.ncbi.nlm.nih.gov/gene/?term=RB1060 RB10601 RB10601 RB10601 5758512 5758793 - hypothetical protein gene gene5897 http://www.ncbi.nlm.nih.gov/gene/?term=RB10601 RB10603 RB10603 RB10603 5758745 5759563 + signal peptide best DB hits: BLAST: embl:CAB94996.1%3B (AJ278464) annexin A11 [Homo sapiens]%3B E%3D0.20 ref:XP_005688.1%3B annexin XI [Homo sapiens]%3B E%3D0.56 gene gene5898 http://www.ncbi.nlm.nih.gov/gene/?term=RB10603 RB10607 RB10607 RB10607 5759537 5759926 - hypothetical protein gene gene5899 http://www.ncbi.nlm.nih.gov/gene/?term=RB10607 RB10608 RB10608 RB10608 5759903 5761276 + transposase insG for insertion sequence element IS4 PMID: 11292750 best DB hits: BLAST: swissprot:P03835%3B YI41_ECOLI INSERTION ELEMENT IS4 HYPOTHETICAL%3B E%3D0.030 embl:CAA57483.1%3B (X81894) ORF [Enterobacter agglomerans]%3B E%3D0.064 COG: yi41%3B COG3385 Predicted transposase%3B E%3D0.003 gene gene5900 http://www.ncbi.nlm.nih.gov/gene/?term=RB10608 RB10612 RB10612 RB10612 5761454 5762932 + iduronate-2-sulfatase PMID: 8244397 PMID: 8325651 best DB hits: BLAST: gb:AAA16877.1%3B (L13329) iduronate-2-sulfatase [Homo sapiens]%3B E%3D1e-39 gb:AAB33747.1%3B iduronate-2-sulfatase%2C IDS {EC 3.1.6.13} [human%2C%3B E%3D6e-39 gb:AAA37880.1%3B (L07921) iduronate sulfatase [Mus musculus]%3B E%3D6e-37 COG: PA0031%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D2e-28 PAB0793%3B COG2194 Predicted membrane-associated%2C metal-dependent%3B E%3D1e-08 VNG0061C%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D2e-08 PFAM: PF00884%3B Sulfatase%3B E%3D5.7e-22 gene gene5901 http://www.ncbi.nlm.nih.gov/gene/?term=RB10612 RB10614 RB10614 RB10614 5763239 5764348 - lipopolysaccharide core biosynthesis glycosyl transferase lpsD PMID: 11157937 PMID: 11481430 best DB hits: BLAST: swissprot:Q9R9N0%3B LPSD_RHIME LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS%3B E%3D4e-17 swissprot:Q9R9N1%3B LPSE_RHIME LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS%3B E%3D2e-16 ddbj:BAB07431.1%3B (AP001519) BH3712~~unknown conserved protein%3B E%3D3e-14 COG: DR0713%3B COG0438 Predicted glycosyltransferases%3B E%3D3e-17 PFAM: PF00534%3B Glycosyl transferases group 1%3B E%3D1e-30 gene gene5902 http://www.ncbi.nlm.nih.gov/gene/?term=RB10614 RB10616 RB10616 RB10616 5764381 5766285 - altronate hydrolase PMID: 9278503 PMID: 3038546 best DB hits: BLAST: ddbj:BAB04209.1%3B (AP001508) altronate hydrolase [Bacillus%3B E%3D6e-65 gb:AAG58224.1%3B AE005539_1 (AE005539) altronate hydrolase%3B E%3D2e-64 swissprot:P42604%3B UXAA_ECOLI ALTRONATE HYDROLASE (ALTRONIC ACID%3B E%3D2e-63 COG: BH0490%3B COG2721 Altronate dehydratase%3B E%3D6e-66 gene gene5903 http://www.ncbi.nlm.nih.gov/gene/?term=RB10616 RB10617 RB10617 sucC sucC 5766160 5767401 + succinyl-CoA synthetase subunit beta PMID: 3002435 PMID: 8144675 best DB hits: BLAST: ddbj:BAB06189.1%3B (AP001515) succinyl-CoA synthetase (beta%3B E%3D1e-101 swissprot:P80886%3B SUCC_BACSU SUCCINYL-COA SYNTHETASE BETA CHAIN%3B E%3D5e-99 pir:H82120%3B succinyl-CoA synthase%2C beta chain VC2085 [imported] -%3B E%3D8e-91 COG: BH2470%3B COG0045 Succinyl-CoA synthetase beta subunit%3B E%3D1e-102 PFAM: PF02222%3B ATP-grasp domain%3B E%3D1.7e-37 PF00549%3B CoA-ligase%3B E%3D1.3e-66 gene gene5904 http://www.ncbi.nlm.nih.gov/gene/?term=RB10617 RB10619 RB10619 sucD sucD 5767521 5768393 + succinyl-CoA synthetase subunit alpha PMID: 3002435 PMID: 2548486 PMID: 8144675 best DB hits: BLAST: embl:CAA54877.1%3B (X77919) succinyl-CoA synthetase alpha%3B E%3D3e-91 swissprot:P53591%3B SUCD_COXBU SUCCINYL-COA SYNTHETASE ALPHA CHAIN%3B E%3D5e-91 swissprot:P07459%3B SUCD_ECOLI SUCCINYL-COA SYNTHETASE ALPHA CHAIN%3B E%3D5e-90 COG: sucD%3B COG0074 succinyl-CoA synthetase subunit alpha%3B E%3D5e-91 PFAM: PF00549%3B CoA-ligase%3B E%3D4.1e-64 gene gene5905 http://www.ncbi.nlm.nih.gov/gene/?term=RB10619 RB10620 RB10620 RB10620 5768412 5768561 - hypothetical protein gene gene5906 http://www.ncbi.nlm.nih.gov/gene/?term=RB10620 RB10621 RB10621 RB10621 5768572 5768916 - hypothetical protein gene gene5907 http://www.ncbi.nlm.nih.gov/gene/?term=RB10621 RB10623 RB10623 RB10623 5768958 5769140 - hypothetical protein gene gene5908 http://www.ncbi.nlm.nih.gov/gene/?term=RB10623 RB10627 RB10627 groES groES 5769148 5769429 + molecular chaperone GroES PMID: 98386497 best DB hits: BLAST: gb:AAC36499.1%3B (U45241) GroESHSP10 homolog [Lawsonia%3B E%3D1e-21 ddbj:BAA19726.1%3B (D88802) groES [Bacillus subtilis] -----%3B E%3D2e-21 swissprot:P26210%3B CH10_BACP3 10 KD CHAPERONIN (PROTEIN CPN10)%3B E%3D4e-21 COG: BS_groES%3B COG0234 Co-chaperonin GroES (HSP10)%3B E%3D2e-22 PFAM: PF00166%3B Chaperonin 10 Kd subunit%3B E%3D6.3e-47 gene gene5909 http://www.ncbi.nlm.nih.gov/gene/?term=RB10627 RB10629 RB10629 groEL groEL 5769500 5771119 + molecular chaperone GroEL PMID: 8808920 best DB hits: BLAST: gb:AAD37976.1%3B AF145252_2 (AF145252) heat shock protein GroEL%3B E%3D1e-165 swissprot:P77829%3B CH61_BRAJA 60 KD CHAPERONIN 1 (PROTEIN CPN60 1)%3B E%3D1e-165 gb:AAC36500.1%3B (U45241) GroELHSP60 homolog [Lawsonia%3B E%3D1e-162 COG: CPn0134%3B COG0459 Chaperonin GroEL (HSP60 family)%3B E%3D1e-162 PFAM: PF00118%3B TCP-1/cpn60 chaperonin family%3B E%3D3.5e-219 gene gene5910 http://www.ncbi.nlm.nih.gov/gene/?term=RB10629 RB1063 RB1063 RB1063 554028 555143 + oxidoreductase PMID: 10086842 best DB hits: BLAST: pir:T04014%3B hypothetical protein F17A8.20 - Arabidopsis thaliana%3B E%3D4e-24 ddbj:BAB07562.1%3B (AP001520) oxidoreductase [Bacillus halodurans]%3B E%3D8e-21 gb:AAD39613.1%3B AC007454_12 (AC007454) Similar to gb D14605 AX110P%3B E%3D2e-20 COG: BH3843%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D8e-22 PFAM: PF01408%3B Oxidoreductase%2C NAD-bin%3B E%3D4.8e-38 gene gene565 http://www.ncbi.nlm.nih.gov/gene/?term=RB1063 RB10630 RB10630 RB10630 5771116 5771277 + hypothetical protein gene gene5911 http://www.ncbi.nlm.nih.gov/gene/?term=RB10630 RB10631 RB10631 RB10631 5771311 5772474 + dioxygenase alpha subunit yeaW PMID: 11258796 old EC_number%3D1.14.1.- best DB hits: BLAST: pir:G70946%3B probable dioxygenase (EC 1.14.-.-) Rieske iron-sulfur%3B E%3D4e-17 ddbj:BAA15597.1%3B (D90823) Benzene 1%2C2-dioxygenase a subunit (EC%3B E%3D2e-15 swissprot:P76253%3B YEAW_ECOLI DIOXYGENASE ALPHA SUBUNIT%3B E%3D2e-15 COG: Rv3161c%3B COG2146 Ferredoxin subunits of nitrite reductase and%3B E%3D3e-18 PFAM: PF00355%3B Rieske [2Fe-2S] domain%3B E%3D4.6e-17 gene gene5912 http://www.ncbi.nlm.nih.gov/gene/?term=RB10631 RB10634 RB10634 RB10634 5772471 5773010 + hypothetical protein gene gene5913 http://www.ncbi.nlm.nih.gov/gene/?term=RB10634 RB10637 RB10637 RB10637 5772967 5773164 + hypothetical protein gene gene5914 http://www.ncbi.nlm.nih.gov/gene/?term=RB10637 RB10638 RB10638 rpsB rpsB 5773547 5774329 + 30S ribosomal protein S2 one of the last subunits in the assembly of the 30S subunit%3B absence of S2 does not inhibit assembly but results in an inactive subunit gene gene5915 http://www.ncbi.nlm.nih.gov/gene/?term=RB10638 RB10640 RB10640 tsf tsf 5774380 5775360 + elongation factor Ts EF-Ts%3B functions during elongation stage of protein translation%3B forms a dimer%3B associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu gene gene5916 http://www.ncbi.nlm.nih.gov/gene/?term=RB10640 RB10641 RB10641 RB10641 5775513 5776442 - beta-subunit of geranylgeranyltransferase or farnesyltransferase best DB hits: BLAST: ddbj:BAB10039.1%3B (AB007727) Rab geranylgeranyltransferase%2C beta%3B E%3D5e-05 swissprot:P41992%3B PFTB_CAEEL PROBABLE PROTEIN FARNESYLTRANSFERASE%3B E%3D7e-05 swissprot:Q04903%3B PFTB_PEA PROTEIN FARNESYLTRANSFERASE BETA%3B E%3D0.005 PFAM: PF00432%3B Prenyltransferase and squalene ox%3B E%3D1.4e-08 gene gene5917 http://www.ncbi.nlm.nih.gov/gene/?term=RB10641 RB10644 RB10644 flgK flgK 5776444 5778198 - flagellar hook-associated protein PMID: 8158647 best DB hits: BLAST: pir:A81293%3B probable flagellar hook-associated protein Cj1466%3B E%3D8e-31 pir:G71853%3B flagellar hook-associated protein 1 (hap1) -%3B E%3D9e-29 gb:AAG61142.1%3B (AF333079) flagellar hook-associated protein 1%3B E%3D2e-28 COG: Cj1466%3B COG1256 Flagellar hook-associated protein%3B E%3D8e-32 PFAM: PF00460%3B Flagella basal body rod protein%3B E%3D7.7e-08 gene gene5918 http://www.ncbi.nlm.nih.gov/gene/?term=RB10644 RB10648 RB10648 RB10648 5778228 5779160 - hypothetical protein gene gene5919 http://www.ncbi.nlm.nih.gov/gene/?term=RB10648 RB1065 RB1065 glnB glnB 555140 555457 + nitrogen regulatory protein P-II PMID: 2574599 best DB hits: BLAST: swissprot:Q52905%3B GLNB_RHIME NITROGEN REGULATORY PROTEIN P-II%3B E%3D3e-18 gb:AAD56036.1%3B AF182395_2 (AF182395) P-II regulatory protein%3B E%3D1e-17 swissprot:P21193%3B GLNB_AZOBR NITROGEN REGULATORY PROTEIN P-II%3B E%3D1e-17 COG: NMB1995%3B COG0347 Nitrogen regulatory protein PII%3B E%3D7e-18 PFAM: PF00543%3B Nitrogen regulatory protein P-II%3B E%3D5.6e-25 gene gene566 http://www.ncbi.nlm.nih.gov/gene/?term=RB1065 RB10650 RB10650 trpB trpB 5779234 5780457 + tryptophan synthase subunit beta catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate gene gene5920 http://www.ncbi.nlm.nih.gov/gene/?term=RB10650 RB10652 RB10652 RB10652 5780554 5781579 + C-methyltransferase PMID: 10660060 best DB hits: BLAST: gb:AAD55584.1%3B (AF077869) C-methyltransferase [Streptomyces%3B E%3D4e-09 gb:AAG15232.1%3B AF288602_4 (AF288602) CrtF [Chloroflexus%3B E%3D4e-07 pir:T34921%3B probable methyltransferase - Streptomyces coelicolor%3B E%3D2e-06 COG: Rv0089%3B COG0500 SAM-dependent methyltransferases%3B E%3D7e-04 DR2405%3B COG2226 Methylase involved in ubiquinone/menaquinone%3B E%3D0.002 gene gene5921 http://www.ncbi.nlm.nih.gov/gene/?term=RB10652 RB10653 RB10653 nifS nifS 5781576 5782817 + nifS protein best DB hits: BLAST: gb:AAK05889.1%3B AE006408_13 (AE006408) conserved hypothetical%3B E%3D2e-16 pir:A72506%3B probable tRNA splicing protein SPL1 APE2023 - Aeropyrum%3B E%3D3e-17 pir:F65063%3B hypothetical protein b2810 - Escherichia coli (strain%3B E%3D8e-18 COG: BB0084%3B COG0520 Selenocysteine lyase%3B E%3D2e-13 yfhO%3B COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase%3B E%3D1e-14 BS_ycbU%3B COG0520 Selenocysteine lyase%3B E%3D2e-15 PFAM: PF00266%3B Aminotransferase class-V%3B E%3D1.5e-05 gene gene5922 http://www.ncbi.nlm.nih.gov/gene/?term=RB10653 RB10654 RB10654 coaD coaD 5782824 5783363 + phosphopantetheine adenylyltransferase PMID: 10480925 PMID: 10205156 best DB hits: BLAST: swissprot:Q9WZK0%3B COAD_THEMA PHOSPHOPANTETHEINE%3B E%3D1e-27 ddbj:BAB06308.1%3B (AP001516) pantetheine-phosphate%3B E%3D1e-27 swissprot:Q55235%3B COAD_SYNP7 PHOSPHOPANTETHEINE%3B E%3D1e-27 COG: TM0741%3B COG0669 Phosphopantetheine adenylyltransferase%3B E%3D1e-28 VNG0301C%3B COG1056 Nicotinamide mononucleotide adenylyltransferase%3B E%3D0.003 aq_1368%3B COG0615 Predicted cytidylyltransferases%3B E%3D0.005 PFAM: PF01467%3B Cytidylyltransferase%3B E%3D3.7e-32 gene gene5923 http://www.ncbi.nlm.nih.gov/gene/?term=RB10654 RB10655 RB10655 RB10655 5783360 5784292 + transcriptional regulator best DB hits: BLAST: pir:G83352%3B transcriptional regulator MtlR PA2337 [imported] -%3B E%3D1e-09 pir:S52856%3B AraC-like protein - Azorhizobium caulinodans -----%3B E%3D1e-08 gb:AAF43900.1%3B (U20115) adpA-like protein [Mycobacterium%3B E%3D2e-08 COG: PA2337%3B COG2207 AraC-type DNA-binding domain-containing proteins%3B E%3D1e-10 BS_adaA%3B COG2169 Adenosine deaminase%3B E%3D1e-05 araC%3B COG2207 AraC-type DNA-binding domain-containing proteins%3B E%3D1e-05 PFAM: PF00165%3B Bacterial regulatory helix-turn-heli%3B E%3D1.4e-21 gene gene5924 http://www.ncbi.nlm.nih.gov/gene/?term=RB10655 RB10656 RB10656 RB10656 5784251 5784517 - hypothetical protein gene gene5925 http://www.ncbi.nlm.nih.gov/gene/?term=RB10656 RB10657 RB10657 RB10657 5784704 5784823 - hypothetical protein gene gene5926 http://www.ncbi.nlm.nih.gov/gene/?term=RB10657 RB10659 RB10659 yahN yahN 5784820 5788650 - hypothetical protein best DB hits: BLAST: pir:H69818%3B conserved hypothetical protein yhaN - Bacillus subtilis%3B E%3D2e-07 ddbj:BAB05865.1%3B (AP001514) BH2146~~unknown conserved protein%3B E%3D0.002 pir:S56387%3B hypothetical protein f1107 - Escherichia coli -----%3B E%3D0.004 COG: BH2146%3B COG1511 Predicted membrane protein%3B E%3D2e-04 yjeP%3B COG3264 Small-conductance mechanosensitive channel%3B E%3D4e-04 PFAM: PF00005%3B ABC transporter%3B E%3D0.1 gene gene5927 http://www.ncbi.nlm.nih.gov/gene/?term=RB10659 RB1066 RB1066 RB1066 555508 557970 - hypothetical protein gene gene567 http://www.ncbi.nlm.nih.gov/gene/?term=RB1066 RB10663 RB10663 RB10663 5788593 5789888 - phosphoesterase yhaO- DNA repair exonuclease best DB hits: BLAST: pir:A69819%3B probable phosphoesterase (EC 3.1.-.-) yhaO - Bacillus%3B E%3D3e-31 pir:E75103%3B DNA repair protein rad32 (rad32) PAB0811 - Pyrococcus%3B E%3D6e-07 gb:AAG60901.1%3B AF322013_20 (AF322013) ID473 [Bradyrhizobium%3B E%3D1e-05 COG: BS_yhaO%3B COG0420 DNA repair exonuclease%3B E%3D3e-32 PFAM: PF02549%3B DNA repair exonuclease%3B E%3D5.9e-18 gene gene5928 http://www.ncbi.nlm.nih.gov/gene/?term=RB10663 RB10665 RB10665 RB10665 5789912 5790514 + hypothetical protein best DB hits: BLAST: ddbj:BAB03764.1%3B (AP001507) signal peptidase-like protein%3B E%3D0.87 gene gene5929 http://www.ncbi.nlm.nih.gov/gene/?term=RB10665 RB10666 RB10666 RB10666 5790485 5796394 - hypothetical protein best DB hits: BLAST: pir:F69009%3B probable membrane protein MTH1074 - Methanobacterium%3B E%3D1e-114 embl:CAA48444.1%3B (X68367) ORF5' [Methanobacterium%3B E%3D9e-18 pir:S30585%3B hypothetical protein 5 - Methanobacterium thermoformicicum%3B E%3D6e-17 PFAM: PF01345%3B Domain of unknown function DUF11%3B E%3D0.007 gene gene5930 http://www.ncbi.nlm.nih.gov/gene/?term=RB10666 RB10668 RB10668 RB10668 5796352 5796528 - hypothetical protein gene gene5931 http://www.ncbi.nlm.nih.gov/gene/?term=RB10668 RB10670 RB10670 RB10670 5796491 5798362 - hypothetical protein best DB hits: BLAST: pir:B83531%3B hypothetical protein PA0924 [imported] - Pseudomonas%3B E%3D1e-12 pir:D82055%3B conserved hypothetical protein VC2600 [imported] -%3B E%3D7e-06 gb:AAK03767.1%3B (AE006205) unknown [Pasteurella multocida]%3B E%3D0.12 COG: PA0924%3B COG3083 Predicted hydrolase of alkaline phosphatase%3B E%3D1e-13 gene gene5932 http://www.ncbi.nlm.nih.gov/gene/?term=RB10670 RB10672 RB10672 RB10672 5798359 5798598 - hypothetical protein gene gene5933 http://www.ncbi.nlm.nih.gov/gene/?term=RB10672 RB10673 RB10673 RB10673 5798531 5799907 - transmembrane protein best DB hits: BLAST: pir:S22614%3B hypothetical protein - Salmonella choleraesuis -----%3B E%3D9e-25 gene gene5934 http://www.ncbi.nlm.nih.gov/gene/?term=RB10673 RB10674 RB10674 RB10674 5799904 5800080 - hypothetical protein gene gene5935 http://www.ncbi.nlm.nih.gov/gene/?term=RB10674 RB10675 RB10675 RB10675 5800168 5802507 - hypothetical protein gene gene5936 http://www.ncbi.nlm.nih.gov/gene/?term=RB10675 RB10678 RB10678 RB10678 5802466 5802816 + hypothetical protein gene gene5937 http://www.ncbi.nlm.nih.gov/gene/?term=RB10678 RB10679 RB10679 RB10679 5802930 5804603 + signal peptide best DB hits: BLAST: pir:S00715%3B hypothetical protein - Calothrix sp ----- embl:%3B E%3D0.64 gene gene5938 http://www.ncbi.nlm.nih.gov/gene/?term=RB10679 RB10680 RB10680 RB10680 5804628 5806019 - hypothetical protein best DB hits: PFAM: PF00534%3B Glycosyl transferases group 1%3B E%3D0.001 gene gene5939 http://www.ncbi.nlm.nih.gov/gene/?term=RB10680 RB10682 RB10682 RB10682 5805998 5807422 - signal peptide gene gene5940 http://www.ncbi.nlm.nih.gov/gene/?term=RB10682 RB10683 RB10683 RB10683 5806079 5807173 + hypothetical protein best DB hits: BLAST: gb:AAK03171.1%3B (AE006150) unknown [Pasteurella multocida]%3B E%3D4e-48 embl:CAB63312.1%3B (AL133471) hypothetical protein SCC82.03c%3B E%3D5e-48 swissprot:P45672%3B NIR3_AZOBR NIFR3-LIKE PROTEIN ----- pir:%3B E%3D1e-46 COG: BH0097%3B COG0042 Predicted TIM-barrel enzymes%2C possibly%3B E%3D2e-47 yhdG%3B COG0042 Predicted TIM-barrel enzymes%2C possibly dehydrogenases%2C%3B E%3D1e-42 RP011%3B COG0042 Predicted TIM-barrel enzymes%2C possibly%3B E%3D3e-41 PFAM: PF01207%3B Uncharacterized protein family UPF00%3B E%3D3.3e-79 gene gene5941 http://www.ncbi.nlm.nih.gov/gene/?term=RB10683 RB10686 RB10686 RB10686 5807477 5807791 + hypothetical protein PMID: 12024217 gene gene5942 http://www.ncbi.nlm.nih.gov/gene/?term=RB10686 RB10687 RB10687 RB10687 5807486 5807884 - hypothetical protein gene gene5943 http://www.ncbi.nlm.nih.gov/gene/?term=RB10687 RB10688 RB10688 RB10688 5807769 5807960 + hypothetical protein gene gene5944 http://www.ncbi.nlm.nih.gov/gene/?term=RB10688 RB10689 RB10689 RB10689 5807950 5808207 - hypothetical protein gene gene5945 http://www.ncbi.nlm.nih.gov/gene/?term=RB10689 RB10690 RB10690 RB10690 5808255 5809544 - hypothetical protein best DB hits: BLAST: pir:T34936%3B hypothetical protein SC3F9.14 SC3F9.14 - Streptomyces%3B E%3D3e-83 pir:T36185%3B hypothetical protein SCE29.06c - Streptomyces coelicolor%3B E%3D2e-73 pir:B82537%3B phosphodiesterase-nucleotide pyrophosphatase precursor%3B E%3D0.094 COG: XF2599%3B COG1524 Uncharacterized proteins of the AP superfamily%3B E%3D0.009 PFAM: PF01663%3B Type I phosphodiesterase / nucle%3B E%3D0.18 gene gene5946 http://www.ncbi.nlm.nih.gov/gene/?term=RB10690 RB10693 RB10693 dagA dagA 5809698 5811395 + Na(+)-linked D-alanine glycine permease PMID: 1447975 best DB hits: BLAST: embl:CAC01597.1%3B (AL391041) amino acid transport%3B E%3D1e-90 gb:AAF12563.1%3B AE001826_32 (AE001826) Na(+)-linked D-alanine%3B E%3D5e-81 ddbj:BAB07752.1%3B (AP001520) amino acid transporter [Bacillus%3B E%3D4e-46 COG: DRB0133%3B COG1115 Na+/alanine symporter%3B E%3D4e-82 PFAM: PF02497%3B Arterivirus glycoprotein%3B E%3D0.45 PF00746%3B Gram positive anchor%3B E%3D0.031 PF01235%3B Sodium:alanine symporter fami%3B E%3D5.2e-96 gene gene5947 http://www.ncbi.nlm.nih.gov/gene/?term=RB10693 RB10696 RB10696 RB10696 5811856 5812854 + hypothetical protein gene gene5949 http://www.ncbi.nlm.nih.gov/gene/?term=RB10696 RB10697 RB10697 RB10697 5811978 5812436 - signal peptide gene gene5950 http://www.ncbi.nlm.nih.gov/gene/?term=RB10697 RB10698 RB10698 RB10698 5812573 5813025 - hypothetical protein gene gene5951 http://www.ncbi.nlm.nih.gov/gene/?term=RB10698 RB10699 RB10699 RB10699 5812882 5813082 + hypothetical protein gene gene5952 http://www.ncbi.nlm.nih.gov/gene/?term=RB10699 RB107 RB107 RB107 45883 47262 + hypothetical protein PMID: 8921874 best DB hits: BLAST: pir:A58519%3B hypothetical 345 protein - Streptomyces coelicolor%3B E%3D0.14 pir:H69064%3B serinethreonine protein kinase related protein -%3B E%3D0.20 gb:AAG31169.1%3B (AF314961) unknown [Salmonella typhimurium]%3B E%3D0.64 PFAM: PF01011%3B PQQ enzyme repeat%3B E%3D0.2 gene gene60 http://www.ncbi.nlm.nih.gov/gene/?term=RB107 RB10700 RB10700 tolQ tolQ 5813102 5813809 + TolQ PMID: 8921895 best DB hits: BLAST: gb:AAK03054.1%3B (AE006136) TolQ [Pasteurella multocida]%3B E%3D3e-10 swissprot:P43768%3B TOLQ_HAEIN TOLQ PROTEIN ----- pir: I64064%3B E%3D7e-09 pir:PC4258%3B tolQ protein - Haemophilus influenzae (fragment) -----%3B E%3D2e-08 COG: HI0385%3B COG0811 Biopolymer transport proteins%3B E%3D7e-10 PFAM: PF01618%3B MotA/TolQ/ExbB proton channel famil%3B E%3D1.4e-18 gene gene5953 http://www.ncbi.nlm.nih.gov/gene/?term=RB10700 RB10702 RB10702 RB10702 5813809 5814297 + biopolymer transport exbD2 protein PMID: 9781885 best DB hits: BLAST: pir:E82726%3B conserved hypothetical protein XF1080 [imported] -%3B E%3D0.007 swissprot:Q9ZHV9%3B EXD2_VIBCH BIOPOLYMER TRANSPORT EXBD2 PROTEIN%3B E%3D0.043 pir:B82858%3B biopolymer transport ExbD1 protein XF0011 [imported] -%3B E%3D0.16 COG: XF1080%3B COG0848 Biopolymer transport protein%3B E%3D7e-04 PFAM: PF02472%3B Biopolymer transport protein ExbD/To%3B E%3D5.3e-06 gene gene5954 http://www.ncbi.nlm.nih.gov/gene/?term=RB10702 RB10704 RB10704 exbD exbD 5814372 5815151 + biopolymer transport exbD protein PMID: 9140974 best DB hits: BLAST: embl:CAB50919.1%3B (AJ243354) hypothetical protein [Pseudomonas%3B E%3D4e-05 pir:F83274%3B conserved hypothetical protein PA2982 [imported] -%3B E%3D7e-05 swissprot:O06434%3B EXBD_NEIGO BIOPOLYMER TRANSPORT EXBD PROTEIN%3B E%3D0.001 COG: PA2982%3B COG0848 Biopolymer transport protein%3B E%3D7e-06 PFAM: PF02472%3B Biopolymer transport protein ExbD/%3B E%3D8.9e-08 gene gene5955 http://www.ncbi.nlm.nih.gov/gene/?term=RB10704 RB10706 RB10706 RB10706 5815264 5818653 + serine/threonine protein kinase related protein- PQQ-dependent oxidoreductase best DB hits: BLAST: pir:H69064%3B serinethreonine protein kinase related protein -%3B E%3D0.045 COG: MTH1485%3B COG1520 Uncharacterized proteins of WD40-like repeat family%3B E%3D0.004 PFAM: PF01011%3B PQQ enzyme repeat%3B E%3D0.009 gene gene5956 http://www.ncbi.nlm.nih.gov/gene/?term=RB10706 RB10709 RB10709 RB10709 5818659 5821040 + periplasmic dipeptide transport protein precursor (dipeptide-binding protein) (DBP)- secreted%2C membrane associated or paryphoplasmic protein best DB hits: BLAST: ddbj:BAA15142.1%3B (D90789) Periplasmic dipeptide transport protein%3B E%3D0.15 swissprot:P76128%3B YDDS_ECOLI BINDING PROTEIN YDDS%3B E%3D0.15 gb:AAG56282.1%3B AE005357_2 (AE005357) hemin-binding%3B E%3D0.15 gene gene5957 http://www.ncbi.nlm.nih.gov/gene/?term=RB10709 RB10710 RB10710 RB10710 5821022 5822908 + signal peptide gene gene5958 http://www.ncbi.nlm.nih.gov/gene/?term=RB10710 RB10711 RB10711 ligA ligA 5822909 5825029 - DNA ligase PMID: 10407164 PMID: 10368271 best DB hits: BLAST: swissprot:O87703%3B DNLJ_BACST DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE%3B E%3D1e-135 swissprot:O31498%3B DNLJ_BACSU DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE%3B E%3D1e-135 swissprot:P15042%3B DNLJ_ECOLI DNA LIGASE (POLYDEOXYRIBONUCLEOTIDE%3B E%3D1e-133 COG: BS_yerG%3B COG0272 NAD-dependent DNA ligase (contains BRCT domain type%3B E%3D1e-136 lig%3B COG0272 NAD-dependent DNA ligase (contains BRCT domain type II)%3B E%3D1e-134 BH0649%3B COG0272 NAD-dependent DNA ligase (contains BRCT domain type%3B E%3D1e-134 PFAM: PF01653%3B NAD-dependent DNA ligase%3B E%3D4.3e-103 PF00633%3B Helix-hairpin-helix motif.%3B E%3D0.3 PF00533%3B BRCA1 C Terminus (BRCT) domain%3B E%3D9.8e-16 gene gene5959 http://www.ncbi.nlm.nih.gov/gene/?term=RB10711 RB10712 RB10712 RB10712 5824976 5825230 + hypothetical protein gene gene5960 http://www.ncbi.nlm.nih.gov/gene/?term=RB10712 RB10714 RB10714 RB10714 5825271 5825528 - signal peptide gene gene5961 http://www.ncbi.nlm.nih.gov/gene/?term=RB10714 RB10716 RB10716 RB10716 5825657 5827027 - PQQ-dependent dehydrogenase PMID: 11932238 best DB hits: BLAST: pir:C82804%3B conserved hypothetical protein XF0464 [imported] -%3B E%3D0.10 swissprot:Q9Z4J7%3B EXAA_PSEAE QUINOPROTEIN ETHANOL DEHYDROGENASE%3B E%3D0.29 pdb:1FLG%3B A Chain A%2C Crystal Structure Of The Quinoprotein Ethanol%3B E%3D0.29 COG: XF0464%3B COG1520 Uncharacterized proteins of WD40-like repeat family%3B E%3D0.009 PFAM: PF01011%3B PQQ enzyme repeat%3B E%3D0.0088 gene gene5962 http://www.ncbi.nlm.nih.gov/gene/?term=RB10716 RB10719 RB10719 RB10719 5827069 5827251 - hypothetical protein gene gene5963 http://www.ncbi.nlm.nih.gov/gene/?term=RB10719 RB1072 RB1072 RB1072 558070 558234 - hypothetical protein gene gene568 http://www.ncbi.nlm.nih.gov/gene/?term=RB1072 RB10721 RB10721 RB10721 5827264 5830629 + transmembrane channel protein best DB hits: BLAST: pir:S56387%3B hypothetical protein f1107 - Escherichia coli -----%3B E%3D9e-35 swissprot:P39285%3B YJEP_ECOLI HYPOTHETICAL 123.8 KD PROTEIN IN%3B E%3D2e-34 gb:AAG59358.1%3B AE005649_3 (AE005649) periplasmic binding%3B E%3D2e-34 COG: yjeP%3B COG3264 Small-conductance mechanosensitive channel%3B E%3D2e-35 PA1408_2%3B COG0668 Small-conductance mechanosensitive channel%3B E%3D2e-15 PFAM: PF00924%3B Uncharacterized protein famil%3B E%3D2.9e-36 gene gene5964 http://www.ncbi.nlm.nih.gov/gene/?term=RB10721 RB10727 RB10727 RB10727 5830775 5831605 + manganese-containing catalase PMID: 97094642 best DB hits: BLAST: ddbj:BAB05909.1%3B (AP001514) manganese-containing catalase%3B E%3D3e-62 swissprot:P80878%3B GS80_BACSU GENERAL STRESS PROTEIN 80 (GSP80)%3B E%3D1e-61 pir:C69854%3B conserved hypothetical protein yjqC - Bacillus subtilis%3B E%3D2e-56 gene gene5965 http://www.ncbi.nlm.nih.gov/gene/?term=RB10727 RB10728 RB10728 RB10728 5831649 5832047 + signal peptide gene gene5966 http://www.ncbi.nlm.nih.gov/gene/?term=RB10728 RB10729 RB10729 RB10729 5832028 5832246 + hypothetical protein gene gene5967 http://www.ncbi.nlm.nih.gov/gene/?term=RB10729 RB10730 RB10730 RB10730 5832453 5832590 + hypothetical protein gene gene5968 http://www.ncbi.nlm.nih.gov/gene/?term=RB10730 RB10731 RB10731 RB10731 5832569 5832682 + hypothetical protein gene gene5969 http://www.ncbi.nlm.nih.gov/gene/?term=RB10731 RB10733 RB10733 fdh fdh 5832679 5833848 + glutathione-dependent formaldehyde dehydrogenase PMID: 7926692 best DB hits: BLAST: swissprot:P47734%3B FADH_METMR GLUTATHIONE-DEPENDENT FORMALDEHYDE%3B E%3D1e-160 pir:A75593%3B alcohol dehydrogenase%2C zinc-containing - Deinococcus%3B E%3D1e-113 pir:B83373%3B probable alcohol dehydrogenase (Zn-dependent) PA2188%3B E%3D7e-84 COG: DRA0005%3B COG1063 Threonine dehydrogenase and related Zn-dependent%3B E%3D1e-114 sll0990%3B COG1062 Zn-dependent alcohol dehydrogenases%2C class III%3B E%3D7e-20 PFAM: PF00107%3B Zinc-binding dehydrogenases%3B E%3D3e-74 gene gene5970 http://www.ncbi.nlm.nih.gov/gene/?term=RB10733 RB10734 RB10734 RB10734 5833947 5834780 + signal peptide gene gene5971 http://www.ncbi.nlm.nih.gov/gene/?term=RB10734 RB10735 RB10735 RB10735 5834722 5835720 + hypothetical protein gene gene5972 http://www.ncbi.nlm.nih.gov/gene/?term=RB10735 RB10736 RB10736 RB10736 5835783 5835983 - hypothetical protein gene gene5973 http://www.ncbi.nlm.nih.gov/gene/?term=RB10736 RB1074 RB1074 rbsC rbsC 558194 559255 + ribose transport system permease PMID: 7921236 PMID: 9922273 best DB hits: BLAST: embl:CAB66286.1%3B (AL136519) bifunctional carbohydrate binding and%3B E%3D8e-26 swissprot:P36948%3B RBSC_BACSU RIBOSE TRANSPORT SYSTEM PERMEASE%3B E%3D1e-23 pir:S72834%3B hypothetical protein B1620_F2_68 - Mycobacterium leprae%3B E%3D2e-23 COG: BS_rbsC%3B COG1172 Ribose/xylose/arabinose/galactoside ABC-type%3B E%3D3e-23 yphD%3B COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport%3B E%3D3e-23 VCA0129%3B COG1172 Ribose/xylose/arabinose/galactoside ABC-type%3B E%3D3e-23 gene gene569 http://www.ncbi.nlm.nih.gov/gene/?term=RB1074 RB10740 RB10740 RB10740 5836025 5836372 - hypothetical protein gene gene5974 http://www.ncbi.nlm.nih.gov/gene/?term=RB10740 RB10741 RB10741 RB10741 5836327 5836653 - hypothetical protein gene gene5975 http://www.ncbi.nlm.nih.gov/gene/?term=RB10741 RB10742 RB10742 RB10742 5836632 5836955 - hypothetical protein gene gene5976 http://www.ncbi.nlm.nih.gov/gene/?term=RB10742 RB10743 RB10743 RB10743 5836648 5836938 + hypothetical protein gene gene5977 http://www.ncbi.nlm.nih.gov/gene/?term=RB10743 RB10745 RB10745 RB10745 5837016 5837183 + hypothetical protein gene gene5978 http://www.ncbi.nlm.nih.gov/gene/?term=RB10745 RB10746 RB10746 RB10746 5837169 5838017 - hypothetical protein gene gene5979 http://www.ncbi.nlm.nih.gov/gene/?term=RB10746 RB10749 RB10749 RB10749 5838000 5838227 + hypothetical protein gene gene5980 http://www.ncbi.nlm.nih.gov/gene/?term=RB10749 RB10750 RB10750 RB10750 5838326 5838454 - hypothetical protein gene gene5981 http://www.ncbi.nlm.nih.gov/gene/?term=RB10750 RB10751 RB10751 RB10751 5838430 5838561 + hypothetical protein gene gene5982 http://www.ncbi.nlm.nih.gov/gene/?term=RB10751 RB10752 RB10752 RB10752 5838612 5838740 - hypothetical protein gene gene5983 http://www.ncbi.nlm.nih.gov/gene/?term=RB10752 RB10753 RB10753 RB10753 5838793 5839371 + hypothetical protein gene gene5984 http://www.ncbi.nlm.nih.gov/gene/?term=RB10753 RB10754 RB10754 RB10754 5839301 5839483 + hypothetical protein gene gene5985 http://www.ncbi.nlm.nih.gov/gene/?term=RB10754 RB10755 RB10755 RB10755 5839451 5839576 - hypothetical protein gene gene5986 http://www.ncbi.nlm.nih.gov/gene/?term=RB10755 RB10757 RB10757 RB10757 5839548 5842730 - hypothetical protein gene gene5987 http://www.ncbi.nlm.nih.gov/gene/?term=RB10757 RB10761 RB10761 RB10761 5842631 5844493 - hypothetical protein gene gene5988 http://www.ncbi.nlm.nih.gov/gene/?term=RB10761 RB10763 RB10763 RB10763 5844490 5844687 - hypothetical protein gene gene5989 http://www.ncbi.nlm.nih.gov/gene/?term=RB10763 RB10764 RB10764 RB10764 5844684 5845271 - hypothetical protein gene gene5990 http://www.ncbi.nlm.nih.gov/gene/?term=RB10764 RB10766 RB10766 RB10766 5844819 5845508 + hypothetical protein gene gene5991 http://www.ncbi.nlm.nih.gov/gene/?term=RB10766 RB10767 RB10767 hsdS hsdS 5845264 5846916 - type I restriction enzyme EcoEI specificity protein PMID: 2642743 best DB hits: BLAST: swissprot:P19705%3B T1SE_ECOLI TYPE I RESTRICTION ENZYME ECOEI%3B E%3D5e-22 swissprot:P05719%3B T1SK_ECOLI TYPE I RESTRICTION ENZYME ECOKI%3B E%3D2e-18 swissprot:P06990%3B T1SB_ECOLI TYPE I RESTRICTION ENZYME ECOBI%3B E%3D1e-16 COG: hsdS%3B COG0732 Restriction endonuclease S subunits%3B E%3D1e-19 PFAM: PF01420%3B Type I restriction modification D%3B E%3D4.3e-18 gene gene5992 http://www.ncbi.nlm.nih.gov/gene/?term=RB10767 RB10768 RB10768 hsdM hsdM 5846913 5848436 - type I restriction enzyme StySPI M protein PMID: 1409708 PMID: 3025838 best DB hits: BLAST: swissprot:P07989%3B T1M_SALPO TYPE I RESTRICTION ENZYME STYSPI M%3B E%3D1e-135 gb:AAA23985.1%3B (L02508) restriction-modification enzyme type I M%3B E%3D1e-134 swissprot:P08957%3B T1MK_ECOLI TYPE I RESTRICTION ENZYME ECOKI M%3B E%3D1e-134 COG: hsdM%3B COG0286 Type I restriction-modification system%3B E%3D1e-135 PFAM: PF02506%3B Type I restriction modification s%3B E%3D0.00016 PF02384%3B N-6 DNA Methylase%3B E%3D7.2e-40 gene gene5993 http://www.ncbi.nlm.nih.gov/gene/?term=RB10768 RB1077 RB1077 RB1077 559252 560544 + hypothetical protein gene gene570 http://www.ncbi.nlm.nih.gov/gene/?term=RB1077 RB10770 RB10770 hsdR hsdR 5848458 5851874 - type I restriction enzyme EcoKI subunit R restriction endonuclease%3B the EcoKI enzyme recognizes 5'-AACN(6)GTGC-3'%3B subunit R is required for both nuclease and ATPase activities gene gene5994 http://www.ncbi.nlm.nih.gov/gene/?term=RB10770 RB10772 RB10772 RB10772 5851969 5852352 + hypothetical protein gene gene5995 http://www.ncbi.nlm.nih.gov/gene/?term=RB10772 RB10774 RB10774 RB10774 5852378 5852968 + hypothetical protein gene gene5996 http://www.ncbi.nlm.nih.gov/gene/?term=RB10774 RB10775 RB10775 RB10775 5852981 5853157 + hypothetical protein gene gene5997 http://www.ncbi.nlm.nih.gov/gene/?term=RB10775 RB10776 RB10776 RB10776 5853194 5853529 - hypothetical protein gene gene5998 http://www.ncbi.nlm.nih.gov/gene/?term=RB10776 RB10778 RB10778 RB10778 5853522 5855129 - ATP-binding protein best DB hits: BLAST: embl:CAC08270.1%3B (AL392146) ATP-binding protein%3B E%3D4e-28 gene gene5999 http://www.ncbi.nlm.nih.gov/gene/?term=RB10778 RB10780 RB10780 RB10780 5855126 5855425 - hypothetical protein gene gene6000 http://www.ncbi.nlm.nih.gov/gene/?term=RB10780 RB10783 RB10783 RB10783 5855472 5856872 - hypothetical protein gene gene6001 http://www.ncbi.nlm.nih.gov/gene/?term=RB10783 RB10785 RB10785 RB10785 5857037 5858326 - hypothetical protein best DB hits: PFAM: PF00589%3B Phage integrase%3B E%3D0.063 gene gene6002 http://www.ncbi.nlm.nih.gov/gene/?term=RB10785 RB10787 RB10787 RB10787 5858568 5860031 - glycerate kinase best DB hits: BLAST: pir:A72236%3B hypothetical protein TM1585 - Thermotoga maritima%3B E%3D8e-33 pir:B71162%3B hypothetical protein PH0495 - Pyrococcus horikoshii%3B E%3D6e-30 swissprot:Q44472%3B TUD4_AGRVI HYDROXYPYRUVATE REDUCTASE%3B E%3D5e-29 COG: TM1585%3B COG2379 glycerate kinase%3B E%3D8e-34 gene gene6004 http://www.ncbi.nlm.nih.gov/gene/?term=RB10787 RB10789 RB10789 RB10789 5859980 5860573 - alkyl hydroperoxide reductase best DB hits: BLAST: pir:S75290%3B hypothetical protein sll1289 - Synechocystis sp. (strain%3B E%3D2e-50 pir:G70687%3B hypothetical protein Rv1732c - Mycobacterium%3B E%3D2e-41 gb:AAF87891.1%3B AC015447_1 (AC015447) Hypothetical protein%3B E%3D3e-37 COG: sll1289%3B COG0526 Thiol-disulfide isomerase and thioredoxins%3B E%3D2e-51 Rv2521%3B COG1225 Peroxiredoxins%3B E%3D4e-06 NMB1958%3B COG0526 Thiol-disulfide isomerase and thioredoxins%3B E%3D0.004 PFAM: PF00578%3B AhpC/TSA family%3B E%3D0.0023 gene gene6005 http://www.ncbi.nlm.nih.gov/gene/?term=RB10789 RB1079 RB1079 adk adk 560614 561939 + adenylate kinase PMID: 2997739 PMID: 2844237 best DB hits: BLAST: swissprot:O24706%3B KAD_SYNP6 ADENYLATE KINASE (ATP-AMP%3B E%3D3e-08 gb:AAC41513.1%3B (L47150) adenylate kinase [Neisseria meningitidis]%3B E%3D2e-07 swissprot:P49980%3B KAD_NEIMA ADENYLATE KINASE (ATP-AMP%3B E%3D2e-07 COG: NMB0823%3B COG0563 Adenylate kinase and related kinases%3B E%3D2e-08 PFAM: PF00406%3B Adenylate kinase%3B E%3D0.062 gene gene571 http://www.ncbi.nlm.nih.gov/gene/?term=RB1079 RB10790 RB10790 fabI fabI 5860620 5861519 - enoyl-ACP reductase PMID: 8075395 PMID: 8953047 PMID: 10493822 best DB hits: BLAST: gb:AAD04184.1%3B (L10036) unknown [Nostoc sp. PCC 7120]%3B E%3D2e-60 swissprot:Q05069%3B FABI_ANASP ENOYL-[ACYL-CARRIER-PROTEIN]%3B E%3D2e-60 pir:H81284%3B probable enoyl-[acyl-carrier-protein] reductase [NADH]%3B E%3D1e-55 COG: Cj1400c%3B COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH)%3B E%3D9e-57 BH1511%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D2e-16 BS_yhdF%3B COG1028 Dehydrogenases with different specificities%3B E%3D2e-15 PFAM: PF00106%3B short chain dehydrogenase%3B E%3D0.019 PF00678%3B Short chain dehydrogenase/reduct%3B E%3D2.3e-07 gene gene6006 http://www.ncbi.nlm.nih.gov/gene/?term=RB10790 RB10793 RB10793 RB10793 5861653 5863617 + two-component response regulator best DB hits: BLAST: pir:C83055%3B probable two-component response regulator PA4726%3B E%3D2e-58 gb:AAG59807.1%3B AF305914_2 (AF305914) HydG [Klebsiella oxytoca]%3B E%3D2e-58 pir:T08624%3B probable NtrC-type response regulator - Eubacterium%3B E%3D3e-58 COG: PA4726%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D2e-59 PA2359%3B COG1221 NtrC family transcriptional regulators%2C ATPase%3B E%3D2e-58 VC1926%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D2e-57 PFAM: PF01590%3B GAF domain%3B E%3D1.1e-13 PF00158%3B Sigma-54 interaction domain%3B E%3D1e-128 gene gene6007 http://www.ncbi.nlm.nih.gov/gene/?term=RB10793 RB10797 RB10797 RB10797 5863798 5864613 + lysophospholipase esterase best DB hits: BLAST: pir:A71552%3B probable lysophospholipase esterase - Chlamydia%3B E%3D4e-08 pir:F81704%3B serine esterase%2C probable TC0413 [imported] - Chlamydia%3B E%3D6e-08 pir:D72098%3B serine esterase%2C probable CP0488 [imported] -%3B E%3D1e-06 COG: CT136%3B COG0400 Predicted esterase%3B E%3D4e-09 PFAM: PF02230%3B Phospholipase/Carboxylesterase%3B E%3D0.68 gene gene6008 http://www.ncbi.nlm.nih.gov/gene/?term=RB10797 RB10799 RB10799 RB10799 5864610 5867177 + hypothetical protein gene gene6009 http://www.ncbi.nlm.nih.gov/gene/?term=RB10799 RB10801 RB10801 RB10801 5867012 5869543 + transmembrane protein best DB hits: BLAST: embl:CAB37418.1%3B (AJ224978) ORF 245 [Salmonella typhimurium]%3B E%3D0.002 gb:AAG31761.1%3B (AF282268) unknown [Salmonella enterica serovar%3B E%3D0.23 gene gene6010 http://www.ncbi.nlm.nih.gov/gene/?term=RB10801 RB10805 RB10805 RB10805 5869621 5870781 + iron alcohol dehydrogenase PMID: 88038383 best DB hits: BLAST: swissprot:Q09669%3B ADHF_SCHPO IRON ALCOHOL DEHYDROGENASE%3B E%3D5e-46 gb:AAD43989.1%3B U59485_16 (U59485) AttL [Agrobacterium tumefaciens]%3B E%3D5e-45 gb:AAG58733.1%3B AE005585_7 (AE005585) oxidoreductase%3B E%3D6e-42 COG: yiaY%3B COG1454 Alcohol dehydrogenase IV%3B E%3D3e-42 PFAM: PF00465%3B Iron-containing alcohol dehydrogenas%3B E%3D3.3e-58 gene gene6011 http://www.ncbi.nlm.nih.gov/gene/?term=RB10805 RB10806 RB10806 RB10806 5870789 5871349 + hypothetical protein gene gene6012 http://www.ncbi.nlm.nih.gov/gene/?term=RB10806 RB10808 RB10808 RB10808 5871407 5871757 - hypothetical protein gene gene6013 http://www.ncbi.nlm.nih.gov/gene/?term=RB10808 RB1081 RB1081 RB1081 561926 562624 + nucleoside phosphorylase PMID: 8843436 best DB hits: BLAST: embl:CAB93401.1%3B (AL357524) hypothetical protein SCD12A.10c%3B E%3D2e-04 ddbj:BAB06409.1%3B (AP001516) BH2690~~unknown [Bacillus halodurans]%3B E%3D0.002 pir:T09897%3B hypothetical protein T22A6.170 - Arabidopsis thaliana%3B E%3D0.038 COG: BH2690%3B COG0775 Nucleoside phosphorylase%3B E%3D2e-04 gene gene572 http://www.ncbi.nlm.nih.gov/gene/?term=RB1081 RB10810 RB10810 RB10810 5871764 5872048 - hypothetical protein gene gene6014 http://www.ncbi.nlm.nih.gov/gene/?term=RB10810 RB10814 RB10814 RB10814 5872089 5873717 - signal peptide gene gene6015 http://www.ncbi.nlm.nih.gov/gene/?term=RB10814 RB10816 RB10816 holB holB 5873941 5875071 - DNA polymerase III%2C tau/gamma subunit best DB hits: BLAST: pir:C75278%3B DNA polymerase III%2C taugamma subunit - Deinococcus%3B E%3D2e-23 gb:AAB82595.1%3B (AF025391) DNA polymerase III holoenzyme tau%3B E%3D4e-22 pir:A70460%3B DNA polymerase III gamma subunit - Aquifex aeolicus%3B E%3D9e-21 COG: DR2410%3B COG2812 DNA polymerase III%2C gamma/tau subunits%3B E%3D2e-24 NMB0769%3B COG0470 ATPase involved in DNA replication%3B E%3D1e-19 Cj1157%3B COG2812 DNA polymerase III%2C gamma/tau subunits%3B E%3D4e-18 PFAM: PF00448%3B SRP54-type protein%2C GTPase domain%3B E%3D0.64 PF00004%3B ATPase associated with vario%3B E%3D0.0033 gene gene6016 http://www.ncbi.nlm.nih.gov/gene/?term=RB10816 RB10817 RB10817 rpiB rpiB 5875075 5875548 - ribose 5-phosphate epimerase (pentose phosphate) PMID: 8576032 best DB hits: BLAST: ddbj:BAB07486.1%3B (AP001519) ribose 5-phosphate epimerase (pentose%3B E%3D3e-30 pir:H70397%3B ribose 5-phosphate isomerase B - Aquifex aeolicus%3B E%3D9e-29 embl:CAA07515.1%3B (AJ007446) hypothetical protein [Thermotoga%3B E%3D7e-27 COG: BH3767%3B COG0698 Ribose 5-phosphate isomerase RpiB%3B E%3D2e-31 PFAM: PF02502%3B Ribose/Galactose Isomerase%3B E%3D1.1e-35 gene gene6017 http://www.ncbi.nlm.nih.gov/gene/?term=RB10817 RB10818 RB10818 RB10818 5875552 5876937 - low molecular weight protein-tyrosine-phosphatase ywlE PMID: 7798145 best DB hits: BLAST: swissprot:P39155%3B YWLE_BACSU LOW MOLECULAR WEIGHT%3B E%3D1e-13 swissprot:Q45408%3B EPSP_BURSO PROBABLE LOW MOLECULAR WEIGHT%3B E%3D3e-10 ddbj:BAB07488.1%3B (AP001519) protein-tyrosine-phosphatase%3B E%3D1e-09 COG: BS_ywlE%3B COG0394 Protein-tyrosine-phosphatase%3B E%3D1e-14 VC1079%3B COG0009 translation factor (SUA5)%3B E%3D2e-06 BH2998%3B COG0394 Protein-tyrosine-phosphatase%3B E%3D8e-05 PFAM: PF01300%3B SUA5/yciO/yrdC family%3B E%3D0.14 PF01451%3B Low molecular weight phosphoty%3B E%3D2.2e-28 gene gene6018 http://www.ncbi.nlm.nih.gov/gene/?term=RB10818 RB1082 RB1082 RB1082 562639 564681 - hypothetical protein gene gene573 http://www.ncbi.nlm.nih.gov/gene/?term=RB1082 RB10820 RB10820 RB10820 5876924 5877973 + ring finger protein HAC1 best DB hits: BLAST: swissprot:Q03601%3B YMB4_CAEEL HYPOTHETICAL 109.1 KDA PROTEIN%3B E%3D6e-23 ddbj:BAA83343.1%3B (AB030912) RING finger protein HAC1 [Mus%3B E%3D8e-16 gb:AAC17997.1%3B (AF036255) RING finger protein [Rattus norvegicus]%3B E%3D1e-15 PFAM: PF01436%3B NHL repeat%3B E%3D0.00042 gene gene6019 http://www.ncbi.nlm.nih.gov/gene/?term=RB10820 RB10821 RB10821 RB10821 5877977 5878132 + hypothetical protein gene gene6020 http://www.ncbi.nlm.nih.gov/gene/?term=RB10821 RB10823 RB10823 RB10823 5878083 5878859 - signal peptide gene gene6021 http://www.ncbi.nlm.nih.gov/gene/?term=RB10823 RB10824 RB10824 RB10824 5878877 5878999 + hypothetical protein gene gene6022 http://www.ncbi.nlm.nih.gov/gene/?term=RB10824 RB10825 RB10825 RB10825 5878996 5879280 + hypothetical protein gene gene6023 http://www.ncbi.nlm.nih.gov/gene/?term=RB10825 RB10826 RB10826 clpP clpP 5879229 5879912 + ATP-dependent Clp protease proteolytic subunit PMID: 9383193 best DB hits: BLAST: gb:AAD31002.1%3B AF127082_1 (AF127082) ATP-dependent protease%3B E%3D2e-52 swissprot:Q60107%3B CLPP_YEREN ATP-DEPENDENT CLP PROTEASE%3B E%3D1e-48 swissprot:Q9WZF9%3B CLPP_THEMA ATP-DEPENDENT CLP PROTEASE%3B E%3D1e-48 COG: TM0695%3B COG0740 Protease subunit of ATP-dependent Clp proteases%3B E%3D1e-49 PFAM: PF00574%3B Clp protease%3B E%3D5e-76 gene gene6024 http://www.ncbi.nlm.nih.gov/gene/?term=RB10826 RB10829 RB10829 clpP clpP 5879971 5880558 + ATP-dependent Clp protease proteolytic subunit PMID: 10360571 best DB hits: BLAST: swissprot:Q9WZF9%3B CLPP_THEMA ATP-DEPENDENT CLP PROTEASE%3B E%3D7e-69 swissprot:Q60107%3B CLPP_YEREN ATP-DEPENDENT CLP PROTEASE%3B E%3D5e-68 ddbj:BAA94668.1%3B (AB033628) serine protease subunit [Salmonella%3B E%3D9e-68 COG: TM0695%3B COG0740 Protease subunit of ATP-dependent Clp proteases%3B E%3D7e-70 PFAM: PF00378%3B Enoyl-CoA hydratase/isomerase fa%3B E%3D0.064 PF00574%3B Clp protease%3B E%3D1.5e-111 gene gene6025 http://www.ncbi.nlm.nih.gov/gene/?term=RB10829 RB10832 RB10832 RB10832 5880714 5880980 + hypothetical protein gene gene6027 http://www.ncbi.nlm.nih.gov/gene/?term=RB10832 RB10834 RB10834 argH argH 5881054 5883036 - argininosuccinate lyase PMID: 2121708 PMID: 10984043 best DB hits: BLAST: pir:B81175%3B argininosuccinate lyase NMB0637 [imported] - Neisseria%3B E%3D1e-110 pir:C81930%3B probable argininosuccinate lyase (EC 4.3.2.1) NMA0847%3B E%3D1e-110 swissprot:P50987%3B ARLY_PSEAE ARGININOSUCCINATE LYASE%3B E%3D1e-107 COG: NMB0637%3B COG0165 Argininosuccinate lyase%3B E%3D1e-111 PAB0829%3B COG0015 Adenylosuccinate lyase%3B E%3D5e-14 PFAM: PF00206%3B Lyase%3B E%3D3.2e-82 gene gene6028 http://www.ncbi.nlm.nih.gov/gene/?term=RB10834 RB10835 RB10835 RB10835 5882524 5885532 + hypothetical protein best DB hits: BLAST: gb:AAG17720.1%3B AF286114_1 (AF286114) PAK-like protein kinase%3B E%3D0.82 gene gene6029 http://www.ncbi.nlm.nih.gov/gene/?term=RB10835 RB10839 RB10839 RB10839 5885632 5887179 - serine/threonine protein kinase best DB hits: BLAST: pir:T36293%3B probable serinethreonine protein kinase - Streptomyces%3B E%3D0.15 gb:AAG20933.1%3B (AE005160) Vng6297c [Halobacterium sp. NRC-1]%3B E%3D0.24 pir:C82804%3B conserved hypothetical protein XF0464 [imported] -%3B E%3D0.56 PFAM: PF01011%3B PQQ enzyme repeat%3B E%3D0.045 gene gene6030 http://www.ncbi.nlm.nih.gov/gene/?term=RB10839 RB10841 RB10841 celD celD 5887124 5888455 + cellulose biosynthesis protein celD PMID: 7860585 best DB hits: BLAST: pir:I39710%3B cellulose biosynthesis protein celD - Agrobacterium%3B E%3D4e-05 embl:CAB92279.1%3B (AL356595) hypothetical protein [Streptomyces%3B E%3D0.001 PFAM: PF02572%3B ATP:corrinoid adenosyltransfer%3B E%3D0.094 gene gene6031 http://www.ncbi.nlm.nih.gov/gene/?term=RB10841 RB10844 RB10844 RB10844 5888421 5889197 + signal peptide best DB hits: PFAM: PF00583%3B Acetyltransferase (GNAT) family%3B E%3D2.3e-12 gene gene6032 http://www.ncbi.nlm.nih.gov/gene/?term=RB10844 RB10845 RB10845 RB10845 5889180 5890121 - hypothetical protein gene gene6033 http://www.ncbi.nlm.nih.gov/gene/?term=RB10845 RB10848 RB10848 RB10848 5890118 5890996 - hypothetical protein gene gene6034 http://www.ncbi.nlm.nih.gov/gene/?term=RB10848 RB10851 RB10851 RB10851 5890993 5891601 - hypothetical protein gene gene6035 http://www.ncbi.nlm.nih.gov/gene/?term=RB10851 RB10852 RB10852 gatB gatB 5891768 5893261 - aspartyl/glutamyl-tRNA amidotransferase subunit B allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases%3B reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA gene gene6036 http://www.ncbi.nlm.nih.gov/gene/?term=RB10852 RB10853 RB10853 RB10853 5893328 5894194 - lysophospholipase PMID: 9389475 best DB hits: BLAST: gb:AAB89497.1%3B (AE000982) lysophospholipase [Archaeoglobus%3B E%3D2e-10 pir:D69998%3B lysophospholipase homolog ytpA - Bacillus subtilis%3B E%3D1e-05 embl:CAA64113.1%3B (X94355) M5L [Cowpox virus] ----- embl:%3B E%3D2e-05 COG: AF1753%3B COG2267 Lysophospholipase%3B E%3D2e-11 PFAM: PF00561%3B alpha/beta hydrolase fold%3B E%3D6.7e-09 gene gene6037 http://www.ncbi.nlm.nih.gov/gene/?term=RB10853 RB10855 RB10855 RB10855 5894191 5895378 - muconate cycloisomerase I PMID: 8990288 best DB hits: BLAST: pir:H69855%3B chloromuconate cycloisomerase homolog ykfB - Bacillus%3B E%3D7e-22 pir:T51250%3B chloromuconate cycloisomerase homolog ykfB [imported] -%3B E%3D3e-19 ddbj:BAB06725.1%3B (AP001517) muconate cycloisomerase [Bacillus%3B E%3D3e-19 COG: BS_ykfB%3B COG1441 O-succinylbenzoate synthase and related enzymes%3B E%3D6e-23 PFAM: PF01188%3B Mandelate racemase / muconate%3B E%3D3.6e-27 gene gene6038 http://www.ncbi.nlm.nih.gov/gene/?term=RB10855 RB10858 RB10858 RB10858 5895365 5896372 - oxidoreductase PMID: 10984043 best DB hits: BLAST: pir:H83099%3B probable oxidoreductase PA4361 [imported] - Pseudomonas%3B E%3D3e-24 pir:T34919%3B oxidoreductase - Streptomyces coelicolor ----- embl:%3B E%3D3e-18 pir:E82632%3B NAD(P)H steroid dehydrogenase XF1825 [imported] -%3B E%3D9e-16 COG: PA4361%3B COG0451 Nucleoside-diphosphate-sugar epimerases%3B E%3D3e-25 slr0836%3B COG1088 dTDP-D-glucose 4%2C6-dehydratase%3B E%3D6e-04 Rv3784%3B COG0451 Nucleoside-diphosphate-sugar epimerases%3B E%3D0.004 PFAM: PF00106%3B short chain dehydrogenase%3B E%3D0.0018 PF01073%3B 3-beta hydroxysteroid dehydro%3B E%3D4.1e-08 PF01370%3B NAD dependent epimerase/dehyd%3B E%3D1.7e-06 gene gene6039 http://www.ncbi.nlm.nih.gov/gene/?term=RB10858 RB10860 RB10860 RB10860 5896538 5896828 - hypothetical protein gene gene6040 http://www.ncbi.nlm.nih.gov/gene/?term=RB10860 RB10861 RB10861 RB10861 5896851 5896991 + hypothetical protein gene gene6041 http://www.ncbi.nlm.nih.gov/gene/?term=RB10861 RB10862 RB10862 RB10862 5896997 5898142 + wall-associated protein PMID: 8316082 best DB hits: BLAST: swissprot:Q07833%3B WAPA_BACSU WALL-ASSOCIATED PROTEIN PRECURSOR%3B E%3D4e-09 pir:JS0625%3B rhsD protein - Escherichia coli ----- gb: AAA24544.1%3B E%3D1e-08 swissprot:P16919%3B RHSD_ECOLI RHSD PROTEIN PRECURSOR ----- pir:%3B E%3D1e-08 COG: BS_wapA%3B COG3209 Rhs family protein%3B E%3D4e-10 gene gene6042 http://www.ncbi.nlm.nih.gov/gene/?term=RB10862 RB10864 RB10864 RB10864 5898139 5899083 + hypothetical protein gene gene6043 http://www.ncbi.nlm.nih.gov/gene/?term=RB10864 RB10866 RB10866 RB10866 5899043 5899291 - hypothetical protein gene gene6044 http://www.ncbi.nlm.nih.gov/gene/?term=RB10866 RB10867 RB10867 RB10867 5899359 5899982 + signal peptide gene gene6045 http://www.ncbi.nlm.nih.gov/gene/?term=RB10867 RB10868 RB10868 RB10868 5899920 5900330 - hypothetical protein gene gene6046 http://www.ncbi.nlm.nih.gov/gene/?term=RB10868 RB10871 RB10871 RB10871 5900233 5900871 - hypothetical protein gene gene6047 http://www.ncbi.nlm.nih.gov/gene/?term=RB10871 RB10874 RB10874 RB10874 5900865 5901032 - hypothetical protein gene gene6048 http://www.ncbi.nlm.nih.gov/gene/?term=RB10874 RB10875 RB10875 RB10875 5901043 5901192 - hypothetical protein gene gene6049 http://www.ncbi.nlm.nih.gov/gene/?term=RB10875 RB10876 RB10876 uvrA uvrA 5901251 5903770 - excinuclease ABC subunit A PMID: 12000953 best DB hits: BLAST: swissprot:Q9Z507%3B UVRA_STRCO EXCINUCLEASE ABC SUBUNIT A -----%3B E%3D1e-132 swissprot:O34863%3B UVRA_BACSU EXCINUCLEASE ABC SUBUNIT A -----%3B E%3D1e-131 swissprot:Q56242%3B UVRA_THETH EXCINUCLEASE ABC SUBUNIT A -----%3B E%3D1e-130 COG: BS_uvrA%3B COG0178 Excinuclease ATPase subunit%3B E%3D1e-132 PFAM: PF01443%3B Viral (Superfamily 1) RNA hel%3B E%3D0.46 PF00005%3B ABC transporter%3B E%3D0.2 gene gene6050 http://www.ncbi.nlm.nih.gov/gene/?term=RB10876 RB10877 RB10877 RB10877 5903767 5905128 - hypothetical protein best DB hits: PFAM: PF02517%3B CAAX amino terminal protease%3B E%3D0.2 gene gene6051 http://www.ncbi.nlm.nih.gov/gene/?term=RB10877 RB10878 RB10878 pgsA pgsA 5905125 5905859 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase PMID: 7750561 best DB hits: BLAST: ddbj:BAB06105.1%3B (AP001515) phosphatidylglycerophosphate synthase%3B E%3D7e-20 pir:I39950%3B pgsA protein - Bacillus subtilis ----- ddbj:%3B E%3D5e-16 swissprot:P46322%3B PGSA_BACSU%3B E%3D5e-15 COG: BH2386%3B COG0558 Phosphatidylglycerophosphate synthase%3B E%3D7e-21 PFAM: PF01066%3B CDP-alcohol phosphatidyltrans%3B E%3D1.1e-21 gene gene6052 http://www.ncbi.nlm.nih.gov/gene/?term=RB10878 RB1088 RB1088 RB1088 564890 565975 + signal peptide gene gene574 http://www.ncbi.nlm.nih.gov/gene/?term=RB1088 RB10880 RB10880 RB10880 5905907 5907340 - 2-methylthioadenine synthetase PMID: 9537320 best DB hits: BLAST: swissprot:O67016%3B Y849_AQUAE HYPOTHETICAL PROTEIN AQ_849 -----%3B E%3D1e-87 swissprot:Q55803%3B Y082_SYNY3 HYPOTHETICAL 49.4 KD PROTEIN SLR0082%3B E%3D4e-84 swissprot:P75802%3B YLIG_ECOLI HYPOTHETICAL 49.6 KDA PROTEIN IN%3B E%3D1e-76 COG: aq_849%3B COG0621 Fe-S oxidoreductases family 1%3B E%3D9e-89 PFAM: PF00919%3B Uncharacterized protein family UPF00%3B E%3D3.2e-35 gene gene6053 http://www.ncbi.nlm.nih.gov/gene/?term=RB10880 RB10881 RB10881 RB10881 5907337 5907645 - hypothetical protein gene gene6054 http://www.ncbi.nlm.nih.gov/gene/?term=RB10881 RB10883 RB10883 lysS lysS 5907588 5909228 + lysyl-tRNA synthetase best DB hits: BLAST: swissprot:Q53638%3B SYK_STAAU LYSYL-TRNA SYNTHETASE (LYSINE--TRNA%3B E%3D1e-116 swissprot:P37477%3B SYK_BACSU LYSYL-TRNA SYNTHETASE (LYSINE--TRNA%3B E%3D1e-114 swissprot:Q9KGG4%3B SYK_BACHD LYSYL-TRNA SYNTHETASE (LYSINE--TRNA%3B E%3D1e-111 COG: BS_lysS%3B COG1190 Lysyl-tRNA synthetase class II%3B E%3D1e-115 PFAM: PF01336%3B OB-fold nucleic acid binding dom%3B E%3D5.9e-12 PF01409%3B tRNA synthetases class II (F)%3B E%3D0.46 PF00152%3B tRNA synthetases class II (D%2C K%3B E%3D7e-136 gene gene6055 http://www.ncbi.nlm.nih.gov/gene/?term=RB10883 RB10884 RB10884 RB10884 5909299 5909517 - hypothetical protein gene gene6056 http://www.ncbi.nlm.nih.gov/gene/?term=RB10884 RB10886 RB10886 RB10886 5909525 5909932 - signal peptide gene gene6057 http://www.ncbi.nlm.nih.gov/gene/?term=RB10886 RB10887 RB10887 RB10887 5909943 5911772 - carbamyltransferase BlmD PMID: 9163424 best DB hits: BLAST: swissprot:P74178%3B YB78_SYNY3 HYPOTHETICAL 69.1 KD PROTEIN SLL1178%3B E%3D1e-175 gb:AAK00162.1%3B AF222753_17 (AF222753) nodulation protein NolO%3B E%3D8e-78 swissprot:P55474%3B NOLO_RHISN NODULATION PROTEIN NOLNO -----%3B E%3D1e-76 COG: sll1178%3B COG2192 Predicted carbamoyl transferase%2C NodU family%3B E%3D1e-176 PFAM: PF02543%3B Carbamoyltransferase%3B E%3D4.4e-130 gene gene6058 http://www.ncbi.nlm.nih.gov/gene/?term=RB10887 RB10890 RB10890 RB10890 5911782 5912018 - hypothetical protein gene gene6059 http://www.ncbi.nlm.nih.gov/gene/?term=RB10890 RB10891 RB10891 RB10891 5911978 5912151 + hypothetical protein gene gene6060 http://www.ncbi.nlm.nih.gov/gene/?term=RB10891 RB10892 RB10892 RB10892 5912176 5914878 + ammonium transporter PMID: 8590279 best DB hits: BLAST: swissprot:P54148%3B Y537_SYNY3 AMMONIUM TRANSPORTER SLL0537%3B E%3D9e-88 swissprot:P54147%3B Y108_SYNY3 AMMONIUM TRANSPORTER SLL0108%3B E%3D1e-70 gb:AAB89503.1%3B (AE000982) ammonium transporter (amt-2)%3B E%3D2e-66 COG: sll0537%3B COG0004 Ammonia permeases%3B E%3D8e-89 VC1084%3B COG0642 Sensory transduction histidine kinases%3B E%3D2e-33 MTH661%3B COG0004 Ammonia permeases%3B E%3D1e-32 PFAM: PF00909%3B Ammonium Transporter Family%3B E%3D1.9e-133 PF00512%3B His Kinase A (phosphoacceptor%3B E%3D6.1e-05 PF02518%3B Histidine kinase-%2C DNA gyrase%3B E%3D3.7e-25 gene gene6061 http://www.ncbi.nlm.nih.gov/gene/?term=RB10892 RB10893 RB10893 RB10893 5914894 5915067 + hypothetical protein gene gene6062 http://www.ncbi.nlm.nih.gov/gene/?term=RB10893 RB10894 RB10894 thrC thrC 5915024 5916394 - threonine synthase PMID: 8706836 best DB hits: BLAST: pir:S71362%3B threonine synthase (EC 4.2.99.2) precursor - Arabidopsis%3B E%3D1e-126 pir:T08545%3B threonine synthase (EC 4.2.99.2) precursor - Arabidopsis%3B E%3D1e-126 gb:AAF74984.1%3B AF082894_1 (AF082894) threonine synthase [Solanum%3B E%3D1e-125 COG: MJ1465%3B COG0498 Threonine synthase%3B E%3D7e-58 PFAM: PF00291%3B Pyridoxal-phosphate dependent enzyme%3B E%3D2.1e-62 gene gene6063 http://www.ncbi.nlm.nih.gov/gene/?term=RB10894 RB10895 RB10895 RB10895 5916348 5917151 + hypothetical protein gene gene6064 http://www.ncbi.nlm.nih.gov/gene/?term=RB10895 RB10896 RB10896 RB10896 5916555 5917040 - signal peptide gene gene6065 http://www.ncbi.nlm.nih.gov/gene/?term=RB10896 RB10898 RB10898 RB10898 5917309 5918409 + sugar ABC transporter%2C periplasmic sugar-binding protein PMID: 10360571 best DB hits: BLAST: pir:A72417%3B sugar ABC transporter%2C periplasmic sugar-binding protein%3B E%3D2e-17 ddbj:BAB07559.1%3B (AP001520) sugar ABC transporter (sugar-binding%3B E%3D3e-15 ddbj:BAB07167.1%3B (AP001518) sugar ABC transporter (sugar-binding%3B E%3D4e-09 COG: TM0114%3B COG1879 Periplasmic sugar-binding proteins%3B E%3D2e-18 gene gene6066 http://www.ncbi.nlm.nih.gov/gene/?term=RB10898 RB1090 RB1090 RB1090 565046 566227 - hypothetical protein gene gene575 http://www.ncbi.nlm.nih.gov/gene/?term=RB1090 RB10902 RB10902 RB10902 5918562 5918819 + hypothetical protein gene gene6067 http://www.ncbi.nlm.nih.gov/gene/?term=RB10902 RB10905 RB10905 RB10905 5918945 5919703 - phosphoesterase PMID: 9679194 best DB hits: BLAST: pir:H71040%3B probable phosphoesterase (EC 3.1.-.-) PH1616 -%3B E%3D1e-26 swissprot:Q58322%3B Y912_METJA HYPOTHETICAL PROTEIN MJ0912 -----%3B E%3D8e-25 pir:A75174%3B hypothetical protein PAB1999 - Pyrococcus abyssi (strain%3B E%3D2e-24 COG: PH1616%3B COG0639 Diadenosine tetraphosphatase and related%3B E%3D1e-27 gene gene6068 http://www.ncbi.nlm.nih.gov/gene/?term=RB10905 RB10907 RB10907 RB10907 5919708 5920466 - phosphoesterase best DB hits: BLAST: swissprot:Q58322%3B Y912_METJA HYPOTHETICAL PROTEIN MJ0912 -----%3B E%3D7e-31 pir:H71040%3B probable phosphoesterase (EC 3.1.-.-) PH1616 -%3B E%3D2e-26 pir:A75174%3B hypothetical protein PAB1999 - Pyrococcus abyssi (strain%3B E%3D4e-25 COG: MJ0912%3B COG0639 Diadenosine tetraphosphatase and related%3B E%3D7e-32 PFAM: PF01143%3B Uncharacterized phosphoesterase fami%3B E%3D0.086 gene gene6069 http://www.ncbi.nlm.nih.gov/gene/?term=RB10907 RB10909 RB10909 RB10909 5920575 5921378 + hypothetical protein gene gene6070 http://www.ncbi.nlm.nih.gov/gene/?term=RB10909 RB10911 RB10911 RB10911 5921462 5923135 - hypothetical protein best DB hits: BLAST: gb:AAA96788.1%3B (U51683) OMP1 precursor [Brucella abortus]%3B E%3D1e-14 pir:C70412%3B outer membrane protein - Aquifex aeolicus ----- gb:%3B E%3D5e-12 pir:H83190%3B probable outer membrane protein PA3648 [imported] -%3B E%3D1e-10 COG: aq_1300%3B COG0729 Predicted outer membrane protein%3B E%3D5e-13 PFAM: PF01103%3B Bacterial surface antigen%3B E%3D0.00093 gene gene6071 http://www.ncbi.nlm.nih.gov/gene/?term=RB10911 RB10916 RB10916 RB10916 5923132 5924643 - hypothetical protein PMID: 9403685 best DB hits: BLAST: pir:B70199%3B outer membrane protein homolog - Lyme disease spirochete%3B E%3D6e-17 pir:C70412%3B outer membrane protein - Aquifex aeolicus ----- gb:%3B E%3D3e-16 gb:AAA96788.1%3B (U51683) OMP1 precursor [Brucella abortus]%3B E%3D2e-15 COG: BB0795%3B COG0729 Predicted outer membrane protein%3B E%3D6e-18 PFAM: PF01103%3B Bacterial surface antigen%3B E%3D1.3e-16 gene gene6072 http://www.ncbi.nlm.nih.gov/gene/?term=RB10916 RB10919 RB10919 RB10919 5924636 5924824 + hypothetical protein gene gene6073 http://www.ncbi.nlm.nih.gov/gene/?term=RB10919 RB1092 RB1092 faoA faoA 565978 567168 + fatty oxidation complex alpha subunit PMID: 1607366 best DB hits: BLAST: swissprot:P28793%3B FAOB_PSEFR FATTY OXIDATION COMPLEX ALPHA SUBUNIT%3B E%3D6e-27 pir:G83269%3B fatty-acid oxidation complex alpha-subunit PA3014%3B E%3D2e-25 pir:T34706%3B fatty acid oxidation complex alpha-subunit -%3B E%3D1e-24 COG: PA3014_2%3B COG1250 3-Hydroxyacyl-CoA dehydrogenase%3B E%3D2e-26 PFAM: PF02737%3B 3-hydroxyacyl-CoA dehydrogenase%2C NAD%3B E%3D6.3e-15 PF00725%3B 3-hydroxyacyl-CoA dehydrogenase%2C C-t%3B E%3D7.2e-14 gene gene576 http://www.ncbi.nlm.nih.gov/gene/?term=RB1092 RB10920 RB10920 RB10920 5924859 5925719 - hypothetical protein gene gene6074 http://www.ncbi.nlm.nih.gov/gene/?term=RB10920 RB10921 RB10921 RB10921 5925810 5926664 - transcriptional regulator Y4PA PMID: 9163424 best DB hits: BLAST: swissprot:P55607%3B Y4OV_RHISN HYPOTHETICAL 30.2 KD PROTEIN Y4OV%3B E%3D8e-81 ddbj:BAB10918.1%3B (AB013389) gene_id:K1F13.7~~similar to unknown%3B E%3D6e-75 gb:AAG60875.1%3B AF322012_180 (AF322013) ID407 [Bradyrhizobium%3B E%3D2e-29 PFAM: PF01884%3B PcrB family%3B E%3D0.34 gene gene6075 http://www.ncbi.nlm.nih.gov/gene/?term=RB10921 RB10922 RB10922 RB10922 5926686 5927933 - hypothetical protein best DB hits: BLAST: swissprot:P55606%3B Y4OU_RHISN HYPOTHETICAL PROTEIN Y4OU PRECURSOR%3B E%3D3e-85 ddbj:BAB10918.1%3B (AB013389) gene_id:K1F13.7~~similar to unknown%3B E%3D1e-80 gene gene6076 http://www.ncbi.nlm.nih.gov/gene/?term=RB10922 RB10923 RB10923 RB10923 5927928 5928035 + hypothetical protein gene gene6077 http://www.ncbi.nlm.nih.gov/gene/?term=RB10923 RB10924 RB10924 RB10924 5928118 5933337 - sensor/response regulator hybrid PMID: 8497190 best DB hits: BLAST: swissprot:Q02998%3B YH19_RHOCA HYPOTHETICAL 104.1 KD PROTEIN IN HYPE%3B E%3D2e-90 pir:H83132%3B probable sensorresponse regulator hybrid PA4112%3B E%3D7e-67 pir:S75136%3B sensory transduction histidine kinase slr2104 -%3B E%3D4e-64 COG: VC1349_2%3B COG0642 Sensory transduction histidine kinases%3B E%3D2e-49 PFAM: PF01339%3B CheB methylesterase%3B E%3D1.5e-09 PF01739%3B CheR methyltransferase%3B E%3D7e-68 PF00989%3B PAS domain%3B E%3D1.2e-05 gene gene6078 http://www.ncbi.nlm.nih.gov/gene/?term=RB10924 RB10926 RB10926 RB10926 5933431 5933547 - hypothetical protein gene gene6079 http://www.ncbi.nlm.nih.gov/gene/?term=RB10926 RB10927 RB10927 RB10927 5933490 5933741 + hypothetical protein gene gene6080 http://www.ncbi.nlm.nih.gov/gene/?term=RB10927 RB10929 RB10929 RB10929 5933631 5933993 - hypothetical protein gene gene6081 http://www.ncbi.nlm.nih.gov/gene/?term=RB10929 RB1093 RB1093 RB1093 567152 567412 - hypothetical protein gene gene577 http://www.ncbi.nlm.nih.gov/gene/?term=RB1093 RB10931 RB10931 RB10931 5933742 5933906 + hypothetical protein gene gene6082 http://www.ncbi.nlm.nih.gov/gene/?term=RB10931 RB10932 RB10932 RB10932 5933872 5934069 + signal peptide gene gene6083 http://www.ncbi.nlm.nih.gov/gene/?term=RB10932 RB10934 RB10934 RB10934 5934135 5934341 + hypothetical protein best DB hits: BLAST: pir:F83054%3B conserved hypothetical protein PA4738 [imported] -%3B E%3D1e-05 swissprot:P32691%3B YJBJ_ECOLI PROTEIN YJBJ ----- pir: D65212%3B E%3D2e-05 embl:CAB98302.2%3B (AL390114) probable 8.3 Kd protein in dinf-qor%3B E%3D0.032 COG: PA4738%3B COG3237 Uncharacterized BCR%3B E%3D1e-06 gene gene6084 http://www.ncbi.nlm.nih.gov/gene/?term=RB10934 RB10936 RB10936 RB10936 5934348 5934518 + hypothetical protein gene gene6085 http://www.ncbi.nlm.nih.gov/gene/?term=RB10936 RB10937 RB10937 RB10937 5934376 5934561 - hypothetical protein gene gene6086 http://www.ncbi.nlm.nih.gov/gene/?term=RB10937 RB10939 RB10939 RB10939 5934628 5934816 + transcriptional regulator PMID: 10567266 best DB hits: BLAST: pir:H75351%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D3e-06 gb:AAG20306.1%3B (AE005104) Vng2170h [Halobacterium sp. NRC-1]%3B E%3D0.81 COG: DR1804%3B COG1396 Predicted transcriptional regulators%3B E%3D3e-07 gene gene6087 http://www.ncbi.nlm.nih.gov/gene/?term=RB10939 RB10940 RB10940 RB10940 5934856 5935407 + acetyltransferase PMID: 11248100 best DB hits: BLAST: gb:AAK03637.1%3B (AE006192) unknown [Pasteurella multocida]%3B E%3D7e-25 gb:AAG50796.1%3B AC074309_13 (AC074309) unknown protein [Arabidopsis%3B E%3D0.009 pir:T36821%3B hypothetical protein SCI35.08c - Streptomyces coelicolor%3B E%3D0.15 PFAM: PF00583%3B Acetyltransferase (GNAT) family%3B E%3D6.2e-09 gene gene6088 http://www.ncbi.nlm.nih.gov/gene/?term=RB10940 RB10942 RB10942 ogt ogt 5935417 5937012 - TPR repeat-containing protein PMID: 9083067 best DB hits: BLAST: swissprot:P56558%3B OGT1_RAT UDP-N-ACETYLGLUCOSAMINE--PEPTIDE%3B E%3D9e-05 gb:AAF31458.1%3B (AF223393) HRNT1 [Homo sapiens]%3B E%3D9e-05 gb:AAA62535.1%3B (U21320) contains TPR domain-like repeats%3B E%3D0.003 PFAM: PF00515%3B TPR Domain%3B E%3D0.00017 gene gene6089 http://www.ncbi.nlm.nih.gov/gene/?term=RB10942 RB10944 RB10944 RB10944 5937047 5937241 - hypothetical protein gene gene6090 http://www.ncbi.nlm.nih.gov/gene/?term=RB10944 RB10945 RB10945 RB10945 5937215 5938453 + hypothetical protein gene gene6091 http://www.ncbi.nlm.nih.gov/gene/?term=RB10945 RB10948 RB10948 RB10948 5938575 5939036 + hypothetical protein best DB hits: BLAST: pir:T30321%3B hypothetical protein - Lactococcus lactis plasmid%3B E%3D0.015 gene gene6092 http://www.ncbi.nlm.nih.gov/gene/?term=RB10948 RB1095 RB1095 RB1095 567469 569046 + hypothetical protein gene gene578 http://www.ncbi.nlm.nih.gov/gene/?term=RB1095 RB10950 RB10950 RB10950 5939124 5939825 + signal peptide gene gene6093 http://www.ncbi.nlm.nih.gov/gene/?term=RB10950 RB10951 RB10951 RB10951 5939927 5940232 - hypothetical protein gene gene6094 http://www.ncbi.nlm.nih.gov/gene/?term=RB10951 RB10954 RB10954 RB10954 5940318 5940749 - hypothetical protein gene gene6095 http://www.ncbi.nlm.nih.gov/gene/?term=RB10954 RB10956 RB10956 RB10956 5940336 5940689 + hypothetical protein gene gene6096 http://www.ncbi.nlm.nih.gov/gene/?term=RB10956 RB10957 RB10957 RB10957 5940708 5941007 + hypothetical protein best DB hits: BLAST: pir:F75258%3B hypothetical protein - Deinococcus radiodurans (strain%3B E%3D3e-16 pir:T35249%3B hypothetical protein SC5F2A.07 - Streptomyces coelicolor%3B E%3D4e-04 gene gene6097 http://www.ncbi.nlm.nih.gov/gene/?term=RB10957 RB10958 RB10958 RB10958 5941015 5941491 + hypothetical protein best DB hits: PFAM: PF01226%3B Formate/nitrite transporter%3B E%3D0.8 gene gene6098 http://www.ncbi.nlm.nih.gov/gene/?term=RB10958 RB10960 RB10960 RB10960 5941602 5942021 + transmembrane protein best DB hits: BLAST: pir:D75324%3B hypothetical protein - Deinococcus radiodurans (strain%3B E%3D7e-14 pir:C83546%3B hypothetical protein PA0806 [imported] - Pseudomonas%3B E%3D9e-11 embl:CAB92195.1%3B (AL356592) membrane protein.%3B E%3D0.13 gene gene6099 http://www.ncbi.nlm.nih.gov/gene/?term=RB10960 RB10965 RB10965 gufA gufA 5942116 5942730 + divalent heavy-metal cations transporter best DB hits: BLAST: pir:C70127%3B gufA protein homolog - Lyme disease spirochete -----%3B E%3D2e-05 pir:T29905%3B hypothetical protein F59A3.4 - Caenorhabditis elegans%3B E%3D0.002 pir:E75052%3B gufA protein homolog PAB1443 - Pyrococcus abyssi (strain%3B E%3D0.027 COG: BB0219%3B COG0428 Predicted divalent heavy-metal cations transporter%3B E%3D2e-06 gene gene6100 http://www.ncbi.nlm.nih.gov/gene/?term=RB10965 RB10966 RB10966 RB10966 5942752 5942934 - signal peptide best DB hits: BLAST: ddbj:BAA95845.1%3B (AP002070) Similar to Arabidopsis thaliana low%3B E%3D0.053 gb:AAF26091.1%3B AC012393_17 (AC012393) low temperature and salt%3B E%3D0.069 gb:AAF26090.1%3B AC012393_16 (AC012393) low temperature and salt%3B E%3D0.088 PFAM: PF01679%3B Uncharacterized protein family UPF00%3B E%3D1.8e-13 gene gene6101 http://www.ncbi.nlm.nih.gov/gene/?term=RB10966 RB10967 RB10967 RB10967 5943015 5944040 - oxidoreductase best DB hits: BLAST: embl:CAB62729.1%3B (AL133423) oxidoreductase [Streptomyces%3B E%3D1e-81 gb:AAG19273.1%3B (AE005023) quinone oxidoreductase%3B YfmJ%3B E%3D1e-77 pir:A69813%3B quinone oxidoreductase homolog yfmJ - Bacillus subtilis%3B E%3D6e-76 COG: VNG0815G%3B COG2130 NADP-dependent oxidoreductases%3B E%3D1e-78 PA5234%3B COG0604 NADPH:quinone reductase and related Zn-dependent%3B E%3D5e-10 Ta0841%3B COG1064 Zn-dependent alcohol dehydrogenases%3B E%3D2e-05 PFAM: PF00022%3B Actin%3B E%3D0.28 PF00107%3B Zinc-binding dehydrogenases%3B E%3D7.7e-37 gene gene6102 http://www.ncbi.nlm.nih.gov/gene/?term=RB10967 RB10968 RB10968 gabD gabD 5944044 5945417 - succinate-semialdehyde dehydrogenase [NADP+] PMID: 8297211 best DB hits: BLAST: swissprot:O32507%3B GABD_DEIRA SUCCINATE-SEMIALDEHYDE DEHYDROGENASE%3B E%3D1e-118 gb:AAD19405.1%3B (AF102543) succinic semialdehyde dehydrogenase%3B E%3D1e-111 swissprot:Q55585%3B GABD_SYNY3 PROBABLE SUCCINATE-SEMIALDEHYDE%3B E%3D1e-107 COG: DRA0343%3B COG1012 NAD-dependent aldehyde dehydrogenases%3B E%3D1e-119 PFAM: PF00171%3B Aldehyde dehydrogenase%3B E%3D2.7e-118 gene gene6103 http://www.ncbi.nlm.nih.gov/gene/?term=RB10968 RB1097 RB1097 RB1097 569067 570281 - hypothetical protein PMID: 11889109 gene gene579 http://www.ncbi.nlm.nih.gov/gene/?term=RB1097 RB10971 RB10971 dltE dltE 5945495 5946406 - short-chain dehydrogenase best DB hits: BLAST: pir:H83564%3B probable short-chain dehydrogenase PA0658 [imported] -%3B E%3D1e-42 pir:E70761%3B probable ketoacyl reductase - Mycobacterium tuberculosis%3B E%3D8e-38 gb:AAK03000.1%3B (AE006130) unknown [Pasteurella multocida]%3B E%3D4e-34 COG: PA0658%3B COG0300 Short-chain dehydrogenases of various substrate%3B E%3D1e-43 Rv1050%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D5e-23 YMR226c%3B COG0300 Short-chain dehydrogenases of various substrate%3B E%3D2e-22 PFAM: PF00106%3B short chain dehydrogenase%3B E%3D1.6e-45 gene gene6104 http://www.ncbi.nlm.nih.gov/gene/?term=RB10971 RB10973 RB10973 RB10973 5946410 5946523 - hypothetical protein gene gene6105 http://www.ncbi.nlm.nih.gov/gene/?term=RB10973 RB10974 RB10974 RB10974 5946559 5947263 + hypothetical protein gene gene6106 http://www.ncbi.nlm.nih.gov/gene/?term=RB10974 RB10978 RB10978 sugE sugE 5947515 5947883 + sugE protein- transmembrane protein PMID: 8096175 best DB hits: BLAST: pir:S36340%3B sugE protein - Escherichia coli ----- embl:%3B E%3D6e-17 gb:AAG59349.1%3B AE005648_11 (AE005648) suppresses groEL%2C may be%3B E%3D4e-16 pir:S56376%3B sugES protein - Escherichia coli ----- gb:%3B E%3D6e-16 COG: sugE%3B COG2076 Membrane transporters of cations and cationic drugs%3B E%3D6e-17 NMB0393%3B COG2076 Membrane transporters of cations and cationic%3B E%3D6e-04 BH0840%3B COG2076 Membrane transporters of cations and cationic drugs%3B E%3D0.004 PFAM: PF00893%3B Integral membrane protein DUF7%3B E%3D3e-37 gene gene6107 http://www.ncbi.nlm.nih.gov/gene/?term=RB10978 RB10979 RB10979 RB10979 5947956 5948414 - hypothetical protein best DB hits: BLAST: pir:S62728%3B transposase - phage D3112 ----- embl: CAA60956.1%3B E%3D0.69 gene gene6108 http://www.ncbi.nlm.nih.gov/gene/?term=RB10979 RB10980 RB10980 RB10980 5948527 5948844 - hypothetical protein gene gene6109 http://www.ncbi.nlm.nih.gov/gene/?term=RB10980 RB10981 RB10981 mtrC mtrC 5948851 5950653 + membrane fusion protein mtrC PMID: 8196548 best DB hits: BLAST: swissprot:P43505%3B MTRC_NEIGO MEMBRANE FUSION PROTEIN MTRC%3B E%3D3e-07 pir:S40252%3B MtrC protein - Neisseria gonorrhoeae ----- pir:%3B E%3D4e-07 pir:H81825%3B membrane fusion protein NMA1970 [imported] - Neisseria%3B E%3D1e-06 COG: NMB1716%3B COG0845 Membrane-fusion protein%3B E%3D1e-07 PA2430%3B COG1566 Multidrug resistance efflux pump%3B E%3D5e-05 PA4599%3B COG0845 Membrane-fusion protein%3B E%3D6e-04 PFAM: PF00529%3B HlyD family secretion protein%3B E%3D0.061 gene gene6110 http://www.ncbi.nlm.nih.gov/gene/?term=RB10981 RB10984 RB10984 acrD acrD 5950650 5953997 + RND efflux transporter best DB hits: BLAST: pir:B83627%3B probable RND efflux transporter PA0158 [imported] -%3B E%3D9e-84 pir:F82829%3B acriflavin resistance protein XF0243 [imported] - Xylella%3B E%3D1e-81 pir:B82604%3B cation efflux system protein XF2083 [imported] - Xylella%3B E%3D6e-77 COG: PA0158%3B COG0841 Cation/multidrug efflux pump%3B E%3D8e-85 PFAM: PF00873%3B AcrB/AcrD/AcrF family%3B E%3D8.1e-17 gene gene6111 http://www.ncbi.nlm.nih.gov/gene/?term=RB10984 RB10985 RB10985 RB10985 5954010 5954633 - hypothetical protein best DB hits: BLAST: ddbj:BAB06554.1%3B (AP001516) BH2835~~unknown conserved protein%3B E%3D5e-27 swissprot:P54168%3B YPGQ_BACSU HYPOTHETICAL 23.1 KD PROTEIN IN%3B E%3D7e-22 gb:AAK04163.1%3B AE006245_2 (AE006245) conserved hypothetical%3B E%3D6e-17 COG: BH2835%3B COG1418 Predicted HD superfamily hydrolase%3B E%3D5e-28 AF1423%3B COG1078 HD superfamily phosphohydrolases%3B E%3D0.002 PFAM: PF01966%3B HD domain%3B E%3D3.6e-12 gene gene6112 http://www.ncbi.nlm.nih.gov/gene/?term=RB10985 RB10987 RB10987 RB10987 5954713 5955597 + hypothetical protein best DB hits: BLAST: ddbj:BAB04002.1%3B (AP001508) BH0283~~unknown conserved protein%3B E%3D2e-62 pir:E83199%3B conserved hypothetical protein PA3578 [imported] -%3B E%3D3e-55 pir:A83301%3B hypothetical protein PA2770 [imported] - Pseudomonas%3B E%3D8e-52 COG: BH0283%3B COG0384 Predicted epimerase%2C PhzC/PhzF homolog%3B E%3D2e-63 PFAM: PF02567%3B Phenazine biosynthesis-like pro%3B E%3D1.5e-27 PF01678%3B Diaminopimelate epimerase%3B E%3D0.53 gene gene6113 http://www.ncbi.nlm.nih.gov/gene/?term=RB10987 RB10989 RB10989 RB10989 5955627 5956076 + acetyltransferase PMID: 9835490 best DB hits: BLAST: embl:CAA08848.1%3B (AJ009820) hypothetical protein [Salmonella%3B E%3D2e-16 gb:AAG17708.1%3B AF282595_4 (AF282595) unknown [Klebsiella%3B E%3D2e-16 pir:S74655%3B hypothetical protein sll1671 - Synechocystis sp. (strain%3B E%3D2e-15 COG: sll1671%3B COG0454 Histone acetyltransferase HPA2 and related%3B E%3D2e-16 PFAM: PF00583%3B Acetyltransferase (GNAT) family%3B E%3D3.9e-17 gene gene6114 http://www.ncbi.nlm.nih.gov/gene/?term=RB10989 RB10991 RB10991 RB10991 5956313 5956789 + MarR family transcriptional regulator best DB hits: BLAST: pir:T36405%3B probable marR-family transcriptional regulator -%3B E%3D2e-04 gb:AAG00065.1%3B (U18133) CbaR [Comamonas testosteroni]%3B E%3D8e-04 pir:T29126%3B hypothetical protein SC1F2.17 - Streptomyces coelicolor%3B E%3D0.002 COG: XF0216%3B COG1846 Transcriptional regulators%3B E%3D4e-04 PFAM: PF01047%3B MarR family%3B E%3D2.9e-14 gene gene6115 http://www.ncbi.nlm.nih.gov/gene/?term=RB10991 RB10992 RB10992 RB10992 5956746 5956949 - hypothetical protein gene gene6116 http://www.ncbi.nlm.nih.gov/gene/?term=RB10992 RB10993 RB10993 sigG sigG 5956958 5957677 + RNA-polymerase sigma-E factor best DB hits: BLAST: gb:AAD42769.1%3B AF121849_1 (AF121849) SigG [Synechococcus sp. PCC%3B E%3D9e-12 pir:S77368%3B transcription initiation factor sigma E slr1545 -%3B E%3D1e-11 pir:C82583%3B RNA polymerase sigma-H factor XF2239 [imported] -%3B E%3D1e-08 COG: slr1545%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D1e-12 PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D0.00072 PF00140%3B Sigma-70 factor%3B E%3D0.028 gene gene6117 http://www.ncbi.nlm.nih.gov/gene/?term=RB10993 RB10995 RB10995 RB10995 5957741 5960086 + serine/threonine protein kinase best DB hits: BLAST: pir:T36717%3B probable serinethreonine protein kinase - Streptomyces%3B E%3D8e-35 ddbj:BAB06223.1%3B (AP001515) serinethreonine protein kinase%3B E%3D4e-34 pir:H69878%3B probable protein kinase (EC 2.7.1.-) yloP - Bacillus%3B E%3D9e-34 COG: BH2504_1%3B COG0515 Serine/threonine protein kinases%3B E%3D3e-35 PFAM: PF00069%3B Protein kinase domain%3B E%3D5.1e-31 gene gene6118 http://www.ncbi.nlm.nih.gov/gene/?term=RB10995 RB10996 RB10996 RB10996 5960143 5961429 + UDP-glucose:sterol glucosyltransferase best DB hits: BLAST: gb:AAD39269.1%3B AC007203_1 (AC007203) UDP-glucose:sterol%3B E%3D9e-62 embl:CAB06082.1%3B (Z83833) UDP-glucose:sterol glucosyltransferase%3B E%3D9e-59 gb:AAF27006.1%3B AC016827_17 (AC016827) UDP-glucose:sterol%3B E%3D9e-59 COG: YLR189c_2%3B COG1819 Glycosyl transferases%2C related to%3B E%3D4e-51 gene gene6119 http://www.ncbi.nlm.nih.gov/gene/?term=RB10996 RB10998 RB10998 RB10998 5961422 5961580 + hypothetical protein gene gene6120 http://www.ncbi.nlm.nih.gov/gene/?term=RB10998 RB10999 RB10999 cft cft 5961577 5963355 + cycloinulo-oligosaccharide fructanotransferase PMID: 11157277 best DB hits: BLAST: gb:AAG47946.1%3B AF222787_1 (AF222787) cycloinulo-oligosaccharide%3B E%3D2e-04 pir:T35944%3B probable beta-galactosidase - Streptomyces coelicolor%3B E%3D5e-04 pir:T18266%3B cycloinulo-oligosaccharide fructanotransferase (EC%3B E%3D0.030 PFAM: PF02012%3B BNR repeat%3B E%3D0.23 gene gene6121 http://www.ncbi.nlm.nih.gov/gene/?term=RB10999 RB110 RB110 RB110 47345 49093 - iduronate-2-sulfatase PMID: 8244397 PMID: 8325651 best DB hits: BLAST: gb:AAA16877.1%3B (L13329) iduronate-2-sulfatase [Homo sapiens]%3B E%3D3e-58 gb:AAB33747.1%3B iduronate-2-sulfatase%2C IDS {EC 3.1.6.13} [human%2C%3B E%3D1e-57 gb:AAA37880.1%3B (L07921) iduronate sulfatase [Mus musculus]%3B E%3D1e-54 COG: PA0031%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D2e-36 BS_yqgS%3B COG1368 Phosphoglycerol transferase and related proteins%2C%3B E%3D1e-06 PAB0793%3B COG2194 Predicted membrane-associated%2C metal-dependent%3B E%3D1e-06 PFAM: PF00884%3B Sulfatase%3B E%3D1.7e-28 gene gene61 http://www.ncbi.nlm.nih.gov/gene/?term=RB110 RB1100 RB1100 capC capC 570278 570778 - capsule biosynthesis protein CapC PMID: 2536679 best DB hits: BLAST: gb:AAF13662.1%3B AF188935_60 (AF188935) pXO2-57 [Bacillus anthracis]%3B E%3D2e-05 gb:AAB41842.1%3B (U60883) CapC [Bacillus firmus]%3B E%3D7e-04 pir:G70069%3B poly-gamma-glutamic synthesis pgsC protein - Bacillus%3B E%3D0.002 gene gene580 http://www.ncbi.nlm.nih.gov/gene/?term=RB1100 RB11000 RB11000 RB11000 5963380 5964054 - signal peptide gene gene6122 http://www.ncbi.nlm.nih.gov/gene/?term=RB11000 RB11001 RB11001 RB11001 5964047 5964931 - hypothetical protein gene gene6123 http://www.ncbi.nlm.nih.gov/gene/?term=RB11001 RB11003 RB11003 celP celP 5964938 5966887 - hypothetical protein best DB hits: BLAST: embl:CAB76936.1%3B (AJ275974) cellulosomal protein%3B E%3D6e-11 swissprot:Q45535%3B COTH_BACSU INNER SPORE COAT PROTEIN H -----%3B E%3D0.77 gene gene6124 http://www.ncbi.nlm.nih.gov/gene/?term=RB11003 RB11008 RB11008 RB11008 5967078 5968262 + cycloartenol synthase best DB hits: BLAST: ddbj:BAB10498.1%3B (AB013391) cycloartenol synthase [Arabidopsis%3B E%3D0.18 gene gene6125 http://www.ncbi.nlm.nih.gov/gene/?term=RB11008 RB11009 RB11009 piuB piuB 5969036 5969752 - iron-uptake factor- FMN-dependent oxidoreductase PMID: 8633080 best DB hits: BLAST: gb:AAC06216.1%3B (AF051690) iron-uptake factor [Pseudomonas%3B E%3D5e-17 pir:C83081%3B probable oxidoreductase PA4513 [imported] - Pseudomonas%3B E%3D5e-17 pir:B82329%3B sulfite reductase (NADPH) flavoprotein alpha-component%3B E%3D3e-10 COG: PA4513_2%3B COG0369 Sulfite reductase flavoprotein subunit%3B E%3D7e-17 VC0002%3B COG0716 Flavodoxins%3B E%3D2e-05 PFAM: PF00258%3B Flavodoxin%3B E%3D4.7e-29 gene gene6126 http://www.ncbi.nlm.nih.gov/gene/?term=RB11009 RB11010 RB11010 RB11010 5969749 5970585 - hypothetical protein PMID: 20365717 best DB hits: BLAST: pir:E82786%3B hypothetical protein XF0595 [imported] - Xylella%3B E%3D2e-63 pir:A81079%3B conserved hypothetical protein NMB1475 [imported] -%3B E%3D0.33 pir:A81864%3B probable NMA1686 [imported] - Neisseria meningitidis%3B E%3D0.79 gene gene6127 http://www.ncbi.nlm.nih.gov/gene/?term=RB11010 RB11011 RB11011 RB11011 5970582 5971127 - hypothetical protein PMID: 20365717 best DB hits: BLAST: pir:F82786%3B conserved hypothetical protein XF0596 [imported] -%3B E%3D4e-45 pir:G75353%3B hypothetical protein - Deinococcus radiodurans (strain%3B E%3D3e-08 gene gene6128 http://www.ncbi.nlm.nih.gov/gene/?term=RB11011 RB11013 RB11013 RB11013 5971146 5971802 - hypothetical protein PMID: 20365717 best DB hits: BLAST: pir:G82786%3B conserved hypothetical protein XF0597 [imported] -%3B E%3D2e-46 gb:AAG02156.1%3B AF212041_12 (AF212041) plasmolipin [Zymomonas%3B E%3D1e-20 pir:F75353%3B hypothetical protein - Deinococcus radiodurans (strain%3B E%3D1e-09 COG: XF0597%3B COG3295 Uncharacterized BCR%3B E%3D2e-47 gene gene6129 http://www.ncbi.nlm.nih.gov/gene/?term=RB11013 RB11015 RB11015 RB11015 5971828 5972916 - signal peptide best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene6130 http://www.ncbi.nlm.nih.gov/gene/?term=RB11015 RB11016 RB11016 RB11016 5973102 5974211 - signal peptide best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene6131 http://www.ncbi.nlm.nih.gov/gene/?term=RB11016 RB11019 RB11019 RB11019 5974141 5974374 - hypothetical protein gene gene6132 http://www.ncbi.nlm.nih.gov/gene/?term=RB11019 RB11021 RB11021 RB11021 5974498 5975385 - ABC transport system ATP binding protein PMID: 8843436 best DB hits: BLAST: embl:CAC10293.1%3B (AL442629) ABC transport system ATP%3B E%3D3e-49 embl:CAB81857.1%3B (AL161691) ABC-transporter ATP-binding%3B E%3D6e-48 embl:CAB89461.1%3B (AL354048) ABC transporter ATP-binding%3B E%3D5e-47 COG: AF1469%3B COG1136 ABC-type (unclassified) transport system%2C ATPase%3B E%3D3e-47 PFAM: PF00485%3B Phosphoribulokinase / Uridine%3B E%3D0.21 PF00005%3B ABC transporter%3B E%3D2.1e-56 gene gene6133 http://www.ncbi.nlm.nih.gov/gene/?term=RB11021 RB11023 RB11023 RB11023 5975424 5975603 - hypothetical protein gene gene6134 http://www.ncbi.nlm.nih.gov/gene/?term=RB11023 RB11024 RB11024 fes fes 5975602 5977248 + enterochelin esterase PMID: 11694506 best DB hits: BLAST: pir:B83340%3B hypothetical protein PA2451 [imported] - Pseudomonas%3B E%3D2e-32 swissprot:O51900%3B FES_ERWCH ENTEROCHELIN ESTERASE (FERRIC%3B E%3D6e-20 gb:AAC46181.1%3B (U97227) ferric enterochelin esterase homolog%3B E%3D2e-18 COG: PA2451%3B COG2382 Enterochelin esterase and related enzymes%3B E%3D2e-33 gene gene6135 http://www.ncbi.nlm.nih.gov/gene/?term=RB11024 RB11027 RB11027 RB11027 5977270 5980077 - ABC transporter PMID: 8843436 best DB hits: BLAST: embl:CAC09551.1%3B (AL442120) ABC transport system%3B E%3D1e-06 pir:G70821%3B hypothetical protein Rv0987 - Mycobacterium tuberculosis%3B E%3D0.005 ddbj:BAB06840.1%3B (AP001517) BH3121~~unknown conserved protein%3B E%3D0.011 COG: Rv0987_1%3B COG0577 Predicted permease%3B E%3D8e-04 PFAM: PF02687%3B Predicted permease%3B E%3D3.3e-13 gene gene6136 http://www.ncbi.nlm.nih.gov/gene/?term=RB11027 RB1103 RB1103 capB capB 570780 572105 - capsule biosynthesis protein CapB PMID: 2536679 best DB hits: BLAST: swissprot:P19580%3B CAPB_BACAN CAPB PROTEIN ----- pir: A30091%3B E%3D7e-53 gb:AAF13663.1%3B AF188935_61 (AF188935) pXO2-58 [Bacillus anthracis]%3B E%3D7e-53 pir:F70069%3B poly-gamma-glutamic synthesis pgsB protein - Bacillus%3B E%3D4e-50 gene gene581 http://www.ncbi.nlm.nih.gov/gene/?term=RB1103 RB11030 RB11030 RB11030 5980074 5980829 - ABC transporter ATP-binding protein PMID: 9389475 best DB hits: BLAST: gb:AAB89781.1%3B (AE001001) ABC transporter ATP-binding protein%3B E%3D2e-46 embl:CAB89461.1%3B (AL354048) ABC transporter ATP-binding%3B E%3D2e-45 embl:CAC10293.1%3B (AL442629) ABC transport system ATP%3B E%3D3e-45 COG: AF1469%3B COG1136 ABC-type (unclassified) transport system%2C ATPase%3B E%3D2e-47 PFAM: PF01580%3B FtsK/SpoIIIE family%3B E%3D0.7 PF00485%3B Phosphoribulokinase / Uridine ki%3B E%3D0.21 PF00005%3B ABC transporter%3B E%3D7.9e-61 gene gene6137 http://www.ncbi.nlm.nih.gov/gene/?term=RB11030 RB11031 RB11031 RB11031 5980865 5981053 + hypothetical protein gene gene6138 http://www.ncbi.nlm.nih.gov/gene/?term=RB11031 RB11033 RB11033 RB11033 5981108 5984020 + ABC transporter integral membrane protein PMID: 8843436 best DB hits: BLAST: embl:CAB89462.1%3B (AL354048) ABC transporter integral%3B E%3D2e-16 embl:CAC09551.1%3B (AL442120) ABC transport system%3B E%3D2e-11 embl:CAB62838.1%3B (AL133443) hypothetical protein L5529.07%3B E%3D3e-04 COG: AF1017%3B COG0577 Predicted permease%3B E%3D3e-05 PFAM: PF02687%3B Predicted permease%3B E%3D2.3e-12 gene gene6139 http://www.ncbi.nlm.nih.gov/gene/?term=RB11033 RB11036 RB11036 ntrC ntrC 5984197 5985609 - nitrogen regulation protein NR(I) PMID: 7602583 PMID: 7827089 PMID: 10512705 PMID: 10622255 best DB hits: BLAST: pir:E83006%3B two-component response regulator NtrC PA5125 [imported]%3B E%3D9e-89 swissprot:P41789%3B NTRC_SALTY NITROGEN REGULATION PROTEIN NR(I)%3B E%3D1e-85 gb:AAG59057.1%3B AE005617_6 (AE005617) response regulator for gln%3B E%3D2e-85 COG: PA5125%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D8e-90 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D1e-31 PF00158%3B Sigma-54 interaction domain%3B E%3D2.1e-114 gene gene6140 http://www.ncbi.nlm.nih.gov/gene/?term=RB11036 RB11037 RB11037 ntrB ntrB 5985617 5987098 - nitrogen regulation protein ntrB PMID: 7553451 best DB hits: BLAST: pir:A82630%3B two-component system%2C sensor protein XF1849 [imported] -%3B E%3D1e-11 pir:S35265%3B ntrB protein - Azospirillum brasilense ----- embl:%3B E%3D1e-11 swissprot:P45670%3B NTRB_AZOBR NITROGEN REGULATION PROTEIN NTRB%3B E%3D3e-11 COG: XF1849%3B COG0642 Sensory transduction histidine kinases%3B E%3D1e-12 PFAM: PF00672%3B HAMP domain%3B E%3D9.9e-11 PF00512%3B His Kinase A (phosphoacceptor) doma%3B E%3D0.00015 PF02518%3B Histidine kinase-%2C DNA gyrase B-%2C p%3B E%3D4.8e-20 gene gene6141 http://www.ncbi.nlm.nih.gov/gene/?term=RB11037 RB1104 RB1104 RB1104 572078 572257 + hypothetical protein gene gene582 http://www.ncbi.nlm.nih.gov/gene/?term=RB1104 RB11041 RB11041 RB11041 5987234 5988283 + signal peptide best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene6142 http://www.ncbi.nlm.nih.gov/gene/?term=RB11041 RB11043 RB11043 RB11043 5988389 5989402 + hypothetical protein PMID: 9734815 best DB hits: BLAST: ddbj:BAB09005.1%3B (AB012239) gene_id:K11J9.14~~unknown protein%3B E%3D0.63 PFAM: PF00036%3B EF hand%3B E%3D0.00096 gene gene6143 http://www.ncbi.nlm.nih.gov/gene/?term=RB11043 RB11047 RB11047 RB11047 5989573 5990562 - hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:G83341%3B hypothetical protein PA2428 [imported] - Pseudomonas%3B E%3D1e-102 gb:AAB09718.1%3B (U12891) ORF1 [Pseudomonas aeruginosa]%3B E%3D1e-101 pir:B82287%3B conserved hypothetical protein VC0728 [imported] -%3B E%3D2e-81 COG: PA2428%3B COG2326 Uncharacterized BCR%3B E%3D1e-103 gene gene6144 http://www.ncbi.nlm.nih.gov/gene/?term=RB11047 RB11049 RB11049 RB11049 5990489 5990713 - hypothetical protein gene gene6145 http://www.ncbi.nlm.nih.gov/gene/?term=RB11049 RB1105 RB1105 RB1105 572251 572367 + hypothetical protein gene gene583 http://www.ncbi.nlm.nih.gov/gene/?term=RB1105 RB11050 RB11050 nptA nptA 5990726 5991910 - nptA protein PMID: 7478940 best DB hits: BLAST: pir:D82295%3B nptA protein VC0676 [imported] - Vibrio cholerae (group%3B E%3D9e-73 gb:AAC42026.1%3B (L33878) renal cortical Na+Pi co-transporter [Mus%3B E%3D1e-18 gb:AAC52361.1%3B (U22465) NaPi-cotransporter [Mus musculus]%3B E%3D1e-18 COG: VC0676%3B COG1283 Na+/phosphate symporter%3B E%3D9e-74 PFAM: PF02659%3B Domain of unknown function DUF%3B E%3D0.051 PF02690%3B Na+/Pi-cotransporter%3B E%3D2.8e-96 gene gene6146 http://www.ncbi.nlm.nih.gov/gene/?term=RB11050 RB11052 RB11052 RB11052 5991855 5992130 - hypothetical protein PMID: 9634230 best DB hits: BLAST: pir:E70933%3B hypothetical protein Rv0574c - Mycobacterium%3B E%3D0.88 gene gene6147 http://www.ncbi.nlm.nih.gov/gene/?term=RB11052 RB11055 RB11055 RB11055 5992248 5994449 - hypothetical protein PMID: 10470850 best DB hits: BLAST: ddbj:BAB09588.1%3B (AB018118) gene_id:MRI1.6~~pir D64592~~similar to%3B E%3D7e-09 pir:G83627%3B probable nucleoside hydrolase PA0143 [imported] -%3B E%3D0.010 COG: PA0143%3B COG1957 Inosine-uridine nucleoside N-ribohydrolase%3B E%3D0.001 PFAM: PF01156%3B Inosine-uridine preferring nucle%3B E%3D0.022 PF02012%3B BNR repeat%3B E%3D0.32 gene gene6148 http://www.ncbi.nlm.nih.gov/gene/?term=RB11055 RB1106 RB1106 RB1106 572472 572615 + hypothetical protein gene gene584 http://www.ncbi.nlm.nih.gov/gene/?term=RB1106 RB11060 RB11060 RB11060 5994448 5994648 + hypothetical protein gene gene6149 http://www.ncbi.nlm.nih.gov/gene/?term=RB11060 RB11062 RB11062 RB11062 5994714 5995358 - hypothetical protein gene gene6150 http://www.ncbi.nlm.nih.gov/gene/?term=RB11062 RB11063 RB11063 sul1 sul1 5995455 5997761 - sulfate transporter PMID: 10984043 best DB hits: BLAST: pir:B70979%3B hypothetical protein Rv3273 - Mycobacterium tuberculosis%3B E%3D2e-36 pir:D83631%3B probable sulfate transporter PA0103 [imported] -%3B E%3D3e-31 ddbj:BAB20551.1%3B (AB040415) Mig5 [Salmonella enterica serovar%3B E%3D9e-24 COG: PA0103%3B COG0659 Sulfate permease and related transporters (MFS%3B E%3D2e-32 DR2238%3B COG0288 Carbonic anhydrase%3B E%3D2e-24 slr0096%3B COG0659 Sulfate permease and related transporters (MFS%3B E%3D4e-15 PFAM: PF00916%3B Sulfate transporter family%3B E%3D1.5e-39 PF00484%3B Carbonic anhydrase%3B E%3D5.9e-12 PF02878%3B Phosphoglucomutase/phosphomann%3B E%3D0.17 gene gene6151 http://www.ncbi.nlm.nih.gov/gene/?term=RB11063 RB11065 RB11065 RB11065 5997794 5998018 + hypothetical protein gene gene6152 http://www.ncbi.nlm.nih.gov/gene/?term=RB11065 RB11067 RB11067 RB11067 5998015 5998308 - signal peptide gene gene6153 http://www.ncbi.nlm.nih.gov/gene/?term=RB11067 RB11069 RB11069 nhaP nhaP 5998517 6000286 - potassium/proton antiporter the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter%3B can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli gene gene6154 http://www.ncbi.nlm.nih.gov/gene/?term=RB11069 RB1107 RB1107 RB1107 572592 572894 - hypothetical protein gene gene585 http://www.ncbi.nlm.nih.gov/gene/?term=RB1107 RB11070 RB11070 RB11070 6000321 6000479 + hypothetical protein gene gene6155 http://www.ncbi.nlm.nih.gov/gene/?term=RB11070 RB11072 RB11072 acrB acrB 6000550 6003768 - acriflavine resistance protein B PMID: 8905231 PMID: 8407802 PMID: 7651136 best DB hits: BLAST: pir:F83335%3B RND multidrug efflux transporter MexF PA2494 [imported] -%3B E%3D0.0 pir:T30830%3B hypothetical protein mexF - Pseudomonas aeruginosa -----%3B E%3D0.0 pir:D83206%3B probable RND efflux transporter PA3522 [imported] -%3B E%3D0.0 COG: PA2494%3B COG0841 Cation/multidrug efflux pump%3B E%3D0.0 PFAM: PF00873%3B AcrB/AcrD/AcrF family%3B E%3D0 gene gene6156 http://www.ncbi.nlm.nih.gov/gene/?term=RB11072 RB11073 RB11073 acrA acrA 6003705 6005108 - acriflavin resistance protein A PMID: 10984043 best DB hits: BLAST: pir:E83335%3B RND multidrug efflux membrane fusion protein MexE%3B E%3D1e-54 pir:T30829%3B hypothetical protein mexE - Pseudomonas aeruginosa%3B E%3D1e-52 pir:E83206%3B probable RND efflux membrane fusion protein precursor%3B E%3D2e-42 COG: PA2493%3B COG0845 Membrane-fusion protein%3B E%3D1e-55 PFAM: PF00364%3B Biotin-requiring enzyme%3B E%3D0.0006 PF00529%3B HlyD family secretion protein%3B E%3D4e-20 gene gene6157 http://www.ncbi.nlm.nih.gov/gene/?term=RB11073 RB11075 RB11075 marR marR 6005224 6005727 - MarR family transcriptional regulator PMID: 11473263 PMID: 9068629 best DB hits: BLAST: pir:A82692%3B transcriptional regulator MarR family XF1354 [imported] -%3B E%3D1e-04 embl:CAB95985.1%3B (AL360034) MarR-family regulatory%3B E%3D2e-04 gb:AAB87745.1%3B (U89914) hypothetical 16.1 kDa transcriptional%3B E%3D2e-04 COG: XF1354%3B COG1846 Transcriptional regulators%3B E%3D1e-05 PFAM: PF01047%3B MarR family%3B E%3D9.8e-17 gene gene6158 http://www.ncbi.nlm.nih.gov/gene/?term=RB11075 RB11077 RB11077 RB11077 6005904 6006371 - hypothetical protein PMID: 10761919 best DB hits: BLAST: pir:D81775%3B conserved hypothetical protein NMA2048 [imported] -%3B E%3D3e-17 pir:F81198%3B conserved hypothetical protein NMB0437 [imported] -%3B E%3D4e-17 gb:AAC61685.1%3B (AF052517) CDG1D [Acetobacter xylinus]%3B E%3D1e-15 COG: NMB0437%3B COG1959 Predicted transcriptional regulator%3B E%3D4e-18 PFAM: PF02082%3B Uncharacterized protein family UPF00%3B E%3D1.3e-33 gene gene6159 http://www.ncbi.nlm.nih.gov/gene/?term=RB11077 RB11079 RB11079 RB11079 6006388 6006543 + hypothetical protein gene gene6160 http://www.ncbi.nlm.nih.gov/gene/?term=RB11079 RB11080 RB11080 RB11080 6006413 6006592 + hypothetical protein gene gene6161 http://www.ncbi.nlm.nih.gov/gene/?term=RB11080 RB11081 RB11081 RB11081 6006629 6007093 + hypothetical protein gene gene6162 http://www.ncbi.nlm.nih.gov/gene/?term=RB11081 RB11082 RB11082 RB11082 6007033 6007371 - hypothetical protein gene gene6163 http://www.ncbi.nlm.nih.gov/gene/?term=RB11082 RB11084 RB11084 RB11084 6007384 6010278 + response regulator aspartate phosphatase rapC PMID: 9384377 best DB hits: BLAST: pir:F69688%3B response regulator aspartate phosphatase rapC - Bacillus%3B E%3D0.79 gene gene6164 http://www.ncbi.nlm.nih.gov/gene/?term=RB11084 RB11088 RB11088 RB11088 6010268 6012115 + hypothetical protein best DB hits: BLAST: ddbj:BAA91540.1%3B (AK001182) unnamed protein product [Homo%3B E%3D0.027 embl:CAB98267.1%3B (AJ276171) ASPIC [Homo sapiens]%3B E%3D0.027 embl:CAB98268.1%3B (AJ276171) ASPIC [Homo sapiens] ----- embl:%3B E%3D0.027 gene gene6165 http://www.ncbi.nlm.nih.gov/gene/?term=RB11088 RB1109 RB1109 RB1109 573002 573817 - hypothetical protein PMID: 8843436 best DB hits: BLAST: embl:CAB58265.1%3B (AL121849) multi-domain protein%3B E%3D2e-24 embl:CAB45032.1%3B (AL078635) large multi-functional%3B E%3D3e-24 pir:T36423%3B probable large%2C multifunctional secreted protein -%3B E%3D0.003 gene gene586 http://www.ncbi.nlm.nih.gov/gene/?term=RB1109 RB11090 RB11090 cyaA cyaA 6012230 6013378 - adenylate cyclase PMID: 10952301 best DB hits: BLAST: pir:T17197%3B adenylate cyclase homolog - Spirulina platensis -----%3B E%3D5e-17 pir:G82244%3B response regulator VC1087 [imported] - Vibrio cholerae%3B E%3D1e-15 ddbj:BAA14000.1%3B (D89625) adenylate cyclase [Anabaena sp.]%3B E%3D6e-14 COG: VC1087_1%3B COG0784 CheY-like receiver domains%3B E%3D2e-16 PA2881%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D2e-12 VC1086_1%3B COG0784 CheY-like receiver domains%3B E%3D4e-11 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D8e-19 gene gene6166 http://www.ncbi.nlm.nih.gov/gene/?term=RB11090 RB11091 RB11091 RB11091 6013416 6015725 - two-component sensor PMID: 9045826 PMID: 10564511 best DB hits: BLAST: pir:F83324%3B probable two-component sensor PA2571 [imported] -%3B E%3D5e-36 pir:D82244%3B sensory box sensor histidine kinase VC1084 [imported] -%3B E%3D1e-35 pir:C82425%3B sensor histide kinase VCA0719 [imported] - Vibrio%3B E%3D2e-34 COG: PA2571%3B COG0642 Sensory transduction histidine kinases%3B E%3D5e-37 PFAM: PF00989%3B PAS domain%3B E%3D1.1e-06 PF00512%3B His Kinase A (phosphoacceptor) doma%3B E%3D0.001 PF02518%3B Histidine kinase-%2C DNA gyrase B-%2C p%3B E%3D2.9e-30 gene gene6167 http://www.ncbi.nlm.nih.gov/gene/?term=RB11091 RB11095 RB11095 RB11095 6015744 6016727 - hypothetical protein gene gene6168 http://www.ncbi.nlm.nih.gov/gene/?term=RB11095 RB11099 RB11099 RB11099 6016757 6017959 + hypothetical protein PMID: 20365717 best DB hits: BLAST: pir:A82699%3B conserved hypothetical protein XF1304 [imported] -%3B E%3D4e-20 pir:T39090%3B probable integral membrane protein - fission yeast%3B E%3D1e-09 embl:CAB62252.1%3B (Y18559) hypothetical protein [Pichia farinosa]%3B E%3D2e-08 COG: XF1304%3B COG3163 Uncharacterized ACR%3B E%3D4e-21 BH0081%3B COG2966 Uncharacterized BCR%3B E%3D1e-06 MTH749%3B COG3163 Uncharacterized ACR%3B E%3D2e-04 gene gene6169 http://www.ncbi.nlm.nih.gov/gene/?term=RB11099 RB11100 RB11100 RB11100 6017989 6018402 - manganese transport regulator MntR Transcriptional regulator that represses the manganese transporter MntH when manganese is present gene gene6170 http://www.ncbi.nlm.nih.gov/gene/?term=RB11100 RB11101 RB11101 RB11101 6018615 6019805 + signal peptide best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene6171 http://www.ncbi.nlm.nih.gov/gene/?term=RB11101 RB11104 RB11104 RB11104 6019790 6020155 + hypothetical protein gene gene6172 http://www.ncbi.nlm.nih.gov/gene/?term=RB11104 RB11105 RB11105 RB11105 6020182 6021042 - hypothetical protein best DB hits: BLAST: pir:T37061%3B probable secreted protein - Streptomyces coelicolor%3B E%3D8e-19 pir:T35483%3B hypothetical protein SC6C5.12c SC6C5.12c - Streptomyces%3B E%3D2e-15 ddbj:BAB15080.1%3B (AK025164) unnamed protein product [Homo%3B E%3D7e-12 COG: VC2238%3B COG3021 Uncharacterized BCR%3B E%3D0.001 PFAM: PF01260%3B AP endonuclease 1%3B E%3D0.8 gene gene6173 http://www.ncbi.nlm.nih.gov/gene/?term=RB11105 RB11107 RB11107 RB11107 6021425 6022102 + hypothetical protein PMID: 8905231 best DB hits: BLAST: pir:S77018%3B hypothetical protein sll0788 - Synechocystis sp. (strain%3B E%3D0.12 gene gene6174 http://www.ncbi.nlm.nih.gov/gene/?term=RB11107 RB11109 RB11109 RB11109 6022268 6022597 - hypothetical protein gene gene6175 http://www.ncbi.nlm.nih.gov/gene/?term=RB11109 RB11110 RB11110 RB11110 6022600 6023529 + transposase PMID: 11759840 best DB hits: BLAST: embl:CAB93418.1%3B (AL357524) transposase [Streptomyces%3B E%3D0.60 gene gene6176 http://www.ncbi.nlm.nih.gov/gene/?term=RB11110 RB11112 RB11112 csaA csaA 6023806 6024144 - CsaA protein PMID: 10984043 best DB hits: BLAST: pir:A83243%3B CsaA protein PA3221 [imported] - Pseudomonas aeruginosa%3B E%3D9e-25 ddbj:BAB05504.1%3B (AP001513) chaperonin involved in protein%3B E%3D2e-23 swissprot:P37584%3B CSAA_BACSU CSAA PROTEIN ----- pir: E69607%3B E%3D7e-23 COG: PA3221%3B COG0073 EMAP domain%3B E%3D9e-26 PFAM: PF01588%3B tRNA binding domain%3B E%3D4.9e-17 gene gene6177 http://www.ncbi.nlm.nih.gov/gene/?term=RB11112 RB11114 RB11114 RB11114 6024283 6024474 + hypothetical protein gene gene6178 http://www.ncbi.nlm.nih.gov/gene/?term=RB11114 RB11115 RB11115 RB11115 6024483 6024632 - hypothetical protein gene gene6179 http://www.ncbi.nlm.nih.gov/gene/?term=RB11115 RB11116 RB11116 aslA aslA 6024657 6026306 + arylsulfatase PMID: 7744061 best DB hits: BLAST: pir:S69336%3B arylsulfatase (EC 3.1.6.1) - Pseudomonas aeruginosa%3B E%3D8e-74 swissprot:P51691%3B ARS_PSEAE ARYLSULFATASE (ARYL-SULFATE%3B E%3D5e-73 gb:AAF71377.1%3B AF262990_2 (AF262990) arylsulfatase [Klebsiella%3B E%3D3e-65 COG: PA0183%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D5e-74 PFAM: PF00884%3B Sulfatase%3B E%3D2.3e-45 PF00505%3B HMG (high mobility group) box%3B E%3D0.84 PF00884%3B Sulfatase%3B E%3D5.5e-54 gene gene6180 http://www.ncbi.nlm.nih.gov/gene/?term=RB11116 RB11118 RB11118 RB11118 6026407 6027564 - chloromuconate cycloisomerase YkfB1 PMID: 11016950 best DB hits: BLAST: gb:AAG20045.1%3B (AE005084) chloromuconate cycloisomerase%3B YkfB1%3B E%3D8e-48 gb:AAF28135.1%3B AF153317_32 (AF153317) YcjG [Shigella dysenteriae]%3B E%3D6e-28 swissprot:P51981%3B YCJG_ECOLI HYPOTHETICAL 34.7 KD PROTEIN IN%3B E%3D1e-27 COG: VNG1837G%3B COG1441 O-succinylbenzoate synthase and related enzymes%3B E%3D8e-49 PFAM: PF02746%3B Mandelate racemase / muconate%3B E%3D1.3e-09 PF01188%3B Mandelate racemase / muconate%3B E%3D4.9e-21 gene gene6181 http://www.ncbi.nlm.nih.gov/gene/?term=RB11118 RB11119 RB11119 RB11119 6027561 6028775 - pipeptidyl-peptidase VI PMID: 1587462 PMID: 1551459 best DB hits: BLAST: swissprot:P39043%3B DPP6_BACSH DIPEPTIDYL-PEPTIDASE VI (DPP VI)%3B E%3D2e-19 pir:A69856%3B polysugar degrading enzyme homolog ykfC - Bacillus%3B E%3D6e-14 ddbj:BAB06726.1%3B (AP001517) polysugar degrading enzyme%3B E%3D7e-14 COG: BS_ykfC%3B COG0791 Cell wall-associated hydrolases%3B E%3D6e-15 BH3007%3B COG0791 Cell wall-associated hydrolases (invasion-associated%3B E%3D6e-15 DR1325_2%3B COG0791 Cell wall-associated hydrolases%3B E%3D2e-12 PFAM: PF00877%3B NLP/P60 family%3B E%3D4.2e-24 gene gene6182 http://www.ncbi.nlm.nih.gov/gene/?term=RB11119 RB11121 RB11121 RB11121 6028836 6029543 + hypothetical protein gene gene6183 http://www.ncbi.nlm.nih.gov/gene/?term=RB11121 RB11122 RB11122 RB11122 6029516 6029755 - hypothetical protein gene gene6184 http://www.ncbi.nlm.nih.gov/gene/?term=RB11122 RB11123 RB11123 aslA aslA 6029771 6031246 - N-acetylgalactosamine 6-sulfate sulfatase (GALNS) PMID: 8020961 best DB hits: BLAST: ddbj:BAA04535.1%3B (D17629) N-acetylgalactosamine 6-sulfate%3B E%3D3e-31 pir:S07089%3B arylsulfatase (EC 3.1.6.1) - sea urchin (Lytechinus%3B E%3D9e-29 swissprot:P14000%3B ARS_HEMPU ARYLSULFATASE PRECURSOR (ARYL-SULFATE%3B E%3D9e-29 COG: PA0183%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D2e-27 PFAM: PF00884%3B Sulfatase%3B E%3D1.6e-44 gene gene6185 http://www.ncbi.nlm.nih.gov/gene/?term=RB11123 RB11127 RB11127 ids ids 6031401 6033116 - iduronate-2-sulfatase PMID: 8325651 best DB hits: BLAST: gb:AAA37880.1%3B (L07921) iduronate sulfatase [Mus musculus]%3B E%3D1e-55 gb:AAA16877.1%3B (L13329) iduronate-2-sulfatase [Homo sapiens]%3B E%3D5e-53 gb:AAB33747.1%3B iduronate-2-sulfatase%2C IDS {EC 3.1.6.13} [human%2C%3B E%3D2e-52 COG: PA0031%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D8e-36 BS_yfnI%3B COG1368 Phosphoglycerol transferase and related proteins%2C%3B E%3D4e-05 VC2600%3B COG3083 Predicted hydrolase of alkaline phosphatase%3B E%3D5e-05 PFAM: PF00884%3B Sulfatase%3B E%3D8.7e-22 gene gene6186 http://www.ncbi.nlm.nih.gov/gene/?term=RB11127 RB11130 RB11130 RB11130 6033077 6033415 + hypothetical protein gene gene6187 http://www.ncbi.nlm.nih.gov/gene/?term=RB11130 RB11131 RB11131 RB11131 6033307 6035646 + peroxinectin precursor PMID: 7488183 best DB hits: BLAST: pir:JC4397%3B peroxinectin precursor - signal crayfish ----- embl:%3B E%3D2e-65 gb:AAC94959.1%3B (U68724) polysomal ribonuclease 1 [Xenopus laevis]%3B E%3D5e-65 embl:CAA43114.1%3B (X60703) peroxidase [Mus musculus]%3B E%3D8e-65 PFAM: PF00404%3B Dockerin type I repeat%3B E%3D0.11 PF00141%3B Peroxidase%3B E%3D7.8e-06 gene gene6188 http://www.ncbi.nlm.nih.gov/gene/?term=RB11131 RB11132 RB11132 RB11132 6035845 6036210 - hypothetical protein gene gene6189 http://www.ncbi.nlm.nih.gov/gene/?term=RB11132 RB11133 RB11133 RB11133 6036170 6038077 + matrix metalloproteinase 1 PMID: 10964925 PMID: 7657606 best DB hits: BLAST: gb:AAF47255.1%3B (AE003464) CG4859 gene product [Drosophila%3B E%3D3e-18 gb:AAG33131.1%3B AF271666_1 (AF271666) matrix metalloproteinase 1%3B E%3D3e-18 embl:CAA78248.1%3B (Z12604) stromelysin-3 [Mus musculus]%3B E%3D8e-16 PFAM: PF00404%3B Dockerin type I repeat%3B E%3D0.0079 gene gene6190 http://www.ncbi.nlm.nih.gov/gene/?term=RB11133 RB11135 RB11135 rpoE rpoE 6038191 6038868 + RNA polymerase sigma-E factor PMID: 11248100 PMID: 7768826 PMID: 7889934 best DB hits: BLAST: gb:AAK03873.1%3B (AE006215) RpoE [Pasteurella multocida]%3B E%3D7e-07 swissprot:P44790%3B RPOE_HAEIN RNA POLYMERASE SIGMA-E FACTOR%3B E%3D2e-06 pir:H82073%3B RNA polymerase sigma-E factor VC2467 [imported] - Vibrio%3B E%3D5e-06 COG: HI0628%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D2e-07 PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D0.4 gene gene6191 http://www.ncbi.nlm.nih.gov/gene/?term=RB11135 RB11136 RB11136 RB11136 6038799 6041537 + serine/threonine protein kinase PMID: 1835671 best DB hits: BLAST: pir:T36717%3B probable serinethreonine protein kinase - Streptomyces%3B E%3D1e-31 embl:CAA10713.1%3B (AJ132604) hypothetical protein [Lactococcus%3B E%3D1e-31 pir:H69878%3B probable protein kinase (EC 2.7.1.-) yloP - Bacillus%3B E%3D3e-31 COG: BS_yloP_1%3B COG0515 Serine/threonine protein kinases%3B E%3D3e-32 PFAM: PF00069%3B Protein kinase domain%3B E%3D9.9e-29 PF00515%3B TPR Domain%3B E%3D0.0026 gene gene6192 http://www.ncbi.nlm.nih.gov/gene/?term=RB11136 RB11137 RB11137 RB11137 6041524 6042972 + hypothetical protein gene gene6193 http://www.ncbi.nlm.nih.gov/gene/?term=RB11137 RB11142 RB11142 RB11142 6043192 6044637 + signal peptide best DB hits: PFAM: PF01011%3B PQQ enzyme repeat%3B E%3D0.34 gene gene6194 http://www.ncbi.nlm.nih.gov/gene/?term=RB11142 RB11145 RB11145 RB11145 6044594 6044779 - hypothetical protein gene gene6195 http://www.ncbi.nlm.nih.gov/gene/?term=RB11145 RB11146 RB11146 RB11146 6044754 6045629 + hydrolase PMID: 97000351 PMID: 2380986 best DB hits: BLAST: embl:CAB92202.1%3B (AL356592) hydrolase. [Streptomyces%3B E%3D2e-33 pir:D70881%3B hypothetical protein Rv2765 - Mycobacterium tuberculosis%3B E%3D3e-29 embl:CAC04055.1%3B (AL391406) hydrolase (dienelactone%3B E%3D9e-23 COG: Rv2765%3B COG0412 Dienelactone hydrolase and related enzymes%3B E%3D3e-30 PFAM: PF02277%3B Phosphoribosyltransferase%3B E%3D0.45 PF00561%3B alpha/beta hydrolase fold%3B E%3D0.6 PF01738%3B Dienelactone hydrolase%3B E%3D2e-34 gene gene6196 http://www.ncbi.nlm.nih.gov/gene/?term=RB11146 RB11147 RB11147 arsC arsC 6045769 6046419 + arsenate reductase PMID: 10567266 PMID: 9537360 PMID: 8003493 best DB hits: BLAST: pir:F75607%3B arsenate reductase - Deinococcus radiodurans (strain R1)%3B E%3D1e-04 swissprot:P45947%3B ARSC_BACSU ARSENATE REDUCTASE (ARSENICAL PUMP%3B E%3D0.001 pir:B70360%3B arsenate reductase - Aquifex aeolicus ----- gb:%3B E%3D0.014 COG: DRA0123%3B COG0394 Protein-tyrosine-phosphatase%3B E%3D1e-05 gene gene6197 http://www.ncbi.nlm.nih.gov/gene/?term=RB11147 RB11149 RB11149 RB11149 6046601 6046921 - hypothetical protein gene gene6198 http://www.ncbi.nlm.nih.gov/gene/?term=RB11149 RB11150 RB11150 RB11150 6046862 6048019 + xenobiotic reductase B PMID: 10515912 best DB hits: BLAST: pir:D83102%3B xenobiotic reductase PA4356 [imported] - Pseudomonas%3B E%3D5e-92 ddbj:BAA88211.1%3B (AB025798) NAD(P)H-dependent 2-cyclohexen-1-one%3B E%3D1e-91 gb:AAF02539.1%3B AF154062_1 (AF154062) xenobiotic reductase B%3B E%3D1e-87 COG: PA4356%3B COG1902 NADH:flavin oxidoreductases%2C Old Yellow Enzyme%3B E%3D4e-93 nemA%3B COG1902 NADH:flavin oxidoreductases%2C Old Yellow Enzyme family%3B E%3D2e-73 PA2932%3B COG1902 NADH:flavin oxidoreductases%2C Old Yellow Enzyme%3B E%3D3e-70 PFAM: PF00724%3B NADH:flavin oxidoreductase / NAD%3B E%3D5.6e-98 gene gene6199 http://www.ncbi.nlm.nih.gov/gene/?term=RB11150 RB11151 RB11151 yjgB yjgB 6048095 6049105 + zinc-type alcohol dehydrogenase PMID: 87304248 PMID: 92277668 best DB hits: BLAST: pir:S76928%3B probable aryl alcohol dehydrogenase (EC 1.1.1.-) -%3B E%3D1e-94 pir:S56495%3B probable aryl alcohol dehydrogenase (EC 1.1.1.-) yjgB -%3B E%3D6e-71 swissprot:P27250%3B YJGB_ECOLI HYPOTHETICAL ZINC-TYPE ALCOHOL%3B E%3D6e-71 COG: slr1192%3B COG1064 Zn-dependent alcohol dehydrogenases%3B E%3D9e-96 PFAM: PF00899%3B ThiF family%3B E%3D0.48 PF02826%3B D-isomer specific 2-hydroxyacid%3B E%3D0.48 PF00107%3B Zinc-binding dehydrogenases%3B E%3D5.9e-85 gene gene6200 http://www.ncbi.nlm.nih.gov/gene/?term=RB11151 RB11152 RB11152 czcA czcA 6049159 6052266 - multidrug resistance protein PMID: 2678100 best DB hits: BLAST: pir:H82300%3B probable multidrug resistance protein VC0629 [imported] -%3B E%3D3e-51 pir:S76433%3B cation efflux system protein czcA-2 - Synechocystis sp.%3B E%3D4e-42 pir:G64595%3B acriflavine resistance protein - Helicobacter pylori%3B E%3D4e-41 COG: VC0629%3B COG0841 Cation/multidrug efflux pump%3B E%3D3e-52 PFAM: PF00873%3B AcrB/AcrD/AcrF family%3B E%3D1e-43 gene gene6201 http://www.ncbi.nlm.nih.gov/gene/?term=RB11152 RB11154 RB11154 RB11154 6052263 6053573 - RND efflux membrane fusion protein precursor PMID: 10984043 best DB hits: BLAST: pir:A83330%3B probable RND efflux membrane fusion protein precursor%3B E%3D2e-06 gb:AAG57137.1%3B AE005434_1 (AE005434) membrane protein%3B E%3D2e-06 ddbj:BAA15928.1%3B (D90845) Membrane fusion protein MtrC precursor.%3B E%3D4e-06 COG: PA2528%3B COG0845 Membrane-fusion protein%3B E%3D2e-07 PA3892%3B COG1566 Multidrug resistance efflux pump%3B E%3D1e-05 VC0628%3B COG0845 Membrane-fusion protein%3B E%3D4e-05 PFAM: PF00529%3B HlyD family secretion protein%3B E%3D4.2e-07 gene gene6202 http://www.ncbi.nlm.nih.gov/gene/?term=RB11154 RB11155 RB11155 ibeB ibeB 6053518 6055002 - hypothetical protein PMID: 10225861 best DB hits: BLAST: pir:A83347%3B probable outer membrane protein PA2391 [imported] -%3B E%3D1e-24 pir:F83329%3B probable outer membrane lipoprotein precursor PA2525%3B E%3D2e-23 gb:AAD05185.1%3B (AF110185) unknown [Burkholderia pseudomallei]%3B E%3D4e-23 COG: PA2391%3B COG1538 Outer membrane protein%3B E%3D1e-25 PFAM: PF02321%3B Outer membrane efflux protein%3B E%3D1.3e-18 gene gene6203 http://www.ncbi.nlm.nih.gov/gene/?term=RB11155 RB11156 RB11156 RB11156 6055022 6056074 - squalene-hopene cyclase PMID: 1729216 PMID: 9532806 PMID: 2253626 PMID: 9295270 best DB hits: BLAST: pir:T35404%3B probable squalene-hopene cyclase - Streptomyces%3B E%3D1e-04 pir:A43300%3B squalene-hopene cyclase (EC 5.4.99.-) - Alicyclobacillus%3B E%3D0.008 gb:AAA75452.1%3B (M73834) squalene-hopene-cyclase [Alicyclobacillus%3B E%3D0.008 PFAM: PF01264%3B Chorismate synthase%3B E%3D0.74 PF00432%3B Prenyltransferase and squalen%3B E%3D0.00015 gene gene6204 http://www.ncbi.nlm.nih.gov/gene/?term=RB11156 RB11157 RB11157 arsC arsC 6056146 6056496 - arsenate reductase PMID: 8674982 best DB hits: BLAST: pir:C81247%3B arsenate reductase NMB0005 [imported] - Neisseria%3B E%3D8e-26 gb:AAG57605.1%3B AE005479_3 (AE005479) oxidoreductase%3B E%3D6e-25 swissprot:P76569%3B YFGD_ECOLI PROTEIN YFGD ----- pir: F65025%3B E%3D6e-25 COG: NMB0005%3B COG1393 Arsenate reductase and related proteins%2C%3B E%3D8e-27 yfgD%3B COG1393 Arsenate reductase and related proteins%2C glutaredoxin%3B E%3D7e-26 VC2165%3B COG1393 Arsenate reductase and related proteins%2C%3B E%3D3e-25 gene gene6205 http://www.ncbi.nlm.nih.gov/gene/?term=RB11157 RB11160 RB11160 RB11160 6056587 6057378 - hypothetical protein PMID: 11337471 best DB hits: BLAST: gb:AAK04894.1%3B AE006313_1 (AE006313) HYPOTHETICAL PROTEIN%3B E%3D0.051 pir:T02333%3B hypothetical protein F13P17.29 - Arabidopsis thaliana%3B E%3D0.093 pir:T34378%3B hypothetical protein T25G12.7 - Caenorhabditis elegans%3B E%3D0.095 PFAM: PF01118%3B Semialdehyde dehydrogenase%2C NA%3B E%3D0.095 gene gene6206 http://www.ncbi.nlm.nih.gov/gene/?term=RB11160 RB11162 RB11162 RB11162 6057379 6059295 - hypothetical protein gene gene6207 http://www.ncbi.nlm.nih.gov/gene/?term=RB11162 RB11165 RB11165 nrfA nrfA 6059348 6060913 - catalytic subunit of cytochrome c nitrite reductase PMID: 20138370 best DB hits: BLAST: pir:B81280%3B probable periplasmic cytochrome C Cj1357c [imported] -%3B E%3D1e-50 embl:CAB53160.1%3B (AJ245540) catalytic subunit of cytochrome c%3B E%3D5e-42 embl:CAB37320.1%3B (AJ133037) cytochrome c nitrite reductase%3B E%3D5e-37 COG: Cj1357c%3B COG3303 Nitrite reductase%2C periplasmic cytochrome c subunit%3B E%3D9e-52 PFAM: PF02335%3B Cytochrome c552%3B E%3D0.032 gene gene6208 http://www.ncbi.nlm.nih.gov/gene/?term=RB11165 RB11167 RB11167 nrfC nrfC 6060983 6061519 - small subunit of cytochrome c nitrite reductase PMID: 20138370 best DB hits: BLAST: pir:C81280%3B probable periplasmic cytochrome C Cj1358c [imported] -%3B E%3D1e-21 embl:CAB53159.1%3B (AJ245540) small subunit of cytochrome c nitrite%3B E%3D1e-18 pir:A82138%3B cytochrome c-type protein YecK VC1951 [imported] -%3B E%3D1e-05 COG: Cj1358c%3B COG3005 Nitrate/TMAO reductases%2C membrane-bound tetraheme%3B E%3D1e-22 gene gene6209 http://www.ncbi.nlm.nih.gov/gene/?term=RB11167 RB11168 RB11168 moaB moaB 6061728 6062177 - MPT-synthase sulfurylase PMID: 20086437 best DB hits: BLAST: pir:S76179%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D3e-04 embl:CAA76284.1%3B (Y16560) MPT-synthase sulfurylase [Synechococcus%3B E%3D4e-04 gb:AAF33130.1%3B AF196567_6 (AF196567) sulfurylase%3B E%3D0.003 COG: sll1536_2%3B COG0607 Rhodanese-related sulfurtransferases%3B E%3D3e-05 PFAM: PF00581%3B Rhodanese-like domain%3B E%3D2.8e-06 gene gene6210 http://www.ncbi.nlm.nih.gov/gene/?term=RB11168 RB11169 RB11169 RB11169 6062211 6062405 + hypothetical protein gene gene6211 http://www.ncbi.nlm.nih.gov/gene/?term=RB11169 RB11171 RB11171 merR merR 6062402 6063142 + MerR family transcriptional regulator PMID: 10567266 best DB hits: BLAST: pir:D75273%3B transcriptional regulator%2C MerR family - Deinococcus%3B E%3D9e-08 embl:CAB61592.1%3B (AL133210) DNA polymerase III beta%3B E%3D1e-05 embl:CAB88450.1%3B (AL353815) merR-family transcriptional%3B E%3D1e-05 COG: DR2448%3B COG0789 Predicted transcriptional regulators%3B E%3D8e-09 gene gene6212 http://www.ncbi.nlm.nih.gov/gene/?term=RB11171 RB11173 RB11173 RB11173 6063194 6063586 + hypothetical protein PMID: 9679194 best DB hits: BLAST: pir:F71051%3B hypothetical protein PH1109 - Pyrococcus horikoshii%3B E%3D3e-12 pir:H72254%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D6e-12 pir:F75091%3B hypothetical protein PAB1624 - Pyrococcus abyssi (strain%3B E%3D8e-12 COG: PH1109%3B COG1832 Uncharacterized ACR%3B E%3D3e-13 AF0932%3B COG1042 Acyl-CoA synthetase (NDP forming)%3B E%3D8e-11 Ta1005%3B COG1832 Uncharacterized ACR%3B E%3D2e-09 PFAM: PF02629%3B Uncharacterized ACR%2C COG1832%3B E%3D4e-13 gene gene6213 http://www.ncbi.nlm.nih.gov/gene/?term=RB11173 RB11174 RB11174 RB11174 6063637 6065046 - hypothetical protein PMID: 10567266 best DB hits: BLAST: pir:E75584%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D2e-54 ddbj:BAA86645.1%3B (AB033763) hypothetical protein [Staphylococcus%3B E%3D4e-45 pir:T44111%3B conserved hypothetical protein [imported] -%3B E%3D2e-33 COG: DRA0304_1%3B COG0491 Zn-dependent hydrolases%2C including glyoxylases%3B E%3D5e-42 MTH1096%3B COG0607 Rhodanese-related sulfurtransferases%3B E%3D6e-17 BS_yrkH%3B COG0491 Zn-dependent hydrolases%2C including glyoxylases%3B E%3D2e-16 PFAM: PF00753%3B Metallo-beta-lactamase superfamil%3B E%3D6.1e-25 PF00581%3B Rhodanese-like domain%3B E%3D0.0017 gene gene6214 http://www.ncbi.nlm.nih.gov/gene/?term=RB11174 RB11176 RB11176 RB11176 6065144 6065605 - hypothetical protein PMID: 20365717 best DB hits: BLAST: pir:E82766%3B conserved hypothetical protein XF0768 [imported] -%3B E%3D2e-09 pir:C81827%3B hypothetical protein NMA1982 [imported] - Neisseria%3B E%3D8e-04 pir:F81048%3B conserved hypothetical protein NMB1727 [imported] -%3B E%3D0.001 gene gene6215 http://www.ncbi.nlm.nih.gov/gene/?term=RB11176 RB11177 RB11177 RB11177 6065633 6065842 + hypothetical protein gene gene6216 http://www.ncbi.nlm.nih.gov/gene/?term=RB11177 RB11179 RB11179 uspA uspA 6065843 6066880 + universal stress protein PMID: 8688087 best DB hits: BLAST: swissprot:Q57951%3B Y531_METJA HYPOTHETICAL PROTEIN MJ0531 -----%3B E%3D4e-10 ddbj:BAB03102.1%3B (AP002040) gene_id:MEC18.3~~unknown protein%3B E%3D2e-08 pir:A69220%3B conserved hypothetical protein MTH898 - Methanobacterium%3B E%3D2e-08 COG: MJ0531%3B COG0589 Universal stress protein UspA and related%3B E%3D4e-11 PFAM: PF00582%3B Universal stress protein family%3B E%3D3.9e-11 gene gene6217 http://www.ncbi.nlm.nih.gov/gene/?term=RB11179 RB1118 RB1118 RB1118 574507 574932 - hypothetical protein PMID: 8905231 best DB hits: BLAST: pir:S75930%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D7e-09 pir:A57426%3B puc expression activator appA - Rhodobacter sphaeroides%3B E%3D4e-06 pir:H64861%3B hypothetical protein b1163 - Escherichia coli -----%3B E%3D3e-04 gene gene588 http://www.ncbi.nlm.nih.gov/gene/?term=RB1118 RB11181 RB11181 RB11181 6067002 6067109 + signal peptide gene gene6218 http://www.ncbi.nlm.nih.gov/gene/?term=RB11181 RB11183 RB11183 uspA uspA 6067293 6068240 - hypothetical protein PMID: 9371463 best DB hits: BLAST: pir:A69220%3B conserved hypothetical protein MTH898 - Methanobacterium%3B E%3D1e-07 gb:AAD46412.1%3B AF096262_1 (AF096262) ER6 protein [Lycopersicon%3B E%3D1e-05 gb:AAK04173.1%3B AE006246_3 (AE006246) conserved hypothetical%3B E%3D2e-05 COG: MTH898%3B COG0589 Universal stress protein UspA and related%3B E%3D1e-08 PFAM: PF00582%3B Universal stress protein family%3B E%3D4e-11 gene gene6219 http://www.ncbi.nlm.nih.gov/gene/?term=RB11183 RB11184 RB11184 RB11184 6068316 6068441 - signal peptide gene gene6220 http://www.ncbi.nlm.nih.gov/gene/?term=RB11184 RB11185 RB11185 uspA uspA 6068431 6069342 - universal stress protein PMID: 8905231 best DB hits: BLAST: swissprot:P74148%3B YD88_SYNY3 HYPOTHETICAL 17.3 KD PROTEIN SLL1388%3B E%3D2e-05 gb:AAG20091.1%3B (AE005088) Vng1898c [Halobacterium sp. NRC-1]%3B E%3D5e-05 swissprot:Q57951%3B Y531_METJA HYPOTHETICAL PROTEIN MJ0531 -----%3B E%3D7e-04 COG: sll1388%3B COG0589 Universal stress protein UspA and related%3B E%3D2e-06 PFAM: PF00582%3B Universal stress protein family%3B E%3D0.04 gene gene6221 http://www.ncbi.nlm.nih.gov/gene/?term=RB11185 RB11186 RB11186 sasR sasR 6069339 6070814 - NtrC-like response regulator SasR best DB hits: BLAST: gb:AAG45333.1%3B AF273214_1 (AF273214) SasR [Myxococcus xanthus]%3B E%3D3e-83 swissprot:Q06065%3B ATOC_ECOLI ACETOACETATE METABOLISM REGULATORY%3B E%3D1e-81 gb:AAC28085.1%3B (AF100457) response regulator [Myxococcus xanthus]%3B E%3D5e-80 COG: atoC%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D1e-82 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D2.7e-32 PF00158%3B Sigma-54 interaction domain%3B E%3D1.1e-119 gene gene6222 http://www.ncbi.nlm.nih.gov/gene/?term=RB11186 RB11190 RB11190 RB11190 6070940 6071212 - hypothetical protein gene gene6223 http://www.ncbi.nlm.nih.gov/gene/?term=RB11190 RB11191 RB11191 hydH hydH 6071180 6072646 + sensor kinase of the HydH/G two-component system PMID: 2666400 PMID: 11243806 best DB hits: BLAST: gb:AAG59806.1%3B AF305914_1 (AF305914) HydH [Klebsiella oxytoca]%3B E%3D2e-23 gb:AAG09417.1%3B AF180147_9 (AF180147) bZIP histidine kinase TobS%3B E%3D5e-23 embl:CAB43735.1%3B (Y18245) bZIP histidine kinase [Pseudomonas%3B E%3D6e-23 COG: BH1920%3B COG0642 Sensory transduction histidine kinases%3B E%3D2e-22 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D1.2e-21 PF00989%3B PAS domain%3B E%3D1e-08 PF00785%3B PAC motif%3B E%3D0.053 gene gene6224 http://www.ncbi.nlm.nih.gov/gene/?term=RB11191 RB11194 RB11194 phnA phnA 6072695 6073078 - PhnA protein PMID: 2155230 best DB hits: BLAST: pir:A83631%3B conserved hypothetical protein PA0128 [imported] -%3B E%3D2e-34 swissprot:P16680%3B PHNA_ECOLI PHNA PROTEIN ----- pir: B35718%3B E%3D5e-29 pir:F82023%3B PhnA protein homolog NMA0283 [imported] - Neisseria%3B E%3D3e-27 COG: PA0128%3B COG2824 Uncharacterized Zn-ribbon-containing protein%3B E%3D2e-35 phnA%3B COG2824 Uncharacterized Zn-ribbon-containing protein involved%3B E%3D5e-30 NMB0037%3B COG2824 Uncharacterized Zn-ribbon-containing protein%3B E%3D2e-27 gene gene6225 http://www.ncbi.nlm.nih.gov/gene/?term=RB11194 RB11195 RB11195 RB11195 6073112 6074515 + hypothetical protein best DB hits: PFAM: PF01485%3B IBR domain%3B E%3D0.38 gene gene6226 http://www.ncbi.nlm.nih.gov/gene/?term=RB11195 RB11199 RB11199 RB11199 6073532 6074206 - DNA-directed DNA polymerase best DB hits: BLAST: gb:AAD21990.1%3B (AF110998) DNA-directed DNA polymerase [snow goose%3B E%3D0.70 gb:AAD21980.1%3B (AF110996) DNA-directed DNA polymerase [snow goose%3B E%3D0.75 gb:AAD21985.1%3B (AF110997) DNA-directed DNA polymerase [snow goose%3B E%3D0.75 gene gene6227 http://www.ncbi.nlm.nih.gov/gene/?term=RB11199 RB112 RB112 RB112 49329 50216 - hypothetical protein gene gene62 http://www.ncbi.nlm.nih.gov/gene/?term=RB112 RB1120 RB1120 RB1120 575033 576988 - hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:B83071%3B hypothetical protein PA4592 [imported] - Pseudomonas%3B E%3D1e-04 PFAM: PF02321%3B Outer membrane efflux protein%3B E%3D0.00035 gene gene589 http://www.ncbi.nlm.nih.gov/gene/?term=RB1120 RB11201 RB11201 rcp1 rcp1 6074761 6075201 - response regulator rcp1 PMID: 7699720 PMID: 9278513 best DB hits: BLAST: embl:CAB62661.1%3B (AL133422) hypothetical protein SCM1.03c.%3B E%3D8e-33 pir:D75276%3B response regulator - Deinococcus radiodurans (strain R1)%3B E%3D1e-31 swissprot:Q55169%3B RCP1_SYNY3 RESPONSE REGULATOR RCP1 -----%3B E%3D1e-25 COG: DR2420%3B COG0784 CheY-like receiver domains%3B E%3D1e-32 slr0115%3B COG0745 Response regulators consisting of a CheY-like%3B E%3D2e-09 sll0039%3B COG0784 CheY-like receiver domains%3B E%3D6e-09 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D6.5e-19 gene gene6228 http://www.ncbi.nlm.nih.gov/gene/?term=RB11201 RB11203 RB11203 cph1 cph1 6075155 6076903 - light-regulated histidine kinase 1 PMID: 10567266 best DB hits: BLAST: pir:C75276%3B sensory box sensor histidine kinase - Deinococcus%3B E%3D8e-45 swissprot:Q55168%3B PHY1_SYNY3 PHYTOCHROME-LIKE PROTEIN CPH1%3B E%3D1e-41 embl:CAB62662.1%3B (AL133422) two-component sensor%3B E%3D2e-41 COG: DR2419_2%3B COG0642 Sensory transduction histidine kinases%3B E%3D8e-46 PFAM: PF00512%3B His Kinase A (phosphoacceptor) doma%3B E%3D1e-12 PF02518%3B Histidine kinase-%2C DNA gyrase B-%2C p%3B E%3D3.5e-35 gene gene6229 http://www.ncbi.nlm.nih.gov/gene/?term=RB11203 RB11204 RB11204 RB11204 6076852 6077364 - hypothetical protein gene gene6230 http://www.ncbi.nlm.nih.gov/gene/?term=RB11204 RB11205 RB11205 merA merA 6077380 6078903 - mercuric reductase Enables the enzymatic reduction of mercuric ions to elemental mercury gene gene6231 http://www.ncbi.nlm.nih.gov/gene/?term=RB11205 RB11207 RB11207 RB11207 6078964 6080580 - hypothetical protein PMID: 8590279 best DB hits: BLAST: swissprot:Q55909%3B Y305_SYNY3 HYPOTHETICAL 22.2 KD PROTEIN SLR0305%3B E%3D2e-40 gb:AAB72174.1%3B (AF000657) unknown protein [Arabidopsis thaliana]%3B E%3D3e-33 gb:AAC72122.1%3B (AC005278) F15K9.14 [Arabidopsis thaliana]%3B E%3D1e-27 COG: slr0305%3B COG0398 Uncharacterized ACR%3B E%3D2e-41 aq_2066%3B COG1238 Uncharacterized membrane protein%3B E%3D7e-04 BS_yhjE%3B COG0398 Uncharacterized ACR%3B E%3D8e-04 gene gene6232 http://www.ncbi.nlm.nih.gov/gene/?term=RB11207 RB11208 RB11208 RB11208 6080584 6081078 + hypothetical protein gene gene6233 http://www.ncbi.nlm.nih.gov/gene/?term=RB11208 RB11209 RB11209 RB11209 6080603 6080914 + hypothetical protein gene gene6234 http://www.ncbi.nlm.nih.gov/gene/?term=RB11209 RB11210 RB11210 RB11210 6080653 6080955 - hypothetical protein gene gene6235 http://www.ncbi.nlm.nih.gov/gene/?term=RB11210 RB11211 RB11211 yjhQ yjhQ 6081008 6081550 + acetyltransferase yjhQ PMID: 9175471 PMID: 9727486 best DB hits: BLAST: gb:AAK04154.1%3B AE006244_3 (AE006244) HYPOTHETICAL PROTEIN%3B E%3D2e-12 pir:B82297%3B probable acetyltransferase VC0655 [imported] - Vibrio%3B E%3D7e-12 pir:H83557%3B hypothetical protein PA0711 [imported] - Pseudomonas%3B E%3D2e-11 COG: VC0655%3B COG3153 Predicted acetyltransferase%3B E%3D7e-13 PFAM: PF00583%3B Acetyltransferase (GNAT) family%3B E%3D1.1e-16 gene gene6236 http://www.ncbi.nlm.nih.gov/gene/?term=RB11211 RB11216 RB11216 RB11216 6081689 6081943 + ferredoxin PMID: 2106913 PMID: 3932661 PMID: 2506358 PMID: 2600971 best DB hits: BLAST: embl:CAC04216.1%3B (AL391515) ferredoxin [Streptomyces coelicolor%3B E%3D3e-16 embl:CAC05765.1%3B (AL391751) ferredoxin [Streptomyces%3B E%3D6e-16 swissprot:P13279%3B FER_STRGR FERREDOXIN ----- pir: S08287%3B E%3D2e-15 COG: Rv1177%3B COG1146 Ferredoxin 3%3B E%3D7e-16 VC1512%3B COG0437 Fe-S-cluster-containing hydrogenase components 1%3B E%3D5e-05 Rv0886_1%3B COG1146 Ferredoxin 3%3B E%3D2e-04 PFAM: PF00037%3B 4Fe-4S binding domain%3B E%3D1.9e-07 gene gene6237 http://www.ncbi.nlm.nih.gov/gene/?term=RB11216 RB11217 RB11217 RB11217 6081958 6083022 - dinitrogenase reductase activating glycohydrolase (draG) PMID: 11315111 best DB hits: BLAST: gb:AAB89527.1%3B (AE000984) dinitrogenase reductase activating%3B E%3D8e-11 pir:JC4745%3B ADP-ribosyl-nitrogenase hydrolase (EC 3.2.2.24) - rice%3B E%3D1e-06 pir:I39752%3B ADP-ribosyl-nitrogenase hydrolase (EC 3.2.2.24) -%3B E%3D1e-06 COG: AF1724%3B COG1397 ADP-ribosylglycohydrolase%3B E%3D7e-12 gene gene6238 http://www.ncbi.nlm.nih.gov/gene/?term=RB11217 RB11219 RB11219 RB11219 6083086 6083640 - RNA 2-phosphotransferase PMID: 9915792 best DB hits: BLAST: swissprot:Q9ZBX9%3B KPTA_STRCO PROBABLE RNA 2'-PHOSPHOTRANSFERASE%3B E%3D3e-42 swissprot:Q9I778%3B KPTA_PSEAE PROBABLE RNA 2'-PHOSPHOTRANSFERASE%3B E%3D5e-42 pir:S56556%3B hypothetical 24.6K protein (iadA-mcrD intergenic region)%3B E%3D1e-41 COG: PA0054%3B COG1859 Uncharacterized ACR%3B E%3D4e-43 PFAM: PF01885%3B Domain of unknown function DUF60%3B E%3D9.2e-62 gene gene6239 http://www.ncbi.nlm.nih.gov/gene/?term=RB11219 RB1122 RB1122 RB1122 576853 578202 - toxin secretion protein PMID: 8181764 best DB hits: BLAST: embl:CAA73293.1%3B (Y12758) prsE [Rhizobium leguminosarum]%3B E%3D3e-08 swissprot:P18790%3B HLYD_ACTAC LEUKOTOXIN SECRETION PROTEIN D%3B E%3D4e-08 embl:CAC06752.1%3B (AJ293261) protein transporter PrsE%3B E%3D2e-07 COG: PA1247%3B COG0845 Membrane-fusion protein%3B E%3D4e-08 aq_1060%3B COG1566 Multidrug resistance efflux pump%3B E%3D0.004 gene gene590 http://www.ncbi.nlm.nih.gov/gene/?term=RB1122 RB11221 RB11221 RB11221 6083673 6084044 - hypothetical protein gene gene6240 http://www.ncbi.nlm.nih.gov/gene/?term=RB11221 RB11222 RB11222 RB11222 6084059 6084187 - hypothetical protein gene gene6241 http://www.ncbi.nlm.nih.gov/gene/?term=RB11222 RB11223 RB11223 arsR arsR 6084224 6084586 + metal-dependent regulatory protein PMID: 8451191 PMID: 8506147 best DB hits: BLAST: pir:E70585%3B probable transcriptional regulator Rv2358 - Mycobacterium%3B E%3D4e-07 pir:B70850%3B probable transcriptional regulator Rv0081 - Mycobacterium%3B E%3D5e-07 gb:AAG02351.1%3B AF210249_10 (AF210249) metal-dependent regulatory%3B E%3D1e-06 COG: Rv2358%3B COG0640 Predicted transcriptional regulators%3B E%3D4e-08 PFAM: PF01022%3B Bacterial regulatory protein%2C arsR f%3B E%3D1.3e-13 gene gene6242 http://www.ncbi.nlm.nih.gov/gene/?term=RB11223 RB11225 RB11225 RB11225 6084698 6085243 + hypothetical protein PMID: 9733650 PMID: 8702871 best DB hits: BLAST: swissprot:P73801%3B YC61_SYNY3 HYPOTHETICAL 19.1 KD PROTEIN SLR1261%3B E%3D5e-25 embl:CAB62750.1%3B (AL133424) hypothetical protein SCF56.05%3B E%3D6e-17 swissprot:P55734%3B YGAP_ECOLI HYPOTHETICAL 18.6 KD PROTEIN IN%3B E%3D2e-14 COG: slr1261%3B COG0607 Rhodanese-related sulfurtransferases%3B E%3D5e-26 PFAM: PF00581%3B Rhodanese-like domain%3B E%3D2.1e-15 gene gene6243 http://www.ncbi.nlm.nih.gov/gene/?term=RB11225 RB11226 RB11226 RB11226 6085171 6086055 + hypothetical protein best DB hits: BLAST: pir:H83213%3B hypothetical protein PA3457 [imported] - Pseudomonas%3B E%3D1e-08 pir:S74895%3B hypothetical protein slr1262 - Synechocystis sp. (strain%3B E%3D4e-08 pir:H70015%3B hypothetical protein yunE - Bacillus subtilis -----%3B E%3D2e-04 COG: PA3457%3B COG0730 Predicted permeases%3B E%3D1e-09 PFAM: PF01925%3B Domain of unknown function DUF81%3B E%3D3.5e-12 gene gene6244 http://www.ncbi.nlm.nih.gov/gene/?term=RB11226 RB11227 RB11227 RB11227 6086085 6087509 + hypothetical protein PMID: 7588620 best DB hits: BLAST: ddbj:BAA86645.1%3B (AB033763) hypothetical protein [Staphylococcus%3B E%3D9e-94 pir:E75584%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D3e-90 pir:T44111%3B conserved hypothetical protein [imported] -%3B E%3D2e-76 COG: DRA0304_1%3B COG0491 Zn-dependent hydrolases%2C including glyoxylases%3B E%3D3e-63 DRA0304_2%3B COG0607 Rhodanese-related sulfurtransferases%3B E%3D2e-22 BS_yrkH%3B COG0491 Zn-dependent hydrolases%2C including glyoxylases%3B E%3D2e-17 PFAM: PF00753%3B Metallo-beta-lactamase superfamil%3B E%3D7.1e-27 PF00581%3B Rhodanese-like domain%3B E%3D0.02 gene gene6245 http://www.ncbi.nlm.nih.gov/gene/?term=RB11227 RB11228 RB11228 RB11228 6087471 6087599 - hypothetical protein gene gene6246 http://www.ncbi.nlm.nih.gov/gene/?term=RB11228 RB11230 RB11230 bfr bfr 6087671 6088150 + bacterioferritin PMID: 2276500 PMID: 1904771 PMID: 8695634 PMID: 8526846 PMID: 7664064 PMID: 7559480 best DB hits: BLAST: swissprot:Q59738%3B BFR_RHOCA BACTERIOFERRITIN (BFR) ----- embl:%3B E%3D9e-22 swissprot:P49944%3B BFR_BRUME BACTERIOFERRITIN (BFR) ----- pir:%3B E%3D4e-21 pir:H82810%3B bacterioferritin XF0395 [imported] - Xylella fastidiosa%3B E%3D7e-19 COG: XF0395%3B COG2193 Bacterioferritin (cytochrome b1)%3B E%3D7e-20 BS_yhjR%3B COG1633 Uncharacterized ACR%3B E%3D0.004 AF0832%3B COG1592 Rubrerythrin%3B E%3D0.009 PFAM: PF01334%3B Bacterioferritin%3B E%3D9.1e-39 gene gene6247 http://www.ncbi.nlm.nih.gov/gene/?term=RB11230 RB11231 RB11231 RB11231 6088214 6089386 + hypothetical protein best DB hits: BLAST: gb:AAB90342.1%3B (AE001041) A. fulgidus predicted coding region%3B E%3D0.001 COG: AF0913%3B COG1416 Uncharacterized ACR%3B E%3D1e-04 PFAM: PF01406%3B tRNA synthetases class I (C)%3B E%3D0.52 gene gene6248 http://www.ncbi.nlm.nih.gov/gene/?term=RB11231 RB11233 RB11233 RB11233 6089453 6090340 - hypothetical protein gene gene6249 http://www.ncbi.nlm.nih.gov/gene/?term=RB11233 RB11235 RB11235 RB11235 6090398 6090991 + hypothetical protein gene gene6250 http://www.ncbi.nlm.nih.gov/gene/?term=RB11235 RB11236 RB11236 RB11236 6091005 6091187 + hypothetical protein gene gene6251 http://www.ncbi.nlm.nih.gov/gene/?term=RB11236 RB11238 RB11238 czcB czcB 6091324 6092547 + cobalt-zinc-cadmium resistance protein PMID: 2249654 PMID: 2184029 best DB hits: BLAST: gb:AAG09628.1%3B (AY007258) CztB [Pseudomonas fluorescens]%3B E%3D6e-17 pir:F83330%3B RND divalent metal cation efflux membrane fusion protein%3B E%3D2e-15 embl:CAB56470.1%3B (Y14018) czrB protein [Pseudomonas aeruginosa]%3B E%3D2e-14 COG: PA2521%3B COG0845 Membrane-fusion protein%3B E%3D1e-16 PFAM: PF00364%3B Biotin-requiring enzyme%3B E%3D4.2e-05 PF00529%3B HlyD family secretion protein%3B E%3D0.37 gene gene6252 http://www.ncbi.nlm.nih.gov/gene/?term=RB11238 RB11240 RB11240 czcA czcA 6092544 6095705 + cation efflux system protein CZCA PMID: 8829543 best DB hits: BLAST: swissprot:P94177%3B CZCA_ALCSP CATION EFFLUX SYSTEM PROTEIN CZCA%3B E%3D0.0 pir:A33830%3B cation efflux system membrane protein czcA - Alcaligenes%3B E%3D0.0 swissprot:P13511%3B CZCA_ALCEU COBALT-ZINC-CADMIUM RESISTANCE PROTEIN%3B E%3D0.0 COG: PA2520%3B COG0841 Cation/multidrug efflux pump%3B E%3D0.0 PFAM: PF00804%3B Syntaxin%3B E%3D0.39 PF00873%3B AcrB/AcrD/AcrF family%3B E%3D0 gene gene6253 http://www.ncbi.nlm.nih.gov/gene/?term=RB11240 RB11242 RB11242 sigE sigE 6095778 6096383 + extracytoplasmic function alternative sigma factor PMID: 3052291 PMID: 8052622 best DB hits: BLAST: embl:CAC01348.1%3B (AL390975) ECF-subfamily sigma factor%3B E%3D9e-08 gb:AAC45221.1%3B (U87307) extracytoplasmic function alternative%3B E%3D1e-04 embl:CAC17654.1%3B (AL450450) ECF sigma factor%3B E%3D1e-04 COG: Rv1221%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D6e-05 PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D3.3e-10 gene gene6254 http://www.ncbi.nlm.nih.gov/gene/?term=RB11242 RB11244 RB11244 RB11244 6096365 6098935 + serine/threonine protein kinase PMID: 1956325 PMID: 1835513 PMID: 3291115 best DB hits: BLAST: ddbj:BAB06223.1%3B (AP001515) serinethreonine protein kinase%3B E%3D1e-44 pir:T36501%3B probable serinethreonine protein kinase - Streptomyces%3B E%3D7e-43 pir:T36717%3B probable serinethreonine protein kinase - Streptomyces%3B E%3D3e-42 COG: BH2504_1%3B COG0515 Serine/threonine protein kinases%3B E%3D1e-45 PFAM: PF00069%3B Protein kinase domain%3B E%3D2.2e-50 gene gene6255 http://www.ncbi.nlm.nih.gov/gene/?term=RB11244 RB11245 RB11245 RB11245 6098965 6099126 - hypothetical protein gene gene6256 http://www.ncbi.nlm.nih.gov/gene/?term=RB11245 RB11247 RB11247 RB11247 6099130 6100293 - RecF protein PMID: 2229036 PMID: 3762694 PMID: 1542576 best DB hits: BLAST: pir:B83548%3B hypothetical protein PA0787 [imported] - Pseudomonas%3B E%3D2e-96 gb:AAG45955.1%3B AF282921_1 (AF282921) RecF protein%3B E%3D7e-35 gb:AAB90237.1%3B (AE001034) A. fulgidus predicted coding region%3B E%3D0.005 PFAM: PF00005%3B ABC transporter%3B E%3D0.0014 PF00470%3B RecF protein%3B E%3D0.34 PF02463%3B SMC domain N terminal domain%3B E%3D0.11 gene gene6257 http://www.ncbi.nlm.nih.gov/gene/?term=RB11247 RB11248 RB11248 RB11248 6100290 6101252 - protein-S-isoprenylcysteine methyltransferase best DB hits: BLAST: pir:T37506%3B protein-S-isoprenylcysteine O-methyltransferase (EC%3B E%3D0.095 gene gene6258 http://www.ncbi.nlm.nih.gov/gene/?term=RB11248 RB11249 RB11249 RB11249 6101311 6102588 - acyl-CoA thioesterase best DB hits: BLAST: swissprot:P29679%3B TESA_ECOLI ACYL-COA THIOESTERASE I PRECURSOR%3B E%3D0.28 gb:AAB40248.1%3B (U82664) acyl-coA thioesterase I precursor%3B E%3D0.28 gb:AAG54851.1%3B AE005230_11 (AE005230) acyl-CoA thioesterase I%3B E%3D0.32 gene gene6259 http://www.ncbi.nlm.nih.gov/gene/?term=RB11249 RB1125 RB1125 RB1125 578282 580393 - ABC transporter ATP-binding protein PMID: 8181764 best DB hits: BLAST: pir:H82381%3B toxin secretion ATP-binding protein VCA1084 [imported] -%3B E%3D2e-12 pir:S75806%3B hemolysin secretion protein hlyB - Synechocystis sp.%3B E%3D6e-12 gb:AAD21059.1%3B (AF119150) RtxB protein [Vibrio cholerae]%3B E%3D6e-12 COG: VCA1084%3B COG2274 ABC-type bacteriocin/lantibiotic exporters%2C contain%3B E%3D2e-13 sll1180_2%3B COG2274 ABC-type bacteriocin/lantibiotic exporters%2C%3B E%3D5e-13 VC1448%3B COG1132 ABC-type multidrug/protein/lipid transport system%2C%3B E%3D6e-13 PFAM: PF00664%3B ABC transporter transmembrane re%3B E%3D0.046 PF00005%3B ABC transporter%3B E%3D6.8e-06 gene gene591 http://www.ncbi.nlm.nih.gov/gene/?term=RB1125 RB11252 RB11252 cypX cypX 6102783 6104327 + cytochrome P450 T9E850 PMID: 20411542 best DB hits: BLAST: pir:T06288%3B probable cytochrome P450 T9E8.50 - Arabidopsis thaliana%3B E%3D5e-14 ddbj:BAA31438.1%3B (AB010393) ALK6 [Yarrowia lipolytica]%3B E%3D3e-13 pir:C81286%3B probable cytochrome P450 Cj1411c [imported] -%3B E%3D5e-13 COG: Cj1411c%3B COG2124 Cytochrome P450%3B E%3D4e-14 PFAM: PF00067%3B Cytochrome P450%3B E%3D1e-20 gene gene6260 http://www.ncbi.nlm.nih.gov/gene/?term=RB11252 RB11253 RB11253 pgsA pgsA 6104491 6105171 - phosphatidylglycerophosphate synthase PMID: 8576035 PMID: 3031032 best DB hits: BLAST: prf:2206391A%3B phosphatidylglycerophosphate synthase [Rhodobacter%3B E%3D2e-04 gb:AAG44472.1%3B AF241784_1 (AF241784) CAPTase-iso [Homo sapiens]%3B E%3D7e-04 swissprot:Q50611%3B PGSA_MYCTU%3B E%3D0.004 COG: Rv1822%3B COG0558 Phosphatidylglycerophosphate synthase%3B E%3D4e-04 PFAM: PF01066%3B CDP-alcohol phosphatidyltrans%3B E%3D0.00012 gene gene6261 http://www.ncbi.nlm.nih.gov/gene/?term=RB11253 RB11255 RB11255 RB11255 6105168 6106130 - phosphatidate cytidylyltransferase PMID: 2995359 PMID: 8557688 best DB hits: BLAST: gb:AAG56370.1%3B AE005365_4 (AE005365) phosphatidate%3B E%3D4e-24 swissprot:P76091%3B YNBB_ECOLI HYPOTHETICAL 33.1 KD PROTEIN IN%3B E%3D3e-22 pir:H82138%3B probable phosphatidate cytidylyltransferase VC1936%3B E%3D5e-22 COG: ynbB%3B COG0575 CDP-diglyceride synthetase%3B E%3D3e-23 PFAM: PF01148%3B Phosphatidate cytidylyltransfe%3B E%3D4.9e-16 gene gene6262 http://www.ncbi.nlm.nih.gov/gene/?term=RB11255 RB11258 RB11258 RB11258 6106127 6106840 - hypothetical protein best DB hits: BLAST: pir:C82165%3B conserved hypothetical protein VC1723 [imported] -%3B E%3D6e-12 swissprot:P71772%3B YE91_MYCTU HYPOTHETICAL 26.6 KDA PROTEIN RV1491C%3B E%3D8e-07 pir:B71448%3B hypothetical protein - Arabidopsis thaliana -----%3B E%3D1e-04 COG: VC1723%3B COG0398 Uncharacterized ACR%3B E%3D5e-13 gene gene6263 http://www.ncbi.nlm.nih.gov/gene/?term=RB11258 RB11260 RB11260 dksA dksA 6106837 6107202 - dnaK (dksA-like) supressor protein PMID: 2180916 best DB hits: BLAST: pir:E81429%3B dksA-like protein Cj0125c [imported] - Campylobacter%3B E%3D1e-09 pir:D71366%3B probable dnaK suppressor - syphilis spirochete -----%3B E%3D2e-06 pir:T35472%3B hypothetical protein SC6C5.01 SC6C5.01 - Streptomyces%3B E%3D8e-06 COG: Cj0125c%3B COG1734 DnaK suppressor protein%3B E%3D2e-10 PFAM: PF01258%3B Prokaryotic dksA/traR C4-type zi%3B E%3D3.2e-10 gene gene6264 http://www.ncbi.nlm.nih.gov/gene/?term=RB11260 RB11262 RB11262 RB11262 6107307 6108302 - hypothetical protein best DB hits: BLAST: pir:D83268%3B conserved hypothetical protein PA3023 [imported] -%3B E%3D6e-20 swissprot:P76407%3B YEGS_ECOLI HYPOTHETICAL 32.0 KDA PROTEIN IN%3B E%3D9e-14 gb:AAG57146.1%3B AE005435_4 (AE005435) orf%2C hypothetical protein%3B E%3D3e-13 COG: PA3023%3B COG1597 Uncharacterized ACR%3B E%3D6e-21 PFAM: PF00781%3B Diacylglycerol kinase catalyti%3B E%3D0.0004 gene gene6265 http://www.ncbi.nlm.nih.gov/gene/?term=RB11262 RB11266 RB11266 cpdA cpdA 6108475 6109389 + 3'%2C5'-cyclic-nucleotide phosphodiesterase best DB hits: BLAST: pir:C69097%3B 3'%2C5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17)%3B E%3D8e-16 pir:A70360%3B 3'%2C5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17)%3B E%3D7e-13 pir:F69104%3B 3'%2C5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17)%3B E%3D2e-11 COG: MTH1722%3B COG1409 Predicted phosphohydrolases%3B E%3D8e-17 APE0113%3B COG0420 DNA repair exonuclease%3B E%3D0.001 HI0399%3B COG1409 Predicted phosphohydrolases%3B E%3D0.001 PFAM: PF02549%3B DNA repair exonuclease%3B E%3D4.2e-06 gene gene6266 http://www.ncbi.nlm.nih.gov/gene/?term=RB11266 RB11268 RB11268 RB11268 6109475 6109768 - hypothetical protein gene gene6267 http://www.ncbi.nlm.nih.gov/gene/?term=RB11268 RB11269 RB11269 RB11269 6109738 6110583 + cytochrome c PMID: 10984043 best DB hits: BLAST: pir:A83334%3B hypothetical protein PA2481 [imported] - Pseudomonas%3B E%3D4e-27 pir:E83075%3B probable cytochrome c PA4571 [imported] - Pseudomonas%3B E%3D8e-27 pir:D81360%3B cytochrome C Cj0874c [imported] - Campylobacter jejuni%3B E%3D8e-23 COG: PA2481%3B COG3258 Cytochrome c%3B E%3D4e-28 gene gene6268 http://www.ncbi.nlm.nih.gov/gene/?term=RB11269 RB11271 RB11271 RB11271 6110602 6110868 + hypothetical protein gene gene6269 http://www.ncbi.nlm.nih.gov/gene/?term=RB11271 RB11273 RB11273 bcr bcr 6110901 6112127 + bicyclomycin resistance protein PMID: 8486276 best DB hits: BLAST: gb:AAD03845.1%3B (AF079317) unknown [Sphingomonas aromaticivorans]%3B E%3D2e-33 pir:T50593%3B probable membrane transport protein [imported] -%3B E%3D4e-24 pir:H83198%3B probable MFS transporter PA3573 [imported] - Pseudomonas%3B E%3D1e-20 COG: PA3573%3B COG0477 Permeases of the major facilitator superfamily%3B E%3D1e-21 PFAM: PF00083%3B Sugar (and other) transporter%3B E%3D1.9e-13 gene gene6270 http://www.ncbi.nlm.nih.gov/gene/?term=RB11273 RB11276 RB11276 RB11276 6112296 6115085 + signal peptide gene gene6271 http://www.ncbi.nlm.nih.gov/gene/?term=RB11276 RB11279 RB11279 RB11279 6115040 6116548 + related to sulfatase best DB hits: BLAST: gb:AAK03766.1%3B (AE006204) unknown [Pasteurella multocida]%3B E%3D0.63 gene gene6272 http://www.ncbi.nlm.nih.gov/gene/?term=RB11279 RB11280 RB11280 RB11280 6116562 6116975 - hypothetical protein gene gene6273 http://www.ncbi.nlm.nih.gov/gene/?term=RB11280 RB11282 RB11282 RB11282 6116951 6117670 + signal peptide gene gene6274 http://www.ncbi.nlm.nih.gov/gene/?term=RB11282 RB11283 RB11283 RB11283 6117649 6117804 - hypothetical protein gene gene6275 http://www.ncbi.nlm.nih.gov/gene/?term=RB11283 RB11284 RB11284 RB11284 6117762 6117917 + hypothetical protein gene gene6276 http://www.ncbi.nlm.nih.gov/gene/?term=RB11284 RB11286 RB11286 tspO tspO 6117961 6118356 + TspO/MBR family protein PMID: 11097914 best DB hits: BLAST: pir:G69987%3B hypothetical protein ytaB - Bacillus subtilis -----%3B E%3D3e-08 gb:AAF01195.1%3B AF179401_4 (AF179401) TspO [Sinorhizobium meliloti]%3B E%3D2e-07 pir:A57438%3B tryptophan-rich sensory protein [similarity] -%3B E%3D4e-04 PFAM: PF01061%3B ABC-2 type transporter%3B E%3D0.09 gene gene6277 http://www.ncbi.nlm.nih.gov/gene/?term=RB11286 RB11287 RB11287 RB11287 6118405 6118632 + hypothetical protein gene gene6278 http://www.ncbi.nlm.nih.gov/gene/?term=RB11287 RB11288 RB11288 RB11288 6118710 6119525 + hypothetical protein PMID: 11466286 best DB hits: BLAST: pir:F75526%3B hypothetical protein - Deinococcus radiodurans (strain%3B E%3D0.012 gene gene6279 http://www.ncbi.nlm.nih.gov/gene/?term=RB11288 RB11289 RB11289 RB11289 6119539 6120036 + hypothetical protein gene gene6280 http://www.ncbi.nlm.nih.gov/gene/?term=RB11289 RB1129 RB1129 RB1129 580584 583271 - hypothetical protein PMID: 10952301 best DB hits: BLAST: pir:H82182%3B conserved hypothetical protein VC1582 [imported] -%3B E%3D1e-112 pir:G70374%3B hypothetical protein aq_863 - Aquifex aeolicus -----%3B E%3D2e-70 pir:E69745%3B hypothetical protein ybcD - Bacillus subtilis -----%3B E%3D7e-63 COG: VC1582%3B COG3002 Uncharacterized BCR%3B E%3D1e-113 gene gene592 http://www.ncbi.nlm.nih.gov/gene/?term=RB1129 RB11291 RB11291 RB11291 6120208 6120648 + mannose-6-phosphate isomerase best DB hits: BLAST: embl:CAB92104.1%3B (AL356334) hypothetical protein SCD69.03%3B E%3D0.001 pir:D70567%3B hypothetical protein Rv3471c - Mycobacterium%3B E%3D0.006 pir:A64502%3B hypothetical protein MJ1618 - Methanococcus jannaschii%3B E%3D0.052 COG: Rv3471c%3B COG0662 Mannose-6-phosphate isomerase%3B E%3D6e-04 gene gene6281 http://www.ncbi.nlm.nih.gov/gene/?term=RB11291 RB11292 RB11292 RB11292 6120684 6120881 - hypothetical protein gene gene6282 http://www.ncbi.nlm.nih.gov/gene/?term=RB11292 RB11293 RB11293 RB11293 6120889 6121182 - hypothetical protein gene gene6283 http://www.ncbi.nlm.nih.gov/gene/?term=RB11293 RB11294 RB11294 RB11294 6121139 6124990 + general secretion pathway protein E PMID: 9282737 PMID: 1971619 best DB hits: BLAST: pir:C75333%3B general secretion pathway protein E - Deinococcus%3B E%3D2e-04 pir:A72329%3B general secretion pathway protein E - Thermotoga%3B E%3D0.002 swissprot:P31599%3B NFRB_ECOLI BACTERIOPHAGE N4 ADSORPTION PROTEIN B%3B E%3D0.014 COG: DR1964%3B COG2804 Predicted ATPases involved in pili biogenesis%2C PilB%3B E%3D2e-05 gene gene6284 http://www.ncbi.nlm.nih.gov/gene/?term=RB11294 RB11296 RB11296 RB11296 6124961 6125170 - hypothetical protein gene gene6285 http://www.ncbi.nlm.nih.gov/gene/?term=RB11296 RB11298 RB11298 RB11298 6125177 6125308 + hypothetical protein gene gene6286 http://www.ncbi.nlm.nih.gov/gene/?term=RB11298 RB11299 RB11299 RB11299 6125286 6125429 - hypothetical protein gene gene6287 http://www.ncbi.nlm.nih.gov/gene/?term=RB11299 RB11300 RB11300 RB11300 6125444 6125599 - hypothetical protein gene gene6288 http://www.ncbi.nlm.nih.gov/gene/?term=RB11300 RB11301 RB11301 RB11301 6125647 6127269 + signal peptide gene gene6289 http://www.ncbi.nlm.nih.gov/gene/?term=RB11301 RB11303 RB11303 RB11303 6127205 6128599 - transposase-like protein best DB hits: BLAST: gb:AAG18661.1%3B (AE004971) Vng0021h [Halobacterium sp. NRC-1]%3B E%3D4e-23 gb:AAG18694.1%3B (AE004974) Vng0056h [Halobacterium sp. NRC-1]%3B E%3D4e-21 pir:T44318%3B transposase homolog [imported] - Vibrio cholerae -----%3B E%3D3e-16 gene gene6290 http://www.ncbi.nlm.nih.gov/gene/?term=RB11303 RB11305 RB11305 RB11305 6128704 6129624 + signal peptide best DB hits: PFAM: PF02424%3B ApbE family%3B E%3D0.71 gene gene6291 http://www.ncbi.nlm.nih.gov/gene/?term=RB11305 RB11307 RB11307 RB11307 6129599 6129709 + hypothetical protein gene gene6292 http://www.ncbi.nlm.nih.gov/gene/?term=RB11307 RB11308 RB11308 RB11308 6129721 6129960 - hypothetical protein gene gene6293 http://www.ncbi.nlm.nih.gov/gene/?term=RB11308 RB11309 RB11309 RB11309 6130032 6130220 + hypothetical protein gene gene6294 http://www.ncbi.nlm.nih.gov/gene/?term=RB11309 RB11310 RB11310 RB11310 6130268 6130516 + hypothetical protein gene gene6295 http://www.ncbi.nlm.nih.gov/gene/?term=RB11310 RB11311 RB11311 RB11311 6130297 6130482 + hypothetical protein gene gene6296 http://www.ncbi.nlm.nih.gov/gene/?term=RB11311 RB11312 RB11312 RB11312 6130479 6131645 + hypothetical protein gene gene6297 http://www.ncbi.nlm.nih.gov/gene/?term=RB11312 RB11313 RB11313 lexA lexA 6131652 6132548 - lexA repressor PMID: 8076591 best DB hits: BLAST: embl:CAB54047.1%3B (AJ245436) hypothetical protein%2C 21.8 kD%3B E%3D4e-27 swissprot:P50361%3B Y4HQ_RHISN HYPOTHETICAL 21.7 KD PROTEIN Y4HQ%3B E%3D5e-25 pir:S19103%3B hypothetical protein 3 - Agrobacterium rhizogenes%3B E%3D1e-19 COG: BS_lexA%3B COG1974 SOS-response transcriptional repressors%3B E%3D5e-06 PFAM: PF00325%3B Bacterial regulatory proteins%2C%3B E%3D4.2e-05 PF01325%3B Iron dependent repressor%2C N-te%3B E%3D0.00013 PF01047%3B MarR family%3B E%3D0.00032 gene gene6298 http://www.ncbi.nlm.nih.gov/gene/?term=RB11313 RB11314 RB11314 RB11314 6132840 6133748 - hypothetical protein gene gene6299 http://www.ncbi.nlm.nih.gov/gene/?term=RB11314 RB11316 RB11316 RB11316 6133854 6134246 + hypothetical protein gene gene6300 http://www.ncbi.nlm.nih.gov/gene/?term=RB11316 RB11318 RB11318 RB11318 6134344 6134589 - hypothetical protein gene gene6301 http://www.ncbi.nlm.nih.gov/gene/?term=RB11318 RB11319 RB11319 RB11319 6134657 6136312 - telomerase-1 best DB hits: BLAST: gb:AAC53043.1%3B (U86137) telomerase-1 [Mus musculus]%3B E%3D2e-08 gb:AAB51690.1%3B (U89282) telomerase component 1 [Rattus%3B E%3D3e-06 gb:AAC51107.1%3B (U86136) telomerase-associated protein TP-1 [Homo%3B E%3D6e-06 gene gene6302 http://www.ncbi.nlm.nih.gov/gene/?term=RB11319 RB1132 RB1132 RB1132 583247 583411 + hypothetical protein gene gene593 http://www.ncbi.nlm.nih.gov/gene/?term=RB1132 RB11320 RB11320 RB11320 6136339 6138507 - hypothetical protein gene gene6303 http://www.ncbi.nlm.nih.gov/gene/?term=RB11320 RB11321 RB11321 afsR-g afsR-g 6138517 6141957 - regulatory protein afsR PMID: 10517581 best DB hits: BLAST: ddbj:BAA83790.1%3B (AB025225) AfsR-g [Streptomyces griseus]%3B E%3D2e-05 embl:CAB72409.1%3B (AL138978) AfsR-like regulator%3B E%3D9e-04 swissprot:P25941%3B AFSR_STRCO REGULATORY PROTEIN AFSR -----%3B E%3D0.003 PFAM: PF00293%3B MutT-like domain%3B E%3D2.9e-06 PF00515%3B TPR Domain%3B E%3D0.28 gene gene6304 http://www.ncbi.nlm.nih.gov/gene/?term=RB11321 RB11323 RB11323 RB11323 6142000 6142431 - hypothetical protein gene gene6305 http://www.ncbi.nlm.nih.gov/gene/?term=RB11323 RB11325 RB11325 RB11325 6142392 6142535 - hypothetical protein gene gene6306 http://www.ncbi.nlm.nih.gov/gene/?term=RB11325 RB11328 RB11328 iuvY iuvY 6142717 6143733 + transcriptional activator protein ilvY PMID: 10588699 PMID: 9556617 best DB hits: BLAST: swissprot:P05827%3B ILVY_ECOLI TRANSCRIPTIONAL ACTIVATOR PROTEIN%3B E%3D1e-05 pir:S30671%3B ilvC activator - Escherichia coli%3B E%3D1e-05 gb:AAG58968.1%3B AE005608_9 (AE005608) positive regulator for ilvC%3B E%3D1e-05 COG: ilvY%3B COG0583 Transcriptional regulator%3B E%3D9e-07 PFAM: PF00126%3B Bacterial regulatory helix-turn-heli%3B E%3D6.1e-15 gene gene6307 http://www.ncbi.nlm.nih.gov/gene/?term=RB11328 RB11329 RB11329 RB11329 6143730 6144254 + hypothetical protein gene gene6308 http://www.ncbi.nlm.nih.gov/gene/?term=RB11329 RB1133 RB1133 RB1133 583438 583629 - hypothetical protein gene gene594 http://www.ncbi.nlm.nih.gov/gene/?term=RB1133 RB11331 RB11331 RB11331 6144227 6146656 + glutathione-regulated potassium-efflux system protein KefB PMID: 2046548 PMID: 8412700 best DB hits: BLAST: pir:T35377%3B probable membrane protein - Streptomyces coelicolor%3B E%3D4e-08 pir:S76244%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D6e-06 pir:S76018%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D3e-04 COG: sll0261%3B COG1226 Kef-type K+ transport systems%2C predicted%3B E%3D6e-07 DR2336%3B COG1226 Kef-type K+ transport systems%2C predicted NAD-binding%3B E%3D4e-04 MJ0138.1%3B COG1226 Kef-type K+ transport systems%2C predicted%3B E%3D7e-04 PFAM: PF01408%3B Oxidoreductase%2C NAD-bind%3B E%3D0.0037 PF02254%3B KTN NAD-binding domain%3B E%3D3.8e-13 gene gene6309 http://www.ncbi.nlm.nih.gov/gene/?term=RB11331 RB11334 RB11334 RB11334 6146708 6152407 + serine/threonine-protein kinase PMID: 3291115 best DB hits: BLAST: gb:AAF73695.1%3B (AE002226) serinethreonine-protein kinase%3B E%3D1e-35 pir:G71532%3B probable threoninetyrosine-specific protein kinase (EC%3B E%3D8e-34 pir:C72120%3B st protein kinase - Chlamydophila pneumoniae (strain%3B E%3D5e-33 COG: CT301_1%3B COG0515 Serine/threonine protein kinases%3B E%3D8e-35 PFAM: PF00069%3B Protein kinase domain%3B E%3D2.6e-37 PF00400%3B WD domain%2C G-beta repeat%3B E%3D0.013 PF00515%3B TPR Domain%3B E%3D0.0067 gene gene6310 http://www.ncbi.nlm.nih.gov/gene/?term=RB11334 RB11336 RB11336 RB11336 6152404 6152517 + hypothetical protein gene gene6311 http://www.ncbi.nlm.nih.gov/gene/?term=RB11336 RB11337 RB11337 RB11337 6152514 6153383 + transposase PMID: 8041625 best DB hits: BLAST: pir:S35005%3B probable transposase - Acetobacter xylinus insertion%3B E%3D9e-21 pir:S35004%3B probable transposase - Acetobacter xylinus insertion%3B E%3D4e-20 gb:AAD47597.1%3B AF144038_1 (AF144038) transposase%3B E%3D2e-18 COG: sll1716%3B COG3293 Predicted transposase%3B E%3D2e-13 PFAM: PF01511%3B Transposase%3B E%3D1.2e-09 PF01675%3B Transposase%3B E%3D2.5e-05 gene gene6312 http://www.ncbi.nlm.nih.gov/gene/?term=RB11337 RB11339 RB11339 RB11339 6153422 6153820 - hypothetical protein gene gene6313 http://www.ncbi.nlm.nih.gov/gene/?term=RB11339 RB1134 RB1134 ndhF ndhF 583645 585258 - NADH dehydrogenase best DB hits: BLAST: pir:G82182%3B probable NADH dehydrogenase VC1581 [imported] - Vibrio%3B E%3D2e-42 gb:AAF27211.1%3B AF111731_1 (AF111731) NADH dehydrogenase [Ceiba%3B E%3D2e-39 gb:AAF27226.1%3B AF111746_1 (AF111746) NADH dehydrogenase%3B E%3D3e-39 COG: VC1581%3B COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)%3B E%3D1e-43 BS_shaA_1%3B COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain%3B E%3D1e-25 PFAM: PF00662%3B NADH-Ubiquinone oxidoreductase%3B E%3D0.0058 PF00361%3B NADH-Ubiquinone/plastoquinone%3B E%3D5.6e-38 gene gene595 http://www.ncbi.nlm.nih.gov/gene/?term=RB1134 RB11340 RB11340 RB11340 6153930 6154139 + hypothetical protein gene gene6314 http://www.ncbi.nlm.nih.gov/gene/?term=RB11340 RB11341 RB11341 RB11341 6154153 6154359 - hypothetical protein gene gene6315 http://www.ncbi.nlm.nih.gov/gene/?term=RB11341 RB11342 RB11342 RB11342 6154311 6154655 - hypothetical protein gene gene6316 http://www.ncbi.nlm.nih.gov/gene/?term=RB11342 RB11343 RB11343 RB11343 6154696 6154977 + hypothetical protein gene gene6317 http://www.ncbi.nlm.nih.gov/gene/?term=RB11343 RB11345 RB11345 RB11345 6155013 6155240 - hypothetical protein gene gene6318 http://www.ncbi.nlm.nih.gov/gene/?term=RB11345 RB11348 RB11348 RB11348 6155237 6155692 - hypothetical protein gene gene6319 http://www.ncbi.nlm.nih.gov/gene/?term=RB11348 RB11352 RB11352 RB11352 6155689 6156546 - hypothetical protein best DB hits: BLAST: pir:A81289%3B hypothetical protein Cj1433c [imported] - Campylobacter%3B E%3D6e-07 pir:E71020%3B hypothetical protein PH1458 - Pyrococcus horikoshii%3B E%3D0.017 gb:AAD45550.1%3B U70376_15 (U70376) SpcY [Streptomyces netropsis]%3B E%3D0.061 COG: PH1458%3B COG1964 Predicted Fe-S oxidoreductases%3B E%3D0.002 gene gene6320 http://www.ncbi.nlm.nih.gov/gene/?term=RB11352 RB11354 RB11354 RB11354 6156470 6157495 - hypothetical protein gene gene6321 http://www.ncbi.nlm.nih.gov/gene/?term=RB11354 RB11356 RB11356 RB11356 6157486 6158199 - N-acetylgalactosaminyltransferase PMID: 7515051 best DB hits: BLAST: gb:AAA39802.1%3B (L30104) N-acetylgalactosaminyltransferase [Mus%3B E%3D2e-06 PFAM: PF00535%3B Glycosyl transferase%3B E%3D1.6e-06 gene gene6322 http://www.ncbi.nlm.nih.gov/gene/?term=RB11356 RB11360 RB11360 RB11360 6158192 6158557 - hypothetical protein gene gene6323 http://www.ncbi.nlm.nih.gov/gene/?term=RB11360 RB11363 RB11363 RB11363 6158661 6159398 - hypothetical protein gene gene6324 http://www.ncbi.nlm.nih.gov/gene/?term=RB11363 RB11366 RB11366 RB11366 6159395 6159943 - transcriptional regulator PMID: 3119860 best DB hits: BLAST: pir:F70829%3B probable transcriptional regulator Rv0474 - Mycobacterium%3B E%3D0.015 embl:CAC04034.1%3B (AL391406) DNA-binding protein%3B E%3D0.10 pir:S25724%3B hypothetical protein 1 (phbC 5' region) - Rhodococcus%3B E%3D0.12 COG: Rv0474%3B COG1396 Predicted transcriptional regulators%3B E%3D0.001 PFAM: PF01381%3B Helix-turn-helix%3B E%3D2.9e-13 gene gene6325 http://www.ncbi.nlm.nih.gov/gene/?term=RB11366 RB11367 RB11367 RB11367 6160080 6163904 - hypothetical protein best DB hits: PFAM: PF00515%3B TPR Domain%3B E%3D0.017 gene gene6326 http://www.ncbi.nlm.nih.gov/gene/?term=RB11367 RB1137 RB1137 RB1137 585204 585488 + hypothetical protein gene gene596 http://www.ncbi.nlm.nih.gov/gene/?term=RB1137 RB11370 RB11370 RB11370 6163939 6164295 - hypothetical protein best DB hits: BLAST: embl:CAC04034.1%3B (AL391406) DNA-binding protein%3B E%3D0.048 pir:S25724%3B hypothetical protein 1 (phbC 5' region) - Rhodococcus%3B E%3D0.048 ddbj:BAB07268.1%3B (AP001519) immunity repressor protein%3B E%3D0.057 COG: BH3549%3B COG1396 Predicted transcriptional regulators%3B E%3D0.006 PFAM: PF01381%3B Helix-turn-helix%3B E%3D3.5e-10 gene gene6327 http://www.ncbi.nlm.nih.gov/gene/?term=RB11370 RB11371 RB11371 hsdR hsdR 6164292 6167747 - hypothetical protein PMID: 8921897 best DB hits: BLAST: gb:AAK03625.1%3B (AE006191) HsdR [Pasteurella multocida]%3B E%3D9e-56 pir:C81302%3B probable type I site-specific deoxyribonuclease (EC%3B E%3D1e-54 pir:JC5216%3B type I site-specific deoxyribonuclease (EC 3.1.21.3) Hsd%3B E%3D1e-52 COG: Cj1549c%3B COG0610 Restriction enzymes type I helicase subunits and%3B E%3D1e-55 PFAM: PF01911%3B Ribosomal LX protein%3B E%3D0.84 gene gene6328 http://www.ncbi.nlm.nih.gov/gene/?term=RB11371 RB11373 RB11373 RB11373 6167856 6168689 - hypothetical protein gene gene6329 http://www.ncbi.nlm.nih.gov/gene/?term=RB11373 RB11374 RB11374 yma yma 6168686 6169522 - hypothetical protein best DB hits: BLAST: gb:AAB91575.2%3B (AF242881) yma [Agrobacterium tumefaciens]%3B E%3D2e-32 gene gene6330 http://www.ncbi.nlm.nih.gov/gene/?term=RB11374 RB11377 RB11377 hsdS hsdS 6169519 6170754 - polypeptide HsdS PMID: 2585490 PMID: 9837717 best DB hits: BLAST: gb:AAC37110.1%3B (L77118) M. jannaschii predicted coding region%3B E%3D3e-12 swissprot:Q58615%3B YC18_METJA HYPOTHETICAL PROTEIN MJ1218 -----%3B E%3D3e-12 embl:CAA35604.1%3B (X17591) HsdS polypeptide%2C part of CfrA family%3B E%3D1e-06 COG: MJECL41%3B COG0732 Restriction endonuclease S subunits%3B E%3D3e-13 PFAM: PF01420%3B Type I restriction modification%3B E%3D0.00019 gene gene6331 http://www.ncbi.nlm.nih.gov/gene/?term=RB11377 RB11379 RB11379 RB11379 6170751 6172913 - type I restriction-modification system DNA methylase PMID: 8921897 best DB hits: BLAST: pir:D82522%3B type I restriction-modification system DNA methylase%3B E%3D4e-58 gb:AAC37111.1%3B (L77118) type I restriction enyzme ECOR1243 I M%3B E%3D4e-56 embl:CAA68057.1%3B (X99719) Sty SBLI [Salmonella enterica]%3B E%3D1e-54 COG: XF2742%3B COG0286 Type I restriction-modification system%3B E%3D4e-59 PFAM: PF02506%3B Type I restriction modification s%3B E%3D1e-34 PF02384%3B N-6 DNA Methylase%3B E%3D4.3e-10 gene gene6332 http://www.ncbi.nlm.nih.gov/gene/?term=RB11379 RB1138 RB1138 RB1138 585492 585959 + hypothetical protein PMID: 8843436 best DB hits: BLAST: embl:CAC14481.1%3B (AL446003) hypothetical protein [Streptomyces%3B E%3D9e-15 pir:E64456%3B hypothetical protein MJ1254 - Methanococcus jannaschii%3B E%3D0.005 embl:CAC22761.1%3B (AL512944) hypothetical protein SC8D11.44c%3B E%3D0.035 PFAM: PF01037%3B AsnC family%3B E%3D0.66 gene gene597 http://www.ncbi.nlm.nih.gov/gene/?term=RB1138 RB11381 RB11381 RB11381 6173105 6174142 + hypothetical protein gene gene6333 http://www.ncbi.nlm.nih.gov/gene/?term=RB11381 RB11383 RB11383 RB11383 6174244 6175965 + hypothetical protein best DB hits: PFAM: PF00140%3B Sigma-70 factor%3B E%3D0.0029 gene gene6334 http://www.ncbi.nlm.nih.gov/gene/?term=RB11383 RB11386 RB11386 RB11386 6175940 6176116 - hypothetical protein gene gene6335 http://www.ncbi.nlm.nih.gov/gene/?term=RB11386 RB11387 RB11387 RB11387 6176099 6176473 + hypothetical protein PMID: 10567266 best DB hits: BLAST: pir:D75324%3B hypothetical protein - Deinococcus radiodurans (strain%3B E%3D6e-15 pir:C83546%3B hypothetical protein PA0806 [imported] - Pseudomonas%3B E%3D2e-11 embl:CAB92195.1%3B (AL356592) membrane protein.%3B E%3D0.005 gene gene6336 http://www.ncbi.nlm.nih.gov/gene/?term=RB11387 RB11388 RB11388 RB11388 6176533 6176658 + hypothetical protein gene gene6337 http://www.ncbi.nlm.nih.gov/gene/?term=RB11388 RB11389 RB11389 RB11389 6176641 6176823 - hypothetical protein gene gene6338 http://www.ncbi.nlm.nih.gov/gene/?term=RB11389 RB11390 RB11390 RB11390 6176780 6176995 + hypothetical protein gene gene6339 http://www.ncbi.nlm.nih.gov/gene/?term=RB11390 RB11391 RB11391 RB11391 6177102 6177239 + hypothetical protein gene gene6340 http://www.ncbi.nlm.nih.gov/gene/?term=RB11391 RB11392 RB11392 RB11392 6177208 6177654 + hypothetical protein gene gene6341 http://www.ncbi.nlm.nih.gov/gene/?term=RB11392 RB11393 RB11393 RB11393 6177651 6177926 + hypothetical protein gene gene6342 http://www.ncbi.nlm.nih.gov/gene/?term=RB11393 RB11395 RB11395 RB11395 6178039 6178434 + hypothetical protein PMID: 9384377 best DB hits: BLAST: pir:G69987%3B hypothetical protein ytaB - Bacillus subtilis -----%3B E%3D2e-08 gb:AAF01195.1%3B AF179401_4 (AF179401) TspO [Sinorhizobium meliloti]%3B E%3D8e-08 pir:A57438%3B tryptophan-rich sensory protein [similarity] -%3B E%3D9e-05 PFAM: PF01061%3B ABC-2 type transporter%3B E%3D0.13 gene gene6343 http://www.ncbi.nlm.nih.gov/gene/?term=RB11395 RB11396 RB11396 RB11396 6178445 6178555 + hypothetical protein gene gene6344 http://www.ncbi.nlm.nih.gov/gene/?term=RB11396 RB11397 RB11397 RB11397 6178540 6179163 + hypothetical protein PMID: 9371463 best DB hits: BLAST: pir:B69020%3B hypothetical protein MTH115 - Methanobacterium%3B E%3D2e-17 gb:AAD32774.1%3B AC007661_11 (AC007661) unknown protein [Arabidopsis%3B E%3D4e-09 ddbj:BAA96146.1%3B (AP002092) ESTs%3B E%3D3e-07 gene gene6345 http://www.ncbi.nlm.nih.gov/gene/?term=RB11397 RB11399 RB11399 RB11399 6179167 6179565 + hypothetical protein PMID: 8905231 best DB hits: BLAST: pir:S75732%3B hypothetical protein slr0919 - Synechocystis sp. (strain%3B E%3D1e-14 ddbj:BAB10296.1%3B (AB026650) gene_id:MPF21.11~~pir S75732~~similar%3B E%3D3e-13 pir:H82154%3B conserved hypothetical protein VC1812 [imported] -%3B E%3D6e-07 COG: slr0919%3B COG3011 Uncharacterized BCR%3B E%3D1e-15 gene gene6346 http://www.ncbi.nlm.nih.gov/gene/?term=RB11399 RB1140 RB1140 RB1140 586045 586680 - response regulator PMID: 7699720 best DB hits: BLAST: embl:CAA03999.1%3B (AJ000330) Styrene response regulator%3B E%3D3e-15 gb:AAC23717.1%3B (AF031161) transcriptional activator [Pseudomonas%3B E%3D3e-15 gb:AAG09418.1%3B AF180147_10 (AF180147) response regulator TobT%3B E%3D5e-15 COG: PA4196%3B COG2197 Response regulators consisting of a CheY-like%3B E%3D3e-15 ygeK%3B COG2771 DNA-binding HTH domains%3B E%3D6e-07 DR0987%3B COG2197 Response regulators consisting of a CheY-like%3B E%3D1e-06 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D2.4e-10 PF00196%3B Bacterial regulatory proteins%2C l%3B E%3D6.2e-20 gene gene598 http://www.ncbi.nlm.nih.gov/gene/?term=RB1140 RB11401 RB11401 RB11401 6179585 6182800 - helicase PMID: 97000351 best DB hits: BLAST: embl:CAB65593.1%3B (AL136058) helicase [Streptomyces%3B E%3D0.0 pir:H82276%3B helicase-related protein VC0812 [imported] - Vibrio%3B E%3D1e-64 gb:AAB64767.1%3B (U32517) Ydr332wp [Saccharomyces cerevisiae]%3B E%3D4e-21 COG: VC0812_2%3B COG1061 DNA or RNA helicases of superfamily II%3B E%3D1e-57 hsdR%3B COG0610 Restriction enzymes type I helicase subunits and%3B E%3D9e-06 PH0210%3B COG1061 DNA or RNA helicases of superfamily II%3B E%3D7e-05 PFAM: PF00270%3B DEAD/DEAH box helicase%3B E%3D0.00054 PF00271%3B Helicase conserved C-terminal doma%3B E%3D7.7e-14 gene gene6347 http://www.ncbi.nlm.nih.gov/gene/?term=RB11401 RB11403 RB11403 RB11403 6182791 6183744 - hypothetical protein best DB hits: PFAM: PF01549%3B Domain of unknown function DUF18%3B E%3D0.1 gene gene6348 http://www.ncbi.nlm.nih.gov/gene/?term=RB11403 RB11405 RB11405 RB11405 6183795 6184535 - hypothetical protein best DB hits: BLAST: embl:CAA07132.1%3B (AJ006589) gp7 [Bacteriophage phi-C31]%3B E%3D0.66 gene gene6349 http://www.ncbi.nlm.nih.gov/gene/?term=RB11405 RB11407 RB11407 hsdR hsdR 6184457 6186298 + type I restriction enzyme EcoAI R protein PMID: 8412658 best DB hits: BLAST: swissprot:Q07736%3B T1RA_ECOLI TYPE I RESTRICTION ENZYME ECOAI R%3B E%3D3e-33 gb:AAG59531.1%3B AE005666_3 (AE005666) restriction%3B E%3D3e-33 swissprot:P08956%3B T1RK_ECOLI TYPE I RESTRICTION ENZYME ECOKI R%3B E%3D4e-29 COG: hsdR%3B COG0610 Restriction enzymes type I helicase subunits and%3B E%3D4e-30 YDR332w%3B COG1061 DNA or RNA helicases of superfamily II%3B E%3D2e-09 MJECL40%3B COG0610 Restriction enzymes type I helicase subunits and%3B E%3D0.001 PFAM: PF00270%3B DEAD/DEAH box helicase%3B E%3D0.14 PF00271%3B Helicase conserved C-terminal doma%3B E%3D0.6 gene gene6350 http://www.ncbi.nlm.nih.gov/gene/?term=RB11407 RB11408 RB11408 RB11408 6186295 6186735 + hypothetical protein gene gene6351 http://www.ncbi.nlm.nih.gov/gene/?term=RB11408 RB11411 RB11411 hsdM hsdM 6186739 6187794 + type I restriction enzyme M protein PMID: 8412658 best DB hits: BLAST: swissprot:Q47282%3B T1ME_ECOLI TYPE I RESTRICTION ENZYME ECOEI M%3B E%3D4e-13 gb:AAG59530.1%3B AE005666_2 (AE005666) restriction%3B E%3D1e-12 pir:A47200%3B EcoA system protein M - Escherichia coli ----- gb:%3B E%3D2e-12 COG: Rv2756c%3B COG0286 Type I restriction-modification system%3B E%3D4e-10 PFAM: PF02506%3B Type I restriction modification s%3B E%3D3.3e-06 gene gene6352 http://www.ncbi.nlm.nih.gov/gene/?term=RB11411 RB11412 RB11412 hsdS hsdS 6187922 6189079 + Type I restriction enzyme EcoBI specificity protein PMID: 6304321 best DB hits: BLAST: embl:CAA10700.1%3B (AJ132566) HsdS protein [Escherichia coli]%3B E%3D5e-13 swissprot:P06990%3B T1SB_ECOLI TYPE I RESTRICTION ENZYME ECOBI%3B E%3D2e-10 gb:AAG18734.1%3B (AE004978) type I restriction modification enzyme%2C%3B E%3D4e-09 COG: VNG0107G%3B COG0732 Restriction endonuclease S subunits%3B E%3D4e-10 PFAM: PF01420%3B Type I restriction modification D%3B E%3D3.3e-06 gene gene6353 http://www.ncbi.nlm.nih.gov/gene/?term=RB11412 RB11415 RB11415 RB11415 6189076 6190896 + hypothetical protein PMID: 4515613 PMID: 354508 PMID: 6221115 best DB hits: BLAST: gb:AAA96561.1%3B (J02459) ea59 (525) [bacteriophage lambda]%3B E%3D5e-05 pir:S49559%3B phage Hau3 resistance protein - Streptomyces lividans%3B E%3D2e-04 gb:AAK02366.1%3B (AE006063) unknown [Pasteurella multocida]%3B E%3D0.014 PFAM: PF02463%3B SMC domain N terminal domain%3B E%3D0.039 gene gene6354 http://www.ncbi.nlm.nih.gov/gene/?term=RB11415 RB11416 RB11416 RB11416 6190901 6191992 + hypothetical protein PMID: 12003951 best DB hits: BLAST: gb:AAK02367.1%3B (AE006063) unknown [Pasteurella multocida]%3B E%3D0.049 gb:AAA96560.1%3B (J02459) ea31 (296) [bacteriophage lambda]%3B E%3D0.19 gene gene6355 http://www.ncbi.nlm.nih.gov/gene/?term=RB11416 RB11418 RB11418 arr1 arr1 6192077 6192388 - phosrestin PMID: 7929436 best DB hits: BLAST: swissprot:P51486%3B ARR1_CALVI PHOSRESTIN II (ARRESTIN A) (ARRESTIN%3B E%3D0.15 swissprot:P15372%3B ARRA_DROME PHOSRESTIN II (ARRESTIN A) (ARRESTIN%3B E%3D0.89 gene gene6356 http://www.ncbi.nlm.nih.gov/gene/?term=RB11418 RB11419 RB11419 nfi nfi 6192385 6192909 - endonuclease V PMID: 20365717 best DB hits: BLAST: pir:E75309%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D2e-34 pir:T35251%3B probable endonuclease - Streptomyces coelicolor -----%3B E%3D3e-04 pir:A82625%3B endonuclease V (deoxyinosine 3'endonuclease) XF1892%3B E%3D0.005 COG: DR2162%3B COG1515 Deoxyinosine 3'endonuclease (endonuclease V)%3B E%3D2e-35 gene gene6357 http://www.ncbi.nlm.nih.gov/gene/?term=RB11419 RB1142 RB1142 RB1142 586652 587080 - signal peptide gene gene599 http://www.ncbi.nlm.nih.gov/gene/?term=RB1142 RB11420 RB11420 RB11420 6192938 6193786 - hypothetical protein gene gene6358 http://www.ncbi.nlm.nih.gov/gene/?term=RB11420 RB11421 RB11421 rsr rsr 6193880 6195538 - 60-kDa SS-A/Ro ribonucleoprotein PMID: 10567266 PMID: 10766734 best DB hits: BLAST: swissprot:Q9RUW8%3B RO60_DEIRA 60-KDA SS-ARO RIBONUCLEOPROTEIN%3B E%3D2e-17 gb:AAC53142.1%3B (U66843) Mus musculus 60kDa SS-ARo%3B E%3D1e-11 pir:T36919%3B hypothetical protein SCI7.23c - Streptomyces coelicolor%3B E%3D1e-11 gene gene6359 http://www.ncbi.nlm.nih.gov/gene/?term=RB11421 RB11424 RB11424 RB11424 6195656 6196132 + hypothetical protein gene gene6360 http://www.ncbi.nlm.nih.gov/gene/?term=RB11424 RB11427 RB11427 RB11427 6196136 6196417 + hypothetical protein gene gene6361 http://www.ncbi.nlm.nih.gov/gene/?term=RB11427 RB11429 RB11429 RB11429 6196478 6196591 + hypothetical protein gene gene6362 http://www.ncbi.nlm.nih.gov/gene/?term=RB11429 RB1143 RB1143 RB1143 587083 587517 + hypothetical protein gene gene600 http://www.ncbi.nlm.nih.gov/gene/?term=RB1143 RB11431 RB11431 RB11431 6196640 6196948 - hypothetical protein gene gene6363 http://www.ncbi.nlm.nih.gov/gene/?term=RB11431 RB11432 RB11432 RB11432 6196988 6197188 - hypothetical protein gene gene6364 http://www.ncbi.nlm.nih.gov/gene/?term=RB11432 RB11434 RB11434 RB11434 6197233 6197442 - hypothetical protein gene gene6365 http://www.ncbi.nlm.nih.gov/gene/?term=RB11434 RB11436 RB11436 RB11436 6197429 6197707 - hypothetical protein gene gene6366 http://www.ncbi.nlm.nih.gov/gene/?term=RB11436 RB11437 RB11437 RB11437 6197615 6197685 - tRNA-OTHER Pseudo%2C tRNAscan-SE-score 33.73%25 tRNA gene6367 http://www.ncbi.nlm.nih.gov/gene/?term=RB11437 RB11438 RB11438 RB11438 6197762 6197926 - Zn-binding protein best DB hits: BLAST: swissprot:P06979%3B YECA_ECOLI HYPOTHETICAL 25.0 KD PROTEIN IN%3B E%3D5e-05 gb:AAG56897.1%3B AE005412_7 (AE005412) orf%2C hypothetical protein%3B E%3D5e-05 pir:G82437%3B SecA-related protein VCA0628 [imported] - Vibrio%3B E%3D1e-04 COG: yecA%3B COG3318 Predicted metal-binding protein related to the%3B E%3D4e-06 ychJ%3B COG3012 Uncharacterized BCR%3B E%3D4e-04 secA%3B COG0653 Preprotein translocase subunit SecA (ATPase%2C RNA%3B E%3D8e-04 PFAM: PF02810%3B SEC-C motif%3B E%3D2.2e-06 gene gene6368 http://www.ncbi.nlm.nih.gov/gene/?term=RB11438 RB11439 RB11439 RB11439 6197993 6198274 + hypothetical protein gene gene6369 http://www.ncbi.nlm.nih.gov/gene/?term=RB11439 RB1144 RB1144 RB1144 587487 587672 - hypothetical protein gene gene601 http://www.ncbi.nlm.nih.gov/gene/?term=RB1144 RB11446 RB11446 RB11446 6199492 6199833 + hypothetical protein gene gene6380 http://www.ncbi.nlm.nih.gov/gene/?term=RB11446 RB1145 RB1145 RB1145 587652 588896 + hypothetical protein PMID: 11823852 best DB hits: BLAST: pir:F83108%3B hypothetical protein PA4303 [imported] - Pseudomonas%3B E%3D0.26 gb:AAB90541.1%3B (AE001056) cell division inhibitor (minD-1)%3B E%3D0.73 PFAM: PF00398%3B Ribosomal RNA adenine dimethylases%3B E%3D0.84 gene gene602 http://www.ncbi.nlm.nih.gov/gene/?term=RB1145 RB11450 RB11450 RB11450 6200046 6200228 + hypothetical protein gene gene6383 http://www.ncbi.nlm.nih.gov/gene/?term=RB11450 RB11452 RB11452 RB11452 6200405 6200599 - hypothetical protein gene gene6385 http://www.ncbi.nlm.nih.gov/gene/?term=RB11452 RB1146 RB1146 RB1146 588871 588984 - hypothetical protein gene gene603 http://www.ncbi.nlm.nih.gov/gene/?term=RB1146 RB11461 RB11461 RB11461 6202404 6202862 - hypothetical protein gene gene6396 http://www.ncbi.nlm.nih.gov/gene/?term=RB11461 RB11462 RB11462 RB11462 6202949 6203338 + hypothetical protein best DB hits: BLAST: pir:F75091%3B hypothetical protein PAB1624 - Pyrococcus abyssi (strain%3B E%3D1e-12 pir:F71051%3B hypothetical protein PH1109 - Pyrococcus horikoshii%3B E%3D7e-12 pir:H72254%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D2e-11 COG: PAB1624%3B COG1832 Uncharacterized ACR%3B E%3D1e-13 AF0932%3B COG1042 Acyl-CoA synthetase (NDP forming)%3B E%3D2e-11 yccU%3B COG1832 Uncharacterized ACR%3B E%3D3e-09 PFAM: PF02629%3B Uncharacterized ACR%2C COG1832%3B E%3D9.2e-17 gene gene6397 http://www.ncbi.nlm.nih.gov/gene/?term=RB11462 RB11463 RB11463 RB11463 6203375 6204886 - hypothetical protein best DB hits: PFAM: PF01011%3B PQQ enzyme repeat%3B E%3D0.39 gene gene6398 http://www.ncbi.nlm.nih.gov/gene/?term=RB11463 RB11468 RB11468 RB11468 6204918 6205637 - hypothetical protein gene gene6399 http://www.ncbi.nlm.nih.gov/gene/?term=RB11468 RB11469 RB11469 RB11469 6205661 6205771 + hypothetical protein gene gene6400 http://www.ncbi.nlm.nih.gov/gene/?term=RB11469 RB1147 RB1147 RB1147 589001 590377 + secretory protein kinase best DB hits: BLAST: gb:AAB36933.1%3B (U77780) secretory protein kinase [Chlorobium%3B E%3D1e-105 gb:AAF40195.1%3B AF229646_7 (AF229646) CpaF [Caulobacter crescentus]%3B E%3D2e-88 gb:AAG33866.1%3B AF317389_1 (AF317389) type IV NTPase%3B E%3D1e-86 COG: PA4302%3B COG0630 Predicted ATPases involved in pili and flagella%3B E%3D2e-79 PFAM: PF00004%3B ATPase associated with%3B E%3D0.16 PF01443%3B Viral (Superfamily 1) RNA hel%3B E%3D0.17 PF02223%3B Thymidylate kinase%3B E%3D0.69 gene gene604 http://www.ncbi.nlm.nih.gov/gene/?term=RB1147 RB11470 RB11470 RB11470 6205748 6207751 - phospholipid-binding protein best DB hits: BLAST: swissprot:O26373%3B Y273_METTH HYPOTHETICAL PROTEIN MTH273 -----%3B E%3D2e-10 swissprot:O67293%3B YC50_AQUAE HYPOTHETICAL PROTEIN AQ_1250 -----%3B E%3D3e-08 swissprot:O58984%3B YC69_PYRHO HYPOTHETICAL PROTEIN PH1269 -----%3B E%3D7e-06 COG: MTH273%3B COG1881 Phospholipid-binding protein%3B E%3D2e-11 gene gene6401 http://www.ncbi.nlm.nih.gov/gene/?term=RB11470 RB11471 RB11471 RB11471 6207748 6208881 - hypothetical protein best DB hits: BLAST: pir:T05344%3B hypothetical protein F8B4.40 - Arabidopsis thaliana%3B E%3D0.79 gene gene6402 http://www.ncbi.nlm.nih.gov/gene/?term=RB11471 RB11473 RB11473 RB11473 6208842 6209513 - hypothetical protein best DB hits: PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D2.9e-07 gene gene6403 http://www.ncbi.nlm.nih.gov/gene/?term=RB11473 RB11475 RB11475 RB11475 6209468 6209641 + hypothetical protein gene gene6404 http://www.ncbi.nlm.nih.gov/gene/?term=RB11475 RB11476 RB11476 RB11476 6209611 6210201 + acetyltransferase PMID: 7610040 best DB hits: BLAST: swissprot:P39368%3B YJHQ_ECOLI HYPOTHETICAL 20.0 KDA PROTEIN IN%3B E%3D6e-21 pir:B82297%3B probable acetyltransferase VC0655 [imported] - Vibrio%3B E%3D7e-13 gb:AAK04154.1%3B AE006244_3 (AE006244) HYPOTHETICAL PROTEIN%3B E%3D6e-10 COG: yjhQ%3B COG3153 Predicted acetyltransferase%3B E%3D6e-22 PFAM: PF00583%3B Acetyltransferase (GNAT) family%3B E%3D2.2e-10 gene gene6405 http://www.ncbi.nlm.nih.gov/gene/?term=RB11476 RB11478 RB11478 RB11478 6210389 6210799 + hypothetical protein gene gene6406 http://www.ncbi.nlm.nih.gov/gene/?term=RB11478 RB1148 RB1148 tadB tadB 590374 591318 + hypothetical protein PMID: 10880436 best DB hits: BLAST: gb:AAF40196.1%3B AF229646_8 (AF229646) TadB [Caulobacter crescentus]%3B E%3D9e-20 pir:D83108%3B hypothetical protein PA4301 [imported] - Pseudomonas%3B E%3D6e-11 embl:CAB92603.1%3B (AL356813) integral membrane protein%3B E%3D7e-06 COG: PA4301%3B COG2064 Predicted membrane protein%3B E%3D5e-12 gene gene605 http://www.ncbi.nlm.nih.gov/gene/?term=RB1148 RB11480 RB11480 RB11480 6210741 6211241 + MarR family transcriptional regulator PMID: 8521301 best DB hits: BLAST: pir:C82396%3B transcriptional regulator MarR family VCA0955 [imported] -%3B E%3D2e-04 gb:AAD05186.1%3B (AF110185) unknown [Burkholderia pseudomallei]%3B E%3D4e-04 pir:F82675%3B transcriptional regulator MarREmrR family XF1490%3B E%3D7e-04 COG: VCA0955%3B COG1846 Transcriptional regulators%3B E%3D2e-05 PFAM: PF01047%3B MarR family%3B E%3D7.4e-09 gene gene6407 http://www.ncbi.nlm.nih.gov/gene/?term=RB11480 RB11482 RB11482 RB11482 6211246 6212610 + alkyl sulfatase or beta-lactamase PMID: 92267380 PMID: 96067120 best DB hits: BLAST: pir:JC1118%3B alkyl sulfatase (EC 3.1.6.-) - Pseudomonas sp -----%3B E%3D1e-60 pir:G83552%3B probable beta-lactamase PA0740 [imported] - Pseudomonas%3B E%3D2e-47 embl:CAA99186.1%3B (Z74906) ORF YOL164w [Saccharomyces cerevisiae]%3B E%3D2e-42 COG: PA0740%3B COG2015 Alkyl sulfatase and related hydrolases%3B E%3D2e-48 aq_1798%3B COG0491 Zn-dependent hydrolases%2C including glyoxylases%3B E%3D4e-10 PFAM: PF00753%3B Metallo-beta-lactamase superfamil%3B E%3D2.1e-27 PF02151%3B UvrB/uvrC motif%3B E%3D0.2 PF01656%3B Cobyrinic acid a%2Cc-diamide syntha%3B E%3D0.44 gene gene6408 http://www.ncbi.nlm.nih.gov/gene/?term=RB11482 RB11484 RB11484 RB11484 6212611 6212742 - hypothetical protein gene gene6409 http://www.ncbi.nlm.nih.gov/gene/?term=RB11484 RB11485 RB11485 RB11485 6212721 6213389 + hypothetical protein gene gene6410 http://www.ncbi.nlm.nih.gov/gene/?term=RB11485 RB11487 RB11487 RB11487 6213464 6213889 + hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:H83235%3B hypothetical protein PA3281 [imported] - Pseudomonas%3B E%3D0.002 gb:AAK02297.1%3B (AE006055) unknown [Pasteurella multocida]%3B E%3D0.005 pir:E83286%3B conserved hypothetical protein PA2864 [imported] -%3B E%3D0.062 COG: PA2864%3B COG2259 Predicted membrane protein%3B E%3D0.006 gene gene6411 http://www.ncbi.nlm.nih.gov/gene/?term=RB11487 RB11488 RB11488 RB11488 6213893 6214690 + short chain dehydrogenase member of a large family of NAD or NADP-dependent oxidoreductases%3B paralogs occur in many bacteria gene gene6412 http://www.ncbi.nlm.nih.gov/gene/?term=RB11488 RB11489 RB11489 RB11489 6214769 6215521 + vulnibactin utilization protein VIUB PMID: 8698519 PMID: 97000351 best DB hits: BLAST: embl:CAB59476.1%3B (AL132648) hypothetical protein SCI41.06%3B E%3D1e-31 swissprot:Q56743%3B VIUB_VIBVU VULNIBACTIN UTILIZATION PROTEIN VIUB%3B E%3D5e-31 swissprot:Q56646%3B VIUB_VIBCH VIBRIOBACTIN UTILIZATION PROTEIN VIUB%3B E%3D9e-30 COG: VC2210%3B COG2375 Siderophore-interacting protein%3B E%3D9e-31 gene gene6413 http://www.ncbi.nlm.nih.gov/gene/?term=RB11489 RB1149 RB1149 RB1149 591315 592256 + hypothetical protein PMID: 8843436 best DB hits: BLAST: pir:C83108%3B hypothetical protein PA4300 [imported] - Pseudomonas%3B E%3D1e-08 embl:CAB92604.1%3B (AL356813) integral membrane protein%3B E%3D3e-06 gb:AAK02931.1%3B (AE006123) TadC [Pasteurella multocida]%3B E%3D2e-04 COG: PAB1458%3B COG2064 Predicted membrane protein%3B E%3D6e-05 gene gene606 http://www.ncbi.nlm.nih.gov/gene/?term=RB1149 RB11490 RB11490 RB11490 6215558 6216103 + transmembrane protein PMID: 11248100 best DB hits: BLAST: gb:AAK04020.1%3B (AE006230) unknown [Pasteurella multocida]%3B E%3D0.010 gene gene6414 http://www.ncbi.nlm.nih.gov/gene/?term=RB11490 RB11492 RB11492 RB11492 6216103 6216390 + hypothetical protein gene gene6415 http://www.ncbi.nlm.nih.gov/gene/?term=RB11492 RB11493 RB11493 RB11493 6216432 6216587 - hypothetical protein gene gene6416 http://www.ncbi.nlm.nih.gov/gene/?term=RB11493 RB11494 RB11494 RB11494 6216550 6217431 + hypothetical protein PMID: 10086841 PMID: 10086842 PMID: 10192928 best DB hits: BLAST: ddbj:BAB04024.1%3B (AP001508) BH0305~~unknown conserved protein in%3B E%3D4e-31 gb:AAG59409.1%3B AE005653_10 (AE005653) oxidoreductase%3B E%3D2e-23 swissprot:P39315%3B YTFG_ECOLI HYPOTHETICAL 29.7 KD PROTEIN IN%3B E%3D4e-23 COG: BH0305%3B COG0702 Predicted nucleoside-diphosphate-sugar epimerases%3B E%3D3e-32 PFAM: PF01073%3B 3-beta hydroxysteroid dehydrogenase%3B E%3D0.023 gene gene6417 http://www.ncbi.nlm.nih.gov/gene/?term=RB11494 RB11496 RB11496 RB11496 6217440 6217643 + hypothetical protein gene gene6418 http://www.ncbi.nlm.nih.gov/gene/?term=RB11496 RB11497 RB11497 RB11497 6217712 6218449 + hypothetical protein PMID: 8905231 best DB hits: BLAST: pir:S74850%3B hypothetical protein slr0865 - Synechocystis sp. (strain%3B E%3D4e-24 pir:F70793%3B hypothetical protein Rv3701c - Mycobacterium%3B E%3D5e-23 embl:CAC02633.1%3B (AL390114) possible hypothetical 35.4 Kd protein%3B E%3D3e-22 gene gene6419 http://www.ncbi.nlm.nih.gov/gene/?term=RB11497 RB11498 RB11498 RB11498 6218361 6219701 + hypothetical protein PMID: 97000351 best DB hits: BLAST: embl:CAB62702.1%3B (AL133422) hypothetical protein SCM1.44.%3B E%3D4e-37 pir:H70793%3B hypothetical protein Rv3703c - Mycobacterium%3B E%3D3e-24 pir:S74705%3B hypothetical protein slr1303 - Synechocystis sp. (strain%3B E%3D3e-21 COG: Rv3703c%3B COG1262 Uncharacterized BCR%3B E%3D3e-25 gene gene6420 http://www.ncbi.nlm.nih.gov/gene/?term=RB11498 RB115 RB115 RB115 50213 51139 - signal peptide best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene63 http://www.ncbi.nlm.nih.gov/gene/?term=RB115 RB11502 RB11502 RB11502 6219763 6221100 + alkyl sulfatase or beta-lactamase PMID: 92267380 best DB hits: BLAST: pir:JC1118%3B alkyl sulfatase (EC 3.1.6.-) - Pseudomonas sp -----%3B E%3D3e-54 gb:AAG59281.1%3B AE005641_6 (AE005641) orf%2C hypothetical protein%3B E%3D4e-41 gb:AAC43177.1%3B (U00006) matches PS00743: Beta-lactamases class B%3B E%3D8e-41 COG: yjcS%3B COG2015 Alkyl sulfatase and related hydrolases%3B E%3D8e-42 aq_974%3B COG0491 Zn-dependent hydrolases%2C including glyoxylases%3B E%3D0.002 PFAM: PF00753%3B Metallo-beta-lactamase superf%3B E%3D1.2e-29 gene gene6421 http://www.ncbi.nlm.nih.gov/gene/?term=RB11502 RB11504 RB11504 RB11504 6221067 6221285 - hypothetical protein gene gene6422 http://www.ncbi.nlm.nih.gov/gene/?term=RB11504 RB11505 RB11505 RB11505 6221230 6221829 - hypothetical protein PMID: 8905231 best DB hits: BLAST: pir:S76701%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D1e-11 pir:T04873%3B hypothetical protein F28A21.220 - Arabidopsis thaliana%3B E%3D5e-10 gb:AAD34060.1%3B AF151823_1 (AF151823) CGI-65 protein [Homo sapiens]%3B E%3D1e-07 COG: sll0096%3B COG0702 Predicted nucleoside-diphosphate-sugar epimerases%3B E%3D1e-12 gene gene6423 http://www.ncbi.nlm.nih.gov/gene/?term=RB11505 RB11506 RB11506 RB11506 6221923 6222135 - 4-oxalocrotonate tautomerase PMID: 1732207 PMID: 8547259 best DB hits: BLAST: swissprot:P45418%3B YKDK_ERWCH HYPOTHETICAL 8.1 KD PROTEIN IN KDGK%3B E%3D3e-06 pir:H81078%3B 4-oxalocrotonate tautomerase%2C probable NMB1474%3B E%3D8e-06 gb:AAG42543.1%3B (AY013584) isomerase [Sinorhizobium%3B E%3D2e-04 COG: NMB1474%3B COG1942 Uncharacterized protein%2C 4-oxalocrotonate%3B E%3D8e-07 PFAM: PF01361%3B Tautomerase enzyme%3B E%3D1.2e-06 gene gene6424 http://www.ncbi.nlm.nih.gov/gene/?term=RB11506 RB11509 RB11509 RB11509 6222153 6222488 - hypothetical protein gene gene6425 http://www.ncbi.nlm.nih.gov/gene/?term=RB11509 RB11510 RB11510 RB11510 6222485 6223285 - chaperonin involved in protein secretion (CsaA protein) PMID: 1435734 best DB hits: BLAST: ddbj:BAB05504.1%3B (AP001513) chaperonin involved in protein%3B E%3D5e-21 swissprot:P37584%3B CSAA_BACSU CSAA PROTEIN ----- pir: E69607%3B E%3D1e-20 pir:A83243%3B CsaA protein PA3221 [imported] - Pseudomonas aeruginosa%3B E%3D1e-20 COG: BH1785%3B COG0073 EMAP domain%3B E%3D5e-22 PFAM: PF01588%3B tRNA binding domain%3B E%3D2.3e-13 gene gene6426 http://www.ncbi.nlm.nih.gov/gene/?term=RB11510 RB11512 RB11512 RB11512 6223454 6224287 + phenazine biosynthesis protein PhzF PMID: 8586283 best DB hits: BLAST: ddbj:BAB04002.1%3B (AP001508) BH0283~~unknown conserved protein%3B E%3D5e-62 pir:E83199%3B conserved hypothetical protein PA3578 [imported] -%3B E%3D1e-57 pir:A83301%3B hypothetical protein PA2770 [imported] - Pseudomonas%3B E%3D3e-56 COG: BH0283%3B COG0384 Predicted epimerase%2C PhzC/PhzF homolog%3B E%3D5e-63 PFAM: PF02567%3B Phenazine biosynthesis-like protein%3B E%3D7.7e-27 gene gene6427 http://www.ncbi.nlm.nih.gov/gene/?term=RB11512 RB11515 RB11515 RB11515 6224420 6224644 + hypothetical protein PMID: 10952301 best DB hits: BLAST: pir:H82471%3B hypothetical protein VCA0329 VCA0298 VCA0343%3B E%3D1e-09 gene gene6428 http://www.ncbi.nlm.nih.gov/gene/?term=RB11515 RB11516 RB11516 RB11516 6224708 6225331 - hypothetical protein PMID: 9868367 best DB hits: BLAST: ddbj:BAB06554.1%3B (AP001516) BH2835~~unknown conserved protein%3B E%3D7e-30 gb:AAK04163.1%3B AE006245_2 (AE006245) conserved hypothetical%3B E%3D5e-26 swissprot:P54168%3B YPGQ_BACSU HYPOTHETICAL 23.1 KD PROTEIN IN%3B E%3D8e-26 COG: BH2835%3B COG1418 Predicted HD superfamily hydrolase%3B E%3D7e-31 PFAM: PF01966%3B HD domain%3B E%3D2e-14 gene gene6429 http://www.ncbi.nlm.nih.gov/gene/?term=RB11516 RB11518 RB11518 RB11518 6225316 6226065 - DNA alkylation repair protein PMID: 10217496 best DB hits: BLAST: embl:CAB40581.1%3B (AJ010128) DNA alkylation repair enzyme%3B E%3D0.079 gb:AAK06230.1%3B AE006441_8 (AE006441) UNKNOWN PROTEIN [Lactococcus%3B E%3D0.13 gene gene6430 http://www.ncbi.nlm.nih.gov/gene/?term=RB11518 RB11519 RB11519 RB11519 6226043 6226288 - hypothetical protein gene gene6431 http://www.ncbi.nlm.nih.gov/gene/?term=RB11519 RB11521 RB11521 RB11521 6226331 6226438 - hypothetical protein gene gene6432 http://www.ncbi.nlm.nih.gov/gene/?term=RB11521 RB11522 RB11522 RB11522 6226435 6226890 - hypothetical protein gene gene6433 http://www.ncbi.nlm.nih.gov/gene/?term=RB11522 RB11524 RB11524 RB11524 6226887 6227744 - Fe-S oxidoreductase PMID: 10688204 best DB hits: BLAST: pir:A81289%3B hypothetical protein Cj1433c [imported] - Campylobacter%3B E%3D2e-07 pir:E71020%3B hypothetical protein PH1458 - Pyrococcus horikoshii%3B E%3D5e-04 gb:AAD45550.1%3B U70376_15 (U70376) SpcY [Streptomyces netropsis]%3B E%3D0.077 COG: PH1458%3B COG1964 Predicted Fe-S oxidoreductases%3B E%3D5e-05 gene gene6434 http://www.ncbi.nlm.nih.gov/gene/?term=RB11524 RB11525 RB11525 RB11525 6227668 6228693 - hypothetical protein gene gene6435 http://www.ncbi.nlm.nih.gov/gene/?term=RB11525 RB11527 RB11527 RB11527 6228684 6229397 - N-acetylgalactosaminyltransferase PMID: 7515051 best DB hits: BLAST: gb:AAA39802.1%3B (L30104) N-acetylgalactosaminyltransferase [Mus%3B E%3D2e-06 PFAM: PF00535%3B Glycosyl transferase%3B E%3D6.9e-07 gene gene6436 http://www.ncbi.nlm.nih.gov/gene/?term=RB11527 RB11529 RB11529 RB11529 6229390 6230154 - beta-1%2C4 N-acetylgalactosaminyltransferase PMID: 1601877 best DB hits: BLAST: gb:AAA35516.1%3B (M83651) beta-1%2C4%3B E%3D6e-07 ddbj:BAA04632.1%3B (D17809) beta-4N-acetylgalactosaminyltransferase%3B E%3D2e-06 gb:AAA39802.1%3B (L30104) N-acetylgalactosaminyltransferase [Mus%3B E%3D2e-06 COG: BS_yveT%3B COG0463 Glycosyltransferases involved in cell wall%3B E%3D0.003 PFAM: PF00535%3B Glycosyl transferase%3B E%3D5.2e-08 gene gene6437 http://www.ncbi.nlm.nih.gov/gene/?term=RB11529 RB1153 RB1153 RB1153 592253 592717 + signal peptide PMID: 11474104 gene gene607 http://www.ncbi.nlm.nih.gov/gene/?term=RB1153 RB11533 RB11533 RB11533 6230151 6231488 - hypothetical protein PMID: 9477341 best DB hits: BLAST: embl:CAC00604.2%3B (AL359776) hypothetical protein L5649.08%3B E%3D3e-07 pir:T20368%3B hypothetical protein D2045.9 - Caenorhabditis elegans%3B E%3D0.064 gb:AAD51367.1%3B AF177203_1 (AF177203) cerebral cell adhesion%3B E%3D0.26 gene gene6438 http://www.ncbi.nlm.nih.gov/gene/?term=RB11533 RB11537 RB11537 RB11537 6231499 6232071 - hypothetical protein gene gene6439 http://www.ncbi.nlm.nih.gov/gene/?term=RB11537 RB11539 RB11539 RB11539 6232054 6232716 + hypothetical protein gene gene6440 http://www.ncbi.nlm.nih.gov/gene/?term=RB11539 RB1154 RB1154 RB1154 592727 593200 + hypothetical protein gene gene608 http://www.ncbi.nlm.nih.gov/gene/?term=RB1154 RB11540 RB11540 RB11540 6232068 6234077 - signal peptide gene gene6441 http://www.ncbi.nlm.nih.gov/gene/?term=RB11540 RB11542 RB11542 RB11542 6232741 6233466 + hypothetical protein gene gene6442 http://www.ncbi.nlm.nih.gov/gene/?term=RB11542 RB11543 RB11543 RB11543 6233896 6234465 + hypothetical protein gene gene6443 http://www.ncbi.nlm.nih.gov/gene/?term=RB11543 RB11545 RB11545 RB11545 6234584 6235075 - signal peptide gene gene6444 http://www.ncbi.nlm.nih.gov/gene/?term=RB11545 RB11548 RB11548 RB11548 6235200 6236972 - signal peptide gene gene6445 http://www.ncbi.nlm.nih.gov/gene/?term=RB11548 RB1155 RB1155 RB1155 593310 593525 + hypothetical protein gene gene609 http://www.ncbi.nlm.nih.gov/gene/?term=RB1155 RB11550 RB11550 drga drga 6237028 6237633 - drgA protein PMID: 9654132 PMID: 8905231 best DB hits: BLAST: pir:S75047%3B drgA protein - Synechocystis sp. (strain PCC 6803)%3B E%3D3e-60 swissprot:Q55233%3B DRGA_SYNY3 DRGA PROTEIN ----- gb: AAA91952.1%3B E%3D7e-56 pir:E82996%3B probable nitroreductase PA5190 [imported] - Pseudomonas%3B E%3D7e-41 COG: slr1719%3B COG0778 Nitroreductase%3B E%3D3e-61 PFAM: PF00881%3B Nitroreductase%3B E%3D1.3e-44 gene gene6446 http://www.ncbi.nlm.nih.gov/gene/?term=RB11550 RB11551 RB11551 RB11551 6237704 6237922 - hypothetical protein gene gene6447 http://www.ncbi.nlm.nih.gov/gene/?term=RB11551 RB11553 RB11553 RB11553 6238060 6238770 - hypothetical protein gene gene6449 http://www.ncbi.nlm.nih.gov/gene/?term=RB11553 RB11559 RB11559 RB11559 6238803 6240191 + squalene-hopene-cyclase PMID: 8905231 best DB hits: BLAST: pir:S75116%3B squalene-hopene-cyclase - Synechocystis sp. (strain PCC%3B E%3D0.16 gene gene6450 http://www.ncbi.nlm.nih.gov/gene/?term=RB11559 RB1156 RB1156 RB1156 593491 595290 + hypothetical protein gene gene610 http://www.ncbi.nlm.nih.gov/gene/?term=RB1156 RB11563 RB11563 RB11563 6240630 6241703 + ABC-type multidrug transport system%2C ATPase component PMID: 1924314 best DB hits: BLAST: ddbj:BAB04773.1%3B (AP001510) transposase (08)ABC transporter%3B E%3D2e-53 ddbj:BAA83955.1%3B (AB024563) YFIL [Bacillus halodurans]%3B E%3D1e-52 ddbj:BAB05817.1%3B (AP001514) ABC transporter (ATP-binding protein)%3B E%3D9e-52 COG: BH1054_2%3B COG0842 Permease component of an ABC-transporter%3B E%3D8e-54 BH2098%3B COG1131 ABC-type multidrug transport system%2C ATPase%3B E%3D8e-53 ybhF%3B COG1131 ABC-type multidrug transport system%2C ATPase component%3B E%3D5e-35 PFAM: PF00005%3B ABC transporter%3B E%3D2.1e-54 gene gene6451 http://www.ncbi.nlm.nih.gov/gene/?term=RB11563 RB11564 RB11564 RB11564 6241706 6243034 + ABC transporter permease PMID: 9384377 best DB hits: BLAST: pir:H69803%3B ABC transporter (ATP-binding protein) homolog yfiM -%3B E%3D1e-05 ddbj:BAA83956.1%3B (AB024563) YFIM [Bacillus halodurans]%3B E%3D0.83 ddbj:BAB04774.1%3B (AP001510) BH1055~~unknown conserved protein%3B E%3D0.83 COG: BS_yfiM%3B COG0842 Permease component of an ABC-transporter%3B E%3D1e-06 gene gene6452 http://www.ncbi.nlm.nih.gov/gene/?term=RB11564 RB11566 RB11566 RB11566 6243111 6243698 + hypothetical protein gene gene6453 http://www.ncbi.nlm.nih.gov/gene/?term=RB11566 RB11569 RB11569 RB11569 6243814 6244071 - hypothetical protein gene gene6454 http://www.ncbi.nlm.nih.gov/gene/?term=RB11569 RB11573 RB11573 RB11573 6244084 6244758 - hypothetical protein gene gene6455 http://www.ncbi.nlm.nih.gov/gene/?term=RB11573 RB11575 RB11575 RB11575 6244601 6245650 + hypothetical protein best DB hits: PFAM: PF00432%3B Prenyltransferase and squalene ox%3B E%3D0.0052 gene gene6456 http://www.ncbi.nlm.nih.gov/gene/?term=RB11575 RB11578 RB11578 RB11578 6245659 6246465 + hypothetical protein gene gene6457 http://www.ncbi.nlm.nih.gov/gene/?term=RB11578 RB11579 RB11579 dnaA dnaA 6246565 6247827 - chromosome replication initiator DnaA PMID: 2987847 PMID: 7584024 PMID: 2846289 best DB hits: BLAST: swissprot:P49994%3B DNAA_STAAU CHROMOSOMAL REPLICATION INITIATOR%3B E%3D1e-29 swissprot:P05648%3B DNAA_BACSU CHROMOSOMAL REPLICATION INITIATOR%3B E%3D4e-29 swissprot:P35887%3B DNAA_CAUCR CHROMOSOMAL REPLICATION INITIATOR%3B E%3D1e-28 COG: BS_dnaA%3B COG0593 ATPase involved in DNA replication initiation%3B E%3D4e-30 PFAM: PF00004%3B ATPase associated with variou%3B E%3D0.00043 PF00308%3B Bacterial dnaA protein%3B E%3D2e-48 gene gene6458 http://www.ncbi.nlm.nih.gov/gene/?term=RB11579 RB11582 RB11582 RB11582 6247852 6249048 - cysteine desulfurase PMID: 10908675 PMID: 7496536 PMID: 8482384 best DB hits: BLAST: pir:A71960%3B probable nitrogenase cofactor synthesis protein nifS -%3B E%3D1e-50 pir:D64547%3B iron-sulfur cofactor synthesis protein - Helicobacter%3B E%3D2e-50 swissprot:Q43884%3B NIFS_ANAAZ NIFS PROTEIN ----- gb: AAA87249.1%3B E%3D6e-49 COG: jhp0206%3B COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase%3B E%3D1e-51 PFAM: PF00266%3B Aminotransferase class-V%3B E%3D1.6e-60 gene gene6459 http://www.ncbi.nlm.nih.gov/gene/?term=RB11582 RB11585 RB11585 RB11585 6249045 6249698 - hypothetical protein gene gene6460 http://www.ncbi.nlm.nih.gov/gene/?term=RB11585 RB11587 RB11587 RB11587 6249757 6251379 + transcriptional regulator PMID: 10086841 best DB hits: BLAST: ddbj:BAB05280.1%3B (AP001512) BH1561~~unknown conserved protein%3B E%3D4e-19 pir:B83247%3B hypothetical protein PA3197 [imported] - Pseudomonas%3B E%3D3e-17 pir:S72956%3B hypothetical protein - Mycobacterium leprae -----%3B E%3D4e-16 COG: BH1561%3B COG1386 Predicted transcriptional regulator containing the%3B E%3D4e-20 NMB0739_2%3B COG1386 Predicted transcriptional regulator containing%3B E%3D1e-05 gene gene6461 http://www.ncbi.nlm.nih.gov/gene/?term=RB11587 RB11589 RB11589 RB11589 6250897 6251607 - transmembrane protein gene gene6462 http://www.ncbi.nlm.nih.gov/gene/?term=RB11589 RB11593 RB11593 RB11593 6251620 6251835 - hypothetical protein gene gene6463 http://www.ncbi.nlm.nih.gov/gene/?term=RB11593 RB11594 RB11594 RB11594 6251792 6252298 + two-component response regulator PMID: 7699720 best DB hits: BLAST: ddbj:BAB05983.1%3B (AP001514) two-component response regulator%3B E%3D2e-09 gb:AAF12879.1%3B AF022186_1 (AF022186) unknown [Cyanidium caldarium]%3B E%3D5e-09 gb:AAD47845.1%3B AF171076_1 (AF171076) probable CheY1 protein%3B E%3D6e-09 COG: BH2264%3B COG0745 Response regulators consisting of a CheY-like%3B E%3D2e-10 VCA1096%3B COG0784 CheY-like receiver domains%3B E%3D6e-10 HP1365%3B COG0745 Response regulators consisting of a CheY-like%3B E%3D1e-09 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D6.6e-17 gene gene6464 http://www.ncbi.nlm.nih.gov/gene/?term=RB11594 RB11595 RB11595 RB11595 6252371 6254134 + general secretion pathway protein E PMID: 1944223 best DB hits: BLAST: pir:C75333%3B general secretion pathway protein E - Deinococcus%3B E%3D6e-98 pir:E72032%3B general secretion pathway protein E CP1055 [imported] -%3B E%3D4e-89 pir:D71499%3B probable gen. secretion protein E - Chlamydia%3B E%3D1e-88 COG: DR1964%3B COG2804 Predicted ATPases involved in pili biogenesis%2C PilB%3B E%3D5e-99 PFAM: PF00437%3B Bacterial type II secretion system p%3B E%3D1.3e-138 gene gene6465 http://www.ncbi.nlm.nih.gov/gene/?term=RB11595 RB11597 RB11597 RB11597 6254216 6255379 + general secretion pathway protein F PMID: 1640836 best DB hits: BLAST: pir:A75344%3B pilin biogenesis protein - Deinococcus radiodurans%3B E%3D4e-35 swissprot:P45793%3B TAPC_AERHY TYPE IV PILUS ASSEMBLY PROTEIN TAPC%3B E%3D2e-33 gb:AAC23568.1%3B (AF059249) type IV pilus assembly protein TapC%3B E%3D8e-33 COG: DR1863%3B COG1459 General secretory pathway protein F%3B E%3D3e-36 PFAM: PF00482%3B Bacterial type II secretion system p%3B E%3D2e-53 gene gene6466 http://www.ncbi.nlm.nih.gov/gene/?term=RB11597 RB11598 RB11598 RB11598 6255376 6255735 + exogenous DNA-binding protein PMID: 10086841 best DB hits: BLAST: ddbj:BAB06546.1%3B (AP001516) exogenous DNA-binding protein%3B E%3D0.008 pir:T45730%3B peroxidase-like protein - Arabidopsis thaliana -----%3B E%3D0.46 gene gene6467 http://www.ncbi.nlm.nih.gov/gene/?term=RB11598 RB11599 RB11599 RB11599 6255736 6256485 - hypothetical protein gene gene6468 http://www.ncbi.nlm.nih.gov/gene/?term=RB11599 RB11601 RB11601 RB11601 6256500 6256712 + hypothetical protein gene gene6469 http://www.ncbi.nlm.nih.gov/gene/?term=RB11601 RB11603 RB11603 RB11603 6256722 6256835 + hypothetical protein gene gene6470 http://www.ncbi.nlm.nih.gov/gene/?term=RB11603 RB11604 RB11604 RB11604 6256871 6258829 - sensory transduction histidine kinase PMID: 11406410 PMID: 1574005 best DB hits: BLAST: pir:E83529%3B sensorresponse regulator hybrid PA0928 [imported] -%3B E%3D6e-47 pir:B82427%3B sensor protein TorS VCA0709 [imported] - Vibrio cholerae%3B E%3D1e-45 gb:AAF04854.1%3B AF197912_1 (AF197912) histidine protein kinase%3B E%3D8e-44 COG: PA0928%3B COG0642 Sensory transduction histidine kinases%3B E%3D6e-48 PFAM: PF00672%3B HAMP domain%3B E%3D3.8e-12 PF00512%3B His Kinase A (phosphoacceptor)%3B E%3D2.4e-25 PF02518%3B Histidine kinase-%2C DNA gyrase%3B E%3D6.4e-40 gene gene6471 http://www.ncbi.nlm.nih.gov/gene/?term=RB11604 RB11607 RB11607 RB11607 6258999 6260507 + cytoskeleton assembly control protein best DB hits: BLAST: pir:T37781%3B probable cytoskeleton assembly control protein - fission%3B E%3D0.023 embl:CAA84826.1%3B (Z35768) ORF YBL007c [Saccharomyces cerevisiae]%3B E%3D0.037 pir:T50995%3B related to cytoskeleton assembly control protein SLA1%3B E%3D0.17 gene gene6472 http://www.ncbi.nlm.nih.gov/gene/?term=RB11607 RB1161 RB1161 RB1161 595387 597297 - squalene-hopene cyclase best DB hits: BLAST: pir:T35404%3B probable squalene-hopene cyclase - Streptomyces%3B E%3D0.035 ddbj:BAB09653.1%3B (AB016881) gene_id:MXC17.10~~unknown protein%3B E%3D0.073 gb:AAF80384.1%3B AF159949_1 (AF159949) cycloartenol synthase%3B E%3D0.79 gene gene611 http://www.ncbi.nlm.nih.gov/gene/?term=RB1161 RB11612 RB11612 RB11612 6260470 6260715 - hypothetical protein gene gene6473 http://www.ncbi.nlm.nih.gov/gene/?term=RB11612 RB11615 RB11615 RB11615 6261140 6262327 + hypothetical protein best DB hits: PFAM: PF00589%3B Phage integrase%3B E%3D4.9e-07 gene gene6476 http://www.ncbi.nlm.nih.gov/gene/?term=RB11615 RB11616 RB11616 RB11616 6262452 6262622 - hypothetical protein gene gene6477 http://www.ncbi.nlm.nih.gov/gene/?term=RB11616 RB11617 RB11617 RB11617 6262796 6263689 - hypothetical protein gene gene6478 http://www.ncbi.nlm.nih.gov/gene/?term=RB11617 RB11618 RB11618 RB11618 6263708 6265366 + type I restriction enzyme M protein PMID: 8412658 PMID: 9440532 best DB hits: BLAST: gb:AAG59530.1%3B AE005666_2 (AE005666) restriction%3B E%3D2e-32 swissprot:Q47282%3B T1ME_ECOLI TYPE I RESTRICTION ENZYME ECOEI M%3B E%3D2e-32 pir:A47200%3B EcoA system protein M - Escherichia coli ----- gb:%3B E%3D1e-31 COG: hsdM%3B COG0286 Type I restriction-modification system%3B E%3D3e-19 PFAM: PF02506%3B Type I restriction modification s%3B E%3D6.9e-10 PF02384%3B N-6 DNA Methylase%3B E%3D3.2e-16 gene gene6479 http://www.ncbi.nlm.nih.gov/gene/?term=RB11618 RB11619 RB11619 RB11619 6265363 6266544 + type I restriction modification enzyme%2C S subunit PMID: 6304321 best DB hits: BLAST: gb:AAG18734.1%3B (AE004978) type I restriction modification enzyme%2C%3B E%3D6e-23 swissprot:P06990%3B T1SB_ECOLI TYPE I RESTRICTION ENZYME ECOBI%3B E%3D8e-16 pir:B64316%3B restriction modification system S chain homolog -%3B E%3D2e-12 COG: VNG0107G%3B COG0732 Restriction endonuclease S subunits%3B E%3D6e-24 PFAM: PF01420%3B Type I restriction modification%3B E%3D1.6e-10 gene gene6480 http://www.ncbi.nlm.nih.gov/gene/?term=RB11619 RB11622 RB11622 RB11622 6266567 6269980 + type I restriction enzyme%2C R protein PMID: 8412658 best DB hits: BLAST: gb:AAG59531.1%3B AE005666_3 (AE005666) restriction%3B E%3D5e-31 swissprot:Q07736%3B T1RA_ECOLI TYPE I RESTRICTION ENZYME ECOAI R%3B E%3D6e-31 swissprot:P08956%3B T1RK_ECOLI TYPE I RESTRICTION ENZYME ECOKI R%3B E%3D1e-30 COG: hsdR%3B COG0610 Restriction enzymes type I helicase subunits and%3B E%3D1e-31 VC0812_2%3B COG1061 DNA or RNA helicases of superfamily II%3B E%3D9e-13 MJECL40%3B COG0610 Restriction enzymes type I helicase subunits and%3B E%3D3e-05 PFAM: PF00270%3B DEAD/DEAH box helicase%3B E%3D1.5e-06 PF00271%3B Helicase conserved C-terminal doma%3B E%3D0.00061 gene gene6481 http://www.ncbi.nlm.nih.gov/gene/?term=RB11622 RB11624 RB11624 RB11624 6269998 6271044 + hypothetical protein gene gene6482 http://www.ncbi.nlm.nih.gov/gene/?term=RB11624 RB11626 RB11626 RB11626 6271177 6272688 - preprotein translocase SecA chain PMID: 8051008 best DB hits: BLAST: pir:G69754%3B hypothetical protein yccF - Bacillus subtilis -----%3B E%3D0.030 ddbj:BAB07325.1%3B (AP001519) preprotein translocase subunit%3B E%3D0.082 pir:E81368%3B preprotein translocase SECA chain Cj0942c [imported] -%3B E%3D0.16 COG: BS_yccF%3B COG3318 Predicted metal-binding protein related to the%3B E%3D0.003 BH3606%3B COG0653 Preprotein translocase subunit SecA (ATPase%2C RNA%3B E%3D0.008 PFAM: PF02810%3B SEC-C motif%3B E%3D1.9e-08 gene gene6483 http://www.ncbi.nlm.nih.gov/gene/?term=RB11626 RB11627 RB11627 RB11627 6272877 6273080 - hypothetical protein gene gene6484 http://www.ncbi.nlm.nih.gov/gene/?term=RB11627 RB11628 RB11628 RB11628 6273215 6273466 - hypothetical protein gene gene6485 http://www.ncbi.nlm.nih.gov/gene/?term=RB11628 RB11629 RB11629 RB11629 6273457 6273624 - hypothetical protein gene gene6486 http://www.ncbi.nlm.nih.gov/gene/?term=RB11629 RB11631 RB11631 RB11631 6273726 6274040 + hypothetical protein PMID: 8576032 best DB hits: PFAM: PF01418%3B Helix-turn-helix domain%2C rpiR%3B E%3D0.00028 PF01381%3B Helix-turn-helix%3B E%3D0.27 gene gene6487 http://www.ncbi.nlm.nih.gov/gene/?term=RB11631 RB11633 RB11633 RB11633 6274043 6274366 + hypothetical protein gene gene6488 http://www.ncbi.nlm.nih.gov/gene/?term=RB11633 RB11635 RB11635 strR strR 6274366 6275235 + streptomycin biosynthesis operon regulatory protein PMID: 3118332 best DB hits: BLAST: swissprot:P08076%3B STRR_STRGR STREPTOMYCIN BIOSYNTHESIS OPERON%3B E%3D5e-04 pir:C26674%3B streptomycin resistance hypothetical protein I -%3B E%3D0.032 embl:CAB45047.1%3B (AL078635) transcriptional regulator%3B E%3D0.12 gene gene6489 http://www.ncbi.nlm.nih.gov/gene/?term=RB11635 RB11636 RB11636 RB11636 6275232 6275447 - hypothetical protein gene gene6490 http://www.ncbi.nlm.nih.gov/gene/?term=RB11636 RB11637 RB11637 RB11637 6275480 6276829 + hypothetical protein gene gene6491 http://www.ncbi.nlm.nih.gov/gene/?term=RB11637 RB11638 RB11638 RB11638 6276815 6276943 - hypothetical protein gene gene6492 http://www.ncbi.nlm.nih.gov/gene/?term=RB11638 RB11639 RB11639 RB11639 6276931 6277122 + hypothetical protein gene gene6493 http://www.ncbi.nlm.nih.gov/gene/?term=RB11639 RB1164 RB1164 exbD exbD 597316 597714 - biopolymer transport ExbD protein PMID: 2670903 PMID: 10517598 best DB hits: BLAST: gb:AAC78852.1%3B (AF087669) ExbD [Bordetella bronchiseptica]%3B E%3D1e-06 pir:T44783%3B exbD protein [imported] - Bordetella pertussis -----%3B E%3D3e-06 pir:A71687%3B tolR protein (tolR) RP310 - Rickettsia prowazekii%3B E%3D3e-06 COG: RP310%3B COG0848 Biopolymer transport protein%3B E%3D4e-07 PFAM: PF02472%3B Biopolymer transport protein ExbD/To%3B E%3D4.1e-10 gene gene612 http://www.ncbi.nlm.nih.gov/gene/?term=RB1164 RB11640 RB11640 RB11640 6277277 6277447 - hypothetical protein gene gene6494 http://www.ncbi.nlm.nih.gov/gene/?term=RB11640 RB11641 RB11641 RB11641 6277621 6278514 - hypothetical protein gene gene6495 http://www.ncbi.nlm.nih.gov/gene/?term=RB11641 RB11642 RB11642 RB11642 6278533 6280191 + type I restriction enzym%2C M protein PMID: 8412658 best DB hits: BLAST: gb:AAG59530.1%3B AE005666_2 (AE005666) restriction%3B E%3D1e-32 swissprot:Q47282%3B T1ME_ECOLI TYPE I RESTRICTION ENZYME ECOEI M%3B E%3D5e-32 pir:A47200%3B EcoA system protein M - Escherichia coli ----- gb:%3B E%3D5e-32 COG: hsdM%3B COG0286 Type I restriction-modification system%3B E%3D1e-19 PFAM: PF02506%3B Type I restriction modification s%3B E%3D7e-11 PF02384%3B N-6 DNA Methylase%3B E%3D1.9e-15 gene gene6496 http://www.ncbi.nlm.nih.gov/gene/?term=RB11642 RB11643 RB11643 hsdS hsdS 6280188 6281357 + restriction modification system S chain-like protein PMID: 6304321 best DB hits: BLAST: pir:B64316%3B restriction modification system S chain homolog -%3B E%3D8e-25 pir:G82522%3B type I restriction-modification system specificity%3B E%3D3e-22 pir:C82823%3B type I restriction-modification system specificity%3B E%3D4e-22 COG: MJ0130m%3B COG0732 Restriction endonuclease S subunits%3B E%3D8e-26 PFAM: PF01420%3B Type I restriction modification D%3B E%3D2.6e-32 gene gene6497 http://www.ncbi.nlm.nih.gov/gene/?term=RB11643 RB11644 RB11644 RB11644 6281254 6282816 - kinesin Unc104/KIF1a-like protein PMID: 10545495 best DB hits: BLAST: gb:AAF63384.1%3B (AF245277) kinesin Unc104KIF1a homolog%3B E%3D0.024 swissprot:P08799%3B MYS2_DICDI MYOSIN II HEAVY CHAIN%2C NON MUSCLE%3B E%3D0.12 swissprot:P50533%3B XCPE_XENLA CHROMOSOME ASSEMBLY PROTEIN XCAP-E%3B E%3D0.14 gene gene6498 http://www.ncbi.nlm.nih.gov/gene/?term=RB11644 RB11647 RB11647 RB11647 6282925 6283401 + hypothetical protein gene gene6499 http://www.ncbi.nlm.nih.gov/gene/?term=RB11647 RB11649 RB11649 RB11649 6283377 6283484 + hypothetical protein gene gene6500 http://www.ncbi.nlm.nih.gov/gene/?term=RB11649 RB1165 RB1165 exbB exbB 597714 598769 - biopolymer transport ExbB-related protein PMID: 8437515 best DB hits: BLAST: pir:D82726%3B conserved hypothetical protein XF1079 [imported] -%3B E%3D8e-21 pir:G83274%3B probable tolQ-type transport protein PA2983 [imported] -%3B E%3D4e-19 embl:CAB50918.1%3B (AJ243354) hypothetical protein [Pseudomonas%3B E%3D8e-16 COG: XF1079%3B COG0811 Biopolymer transport proteins%3B E%3D8e-22 PFAM: PF01618%3B MotA/TolQ/ExbB proton channel famil%3B E%3D3.1e-21 gene gene613 http://www.ncbi.nlm.nih.gov/gene/?term=RB1165 RB11650 RB11650 RB11650 6283604 6284983 - NADH-dependent deydrogenase PMID: 10086841 best DB hits: BLAST: gb:AAC23913.1%3B (AF039207) NADH-dependent dehydrogenase homolog%3B E%3D6e-10 gb:AAG09709.1%3B AF218837_4 (AF218837) unknown [Pasteurella%3B E%3D3e-09 ddbj:BAB04967.1%3B (AP001511) NADH-dependent dyhydrogenase%3B E%3D4e-09 COG: BH1248%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D4e-10 PFAM: PF01408%3B Oxidoreductase%2C NAD-bindi%3B E%3D2.1e-18 gene gene6501 http://www.ncbi.nlm.nih.gov/gene/?term=RB11650 RB11652 RB11652 RB11652 6285093 6286004 - signal peptide gene gene6502 http://www.ncbi.nlm.nih.gov/gene/?term=RB11652 RB11654 RB11654 RB11654 6286299 6287549 - carboxypeptidase PMID: 10984043 best DB hits: BLAST: swissprot:Q09296%3B YQO6_CAEEL HYPOTHETICAL 55.9 KD PROTEIN EEED8.6%3B E%3D3e-08 pir:H83290%3B conserved hypothetical protein PA2831 [imported] -%3B E%3D7e-07 pir:T33157%3B hypothetical protein F56H1.5 - Caenorhabditis elegans%3B E%3D9e-07 COG: PA2831%3B COG2866 Predicted carboxypeptidase%3B E%3D7e-08 gene gene6503 http://www.ncbi.nlm.nih.gov/gene/?term=RB11654 RB11660 RB11660 RB11660 6288092 6290338 + serine/threonine protein kinase related protein PMID: 9371463 best DB hits: BLAST: pir:H69064%3B serinethreonine protein kinase related protein -%3B E%3D0.001 pir:T26310%3B hypothetical protein W09D6.1 - Caenorhabditis elegans%3B E%3D0.64 COG: MTH1485%3B COG1520 Uncharacterized proteins of WD40-like repeat family%3B E%3D1e-04 PFAM: PF01011%3B PQQ enzyme repeat%3B E%3D0.047 gene gene6504 http://www.ncbi.nlm.nih.gov/gene/?term=RB11660 RB11662 RB11662 RB11662 6290362 6290469 + hypothetical protein gene gene6505 http://www.ncbi.nlm.nih.gov/gene/?term=RB11662 RB11663 RB11663 RB11663 6290653 6292005 + transmembrane transport protein PMID: 9294455 best DB hits: BLAST: embl:CAB61680.1%3B (AL133213) transmembrane transport%3B E%3D6e-11 pir:T47026%3B hypothetical protein [imported] - Yersinia pestis%3B E%3D4e-08 swissprot:P46333%3B CSBC_BACSU PROBABLE METABOLITE TRANSPORT PROTEIN%3B E%3D2e-07 COG: BS_yxcC%3B COG0477 Permeases of the major facilitator superfamily%3B E%3D2e-08 PFAM: PF00083%3B Sugar (and other) transporter%3B E%3D2.7e-13 gene gene6506 http://www.ncbi.nlm.nih.gov/gene/?term=RB11663 RB11664 RB11664 RB11664 6292018 6292128 + hypothetical protein gene gene6507 http://www.ncbi.nlm.nih.gov/gene/?term=RB11664 RB11665 RB11665 RB11665 6292134 6292613 - hypothetical protein gene gene6508 http://www.ncbi.nlm.nih.gov/gene/?term=RB11665 RB11667 RB11667 RB11667 6292707 6293231 - hypothetical protein gene gene6509 http://www.ncbi.nlm.nih.gov/gene/?term=RB11667 RB11668 RB11668 RB11668 6293213 6294166 + sensor kinase-like protein PMID: 3595559 best DB hits: BLAST: gb:AAF13178.1%3B AF181079_1 (AF181079) sensor kinase homolog%3B E%3D2e-28 pir:D83491%3B probable sensorresponse regulator hybrid PA1243%3B E%3D4e-28 gb:AAG00949.1%3B AF273679_3 (AF273679) FixL [Rhizobium etli]%3B E%3D3e-27 COG: PA1243%3B COG0642 Sensory transduction histidine kinases%3B E%3D4e-29 PFAM: PF00512%3B His Kinase A (phosphoacceptor) doma%3B E%3D5.2e-12 PF02518%3B Histidine kinase-%2C DNA gyrase B-%2C p%3B E%3D3.1e-28 gene gene6510 http://www.ncbi.nlm.nih.gov/gene/?term=RB11668 RB11669 RB11669 atoC atoC 6294163 6295608 + cetoacetate metabolism regulatory protein atoC PMID: 8346225 best DB hits: BLAST: swissprot:Q06065%3B ATOC_ECOLI ACETOACETATE METABOLISM REGULATORY%3B E%3D5e-91 swissprot:P03029%3B NTRC_KLEPN NITROGEN ASSIMILATION REGULATORY%3B E%3D4e-90 embl:CAA26473.1%3B (X02617) pot. ntrC gene product (aa 1-469)%3B E%3D8e-90 COG: atoC%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D4e-92 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D2.3e-29 PF00158%3B Sigma-54 interaction domain%3B E%3D5.1e-128 gene gene6511 http://www.ncbi.nlm.nih.gov/gene/?term=RB11669 RB11670 RB11670 RB11670 6295656 6296792 + ferric enterobactin esterase-related protein FeS PMID: 2974033 best DB hits: BLAST: pir:A75265%3B ferric enterobactin esterase-related protein -%3B E%3D0.002 COG: DR2506%3B COG2382 Enterochelin esterase and related enzymes%3B E%3D2e-04 gene gene6512 http://www.ncbi.nlm.nih.gov/gene/?term=RB11670 RB11671 RB11671 RB11671 6296756 6296929 + hypothetical protein gene gene6513 http://www.ncbi.nlm.nih.gov/gene/?term=RB11671 RB11672 RB11672 RB11672 6297076 6297429 + hypothetical protein gene gene6514 http://www.ncbi.nlm.nih.gov/gene/?term=RB11672 RB11673 RB11673 lepA lepA 6297457 6299253 - GTP-binding protein LepA binds to the ribosome on the universally-conserved alpha-sarcin loop gene gene6515 http://www.ncbi.nlm.nih.gov/gene/?term=RB11673 RB11674 RB11674 RB11674 6299390 6300109 + hypothetical protein gene gene6516 http://www.ncbi.nlm.nih.gov/gene/?term=RB11674 RB11675 RB11675 RB11675 6299494 6300012 + signal peptide gene gene6517 http://www.ncbi.nlm.nih.gov/gene/?term=RB11675 RB11676 RB11676 RB11676 6299509 6300075 - hypothetical protein gene gene6518 http://www.ncbi.nlm.nih.gov/gene/?term=RB11676 RB11677 RB11677 RB11677 6300078 6300221 - hypothetical protein gene gene6519 http://www.ncbi.nlm.nih.gov/gene/?term=RB11677 RB11678 RB11678 RB11678 6300187 6300366 + hypothetical protein gene gene6520 http://www.ncbi.nlm.nih.gov/gene/?term=RB11678 RB11679 RB11679 RB11679 6300368 6300523 + hypothetical protein gene gene6521 http://www.ncbi.nlm.nih.gov/gene/?term=RB11679 RB1168 RB1168 RB1168 598766 600994 - hypothetical protein best DB hits: BLAST: pir:B81428%3B probable periplasmic protein Cj0114 [imported] -%3B E%3D0.62 gene gene614 http://www.ncbi.nlm.nih.gov/gene/?term=RB1168 RB11680 RB11680 RB11680 6300456 6300635 - hypothetical protein gene gene6522 http://www.ncbi.nlm.nih.gov/gene/?term=RB11680 RB11681 RB11681 RB11681 6300601 6300780 + hypothetical protein gene gene6523 http://www.ncbi.nlm.nih.gov/gene/?term=RB11681 RB11682 RB11682 RB11682 6300763 6300903 - hypothetical protein gene gene6524 http://www.ncbi.nlm.nih.gov/gene/?term=RB11682 RB11683 RB11683 RB11683 6300897 6301049 - hypothetical protein gene gene6525 http://www.ncbi.nlm.nih.gov/gene/?term=RB11683 RB11685 RB11685 RB11685 6301077 6301256 - hypothetical protein gene gene6526 http://www.ncbi.nlm.nih.gov/gene/?term=RB11685 RB11686 RB11686 RB11686 6301222 6301401 + hypothetical protein gene gene6527 http://www.ncbi.nlm.nih.gov/gene/?term=RB11686 RB11687 RB11687 RB11687 6301412 6301528 + hypothetical protein gene gene6528 http://www.ncbi.nlm.nih.gov/gene/?term=RB11687 RB11688 RB11688 kdtA kdtA 6301529 6302842 - 3-deoxy-D-manno-octulosonic-acid transferase PMID: 2033061 PMID: 1447141 best DB hits: BLAST: gb:AAC16417.1%3B (AF026386) WaaA [Salmonella typhimurium]%3B E%3D4e-53 gb:AAC69691.1%3B (AF019747) Kdo transferase WaaA [Escherichia coli]%3B E%3D9e-52 swissprot:P23282%3B KDTA_ECOLI 3-DEOXY-D-MANNO-OCTULOSONIC-ACID%3B E%3D1e-51 COG: kdtA%3B COG1519 3-Deoxy-D-manno-octulosonic-acid transferase%3B E%3D9e-53 gene gene6529 http://www.ncbi.nlm.nih.gov/gene/?term=RB11688 RB11690 RB11690 SecA SecA 6302988 6306704 - preprotein translocase subunit SecA functions in protein export%3B can interact with acidic membrane phospholipids and the SecYEG protein complex%3B binds to preproteins%3B binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein%3B ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane%3B additional proteins SecD/F/YajC aid SecA recycling%3B exists in an equilibrium between monomers and dimers%3B may possibly form higher order oligomers%3B proteins in this cluster correspond SecA1%3B SecA2 is not essential and seems to play a role in secretion of a subset of proteins gene gene6530 http://www.ncbi.nlm.nih.gov/gene/?term=RB11690 RB11693 RB11693 RB11693 6306775 6307680 - hypothetical protein PMID: 10653753 best DB hits: BLAST: embl:CAB72937.1%3B (AJ243321) hypothetical protein [Lactobacillus%3B E%3D7e-27 embl:CAB88179.1%3B (AL352972) hypothetical protein SCC30.09c%3B E%3D1e-25 gb:AAF45006.1%3B AE003406_211 (AE003416) symbol%3Danon-35F36A%3B E%3D5e-23 COG: Cj0705%3B COG0327 Uncharacterized ACR%3B E%3D2e-16 PFAM: PF01784%3B Domain of unknown function DUF34%3B E%3D8.3e-47 gene gene6531 http://www.ncbi.nlm.nih.gov/gene/?term=RB11693 RB11698 RB11698 RB11698 6307780 6308550 - hypothetical protein PMID: 8905231 best DB hits: BLAST: swissprot:Q04737%3B Y751_SYNY3 HYPOTHETICAL 27.8 KD PROTEIN SLR0751%3B E%3D0.29 ddbj:BAA76764.1%3B (AB023137) KIAA0920 protein [Homo sapiens]%3B E%3D0.73 gene gene6532 http://www.ncbi.nlm.nih.gov/gene/?term=RB11698 RB117 RB117 RB117 51136 51525 - hypothetical protein gene gene64 http://www.ncbi.nlm.nih.gov/gene/?term=RB117 RB1170 RB1170 degT degT 600826 602079 - pleiotropic regulatory protein PMID: 2104607 best DB hits: BLAST: swissprot:P15263%3B DEGT_BACST PLEIOTROPIC REGULATORY PROTEIN%3B E%3D2e-80 ddbj:BAA31964.1%3B (D64132) A porR mutant of Pophyromonas%3B E%3D3e-68 pir:D69025%3B pleiotropic regulatory protein DegT - Methanobacterium%3B E%3D2e-67 COG: MTH1188%3B COG0399 Predicted pyridoxal phosphate-dependent enzyme%3B E%3D2e-68 PFAM: PF01041%3B DegT/DnrJ/EryC1/StrS family%3B E%3D1.2e-146 gene gene615 http://www.ncbi.nlm.nih.gov/gene/?term=RB1170 RB11701 RB11701 RB11701 6308278 6310983 + TPR repeat-containing protein gene gene6533 http://www.ncbi.nlm.nih.gov/gene/?term=RB11701 RB11703 RB11703 RB11703 6311093 6311251 + hypothetical protein gene gene6534 http://www.ncbi.nlm.nih.gov/gene/?term=RB11703 RB11704 RB11704 RB11704 6311224 6311406 + hypothetical protein gene gene6535 http://www.ncbi.nlm.nih.gov/gene/?term=RB11704 RB11706 RB11706 RB11706 6311407 6312933 + periplasmic serine proteinase Do PMID: 3057437 best DB hits: BLAST: pir:F72359%3B periplasmic serine proteinase Do (EC 3.4.21.-) -%3B E%3D9e-41 pir:F81329%3B serine proteinase (proteinase DO) (EC 3.4.21.-) Cj1228c%3B E%3D2e-40 embl:CAA57948.1%3B (X82628) serine protease [Campylobacter jejuni]%3B E%3D2e-40 COG: TM0571%3B COG0265 Trypsin-like serine proteases%2C typically%3B E%3D8e-42 CT823%3B COG0265 Trypsin-like serine proteases%2C typically periplasmic%2C%3B E%3D2e-40 PA0766%3B COG0265 Trypsin-like serine proteases%2C typically%3B E%3D5e-40 PFAM: PF00089%3B Trypsin%3B E%3D3.8e-20 PF00595%3B PDZ domain (Also known as DHR or GLG%3B E%3D4.9e-06 gene gene6536 http://www.ncbi.nlm.nih.gov/gene/?term=RB11706 RB11707 RB11707 RB11707 6312937 6313188 + hypothetical protein gene gene6537 http://www.ncbi.nlm.nih.gov/gene/?term=RB11707 RB11708 RB11708 RB11708 6313240 6313833 + hypothetical protein PMID: 10360571 best DB hits: BLAST: pir:C72318%3B hypothetical protein - Thermotoga maritima (strain MSB8)%3B E%3D7e-04 gene gene6538 http://www.ncbi.nlm.nih.gov/gene/?term=RB11708 RB11712 RB11712 RB11712 6313833 6315776 + SWF/SNF family helicase PMID: 7908117 best DB hits: BLAST: pir:C72027%3B swisnf family helicase_2 - Chlamydophila pneumoniae%3B E%3D1e-50 gb:AAC71234.1%3B (U39681) ATP-dependent RNA helicase%2C %3B E%3D4e-50 ddbj:BAA99057.1%3B (AP002548) SWISNF family helicase_2%3B E%3D5e-50 COG: CPn0849%3B COG0553 Superfamily II DNA/RNA helicases%2C SNF2 family%3B E%3D1e-51 PFAM: PF01102%3B Glycophorin A%3B E%3D0.41 PF00176%3B SNF2 and others N-terminal doma%3B E%3D6.4e-34 PF00271%3B Helicase conserved C-terminal d%3B E%3D1e-17 gene gene6539 http://www.ncbi.nlm.nih.gov/gene/?term=RB11712 RB11716 RB11716 RB11716 6315714 6315938 - hypothetical protein gene gene6540 http://www.ncbi.nlm.nih.gov/gene/?term=RB11716 RB11718 RB11718 RB11718 6315877 6316194 - hypothetical protein gene gene6541 http://www.ncbi.nlm.nih.gov/gene/?term=RB11718 RB1172 RB1172 RB1172 602343 602987 - hypothetical protein gene gene616 http://www.ncbi.nlm.nih.gov/gene/?term=RB1172 RB11720 RB11720 RB11720 6316234 6317028 + hypothetical protein gene gene6542 http://www.ncbi.nlm.nih.gov/gene/?term=RB11720 RB11722 RB11722 RB11722 6317037 6318065 + hypothetical protein PMID: 9734811 PMID: 95299934 PMID: 9262406 best DB hits: BLAST: ddbj:BAA31647.1%3B (AB014572) KIAA0672 protein [Homo sapiens]%3B E%3D0.007 pir:T12533%3B hypothetical protein DKFZp434B034.1 - human (fragment)%3B E%3D0.010 gene gene6543 http://www.ncbi.nlm.nih.gov/gene/?term=RB11722 RB11726 RB11726 RB11726 6318144 6318821 + hypothetical protein gene gene6544 http://www.ncbi.nlm.nih.gov/gene/?term=RB11726 RB11728 RB11728 RB11728 6318857 6319744 + tagatose 3-epimerase PMID: 8905231 PMID: 10561547 best DB hits: BLAST: swissprot:P73599%3B YD04_SYNY3 HYPOTHETICAL 32.8 KDA PROTEIN SLL1304%3B E%3D1e-25 swissprot:O50580%3B DT3E_PSECI D-TAGATOSE 3-EPIMERASE -----%3B E%3D2e-25 swissprot:Q9WYP7%3B Y416_THEMA HYPOTHETICAL PROTEIN TM0416 -----%3B E%3D3e-14 COG: sll1304%3B COG1082 Predicted endonucleases%3B E%3D1e-26 gene gene6545 http://www.ncbi.nlm.nih.gov/gene/?term=RB11728 RB11729 RB11729 RB11729 6319752 6320009 - hypothetical protein gene gene6546 http://www.ncbi.nlm.nih.gov/gene/?term=RB11729 RB11730 RB11730 RB11730 6320023 6320817 + hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:F83604%3B hypothetical protein PA0339 [imported] - Pseudomonas%3B E%3D1e-10 ddbj:BAB05446.1%3B (AP001512) BH1727~~unknown conserved protein in%3B E%3D5e-08 swissprot:P54797%3B T10_MOUSE SERTHR-RICH PROTEIN T10 IN DGCR%3B E%3D6e-07 COG: PA0339%3B COG3332 Uncharacterized ACR%3B E%3D1e-11 gene gene6547 http://www.ncbi.nlm.nih.gov/gene/?term=RB11730 RB11731 RB11731 RB11731 6320896 6321063 - hypothetical protein gene gene6548 http://www.ncbi.nlm.nih.gov/gene/?term=RB11731 RB11732 RB11732 RB11732 6321170 6321625 - hypothetical protein gene gene6549 http://www.ncbi.nlm.nih.gov/gene/?term=RB11732 RB11736 RB11736 RB11736 6321668 6322957 + hypothetical protein best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene6550 http://www.ncbi.nlm.nih.gov/gene/?term=RB11736 RB11738 RB11738 RB11738 6322967 6323086 - hypothetical protein gene gene6551 http://www.ncbi.nlm.nih.gov/gene/?term=RB11738 RB11739 RB11739 RB11739 6323080 6323274 + hypothetical protein gene gene6552 http://www.ncbi.nlm.nih.gov/gene/?term=RB11739 RB1174 RB1174 RB1174 603031 603498 + signal peptide gene gene617 http://www.ncbi.nlm.nih.gov/gene/?term=RB1174 RB11742 RB11742 RB11742 6323302 6326160 + signal peptide best DB hits: PFAM: PF02030%3B Hypothetical mycoplasma lipopro%3B E%3D0.82 gene gene6553 http://www.ncbi.nlm.nih.gov/gene/?term=RB11742 RB11746 RB11746 RB11746 6326162 6327673 + sulfatase gene gene6554 http://www.ncbi.nlm.nih.gov/gene/?term=RB11746 RB11748 RB11748 RB11748 6327844 6328017 + hypothetical protein gene gene6555 http://www.ncbi.nlm.nih.gov/gene/?term=RB11748 RB11749 RB11749 RB11749 6328064 6328354 + transposase A PMID: 2824781 best DB hits: BLAST: gb:AAG58100.1%3B AE005527_3 (AE005527) unknown protein encoded by%3B E%3D0.002 gb:AAG53987.1%3B AF327445_1 (AF327445) transposase A%3B E%3D0.003 gb:AAF28119.1%3B AF153317_15 (AF153317) InsA [Shigella%3B E%3D0.007 COG: PA1937%3B COG2963 Transposase%3B E%3D0.004 PFAM: PF01381%3B Helix-turn-helix%3B E%3D0.53 PF01527%3B Transposase%3B E%3D6.1e-18 gene gene6556 http://www.ncbi.nlm.nih.gov/gene/?term=RB11749 RB1175 RB1175 RB1175 603172 603621 - hypothetical protein gene gene618 http://www.ncbi.nlm.nih.gov/gene/?term=RB1175 RB11750 RB11750 RB11750 6328357 6329235 + transposase PMID: 1482189 PMID: 11337471 PMID: 1482192 best DB hits: BLAST: gb:AAA88919.1%3B (U13013) ORFB [Leptospira interrogans]%3B E%3D3e-47 gb:AAA88916.1%3B (U13012) ORFB [Leptospira interrogans]%3B E%3D1e-46 gb:AAC05649.1%3B (AF038931) probable transposase-related protein%3B E%3D1e-45 COG: DRB0019.2%3B COG2801 transposase%3B E%3D1e-35 PFAM: PF00665%3B Integrase core domain%3B E%3D4.8e-40 gene gene6557 http://www.ncbi.nlm.nih.gov/gene/?term=RB11750 RB11751 RB11751 RB11751 6329316 6329819 + hypothetical protein gene gene6558 http://www.ncbi.nlm.nih.gov/gene/?term=RB11751 RB11752 RB11752 RB11752 6329394 6329918 - hypothetical protein gene gene6559 http://www.ncbi.nlm.nih.gov/gene/?term=RB11752 RB11756 RB11756 rrmA rrmA 6329915 6330736 - ribosomal RNA large subunit methyltransferase A PMID: 9440525 best DB hits: BLAST: swissprot:P36999%3B RRMA_ECOLI RIBOSOMAL RNA LARGE SUBUNIT%3B E%3D2e-21 gb:AAG56811.1%3B AE005405_2 (AE005405) enzyme [Escherichia%3B E%3D1e-20 pir:F83500%3B rRNA methyltransferase PA1161 [imported] - Pseudomonas%3B E%3D4e-20 COG: rrmA%3B COG0500 SAM-dependent methyltransferases%3B E%3D2e-22 gene gene6560 http://www.ncbi.nlm.nih.gov/gene/?term=RB11756 RB11757 RB11757 RB11757 6330717 6330992 + hypothetical protein gene gene6561 http://www.ncbi.nlm.nih.gov/gene/?term=RB11757 RB11758 RB11758 RB11758 6330939 6331238 - hypothetical protein gene gene6562 http://www.ncbi.nlm.nih.gov/gene/?term=RB11758 RB11759 RB11759 RB11759 6331315 6331512 - hypothetical protein gene gene6563 http://www.ncbi.nlm.nih.gov/gene/?term=RB11759 RB11760 RB11760 RB11760 6331527 6331922 + hypothetical protein gene gene6564 http://www.ncbi.nlm.nih.gov/gene/?term=RB11760 RB11762 RB11762 strI strI 6331874 6333352 - streptomycin biosynthesis protein strI PMID: 1654502 best DB hits: BLAST: swissprot:P09400%3B STRI_STRGR STREPTOMYCIN BIOSYNTHESIS PROTEIN%3B E%3D7e-09 ddbj:BAB05939.1%3B (AP001514) dehydrogenase [Bacillus halodurans]%3B E%3D5e-06 swissprot:P40332%3B YISS_BACSU HYPOTHETICAL 37.5 KD PROTEIN IN%3B E%3D0.014 COG: BH2220%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D4e-07 PFAM: PF01408%3B Oxidoreductase%2C NAD-bindi%3B E%3D1.4e-05 gene gene6565 http://www.ncbi.nlm.nih.gov/gene/?term=RB11762 RB11765 RB11765 RB11765 6333558 6334091 + hypothetical protein gene gene6566 http://www.ncbi.nlm.nih.gov/gene/?term=RB11765 RB11766 RB11766 RB11766 6334355 6334744 + hypothetical protein gene gene6567 http://www.ncbi.nlm.nih.gov/gene/?term=RB11766 RB11767 RB11767 RB11767 6334763 6334939 + hypothetical protein gene gene6568 http://www.ncbi.nlm.nih.gov/gene/?term=RB11767 RB11768 RB11768 RB11768 6334808 6334939 + hypothetical protein gene gene6569 http://www.ncbi.nlm.nih.gov/gene/?term=RB11768 RB11769 RB11769 RB11769 6335006 6359527 + aggregation factor core protein MAFp3%2C isoform C PMID: 98010624 best DB hits: BLAST: pir:T08615%3B aggregation factor core protein MAFp3%2C isoform C -%3B E%3D1e-12 pir:T08617%3B aggregation factor core protein MAFp3%2C isoform E -%3B E%3D4e-12 pir:T08614%3B aggregation factor core protein MAFp3%2C isoform B -%3B E%3D5e-08 PFAM: PF00028%3B Cadherin domain%3B E%3D1.6e-12 gene gene6570 http://www.ncbi.nlm.nih.gov/gene/?term=RB11769 RB1178 RB1178 RB1178 603844 604059 - integrase PMID: 7492116 best DB hits: BLAST: ddbj:BAB12601.1%3B (AP002527) The peptide is not translated beyond%3B E%3D1e-04 gb:AAK01408.1%3B AF324211_1 (AF324211) site-specific tyrosine%3B E%3D2e-04 pir:C82476%3B site-specific recombinase IntI4 VCA0291 [imported] -%3B E%3D2e-04 COG: VCA0291%3B COG0582 Integrase%3B E%3D3e-05 PFAM: PF00589%3B Phage integrase%3B E%3D0.02 gene gene619 http://www.ncbi.nlm.nih.gov/gene/?term=RB1178 RB1179 RB1179 RB1179 603998 604384 + hypothetical protein gene gene620 http://www.ncbi.nlm.nih.gov/gene/?term=RB1179 RB11796 RB11796 RB11796 6359561 6360256 + signal peptide gene gene6571 http://www.ncbi.nlm.nih.gov/gene/?term=RB11796 RB11798 RB11798 RB11798 6360319 6360450 + hypothetical protein gene gene6572 http://www.ncbi.nlm.nih.gov/gene/?term=RB11798 RB11799 RB11799 RB11799 6360641 6361474 + zinc metalloendopeptidase PMID: 9739094 PMID: 1625703 PMID: 10567266 best DB hits: BLAST: pir:B75578%3B zinc metalloendopeptidase%2C leishmanolysin family -%3B E%3D8e-12 gb:AAB97895.1%3B (AF037165) major surface glycoprotein [Leishmania%3B E%3D0.007 gb:AAB97896.1%3B (AF037166) major surface glycoprotein [Leishmania%3B E%3D0.007 PFAM: PF01457%3B Leishmanolysin%3B E%3D0.063 gene gene6573 http://www.ncbi.nlm.nih.gov/gene/?term=RB11799 RB118 RB118 RB118 51522 52031 - hypothetical protein gene gene65 http://www.ncbi.nlm.nih.gov/gene/?term=RB118 RB1180 RB1180 RB1180 604378 604656 + hypothetical protein gene gene621 http://www.ncbi.nlm.nih.gov/gene/?term=RB1180 RB11801 RB11801 RB11801 6361471 6361782 + hypothetical protein gene gene6574 http://www.ncbi.nlm.nih.gov/gene/?term=RB11801 RB11802 RB11802 RB11802 6361950 6362240 + transposase A PMID: 2824781 best DB hits: BLAST: gb:AAG58100.1%3B AE005527_3 (AE005527) unknown protein encoded by%3B E%3D0.002 gb:AAG53987.1%3B AF327445_1 (AF327445) transposase A%3B E%3D0.003 gb:AAF28119.1%3B AF153317_15 (AF153317) InsA [Shigella%3B E%3D0.007 COG: PA1937%3B COG2963 Transposase%3B E%3D0.004 PFAM: PF01381%3B Helix-turn-helix%3B E%3D0.53 PF01527%3B Transposase%3B E%3D6.1e-18 gene gene6575 http://www.ncbi.nlm.nih.gov/gene/?term=RB11802 RB11803 RB11803 RB11803 6362243 6363121 + transposase PMID: 1482189 PMID: 11337471 PMID: 1482192 best DB hits: BLAST: gb:AAA88919.1%3B (U13013) ORFB [Leptospira interrogans]%3B E%3D3e-47 gb:AAA88916.1%3B (U13012) ORFB [Leptospira interrogans]%3B E%3D1e-46 gb:AAC05649.1%3B (AF038931) probable transposase-related protein%3B E%3D1e-45 COG: DRB0019.2%3B COG2801 transposase%3B E%3D1e-35 PFAM: PF00665%3B Integrase core domain%3B E%3D4.8e-40 gene gene6576 http://www.ncbi.nlm.nih.gov/gene/?term=RB11803 RB11804 RB11804 RB11804 6363139 6363537 - hypothetical protein gene gene6577 http://www.ncbi.nlm.nih.gov/gene/?term=RB11804 RB11805 RB11805 RB11805 6363530 6363715 - hypothetical protein gene gene6578 http://www.ncbi.nlm.nih.gov/gene/?term=RB11805 RB11807 RB11807 RB11807 6363652 6364356 + signal peptide gene gene6579 http://www.ncbi.nlm.nih.gov/gene/?term=RB11807 RB11810 RB11810 RB11810 6364437 6364685 - hypothetical protein gene gene6580 http://www.ncbi.nlm.nih.gov/gene/?term=RB11810 RB11811 RB11811 RB11811 6364750 6365883 + hypothetical protein PMID: 20365717 best DB hits: BLAST: pir:E83347%3B hypothetical protein PA2395 [imported] - Pseudomonas%3B E%3D2e-20 pir:E82768%3B conserved hypothetical protein XF0752 [imported] -%3B E%3D5e-20 pir:A82381%3B conserved hypothetical protein VCA1077 [imported] -%3B E%3D2e-14 COG: PA2395%3B COG1262 Uncharacterized BCR%3B E%3D2e-21 gene gene6581 http://www.ncbi.nlm.nih.gov/gene/?term=RB11811 RB11812 RB11812 RB11812 6365918 6366334 + hypothetical protein gene gene6582 http://www.ncbi.nlm.nih.gov/gene/?term=RB11812 RB11813 RB11813 RB11813 6366331 6366573 + hypothetical protein gene gene6583 http://www.ncbi.nlm.nih.gov/gene/?term=RB11813 RB11816 RB11816 RB11816 6366592 6366729 + hypothetical protein gene gene6584 http://www.ncbi.nlm.nih.gov/gene/?term=RB11816 RB11817 RB11817 spoIIIE spoIIIE 6366714 6369527 - stage III sporulation protein E PMID: 3129532 PMID: 2507870 PMID: 8160014 best DB hits: BLAST: swissprot:P21458%3B SP3E_BACSU STAGE III SPORULATION PROTEIN E%3B E%3D1e-108 pir:C69999%3B DNA translocase stage III sporulation homolog ytpT -%3B E%3D1e-106 swissprot:P45264%3B FTSK_HAEIN CELL DIVISION PROTEIN FTSK HOMOLOG%3B E%3D1e-105 COG: BS_spoIIIE%3B COG1674 DNA segregation ATPase FtsK/SpoIIIE and related%3B E%3D1e-109 ftsK%3B COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins%3B E%3D6e-97 CT739%3B COG1674 DNA segregation ATPase FtsK/SpoIIIE and related%3B E%3D6e-97 PFAM: PF01580%3B FtsK/SpoIIIE family%3B E%3D9.7e-66 gene gene6585 http://www.ncbi.nlm.nih.gov/gene/?term=RB11817 RB1182 RB1182 RB1182 604706 604972 + hypothetical protein gene gene622 http://www.ncbi.nlm.nih.gov/gene/?term=RB1182 RB11822 RB11822 guaB guaB 6369826 6371445 + inosine-5'-monophosphate dehydrogenase PMID: 9537320 best DB hits: BLAST: swissprot:O67820%3B IMDH_AQUAE INOSINE-5'-MONOPHOSPHATE%3B E%3D1e-144 ddbj:BAB03739.1%3B (AP001507) inositol-monophosphate dehydrogenase%3B E%3D1e-140 pir:JC7305%3B IMP dehydrogenase (EC 1.1.1.205) - Bacillus cereus%3B E%3D1e-134 COG: Ta0219%3B COG0516 IMP dehydrogenase/GMP reductase%3B E%3D1e-112 PFAM: PF01574%3B IMP dehydrogenase / GMP reduc%3B E%3D4.3e-49 PF00571%3B CBS domain%3B E%3D2.5e-08 PF01070%3B FMN-dependent dehydrogenase%3B E%3D0.00039 gene gene6586 http://www.ncbi.nlm.nih.gov/gene/?term=RB11822 RB11823 RB11823 RB11823 6371378 6373282 + signal peptide gene gene6587 http://www.ncbi.nlm.nih.gov/gene/?term=RB11823 RB11826 RB11826 RB11826 6373298 6373600 + hypothetical protein gene gene6588 http://www.ncbi.nlm.nih.gov/gene/?term=RB11826 RB11827 RB11827 RB11827 6373669 6373818 + hypothetical protein gene gene6589 http://www.ncbi.nlm.nih.gov/gene/?term=RB11827 RB11828 RB11828 RB11828 6373827 6375767 + transmembrane protein best DB hits: BLAST: gb:AAF51529.1%3B (AE003590) CG18326 gene product [Drosophila%3B E%3D0.32 gene gene6590 http://www.ncbi.nlm.nih.gov/gene/?term=RB11828 RB1183 RB1183 RB1183 605059 605553 + hypothetical protein gene gene623 http://www.ncbi.nlm.nih.gov/gene/?term=RB1183 RB11831 RB11831 RB11831 6375848 6376720 - hypothetical protein gene gene6591 http://www.ncbi.nlm.nih.gov/gene/?term=RB11831 RB11832 RB11832 ndk ndk 6376760 6377218 - nucleoside diphosphate kinase (NDK) PMID: 9371463 PMID: 12001234 best DB hits: BLAST: gb:AAB90470.1%3B (AE001051) nucleoside diphosphate kinase (ndk)%3B E%3D1e-36 swissprot:O26358%3B NDK_METTH NUCLEOSIDE DIPHOSPHATE KINASE (NDK)%3B E%3D1e-35 pir:D75044%3B nucleoside diphosphate kinase (ndk) PAB1489 - Pyrococcus%3B E%3D2e-35 COG: AF0767%3B COG0105 Nucleoside diphosphate kinase%3B E%3D1e-37 PFAM: PF00334%3B Nucleoside diphosphate kinases%3B E%3D3.4e-61 gene gene6592 http://www.ncbi.nlm.nih.gov/gene/?term=RB11832 RB11837 RB11837 RB11837 6377295 6377732 - signal peptide gene gene6593 http://www.ncbi.nlm.nih.gov/gene/?term=RB11837 RB11839 RB11839 RB11839 6377722 6378222 - hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:A83254%3B hypothetical protein PA3130 [imported] - Pseudomonas%3B E%3D5e-08 swissprot:P77712%3B YBAW_ECOLI HYPOTHETICAL 15.1 KD PROTEIN IN%3B E%3D0.43 gb:AAG54793.1%3B AE005223_8 (AE005223) orf%2C hypothetical protein%3B E%3D0.46 COG: PA3130%3B COG0824 Predicted thioesterase%3B E%3D5e-09 gene gene6594 http://www.ncbi.nlm.nih.gov/gene/?term=RB11839 RB1184 RB1184 RB1184 605675 605971 - hypothetical protein gene gene624 http://www.ncbi.nlm.nih.gov/gene/?term=RB1184 RB11843 RB11843 RB11843 6378311 6378565 - hypothetical protein best DB hits: BLAST: pir:T16283%3B hypothetical protein F35H10.10 - Caenorhabditis elegans%3B E%3D0.58 gb:AAB51198.1%3B (U70870) CELF35-1 [Caenorhabditis elegans]%3B E%3D0.58 gene gene6595 http://www.ncbi.nlm.nih.gov/gene/?term=RB11843 RB11844 RB11844 RB11844 6378510 6378794 + hypothetical protein gene gene6596 http://www.ncbi.nlm.nih.gov/gene/?term=RB11844 RB11845 RB11845 RB11845 6378812 6379072 - hypothetical protein gene gene6597 http://www.ncbi.nlm.nih.gov/gene/?term=RB11845 RB11846 RB11846 RB11846 6379060 6379323 - hypothetical protein gene gene6598 http://www.ncbi.nlm.nih.gov/gene/?term=RB11846 RB11847 RB11847 msrA msrA 6379337 6380068 + peptide methionine sulfoxide reductase PMID: 10567266 best DB hits: BLAST: swissprot:Q9RTB6%3B MSRA_DEIRA PEPTIDE METHIONINE SULFOXIDE%3B E%3D3e-53 embl:CAC23591.1%3B (AL512971) peptide methionine sulfoxide%3B E%3D3e-45 gb:AAG19555.1%3B (AE005045) peptide methionine sulfoxide reductase%3B E%3D5e-43 COG: DR1849%3B COG0225 Peptide methionine sulfoxide reductase%3B E%3D3e-54 PFAM: PF01625%3B Peptide methionine sulfoxide reducta%3B E%3D5.8e-84 gene gene6599 http://www.ncbi.nlm.nih.gov/gene/?term=RB11847 RB11848 RB11848 RB11848 6380126 6381418 + hypothetical protein gene gene6600 http://www.ncbi.nlm.nih.gov/gene/?term=RB11848 RB1185 RB1185 RB1185 605975 606781 - transposase PMID: 1646375 best DB hits: BLAST: prf:2115270C%3B transposase [Weeksella zoohelcum]%3B E%3D1e-16 swissprot:P55631%3B Y4QJ_RHISN TRANSPOSASE Y4QJ -----%3B E%3D7e-11 swissprot:P24607%3B T801_PSESH TRANSPOSASE FOR INSERTION SEQUENCE%3B E%3D0.38 PFAM: PF01096%3B Transcription factor S-II (TFIIS)%3B E%3D0.19 gene gene625 http://www.ncbi.nlm.nih.gov/gene/?term=RB1185 RB11851 RB11851 hofF hofF 6381415 6382455 + general secretion pathway protein F PMID: 1640836 PMID: 93174466 best DB hits: BLAST: gb:AAC70103.1%3B (AF074613) type II secretion protein [Escherichia%3B E%3D3e-15 pir:C82327%3B MSHA biogenesis protein MshG VC0406 [imported] - Vibrio%3B E%3D9e-15 gb:AAA96018.1%3B (U35009) MshG [Vibrio cholerae]%3B E%3D3e-13 COG: VC0406%3B COG1459 General secretory pathway protein F%3B E%3D8e-16 PFAM: PF00482%3B Bacterial type II secretion system p%3B E%3D3.4e-05 gene gene6601 http://www.ncbi.nlm.nih.gov/gene/?term=RB11851 RB11853 RB11853 folE folE 6382501 6383190 + GTP cyclohydrolase I PMID: 1551827 PMID: 95352066 best DB hits: BLAST: swissprot:P19465%3B GCH1_BACSU GTP CYCLOHYDROLASE I (GTP-CH-I)%3B E%3D1e-59 ddbj:BAB05365.1%3B (AP001512) GTP cyclohydrolase I [Bacillus%3B E%3D1e-57 swissprot:O06273%3B GCH1_MYCTU GTP CYCLOHYDROLASE I (GTP-CH-I)%3B E%3D4e-53 COG: BS_mtrA%3B COG0302 GTP cyclohydrolase I%3B E%3D1e-60 PFAM: PF01227%3B GTP cyclohydrolase I%3B E%3D2.3e-110 gene gene6602 http://www.ncbi.nlm.nih.gov/gene/?term=RB11853 RB11854 RB11854 RB11854 6383171 6383404 - hypothetical protein gene gene6603 http://www.ncbi.nlm.nih.gov/gene/?term=RB11854 RB11855 RB11855 RB11855 6383460 6383765 - hypothetical protein gene gene6604 http://www.ncbi.nlm.nih.gov/gene/?term=RB11855 RB11856 RB11856 RB11856 6383865 6385799 - symporter ywcA PMID: 7934828 best DB hits: BLAST: swissprot:P39599%3B YWCA_BACSU HYPOTHETICAL 55.0 KD PROTEIN IN%3B E%3D3e-34 pir:F83241%3B probable sodium:solute symporter PA3234 [imported] -%3B E%3D1e-33 gb:AAK01502.1%3B (AF241171) amino acid transport protein%3B E%3D3e-32 COG: BS_ywcA%3B COG0591 Na+/proline%2C Na+/panthothenate symporters and%3B E%3D3e-35 yjcG%3B COG0591 Na+/proline%2C Na+/panthothenate symporters and related%3B E%3D7e-33 XF2251%3B COG0591 Na+/proline%2C Na+/panthothenate symporters and%3B E%3D2e-30 PFAM: PF00474%3B Sodium:solute symporter famil%3B E%3D3.8e-37 gene gene6605 http://www.ncbi.nlm.nih.gov/gene/?term=RB11856 RB11857 RB11857 RB11857 6385796 6386101 - hypothetical protein gene gene6606 http://www.ncbi.nlm.nih.gov/gene/?term=RB11857 RB11859 RB11859 phnP phnP 6386309 6387160 - phnP protein homolog- hydrolase PMID: 9403685 PMID: 1840580 best DB hits: BLAST: pir:D70166%3B phnP protein (phnP) homolog - Lyme disease spirochete%3B E%3D3e-47 pir:E71649%3B hypothetical protein RP869 - Rickettsia prowazekii%3B E%3D2e-35 ddbj:BAB02903.1%3B (AB028610) hydrolase-like protein [Arabidopsis%3B E%3D1e-31 COG: BB0533%3B COG1235 Metal-dependent hydrolases of the beta-lactamase%3B E%3D2e-48 PFAM: PF00753%3B Metallo-beta-lactamase superfamil%3B E%3D1.1e-06 gene gene6607 http://www.ncbi.nlm.nih.gov/gene/?term=RB11859 RB11862 RB11862 RB11862 6387157 6387327 - hypothetical protein gene gene6608 http://www.ncbi.nlm.nih.gov/gene/?term=RB11862 RB11863 RB11863 recA recA 6387411 6388538 - recombinase A catalyzes the hydrolysis of ATP in the presence of single-stranded DNA%2C the ATP-dependent uptake of single-stranded DNA by duplex DNA%2C and the ATP-dependent hybridization of homologous single-stranded DNAs gene gene6609 http://www.ncbi.nlm.nih.gov/gene/?term=RB11863 RB11867 RB11867 RB11867 6388765 6388905 + hypothetical protein gene gene6610 http://www.ncbi.nlm.nih.gov/gene/?term=RB11867 RB11868 RB11868 RB11868 6388940 6389680 - hypothetical protein gene gene6611 http://www.ncbi.nlm.nih.gov/gene/?term=RB11868 RB11869 RB11869 RB11869 6389743 6389886 - hypothetical protein gene gene6612 http://www.ncbi.nlm.nih.gov/gene/?term=RB11869 RB11870 RB11870 RB11870 6389978 6391042 + hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:F83601%3B hypothetical protein PA0356 [imported] - Pseudomonas%3B E%3D3e-15 pir:H82508%3B conserved hypothetical protein VCA0034 [imported] -%3B E%3D3e-11 pir:G72324%3B hypothetical protein - Thermotoga maritima (strain MSB8)%3B E%3D1e-10 COG: PA0356%3B COG1639 Uncharacterized BCR%3B E%3D3e-16 gene gene6613 http://www.ncbi.nlm.nih.gov/gene/?term=RB11870 RB11875 RB11875 RB11875 6391049 6392338 + hypothetical protein gene gene6614 http://www.ncbi.nlm.nih.gov/gene/?term=RB11875 RB11876 RB11876 dsbB dsbB 6392375 6395116 + thiol:disulfide interchange protein DsbD PMID: 7628442 PMID: 7542800 best DB hits: BLAST: pir:H72034%3B thiol-disulfide interchange protein dsbD [imported] -%3B E%3D7e-48 pir:G81503%3B thiol-disulfide interchange protein DSbD homolog CP1086%3B E%3D7e-48 pir:C81653%3B probable thiol-disulfide interchange protein dsbD%3B E%3D8e-47 COG: CPn0786%3B COG0526 Thiol-disulfide isomerase and thioredoxins%3B E%3D6e-49 BH1194%3B COG0785 Cytochrome c biogenesis protein%3B E%3D0.002 gene gene6615 http://www.ncbi.nlm.nih.gov/gene/?term=RB11876 RB11877 RB11877 trmE trmE 6395113 6396510 + tRNA modification GTPase TrmE in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine%2C which is found in the wobble position of some tRNAs and affects ribosomal frameshifting%3B shows potassium-dependent dimerization and GTP hydrolysis%3B also involved in regulation of glutamate-dependent acid resistance and activation of gadE gene gene6616 http://www.ncbi.nlm.nih.gov/gene/?term=RB11877 RB11878 RB11878 msrA msrA 6396598 6397104 + methionine sulfoxide reductase A this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form%3B provides protection against oxidative stress gene gene6617 http://www.ncbi.nlm.nih.gov/gene/?term=RB11878 RB11879 RB11879 RB11879 6397196 6398572 - periplasmic serine proteinase PMID: 3057437 PMID: 10761919 best DB hits: BLAST: pir:B81914%3B probable periplasmic serine proteinase (EC 3.4.21.-)%3B E%3D2e-47 gb:AAK01318.1%3B (AF190580) MucD [Pseudomonas syringae pv.%3B E%3D8e-47 pir:F83550%3B serine proteinase MucD precursor PA0766 [imported] -%3B E%3D1e-46 COG: NMB0532%3B COG0265 Trypsin-like serine proteases%2C typically%3B E%3D6e-48 RP124%3B COG0265 Trypsin-like serine proteases%2C typically periplasmic%2C%3B E%3D7e-45 CPn0979%3B COG0265 Trypsin-like serine proteases%2C typically%3B E%3D3e-44 PFAM: PF00089%3B Trypsin%3B E%3D1.9e-16 PF00595%3B PDZ domain (Also known as DHR or GL%3B E%3D3.1e-09 gene gene6618 http://www.ncbi.nlm.nih.gov/gene/?term=RB11879 RB11882 RB11882 cdd cdd 6398667 6399167 + cytidine deaminase PMID: 2526291 PMID: 8969508 PMID: 9384377 best DB hits: BLAST: pir:PC1224%3B cytidine deaminase (EC 3.5.4.5) - human (fragment)%3B E%3D3e-25 gb:AAD15828.1%3B (AF061658) cytidine deaminase [Homo sapiens]%3B E%3D3e-25 embl:CAB51906.1%3B (AJ237978) cytidine deaminase [Bacillus%3B E%3D6e-25 COG: BS_cdd%3B COG0295 Cytidine deaminase%3B E%3D8e-26 PFAM: PF00383%3B Cytidine and deoxycytidylate de%3B E%3D1.3e-23 gene gene6619 http://www.ncbi.nlm.nih.gov/gene/?term=RB11882 RB11884 RB11884 RB11884 6399411 6400817 - hypothetical protein gene gene6620 http://www.ncbi.nlm.nih.gov/gene/?term=RB11884 RB11886 RB11886 RB11886 6400881 6403682 - signal peptide gene gene6621 http://www.ncbi.nlm.nih.gov/gene/?term=RB11886 RB1189 RB1189 RB1189 606838 607128 + transposase A PMID: 2824781 best DB hits: BLAST: gb:AAG58100.1%3B AE005527_3 (AE005527) unknown protein encoded by%3B E%3D0.002 gb:AAG53987.1%3B AF327445_1 (AF327445) transposase A%3B E%3D0.003 gb:AAF28119.1%3B AF153317_15 (AF153317) InsA [Shigella%3B E%3D0.007 COG: PA1937%3B COG2963 Transposase%3B E%3D0.004 PFAM: PF01381%3B Helix-turn-helix%3B E%3D0.53 PF01527%3B Transposase%3B E%3D6.1e-18 gene gene626 http://www.ncbi.nlm.nih.gov/gene/?term=RB1189 RB11891 RB11891 RB11891 6403762 6405420 - hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:G83561%3B hypothetical protein PA0670 [imported] - Pseudomonas%3B E%3D4e-07 gene gene6622 http://www.ncbi.nlm.nih.gov/gene/?term=RB11891 RB11894 RB11894 RB11894 6405719 6407104 - hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:H83561%3B hypothetical protein PA0671 [imported] - Pseudomonas%3B E%3D5e-05 gene gene6623 http://www.ncbi.nlm.nih.gov/gene/?term=RB11894 RB11897 RB11897 RB11897 6407046 6407807 + hypothetical protein gene gene6624 http://www.ncbi.nlm.nih.gov/gene/?term=RB11897 RB11898 RB11898 RB11898 6407203 6407562 + hypothetical protein PMID: 11679669 best DB hits: PFAM: PF02370%3B M protein repeat%3B E%3D0.41 gene gene6625 http://www.ncbi.nlm.nih.gov/gene/?term=RB11898 RB1190 RB1190 RB1190 607131 608009 + transposase PMID: 7496528 best DB hits: BLAST: gb:AAA88919.1%3B (U13013) ORFB [Leptospira interrogans]%3B E%3D3e-47 gb:AAA88916.1%3B (U13012) ORFB [Leptospira interrogans]%3B E%3D1e-46 gb:AAC05649.1%3B (AF038931) probable transposase-related protein%3B E%3D1e-45 COG: DRB0019.2%3B COG2801 transposase%3B E%3D1e-35 PFAM: PF00665%3B Integrase core domain%3B E%3D4.8e-40 gene gene627 http://www.ncbi.nlm.nih.gov/gene/?term=RB1190 RB11900 RB11900 RB11900 6407547 6407867 - hypothetical protein gene gene6626 http://www.ncbi.nlm.nih.gov/gene/?term=RB11900 RB11902 RB11902 RB11902 6407792 6408118 + hypothetical protein best DB hits: BLAST: swissprot:P49453%3B CENC_SHEEP CENTROMERE PROTEIN C (CENP-C)%3B E%3D0.84 gene gene6627 http://www.ncbi.nlm.nih.gov/gene/?term=RB11902 RB11904 RB11904 RB11904 6408267 6409175 + hypothetical protein gene gene6628 http://www.ncbi.nlm.nih.gov/gene/?term=RB11904 RB11906 RB11906 RB11906 6409273 6409737 + acetyltransferase PMID: 11078650 best DB hits: BLAST: gb:AAF64052.1%3B AF242367_1 (AF242367) hypothetical%3B E%3D1e-10 embl:CAA63806.1%3B (X93605) hypothetical protein [Zymomonas%3B E%3D4e-08 pir:D72219%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D5e-07 COG: TM1720%3B COG0454 Histone acetyltransferase HPA2 and related%3B E%3D4e-08 PFAM: PF00583%3B Acetyltransferase (GNAT) family%3B E%3D4.9e-11 gene gene6629 http://www.ncbi.nlm.nih.gov/gene/?term=RB11906 RB11907 RB11907 RB11907 6409724 6410200 + hypothetical protein best DB hits: BLAST: gb:AAF00629.1%3B AC009540_6 (AC009540) unknown protein [Arabidopsis%3B E%3D1e-04 gb:AAF61443.1%3B AF139187_1 (AF139187) root border cell-specific%3B E%3D5e-04 pir:E83098%3B hypothetical protein PA4388 [imported] - Pseudomonas%3B E%3D0.020 COG: PA4388%3B COG0748 Uncharacterized BCR%3B E%3D0.002 gene gene6630 http://www.ncbi.nlm.nih.gov/gene/?term=RB11907 RB11909 RB11909 RB11909 6410157 6410663 + hypothetical protein best DB hits: PFAM: PF01330%3B RuvA N terminal domain%3B E%3D0.83 gene gene6631 http://www.ncbi.nlm.nih.gov/gene/?term=RB11909 RB1191 RB1191 RB1191 608055 608435 - transposase best DB hits: BLAST: swissprot:P55631%3B Y4QJ_RHISN TRANSPOSASE Y4QJ -----%3B E%3D4e-14 prf:2115270C%3B transposase [Weeksella zoohelcum]%3B E%3D2e-10 pir:S49612%3B transposase - Escherichia coli%3B E%3D0.001 gene gene628 http://www.ncbi.nlm.nih.gov/gene/?term=RB1191 RB11913 RB11913 moxR moxR 6410718 6411734 + methanol dehydrogenase regulatory protein PMID: 1657871 PMID: 10086841 best DB hits: BLAST: pir:H72289%3B hypothetical protein TM1132 - Thermotoga maritima%3B E%3D5e-70 ddbj:BAB04323.1%3B (AP001509) methanol dehydrogenase regulatory%3B E%3D4e-69 pir:S75782%3B methanol dehydrogenase regulatory protein -%3B E%3D3e-67 COG: TM1132%3B COG0714 MoxR-like ATPases%3B E%3D5e-71 PFAM: PF00004%3B ATPase associated with va%3B E%3D0.00074 PF01506%3B Hepatitis C virus non-structural%3B E%3D0.69 PF01078%3B Magnesium chelatase%2C subunit Chl%3B E%3D8.1e-11 gene gene6632 http://www.ncbi.nlm.nih.gov/gene/?term=RB11913 RB11914 RB11914 RB11914 6411706 6413076 + hypothetical protein best DB hits: BLAST: pir:A75012%3B conserved hypothetical protein PAB1277 - Pyrococcus%3B E%3D2e-04 pir:S75346%3B hypothetical protein slr2013 - Synechocystis sp. (strain%3B E%3D0.001 pir:H71125%3B hypothetical protein PH0774 - Pyrococcus horikoshii%3B E%3D0.014 COG: PAB1277%3B COG1721 Uncharacterized ACR%3B E%3D2e-05 PFAM: PF01882%3B Protein of unknown function DUF58%3B E%3D2e-08 gene gene6633 http://www.ncbi.nlm.nih.gov/gene/?term=RB11914 RB11916 RB11916 RB11916 6413073 6415331 + protease PMID: 99009353 PMID: 10086841 best DB hits: BLAST: pir:F70464%3B hypothetical protein aq_1912 - Aquifex aeolicus -----%3B E%3D1e-13 ddbj:BAB04325.1%3B (AP001509) BH0606~~unknown conserved protein%3B E%3D4e-10 pir:F83287%3B hypothetical protein PA2873 [imported] - Pseudomonas%3B E%3D3e-07 COG: aq_1912%3B COG1305 transglutaminases%2C cysteine%3B E%3D1e-14 PFAM: PF01841%3B Transglutaminase-like superfam%3B E%3D7e-11 gene gene6634 http://www.ncbi.nlm.nih.gov/gene/?term=RB11916 RB11918 RB11918 RB11918 6415297 6415701 - hypothetical protein best DB hits: BLAST: pir:E81162%3B conserved hypothetical protein NMB0742 [imported] -%3B E%3D0.034 pir:B81942%3B hypothetical protein NMA0955 [imported] - Neisseria%3B E%3D0.034 gb:AAG23848.1%3B (AF129396) unknown [Pseudomonas resinovorans]%3B E%3D0.11 gene gene6635 http://www.ncbi.nlm.nih.gov/gene/?term=RB11918 RB11919 RB11919 ilvD ilvD 6415698 6417713 - hypothetical protein PMID: 8325851 PMID: 7771772 best DB hits: BLAST: swissprot:P77596%3B YAGF_ECOLI HYPOTHETICAL 69.4 KD PROTEIN IN%3B E%3D0.0 swissprot:P39358%3B YJHG_ECOLI HYPOTHETICAL 70.0 KD PROTEIN IN%3B E%3D0.0 pir:S56522%3B hypothetical protein f655 - Escherichia coli -----%3B E%3D0.0 COG: yagF%3B COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase%3B E%3D0.0 MJ1276%3B COG0129 Dihydroxyacid dehydratase/phosphogluconate%3B E%3D5e-48 ilvD%3B COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase%3B E%3D2e-34 PFAM: PF00920%3B Dehydratase%3B E%3D3.6e-208 gene gene6636 http://www.ncbi.nlm.nih.gov/gene/?term=RB11919 RB1192 RB1192 RB1192 608450 609496 - integrase PMID: 9082984 best DB hits: BLAST: swissprot:P55632%3B Y4QK_RHISN INTEGRASERECOMBINASE Y4QK%3B E%3D5e-39 swissprot:P55429%3B Y4EF_RHISN INTEGRASERECOMBINASE Y4EF%3B E%3D1e-32 prf:2115270D%3B integrase [Weeksella zoohelcum]%3B E%3D1e-22 COG: PAB0255%3B COG0582 Integrase%3B E%3D3e-21 PFAM: PF02899%3B Phage integrase%2C N-terminal S%3B E%3D0.087 PF00589%3B Phage integrase%3B E%3D8e-31 gene gene629 http://www.ncbi.nlm.nih.gov/gene/?term=RB1192 RB11920 RB11920 RB11920 6417694 6418443 - Zn-dependent protease PMID: 10086841 best DB hits: BLAST: ddbj:BAB04716.1%3B (AP001510) BH0997~~unknown conserved protein%3B E%3D2e-44 ddbj:BAB05396.1%3B (AP001512) BH1677~~unknown conserved protein%3B E%3D2e-41 pir:F70011%3B hypothetical protein yugP - Bacillus subtilis -----%3B E%3D8e-39 COG: BH0997%3B COG2738 Predicted Zn-dependent protease%3B E%3D2e-45 gene gene6637 http://www.ncbi.nlm.nih.gov/gene/?term=RB11920 RB11922 RB11922 RB11922 6418585 6419037 - hypothetical protein PMID: 10086841 best DB hits: BLAST: ddbj:BAB06330.1%3B (AP001516) BH2611~~unknown conserved protein%3B E%3D4e-08 pir:F69930%3B conserved hypothetical protein yozB - Bacillus subtilis%3B E%3D1e-07 swissprot:Q04453%3B YCT1_BACFI HYPOTHETICAL 21.0 KD PROTEIN IN CTAF%3B E%3D8e-07 COG: BH2611%3B COG2322 Predicted membrane protein%3B E%3D4e-09 gene gene6638 http://www.ncbi.nlm.nih.gov/gene/?term=RB11922 RB11923 RB11923 RB11923 6419041 6419736 - hypothetical protein PMID: 1944230 PMID: 7592491 best DB hits: BLAST: ddbj:BAB07054.1%3B (AP001518) BH3335~~unknown conserved protein%3B E%3D6e-19 swissprot:P54178%3B YPMQ_BACSU HYPOTHETICAL 21.6 KDA PROTEIN IN ILVA%3B E%3D1e-12 ddbj:BAB06623.1%3B (AP001517) BH2904~~unknown conserved protein%3B E%3D2e-12 COG: BH3335%3B COG1999 Uncharacterized protein SCO1/SenC/PrrC%2C involved in%3B E%3D6e-20 BH2868%3B COG0526 Thiol-disulfide isomerase and thioredoxins%3B E%3D1e-04 DR1886%3B COG1999 Uncharacterized protein SCO1/SenC/PrrC%2C involved in%3B E%3D2e-04 PFAM: PF02630%3B SCO1/SenC%3B E%3D1.7e-14 gene gene6639 http://www.ncbi.nlm.nih.gov/gene/?term=RB11923 RB11925 RB11925 RB11925 6419855 6420085 + hypothetical protein gene gene6640 http://www.ncbi.nlm.nih.gov/gene/?term=RB11925 RB11927 RB11927 RB11927 6420067 6421170 + lipase/esterase PMID: 10567266 best DB hits: BLAST: pir:H70731%3B probable esterase - Mycobacterium tuberculosis (strain%3B E%3D2e-18 pir:B70961%3B probable esterase - Mycobacterium tuberculosis (strain%3B E%3D5e-18 pir:B75555%3B probable lipaseesterase - Deinococcus radiodurans%3B E%3D5e-16 COG: Rv2284%3B COG0657 Acetyl esterase%3B E%3D2e-19 APE2441%3B COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases%3B E%3D7e-05 BS_pnbA%3B COG2272 Carboxylesterase type B%3B E%3D1e-04 gene gene6641 http://www.ncbi.nlm.nih.gov/gene/?term=RB11927 RB11928 RB11928 RB11928 6421182 6422414 - hypothetical protein gene gene6642 http://www.ncbi.nlm.nih.gov/gene/?term=RB11928 RB11929 RB11929 RB11929 6422447 6423328 - hypothetical protein PMID: 9371463 PMID: 1924314 best DB hits: BLAST: pir:B69012%3B probable membrane protein MTH1092 - Methanobacterium%3B E%3D7e-22 gb:AAB89369.1%3B (AE000972) daunorubicin resistance membrane%3B E%3D5e-14 pir:D75108%3B daunorubicin resistance membrane protein (drrb) PAB1924%3B E%3D9e-14 COG: MTH1092%3B COG0842 Permease component of an ABC-transporter%3B E%3D6e-23 gene gene6643 http://www.ncbi.nlm.nih.gov/gene/?term=RB11929 RB1193 RB1193 RB1193 609563 609694 - hypothetical protein gene gene630 http://www.ncbi.nlm.nih.gov/gene/?term=RB1193 RB11930 RB11930 RB11930 6423325 6424299 - ABC transporter ATP-binding protein PMID: 8843436 best DB hits: BLAST: embl:CAC08315.1%3B (AL392149) ABC transport system%3B E%3D7e-48 pir:C69012%3B ABC transporter (ATP-binding%2C daunorubicin resistance) -%3B E%3D7e-44 pir:S32908%3B hypothetical protein 4 - Streptomyces antibioticus%3B E%3D4e-43 COG: MTH1093%3B COG1131 ABC-type multidrug transport system%2C ATPase%3B E%3D7e-45 BH1054_2%3B COG0842 Permease component of an ABC-transporter%3B E%3D7e-34 ybhF%3B COG1131 ABC-type multidrug transport system%2C ATPase component%3B E%3D9e-34 PFAM: PF01078%3B Magnesium chelatase%2C subunit Ch%3B E%3D0.047 PF00005%3B ABC transporter%3B E%3D8.8e-55 gene gene6644 http://www.ncbi.nlm.nih.gov/gene/?term=RB11930 RB11931 RB11931 cyoE cyoE 6424310 6425479 - protoheme IX farnesyltransferase PMID: 8253713 PMID: 9537320 best DB hits: BLAST: gb:AAH00060.1%3B AAH00060 (BC000060) Unknown (protein for MGC:2077)%3B E%3D9e-25 gb:AAF52915.1%3B (AE003628) CG5037 gene product [Drosophila%3B E%3D2e-24 gb:AAA21148.1%3B (U09466) heme A:farnesyltransferase [Homo sapiens]%3B E%3D4e-24 COG: YPL172c%3B COG0109 Polyprenyltransferase (cytochrome oxidase assembly%3B E%3D9e-23 VNG0666G_2%3B COG0109 Polyprenyltransferase (cytochrome oxidase%3B E%3D8e-11 AF2036%3B COG0109 Polyprenyltransferase (cytochrome oxidase assembly%3B E%3D4e-09 PFAM: PF01943%3B Polysaccharide biosynthesis pro%3B E%3D0.44 PF01040%3B UbiA prenyltransferase%3B E%3D1.5e-31 gene gene6645 http://www.ncbi.nlm.nih.gov/gene/?term=RB11931 RB11934 RB11934 RB11934 6425493 6426563 - hypothetical protein PMID: 8905231 best DB hits: BLAST: pir:S75621%3B hypothetical protein sll1898 - Synechocystis sp. (strain%3B E%3D7e-06 pir:D70314%3B heme O oxygenase - Aquifex aeolicus ----- gb:%3B E%3D0.14 COG: sll1898%3B COG1612 Uncharacterized protein required for cytochrome%3B E%3D7e-07 PFAM: PF02628%3B Cytochrome oxidase assembly protei%3B E%3D0.0068 gene gene6646 http://www.ncbi.nlm.nih.gov/gene/?term=RB11934 RB11936 RB11936 RB11936 6426560 6426736 - signal peptide gene gene6647 http://www.ncbi.nlm.nih.gov/gene/?term=RB11936 RB11937 RB11937 pbrT pbrT 6426733 6428166 - cytochrome c PMID: 21429239 best DB hits: BLAST: embl:CAC28871.1%3B (AJ278984) PbrT protein [Ralstonia%3B E%3D0.003 pir:B82990%3B hypothetical protein PA5248 [imported] - Pseudomonas%3B E%3D0.017 swissprot:Q04441%3B COX2_BACFI CYTOCHROME C OXIDASE POLYPEPTIDE II%3B E%3D0.74 COG: PA5248_1%3B COG2010 Cytochrome c%2C mono- and diheme variants%3B E%3D0.003 PFAM: PF00034%3B Cytochrome c%3B E%3D0.23 gene gene6648 http://www.ncbi.nlm.nih.gov/gene/?term=RB11937 RB11938 RB11938 RB11938 6427959 6428474 - hypothetical protein gene gene6649 http://www.ncbi.nlm.nih.gov/gene/?term=RB11938 RB11939 RB11939 RB11939 6428116 6428586 + hypothetical protein gene gene6650 http://www.ncbi.nlm.nih.gov/gene/?term=RB11939 RB1194 RB1194 RB1194 609661 610227 - hypothetical protein gene gene631 http://www.ncbi.nlm.nih.gov/gene/?term=RB1194 RB11941 RB11941 RB11941 6428692 6429975 - glycosyl transferase PMID: 8905231 best DB hits: BLAST: pir:A75561%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D6e-16 embl:CAA66627.1%3B (X97985) ORF4 [Staphylococcus aureus]%3B E%3D1e-13 pir:S76793%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D3e-11 COG: DR0089%3B COG0463 Glycosyltransferases involved in cell wall%3B E%3D6e-17 MTH548%3B COG0784 CheY-like receiver domains%3B E%3D1e-06 PAB1246%3B COG1215 Glycosyltransferases%2C probably involved in cell%3B E%3D2e-06 PFAM: PF00535%3B Glycosyl transferase%3B E%3D3.5e-23 gene gene6651 http://www.ncbi.nlm.nih.gov/gene/?term=RB11941 RB11942 RB11942 RB11942 6429924 6430775 - acyltransferase PMID: 7588751 best DB hits: BLAST: pir:S68196%3B hypothetical protein 9 - Myxococcus xanthus -----%3B E%3D5e-06 PFAM: PF01553%3B Acyltransferase%3B E%3D0.013 gene gene6652 http://www.ncbi.nlm.nih.gov/gene/?term=RB11942 RB11943 RB11943 RB11943 6430772 6432376 - phytoene dehydrogenase PMID: 7588751 PMID: 2263648 best DB hits: BLAST: swissprot:P54979%3B CRTJ_MYXXA PHYTOENE DEHYDROGENASE (PHYTOENE%3B E%3D2e-50 embl:CAA66626.1%3B (X97985) ORF3 [Staphylococcus aureus]%3B E%3D2e-48 pir:T31463%3B probable diapophytoene dehydrogenase crtN -%3B E%3D9e-47 COG: VNG1684G%3B COG1233 Phytoene dehydrogenase and related proteins%3B E%3D4e-41 PFAM: PF01266%3B D-amino acid oxidase%3B E%3D7.4e-05 PF01494%3B FAD binding domain%3B E%3D1.7e-06 PF02254%3B KTN NAD-binding domain%3B E%3D0.026 gene gene6653 http://www.ncbi.nlm.nih.gov/gene/?term=RB11943 RB11945 RB11945 RB11945 6432441 6434111 - aldehyde dehydrogenase PMID: 7934828 PMID: 9384377 PMID: 89229122 best DB hits: BLAST: pir:T03560%3B probable aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) -%3B E%3D1e-31 pir:D83600%3B probable aldehyde dehydrogenase PA0366 [imported] -%3B E%3D3e-31 gb:AAG20575.1%3B (AE005128) aldehyde dehydrogenase (retinol)%3B AldY1%3B E%3D5e-31 COG: PA0366%3B COG1012 NAD-dependent aldehyde dehydrogenases%3B E%3D3e-32 PFAM: PF00171%3B Aldehyde dehydrogenase%3B E%3D2.5e-20 gene gene6654 http://www.ncbi.nlm.nih.gov/gene/?term=RB11945 RB11946 RB11946 RB11946 6433969 6434574 + NAD(P)H-flavin oxidoreductase best DB hits: BLAST: ddbj:BAB13707.1%3B (AB040150) thermophilic NAD(P)H-flavin%3B E%3D2e-18 pir:B72384%3B bacterioferritin comigratory proteinNADH dehydrogenase%3B E%3D5e-08 swissprot:O26223%3B Y120_METTH NADH DEHYDROGENASENAD(P)H%3B E%3D0.003 COG: TM0386_2%3B COG0778 Nitroreductase%3B E%3D5e-09 PFAM: PF00881%3B Nitroreductase%3B E%3D3.3e-13 gene gene6655 http://www.ncbi.nlm.nih.gov/gene/?term=RB11946 RB11947 RB11947 atoC atoC 6434543 6435730 + acetoacetate metabolism regulatory protein atoC PMID: 9278503 PMID: 9097040 PMID: 8346225 best DB hits: BLAST: pir:F71315%3B probable response regulatory protein (atoC) - syphilis%3B E%3D1e-60 swissprot:P09570%3B NIFA_AZOVI NIF-SPECIFIC REGULATORY PROTEIN%3B E%3D2e-60 pir:A48291%3B ornithine decarboxylase inhibitor - Escherichia coli%3B E%3D3e-60 COG: TP0519%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D1e-61 aq_218_2%3B COG1221 NtrC family transcriptional regulators%2C ATPase%3B E%3D2e-59 hydG%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D9e-58 PFAM: PF00004%3B ATPase associated with variou%3B E%3D0.0057 PF00158%3B Sigma-54 interaction domain%3B E%3D6.7e-136 gene gene6656 http://www.ncbi.nlm.nih.gov/gene/?term=RB11947 RB11948 RB11948 RB11948 6435752 6437896 - secreted protein- xanthan lyase related PMID: 97000351 best DB hits: BLAST: ddbj:BAB21059.1%3B (AB037178) xanthan lyase [Bacillus sp. GL1]%3B E%3D2e-08 embl:CAB62685.1%3B (AL133422) membrane protein.%3B E%3D3e-08 embl:CAB62757.1%3B (AL133424) secreted protein%3B E%3D8e-08 PFAM: PF00070%3B Pyridine nucleotide-disulphide%3B E%3D0.00038 gene gene6657 http://www.ncbi.nlm.nih.gov/gene/?term=RB11948 RB11951 RB11951 RB11951 6437923 6438510 + hypothetical protein gene gene6658 http://www.ncbi.nlm.nih.gov/gene/?term=RB11951 RB11952 RB11952 RB11952 6438043 6438438 - signal peptide gene gene6659 http://www.ncbi.nlm.nih.gov/gene/?term=RB11952 RB11955 RB11955 RB11955 6438513 6442016 - serine/threonine-protein kinase pknB PMID: 11410353 PMID: 11856348 PMID: 8969512 PMID: 11234002 best DB hits: BLAST: pir:H69878%3B probable protein kinase (EC 2.7.1.-) yloP - Bacillus%3B E%3D1e-44 swissprot:P54744%3B PKNB_MYCLE SERINETHREONINE-PROTEIN%3B E%3D9e-44 swissprot:P71584%3B PKNB_MYCTU SERINETHREONINE-PROTEIN%3B E%3D1e-42 COG: BS_yloP_1%3B COG0515 Serine/threonine protein kinases%3B E%3D1e-45 PFAM: PF00069%3B Protein kinase domain%3B E%3D9.2e-49 gene gene6660 http://www.ncbi.nlm.nih.gov/gene/?term=RB11955 RB11958 RB11958 RB11958 6442110 6443018 - hypothetical protein PMID: 10567266 best DB hits: BLAST: embl:CAB93400.1%3B (AL357524) conserved hypothetical protein%3B E%3D2e-41 pir:C75447%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D2e-38 ddbj:BAB06408.1%3B (AP001516) BH2689~~unknown conserved protein in%3B E%3D1e-29 COG: DR1011%3B COG2107 Predicted periplasmic solute-binding protein%3B E%3D1e-39 PFAM: PF02642%3B Uncharacterized ACR%2C COG2107%3B E%3D5.8e-43 gene gene6661 http://www.ncbi.nlm.nih.gov/gene/?term=RB11958 RB11959 RB11959 dapB dapB 6443097 6443939 - 4-hydroxy-tetrahydrodipicolinate reductase PMID: 8990304 PMID: 7893645 best DB hits: BLAST: swissprot:Q52419%3B DAPB_PSESZ DIHYDRODIPICOLINATE REDUCTASE (DHPR)%3B E%3D7e-46 pir:C82080%3B dihydrodipicolinate reductase VC2391 [imported] - Vibrio%3B E%3D2e-44 swissprot:P38103%3B DAPB_PSEAE DIHYDRODIPICOLINATE REDUCTASE (DHPR)%3B E%3D4e-43 COG: VC2391%3B COG0289 Dihydrodipicolinate reductase%3B E%3D2e-45 PFAM: PF01113%3B Dihydrodipicolinate reductase%3B E%3D2e-45 gene gene6662 http://www.ncbi.nlm.nih.gov/gene/?term=RB11959 RB1196 RB1196 RB1196 610360 610857 + ribosomal-protein-alanine acetyltransferase PMID: 11792869 best DB hits: BLAST: pir:S56597%3B peptide N-acetyltransferase (EC 2.3.1.-) rimI -%3B E%3D0.018 swissprot:P09453%3B RIMI_ECOLI RIBOSOMAL-PROTEIN-ALANINE%3B E%3D0.018 pir:G69233%3B N-terminal acetyltransferase complex%2C subunit ARD1 -%3B E%3D0.043 COG: rimI%3B COG0456 Acetyltransferases%3B E%3D0.002 DR0188%3B COG0454 Histone acetyltransferase HPA2 and related%3B E%3D0.007 PFAM: PF00583%3B Acetyltransferase (GNAT) family%3B E%3D1e-16 gene gene632 http://www.ncbi.nlm.nih.gov/gene/?term=RB1196 RB11960 RB11960 RB11960 6443943 6444077 + hypothetical protein gene gene6663 http://www.ncbi.nlm.nih.gov/gene/?term=RB11960 RB11961 RB11961 RB11961 6444074 6444778 + competence protein ComEA PMID: 10360571 PMID: 95286482 best DB hits: BLAST: gb:AAG18338.1%3B AF268317_1 (AF268317) ComE [Neisseria gonorrhoeae]%3B E%3D2e-06 pir:F72301%3B comEA protein-related protein - Thermotoga maritima%3B E%3D2e-06 embl:CAB44958.1%3B (AJ242837) ComEA protein [Neisseria%3B E%3D3e-06 COG: TM1052%3B COG1555 DNA uptake protein and related DNA-binding proteins%3B E%3D2e-07 slr0197_2%3B COG1555 DNA uptake protein and related DNA-binding%3B E%3D7e-05 VC1917%3B COG1555 DNA uptake protein and related DNA-binding proteins%3B E%3D1e-04 PFAM: PF00633%3B Helix-hairpin-helix motif.%3B E%3D0.4 gene gene6664 http://www.ncbi.nlm.nih.gov/gene/?term=RB11961 RB11964 RB11964 RB11964 6444840 6445160 + component of ring hydroxylating complex PMID: 98263372 best DB hits: BLAST: embl:CAC11346.1%3B (AL445063) conserved hypothetical protein%3B E%3D4e-14 pir:F72369%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D1e-12 pir:A71457%3B hypothetical protein PH0311 - Pyrococcus horikoshii%3B E%3D5e-12 COG: Ta0200%3B COG2151 aromatic ring hydroxylating enzyme%3B E%3D4e-15 slr0067%3B COG0489 ATPases involved in chromosome partitioning%3B E%3D0.007 PFAM: PF01883%3B Domain of unknown function DUF59%3B E%3D1.4e-19 gene gene6665 http://www.ncbi.nlm.nih.gov/gene/?term=RB11964 RB11967 RB11967 tesB tesB 6445166 6445558 + acyl-CoA thioesterase PMID: 10876240 PMID: 3294803 PMID: 9278503 PMID: 8905232 PMID: 11206551 PMID: 11258796 PMID: 10493123 best DB hits: BLAST: swissprot:P08999%3B YBGC_ECOLI 15.6 KDA PROTEIN IN CYDB-TOLQ%3B E%3D2e-11 pir:D82152%3B conserved hypothetical protein VC1840 [imported] -%3B E%3D4e-11 gb:AAK03055.1%3B (AE006136) unknown [Pasteurella multocida]%3B E%3D8e-11 COG: ybgC%3B COG0824 Predicted thioesterase%3B E%3D2e-12 gene gene6666 http://www.ncbi.nlm.nih.gov/gene/?term=RB11967 RB11969 RB11969 RB11969 6445572 6446717 + hypothetical protein PMID: 9389475 best DB hits: BLAST: pir:D69211%3B conserved hypothetical protein MTH835 - Methanobacterium%3B E%3D4e-09 pir:G64401%3B hypothetical protein MJ0815 - Methanococcus jannaschii%3B E%3D7e-06 gb:AAB90178.1%3B (AE001029) conserved hypothetical protein%3B E%3D5e-05 COG: MTH835%3B COG1821 Predicted ATP-utilizing enzymes of ATP-grasp%3B E%3D4e-10 PFAM: PF02655%3B Domain of unknown function DU%3B E%3D5.6e-08 gene gene6667 http://www.ncbi.nlm.nih.gov/gene/?term=RB11969 RB11973 RB11973 RB11973 6446722 6447543 - hypothetical protein gene gene6668 http://www.ncbi.nlm.nih.gov/gene/?term=RB11973 RB11975 RB11975 RB11975 6447801 6455216 + polyketide synthase PMID: 10662695 PMID: 10649995 best DB hits: BLAST: gb:AAF26921.1%3B AF210843_18 (AF210843) polyketide synthase [Sorangium%3B E%3D0.0 gb:AAF26923.1%3B AF210843_20 (AF210843) polyketide synthase [Sorangium%3B E%3D0.0 gb:AAF62883.1%3B AF217189_6 (AF217189) epoD [Sorangium cellulosum]%3B E%3D0.0 COG: BS_fabD%3B COG0331 (acyl-carrier-protein) S-malonyltransferase%3B E%3D7e-31 PA2965%3B COG0304 3-oxoacyl-(acyl-carrier-protein) synthase I%3B E%3D3e-28 PA5234%3B COG0604 NADPH:quinone reductase and related Zn-dependent%3B E%3D2e-27 PFAM: PF00108%3B Thiolase%2C N-terminal domain%3B E%3D7.3e-07 PF00109%3B Beta-ketoacyl synthase%2C N-ter%3B E%3D1e-125 PF02801%3B Beta-ketoacyl synthase%2C C-ter%3B E%3D2.5e-77 gene gene6669 http://www.ncbi.nlm.nih.gov/gene/?term=RB11975 RB11976 RB11976 RB11976 6455283 6455996 - two-component response regulator PMID: 10984043 best DB hits: BLAST: pir:B83500%3B probable two-component response regulator PA1157%3B E%3D3e-51 pir:F82213%3B DNA-binding response regulator VC1320 [imported] -%3B E%3D4e-41 pir:C83420%3B probable two-component response regulator PA1799%3B E%3D3e-39 COG: PA1157%3B COG0745 Response regulators consisting of a CheY-like%3B E%3D3e-52 rstA%3B COG0745 Response regulators consisting of a CheY-like receiver%3B E%3D5e-34 BS_yclJ%3B COG0745 Response regulators consisting of a CheY-like%3B E%3D8e-34 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D4e-27 PF00486%3B Transcriptional regulatory prote%3B E%3D2.7e-17 gene gene6670 http://www.ncbi.nlm.nih.gov/gene/?term=RB11976 RB11977 RB11977 RB11977 6455958 6456548 + ATP-binding protein gene gene6671 http://www.ncbi.nlm.nih.gov/gene/?term=RB11977 RB11978 RB11978 RB11978 6456627 6459272 - hydrolase PMID: 10984043 best DB hits: BLAST: pir:B83340%3B hypothetical protein PA2451 [imported] - Pseudomonas%3B E%3D3e-11 swissprot:Q01578%3B GNL_ZYMMO GLUCONOLACTONASE PRECURSOR%3B E%3D2e-07 swissprot:P10478%3B XYNZ_CLOTM ENDO-1%2C4-BETA-XYLANASE Z PRECURSOR%3B E%3D4e-06 COG: PA2451%3B COG2382 Enterochelin esterase and related enzymes%3B E%3D3e-12 BS_ybbA%3B COG2819 Predicted hydrolase of the alpha/beta superfamily%3B E%3D0.001 fes%3B COG2382 Enterochelin esterase and related enzymes%3B E%3D0.002 gene gene6672 http://www.ncbi.nlm.nih.gov/gene/?term=RB11978 RB1198 RB1198 RB1198 610941 611396 + signal peptide gene gene633 http://www.ncbi.nlm.nih.gov/gene/?term=RB1198 RB11981 RB11981 RB11981 6459460 6460413 + ABC transporter substrate-binding protein PMID: 11058132 best DB hits: BLAST: pir:F75516%3B hypothetical protein - Deinococcus radiodurans (strain%3B E%3D8e-44 ddbj:BAB07122.1%3B (AP001518) ABC transporter (substrate-binding%3B E%3D1e-15 gb:AAG18895.1%3B (AE004992) Vng0316c [Halobacterium sp. NRC-1]%3B E%3D1e-15 COG: DR0462%3B COG0614 ABC-type Fe3+-siderophores transport systems%2C%3B E%3D7e-45 PFAM: PF01497%3B Periplasmic binding protein%3B E%3D0.18 gene gene6673 http://www.ncbi.nlm.nih.gov/gene/?term=RB11981 RB11982 RB11982 RB11982 6460440 6460583 + hypothetical protein gene gene6674 http://www.ncbi.nlm.nih.gov/gene/?term=RB11982 RB11983 RB11983 hisI hisI 6460591 6460971 - phosphoribosyl-AMP cyclohydrolase PMID: 8201624 best DB hits: BLAST: swissprot:Q43925%3B HIS3_AZOCH PHOSPHORIBOSYL-AMP CYCLOHYDROLASE%3B E%3D3e-28 pir:E83011%3B phosphoribosyl-AMP cyclohydrolase PA5066 [imported] -%3B E%3D5e-28 swissprot:O26347%3B HIS3_METTH PHOSPHORIBOSYL-AMP CYCLOHYDROLASE%3B E%3D7e-25 COG: PA5066%3B COG0139 Phosphoribosyl-AMP cyclohydrolase%3B E%3D5e-29 PFAM: PF01502%3B Phosphoribosyl-AMP cyclohydrolase%3B E%3D2.5e-43 gene gene6675 http://www.ncbi.nlm.nih.gov/gene/?term=RB11983 RB11985 RB11985 RB11985 6460980 6461987 - quinone oxidoreductase PMID: 11058132 PMID: 7602590 PMID: 1420281 best DB hits: BLAST: ddbj:BAB04654.1%3B (AP001510) quinone oxidoreductase [Bacillus%3B E%3D2e-43 embl:CAB65629.1%3B (AL136149) oxidoreductase.%3B E%3D1e-31 swissprot:P11415%3B QOR_CAVPO QUINONE OXIDOREDUCTASE (NADPH:QUINONE%3B E%3D3e-31 COG: BH0935%3B COG0604 NADPH:quinone reductase and related Zn-dependent%3B E%3D2e-44 PA5427%3B COG1064 Zn-dependent alcohol dehydrogenases%3B E%3D6e-15 BH0738%3B COG0604 NADPH:quinone reductase and related Zn-dependent%3B E%3D5e-14 PFAM: PF00106%3B short chain dehydrogenase%3B E%3D0.46 PF00107%3B Zinc-binding dehydrogenases%3B E%3D1.6e-79 gene gene6676 http://www.ncbi.nlm.nih.gov/gene/?term=RB11985 RB11986 RB11986 RB11986 6462064 6465612 - histidine protein kinase homolog GacS PMID: 10762268 best DB hits: BLAST: gb:AAF04854.1%3B AF197912_1 (AF197912) histidine protein kinase%3B E%3D3e-57 pir:E83212%3B probable sensorresponse regulator hybrid PA3462%3B E%3D4e-56 pir:H83132%3B probable sensorresponse regulator hybrid PA4112%3B E%3D8e-51 COG: PA3462%3B COG0642 Sensory transduction histidine kinases%3B E%3D3e-57 PFAM: PF00989%3B PAS domain%3B E%3D3.5e-07 PF00512%3B His Kinase A (phosphoacceptor%3B E%3D2.5e-21 PF02518%3B Histidine kinase-%2C DNA gyrase%3B E%3D6.8e-39 gene gene6677 http://www.ncbi.nlm.nih.gov/gene/?term=RB11986 RB11988 RB11988 RB11988 6465521 6468163 - serine/threonine-protein kinase pknB PMID: 11410353 PMID: 11856348 PMID: 8969512 PMID: 11234002 best DB hits: BLAST: swissprot:P54744%3B PKNB_MYCLE SERINETHREONINE-PROTEIN%3B E%3D2e-33 swissprot:P71584%3B PKNB_MYCTU SERINETHREONINE-PROTEIN%3B E%3D3e-33 swissprot:Q11053%3B PKNH_MYCTU PROBABLE SERINETHREONINE-PROTEIN%3B E%3D7e-29 COG: Rv0014c_1%3B COG0515 Serine/threonine protein kinases%3B E%3D3e-34 PFAM: PF00069%3B Protein kinase domain%3B E%3D6.5e-41 gene gene6678 http://www.ncbi.nlm.nih.gov/gene/?term=RB11988 RB1199 RB1199 RB1199 611479 612024 + type IV pilin-like protein PMID: 10567266 best DB hits: BLAST: pir:C75507%3B hypothetical protein - Deinococcus radiodurans (strain%3B E%3D0.44 gene gene634 http://www.ncbi.nlm.nih.gov/gene/?term=RB1199 RB11990 RB11990 RB11990 6468160 6468810 - sigma factor best DB hits: PFAM: PF00140%3B Sigma-70 factor%3B E%3D0.0091 PF00196%3B Bacterial regulatory proteins%2C l%3B E%3D0.0013 gene gene6679 http://www.ncbi.nlm.nih.gov/gene/?term=RB11990 RB11991 RB11991 RB11991 6468817 6469734 - histone deacetylase PMID: 10567266 PMID: 7678591 PMID: 7934817 best DB hits: BLAST: swissprot:P28606%3B YGLA_SYNP2 HYPOTHETICAL 34.1 KD PROTEIN IN GLNA%3B E%3D5e-60 embl:CAA78368.1%3B (Z13965) Portion of hypothetical protein%3B E%3D5e-60 embl:CAA78369.1%3B (Z13965) Portion of hypothetical protein%3B E%3D2e-54 COG: DR0833%3B COG0123 Deacetylases%2C including yeast histone deacetylase%3B E%3D3e-51 PFAM: PF00850%3B Histone deacetylase%3B E%3D1.2e-50 gene gene6680 http://www.ncbi.nlm.nih.gov/gene/?term=RB11991 RB11992 RB11992 RB11992 6469784 6470401 + hypothetical protein gene gene6681 http://www.ncbi.nlm.nih.gov/gene/?term=RB11992 RB11993 RB11993 RB11993 6469886 6470458 - hypothetical protein gene gene6682 http://www.ncbi.nlm.nih.gov/gene/?term=RB11993 RB11994 RB11994 RB11994 6470459 6472660 + hypothetical protein PMID: 9384377 best DB hits: BLAST: pir:B69988%3B hypothetical protein ytaP - Bacillus subtilis -----%3B E%3D0.20 gene gene6683 http://www.ncbi.nlm.nih.gov/gene/?term=RB11994 RB11998 RB11998 RB11998 6472803 6474041 - transcriptional regulator best DB hits: BLAST: pir:E82768%3B conserved hypothetical protein XF0752 [imported] -%3B E%3D3e-13 pir:A82381%3B conserved hypothetical protein VCA1077 [imported] -%3B E%3D1e-10 pir:E83347%3B hypothetical protein PA2395 [imported] - Pseudomonas%3B E%3D4e-10 COG: XF0752_2%3B COG1262 Uncharacterized BCR%3B E%3D1e-13 gene gene6684 http://www.ncbi.nlm.nih.gov/gene/?term=RB11998 RB120 RB120 RB120 52007 52390 - hypothetical protein gene gene66 http://www.ncbi.nlm.nih.gov/gene/?term=RB120 RB1200 RB1200 RB1200 612144 612635 + signal peptide gene gene635 http://www.ncbi.nlm.nih.gov/gene/?term=RB1200 RB12002 RB12002 RB12002 6474153 6474959 - hypothetical protein PMID: 8905231 best DB hits: BLAST: pir:F72334%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D2e-16 pir:H75400%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D6e-12 pir:S75046%3B hypothetical protein slr1718 - Synechocystis sp. (strain%3B E%3D3e-11 COG: TM0797%3B COG2045 Uncharacterized ACR%3B E%3D2e-17 gene gene6685 http://www.ncbi.nlm.nih.gov/gene/?term=RB12002 RB12005 RB12005 RB12005 6475013 6475396 - hypothetical protein gene gene6686 http://www.ncbi.nlm.nih.gov/gene/?term=RB12005 RB12006 RB12006 RB12006 6475429 6476454 + G protein-coupled receptor LGR4 PMID: 9849958 best DB hits: BLAST: gb:AAG59625.1%3B (AF301417) GU1 [Trypanosoma brucei]%3B E%3D2e-08 gb:AAF82144.1%3B AC034256_8 (AC034256) Contains similarity to F-box%3B E%3D1e-06 gb:AAC77910.1%3B (AF061443) G protein-coupled receptor LGR4 [Rattus%3B E%3D6e-05 gene gene6687 http://www.ncbi.nlm.nih.gov/gene/?term=RB12006 RB12007 RB12007 phr phr 6476467 6478047 - DNA photolyase PMID: 8905231 PMID: 86083177 PMID: 90243674 best DB hits: BLAST: pir:S74805%3B DNA photolyase - Synechocystis sp. (strain PCC 6803)%3B E%3D1e-121 pir:B82155%3B deoxyribodipyrimidine photolyase VC1814 [imported] -%3B E%3D5e-66 pir:E83062%3B deoxyribodipyrimidine photolyase PA4660 [imported] -%3B E%3D4e-49 COG: sll1629%3B COG0415 Deoxyribodipyrimidine photolyase%3B E%3D1e-123 PFAM: PF00875%3B DNA photolyase%3B E%3D4.8e-86 gene gene6688 http://www.ncbi.nlm.nih.gov/gene/?term=RB12007 RB12009 RB12009 RB12009 6477951 6479495 - hypothetical protein gene gene6689 http://www.ncbi.nlm.nih.gov/gene/?term=RB12009 RB1201 RB1201 RB1201 612629 612754 - hypothetical protein gene gene636 http://www.ncbi.nlm.nih.gov/gene/?term=RB1201 RB12012 RB12012 xylB xylB 6479639 6481168 + xylulose kinase PMID: 9495747 best DB hits: BLAST: gb:AAC46146.1%3B (AF001974) xylulose kinase%3B XylB%3B E%3D1e-108 swissprot:P39211%3B XYLB_BACSU XYLULOSE KINASE (XYLULOKINASE)%3B E%3D4e-79 ddbj:BAB06475.1%3B (AP001516) xylose kinase [Bacillus halodurans]%3B E%3D5e-76 COG: BS_xylB%3B COG1070 Sugar (pentulose and hexulose) kinases%3B E%3D4e-80 PAB2406%3B COG0554 Glycerol kinase%3B E%3D2e-31 APE0017%3B COG1070 Sugar (pentulose and hexulose) kinases%3B E%3D1e-27 PFAM: PF00370%3B FGGY family of carbohydrate kinas%3B E%3D6e-96 PF02782%3B FGGY family of carbohydrate kinas%3B E%3D7.6e-63 gene gene6690 http://www.ncbi.nlm.nih.gov/gene/?term=RB12012 RB12013 RB12013 proB proB 6481165 6482334 + gamma-glutamyl kinase catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis gene gene6691 http://www.ncbi.nlm.nih.gov/gene/?term=RB12013 RB12015 RB12015 RB12015 6482423 6483388 - hypothetical protein gene gene6692 http://www.ncbi.nlm.nih.gov/gene/?term=RB12015 RB12019 RB12019 RB12019 6483600 6484598 + oxidoreductase PMID: 10984043 PMID: 9560382 best DB hits: BLAST: pir:T35322%3B hypothetical protein SC5H1.06c - Streptomyces coelicolor%3B E%3D1e-20 swissprot:P46336%3B IOLS_BACSU IOLS PROTEIN (VEGETATIVE PROTEIN 147)%3B E%3D5e-18 pir:C83506%3B probable oxidoreductase PA1127 [imported] - Pseudomonas%3B E%3D9e-18 COG: BS_iolS%3B COG0667 Predicted oxidoreductases (related to aryl-alcohol%3B E%3D5e-19 Ta0027%3B COG0656 Aldo/keto reductases%2C related to diketogulonate%3B E%3D5e-07 PFAM: PF00248%3B Aldo/keto reductase%3B E%3D9e-24 gene gene6693 http://www.ncbi.nlm.nih.gov/gene/?term=RB12019 RB1202 RB1202 RB1202 612786 613154 + transposase PMID: 10496929 best DB hits: BLAST: gb:AAG56925.1%3B AE005414_2 (AE005414) IS30 transposase encoded%3B E%3D1e-10 ddbj:BAA84890.1%3B (AB024946) Transposase [Escherichia coli]%3B E%3D2e-10 pir:S28740%3B probable transposase (insertion sequence IS30) -%3B E%3D2e-10 COG: tra8_g1%3B COG2826 Transposase%2C IS30 family%3B E%3D2e-11 PFAM: PF01325%3B Iron dependent repressor%2C N-t%3B E%3D0.17 PF01381%3B Helix-turn-helix%3B E%3D0.086 PF01047%3B MarR family%3B E%3D0.42 gene gene637 http://www.ncbi.nlm.nih.gov/gene/?term=RB1202 RB12020 RB12020 RB12020 6484562 6484672 - hypothetical protein gene gene6694 http://www.ncbi.nlm.nih.gov/gene/?term=RB12020 RB12021 RB12021 RB12021 6484770 6485018 - hypothetical protein gene gene6695 http://www.ncbi.nlm.nih.gov/gene/?term=RB12021 RB12022 RB12022 RB12022 6485015 6486337 - hypothetical protein gene gene6696 http://www.ncbi.nlm.nih.gov/gene/?term=RB12022 RB12024 RB12024 RB12024 6486334 6489477 - signal peptide best DB hits: PFAM: PF00034%3B Cytochrome c%3B E%3D0.15 gene gene6697 http://www.ncbi.nlm.nih.gov/gene/?term=RB12024 RB1203 RB1203 RB1203 613202 613408 - hypothetical protein gene gene638 http://www.ncbi.nlm.nih.gov/gene/?term=RB1203 RB12030 RB12030 RB12030 6489580 6490374 + hypothetical protein gene gene6698 http://www.ncbi.nlm.nih.gov/gene/?term=RB12030 RB12031 RB12031 RB12031 6490359 6490799 - hypothetical protein gene gene6699 http://www.ncbi.nlm.nih.gov/gene/?term=RB12031 RB12035 RB12035 RB12035 6490966 6492021 + hypothetical protein gene gene6700 http://www.ncbi.nlm.nih.gov/gene/?term=RB12035 RB12038 RB12038 RB12038 6492138 6493271 + hypothetical protein best DB hits: BLAST: ddbj:BAB04429.1%3B (AP001509) BH0710~~unknown conserved protein%3B E%3D8e-91 pir:T34927%3B probable oxidoreductase - Streptomyces coelicolor%3B E%3D5e-84 embl:CAB88965.1%3B (AL353864) oxidoreductase.%3B E%3D3e-46 COG: BH0710%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D7e-92 PFAM: PF01408%3B Oxidoreductase%2C NAD-bin%3B E%3D7e-36 PF02894%3B Oxidoreductase%2C C-termi%3B E%3D6.8e-06 gene gene6701 http://www.ncbi.nlm.nih.gov/gene/?term=RB12038 RB12039 RB12039 glcD glcD 6493268 6494713 + glycolate oxidase subunit GlcD PMID: 8606183 PMID: 11283302 best DB hits: BLAST: pir:E82977%3B glycolate oxidase subunit GlcD PA5355 [imported] -%3B E%3D1e-102 pir:S74338%3B glycolate oxidase chain glcD - Synechocystis sp. (strain%3B E%3D1e-101 swissprot:P52075%3B GLCD_ECOLI GLYCOLATE OXIDASE SUBUNIT GLCD%3B E%3D1e-99 COG: PA5355%3B COG0277 FAD/FMN-containing dehydrogenases%3B E%3D1e-103 PFAM: PF01565%3B FAD binding domain%3B E%3D2.7e-55 PF02913%3B FAD linked oxidases%2C C-terminal%3B E%3D7.9e-53 gene gene6702 http://www.ncbi.nlm.nih.gov/gene/?term=RB12039 RB1204 RB1204 RB1204 613431 613703 - hypothetical protein gene gene639 http://www.ncbi.nlm.nih.gov/gene/?term=RB1204 RB12040 RB12040 glcE glcE 6494706 6495938 + glycolate oxidase subunits GlcE and GlcF PMID: 8606183 best DB hits: BLAST: pir:H65083%3B glycolate oxidase subunits GlcE and GlcF - Escherichia%3B E%3D6e-23 swissprot:P52073%3B GLCE_ECOLI GLYCOLATE OXIDASE SUBUNIT GLCE%3B E%3D6e-23 pir:D82977%3B glycolate oxidase subunit GlcE PA5354 [imported] -%3B E%3D1e-22 COG: glcF_1%3B COG0277 FAD/FMN-containing dehydrogenases%3B E%3D6e-24 PFAM: PF01565%3B FAD binding domain%3B E%3D6.6e-19 gene gene6703 http://www.ncbi.nlm.nih.gov/gene/?term=RB12040 RB12042 RB12042 glcF glcF 6495935 6497269 + glycolate oxidase%2C iron-sulfur subunit PMID: 8606183 best DB hits: BLAST: pir:G75361%3B glycolate oxidase%2C iron-sulfur subunit - Deinococcus%3B E%3D1e-101 pir:S75231%3B (S)-2-hydroxy-acid oxidase (EC 1.1.3.15) - Synechocystis%3B E%3D3e-62 ddbj:BAB05854.1%3B (AP001514) glycolate oxidase iron-sulfur subunit%3B E%3D2e-58 COG: DR1730%3B COG0247 Fe-S oxidoreductases%3B E%3D1e-102 PFAM: PF00037%3B 4Fe-4S binding domain%3B E%3D0.21 PF02754%3B Domain of unknown function (DUF2%3B E%3D4.9e-07 gene gene6704 http://www.ncbi.nlm.nih.gov/gene/?term=RB12042 RB12043 RB12043 RB12043 6497277 6497681 + hypothetical protein gene gene6705 http://www.ncbi.nlm.nih.gov/gene/?term=RB12043 RB12046 RB12046 RB12046 6497841 6497996 + hypothetical protein gene gene6706 http://www.ncbi.nlm.nih.gov/gene/?term=RB12046 RB12047 RB12047 RB12047 6497993 6499450 + ATP-dependent RNA helicase rhlE PMID: 8037924 PMID: 9278503 PMID: 8905232 PMID: 1931833 best DB hits: BLAST: swissprot:P25888%3B RHLE_ECOLI ATP-DEPENDENT RNA HELICASE%3B E%3D5e-78 gb:AAG55168.1%3B AE005260_7 (AE005260) ATP-dependent RNA%3B E%3D5e-78 pir:D83591%3B probable ATP-dependent RNA helicase PA0428 [imported] -%3B E%3D8e-77 COG: rhlE%3B COG0513 Superfamily II DNA and RNA helicases%3B E%3D4e-79 PFAM: PF00270%3B DEAD/DEAH box helicase%3B E%3D5.5e-70 PF02776%3B Thiamine pyrophosphate enzyme%2C%3B E%3D0.21 PF00271%3B Helicase conserved C-terminal d%3B E%3D3.5e-36 gene gene6707 http://www.ncbi.nlm.nih.gov/gene/?term=RB12047 RB12048 RB12048 RB12048 6499453 6502215 - hypothetical protein best DB hits: BLAST: pir:T49412%3B hypothetical protein B1D4.270 [imported] - Neurospora%3B E%3D0.89 PFAM: PF00432%3B Prenyltransferase and squalene ox%3B E%3D0.026 gene gene6708 http://www.ncbi.nlm.nih.gov/gene/?term=RB12048 RB1205 RB1205 RB1205 613667 615037 - iduronate sulfatase PMID: 93315172 best DB hits: BLAST: gb:AAA37880.1%3B (L07921) iduronate sulfatase [Mus musculus]%3B E%3D1e-36 gb:AAA16877.1%3B (L13329) iduronate-2-sulfatase [Homo sapiens]%3B E%3D2e-35 gb:AAB33747.1%3B iduronate-2-sulfatase%2C IDS {EC 3.1.6.13} [human%2C%3B E%3D1e-34 COG: PA0031%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D5e-29 PA1689%3B COG1368 Phosphoglycerol transferase and related proteins%2C%3B E%3D2e-04 PFAM: PF00884%3B Sulfatase%3B E%3D1.4e-18 gene gene640 http://www.ncbi.nlm.nih.gov/gene/?term=RB1205 RB12053 RB12053 RB12053 6502199 6502558 - export protein ExbD PMID: 10984043 PMID: 1644779 PMID: 2670903 best DB hits: BLAST: pir:F83274%3B conserved hypothetical protein PA2982 [imported] -%3B E%3D3e-04 embl:CAB50919.1%3B (AJ243354) hypothetical protein [Pseudomonas%3B E%3D7e-04 pir:S74451%3B hypothetical protein sll1405 - Synechocystis sp. (strain%3B E%3D0.001 COG: PA2982%3B COG0848 Biopolymer transport protein%3B E%3D3e-05 PFAM: PF02472%3B Biopolymer transport protein ExbD/To%3B E%3D1.6e-12 gene gene6709 http://www.ncbi.nlm.nih.gov/gene/?term=RB12053 RB12055 RB12055 RB12055 6502628 6503587 - tolQ-type transport protein PMID: 10984043 best DB hits: BLAST: pir:G83274%3B probable tolQ-type transport protein PA2983 [imported] -%3B E%3D6e-07 pir:G70470%3B TolQ homolog - Aquifex aeolicus ----- gb:%3B E%3D3e-05 pir:D82726%3B conserved hypothetical protein XF1079 [imported] -%3B E%3D7e-04 COG: PA2983%3B COG0811 Biopolymer transport proteins%3B E%3D6e-08 PFAM: PF01618%3B MotA/TolQ/ExbB proton channel famil%3B E%3D6.7e-17 gene gene6710 http://www.ncbi.nlm.nih.gov/gene/?term=RB12055 RB12056 RB12056 RB12056 6503584 6506925 - hypothetical protein PMID: 10192388 best DB hits: BLAST: pir:T39943%3B hypothetical protein SPBC23E6.09 - fission yeast%3B E%3D2e-04 pir:C72048%3B tpr repeats-ct683 hypothetical protein - Chlamydophila%3B E%3D0.006 swissprot:P42810%3B YAG7_PSEAE HYPOTHETICAL PROTEIN PA4667 -----%3B E%3D0.24 COG: CPn0693%3B COG0457 TPR-repeat-containing proteins%3B E%3D6e-04 PFAM: PF00515%3B TPR Domain%3B E%3D0.0018 PF00903%3B Glyoxalase/Bleomycin resistance%3B E%3D0.85 PF00515%3B TPR Domain%3B E%3D0.52 gene gene6711 http://www.ncbi.nlm.nih.gov/gene/?term=RB12056 RB12060 RB12060 RB12060 6506977 6507405 - hypothetical protein gene gene6712 http://www.ncbi.nlm.nih.gov/gene/?term=RB12060 RB12061 RB12061 pyrG pyrG 6507444 6509099 - CTP synthetase CTP synthase%3B cytidine triphosphate synthetase%3B catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen%3B in Escherichia coli this enzyme forms a homotetramer gene gene6713 http://www.ncbi.nlm.nih.gov/gene/?term=RB12061 RB12064 RB12064 RB12064 6509306 6509911 - hypothetical protein best DB hits: BLAST: pir:T07014%3B phosphoglycerate kinase (EC 2.7.2.3) precursor%2C%3B E%3D0.68 gene gene6714 http://www.ncbi.nlm.nih.gov/gene/?term=RB12064 RB12065 RB12065 RB12065 6509803 6510318 - hypothetical protein gene gene6715 http://www.ncbi.nlm.nih.gov/gene/?term=RB12065 RB12066 RB12066 RB12066 6510147 6510554 + hypothetical protein gene gene6716 http://www.ncbi.nlm.nih.gov/gene/?term=RB12066 RB12067 RB12067 RB12067 6510236 6510559 + hypothetical protein gene gene6717 http://www.ncbi.nlm.nih.gov/gene/?term=RB12067 RB12068 RB12068 RB12068 6510594 6512255 - serine/threonine protein kinase afsK PMID: 8063104 PMID: 8635757 PMID: 12000953 best DB hits: BLAST: gb:AAB89850.1%3B (AE001008) conserved hypothetical protein%3B E%3D2e-06 swissprot:P54741%3B AFSK_STRCO SERINETHREONINE PROTEIN KINASE AFSK%3B E%3D1e-05 embl:CAB88430.1%3B (AL353815) serinethreonine protein kinase%3B E%3D1e-05 COG: AF1399%3B COG1520 Uncharacterized proteins of WD40-like repeat family%3B E%3D1e-07 PFAM: PF01011%3B PQQ enzyme repeat%3B E%3D0.00048 gene gene6718 http://www.ncbi.nlm.nih.gov/gene/?term=RB12068 RB12071 RB12071 RB12071 6512255 6512866 + hypothetical protein gene gene6719 http://www.ncbi.nlm.nih.gov/gene/?term=RB12071 RB12072 RB12072 RB12072 6512863 6512973 + hypothetical protein gene gene6720 http://www.ncbi.nlm.nih.gov/gene/?term=RB12072 RB12073 RB12073 RB12073 6513066 6513974 - hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:A83457%3B conserved hypothetical protein PA1501 [imported] -%3B E%3D1e-17 pir:D83577%3B conserved hypothetical protein PA0550 [imported] -%3B E%3D8e-13 gb:AAG54864.1%3B AE005231_11 (AE005231) glyoxylate-induced protein%3B E%3D5e-12 COG: PA1501%3B COG1082 Predicted endonucleases%3B E%3D1e-18 gene gene6721 http://www.ncbi.nlm.nih.gov/gene/?term=RB12073 RB12075 RB12075 RB12075 6513960 6514211 + hypothetical protein gene gene6722 http://www.ncbi.nlm.nih.gov/gene/?term=RB12075 RB12076 RB12076 RB12076 6514171 6515541 - keratin gene gene6723 http://www.ncbi.nlm.nih.gov/gene/?term=RB12076 RB12079 RB12079 RB12079 6515568 6515732 + hypothetical protein gene gene6724 http://www.ncbi.nlm.nih.gov/gene/?term=RB12079 RB1208 RB1208 RB1208 615506 616456 + signal peptide gene gene641 http://www.ncbi.nlm.nih.gov/gene/?term=RB1208 RB12080 RB12080 RB12080 6515753 6517231 - protein-L-isoaspartate O-methyltransferase PMID: 1860862 PMID: 9278503 PMID: 11206551 PMID: 11258796 PMID: 7928962 PMID: 8208244 PMID: 8132457 best DB hits: BLAST: swissprot:P24206%3B PIMT_ECOLI PROTEIN-L-ISOASPARTATE%3B E%3D7e-39 pir:G82311%3B protein-L-isoaspartate O-methyltransferase VC0532%3B E%3D3e-38 swissprot:P45683%3B PIMT_PSEAE PROTEIN-L-ISOASPARTATE%3B E%3D9e-36 COG: pcm%3B COG2518 Protein-L-isoaspartate carboxylmethyltransferase%3B E%3D7e-40 PFAM: PF00398%3B Ribosomal RNA adenine dimethyl%3B E%3D0.12 PF01135%3B Protein-L-isoaspartate(D-aspar%3B E%3D6.1e-63 gene gene6725 http://www.ncbi.nlm.nih.gov/gene/?term=RB12080 RB12081 RB12081 RB12081 6517228 6518865 - exopolyphosphatase PMID: 8380170 PMID: 9278503 PMID: 9205837 PMID: 11206551 PMID: 11258796 PMID: 8212131 best DB hits: BLAST: pir:S76869%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D2e-32 pir:C75615%3B exopolyphosphatase - Deinococcus radiodurans (strain R1)%3B E%3D2e-27 swissprot:P29014%3B PPX_ECOLI EXOPOLYPHOSPHATASE (METAPHOSPHATASE)%3B E%3D4e-27 COG: sll1546%3B COG0248 Exopolyphosphatase%3B E%3D2e-33 PFAM: PF02541%3B Ppx/GppA phosphatase%3B E%3D6e-15 PF01966%3B HD domain%3B E%3D0.084 gene gene6726 http://www.ncbi.nlm.nih.gov/gene/?term=RB12081 RB12082 RB12082 RB12082 6518874 6519608 - hydrolase- phosphatase or haloacid dehydrogenase PMID: 11466286 best DB hits: BLAST: pir:A75406%3B hydrolase - Deinococcus radiodurans (strain R1) -----%3B E%3D0.048 gb:AAG59075.1%3B AE005619_8 (AE005619) phosphatase%3B E%3D0.11 pir:S40829%3B hypothetical 23.5K protein (glnA-fdhE intergenic region)%3B E%3D0.12 COG: DR1344%3B COG1011 Predicted hydrolases of the HAD superfamily%3B E%3D0.005 PFAM: PF00702%3B haloacid dehalogenase-like hydrolas%3B E%3D0.72 gene gene6727 http://www.ncbi.nlm.nih.gov/gene/?term=RB12082 RB12084 RB12084 RB12084 6519572 6520429 - hypothetical protein gene gene6728 http://www.ncbi.nlm.nih.gov/gene/?term=RB12084 RB12086 RB12086 RB12086 6520422 6520637 + hypothetical protein gene gene6729 http://www.ncbi.nlm.nih.gov/gene/?term=RB12086 RB12087 RB12087 ilvD ilvD 6520558 6522321 + dihydroxy-acid dehydratase catalyzes the dehydration of 2%2C3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis gene gene6730 http://www.ncbi.nlm.nih.gov/gene/?term=RB12087 RB12088 RB12088 RB12088 6522441 6522755 - hypothetical protein gene gene6731 http://www.ncbi.nlm.nih.gov/gene/?term=RB12088 RB12089 RB12089 RB12089 6522897 6524414 - iduronate-2-sulfatase PMID: 8244397 PMID: 8325651 best DB hits: BLAST: gb:AAA16877.1%3B (L13329) iduronate-2-sulfatase [Homo sapiens]%3B E%3D7e-51 gb:AAB33747.1%3B iduronate-2-sulfatase%2C IDS {EC 3.1.6.13} [human%2C%3B E%3D3e-50 gb:AAA37880.1%3B (L07921) iduronate sulfatase [Mus musculus]%3B E%3D1e-47 COG: PA0031%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D3e-35 BS_yfnI%3B COG1368 Phosphoglycerol transferase and related proteins%2C%3B E%3D9e-04 PA0924%3B COG3083 Predicted hydrolase of alkaline phosphatase%3B E%3D0.004 PFAM: PF00884%3B Sulfatase%3B E%3D2e-22 gene gene6732 http://www.ncbi.nlm.nih.gov/gene/?term=RB12089 RB12092 RB12092 RB12092 6524631 6526481 - N-acetylgalactosamine 6-sulfate sulfatase (GALNS) PMID: 94292193 best DB hits: BLAST: gb:AAF30402.1%3B AF109924_1 (AF109924) sulfatase 1 precursor [Helix%3B E%3D1e-36 ddbj:BAA04535.1%3B (D17629) N-acetylgalactosamine 6-sulfate%3B E%3D6e-36 embl:CAA34667.1%3B (X16679) arylsulfatase [Hemicentrotus%3B E%3D4e-32 COG: ydeN%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D2e-28 PFAM: PF00884%3B Sulfatase%3B E%3D8.4e-49 gene gene6733 http://www.ncbi.nlm.nih.gov/gene/?term=RB12092 RB12097 RB12097 RB12097 6526718 6529564 + signal peptide gene gene6734 http://www.ncbi.nlm.nih.gov/gene/?term=RB12097 RB1210 RB1210 sgaU sgaU 616571 617416 - hexulose-6-phosphate isomerase PMID: 7610040 best DB hits: BLAST: swissprot:Q58707%3B YD11_METJA HYPOTHETICAL PROTEIN MJ1311 -----%3B E%3D0.004 swissprot:P39305%3B SGAU_ECOLI HEXULOSE-6-PHOSPHATE%3B E%3D0.004 gb:AAG59393.1%3B AE005652_10 (AE005652)%3B E%3D0.004 COG: MJ1311%3B COG1082 Predicted endonucleases%3B E%3D4e-04 PFAM: PF02199%3B Saposin A-type domain%3B E%3D0.63 gene gene642 http://www.ncbi.nlm.nih.gov/gene/?term=RB1210 RB12102 RB12102 RB12102 6529595 6531028 + hypothetical protein gene gene6735 http://www.ncbi.nlm.nih.gov/gene/?term=RB12102 RB12104 RB12104 RB12104 6531127 6531540 + hypothetical protein best DB hits: BLAST: pir:T05663%3B hypothetical protein F22I13.120 - Arabidopsis thaliana%3B E%3D0.65 gene gene6736 http://www.ncbi.nlm.nih.gov/gene/?term=RB12104 RB12107 RB12107 pepA pepA 6531471 6532994 - cytosol aminopeptidase PMID: 9864319 PMID: 10984043 best DB hits: BLAST: swissprot:O67868%3B AMPA_AQUAE PROBABLE CYTOSOL AMINOPEPTIDASE%3B E%3D6e-73 pir:F82843%3B aminopeptidase AI XF0138 [imported] - Xylella%3B E%3D3e-70 swissprot:O68822%3B AMPA_PSEAE CYTOSOL AMINOPEPTIDASE (LEUCINE%3B E%3D1e-67 COG: aq_2099%3B COG0260 Leucyl aminopeptidase%3B E%3D5e-74 PFAM: PF00883%3B Cytosol aminopeptidase%3B E%3D1.7e-148 gene gene6737 http://www.ncbi.nlm.nih.gov/gene/?term=RB12107 RB12108 RB12108 RB12108 6533049 6534506 - response regulatory protein (atoC) PMID: 9665876 PMID: 8346225 best DB hits: BLAST: ddbj:BAB06667.1%3B (AP001517) two-component response regulator in%3B E%3D2e-87 pir:F71315%3B probable response regulatory protein (atoC) - syphilis%3B E%3D1e-85 gb:AAF33506.1%3B (AF170176) Salmonella typhimurium transcriptional%3B E%3D5e-83 COG: BH2948%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D2e-88 aq_218_2%3B COG1221 NtrC family transcriptional regulators%2C ATPase%3B E%3D1e-66 CT468%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D5e-66 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D1.2e-32 PF00158%3B Sigma-54 interaction domain%3B E%3D1.7e-122 gene gene6738 http://www.ncbi.nlm.nih.gov/gene/?term=RB12108 RB1211 RB1211 RB1211 617437 617550 + hypothetical protein gene gene643 http://www.ncbi.nlm.nih.gov/gene/?term=RB1211 RB12110 RB12110 RB12110 6534622 6534792 - hypothetical protein gene gene6739 http://www.ncbi.nlm.nih.gov/gene/?term=RB12110 RB12112 RB12112 RB12112 6534940 6536790 - cytoskeleton assembly control protein SLA1 best DB hits: BLAST: pir:T50995%3B related to cytoskeleton assembly control protein SLA1%3B E%3D6e-07 pir:T37781%3B probable cytoskeleton assembly control protein - fission%3B E%3D5e-05 embl:CAA84826.1%3B (Z35768) ORF YBL007c [Saccharomyces cerevisiae]%3B E%3D0.18 gene gene6740 http://www.ncbi.nlm.nih.gov/gene/?term=RB12112 RB12113 RB12113 carB carB 6536791 6540042 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) large chain PMID: 8905231 PMID: 6308632 best DB hits: BLAST: swissprot:P00968%3B CARB_ECOLI CARBAMOYL-PHOSPHATE SYNTHASE LARGE%3B E%3D0.0 pir:S76557%3B carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC%3B E%3D0.0 gb:AAG10606.1%3B AC008030_6 (AC008030) carbamoyl phosphate synthetase%3B E%3D0.0 COG: AF1274%3B COG0458 Carbamoylphosphate synthase large subunit (split gene%3B E%3D0.0 carB%3B COG0458 Carbamoylphosphate synthase large subunit (split gene in%3B E%3D0.0 BU144%3B COG0458 Carbamoylphosphate synthase large subunit (split gene%3B E%3D0.0 PFAM: PF00289%3B Carbamoyl-phosphate synthase L%3B E%3D2.9e-53 PF02222%3B ATP-grasp domain%3B E%3D0.38 PF02786%3B Carbamoyl-phosphate synthase L%3B E%3D3.6e-108 gene gene6741 http://www.ncbi.nlm.nih.gov/gene/?term=RB12113 RB12114 RB12114 RB12114 6539927 6540259 - hypothetical protein gene gene6742 http://www.ncbi.nlm.nih.gov/gene/?term=RB12114 RB12116 RB12116 dnaQ dnaQ 6540281 6541348 - DNA polymerase III subunit epsilon 3'-5' exonuclease of DNA polymerase III gene gene6743 http://www.ncbi.nlm.nih.gov/gene/?term=RB12116 RB12117 RB12117 RB12117 6541425 6541811 + hypothetical protein gene gene6744 http://www.ncbi.nlm.nih.gov/gene/?term=RB12117 RB12118 RB12118 RB12118 6541757 6543253 - hypothetical protein best DB hits: PFAM: PF01319%3B Cholesterol oxidase%3B E%3D0.23 gene gene6745 http://www.ncbi.nlm.nih.gov/gene/?term=RB12118 RB1212 RB1212 mgtE mgtE 617517 618866 - Mg2+ transport protein PMID: 8905231 best DB hits: BLAST: pir:S77552%3B Mg2+ transport protein - Synechocystis sp. (strain PCC%3B E%3D8e-53 pir:B71265%3B probable Mg2+ transport protein (mgtE) - syphilis%3B E%3D2e-51 pir:G72287%3B hypothetical protein TM1161 - Thermotoga maritima%3B E%3D4e-49 COG: slr1216%3B COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain)%3B E%3D7e-54 MTH855_2%3B COG0517 CBS domains%3B E%3D7e-09 PFAM: PF00571%3B CBS domain%3B E%3D0.0001 PF01769%3B Divalent cation transporter%3B E%3D6.8e-26 gene gene644 http://www.ncbi.nlm.nih.gov/gene/?term=RB1212 RB12124 RB12124 RB12124 6543314 6545887 - signal peptide best DB hits: BLAST: gb:AAF73802.1%3B AF154033_1 (AF154033) surface protein PspC%3B E%3D0.82 gene gene6746 http://www.ncbi.nlm.nih.gov/gene/?term=RB12124 RB12129 RB12129 RB12129 6545870 6548362 + threonyl-tRNA synthetase PMID: 9634230 PMID: 6353409 best DB hits: BLAST: swissprot:O06200%3B SYT_MYCTU THREONYL-TRNA SYNTHETASE%3B E%3D1e-124 pir:F83303%3B threonyl-tRNA synthetase PA2744 [imported] - Pseudomonas%3B E%3D8e-81 swissprot:O67583%3B SYT_AQUAE THREONYL-TRNA SYNTHETASE%3B E%3D2e-80 COG: Rv2614c%3B COG0441 Threonyl-tRNA synthetase%3B E%3D1e-125 PFAM: PF02824%3B TGS domain%3B E%3D2.6e-07 PF00587%3B tRNA synthetase class II (G%2C H%2C%3B E%3D7.8e-85 gene gene6747 http://www.ncbi.nlm.nih.gov/gene/?term=RB12129 RB1213 RB1213 efp efp 618945 619532 - elongation factor P gene gene645 http://www.ncbi.nlm.nih.gov/gene/?term=RB1213 RB12131 RB12131 RB12131 6548396 6548635 + hypothetical protein gene gene6748 http://www.ncbi.nlm.nih.gov/gene/?term=RB12131 RB12132 RB12132 RB12132 6548550 6548702 - hypothetical protein gene gene6749 http://www.ncbi.nlm.nih.gov/gene/?term=RB12132 RB12133 RB12133 dapE dapE 6548699 6550105 - ArgE/DapE/Acy1 family protein PMID: 1644752 PMID: 1644751 best DB hits: BLAST: pir:E75324%3B ArgEDapE/Acy1 family protein - Deinococcus radiodurans%3B E%3D1e-114 ddbj:BAB07594.1%3B (AP001520) BH3875~~unknown conserved protein in%3B E%3D1e-103 embl:CAC01315.1%3B (AL390968) peptidase [Streptomyces%3B E%3D5e-82 COG: DR2025%3B COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate%3B E%3D1e-115 YFR044c%3B COG0624 Acetylornithine%3B E%3D2e-65 DR2017%3B COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate%3B E%3D7e-46 PFAM: PF01546%3B Peptidase M20/M25/M40%3B E%3D2e-48 gene gene6750 http://www.ncbi.nlm.nih.gov/gene/?term=RB12133 RB12137 RB12137 RB12137 6550288 6550638 + hypothetical protein PMID: 10952301 best DB hits: BLAST: swissprot:Q9KSW3%3B YB43_VIBCH HYPOTHETICAL PROTEIN VC1143 -----%3B E%3D2e-07 swissprot:Q9I0L7%3B YQ21_PSEAE HYPOTHETICAL PROTEIN PA2621%3B E%3D2e-04 swissprot:P75832%3B YLJA_ECOLI PROTEIN YLJA ----- pir: A64827%3B E%3D9e-04 COG: VC1143%3B COG2127 Uncharacterized ACR%3B E%3D2e-08 PFAM: PF02617%3B Uncharacterized ACR%2C COG2127%3B E%3D1.6e-08 gene gene6751 http://www.ncbi.nlm.nih.gov/gene/?term=RB12137 RB12138 RB12138 RB12138 6550672 6551958 + hypothetical protein PMID: 10086841 best DB hits: BLAST: ddbj:BAB05070.1%3B (AP001511) BH1351~~unknown conserved protein%3B E%3D4e-78 swissprot:P54462%3B YQEV_BACSU HYPOTHETICAL 51.7 KD PROTEIN IN%3B E%3D3e-75 pir:G81594%3B conserved hypothetical protein CP0277 [imported] -%3B E%3D3e-67 COG: BH1351%3B COG0621 Fe-S oxidoreductases family 1%3B E%3D3e-79 PFAM: PF00919%3B Uncharacterized protein famil%3B E%3D3.3e-29 PF02143%3B Radical activating enzyme%3B E%3D0.53 gene gene6752 http://www.ncbi.nlm.nih.gov/gene/?term=RB12138 RB12139 RB12139 RB12139 6551955 6552308 + hypothetical protein best DB hits: BLAST: gb:AAG21389.1%3B AF302051_3 (AF302051) unknown [Bacillus%3B E%3D4e-15 ddbj:BAB07716.1%3B (AP001520) BH3997~~unknown conserved protein in%3B E%3D6e-15 pir:C83047%3B conserved hypothetical protein PA4789 [imported] -%3B E%3D1e-12 COG: BH3997%3B COG1694 Predicted pyrophosphatase%3B E%3D6e-16 gene gene6753 http://www.ncbi.nlm.nih.gov/gene/?term=RB12139 RB1214 RB1214 kamA kamA 619560 620705 + L-lysine 2%2C3-aminomutase best DB hits: BLAST: pir:C82554%3B conserved hypothetical protein XF2474 [imported] -%3B E%3D7e-72 gb:AAG59345.1%3B AE005648_7 (AE005648) orf%2C hypothetical protein%3B E%3D4e-70 swissprot:P39280%3B YJEK_ECOLI HYPOTHETICAL 38.7 KD PROTEIN IN%3B E%3D1e-67 COG: XF2474%3B COG1509 Lysine 2%2C3-aminomutase%3B E%3D7e-73 PFAM: PF02587%3B Uncharacterized ACR%2C YjeK family COG%3B E%3D6e-109 gene gene646 http://www.ncbi.nlm.nih.gov/gene/?term=RB1214 RB12142 RB12142 RB12142 6552539 6552850 + hypothetical protein gene gene6754 http://www.ncbi.nlm.nih.gov/gene/?term=RB12142 RB12144 RB12144 RB12144 6552826 6553137 - hypothetical protein gene gene6755 http://www.ncbi.nlm.nih.gov/gene/?term=RB12144 RB12145 RB12145 RB12145 6553176 6554285 - molybdopterin biosynthesis protein MoeB PMID: 11058132 PMID: 3045084 best DB hits: BLAST: ddbj:BAB05138.1%3B (AP001512) molybdopterin biosynthesis [Bacillus%3B E%3D4e-58 pir:E69845%3B thiamin biosynthesis homolog yjbU - Bacillus subtilis%3B E%3D3e-57 pir:F69659%3B molybdopterin biosynthesis protein moeB - Bacillus%3B E%3D1e-50 COG: BH1419%3B COG0476 Dinucleotide-utilizing enzymes involved in%3B E%3D4e-59 PFAM: PF02254%3B KTN NAD-binding domain%3B E%3D0.29 PF00899%3B ThiF family%3B E%3D1e-46 gene gene6756 http://www.ncbi.nlm.nih.gov/gene/?term=RB12145 RB12148 RB12148 prc prc 6554674 6556800 - periplasmic tail-specific proteinase PMID: 10984043 PMID: 1729701 best DB hits: BLAST: pir:C83238%3B periplasmic tail-specific proteinase PA3257 [imported] -%3B E%3D5e-91 pir:F82634%3B tail-specific proteinase XF1823 [imported] - Xylella%3B E%3D5e-87 gb:AAK02353.1%3B (AE006061) Prc [Pasteurella multocida]%3B E%3D3e-75 COG: PA3257%3B COG0793 Periplasmic protease%3B E%3D4e-92 PFAM: PF00595%3B PDZ domain (Also known as DHR or GLG%3B E%3D1.1e-09 PF02692%3B Interphotoreceptor retinoid-binding%3B E%3D0.78 gene gene6758 http://www.ncbi.nlm.nih.gov/gene/?term=RB12148 RB12150 RB12150 RB12150 6556901 6557062 + hypothetical protein gene gene6759 http://www.ncbi.nlm.nih.gov/gene/?term=RB12150 RB12151 RB12151 RB12151 6557051 6557587 - hypothetical protein best DB hits: BLAST: ddbj:BAB18046.1%3B (AB033991) BtrG [Bacillus circulans]%3B E%3D0.10 gene gene6760 http://www.ncbi.nlm.nih.gov/gene/?term=RB12151 RB12152 RB12152 RB12152 6557588 6557737 - hypothetical protein gene gene6761 http://www.ncbi.nlm.nih.gov/gene/?term=RB12152 RB12153 RB12153 RB12153 6557715 6557966 - hypothetical protein gene gene6762 http://www.ncbi.nlm.nih.gov/gene/?term=RB12153 RB12155 RB12155 RB12155 6557988 6561179 + signal peptide gene gene6763 http://www.ncbi.nlm.nih.gov/gene/?term=RB12155 RB12159 RB12159 RB12159 6561122 6562663 + hypothetical protein gene gene6764 http://www.ncbi.nlm.nih.gov/gene/?term=RB12159 RB1216 RB1216 RB1216 620722 622605 + ABC transporter permease PMID: 9403685 best DB hits: BLAST: pir:H70193%3B membrane spanning protein homolog - Lyme disease%3B E%3D6e-04 gb:AAD39630.1%3B AF033858_13 (AF033858) ABC transporter%3B E%3D0.074 pir:D69049%3B conserved hypothetical protein MTH1371 -%3B E%3D0.15 COG: BB0753%3B COG1277 Permease component of an ABC-transporter%3B E%3D5e-05 gene gene647 http://www.ncbi.nlm.nih.gov/gene/?term=RB1216 RB12160 RB12160 trxA trxA 6562778 6563104 - thioredoxin PMID: 1379743 PMID: 3891733 PMID: 6099324 best DB hits: BLAST: swissprot:P00274%3B THIO_ECOLI THIOREDOXIN 1 (TRX1) (TRX) -----%3B E%3D3e-26 gb:AAG58975.1%3B AE005609_7 (AE005609) thioredoxin 1 [Escherichia%3B E%3D3e-26 pdb:2TRX%3B A Chain A%2C Thioredoxin ----- pdb: 2TRX B Chain B%2C%3B E%3D3e-26 COG: trxA%3B COG0526 Thiol-disulfide isomerase and thioredoxins%3B E%3D3e-27 PFAM: PF02114%3B Phosducin%3B E%3D0.01 PF00085%3B Thioredoxin%3B E%3D3.3e-47 gene gene6765 http://www.ncbi.nlm.nih.gov/gene/?term=RB12160 RB12164 RB12164 RB12164 6563352 6564185 - mutator protein MutT PMID: 9389475 PMID: 93015679 best DB hits: BLAST: gb:AAB89052.1%3B (AE000953) mutator protein MutT%2C %3B E%3D2e-04 swissprot:Q23236%3B YPAI_CAEEL HYPOTHETICAL 21.3 KD PROTEIN Y38A8.1%3B E%3D2e-04 ddbj:BAB05000.1%3B (AP001511) BH1281~~unknown conserved protein in%3B E%3D6e-04 COG: AF2200%3B COG0494 NTP pyrophosphohydrolases including oxidative damage%3B E%3D2e-05 sll1054%3B COG0494 NTP pyrophosphohydrolases including oxidative%3B E%3D0.005 mutT%3B COG0494 NTP pyrophosphohydrolases including oxidative damage%3B E%3D0.007 PFAM: PF00293%3B MutT-like domain%3B E%3D7.1e-16 gene gene6766 http://www.ncbi.nlm.nih.gov/gene/?term=RB12164 RB12167 RB12167 RB12167 6564302 6565081 - hypothetical protein gene gene6767 http://www.ncbi.nlm.nih.gov/gene/?term=RB12167 RB12168 RB12168 RB12168 6565221 6565736 - hypothetical protein gene gene6768 http://www.ncbi.nlm.nih.gov/gene/?term=RB12168 RB12172 RB12172 RB12172 6565829 6566260 - hypothetical protein gene gene6769 http://www.ncbi.nlm.nih.gov/gene/?term=RB12172 RB12174 RB12174 flgI flgI 6566298 6567437 - flagellar P-ring protein PMID: 7921252 best DB hits: BLAST: pir:E81292%3B flagellar P-ring protein Cj1462 [imported] -%3B E%3D5e-16 pir:G72242%3B flagellar P-ring protein - Thermotoga maritima (strain%3B E%3D2e-11 pir:A71957%3B flagellar P-ring protein - Helicobacter pylori (strain%3B E%3D3e-11 COG: Cj1462%3B COG1706 Flagellar basal-body P-ring protein%3B E%3D5e-17 PFAM: PF02119%3B Flagellar P-ring protein%3B E%3D0.00098 gene gene6770 http://www.ncbi.nlm.nih.gov/gene/?term=RB12174 RB12175 RB12175 flgH flgH 6567437 6568342 - flagellar L-ring protein precursor FlgH PMID: 2211524 PMID: 9161424 PMID: 7921252 best DB hits: BLAST: pir:A83511%3B flagellar L-ring protein precursor FlgH PA1083%3B E%3D2e-08 swissprot:O67609%3B FLGH_AQUAE FLAGELLAR L-RING PROTEIN PRECURSOR%3B E%3D6e-08 gb:AAG29750.1%3B AF205139_2 (AF205139) flagellar L-ring protein%3B E%3D3e-06 COG: PA1083%3B COG2063 Flagellar basal body L-ring protein%3B E%3D2e-09 PFAM: PF02107%3B Flagellar L-ring protein%3B E%3D7.9e-15 gene gene6771 http://www.ncbi.nlm.nih.gov/gene/?term=RB12175 RB12178 RB12178 RB12178 6568324 6569757 - flagellar basal body P-ring biosynthesis protein FlgA PMID: 10832645 best DB hits: BLAST: pir:C83227%3B hypothetical protein PA3350 [imported] - Pseudomonas%3B E%3D4e-04 gb:AAA97472.1%3B (U51896) LfgA [Vibrio parahaemolyticus]%3B E%3D0.012 COG: PA3350%3B COG1261 Flagellar basal body P-ring biosynthesis protein%3B E%3D4e-05 gene gene6772 http://www.ncbi.nlm.nih.gov/gene/?term=RB12178 RB12180 RB12180 flgG flgG 6569761 6570567 - flagellar hook basal body protein flgG PMID: 2129540 best DB hits: BLAST: pir:C70372%3B flagellar hook basal body protein flgG - Aquifex%3B E%3D3e-55 pir:A64718%3B flagellar basal body rod protein flgG - Helicobacter%3B E%3D2e-51 pir:F71801%3B flagellar basal-body rod protein (distal rod protein) -%3B E%3D4e-51 COG: aq_834%3B COG1749 Flagellar basal body and hook proteins%3B E%3D2e-56 PFAM: PF00460%3B Flagella basal body rod protein%3B E%3D4.1e-13 gene gene6773 http://www.ncbi.nlm.nih.gov/gene/?term=RB12180 RB12181 RB12181 flgF flgF 6570608 6571429 - FlgF PMID: 10411267 best DB hits: BLAST: gb:AAB71784.1%3B (U95165) FlgF [Agrobacterium tumefaciens]%3B E%3D1e-17 ddbj:BAB06168.1%3B (AP001515) flagellar hook protein [Bacillus%3B E%3D1e-16 swissprot:Q06171%3B FLGF_CAUCR FLAGELLAR BASAL-BODY ROD PROTEIN FLGF%3B E%3D3e-16 COG: BH2449%3B COG1749 Flagellar basal body and hook proteins%3B E%3D1e-17 PFAM: PF00460%3B Flagella basal body rod protein%3B E%3D0.00036 gene gene6774 http://www.ncbi.nlm.nih.gov/gene/?term=RB12181 RB12183 RB12183 RB12183 6571799 6573556 - hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:F82960%3B hypothetical protein PA5487 [imported] - Pseudomonas%3B E%3D8e-27 pir:A71678%3B probable response regulatory protein RP237 - Rickettsia%3B E%3D7e-22 pir:C83247%3B hypothetical protein PA3177 [imported] - Pseudomonas%3B E%3D2e-21 COG: PA5487%3B COG2199 Diguanylate cyclase/phosphodiesterase domain 1%3B E%3D8e-28 PFAM: PF00990%3B GGDEF domain%3B E%3D2.8e-45 gene gene6775 http://www.ncbi.nlm.nih.gov/gene/?term=RB12183 RB12188 RB12188 RB12188 6573557 6573865 + hypothetical protein gene gene6776 http://www.ncbi.nlm.nih.gov/gene/?term=RB12188 RB12189 RB12189 RB12189 6573875 6574369 + hypothetical protein gene gene6777 http://www.ncbi.nlm.nih.gov/gene/?term=RB12189 RB12190 RB12190 RB12190 6574386 6574535 + hypothetical protein gene gene6778 http://www.ncbi.nlm.nih.gov/gene/?term=RB12190 RB12191 RB12191 RB12191 6574497 6575870 - asparagine synthase best DB hits: BLAST: pir:T16625%3B asparagine synthase (glutamine-hydrolyzing) (EC 6.3.5.4)%3B E%3D0.030 gb:AAC25799.1%3B (AF022973) Contains similarity to Pfam domain:%3B E%3D0.29 ddbj:BAB05227.1%3B (AP001512) asparagine synthetase [Bacillus%3B E%3D0.39 PFAM: PF00733%3B Asparagine synthase%3B E%3D0.75 gene gene6779 http://www.ncbi.nlm.nih.gov/gene/?term=RB12191 RB12193 RB12193 RB12193 6575867 6575977 - hypothetical protein gene gene6780 http://www.ncbi.nlm.nih.gov/gene/?term=RB12193 RB12194 RB12194 hemH hemH 6575974 6576972 - phosphoribosylaminoimidazole-succinocarboxamide synthase catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis%3B SAICAR synthase gene gene6781 http://www.ncbi.nlm.nih.gov/gene/?term=RB12194 RB12196 RB12196 RB12196 6576929 6577078 - hypothetical protein gene gene6782 http://www.ncbi.nlm.nih.gov/gene/?term=RB12196 RB12197 RB12197 infC infC 6577129 6577659 - translation initiation factor IF-3 PMID: 9784136 PMID: 1457399 best DB hits: BLAST: pir:A71465%3B probable translation initiation factor IF-3 - Chlamydia%3B E%3D3e-28 swissprot:O84840%3B IF3_CHLTR TRANSLATION INITIATION FACTOR IF-3%3B E%3D4e-27 pir:C81727%3B translation initiation factor 3 TC0221 [imported] -%3B E%3D7e-27 COG: CT833%3B COG0290 Translation initiation factor IF3%3B E%3D3e-29 PFAM: PF00707%3B Translation initiation factor IF-3%3B E%3D1.4e-74 gene gene6783 http://www.ncbi.nlm.nih.gov/gene/?term=RB12197 RB12199 RB12199 RB12199 6577614 6577778 + hypothetical protein gene gene6784 http://www.ncbi.nlm.nih.gov/gene/?term=RB12199 RB1220 RB1220 galM galM 622840 623925 + aldose 1-epimerase PMID: 3531172 best DB hits: BLAST: swissprot:P05149%3B GALM_ACICA ALDOSE 1-EPIMERASE PRECURSOR%3B E%3D4e-63 embl:CAB62739.1%3B (AL133423) aldose 1-epimerase%3B E%3D3e-62 pir:H72395%3B probable aldose 1-epimerase (EC 5.1.3.3) - Thermotoga%3B E%3D5e-62 COG: TM0282%3B COG2017 Galactose mutarotase and related enzymes%3B E%3D4e-63 PFAM: PF01263%3B Aldose 1-epimerase%3B E%3D1.4e-102 gene gene648 http://www.ncbi.nlm.nih.gov/gene/?term=RB1220 RB12200 RB12200 RB12200 6577800 6577955 - hypothetical protein gene gene6785 http://www.ncbi.nlm.nih.gov/gene/?term=RB12200 RB12201 RB12201 RB12201 6577952 6578161 - hypothetical protein best DB hits: BLAST: embl:CAB71199.1%3B (AL138538) sugar hydrolase%3B E%3D0.77 gene gene6786 http://www.ncbi.nlm.nih.gov/gene/?term=RB12201 RB12202 RB12202 RB12202 6578185 6579810 - integrase-recombinase PMID: 9082984 best DB hits: BLAST: swissprot:P55636%3B Y4RC_RHISN INTEGRASERECOMBINASE Y4RC%3B E%3D1e-04 pir:D72312%3B integrase-recombinase - Thermotoga maritima%3B E%3D2e-04 gb:AAF64651.1%3B AF200320_1 (AF200320) IntA [Bradyrhizobium%3B E%3D3e-04 COG: TM0967%3B COG0582 Integrase%3B E%3D2e-05 PFAM: PF00589%3B Phage integrase%3B E%3D4.8e-15 gene gene6788 http://www.ncbi.nlm.nih.gov/gene/?term=RB12202 RB12204 RB12204 RB12204 6579810 6580163 - hypothetical protein gene gene6789 http://www.ncbi.nlm.nih.gov/gene/?term=RB12204 RB12205 RB12205 RB12205 6580225 6580875 - hypothetical protein best DB hits: PFAM: PF01381%3B Helix-turn-helix%3B E%3D8.3e-05 gene gene6790 http://www.ncbi.nlm.nih.gov/gene/?term=RB12205 RB12206 RB12206 RB12206 6580879 6581034 - hypothetical protein gene gene6791 http://www.ncbi.nlm.nih.gov/gene/?term=RB12206 RB12208 RB12208 RB12208 6581058 6581447 + hypothetical protein gene gene6792 http://www.ncbi.nlm.nih.gov/gene/?term=RB12208 RB12209 RB12209 RB12209 6581329 6581661 - transcriptional regulator PMID: 11226165 best DB hits: BLAST: swissprot:Q57615%3B Y151_METJA HYPOTHETICAL TRANSCRIPTIONAL%3B E%3D0.77 PFAM: PF00356%3B Bacterial regulatory proteins%2C%3B E%3D0.089 PF01325%3B Iron dependent repressor%2C N-te%3B E%3D0.048 gene gene6793 http://www.ncbi.nlm.nih.gov/gene/?term=RB12209 RB12211 RB12211 dnaB dnaB 6581658 6582578 - replicative DNA helicase PMID: 6323420 best DB hits: BLAST: pir:E83029%3B replicative DNA helicase PA4931 [imported] - Pseudomonas%3B E%3D6e-04 swissprot:Q9ZJM5%3B DNAB_HELPJ REPLICATIVE DNA HELICASE -----%3B E%3D0.002 gb:AAK00231.1%3B AF229444_1 (AF229444) replicative DNA helicase DnaB%3B E%3D0.003 COG: PA4931%3B COG0305 Replicative DNA helicase%3B E%3D6e-05 PFAM: PF00772%3B DnaB-like helicase%3B E%3D4.3e-05 gene gene6794 http://www.ncbi.nlm.nih.gov/gene/?term=RB12211 RB12213 RB12213 RB12213 6582575 6583543 - hypothetical protein gene gene6795 http://www.ncbi.nlm.nih.gov/gene/?term=RB12213 RB12214 RB12214 RB12214 6583543 6584118 - hypothetical protein gene gene6796 http://www.ncbi.nlm.nih.gov/gene/?term=RB12214 RB12215 RB12215 RB12215 6584102 6584611 - hypothetical protein gene gene6797 http://www.ncbi.nlm.nih.gov/gene/?term=RB12215 RB12217 RB12217 RB12217 6584735 6584932 - hypothetical protein gene gene6798 http://www.ncbi.nlm.nih.gov/gene/?term=RB12217 RB12219 RB12219 RB12219 6584993 6586411 - hypothetical protein gene gene6799 http://www.ncbi.nlm.nih.gov/gene/?term=RB12219 RB1222 RB1222 RB1222 623906 624094 + hypothetical protein gene gene649 http://www.ncbi.nlm.nih.gov/gene/?term=RB1222 RB12220 RB12220 RB12220 6586512 6587027 - hypothetical protein gene gene6800 http://www.ncbi.nlm.nih.gov/gene/?term=RB12220 RB12221 RB12221 RB12221 6586973 6587167 - hypothetical protein gene gene6801 http://www.ncbi.nlm.nih.gov/gene/?term=RB12221 RB12223 RB12223 RB12223 6587469 6588230 + hypothetical protein gene gene6802 http://www.ncbi.nlm.nih.gov/gene/?term=RB12223 RB12227 RB12227 RB12227 6588366 6588806 - hypothetical protein best DB hits: BLAST: pir:T35737%3B probable integral membrane protein - Streptomyces%3B E%3D0.006 gene gene6803 http://www.ncbi.nlm.nih.gov/gene/?term=RB12227 RB12229 RB12229 RB12229 6588840 6589403 - hypothetical protein gene gene6804 http://www.ncbi.nlm.nih.gov/gene/?term=RB12229 RB1223 RB1223 RB1223 624091 624312 + hypothetical protein gene gene650 http://www.ncbi.nlm.nih.gov/gene/?term=RB1223 RB12231 RB12231 RB12231 6589721 6590035 - hypothetical protein gene gene6805 http://www.ncbi.nlm.nih.gov/gene/?term=RB12231 RB12232 RB12232 RB12232 6590023 6590160 + hypothetical protein gene gene6806 http://www.ncbi.nlm.nih.gov/gene/?term=RB12232 RB12233 RB12233 RB12233 6590157 6590510 + hypothetical protein gene gene6807 http://www.ncbi.nlm.nih.gov/gene/?term=RB12233 RB12234 RB12234 RB12234 6590661 6590993 - hypothetical protein gene gene6808 http://www.ncbi.nlm.nih.gov/gene/?term=RB12234 RB12236 RB12236 RB12236 6590935 6591546 + hypothetical protein gene gene6809 http://www.ncbi.nlm.nih.gov/gene/?term=RB12236 RB12238 RB12238 osmY osmY 6591383 6593143 + osmotically inducible protein Y PMID: 1317380 best DB hits: BLAST: swissprot:P27291%3B OSMY_ECOLI OSMOTICALLY INDUCIBLE PROTEIN Y%3B E%3D4e-05 gb:AAG59556.1%3B AE005668_11 (AE005668) hyperosmotically inducible%3B E%3D8e-05 gb:AAD56642.1%3B AF178441_1 (AF178441) Smc22-1 [Sinorhizobium%3B E%3D2e-04 COG: osmY%3B COG2823 Predicted periplasmic or secreted lipoprotein%3B E%3D4e-06 gene gene6810 http://www.ncbi.nlm.nih.gov/gene/?term=RB12238 RB12239 RB12239 RB12239 6593334 6594635 + transposase PMID: 9043130 best DB hits: BLAST: gb:AAD45539.1%3B U70376_1 (U70376) InsA [Streptomyces netropsis]%3B E%3D5e-33 gb:AAG60893.1%3B AF322013_12 (AF322013) ID460 [Bradyrhizobium%3B E%3D8e-33 ddbj:BAA19966.1%3B (D63923) transposase [Acetobacter pasteurianus]%3B E%3D1e-26 gene gene6811 http://www.ncbi.nlm.nih.gov/gene/?term=RB12239 RB1224 RB1224 RB1224 624415 624528 + hypothetical protein gene gene651 http://www.ncbi.nlm.nih.gov/gene/?term=RB1224 RB12240 RB12240 RB12240 6594646 6594798 + hypothetical protein gene gene6812 http://www.ncbi.nlm.nih.gov/gene/?term=RB12240 RB12241 RB12241 RB12241 6594886 6596139 - chondroitinase B best DB hits: BLAST: pdb:1DBO%3B A Chain A%2C Crystal Structure Of Chondroitinase B -----%3B E%3D0.049 gene gene6813 http://www.ncbi.nlm.nih.gov/gene/?term=RB12241 RB12243 RB12243 RB12243 6596256 6596423 + hypothetical protein gene gene6814 http://www.ncbi.nlm.nih.gov/gene/?term=RB12243 RB12245 RB12245 RB12245 6596420 6596815 + hypothetical protein gene gene6815 http://www.ncbi.nlm.nih.gov/gene/?term=RB12245 RB12247 RB12247 RB12247 6596824 6597048 - hypothetical protein best DB hits: BLAST: gb:AAG19657.1%3B (AE005054) Vng1314h [Halobacterium sp. NRC-1]%3B E%3D3e-12 gene gene6816 http://www.ncbi.nlm.nih.gov/gene/?term=RB12247 RB1225 RB1225 dpp4 dpp4 624513 627017 - dipeptidyl peptidase IV PMID: 7793970 best DB hits: BLAST: pir:S66261%3B X-Pro dipeptidyl-peptidase (EC 3.4.14.11) -%3B E%3D6e-59 ddbj:BAA28265.1%3B (AB008194) DPP IV [Porphyromonas gingivalis]%3B E%3D2e-54 gb:AAC46184.1%3B (AF026511) dipeptidyl peptidase IV [Porphyromonas%3B E%3D7e-54 COG: YHR028c%3B COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases%3B E%3D2e-30 BH0879%3B COG2267 Lysophospholipase%3B E%3D0.002 PH0863%3B COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases%3B E%3D0.002 PFAM: PF00930%3B Dipeptidyl peptidase IV (DPP IV)%3B E%3D5.3e-44 PF00326%3B Prolyl oligopeptidase%3B E%3D0.84 gene gene652 http://www.ncbi.nlm.nih.gov/gene/?term=RB1225 RB12250 RB12250 RB12250 6597248 6597562 + hypothetical protein PMID: 10952301 best DB hits: BLAST: pir:H82471%3B hypothetical protein VCA0329 VCA0298 VCA0343%3B E%3D4e-11 gene gene6817 http://www.ncbi.nlm.nih.gov/gene/?term=RB12250 RB12251 RB12251 RB12251 6597559 6599262 - RNA polymerase ECF-type sigma factor PMID: 7768826 best DB hits: BLAST: swissprot:P46358%3B RFAY_XANCP PROBABLE RNA POLYMERASE SIGMA FACTOR%3B E%3D2e-22 ddbj:BAB03982.1%3B (AP001507) RNA polymerase ECF-type sigma factor%3B E%3D7e-15 swissprot:Q45585%3B SIGW_BACSU RNA POLYMERASE SIGMA FACTOR SIGW%3B E%3D4e-14 COG: BH0263%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D6e-16 PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D6.8e-12 gene gene6818 http://www.ncbi.nlm.nih.gov/gene/?term=RB12251 RB12255 RB12255 RB12255 6599415 6599696 - hypothetical protein gene gene6819 http://www.ncbi.nlm.nih.gov/gene/?term=RB12255 RB12256 RB12256 RB12256 6599656 6600402 - membrane-associated phospholipid phosphatase best DB hits: BLAST: pir:S32217%3B hypothetical protein 2 - Bacillus megaterium -----%3B E%3D4e-16 pir:A82542%3B conserved hypothetical protein XF2574 [imported] -%3B E%3D5e-14 pir:D75404%3B phosphatidylglycerophosphatase B-related protein -%3B E%3D4e-13 COG: XF2574%3B COG0671 Membrane-associated phospholipid phosphatase%3B E%3D5e-15 PFAM: PF01569%3B PAP2 superfamily%3B E%3D1.4e-30 gene gene6820 http://www.ncbi.nlm.nih.gov/gene/?term=RB12256 RB12260 RB12260 RB12260 6600532 6600777 - signal peptide gene gene6821 http://www.ncbi.nlm.nih.gov/gene/?term=RB12260 RB12262 RB12262 fhp fhp 6600710 6601963 + nitric oxide dioxygenase flavohemoprotein%3B catalyzes the formation of nitrate from nitric oxide%3B can also catalyze the reduction of dihydropteridine gene gene6822 http://www.ncbi.nlm.nih.gov/gene/?term=RB12262 RB12264 RB12264 RB12264 6602070 6602405 + hypothetical protein PMID: 9371463 best DB hits: BLAST: pir:D69060%3B hypothetical protein MTH1452 - Methanobacterium%3B E%3D5e-12 gb:AAG09974.1%3B AF248038_3 (AF248038) unknown [Streptococcus%3B E%3D5e-10 pir:D70381%3B hypothetical protein aq_943 - Aquifex aeolicus -----%3B E%3D0.017 COG: MTH1452%3B COG1917 Uncharacterized ACR%2C double-stranded beta-helix%3B E%3D5e-13 gene gene6823 http://www.ncbi.nlm.nih.gov/gene/?term=RB12264 RB12265 RB12265 RB12265 6602402 6602530 - hypothetical protein gene gene6824 http://www.ncbi.nlm.nih.gov/gene/?term=RB12265 RB12266 RB12266 RB12266 6602558 6602755 + hypothetical protein gene gene6825 http://www.ncbi.nlm.nih.gov/gene/?term=RB12266 RB12267 RB12267 RB12267 6602697 6602951 + pressure-regulated protein PMID: 8824840 best DB hits: BLAST: pir:JC4545%3B hypothetical 7.9k protein - Barophilic bacterium%3B E%3D4e-18 ddbj:BAA11902.1%3B (D83386) ORF1 [Shewanella violacea]%3B E%3D3e-17 ddbj:BAA25109.1%3B (D88194) pressure-regulated ORF1 [Mariana%3B E%3D0.006 gene gene6826 http://www.ncbi.nlm.nih.gov/gene/?term=RB12267 RB12268 RB12268 RB12268 6602929 6603069 - hypothetical protein gene gene6827 http://www.ncbi.nlm.nih.gov/gene/?term=RB12268 RB12269 RB12269 RB12269 6603109 6603225 - hypothetical protein gene gene6828 http://www.ncbi.nlm.nih.gov/gene/?term=RB12269 RB12271 RB12271 RB12271 6603241 6604980 + signal peptide gene gene6829 http://www.ncbi.nlm.nih.gov/gene/?term=RB12271 RB12276 RB12276 RB12276 6605112 6605444 + hypothetical protein PMID: 11759840 best DB hits: BLAST: gb:AAC04411.1%3B (AF047657) F37B4.8 gene product [Caenorhabditis%3B E%3D0.22 gene gene6830 http://www.ncbi.nlm.nih.gov/gene/?term=RB12276 RB12278 RB12278 RB12278 6605390 6605548 + hypothetical protein gene gene6831 http://www.ncbi.nlm.nih.gov/gene/?term=RB12278 RB12279 RB12279 RB12279 6605545 6606558 - small-conductance mechanosensitive channel PMID: 11296222 best DB hits: BLAST: pir:S76700%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D1e-41 pir:F75546%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D3e-09 gb:AAG19543.1%3B (AE005044) Vng1164c [Halobacterium sp. NRC-1]%3B E%3D9e-08 COG: slr0109%3B COG0668 Small-conductance mechanosensitive channel%3B E%3D9e-43 PA5022%3B COG3264 Small-conductance mechanosensitive channel%3B E%3D2e-05 TP0822%3B COG0668 Small-conductance mechanosensitive channel%3B E%3D3e-05 PFAM: PF00924%3B Uncharacterized protein family UPF00%3B E%3D2.1e-24 gene gene6832 http://www.ncbi.nlm.nih.gov/gene/?term=RB12279 RB12281 RB12281 RB12281 6606519 6607739 - hypothetical protein gene gene6833 http://www.ncbi.nlm.nih.gov/gene/?term=RB12281 RB12282 RB12282 RB12282 6607884 6609191 - permease best DB hits: BLAST: embl:CAB83202.1%3B (AJ277117) membrane protein%3B E%3D4e-35 pir:H82825%3B transport protein XF0281 [imported] - Xylella fastidiosa%3B E%3D8e-26 swissprot:O34472%3B YRRI_BACSU HYPOTHETICAL 39.6 KDA PROTEIN IN%3B E%3D2e-13 COG: XF0281%3B COG0628 Predicted permease%3B E%3D7e-27 PFAM: PF01594%3B Domain of unknown function DUF20%3B E%3D0.3 gene gene6834 http://www.ncbi.nlm.nih.gov/gene/?term=RB12282 RB12283 RB12283 RB12283 6609220 6609378 + hypothetical protein gene gene6835 http://www.ncbi.nlm.nih.gov/gene/?term=RB12283 RB12285 RB12285 RB12285 6609391 6610065 + dimethyladenosine transferase (rRNA methylation) PMID: 10484179 best DB hits: BLAST: ddbj:BAB05775.1%3B (AP001514) BH2056~~unknown conserved protein in%3B E%3D1e-12 pir:T45542%3B hypothetical protein [imported] - Klebsiella pneumoniae%3B E%3D1e-08 gb:AAG10237.1%3B AF201699_2 (AF201699) phospholipid%3B E%3D6e-05 COG: BH2056%3B COG0030 Dimethyladenosine transferase (rRNA methylation)%3B E%3D1e-13 Rv2622%3B COG0500 SAM-dependent methyltransferases%3B E%3D6e-04 gene gene6836 http://www.ncbi.nlm.nih.gov/gene/?term=RB12285 RB12286 RB12286 RB12286 6610120 6610293 - hypothetical protein gene gene6837 http://www.ncbi.nlm.nih.gov/gene/?term=RB12286 RB12287 RB12287 RB12287 6610364 6611110 + signal peptide best DB hits: PFAM: PF00339%3B Arrestin (or S-antigen)%2C N-terminal%3B E%3D0.73 gene gene6838 http://www.ncbi.nlm.nih.gov/gene/?term=RB12287 RB12289 RB12289 RB12289 6611074 6611199 - hypothetical protein gene gene6839 http://www.ncbi.nlm.nih.gov/gene/?term=RB12289 RB12290 RB12290 pntB pntB 6611214 6612575 - NAD(P) transhydrogenase subunit beta PMID: 3525165 PMID: 1633824 best DB hits: BLAST: prf:2102322C%3B energy-transducing nicotinamide nucleotide%3B E%3D5e-91 pir:T18520%3B transhydrogenase homolog 7B2 - Eimeria tenella -----%3B E%3D1e-88 pir:A81885%3B probable NAD(P)+ transhydrogenase (B-specific) (EC%3B E%3D1e-87 COG: NMB0978%3B COG1282 NAD/NADP transhydrogenase beta subunit%3B E%3D6e-88 PFAM: PF02233%3B NAD(P) transhydrogenase beta subunit%3B E%3D1.1e-206 gene gene6840 http://www.ncbi.nlm.nih.gov/gene/?term=RB12290 RB12291 RB12291 RB12291 6612572 6612871 - NAD(P) transhydrogenase subunit alpha PMID: 3525165 PMID: 1633824 best DB hits: BLAST: pir:G70618%3B probable pntAB protein - Mycobacterium tuberculosis%3B E%3D1e-09 pir:S77433%3B NAD(P)+ transhydrogenase (B-specific) (EC 1.6.1.1) alpha%3B E%3D2e-08 prf:2102322B%3B energy-transducing nicotinamide nucleotide%3B E%3D7e-07 COG: Rv0156%3B COG3288 NAD/NADP transhydrogenase alpha subunit%3B E%3D1e-10 gene gene6841 http://www.ncbi.nlm.nih.gov/gene/?term=RB12291 RB12292 RB12292 pntA pntA 6612905 6614041 - NAD(P) transhydrogenase subunit alpha PMID: 3525165 PMID: 1633824 best DB hits: BLAST: prf:2102322A%3B energy-transducing nicotinamide nucleotide%3B E%3D8e-76 pir:S77433%3B NAD(P)+ transhydrogenase (B-specific) (EC 1.6.1.1) alpha%3B E%3D9e-74 gb:AAK00588.1%3B (AY026033) pyridine nucleotide transhydrogenase%3B E%3D1e-72 COG: slr1239%3B COG3288 NAD/NADP transhydrogenase alpha subunit%3B E%3D9e-75 BH2329%3B COG0686 Alanine dehydrogenase%3B E%3D4e-26 PFAM: PF01266%3B D-amino acid oxidase%3B E%3D0.05 PF00070%3B Pyridine nucleotide-disulphide oxid%3B E%3D0.00011 PF01262%3B Alanine dehydrogenase/pyridine nucl%3B E%3D5.4e-89 gene gene6842 http://www.ncbi.nlm.nih.gov/gene/?term=RB12292 RB12295 RB12295 RB12295 6614190 6614450 + hypothetical protein gene gene6843 http://www.ncbi.nlm.nih.gov/gene/?term=RB12295 RB12296 RB12296 RB12296 6614403 6615422 - ketoacyl reductase PMID: 2583128 best DB hits: BLAST: pir:F75374%3B probable ketoacyl reductase - Deinococcus radiodurans%3B E%3D4e-49 gb:AAF18286.1%3B (AF088897) oxidoreductase%3B orf4 [Zymomonas%3B E%3D5e-25 swissprot:P37694%3B HETN_ANASP KETOACYL REDUCTASE HETN -----%3B E%3D2e-22 COG: DR1620%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D4e-50 slr0315%3B COG1028 Dehydrogenases with different specificities%3B E%3D5e-21 PA1537%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D8e-21 PFAM: PF00106%3B short chain dehydrogenase%3B E%3D3.2e-61 gene gene6844 http://www.ncbi.nlm.nih.gov/gene/?term=RB12296 RB12297 RB12297 RB12297 6615598 6616107 + hypothetical protein gene gene6845 http://www.ncbi.nlm.nih.gov/gene/?term=RB12297 RB123 RB123 RB123 52395 53687 - hypothetical protein PMID: 1738317 gene gene67 http://www.ncbi.nlm.nih.gov/gene/?term=RB123 RB1230 RB1230 RB1230 626975 627328 - hypothetical protein gene gene653 http://www.ncbi.nlm.nih.gov/gene/?term=RB1230 RB12301 RB12301 RB12301 6616214 6616765 + hypothetical protein PMID: 9371463 best DB hits: BLAST: pir:D69230%3B hypothetical protein MTH974 - Methanobacterium%3B E%3D0.81 gene gene6846 http://www.ncbi.nlm.nih.gov/gene/?term=RB12301 RB12303 RB12303 RB12303 6616882 6618759 - serine/threonine protein kinase related protein best DB hits: BLAST: pir:H69064%3B serinethreonine protein kinase related protein -%3B E%3D3e-04 gb:AAG20856.1%3B (AE005154) Vng6189h [Halobacterium sp. NRC-1]%3B E%3D0.007 gb:AAF16758.1%3B AC010155_11 (AC010155) F3M18.23 [Arabidopsis%3B E%3D0.014 COG: MTH1485%3B COG1520 Uncharacterized proteins of WD40-like repeat family%3B E%3D3e-05 PFAM: PF01011%3B PQQ enzyme repeat%3B E%3D0.0074 gene gene6847 http://www.ncbi.nlm.nih.gov/gene/?term=RB12303 RB12305 RB12305 RB12305 6618856 6620247 - receptor protein kinase-like protein PMID: 10048488 best DB hits: BLAST: ddbj:BAB10826.1%3B (AB016892) receptor protein kinase-like protein%3B E%3D0.011 embl:CAB51834.1%3B (AJ243961) contains eukaryotic protein kinase%3B E%3D0.057 gb:AAG50525.1%3B AC084221_7 (AC084221) hypothetical protein%3B E%3D0.28 gene gene6848 http://www.ncbi.nlm.nih.gov/gene/?term=RB12305 RB1231 RB1231 lpd lpd 627346 628773 - dihydrolipoamide dehydrogenase PMID: 6352260 PMID: 2211531 best DB hits: BLAST: pir:A82753%3B dihydrolipoamide dehydrogenase XF0868 [imported] -%3B E%3D1e-102 swissprot:O50286%3B DLDH_VIBPA DIHYDROLIPOAMIDE DEHYDROGENASE (E3%3B E%3D1e-102 swissprot:P00391%3B DLDH_ECOLI DIHYDROLIPOAMIDE DEHYDROGENASE (E3%3B E%3D1e-101 COG: XF0868_2%3B COG1249 Dihydrolipoamide dehydrogenase/glutathione%3B E%3D1e-103 PFAM: PF02032%3B Phytoene dehydrogenase related%3B E%3D0.00021 PF00070%3B Pyridine nucleotide-disulphide%3B E%3D2.6e-75 PF02852%3B Pyridine nucleotide-disulphide%3B E%3D8.6e-41 gene gene654 http://www.ncbi.nlm.nih.gov/gene/?term=RB1231 RB12310 RB12310 RB12310 6620454 6622730 - serine/threonine-protein kinase PMID: 1835671 PMID: 7768349 best DB hits: BLAST: swissprot:P54744%3B PKNB_MYCLE SERINETHREONINE-PROTEIN%3B E%3D2e-35 swissprot:P71584%3B PKNB_MYCTU SERINETHREONINE-PROTEIN%3B E%3D2e-35 pir:T36717%3B probable serinethreonine protein kinase - Streptomyces%3B E%3D1e-32 COG: Rv0014c_1%3B COG0515 Serine/threonine protein kinases%3B E%3D2e-36 PFAM: PF00069%3B Protein kinase domain%3B E%3D8.9e-53 gene gene6849 http://www.ncbi.nlm.nih.gov/gene/?term=RB12310 RB12312 RB12312 RB12312 6622715 6622885 - hypothetical protein gene gene6850 http://www.ncbi.nlm.nih.gov/gene/?term=RB12312 RB12313 RB12313 RB12313 6622846 6623412 - extracytoplasmic sigma factor ECF PMID: 11936079 PMID: 3052291 best DB hits: BLAST: embl:CAB72200.1%3B (AL138851) RNA polymerase sigma factor%3B E%3D0.060 PFAM: PF00196%3B Bacterial regulatory proteins%3B E%3D0.59 gene gene6851 http://www.ncbi.nlm.nih.gov/gene/?term=RB12313 RB12314 RB12314 RB12314 6623400 6623609 - hypothetical protein gene gene6852 http://www.ncbi.nlm.nih.gov/gene/?term=RB12314 RB12315 RB12315 maa maa 6623653 6624207 + maltose O-acetyltransferase PMID: 1856235 best DB hits: BLAST: ddbj:BAB06720.1%3B (AP001517) maltose transacetylase (maltose%3B E%3D3e-44 swissprot:P37515%3B MAA_BACSU PROBABLE MALTOSE O-ACETYLTRANSFERASE%3B E%3D1e-43 swissprot:P77791%3B MAA_ECOLI MALTOSE O-ACETYLTRANSFERASE (MALTOSE%3B E%3D3e-40 COG: BH3001%3B COG0110 Acetyltransferases (the isoleucine patch%3B E%3D3e-45 ylaD%3B COG0110 Acetyltransferases (the isoleucine patch superfamily)%3B E%3D3e-41 YJL218w%3B COG0110 Acetyltransferases (the isoleucine patch%3B E%3D3e-34 PFAM: PF00132%3B Bacterial transferase hexapeptide (f%3B E%3D0.62 gene gene6853 http://www.ncbi.nlm.nih.gov/gene/?term=RB12315 RB12316 RB12316 RB12316 6624359 6625243 - chitooligosaccharide deacetylase best DB hits: BLAST: pir:A70081%3B conserved hypothetical protein yxkH - Bacillus subtilis%3B E%3D0.24 gb:AAK00156.1%3B AF222753_11 (AF222753) nodulation%3B E%3D0.50 pir:T50960%3B related to nodulation protein nodB [imported] -%3B E%3D0.69 PFAM: PF01522%3B Polysaccharide deacetylase%3B E%3D0.0074 gene gene6854 http://www.ncbi.nlm.nih.gov/gene/?term=RB12316 RB12317 RB12317 RB12317 6625234 6625413 + hypothetical protein gene gene6855 http://www.ncbi.nlm.nih.gov/gene/?term=RB12317 RB12318 RB12318 RB12318 6625398 6625565 - hypothetical protein gene gene6856 http://www.ncbi.nlm.nih.gov/gene/?term=RB12318 RB12319 RB12319 RB12319 6625514 6626077 - hypothetical protein gene gene6857 http://www.ncbi.nlm.nih.gov/gene/?term=RB12319 RB1232 RB1232 RB1232 628776 628901 + hypothetical protein gene gene655 http://www.ncbi.nlm.nih.gov/gene/?term=RB1232 RB12320 RB12320 RB12320 6625565 6625924 + signal peptide gene gene6858 http://www.ncbi.nlm.nih.gov/gene/?term=RB12320 RB12321 RB12321 RB12321 6626069 6626974 + hypothetical protein gene gene6859 http://www.ncbi.nlm.nih.gov/gene/?term=RB12321 RB12323 RB12323 RB12323 6627001 6627747 + hypothetical protein PMID: 10567266 best DB hits: BLAST: pir:F75410%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D0.084 gene gene6860 http://www.ncbi.nlm.nih.gov/gene/?term=RB12323 RB12324 RB12324 RB12324 6627713 6627901 - hypothetical protein gene gene6861 http://www.ncbi.nlm.nih.gov/gene/?term=RB12324 RB12325 RB12325 RB12325 6627940 6629529 + arylsulfatase PMID: 7910580 best DB hits: BLAST: swissprot:P50428%3B ARSA_MOUSE ARYLSULFATASE A PRECURSOR (ASA)%3B E%3D7e-41 embl:CAA36398.1%3B (X52150) arylsulphatase a [Homo sapiens]%3B E%3D1e-40 gb:AAB03341.1%3B (U62317) arylsulfatase A [Homo sapiens]%3B E%3D1e-40 COG: aslA%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D3e-26 PFAM: PF00884%3B Sulfatase%3B E%3D4.1e-39 gene gene6862 http://www.ncbi.nlm.nih.gov/gene/?term=RB12325 RB12326 RB12326 RB12326 6629618 6631774 + sensory histidine protein kinase PMID: 11406410 best DB hits: BLAST: gb:AAA98756.1%3B (L29642) sensor kinase [Pseudomonas fluorescens]%3B E%3D2e-45 pir:F83153%3B probable two-component sensor PA3946 [imported] -%3B E%3D3e-36 pir:E83265%3B probable two-component sensor PA3044 [imported] -%3B E%3D2e-35 COG: PA3044%3B COG0642 Sensory transduction histidine kinases%3B E%3D2e-36 PFAM: PF01590%3B GAF domain%3B E%3D3.2e-20 PF00989%3B PAS domain%3B E%3D1.2e-07 PF00512%3B His Kinase A (phosphoacceptor) d%3B E%3D4.8e-16 gene gene6863 http://www.ncbi.nlm.nih.gov/gene/?term=RB12326 RB12327 RB12327 pepT2 pepT2 6631858 6633918 - oligopeptide transporter%2C kidney isoform PMID: 8639691 best DB hits: BLAST: swissprot:Q63424%3B PET2_RAT OLIGOPEPTIDE TRANSPORTER%2C KIDNEY%3B E%3D4e-47 prf:2113198A%3B Hpeptide cotransporter [Homo sapiens]%3B E%3D7e-47 gb:AAF66614.1%3B AF142441_1 (AF142441) H+oligopeptide symporter%3B E%3D1e-46 COG: YKR093w%3B COG3104 Dipeptide/tripeptide permease%3B E%3D2e-24 PFAM: PF00854%3B POT family%3B E%3D6.4e-42 gene gene6864 http://www.ncbi.nlm.nih.gov/gene/?term=RB12327 RB12328 RB12328 RB12328 6633929 6634276 + hypothetical protein gene gene6865 http://www.ncbi.nlm.nih.gov/gene/?term=RB12328 RB12329 RB12329 RB12329 6634234 6634566 + hypothetical protein gene gene6866 http://www.ncbi.nlm.nih.gov/gene/?term=RB12329 RB1233 RB1233 rpsD rpsD 628870 629490 - 30S ribosomal protein S4 primary rRNA binding protein%3B nucleates 30S assembly%3B involved in translational accuracy with proteins S5 and S12%3B interacts with protein S5%3B involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA%3B interacts with transcription complex and functions similar to protein NusA in antitermination gene gene656 http://www.ncbi.nlm.nih.gov/gene/?term=RB1233 RB12331 RB12331 RB12331 6634742 6635035 + hypothetical protein gene gene6867 http://www.ncbi.nlm.nih.gov/gene/?term=RB12331 RB12333 RB12333 RB12333 6635037 6635258 - hypothetical protein gene gene6868 http://www.ncbi.nlm.nih.gov/gene/?term=RB12333 RB12334 RB12334 RB12334 6635356 6636156 - Zn-dependent protease best DB hits: BLAST: gb:AAB90905.1%3B (AE001082) conserved hypothetical protein%3B E%3D4e-06 embl:CAB59505.1%3B (AL132648) hypothetical protein SCI41.35c%3B E%3D6e-05 pir:A69209%3B conserved hypothetical protein MTH816 - Methanobacterium%3B E%3D0.001 COG: AF0332_1%3B COG1994 Zn-dependent proteases%3B E%3D6e-06 gene gene6869 http://www.ncbi.nlm.nih.gov/gene/?term=RB12334 RB12337 RB12337 RB12337 6636309 6638588 - prolyl endopeptidase PMID: 8370677 best DB hits: BLAST: pir:B75267%3B prolyl endopeptidase - Deinococcus radiodurans (strain%3B E%3D0.0 gb:AAD34991.1%3B (AF143951) prolyl endopeptidase [Aeromonas%3B E%3D1e-173 gb:AAF02211.1%3B (AF065429) prolyl endopeptidase [Aeromonas%3B E%3D1e-173 COG: DR2503%3B COG1505 Serine proteases of the peptidase S9A%3B E%3D0.0 PA1304%3B COG1770 Protease II (serine protease PtrB)%3B E%3D7e-45 NMB1877%3B COG1505 Serine proteases of the peptidase S9A%3B E%3D2e-38 PFAM: PF02897%3B Prolyl oligopeptidase%2C N-termi%3B E%3D2.7e-149 PF00326%3B Prolyl oligopeptidase%3B E%3D2.6e-40 gene gene6870 http://www.ncbi.nlm.nih.gov/gene/?term=RB12337 RB12338 RB12338 RB12338 6638649 6639182 - hypothetical protein gene gene6871 http://www.ncbi.nlm.nih.gov/gene/?term=RB12338 RB12340 RB12340 RB12340 6639175 6640056 - hypothetical protein gene gene6872 http://www.ncbi.nlm.nih.gov/gene/?term=RB12340 RB12342 RB12342 RB12342 6640053 6640721 - hypothetical protein gene gene6873 http://www.ncbi.nlm.nih.gov/gene/?term=RB12342 RB12343 RB12343 RB12343 6640732 6642447 - sucrose phosphorylase PMID: 1368718 best DB hits: BLAST: swissprot:P76041%3B SUCP_ECOLI SUCROSE PHOSPHORYLASE%3B E%3D1e-123 pir:H64879%3B probable membrane protein b1309 - Escherichia coli%3B E%3D1e-123 ddbj:BAA14878.1%3B (D90768) Sucrose phosphorylase (EC 2.4.1.7)%3B E%3D1e-121 COG: ycjM%3B COG0366 Glycosidases%3B E%3D1e-124 PFAM: PF00128%3B Alpha amylase%2C catalytic domain%3B E%3D0.0025 gene gene6874 http://www.ncbi.nlm.nih.gov/gene/?term=RB12343 RB12344 RB12344 RB12344 6642444 6643721 - glycosyltransferase best DB hits: BLAST: pir:G72278%3B hypothetical protein - Thermotoga maritima (strain MSB8)%3B E%3D5e-43 ddbj:BAA25653.1%3B (AB005901) deduced glucosyltransferase%3B E%3D1e-07 pir:F64500%3B probable hexosyltransferase (EC 2.4.1.-) MJ1607 -%3B E%3D7e-05 COG: TM1230%3B COG0438 Predicted glycosyltransferases%3B E%3D5e-44 PFAM: PF02843%3B Phosphoribosylglycinamide syn%3B E%3D0.45 PF00534%3B Glycosyl transferases group 1%3B E%3D0.018 gene gene6875 http://www.ncbi.nlm.nih.gov/gene/?term=RB12344 RB12347 RB12347 RB12347 6643767 6644741 - hydrolase PMID: 7826004 best DB hits: BLAST: pir:G75522%3B hydrolase%2C CbbYCbbZ/GpH/YieH family - Deinococcus%3B E%3D0.045 swissprot:Q94915%3B REG2_DROME RHYTHMICALLY EXPRESSED GENE 2 PROTEIN%3B E%3D0.14 pir:E75169%3B hypothetical protein PAB2019 - Pyrococcus abyssi (strain%3B E%3D0.15 COG: DR0414%3B COG1011 Predicted hydrolases of the HAD superfamily%3B E%3D0.004 PFAM: PF00702%3B haloacid dehalogenase-like hydrolas%3B E%3D2e-07 gene gene6876 http://www.ncbi.nlm.nih.gov/gene/?term=RB12347 RB12348 RB12348 fxsA fxsA 6644738 6645520 - inner membrane protein FxsA PMID: 10497016 PMID: 11932238 best DB hits: BLAST: pir:E82044%3B fxsA protein VC2696 [imported] - Vibrio cholerae (group%3B E%3D0.013 ddbj:BAB06881.1%3B (AP001517) BH3162~~unknown conserved protein%3B E%3D0.14 pir:C70004%3B conserved hypothetical protein ytzA - Bacillus subtilis%3B E%3D0.84 COG: VC2696%3B COG3030 Uncharacterized ACR%3B E%3D0.001 gene gene6877 http://www.ncbi.nlm.nih.gov/gene/?term=RB12348 RB1235 RB1235 RB1235 629787 631169 - NADH-dependent dehydrogenase PMID: 10192928 best DB hits: BLAST: ddbj:BAB04967.1%3B (AP001511) NADH-dependent dyhydrogenase%3B E%3D1e-11 gb:AAC23913.1%3B (AF039207) NADH-dependent dehydrogenase homolog%3B E%3D2e-10 pir:G72391%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D6e-08 COG: BH1248%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D1e-12 PFAM: PF01408%3B Oxidoreductase%2C NAD-bindi%3B E%3D9.8e-25 gene gene657 http://www.ncbi.nlm.nih.gov/gene/?term=RB1235 RB12351 RB12351 RB12351 6645317 6649282 + cytochrome C PMID: 1646017 best DB hits: BLAST: embl:CAA57910.1%3B (X82563) c-type cytochrome [Synechocystis sp.]%3B E%3D0.77 PFAM: PF00034%3B Cytochrome c%3B E%3D5.6e-05 gene gene6878 http://www.ncbi.nlm.nih.gov/gene/?term=RB12351 RB12357 RB12357 fliN fliN 6649396 6649830 - flagellar motor switch protein fliN [fragment] PMID: 2651416 best DB hits: BLAST: swissprot:P35539%3B FLIN_ERWCA FLAGELLAR MOTOR SWITCH PROTEIN FLIN%3B E%3D2e-04 swissprot:P15070%3B FLIN_ECOLI FLAGELLAR MOTOR SWITCH PROTEIN FLIN%3B E%3D5e-04 swissprot:P26419%3B FLIN_SALTY FLAGELLAR MOTOR SWITCH PROTEIN FLIN%3B E%3D5e-04 COG: TM0680a%3B COG1886 Flagellar motor switch/type III secretory pathway%3B E%3D2e-06 PFAM: PF01052%3B Surface presentation of antigens (SP%3B E%3D2.3e-07 gene gene6879 http://www.ncbi.nlm.nih.gov/gene/?term=RB12357 RB12359 RB12359 RB12359 6649876 6650223 - hypothetical protein gene gene6880 http://www.ncbi.nlm.nih.gov/gene/?term=RB12359 RB12360 RB12360 RB12360 6650263 6651828 - levanase precursor PMID: 3112519 PMID: 2117666 best DB hits: BLAST: pir:A27286%3B levanase (EC 3.2.1.65) precursor - Bacillus subtilis%3B E%3D3e-54 swissprot:P05656%3B SACC_BACSU LEVANASE PRECURSOR%3B E%3D3e-54 prf:1404371A%3B levanase [Bacillus subtilis]%3B E%3D3e-54 COG: BS_sacC%3B COG1621 Beta-fructosidases (levanase/invertase)%3B E%3D3e-55 PFAM: PF00251%3B Glycosyl hydrolases family 32%3B E%3D4.6e-10 PF02012%3B BNR repeat%3B E%3D0.81 PF00251%3B Glycosyl hydrolases family 32%3B E%3D3.1e-15 gene gene6881 http://www.ncbi.nlm.nih.gov/gene/?term=RB12360 RB12361 RB12361 RB12361 6651815 6652870 + ribokinase sugar kinase PMID: 1850730 best DB hits: BLAST: swissprot:Q55480%3B YZ37_SYNY3 HYPOTHETICAL SUGAR KINASE SLR0537%3B E%3D5e-55 gb:AAG10458.1%3B AF279106_20 (AF279106) predicted ribokinase%3B E%3D1e-42 gb:AAK00437.1%3B AC060755_7 (AC060755) adenosine kinase%3B E%3D1e-40 COG: slr0537%3B COG0524 Sugar kinases%2C ribokinase%3B E%3D4e-56 PFAM: PF00294%3B pfkB family carbohydrate kinase%3B E%3D2.7e-54 gene gene6882 http://www.ncbi.nlm.nih.gov/gene/?term=RB12361 RB12362 RB12362 RB12362 6652962 6653786 - peroxiredoxin best DB hits: BLAST: pir:S74867%3B hypothetical protein sll1159 - Synechocystis sp. (strain%3B E%3D2e-23 pir:T36936%3B hypothetical protein SCJ1.03c - Streptomyces coelicolor%3B E%3D1e-17 pir:E72332%3B thioredoxin peroxidase (EC 1.11.1.-) TM0780 [similarity]%3B E%3D1e-05 COG: sll1159%3B COG1225 Peroxiredoxins%3B E%3D2e-24 DR2242%3B COG0450 Thiol - alkyl hydroperoxide reductases%3B E%3D4e-04 bcp%3B COG1225 Peroxiredoxins%3B E%3D4e-04 gene gene6883 http://www.ncbi.nlm.nih.gov/gene/?term=RB12362 RB12363 RB12363 pcrA pcrA 6653839 6656202 - ATP-dependent DNA helicase PMID: 8419285 best DB hits: BLAST: gb:AAK05218.1%3B AE006344_7 (AE006344) ATP-dependent helicase PcrA%3B E%3D1e-131 swissprot:Q53727%3B PCRA_STAAU ATP-DEPENDENT DNA HELICASE PCRA%3B E%3D1e-127 swissprot:Q9S3Q0%3B PCRA_LEUCI ATP-DEPENDENT DNA HELICASE PCRA%3B E%3D1e-127 COG: BS_yerF%3B COG0210 Superfamily I DNA and RNA helicases%3B E%3D1e-127 PFAM: PF00580%3B UvrD/REP helicase%3B E%3D2.4e-177 gene gene6884 http://www.ncbi.nlm.nih.gov/gene/?term=RB12363 RB12367 RB12367 RB12367 6656322 6658331 - hypothetical protein best DB hits: PFAM: PF00428%3B 60s Acidic ribosomal protein%3B E%3D0.77 gene gene6885 http://www.ncbi.nlm.nih.gov/gene/?term=RB12367 RB1237 RB1237 RB1237 631142 631471 - hypothetical protein gene gene658 http://www.ncbi.nlm.nih.gov/gene/?term=RB1237 RB12371 RB12371 RB12371 6658301 6658555 + hypothetical protein gene gene6886 http://www.ncbi.nlm.nih.gov/gene/?term=RB12371 RB12372 RB12372 RB12372 6658702 6659430 + RNA polymerase ECF-type sigma factor PMID: 7889934 best DB hits: BLAST: ddbj:BAB03982.1%3B (AP001507) RNA polymerase ECF-type sigma factor%3B E%3D4e-15 swissprot:Q45585%3B SIGW_BACSU RNA POLYMERASE SIGMA FACTOR SIGW%3B E%3D3e-13 swissprot:Q06198%3B RPSH_PSEAE RNA POLYMERASE SIGMA-H FACTOR%3B E%3D1e-11 COG: BH0263%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D4e-16 PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D5.4e-10 PF00140%3B Sigma-70 factor%3B E%3D0.53 gene gene6887 http://www.ncbi.nlm.nih.gov/gene/?term=RB12372 RB12375 RB12375 RB12375 6659741 6661081 + hypothetical protein best DB hits: PFAM: PF02728%3B Copper amine oxidase%2C N3 doma%3B E%3D0.86 gene gene6888 http://www.ncbi.nlm.nih.gov/gene/?term=RB12375 RB12377 RB12377 ksgA ksgA 6661109 6661963 - dimethyladenosine transferase PMID: 3122846 best DB hits: BLAST: swissprot:P37468%3B KSGA_BACSU DIMETHYLADENOSINE TRANSFERASE%3B E%3D5e-39 ddbj:BAB03776.1%3B (AP001507) dimethyladenosine transferase%3B E%3D3e-38 gb:AAK04788.1%3B AE006302_6 (AE006302) kasugamycin%3B E%3D8e-38 COG: BS_ksgA%3B COG0030 Dimethyladenosine transferase (rRNA methylation)%3B E%3D4e-40 PFAM: PF00398%3B Ribosomal RNA adenine dimethylases%3B E%3D4.9e-50 gene gene6889 http://www.ncbi.nlm.nih.gov/gene/?term=RB12377 RB12379 RB12379 ribE ribE 6662086 6662760 - riboflavin synthase subunit alpha catalyzes the formation of riboflavin from 6%2C7-dimethyl-8-(1-D-ribityl)lumazine gene gene6890 http://www.ncbi.nlm.nih.gov/gene/?term=RB12379 RB1238 RB1238 RB1238 631540 632046 - notch-like protein PMID: 9753770 best DB hits: BLAST: gb:AAC36151.1%3B (U58977) Notch homolog Scalloped wings [Lucilia%3B E%3D0.30 gene gene659 http://www.ncbi.nlm.nih.gov/gene/?term=RB1238 RB12381 RB12381 eno eno 6662966 6664252 + enolase PMID: 8021172 best DB hits: BLAST: ddbj:BAB07275.1%3B (AP001519) enolase (2-phosphoglycerate%3B E%3D1e-144 pir:A41835%3B phosphopyruvate hydratase (EC 4.2.1.11) - Bacillus%3B E%3D1e-139 swissprot:P37869%3B ENO_BACSU ENOLASE (2-PHOSPHOGLYCERATE%3B E%3D1e-139 COG: BH3556%3B COG0148 Enolase%3B E%3D1e-145 PFAM: PF00113%3B Enol-ase%3B E%3D7e-245 gene gene6891 http://www.ncbi.nlm.nih.gov/gene/?term=RB12381 RB12382 RB12382 RB12382 6664210 6664485 - hypothetical protein gene gene6892 http://www.ncbi.nlm.nih.gov/gene/?term=RB12382 RB12383 RB12383 RB12383 6664501 6664767 - hypothetical protein gene gene6893 http://www.ncbi.nlm.nih.gov/gene/?term=RB12383 RB12385 RB12385 RB12385 6664867 6665670 + hypothetical protein gene gene6894 http://www.ncbi.nlm.nih.gov/gene/?term=RB12385 RB12386 RB12386 RB12386 6665667 6665852 + hypothetical protein gene gene6895 http://www.ncbi.nlm.nih.gov/gene/?term=RB12386 RB12387 RB12387 RB12387 6665742 6665894 - hypothetical protein gene gene6896 http://www.ncbi.nlm.nih.gov/gene/?term=RB12387 RB12388 RB12388 RB12388 6665905 6667206 - transposase best DB hits: BLAST: gb:AAD45539.1%3B U70376_1 (U70376) InsA [Streptomyces netropsis]%3B E%3D5e-33 gb:AAG60893.1%3B AF322013_12 (AF322013) ID460 [Bradyrhizobium%3B E%3D8e-33 ddbj:BAA19966.1%3B (D63923) transposase [Acetobacter pasteurianus]%3B E%3D1e-26 gene gene6897 http://www.ncbi.nlm.nih.gov/gene/?term=RB12388 RB1239 RB1239 RB1239 632033 632500 - hypothetical protein gene gene660 http://www.ncbi.nlm.nih.gov/gene/?term=RB1239 RB12390 RB12390 RB12390 6667344 6668063 - signal peptide gene gene6898 http://www.ncbi.nlm.nih.gov/gene/?term=RB12390 RB12391 RB12391 RB12391 6668003 6668407 - hypothetical protein gene gene6899 http://www.ncbi.nlm.nih.gov/gene/?term=RB12391 RB12392 RB12392 RB12392 6668436 6668543 - hypothetical protein gene gene6900 http://www.ncbi.nlm.nih.gov/gene/?term=RB12392 RB12393 RB12393 RB12393 6668555 6670561 - c-type cytochrome precursor best DB hits: BLAST: gb:AAD05531.1%3B (AF083240) c-type cytochrome precursor [Shewanella%3B E%3D0.013 gene gene6901 http://www.ncbi.nlm.nih.gov/gene/?term=RB12393 RB12395 RB12395 RB12395 6670572 6670730 - hypothetical protein gene gene6902 http://www.ncbi.nlm.nih.gov/gene/?term=RB12395 RB12396 RB12396 RB12396 6670697 6670870 - hypothetical protein gene gene6903 http://www.ncbi.nlm.nih.gov/gene/?term=RB12396 RB12398 RB12398 RB12398 6670928 6672013 - hypothetical protein gene gene6904 http://www.ncbi.nlm.nih.gov/gene/?term=RB12398 RB1240 RB1240 RB1240 632546 634060 - secreted glycosyl hydrolase best DB hits: BLAST: embl:CAB94634.1%3B (AL359215) secreted glycosyl hydrolase.%3B E%3D0.005 pir:D83161%3B hypothetical protein PA3885 [imported] - Pseudomonas%3B E%3D0.010 pir:T34929%3B hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces%3B E%3D0.37 COG: PA3885%3B COG2365 Protein tyrosine/serine phosphatase%3B E%3D0.001 PFAM: PF00239%3B Resolvase class of site-specific re%3B E%3D0.14 gene gene661 http://www.ncbi.nlm.nih.gov/gene/?term=RB1240 RB12400 RB12400 RB12400 6672196 6673551 - hypothetical protein best DB hits: BLAST: pir:G70414%3B conserved hypothetical protein aq_1327 - Aquifex%3B E%3D1e-08 pir:G72297%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D5e-08 pir:T34718%3B probable integral membrane protein - Streptomyces%3B E%3D9e-07 COG: aq_1327%3B COG0705 Uncharacterized membrane protein (homolog of%3B E%3D1e-09 PFAM: PF01694%3B Rhomboid family%3B E%3D3.1e-12 gene gene6905 http://www.ncbi.nlm.nih.gov/gene/?term=RB12400 RB12403 RB12403 RB12403 6673562 6673741 - hypothetical protein gene gene6906 http://www.ncbi.nlm.nih.gov/gene/?term=RB12403 RB12404 RB12404 RB12404 6673728 6674021 - hypothetical protein gene gene6907 http://www.ncbi.nlm.nih.gov/gene/?term=RB12404 RB12406 RB12406 nupG nupG 6674037 6675587 + nucleoside-transport system protein PMID: 3311747 best DB hits: BLAST: gb:AAG57155.1%3B AE005436_2 (AE005436) nucleoside permease%3B E%3D5e-53 swissprot:P76417%3B YEGT_ECOLI NUCLEOSIDE TRANSPORTER YEGT%3B E%3D8e-53 pir:C65082%3B nucleoside-transporting protein nupG - Escherichia coli%3B E%3D6e-30 COG: yegT%3B COG0477 Permeases of the major facilitator superfamily%3B E%3D7e-54 gene gene6908 http://www.ncbi.nlm.nih.gov/gene/?term=RB12406 RB12407 RB12407 RB12407 6675588 6675797 - hypothetical protein gene gene6909 http://www.ncbi.nlm.nih.gov/gene/?term=RB12407 RB12408 RB12408 RB12408 6675635 6675814 + hypothetical protein gene gene6910 http://www.ncbi.nlm.nih.gov/gene/?term=RB12408 RB12409 RB12409 RB12409 6675757 6678855 + hypothetical protein PMID: 10216867 best DB hits: BLAST: gb:AAD30859.1%3B AF116251_2 (AF116251) BatB [Bacteroides fragilis]%3B E%3D0.007 gene gene6911 http://www.ncbi.nlm.nih.gov/gene/?term=RB12409 RB12414 RB12414 RB12414 6678852 6679049 + signal peptide gene gene6912 http://www.ncbi.nlm.nih.gov/gene/?term=RB12414 RB12415 RB12415 RB12415 6679150 6679572 - hypothetical protein PMID: 10484179 best DB hits: BLAST: gb:AAG18715.1%3B (AE004976) Vng0080h [Halobacterium sp. NRC-1]%3B E%3D2e-04 ddbj:BAB07426.1%3B (AP001519) acetobutylicum phosphotransbutyrylase%3B E%3D0.005 gene gene6913 http://www.ncbi.nlm.nih.gov/gene/?term=RB12415 RB12416 RB12416 RB12416 6679578 6680456 + signal peptide gene gene6914 http://www.ncbi.nlm.nih.gov/gene/?term=RB12416 RB12419 RB12419 RB12419 6680453 6680932 + cytosine deaminase PMID: 1567863 best DB hits: BLAST: pir:S20974%3B hypothetical protein 178 - Escherichia coli%3B E%3D4e-34 swissprot:P30134%3B YFHC_ECOLI HYPOTHETICAL 20.0 KD PROTEIN IN%3B E%3D4e-34 gb:AAG57673.1%3B AE005486_4 (AE005486) deaminase%3B E%3D4e-34 COG: yfhC%3B COG0590 Cytosine/adenosine deaminases%3B E%3D4e-35 PFAM: PF00383%3B Cytidine and deoxycytidylate de%3B E%3D1.7e-37 gene gene6915 http://www.ncbi.nlm.nih.gov/gene/?term=RB12419 RB12421 RB12421 RB12421 6680963 6682504 + adenylate cyclase PMID: 2065652 PMID: 1905979 best DB hits: BLAST: gb:AAF82144.1%3B AC034256_8 (AC034256) Contains similarity to F-box%3B E%3D3e-15 gb:AAG17034.1%3B AF187980_1 (AF187980) Partner of Paired [Drosophila%3B E%3D8e-09 embl:CAB95333.1%3B (AL359782) possible adenylate cyclase%3B E%3D2e-06 gene gene6916 http://www.ncbi.nlm.nih.gov/gene/?term=RB12421 RB12422 RB12422 RB12422 6682504 6683076 + hypothetical protein PMID: 12004073 gene gene6917 http://www.ncbi.nlm.nih.gov/gene/?term=RB12422 RB12424 RB12424 RB12424 6683073 6684026 + potassium channel PMID: 1550672 best DB hits: BLAST: pir:A82682%3B ion transporter XF1426 [imported] - Xylella fastidiosa%3B E%3D1e-48 pir:E75470%3B probable ion transporter - Deinococcus radiodurans%3B E%3D5e-42 pir:B83459%3B probable potassium channel PA1496 [imported] -%3B E%3D1e-36 COG: XF1426%3B COG1226 Kef-type K+ transport systems%2C predicted NAD-binding%3B E%3D1e-49 APE0955%3B COG1226 Kef-type K+ transport systems%2C predicted%3B E%3D7e-09 BH3340%3B COG1226 Kef-type K+ transport systems%2C predicted NAD-binding%3B E%3D4e-05 PFAM: PF01145%3B SPFH domain / Band 7 family%3B E%3D0.42 PF00520%3B Ion transport protein%3B E%3D5.1e-21 gene gene6918 http://www.ncbi.nlm.nih.gov/gene/?term=RB12424 RB12426 RB12426 RB12426 6684059 6684472 + hypothetical protein gene gene6919 http://www.ncbi.nlm.nih.gov/gene/?term=RB12426 RB12427 RB12427 RB12427 6684475 6684645 - hypothetical protein gene gene6920 http://www.ncbi.nlm.nih.gov/gene/?term=RB12427 RB12428 RB12428 RB12428 6684618 6685586 - hypothetical protein PMID: 9537320 best DB hits: BLAST: pir:B70374%3B conserved hypothetical protein aq_854 - Aquifex aeolicus%3B E%3D0.20 pir:E69078%3B conserved hypothetical protein MTH1585 -%3B E%3D0.34 ddbj:BAB05388.1%3B (AP001512) BH1669~~unknown conserved protein%3B E%3D0.58 PFAM: PF00515%3B TPR Domain%3B E%3D0.15 gene gene6921 http://www.ncbi.nlm.nih.gov/gene/?term=RB12428 RB12429 RB12429 RB12429 6685569 6686255 + hypothetical protein gene gene6922 http://www.ncbi.nlm.nih.gov/gene/?term=RB12429 RB12431 RB12431 RB12431 6686283 6687857 - sulfatase PMID: [EscherichiacoliO157:H7] best DB hits: BLAST: gb:AAF32278.1%3B (AF211192) SULF1 [Drosophila melanogaster]%3B E%3D7e-13 gb:AAG58881.1%3B AE005599_13 (AE005599) sulfatase%3B E%3D1e-12 gb:AAF55296.1%3B (AE003712) Sulf1 gene product [Drosophila%3B E%3D8e-12 COG: PA0031%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D3e-12 PFAM: PF00884%3B Sulfatase%3B E%3D5.6e-14 gene gene6923 http://www.ncbi.nlm.nih.gov/gene/?term=RB12431 RB12432 RB12432 RB12432 6687862 6689526 - arylsulfatase PMID: 7910580 best DB hits: BLAST: swissprot:P50428%3B ARSA_MOUSE ARYLSULFATASE A PRECURSOR (ASA)%3B E%3D5e-36 gb:AAC27821.1%3B (AF013158) arylsulfatase [Heliocidaris%3B E%3D7e-36 embl:CAA34667.1%3B (X16679) arylsulfatase [Hemicentrotus%3B E%3D1e-35 COG: aslA%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D8e-28 PAB0793%3B COG2194 Predicted membrane-associated%2C metal-dependent%3B E%3D0.001 VNG1337C%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D0.004 PFAM: PF00884%3B Sulfatase%3B E%3D2.2e-39 gene gene6924 http://www.ncbi.nlm.nih.gov/gene/?term=RB12432 RB12434 RB12434 ogt ogt 6689629 6691671 - O-GlcNAc transferase PMID: 9083067 best DB hits: BLAST: gb:AAF55179.1%3B (AE003708) CG5038 gene product [Drosophila%3B E%3D5e-28 swissprot:P56558%3B OGT1_RAT UDP-N-ACETYLGLUCOSAMINE--PEPTIDE%3B E%3D3e-27 gb:AAD38597.1%3B AF145622_1 (AF145622) BcDNA.GH04245 [Drosophila%3B E%3D2e-25 COG: MTH83%3B COG0457 TPR-repeat-containing proteins%3B E%3D2e-20 PFAM: PF00515%3B TPR Domain%3B E%3D6.4e-07 gene gene6925 http://www.ncbi.nlm.nih.gov/gene/?term=RB12434 RB12436 RB12436 mntB mntB 6691668 6693116 - manganese ABC transporter permease PMID: 7743991 best DB hits: BLAST: pir:E69992%3B conserved hypothetical protein ytgD - Bacillus subtilis%3B E%3D3e-41 ddbj:BAB05109.1%3B (AP001511) BH1390~~unknown conserved protein in%3B E%3D2e-32 gb:AAD56938.1%3B AF180520_3 (AF180520) integral membrane protein%3B E%3D3e-28 COG: BS_ytgD%3B COG1108 ABC-type Mn2+/Zn2+ transport systems%2C permease%3B E%3D3e-42 Rv2788%3B COG1321 Mn-dependent transcriptional regulator%3B E%3D3e-10 BH1395%3B COG1108 ABC-type Mn2+/Zn2+ transport systems%2C permease%3B E%3D5e-10 PFAM: PF00950%3B ABC 3 transport family%3B E%3D1.1e-17 PF02742%3B Iron dependent repressor%2C metal%3B E%3D2.9e-10 gene gene6926 http://www.ncbi.nlm.nih.gov/gene/?term=RB12436 RB12437 RB12437 mntB mntB 6693113 6694447 - manganese ABC transporter permease PMID: 7743991 best DB hits: BLAST: pir:D69992%3B ABC transporter (membrane protein) homolog ytgC -%3B E%3D8e-45 pir:B71357%3B probable ABC transporter%2C permease (troC) -%3B E%3D5e-22 pir:A72089%3B integral membrane protein - Chlamydophila pneumoniae%3B E%3D4e-21 COG: BS_ytgC%3B COG1108 ABC-type Mn2+/Zn2+ transport systems%2C permease%3B E%3D8e-46 CPn0347_2%3B COG1321 Mn-dependent transcriptional regulator%3B E%3D2e-07 TM0125%3B COG1108 ABC-type Mn2+/Zn2+ transport systems%2C permease%3B E%3D3e-07 PFAM: PF00950%3B ABC 3 transport family%3B E%3D1.6e-72 PF02742%3B Iron dependent repressor%2C metal%3B E%3D1.6e-07 gene gene6927 http://www.ncbi.nlm.nih.gov/gene/?term=RB12437 RB12438 RB12438 mntA mntA 6694447 6695289 - manganese transport system ATP-binding protein PMID: 7743991 best DB hits: BLAST: pir:C69992%3B ABC transporter (ATP-binding protein) homolog ytgB -%3B E%3D3e-73 pir:A71357%3B probable ABC transporter ATP-binding protein (troB) -%3B E%3D1e-70 pir:T45470%3B ATP-binding ABC transport protein [imported] -%3B E%3D9e-58 COG: BS_ytgB%3B COG1121 ABC-type Mn/Zn transport systems%2C ATPase component%3B E%3D3e-74 BS_yfmF%3B COG1120 ABC-type cobalamin/Fe3+-siderophores transport%3B E%3D8e-24 PH1653%3B COG1121 ABC-type Mn/Zn transport systems%2C ATPase component%3B E%3D5e-23 PFAM: PF02463%3B SMC domain N terminal domain%3B E%3D0.17 PF00005%3B ABC transporter%3B E%3D7.9e-50 gene gene6928 http://www.ncbi.nlm.nih.gov/gene/?term=RB12438 RB12439 RB12439 RB12439 6695437 6695571 - hypothetical protein gene gene6929 http://www.ncbi.nlm.nih.gov/gene/?term=RB12439 RB12440 RB12440 mtsA mtsA 6695599 6696699 - manganese ABC transporter substrate binding protein PMID: 7743991 best DB hits: BLAST: pir:B69992%3B ABC transporter (membrane protein) homolog ytgA -%3B E%3D7e-66 pdb:1TOA%3B A Chain A%2C Periplasmic Zinc Binding Protein Troa From%3B E%3D3e-50 gb:AAA92353.1%3B (U16363) Tromp1 [Treponema pallidum]%3B E%3D3e-50 COG: BS_ytgA%3B COG0803 ABC-type Mn/Zn transport system%2C periplasmic%3B E%3D7e-67 PFAM: PF01297%3B Periplasmic solute binding prot%3B E%3D3.6e-103 gene gene6930 http://www.ncbi.nlm.nih.gov/gene/?term=RB12440 RB12441 RB12441 nudF nudF 6696666 6697445 - ADP-ribose pyrophosphatase PMID: 9694840 best DB hits: BLAST: pir:G69041%3B mutator MutT protein - Methanobacterium%3B E%3D3e-07 swissprot:Q58549%3B ADPP_METJA ADP-RIBOSE PYROPHOSPHATASE%3B E%3D9e-07 embl:CAC12694.1%3B (AJ272115) hypothetical protein [Thauera%3B E%3D2e-06 COG: MTH1315%3B COG1051 ADP-ribose pyrophosphatase%3B E%3D3e-08 BH1893%3B COG0494 NTP pyrophosphohydrolases including oxidative damage%3B E%3D3e-07 VC0331%3B COG2816 NTP pyrophosphohydrolases containing a Zn-finger%2C%3B E%3D3e-06 PFAM: PF01165%3B Ribosomal protein S21%3B E%3D0.52 PF00293%3B MutT-like domain%3B E%3D1e-25 gene gene6931 http://www.ncbi.nlm.nih.gov/gene/?term=RB12441 RB12442 RB12442 RB12442 6697442 6698977 - hypothetical protein gene gene6932 http://www.ncbi.nlm.nih.gov/gene/?term=RB12442 RB12444 RB12444 RB12444 6698983 6699558 + hypothetical protein gene gene6933 http://www.ncbi.nlm.nih.gov/gene/?term=RB12444 RB12445 RB12445 tmk tmk 6699486 6700223 + thymidylate kinase PMID: 2017365 best DB hits: BLAST: pir:T36663%3B protein kinase%2C transmembrane - Streptomyces coelicolor%3B E%3D8e-28 pir:B81173%3B thymidylate kinase NMB0670 [imported] - Neisseria%3B E%3D1e-27 pir:H81932%3B probable dTMP kinase (EC 2.7.4.9) NMA0869 [imported] -%3B E%3D3e-27 COG: NMB0670%3B COG0125 Thymidylate kinase%3B E%3D1e-28 PFAM: PF02223%3B Thymidylate kinase%3B E%3D1.3e-62 gene gene6934 http://www.ncbi.nlm.nih.gov/gene/?term=RB12445 RB12447 RB12447 RB12447 6700272 6700583 + hypothetical protein gene gene6935 http://www.ncbi.nlm.nih.gov/gene/?term=RB12447 RB12449 RB12449 RB12449 6700689 6701000 - signal peptide gene gene6936 http://www.ncbi.nlm.nih.gov/gene/?term=RB12449 RB12450 RB12450 RB12450 6701097 6701561 - signal peptide gene gene6937 http://www.ncbi.nlm.nih.gov/gene/?term=RB12450 RB12451 RB12451 RB12451 6701635 6702552 - hypothetical protein gene gene6938 http://www.ncbi.nlm.nih.gov/gene/?term=RB12451 RB12452 RB12452 RB12452 6702485 6702946 - hypothetical protein gene gene6939 http://www.ncbi.nlm.nih.gov/gene/?term=RB12452 RB12454 RB12454 RB12454 6703048 6703647 - hypothetical protein gene gene6940 http://www.ncbi.nlm.nih.gov/gene/?term=RB12454 RB12455 RB12455 RB12455 6703744 6704238 - hypothetical protein gene gene6941 http://www.ncbi.nlm.nih.gov/gene/?term=RB12455 RB12456 RB12456 RB12456 6704266 6704664 - cyclophilin PMID: 8132648 best DB hits: BLAST: pir:B53522%3B 20k cyclophilin - Toxoplasma gondii (fragment) -----%3B E%3D0.056 gene gene6942 http://www.ncbi.nlm.nih.gov/gene/?term=RB12456 RB12458 RB12458 RB12458 6704719 6704976 + hypothetical protein gene gene6943 http://www.ncbi.nlm.nih.gov/gene/?term=RB12458 RB12459 RB12459 RB12459 6705119 6706069 - mannitol operon repressor PMID: 8300537 best DB hits: BLAST: pir:D82385%3B mannitol operon repressor VCA1047 [imported] - Vibrio%3B E%3D6e-04 gb:AAD45387.1%3B AF166095_3 (AF166095) mtl operon repressor%3B E%3D0.12 swissprot:P36563%3B MTLR_ECOLI MANNITOL OPERON REPRESSOR (MANNITOL%3B E%3D0.28 gene gene6944 http://www.ncbi.nlm.nih.gov/gene/?term=RB12459 RB1246 RB1246 RB1246 634145 634567 - hypothetical protein gene gene662 http://www.ncbi.nlm.nih.gov/gene/?term=RB1246 RB12460 RB12460 RB12460 6706103 6707170 - hypothetical protein gene gene6945 http://www.ncbi.nlm.nih.gov/gene/?term=RB12460 RB12461 RB12461 RB12461 6707206 6708942 - signal peptide best DB hits: PFAM: PF02205%3B WH2 motif%3B E%3D0.86 gene gene6946 http://www.ncbi.nlm.nih.gov/gene/?term=RB12461 RB12464 RB12464 RB12464 6709081 6710172 - potassium channel protein PMID: 10952301 best DB hits: BLAST: pir:C82490%3B probable potassium channel protein VCA0194 [imported] -%3B E%3D0.039 COG: VCA0194%3B COG1226 Kef-type K+ transport systems%2C predicted%3B E%3D0.004 gene gene6947 http://www.ncbi.nlm.nih.gov/gene/?term=RB12464 RB12468 RB12468 RB12468 6710136 6712169 - signal peptide best DB hits: PFAM: PF00520%3B Ion transport protein%3B E%3D1.8e-05 PF01578%3B Cytochrome C assembly protein%3B E%3D0.81 gene gene6948 http://www.ncbi.nlm.nih.gov/gene/?term=RB12468 RB12471 RB12471 RB12471 6712185 6712442 - hypothetical protein gene gene6949 http://www.ncbi.nlm.nih.gov/gene/?term=RB12471 RB12473 RB12473 RB12473 6712524 6712706 + hypothetical protein gene gene6950 http://www.ncbi.nlm.nih.gov/gene/?term=RB12473 RB12475 RB12475 RB12475 6712706 6715966 + hypothetical protein gene gene6951 http://www.ncbi.nlm.nih.gov/gene/?term=RB12475 RB12477 RB12477 RB12477 6716008 6717072 + hypothetical protein gene gene6952 http://www.ncbi.nlm.nih.gov/gene/?term=RB12477 RB12479 RB12479 RB12479 6716985 6717557 - hypothetical protein gene gene6953 http://www.ncbi.nlm.nih.gov/gene/?term=RB12479 RB1248 RB1248 RB1248 634500 635303 + ABC-type multidrug transport system%2C ATPase component PMID: 7476193 best DB hits: BLAST: pir:S76626%3B ABC-type transport protein sll0489 - Synechocystis sp.%3B E%3D2e-52 pir:A83142%3B probable ATP-binding component of ABC transporter PA4037%3B E%3D6e-50 pir:T44443%3B gliding motility protein [imported] - Flavobacterium%3B E%3D1e-49 COG: sll0489%3B COG1131 ABC-type multidrug transport system%2C ATPase%3B E%3D2e-53 ybhF%3B COG1131 ABC-type multidrug transport system%2C ATPase component%3B E%3D1e-33 VNG1893G%3B COG1131 ABC-type multidrug transport system%2C ATPase%3B E%3D2e-33 PFAM: PF00005%3B ABC transporter%3B E%3D9.2e-47 gene gene663 http://www.ncbi.nlm.nih.gov/gene/?term=RB1248 RB12480 RB12480 ribA ribA 6717554 6718774 - riboflavin biosynthesis protein RibA PMID: 9297088 best DB hits: BLAST: ddbj:BAB05275.1%3B (AP001512) GTP cyclohydrolase II 3%2C%3B E%3D1e-106 swissprot:P51695%3B GCH2_BACAM RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBA%3B E%3D1e-103 swissprot:P17620%3B GCH2_BACSU RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBA%3B E%3D1e-103 COG: BH1556_2%3B COG0807 GTP cyclohydrolase II%3B E%3D7e-51 BH1556_1%3B COG0108 3%2C4-dihydroxy-2-butanone 4-phosphate synthase%3B E%3D2e-48 ribA%3B COG0807 GTP cyclohydrolase II%3B E%3D2e-48 PFAM: PF00926%3B 3%2C4-dihydroxy-2-butanone 4-ph%3B E%3D5.7e-83 PF00925%3B GTP cyclohydrolase II%3B E%3D2.5e-89 gene gene6954 http://www.ncbi.nlm.nih.gov/gene/?term=RB12480 RB12482 RB12482 RB12482 6718870 6720036 + lipase/esterase PMID: 1907455 best DB hits: BLAST: pir:B75555%3B probable lipaseesterase - Deinococcus radiodurans%3B E%3D1e-19 pdb:1EVQ%3B A Chain A%2C The Crystal Structure Of The Thermophilic%3B E%3D6e-12 pir:H70731%3B probable esterase - Mycobacterium tuberculosis (strain%3B E%3D5e-11 COG: DR0133%3B COG0657 Acetyl esterase%3B E%3D1e-20 XF2260%3B COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases%3B E%3D1e-04 aes%3B COG0657 Acetyl esterase%3B E%3D5e-04 gene gene6955 http://www.ncbi.nlm.nih.gov/gene/?term=RB12482 RB12484 RB12484 RB12484 6720078 6721052 - hypothetical protein best DB hits: PFAM: PF00892%3B Integral membrane protein DUF6%3B E%3D0.67 gene gene6956 http://www.ncbi.nlm.nih.gov/gene/?term=RB12484 RB12485 RB12485 RB12485 6720957 6721193 + hypothetical protein gene gene6957 http://www.ncbi.nlm.nih.gov/gene/?term=RB12485 RB12486 RB12486 RB12486 6721197 6722753 + serine/threonine protein kinase PMID: 7768349 best DB hits: BLAST: pir:H69878%3B probable protein kinase (EC 2.7.1.-) yloP - Bacillus%3B E%3D4e-44 pir:T36717%3B probable serinethreonine protein kinase - Streptomyces%3B E%3D4e-40 swissprot:P71584%3B PKNB_MYCTU SERINETHREONINE-PROTEIN%3B E%3D2e-39 COG: BS_yloP_1%3B COG0515 Serine/threonine protein kinases%3B E%3D4e-45 PFAM: PF00069%3B Protein kinase domain%3B E%3D1.7e-55 gene gene6958 http://www.ncbi.nlm.nih.gov/gene/?term=RB12486 RB12487 RB12487 RB12487 6722743 6724590 - hypothetical protein gene gene6959 http://www.ncbi.nlm.nih.gov/gene/?term=RB12487 RB12489 RB12489 RB12489 6724867 6725928 + signal peptide best DB hits: PFAM: PF02537%3B CrcB-like protein%3B E%3D0.22 gene gene6960 http://www.ncbi.nlm.nih.gov/gene/?term=RB12489 RB12492 RB12492 RB12492 6725922 6726260 - hypothetical protein gene gene6961 http://www.ncbi.nlm.nih.gov/gene/?term=RB12492 RB12495 RB12495 fliK fliK 6726361 6728091 - flagellar hook-length control protein FliK PMID: 1828465 best DB hits: BLAST: ddbj:BAB06171.1%3B (AP001515) BH2452~~unknown conserved protein%3B E%3D0.067 pir:T14405%3B small GTP-binding protein rab-1 - turnip ----- gb:%3B E%3D0.076 swissprot:P23451%3B FLIK_BACSU PROBABLE FLAGELLAR HOOK-LENGTH%3B E%3D0.082 COG: BH2452%3B COG3144 Flagellar hook-length control protein%3B E%3D0.006 gene gene6962 http://www.ncbi.nlm.nih.gov/gene/?term=RB12495 RB12497 RB12497 RB12497 6728092 6728742 - hypothetical protein best DB hits: PFAM: PF02895%3B Signal transducing histidine kin%3B E%3D0.61 gene gene6963 http://www.ncbi.nlm.nih.gov/gene/?term=RB12497 RB12499 RB12499 fliJ fliJ 6728739 6729221 - flagellar FliJ protein PMID: 1904439 best DB hits: BLAST: swissprot:P20487%3B FLIJ_BACSU FLAGELLAR FLIJ PROTEIN (CHEMOTAXIS%3B E%3D0.012 COG: BS_fliJ%3B COG2882 Flagellar biosynthesis chaperone%3B E%3D0.001 gene gene6964 http://www.ncbi.nlm.nih.gov/gene/?term=RB12499 RB125 RB125 RB125 53678 54571 - hypothetical protein gene gene68 http://www.ncbi.nlm.nih.gov/gene/?term=RB125 RB1250 RB1250 RB1250 635417 638389 + ABC transporter permease PMID: 10984043 best DB hits: BLAST: pir:B83188%3B probable permease of ABC transporter PA3671 [imported] -%3B E%3D7e-21 pir:B83142%3B hypothetical protein PA4038 [imported] - Pseudomonas%3B E%3D3e-17 pir:H70193%3B membrane spanning protein homolog - Lyme disease%3B E%3D1e-12 COG: PA3671%3B COG1277 Permease component of an ABC-transporter%3B E%3D6e-22 PA4039%3B COG3225 Uncharacterized BCR%3B E%3D1e-04 PH1531%3B COG1668 ATP-dependent Na+ efflux pump membrane component%3B E%3D0.002 gene gene664 http://www.ncbi.nlm.nih.gov/gene/?term=RB1250 RB12500 RB12500 fliI fliI 6729263 6730666 - flagellum-specific ATP synthase PMID: 1828465 best DB hits: BLAST: pir:D72404%3B flagellum-specific ATP synthase - Thermotoga maritima%3B E%3D1e-108 ddbj:BAB06174.1%3B (AP001515) flagellar-specific ATP synthase%3B E%3D1e-106 swissprot:P23445%3B FLII_BACSU FLAGELLUM-SPECIFIC ATP SYNTHASE%3B E%3D1e-103 COG: TM0218%3B COG1157 Flagellar biosynthesis/type III secretory pathway%3B E%3D1e-109 atpD%3B COG0055 F0F1-type ATP synthase beta subunit%3B E%3D2e-37 PFAM: PF00005%3B ABC transporter%3B E%3D0.024 PF00006%3B ATP synthase alpha/beta family%2C%3B E%3D4e-131 gene gene6965 http://www.ncbi.nlm.nih.gov/gene/?term=RB12500 RB12501 RB12501 RB12501 6730663 6731535 - hypothetical protein best DB hits: PFAM: PF02361%3B Cobalt transport protein%3B E%3D0.17 gene gene6966 http://www.ncbi.nlm.nih.gov/gene/?term=RB12501 RB12502 RB12502 fliG fliG 6731537 6732844 - flagellar motor switch protein FliG PMID: 10440379 best DB hits: BLAST: swissprot:Q9WY63%3B FLIG_THEMA FLAGELLAR MOTOR SWITCH PROTEIN FLIG%3B E%3D7e-08 pir:G71328%3B probable flagellar motor switch protein (fliG-2) -%3B E%3D6e-07 gb:AAF35852.1%3B AF220006_1 (AF220006) lateral flagellar motor%3B E%3D2e-06 COG: TM0220%3B COG1536 Flagellar motor switch protein%3B E%3D7e-09 gene gene6967 http://www.ncbi.nlm.nih.gov/gene/?term=RB12502 RB12504 RB12504 RB12504 6732841 6733089 - hypothetical protein gene gene6968 http://www.ncbi.nlm.nih.gov/gene/?term=RB12504 RB12506 RB12506 RB12506 6733068 6733505 + anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) PMID: 9266669 best DB hits: BLAST: ddbj:BAB05255.1%3B (AP001512) anti-sigma F factor antagonist (stage%3B E%3D0.003 pir:S75220%3B hypothetical protein slr1912 - Synechocystis sp. (strain%3B E%3D0.024 COG: BH1536%3B COG1366 Anti-anti-sigma regulatory factor (antagonist of%3B E%3D3e-04 PFAM: PF01740%3B STAS domain%3B E%3D4.9e-06 gene gene6969 http://www.ncbi.nlm.nih.gov/gene/?term=RB12506 RB12509 RB12509 RB12509 6733502 6734209 + two-component sensor histidine kinase PMID: 1528845 best DB hits: BLAST: pir:T30898%3B receptor-like histidine kinase - Rhodococcus erythropolis%3B E%3D6e-08 pir:T28694%3B hypothetical protein - Streptomyces coelicolor -----%3B E%3D1e-07 pir:T28655%3B receptor-like histidine kinase BpdS - Rhodococcus sp%3B E%3D2e-07 COG: narQ%3B COG0642 Sensory transduction histidine kinases%3B E%3D2e-08 PFAM: PF02518%3B Histidine kinase-%2C DNA gyrase B-%2C p%3B E%3D1.9e-05 gene gene6970 http://www.ncbi.nlm.nih.gov/gene/?term=RB12509 RB12510 RB12510 aroG aroG 6734262 6735314 - phospho-2-dehydro-3-deoxyheptonate aldolase catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate%2C phenylalanine sensitive gene gene6971 http://www.ncbi.nlm.nih.gov/gene/?term=RB12510 RB12511 RB12511 RB12511 6735460 6736584 - hypothetical protein PMID: 11016950 best DB hits: BLAST: gb:AAG18715.1%3B (AE004976) Vng0080h [Halobacterium sp. NRC-1]%3B E%3D0.018 gene gene6972 http://www.ncbi.nlm.nih.gov/gene/?term=RB12511 RB12513 RB12513 flgE flgE 6736607 6739042 - flagellar hook protein FlgE PMID: 10368149 best DB hits: BLAST: gb:AAD24206.1%3B AF049342_4 (AF049342) flagellar hook protein FlgE%3B E%3D8e-22 gb:AAA61738.1%3B (U19712) flagellar hook polypeptide [Borrelia%3B E%3D1e-21 gb:AAA91361.1%3B (U12870) flagellar distal rod protein [Borrelia%3B E%3D3e-21 COG: BB0283%3B COG1749 Flagellar basal body and hook proteins%3B E%3D5e-22 PFAM: PF00460%3B Flagella basal body rod protein%3B E%3D3.7e-10 gene gene6973 http://www.ncbi.nlm.nih.gov/gene/?term=RB12513 RB12514 RB12514 flgD flgD 6739123 6739617 - basal-body rod modification protein FlgD PMID: 8049271 best DB hits: BLAST: gb:AAG25963.1%3B AF300968_5 (AF300968) FlgD [Sinorhizobium meliloti]%3B E%3D2e-05 gb:AAF14369.1%3B AF133240_3 (AF133240) flagellar scaffolding protein%3B E%3D3e-05 gb:AAA97475.1%3B (U51896) LfgD [Vibrio parahaemolyticus]%3B E%3D4e-05 COG: PA1079%3B COG1843 Flagellar hook capping protein%3B E%3D8e-06 gene gene6974 http://www.ncbi.nlm.nih.gov/gene/?term=RB12514 RB12516 RB12516 RB12516 6739496 6741055 + hypothetical protein gene gene6975 http://www.ncbi.nlm.nih.gov/gene/?term=RB12516 RB12518 RB12518 RB12518 6741089 6743266 + hypothetical protein gene gene6976 http://www.ncbi.nlm.nih.gov/gene/?term=RB12518 RB12519 RB12519 RB12519 6743233 6744330 + signal peptide gene gene6977 http://www.ncbi.nlm.nih.gov/gene/?term=RB12519 RB1252 RB1252 RB1252 638429 640426 + hypothetical protein best DB hits: BLAST: pir:H83187%3B hypothetical protein PA3669 [imported] - Pseudomonas%3B E%3D0.14 gene gene665 http://www.ncbi.nlm.nih.gov/gene/?term=RB1252 RB12521 RB12521 RB12521 6744279 6746459 + hypothetical protein best DB hits: PFAM: PF02163%3B Sterol-regulatory element bindi%3B E%3D0.78 PF00364%3B Biotin-requiring enzyme%3B E%3D0.21 PF00358%3B phosphoenolpyruvate-dependent s%3B E%3D0.42 gene gene6978 http://www.ncbi.nlm.nih.gov/gene/?term=RB12521 RB12524 RB12524 RB12524 6746493 6747125 + peptide chain release factor best DB hits: BLAST: gb:AAG51290.1%3B AC027035_13 (AC027035) unknown protein [Arabidopsis%3B E%3D3e-08 gb:AAG51209.1%3B AC051630_6 (AC051630) peptide chain release factor%2C%3B E%3D1e-07 gb:AAF53262.1%3B (AE003639) CG5705 gene product [Drosophila%3B E%3D0.20 gene gene6979 http://www.ncbi.nlm.nih.gov/gene/?term=RB12524 RB12526 RB12526 RB12526 6747132 6747902 + hypothetical protein PMID: 10382966 best DB hits: BLAST: pir:G70414%3B conserved hypothetical protein aq_1327 - Aquifex%3B E%3D1e-30 pir:G72297%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D1e-28 pir:T34718%3B probable integral membrane protein - Streptomyces%3B E%3D2e-26 COG: aq_1327%3B COG0705 Uncharacterized membrane protein (homolog of%3B E%3D1e-31 PFAM: PF01694%3B Rhomboid family%3B E%3D3e-30 gene gene6980 http://www.ncbi.nlm.nih.gov/gene/?term=RB12526 RB12528 RB12528 RB12528 6747917 6748945 + hypothetical protein gene gene6981 http://www.ncbi.nlm.nih.gov/gene/?term=RB12528 RB12532 RB12532 RB12532 6749031 6750248 + phosphatase PMID: 9634230 best DB hits: BLAST: swissprot:Q50644%3B YP77_MYCTU HYPOTHETICAL 57.3 KDA PROTEIN RV2577%3B E%3D9e-08 gb:AAF47971.1%3B (AE003484) CG1637 gene product [alt 1] [Drosophila%3B E%3D9e-06 gb:AAF47969.1%3B (AE003484) CG1637 gene product [alt 3] [Drosophila%3B E%3D6e-04 PFAM: PF02908%3B Purple acid phosphatase%2C N-ter%3B E%3D0.013 PF02227%3B Purple acid phosphatase%3B E%3D8.7e-08 gene gene6982 http://www.ncbi.nlm.nih.gov/gene/?term=RB12532 RB12533 RB12533 RB12533 6750299 6751594 + signal peptide gene gene6983 http://www.ncbi.nlm.nih.gov/gene/?term=RB12533 RB12534 RB12534 RB12534 6751597 6754128 + signal peptide gene gene6984 http://www.ncbi.nlm.nih.gov/gene/?term=RB12534 RB12537 RB12537 RB12537 6754144 6754302 + hypothetical protein gene gene6985 http://www.ncbi.nlm.nih.gov/gene/?term=RB12537 RB12538 RB12538 RB12538 6754353 6756758 + signal peptide gene gene6986 http://www.ncbi.nlm.nih.gov/gene/?term=RB12538 RB1254 RB1254 RB1254 640610 640747 + hypothetical protein gene gene666 http://www.ncbi.nlm.nih.gov/gene/?term=RB1254 RB12541 RB12541 RB12541 6756939 6758414 + thioredoxin best DB hits: BLAST: swissprot:Q10801%3B DIPZ_MYCTU DIPZ PROTEIN ----- pir: E70923%3B E%3D3e-04 pir:E69891%3B cytochrome c biogenesis protein CycX homolog homolog%3B E%3D3e-04 pir:F75549%3B cytochrome c biogenesis protein CycX homolog DR0189%3B E%3D8e-04 COG: BS_yneN%3B COG0526 Thiol-disulfide isomerase and thioredoxins%3B E%3D3e-05 PFAM: PF00085%3B Thioredoxin%3B E%3D0.13 gene gene6987 http://www.ncbi.nlm.nih.gov/gene/?term=RB12541 RB12543 RB12543 RB12543 6758519 6759514 - hypothetical protein gene gene6988 http://www.ncbi.nlm.nih.gov/gene/?term=RB12543 RB12544 RB12544 RB12544 6759511 6761082 - hypothetical protein best DB hits: BLAST: gb:AAB69633.1%3B (U82513) random slug cDNA25 protein [Dictyostelium%3B E%3D0.012 gene gene6989 http://www.ncbi.nlm.nih.gov/gene/?term=RB12544 RB12549 RB12549 RB12549 6761150 6762505 - N-6 adenine-specific DNA methylase best DB hits: BLAST: ddbj:BAB05490.1%3B (AP001513) BH1771~~unknown conserved protein%3B E%3D3e-96 swissprot:P50840%3B YPSC_BACSU HYPOTHETICAL 43.5 KD PROTEIN IN%3B E%3D8e-88 gb:AAK05749.1%3B AE006395_9 (AE006395) HYPOTHETICAL PROTEIN%3B E%3D8e-72 COG: BH1771%3B COG0116 Predicted N6-adenine-specific DNA methylases%3B E%3D3e-97 PFAM: PF01170%3B Uncharacterized protein family UP%3B E%3D5.4e-113 gene gene6990 http://www.ncbi.nlm.nih.gov/gene/?term=RB12549 RB1255 RB1255 RB1255 640755 640910 - hypothetical protein gene gene667 http://www.ncbi.nlm.nih.gov/gene/?term=RB1255 RB12550 RB12550 RB12550 6762534 6762725 - hypothetical protein gene gene6991 http://www.ncbi.nlm.nih.gov/gene/?term=RB12550 RB12551 RB12551 scd scd 6762717 6763907 + fatty-acid desaturase PMID: 7929259 best DB hits: BLAST: ddbj:BAA03434.1%3B (D14581) fatty-acid desaturase [Anabaena%3B E%3D3e-44 gb:AAB61353.1%3B (U36390) delta-9 desaturase [Synechococcus sp. PCC%3B E%3D2e-42 gb:AAD00699.1%3B (U90417) delta 9 acyl-lipid fatty acid desaturase%3B E%3D4e-42 COG: sll0541%3B COG1398 Fatty-acid desaturase%3B E%3D7e-43 PFAM: PF01069%3B Fatty acid desaturase%3B E%3D1e-19 gene gene6992 http://www.ncbi.nlm.nih.gov/gene/?term=RB12551 RB12554 RB12554 RB12554 6764163 6764378 + hypothetical protein gene gene6993 http://www.ncbi.nlm.nih.gov/gene/?term=RB12554 RB12556 RB12556 RB12556 6764463 6765644 - hypothetical protein PMID: 8843436 best DB hits: BLAST: embl:CAB56131.1%3B (AL117669) hypothetical protein [Streptomyces%3B E%3D1e-22 pir:T35709%3B hypothetical protein SC7H1.14 SC7H1.14 - Streptomyces%3B E%3D6e-16 pir:S13421%3B polymeric globin alpha - brine shrimp (fragment) -----%3B E%3D0.087 gene gene6994 http://www.ncbi.nlm.nih.gov/gene/?term=RB12556 RB12557 RB12557 RB12557 6765659 6765784 - hypothetical protein gene gene6995 http://www.ncbi.nlm.nih.gov/gene/?term=RB12557 RB12558 RB12558 RB12558 6765837 6766604 + hypothetical protein gene gene6996 http://www.ncbi.nlm.nih.gov/gene/?term=RB12558 RB12559 RB12559 nagA nagA 6766660 6767877 - N-acetylglucosamine-6-phosphate deacetylase PMID: 2668691 PMID: 2190615 best DB hits: BLAST: pir:C70845%3B probable nagA protein - Mycobacterium tuberculosis%3B E%3D2e-33 gb:AAK05433.1%3B AE006366_2 (AE006366)%3B E%3D1e-32 gb:AAG58267.1%3B AE005542_9 (AE005542)%3B E%3D2e-32 COG: Rv3332%3B COG1820 N-acetylglucosamine-6-phosphate deacetylase%3B E%3D2e-34 Ta1060%3B COG0402 Cytosine deaminase and related metal-dependent%3B E%3D0.001 yicP%3B COG1001 Adenine deaminase%3B E%3D0.002 PFAM: PF01979%3B Adenine deaminase%3B E%3D0.071 PF01685%3B Chlorohydrolase%3B E%3D0.002 PF01979%3B Adenine deaminase%3B E%3D8.9e-07 gene gene6997 http://www.ncbi.nlm.nih.gov/gene/?term=RB12559 RB1256 RB1256 RB1256 640889 641044 - hypothetical protein gene gene668 http://www.ncbi.nlm.nih.gov/gene/?term=RB1256 RB12562 RB12562 adh adh 6767970 6769232 + alcohol dehydrogenase PMID: 2001402 best DB hits: BLAST: swissprot:P28036%3B DHET_ACEPO ALCOHOL DEHYDROGENASE [ACCEPTOR]%3B E%3D0.003 gb:AAB89850.1%3B (AE001008) conserved hypothetical protein%3B E%3D0.003 swissprot:Q44002%3B DHET_ACEEU ALCOHOL DEHYDROGENASE [ACCEPTOR]%3B E%3D0.004 COG: AF1399%3B COG1520 Uncharacterized proteins of WD40-like repeat family%3B E%3D3e-04 PFAM: PF01011%3B PQQ enzyme repeat%3B E%3D5.5e-05 gene gene6998 http://www.ncbi.nlm.nih.gov/gene/?term=RB12562 RB12564 RB12564 RB12564 6769320 6770612 + NADH-dependent dehydrogenase-like protein best DB hits: BLAST: gb:AAC23913.1%3B (AF039207) NADH-dependent dehydrogenase homolog%3B E%3D1e-09 swissprot:O05389%3B YRBE_BACSU HYPOTHETICAL 37.8 KDA PROTEIN IN%3B E%3D6e-09 pir:D72381%3B dehydrogenase - Thermotoga maritima (strain MSB8)%3B E%3D3e-07 COG: BS_yrbE%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D5e-10 PFAM: PF01408%3B Oxidoreductase%2C NAD-bindi%3B E%3D3.4e-16 gene gene6999 http://www.ncbi.nlm.nih.gov/gene/?term=RB12564 RB12566 RB12566 RB12566 6770624 6772111 - sulfatase best DB hits: PFAM: PF00884%3B Sulfatase%3B E%3D0.63 gene gene7000 http://www.ncbi.nlm.nih.gov/gene/?term=RB12566 RB12567 RB12567 RB12567 6772108 6774933 - hypothetical protein best DB hits: PFAM: PF02704%3B Gibberellin regulated protein%3B E%3D0.082 PF00034%3B Cytochrome c%3B E%3D0.79 gene gene7001 http://www.ncbi.nlm.nih.gov/gene/?term=RB12567 RB1257 RB1257 RB1257 641119 642246 - hypothetical protein PMID: 10470850 best DB hits: BLAST: ddbj:BAB09588.1%3B (AB018118) gene_id:MRI1.6~~pir D64592~~similar to%3B E%3D1e-46 gene gene669 http://www.ncbi.nlm.nih.gov/gene/?term=RB1257 RB12570 RB12570 RB12570 6774854 6775450 + hypothetical protein gene gene7002 http://www.ncbi.nlm.nih.gov/gene/?term=RB12570 RB12571 RB12571 RB12571 6775435 6776475 - GGDEF family protein PMID: 10567266 best DB hits: BLAST: pir:E75266%3B GGDEF family protein - Deinococcus radiodurans (strain%3B E%3D2e-27 gb:AAA87378.1%3B (L42554) pleD gene product [Caulobacter%3B E%3D2e-25 gb:AAD28578.1%3B AF121341_2 (AF121341) response regulator%3B E%3D3e-25 COG: DR2498%3B COG2199 Diguanylate cyclase/phosphodiesterase domain 1%3B E%3D2e-28 TM1594%3B COG2199 Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF)%3B E%3D7e-21 yddV_2%3B COG2199 Diguanylate cyclase/phosphodiesterase domain 1%3B E%3D9e-21 PFAM: PF00897%3B Orbivirus inner capsid protein VP7%3B E%3D0.89 PF00498%3B FHA domain%3B E%3D1.3e-19 PF00990%3B GGDEF domain%3B E%3D3.2e-60 gene gene7003 http://www.ncbi.nlm.nih.gov/gene/?term=RB12571 RB12572 RB12572 RB12572 6776472 6778910 - serine/threonine-protein kinase PMID: 7768349 best DB hits: BLAST: pir:H69878%3B probable protein kinase (EC 2.7.1.-) yloP - Bacillus%3B E%3D1e-32 gb:AAF73695.1%3B (AE002226) serinethreonine-protein kinase%3B E%3D3e-32 embl:CAA10713.1%3B (AJ132604) hypothetical protein [Lactococcus%3B E%3D1e-31 COG: BS_yloP_1%3B COG0515 Serine/threonine protein kinases%3B E%3D1e-33 PFAM: PF00069%3B Protein kinase domain%3B E%3D2.1e-33 PF00515%3B TPR Domain%3B E%3D0.017 gene gene7004 http://www.ncbi.nlm.nih.gov/gene/?term=RB12572 RB12576 RB12576 RB12576 6778873 6779115 + hypothetical protein gene gene7005 http://www.ncbi.nlm.nih.gov/gene/?term=RB12576 RB12577 RB12577 efp efp 6779119 6779886 + translation elongation factor EF-P gene gene7006 http://www.ncbi.nlm.nih.gov/gene/?term=RB12577 RB1258 RB1258 RB1258 642250 642486 - hypothetical protein gene gene670 http://www.ncbi.nlm.nih.gov/gene/?term=RB1258 RB12580 RB12580 RB12580 6779930 6780121 - hypothetical protein gene gene7007 http://www.ncbi.nlm.nih.gov/gene/?term=RB12580 RB12581 RB12581 RB12581 6780073 6780597 - hypothetical protein gene gene7008 http://www.ncbi.nlm.nih.gov/gene/?term=RB12581 RB12583 RB12583 RB12583 6780591 6780791 + signal peptide gene gene7009 http://www.ncbi.nlm.nih.gov/gene/?term=RB12583 RB12586 RB12586 RB12586 6780825 6781466 + hypothetical protein gene gene7010 http://www.ncbi.nlm.nih.gov/gene/?term=RB12586 RB12588 RB12588 RB12588 6781485 6782735 - signal peptide gene gene7011 http://www.ncbi.nlm.nih.gov/gene/?term=RB12588 RB1259 RB1259 RB1259 642452 642631 + hypothetical protein gene gene671 http://www.ncbi.nlm.nih.gov/gene/?term=RB1259 RB12590 RB12590 RB12590 6782844 6784265 - hexosyltransferase PMID: 11157937 best DB hits: BLAST: swissprot:Q46638%3B AMSK_ERWAM AMYLOVORAN BIOSYNTHESIS PROTEIN AMSK%3B E%3D9e-14 ddbj:BAB07095.1%3B (AP001518) lipopolysaccharide biosynthesis%3B E%3D1e-13 pir:A82265%3B probable polysaccharide biosynthesis protein VC0925%3B E%3D3e-13 COG: BH3376%3B COG0438 Predicted glycosyltransferases%3B E%3D1e-14 PFAM: PF00534%3B Glycosyl transferases group 1%3B E%3D1.3e-32 gene gene7012 http://www.ncbi.nlm.nih.gov/gene/?term=RB12590 RB12596 RB12596 RB12596 6784272 6784457 - hypothetical protein gene gene7013 http://www.ncbi.nlm.nih.gov/gene/?term=RB12596 RB12597 RB12597 leuB leuB 6784428 6785555 + 3-isopropylmalate dehydrogenase PMID: 3547331 best DB hits: BLAST: ddbj:BAB06776.1%3B (AP001517) 3-isopropylmalate dehydrogenase%3B E%3D1e-102 swissprot:P05645%3B LEU3_BACSU 3-ISOPROPYLMALATE DEHYDROGENASE%3B E%3D1e-101 pir:A26522%3B 3-isopropylmalate dehydrogenase (EC 1.1.1.85) - Bacillus%3B E%3D1e-100 COG: BH3057%3B COG0473 Isocitrate/isopropylmalate dehydrogenase%3B E%3D1e-103 PFAM: PF00180%3B Isocitrate and isopropylmalate dehyd%3B E%3D5.4e-201 gene gene7014 http://www.ncbi.nlm.nih.gov/gene/?term=RB12597 RB12598 RB12598 cdsA cdsA 6785640 6786605 + phosphatidate cytidylyltransferase PMID: 2995358 PMID: 2995359 best DB hits: BLAST: gb:AAK04086.1%3B (AE006236) unknown [Pasteurella multocida]%3B E%3D7e-53 pir:A83329%3B probable phosphatidate cytidylyltransferase PA2536%3B E%3D2e-51 pir:H82138%3B probable phosphatidate cytidylyltransferase VC1936%3B E%3D2e-32 COG: PA2536%3B COG0575 CDP-diglyceride synthetase%3B E%3D2e-52 PFAM: PF01148%3B Phosphatidate cytidylyltransf%3B E%3D5.5e-08 gene gene7015 http://www.ncbi.nlm.nih.gov/gene/?term=RB12598 RB12599 RB12599 RB12599 6786668 6787201 + flavoprotein PMID: 10567266 best DB hits: BLAST: pir:A75455%3B hypothetical protein - Deinococcus radiodurans (strain%3B E%3D2e-16 ddbj:BAB13746.1%3B (AB032601) azoreductase [Bacillus sp. OY1-2]%3B E%3D2e-05 gb:AAD13563.1%3B (AF080235) reductase homolog [Streptomyces%3B E%3D5e-04 COG: BH2050%3B COG0431 Predicted flavoprotein%3B E%3D6e-05 gene gene7016 http://www.ncbi.nlm.nih.gov/gene/?term=RB12599 RB1260 RB1260 RB1260 642702 643742 + signal peptide gene gene672 http://www.ncbi.nlm.nih.gov/gene/?term=RB1260 RB12601 RB12601 wecG wecG 6787357 6788190 - UDP-N-acetyl-D-mannosaminuronic acid transferase PMID: 8905231 best DB hits: BLAST: pir:S74482%3B UDP-N-acetyl-D-mannosaminuronic acid transferase rffM-1%3B E%3D6e-44 pir:C82265%3B UDP-N-acetyl-D-mannosamine transferase VC0927 [imported]%3B E%3D2e-20 gb:AAC78668.1%3B (AF094575) N-acetyl-mannosamine%3B E%3D1e-15 COG: slr1118%3B COG1922 Teichoic acid biosynthesis proteins%3B E%3D5e-45 gene gene7017 http://www.ncbi.nlm.nih.gov/gene/?term=RB12601 RB12602 RB12602 RB12602 6788187 6789167 - chitooligosaccharide deacetylase best DB hits: BLAST: pir:T35588%3B probable secreted protein - Streptomyces coelicolor%3B E%3D0.24 ddbj:BAB05636.1%3B (AP001513) chitooligosaccharide deacetylase%3B E%3D0.63 PFAM: PF01522%3B Polysaccharide deacetylase%3B E%3D0.00027 gene gene7018 http://www.ncbi.nlm.nih.gov/gene/?term=RB12602 RB12604 RB12604 RB12604 6789164 6790570 - hexosyltransferase best DB hits: BLAST: gb:AAF14309.1%3B (U45308) SqdX [Synechococcus sp. PCC 7942]%3B E%3D0.009 pir:T34839%3B probable hexosyltransferase (EC 2.4.1.-) SC2G5.06%3B E%3D0.031 pir:T35514%3B probable glycosyl transferase - Streptomyces coelicolor%3B E%3D0.072 gene gene7019 http://www.ncbi.nlm.nih.gov/gene/?term=RB12604 RB12606 RB12606 RB12606 6790580 6791866 - Cps2E PMID: 99184998 best DB hits: BLAST: gb:AAD24451.1%3B AF118389_8 (AF118389) Cps2E [Streptococcus suis]%3B E%3D4e-34 pir:S75572%3B glucosyltransferase - Synechocystis sp. (strain PCC%3B E%3D1e-33 pir:JC5726%3B phosphate-prenyl glycosyl-1-phosphate transferase (EC%3B E%3D9e-33 COG: slr0820%3B COG2148 Sugar transferases involved in lipopolysaccharide%3B E%3D9e-35 PFAM: PF02397%3B Bacterial sugar transferase%3B E%3D3.6e-52 gene gene7020 http://www.ncbi.nlm.nih.gov/gene/?term=RB12606 RB12608 RB12608 RB12608 6791928 6793742 - hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:D83367%3B hypothetical protein PA2235 [imported] - Pseudomonas%3B E%3D0.002 swissprot:P33698%3B EXOP_RHIME SUCCINOGLYCAN BIOSYNTHESIS TRANSPORT%3B E%3D0.010 pir:S37031%3B probable succinoglycan transport protein exoP -%3B E%3D0.021 COG: PA2235%3B COG3206 Uncharacterized protein involved in%3B E%3D2e-04 gene gene7021 http://www.ncbi.nlm.nih.gov/gene/?term=RB12608 RB12610 RB12610 RB12610 6793700 6793957 + hypothetical protein gene gene7022 http://www.ncbi.nlm.nih.gov/gene/?term=RB12610 RB12611 RB12611 RB12611 6793964 6794791 + methyltransferase best DB hits: BLAST: pir:S75267%3B hypothetical protein slr1039 - Synechocystis sp. (strain%3B E%3D5e-07 swissprot:P46326%3B YXBB_BACSU HYPOTHETICAL 28.2 KDA PROTEIN IN%3B E%3D7e-06 gb:AAG29793.1%3B AF235050_16 (AF235050) methyltransferase%3B E%3D0.005 COG: slr1039%3B COG0500 SAM-dependent methyltransferases%3B E%3D5e-08 VC1257%3B COG2227%3B E%3D9e-04 BH2331%3B COG0500 SAM-dependent methyltransferases%3B E%3D0.001 gene gene7023 http://www.ncbi.nlm.nih.gov/gene/?term=RB12611 RB12612 RB12612 RB12612 6794730 6794969 + hypothetical protein gene gene7024 http://www.ncbi.nlm.nih.gov/gene/?term=RB12612 RB12614 RB12614 thyA thyA 6794945 6795739 + thymidylate synthase ThyA%3B catalyzes formation of dTMP and 7%2C8-dihydrofolate from 5%2C10-methylenetetrahydrofolate and dUMP%3B involved in deoxyribonucleotide biosynthesis%3B there are 2 copies in some Bacilli%2C one of which appears to be phage-derived gene gene7025 http://www.ncbi.nlm.nih.gov/gene/?term=RB12614 RB12617 RB12617 folA folA 6795837 6796424 + dihydrofolate reductase PMID: 320005 best DB hits: BLAST: gb:AAD56934.1%3B AF180145_26 (AF180145) dihydrofolate reductase%3B E%3D1e-23 swissprot:P12833%3B DYR3_SALTY DIHYDROFOLATE REDUCTASE TYPE III%3B E%3D5e-22 pir:G82322%3B dihydrofolate reductase VC0440 [imported] - Vibrio%3B E%3D1e-20 COG: VC0440%3B COG0262 Dihydrofolate reductase%3B E%3D1e-21 PFAM: PF00186%3B Dihydrofolate reductase%3B E%3D2.9e-40 gene gene7026 http://www.ncbi.nlm.nih.gov/gene/?term=RB12617 RB1262 RB1262 dnaE dnaE 643894 647331 - DNA polymerase III alpha subunit PMID: 3316192 best DB hits: BLAST: pir:F83561%3B probable DNA polymerase alpha chain PA0669 [imported] -%3B E%3D0.0 pir:A70972%3B probable DNA polymerase III alpha chain - Mycobacterium%3B E%3D1e-176 swissprot:O34623%3B DP3A_BACSU DNA POLYMERASE III%2C ALPHA CHAIN -----%3B E%3D1e-108 COG: PA0669%3B COG0587 DNA polymerase III alpha subunit%3B E%3D0.0 PFAM: PF02231%3B PHP domain N-terminal region%3B E%3D3.3e-19 PF01336%3B OB-fold nucleic acid binding domain%3B E%3D6.8e-05 gene gene673 http://www.ncbi.nlm.nih.gov/gene/?term=RB1262 RB12621 RB12621 RB12621 6796604 6796861 - hypothetical protein gene gene7027 http://www.ncbi.nlm.nih.gov/gene/?term=RB12621 RB12623 RB12623 rpsM rpsM 6796904 6797287 + 30S ribosomal protein S13 located at the top of the head of the 30S subunit%2C it contacts several helices of the 16S rRNA%3B makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5%3B contacts P-site tRNA gene gene7028 http://www.ncbi.nlm.nih.gov/gene/?term=RB12623 RB12625 RB12625 rpsK rpsK 6797354 6797737 + 30S ribosomal protein S11 located on the platform of the 30S subunit%2C it bridges several disparate RNA helices of the 16S rRNA%3B forms part of the Shine-Dalgarno cleft in the 70S ribosome%3B interacts with S7 and S18 and IF-3 gene gene7029 http://www.ncbi.nlm.nih.gov/gene/?term=RB12625 RB12626 RB12626 rpoA rpoA 6797797 6798792 + DNA-directed RNA polymerase subunit alpha catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme gene gene7030 http://www.ncbi.nlm.nih.gov/gene/?term=RB12626 RB12628 RB12628 rplQ rplQ 6798878 6799510 + 50S ribosomal protein L17 PMID: 2989779 PMID: 10094780 best DB hits: BLAST: swissprot:Q9Z9H5%3B RL17_THETH 50S RIBOSOMAL PROTEIN L17 -----%3B E%3D7e-11 pir:B75313%3B ribosomal protein L17 - Deinococcus radiodurans (strain%3B E%3D3e-09 swissprot:Q9ZCT0%3B RL17_RICPR 50S RIBOSOMAL PROTEIN L17 -----%3B E%3D3e-09 COG: DR2129%3B COG0203 Ribosomal protein L17%3B E%3D2e-10 PFAM: PF01196%3B Ribosomal protein L17%3B E%3D4.2e-06 gene gene7031 http://www.ncbi.nlm.nih.gov/gene/?term=RB12628 RB12629 RB12629 RB12629 6799598 6799726 - hypothetical protein gene gene7032 http://www.ncbi.nlm.nih.gov/gene/?term=RB12629 RB1263 RB1263 RB1263 647136 648260 + NifR3 family protein PMID: 8355615 best DB hits: BLAST: pir:C72038%3B conserved hypothetical protein CP1104 [imported] -%3B E%3D1e-31 swissprot:P45672%3B NIR3_AZOBR NIFR3-LIKE PROTEIN ----- pir:%3B E%3D2e-31 pir:A81750%3B NifR3Smm1 family protein TC0013 [imported] - Chlamydia%3B E%3D1e-30 COG: CPn0768%3B COG0042 Predicted TIM-barrel enzymes%2C possibly%3B E%3D1e-32 yhdG%3B COG0042 Predicted TIM-barrel enzymes%2C possibly dehydrogenases%2C%3B E%3D1e-23 Cj0123c%3B COG0042 Predicted TIM-barrel enzymes%2C possibly%3B E%3D8e-23 PFAM: PF01207%3B Uncharacterized protein famil%3B E%3D5.7e-62 gene gene674 http://www.ncbi.nlm.nih.gov/gene/?term=RB1263 RB12630 RB12630 RB12630 6799678 6800712 + signal peptide gene gene7033 http://www.ncbi.nlm.nih.gov/gene/?term=RB12630 RB12631 RB12631 RB12631 6800639 6802222 + signal peptide best DB hits: PFAM: PF00327%3B Ribosomal protein L30p/L7e%3B E%3D0.19 gene gene7034 http://www.ncbi.nlm.nih.gov/gene/?term=RB12631 RB12633 RB12633 RB12633 6802219 6803169 + protein associating with small stress protein PASS1 PMID: 10751411 best DB hits: BLAST: gb:AAD48846.1%3B AF168362_1 (AF168362) protein associating with%3B E%3D3e-05 gb:AAF56739.2%3B (AE003762) CG12879 gene product [Drosophila%3B E%3D4e-05 pir:T15138%3B hypothetical protein T28F2.4 - Caenorhabditis elegans%3B E%3D5e-04 COG: NMB1786%3B COG2850 Uncharacterized ACR%3B E%3D0.007 PFAM: PF02373%3B jmjC domain%3B E%3D0.018 gene gene7035 http://www.ncbi.nlm.nih.gov/gene/?term=RB12633 RB12634 RB12634 RB12634 6803224 6803694 - signal peptide gene gene7036 http://www.ncbi.nlm.nih.gov/gene/?term=RB12634 RB12636 RB12636 acc acc 6803801 6805087 - acetyl-CoA carboxylase PMID: 7592499 best DB hits: BLAST: pir:A57710%3B acetyl-CoA carboxylase (EC 6.4.1.2) - wheat -----%3B E%3D2e-05 prf:2208491A%3B Ac-CoA carboxylase [Triticum aestivum]%3B E%3D2e-05 pir:T09538%3B acetyl-CoA carboxylase (EC 6.4.1.2) - alfalfa -----%3B E%3D3e-05 COG: PA0494%3B COG0439 Biotin carboxylase%3B E%3D2e-04 carB%3B COG0458 Carbamoylphosphate synthase large subunit (split gene%3B E%3D0.001 DR0668%3B COG0458 Carbamoylphosphate synthase large subunit (split%3B E%3D0.002 PFAM: PF02786%3B Carbamoyl-phosphate synthase L ch%3B E%3D0.49 gene gene7037 http://www.ncbi.nlm.nih.gov/gene/?term=RB12636 RB12638 RB12638 apbA apbA 6805084 6806130 - 2-dehydropantoate 2-reductase PMID: 9488683 best DB hits: BLAST: swissprot:O50098%3B APBA_PYRHO PROBABLE 2-DEHYDROPANTOATE%3B E%3D5e-09 embl:CAB04765.1%3B (Z82004) ORF12(1) [Rhodococcus erythropolis]%3B E%3D2e-08 pir:T35004%3B probable oxidoreductase - Streptomyces coelicolor%3B E%3D5e-06 COG: PH1390%3B COG1893 Ketopantoate reductase%3B E%3D5e-10 PFAM: PF02558%3B Ketopantoate reductase PanE/ApbA%3B E%3D0.00046 gene gene7038 http://www.ncbi.nlm.nih.gov/gene/?term=RB12638 RB12639 RB12639 RB12639 6806127 6806249 - hypothetical protein gene gene7039 http://www.ncbi.nlm.nih.gov/gene/?term=RB12639 RB12640 RB12640 RB12640 6806299 6807978 - auxin-responsive-like protein PMID: 11538549 best DB hits: BLAST: gb:AAD32141.1%3B AF123503_1 (AF123503) Nt-gh3 deduced protein%3B E%3D6e-16 pir:T00515%3B hypothetical protein T20D16.20 - Arabidopsis thaliana%3B E%3D1e-15 ddbj:BAA97524.1%3B (AB026634) auxin-responsive-like protein%3B E%3D1e-14 gene gene7040 http://www.ncbi.nlm.nih.gov/gene/?term=RB12640 RB12643 RB12643 RB12643 6807977 6808588 + hypothetical protein gene gene7041 http://www.ncbi.nlm.nih.gov/gene/?term=RB12643 RB12645 RB12645 RB12645 6808336 6808707 - hypothetical protein gene gene7042 http://www.ncbi.nlm.nih.gov/gene/?term=RB12645 RB12646 RB12646 RB12646 6808846 6810339 - histidine kinase PMID: 8282725 best DB hits: BLAST: embl:CAB54579.1%3B (AJ006397) histidine kinase [Streptococcus%3B E%3D2e-10 gb:AAG59311.1%3B AE005644_5 (AE005644) sensor protein for basR%3B E%3D6e-10 pir:E83212%3B probable sensorresponse regulator hybrid PA3462%3B E%3D3e-09 COG: PA3462%3B COG0642 Sensory transduction histidine kinases%3B E%3D3e-10 PFAM: PF00512%3B His Kinase A (phosphoacceptor)%3B E%3D2.1e-10 PF02518%3B Histidine kinase-%2C DNA gyrase B%3B E%3D6.2e-15 gene gene7043 http://www.ncbi.nlm.nih.gov/gene/?term=RB12646 RB12648 RB12648 RB12648 6810287 6810496 + hypothetical protein gene gene7044 http://www.ncbi.nlm.nih.gov/gene/?term=RB12648 RB12649 RB12649 RB12649 6810538 6810876 - hypothetical protein gene gene7045 http://www.ncbi.nlm.nih.gov/gene/?term=RB12649 RB12652 RB12652 glmS glmS 6810910 6812694 + glucosamine-fructose-6-phosphate aminotransferase PMID: 7476196 best DB hits: BLAST: embl:CAB87226.1%3B (AL163641) glucosamine-fructose-6-phosphate%3B E%3D1e-135 pir:T44486%3B glutamine--fructose-6-phosphate transaminase%3B E%3D1e-133 gb:AAF09884.1%3B AE001891_3 (AE001891)%3B E%3D1e-132 COG: DR0302%3B COG0449 Glucosamine 6-phosphate synthetase%2C contains%3B E%3D1e-133 PFAM: PF00310%3B Glutamine amidotransferases class-II%3B E%3D2.1e-65 PF01380%3B SIS domain%3B E%3D2.2e-39 gene gene7046 http://www.ncbi.nlm.nih.gov/gene/?term=RB12652 RB12653 RB12653 RB12653 6812798 6813016 + hypothetical protein gene gene7047 http://www.ncbi.nlm.nih.gov/gene/?term=RB12653 RB12656 RB12656 leuA leuA 6813143 6814678 + 3-isopropylmalate dehydratase large subunit dehydratase component%2C catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate gene gene7048 http://www.ncbi.nlm.nih.gov/gene/?term=RB12656 RB12658 RB12658 leuD leuD 6814851 6815441 + 3-isopropylmalate dehydratase small subunit PMID: 2993799 best DB hits: BLAST: ddbj:BAB06774.1%3B (AP001517) 3-isopropylmalate dehydratase small%3B E%3D3e-60 pir:E81128%3B 3-isopropylmalate dehydratase%2C small chain NMB1034%3B E%3D2e-58 pir:C81836%3B probable 3-isopropylmalate dehydratase (EC 4.2.1.33)%3B E%3D5e-58 COG: BH3055%3B COG0066 3-isopropylmalate dehydratase small subunit%3B E%3D3e-61 PFAM: PF00694%3B Aconitase C-terminal domain%3B E%3D5e-62 gene gene7049 http://www.ncbi.nlm.nih.gov/gene/?term=RB12658 RB1266 RB1266 RB1266 648505 648804 - hypothetical protein gene gene675 http://www.ncbi.nlm.nih.gov/gene/?term=RB1266 RB12660 RB12660 RB12660 6815630 6816235 + signal peptide gene gene7050 http://www.ncbi.nlm.nih.gov/gene/?term=RB12660 RB12661 RB12661 pyrF pyrF 6816342 6817250 + orotidine 5-phosphate decarboxylase PMID: 8787418 best DB hits: BLAST: swissprot:P96076%3B DCOP_THETH OROTIDINE 5'-PHOSPHATE DECARBOXYLASE%3B E%3D3e-38 pir:G75302%3B orotidine 5'-phosphate decarboxylase - Deinococcus%3B E%3D5e-35 gb:AAG19923.1%3B (AE005076) orotidine-5'-monophosphate (Ura3)%3B PyrF%3B E%3D4e-33 COG: DR2200_2%3B COG0284 Orotidine-5'-phosphate decarboxylase%3B E%3D1e-35 gene gene7051 http://www.ncbi.nlm.nih.gov/gene/?term=RB12661 RB12662 RB12662 RB12662 6817193 6817408 + hypothetical protein gene gene7052 http://www.ncbi.nlm.nih.gov/gene/?term=RB12662 RB12663 RB12663 RB12663 6817409 6817711 + hypothetical protein gene gene7053 http://www.ncbi.nlm.nih.gov/gene/?term=RB12663 RB12664 RB12664 RB12664 6817708 6818412 + hypothetical protein gene gene7054 http://www.ncbi.nlm.nih.gov/gene/?term=RB12664 RB12666 RB12666 RB12666 6818273 6821890 + molybdopterin oxidoreductase%2C iron-sulfur binding subunit best DB hits: BLAST: gb:AAB91057.1%3B (AE001094) molybdopterin oxidoreductase%2C iron-sulfur%3B E%3D5e-29 gb:AAG19285.1%3B (AE005024) molybdopterin oxidoreductase%3B HmoA%3B E%3D3e-26 gb:AAB90738.1%3B (AE001069) molybdopterin oxidoreductase%2C iron-sulfur%3B E%3D1e-24 COG: AF0175%3B COG0437 Fe-S-cluster-containing hydrogenase components 1%3B E%3D5e-30 PFAM: PF01568%3B Molydopterin dinucleotide bin%3B E%3D0.018 PF00037%3B 4Fe-4S binding domain%3B E%3D0.15 gene gene7055 http://www.ncbi.nlm.nih.gov/gene/?term=RB12666 RB12668 RB12668 RB12668 6820061 6821848 - hypothetical protein gene gene7056 http://www.ncbi.nlm.nih.gov/gene/?term=RB12668 RB12669 RB12669 RB12669 6821952 6823373 + molybdopterin oxidoreductase%2C membrane subunit best DB hits: BLAST: gb:AAB91058.1%3B (AE001094) molybdopterin oxidoreductase%2C membrane%3B E%3D5e-06 pir:T50876%3B hypothetical membrane protein [imported] - Rubrivivax%3B E%3D7e-06 gb:AAG19286.1%3B (AE005024) molybdopterin oxidoreductase%3B Moz%3B E%3D0.019 gene gene7057 http://www.ncbi.nlm.nih.gov/gene/?term=RB12669 RB12673 RB12673 RB12673 6823458 6824990 + hypothetical protein gene gene7058 http://www.ncbi.nlm.nih.gov/gene/?term=RB12673 RB12676 RB12676 RB12676 6825025 6826353 + signal peptide best DB hits: PFAM: PF01473%3B cell wall binding repea%3B E%3D0.31 PF02326%3B YMF19 hypothetical plant mitocho%3B E%3D0.59 gene gene7059 http://www.ncbi.nlm.nih.gov/gene/?term=RB12676 RB12677 RB12677 RB12677 6826426 6826722 + signal peptide gene gene7060 http://www.ncbi.nlm.nih.gov/gene/?term=RB12677 RB12679 RB12679 RB12679 6826760 6827779 + hypothetical protein best DB hits: BLAST: embl:CAC08530.1%3B (AJ249578) hypothetical protein [Rhodothermus%3B E%3D1e-39 pir:A70488%3B hypothetical protein aq_2189 - Aquifex aeolicus -----%3B E%3D1e-18 ddbj:BAA06975.1%3B (D32217) ORF3 [Desulfovibrio vulgaris]%3B E%3D1e-09 COG: aq_2189%3B COG1999 Uncharacterized protein SCO1/SenC/PrrC%2C involved in%3B E%3D1e-19 gene gene7061 http://www.ncbi.nlm.nih.gov/gene/?term=RB12679 RB12680 RB12680 RB12680 6827752 6827877 + hypothetical protein gene gene7062 http://www.ncbi.nlm.nih.gov/gene/?term=RB12680 RB12681 RB12681 ctaC ctaC 6827847 6829028 + cytochrome oxidase subunit II PMID: 7678007 best DB hits: BLAST: embl:CAC08531.1%3B (AJ249578) cytochrome oxidase subunit II%3B E%3D1e-53 swissprot:Q04441%3B COX2_BACFI CYTOCHROME C OXIDASE POLYPEPTIDE II%3B E%3D2e-18 pir:A23711%3B cytochrome-c oxidase (EC 1.9.3.1) chain IIc precursor -%3B E%3D4e-13 COG: slr1136%3B COG1622 Heme/copper-type cytochrome/quinol oxidases%2C%3B E%3D2e-10 PFAM: PF00116%3B Cytochrome C oxidase subunit II%2C%3B E%3D5.6e-05 PF00034%3B Cytochrome c%3B E%3D1.5e-05 gene gene7063 http://www.ncbi.nlm.nih.gov/gene/?term=RB12681 RB12683 RB12683 ctaD ctaD 6829129 6830871 + cytochrome oxidase subunit I PMID: 20576172 best DB hits: BLAST: embl:CAC08532.1%3B (AJ249578) cytochrome oxidase subunit I%3B E%3D1e-146 ddbj:BAA06976.1%3B (D32217) cytochrome c oxidase-like protein%3B E%3D1e-122 swissprot:Q06473%3B COX1_SYNY3 CYTOCHROME C OXIDASE POLYPEPTIDE I%3B E%3D3e-99 COG: slr1137%3B COG0843 Heme/copper-type cytochrome/quinol oxidases%2C%3B E%3D1e-100 RP405%3B COG0843 Heme/copper-type cytochrome/quinol oxidases%2C subunit%3B E%3D3e-93 BS_ctaD%3B COG0843 Heme/copper-type cytochrome/quinol oxidases%2C%3B E%3D4e-91 PFAM: PF00115%3B Cytochrome C and Quinol oxidase pol%3B E%3D8.3e-185 gene gene7064 http://www.ncbi.nlm.nih.gov/gene/?term=RB12683 RB12684 RB12684 RB12684 6830874 6831038 - hypothetical protein gene gene7065 http://www.ncbi.nlm.nih.gov/gene/?term=RB12684 RB12685 RB12685 ctaE ctaE 6831007 6832302 + cytochrome oxidase subunit III PMID: 20576172 best DB hits: BLAST: embl:CAC08533.1%3B (AJ249578) cytochrome oxidase subunit III%3B E%3D3e-27 embl:CAA98149.1%3B (Z73914) ORF175 protein [Pseudomonas stutzeri]%3B E%3D2e-08 gb:AAG34379.1%3B AF197466_2 (AF197466) NirO [Pseudomonas%3B E%3D3e-08 COG: APE0793_2%3B COG1845 Heme/copper-type cytochrome/quinol oxidase%2C%3B E%3D5e-08 slr2083%3B COG1845 Heme/copper-type cytochrome/quinol oxidase%2C subunit%3B E%3D8e-08 VNG0662G%3B COG1845 Heme/copper-type cytochrome/quinol oxidase%2C%3B E%3D2e-06 gene gene7066 http://www.ncbi.nlm.nih.gov/gene/?term=RB12685 RB12687 RB12687 ctaF ctaF 6832365 6832757 + cytochrome oxidase subunit IV PMID: 7678007 best DB hits: BLAST: embl:CAC08534.1%3B (AJ249578) cytochrome oxidase subunit IV%3B E%3D0.025 gene gene7067 http://www.ncbi.nlm.nih.gov/gene/?term=RB12687 RB12689 RB12689 RB12689 6833004 6833324 + signal peptide gene gene7068 http://www.ncbi.nlm.nih.gov/gene/?term=RB12689 RB1269 RB1269 RB1269 648801 649412 - hypothetical protein gene gene676 http://www.ncbi.nlm.nih.gov/gene/?term=RB1269 RB12690 RB12690 kpsU kpsU 6833336 6834088 - 3-deoxy-manno-octulosonate cytidylyltransferase CMP-2-keto-3-deoxyoctulosonic acid synthetase%3B catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS gene gene7069 http://www.ncbi.nlm.nih.gov/gene/?term=RB12690 RB12691 RB12691 RB12691 6834085 6834264 - hypothetical protein gene gene7070 http://www.ncbi.nlm.nih.gov/gene/?term=RB12691 RB12692 RB12692 RB12692 6834241 6836013 + permease best DB hits: BLAST: ddbj:BAB05232.1%3B (AP001512) BH1513~~unknown conserved protein in%3B E%3D3e-36 pir:S76103%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D8e-35 COG: BH1513%3B COG2252 Permeases%3B E%3D2e-37 gene gene7071 http://www.ncbi.nlm.nih.gov/gene/?term=RB12692 RB12693 RB12693 RB12693 6836007 6836192 - hypothetical protein gene gene7072 http://www.ncbi.nlm.nih.gov/gene/?term=RB12693 RB12694 RB12694 RB12694 6836147 6837178 - serine/threonine kinase PMID: 7768349 best DB hits: BLAST: pir:T42076%3B protein kinase homolog - Streptomyces coelicolor -----%3B E%3D2e-12 gb:AAG48248.1%3B AF282407_1 (AF282407) p70 ribosomal protein S6%3B E%3D2e-12 gb:AAF22219.1%3B AF141378_1 (AF141378) protein kinase PK4 [Zea mays]%3B E%3D2e-12 COG: BS_yloP_1%3B COG0515 Serine/threonine protein kinases%3B E%3D2e-12 PFAM: PF01636%3B Aminoglycoside phosphotransferas%3B E%3D0.093 PF00069%3B Protein kinase domain%3B E%3D6.3e-17 PF00285%3B Citrate synthase%3B E%3D0.22 gene gene7073 http://www.ncbi.nlm.nih.gov/gene/?term=RB12694 RB12696 RB12696 RB12696 6837183 6837380 + hypothetical protein gene gene7074 http://www.ncbi.nlm.nih.gov/gene/?term=RB12696 RB12697 RB12697 RB12697 6837436 6842547 + adhesin best DB hits: BLAST: embl:CAC19834.1%3B (AJ401093) hypothetical protein [Actinomyces%3B E%3D0.065 ddbj:BAB10333.1%3B (AB016872) gene_id:K21P3.2~~unknown protein%3B E%3D0.081 pir:T28679%3B fibrinogen-binding protein homolog - Staphylococcus%3B E%3D0.26 PFAM: PF00404%3B Dockerin type I repeat%3B E%3D0.01 gene gene7075 http://www.ncbi.nlm.nih.gov/gene/?term=RB12697 RB127 RB127 RB127 54487 55539 - hypothetical protein gene gene69 http://www.ncbi.nlm.nih.gov/gene/?term=RB127 RB1270 RB1270 RB1270 649173 649637 + translation initiation inhibitor PMID: 9634230 best DB hits: BLAST: pir:G70790%3B probable transcriptional regulator Rv3678c - Mycobacterium%3B E%3D5e-20 pir:T36560%3B hypothetical protein SCH17.09c - Streptomyces coelicolor%3B E%3D6e-18 embl:CAB62819.1%3B (AL133436) hypothetical protein L7276.02%3B E%3D4e-17 COG: Rv3678c%3B COG0251 translation initiation inhibitor%3B E%3D5e-21 PFAM: PF01042%3B YjgF family%3B E%3D0.22 gene gene677 http://www.ncbi.nlm.nih.gov/gene/?term=RB1270 RB12700 RB12700 RB12700 6842722 6844113 - signal peptide gene gene7076 http://www.ncbi.nlm.nih.gov/gene/?term=RB12700 RB12702 RB12702 RB12702 6844083 6844877 - signal peptide gene gene7077 http://www.ncbi.nlm.nih.gov/gene/?term=RB12702 RB12705 RB12705 RB12705 6844874 6845134 - hypothetical protein gene gene7078 http://www.ncbi.nlm.nih.gov/gene/?term=RB12705 RB12707 RB12707 RB12707 6845145 6846587 - hypothetical protein gene gene7079 http://www.ncbi.nlm.nih.gov/gene/?term=RB12707 RB12710 RB12710 RB12710 6846593 6846703 + hypothetical protein gene gene7080 http://www.ncbi.nlm.nih.gov/gene/?term=RB12710 RB12711 RB12711 RB12711 6846807 6848021 + hypothetical protein gene gene7081 http://www.ncbi.nlm.nih.gov/gene/?term=RB12711 RB12713 RB12713 RB12713 6848021 6849088 + signal peptide PMID: 11759840 best DB hits: PFAM: PF01040%3B UbiA prenyltransferase%3B E%3D2.4e-11 gene gene7082 http://www.ncbi.nlm.nih.gov/gene/?term=RB12713 RB12716 RB12716 RB12716 6849115 6849459 - hypothetical protein gene gene7083 http://www.ncbi.nlm.nih.gov/gene/?term=RB12716 RB12718 RB12718 RB12718 6849432 6850577 + tRNA adenylyltransferase PMID: 10910347 best DB hits: BLAST: gb:AAK00328.1%3B AF320250_1 (AF320250) YmdA [Lactobacillus%3B E%3D0.029 pir:F82689%3B tRNA adenylyltransferase XF1362 [imported] - Xylella%3B E%3D0.044 pir:D71218%3B hypothetical protein PH0007 - Pyrococcus horikoshii%3B E%3D0.054 COG: XF1362%3B COG0617 tRNA nucleotidyltransferase/poly(A) polymerase%3B E%3D0.004 PH0007%3B COG2413 Uncharacterized ACR%3B E%3D0.005 PFAM: PF01966%3B HD domain%3B E%3D0.0033 gene gene7084 http://www.ncbi.nlm.nih.gov/gene/?term=RB12718 RB1272 RB1272 RB1272 649696 650688 + hypothetical protein gene gene678 http://www.ncbi.nlm.nih.gov/gene/?term=RB1272 RB12720 RB12720 RB12720 6850620 6856325 - mannan-binding protein MBP (lectin) PMID: 10607664 best DB hits: BLAST: gb:AAB94071.1%3B (AF022226) mannan-binding lectin%3B collectin%3B E%3D0.004 swissprot:P49259%3B PA2R_BOVIN 180 KD SECRETORY PHOSPHOLIPASE A2%3B E%3D0.10 gb:AAA48719.1%3B (J04028) proteoglycan core protein [Gallus gallus]%3B E%3D0.11 PFAM: PF00059%3B Lectin C-type domain%3B E%3D0.0043 gene gene7085 http://www.ncbi.nlm.nih.gov/gene/?term=RB12720 RB12724 RB12724 RB12724 6856415 6858241 - adenine-specific methyltransferase PMID: 1542567 best DB hits: BLAST: pir:H65118%3B hypothetical adenine-specific methylase in fis- envR%3B E%3D4e-29 swissprot:P28638%3B YHDJ_ECOLI HYPOTHETICAL ADENINE-SPECIFIC%3B E%3D4e-29 gb:AAG58390.1%3B AE005554_1 (AE005554) methyltransferase%3B E%3D6e-29 COG: yhdJ%3B COG0863 Adenine-specific DNA methylase%3B E%3D4e-30 jhp1284%3B COG2189 Adenine specific DNA methylase Mod%3B E%3D2e-09 jhp0248%3B COG0863 Adenine-specific DNA methylase%3B E%3D1e-07 PFAM: PF01555%3B DNA methylase%3B E%3D2e-41 gene gene7086 http://www.ncbi.nlm.nih.gov/gene/?term=RB12724 RB12727 RB12727 RB12727 6858259 6860301 - hypothetical protein PMID: 9501997 best DB hits: BLAST: ddbj:BAB10033.1%3B (AB007727) contains similarity to unknown%3B E%3D0.18 gene gene7087 http://www.ncbi.nlm.nih.gov/gene/?term=RB12727 RB12730 RB12730 RB12730 6860259 6860840 - ECF subfamily RNA polymerase sigma-70 factor PMID: 9139909 best DB hits: BLAST: gb:AAC45221.1%3B (U87307) extracytoplasmic function alternative%3B E%3D5e-08 gb:AAC45219.1%3B (U87308) extracytoplasmic function alternative%3B E%3D1e-06 pir:H70507%3B probable sigE protein - Mycobacterium tuberculosis%3B E%3D7e-06 COG: Rv1221%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D7e-07 Rv3286c%3B COG1191 DNA-directed RNA polymerase specialized sigma%3B E%3D2e-04 slr1545%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D2e-04 PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D6e-06 PF00140%3B Sigma-70 factor%3B E%3D0.019 gene gene7088 http://www.ncbi.nlm.nih.gov/gene/?term=RB12730 RB12732 RB12732 RB12732 6860800 6862068 - hypothetical protein PMID: 12024217 gene gene7089 http://www.ncbi.nlm.nih.gov/gene/?term=RB12732 RB12734 RB12734 RB12734 6862186 6863889 - signal peptide gene gene7090 http://www.ncbi.nlm.nih.gov/gene/?term=RB12734 RB12737 RB12737 RB12737 6863917 6864114 + hypothetical protein gene gene7091 http://www.ncbi.nlm.nih.gov/gene/?term=RB12737 RB12739 RB12739 RB12739 6864106 6864276 - hypothetical protein gene gene7092 http://www.ncbi.nlm.nih.gov/gene/?term=RB12739 RB1274 RB1274 RB1274 650886 652316 + NADH:flavin oxidoreductase PMID: 10360571 best DB hits: BLAST: pir:D72379%3B hypothetical protein TM0428 - Thermotoga maritima%3B E%3D5e-56 pir:H75303%3B probable NADH-dependent flavin oxidoreductase -%3B E%3D3e-11 ddbj:BAB05200.1%3B (AP001512) NADH oxidase [Bacillus halodurans]%3B E%3D4e-09 COG: TM0428%3B COG1902 NADH:flavin oxidoreductases%2C Old Yellow Enzyme%3B E%3D4e-57 nemA%3B COG1902 NADH:flavin oxidoreductases%2C Old Yellow Enzyme family%3B E%3D3e-08 PA2932%3B COG1902 NADH:flavin oxidoreductases%2C Old Yellow Enzyme%3B E%3D6e-08 PFAM: PF00724%3B NADH:flavin oxidoreductase / NAD%3B E%3D2.5e-08 gene gene679 http://www.ncbi.nlm.nih.gov/gene/?term=RB1274 RB12740 RB12740 gnl gnl 6864364 6865551 - gluconolactonase [precursor] PMID: 1482681 best DB hits: BLAST: swissprot:Q01578%3B GNL_ZYMMO GLUCONOLACTONASE PRECURSOR%3B E%3D1e-54 gb:AAK03332.1%3B (AE006164) unknown [Pasteurella multocida]%3B E%3D1e-39 pir:B82698%3B gluconolactonase precursor XF1297 [imported] - Xylella%3B E%3D3e-39 COG: XF1297%3B COG3386 Uncharacterized protein%3B E%3D3e-40 gene gene7093 http://www.ncbi.nlm.nih.gov/gene/?term=RB12740 RB12741 RB12741 RB12741 6865612 6868329 - hypothetical protein gene gene7094 http://www.ncbi.nlm.nih.gov/gene/?term=RB12741 RB12744 RB12744 RB12744 6868320 6868430 - hypothetical protein gene gene7095 http://www.ncbi.nlm.nih.gov/gene/?term=RB12744 RB12745 RB12745 purM purM 6868433 6869674 + phosphoribosylaminoimidazole synthetase catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis gene gene7096 http://www.ncbi.nlm.nih.gov/gene/?term=RB12745 RB12746 RB12746 mutM mutM 6869843 6870727 + formamidopyrimidine-DNA glycosylase PMID: 7704272 best DB hits: BLAST: swissprot:O53191%3B YO64_MYCTU DNA GLYCOSYLASE RV2464C%3B E%3D6e-55 embl:CAC10002.1%3B (AL442143) DNA repair hydrolase%3B E%3D6e-46 swissprot:P95744%3B FPG_SYNEN FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE%3B E%3D1e-14 COG: Rv2464c%3B COG0266 Formamidopyrimidine-DNA glycosylase%3B E%3D2e-55 PFAM: PF01149%3B Formamidopyrimidine-DNA glycos%3B E%3D4.3e-40 gene gene7097 http://www.ncbi.nlm.nih.gov/gene/?term=RB12746 RB12747 RB12747 RB12747 6870758 6870919 + hypothetical protein gene gene7098 http://www.ncbi.nlm.nih.gov/gene/?term=RB12747 RB12748 RB12748 RB12748 6870944 6871483 + hypothetical protein gene gene7100 http://www.ncbi.nlm.nih.gov/gene/?term=RB12748 RB12749 RB12749 RB12749 6870941 6871765 - hypothetical protein gene gene7099 http://www.ncbi.nlm.nih.gov/gene/?term=RB12749 RB1275 RB1275 RB1275 652320 652544 - hypothetical protein gene gene680 http://www.ncbi.nlm.nih.gov/gene/?term=RB1275 RB12751 RB12751 RB12751 6871720 6872103 + hypothetical protein gene gene7101 http://www.ncbi.nlm.nih.gov/gene/?term=RB12751 RB12752 RB12752 degP degP 6871994 6873523 + serine proteinase PMID: 2180903 best DB hits: BLAST: pir:F83550%3B serine proteinase MucD precursor PA0766 [imported] -%3B E%3D1e-50 swissprot:Q44597%3B DEGP_BRUAB PROBABLE SERINE PROTEASE DO-LIKE%3B E%3D9e-47 gb:AAK01318.1%3B (AF190580) MucD [Pseudomonas syringae pv.%3B E%3D2e-46 COG: PA0766%3B COG0265 Trypsin-like serine proteases%2C typically%3B E%3D1e-51 htrA%3B COG0265 Trypsin-like serine proteases%2C typically periplasmic%2C%3B E%3D9e-44 aq_1450%3B COG0265 Trypsin-like serine proteases%2C typically%3B E%3D2e-43 PFAM: PF00089%3B Trypsin%3B E%3D1.8e-14 PF00595%3B PDZ domain (Also known as DHR or GLG%3B E%3D1.4e-10 gene gene7102 http://www.ncbi.nlm.nih.gov/gene/?term=RB12752 RB12755 RB12755 RB12755 6873726 6874088 - hypothetical protein gene gene7103 http://www.ncbi.nlm.nih.gov/gene/?term=RB12755 RB12756 RB12756 leuA leuA 6873997 6875685 - 2-isopropylmalate synthase PMID: 6171647 best DB hits: BLAST: ddbj:BAB06777.1%3B (AP001517) 2-isopropylmalate synthase [Bacillus%3B E%3D1e-133 pir:A75045%3B 2-isopropylmalate synthase (leua-1) PAB0890 - Pyrococcus%3B E%3D1e-131 pir:F75391%3B 2-isopropylmalate synthase - Deinococcus radiodurans%3B E%3D1e-131 COG: BH3058%3B COG0119 Isopropylmalate/homocitrate/citramalate synthases%3B E%3D1e-134 PFAM: PF00682%3B HMGL-like%3B E%3D1.7e-127 gene gene7104 http://www.ncbi.nlm.nih.gov/gene/?term=RB12756 RB12758 RB12758 RB12758 6875827 6875946 + hypothetical protein gene gene7105 http://www.ncbi.nlm.nih.gov/gene/?term=RB12758 RB12759 RB12759 RB12759 6876167 6876916 - hypothetical protein gene gene7106 http://www.ncbi.nlm.nih.gov/gene/?term=RB12759 RB1276 RB1276 RB1276 652505 652696 - hypothetical protein gene gene681 http://www.ncbi.nlm.nih.gov/gene/?term=RB1276 RB12760 RB12760 RB12760 6876908 6877060 + hypothetical protein gene gene7107 http://www.ncbi.nlm.nih.gov/gene/?term=RB12760 RB12761 RB12761 RB12761 6877026 6877190 + hypothetical protein gene gene7108 http://www.ncbi.nlm.nih.gov/gene/?term=RB12761 RB12762 RB12762 nrdA nrdA 6877208 6880330 + vitamin B12-dependent ribonucleotide reductase catalyzes the reduction of ribonucleotides to deoxyribonucleotides%3B the rate-limiting step in dNTP synthesis gene gene7109 http://www.ncbi.nlm.nih.gov/gene/?term=RB12762 RB12766 RB12766 RB12766 6880940 6882055 + hypothetical protein PMID: 11557134 best DB hits: BLAST: pir:C82181%3B conserved hypothetical protein VC1592 [imported] -%3B E%3D2e-15 pir:G70332%3B conserved hypothetical protein aq_367 - Aquifex aeolicus%3B E%3D6e-15 pir:D83238%3B hypothetical protein PA3258 [imported] - Pseudomonas%3B E%3D2e-13 COG: VC1592%3B COG2200 Diguanylate cyclase/phosphodiesterase domain 2 (EAL)%3B E%3D1e-16 aq_367_3%3B COG2200 Diguanylate cyclase/phosphodiesterase domain 2%3B E%3D6e-16 VC1641%3B COG2200 Diguanylate cyclase/phosphodiesterase domain 2 (EAL)%3B E%3D2e-09 PFAM: PF00498%3B FHA domain%3B E%3D6.6e-15 PF00563%3B Domain of unknown function 2%3B E%3D3.1e-07 gene gene7110 http://www.ncbi.nlm.nih.gov/gene/?term=RB12766 RB12768 RB12768 pilB pilB 6882231 6884336 + type IV fimbrial assembly protein PilB PMID: 1971619 PMID: 1944223 best DB hits: BLAST: pir:E72032%3B general secretion pathway protein E CP1055 [imported] -%3B E%3D6e-91 embl:CAA70956.1%3B (Y09824) etpE [Escherichia coli]%3B E%3D2e-93 gb:AAC70102.1%3B (AF074613) type II secretion protein [Escherichia%3B E%3D6e-94 COG: slr0063%3B COG2804 Predicted ATPases involved in pili biogenesis%2C PilB%3B E%3D1e-81 PFAM: PF00004%3B ATPase associated with variou%3B E%3D0.0009 PF00005%3B ABC transporter%3B E%3D0.074 PF00448%3B SRP54-type protein%2C GTPase domain%3B E%3D0.01 gene gene7111 http://www.ncbi.nlm.nih.gov/gene/?term=RB12768 RB1277 RB1277 RB1277 652712 653143 + signal peptide gene gene682 http://www.ncbi.nlm.nih.gov/gene/?term=RB1277 RB12770 RB12770 RB12770 6884306 6884806 - hypothetical protein gene gene7112 http://www.ncbi.nlm.nih.gov/gene/?term=RB12770 RB12771 RB12771 RB12771 6884361 6884558 + hypothetical protein gene gene7113 http://www.ncbi.nlm.nih.gov/gene/?term=RB12771 RB12773 RB12773 pilT pilT 6884826 6885932 + twitching motility protein PilT PMID: 1676385 best DB hits: BLAST: pir:C70365%3B twitching motility protein PilT - Aquifex aeolicus%3B E%3D7e-81 pir:B75333%3B twitching mobility protein - Deinococcus radiodurans%3B E%3D9e-81 embl:CAB56295.1%3B (AJ249385) twitching motility protein%3B E%3D2e-77 COG: aq_745%3B COG2805 Predicted ATPases involved in pili biogenesis%2C PilT%3B E%3D6e-82 TM0837%3B COG2804 Predicted ATPases involved in pili biogenesis%2C PilB%3B E%3D4e-27 PFAM: PF00437%3B Bacterial type II secretion syst%3B E%3D0.18 PF02283%3B Cobinamide kinase / cobinamide p%3B E%3D0.86 PF00437%3B Bacterial type II secretion syst%3B E%3D1.5e-51 gene gene7114 http://www.ncbi.nlm.nih.gov/gene/?term=RB12773 RB12774 RB12774 pilB pilB 6885973 6887763 + type IV fimbrial assembly protein PilB PMID: 1971619 best DB hits: BLAST: pir:C75333%3B general secretion pathway protein E - Deinococcus%3B E%3D1e-105 pir:B70469%3B type IV pilus assembly protein TapB - Aquifex aeolicus%3B E%3D1e-104 swissprot:P45792%3B TAPB_AERHY TYPE IV PILUS ASSEMBLY PROTEIN TAPB%3B E%3D1e-100 COG: DR1964%3B COG2804 Predicted ATPases involved in pili biogenesis%2C PilB%3B E%3D1e-107 PFAM: PF00005%3B ABC transporter%3B E%3D0.27 PF00448%3B SRP54-type protein%2C GTPase doma%3B E%3D0.01 PF00004%3B ATPase associated with v%3B E%3D0.0029 gene gene7115 http://www.ncbi.nlm.nih.gov/gene/?term=RB12774 RB12778 RB12778 RB12778 6887872 6888231 + hypothetical protein crystal structure of protein from Xanthomonas shows pentameric toroidal structure%3B physiological function is unknown gene gene7116 http://www.ncbi.nlm.nih.gov/gene/?term=RB12778 RB12781 RB12781 pilC pilC 6888383 6889822 + type IV fimbrial assembly protein PilC PMID: 1971619 best DB hits: BLAST: pir:A75344%3B pilin biogenesis protein - Deinococcus radiodurans%3B E%3D7e-48 swissprot:P22609%3B PILC_PSEAE FIMBRIAL ASSEMBLY PROTEIN PILC%3B E%3D7e-44 pir:C83078%3B still frameshift type 4 fimbrial biogenesis protein PilC%3B E%3D3e-41 COG: DR1863%3B COG1459 General secretory pathway protein F%3B E%3D6e-49 PFAM: PF00482%3B Bacterial type II secretion system p%3B E%3D1.2e-68 gene gene7117 http://www.ncbi.nlm.nih.gov/gene/?term=RB12781 RB12782 RB12782 RB12782 6889819 6889986 - hypothetical protein gene gene7118 http://www.ncbi.nlm.nih.gov/gene/?term=RB12782 RB12783 RB12783 RB12783 6889970 6891277 + hypothetical protein best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.62 gene gene7119 http://www.ncbi.nlm.nih.gov/gene/?term=RB12783 RB12785 RB12785 RB12785 6891325 6892548 + signal peptide gene gene7120 http://www.ncbi.nlm.nih.gov/gene/?term=RB12785 RB12786 RB12786 RB12786 6892551 6893792 + hypothetical protein best DB hits: PFAM: PF02501%3B Bacterial type II secretion system p%3B E%3D0.41 PF00114%3B Pilin (bacterial filament)%3B E%3D0.025 gene gene7121 http://www.ncbi.nlm.nih.gov/gene/?term=RB12786 RB12787 RB12787 RB12787 6893792 6895354 + signal peptide gene gene7122 http://www.ncbi.nlm.nih.gov/gene/?term=RB12787 RB1279 RB1279 RB1279 653260 653697 + peptidyl-prolyl cis-trans isomerase%2C FkbP-type best DB hits: BLAST: gb:AAF35906.1%3B AF232672_1 (AF232672) FK506-binding protein%3B E%3D7e-06 pir:A83180%3B probable peptidyl-prolyl cis-trans isomerase%2C%3B E%3D3e-04 prf:2204313A%3B FK506-binding protein 65kD [Mus musculus]%3B E%3D9e-04 COG: PA3717%3B COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1%3B E%3D3e-05 PFAM: PF00254%3B FKBP-type peptidyl-prolyl cis-trans%3B E%3D6.8e-10 gene gene683 http://www.ncbi.nlm.nih.gov/gene/?term=RB1279 RB12790 RB12790 RB12790 6895351 6902541 + hypothetical protein best DB hits: PFAM: PF01537%3B Herpesvirus glycoprotein D%3B E%3D0.038 gene gene7123 http://www.ncbi.nlm.nih.gov/gene/?term=RB12790 RB12795 RB12795 RB12795 6902552 6904978 + signal peptide best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.53 gene gene7124 http://www.ncbi.nlm.nih.gov/gene/?term=RB12795 RB12797 RB12797 RB12797 6905009 6905182 + hypothetical protein gene gene7125 http://www.ncbi.nlm.nih.gov/gene/?term=RB12797 RB12799 RB12799 polA polA 6905179 6908262 - DNA polymerase I PMID: 6276402 best DB hits: BLAST: gb:AAD28505.1%3B AF121780_1 (AF121780) DNA polymerase I [Rhodothermus%3B E%3D1e-166 swissprot:P43741%3B DPO1_HAEIN DNA POLYMERASE I (POL I) ----- pir:%3B E%3D1e-165 gb:AAC98908.1%3B (AF028719) DNA polymerase type I [Rhodothermus sp.%3B E%3D1e-164 COG: HI0856_2%3B COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase%3B E%3D1e-122 jhp1363_2%3B COG0749 DNA polymerase I - 3'-5' exonuclease and%3B E%3D1e-55 RP776_1%3B COG0258 5'-3' exonuclease (including N-terminal domain of%3B E%3D3e-46 PFAM: PF02739%3B 5'-3' exonuclease%2C N-terminal%3B E%3D1e-62 PF01367%3B 5'-3' exonuclease%2C C-terminal%3B E%3D2e-37 PF01612%3B 3'-5' exonuclease%3B E%3D2.5e-47 gene gene7126 http://www.ncbi.nlm.nih.gov/gene/?term=RB12799 RB128 RB128 gspE gspE 55536 56747 - general secretion pathway protein E PMID: 1588814 best DB hits: BLAST: pir:C75333%3B general secretion pathway protein E - Deinococcus%3B E%3D1e-44 swissprot:P37093%3B GSPE_VIBCH GENERAL SECRETION PATHWAY PROTEIN E%3B E%3D6e-44 pir:C83313%3B probable type II secretion protein PA2677 [imported] -%3B E%3D3e-43 COG: DR1964%3B COG2804 Predicted ATPases involved in pili biogenesis%2C PilB%3B E%3D1e-45 PFAM: PF00437%3B Bacterial type II secretion s%3B E%3D5.5e-12 PF00448%3B SRP54-type protein%2C GTPase do%3B E%3D0.15 PF00437%3B Bacterial type II secretion s%3B E%3D5.5e-52 gene gene70 http://www.ncbi.nlm.nih.gov/gene/?term=RB128 RB12800 RB12800 RB12800 6908240 6908710 + hypothetical protein gene gene7127 http://www.ncbi.nlm.nih.gov/gene/?term=RB12800 RB12802 RB12802 RB12802 6908746 6908985 + hypothetical protein gene gene7128 http://www.ncbi.nlm.nih.gov/gene/?term=RB12802 RB12803 RB12803 RB12803 6908939 6909112 - hypothetical protein gene gene7129 http://www.ncbi.nlm.nih.gov/gene/?term=RB12803 RB12804 RB12804 RB12804 6909137 6910618 + hypothetical protein PMID: 9851916 best DB hits: BLAST: gb:AAF60367.1%3B (AC006607) Hypothetical protein C09E7.a%3B E%3D0.015 gb:AAF60369.1%3B (AC006607) Hypothetical protein C09E7.c%3B E%3D0.20 gb:AAF17230.1%3B AF126020_1 (AF126020) B-cell receptor-associated%3B E%3D0.47 gene gene7130 http://www.ncbi.nlm.nih.gov/gene/?term=RB12804 RB12806 RB12806 RB12806 6910548 6911165 - hypothetical protein gene gene7131 http://www.ncbi.nlm.nih.gov/gene/?term=RB12806 RB12808 RB12808 RB12808 6911241 6912350 - signal peptide gene gene7132 http://www.ncbi.nlm.nih.gov/gene/?term=RB12808 RB1281 RB1281 RB1281 653595 654287 + hypothetical protein PMID: 10747959 gene gene684 http://www.ncbi.nlm.nih.gov/gene/?term=RB1281 RB12810 RB12810 RB12810 6912339 6912542 + hypothetical protein gene gene7133 http://www.ncbi.nlm.nih.gov/gene/?term=RB12810 RB12811 RB12811 RB12811 6912580 6912792 - hypothetical protein gene gene7134 http://www.ncbi.nlm.nih.gov/gene/?term=RB12811 RB12812 RB12812 fabH fabH 6912793 6914016 - 3-oxoacyl-ACP synthase FabH%3B beta-ketoacyl-acyl carrier protein synthase III%3B catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation%3B differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs gene gene7135 http://www.ncbi.nlm.nih.gov/gene/?term=RB12812 RB12813 RB12813 RB12813 6913968 6914183 - hypothetical protein gene gene7136 http://www.ncbi.nlm.nih.gov/gene/?term=RB12813 RB12814 RB12814 RB12814 6914337 6914528 - hypothetical protein gene gene7137 http://www.ncbi.nlm.nih.gov/gene/?term=RB12814 RB12815 RB12815 RB12815 6914525 6914656 - hypothetical protein gene gene7138 http://www.ncbi.nlm.nih.gov/gene/?term=RB12815 RB12816 RB12816 guaA guaA 6914710 6915483 + glutamine amidotransferase PMID: 3298209 best DB hits: BLAST: pir:E70885%3B hypothetical protein Rv2859c - Mycobacterium%3B E%3D2e-24 pir:C83609%3B probable glutamine amidotransferase PA0297 [imported] -%3B E%3D1e-19 pir:T36850%3B hypothetical protein SCI35.37 - Streptomyces coelicolor%3B E%3D1e-17 COG: Rv2859c%3B COG2071 Predicted glutamine amidotransferases%3B E%3D2e-25 PFAM: PF00117%3B Glutamine amidotransferase class-I%3B E%3D8.7e-05 gene gene7139 http://www.ncbi.nlm.nih.gov/gene/?term=RB12816 RB12818 RB12818 RB12818 6915498 6915989 - hypothetical protein gene gene7140 http://www.ncbi.nlm.nih.gov/gene/?term=RB12818 RB12820 RB12820 RB12820 6915996 6916142 - hypothetical protein gene gene7141 http://www.ncbi.nlm.nih.gov/gene/?term=RB12820 RB12821 RB12821 rplS rplS 6916205 6916558 - 50S ribosomal protein L19 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site gene gene7142 http://www.ncbi.nlm.nih.gov/gene/?term=RB12821 RB12823 RB12823 trmD trmD 6916578 6917306 - tRNA (guanine-N(1))-methyltransferase PMID: 6357787 PMID: 6337136 best DB hits: BLAST: ddbj:BAB06198.1%3B (AP001515) tRNA methyltransferase [Bacillus%3B E%3D8e-56 swissprot:O31741%3B TRMD_BACSU TRNA (GUANINE-N1)-METHYLTRANSFERASE%3B E%3D3e-54 gb:AAK05662.1%3B AE006387_5 (AE006387) tRNA methyltransferase%3B E%3D7e-54 COG: BH2479%3B COG0336 tRNA-(guanine-N1)-methyltransferase%3B E%3D8e-57 PFAM: PF01746%3B tRNA (Guanine-1)-methyltransferas%3B E%3D2.7e-101 gene gene7143 http://www.ncbi.nlm.nih.gov/gene/?term=RB12823 RB12824 RB12824 rpsP rpsP 6917303 6917743 - 30S ribosomal protein S16 PMID: 6357787 PMID: 8730873 best DB hits: BLAST: pir:T05282%3B ribosomal protein S16%2C organellar - Arabidopsis%3B E%3D3e-15 gb:AAK05667.1%3B AE006387_10 (AE006387) 30S ribosomal protein S16%3B E%3D7e-14 ddbj:BAA97024.1%3B (AB024035) 30S ribosomal protein S16%3B E%3D1e-13 COG: BH2483%3B COG0228 Ribosomal protein S16%3B E%3D2e-14 PFAM: PF00886%3B Ribosomal protein S16%3B E%3D1.8e-20 gene gene7144 http://www.ncbi.nlm.nih.gov/gene/?term=RB12824 RB12825 RB12825 ffh ffh 6917834 6919309 - signal recognition particle protein PMID: 6357787 PMID: 1279430 best DB hits: BLAST: pir:F72236%3B signal recognition particle protein - Thermotoga%3B E%3D2e-87 ddbj:BAB06203.1%3B (AP001515) signal recognition particle [Bacillus%3B E%3D2e-85 gb:AAF69242.1%3B AF173880_5 (AF173880) signal recognition particle%3B E%3D3e-84 COG: TM1565%3B COG0541 Signal recognition particle GTPase%3B E%3D2e-88 PFAM: PF02881%3B SRP54-type protein%2C helical b%3B E%3D8.8e-21 PF02223%3B Thymidylate kinase%3B E%3D0.33 PF00485%3B Phosphoribulokinase / Uridine%3B E%3D0.03 gene gene7145 http://www.ncbi.nlm.nih.gov/gene/?term=RB12825 RB12827 RB12827 RB12827 6919361 6919729 - signal peptide gene gene7146 http://www.ncbi.nlm.nih.gov/gene/?term=RB12827 RB12829 RB12829 RB12829 6919813 6920292 + hypothetical protein gene gene7147 http://www.ncbi.nlm.nih.gov/gene/?term=RB12829 RB12830 RB12830 RB12830 6920200 6920508 - hypothetical protein gene gene7148 http://www.ncbi.nlm.nih.gov/gene/?term=RB12830 RB12831 RB12831 RB12831 6920532 6921326 - dolichyl-phosphate mannose synthase PMID: 8813763 best DB hits: BLAST: pir:G69148%3B dolichyl-phosphate mannose synthase related protein 1 -%3B E%3D2e-19 pir:D69148%3B dolichyl-phosphate mannose synthase related protein 2 -%3B E%3D5e-18 embl:CAB61668.1%3B (AL133213) glycosyl transferase.%3B E%3D7e-18 COG: MTH377%3B COG0463 Glycosyltransferases involved in cell wall%3B E%3D2e-20 PFAM: PF00535%3B Glycosyl transferase%3B E%3D1.8e-23 gene gene7149 http://www.ncbi.nlm.nih.gov/gene/?term=RB12831 RB12833 RB12833 RB12833 6921305 6921634 + hypothetical protein gene gene7150 http://www.ncbi.nlm.nih.gov/gene/?term=RB12833 RB12836 RB12836 RB12836 6921619 6921735 + hypothetical protein gene gene7151 http://www.ncbi.nlm.nih.gov/gene/?term=RB12836 RB12837 RB12837 RB12837 6921732 6921929 + hypothetical protein gene gene7152 http://www.ncbi.nlm.nih.gov/gene/?term=RB12837 RB12839 RB12839 rplA rplA 6921934 6922611 + 50S ribosomal protein L1 in Escherichia coli and Methanococcus%2C this protein autoregulates expression%3B the binding site in the mRNA mimics the binding site in the 23S rRNA gene gene7153 http://www.ncbi.nlm.nih.gov/gene/?term=RB12839 RB1284 RB1284 RB1284 654412 654585 + ankyrin protein PMID: 8108379 PMID: 9665876 best DB hits: BLAST: pir:H71274%3B probable ankyrin - syphilis spirochete ----- gb:%3B E%3D0.37 gb:AAF49554.1%3B (AE003529) CG6017 gene product [Drosophila%3B E%3D0.43 gb:AAC26848.1%3B (AF049612) huntingtin interacting protein HYPH%3B E%3D0.45 PFAM: PF00023%3B Ank repeat%3B E%3D0.052 gene gene685 http://www.ncbi.nlm.nih.gov/gene/?term=RB1284 RB12840 RB12840 rplJ rplJ 6922785 6923309 + 50S ribosomal protein L10 PMID: 8969501 best DB hits: BLAST: pir:T01743%3B ribosomal protein L10%2C chloroplast - common tobacco%3B E%3D3e-08 swissprot:P42923%3B RL10_BACSU 50S RIBOSOMAL PROTEIN L10 (BL5) (COLD%3B E%3D3e-08 gb:AAK05367.1%3B AE006359_5 (AE006359) 50S ribosomal protein L10%3B E%3D8e-08 COG: BS_rplJ%3B COG0244 Ribosomal protein L10%3B E%3D3e-09 gene gene7154 http://www.ncbi.nlm.nih.gov/gene/?term=RB12840 RB12842 RB12842 rplL rplL 6923401 6923823 + 50S ribosomal protein L7/L12 PMID: 10488095 best DB hits: BLAST: pir:S30199%3B ribosomal protein L12.1 precursor%2C chloroplast - rye%3B E%3D3e-09 embl:CAA44226.1%3B (X62368) ribosomal protein L12-1a [Nicotiana%3B E%3D2e-08 prf:0601198A%3B polymerase beta%2CRNA [Escherichia coli]%3B E%3D4e-08 COG: aq_1937%3B COG0222 Ribosomal protein L7/L12%3B E%3D3e-07 PFAM: PF00542%3B Ribosomal protein L7/L12 C-term%3B E%3D4.6e-28 gene gene7155 http://www.ncbi.nlm.nih.gov/gene/?term=RB12842 RB12843 RB12843 RB12843 6923880 6923996 - hypothetical protein gene gene7156 http://www.ncbi.nlm.nih.gov/gene/?term=RB12843 RB12844 RB12844 RB12844 6924096 6925124 + hypothetical protein gene gene7157 http://www.ncbi.nlm.nih.gov/gene/?term=RB12844 RB12847 RB12847 RB12847 6925127 6925516 - hypothetical protein gene gene7158 http://www.ncbi.nlm.nih.gov/gene/?term=RB12847 RB12850 RB12850 RB12850 6925624 6926553 - transposase PMID: 11759840 best DB hits: BLAST: embl:CAB93418.1%3B (AL357524) transposase [Streptomyces%3B E%3D0.60 gene gene7159 http://www.ncbi.nlm.nih.gov/gene/?term=RB12850 RB12851 RB12851 RB12851 6926556 6926885 + hypothetical protein gene gene7160 http://www.ncbi.nlm.nih.gov/gene/?term=RB12851 RB12853 RB12853 RB12853 6926870 6926998 - hypothetical protein gene gene7161 http://www.ncbi.nlm.nih.gov/gene/?term=RB12853 RB12854 RB12854 fmt fmt 6927002 6928009 - methionyl-tRNA formyltransferase PMID: 1624424 PMID: 8432722 best DB hits: BLAST: swissprot:P23882%3B FMT_ECOLI METHIONYL-TRNA FORMYLTRANSFERASE%3B E%3D1e-44 gb:AAG58409.1%3B AE005556_2 (AE005556)%3B E%3D3e-44 pdb:2FMT%3B A Chain A%2C Methionyl-Trnafmet Formyltransferase%3B E%3D6e-44 COG: fmt%3B COG0223 Methionyl-tRNA formyltransferase%3B E%3D1e-45 PFAM: PF00551%3B Formyl transferase%3B E%3D6e-35 PF02911%3B Formyl transferase%2C C-terminal%3B E%3D6.3e-29 gene gene7162 http://www.ncbi.nlm.nih.gov/gene/?term=RB12854 RB12856 RB12856 def def 6927987 6928592 - peptide deformylase PMID: 8112305 best DB hits: BLAST: gb:AAG33972.1%3B (AF250958) peptide deformylase-like protein%3B E%3D4e-31 gb:AAG33980.1%3B AF269165_1 (AF269165) peptide deformylase%3B E%3D6e-31 pir:T48639%3B hypothetical protein T15N1.150 - Arabidopsis thaliana%3B E%3D1e-30 COG: PA0019%3B COG0242 N-formylmethionyl-tRNA deformylase%3B E%3D1e-26 PFAM: PF01327%3B Polypeptide deformylase%3B E%3D1.2e-59 gene gene7163 http://www.ncbi.nlm.nih.gov/gene/?term=RB12856 RB12858 RB12858 oppF oppF 6928649 6929710 - oligopeptide transport ATP-binding protein OppF PMID: 1738314 PMID: 9097039 best DB hits: BLAST: embl:CAC05751.1%3B (AL391751) peptide transport system%3B E%3D6e-96 ddbj:BAB07364.1%3B (AP001519) oligopeptide ABC transporter%3B E%3D1e-92 pir:B72424%3B oligopeptide ABC transporter ATP-binding protein -%3B E%3D3e-90 COG: BH3645%3B COG1124 ABC-type dipeptide/oligopeptide/nickel transport%3B E%3D1e-93 VNG2526G%3B COG1123 ATPase components of uncharacterized ABC-type%3B E%3D3e-84 BH0027%3B COG1124 ABC-type dipeptide/oligopeptide/nickel transport%3B E%3D3e-84 PFAM: PF00485%3B Phosphoribulokinase / Uridine%3B E%3D0.17 PF00004%3B ATPase associated with%3B E%3D0.029 PF00006%3B ATP synthase alpha/beta famil%3B E%3D0.25 gene gene7164 http://www.ncbi.nlm.nih.gov/gene/?term=RB12858 RB12859 RB12859 oppD oppD 6929686 6930771 - oligopeptide transport ATP-binding protein OppD PMID: 1738314 PMID: 1901616 best DB hits: BLAST: gb:AAG22037.1%3B AF305387_4 (AF305387) OppD [Bacillus thuringiensis]%3B E%3D2e-95 pir:H75380%3B peptide ABC transporter ATP-binding protein -%3B E%3D8e-93 gb:AAA62691.1%3B (M57689) sporulation protein [Bacillus subtilis]%3B E%3D1e-92 COG: DR1568%3B COG0444 ABC-type dipeptide/oligopeptide/nickel transport%3B E%3D7e-94 Rv1281c%3B COG1123 ATPase components of uncharacterized ABC-type%3B E%3D5e-80 TM1064%3B COG0444 ABC-type dipeptide/oligopeptide/nickel transport%3B E%3D1e-78 PFAM: PF01580%3B FtsK/SpoIIIE family%3B E%3D0.62 PF00005%3B ABC transporter%3B E%3D2.3e-63 gene gene7165 http://www.ncbi.nlm.nih.gov/gene/?term=RB12859 RB1286 RB1286 RB1286 654569 655774 - transposase PMID: 10708371 best DB hits: BLAST: gb:AAG55028.1%3B AE005248_9 (AE005248) receptor%3B E%3D4e-62 swissprot:P28917%3B YDCC_ECOLI H REPEAT-ASSOCIATED PROTEIN IN%3B E%3D5e-62 gb:AAG54539.1%3B AE005200_1 (AE005200) Z0271 gene product%3B E%3D9e-62 PFAM: PF01811%3B Transposase%3B E%3D5.2e-67 gene gene686 http://www.ncbi.nlm.nih.gov/gene/?term=RB1286 RB12860 RB12860 oppC oppC 6930768 6932003 - oligopeptide transport system permease OppC PMID: 1738314 PMID: 1901616 best DB hits: BLAST: pir:D82242%3B oligopeptide ABC transporter%2C permease VC1093%3B E%3D4e-50 swissprot:P45053%3B OPPC_HAEIN OLIGOPEPTIDE TRANSPORT SYSTEM%3B E%3D1e-46 pir:D70141%3B oligopeptide ABC transporter%2C permease (oppC-1)%3B E%3D5e-46 COG: VC1093%3B COG1173 ABC-type dipeptide/oligopeptide/nickel transport%3B E%3D4e-51 PFAM: PF00528%3B Binding-protein-dependent transpor%3B E%3D9.1e-10 gene gene7166 http://www.ncbi.nlm.nih.gov/gene/?term=RB12860 RB12861 RB12861 oppB oppB 6932000 6932929 - oligopeptide transport system permease OppB PMID: 1738314 PMID: 2187863 best DB hits: BLAST: ddbj:BAA14776.1%3B (D90763) Oligopeptide transport system permease%3B E%3D8e-56 swissprot:P31132%3B OPPB_ECOLI OLIGOPEPTIDE TRANSPORT SYSTEM%3B E%3D1e-55 pir:B38447%3B oligopeptide permease oppB homolog - Bacillus subtilis%3B E%3D2e-55 COG: oppB%3B COG0601 ABC-type dipeptide/oligopeptide/nickel transport%3B E%3D1e-56 PFAM: PF00528%3B Binding-protein-dependent transpor%3B E%3D0.00032 gene gene7167 http://www.ncbi.nlm.nih.gov/gene/?term=RB12861 RB12862 RB12862 oppA oppA 6932926 6934893 - oligopeptide-binding protein OppA PMID: 1738314 PMID: 1901616 best DB hits: BLAST: swissprot:P24141%3B OPPA_BACSU OLIGOPEPTIDE-BINDING PROTEIN OPPA%3B E%3D1e-60 pir:A38447%3B oligopeptide ABC transport system substrate-binding%3B E%3D1e-60 embl:CAB96044.1%3B (AJ250012) surface antigen [Borrelia afzelii]%3B E%3D6e-60 COG: BS_oppA%3B COG0747 ABC-type dipeptide/oligopeptide/nickel transport%3B E%3D1e-61 PFAM: PF00496%3B Bacterial extracellular solute-bind%3B E%3D1.3e-13 gene gene7168 http://www.ncbi.nlm.nih.gov/gene/?term=RB12862 RB12863 RB12863 RB12863 6934850 6935002 + hypothetical protein gene gene7169 http://www.ncbi.nlm.nih.gov/gene/?term=RB12863 RB12864 RB12864 aspC aspC 6935038 6936231 - aromatic amino acid aminotransferase catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate gene gene7170 http://www.ncbi.nlm.nih.gov/gene/?term=RB12864 RB12866 RB12866 RB12866 6936276 6937397 + hypothetical protein PMID: 8905231 best DB hits: BLAST: swissprot:P73079%3B YK42_SYNY3 HYPOTHETICAL 31.9 KD PROTEIN SLR2042%3B E%3D5e-19 pir:B83141%3B conserved hypothetical protein PA4030 [imported] -%3B E%3D3e-13 pir:C64962%3B probable membrane protein b1976 - Escherichia coli%3B E%3D5e-08 COG: slr2042%3B COG3228 Uncharacterized BCR%3B E%3D5e-20 TP0379%3B COG0653 Preprotein translocase subunit SecA (ATPase%2C RNA%3B E%3D0.001 yecA%3B COG3318 Predicted metal-binding protein related to the%3B E%3D0.002 PFAM: PF02810%3B SEC-C motif%3B E%3D5.3e-08 gene gene7171 http://www.ncbi.nlm.nih.gov/gene/?term=RB12866 RB12870 RB12870 RB12870 6937519 6937905 + hypothetical protein gene gene7172 http://www.ncbi.nlm.nih.gov/gene/?term=RB12870 RB12873 RB12873 RB12873 6937857 6938225 + hypothetical protein gene gene7173 http://www.ncbi.nlm.nih.gov/gene/?term=RB12873 RB12874 RB12874 RB12874 6938177 6938368 + hypothetical protein gene gene7174 http://www.ncbi.nlm.nih.gov/gene/?term=RB12874 RB12875 RB12875 RB12875 6938351 6939466 - hypothetical protein gene gene7175 http://www.ncbi.nlm.nih.gov/gene/?term=RB12875 RB12877 RB12877 RB12877 6939536 6939817 - hypothetical protein gene gene7176 http://www.ncbi.nlm.nih.gov/gene/?term=RB12877 RB12879 RB12879 RB12879 6939821 6939985 - hypothetical protein gene gene7177 http://www.ncbi.nlm.nih.gov/gene/?term=RB12879 RB1288 RB1288 RB1288 655835 656134 + hypothetical protein PMID: 10731132 PMID: 8108379 best DB hits: BLAST: gb:AAF49247.1%3B (AE003519) CG6896 gene product [Drosophila%3B E%3D9e-06 gb:AAF49547.1%3B (AE003528) CG5891 gene product [Drosophila%3B E%3D2e-04 gb:AAB86895.1%3B (AF034547) protein phosphatase M130 myosin%3B E%3D0.006 PFAM: PF00023%3B Ank repeat%3B E%3D5.1e-06 gene gene687 http://www.ncbi.nlm.nih.gov/gene/?term=RB1288 RB12881 RB12881 RB12881 6940037 6940450 - two-component response regulator PMID: 7699720 best DB hits: BLAST: gb:AAD20723.1%3B (AF051157) response regulator homolog OmpR [Vibrio%3B E%3D5e-09 pir:C82042%3B transcriptional regulator OmpR VC2714 [imported] - Vibrio%3B E%3D6e-09 pir:S42745%3B nitrogen assimilation regulatory protein ntrC -%3B E%3D9e-09 COG: VC2714%3B COG0745 Response regulators consisting of a CheY-like%3B E%3D6e-10 ompR%3B COG0745 Response regulators consisting of a CheY-like receiver%3B E%3D3e-09 slr0322_2%3B COG0784 CheY-like receiver domains%3B E%3D7e-09 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D1.7e-20 gene gene7178 http://www.ncbi.nlm.nih.gov/gene/?term=RB12881 RB12882 RB12882 RB12882 6940549 6941553 + hypothetical protein best DB hits: PFAM: PF00515%3B TPR Domain%3B E%3D0.058 gene gene7179 http://www.ncbi.nlm.nih.gov/gene/?term=RB12882 RB12885 RB12885 rluD rluD 6941550 6942554 + ribosomal large subunit pseudouridine synthase PMID: 9660827 best DB hits: BLAST: ddbj:BAB06261.1%3B (AP001515) BH2542~~unknown conserved protein%3B E%3D1e-53 swissprot:O50310%3B YBC5_CHLVI HYPOTHETICAL 36.7 KD PROTEIN IN BCHI%3B E%3D1e-53 pir:F72373%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D2e-53 COG: BH2542%3B COG0564 Pseudouridylate synthases%2C 23S RNA-specific%3B E%3D9e-55 PFAM: PF01479%3B S4 domain%3B E%3D0.0017 PF00849%3B RNA pseudouridylate synthase%3B E%3D7.8e-61 gene gene7180 http://www.ncbi.nlm.nih.gov/gene/?term=RB12885 RB12886 RB12886 RB12886 6942523 6943383 + hypothetical protein PMID: 10567266 best DB hits: BLAST: gb:AAF12561.1%3B AE001826_30 (AE001826) conserved hypothetical%3B E%3D4e-13 swissprot:P76262%3B YOAE_ECOLI HYPOTHETICAL 56.5 KD PROTEIN IN%3B E%3D2e-12 gb:AAG56805.1%3B AE005404_8 (AE005404) transport protein%3B E%3D2e-12 COG: DRB0131%3B COG0861 Membrane protein TerC%2C possibly involved in%3B E%3D4e-14 ygdQ%3B COG0861 Membrane protein TerC%2C possibly involved in tellurium%3B E%3D7e-10 yegH_1%3B COG0861 Membrane protein TerC%2C possibly involved in%3B E%3D5e-09 gene gene7181 http://www.ncbi.nlm.nih.gov/gene/?term=RB12886 RB1289 RB1289 RB1289 656235 656687 + hypothetical protein gene gene688 http://www.ncbi.nlm.nih.gov/gene/?term=RB1289 RB12890 RB12890 RB12890 6943463 6944401 + hypothetical protein gene gene7182 http://www.ncbi.nlm.nih.gov/gene/?term=RB12890 RB12891 RB12891 RB12891 6944411 6945187 + hypothetical protein best DB hits: BLAST: gb:AAC14880.1%3B (AF060080) hypothetical protein [Chlorobium%3B E%3D1e-06 pir:C75001%3B hypothetical protein PAB1341 - Pyrococcus abyssi (strain%3B E%3D3e-06 embl:CAB66204.1%3B (AL136502) hypothetical protein SCF43.15c.%3B E%3D5e-05 COG: PAB1341%3B COG2120 Uncharacterized proteins%2C LmbE homologs%3B E%3D3e-07 PFAM: PF02585%3B Uncharacterized LmbE-like protein%2C C%3B E%3D1.1e-05 gene gene7183 http://www.ncbi.nlm.nih.gov/gene/?term=RB12891 RB12892 RB12892 RB12892 6945243 6945632 + hypothetical protein gene gene7184 http://www.ncbi.nlm.nih.gov/gene/?term=RB12892 RB12895 RB12895 RB12895 6945636 6946097 + hypothetical protein gene gene7185 http://www.ncbi.nlm.nih.gov/gene/?term=RB12895 RB12897 RB12897 RB12897 6946117 6947028 - signal peptide gene gene7186 http://www.ncbi.nlm.nih.gov/gene/?term=RB12897 RB129 RB129 RB129 56777 56890 - hypothetical protein gene gene71 http://www.ncbi.nlm.nih.gov/gene/?term=RB129 RB12902 RB12902 RB12902 6947212 6948129 - serine/threonine-protein kinase PMID: 7774814 best DB hits: BLAST: pir:T36501%3B probable serinethreonine protein kinase - Streptomyces%3B E%3D1e-18 pir:H75566%3B probable serinethreonine protein kinase - Deinococcus%3B E%3D3e-17 swissprot:P71584%3B PKNB_MYCTU SERINETHREONINE-PROTEIN%3B E%3D6e-17 COG: DR0058_1%3B COG0515 Serine/threonine protein kinases%3B E%3D3e-18 PFAM: PF00231%3B ATP synthase%3B E%3D0.83 PF00069%3B Protein kinase domain%3B E%3D5.8e-27 gene gene7187 http://www.ncbi.nlm.nih.gov/gene/?term=RB12902 RB12904 RB12904 accD accD 6948133 6949071 - acetyl-CoA carboxylase carboxyltransferase subunit beta PMID: 1355086 best DB hits: BLAST: swissprot:Q54776%3B ACCD_SYNP7 ACETYL-COENZYME A CARBOXYLASE%3B E%3D1e-71 swissprot:Q57417%3B ACCD_SYNY3 ACETYL-COENZYME A CARBOXYLASE%3B E%3D1e-69 gb:AAC08084.1%3B (U38804) acetyl-CoA carboxylase carboxytransferase%3B E%3D2e-68 COG: sll0336%3B COG0777 Acetyl-CoA carboxylase beta subunit%3B E%3D1e-70 PFAM: PF00790%3B VHS domain%3B E%3D0.27 PF01039%3B Carboxyl transferase domain%3B E%3D0.037 gene gene7188 http://www.ncbi.nlm.nih.gov/gene/?term=RB12904 RB12905 RB12905 RB12905 6949080 6950939 - acetolactate synthase III [precursor] PMID: 1896019 best DB hits: BLAST: swissprot:P27819%3B ILV3_BRANA ACETOLACTATE SYNTHASE III%2C%3B E%3D1e-167 swissprot:P27818%3B ILV1_BRANA ACETOLACTATE SYNTHASE I%2C CHLOROPLAST%3B E%3D1e-167 pir:S15004%3B acetolactate synthase (EC 4.1.3.18) 2 precursor - rape%3B E%3D1e-167 COG: AF1720%3B COG0028 Thiamine pyrophosphate-requiring enzymes%3B E%3D1e-129 ilvG%3B COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate%3B E%3D1e-123 slr2088%3B COG0028 Thiamine pyrophosphate-requiring enzymes%3B E%3D1e-121 PFAM: PF02776%3B Thiamine pyrophosphate enzyme%2C%3B E%3D9.8e-87 PF00205%3B Thiamine pyrophosphate enzyme%2C%3B E%3D1.2e-55 PF02775%3B Thiamine pyrophosphate enzyme%2C%3B E%3D7.1e-89 gene gene7189 http://www.ncbi.nlm.nih.gov/gene/?term=RB12905 RB12907 RB12907 RB12907 6950775 6951461 + hypothetical protein best DB hits: PFAM: PF02537%3B CrcB-like protein%3B E%3D0.02 gene gene7190 http://www.ncbi.nlm.nih.gov/gene/?term=RB12907 RB12908 RB12908 RB12908 6951125 6954388 + hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:D83260%3B hypothetical protein PA3080 [imported] - Pseudomonas%3B E%3D1e-04 gb:AAK01518.1%3B (AF241171) oxidoreductase [Pseudomonas%3B E%3D0.38 PFAM: PF02012%3B BNR repeat%3B E%3D0.027 gene gene7191 http://www.ncbi.nlm.nih.gov/gene/?term=RB12908 RB1291 RB1291 RB1291 656684 656977 + hypothetical protein gene gene689 http://www.ncbi.nlm.nih.gov/gene/?term=RB1291 RB12915 RB12915 RB12915 6954389 6955507 + hypothetical protein gene gene7192 http://www.ncbi.nlm.nih.gov/gene/?term=RB12915 RB12918 RB12918 RB12918 6955674 6957020 - signal peptide gene gene7193 http://www.ncbi.nlm.nih.gov/gene/?term=RB12918 RB12921 RB12921 tkt tkt 6957196 6959247 + transketolase PMID: 7859749 best DB hits: BLAST: swissprot:P45694%3B TKT_BACSU TRANSKETOLASE ----- pir: G69723%3B E%3D1e-171 ddbj:BAB06071.1%3B (AP001515) transketolase [Bacillus halodurans]%3B E%3D1e-169 swissprot:Q43848%3B TKTC_SOLTU TRANSKETOLASE%2C CHLOROPLAST PRECURSOR%3B E%3D1e-164 COG: BS_tkt%3B COG0021 Transketolase%3B E%3D1e-172 PFAM: PF00456%3B Transketolase%2C thiamine dipho%3B E%3D1.1e-160 PF02779%3B Transketolase%2C central domain%3B E%3D1.2e-77 PF02780%3B Transketolase%2C C-terminal dom%3B E%3D1.1e-49 gene gene7194 http://www.ncbi.nlm.nih.gov/gene/?term=RB12921 RB12924 RB12924 purA purA 6959448 6960761 + adenylosuccinate synthetase PMID: 3058695 PMID: 10364182 best DB hits: BLAST: swissprot:P73290%3B PURA_SYNY3 ADENYLOSUCCINATE SYNTHETASE%3B E%3D8e-98 swissprot:Q9X8P6%3B PURA_STRCO ADENYLOSUCCINATE SYNTHETASE%3B E%3D7e-94 swissprot:O08381%3B PURA_MYCTU ADENYLOSUCCINATE SYNTHETASE%3B E%3D1e-93 COG: Rv0357c%3B COG0104 Adenylosuccinate synthase%3B E%3D1e-94 PFAM: PF00709%3B Adenylosuccinate synthetase%3B E%3D5.7e-66 gene gene7195 http://www.ncbi.nlm.nih.gov/gene/?term=RB12924 RB12925 RB12925 RB12925 6960879 6960998 - hypothetical protein gene gene7196 http://www.ncbi.nlm.nih.gov/gene/?term=RB12925 RB12926 RB12926 RB12926 6961042 6961533 - hypothetical protein gene gene7197 http://www.ncbi.nlm.nih.gov/gene/?term=RB12926 RB12928 RB12928 RB12928 6961579 6962727 + beta-lactamase or penicillin-binding protein PMID: 9324260 best DB hits: BLAST: pir:T35155%3B hypothetical protein SC5A7.06c SC5A7.06c - Streptomyces%3B E%3D2e-36 gb:AAF26905.1%3B AF210843_2 (AF210843) unknown [Sorangium%3B E%3D9e-34 swissprot:Q11037%3B YD67_MYCTU HYPOTHETICAL 41.3 KDA PROTEIN RV1367C%3B E%3D4e-31 COG: Rv1367c%3B COG1680 Beta-lactamase class C and other penicillin binding%3B E%3D3e-32 gene gene7198 http://www.ncbi.nlm.nih.gov/gene/?term=RB12928 RB12932 RB12932 RB12932 6963015 6963242 - hypothetical protein gene gene7199 http://www.ncbi.nlm.nih.gov/gene/?term=RB12932 RB12934 RB12934 RB12934 6963268 6964029 - hypothetical protein PMID: 9537320 best DB hits: BLAST: swissprot:O66631%3B Y274_AQUAE HYPOTHETICAL PROTEIN AQ_274 -----%3B E%3D4e-28 embl:CAA75617.1%3B (Y15422) hypothetical protein [Lactococcus%3B E%3D1e-26 pir:B72217%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D2e-26 COG: aq_274%3B COG0325 Predicted enzyme with a TIM-barrel fold%3B E%3D4e-29 PFAM: PF01168%3B Uncharacterized protein family UPF00%3B E%3D9e-11 gene gene7200 http://www.ncbi.nlm.nih.gov/gene/?term=RB12934 RB12936 RB12936 RB12936 6964130 6965872 - hypothetical protein PMID: 10567266 best DB hits: BLAST: pir:H75280%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D5e-27 swissprot:P71551%3B Y959_MYCTU HYPOTHETICAL 74.6 KDA PROTEIN RV0959%3B E%3D5e-21 gb:AAB89815.1%3B (AE001004) A. fulgidus predicted coding region%3B E%3D0.013 COG: AF1444%3B COG2304 Protein containing von Willebrand factor (vWF) type%3B E%3D0.001 gene gene7201 http://www.ncbi.nlm.nih.gov/gene/?term=RB12936 RB1294 RB1294 RB1294 657051 657236 - hypothetical protein gene gene690 http://www.ncbi.nlm.nih.gov/gene/?term=RB1294 RB12940 RB12940 RB12940 6966246 6966536 + transposase PMID: 2824781 best DB hits: BLAST: gb:AAG58100.1%3B AE005527_3 (AE005527) unknown protein encoded by%3B E%3D0.002 gb:AAG53987.1%3B AF327445_1 (AF327445) transposase A%3B E%3D0.003 gb:AAF28119.1%3B AF153317_15 (AF153317) InsA [Shigella%3B E%3D0.007 COG: PA1937%3B COG2963 Transposase%3B E%3D0.004 PFAM: PF01381%3B Helix-turn-helix%3B E%3D0.53 PF01527%3B Transposase%3B E%3D6.1e-18 gene gene7202 http://www.ncbi.nlm.nih.gov/gene/?term=RB12940 RB12941 RB12941 RB12941 6966539 6967417 + transposase PMID: 2824781 best DB hits: BLAST: gb:AAA88919.1%3B (U13013) ORFB [Leptospira interrogans]%3B E%3D3e-47 gb:AAA88916.1%3B (U13012) ORFB [Leptospira interrogans]%3B E%3D1e-46 gb:AAC05649.1%3B (AF038931) probable transposase-related protein%3B E%3D1e-45 COG: DRB0019.2%3B COG2801 transposase%3B E%3D1e-35 PFAM: PF00665%3B Integrase core domain%3B E%3D4.8e-40 gene gene7203 http://www.ncbi.nlm.nih.gov/gene/?term=RB12941 RB12942 RB12942 RB12942 6967507 6969009 - hypothetical protein gene gene7204 http://www.ncbi.nlm.nih.gov/gene/?term=RB12942 RB12945 RB12945 RB12945 6969132 6969560 + peptidyl-tRNA hydrolase domain protein PMID: 2215213 best DB hits: BLAST: swissprot:P45388%3B YAEJ_PSEPU HYPOTHETICAL 15.2 KD PROTEIN IN PCAJ%3B E%3D3e-16 embl:CAA63804.1%3B (X93605) hypothetical protein YAEJ [Zymomonas%3B E%3D7e-15 pir:A83538%3B conserved hypothetical protein PA0868 [imported] -%3B E%3D4e-12 COG: PA0868%3B COG1186 Protein chain release factor B%3B E%3D4e-13 sll1110%3B COG0216 Protein chain release factor A%3B E%3D0.010 PFAM: PF00472%3B Peptidyl-tRNA hydrolase domain%3B E%3D2.2e-09 gene gene7205 http://www.ncbi.nlm.nih.gov/gene/?term=RB12945 RB12946 RB12946 RB12946 6969668 6970402 + hypothetical protein best DB hits: PFAM: PF02151%3B UvrB/uvrC motif%3B E%3D0.0011 gene gene7206 http://www.ncbi.nlm.nih.gov/gene/?term=RB12946 RB12949 RB12949 RB12949 6970418 6971830 + histidine protein kinase PMID: 8757734 best DB hits: BLAST: gb:AAB38420.1%3B (L39938) histidine protein kinase [Sinorhizobium%3B E%3D2e-16 pir:E83083%3B probable two-component sensor PA4494 [imported] -%3B E%3D3e-16 gb:AAA93222.1%3B (U22925) RegB [Rhodobacter sphaeroides]%3B E%3D2e-12 COG: PA4494%3B COG0642 Sensory transduction histidine kinases%3B E%3D2e-17 PFAM: PF00512%3B His Kinase A (phosphoacceptor%3B E%3D0.011 PF02518%3B Histidine kinase-%2C DNA gyrase%3B E%3D1.2e-28 gene gene7207 http://www.ncbi.nlm.nih.gov/gene/?term=RB12949 RB12952 RB12952 RB12952 6972002 6972667 + two-component system%2C regulatory protein PMID: 7699720 best DB hits: BLAST: pir:D83083%3B probable two-component response regulator PA4493%3B E%3D8e-30 gb:AAF87208.1%3B AF228577_2 (AF228577) ActR [Rhizobium leguminosarum%3B E%3D8e-30 swissprot:Q52913%3B ACTR_RHIME ACID TOLERANCE REGULATORY PROTEIN%3B E%3D1e-29 COG: PA4493%3B COG0784 CheY-like receiver domains%3B E%3D8e-31 TP0519%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D3e-12 BH3787%3B COG0784 CheY-like receiver domains%3B E%3D8e-11 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D2.9e-25 gene gene7208 http://www.ncbi.nlm.nih.gov/gene/?term=RB12952 RB12953 RB12953 RB12953 6972882 6973667 - signal peptide gene gene7209 http://www.ncbi.nlm.nih.gov/gene/?term=RB12953 RB12959 RB12959 RB12959 6973882 6974205 - hypothetical protein gene gene7210 http://www.ncbi.nlm.nih.gov/gene/?term=RB12959 RB12961 RB12961 RB12961 6974274 6974942 - signal peptide gene gene7211 http://www.ncbi.nlm.nih.gov/gene/?term=RB12961 RB12962 RB12962 RB12962 6975006 6975179 + hypothetical protein gene gene7212 http://www.ncbi.nlm.nih.gov/gene/?term=RB12962 RB12963 RB12963 RB12963 6975121 6976236 - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN best DB hits: BLAST: swissprot:O34617%3B YLON_BACSU HYPOTHETICAL 41.6 KDA PROTEIN IN%3B E%3D1e-73 pir:B81098%3B conserved hypothetical protein NMB1308 [imported] -%3B E%3D1e-69 pir:F81843%3B conserved hypothetical protein NMA1522 [imported] -%3B E%3D2e-69 COG: BS_yloN%3B COG0820 Predicted Fe-S oxidoreductase%3B E%3D1e-74 gene gene7213 http://www.ncbi.nlm.nih.gov/gene/?term=RB12963 RB12965 RB12965 RB12965 6976376 6977047 - signal peptide gene gene7214 http://www.ncbi.nlm.nih.gov/gene/?term=RB12965 RB12968 RB12968 RB12968 6977141 6979138 + signal peptide gene gene7215 http://www.ncbi.nlm.nih.gov/gene/?term=RB12968 RB1297 RB1297 RB1297 657348 657866 + signal peptide gene gene691 http://www.ncbi.nlm.nih.gov/gene/?term=RB1297 RB12971 RB12971 RB12971 6979262 6979462 - hypothetical protein gene gene7216 http://www.ncbi.nlm.nih.gov/gene/?term=RB12971 RB12972 RB12972 RB12972 6979436 6979588 + hypothetical protein gene gene7217 http://www.ncbi.nlm.nih.gov/gene/?term=RB12972 RB12974 RB12974 RB12974 6979647 6979847 - hypothetical protein gene gene7218 http://www.ncbi.nlm.nih.gov/gene/?term=RB12974 RB12975 RB12975 RB12975 6979844 6980053 - hypothetical protein gene gene7219 http://www.ncbi.nlm.nih.gov/gene/?term=RB12975 RB12978 RB12978 RB12978 6980057 6980722 - hypothetical protein gene gene7220 http://www.ncbi.nlm.nih.gov/gene/?term=RB12978 RB12982 RB12982 RB12982 6980707 6981480 - hypothetical protein gene gene7221 http://www.ncbi.nlm.nih.gov/gene/?term=RB12982 RB12984 RB12984 RB12984 6981461 6983911 - hypothetical protein gene gene7222 http://www.ncbi.nlm.nih.gov/gene/?term=RB12984 RB12989 RB12989 RB12989 6983806 6984744 - hypothetical protein gene gene7223 http://www.ncbi.nlm.nih.gov/gene/?term=RB12989 RB1299 RB1299 RB1299 657875 658102 + hypothetical protein gene gene692 http://www.ncbi.nlm.nih.gov/gene/?term=RB1299 RB12994 RB12994 RB12994 6984741 6986603 - oxidoreductase%2C Fe-S subunit best DB hits: BLAST: gb:AAG56658.1%3B AE005390_5 (AE005390) oxidoreductase%2C Fe-S%3B E%3D2e-16 pir:G64924%3B nrfC protein homolog b1671 - Escherichia coli -----%3B E%3D4e-16 gb:AAG57820.1%3B AE005499_7 (AE005499) involved in electron%3B E%3D3e-15 COG: ydhX%3B COG0437 Fe-S-cluster-containing hydrogenase components 1%3B E%3D4e-17 hydN%3B COG1142 Fe-S-cluster-containing hydrogenase components 2%3B E%3D3e-16 AF0157%3B COG0437 Fe-S-cluster-containing hydrogenase components 1%3B E%3D8e-14 PFAM: PF00027%3B Cyclic nucleotide-binding domain%3B E%3D0.0017 PF00037%3B 4Fe-4S binding domain%3B E%3D0.31 gene gene7224 http://www.ncbi.nlm.nih.gov/gene/?term=RB12994 RB12997 RB12997 RB12997 6986566 6987102 + hypothetical protein gene gene7225 http://www.ncbi.nlm.nih.gov/gene/?term=RB12997 RB12998 RB12998 RB12998 6986660 6987166 + hypothetical protein gene gene7226 http://www.ncbi.nlm.nih.gov/gene/?term=RB12998 RB12999 RB12999 RB12999 6986738 6987157 - hypothetical protein gene gene7227 http://www.ncbi.nlm.nih.gov/gene/?term=RB12999 RB13 RB13 RB13 5458 5850 - hypothetical protein gene gene5 http://www.ncbi.nlm.nih.gov/gene/?term=RB13 RB130 RB130 RB130 56878 58119 + signal peptide gene gene72 http://www.ncbi.nlm.nih.gov/gene/?term=RB130 RB1300 RB1300 RB1300 658168 658959 + hypothetical protein gene gene693 http://www.ncbi.nlm.nih.gov/gene/?term=RB1300 RB13001 RB13001 RB13001 6987235 6987843 + hypothetical protein gene gene7228 http://www.ncbi.nlm.nih.gov/gene/?term=RB13001 RB13002 RB13002 RB13002 6987708 6988877 - glutaminyl cyclase PMID: 10731132 best DB hits: BLAST: gb:AAF50733.1%3B (AE003564) CG10487 gene product [Drosophila%3B E%3D0.003 ddbj:BAA34290.1%3B (AB014769) glutaminyl cyclase [Bothrops%3B E%3D0.005 embl:CAA50438.1%3B (X71125) glutaminyl-peptide cyclotransferase%3B E%3D0.44 gene gene7229 http://www.ncbi.nlm.nih.gov/gene/?term=RB13002 RB13004 RB13004 RB13004 6989296 6989862 + hypothetical protein gene gene7231 http://www.ncbi.nlm.nih.gov/gene/?term=RB13004 RB13005 RB13005 RB13005 6989994 6991808 + hypothetical protein PMID: 8905232 best DB hits: BLAST: swissprot:P77234%3B YBEQ_ECOLI HYPOTHETICAL 37.3 KDA PROTEIN IN%3B E%3D8e-40 gb:AAD41587.1%3B AF057704_3 (AF057704) enhanced entry protein EnhC%3B E%3D1e-37 pir:T46587%3B hypothetical protein [imported] - Vogesella indigofera%3B E%3D1e-35 COG: ybeQ%3B COG0790 TPR repeat proteins%3B E%3D7e-41 gene gene7232 http://www.ncbi.nlm.nih.gov/gene/?term=RB13005 RB13007 RB13007 RB13007 6992010 6992489 + hypothetical protein gene gene7233 http://www.ncbi.nlm.nih.gov/gene/?term=RB13007 RB1301 RB1301 RB1301 658948 659157 - hypothetical protein gene gene694 http://www.ncbi.nlm.nih.gov/gene/?term=RB1301 RB13011 RB13011 RB13011 6992499 6993194 + hypothetical protein gene gene7234 http://www.ncbi.nlm.nih.gov/gene/?term=RB13011 RB13012 RB13012 RB13012 6993210 6993407 + hypothetical protein gene gene7235 http://www.ncbi.nlm.nih.gov/gene/?term=RB13012 RB13013 RB13013 RB13013 6993313 6994083 + signal peptide gene gene7236 http://www.ncbi.nlm.nih.gov/gene/?term=RB13013 RB13015 RB13015 RB13015 6994107 6994286 - hypothetical protein gene gene7237 http://www.ncbi.nlm.nih.gov/gene/?term=RB13015 RB13016 RB13016 RB13016 6994318 6994536 - hypothetical protein gene gene7238 http://www.ncbi.nlm.nih.gov/gene/?term=RB13016 RB13017 RB13017 RB13017 6994546 6994938 + signal peptide gene gene7239 http://www.ncbi.nlm.nih.gov/gene/?term=RB13017 RB1302 RB1302 RB1302 659166 659762 + hypothetical protein gene gene695 http://www.ncbi.nlm.nih.gov/gene/?term=RB1302 RB13021 RB13021 RB13021 6995065 6995838 + receptor protein kinase PMID: 10731132 best DB hits: BLAST: gb:AAF82144.1%3B AC034256_8 (AC034256) Contains similarity to F-box%3B E%3D2e-07 gb:AAF44956.1%3B AE003406_161 (AE003416) symbol%3DBG:DS07108.4%3B E%3D1e-04 gb:AAF53475.1%3B (AE003648) BG:DS07108.4 gene product [Drosophila%3B E%3D1e-04 gene gene7240 http://www.ncbi.nlm.nih.gov/gene/?term=RB13021 RB13024 RB13024 RB13024 6995860 6996282 + hypothetical protein PMID: 8905231 best DB hits: BLAST: pir:S76466%3B hypothetical protein sll1853 - Synechocystis sp. (strain%3B E%3D6e-18 gene gene7241 http://www.ncbi.nlm.nih.gov/gene/?term=RB13024 RB13025 RB13025 RB13025 6996438 6997019 - monooxygenase PMID: 1444267 best DB hits: BLAST: pir:D83229%3B probable FAD-dependent monooxygenase PA3328 [imported] -%3B E%3D1e-07 pir:H70986%3B probable hyroxylase - Mycobacterium tuberculosis (strain%3B E%3D2e-07 pir:T35323%3B probable hydroxylase - Streptomyces coelicolor -----%3B E%3D1e-06 COG: PA3328%3B COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related%3B E%3D1e-08 BS_yetM%3B COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and%3B E%3D2e-04 PA2587%3B COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related%3B E%3D5e-04 PFAM: PF01360%3B Monooxygenase%3B E%3D2.8e-12 gene gene7242 http://www.ncbi.nlm.nih.gov/gene/?term=RB13025 RB13026 RB13026 RB13026 6997071 6997664 - monooxygenase PMID: 1444267 best DB hits: BLAST: pir:T37167%3B probable oxidoreductase - Streptomyces coelicolor%3B E%3D4e-08 gb:AAD25066.1%3B AF121000_13 (AF121000) oxidoreductase%3B E%3D0.001 pir:D83122%3B probable FAD-dependent monooxygenase PA4190 [imported] -%3B E%3D0.004 COG: PA4190%3B COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related%3B E%3D4e-04 PFAM: PF01360%3B Monooxygenase%3B E%3D0.33 gene gene7243 http://www.ncbi.nlm.nih.gov/gene/?term=RB13026 RB13028 RB13028 RB13028 6997640 6998122 + hypothetical protein best DB hits: BLAST: ddbj:BAA92043.1%3B (AK002026) unnamed protein product [Homo%3B E%3D0.87 ddbj:BAB13962.1%3B (AK022105) unnamed protein product [Homo%3B E%3D0.87 ref:XP_012653.1%3B hypothetical protein FLJ11164 [Homo sapiens]%3B E%3D0.87 gene gene7244 http://www.ncbi.nlm.nih.gov/gene/?term=RB13028 RB13029 RB13029 RB13029 6997760 6998164 - hypothetical protein gene gene7245 http://www.ncbi.nlm.nih.gov/gene/?term=RB13029 RB13030 RB13030 RB13030 6998161 6999186 - signal peptide best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.24 gene gene7246 http://www.ncbi.nlm.nih.gov/gene/?term=RB13030 RB13032 RB13032 RB13032 6999266 7000897 - permease PMID: 9384377 best DB hits: BLAST: pir:E69759%3B hypothetical protein ycgR - Bacillus subtilis -----%3B E%3D5e-06 ddbj:BAB05237.1%3B (AP001512) BH1518~~unknown conserved protein%3B E%3D2e-04 pir:H70420%3B conserved hypothetical protein aq_1388 - Aquifex%3B E%3D6e-04 COG: BS_ycgR%3B COG0701 Predicted permeases%3B E%3D4e-07 gene gene7247 http://www.ncbi.nlm.nih.gov/gene/?term=RB13032 RB13035 RB13035 RB13035 7000894 7001859 - hypothetical protein gene gene7248 http://www.ncbi.nlm.nih.gov/gene/?term=RB13035 RB13037 RB13037 RB13037 7001856 7002803 - MoxR-related protein PMID: 10567266 best DB hits: BLAST: pir:H72289%3B hypothetical protein TM1132 - Thermotoga maritima%3B E%3D2e-67 pir:B71126%3B hypothetical protein PH0776 - Pyrococcus horikoshii%3B E%3D2e-67 ddbj:BAB04323.1%3B (AP001509) methanol dehydrogenase regulatory%3B E%3D8e-67 COG: TM1132%3B COG0714 MoxR-like ATPases%3B E%3D2e-68 PFAM: PF00004%3B ATPase associated with va%3B E%3D0.00018 PF01078%3B Magnesium chelatase%2C subunit Chl%3B E%3D1.5e-09 gene gene7249 http://www.ncbi.nlm.nih.gov/gene/?term=RB13037 RB13038 RB13038 RB13038 7002800 7005061 - transglutaminase PMID: 10452618 best DB hits: BLAST: pir:D75012%3B hypothetical protein PAB1274 - Pyrococcus abyssi (strain%3B E%3D3e-04 gb:AAB91268.1%3B (AE001110) A. fulgidus predicted coding region%3B E%3D0.006 pir:F70464%3B hypothetical protein aq_1912 - Aquifex aeolicus -----%3B E%3D0.011 COG: PAB1274_1%3B COG1305 transglutaminases%2C cysteine%3B E%3D4e-04 PFAM: PF02553%3B Cobalt transport protein compo%3B E%3D0.37 PF01841%3B Transglutaminase-like superfam%3B E%3D0.00013 gene gene7250 http://www.ncbi.nlm.nih.gov/gene/?term=RB13038 RB1304 RB1304 RB1304 659778 660044 + hypothetical protein gene gene696 http://www.ncbi.nlm.nih.gov/gene/?term=RB1304 RB13042 RB13042 RB13042 7004997 7006247 - hypothetical protein best DB hits: BLAST: pir:T34965%3B probable membrane protein - Streptomyces coelicolor%3B E%3D3e-08 ddbj:BAB04451.1%3B (AP001509) BH0732~~unknown conserved protein in%3B E%3D0.002 pir:H71125%3B hypothetical protein PH0774 - Pyrococcus horikoshii%3B E%3D0.012 COG: BH0732%3B COG1721 Uncharacterized ACR%3B E%3D1e-04 PFAM: PF01882%3B Protein of unknown function DUF58%3B E%3D7.1e-10 gene gene7251 http://www.ncbi.nlm.nih.gov/gene/?term=RB13042 RB13044 RB13044 RB13044 7006299 7006790 - signal peptide gene gene7252 http://www.ncbi.nlm.nih.gov/gene/?term=RB13044 RB13048 RB13048 yfgL yfgL 7007007 7008356 + hypothetical protein best DB hits: BLAST: swissprot:P77774%3B YFGL_ECOLI HYPOTHETICAL 41.9 KD PROTEIN IN%3B E%3D0.006 gb:AAG57622.1%3B AE005480_9 (AE005480) dehydrogenase%3B E%3D0.007 gb:AAG31169.1%3B (AF314961) unknown [Salmonella typhimurium]%3B E%3D0.056 COG: yfgL%3B COG1520 Uncharacterized proteins of WD40-like repeat family%3B E%3D6e-04 gene gene7253 http://www.ncbi.nlm.nih.gov/gene/?term=RB13048 RB1305 RB1305 RB1305 660019 660810 + hypothetical protein gene gene697 http://www.ncbi.nlm.nih.gov/gene/?term=RB1305 RB13051 RB13051 RB13051 7008357 7008560 - hypothetical protein gene gene7254 http://www.ncbi.nlm.nih.gov/gene/?term=RB13051 RB13053 RB13053 RB13053 7008596 7009024 + signal peptide gene gene7255 http://www.ncbi.nlm.nih.gov/gene/?term=RB13053 RB13056 RB13056 RB13056 7009080 7009295 + hypothetical protein gene gene7256 http://www.ncbi.nlm.nih.gov/gene/?term=RB13056 RB13057 RB13057 RB13057 7009155 7009412 - hypothetical protein gene gene7257 http://www.ncbi.nlm.nih.gov/gene/?term=RB13057 RB13059 RB13059 RB13059 7009452 7009796 + signal peptide gene gene7258 http://www.ncbi.nlm.nih.gov/gene/?term=RB13059 RB13062 RB13062 RB13062 7009944 7010369 + signal peptide PMID: 11259647 gene gene7259 http://www.ncbi.nlm.nih.gov/gene/?term=RB13062 RB13063 RB13063 RB13063 7010406 7011494 + hypothetical protein gene gene7260 http://www.ncbi.nlm.nih.gov/gene/?term=RB13063 RB13066 RB13066 RB13066 7011573 7013345 + hypothetical protein gene gene7261 http://www.ncbi.nlm.nih.gov/gene/?term=RB13066 RB13068 RB13068 RB13068 7013342 7014841 + hypothetical protein best DB hits: PFAM: PF02271%3B Ubiquinol-cytochrome C reductase com%3B E%3D0.21 gene gene7262 http://www.ncbi.nlm.nih.gov/gene/?term=RB13068 RB13071 RB13071 RB13071 7014838 7016046 + chromosome partitioning ATPase PMID: 9054507 best DB hits: BLAST: pir:F83108%3B hypothetical protein PA4303 [imported] - Pseudomonas%3B E%3D2e-12 embl:CAA06604.1%3B (AJ005576) MinD protein [Streptomyces griseus]%3B E%3D2e-10 embl:CAB92599.1%3B (AL356813) septum site-determining%3B E%3D4e-10 COG: DR0013%3B COG1192 ATPases involved in chromosome partitioning%3B E%3D2e-09 BH2436%3B COG0455 ATPases involved in chromosome partitioning%3B E%3D2e-07 HP0331%3B COG2894 Septum formation inhibitor-activating ATPase%3B E%3D4e-07 PFAM: PF00142%3B 4Fe-4S iron sulfur cluster bindin%3B E%3D0.27 gene gene7263 http://www.ncbi.nlm.nih.gov/gene/?term=RB13071 RB13073 RB13073 RB13073 7016043 7017452 + secretory protein PMID: 7934814 best DB hits: BLAST: gb:AAB36933.1%3B (U77780) secretory protein kinase [Chlorobium%3B E%3D2e-98 gb:AAF40195.1%3B AF229646_7 (AF229646) CpaF [Caulobacter crescentus]%3B E%3D2e-92 gb:AAG33866.1%3B AF317389_1 (AF317389) type IV NTPase%3B E%3D4e-86 COG: PA4302%3B COG0630 Predicted ATPases involved in pili and flagella%3B E%3D2e-78 PFAM: PF01580%3B FtsK/SpoIIIE family%3B E%3D0.13 PF01443%3B Viral (Superfamily 1) RNA hel%3B E%3D0.067 PF00437%3B Bacterial type II secretion s%3B E%3D2.4e-24 gene gene7264 http://www.ncbi.nlm.nih.gov/gene/?term=RB13073 RB13074 RB13074 tadB tadB 7017449 7018342 + protein secretion system or pilus assembly related protein TadB PMID: 11029439 best DB hits: BLAST: gb:AAF40196.1%3B AF229646_8 (AF229646) TadB [Caulobacter crescentus]%3B E%3D0.005 gb:AAD38173.2%3B AF152598_2 (AF152598) TadB [Actinobacillus%3B E%3D0.41 gene gene7265 http://www.ncbi.nlm.nih.gov/gene/?term=RB13074 RB13077 RB13077 RB13077 7018654 7019574 + hypothetical protein PMID: 8843436 best DB hits: BLAST: embl:CAB92604.1%3B (AL356813) integral membrane protein%3B E%3D0.002 gene gene7266 http://www.ncbi.nlm.nih.gov/gene/?term=RB13077 RB13078 RB13078 RB13078 7019481 7019936 + hypothetical protein PMID: 11298281 best DB hits: BLAST: gb:AAF81067.1%3B AF223364_2 (AF223364) unknown [Myxococcus xanthus]%3B E%3D8e-12 embl:CAB92612.1%3B (AL356813) secreted protein%3B E%3D6e-05 swissprot:Q9UZM5%3B Y743_PYRAB HYPOTHETICAL PROTEIN PAB0743 -----%3B E%3D0.006 COG: PAB0743%3B COG1430 Uncharacterized ACR%3B E%3D6e-04 PFAM: PF02643%3B Uncharacterized ACR%2C COG1430%3B E%3D4.1e-08 gene gene7267 http://www.ncbi.nlm.nih.gov/gene/?term=RB13078 RB1308 RB1308 RB1308 660807 662321 + phytoene dehydrogenase PMID: 2263648 best DB hits: BLAST: gb:AAF63149.1%3B AC011001_19 (AC011001) Similar to phytoene%3B E%3D1e-09 swissprot:P22871%3B CRTI_ERWHE PHYTOENE DEHYDROGENASE (PHYTOENE%3B E%3D4e-05 gb:AAA64981.1%3B (M87280) phytoene dehydrogenase [Erwinia%3B E%3D4e-05 COG: BH1848%3B COG1233 Phytoene dehydrogenase and related proteins%3B E%3D6e-06 PFAM: PF01134%3B Glucose inhibited division prot%3B E%3D0.017 PF01593%3B Flavin containing amine oxidase%3B E%3D0.08 PF00732%3B GMC oxidoreductases%3B E%3D0.049 gene gene698 http://www.ncbi.nlm.nih.gov/gene/?term=RB1308 RB13080 RB13080 RB13080 7019948 7020655 + hypothetical protein PMID: 8688087 best DB hits: BLAST: swissprot:Q58492%3B YA92_METJA HYPOTHETICAL PROTEIN MJ1092 -----%3B E%3D5e-07 swissprot:P76425%3B YOHM_ECOLI HYPOTHETICAL 30.4 KDA PROTEIN IN%3B E%3D0.003 gb:AAG57167.1%3B AE005437_2 (AE005437) orf%2C hypothetical protein%3B E%3D0.019 COG: MJ1092%3B COG2215 Predicted membrane protein%3B E%3D5e-08 gene gene7268 http://www.ncbi.nlm.nih.gov/gene/?term=RB13080 RB13082 RB13082 RB13082 7020677 7020898 + hypothetical protein gene gene7269 http://www.ncbi.nlm.nih.gov/gene/?term=RB13082 RB13084 RB13084 RB13084 7020834 7021373 + hypothetical protein PMID: 9537320 best DB hits: BLAST: pir:B70403%3B hypothetical protein aq_1194 - Aquifex aeolicus -----%3B E%3D3e-05 pir:G75360%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D1e-04 pir:S74786%3B hypothetical protein slr1083 - Synechocystis sp. (strain%3B E%3D0.003 gene gene7270 http://www.ncbi.nlm.nih.gov/gene/?term=RB13084 RB13086 RB13086 RB13086 7021382 7021633 + hypothetical protein gene gene7271 http://www.ncbi.nlm.nih.gov/gene/?term=RB13086 RB13088 RB13088 RB13088 7021677 7022309 - hypothetical protein gene gene7272 http://www.ncbi.nlm.nih.gov/gene/?term=RB13088 RB13089 RB13089 RB13089 7022309 7022530 - hypothetical protein gene gene7273 http://www.ncbi.nlm.nih.gov/gene/?term=RB13089 RB13090 RB13090 RB13090 7022518 7023642 - monooxygenase PMID: 8843436 best DB hits: BLAST: embl:CAB71851.1%3B (AL138667) monooxygenase. [Streptomyces%3B E%3D0.003 gb:AAB53030.1%3B (U62055) TrkA [Bacillus subtilis]%3B E%3D0.023 pir:E69725%3B potassium uptake trkA - Bacillus subtilis -----%3B E%3D0.023 COG: BS_trkA%3B COG2072 Predicted flavoprotein involved in K+ transport%3B E%3D0.002 PFAM: PF01134%3B Glucose inhibited division prot%3B E%3D0.5 PF02254%3B KTN NAD-binding domain%3B E%3D0.066 PF02032%3B Phytoene dehydrogenase related%3B E%3D0.88 gene gene7274 http://www.ncbi.nlm.nih.gov/gene/?term=RB13090 RB13091 RB13091 RB13091 7023639 7024934 - cobalamin synthesis protein CobW PMID: 1655697 best DB hits: BLAST: pir:D82953%3B conserved hypothetical protein PA5535 [imported] -%3B E%3D1e-109 embl:CAC08207.1%3B (AJ278349) P44k protein [Rhodococcus sp. AJ270]%3B E%3D1e-101 pir:B69760%3B conserved hypothetical protein yciC - Bacillus subtilis%3B E%3D1e-98 COG: PA5535%3B COG0523 GTPases (G3E family)%3B E%3D1e-110 PFAM: PF01443%3B Viral (Superfamily 1) RNA hel%3B E%3D0.08 PF01495%3B HypB/UreG nucleotide-binding%3B E%3D0.026 PF02492%3B Cobalamin synthesis protein/P%3B E%3D9.1e-107 gene gene7275 http://www.ncbi.nlm.nih.gov/gene/?term=RB13091 RB13092 RB13092 RB13092 7025003 7025143 + hypothetical protein gene gene7276 http://www.ncbi.nlm.nih.gov/gene/?term=RB13092 RB13093 RB13093 RB13093 7025101 7025577 - signal peptide gene gene7277 http://www.ncbi.nlm.nih.gov/gene/?term=RB13093 RB13094 RB13094 RB13094 7025749 7026762 + cobalamin synthesis protein CobW PMID: 1655697 best DB hits: BLAST: swissprot:P33030%3B YEIR_ECOLI HYPOTHETICAL 36.1 KD PROTEIN IN%3B E%3D1e-47 gb:AAG57311.1%3B AE005450_1 (AE005450) orf%2C hypothetical protein%3B E%3D8e-47 ddbj:BAA15982.1%3B (D90849) ORF_ID:o369#5%3B similar to [SwissProt%3B E%3D1e-44 COG: yeiR%3B COG0523 GTPases (G3E family)%3B E%3D1e-48 PFAM: PF01443%3B Viral (Superfamily 1) RNA hel%3B E%3D0.025 PF02492%3B Cobalamin synthesis protein/P%3B E%3D2.3e-13 gene gene7278 http://www.ncbi.nlm.nih.gov/gene/?term=RB13094 RB13095 RB13095 RB13095 7026753 7027442 + hypothetical protein gene gene7279 http://www.ncbi.nlm.nih.gov/gene/?term=RB13095 RB13097 RB13097 RB13097 7026795 7027310 - signal peptide gene gene7280 http://www.ncbi.nlm.nih.gov/gene/?term=RB13097 RB13098 RB13098 RB13098 7027443 7027733 - hypothetical protein gene gene7281 http://www.ncbi.nlm.nih.gov/gene/?term=RB13098 RB13099 RB13099 fur fur 7027807 7028238 + ferric uptake regulation protein Fur PMID: 7798143 PMID: 2993806 PMID: 2823881 best DB hits: BLAST: swissprot:Q45765%3B FUR_BORPE FERRIC UPTAKE REGULATION PROTEIN%3B E%3D3e-05 swissprot:P06975%3B FUR_ECOLI FERRIC UPTAKE REGULATION PROTEIN%3B E%3D2e-04 gb:AAD01582.1%3B (AF016035) ferric uptake regulation protein%3B E%3D2e-04 COG: fur%3B COG0735 Fe2+/Zn2+ uptake regulation proteins%3B E%3D2e-05 PFAM: PF00403%3B Heavy-metal-associated domain%3B E%3D0.18 PF01475%3B Ferric uptake regulator family%3B E%3D7.4e-05 gene gene7282 http://www.ncbi.nlm.nih.gov/gene/?term=RB13099 RB1310 RB1310 RB1310 662318 663079 + ABC-type multidrug transport system%2C ATPase component PMID: 2229036 best DB hits: BLAST: pir:B72334%3B ABC transporter ATP-binding protein - Thermotoga%3B E%3D8e-34 gb:AAG19180.1%3B (AE005015) ABC transporter ATP-binding protein%3B E%3D4e-33 embl:CAC11214.1%3B (AL445063) gliding motility protein (gldA)%3B E%3D5e-33 COG: TM0793%3B COG1131 ABC-type multidrug transport system%2C ATPase%3B E%3D8e-35 ybhF%3B COG1131 ABC-type multidrug transport system%2C ATPase component%3B E%3D1e-26 PFAM: PF00448%3B SRP54-type protein%2C GTPase do%3B E%3D0.0013 PF00005%3B ABC transporter%3B E%3D6.1e-52 gene gene699 http://www.ncbi.nlm.nih.gov/gene/?term=RB1310 RB13102 RB13102 RB13102 7028321 7028581 - signal peptide gene gene7283 http://www.ncbi.nlm.nih.gov/gene/?term=RB13102 RB13104 RB13104 RB13104 7028712 7030826 + type II secretion system protein PMID: 8326859 best DB hits: BLAST: gb:AAG60826.1%3B AF322012_131 (AF322013) RhcC2 [Bradyrhizobium%3B E%3D2e-29 swissprot:P55702%3B Y4XJ_RHISN HYPOTHETICAL 44.3 KD PROTEIN Y4XJ%3B E%3D5e-29 pir:G83108%3B probable type II secretion system protein PA4304%3B E%3D2e-21 COG: PA4304%3B COG1450 General secretory pathway protein D%3B E%3D2e-22 PFAM: PF00263%3B Bacterial type II and III secretion%3B E%3D5.2e-06 gene gene7284 http://www.ncbi.nlm.nih.gov/gene/?term=RB13104 RB13106 RB13106 RB13106 7030816 7031394 + signal peptide gene gene7285 http://www.ncbi.nlm.nih.gov/gene/?term=RB13106 RB13107 RB13107 pilF pilF 7031391 7032119 + type IV fimbrial biogenesis protein PilF PMID: 97128806 best DB hits: BLAST: gb:AAA62535.1%3B (U21320) contains TPR domain-like repeats%3B E%3D2e-04 gb:AAB63465.1%3B (U77412) O-linked GlcNAc transferase%3B E%3D2e-04 pir:H83171%3B type 4 fimbrial biogenesis protein PilF PA3805%3B E%3D4e-04 COG: PA3805%3B COG0457 TPR-repeat-containing proteins%3B E%3D4e-05 gene gene7286 http://www.ncbi.nlm.nih.gov/gene/?term=RB13107 RB13109 RB13109 RB13109 7032215 7032463 - hypothetical protein gene gene7287 http://www.ncbi.nlm.nih.gov/gene/?term=RB13109 RB1311 RB1311 RB1311 663076 664746 + hypothetical protein gene gene700 http://www.ncbi.nlm.nih.gov/gene/?term=RB1311 RB13110 RB13110 apaH apaH 7032486 7033415 + diadenosine tetraphosphatase PMID: 3031429 best DB hits: BLAST: pir:C83259%3B hypothetical protein PA3087 [imported] - Pseudomonas%3B E%3D1e-54 ddbj:BAB06564.1%3B (AP001516) diadenosine tetraphosphatase%3B E%3D8e-10 embl:CAA11911.1%3B (AJ224354) protein serine-threonine phosphatase%2C%3B E%3D6e-08 COG: PA3087%3B COG0639 Diadenosine tetraphosphatase and related%3B E%3D1e-55 gene gene7288 http://www.ncbi.nlm.nih.gov/gene/?term=RB13110 RB13111 RB13111 nudH nudH 7033419 7033949 + (di)nucleoside polyphosphate hydrolase PMID: 11479323 best DB hits: BLAST: swissprot:Q46930%3B NUDH_ECOLI PROBABLE (DI)NUCLEOSIDE POLYPHOSPHATE%3B E%3D0.16 gene gene7289 http://www.ncbi.nlm.nih.gov/gene/?term=RB13111 RB13112 RB13112 RB13112 7034035 7036128 - sensory transduction histidine kinase PMID: 7984107 best DB hits: BLAST: pir:S75136%3B sensory transduction histidine kinase slr2104 -%3B E%3D1e-69 pir:S75130%3B sensory transduction histidine kinase slr2098 -%3B E%3D4e-57 pir:C82424%3B sensor histidine kinase LuxQ VCA0736 [imported] - Vibrio%3B E%3D8e-56 COG: VC1349_2%3B COG0642 Sensory transduction histidine kinases%3B E%3D8e-57 PFAM: PF00785%3B PAC motif%3B E%3D0.34 PF00512%3B His Kinase A (phosphoacceptor) d%3B E%3D8.1e-23 PF02518%3B Histidine kinase-%2C DNA gyrase B-%3B E%3D3.6e-41 gene gene7290 http://www.ncbi.nlm.nih.gov/gene/?term=RB13112 RB13114 RB13114 RB13114 7036271 7036468 - hypothetical protein gene gene7291 http://www.ncbi.nlm.nih.gov/gene/?term=RB13114 RB13115 RB13115 RB13115 7036369 7036614 - hypothetical protein gene gene7292 http://www.ncbi.nlm.nih.gov/gene/?term=RB13115 RB13116 RB13116 RB13116 7036394 7036561 + hypothetical protein gene gene7293 http://www.ncbi.nlm.nih.gov/gene/?term=RB13116 RB13117 RB13117 RB13117 7036595 7037065 + hypothetical protein best DB hits: BLAST: ddbj:BAB10342.1%3B (AB016872) contains similarity to two-component%3B E%3D0.63 gene gene7294 http://www.ncbi.nlm.nih.gov/gene/?term=RB13117 RB13118 RB13118 ntrC ntrC 7037043 7037675 + nitrogen regulation protein PMID: 2882477 best DB hits: BLAST: pir:H70558%3B hypothetical protein Rv1626 - Mycobacterium tuberculosis%3B E%3D3e-16 pir:T35758%3B probable response regulator - Streptomyces coelicolor%3B E%3D4e-15 pir:S52249%3B response regulator nasT - Azotobacter vinelandii -----%3B E%3D1e-12 COG: Rv1626%3B COG0784 CheY-like receiver domains%3B E%3D2e-17 glnG%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D3e-06 MTH447_1%3B COG0784 CheY-like receiver domains%3B E%3D2e-04 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D0.0018 gene gene7295 http://www.ncbi.nlm.nih.gov/gene/?term=RB13118 RB13120 RB13120 RB13120 7037744 7038451 - hypothetical protein gene gene7296 http://www.ncbi.nlm.nih.gov/gene/?term=RB13120 RB13122 RB13122 RB13122 7038440 7038598 + hypothetical protein gene gene7297 http://www.ncbi.nlm.nih.gov/gene/?term=RB13122 RB13124 RB13124 RB13124 7038708 7040645 - signal peptide gene gene7298 http://www.ncbi.nlm.nih.gov/gene/?term=RB13124 RB13126 RB13126 RB13126 7040642 7042150 - hypothetical protein gene gene7299 http://www.ncbi.nlm.nih.gov/gene/?term=RB13126 RB13127 RB13127 RB13127 7040747 7041253 + hypothetical protein gene gene7300 http://www.ncbi.nlm.nih.gov/gene/?term=RB13127 RB13128 RB13128 RB13128 7041425 7041940 + hypothetical protein gene gene7301 http://www.ncbi.nlm.nih.gov/gene/?term=RB13128 RB13129 RB13129 RB13129 7042044 7042292 + hypothetical protein gene gene7302 http://www.ncbi.nlm.nih.gov/gene/?term=RB13129 RB13131 RB13131 RB13131 7042434 7044236 + cysteine proteinase PMID: 9389475 best DB hits: BLAST: gb:AAB89309.1%3B (AE000969) cysteine proteinase%2C %3B E%3D0.30 PFAM: PF01839%3B FG-GAP repeat%3B E%3D0.31 gene gene7303 http://www.ncbi.nlm.nih.gov/gene/?term=RB13131 RB13132 RB13132 RB13132 7044398 7045837 - hypothetical protein gene gene7304 http://www.ncbi.nlm.nih.gov/gene/?term=RB13132 RB13137 RB13137 RB13137 7045937 7048405 - hypothetical protein gene gene7305 http://www.ncbi.nlm.nih.gov/gene/?term=RB13137 RB13139 RB13139 xylR xylR 7048625 7049875 - xylose operon regulatory protein PMID: 8041620 best DB hits: BLAST: swissprot:P45043%3B XYLR_HAEIN XYLOSE OPERON REGULATORY PROTEIN%3B E%3D3e-40 swissprot:P37390%3B XYLR_ECOLI XYLOSE OPERON REGULATORY PROTEIN%3B E%3D4e-39 ddbj:BAB03212.1%3B (AB046360) xylose operon regulatory%3B E%3D1e-34 COG: HI1106_1%3B COG1609 Transcriptional regulators%3B E%3D4e-22 HI1106_2%3B COG2207 AraC-type DNA-binding domain-containing proteins%3B E%3D8e-12 PFAM: PF00165%3B Bacterial regulatory helix-turn-heli%3B E%3D2.8e-25 gene gene7306 http://www.ncbi.nlm.nih.gov/gene/?term=RB13139 RB13140 RB13140 mmsB mmsB 7049908 7050891 + 3-hydroxyisobutyrate dehydrogenase PMID: 1339433 best DB hits: BLAST: swissprot:P44979%3B YGBJ_HAEIN HYPOTHETICAL PROTEIN HI1010 -----%3B E%3D3e-48 gb:AAK03450.1%3B (AE006174) unknown [Pasteurella multocida]%3B E%3D8e-47 gb:AAF25989.1%3B AC013354_8 (AC013354) F15H18.21 [Arabidopsis%3B E%3D6e-46 COG: HI1010%3B COG2084 3-hydroxyisobutyrate dehydrogenase and related%3B E%3D3e-49 PFAM: PF01089%3B Delta 1-pyrroline-5-carboxylate%3B E%3D0.035 PF02737%3B 3-hydroxyacyl-CoA dehydrogenase%2C%3B E%3D0.00065 PF02254%3B KTN NAD-binding domain%3B E%3D8.4e-05 gene gene7307 http://www.ncbi.nlm.nih.gov/gene/?term=RB13140 RB13142 RB13142 RB13142 7050849 7051226 - hypothetical protein gene gene7308 http://www.ncbi.nlm.nih.gov/gene/?term=RB13142 RB13143 RB13143 RB13143 7051238 7052500 - hypothetical protein gene gene7309 http://www.ncbi.nlm.nih.gov/gene/?term=RB13143 RB13146 RB13146 RB13146 7052481 7053470 - xylosidase/arabinosidase PMID: 8843436 best DB hits: BLAST: embl:CAB61805.1%3B (AL133236) hypothetical protein SCE65.17c%3B E%3D5e-41 ddbj:BAB05597.1%3B (AP001513) BH1878~~unknown conserved protein%3B E%3D0.003 gb:AAB97967.1%3B (AF040720) xylosidasearabinosidase [Selenomonas%3B E%3D0.010 gene gene7310 http://www.ncbi.nlm.nih.gov/gene/?term=RB13146 RB13147 RB13147 RB13147 7053522 7054958 - arylsulphatase A PMID: 7910580 best DB hits: BLAST: embl:CAA36398.1%3B (X52150) arylsulphatase a [Homo sapiens]%3B E%3D7e-62 gb:AAB03341.1%3B (U62317) arylsulfatase A [Homo sapiens]%3B E%3D7e-62 gb:AAF63858.1%3B (AF112242) N-acetylgalactosamine-6-sulfate%3B E%3D3e-61 COG: aslA%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D5e-31 PFAM: PF00884%3B Sulfatase%3B E%3D1.2e-107 gene gene7311 http://www.ncbi.nlm.nih.gov/gene/?term=RB13147 RB13148 RB13148 RB13148 7054968 7058006 - iduronate-sulfatase or arylsulfatase A best DB hits: BLAST: embl:CAA36398.1%3B (X52150) arylsulphatase a [Homo sapiens]%3B E%3D1e-60 gb:AAB03341.1%3B (U62317) arylsulfatase A [Homo sapiens]%3B E%3D1e-60 pdb:1E2S%3B P Chain P%2C Crystal Structure Of An Arylsulfatase A%3B E%3D1e-59 COG: ydeN%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D8e-31 PFAM: PF00814%3B Glycoprotease%3B E%3D0.2 PF00884%3B Sulfatase%3B E%3D1.6e-93 PF00884%3B Sulfatase%3B E%3D4.5e-52 gene gene7312 http://www.ncbi.nlm.nih.gov/gene/?term=RB13148 RB13150 RB13150 RB13150 7058003 7059586 - sialic-acid O-acetylesterase PMID: 8662838 best DB hits: BLAST: gb:AAB07813.1%3B (U40408) sialic-acid O-acetylesterase [Mus%3B E%3D2e-19 embl:CAA67214.1%3B (X98625) sialic acid-specific 9-O-acetylesterase%3B E%3D7e-19 gb:AAD55976.1%3B (AF156856) cytosolic sialic acid%3B E%3D9e-15 gene gene7313 http://www.ncbi.nlm.nih.gov/gene/?term=RB13150 RB13154 RB13154 RB13154 7059549 7060442 - lipase/esterase PMID: 10567266 best DB hits: BLAST: pir:B75555%3B probable lipaseesterase - Deinococcus radiodurans%3B E%3D8e-04 pir:T51415%3B Carboxylesterase-like protein - Arabidopsis thaliana%3B E%3D0.071 gb:AAF32448.1%3B (AC021640) hypothetical protein [Arabidopsis%3B E%3D0.17 PFAM: PF01738%3B Dienelactone hydrolase%3B E%3D3.9e-07 gene gene7314 http://www.ncbi.nlm.nih.gov/gene/?term=RB13154 RB13155 RB13155 RB13155 7060505 7062007 - N-acetylgalactosamine 6-sulfate sulfatase (GALNS) PMID: 8020961 best DB hits: BLAST: ddbj:BAA04535.1%3B (D17629) N-acetylgalactosamine 6-sulfate%3B E%3D2e-49 gb:AAF63858.1%3B (AF112242) N-acetylgalactosamine-6-sulfate%3B E%3D4e-49 pir:S07089%3B arylsulfatase (EC 3.1.6.1) - sea urchin (Lytechinus%3B E%3D5e-42 COG: ydeN%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D7e-33 PFAM: PF00884%3B Sulfatase%3B E%3D6.3e-54 gene gene7315 http://www.ncbi.nlm.nih.gov/gene/?term=RB13155 RB13156 RB13156 RB13156 7061904 7063085 - lipase/esterase PMID: 10567266 best DB hits: BLAST: pir:H70731%3B probable esterase - Mycobacterium tuberculosis (strain%3B E%3D4e-10 embl:CAA04934.1%3B (AJ001695) esterase [Thermotoga maritima]%3B E%3D2e-09 pir:F72287%3B esterase - Thermotoga maritima (strain MSB8) -----%3B E%3D2e-09 COG: Rv2284%3B COG0657 Acetyl esterase%3B E%3D4e-11 slr0825%3B COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases%3B E%3D8e-08 DR0821_2%3B COG0657 Acetyl esterase%3B E%3D6e-07 PFAM: PF00036%3B EF hand%3B E%3D0.59 gene gene7316 http://www.ncbi.nlm.nih.gov/gene/?term=RB13156 RB13157 RB13157 RB13157 7063121 7064665 - mucin-desulfating sulfatase PMID: 9710560 PMID: 10809675 best DB hits: BLAST: gb:AAF72520.1%3B AF248951_1 (AF248951) mucin-desulfating sulfatase%3B E%3D6e-35 gb:AAF55296.1%3B (AE003712) Sulf1 gene product [Drosophila%3B E%3D2e-28 pir:T16584%3B hypothetical protein K09C4.8 - Caenorhabditis elegans%3B E%3D3e-24 COG: yidJ%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D1e-24 BS_yqgS%3B COG1368 Phosphoglycerol transferase and related proteins%2C%3B E%3D0.007 PFAM: PF02455%3B Hexon-associated protein (IIIa)%3B E%3D0.25 PF00884%3B Sulfatase%3B E%3D8e-47 gene gene7317 http://www.ncbi.nlm.nih.gov/gene/?term=RB13157 RB1316 RB1316 RB1316 664924 665478 + signal peptide best DB hits: PFAM: PF00672%3B HAMP domain%3B E%3D0.45 gene gene701 http://www.ncbi.nlm.nih.gov/gene/?term=RB1316 RB13162 RB13162 RB13162 7064662 7067217 - thiol (cysteine) protease PMID: 8843436 best DB hits: BLAST: embl:CAB56147.1%3B (AL117669) hypothetical protein [Streptomyces%3B E%3D7e-12 embl:CAB55704.1%3B (AL117387) secreted protein%3B E%3D4e-09 embl:CAB94651.1%3B (AL359215) polysaccharide lyase.%3B E%3D1e-04 gene gene7318 http://www.ncbi.nlm.nih.gov/gene/?term=RB13162 RB13165 RB13165 xylR xylR 7067089 7068300 + xylose operon regulatory protein PMID: 8041620 best DB hits: BLAST: swissprot:P45043%3B XYLR_HAEIN XYLOSE OPERON REGULATORY PROTEIN%3B E%3D5e-38 swissprot:P37390%3B XYLR_ECOLI XYLOSE OPERON REGULATORY PROTEIN%3B E%3D8e-38 ddbj:BAB03212.1%3B (AB046360) xylose operon regulatory%3B E%3D2e-28 COG: HI1106_1%3B COG1609 Transcriptional regulators%3B E%3D1e-23 xylR_2%3B COG2207 AraC-type DNA-binding domain-containing proteins%3B E%3D4e-12 BH3692%3B COG1609 Transcriptional regulators%3B E%3D2e-05 PFAM: PF00165%3B Bacterial regulatory helix-turn-hel%3B E%3D3.1e-16 gene gene7319 http://www.ncbi.nlm.nih.gov/gene/?term=RB13165 RB13168 RB13168 RB13168 7068345 7068590 + signal peptide gene gene7320 http://www.ncbi.nlm.nih.gov/gene/?term=RB13168 RB1317 RB1317 leuA leuA 665572 667164 + alpha-isopropylmalate synthase catalyzes the formation of 2-isopropylmalate from 1-methyl-2-oxobutanoate and acetyl-CoA gene gene702 http://www.ncbi.nlm.nih.gov/gene/?term=RB1317 RB13170 RB13170 RB13170 7068587 7069753 - hypothetical protein gene gene7321 http://www.ncbi.nlm.nih.gov/gene/?term=RB13170 RB13171 RB13171 RB13171 7069775 7069906 - hypothetical protein gene gene7322 http://www.ncbi.nlm.nih.gov/gene/?term=RB13171 RB13172 RB13172 RB13172 7069962 7070198 - hypothetical protein gene gene7323 http://www.ncbi.nlm.nih.gov/gene/?term=RB13172 RB13173 RB13173 RB13173 7070226 7070609 + hypothetical protein gene gene7324 http://www.ncbi.nlm.nih.gov/gene/?term=RB13173 RB13175 RB13175 RB13175 7070719 7074087 + sensory transduction histidine kinase PMID: 2201868 best DB hits: BLAST: pir:S75136%3B sensory transduction histidine kinase slr2104 -%3B E%3D2e-67 pir:S75142%3B sensory transduction histidine kinase slr1759 -%3B E%3D2e-55 embl:CAA65047.1%3B (X95731) sensor kinase [Synechocystis%3B E%3D3e-55 COG: VC1349_2%3B COG0642 Sensory transduction histidine kinases%3B E%3D1e-50 PFAM: PF00989%3B PAS domain%3B E%3D0.011 PF00785%3B PAC motif%3B E%3D0.075 PF00989%3B PAS domain%3B E%3D0.46 gene gene7325 http://www.ncbi.nlm.nih.gov/gene/?term=RB13175 RB13180 RB13180 RB13180 7074068 7075603 + hypothetical protein PMID: 8905231 best DB hits: BLAST: pir:S76478%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D3e-41 pir:T44269%3B hypothetical protein KaiC [imported] - Synechococcus sp.%3B E%3D4e-39 pir:S76850%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D5e-35 COG: slr1942%3B COG0467 RecA-superfamily ATPases implicated in signal%3B E%3D3e-42 PFAM: PF00004%3B ATPase associated with%3B E%3D0.17 PF02223%3B Thymidylate kinase%3B E%3D0.11 PF00004%3B ATPase associated with%3B E%3D0.25 gene gene7326 http://www.ncbi.nlm.nih.gov/gene/?term=RB13180 RB13181 RB13181 RB13181 7075603 7078464 + sensory transduction histidine kinase PMID: 2201868 best DB hits: BLAST: pir:S75136%3B sensory transduction histidine kinase slr2104 -%3B E%3D8e-57 pir:E82198%3B sensor histidine kinaseresponse regulator VC1445%3B E%3D4e-49 embl:CAA37397.1%3B (X53315) arcB [Escherichia coli]%3B E%3D3e-48 COG: sll1353_2%3B COG0642 Sensory transduction histidine kinases%3B E%3D7e-43 PFAM: PF00785%3B PAC motif%3B E%3D0.1 PF00989%3B PAS domain%3B E%3D8.8e-05 PF00785%3B PAC motif%3B E%3D9.8e-08 gene gene7327 http://www.ncbi.nlm.nih.gov/gene/?term=RB13181 RB13183 RB13183 RB13183 7078476 7078718 + hypothetical protein gene gene7328 http://www.ncbi.nlm.nih.gov/gene/?term=RB13183 RB13184 RB13184 dsbD dsbD 7078691 7079314 - thiol:disulfide interchange protein PMID: 7623667 best DB hits: BLAST: pir:E83039%3B thiol:disulfide interchange protein DipZ PA4845%3B E%3D1e-06 pir:F81074%3B thiol-disulfide interchange protein dsbD homolog NMB1519%3B E%3D2e-05 pir:B81868%3B thiol-disulfide interchange protein dsbD homolog NMA1719%3B E%3D2e-05 COG: PA4845%3B COG0526 Thiol-disulfide isomerase and thioredoxins%3B E%3D1e-07 VNG1905C%3B COG1331 Highly conserved protein containing a thioredoxin%3B E%3D5e-06 MTH1745%3B COG0526 Thiol-disulfide isomerase and thioredoxins%3B E%3D6e-06 PFAM: PF00085%3B Thioredoxin%3B E%3D0.1 gene gene7329 http://www.ncbi.nlm.nih.gov/gene/?term=RB13184 RB13185 RB13185 RB13185 7079332 7079589 + hypothetical protein gene gene7330 http://www.ncbi.nlm.nih.gov/gene/?term=RB13185 RB13186 RB13186 RB13186 7079642 7081960 - subtilisin proteinase-like protein PMID: 11544236 best DB hits: BLAST: gb:AAK02042.1%3B AF261825_11 (AF261825) hypothetical protein%3B E%3D1e-119 swissprot:P55381%3B Y4BN_RHISN HYPOTHETICAL 47.6 KD PROTEIN Y4BN%3B E%3D0.011 swissprot:P28842%3B SUBT_BACS9 SUBTILISIN PRECURSOR ----- pir:%3B E%3D0.14 gene gene7331 http://www.ncbi.nlm.nih.gov/gene/?term=RB13186 RB13189 RB13189 RB13189 7081765 7083066 + transposase PMID: 9043130 best DB hits: BLAST: gb:AAD45539.1%3B U70376_1 (U70376) InsA [Streptomyces netropsis]%3B E%3D5e-33 gb:AAG60893.1%3B AF322013_12 (AF322013) ID460 [Bradyrhizobium%3B E%3D8e-33 ddbj:BAA19966.1%3B (D63923) transposase [Acetobacter pasteurianus]%3B E%3D1e-26 gene gene7332 http://www.ncbi.nlm.nih.gov/gene/?term=RB13189 RB1319 RB1319 valS valS 667248 670370 + valyl-tRNA synthetase PMID: 3275660 best DB hits: BLAST: swissprot:Q55522%3B SYV_SYNY3 VALYL-TRNA SYNTHETASE (VALINE--TRNA%3B E%3D0.0 swissprot:Q05873%3B SYV_BACSU VALYL-TRNA SYNTHETASE (VALINE--TRNA%3B E%3D0.0 pir:SYBSVS%3B valine--tRNA ligase (EC 6.1.1.9) - Bacillus%3B E%3D0.0 COG: slr0557%3B COG0525 Valyl-tRNA synthetase%3B E%3D0.0 PFAM: PF00133%3B tRNA synthetases class I (I%2C L%2C M%3B E%3D5.3e-75 gene gene703 http://www.ncbi.nlm.nih.gov/gene/?term=RB1319 RB13190 RB13190 RB13190 7083077 7083229 + hypothetical protein gene gene7333 http://www.ncbi.nlm.nih.gov/gene/?term=RB13190 RB13191 RB13191 RB13191 7083226 7083663 - hypothetical protein gene gene7334 http://www.ncbi.nlm.nih.gov/gene/?term=RB13191 RB13193 RB13193 RB13193 7083676 7084662 - ATPase AAA PMID: 9927482 best DB hits: BLAST: gb:AAK02043.1%3B AF261825_12 (AF261825) ATPase [Salmonella%3B E%3D1e-73 swissprot:P55530%3B Y4KL_RHISN HYPOTHETICAL 37.6 KD AAA-FAMILY%3B E%3D4e-40 gb:AAA64864.1%3B (U23723) orf300 [Escherichia coli]%3B E%3D2e-25 COG: AF0477%3B COG0464 ATPases of the AAA+ class%3B E%3D1e-22 AF1285%3B COG1223 Predicted ATPases of the AAA+ class%3B E%3D9e-20 HP1069%3B COG0465 ATP-dependent Zn proteases%3B E%3D8e-19 PFAM: PF00406%3B Adenylate kinase%3B E%3D0.57 PF00071%3B Ras family%3B E%3D0.09 PF01202%3B Shikimate kinase%3B E%3D0.028 gene gene7335 http://www.ncbi.nlm.nih.gov/gene/?term=RB13193 RB13194 RB13194 RB13194 7084723 7084920 + hypothetical protein gene gene7336 http://www.ncbi.nlm.nih.gov/gene/?term=RB13194 RB13198 RB13198 RB13198 7084995 7085369 + hypothetical protein gene gene7337 http://www.ncbi.nlm.nih.gov/gene/?term=RB13198 RB132 RB132 RB132 58394 58615 - hypothetical protein gene gene73 http://www.ncbi.nlm.nih.gov/gene/?term=RB132 RB13201 RB13201 RB13201 7085419 7085784 - hypothetical protein gene gene7338 http://www.ncbi.nlm.nih.gov/gene/?term=RB13201 RB13202 RB13202 RB13202 7086052 7086189 - hypothetical protein gene gene7339 http://www.ncbi.nlm.nih.gov/gene/?term=RB13202 RB13205 RB13205 RB13205 7086337 7086564 - hypothetical protein gene gene7340 http://www.ncbi.nlm.nih.gov/gene/?term=RB13205 RB13207 RB13207 RB13207 7086585 7086761 - signal peptide gene gene7341 http://www.ncbi.nlm.nih.gov/gene/?term=RB13207 RB13209 RB13209 RB13209 7087064 7087501 - transmembrane protein- transporter best DB hits: BLAST: swissprot:P29939%3B YCB6_PSEDE HYPOTHETICAL 15.0 KD PROTEIN IN COBO%3B E%3D4e-15 pir:H81035%3B conserved hypothetical protein NMB1840 [imported] -%3B E%3D7e-14 pir:D81981%3B probable integral membrane protein NMA0616 [imported] -%3B E%3D2e-13 COG: NMB1840%3B COG2510 Predicted membrane protein%3B E%3D7e-15 PFAM: PF00892%3B Integral membrane protein DUF6%3B E%3D5.4e-17 gene gene7342 http://www.ncbi.nlm.nih.gov/gene/?term=RB13209 RB1321 RB1321 RB1321 670478 671455 + transcription repressor PMID: 7952186 best DB hits: BLAST: pir:T35673%3B probable transcription repressor - Streptomyces%3B E%3D2e-13 ddbj:BAB04813.1%3B (AP001510) transcriptional repressor of the%3B E%3D1e-12 ddbj:BAB04516.1%3B (AP001509) glucose kinase [Bacillus halodurans]%3B E%3D5e-11 COG: BH1094%3B COG1940 Transcriptional regulators%3B E%3D1e-13 PFAM: PF00370%3B FGGY family of carbohydrate kinases%2C%3B E%3D0.8 PF00480%3B ROK family%3B E%3D3.6e-25 gene gene704 http://www.ncbi.nlm.nih.gov/gene/?term=RB1321 RB13210 RB13210 RB13210 7087573 7087710 - hypothetical protein gene gene7343 http://www.ncbi.nlm.nih.gov/gene/?term=RB13210 RB13211 RB13211 RB13211 7087707 7090199 - dolichol-phosphate mannosyltransferase- membrane bound sugar transferase involved in LPS biosynthesis best DB hits: BLAST: pir:S77201%3B hypothetical protein slr1820 - Synechocystis sp. (strain%3B E%3D7e-27 gb:AAG57388.1%3B AE005458_5 (AE005458) orf%2C hypothetical protein%3B E%3D3e-26 pir:G64996%3B hypothetical protein b2257 - Escherichia coli (strain%3B E%3D3e-26 COG: slr1820%3B COG1807 Uncharacterized protein%2C affecting LPS biosynthesis%3B E%3D7e-28 aq_1899%3B COG0463 Glycosyltransferases involved in cell wall%3B E%3D8e-27 PA3556%3B COG1807 Uncharacterized protein%2C affecting LPS biosynthesis%3B E%3D1e-22 PFAM: PF00535%3B Glycosyl transferase%3B E%3D7.2e-32 PF02366%3B Dolichyl-phosphate-mannose-pr%3B E%3D1e-13 gene gene7344 http://www.ncbi.nlm.nih.gov/gene/?term=RB13211 RB13214 RB13214 RB13214 7090176 7090286 + hypothetical protein gene gene7345 http://www.ncbi.nlm.nih.gov/gene/?term=RB13214 RB13215 RB13215 RB13215 7090395 7091498 - hypothetical protein gene gene7346 http://www.ncbi.nlm.nih.gov/gene/?term=RB13215 RB13217 RB13217 RB13217 7091498 7091881 - beta-lactamase repressor PMID: 1444307 best DB hits: BLAST: embl:CAC16667.1%3B (AJ302698) beta-lactamase repressor%3B E%3D2e-06 swissprot:P18415%3B BLAI_STAAU PENICILLINASE REPRESSOR (REGULATORY%3B E%3D7e-06 swissprot:P06555%3B BLAI_BACLI PENICILLINASE REPRESSOR (REGULATORY%3B E%3D8e-06 gene gene7347 http://www.ncbi.nlm.nih.gov/gene/?term=RB13217 RB1322 RB1322 RB1322 671526 671633 + hypothetical protein gene gene705 http://www.ncbi.nlm.nih.gov/gene/?term=RB1322 RB13220 RB13220 RB13220 7091973 7092785 - signal peptide gene gene7348 http://www.ncbi.nlm.nih.gov/gene/?term=RB13220 RB13221 RB13221 RB13221 7093018 7093986 + signal peptide best DB hits: PFAM: PF01569%3B PAP2 superfamily%3B E%3D0.00049 gene gene7349 http://www.ncbi.nlm.nih.gov/gene/?term=RB13221 RB13222 RB13222 RB13222 7094088 7094714 - hypothetical protein best DB hits: BLAST: pir:B69020%3B hypothetical protein MTH115 - Methanobacterium%3B E%3D8e-16 ddbj:BAA96146.1%3B (AP002092) ESTs%3B E%3D4e-10 gb:AAD32774.1%3B AC007661_11 (AC007661) unknown protein [Arabidopsis%3B E%3D9e-09 gene gene7350 http://www.ncbi.nlm.nih.gov/gene/?term=RB13222 RB13224 RB13224 RB13224 7094813 7096270 - oxidoreductase- NAD-dependent nucleoside-diphosphate-sugar epimerase best DB hits: BLAST: pir:T36454%3B probable oxidoreductase - Streptomyces coelicolor%3B E%3D1e-110 pir:T51117%3B hypothetical protein [imported] - Brevibacterium linens%3B E%3D4e-66 gb:AAG55251.1%3B AE005268_4 (AE005268) dTDP-glucose enzyme%3B E%3D2e-55 COG: VC1632%3B COG0702 Predicted nucleoside-diphosphate-sugar epimerases%3B E%3D2e-56 PH0378%3B COG0451 Nucleoside-diphosphate-sugar epimerases%3B E%3D4e-05 slr0317%3B COG0702 Predicted nucleoside-diphosphate-sugar epimerases%3B E%3D8e-05 PFAM: PF02716%3B Isoflavone reductase%3B E%3D0.16 PF01118%3B Semialdehyde dehydrogenase%2C N%3B E%3D0.012 PF01370%3B NAD dependent epimerase/dehyd%3B E%3D0.043 gene gene7351 http://www.ncbi.nlm.nih.gov/gene/?term=RB13224 RB13225 RB13225 recQ recQ 7096300 7097982 + ATP-dependent DNA helicase RecQ PMID: 3027506 PMID: 2164680 best DB hits: BLAST: pir:E82351%3B ATP-dependent DNA helicase RecQ VC0196 [imported] -%3B E%3D1e-68 swissprot:P50729%3B RECQ_BACSU ATP-DEPENDENT DNA HELICASE RECQ%3B E%3D4e-65 gb:AAA24517.1%3B (M30198) recQ [Escherichia coli]%3B E%3D7e-65 COG: VC0196%3B COG0514 Superfamily II DNA helicase%3B E%3D1e-69 YNL112w%3B COG0513 Superfamily II DNA and RNA helicases%3B E%3D3e-13 PFAM: PF00270%3B DEAD/DEAH box helicase%3B E%3D1.2e-39 PF00271%3B Helicase conserved C-terminal doma%3B E%3D2e-23 gene gene7352 http://www.ncbi.nlm.nih.gov/gene/?term=RB13225 RB13228 RB13228 RB13228 7097952 7098302 + hypothetical protein gene gene7353 http://www.ncbi.nlm.nih.gov/gene/?term=RB13228 RB1323 RB1323 RB1323 671656 672945 - MFS family transporter PMID: 9529885 best DB hits: BLAST: pir:A83308%3B probable MFS transporter PA2701 [imported] - Pseudomonas%3B E%3D1e-60 pir:T50939%3B DitE protein [imported] - Pseudomonas abietaniphila%3B E%3D4e-46 pir:H83212%3B conserved hypothetical protein PA3465 [imported] -%3B E%3D1e-42 COG: PA2701%3B COG0477 Permeases of the major facilitator superfamily%3B E%3D1e-61 gene gene706 http://www.ncbi.nlm.nih.gov/gene/?term=RB1323 RB13230 RB13230 RB13230 7098284 7098475 + hypothetical protein gene gene7354 http://www.ncbi.nlm.nih.gov/gene/?term=RB13230 RB13231 RB13231 RB13231 7098472 7099530 + hypothetical protein best DB hits: BLAST: embl:CAA72209.1%3B (Y11405) replicase-associated protein%3B E%3D0.65 embl:CAB44020.1%3B (AJ132180) Rep protein [faba bean necrotic%3B E%3D0.65 ddbj:BAA97561.1%3B (AB027511) replication initiator protein [milk%3B E%3D0.79 gene gene7355 http://www.ncbi.nlm.nih.gov/gene/?term=RB13231 RB13234 RB13234 RB13234 7099626 7099841 - hypothetical protein gene gene7356 http://www.ncbi.nlm.nih.gov/gene/?term=RB13234 RB13235 RB13235 RB13235 7099815 7100237 + hypothetical protein gene gene7357 http://www.ncbi.nlm.nih.gov/gene/?term=RB13235 RB13237 RB13237 RB13237 7100241 7101407 + hypothetical protein best DB hits: BLAST: pir:E82493%3B conserved hypothetical protein VCA0172 [imported] -%3B E%3D3e-04 pir:B83262%3B hypothetical protein PA3073 [imported] - Pseudomonas%3B E%3D0.003 pir:T32949%3B hypothetical protein C05G6.3 - Caenorhabditis elegans%3B E%3D0.51 COG: VCA0172%3B COG3035 Uncharacterized BCR%3B E%3D3e-05 PFAM: PF00092%3B von Willebrand factor type A domain%3B E%3D2.6e-08 gene gene7358 http://www.ncbi.nlm.nih.gov/gene/?term=RB13237 RB13238 RB13238 RB13238 7101410 7101904 + hypothetical protein PMID: 9573173 gene gene7359 http://www.ncbi.nlm.nih.gov/gene/?term=RB13238 RB13239 RB13239 RB13239 7101981 7102571 - hypothetical protein gene gene7360 http://www.ncbi.nlm.nih.gov/gene/?term=RB13239 RB1324 RB1324 RB1324 672936 673169 - hypothetical protein gene gene707 http://www.ncbi.nlm.nih.gov/gene/?term=RB1324 RB13241 RB13241 RB13241 7102561 7103064 - ECF family RNA polymerase sigma factor best DB hits: BLAST: embl:CAC01348.1%3B (AL390975) ECF-subfamily sigma factor%3B E%3D2e-06 pir:H70507%3B probable sigE protein - Mycobacterium tuberculosis%3B E%3D7e-06 gb:AAC45221.1%3B (U87307) extracytoplasmic function alternative%3B E%3D7e-06 COG: Rv1221%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D7e-07 PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D1e-09 gene gene7361 http://www.ncbi.nlm.nih.gov/gene/?term=RB13241 RB13244 RB13244 RB13244 7103061 7103330 - hypothetical protein gene gene7362 http://www.ncbi.nlm.nih.gov/gene/?term=RB13244 RB13245 RB13245 RB13245 7103413 7103583 - hypothetical protein gene gene7363 http://www.ncbi.nlm.nih.gov/gene/?term=RB13245 RB13247 RB13247 RB13247 7103620 7104177 - hypothetical protein gene gene7364 http://www.ncbi.nlm.nih.gov/gene/?term=RB13247 RB1325 RB1325 RB1325 673181 674032 + multidrug ABC transporter ATPase PMID: 2229036 best DB hits: BLAST: pir:S76626%3B ABC-type transport protein sll0489 - Synechocystis sp.%3B E%3D2e-36 gb:AAK06094.1%3B AE006429_12 (AE006429) ABC transporter ATP binding%3B E%3D8e-33 gb:AAG19180.1%3B (AE005015) ABC transporter ATP-binding protein%3B E%3D1e-32 COG: sll0489%3B COG1131 ABC-type multidrug transport system%2C ATPase%3B E%3D2e-37 PFAM: PF00448%3B SRP54-type protein%2C GTPase domai%3B E%3D0.041 PF00693%3B Thymidine kinase from herpesviru%3B E%3D0.88 PF01078%3B Magnesium chelatase%2C subunit Chl%3B E%3D0.8 gene gene708 http://www.ncbi.nlm.nih.gov/gene/?term=RB1325 RB13250 RB13250 RB13250 7104107 7104463 - hypothetical protein gene gene7365 http://www.ncbi.nlm.nih.gov/gene/?term=RB13250 RB13251 RB13251 RB13251 7104552 7104746 + hypothetical protein gene gene7366 http://www.ncbi.nlm.nih.gov/gene/?term=RB13251 RB13253 RB13253 RB13253 7104865 7105479 + TetR family transcriptional regulator best DB hits: BLAST: embl:CAB69777.1%3B (AL137187) tetR-family transcriptional%3B E%3D3e-10 gb:AAD54003.1%3B AF088856_2 (AF088856) hypothetical protein%3B E%3D3e-07 embl:CAB95981.1%3B (AL360034) tetR-family regulatory%3B E%3D4e-07 COG: PA2931%3B COG1309 Transcriptional regulator%3B E%3D1e-05 PFAM: PF00440%3B Bacterial regulatory proteins%2C tetR%3B E%3D0.63 gene gene7367 http://www.ncbi.nlm.nih.gov/gene/?term=RB13253 RB13257 RB13257 RB13257 7105590 7106450 + oxidoreductase- hydrolase involved in aromatic ring cleavage best DB hits: BLAST: embl:CAB59583.1%3B (AL132662) possible oxidoreductase [Streptomyces%3B E%3D3e-23 swissprot:Q50600%3B YJ33_MYCTU HYPOTHETICAL 32.2 KDA PROTEIN RV1833C%3B E%3D1e-22 gb:AAD02150.1%3B (AF039534) hydroxymuconic semialdehyde hydrolase%3B E%3D2e-19 COG: Rv1833c%3B COG0596 Predicted hydrolases or acyltransferases%3B E%3D1e-23 BH2279%3B COG0596 Predicted hydrolases or acyltransferases (alpha/beta%3B E%3D1e-18 BS_yugF%3B COG0596 Predicted hydrolases or acyltransferases%3B E%3D2e-18 PFAM: PF00561%3B alpha/beta hydrolase fold%3B E%3D4.1e-35 gene gene7368 http://www.ncbi.nlm.nih.gov/gene/?term=RB13257 RB13259 RB13259 RB13259 7106461 7108365 - hypothetical protein best DB hits: BLAST: pir:A72314%3B hypothetical protein TM0950 - Thermotoga maritima%3B E%3D3e-16 gene gene7369 http://www.ncbi.nlm.nih.gov/gene/?term=RB13259 RB1326 RB1326 RB1326 674029 675825 + hypothetical protein gene gene709 http://www.ncbi.nlm.nih.gov/gene/?term=RB1326 RB13260 RB13260 yhdH yhdH 7108384 7109364 + zinc-binding alcohol dehydrogenase best DB hits: BLAST: swissprot:P26646%3B YHDH_ECOLI PROTEIN YHDH ----- pir: JS0688%3B E%3D4e-86 gb:AAG58380.1%3B AE005553_2 (AE005553) dehydrogenase%3B E%3D5e-86 pir:D82374%3B zinc-binding alcohol dehydrogenase VC0026 [imported] -%3B E%3D1e-76 COG: yhdH%3B COG0604 NADPH:quinone reductase and related Zn-dependent%3B E%3D4e-87 BH0538%3B COG1064 Zn-dependent alcohol dehydrogenases%3B E%3D0.001 PA0863%3B COG0604 NADPH:quinone reductase and related Zn-dependent%3B E%3D0.003 PFAM: PF00107%3B Zinc-binding dehydrogenases%3B E%3D2.3e-38 gene gene7370 http://www.ncbi.nlm.nih.gov/gene/?term=RB13260 RB13261 RB13261 RB13261 7109512 7110501 - glutamyl-tRNA synthetase-related protein PMID: 3015933 PMID: 2201777 best DB hits: BLAST: pir:E75366%3B glutamyl-tRNA synthetase-related protein - Deinococcus%3B E%3D2e-41 swissprot:O67271%3B SYE_AQUAE GLUTAMYL-TRNA SYNTHETASE%3B E%3D2e-39 gb:AAF49463.1%3B (AE003527) CG4573 gene product [Drosophila%3B E%3D2e-37 COG: DR1687%3B COG0008 Glutamyl- and glutaminyl-tRNA synthetases%3B E%3D2e-42 PFAM: PF00749%3B tRNA synthetases class I (E and%3B E%3D2.4e-11 gene gene7371 http://www.ncbi.nlm.nih.gov/gene/?term=RB13261 RB13263 RB13263 asnC asnC 7110498 7111886 - asparaginyl-tRNA synthetase catalyzes a two-step reaction%2C first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA gene gene7372 http://www.ncbi.nlm.nih.gov/gene/?term=RB13263 RB13264 RB13264 acs acs 7112044 7114059 + acetyl-coenzyme A synthetase PMID: 7751300 best DB hits: BLAST: swissprot:Q55404%3B ACSA_SYNY3 ACETYL-COENZYME A SYNTHETASE%3B E%3D0.0 pir:D75270%3B acetyl-CoA synthase - Deinococcus radiodurans (strain%3B E%3D0.0 swissprot:P27550%3B ACSA_ECOLI ACETYL-COENZYME A SYNTHETASE%3B E%3D0.0 COG: sll0542%3B COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid%3B E%3D0.0 DR2471%3B COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases%3B E%3D0.0 AF2389-N%3B COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid%3B E%3D1e-172 PFAM: PF00501%3B AMP-binding enzyme%3B E%3D3.1e-126 gene gene7373 http://www.ncbi.nlm.nih.gov/gene/?term=RB13264 RB13265 RB13265 pknB pknB 7114095 7116446 + serine/threonine-protein kinase pknB best DB hits: BLAST: swissprot:P71584%3B PKNB_MYCTU SERINETHREONINE-PROTEIN%3B E%3D3e-40 pir:H69878%3B probable protein kinase (EC 2.7.1.-) yloP - Bacillus%3B E%3D9e-38 swissprot:P54744%3B PKNB_MYCLE SERINETHREONINE-PROTEIN%3B E%3D2e-37 COG: Rv0014c_1%3B COG0515 Serine/threonine protein kinases%3B E%3D3e-41 PFAM: PF00069%3B Protein kinase domain%3B E%3D2e-47 gene gene7374 http://www.ncbi.nlm.nih.gov/gene/?term=RB13265 RB13267 RB13267 RB13267 7116578 7117297 - hypothetical protein gene gene7375 http://www.ncbi.nlm.nih.gov/gene/?term=RB13267 RB13271 RB13271 ddlA ddlA 7117533 7118558 - D-alanine-D-alanine ligase PMID: 8125347 best DB hits: BLAST: swissprot:P55650%3B Y4SG_RHISN HYPOTHETICAL 37.0 KD PROTEIN Y4SG%3B E%3D1e-17 swissprot:O66806%3B DDL_AQUAE D-ALANINE--D-ALANINE LIGASE%3B E%3D1e-10 swissprot:P44405%3B DDL_HAEIN D-ALANINE--D-ALANINE LIGASE%3B E%3D3e-10 COG: aq_521%3B COG1181 D-alanine-D-alanine ligase and related ATP-grasp%3B E%3D1e-11 PFAM: PF01820%3B D-ala D-ala ligase%3B E%3D7.8e-06 gene gene7376 http://www.ncbi.nlm.nih.gov/gene/?term=RB13271 RB13273 RB13273 RB13273 7118616 7119677 - hypothetical protein gene gene7377 http://www.ncbi.nlm.nih.gov/gene/?term=RB13273 RB13278 RB13278 RB13278 7119809 7120528 - hypothetical protein gene gene7378 http://www.ncbi.nlm.nih.gov/gene/?term=RB13278 RB13281 RB13281 RB13281 7120587 7122128 - signal peptide gene gene7379 http://www.ncbi.nlm.nih.gov/gene/?term=RB13281 RB13283 RB13283 RB13283 7122041 7122232 - hypothetical protein gene gene7380 http://www.ncbi.nlm.nih.gov/gene/?term=RB13283 RB13286 RB13286 RB13286 7122359 7123975 + hypothetical protein gene gene7381 http://www.ncbi.nlm.nih.gov/gene/?term=RB13286 RB1329 RB1329 RB1329 675932 677347 - polysaccharide export protein PMID: 8759852 best DB hits: BLAST: gb:AAC77833.1%3B (U38473) outer membrane lipoprotein%3B E%3D2e-07 gb:AAG24804.1%3B (AF285085) outer membrane lipoprotein%3B E%3D4e-07 swissprot:P76388%3B WZA_ECOLI POLYSACCHARIDE EXPORT PROTEIN%3B E%3D5e-07 COG: wza%3B COG1596 Periplasmic protein involved in polysaccharide export%3B E%3D5e-08 aq_505%3B COG1596 Periplasmic protein involved in polysaccharide%3B E%3D5e-06 gene gene710 http://www.ncbi.nlm.nih.gov/gene/?term=RB1329 RB13290 RB13290 RB13290 7123968 7124615 + hypothetical protein gene gene7382 http://www.ncbi.nlm.nih.gov/gene/?term=RB13290 RB13291 RB13291 outD outD 7124664 7127132 + general secretion pathway protein D PMID: 8326859 best DB hits: BLAST: pir:S32858%3B outD protein - Erwinia carotovora ----- embl:%3B E%3D2e-25 swissprot:P31701%3B GSPD_ERWCA GENERAL SECRETION PATHWAY PROTEIN D%3B E%3D2e-25 gb:AAA58785.1%3B (L33796) EpsD [Vibrio cholerae]%3B E%3D1e-22 COG: hofQ%3B COG1450 General secretory pathway protein D%3B E%3D4e-23 PFAM: PF00263%3B Bacterial type II and III secretion%3B E%3D1e-45 gene gene7383 http://www.ncbi.nlm.nih.gov/gene/?term=RB13291 RB13294 RB13294 RB13294 7127129 7127677 + hypothetical protein gene gene7384 http://www.ncbi.nlm.nih.gov/gene/?term=RB13294 RB13297 RB13297 RB13297 7128034 7128630 + signal peptide gene gene7385 http://www.ncbi.nlm.nih.gov/gene/?term=RB13297 RB13298 RB13298 dur3 dur3 7128627 7130075 + urea transporter or sodium transporter PMID: 8335627 best DB hits: BLAST: gb:AAB65069.1%3B (U11582) No definition line found [Saccharomyces%3B E%3D6e-16 gb:AAA34582.1%3B (L19875) Dur3 [Saccharomyces cerevisiae]%3B E%3D1e-15 ddbj:BAB09166.1%3B (AB018113) urea active transporter-like protein%3B E%3D3e-11 COG: YHL016c%3B COG0591 Na+/proline%2C Na+/panthothenate symporters and%3B E%3D6e-17 PFAM: PF00474%3B Sodium:solute symporter family%3B E%3D1.4e-07 gene gene7386 http://www.ncbi.nlm.nih.gov/gene/?term=RB13298 RB133 RB133 RB133 58617 59468 - metalloprotease PMID: 10984043 best DB hits: BLAST: pir:G83056%3B conserved hypothetical protein PA4717 [imported] -%3B E%3D1e-59 pir:B65023%3B hypothetical protein b2475 - Escherichia coli (strain%3B E%3D4e-59 gb:AAK04057.1%3B (AE006233) unknown [Pasteurella multocida]%3B E%3D8e-57 COG: PA4717%3B COG2321 Predicted metalloprotease%3B E%3D1e-60 gene gene74 http://www.ncbi.nlm.nih.gov/gene/?term=RB133 RB13300 RB13300 RB13300 7130061 7130249 - hypothetical protein gene gene7387 http://www.ncbi.nlm.nih.gov/gene/?term=RB13300 RB13301 RB13301 pyrB pyrB 7130204 7131286 + aspartate carbamoyltransferase PMID: 6364131 PMID: 6302686 PMID: 6341995 PMID: 10318893 PMID: 2271529 best DB hits: BLAST: gb:AAB91125.1%3B (AE001099) aspartate carbamoyltransferase%2C%3B E%3D3e-31 swissprot:P96174%3B PYRB_VIBS2 ASPARTATE CARBAMOYLTRANSFERASE%3B E%3D7e-30 embl:CAC11715.1%3B (AL445064) probable aspartate%3B E%3D2e-29 COG: AF0106%3B COG0540 Aspartate carbamoyltransferase%2C catalytic chain%3B E%3D2e-32 AF1255%3B COG0078 Ornithine carbamoyltransferase%3B E%3D2e-10 PFAM: PF02729%3B Aspartate/ornithine carbamoyltransfe%3B E%3D3.6e-20 PF00185%3B Aspartate/ornithine carbamoyltransfe%3B E%3D3e-07 gene gene7388 http://www.ncbi.nlm.nih.gov/gene/?term=RB13301 RB13303 RB13303 asnB asnB 7131355 7133274 + asparagine synthetase PMID: 10498721 best DB hits: BLAST: gb:AAG02363.1%3B AF210249_22 (AF210249) asparagine synthetase%3B E%3D1e-57 swissprot:P54420%3B ASNB_BACSU ASPARAGINE SYNTHETASE%3B E%3D3e-50 ddbj:BAB05227.1%3B (AP001512) asparagine synthetase [Bacillus%3B E%3D4e-49 COG: BS_asnB%3B COG0367 Asparagine synthase (glutamine-hydrolyzing)%3B E%3D2e-51 PFAM: PF00310%3B Glutamine amidotransferases clas%3B E%3D4.1e-15 PF00733%3B Asparagine synthase%3B E%3D1.6e-13 gene gene7389 http://www.ncbi.nlm.nih.gov/gene/?term=RB13303 RB13304 RB13304 amaB amaB 7133154 7134518 + allantoate amidohydrolase allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar%3B the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia%3B carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids%2C ammonia%2C and carbon dioxide gene gene7390 http://www.ncbi.nlm.nih.gov/gene/?term=RB13304 RB13306 RB13306 RB13306 7134537 7135280 + N-carbamoylsarcosine amidase related protein- amidase best DB hits: BLAST: pir:G82957%3B hypothetical protein PA5507 [imported] - Pseudomonas%3B E%3D8e-34 embl:CAC12181.1%3B (AL445066) N-carbamoylsarcosine amidase related%3B E%3D2e-10 embl:CAC11866.1%3B (AL445065) conserved hypothetical protein%3B E%3D4e-09 COG: PA5507%3B COG1335 Amidases related to nicotinamidase%3B E%3D7e-35 TM0133%3B COG1535 2%2C3-Dihydro-2%2C3 dihydroxybenzoate synthase%3B E%3D0.001 aq_994%3B COG1335 Amidases related to nicotinamidase%3B E%3D0.003 PFAM: PF00857%3B Isochorismatase%3B E%3D3e-15 gene gene7391 http://www.ncbi.nlm.nih.gov/gene/?term=RB13306 RB13309 RB13309 RB13309 7135460 7136875 + c-type cytochrome precursor PMID: 8063110 PMID: 8195067 PMID: 11372197 best DB hits: BLAST: gb:AAD05531.1%3B (AF083240) c-type cytochrome precursor [Shewanella%3B E%3D5e-07 gb:AAD05534.1%3B (AF083240) deca-heme c-type cytochrome [Shewanella%3B E%3D4e-06 swissprot:Q57142%3B C554_NITEU CYTOCHROME C-554 PRECURSOR (C554)%3B E%3D3e-04 gene gene7392 http://www.ncbi.nlm.nih.gov/gene/?term=RB13309 RB1331 RB1331 RB1331 677271 679124 - transmembrane protein best DB hits: BLAST: embl:CAB96707.1%3B (AL360354) vir18%2C transmembrane%3B E%3D0.059 gene gene711 http://www.ncbi.nlm.nih.gov/gene/?term=RB1331 RB13311 RB13311 RB13311 7137091 7137201 + hypothetical protein gene gene7393 http://www.ncbi.nlm.nih.gov/gene/?term=RB13311 RB13312 RB13312 RB13312 7137173 7138438 - hypothetical protein best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene7394 http://www.ncbi.nlm.nih.gov/gene/?term=RB13312 RB13316 RB13316 RB13316 7138623 7138898 - signal peptide gene gene7395 http://www.ncbi.nlm.nih.gov/gene/?term=RB13316 RB13317 RB13317 RB13317 7138905 7140134 - hypothetical protein best DB hits: BLAST: pir:S76130%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D0.002 PFAM: PF00981%3B Rotavirus RNA-binding Protein 53 (N%3B E%3D0.37 gene gene7396 http://www.ncbi.nlm.nih.gov/gene/?term=RB13317 RB13318 RB13318 RB13318 7140082 7140198 - hypothetical protein gene gene7397 http://www.ncbi.nlm.nih.gov/gene/?term=RB13318 RB13319 RB13319 RB13319 7140295 7141560 - hypothetical protein best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene7398 http://www.ncbi.nlm.nih.gov/gene/?term=RB13319 RB13323 RB13323 RB13323 7141536 7141673 + hypothetical protein gene gene7399 http://www.ncbi.nlm.nih.gov/gene/?term=RB13323 RB13324 RB13324 RB13324 7141677 7141787 + hypothetical protein gene gene7400 http://www.ncbi.nlm.nih.gov/gene/?term=RB13324 RB13325 RB13325 RB13325 7142044 7142310 - hypothetical protein gene gene7401 http://www.ncbi.nlm.nih.gov/gene/?term=RB13325 RB13327 RB13327 RB13327 7142336 7143601 - hypothetical protein best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene7402 http://www.ncbi.nlm.nih.gov/gene/?term=RB13327 RB13329 RB13329 RB13329 7143626 7143760 - hypothetical protein gene gene7403 http://www.ncbi.nlm.nih.gov/gene/?term=RB13329 RB13330 RB13330 RB13330 7143770 7145536 - O-linked GlcNAc transferase- TPR-containing transmembrane protein best DB hits: BLAST: gb:AAF26789.1%3B AC016829_13 (AC016829) O-linked GlcNAc%3B E%3D7e-08 gb:AAF51432.1%3B (AE003587) BcDNA:GH12144 gene product [Drosophila%3B E%3D3e-05 pir:S74806%3B hypothetical protein sll1628 - Synechocystis sp. (strain%3B E%3D2e-04 COG: sll1628%3B COG0457 TPR-repeat-containing proteins%3B E%3D2e-05 PFAM: PF02516%3B Oligosaccharyl transferase STT3 subu%3B E%3D0.29 PF00515%3B TPR Domain%3B E%3D0.03 gene gene7404 http://www.ncbi.nlm.nih.gov/gene/?term=RB13330 RB1334 RB1334 RB1334 679042 679332 + hypothetical protein gene gene712 http://www.ncbi.nlm.nih.gov/gene/?term=RB1334 RB1336 RB1336 RB1336 679357 680019 + hypothetical protein gene gene713 http://www.ncbi.nlm.nih.gov/gene/?term=RB1336 RB1337 RB1337 RB1337 680026 681441 - signal peptide best DB hits: PFAM: PF00036%3B EF hand%3B E%3D0.16 gene gene714 http://www.ncbi.nlm.nih.gov/gene/?term=RB1337 RB1339 RB1339 RB1339 681384 681689 - hypothetical protein gene gene715 http://www.ncbi.nlm.nih.gov/gene/?term=RB1339 RB1341 RB1341 RB1341 681705 681827 - hypothetical protein gene gene716 http://www.ncbi.nlm.nih.gov/gene/?term=RB1341 RB1342 RB1342 fliP fliP 681879 682889 + flagellar biosynthesis protein FliP FliP%2C with proteins FliQ and FliR%2C forms the core of the central channel in the flagella export apparatus gene gene717 http://www.ncbi.nlm.nih.gov/gene/?term=RB1342 RB1344 RB1344 fliQ fliQ 682896 683162 + flagellar biosynthetic protein fliQ PMID: 1597417 best DB hits: BLAST: swissprot:P74891%3B SSAS_SALTY SECRETION SYSTEM APPARATUS PROTEIN%3B E%3D3e-04 pir:H81264%3B flagellar biosynthetic protein Cj1675 [imported] -%3B E%3D6e-04 swissprot:P35535%3B FLIQ_BACSU FLAGELLAR BIOSYNTHETIC PROTEIN FLIQ%3B E%3D7e-04 COG: Cj1675%3B COG1987 Flagellar biosynthesis/type III secretory pathway%3B E%3D6e-05 PFAM: PF01313%3B Bacterial export proteins%2C famil%3B E%3D4.1e-26 gene gene718 http://www.ncbi.nlm.nih.gov/gene/?term=RB1344 RB1345 RB1345 fliR fliR 683165 683959 + flagellar biosynthetic protein fliR PMID: 9683497 best DB hits: BLAST: gb:AAC32324.1%3B (AF044580) flagellar protein FliR [Rhodobacter%3B E%3D1e-14 pir:B83465%3B flagellar biosynthetic protein FliR PA1448 [imported] -%3B E%3D2e-13 pir:E81323%3B flagellar biosynthetic protein Cj1179c [imported] -%3B E%3D4e-12 COG: PA1448%3B COG1684 Flagellar biosynthesis/type III secretory pathway%3B E%3D2e-14 PFAM: PF01311%3B Bacterial export proteins%2C fami%3B E%3D7.9e-32 gene gene719 http://www.ncbi.nlm.nih.gov/gene/?term=RB1345 RB1347 RB1347 flhB flhB 683952 685034 + flagellar biosynthetic protein FlhB PMID: 8299954 best DB hits: BLAST: pir:I40395%3B flagellar biosynthetic protein FlhB - Bacillus subtilis%3B E%3D7e-51 swissprot:P35538%3B FLHB_BACSU FLAGELLAR BIOSYNTHETIC PROTEIN FLHB%3B E%3D7e-51 pir:D72319%3B flagellar biosynthetic protein flhB TM0909 - Thermotoga%3B E%3D6e-46 COG: BS_flhB%3B COG1377 Flagellar biosynthesis/type III secretory pathway%3B E%3D6e-52 TM1672%3B COG2257 Uncharacterized BCR homologous to the cytoplasmic%3B E%3D9e-10 PFAM: PF01312%3B FlhB HrpN YscU SpaS Family%3B E%3D1.4e-91 gene gene720 http://www.ncbi.nlm.nih.gov/gene/?term=RB1347 RB1348 RB1348 RB1348 685040 685741 + hypothetical protein PMID: 10910347 best DB hits: BLAST: pir:A82607%3B hypothetical protein XF2023 [imported] - Xylella%3B E%3D4e-26 gene gene721 http://www.ncbi.nlm.nih.gov/gene/?term=RB1348 RB135 RB135 RB135 59440 59604 - hypothetical protein gene gene75 http://www.ncbi.nlm.nih.gov/gene/?term=RB135 RB1350 RB1350 RB1350 685879 686358 + hypothetical protein gene gene722 http://www.ncbi.nlm.nih.gov/gene/?term=RB1350 RB1352 RB1352 RB1352 686463 687803 + hypothetical protein gene gene723 http://www.ncbi.nlm.nih.gov/gene/?term=RB1352 RB1353 RB1353 RB1353 687873 689234 - cytochrome ba3- manganese transport protein mntH PMID: 9428682 best DB hits: BLAST: pir:T44945%3B hypothetical protein 6 [imported] - Natronobacterium%3B E%3D7e-14 swissprot:Q9RTP8%3B MNTH_DEIRA PROBABLE MANGANESE TRANSPORT PROTEIN%3B E%3D7e-08 swissprot:Q9RPF4%3B MNTH_SALTY MANGANESE TRANSPORT PROTEIN MNTH%3B E%3D9e-05 COG: DR1709%3B COG1914 Mn2+ and Fe2+ transporters of the NRAMP family%3B E%3D7e-09 PFAM: PF00122%3B E1-E2 ATPase%3B E%3D0.38 PF01566%3B Natural resistance-associated ma%3B E%3D0.00088 gene gene724 http://www.ncbi.nlm.nih.gov/gene/?term=RB1353 RB1355 RB1355 nagB nagB 689283 690014 + glucosamine-6-phosphate deaminase catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate gene gene725 http://www.ncbi.nlm.nih.gov/gene/?term=RB1355 RB1356 RB1356 nagA nagA 690011 690922 + N-acetylglucosamine-6-phosphate deacetylase PMID: 9634230 best DB hits: BLAST: pir:C70845%3B probable nagA protein - Mycobacterium tuberculosis%3B E%3D8e-23 embl:CAB93044.1%3B (AL357432) deacetylase [Streptomyces%3B E%3D2e-19 swissprot:O34450%3B NAGA_BACSU N-ACETYLGLUCOSAMINE-6-PHOSPHATE%3B E%3D5e-18 COG: Rv3332%3B COG1820 N-acetylglucosamine-6-phosphate deacetylase%3B E%3D7e-24 PFAM: PF02612%3B N-acetylglucosamine-6-phosphate deac%3B E%3D5.6e-05 gene gene726 http://www.ncbi.nlm.nih.gov/gene/?term=RB1356 RB1357 RB1357 RB1357 690962 691930 - hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:H70302%3B conserved hypothetical protein aq_035 - Aquifex aeolicus%3B E%3D2e-26 pir:A71678%3B probable response regulatory protein RP237 - Rickettsia%3B E%3D5e-21 pir:G82209%3B GGDEF family protein VC1353 [imported] - Vibrio cholerae%3B E%3D8e-21 COG: aq_035_2%3B COG2199 Diguanylate cyclase/phosphodiesterase domain 1%3B E%3D2e-27 PFAM: PF00990%3B GGDEF domain%3B E%3D2.6e-46 gene gene727 http://www.ncbi.nlm.nih.gov/gene/?term=RB1357 RB1358 RB1358 glgC glgC 691982 693322 - ADP-glucose pyrophosphorylase PMID: 11208782 best DB hits: BLAST: gb:AAB93540.1%3B (AF016923) ADP-glucose pyrophosphorylase [Thermus%3B E%3D1e-103 pir:C82428%3B glucose-1-phosphate adenylyltransferase VCA0699%3B E%3D1e-102 embl:CAC17471.1%3B (AJ291603) ADP glucose pyrophosphorylase%3B E%3D9e-99 COG: VCA0699%3B COG0448 ADP-glucose pyrophosphorylase%3B E%3D1e-103 MTH1759%3B COG1208 Nucleoside-diphosphate-sugar pyrophosphorylases%3B E%3D9e-20 BH1086%3B COG0448 ADP-glucose pyrophosphorylase%3B E%3D3e-14 PFAM: PF00483%3B Nucleotidyl transferase%3B E%3D5.7e-74 gene gene728 http://www.ncbi.nlm.nih.gov/gene/?term=RB1358 RB1359 RB1359 RB1359 693488 695377 + serine protease do-like DEGP PMID: 10684935 best DB hits: BLAST: swissprot:P18584%3B DEGP_CHLTR PROBABLE SERINE PROTEASE DO-LIKE%3B E%3D1e-63 pir:B81728%3B serine proteinase%2C HtrADegQ/DegS family TC0210%3B E%3D3e-63 embl:CAA72164.1%3B (Y11304) ORF E0 [Rhodobacter capsulatus]%3B E%3D5e-62 COG: CT823%3B COG0265 Trypsin-like serine proteases%2C typically periplasmic%2C%3B E%3D1e-64 CPn0979%3B COG0265 Trypsin-like serine proteases%2C typically%3B E%3D5e-63 htrA%3B COG0265 Trypsin-like serine proteases%2C typically periplasmic%2C%3B E%3D3e-57 PFAM: PF02874%3B ATP synthase alpha/beta family%2C%3B E%3D0.027 PF00089%3B Trypsin%3B E%3D9.8e-30 PF00595%3B PDZ domain (Also known as DHR o%3B E%3D1e-10 gene gene729 http://www.ncbi.nlm.nih.gov/gene/?term=RB1359 RB136 RB136 RB136 59847 60875 + glycine cleavage system protein T PMID: 10493123 best DB hits: BLAST: pir:H75528%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D4e-06 pir:S76507%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D7e-06 pir:D81837%3B hypothetical protein NMA1464 [imported] - Neisseria%3B E%3D1e-05 COG: DR0358%3B COG0354 Predicted aminomethyltransferase related to GcvT%3B E%3D4e-07 gene gene76 http://www.ncbi.nlm.nih.gov/gene/?term=RB136 RB1361 RB1361 RB1361 695412 696413 + hypothetical protein gene gene730 http://www.ncbi.nlm.nih.gov/gene/?term=RB1361 RB1362 RB1362 RB1362 696352 696600 + hypothetical protein gene gene731 http://www.ncbi.nlm.nih.gov/gene/?term=RB1362 RB1363 RB1363 ald ald 696588 697673 - alanine dehydrogenase PMID: 10473410 best DB hits: BLAST: gb:AAC23578.1%3B (AF070715) alanine dehydrogenase [Shewanella sp.%3B E%3D2e-97 pir:JE0388%3B alanine dehydrogenase (EC 1.4.1.1) - Enterobacter%3B E%3D1e-96 swissprot:P30234%3B DHA_MYCTU ALANINE DEHYDROGENASE (40 KDA ANTIGEN)%3B E%3D5e-96 COG: Rv2780%3B COG0686 Alanine dehydrogenase%3B E%3D5e-97 pntA%3B COG3288 NAD/NADP transhydrogenase alpha subunit%3B E%3D4e-21 PFAM: PF01262%3B Alanine dehydrogenase/pyridine nucl%3B E%3D1.6e-147 gene gene732 http://www.ncbi.nlm.nih.gov/gene/?term=RB1363 RB1364 RB1364 RB1364 697677 699089 - sulfatase best DB hits: PFAM: PF00884%3B Sulfatase%3B E%3D0.0012 gene gene733 http://www.ncbi.nlm.nih.gov/gene/?term=RB1364 RB1367 RB1367 RB1367 699089 700030 + UDP-N-acetyl-D-mannosaminuronic acid transferase PMID: 8905231 best DB hits: BLAST: pir:S74482%3B UDP-N-acetyl-D-mannosaminuronic acid transferase rffM-1%3B E%3D3e-32 embl:CAB92959.1%3B (AJ401026) hypothetical protein%3B E%3D2e-28 prf:2211258F%3B cpsF gene [Streptococcus pneumoniae]%3B E%3D1e-24 COG: slr1118%3B COG1922 Teichoic acid biosynthesis proteins%3B E%3D3e-33 gene gene734 http://www.ncbi.nlm.nih.gov/gene/?term=RB1367 RB1371 RB1371 sppA sppA 700085 701491 - proteinase IV homolog yteI PMID: 9384377 best DB hits: BLAST: pir:E69990%3B proteinase IV homolog yteI - Bacillus subtilis -----%3B E%3D1e-21 pir:F69207%3B proteinase IV - Methanobacterium thermoautotrophicum%3B E%3D1e-18 ddbj:BAB06917.1%3B (AP001518) proteinase IV [Bacillus halodurans]%3B E%3D3e-17 COG: BS_yteI%3B COG0616 Periplasmic serine proteases (ClpP class)%3B E%3D1e-22 PFAM: PF01343%3B Peptidase U7%3B E%3D3e-18 gene gene735 http://www.ncbi.nlm.nih.gov/gene/?term=RB1371 RB1372 RB1372 RB1372 701430 703052 + hypothetical protein gene gene736 http://www.ncbi.nlm.nih.gov/gene/?term=RB1372 RB1376 RB1376 RB1376 702919 705720 - adenylate cyclase best DB hits: BLAST: gb:AAF82144.1%3B AC034256_8 (AC034256) Contains similarity to F-box%3B E%3D0.004 ddbj:BAB21785.1%3B (AB051481) KIAA1694 protein [Homo sapiens]%3B E%3D0.061 embl:CAB95328.1%3B (AL359782) possible adenylate cyclase%3B E%3D0.096 gene gene737 http://www.ncbi.nlm.nih.gov/gene/?term=RB1376 RB138 RB138 RB138 60872 61516 + hypothetical protein gene gene77 http://www.ncbi.nlm.nih.gov/gene/?term=RB138 RB1381 RB1381 dys1 dys1 705784 706896 + deoxyhypusine synthase (Dhs) PMID: 11759840 PMID: 11016950 best DB hits: BLAST: gb:AAG19745.1%3B (AE005060) deoxyhypusine synthase%3B Dhs%3B E%3D4e-07 gb:AAB88953.1%3B (AE000945) deoxyhypusine synthase (dys1-2)%3B E%3D1e-05 embl:CAB65461.1%3B (AJ238622) deoxyhypusine synthase [Senecio%3B E%3D3e-05 COG: VNG1432G%3B COG1899 Deoxyhypusine synthase%3B E%3D4e-08 PFAM: PF01916%3B Deoxyhypusine synthase%3B E%3D0.57 gene gene738 http://www.ncbi.nlm.nih.gov/gene/?term=RB1381 RB1384 RB1384 RB1384 706928 707461 - hypothetical protein gene gene739 http://www.ncbi.nlm.nih.gov/gene/?term=RB1384 RB1386 RB1386 RB1386 707484 708536 - nucleoside hydrolase PMID: 10984043 best DB hits: BLAST: pir:G83627%3B probable nucleoside hydrolase PA0143 [imported] -%3B E%3D0.062 COG: PA0143%3B COG1957 Inosine-uridine nucleoside N-ribohydrolase%3B E%3D0.006 PFAM: PF01156%3B Inosine-uridine preferring nucle%3B E%3D0.52 gene gene740 http://www.ncbi.nlm.nih.gov/gene/?term=RB1386 RB1389 RB1389 RB1389 708434 708892 - hypothetical protein gene gene741 http://www.ncbi.nlm.nih.gov/gene/?term=RB1389 RB1390 RB1390 RB1390 708718 709167 - signal peptide gene gene742 http://www.ncbi.nlm.nih.gov/gene/?term=RB1390 RB1391 RB1391 RB1391 709164 710780 - nucleoside-diphosphate sugar epimerase PMID: 11206551 best DB hits: BLAST: swissprot:Q10403%3B YM16_MYCTU HYPOTHETICAL 31.7 KDA PROTEIN RV2216%3B E%3D9e-44 swissprot:P77775%3B YFCH_ECOLI HYPOTHETICAL 32.7 KDA PROTEIN IN%3B E%3D2e-42 gb:AAG57433.1%3B AE005462_8 (AE005462) sugar nucleotide%3B E%3D4e-42 COG: Rv2216%3B COG1090 Predicted nucleoside-diphosphate sugar epimerases%3B E%3D8e-45 gene gene743 http://www.ncbi.nlm.nih.gov/gene/?term=RB1391 RB1392 RB1392 rpoD rpoD 710683 711705 - RNA polymerase sigma 70 PMID: 10548737 best DB hits: BLAST: ddbj:BAA84590.1%3B (AB003084) RNA polymerase sigma 70 [Helicobacter%3B E%3D1e-14 swissprot:Q9ZMY3%3B RPSD_HELPJ RNA POLYMERASE SIGMA FACTOR RPOD%3B E%3D2e-14 gb:AAB81010.1%3B (U83703) RNA polymerase principal sigma factor%3B E%3D2e-14 COG: jhp0081%3B COG0568 DNA-directed RNA polymerase sigma subunits%3B E%3D1e-15 PFAM: PF00140%3B Sigma-70 factor%3B E%3D8.8e-19 gene gene744 http://www.ncbi.nlm.nih.gov/gene/?term=RB1392 RB1394 RB1394 RB1394 711758 711994 - hypothetical protein gene gene745 http://www.ncbi.nlm.nih.gov/gene/?term=RB1394 RB1395 RB1395 RB1395 712097 713056 + DNA-binding protein PMID: 8843436 best DB hits: BLAST: embl:CAB56371.1%3B (AL118514) DNA-binding protein%3B E%3D0.089 embl:CAC22757.1%3B (AL512944) hypothetical protein SC8D11.40%3B E%3D0.48 gb:AAD14631.1%3B (AF102623) trimethylamine corrinoid protein MttC%3B E%3D0.64 PFAM: PF02310%3B B12 binding domain%3B E%3D0.11 gene gene746 http://www.ncbi.nlm.nih.gov/gene/?term=RB1395 RB1398 RB1398 RB1398 713151 714437 - hypothetical protein PMID: 10360571 best DB hits: BLAST: pir:H72222%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D2e-04 COG: TM1686%3B COG1376 Uncharacterized ACR%3B E%3D2e-05 PFAM: PF01476%3B LysM domain%3B E%3D3.9e-07 gene gene747 http://www.ncbi.nlm.nih.gov/gene/?term=RB1398 RB14 RB14 RB14 5836 7386 + hypothetical protein gene gene6 http://www.ncbi.nlm.nih.gov/gene/?term=RB14 RB140 RB140 RB140 61578 64541 + serine/threonine protein kinase best DB hits: BLAST: swissprot:P71584%3B PKNB_MYCTU SERINETHREONINE-PROTEIN%3B E%3D2e-31 pir:T36717%3B probable serinethreonine protein kinase - Streptomyces%3B E%3D5e-31 swissprot:P54744%3B PKNB_MYCLE SERINETHREONINE-PROTEIN%3B E%3D9e-31 COG: Rv0014c_1%3B COG0515 Serine/threonine protein kinases%3B E%3D3e-32 PFAM: PF00069%3B Protein kinase domain%3B E%3D6.9e-49 PF00515%3B TPR Domain%3B E%3D0.72 gene gene78 http://www.ncbi.nlm.nih.gov/gene/?term=RB140 RB1400 RB1400 RB1400 714542 715402 + hypothetical protein gene gene748 http://www.ncbi.nlm.nih.gov/gene/?term=RB1400 RB1403 RB1403 RB1403 715604 715867 - hypothetical protein gene gene749 http://www.ncbi.nlm.nih.gov/gene/?term=RB1403 RB1405 RB1405 outD outD 715830 717395 + protein transporter PMID: 10360571 best DB hits: BLAST: pir:B72292%3B hypothetical protein TM1117 - Thermotoga maritima%3B E%3D4e-24 pir:C83561%3B probable type II secretion system protein PA0685%3B E%3D8e-22 pir:S32858%3B outD protein - Erwinia carotovora ----- embl:%3B E%3D1e-18 COG: TM1117%3B COG1450 General secretory pathway protein D%3B E%3D4e-25 PFAM: PF00263%3B Bacterial type II and III secr%3B E%3D1.7e-25 gene gene750 http://www.ncbi.nlm.nih.gov/gene/?term=RB1405 RB1408 RB1408 RB1408 717470 719293 + signal peptide gene gene751 http://www.ncbi.nlm.nih.gov/gene/?term=RB1408 RB1411 RB1411 RB1411 719337 720365 - dihydrodipicolinate synthase PMID: 10761919 best DB hits: BLAST: pir:H81878%3B probable dihydrodipicolinate synthase (EC 4.2.1.52)%3B E%3D2e-08 pir:D81141%3B dihydrodipicolinate synthase NMB0929 [imported] -%3B E%3D3e-08 pir:D83488%3B probable dihydrodipicolinate synthetase PA1254%3B E%3D7e-07 COG: NMB0929%3B COG0329 Dihydrodipicolinate synthetase/N-acetylneuraminate%3B E%3D3e-09 PFAM: PF00701%3B Dihydrodipicolinate synthetase f%3B E%3D9.1e-05 gene gene752 http://www.ncbi.nlm.nih.gov/gene/?term=RB1411 RB1412 RB1412 RB1412 720399 721325 + inositol monophosphatase PMID: 8626508 best DB hits: BLAST: swissprot:P56160%3B YHEB_CHLVI HYPOTHETICAL 28.2 KD PROTEIN IN HEMB%3B E%3D5e-37 pir:B70646%3B probable monophosphatase - Mycobacterium tuberculosis%3B E%3D4e-34 embl:CAB94593.1%3B (AL359214) monophosphatase%3B E%3D2e-33 COG: Rv3137%3B COG0483 Archaeal fructose-1%2C6-bisphosphatase and related%3B E%3D4e-35 VC2722%3B COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS)%3B E%3D2e-13 VC0745%3B COG0483 Archaeal fructose-1%2C6-bisphosphatase and related%3B E%3D3e-12 PFAM: PF00459%3B Inositol monophosphatase%3B E%3D6.9e-53 gene gene753 http://www.ncbi.nlm.nih.gov/gene/?term=RB1412 RB1413 RB1413 RB1413 721425 721550 + hypothetical protein gene gene754 http://www.ncbi.nlm.nih.gov/gene/?term=RB1413 RB1414 RB1414 RB1414 721538 722800 - signal peptide best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene755 http://www.ncbi.nlm.nih.gov/gene/?term=RB1414 RB1417 RB1417 RB1417 722874 723194 + hypothetical protein gene gene756 http://www.ncbi.nlm.nih.gov/gene/?term=RB1417 RB142 RB142 RB142 64669 66924 - hypothetical protein best DB hits: PFAM: PF00364%3B Biotin-requiring enzyme%3B E%3D0.031 PF00529%3B HlyD family secretion protein%3B E%3D0.78 gene gene79 http://www.ncbi.nlm.nih.gov/gene/?term=RB142 RB1420 RB1420 RB1420 723375 724427 + signal peptide gene gene757 http://www.ncbi.nlm.nih.gov/gene/?term=RB1420 RB1422 RB1422 RB1422 724470 726560 - signal peptide best DB hits: PFAM: PF01595%3B Domain of unknown function DUF21%3B E%3D0.59 gene gene758 http://www.ncbi.nlm.nih.gov/gene/?term=RB1422 RB1427 RB1427 RB1427 726737 728476 - monovalent cation/H+ antiporter subunit D subunit D of antiporter complex involved in resistance to high concentrations of Na+%2C K+%2C Li+ and/or alkali%3B contains an oxidoreductase domain%3B catalyzes the transfer of electrons from NADH to ubiquinone%3B in S. meliloti it is known to be involved specifically with K+ transport gene gene759 http://www.ncbi.nlm.nih.gov/gene/?term=RB1427 RB1428 RB1428 RB1428 728473 728799 - hypothetical protein gene gene760 http://www.ncbi.nlm.nih.gov/gene/?term=RB1428 RB1430 RB1430 RB1430 728796 730406 - NADH-ubiquinone oxidoreductase subunit PMID: 1470679 best DB hits: BLAST: embl:CAC14148.1%3B (AJ245399) NADH-ubiquinone%3B E%3D4e-80 gb:AAG19079.1%3B (AE005006) Vng0562c [Halobacterium sp. NRC-1]%3B E%3D4e-57 pir:F71683%3B NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain L2%3B E%3D7e-31 COG: VNG0562C%3B COG0651 Formate hydrogenlyase subunit 3%3B E%3D3e-58 RP283%3B COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)%3B E%3D7e-32 BH1316%3B COG0651 Formate hydrogenlyase subunit 3%3B E%3D2e-22 PFAM: PF00662%3B NADH-Ubiquinone oxidoreductase%3B E%3D0.69 PF00361%3B NADH-Ubiquinone/plastoquinone (%3B E%3D2.6e-49 gene gene761 http://www.ncbi.nlm.nih.gov/gene/?term=RB1430 RB1431 RB1431 RB1431 730340 731818 - monovalent cation/H+ antiporter subunit D subunit D of antiporter complex involved in resistance to high concentrations of Na+%2C K+%2C Li+ and/or alkali%3B contains an oxidoreductase domain%3B catalyzes the transfer of electrons from NADH to ubiquinone gene gene762 http://www.ncbi.nlm.nih.gov/gene/?term=RB1431 RB1432 RB1432 RB1432 731815 732414 - multisubunit Na+/H+ antiporter PMID: 11016950 best DB hits: BLAST: gb:AAG19081.1%3B (AE005007) Vng0565c [Halobacterium sp. NRC-1]%3B E%3D5e-11 pir:H71683%3B hypothetical protein RP285 - Rickettsia prowazekii%3B E%3D9e-09 pir:E75113%3B long hypothetical protein PAB0488 - Pyrococcus abyssi%3B E%3D5e-07 COG: VNG0565C%3B COG1006 Multisubunit Na+/H+ antiporter%3B E%3D4e-12 PFAM: PF01898%3B Protein of unknown function DUF67%3B E%3D1.9e-11 gene gene763 http://www.ncbi.nlm.nih.gov/gene/?term=RB1432 RB1433 RB1433 RB1433 732411 732848 - monovalent cation/H+ antiporter subunit B subunit B of antiporter complex involved in resistance to high concentrations of Na+%2C K+%2C Li+ and/or alkali gene gene764 http://www.ncbi.nlm.nih.gov/gene/?term=RB1433 RB1434 RB1434 RB1434 732845 733423 - monovalent cation/H+ antiporter subunit B subunit B of antiporter complex involved in resistance to high concentrations of Na+%2C K+%2C Li+ and/or alkali gene gene765 http://www.ncbi.nlm.nih.gov/gene/?term=RB1434 RB1436 RB1436 RB1436 733420 733782 - hypothetical protein PMID: 9679194 PMID: 11016950 best DB hits: BLAST: swissprot:O58672%3B Y944_PYRHO HYPOTHETICAL PROTEIN PH0944 -----%3B E%3D0.052 pir:C75465%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D0.13 pir:F75101%3B hypothetical protein PAB0803 - Pyrococcus abyssi%3B E%3D0.67 COG: PH0944%3B COG1320 Multisubunit Na+/H+ antiporter%3B E%3D0.005 gene gene766 http://www.ncbi.nlm.nih.gov/gene/?term=RB1436 RB1439 RB1439 RB1439 733796 734224 - hypothetical protein PMID: 10952301 best DB hits: BLAST: pir:F82494%3B conserved hypothetical protein VCA0153 [imported] -%3B E%3D5e-05 gb:AAF21817.1%3B AF097740_6 (AF097740) multiple resistance and pH%3B E%3D7e-04 ddbj:BAB05033.1%3B (AP001511) Na+H+ antiporter [Bacillus%3B E%3D0.004 COG: VCA0153%3B COG2212 Multisubunit Na+/H+ antiporter%2C MnhF subunit%3B E%3D4e-06 gene gene767 http://www.ncbi.nlm.nih.gov/gene/?term=RB1439 RB144 RB144 RB144 66870 68273 - membrane-fusion protein best DB hits: BLAST: pir:T31342%3B ragD protein - Bradyrhizobium japonicum ----- embl:%3B E%3D1e-05 pir:B83186%3B probable RND efflux membrane fusion protein precursor%3B E%3D2e-04 gb:AAK03081.1%3B (AE006139) unknown [Pasteurella multocida]%3B E%3D0.001 COG: PA3677%3B COG0845 Membrane-fusion protein%3B E%3D2e-05 PA2836%3B COG1566 Multidrug resistance efflux pump%3B E%3D0.001 VC0165%3B COG0845 Membrane-fusion protein%3B E%3D0.002 PFAM: PF00364%3B Biotin-requiring enzyme%3B E%3D0.021 gene gene80 http://www.ncbi.nlm.nih.gov/gene/?term=RB144 RB1442 RB1442 RB1442 734221 734754 - Na+/H+ antiporter PMID: 10360571 best DB hits: BLAST: pir:C72280%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D8e-09 pir:A71726%3B hypothetical protein RP156 - Rickettsia prowazekii%3B E%3D3e-08 pir:A75113%3B hypothetical protein PAB0485 - Pyrococcus abyssi (strain%3B E%3D8e-08 COG: TM1205%3B COG1863 Multisubunit Na+/H+ antiporter%3B E%3D8e-10 PFAM: PF01899%3B Protein of unknown function DUF68%3B E%3D1.9e-09 gene gene768 http://www.ncbi.nlm.nih.gov/gene/?term=RB1442 RB1443 RB1443 RB1443 734719 734886 + hypothetical protein gene gene769 http://www.ncbi.nlm.nih.gov/gene/?term=RB1443 RB1444 RB1444 RB1444 734968 735801 - TPR repeat-containing protein PMID: 10567266 best DB hits: BLAST: pir:C75341%3B tetratricopeptide repeat family protein - Deinococcus%3B E%3D9e-05 ddbj:BAA11643.2%3B (D82942) tetratricopeptide-repeat protein%3B E%3D1e-04 pir:E69078%3B conserved hypothetical protein MTH1585 -%3B E%3D0.006 COG: DR1891%3B COG0457 TPR-repeat-containing proteins%3B E%3D9e-06 gene gene770 http://www.ncbi.nlm.nih.gov/gene/?term=RB1444 RB1446 RB1446 RB1446 735731 736513 - hypothetical protein gene gene771 http://www.ncbi.nlm.nih.gov/gene/?term=RB1446 RB1449 RB1449 RB1449 736500 736697 + hypothetical protein gene gene772 http://www.ncbi.nlm.nih.gov/gene/?term=RB1449 RB1451 RB1451 RB1451 736766 738160 - serine/threonine protein kinase related protein PMID: 9371463 PMID: 11677609 best DB hits: BLAST: gb:AAG31169.1%3B (AF314961) unknown [Salmonella typhimurium]%3B E%3D0.043 gb:AAB89850.1%3B (AE001008) conserved hypothetical protein%3B E%3D0.049 pir:A82284%3B conserved hypothetical protein VC0762 [imported] -%3B E%3D0.13 COG: AF1399%3B COG1520 Uncharacterized proteins of WD40-like repeat family%3B E%3D0.005 PFAM: PF01011%3B PQQ enzyme repeat%3B E%3D5.4e-05 gene gene773 http://www.ncbi.nlm.nih.gov/gene/?term=RB1451 RB1453 RB1453 RB1453 738182 738298 + hypothetical protein gene gene774 http://www.ncbi.nlm.nih.gov/gene/?term=RB1453 RB1454 RB1454 araC araC 738371 739687 + xylose operon regulatory protein PMID: 7542800 best DB hits: BLAST: swissprot:P45043%3B XYLR_HAEIN XYLOSE OPERON REGULATORY PROTEIN%3B E%3D8e-37 swissprot:P37390%3B XYLR_ECOLI XYLOSE OPERON REGULATORY PROTEIN%3B E%3D1e-34 ddbj:BAB03212.1%3B (AB046360) xylose operon regulatory%3B E%3D6e-32 COG: HI1106_1%3B COG1609 Transcriptional regulators%3B E%3D3e-17 xylR_2%3B COG2207 AraC-type DNA-binding domain-containing proteins%3B E%3D2e-16 xylR_1%3B COG1609 Transcriptional regulators%3B E%3D1e-13 PFAM: PF00165%3B Bacterial regulatory helix-turn-heli%3B E%3D3.1e-17 gene gene775 http://www.ncbi.nlm.nih.gov/gene/?term=RB1454 RB1456 RB1456 RB1456 739805 741292 + N-acetylgalactosamine-6-sulfatase PMID: 10699374 best DB hits: BLAST: ddbj:BAA04535.1%3B (D17629) N-acetylgalactosamine 6-sulfate%3B E%3D6e-33 gb:AAF63858.1%3B (AF112242) N-acetylgalactosamine-6-sulfate%3B E%3D3e-32 swissprot:P50428%3B ARSA_MOUSE ARYLSULFATASE A PRECURSOR (ASA)%3B E%3D5e-29 COG: PA0183%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D7e-26 PAB0793%3B COG2194 Predicted membrane-associated%2C metal-dependent%3B E%3D3e-05 Rv3077%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D0.001 PFAM: PF00884%3B Sulfatase%3B E%3D3.8e-40 gene gene776 http://www.ncbi.nlm.nih.gov/gene/?term=RB1456 RB1457 RB1457 RB1457 741299 741433 + hypothetical protein gene gene777 http://www.ncbi.nlm.nih.gov/gene/?term=RB1457 RB1458 RB1458 RB1458 741400 742872 - hypothetical protein gene gene778 http://www.ncbi.nlm.nih.gov/gene/?term=RB1458 RB146 RB146 RB146 68277 69164 - cation efflux system PMID: 8203018 best DB hits: BLAST: pir:C70415%3B cation efflux system (czcB-like) - Aquifex aeolicus%3B E%3D2e-10 pir:B82357%3B conserved hypothetical protein VC0165 [imported] -%3B E%3D3e-10 ddbj:BAA34299.1%3B (AB015853) MexX [Pseudomonas aeruginosa]%3B E%3D5e-08 COG: aq_1331%3B COG0845 Membrane-fusion protein%3B E%3D2e-11 emrA%3B COG1566 Multidrug resistance efflux pump%3B E%3D0.003 PA3402%3B COG0845 Membrane-fusion protein%3B E%3D0.003 PFAM: PF00364%3B Biotin-requiring enzyme%3B E%3D0.0052 PF00529%3B HlyD family secretion protein%3B E%3D6.1e-07 gene gene81 http://www.ncbi.nlm.nih.gov/gene/?term=RB146 RB1461 RB1461 RB1461 742963 743517 - signal peptide PMID: 8969502 best DB hits: BLAST: ddbj:BAA06427.1%3B (D30762) unknown [Bacillus subtilis]%3B E%3D0.084 swissprot:P42401%3B YCKC_BACSU HYPOTHETICAL 17.0 KD PROTEIN IN COMJ%3B E%3D0.084 COG: BS_yckC%3B COG1714 Uncharacterized membrane protein/domain%3B E%3D0.008 gene gene779 http://www.ncbi.nlm.nih.gov/gene/?term=RB1461 RB1462 RB1462 RB1462 743521 743799 - hypothetical protein gene gene780 http://www.ncbi.nlm.nih.gov/gene/?term=RB1462 RB1463 RB1463 RB1463 743584 743886 + hypothetical protein gene gene781 http://www.ncbi.nlm.nih.gov/gene/?term=RB1463 RB1464 RB1464 RB1464 743871 745739 + N-acetylgalactosamine 6-sulfate sulfatase GALNS PMID: 8020961 best DB hits: BLAST: ddbj:BAA04535.1%3B (D17629) N-acetylgalactosamine 6-sulfate%3B E%3D9e-28 swissprot:P50473%3B ARS_STRPU ARYLSULFATASE PRECURSOR (ARYL-SULFATE%3B E%3D4e-26 gb:AAF63858.1%3B (AF112242) N-acetylgalactosamine-6-sulfate%3B E%3D6e-26 COG: PA0183%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D2e-17 PFAM: PF00884%3B Sulfatase%3B E%3D2.3e-39 gene gene782 http://www.ncbi.nlm.nih.gov/gene/?term=RB1464 RB1467 RB1467 RB1467 745811 749368 + signal peptide best DB hits: BLAST: gb:AAF87662.1%3B AF223645_1 (AF223645) lipase [uncultured bacterium]%3B E%3D0.54 PFAM: PF01738%3B Dienelactone hydrolase%3B E%3D0.00062 gene gene783 http://www.ncbi.nlm.nih.gov/gene/?term=RB1467 RB1470 RB1470 RB1470 749365 751722 + hypothetical protein best DB hits: PFAM: PF02018%3B Cellulose binding domain%3B E%3D0.61 gene gene784 http://www.ncbi.nlm.nih.gov/gene/?term=RB1470 RB1472 RB1472 RB1472 751719 753245 + signal peptide gene gene785 http://www.ncbi.nlm.nih.gov/gene/?term=RB1472 RB1474 RB1474 RB1474 753312 753482 - hypothetical protein gene gene786 http://www.ncbi.nlm.nih.gov/gene/?term=RB1474 RB1475 RB1475 arsB arsB 753465 755204 + arylsulfatase PMID: 1427856 best DB hits: BLAST: swissprot:P33727%3B ARSB_FELCA ARYLSULFATASE B PRECURSOR (ASB)%3B E%3D2e-47 pdb:1FSU%3B 4-Sulfatase (Human)%3B E%3D3e-47 gb:AAA51779.1%3B (M32373) arylsulfatase B precursor [Homo sapiens]%3B E%3D4e-47 COG: PA0183%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D2e-31 PFAM: PF00884%3B Sulfatase%3B E%3D3.6e-76 gene gene787 http://www.ncbi.nlm.nih.gov/gene/?term=RB1475 RB1476 RB1476 RB1476 755223 755366 + hypothetical protein gene gene788 http://www.ncbi.nlm.nih.gov/gene/?term=RB1476 RB1477 RB1477 atsA atsA 755327 756943 + arylsulfatase PMID: 7744061 best DB hits: BLAST: swissprot:P51691%3B ARS_PSEAE ARYLSULFATASE (ARYL-SULFATE%3B E%3D1e-39 pir:S69336%3B arylsulfatase (EC 3.1.6.1) - Pseudomonas aeruginosa%3B E%3D3e-39 embl:CAA36398.1%3B (X52150) arylsulphatase a [Homo sapiens]%3B E%3D2e-35 COG: PA0183%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D9e-41 PFAM: PF00884%3B Sulfatase%3B E%3D1.3e-43 gene gene789 http://www.ncbi.nlm.nih.gov/gene/?term=RB1477 RB1478 RB1478 RB1478 756943 758943 + hypothetical protein gene gene790 http://www.ncbi.nlm.nih.gov/gene/?term=RB1478 RB148 RB148 secA secA 69161 71212 - preprotein translocase subunit SecA functions in protein export%3B can interact with acidic membrane phospholipids and the SecYEG protein complex%3B binds to preproteins%3B binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein%3B ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane%3B additional proteins SecD/F/YajC aid SecA recycling%3B exists in an equilibrium between monomers and dimers%3B may possibly form higher order oligomers%3B in some organisms%2C there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins gene gene82 http://www.ncbi.nlm.nih.gov/gene/?term=RB148 RB1480 RB1480 ilvD ilvD 758954 760687 - dihydroxy-acid dehydratase catalyzes the formation of 3-methyl-2-oxobutanoate from 2%2C3%2C-dihydroxy-3-methylbutanoate gene gene791 http://www.ncbi.nlm.nih.gov/gene/?term=RB1480 RB1481 RB1481 RB1481 760742 761509 + hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:E83580%3B conserved hypothetical protein PA0529 [imported] -%3B E%3D1e-34 pir:A69811%3B conserved hypothetical protein yflK - Bacillus subtilis%3B E%3D4e-32 pir:F83366%3B conserved hypothetical protein PA2229 [imported] -%3B E%3D2e-31 COG: PA0529%3B COG2258 Uncharacterized BCR%3B E%3D1e-35 gene gene792 http://www.ncbi.nlm.nih.gov/gene/?term=RB1481 RB1483 RB1483 RB1483 761490 762293 + sensor histidine kinase/response regulator PMID: 10567266 best DB hits: BLAST: gb:AAF12583.1%3B AE001826_52 (AE001826) sensor histidine%3B E%3D4e-09 pir:D75429%3B sensory box sensor histidine kinase - Deinococcus%3B E%3D5e-09 pir:A69158%3B sensory transduction histidine kinase - Methanobacterium%3B E%3D6e-08 COG: DRB0029_2%3B COG0642 Sensory transduction histidine kinases%3B E%3D4e-10 PFAM: PF02518%3B Histidine kinase-%2C DNA gyrase B-%2C p%3B E%3D6.3e-13 gene gene793 http://www.ncbi.nlm.nih.gov/gene/?term=RB1483 RB1485 RB1485 polB polB 762303 764072 + DNA polymerase beta family protein PMID: 9537320 best DB hits: BLAST: pir:F70423%3B DNA polymerase beta family - Aquifex aeolicus -----%3B E%3D1e-110 ddbj:BAB06826.1%3B (AP001517) DNA-dependent DNA polymerase beta%3B E%3D1e-105 pir:C69985%3B probable DNA-dependent DNA polymerase beta chain yshC -%3B E%3D1e-102 COG: aq_1422_1%3B COG1796 DNA polymerase IV (family X)%3B E%3D4e-62 BH3107_2%3B COG1387 Histidinol phosphatase and related hydrolases of%3B E%3D4e-53 Ta0758_1%3B COG1796 DNA polymerase IV (family X)%3B E%3D3e-51 PFAM: PF00966%3B DNA polymerase X family%3B E%3D6.5e-35 PF02231%3B PHP domain N-terminal region%3B E%3D1.3e-22 PF02811%3B PHP domain C-terminal region%3B E%3D1.6e-16 gene gene794 http://www.ncbi.nlm.nih.gov/gene/?term=RB1485 RB1487 RB1487 RB1487 764104 764424 + hypothetical protein PMID: 10761919 best DB hits: BLAST: pir:D81801%3B conserved hypothetical protein NMA1764 [imported] -%3B E%3D2e-09 pir:G81066%3B conserved hypothetical protein NMB1575 [imported] -%3B E%3D2e-09 pir:F83200%3B conserved hypothetical protein PA3566 [imported] -%3B E%3D3e-07 COG: NMB1575%3B COG1359 Uncharacterized ACR%3B E%3D2e-10 PFAM: PF02619%3B Uncharacterized ACR%2C YneC family COG%3B E%3D1.7e-17 gene gene795 http://www.ncbi.nlm.nih.gov/gene/?term=RB1487 RB1488 RB1488 trxB trxB 764421 766184 + thioredoxin reductase PMID: 8843436 best DB hits: BLAST: embl:CAB93736.1%3B (AL357613) thioredoxin reductase.%3B E%3D2e-67 pir:H72322%3B thioredoxin reductase - Thermotoga maritima (strain%3B E%3D2e-27 ddbj:BAB07290.1%3B (AP001519) thioredoxin reductase (NADPH)%3B E%3D1e-26 COG: TM0869%3B COG0492 Thioredoxin reductase/alkyl hydroperoxide reductase%3B E%3D2e-28 VNG1259G%3B COG0492 Thioredoxin reductase/alkyl hydroperoxide%3B E%3D1e-21 aq_500%3B COG0492 Thioredoxin reductase/alkyl hydroperoxide reductase%3B E%3D1e-20 PFAM: PF00027%3B Cyclic nucleotide-binding domai%3B E%3D1.6e-07 PF00732%3B GMC oxidoreductases%3B E%3D0.87 PF01946%3B Thi4 family%3B E%3D0.0023 gene gene796 http://www.ncbi.nlm.nih.gov/gene/?term=RB1488 RB149 RB149 RB149 71197 73215 - outer membrane channel protein PMID: 9852029 best DB hits: BLAST: gb:AAD12177.1%3B (AF029405) outer membrane channel protein%3B E%3D0.001 gb:AAD30205.1%3B (AF094824) IbeB [Escherichia coli]%3B E%3D0.039 swissprot:Q51487%3B OPRM_PSEAE OUTER MEMBRANE PROTEIN OPRM PRECURSOR%3B E%3D0.049 COG: PA0427%3B COG1538 Outer membrane protein%3B E%3D0.005 PFAM: PF02321%3B Outer membrane efflux protein%3B E%3D0.0013 gene gene83 http://www.ncbi.nlm.nih.gov/gene/?term=RB149 RB1491 RB1491 RB1491 766265 766600 - hypothetical protein gene gene797 http://www.ncbi.nlm.nih.gov/gene/?term=RB1491 RB1492 RB1492 RB1492 766339 766536 + hypothetical protein gene gene798 http://www.ncbi.nlm.nih.gov/gene/?term=RB1492 RB1493 RB1493 RB1493 766403 766627 + hypothetical protein gene gene799 http://www.ncbi.nlm.nih.gov/gene/?term=RB1493 RB1495 RB1495 RB1495 766865 768280 - hypothetical protein best DB hits: BLAST: pir:T34965%3B probable membrane protein - Streptomyces coelicolor%3B E%3D2e-09 gb:AAB06263.1%3B (L39876) ORF1%3B PepX [Caldicellulosiruptor%3B E%3D4e-04 pir:E75460%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D0.002 COG: DR0919%3B COG1721 Uncharacterized ACR%3B E%3D2e-04 PFAM: PF01882%3B Protein of unknown function DUF58%3B E%3D7.1e-20 gene gene800 http://www.ncbi.nlm.nih.gov/gene/?term=RB1495 RB1499 RB1499 moxR moxR 768277 769395 - methanol dehydrogenase regulatory protein PMID: 10484179 best DB hits: BLAST: ddbj:BAB04323.1%3B (AP001509) methanol dehydrogenase regulatory%3B E%3D4e-87 pir:T34964%3B probable regulatory protein - Streptomyces coelicolor%3B E%3D6e-81 pir:H72289%3B hypothetical protein TM1132 - Thermotoga maritima%3B E%3D1e-80 COG: BH0604%3B COG0714 MoxR-like ATPases%3B E%3D4e-88 PFAM: PF00004%3B ATPase associated with va%3B E%3D4.6e-05 PF01078%3B Magnesium chelatase%2C subunit Chl%3B E%3D8e-14 gene gene801 http://www.ncbi.nlm.nih.gov/gene/?term=RB1499 RB150 RB150 RB150 73100 73390 + hypothetical protein gene gene84 http://www.ncbi.nlm.nih.gov/gene/?term=RB150 RB1501 RB1501 RB1501 769419 769571 + hypothetical protein gene gene802 http://www.ncbi.nlm.nih.gov/gene/?term=RB1501 RB1502 RB1502 RB1502 769609 770010 + response regulator PMID: 10524254 PMID: 12004073 best DB hits: BLAST: gb:AAF61932.1%3B (AF230804) sigma-54 activator protein Act1%3B E%3D1e-07 swissprot:Q00934%3B PILR_PSEAE TYPE 4 FIMBRIAE EXPRESSION REGULATORY%3B E%3D1e-06 pir:B70195%3B response regulatory protein (rrp-2) homolog - Lyme%3B E%3D1e-06 COG: PA4547%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D1e-07 BH1808%3B COG0745 Response regulators consisting of a CheY-like%3B E%3D6e-07 DRB0029_1%3B COG0784 CheY-like receiver domains%3B E%3D3e-06 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D4.3e-14 gene gene803 http://www.ncbi.nlm.nih.gov/gene/?term=RB1502 RB1503 RB1503 RB1503 769965 771212 + hypothetical protein gene gene804 http://www.ncbi.nlm.nih.gov/gene/?term=RB1503 RB1507 RB1507 miaA miaA 771198 772202 - tRNA delta(2)-isopentenylpyrophosphate transferase PMID: 10910347 best DB hits: BLAST: swissprot:Q9PH56%3B MIAA_XYLFA TRNA%3B E%3D1e-44 swissprot:Q9KV12%3B MIAA_VIBCH TRNA%3B E%3D2e-44 swissprot:O30762%3B MIAA_PSEPU TRNA%3B E%3D4e-44 COG: XF0090%3B COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase%3B E%3D1e-45 PFAM: PF01715%3B IPP transferase%3B E%3D3e-70 gene gene805 http://www.ncbi.nlm.nih.gov/gene/?term=RB1507 RB1508 RB1508 RB1508 772233 772841 + n-terminal acetyltransferase PMID: 3106324 best DB hits: BLAST: pir:D75017%3B n-terminal acetyltransferase PAB1098 - Pyrococcus abyssi%3B E%3D4e-05 pir:A71455%3B probable acetyltransferase - Pyrococcus horikoshii%3B E%3D2e-04 embl:CAA51674.1%3B (X73149) Nourseothricin acetyltransferase%3B E%3D3e-04 COG: PAB1098%3B COG0456 Acetyltransferases%3B E%3D4e-06 BS_yobR%3B COG0454 Histone acetyltransferase HPA2 and related%3B E%3D1e-04 PA4678%3B COG0456 Acetyltransferases%3B E%3D5e-04 PFAM: PF00583%3B Acetyltransferase (GNAT) family%3B E%3D3.8e-21 gene gene806 http://www.ncbi.nlm.nih.gov/gene/?term=RB1508 RB1509 RB1509 RB1509 772909 773379 - hypothetical protein gene gene807 http://www.ncbi.nlm.nih.gov/gene/?term=RB1509 RB1511 RB1511 RB1511 773376 774995 - hypothetical protein gene gene808 http://www.ncbi.nlm.nih.gov/gene/?term=RB1511 RB1513 RB1513 RB1513 774907 775203 - hypothetical protein gene gene809 http://www.ncbi.nlm.nih.gov/gene/?term=RB1513 RB1514 RB1514 RB1514 775037 775309 + hypothetical protein gene gene810 http://www.ncbi.nlm.nih.gov/gene/?term=RB1514 RB1516 RB1516 RB1516 775306 776193 - hypothetical protein PMID: 9403685 best DB hits: BLAST: pir:G70121%3B conserved hypothetical protein BB0175 - Lyme disease%3B E%3D5e-14 swissprot:P71761%3B YE80_MYCTU HYPOTHETICAL 34.3 KDA PROTEIN RV1480%3B E%3D1e-11 pir:G82493%3B conserved hypothetical protein VCA0174 [imported] -%3B E%3D3e-09 COG: BB0175%3B COG1721 Uncharacterized ACR%3B E%3D4e-15 PFAM: PF01882%3B Protein of unknown function DUF%3B E%3D8.2e-16 gene gene811 http://www.ncbi.nlm.nih.gov/gene/?term=RB1516 RB1517 RB1517 lolD lolD 776190 776879 - lipoprotein releasing system ATP-binding protein lolD PMID: 7542800 best DB hits: BLAST: pir:D83271%3B probable ATP-binding component of ABC transporter PA2987%3B E%3D2e-50 swissprot:P45247%3B LOLD_HAEIN LIPOPROTEIN RELEASING SYSTEM%3B E%3D2e-49 pir:D83071%3B probable ATP-binding component of ABC transporter PA4594%3B E%3D2e-48 COG: PA2987%3B COG1136 ABC-type (unclassified) transport system%2C ATPase%3B E%3D2e-51 PFAM: PF00006%3B ATP synthase alpha/beta family%2C n%3B E%3D0.11 PF01202%3B Shikimate kinase%3B E%3D0.46 PF00005%3B ABC transporter%3B E%3D1.7e-54 gene gene812 http://www.ncbi.nlm.nih.gov/gene/?term=RB1517 RB1518 RB1518 RB1518 776896 777078 - hypothetical protein gene gene813 http://www.ncbi.nlm.nih.gov/gene/?term=RB1518 RB1519 RB1519 RB1519 777075 777299 - hypothetical protein gene gene814 http://www.ncbi.nlm.nih.gov/gene/?term=RB1519 RB152 RB152 RB152 73233 73403 + hypothetical protein gene gene85 http://www.ncbi.nlm.nih.gov/gene/?term=RB152 RB1520 RB1520 RB1520 777178 777492 + hypothetical protein gene gene815 http://www.ncbi.nlm.nih.gov/gene/?term=RB1520 RB1522 RB1522 gspG gspG 777494 778657 + general secretion pathway protein G PMID: 8326859 best DB hits: BLAST: gb:AAF36472.1%3B AF127982_2 (AF127982) GspG [Burkholderia cepacia]%3B E%3D1e-04 ddbj:BAB18792.1%3B (AB050004) GspG [Burkholderia cepacia]%3B E%3D1e-04 gb:AAC83358.1%3B (AF092918) outer membrane secretion protein T%3B E%3D3e-04 COG: PA3101%3B COG2165 General secretory pathway proteins G and H and%3B E%3D2e-04 PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.16 gene gene816 http://www.ncbi.nlm.nih.gov/gene/?term=RB1522 RB1523 RB1523 RB1523 778654 779130 + hypothetical protein gene gene817 http://www.ncbi.nlm.nih.gov/gene/?term=RB1523 RB1526 RB1526 RB1526 779301 780287 + hypothetical protein PMID: 11759840 best DB hits: BLAST: pir:S75044%3B hypothetical protein sll1606 - Synechocystis sp. (strain%3B E%3D0.004 pir:E70470%3B conserved hypothetical protein aq_1986 - Aquifex%3B E%3D0.005 COG: sll1606%3B COG1434 Uncharacterized ACR%3B E%3D3e-04 PFAM: PF02698%3B Uncharacterized ACR%2C COG1434%3B E%3D0.0017 gene gene818 http://www.ncbi.nlm.nih.gov/gene/?term=RB1526 RB1527 RB1527 pa1G pa1G 780317 781096 - platelet-activating factor acetylhydrolase IB gamma subunit PMID: 8083218 best DB hits: BLAST: gb:AAH00398.1%3B AAH00398 (BC000398) platelet-activating factor%3B E%3D3e-10 ref:XP_006434.1%3B platelet-activating factor acetylhydrolase%2C%3B E%3D3e-10 gb:AAC52997.1%3B (U57747) platelet-activating factor%3B E%3D1e-09 PFAM: PF00657%3B Lipase/Acylhydrolase with GDSL-li%3B E%3D0.00082 PF02266%3B Platelet activating factor acetyl%3B E%3D0.00029 gene gene819 http://www.ncbi.nlm.nih.gov/gene/?term=RB1527 RB1529 RB1529 slr0309 slr0309 781095 782537 + methyltransferase PMID: 8590279 best DB hits: BLAST: swissprot:Q55914%3B Y309_SYNY3 HYPOTHETICAL METHYLTRANSFERASE%3B E%3D3e-26 swissprot:O58549%3B Y819_PYRHO HYPOTHETICAL METHYLTRANSFERASE PH0819%3B E%3D1e-23 swissprot:P42349%3B YC42_SYNY3 HYPOTHETICAL METHYLTRANSFERASE%3B E%3D2e-18 COG: slr0309%3B COG1032 Fe-S oxidoreductases family 2%3B E%3D3e-27 gene gene820 http://www.ncbi.nlm.nih.gov/gene/?term=RB1529 RB1531 RB1531 RB1531 782534 783889 + hypothetical protein gene gene821 http://www.ncbi.nlm.nih.gov/gene/?term=RB1531 RB1532 RB1532 pknA pknA 783980 785953 - serine/threonine-protein kinase pknA PMID: 8969512 best DB hits: BLAST: pir:T36717%3B probable serinethreonine protein kinase - Streptomyces%3B E%3D4e-36 swissprot:P54743%3B PKNA_MYCLE SERINETHREONINE-PROTEIN%3B E%3D7e-36 swissprot:P71585%3B PKNA_MYCTU SERINETHREONINE-PROTEIN%3B E%3D1e-35 COG: Rv0015c%3B COG0515 Serine/threonine protein kinases%3B E%3D1e-36 PFAM: PF00069%3B Protein kinase domain%3B E%3D2.4e-61 gene gene822 http://www.ncbi.nlm.nih.gov/gene/?term=RB1532 RB1533 RB1533 RB1533 785889 787091 - hypothetical protein PMID: 8843436 best DB hits: BLAST: embl:CAB55728.1%3B (AL117387) hypothetical protein SCF41.25%3B E%3D1e-13 ddbj:BAA87752.1%3B (AB016260) Hypothetical gene [Agrobacterium%3B E%3D3e-06 gene gene823 http://www.ncbi.nlm.nih.gov/gene/?term=RB1533 RB1535 RB1535 RB1535 787199 788518 + hypothetical protein gene gene824 http://www.ncbi.nlm.nih.gov/gene/?term=RB1535 RB1538 RB1538 lysA lysA 788614 790083 - diaminopimelate decarboxylase PMID: 9163424 best DB hits: BLAST: gb:AAG45731.1%3B AF229441_2 (AF229441) y4yA [Sinorhizobium fredii]%3B E%3D7e-30 swissprot:P55709%3B Y4YA_RHISN HYPOTHETICAL 49.9 KD PROTEIN Y4YA%3B E%3D3e-29 gb:AAG45729.1%3B AF229440_2 (AF229440) y4yA [Sinorhizobium fredii]%3B E%3D3e-26 COG: sll0504%3B COG0019 Diaminopimelate decarboxylase%3B E%3D7e-08 PFAM: PF02784%3B Pyridoxal-dependent decarboxyla%3B E%3D0.71 gene gene825 http://www.ncbi.nlm.nih.gov/gene/?term=RB1538 RB154 RB154 RB154 73499 81046 + lipoprotein receptor-related protein PMID: 6091915 best DB hits: BLAST: pir:S75200%3B fat protein - Synechocystis sp. (strain PCC 6803) -----%3B E%3D7e-24 ddbj:BAA88688.1%3B (AB011533) MEGF7 [Rattus norvegicus]%3B E%3D3e-18 ddbj:BAA32468.1%3B (AB011540) MEGF7 [Homo sapiens]%3B E%3D2e-17 COG: sll0656_1%3B COG3204 Uncharacterized BCR%3B E%3D5e-14 PFAM: PF00058%3B Low-density lipoprotein receptor%3B E%3D6.3e-06 PF00028%3B Cadherin domain%3B E%3D0.036 PF00801%3B PKD domain%3B E%3D0.073 gene gene86 http://www.ncbi.nlm.nih.gov/gene/?term=RB154 RB1542 RB1542 RB1542 790376 790627 - hypothetical protein gene gene827 http://www.ncbi.nlm.nih.gov/gene/?term=RB1542 RB1545 RB1545 gspD gspD 790598 794395 + general secretion pathway protein D PMID: 2677007 best DB hits: BLAST: swissprot:P45758%3B GSPD_ECOLI PROBABLE GENERAL SECRETION PATHWAY%3B E%3D5e-22 swissprot:P15644%3B GSPD_KLEPN GENERAL SECRETION PATHWAY PROTEIN D%3B E%3D2e-21 gb:AAA58785.1%3B (L33796) EpsD [Vibrio cholerae]%3B E%3D2e-18 COG: gspD%3B COG1450 General secretory pathway protein D%3B E%3D5e-23 PFAM: PF00263%3B Bacterial type II and III secret%3B E%3D2.9e-05 gene gene828 http://www.ncbi.nlm.nih.gov/gene/?term=RB1545 RB1549 RB1549 RB1549 794448 794738 + hypothetical protein gene gene829 http://www.ncbi.nlm.nih.gov/gene/?term=RB1549 RB1550 RB1550 RB1550 794665 795552 + signal peptide gene gene830 http://www.ncbi.nlm.nih.gov/gene/?term=RB1550 RB1553 RB1553 RB1553 795468 795656 - hypothetical protein gene gene831 http://www.ncbi.nlm.nih.gov/gene/?term=RB1553 RB1554 RB1554 RB1554 795676 795897 + hypothetical protein gene gene832 http://www.ncbi.nlm.nih.gov/gene/?term=RB1554 RB1555 RB1555 RB1555 795848 797278 - NADH-dependent dehydrogenase PMID: 10484179 best DB hits: BLAST: gb:AAC23913.1%3B (AF039207) NADH-dependent dehydrogenase homolog%3B E%3D1e-09 ddbj:BAB04967.1%3B (AP001511) NADH-dependent dyhydrogenase%3B E%3D1e-08 swissprot:Q54728%3B YJHC_STRPN HYPOTHETICAL PROTEIN IN NANB 3'REGION%3B E%3D3e-07 COG: BH1248%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D9e-10 PFAM: PF01408%3B Oxidoreductase%2C NAD-bindi%3B E%3D3.2e-12 gene gene833 http://www.ncbi.nlm.nih.gov/gene/?term=RB1555 RB1557 RB1557 RB1557 797241 797420 + hypothetical protein gene gene834 http://www.ncbi.nlm.nih.gov/gene/?term=RB1557 RB1559 RB1559 pgaM pgaM 797674 798255 - phosphoglycerate mutase PMID: 9537320 best DB hits: BLAST: pir:A70471%3B phosphoglycerate mutase 1 - Aquifex aeolicus -----%3B E%3D4e-12 pir:A75439%3B probable phosphoglycerate mutase - Deinococcus%3B E%3D2e-11 pir:G72260%3B phosphoglycerate mutase - Thermotoga maritima (strain%3B E%3D2e-11 COG: aq_1990%3B COG0406 Phosphoglycerate mutase/fructose-2%2C6-bisphosphatase%3B E%3D4e-13 Rv2228c_2%3B COG0406 Phosphoglycerate%3B E%3D3e-05 slr1748%3B COG0406 Phosphoglycerate mutase/fructose-2%2C6-bisphosphatase%3B E%3D4e-05 PFAM: PF00300%3B Phosphoglycerate mutase%3B E%3D0.0029 gene gene835 http://www.ncbi.nlm.nih.gov/gene/?term=RB1559 RB1561 RB1561 rpe rpe 798252 798959 - ribulose-phosphate 3-epimerase PMID: 10625676 best DB hits: BLAST: pir:G82052%3B ribulose-phosphate 3-epimerase VC2625 [imported] -%3B E%3D1e-42 gb:AAK03703.1%3B (AE006199) Dod [Pasteurella multocida]%3B E%3D1e-40 gb:AAF01048.1%3B AF189365_1 (AF189365) D-ribulose-5-phosphate%3B E%3D3e-40 COG: VC2625%3B COG0036 Pentose-5-phosphate-3-epimerase%3B E%3D1e-43 PFAM: PF00834%3B Ribulose-phosphate 3 epimerase%3B E%3D1.8e-85 gene gene836 http://www.ncbi.nlm.nih.gov/gene/?term=RB1561 RB1563 RB1563 RB1563 798934 799344 + DOF zinc finger protein PMID: 10617197 best DB hits: BLAST: gb:AAC79586.1%3B (AC005727) DOF zinc finger protein%3B E%3D0.43 gene gene837 http://www.ncbi.nlm.nih.gov/gene/?term=RB1563 RB1565 RB1565 RB1565 799322 799552 - hypothetical protein gene gene838 http://www.ncbi.nlm.nih.gov/gene/?term=RB1565 RB1566 RB1566 comQ comQ 799608 803093 - general secretory pathway protein D PMID: 10419967 best DB hits: BLAST: gb:AAK00351.1%3B AF329876_7 (AF329876) outer membrane protein%3B E%3D2e-10 embl:CAA32520.1%3B (X14336) gene IV product [Bacteriophage I2-2]%3B E%3D2e-08 pir:D82816%3B fimbrial assembly protein XF0373 [imported] - Xylella%3B E%3D4e-05 COG: XF0373%3B COG1450 General secretory pathway protein D%3B E%3D3e-06 PFAM: PF00263%3B Bacterial type II and III secretion%3B E%3D5.3e-20 gene gene839 http://www.ncbi.nlm.nih.gov/gene/?term=RB1566 RB1571 RB1571 dnlI dnlI 803159 804853 + ATP-dependent DNA ligase catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA gene gene840 http://www.ncbi.nlm.nih.gov/gene/?term=RB1571 RB1572 RB1572 RB1572 804850 804993 + hypothetical protein gene gene841 http://www.ncbi.nlm.nih.gov/gene/?term=RB1572 RB1573 RB1573 RB1573 804984 805094 - hypothetical protein gene gene842 http://www.ncbi.nlm.nih.gov/gene/?term=RB1573 RB1574 RB1574 sgbU sgbU 805112 806164 - hexulose-6-phosphate isomerase PMID: 8041620 best DB hits: BLAST: pir:S47803%3B hypothetical 33.7K protein (avtA-selB intergenic region)%3B E%3D8e-07 swissprot:P37679%3B SGBU_ECOLI HEXULOSE-6-PHOSPHATE%3B E%3D8e-07 swissprot:P39305%3B SGAU_ECOLI HEXULOSE-6-PHOSPHATE%3B E%3D1e-05 COG: sgbU%3B COG1082 Predicted endonucleases%3B E%3D7e-08 PFAM: PF01319%3B Cholesterol oxidase%3B E%3D0.042 gene gene843 http://www.ncbi.nlm.nih.gov/gene/?term=RB1574 RB1577 RB1577 helX helX 806289 808871 + ATP-dependent helicase PMID: 8688087 best DB hits: BLAST: pir:D75091%3B large helicase-related protein (lhr-2) PAB0744 -%3B E%3D1e-73 ref:NP_071281.1%3B large helicase-related protein (lhr-2)%3B E%3D4e-71 swissprot:Q57742%3B HELX_METJA ATP-DEPENDENT HELICASE%3B E%3D1e-70 COG: PAB0744%3B COG1201 Lhr-like helicases%3B E%3D1e-74 BS_yprA%3B COG1205 Distinct helicase with a unique C-terminal%3B E%3D5e-18 PFAM: PF00270%3B DEAD/DEAH box helicase%3B E%3D2.1e-16 PF00271%3B Helicase conserved C-terminal doma%3B E%3D5.5e-14 gene gene844 http://www.ncbi.nlm.nih.gov/gene/?term=RB1577 RB1578 RB1578 glnS glnS 808911 810716 + glutaminyl-tRNA synthetase catalyzes a two-step reaction%2C first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA gene gene845 http://www.ncbi.nlm.nih.gov/gene/?term=RB1578 RB1579 RB1579 RB1579 810888 812492 - thermostable carboxypeptidase 1 PMID: 7765282 best DB hits: BLAST: swissprot:P42663%3B CTAQ_THEAQ THERMOSTABLE CARBOXYPEPTIDASE 1%3B E%3D1e-105 swissprot:P50848%3B YPWA_BACSU HYPOTHETICAL 58.2 KDA PROTEIN IN%3B E%3D2e-90 gb:AAG20654.1%3B (AE005134) probable carboxypeptidase%3B Cxp%3B E%3D7e-90 COG: BS_ypwA%3B COG2317 Zn-dependent carboxypeptidases%3B E%3D2e-91 PFAM: PF02074%3B Carboxypeptidase Taq (M32) meta%3B E%3D2.1e-164 gene gene846 http://www.ncbi.nlm.nih.gov/gene/?term=RB1579 RB1581 RB1581 RB1581 812517 814265 - hypothetical protein gene gene847 http://www.ncbi.nlm.nih.gov/gene/?term=RB1581 RB1584 RB1584 hisD hisD 814354 815736 + histidinol dehydrogenase PMID: 9537320 best DB hits: BLAST: ddbj:BAB07301.1%3B (AP001519) histidinol dehydrogenase [Bacillus%3B E%3D4e-88 swissprot:O66976%3B HISX_AQUAE HISTIDINOL DEHYDROGENASE (HDH)%3B E%3D1e-87 gb:AAK05307.1%3B AE006353_6 (AE006353) histidinol dehydrogenase (EC%3B E%3D2e-85 COG: BH3582%3B COG0141 Histidinol dehydrogenase%3B E%3D4e-89 PFAM: PF00815%3B Histidinol dehydrogenase%3B E%3D2.7e-158 gene gene848 http://www.ncbi.nlm.nih.gov/gene/?term=RB1584 RB1586 RB1586 fabF fabF 815812 817197 + 3-oxoacyl-ACP synthase PMID: 8550484 best DB hits: BLAST: pir:T12022%3B 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41)%3B E%3D1e-50 pir:G81224%3B 3-oxoacyl-(acyl-carrier-protein) synthase II NMB0219%3B E%3D3e-48 pir:F81995%3B 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41)%3B E%3D7e-48 COG: PA2965%3B COG0304 3-oxoacyl-(acyl-carrier-protein) synthase I%3B E%3D1e-51 PFAM: PF00109%3B Beta-ketoacyl synthase%2C N-ter%3B E%3D2.3e-05 PF02801%3B Beta-ketoacyl synthase%2C C-ter%3B E%3D7.8e-51 gene gene849 http://www.ncbi.nlm.nih.gov/gene/?term=RB1586 RB1588 RB1588 RB1588 817362 817817 + acyl carrier protein PMID: 8759840 best DB hits: BLAST: gb:AAB68774.1%3B (U94886) hemolysin [Brachyspira hyodysenteriae]%3B E%3D4e-04 embl:CAC08813.1%3B (AJ279022) acyl carrier protein%3B E%3D0.053 pir:T11213%3B probable acyl carrier protein - Streptomyces glaucescens%3B E%3D0.067 gene gene850 http://www.ncbi.nlm.nih.gov/gene/?term=RB1588 RB159 RB159 RB159 81043 84024 + sensory transduction histidine kinase PMID: 11406410 best DB hits: BLAST: pir:S75136%3B sensory transduction histidine kinase slr2104 -%3B E%3D2e-69 pir:S75130%3B sensory transduction histidine kinase slr2098 -%3B E%3D4e-63 pir:E83443%3B probable sensorresponse regulator hybrid PA1611%3B E%3D8e-62 COG: VC1349_2%3B COG0642 Sensory transduction histidine kinases%3B E%3D2e-53 PFAM: PF00989%3B PAS domain%3B E%3D5.9e-05 PF00512%3B His Kinase A (phosphoacceptor)%3B E%3D4.2e-24 PF02518%3B Histidine kinase-%2C DNA gyrase B%3B E%3D4.1e-43 gene gene87 http://www.ncbi.nlm.nih.gov/gene/?term=RB159 RB1591 RB1591 crtI crtI 817929 819323 + phytoene dehydrogenase PMID: 2254247 best DB hits: BLAST: gb:AAF63149.1%3B AC011001_19 (AC011001) Similar to phytoene%3B E%3D7e-15 gb:AAG29233.1%3B AC079732_4 (AC079732) hypothetical protein%3B E%3D4e-12 ddbj:BAB05567.1%3B (AP001513) BH1848~~unknown conserved protein in%3B E%3D6e-11 COG: BH1848%3B COG1233 Phytoene dehydrogenase and related proteins%3B E%3D6e-12 VC0806%3B COG2509 Uncharacterized FAD-dependent dehydrogenases%3B E%3D0.001 DR0093%3B COG1233 Phytoene dehydrogenase and related proteins%3B E%3D0.006 PFAM: PF02032%3B Phytoene dehydrogenase related%3B E%3D6.5e-05 PF01494%3B FAD binding domain%3B E%3D0.13 PF00070%3B Pyridine nucleotide-disulphide%3B E%3D2.2e-06 gene gene851 http://www.ncbi.nlm.nih.gov/gene/?term=RB1591 RB1593 RB1593 icd icd 819486 821717 + isocitrate dehydrogenase PMID: 4149369 best DB hits: BLAST: swissprot:P16100%3B IDH_AZOVI ISOCITRATE DEHYDROGENASE [NADP]%3B E%3D0.0 pir:B81143%3B isocitrate dehydrogenase NMB0920 [imported] - Neisseria%3B E%3D0.0 pir:B82236%3B isocitrate dehydrogenase VC1141 [imported] - Vibrio%3B E%3D0.0 COG: NMB0920%3B COG2838 Monomeric isocitrate dehydrogenase%3B E%3D0.0 gene gene852 http://www.ncbi.nlm.nih.gov/gene/?term=RB1593 RB1594 RB1594 RB1594 821695 821865 - hypothetical protein gene gene853 http://www.ncbi.nlm.nih.gov/gene/?term=RB1594 RB1595 RB1595 hioM hioM 821937 822953 + hydroxyindole O-methyltransferase PMID: 1544900 best DB hits: BLAST: swissprot:P10950%3B HIOM_BOVIN HYDROXYINDOLE O-METHYLTRANSFERASE%3B E%3D1e-48 swissprot:Q92056%3B HIOM_CHICK HYDROXYINDOLE O-METHYLTRANSFERASE%3B E%3D3e-48 embl:CAA75675.1%3B (Y15521) start position 1 [Homo sapiens]%3B E%3D5e-47 COG: Rv0567%3B COG0500 SAM-dependent methyltransferases%3B E%3D7e-32 PFAM: PF01047%3B MarR family%3B E%3D0.1 PF01022%3B Bacterial regulatory protein%2C%3B E%3D0.82 PF00891%3B O-methyltransferase%3B E%3D7.5e-53 gene gene854 http://www.ncbi.nlm.nih.gov/gene/?term=RB1595 RB1597 RB1597 RB1597 823056 823589 - hypothetical protein PMID: 8037924 best DB hits: BLAST: swissprot:P30176%3B YBIA_ECOLI HYPOTHETICAL 18.7 KDA PROTEIN IN%3B E%3D3e-34 pir:A75416%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D4e-05 pir:B83074%3B conserved hypothetical protein PA4580 [imported] -%3B E%3D1e-04 COG: ybiA%3B COG3236 Uncharacterized BCR%3B E%3D3e-35 gene gene855 http://www.ncbi.nlm.nih.gov/gene/?term=RB1597 RB1599 RB1599 RB1599 823780 824676 + signal peptide gene gene856 http://www.ncbi.nlm.nih.gov/gene/?term=RB1599 RB16 RB16 RB16 7575 8069 - hypothetical protein gene gene7 http://www.ncbi.nlm.nih.gov/gene/?term=RB16 RB160 RB160 RB160 84027 84284 - hypothetical protein gene gene88 http://www.ncbi.nlm.nih.gov/gene/?term=RB160 RB1601 RB1601 RB1601 824636 824863 - hypothetical protein gene gene857 http://www.ncbi.nlm.nih.gov/gene/?term=RB1601 RB1602 RB1602 RB1602 824894 825262 - hypothetical protein gene gene858 http://www.ncbi.nlm.nih.gov/gene/?term=RB1602 RB1603 RB1603 RB1603 824944 825177 - hypothetical protein gene gene859 http://www.ncbi.nlm.nih.gov/gene/?term=RB1603 RB1604 RB1604 RB1604 825174 826373 - hypothetical protein best DB hits: BLAST: pir:D69820%3B hypothetical protein yhaZ - Bacillus subtilis -----%3B E%3D8e-39 embl:CAB40602.1%3B (AJ010140) DNA alkylation repair enzyme%3B E%3D2e-33 gb:AAK03834.1%3B (AE006212) unknown [Pasteurella multocida]%3B E%3D6e-17 gene gene860 http://www.ncbi.nlm.nih.gov/gene/?term=RB1604 RB1606 RB1606 RB1606 826325 827041 - O-6-methylguanine-DNA methyltransferase (ada) PMID: 8156986 best DB hits: BLAST: pir:H83380%3B O6-methylguanine-DNA methyltransferase PA2118 [imported]%3B E%3D9e-29 gb:AAA23413.1%3B (M10315) Ada polyprotein [Escherichia coli]%3B E%3D7e-26 pdb:1SFE%3B Ada O6-Methylguanine-Dna Methyltransferase From%3B E%3D7e-26 COG: PA2118_2%3B COG0350 Methylated DNA-protein cysteine methyltransferase%3B E%3D5e-29 PFAM: PF01035%3B 6-O-methylguanine DNA methyltr%3B E%3D3.9e-33 gene gene861 http://www.ncbi.nlm.nih.gov/gene/?term=RB1606 RB1608 RB1608 RB1608 827078 828247 - esterase PMID: 8843436 best DB hits: BLAST: embl:CAC16441.1%3B (AL450165) esterase [Streptomyces%3B E%3D2e-40 pir:A69744%3B beta-lactamase homolog ybbE - Bacillus subtilis -----%3B E%3D5e-37 embl:CAB94057.1%3B (AL358672) secreted protein.%3B E%3D3e-32 COG: BS_ybbE%3B COG1680 Beta-lactamase class C and other penicillin binding%3B E%3D5e-38 gene gene862 http://www.ncbi.nlm.nih.gov/gene/?term=RB1608 RB1609 RB1609 RB1609 828234 828545 + hypothetical protein gene gene863 http://www.ncbi.nlm.nih.gov/gene/?term=RB1609 RB161 RB161 RB161 84262 85518 + response regulator PMID: 7699720 best DB hits: BLAST: pir:G82211%3B response regulator VC1348 [imported] - Vibrio cholerae%3B E%3D4e-59 embl:CAB89843.1%3B (AJ251547) response regulator [Xanthomonas%3B E%3D2e-56 pir:S75132%3B sensory transduction system regulatory protein slr2100 -%3B E%3D1e-55 COG: VC1348_2%3B COG2206 HD-GYP domain%3B E%3D1e-42 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D1.1e-29 PF01966%3B HD domain%3B E%3D0.003 gene gene89 http://www.ncbi.nlm.nih.gov/gene/?term=RB161 RB1610 RB1610 aslA aslA 828556 830181 + arylsulfatase PMID: 7744061 best DB hits: BLAST: pir:S69336%3B arylsulfatase (EC 3.1.6.1) - Pseudomonas aeruginosa%3B E%3D4e-77 swissprot:P51691%3B ARS_PSEAE ARYLSULFATASE (ARYL-SULFATE%3B E%3D1e-76 gb:AAF71375.1%3B AF262989_2 (AF262989) arylsulfatase [Klebsiella%3B E%3D6e-57 COG: PA0183%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D9e-78 PFAM: PF00884%3B Sulfatase%3B E%3D3.2e-102 gene gene864 http://www.ncbi.nlm.nih.gov/gene/?term=RB1610 RB1611 RB1611 RB1611 830421 833492 - hypothetical protein best DB hits: PFAM: PF00882%3B Zinc dependent phospholipase C%3B E%3D0.41 gene gene865 http://www.ncbi.nlm.nih.gov/gene/?term=RB1611 RB1617 RB1617 RB1617 833623 834021 - hypothetical protein gene gene866 http://www.ncbi.nlm.nih.gov/gene/?term=RB1617 RB1618 RB1618 RB1618 833743 834036 + transcriptional regulator PMID: 8843436 best DB hits: BLAST: embl:CAB95808.1%3B (AL359949) large transcriptional%3B E%3D0.35 gene gene867 http://www.ncbi.nlm.nih.gov/gene/?term=RB1618 RB162 RB162 RB162 85677 86603 - SAM dependent methyltransferase best DB hits: BLAST: pir:F81675%3B conserved hypothetical protein TC0684 [imported] -%3B E%3D7e-30 pir:D72066%3B sam dependent methyltransferase - Chlamydophila%3B E%3D1e-27 pir:G71519%3B probable sam dependent methyltransferase - Chlamydia%3B E%3D3e-27 COG: CPn0531%3B COG1092 Predicted SAM-dependent methyltransferases%3B E%3D1e-28 gene gene90 http://www.ncbi.nlm.nih.gov/gene/?term=RB162 RB1621 RB1621 RB1621 834309 835361 - hypothetical protein PMID: 11756688 best DB hits: BLAST: pir:A82542%3B conserved hypothetical protein XF2574 [imported] -%3B E%3D0.028 pir:T29446%3B hypothetical protein - Streptomyces coelicolor -----%3B E%3D0.57 COG: XF2574%3B COG0671 Membrane-associated phospholipid phosphatase%3B E%3D0.003 PFAM: PF01569%3B PAP2 superfamily%3B E%3D0.00063 gene gene868 http://www.ncbi.nlm.nih.gov/gene/?term=RB1621 RB1624 RB1624 RB1624 835452 835745 - hypothetical protein gene gene869 http://www.ncbi.nlm.nih.gov/gene/?term=RB1624 RB1628 RB1628 RB1628 835894 836406 + hypothetical protein PMID: 10761919 best DB hits: BLAST: pir:G81831%3B probable integral membrane protein NMA2020 [imported] -%3B E%3D0.43 pir:F81195%3B conserved hypothetical protein NMB0465 [imported] -%3B E%3D0.55 gene gene870 http://www.ncbi.nlm.nih.gov/gene/?term=RB1628 RB1629 RB1629 glcK glcK 836521 837594 + glucokinase PMID: 9620975 best DB hits: BLAST: pir:T44787%3B glucokinase (EC 2.7.1.2) [imported] - Bacillus%3B E%3D3e-32 swissprot:P54495%3B GLK_BACSU GLUCOKINASE (GLUCOSE KINASE) -----%3B E%3D8e-32 ddbj:BAB04516.1%3B (AP001509) glucose kinase [Bacillus halodurans]%3B E%3D4e-30 COG: BS_glcK%3B COG1940 Transcriptional regulators%3B E%3D8e-33 PFAM: PF00370%3B FGGY family of carbohydrate kinases%3B E%3D0.071 PF00480%3B ROK family%3B E%3D3.3e-37 gene gene871 http://www.ncbi.nlm.nih.gov/gene/?term=RB1629 RB1630 RB1630 lepA lepA 837642 839456 + GTP-binding protein LepA binds to the ribosome on the universally-conserved alpha-sarcin loop gene gene872 http://www.ncbi.nlm.nih.gov/gene/?term=RB1630 RB1632 RB1632 RB1632 839673 840332 + hypothetical protein gene gene873 http://www.ncbi.nlm.nih.gov/gene/?term=RB1632 RB1633 RB1633 RB1633 840418 840678 - hypothetical protein gene gene874 http://www.ncbi.nlm.nih.gov/gene/?term=RB1633 RB1634 RB1634 RB1634 840611 841732 + hypothetical protein gene gene875 http://www.ncbi.nlm.nih.gov/gene/?term=RB1634 RB1636 RB1636 RB1636 841696 841806 - hypothetical protein gene gene876 http://www.ncbi.nlm.nih.gov/gene/?term=RB1636 RB1637 RB1637 RB1637 841858 842517 + glycosyl transferase PMID: 8843436 best DB hits: BLAST: embl:CAB61668.1%3B (AL133213) glycosyl transferase.%3B E%3D4e-32 embl:CAC15463.1%3B (AJ294477) polyprenol phosphate%3B E%3D7e-29 embl:CAB11300.1%3B (Z98604) hypothetical protein MLCB2052.02%3B E%3D1e-28 COG: Rv2051c_2%3B COG0463 Glycosyltransferases involved in cell wall%3B E%3D2e-29 PFAM: PF00535%3B Glycosyl transferase%3B E%3D1.6e-19 gene gene877 http://www.ncbi.nlm.nih.gov/gene/?term=RB1637 RB1638 RB1638 RB1638 842521 842718 + hypothetical protein gene gene878 http://www.ncbi.nlm.nih.gov/gene/?term=RB1638 RB1639 RB1639 RB1639 842623 844422 - monooxygenase PMID: 11823852 best DB hits: BLAST: gb:AAF54264.1%3B (AE003680) CG8032 gene product [Drosophila%3B E%3D0.033 embl:CAB59668.1%3B (AL132674) monooxygenase. [Streptomyces%3B E%3D0.19 pir:A83453%3B probable flavin-containing monooxygenase PA1538%3B E%3D0.44 PFAM: PF01494%3B FAD binding domain%3B E%3D0.0018 PF00070%3B Pyridine nucleotide-disulphide%3B E%3D0.013 PF01593%3B Flavin containing amine oxidase%3B E%3D0.25 gene gene879 http://www.ncbi.nlm.nih.gov/gene/?term=RB1639 RB164 RB164 RB164 87060 87560 + hypothetical protein gene gene92 http://www.ncbi.nlm.nih.gov/gene/?term=RB164 RB1641 RB1641 RB1641 844308 845327 - sodium/calcium antiporter PMID: 8905231 best DB hits: BLAST: pir:S74922%3B hypothetical protein slr0681 - Synechocystis sp. (strain%3B E%3D8e-56 pir:H82064%3B conserved hypothetical protein VC2522 [imported] -%3B E%3D2e-33 gb:AAK02512.1%3B (AE006079) unknown [Pasteurella multocida]%3B E%3D8e-33 COG: slr0681%3B COG0530 Ca2+/Na+ antiporter%3B E%3D7e-57 PFAM: PF01699%3B Sodium/calcium exchanger protein%3B E%3D6.8e-32 gene gene880 http://www.ncbi.nlm.nih.gov/gene/?term=RB1641 RB1644 RB1644 RB1644 845453 845824 - signal peptide gene gene881 http://www.ncbi.nlm.nih.gov/gene/?term=RB1644 RB1646 RB1646 RB1646 845881 846090 - hypothetical protein gene gene882 http://www.ncbi.nlm.nih.gov/gene/?term=RB1646 RB1648 RB1648 RB1648 846118 846423 - hypothetical protein gene gene883 http://www.ncbi.nlm.nih.gov/gene/?term=RB1648 RB1649 RB1649 RB1649 846528 846692 + hypothetical protein gene gene884 http://www.ncbi.nlm.nih.gov/gene/?term=RB1649 RB165 RB165 RB165 87557 88726 - transposase best DB hits: BLAST: gb:AAB58155.1%3B (U82621) hypothetical protein [Shigella flexneri]%3B E%3D2e-33 gb:AAF09022.1%3B (AF139596) unknown [Shigella flexneri]%3B E%3D2e-33 gb:AAG55688.1%3B AE005307_6 (AE005307) unknown in IS600 [Escherichia%3B E%3D2e-33 COG: tra5_g4%3B COG2801 transposase%3B E%3D2e-27 PFAM: PF01527%3B Transposase%3B E%3D4.8e-13 PF00665%3B Integrase core domain%3B E%3D3e-39 gene gene93 http://www.ncbi.nlm.nih.gov/gene/?term=RB165 RB1650 RB1650 RB1650 846661 847752 - signal peptide gene gene885 http://www.ncbi.nlm.nih.gov/gene/?term=RB1650 RB1651 RB1651 RB1651 847756 848766 + Fe-S oxidoreductase PMID: 8688087 best DB hits: BLAST: swissprot:Q57970%3B Y550_METJA HYPOTHETICAL PROTEIN MJ0550 -----%3B E%3D2e-04 gb:AAG20125.1%3B (AE005091) Vng1941c [Halobacterium sp. NRC-1]%3B E%3D0.006 gb:AAB90230.1%3B (AE001034) conserved hypothetical protein%3B E%3D0.15 COG: MJ0550%3B COG1244 Predicted Fe-S oxidoreductases%3B E%3D2e-05 gene gene886 http://www.ncbi.nlm.nih.gov/gene/?term=RB1651 RB1653 RB1653 prnC prnC 848744 850276 + halogenase PMID: 8843436 best DB hits: BLAST: gb:AAB97506.1%3B (U74493) halogenase PrnC [Pseudomonas fluorescens]%3B E%3D3e-22 gb:AAD46367.1%3B AF161185_2 (AF161185) PrnC [Myxococcus fulvus]%3B E%3D1e-21 gb:AAD46372.1%3B AF161186_3 (AF161186) PrnC [Burkholderia%3B E%3D2e-21 PFAM: PF01494%3B FAD binding domain%3B E%3D0.009 PF01224%3B FAD-dependent glycerol-3-phos%3B E%3D0.048 PF00070%3B Pyridine nucleotide-disulphid%3B E%3D0.0082 gene gene887 http://www.ncbi.nlm.nih.gov/gene/?term=RB1653 RB1656 RB1656 RB1656 850438 853065 - hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:C83287%3B hypothetical protein PA2870 [imported] - Pseudomonas%3B E%3D4e-29 pir:H70302%3B conserved hypothetical protein aq_035 - Aquifex aeolicus%3B E%3D1e-26 pir:A71678%3B probable response regulatory protein RP237 - Rickettsia%3B E%3D9e-24 COG: PA2870%3B COG2199 Diguanylate cyclase/phosphodiesterase domain 1%3B E%3D4e-30 TM1594%3B COG2199 Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF)%3B E%3D1e-22 PA0290_2%3B COG2199 Diguanylate cyclase/phosphodiesterase domain 1%3B E%3D1e-22 PFAM: PF00989%3B PAS domain%3B E%3D2.5e-05 PF00990%3B GGDEF domain%3B E%3D5.9e-52 PF01966%3B HD domain%3B E%3D1.2e-17 gene gene888 http://www.ncbi.nlm.nih.gov/gene/?term=RB1656 RB166 RB166 RB166 88683 88847 + hypothetical protein gene gene94 http://www.ncbi.nlm.nih.gov/gene/?term=RB166 RB1661 RB1661 RB1661 853319 876469 - hypothetical protein PMID: 96163873 best DB hits: BLAST: embl:CAA60685.1%3B (X87241) homologue of Drosophila Fat protein [Homo%3B E%3D3e-18 embl:CAB65271.1%3B (AJ250768) mouse fat 1 cadherin [Mus musculus]%3B E%3D1e-17 PFAM: PF00054%3B Laminin G domain%3B E%3D0.3 PF00354%3B Pentaxin family%3B E%3D3.9e-10 PF00059%3B Lectin C-type domain%3B E%3D0.00071 gene gene889 http://www.ncbi.nlm.nih.gov/gene/?term=RB1661 RB1677 RB1677 RB1677 876145 878211 + hypothetical protein best DB hits: PFAM: PF02321%3B Outer membrane efflux protein%3B E%3D5.9e-09 gene gene890 http://www.ncbi.nlm.nih.gov/gene/?term=RB1677 RB168 RB168 RB168 88901 89317 + transposase PMID: 8041625 best DB hits: BLAST: gb:AAB07489.2%3B (U66426) transposase [Acidithiobacillus%3B E%3D1e-21 gb:AAF60967.1%3B AF188737_2 (AF188737) transposase [Escherichia%3B E%3D1e-20 pir:A47041%3B probable transposase - Alcaligenes eutrophus insertion%3B E%3D1e-09 PFAM: PF01610%3B Transposase%3B E%3D3.9e-09 gene gene95 http://www.ncbi.nlm.nih.gov/gene/?term=RB168 RB1680 RB1680 czcB czcB 878180 879145 + cation efflux system (czcB-like) PMID: 9537320 best DB hits: BLAST: pir:C70415%3B cation efflux system (czcB-like) - Aquifex aeolicus%3B E%3D1e-10 gb:AAK03081.1%3B (AE006139) unknown [Pasteurella multocida]%3B E%3D7e-09 pir:B82357%3B conserved hypothetical protein VC0165 [imported] -%3B E%3D5e-08 COG: aq_1331%3B COG0845 Membrane-fusion protein%3B E%3D1e-11 ydhJ%3B COG1566 Multidrug resistance efflux pump%3B E%3D7e-06 XF0244%3B COG0845 Membrane-fusion protein%3B E%3D3e-05 PFAM: PF00364%3B Biotin-requiring enzyme%3B E%3D0.14 PF00529%3B HlyD family secretion protein%3B E%3D0.0021 gene gene891 http://www.ncbi.nlm.nih.gov/gene/?term=RB1680 RB1682 RB1682 RB1682 879132 879287 - hypothetical protein gene gene892 http://www.ncbi.nlm.nih.gov/gene/?term=RB1682 RB1685 RB1685 RB1685 879292 880590 + hypothetical protein PMID: 11466286 best DB hits: BLAST: ddbj:BAA96518.1%3B (AB044351) ORFE [Pseudomonas syringae]%3B E%3D9e-04 pir:D82709%3B colicin V secretion protein XF1216 [imported] - Xylella%3B E%3D0.002 pir:B83186%3B probable RND efflux membrane fusion protein precursor%3B E%3D0.003 COG: XF1216%3B COG0845 Membrane-fusion protein%3B E%3D2e-04 PA3136%3B COG1566 Multidrug resistance efflux pump%3B E%3D0.003 PA4374%3B COG0845 Membrane-fusion protein%3B E%3D0.007 PFAM: PF00529%3B HlyD family secretion protein%3B E%3D0.034 gene gene893 http://www.ncbi.nlm.nih.gov/gene/?term=RB1685 RB1688 RB1688 RB1688 880530 882947 + hypothetical protein PMID: 7542800 best DB hits: BLAST: pir:G64100%3B hypothetical protein HI0894 - Haemophilus influenzae%3B E%3D0.077 swissprot:Q57500%3B Y894_HAEIN HYPOTHETICAL PROTEIN HI0894 -----%3B E%3D0.077 COG: HIN0311%3B COG0845 Membrane-fusion protein%3B E%3D0.007 PFAM: PF02163%3B Sterol-regulatory element bind%3B E%3D0.011 PF00364%3B Biotin-requiring enzyme%3B E%3D0.088 gene gene894 http://www.ncbi.nlm.nih.gov/gene/?term=RB1688 RB1691 RB1691 RB1691 883025 885748 - signal peptide gene gene895 http://www.ncbi.nlm.nih.gov/gene/?term=RB1691 RB1695 RB1695 RB1695 885645 886064 - hypothetical protein gene gene896 http://www.ncbi.nlm.nih.gov/gene/?term=RB1695 RB1696 RB1696 RB1696 886018 887502 - dihydropteroate synthase PMID: 8688087 best DB hits: BLAST: swissprot:Q57571%3B Y107_METJA HYPOTHETICAL PROTEIN MJ0107 -----%3B E%3D5e-21 gb:AAB89833.1%3B (AE001006) dihydropteroate synthase [Archaeoglobus%3B E%3D1e-20 pir:H69099%3B conserved hypothetical protein MTH1741 -%3B E%3D1e-16 COG: MJ0107%3B COG0294 Dihydropteroate synthase%3B E%3D5e-22 gene gene897 http://www.ncbi.nlm.nih.gov/gene/?term=RB1696 RB1699 RB1699 RB1699 887580 888584 - signal peptide gene gene898 http://www.ncbi.nlm.nih.gov/gene/?term=RB1699 RB17 RB17 RB17 7757 8251 - hypothetical protein gene gene8 http://www.ncbi.nlm.nih.gov/gene/?term=RB17 RB170 RB170 RB170 89333 89623 + transposase PMID: 2824781 best DB hits: BLAST: gb:AAG58100.1%3B AE005527_3 (AE005527) unknown protein encoded by%3B E%3D0.002 gb:AAG53987.1%3B AF327445_1 (AF327445) transposase A%3B E%3D0.003 gb:AAF28119.1%3B AF153317_15 (AF153317) InsA [Shigella%3B E%3D0.007 COG: PA1937%3B COG2963 Transposase%3B E%3D0.004 PFAM: PF01381%3B Helix-turn-helix%3B E%3D0.53 PF01527%3B Transposase%3B E%3D6.1e-18 gene gene96 http://www.ncbi.nlm.nih.gov/gene/?term=RB170 RB1703 RB1703 RB1703 888722 889426 - maf protein PMID: 10567266 best DB hits: BLAST: gb:AAG58375.1%3B AE005552_5 (AE005552) orf%2C hypothetical protein%3B E%3D7e-18 swissprot:P25536%3B YHDE_ECOLI PROTEIN YHDE ----- pir: JQ1271%3B E%3D1e-17 gb:AAA58051.1%3B (U18997) ORF_f217%3B orfE of ECMRED%2C uses 2nd start%3B E%3D1e-17 COG: yhdE%3B COG0424 Nucleotide-binding protein implicated in inhibition of%3B E%3D1e-18 BH3033%3B COG0424 Nucleotide-binding protein implicated in inhibition%3B E%3D2e-18 yceF%3B COG0424 Nucleotide-binding protein implicated in inhibition of%3B E%3D4e-08 PFAM: PF02545%3B Maf-like protein%3B E%3D9.4e-36 gene gene899 http://www.ncbi.nlm.nih.gov/gene/?term=RB1703 RB1704 RB1704 RB1704 889423 889617 - hypothetical protein gene gene900 http://www.ncbi.nlm.nih.gov/gene/?term=RB1704 RB1705 RB1705 RB1705 889577 889921 + hypothetical protein gene gene901 http://www.ncbi.nlm.nih.gov/gene/?term=RB1705 RB1706 RB1706 dnaA dnaA 889863 891638 + chromosome replication initiator DnaA PMID: 8288535 best DB hits: BLAST: swissprot:P35887%3B DNAA_CAUCR CHROMOSOMAL REPLICATION INITIATOR%3B E%3D7e-35 gb:AAD42393.1%3B AF157493_1 (AF157493) chromosomal replication%3B E%3D2e-34 swissprot:P05648%3B DNAA_BACSU CHROMOSOMAL REPLICATION INITIATOR%3B E%3D4e-33 COG: BS_dnaA%3B COG0593 ATPase involved in DNA replication initiation%3B E%3D4e-34 PFAM: PF00004%3B ATPase associated with vari%3B E%3D0.014 PF00308%3B Bacterial dnaA protein%3B E%3D2.7e-42 gene gene902 http://www.ncbi.nlm.nih.gov/gene/?term=RB1706 RB1708 RB1708 dnaB dnaB 891742 893190 + replicative DNA helicase PMID: 7584024 best DB hits: BLAST: pir:T36598%3B probable replicative DNA helicase - Streptomyces%3B E%3D4e-86 pir:G75504%3B replicative DNA helicase - Deinococcus radiodurans%3B E%3D2e-83 gb:AAD19901.1%3B (AF100420) DnaB replication fork helicase [Thermus%3B E%3D1e-80 COG: DR0549%3B COG0305 Replicative DNA helicase%3B E%3D2e-84 PFAM: PF00772%3B DnaB-like helicase%3B E%3D2.9e-138 gene gene903 http://www.ncbi.nlm.nih.gov/gene/?term=RB1708 RB1709 RB1709 RB1709 893245 893643 - hypothetical protein gene gene904 http://www.ncbi.nlm.nih.gov/gene/?term=RB1709 RB171 RB171 RB171 89626 90504 + transposase best DB hits: BLAST: gb:AAA88919.1%3B (U13013) ORFB [Leptospira interrogans]%3B E%3D3e-47 gb:AAA88916.1%3B (U13012) ORFB [Leptospira interrogans]%3B E%3D1e-46 gb:AAC05649.1%3B (AF038931) probable transposase-related protein%3B E%3D1e-45 COG: DRB0019.2%3B COG2801 transposase%3B E%3D1e-35 PFAM: PF00665%3B Integrase core domain%3B E%3D4.8e-40 gene gene97 http://www.ncbi.nlm.nih.gov/gene/?term=RB171 RB1711 RB1711 RB1711 893669 894961 - two-component response regulator PMID: 10984043 best DB hits: BLAST: ddbj:BAA14000.1%3B (D89625) adenylate cyclase [Anabaena sp.]%3B E%3D3e-17 pir:T17197%3B adenylate cyclase homolog - Spirulina platensis -----%3B E%3D1e-16 embl:CAC01253.1%3B (AJ243734) hydrogenase transcriptional%3B E%3D1e-13 COG: PA2572%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D6e-13 VC1087_1%3B COG0784 CheY-like receiver domains%3B E%3D7e-10 VCA0142%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D3e-08 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D4.4e-17 gene gene905 http://www.ncbi.nlm.nih.gov/gene/?term=RB1711 RB1713 RB1713 RB1713 895046 895279 - hypothetical protein gene gene906 http://www.ncbi.nlm.nih.gov/gene/?term=RB1713 RB1714 RB1714 RB1714 895216 895536 + hypothetical protein gene gene907 http://www.ncbi.nlm.nih.gov/gene/?term=RB1714 RB1716 RB1716 RB1716 895557 895805 - hypothetical protein gene gene908 http://www.ncbi.nlm.nih.gov/gene/?term=RB1716 RB1717 RB1717 RB1717 895876 897501 - signal peptide PMID: 11214968 gene gene909 http://www.ncbi.nlm.nih.gov/gene/?term=RB1717 RB172 RB172 RB172 90494 91441 + transposase PMID: 10601203 best DB hits: BLAST: gb:AAF60967.1%3B AF188737_2 (AF188737) transposase [Escherichia%3B E%3D6e-41 gb:AAB07489.2%3B (U66426) transposase [Acidithiobacillus%3B E%3D1e-30 pir:A47041%3B probable transposase - Alcaligenes eutrophus insertion%3B E%3D4e-26 PFAM: PF01610%3B Transposase%3B E%3D4.2e-28 gene gene98 http://www.ncbi.nlm.nih.gov/gene/?term=RB172 RB1721 RB1721 RB1721 897548 897697 - hypothetical protein gene gene910 http://www.ncbi.nlm.nih.gov/gene/?term=RB1721 RB1722 RB1722 RB1722 897688 899643 + hypothetical protein PMID: 2402464 best DB hits: BLAST: swissprot:P23701%3B OM6_CHLPS 60 KDA OUTER MEMBRANE PROTEIN%3B E%3D2e-05 pir:B39439%3B 60K cysteine-rich outer membrane protein 1 precursor -%3B E%3D2e-05 pir:JC5204%3B 60K cysteine-rich outer membrane protein 2 precursor -%3B E%3D2e-05 gene gene911 http://www.ncbi.nlm.nih.gov/gene/?term=RB1722 RB1726 RB1726 RB1726 899633 899926 - hypothetical protein gene gene912 http://www.ncbi.nlm.nih.gov/gene/?term=RB1726 RB1728 RB1728 RB1728 899954 900811 + hypothetical protein PMID: 8867804 best DB hits: BLAST: swissprot:P39139%3B YXXB_BACSU HYPOTHETICAL 31.8 KD PROTEIN IN DEOR%3B E%3D6e-24 pir:S49453%3B hypothetical protein - Bacillus subtilis ----- embl:%3B E%3D4e-04 gene gene913 http://www.ncbi.nlm.nih.gov/gene/?term=RB1728 RB1729 RB1729 RB1729 900784 901146 - Rab-GDP dissociation inhibitor PMID: 9698324 best DB hits: BLAST: gb:AAC31910.1%3B (AF076291) Rab-GDP dissociation inhibitor [Gallus%3B E%3D0.081 embl:CAA52412.1%3B (X74401) rab GDI beta [Rattus norvegicus]%3B E%3D0.36 gb:AAA78786.1%3B (L36314) GDP dissociation inhibitor beta [Mus%3B E%3D0.36 gene gene914 http://www.ncbi.nlm.nih.gov/gene/?term=RB1729 RB1731 RB1731 RB1731 901162 902025 + ankyrin-like protein PMID: 10710307 best DB hits: BLAST: pir:D81118%3B conserved hypothetical protein ankyrin-related protein%3B E%3D3e-42 pir:C81903%3B hypothetical protein NMA1343 [imported] - Neisseria%3B E%3D9e-28 gb:AAF61702.1%3B AF222766_1 (AF222766) ankyrin 1 [Bos taurus]%3B E%3D1e-05 COG: NMB1133_2%3B COG0666 Ankyrin repeat proteins%3B E%3D7e-05 PFAM: PF00023%3B Ank repeat%3B E%3D0.0093 gene gene915 http://www.ncbi.nlm.nih.gov/gene/?term=RB1731 RB1732 RB1732 RB1732 902108 903019 + beta-alanine synthetase PMID: 10910347 best DB hits: BLAST: pir:H82556%3B beta-alanine synthetase XF2443 [imported] - Xylella%3B E%3D6e-16 pir:G75156%3B hypothetical protein PAB0277 - Pyrococcus abyssi (strain%3B E%3D3e-13 gb:AAF87102.1%3B AF284573_1 (AF284573) Nit protein 2 [Mus musculus]%3B E%3D4e-12 COG: XF2443%3B COG0388 Predicted amidohydrolase%3B E%3D6e-17 PFAM: PF00795%3B Carbon-nitrogen hydrolase%3B E%3D1.2e-40 gene gene916 http://www.ncbi.nlm.nih.gov/gene/?term=RB1732 RB1734 RB1734 RB1734 902989 903450 + hypothetical protein gene gene917 http://www.ncbi.nlm.nih.gov/gene/?term=RB1734 RB1736 RB1736 RB1736 903453 905321 - arylsulfatase PMID: 10336424 best DB hits: BLAST: gb:AAF30402.1%3B AF109924_1 (AF109924) sulfatase 1 precursor [Helix%3B E%3D2e-35 gb:AAF71377.1%3B AF262990_2 (AF262990) arylsulfatase [Klebsiella%3B E%3D2e-30 gb:AAF71375.1%3B AF262989_2 (AF262989) arylsulfatase [Klebsiella%3B E%3D3e-30 COG: ydeN%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D2e-23 yejM%3B COG3083 Predicted hydrolase of alkaline phosphatase%3B E%3D0.008 PFAM: PF00884%3B Sulfatase%3B E%3D5e-46 gene gene918 http://www.ncbi.nlm.nih.gov/gene/?term=RB1736 RB1739 RB1739 RB1739 905535 906599 + hypothetical protein PMID: 9634230 best DB hits: BLAST: pir:A70710%3B hypothetical protein Rv0790c - Mycobacterium%3B E%3D8e-07 pir:A69206%3B hypothetical protein MTH795 - Methanobacterium%3B E%3D2e-05 pir:D70818%3B hypothetical protein Rv1673c - Mycobacterium%3B E%3D2e-05 COG: Rv0790c%3B COG1305 transglutaminases%2C cysteine%3B E%3D8e-08 PFAM: PF01841%3B Transglutaminase-like superfam%3B E%3D9e-08 gene gene919 http://www.ncbi.nlm.nih.gov/gene/?term=RB1739 RB174 RB174 RB174 91448 91585 + hypothetical protein gene gene99 http://www.ncbi.nlm.nih.gov/gene/?term=RB174 RB1742 RB1742 pyrK pyrK 906681 907538 + dihydroorotate dehydrogenase electron transfer subunit PMID: 7516791 best DB hits: BLAST: swissprot:P46536%3B PYRK_BACCL DIHYDROOROTATE DEHYDROGENASE ELECTRON%3B E%3D1e-21 swissprot:Q58841%3B PYRK_METJA PROBABLE DIHYDROOROTATE DEHYDROGENASE%3B E%3D1e-17 swissprot:O27280%3B PYRK_METTH PROBABLE DIHYDROOROTATE DEHYDROGENASE%3B E%3D1e-16 COG: MJ1446%3B COG0543 2-polyprenylphenol hydroxylase and related%3B E%3D1e-18 PFAM: PF00970%3B Oxidoreductase FAD-binding doma%3B E%3D0.3 gene gene920 http://www.ncbi.nlm.nih.gov/gene/?term=RB1742 RB1743 RB1743 RB1743 907629 908654 - transcriptional regulator best DB hits: BLAST: pir:E82656%3B conserved hypothetical protein XF1630 [imported] -%3B E%3D5e-06 pir:T35300%3B probable transcriptional regulator - Streptomyces%3B E%3D3e-04 pir:D69900%3B conserved hypothetical protein yobV - Bacillus subtilis%3B E%3D0.003 COG: XF1630%3B COG2378 Predicted transcriptional regulator%3B E%3D5e-07 gene gene921 http://www.ncbi.nlm.nih.gov/gene/?term=RB1743 RB1746 RB1746 RB1746 908757 909608 - hypothetical protein gene gene922 http://www.ncbi.nlm.nih.gov/gene/?term=RB1746 RB1748 RB1748 RB1748 909562 909759 - hypothetical protein gene gene923 http://www.ncbi.nlm.nih.gov/gene/?term=RB1748 RB1749 RB1749 RB1749 909615 909824 - hypothetical protein gene gene924 http://www.ncbi.nlm.nih.gov/gene/?term=RB1749 RB175 RB175 RB175 91582 91956 + hypothetical protein gene gene100 http://www.ncbi.nlm.nih.gov/gene/?term=RB175 RB1750 RB1750 RB1750 909661 909837 + hypothetical protein gene gene925 http://www.ncbi.nlm.nih.gov/gene/?term=RB1750 RB1751 RB1751 RB1751 909821 910027 - hypothetical protein gene gene926 http://www.ncbi.nlm.nih.gov/gene/?term=RB1751 RB1753 RB1753 RB1753 910005 910466 + hypothetical protein PMID: 10960085 best DB hits: BLAST: embl:CAB95035.1%3B (AJ272497) orf4 [Bacillus anthracis]%3B E%3D9e-12 pir:B83036%3B probable bacterioferritin PA4880 [imported] -%3B E%3D0.005 pir:G82332%3B bacterioferritin VC0365 [imported] - Vibrio cholerae%3B E%3D0.019 COG: PA4880%3B COG2193 Bacterioferritin (cytochrome b1)%3B E%3D5e-04 gene gene927 http://www.ncbi.nlm.nih.gov/gene/?term=RB1753 RB1756 RB1756 RB1756 910614 911624 - hypothetical protein gene gene928 http://www.ncbi.nlm.nih.gov/gene/?term=RB1756 RB1758 RB1758 RB1758 911615 912637 - hypothetical protein best DB hits: PFAM: PF01351%3B Ribonuclease HII%3B E%3D0.11 gene gene929 http://www.ncbi.nlm.nih.gov/gene/?term=RB1758 RB1759 RB1759 RB1759 912640 913938 - phosphohydrolase PMID: 10567266 best DB hits: BLAST: pir:E72220%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D3e-39 pir:A75484%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D1e-37 embl:CAB94603.1%3B (AL359214) integral membrane protein%3B E%3D2e-35 COG: DR0719%3B COG2206 HD-GYP domain%3B E%3D1e-38 PFAM: PF01590%3B GAF domain%3B E%3D0.4 PF01966%3B HD domain%3B E%3D1.8e-15 gene gene930 http://www.ncbi.nlm.nih.gov/gene/?term=RB1759 RB1760 RB1760 RB1760 914023 915210 - hypothetical protein best DB hits: BLAST: gb:AAF28931.1%3B AF161371_1 (AF161371) HSPC253 [Homo sapiens]%3B E%3D0.33 gene gene931 http://www.ncbi.nlm.nih.gov/gene/?term=RB1760 RB1764 RB1764 RB1764 915251 916207 - transcriptional regulator best DB hits: BLAST: gb:AAG59798.1%3B AF292097_4 (AF292097) SenB [Leptospira interrogans]%3B E%3D4e-06 gb:AAC23717.1%3B (AF031161) transcriptional activator [Pseudomonas%3B E%3D0.004 pir:C82379%3B response regulator VCA1086 [imported] - Vibrio cholerae%3B E%3D0.005 COG: VCA1086_2%3B COG2208 Serine phosphatase RsbU%2C regulator of sigma%3B E%3D5e-04 TP0995%3B COG0664 cAMP-binding domains - Catabolite gene activator and%3B E%3D0.002 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D0.29 PF02518%3B Histidine kinase-%2C DNA gyrase B-%3B E%3D0.65 gene gene932 http://www.ncbi.nlm.nih.gov/gene/?term=RB1764 RB1766 RB1766 RB1766 916204 916317 - hypothetical protein gene gene933 http://www.ncbi.nlm.nih.gov/gene/?term=RB1766 RB1767 RB1767 RB1767 916336 919059 - hypothetical protein PMID: 2402463 best DB hits: BLAST: swissprot:P23700%3B OM6_CHLPN 60 KDA OUTER MEMBRANE PROTEIN%3B E%3D8e-23 gb:AAG60550.1%3B (AF240773) 60 kDa cysteine-rich membrane complex%3B E%3D3e-21 swissprot:P26758%3B OM6C_CHLTR 60 KDA OUTER MEMBRANE PROTEIN%2C%3B E%3D5e-21 gene gene934 http://www.ncbi.nlm.nih.gov/gene/?term=RB1767 RB177 RB177 RB177 92068 92493 - signal peptide PMID: 12024217 gene gene101 http://www.ncbi.nlm.nih.gov/gene/?term=RB177 RB1771 RB1771 RB1771 919273 919524 - hypothetical protein gene gene935 http://www.ncbi.nlm.nih.gov/gene/?term=RB1771 RB1773 RB1773 RB1773 919524 919760 - hypothetical protein gene gene936 http://www.ncbi.nlm.nih.gov/gene/?term=RB1773 RB1775 RB1775 RB1775 919757 919942 - hypothetical protein gene gene937 http://www.ncbi.nlm.nih.gov/gene/?term=RB1775 RB1776 RB1776 RB1776 919942 921096 + signal peptide best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene938 http://www.ncbi.nlm.nih.gov/gene/?term=RB1776 RB1778 RB1778 RB1778 921036 921245 - hypothetical protein gene gene939 http://www.ncbi.nlm.nih.gov/gene/?term=RB1778 RB1780 RB1780 RB1780 921306 923501 + hypothetical protein PMID: 12024217 best DB hits: BLAST: ddbj:BAB05615.1%3B (AP001513) BH1896~~unknown conserved protein%3B E%3D0.48 gene gene940 http://www.ncbi.nlm.nih.gov/gene/?term=RB1780 RB1783 RB1783 RB1783 923436 923951 - hypothetical protein gene gene941 http://www.ncbi.nlm.nih.gov/gene/?term=RB1783 RB1784 RB1784 ugdH ugdH 924070 925503 + UDP-glucose 6-dehydrogenase PMID: 8938413 best DB hits: BLAST: pir:T51527%3B UDP-glucose dehydrogenase-like protein - Arabidopsis%3B E%3D1e-155 ddbj:BAB02581.1%3B (AP001309) UDP-glucose dehydrogenase%3B E%3D1e-151 swissprot:Q96558%3B UGDH_SOYBN UDP-GLUCOSE 6-DEHYDROGENASE (UDP-GLC%3B E%3D1e-150 COG: aq_024%3B COG1004 Predicted UDP-glucose 6-dehydrogenase%3B E%3D2e-61 VC0918%3B COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase%3B E%3D1e-27 PA3540%3B COG1004 Predicted UDP-glucose 6-dehydrogenase%3B E%3D8e-26 PFAM: PF00984%3B UDP-glucose/GDP-mannose dehydro%3B E%3D2.6e-180 gene gene942 http://www.ncbi.nlm.nih.gov/gene/?term=RB1784 RB1785 RB1785 RB1785 925466 925621 + hypothetical protein gene gene943 http://www.ncbi.nlm.nih.gov/gene/?term=RB1785 RB1787 RB1787 RB1787 925686 925904 - hypothetical protein gene gene944 http://www.ncbi.nlm.nih.gov/gene/?term=RB1787 RB1789 RB1789 RB1789 925861 926592 + hypothetical protein PMID: 10484179 best DB hits: BLAST: ddbj:BAB05496.1%3B (AP001513) BH1777~~unknown conserved protein%3B E%3D1e-04 ddbj:BAA14001.1%3B (D89626) adenylate cyclase [Anabaena sp.]%3B E%3D0.001 pir:B70700%3B hypothetical protein Rv0020c - Mycobacterium%3B E%3D0.003 COG: BH1777_1%3B COG1716 FHA-domain-containing proteins%3B E%3D5e-05 PFAM: PF00498%3B FHA domain%3B E%3D4.6e-18 gene gene945 http://www.ncbi.nlm.nih.gov/gene/?term=RB1789 RB1790 RB1790 sigW sigW 926593 927168 + RNA polymerase sigma factor sigW PMID: 9274029 best DB hits: BLAST: pir:H70507%3B probable sigE protein - Mycobacterium tuberculosis%3B E%3D6e-14 gb:AAC45221.1%3B (U87307) extracytoplasmic function alternative%3B E%3D2e-13 gb:AAC45219.1%3B (U87308) extracytoplasmic function alternative%3B E%3D5e-13 COG: Rv1221%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D6e-15 PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D2.1e-09 gene gene946 http://www.ncbi.nlm.nih.gov/gene/?term=RB1790 RB1792 RB1792 RB1792 927261 927827 + hypothetical protein gene gene947 http://www.ncbi.nlm.nih.gov/gene/?term=RB1792 RB1793 RB1793 RB1793 927849 930413 + hypothetical protein PMID: 10360571 best DB hits: BLAST: pir:F72424%3B hypothetical protein - Thermotoga maritima (strain MSB8)%3B E%3D0.098 gene gene948 http://www.ncbi.nlm.nih.gov/gene/?term=RB1793 RB1796 RB1796 RB1796 930376 930534 + hypothetical protein gene gene949 http://www.ncbi.nlm.nih.gov/gene/?term=RB1796 RB1798 RB1798 moxR moxR 930673 931767 + methanol dehydrogenase regulator (moxR)-like protein PMID: 9403685 best DB hits: BLAST: pir:H70121%3B methanol dehydrogenase regulator (moxR) homolog - Lyme%3B E%3D4e-64 pir:D75008%3B methanol dehydrogenase regulatory protein (moxr-2)%3B E%3D5e-63 pir:C83106%3B conserved hypothetical protein PA4322 [imported] -%3B E%3D3e-62 COG: BB0176%3B COG0714 MoxR-like ATPases%3B E%3D4e-65 PFAM: PF00004%3B ATPase associated with va%3B E%3D0.0036 PF01078%3B Magnesium chelatase%2C subunit Chl%3B E%3D1.6e-08 gene gene950 http://www.ncbi.nlm.nih.gov/gene/?term=RB1798 RB18 RB18 RB18 7939 8433 - hypothetical protein gene gene9 http://www.ncbi.nlm.nih.gov/gene/?term=RB18 RB180 RB180 RB180 92655 93002 - hypothetical protein gene gene102 http://www.ncbi.nlm.nih.gov/gene/?term=RB180 RB1800 RB1800 RB1800 931757 932638 + hypothetical protein PMID: 9634230 best DB hits: BLAST: pir:G82493%3B conserved hypothetical protein VCA0174 [imported] -%3B E%3D3e-14 swissprot:P71761%3B YE80_MYCTU HYPOTHETICAL 34.3 KDA PROTEIN RV1480%3B E%3D8e-12 pir:G70121%3B conserved hypothetical protein BB0175 - Lyme disease%3B E%3D7e-11 COG: VCA0174%3B COG1721 Uncharacterized ACR%3B E%3D3e-15 PFAM: PF01882%3B Protein of unknown function DUF58%3B E%3D1.4e-24 gene gene951 http://www.ncbi.nlm.nih.gov/gene/?term=RB1800 RB1802 RB1802 RB1802 932817 935360 + hypothetical protein gene gene952 http://www.ncbi.nlm.nih.gov/gene/?term=RB1802 RB1805 RB1805 RB1805 935357 938212 + hypothetical protein best DB hits: PFAM: PF00092%3B von Willebrand factor type A domain%3B E%3D0.85 gene gene953 http://www.ncbi.nlm.nih.gov/gene/?term=RB1805 RB1809 RB1809 RB1809 938209 938361 - replicase PMID: 8376963 best DB hits: BLAST: ddbj:BAA61806.1%3B (AB010300) replicase [garlic virus A]%3B E%3D0.77 gene gene954 http://www.ncbi.nlm.nih.gov/gene/?term=RB1809 RB1814 RB1814 RB1814 938487 939221 - hypothetical protein gene gene955 http://www.ncbi.nlm.nih.gov/gene/?term=RB1814 RB1819 RB1819 galE galE 939064 940068 + udp-glucose 4-epimerase PMID: 9679194 best DB hits: BLAST: pir:D75143%3B udp-glucose 4-epimerase (gale-1) PAB2145 - Pyrococcus%3B E%3D8e-42 pir:A71183%3B probable UDP-glucose 4-epimerase - Pyrococcus horikoshii%3B E%3D3e-40 pir:T51252%3B dTDPglucose 4%2C6-dehydratase (EC 4.2.1.46) [imported] -%3B E%3D4e-37 COG: PAB2145%3B COG0451 Nucleoside-diphosphate-sugar epimerases%3B E%3D8e-43 BH3364%3B COG1088 dTDP-D-glucose 4%2C6-dehydratase%3B E%3D2e-26 TM0630%3B COG0451 Nucleoside-diphosphate-sugar epimerases%3B E%3D5e-26 PFAM: PF00056%3B lactate/malate dehydrogenase%2C NAD b%3B E%3D0.011 PF01370%3B NAD dependent epimerase/dehydratase%3B E%3D7.1e-43 gene gene956 http://www.ncbi.nlm.nih.gov/gene/?term=RB1819 RB182 RB182 RB182 93120 93563 - hypothetical protein gene gene103 http://www.ncbi.nlm.nih.gov/gene/?term=RB182 RB1821 RB1821 pknB pknB 940065 942473 + serine/threonine-protein kinase PMID: 8969512 best DB hits: BLAST: embl:CAA18685.1%3B (AL022602) serinethreonine protein%3B E%3D3e-23 pir:B70936%3B probable serinethreonine-specific protein kinase (EC%3B E%3D2e-22 swissprot:P54744%3B PKNB_MYCLE SERINETHREONINE-PROTEIN%3B E%3D6e-22 COG: Rv2176%3B COG0515 Serine/threonine protein kinases%3B E%3D2e-23 PFAM: PF00069%3B Protein kinase domain%3B E%3D9.4e-41 gene gene957 http://www.ncbi.nlm.nih.gov/gene/?term=RB1821 RB1825 RB1825 RB1825 942503 942652 - hypothetical protein gene gene958 http://www.ncbi.nlm.nih.gov/gene/?term=RB1825 RB1827 RB1827 RB1827 942742 943644 + hypothetical protein gene gene959 http://www.ncbi.nlm.nih.gov/gene/?term=RB1827 RB1828 RB1828 RB1828 943676 945511 + signal peptide gene gene960 http://www.ncbi.nlm.nih.gov/gene/?term=RB1828 RB183 RB183 RB183 93532 95316 - hypothetical protein PMID: 12093901 best DB hits: BLAST: gb:AAD51069.1%3B AF175716_1 (AF175716) immunoreactive 52kD antigen%3B E%3D0.045 pir:S75812%3B hypothetical protein slr1270 - Synechocystis sp. (strain%3B E%3D0.17 PFAM: PF02321%3B Outer membrane efflux protein%3B E%3D0.18 gene gene104 http://www.ncbi.nlm.nih.gov/gene/?term=RB183 RB1830 RB1830 RB1830 945498 945611 - hypothetical protein best DB hits: PFAM: PF01726%3B LexA DNA binding domain%3B E%3D0.85 gene gene961 http://www.ncbi.nlm.nih.gov/gene/?term=RB1830 RB1831 RB1831 NqrA NqrA 945722 947137 + Na(+)-translocating NADH-quinone reductase subunit A uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm gene gene962 http://www.ncbi.nlm.nih.gov/gene/?term=RB1831 RB1832 RB1832 nqrB nqrB 947143 948402 + Na(+)-translocating NADH-quinone reductase subunit B uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm gene gene963 http://www.ncbi.nlm.nih.gov/gene/?term=RB1832 RB1833 RB1833 nqrC nqrC 948389 949300 + Na(+)-translocating NADH-quinone reductase subunit C uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm gene gene964 http://www.ncbi.nlm.nih.gov/gene/?term=RB1833 RB1835 RB1835 nqrD nqrD 949304 949930 + Na(+)-translocating NADH-quinone reductase subunit D Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions%2C coupled with the transport of Na(+) ions from the cytoplasm to the periplasm gene gene965 http://www.ncbi.nlm.nih.gov/gene/?term=RB1835 RB1836 RB1836 nqrE nqrE 949934 950575 + Na(+)-translocating NADH-quinone reductase subunit E Part of the NQR complex which consists of NqrA%2C NqrB%2C NqrC%2C NqrD%2C NqrE and NqrF%3B NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions%2C coupled with the transport of Na(+) ions from the cytoplasm to the periplasm%3B NqrE is probably involved in the second step%2C the conversion of ubisemiquinone to ubiquinol. gene gene966 http://www.ncbi.nlm.nih.gov/gene/?term=RB1836 RB1837 RB1837 nqrF nqrF 950711 951970 + Na(+)-translocating NADH-quinone reductase subunit F uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm gene gene967 http://www.ncbi.nlm.nih.gov/gene/?term=RB1837 RB1838 RB1838 RB1838 951986 952102 + hypothetical protein gene gene968 http://www.ncbi.nlm.nih.gov/gene/?term=RB1838 RB1839 RB1839 apbE apbE 952068 953690 + thiamine biosynthesis lipoprotein apbE PMID: 7542800 best DB hits: BLAST: pir:A82094%3B thiamin biosynthesis lipoprotein ApbE VC2289 [imported]%3B E%3D3e-61 swissprot:P44550%3B APBE_HAEIN THIAMINE BIOSYNTHESIS LIPOPROTEIN%3B E%3D8e-52 gb:AAK03418.1%3B (AE006171) ApbE [Pasteurella multocida]%3B E%3D4e-51 COG: VC2289%3B COG1477 Membrane-associated lipoprotein involved in thiamine%3B E%3D3e-62 NMB0563%3B COG1477 Membrane-associated lipoprotein involved in%3B E%3D2e-46 apbE%3B COG1477 Membrane-associated lipoprotein involved in thiamine%3B E%3D8e-45 PFAM: PF02424%3B ApbE family%3B E%3D6.5e-89 gene gene969 http://www.ncbi.nlm.nih.gov/gene/?term=RB1839 RB1840 RB1840 hetI hetI 953801 954643 - phosphopantetheinyltransferase best DB hits: BLAST: gb:AAF19809.1%3B AF188287_1 (AF188287) MtaA [Stigmatella aurantiaca]%3B E%3D5e-17 pir:T00851%3B hypothetical protein T20F6.9 - Arabidopsis thaliana%3B E%3D2e-11 pir:E55210%3B hetI protein - Anabaena sp. (strain PCC 7120) -----%3B E%3D2e-11 COG: slr0495%3B COG2091 Phosphopantetheinyl transferase%3B E%3D3e-12 PFAM: PF01648%3B 4'-phosphopantetheinyl transferase s%3B E%3D7.5e-15 gene gene970 http://www.ncbi.nlm.nih.gov/gene/?term=RB1840 RB1843 RB1843 RB1843 954715 955110 + hypothetical protein gene gene971 http://www.ncbi.nlm.nih.gov/gene/?term=RB1843 RB1845 RB1845 RB1845 955212 955595 + signal peptide gene gene972 http://www.ncbi.nlm.nih.gov/gene/?term=RB1845 RB1849 RB1849 RB1849 955620 956096 + hypothetical protein gene gene973 http://www.ncbi.nlm.nih.gov/gene/?term=RB1849 RB185 RB185 RB185 94207 94812 + hypothetical protein gene gene105 http://www.ncbi.nlm.nih.gov/gene/?term=RB185 RB1854 RB1854 RB1854 956276 958387 - hypothetical protein best DB hits: BLAST: pir:T34929%3B hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces%3B E%3D5e-22 embl:CAB94634.1%3B (AL359215) secreted glycosyl hydrolase.%3B E%3D1e-12 pir:T35029%3B hypothetical protein SC4C6.21c - Streptomyces coelicolor%3B E%3D8e-05 gene gene974 http://www.ncbi.nlm.nih.gov/gene/?term=RB1854 RB1856 RB1856 RB1856 957840 959054 + delta-aminolevulinic acid dehydratase catalyzes the formation of porphobilinogen from 5-aminolevulinate gene gene975 http://www.ncbi.nlm.nih.gov/gene/?term=RB1856 RB1858 RB1858 RB1858 959080 959874 + hypothetical protein PMID: 12093901 best DB hits: BLAST: pir:H82553%3B 3-demethylubiquinone-9 3-methyltransferase XF2471%3B E%3D0.027 pir:T30158%3B hypothetical protein C37A2.6 - Caenorhabditis elegans%3B E%3D0.030 embl:CAA89660.1%3B (Z49629) ORF YJR129c [Saccharomyces cerevisiae]%3B E%3D0.76 COG: XF2471%3B COG2227%3B E%3D0.003 gene gene976 http://www.ncbi.nlm.nih.gov/gene/?term=RB1858 RB1859 RB1859 RB1859 959932 960306 + hypothetical protein gene gene977 http://www.ncbi.nlm.nih.gov/gene/?term=RB1859 RB1860 RB1860 RB1860 960361 960693 + signal peptide gene gene978 http://www.ncbi.nlm.nih.gov/gene/?term=RB1860 RB1862 RB1862 gntR gntR 960630 961037 + GntR family transcriptional regulator PMID: 9384377 best DB hits: BLAST: pir:G69999%3B transcriptional regulator GntR related protein ytrA -%3B E%3D8e-17 pir:D72336%3B transcriptional regulator%2C GntR family - Thermotoga%3B E%3D2e-14 pir:T36493%3B probable gntR-family transcriptional regulator -%3B E%3D9e-11 COG: BS_ytrA%3B COG1725 Predicted transcriptional regulators%3B E%3D8e-18 BS_yvoA%3B COG2188 Transcriptional regulators%3B E%3D8e-08 BH1164%3B COG1725 Predicted transcriptional regulators%3B E%3D8e-08 PFAM: PF00325%3B Bacterial regulatory proteins%2C crp f%3B E%3D0.49 PF00392%3B Bacterial regulatory proteins%2C gntR%3B E%3D9.4e-16 gene gene979 http://www.ncbi.nlm.nih.gov/gene/?term=RB1862 RB1866 RB1866 RB1866 961124 962131 + transport ATP-binding protein PMID: 10382966 best DB hits: BLAST: pir:F72742%3B probable transport ATP-binding protein APE0471 -%3B E%3D3e-34 pir:C72303%3B ABC transporter ATP-binding protein - Thermotoga%3B E%3D3e-34 gb:AAF81232.1%3B (AF263012) ABC transporter ATP binding protein%3B E%3D5e-34 COG: APE0471%3B COG1131 ABC-type multidrug transport system%2C ATPase%3B E%3D2e-35 PFAM: PF00448%3B SRP54-type protein%2C GTPase domain%3B E%3D0.16 PF00005%3B ABC transporter%3B E%3D1.4e-42 gene gene980 http://www.ncbi.nlm.nih.gov/gene/?term=RB1866 RB1868 RB1868 RB1868 962128 964635 + signal peptide gene gene981 http://www.ncbi.nlm.nih.gov/gene/?term=RB1868 RB187 RB187 RB187 95367 95474 - hypothetical protein gene gene106 http://www.ncbi.nlm.nih.gov/gene/?term=RB187 RB1870 RB1870 RB1870 964632 966032 + hypothetical protein gene gene982 http://www.ncbi.nlm.nih.gov/gene/?term=RB1870 RB1872 RB1872 RB1872 966053 966169 + hypothetical protein gene gene983 http://www.ncbi.nlm.nih.gov/gene/?term=RB1872 RB1874 RB1874 RB1874 966194 967177 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase PMID: 10360571 best DB hits: BLAST: pir:F72425%3B 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine%3B E%3D7e-12 ddbj:BAB03814.1%3B (AP001507)%3B E%3D2e-09 swissprot:P29251%3B FAS_PNECA FOLIC ACID SYNTHESIS PROTEIN%3B E%3D3e-08 COG: TM0041%3B COG0801 7%2C8-dihydro-6-hydroxymethylpterin-pyrophosphokinase%3B E%3D7e-13 YNL256w_2%3B COG0801%3B E%3D9e-05 NMB0745%3B COG0801 7%2C8-dihydro-6-hydroxymethylpterin-pyrophosphokinase%3B E%3D1e-04 PFAM: PF01288%3B 7%2C8-dihydro-6-hydroxymethylpterin-py%3B E%3D2.4e-24 gene gene984 http://www.ncbi.nlm.nih.gov/gene/?term=RB1874 RB1877 RB1877 RB1877 967185 967322 - hypothetical protein gene gene985 http://www.ncbi.nlm.nih.gov/gene/?term=RB1877 RB1878 RB1878 RB1878 967292 967732 - hypothetical protein gene gene986 http://www.ncbi.nlm.nih.gov/gene/?term=RB1878 RB1879 RB1879 RB1879 967725 967964 + hypothetical protein gene gene987 http://www.ncbi.nlm.nih.gov/gene/?term=RB1879 RB188 RB188 RB188 95487 96941 + membrane-fusion protein best DB hits: BLAST: pir:T31342%3B ragD protein - Bradyrhizobium japonicum ----- embl:%3B E%3D2e-20 pir:A83330%3B probable RND efflux membrane fusion protein precursor%3B E%3D2e-12 pir:D83099%3B probable RND efflux membrane fusion protein precursor%3B E%3D2e-12 COG: PA2528%3B COG0845 Membrane-fusion protein%3B E%3D2e-13 PFAM: PF00364%3B Biotin-requiring enzyme%3B E%3D0.18 PF00529%3B HlyD family secretion protein%3B E%3D0.05 gene gene107 http://www.ncbi.nlm.nih.gov/gene/?term=RB188 RB1880 RB1880 RB1880 967988 968215 - signal peptide gene gene988 http://www.ncbi.nlm.nih.gov/gene/?term=RB1880 RB1883 RB1883 gspA gspA 968293 970143 - general secretion pathway protein A PMID: 10952301 best DB hits: BLAST: pir:C82076%3B general secretion pathway protein A VC2445 [imported] -%3B E%3D8e-18 pir:H82326%3B MSHA biogenesis protein MshM VC0403 [imported] - Vibrio%3B E%3D2e-16 swissprot:P45754%3B GSPA_AERHY GENERAL SECRETION PATHWAY PROTEIN A%3B E%3D2e-14 COG: VC2445_1%3B COG3267 General secretion pathway protein A%3B E%3D7e-19 PFAM: PF00719%3B Inorganic pyrophosphatase%3B E%3D0.73 PF00004%3B ATPase associated with%3B E%3D0.011 gene gene989 http://www.ncbi.nlm.nih.gov/gene/?term=RB1883 RB1885 RB1885 RB1885 970284 971165 + menaquinone biosynthesis methlytransferase related protein best DB hits: BLAST: pir:A71001%3B hypothetical protein PH1305 - Pyrococcus horikoshii%3B E%3D4e-13 pir:G75136%3B menaquinone biosynthesis methlytransferase related%3B E%3D9e-12 ddbj:BAB07674.1%3B (AP001520) BH3955~~unknown conserved protein%3B E%3D2e-05 COG: PH1305%3B COG0500 SAM-dependent methyltransferases%3B E%3D4e-14 gene gene990 http://www.ncbi.nlm.nih.gov/gene/?term=RB1885 RB1887 RB1887 RB1887 971181 972647 + aldehyde dehydrogenase best DB hits: BLAST: pir:S27612%3B ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.-) -%3B E%3D2e-87 pir:S27619%3B ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.-) -%3B E%3D3e-86 pdb:1EYY%3B A Chain A%2C Crystal Structure Of The Nadp+ Dependent%3B E%3D8e-79 COG: PA2217%3B COG1012 NAD-dependent aldehyde dehydrogenases%3B E%3D9e-80 PFAM: PF00831%3B Ribosomal L29 protein%3B E%3D0.78 PF00171%3B Aldehyde dehydrogenase%3B E%3D2.9e-07 gene gene991 http://www.ncbi.nlm.nih.gov/gene/?term=RB1887 RB1889 RB1889 RB1889 972883 976134 + serine/threonine-protein kinase PMID: 8969512 best DB hits: BLAST: swissprot:P54744%3B PKNB_MYCLE SERINETHREONINE-PROTEIN%3B E%3D3e-40 swissprot:Q11053%3B PKNH_MYCTU PROBABLE SERINETHREONINE-PROTEIN%3B E%3D2e-38 swissprot:P71584%3B PKNB_MYCTU SERINETHREONINE-PROTEIN%3B E%3D2e-38 COG: Rv1266c%3B COG0515 Serine/threonine protein kinases%3B E%3D1e-39 PFAM: PF00069%3B Protein kinase domain%3B E%3D1.1e-41 PF00400%3B WD domain%2C G-beta repeat%3B E%3D0.0026 gene gene992 http://www.ncbi.nlm.nih.gov/gene/?term=RB1889 RB1890 RB1890 RB1890 976187 976312 - hypothetical protein gene gene993 http://www.ncbi.nlm.nih.gov/gene/?term=RB1890 RB1892 RB1892 RB1892 976341 979562 + serine/threonine protein kinase PMID: 10484179 best DB hits: BLAST: ddbj:BAB06223.1%3B (AP001515) serinethreonine protein kinase%3B E%3D2e-37 embl:CAB94054.1%3B (AL358672) serinethreonine-protein%3B E%3D2e-34 pir:H69878%3B probable protein kinase (EC 2.7.1.-) yloP - Bacillus%3B E%3D2e-33 COG: BH2504_1%3B COG0515 Serine/threonine protein kinases%3B E%3D2e-38 PFAM: PF00069%3B Protein kinase domain%3B E%3D5.1e-46 PF00400%3B WD domain%2C G-beta repeat%3B E%3D0.023 gene gene994 http://www.ncbi.nlm.nih.gov/gene/?term=RB1892 RB1893 RB1893 RB1893 979639 982911 + serine/threonine-protein kinase PMID: 9384377 best DB hits: BLAST: pir:H69878%3B probable protein kinase (EC 2.7.1.-) yloP - Bacillus%3B E%3D9e-29 ddbj:BAB06223.1%3B (AP001515) serinethreonine protein kinase%3B E%3D1e-28 swissprot:P54744%3B PKNB_MYCLE SERINETHREONINE-PROTEIN%3B E%3D6e-28 COG: BS_yloP_1%3B COG0515 Serine/threonine protein kinases%3B E%3D8e-30 PFAM: PF00069%3B Protein kinase domain%3B E%3D8.4e-42 PF00400%3B WD domain%2C G-beta repeat%3B E%3D0.3 gene gene995 http://www.ncbi.nlm.nih.gov/gene/?term=RB1893 RB1895 RB1895 RB1895 983055 985346 - DNA-binding protein SMUBP-2 PMID: 7665561 best DB hits: BLAST: swissprot:Q60560%3B SMB2_MESAU DNA-BINDING PROTEIN SMUBP-2%3B E%3D1e-100 gb:AAG28561.1%3B AF199411_1 (AF199411) antifreeze-enhancer binding%3B E%3D1e-99 gb:AAA70430.1%3B (L24544) DNA helicase [Homo sapiens]%3B E%3D1e-98 COG: aq_2057%3B COG1112 Superfamily I DNA and RNA helicases and helicase%3B E%3D1e-83 PFAM: PF00910%3B RNA helicase%3B E%3D0.63 PF00580%3B UvrD/REP helicase%3B E%3D0.54 PF00004%3B ATPase associated with%3B E%3D0.0017 gene gene996 http://www.ncbi.nlm.nih.gov/gene/?term=RB1895 RB1896 RB1896 RB1896 985295 985615 + hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:G83401%3B hypothetical protein PA1960 [imported] - Pseudomonas%3B E%3D9e-05 pir:B81972%3B probable integral membrane protein NMA0537 [imported]%3B E%3D0.014 pir:D81029%3B conserved hypothetical protein NMB1917 [imported] -%3B E%3D0.018 COG: PA1960_2%3B COG3326 Predicted membrane protein%3B E%3D4e-05 gene gene997 http://www.ncbi.nlm.nih.gov/gene/?term=RB1896 RB1897 RB1897 RB1897 985743 986441 - hypothetical protein gene gene998 http://www.ncbi.nlm.nih.gov/gene/?term=RB1897 RB1898 RB1898 aroB aroB 986429 987715 + 3-dehydroquinate synthase PMID: 9405209 best DB hits: BLAST: swissprot:P77980%3B AROB_SALTY 3-DEHYDROQUINATE SYNTHASE -----%3B E%3D4e-66 pir:B82053%3B 3-dehydroquinate synthase VC2628 [imported] - Vibrio%3B E%3D5e-65 ddbj:BAB10417.1%3B (AB011474) 3-dehydroquinate synthase-like%3B E%3D6e-63 COG: VC2628%3B COG0337 3-dehydroquinate synthetase%3B E%3D5e-66 PFAM: PF01761%3B 3-dehydroquinate synthase%3B E%3D4e-146 gene gene999 http://www.ncbi.nlm.nih.gov/gene/?term=RB1898 RB19 RB19 RB19 8303 8542 - hypothetical protein gene gene10 http://www.ncbi.nlm.nih.gov/gene/?term=RB19 RB1900 RB1900 RB1900 987820 988374 + NusG-like protein- transcription activator PMID: 9919671 best DB hits: BLAST: embl:CAA09920.1%3B (AJ012097) NusG-like protein [Myxococcus%3B E%3D3e-05 pir:G82255%3B probable transcription activator RfaH VC0990 [imported]%3B E%3D4e-04 embl:CAA10615.1%3B (AJ132239) transcriptional activator [Erwinia%3B E%3D0.019 COG: VC0990%3B COG0250 Transcription antiterminator%3B E%3D3e-05 gene gene1000 http://www.ncbi.nlm.nih.gov/gene/?term=RB1900 RB1901 RB1901 RB1901 988429 988833 + hypothetical protein gene gene1001 http://www.ncbi.nlm.nih.gov/gene/?term=RB1901 RB1902 RB1902 nirB nirB 988719 990776 + nitrite reductase [NAD(P)H] large subunit PMID: 2543955 best DB hits: BLAST: pir:S04349%3B nitrate reductase (NADH) (EC 1.6.6.1) - Escherichia coli%3B E%3D5e-75 swissprot:P08201%3B NIRB_ECOLI NITRITE REDUCTASE [NAD(P)H] LARGE%3B E%3D3e-69 gb:AAG58473.1%3B AE005559_9 (AE005559) nitrite reductase (NAD(P)H)%3B E%3D3e-69 COG: nirB%3B COG1251 NAD(P)H-nitrite reductase%3B E%3D3e-70 PH1509%3B COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases%3B E%3D3e-38 PFAM: PF00070%3B Pyridine nucleotide-disulphide oxid%3B E%3D1.5e-65 gene gene1002 http://www.ncbi.nlm.nih.gov/gene/?term=RB1902 RB1903 RB1903 RB1903 990721 992163 + NrfA- nitrite reduction protein PMID: 11248100 best DB hits: BLAST: gb:AAK02107.1%3B (AE006035) NrfA [Pasteurella multocida]%3B E%3D0.068 PFAM: PF02335%3B Cytochrome c552%3B E%3D0.21 gene gene1003 http://www.ncbi.nlm.nih.gov/gene/?term=RB1903 RB1908 RB1908 RB1908 992277 992900 + signal peptide gene gene1004 http://www.ncbi.nlm.nih.gov/gene/?term=RB1908 RB1909 RB1909 RB1909 992934 993434 + hemoglobin PMID: 3067078 best DB hits: BLAST: embl:CAC11135.1%3B (AJ245945) neuroglobin [Mus musculus]%3B E%3D1e-09 gb:AAG59898.1%3B (AF334379) neuroglobin [Rattus norvegicus]%3B E%3D1e-09 ddbj:BAA83959.1%3B (AB024563) HMP [Bacillus halodurans] -----%3B E%3D1e-08 COG: BH1058_1%3B COG1017 Hemoglobin-like flavoprotein%3B E%3D1e-09 PFAM: PF00042%3B Globin%3B E%3D3.9e-20 gene gene1005 http://www.ncbi.nlm.nih.gov/gene/?term=RB1909 RB191 RB191 RB191 96941 100087 + AcrB/AcrD/AcrF family cation efflux protein PMID: 8407802 best DB hits: BLAST: pir:S76433%3B cation efflux system protein czcA-2 - Synechocystis sp.%3B E%3D2e-86 ddbj:BAB07535.1%3B (AP001520) cation efflux system [Bacillus%3B E%3D1e-82 pir:F82263%3B probable multidrug resistance protein VC0914 [imported] -%3B E%3D1e-76 COG: sll0142%3B COG0841 Cation/multidrug efflux pump%3B E%3D1e-87 PFAM: PF00873%3B AcrB/AcrD/AcrF family%3B E%3D4.7e-88 gene gene108 http://www.ncbi.nlm.nih.gov/gene/?term=RB191 RB1910 RB1910 RB1910 993393 993764 - hypothetical protein gene gene1006 http://www.ncbi.nlm.nih.gov/gene/?term=RB1910 RB1912 RB1912 RB1912 993780 995861 - signal peptide gene gene1007 http://www.ncbi.nlm.nih.gov/gene/?term=RB1912 RB1917 RB1917 RB1917 995938 998040 - hypothetical protein PMID: 8905231 best DB hits: BLAST: swissprot:Q00808%3B HET1_PODAN VEGETATIBLE INCOMPATIBILITY PROTEIN%3B E%3D8e-17 swissprot:P49695%3B PKWA_THECU SERINETHREONINE-PROTEIN%3B E%3D9e-14 swissprot:P78706%3B RCO1_NEUCR TRANSCRIPTIONAL REPRESSOR RCO-1%3B E%3D6e-13 COG: sll1491%3B COG2319 WD40 repeat protein%3B E%3D9e-13 PFAM: PF00400%3B WD domain%2C G-beta repeat%3B E%3D0.0052 gene gene1008 http://www.ncbi.nlm.nih.gov/gene/?term=RB1917 RB192 RB192 RB192 100084 100254 - hypothetical protein gene gene109 http://www.ncbi.nlm.nih.gov/gene/?term=RB192 RB1920 RB1920 RB1920 998226 998522 - hypothetical protein gene gene1009 http://www.ncbi.nlm.nih.gov/gene/?term=RB1920 RB1922 RB1922 RB1922 998609 998917 - hypothetical protein gene gene1010 http://www.ncbi.nlm.nih.gov/gene/?term=RB1922 RB1923 RB1923 RB1923 998904 999107 + hypothetical protein gene gene1011 http://www.ncbi.nlm.nih.gov/gene/?term=RB1923 RB1924 RB1924 RB1924 999064 1012956 + fibrinogen-binding protein PMID: 99098700 best DB hits: BLAST: pir:T28679%3B fibrinogen-binding protein homolog - Staphylococcus aureus%3B E%3D6e-11 gb:AAF72509.1%3B AF245041_1 (AF245041) cell-surface adhesin%3B E%3D2e-09 gb:AAF76874.1%3B (AF246145) unknown [uncultured soil microbe%3B E%3D5e-07 COG: sll0656_1%3B COG3204 Uncharacterized BCR%3B E%3D9e-05 PFAM: PF00028%3B Cadherin domain%3B E%3D0.88 PF00404%3B Dockerin type I repeat%3B E%3D0.32 gene gene1012 http://www.ncbi.nlm.nih.gov/gene/?term=RB1924 RB193 RB193 RB193 100235 100909 - signal peptide gene gene110 http://www.ncbi.nlm.nih.gov/gene/?term=RB193 RB1930 RB1930 RB1930 1012991 1013539 + signal peptide gene gene1013 http://www.ncbi.nlm.nih.gov/gene/?term=RB1930 RB1931 RB1931 RB1931 1013625 1013831 - hypothetical protein gene gene1014 http://www.ncbi.nlm.nih.gov/gene/?term=RB1931 RB1932 RB1932 RB1932 1013853 1014026 + hypothetical protein gene gene1015 http://www.ncbi.nlm.nih.gov/gene/?term=RB1932 RB1934 RB1934 RB1934 1014051 1019531 + alkaline phosphatase PMID: 1712356 best DB hits: BLAST: pir:A47026%3B alkaline phosphatase%2C 145K - Synechococcus sp. (strain PCC%3B E%3D0.0 pir:S74916%3B alkaline phosphatase - Synechocystis sp. (strain PCC 6803)%3B E%3D1e-108 pir:A69809%3B probable multifunctional phosphoesterase (EC 3.1.-.-) yfkN%3B E%3D5e-22 COG: sll0654_2%3B COG0737 5'-nucleotidase/2'%2C3'-cyclic phosphodiesterase%3B E%3D8e-99 DRA0018%3B COG0737 5'-nucleotidase/2'%2C3'-cyclic phosphodiesterase and%3B E%3D1e-22 BS_yfkN_2%3B COG0737 5'-nucleotidase/2'%2C3'-cyclic phosphodiesterase%3B E%3D4e-22 PFAM: PF01009%3B 5'-nucleotidase%2C catalytic do%3B E%3D1e-32 PF02872%3B 5'-nucleotidase%2C C-terminal d%3B E%3D3.9e-38 PF00404%3B Dockerin type I repeat%3B E%3D0.0061 gene gene1016 http://www.ncbi.nlm.nih.gov/gene/?term=RB1934 RB1935 RB1935 RB1935 1019601 1019741 + hypothetical protein gene gene1017 http://www.ncbi.nlm.nih.gov/gene/?term=RB1935 RB1936 RB1936 RB1936 1019641 1022700 + thioredoxin PMID: 7632918 best DB hits: BLAST: swissprot:P80028%3B THIH_CHLRE THIOREDOXIN H-TYPE (TRX-H)%3B E%3D0.078 pdb:1TOF%3B Thioredoxin H (Oxidized Form)%2C Nmr%2C 23 Structures%3B E%3D0.078 gb:AAF19044.1%3B (L08896) thioredoxin [Mycoplasma gallisepticum]%3B E%3D0.22 PFAM: PF01835%3B Alpha-2-macroglobulin family N-termi%3B E%3D0.4 PF00085%3B Thioredoxin%3B E%3D0.18 gene gene1018 http://www.ncbi.nlm.nih.gov/gene/?term=RB1936 RB1937 RB1937 RB1937 1022707 1022820 + hypothetical protein gene gene1019 http://www.ncbi.nlm.nih.gov/gene/?term=RB1937 RB1939 RB1939 RB1939 1022855 1024363 - oxidoreductase PMID: 9353932 best DB hits: BLAST: ddbj:BAB05939.1%3B (AP001514) dehydrogenase [Bacillus halodurans]%3B E%3D2e-07 swissprot:P40332%3B YISS_BACSU HYPOTHETICAL 37.5 KD PROTEIN IN%3B E%3D6e-06 pir:B72359%3B lipopolysaccharide biosynthesis protein BplA -%3B E%3D1e-05 COG: BH2220%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D2e-08 PFAM: PF01408%3B Oxidoreductase%2C NAD-bindi%3B E%3D5e-14 gene gene1020 http://www.ncbi.nlm.nih.gov/gene/?term=RB1939 RB1942 RB1942 RB1942 1024508 1025485 + signal peptide gene gene1021 http://www.ncbi.nlm.nih.gov/gene/?term=RB1942 RB1946 RB1946 RB1946 1025731 1026966 - signal peptide gene gene1022 http://www.ncbi.nlm.nih.gov/gene/?term=RB1946 RB195 RB195 oprO oprO 101008 102708 - polyphosphate-selective porin O PMID: 3017428 best DB hits: BLAST: pir:D82740%3B polyphosphate-selective porin O XF0975 [imported] -%3B E%3D2e-09 pir:A82820%3B porin O precursor XF0321 [imported] - Xylella fastidiosa%3B E%3D1e-04 swissprot:P05695%3B PORP_PSEAE PORIN P PRECURSOR (OUTER MEMBRANE%3B E%3D9e-04 gene gene111 http://www.ncbi.nlm.nih.gov/gene/?term=RB195 RB1950 RB1950 RB1950 1026986 1028932 - signal peptide gene gene1023 http://www.ncbi.nlm.nih.gov/gene/?term=RB1950 RB1954 RB1954 RB1954 1028985 1031483 - polyketide synthase best DB hits: BLAST: pir:T30283%3B polyketide synthase - Streptomyces sp. (strain MA6548)%3B E%3D0.11 gb:AAF86396.1%3B AF235504_17 (AF235504) FkbA [Streptomyces%3B E%3D0.11 pir:T30228%3B polyketide synthase - Streptomyces hygroscopicus -----%3B E%3D0.12 gene gene1024 http://www.ncbi.nlm.nih.gov/gene/?term=RB1954 RB1958 RB1958 RB1958 1031656 1033554 - hypothetical protein PMID: 8843436 best DB hits: BLAST: embl:CAB59500.1%3B (AL132648) hypothetical protein SCI41.30c%3B E%3D5e-16 pir:C70512%3B hypothetical protein Rv2112c - Mycobacterium%3B E%3D1e-13 gb:AAC45734.1%3B (U26422) ORF6(2)%3B similar to ORF6(1) of%3B E%3D3e-13 gene gene1025 http://www.ncbi.nlm.nih.gov/gene/?term=RB1958 RB1961 RB1961 RB1961 1033791 1034144 + hypothetical protein gene gene1026 http://www.ncbi.nlm.nih.gov/gene/?term=RB1961 RB1964 RB1964 rpoA rpoA 1034475 1035977 + DNA-directed RNA polymerase alpha chain PMID: 9835038 best DB hits: BLAST: swissprot:O50634%3B RPOA_BACHD DNA-DIRECTED RNA POLYMERASE ALPHA%3B E%3D2e-09 swissprot:Q9Z3E7%3B RPOA_XANCP DNA-DIRECTED RNA POLYMERASE ALPHA%3B E%3D4e-09 gb:AAD00325.2%3B (U79735) RNA polymerase ALPHA subunit [Xanthomonas%3B E%3D4e-09 COG: BH0162%3B COG0202 DNA-directed RNA polymerase alpha subunit/40 kD%3B E%3D2e-10 PFAM: PF00515%3B TPR Domain%3B E%3D0.87 PF01000%3B Bacterial RNA polymerase%2C alpha%3B E%3D6.5e-12 gene gene1028 http://www.ncbi.nlm.nih.gov/gene/?term=RB1964 RB197 RB197 RB197 102804 102965 + hypothetical protein gene gene112 http://www.ncbi.nlm.nih.gov/gene/?term=RB197 RB1970 RB1970 tgt tgt 1035983 1037101 + queuine tRNA-ribosyltransferase PMID: 7665516 best DB hits: BLAST: pir:T46898%3B queuine tRNA-ribosyltransferase (EC 2.4.2.29)%3B E%3D2e-98 gb:AAA27705.1%3B (L33777) tRNA guanine transglycosylase [Zymomonas%3B E%3D2e-98 swissprot:P28720%3B TGT_ZYMMO QUEUINE TRNA-RIBOSYLTRANSFERASE%3B E%3D2e-98 COG: PA3823%3B COG0343 Queuine/archaeosine tRNA-ribosyltransferase%3B E%3D6e-99 PFAM: PF01702%3B Queuine tRNA-ribosyltransferase%3B E%3D1.2e-118 gene gene1029 http://www.ncbi.nlm.nih.gov/gene/?term=RB1970 RB1972 RB1972 RB1972 1037222 1038496 - hypothetical protein PMID: 9384377 best DB hits: BLAST: pir:A70029%3B hypothetical protein yvaX - Bacillus subtilis -----%3B E%3D4e-04 swissprot:Q90805%3B CNG1_CHICK CYCLIC NUCLEOTIDE GATED CHANNEL%2C CONE%3B E%3D0.52 gene gene1030 http://www.ncbi.nlm.nih.gov/gene/?term=RB1972 RB1974 RB1974 RB1974 1038493 1039470 - hypothetical protein gene gene1031 http://www.ncbi.nlm.nih.gov/gene/?term=RB1974 RB1977 RB1977 RB1977 1039488 1040645 + cleavage and polyadenylation specifity factor protein PMID: 9679194 best DB hits: BLAST: gb:AAF55578.1%3B (AE003723) CG7698 gene product [Drosophila%3B E%3D3e-09 pir:E71119%3B hypothetical protein PH0724 - Pyrococcus horikoshii%3B E%3D1e-05 gb:AAF19420.1%3B AF203969_1 (AF203969) cleavage and polyadenylation%3B E%3D3e-05 COG: PH0724%3B COG1236 Predicted exonuclease of the beta-lactamase fold%3B E%3D1e-06 PH1404%3B COG1782 Predicted metal-dependent RNase%2C consists of a%3B E%3D0.001 VC0264%3B COG1236 Predicted exonuclease of the beta-lactamase fold%3B E%3D0.002 PFAM: PF00753%3B Metallo-beta-lactamase superfamil%3B E%3D0.23 gene gene1032 http://www.ncbi.nlm.nih.gov/gene/?term=RB1977 RB1979 RB1979 RB1979 1040854 1043910 + signal peptide best DB hits: PFAM: PF00242%3B DNA polymerase (viral) N-term%3B E%3D0.23 gene gene1033 http://www.ncbi.nlm.nih.gov/gene/?term=RB1979 RB198 RB198 RB198 102935 104761 - N-acetylgalactosamine-6-sulfatase PMID: 2303452 best DB hits: BLAST: gb:AAF49302.1%3B (AE003522) CG5584 gene product [Drosophila%3B E%3D3e-35 gb:AAF49287.1%3B (AE003522) CG7402 gene product [Drosophila%3B E%3D2e-34 gb:AAF30402.1%3B AF109924_1 (AF109924) sulfatase 1 precursor [Helix%3B E%3D1e-33 COG: ydeN%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D6e-28 BS_yfnI%3B COG1368 Phosphoglycerol transferase and related proteins%2C%3B E%3D3e-07 VNG0061C%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D2e-04 PFAM: PF00884%3B Sulfatase%3B E%3D1.5e-40 gene gene113 http://www.ncbi.nlm.nih.gov/gene/?term=RB198 RB1984 RB1984 RB1984 1043987 1044448 - hypothetical protein gene gene1034 http://www.ncbi.nlm.nih.gov/gene/?term=RB1984 RB1988 RB1988 gdhP gdhP 1044541 1048065 + glucose dehydrogenase-B [pyrroloquinoline-quinone] [precursor] PMID: 2671663 best DB hits: BLAST: swissprot:P13650%3B DHGB_ACICA GLUCOSE DEHYDROGENASE-B%3B E%3D0.12 pdb:1CRU%3B B Chain B%2C Soluble Quinoprotein Glucose Dehydrogenase%3B E%3D0.12 pir:C69050%3B phycocyanin alpha phycocyanobilin lyase CpcE -%3B E%3D0.19 gene gene1035 http://www.ncbi.nlm.nih.gov/gene/?term=RB1988 RB1991 RB1991 RB1991 1048157 1048672 + signal peptide gene gene1036 http://www.ncbi.nlm.nih.gov/gene/?term=RB1991 RB1992 RB1992 RB1992 1048704 1049129 + PhnB protein PMID: 7610040 best DB hits: BLAST: swissprot:P16681%3B PHNB_ECOLI PHNB PROTEIN ----- pir: C35718%3B E%3D7e-13 gb:AAG59306.1%3B AE005643_13 (AE005643) phnB gene product%3B E%3D8e-13 pir:B83475%3B hypothetical protein PA1353 [imported] - Pseudomonas%3B E%3D4e-12 COG: phnB%3B COG2764 Uncharacterized BCR%3B E%3D7e-14 gene gene1037 http://www.ncbi.nlm.nih.gov/gene/?term=RB1992 RB1993 RB1993 papS papS 1049204 1050487 - [cytidine(C)-cytidine(C)-adenosine (A)]-adding enzyme PMID: 10192388 best DB hits: BLAST: pir:E72028%3B poly A polymerase - Chlamydophila pneumoniae (strains%3B E%3D9e-41 pir:B81744%3B poly(A) polymerase TC0077 [imported] -%3B E%3D3e-40 pir:A71481%3B probable poly A polymerase - Chlamydia trachomatis%3B E%3D5e-40 COG: CPn0845%3B COG0617 tRNA nucleotidyltransferase/poly(A) polymerase%3B E%3D9e-42 PFAM: PF01743%3B Poly A polymerase%3B E%3D2.6e-50 gene gene1038 http://www.ncbi.nlm.nih.gov/gene/?term=RB1993 RB1994 RB1994 RB1994 1050487 1051065 + hypothetical protein gene gene1039 http://www.ncbi.nlm.nih.gov/gene/?term=RB1994 RB1995 RB1995 RB1995 1050518 1051123 - hypothetical protein gene gene1040 http://www.ncbi.nlm.nih.gov/gene/?term=RB1995 RB1998 RB1998 ppdK ppdK 1051251 1053923 + pyruvate phosphate dikinase catalyzes the formation of phosphoenolpyruvate from pyruvate gene gene1041 http://www.ncbi.nlm.nih.gov/gene/?term=RB1998 RB1999 RB1999 RB1999 1053955 1054068 + hypothetical protein gene gene1042 http://www.ncbi.nlm.nih.gov/gene/?term=RB1999 RB2 RB2 RB2 3 182 - signal peptide gene gene0 http://www.ncbi.nlm.nih.gov/gene/?term=RB2 RB20 RB20 RB20 8570 10894 - hypothetical protein PMID: 2506434 best DB hits: BLAST: pir:B32491%3B myosin heavy chain 2%2C muscle - fruit fly (Drosophila%3B E%3D3e-09 pir:A32491%3B myosin heavy chain 1%2C muscle - fruit fly (Drosophila%3B E%3D3e-09 swissprot:P05661%3B MYSA_DROME MYOSIN HEAVY CHAIN%2C MUSCLE%3B E%3D4e-09 COG: VNG0342G%3B COG1196 Chromosome segregation ATPases%3B E%3D5e-05 aefA%3B COG3264 Small-conductance mechanosensitive channel%3B E%3D9e-04 Ta0787%3B COG1196 Chromosome segregation ATPases%3B E%3D0.002 PFAM: PF00038%3B Intermediate filament protein%3B E%3D0.87 gene gene11 http://www.ncbi.nlm.nih.gov/gene/?term=RB20 RB200 RB200 RB200 104925 106544 - mucin-desulfating sulfatase (N-acetylglucosamine-6-sulfatase) PMID: 10809675 best DB hits: BLAST: gb:AAF72520.1%3B AF248951_1 (AF248951) mucin-desulfating sulfatase%3B E%3D1e-83 gb:AAG58881.1%3B AE005599_13 (AE005599) sulfatase%3B E%3D3e-31 swissprot:P31447%3B YIDJ_ECOLI SULFATASE YIDJ -----%3B E%3D5e-31 COG: yidJ%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D5e-32 yejM%3B COG3083 Predicted hydrolase of alkaline phosphatase%3B E%3D5e-05 HI1246%3B COG1368 Phosphoglycerol transferase and related proteins%2C%3B E%3D3e-04 PFAM: PF00884%3B Sulfatase%3B E%3D1.8e-37 gene gene114 http://www.ncbi.nlm.nih.gov/gene/?term=RB200 RB2000 RB2000 RB2000 1054072 1054248 + hypothetical protein gene gene1043 http://www.ncbi.nlm.nih.gov/gene/?term=RB2000 RB2001 RB2001 RB2001 1054294 1055706 + glycosyltransferase PMID: 11371519 best DB hits: BLAST: pir:G69146%3B capsular polysaccharide biosynthesis protein -%3B E%3D2e-10 pir:E72354%3B probable hexosyltransferase (EC 2.4.1.-) TM0622 -%3B E%3D9e-10 pir:T44601%3B probable glycosyltransferase [imported] - Rhizobium%3B E%3D5e-08 COG: MTH362%3B COG0438 Predicted glycosyltransferases%3B E%3D2e-11 PFAM: PF00534%3B Glycosyl transferases group 1%3B E%3D1.3e-18 gene gene1044 http://www.ncbi.nlm.nih.gov/gene/?term=RB2001 RB2002 RB2002 RB2002 1055737 1055970 + hypothetical protein gene gene1045 http://www.ncbi.nlm.nih.gov/gene/?term=RB2002 RB2003 RB2003 RB2003 1056010 1056846 + signal peptide gene gene1046 http://www.ncbi.nlm.nih.gov/gene/?term=RB2003 RB2006 RB2006 RB2006 1056824 1057030 + hypothetical protein gene gene1047 http://www.ncbi.nlm.nih.gov/gene/?term=RB2006 RB2007 RB2007 RB2007 1056967 1057197 - hypothetical protein gene gene1048 http://www.ncbi.nlm.nih.gov/gene/?term=RB2007 RB2008 RB2008 RB2008 1057302 1058660 - signal-transducing histidine kinase PMID: 9389475 best DB hits: BLAST: gb:AAB89763.1%3B (AE001000) signal-transducing histidine kinase%3B E%3D4e-29 embl:CAB62662.1%3B (AL133422) two-component sensor%3B E%3D9e-24 swissprot:Q9R6X3%3B PHYB_ANASP CYANOBACTERIAL PHYTOCHROME B -----%3B E%3D9e-22 COG: DR2419_2%3B COG0642 Sensory transduction histidine kinases%3B E%3D3e-21 PFAM: PF00785%3B PAC motif%3B E%3D7.7e-10 PF00512%3B His Kinase A (phosphoacceptor) doma%3B E%3D7.1e-09 PF02518%3B Histidine kinase-%2C DNA gyrase B-%2C p%3B E%3D3.1e-25 gene gene1049 http://www.ncbi.nlm.nih.gov/gene/?term=RB2008 RB201 RB201 RB201 106781 107647 - sugar phosphate isomerase/epimerase best DB hits: BLAST: swissprot:Q9WYP7%3B Y416_THEMA HYPOTHETICAL PROTEIN TM0416 -----%3B E%3D4e-26 swissprot:O50580%3B DT3E_PSECI D-TAGATOSE 3-EPIMERASE -----%3B E%3D6e-13 swissprot:P73599%3B YD04_SYNY3 HYPOTHETICAL 32.8 KDA PROTEIN SLL1304%3B E%3D2e-12 COG: TM0416%3B COG1082 Predicted endonucleases%3B E%3D4e-27 gene gene115 http://www.ncbi.nlm.nih.gov/gene/?term=RB201 RB2010 RB2010 RB2010 1058648 1059391 + hypothetical protein gene gene1050 http://www.ncbi.nlm.nih.gov/gene/?term=RB2010 RB2011 RB2011 RB2011 1059411 1059692 + hypothetical protein gene gene1051 http://www.ncbi.nlm.nih.gov/gene/?term=RB2011 RB2012 RB2012 RB2012 1059627 1061186 - signal peptide gene gene1052 http://www.ncbi.nlm.nih.gov/gene/?term=RB2012 RB2013 RB2013 secA secA 1061404 1063605 + preprotein translocase subunit SecA functions in protein export%3B can interact with acidic membrane phospholipids and the SecYEG protein complex%3B binds to preproteins%3B binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein%3B ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane%3B additional proteins SecD/F/YajC aid SecA recycling%3B exists in an equilibrium between monomers and dimers%3B may possibly form higher order oligomers%3B in some organisms%2C there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins gene gene1053 http://www.ncbi.nlm.nih.gov/gene/?term=RB2013 RB2015 RB2015 RB2015 1063625 1063867 + hypothetical protein gene gene1054 http://www.ncbi.nlm.nih.gov/gene/?term=RB2015 RB2016 RB2016 RB2016 1063806 1065398 + hypothetical protein gene gene1055 http://www.ncbi.nlm.nih.gov/gene/?term=RB2016 RB2018 RB2018 RB2018 1065345 1065605 - hypothetical protein gene gene1056 http://www.ncbi.nlm.nih.gov/gene/?term=RB2018 RB2019 RB2019 RB2019 1065619 1065798 + hypothetical protein gene gene1057 http://www.ncbi.nlm.nih.gov/gene/?term=RB2019 RB202 RB202 RB202 107732 107884 - neurogenic locus Notch protein PMID: 3097517 best DB hits: BLAST: pir:A24420%3B notch protein - fruit fly (Drosophila melanogaster)%3B E%3D0.11 swissprot:P07207%3B NOTC_DROME NEUROGENIC LOCUS NOTCH PROTEIN%3B E%3D0.11 embl:CAB37610.1%3B (AL035436) EG:140G11.1 [Drosophila melanogaster]%3B E%3D0.11 gene gene116 http://www.ncbi.nlm.nih.gov/gene/?term=RB202 RB2020 RB2020 RB2020 1065874 1065996 + hypothetical protein gene gene1058 http://www.ncbi.nlm.nih.gov/gene/?term=RB2020 RB2021 RB2021 RB2021 1066001 1066123 + hypothetical protein gene gene1059 http://www.ncbi.nlm.nih.gov/gene/?term=RB2021 RB2022 RB2022 RB2022 1066199 1066984 - hypothetical protein PMID: 10484179 best DB hits: BLAST: ddbj:BAB06095.1%3B (AP001515) BH2376~~unknown conserved protein%3B E%3D4e-48 pir:G69884%3B conserved hypothetical protein ymdB - Bacillus subtilis%3B E%3D3e-46 pir:D75415%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D4e-38 COG: BH2376%3B COG1692 Uncharacterized BCR%3B E%3D4e-49 PFAM: PF02640%3B Uncharacterized BCR%2C YmdB family COG%3B E%3D1.9e-75 gene gene1060 http://www.ncbi.nlm.nih.gov/gene/?term=RB2022 RB2024 RB2024 rpsA rpsA 1067110 1068792 - 30S ribosomal protein S1 PMID: 9823893 best DB hits: BLAST: gb:AAD29257.1%3B AF107093_2 (AF107093) ribosomal protein S1%3B E%3D3e-48 gb:AAF64246.1%3B (AF045481) 30S ribosomal protein S1%3B E%3D2e-45 swissprot:Q9ZD28%3B RS1_RICPR 30S RIBOSOMAL PROTEIN S1 -----%3B E%3D3e-45 COG: RP521%3B COG0539 Ribosomal protein S1%3B E%3D3e-46 PFAM: PF00575%3B S1 RNA binding domain%3B E%3D3.6e-06 gene gene1061 http://www.ncbi.nlm.nih.gov/gene/?term=RB2024 RB2027 RB2027 RB2027 1068855 1069517 - signal peptide gene gene1062 http://www.ncbi.nlm.nih.gov/gene/?term=RB2027 RB203 RB203 RB203 107922 108965 - oxidoreductase PMID: 2498333 best DB hits: BLAST: pir:T04984%3B hypothetical protein T16L1.160 - Arabidopsis thaliana%3B E%3D3e-59 gb:AAF54729.1%3B (AE003694) CG18547 gene product [Drosophila%3B E%3D3e-44 gb:AAF54731.1%3B (AE003694) CG3397 gene product [Drosophila%3B E%3D4e-36 COG: YMR041c%3B COG0667 Predicted oxidoreductases (related to aryl-alcohol%3B E%3D9e-22 TM1183%3B COG1453 Predicted oxidoreductases of the aldo/keto reductase%3B E%3D1e-14 BS_yccK%3B COG0667 Predicted oxidoreductases (related to aryl-alcohol%3B E%3D2e-14 PFAM: PF00248%3B Aldo/keto reductase%3B E%3D1.3e-14 gene gene117 http://www.ncbi.nlm.nih.gov/gene/?term=RB203 RB2031 RB2031 RB2031 1069601 1069822 + hypothetical protein best DB hits: BLAST: gb:AAG13524.1%3B AC068924_29 (AC068924) non-LTR retroelement%3B E%3D0.55 gene gene1063 http://www.ncbi.nlm.nih.gov/gene/?term=RB2031 RB2032 RB2032 RB2032 1069776 1070867 - delta 9 acyl-lipid fatty acid desaturase PMID: 10937442 best DB hits: BLAST: embl:CAA05166.1%3B (AJ002065) delta-9 desaturase [Spirulina%3B E%3D2e-38 gb:AAD00699.1%3B (U90417) delta 9 acyl-lipid fatty acid desaturase%3B E%3D3e-37 gb:AAB61353.1%3B (U36390) delta-9 desaturase [Synechococcus sp. PCC%3B E%3D3e-37 COG: sll0541%3B COG1398 Fatty-acid desaturase%3B E%3D4e-38 PFAM: PF01069%3B Fatty acid desaturase%3B E%3D4e-28 gene gene1064 http://www.ncbi.nlm.nih.gov/gene/?term=RB2032 RB2034 RB2034 RB2034 1071018 1071485 + hypothetical protein gene gene1065 http://www.ncbi.nlm.nih.gov/gene/?term=RB2034 RB2038 RB2038 RB2038 1071604 1076265 - hypothetical protein best DB hits: BLAST: pir:T26963%3B hypothetical protein ZK1151.2a - Caenorhabditis elegans%3B E%3D0.089 pir:T26964%3B hypothetical protein ZK1151.2b - Caenorhabditis elegans%3B E%3D0.089 ddbj:BAA96036.1%3B (AB040945) KIAA1512 protein [Homo sapiens]%3B E%3D0.50 PFAM: PF00817%3B impB/mucB/samB family%3B E%3D0.24 gene gene1066 http://www.ncbi.nlm.nih.gov/gene/?term=RB2038 RB2043 RB2043 RB2043 1076233 1076418 + hypothetical protein gene gene1067 http://www.ncbi.nlm.nih.gov/gene/?term=RB2043 RB2044 RB2044 RB2044 1076379 1076585 + hypothetical protein gene gene1068 http://www.ncbi.nlm.nih.gov/gene/?term=RB2044 RB2045 RB2045 RB2045 1076544 1077461 - iron-sulfur cluster transporter PMID: 11259647 best DB hits: BLAST: embl:CAB51627.1%3B (AJ245398) hypothetical protein [Sinorhizobium%3B E%3D0.28 swissprot:P29908%3B YNQ2_PARDE HYPOTHETICAL 22.9 KD PROTEIN IN NQO2%3B E%3D0.30 gb:AAG02153.1%3B AF212041_9 (AF212041) NADH dehydogenase [Zymomonas%3B E%3D0.73 gene gene1069 http://www.ncbi.nlm.nih.gov/gene/?term=RB2045 RB2046 RB2046 RB2046 1077543 1078985 + hypothetical protein gene gene1070 http://www.ncbi.nlm.nih.gov/gene/?term=RB2046 RB2050 RB2050 RB2050 1079040 1079180 + hypothetical protein gene gene1071 http://www.ncbi.nlm.nih.gov/gene/?term=RB2050 RB2051 RB2051 RB2051 1079177 1080280 + mucin-like protein PMID: 10952301 best DB hits: BLAST: pir:D82333%3B conserved hypothetical protein VC0370 [imported] -%3B E%3D0.18 gb:AAC62109.1%3B (AF092449) mucin-like protein [Heterodera%3B E%3D0.43 gene gene1072 http://www.ncbi.nlm.nih.gov/gene/?term=RB2051 RB2052 RB2052 RB2052 1080412 1080579 - hypothetical protein gene gene1073 http://www.ncbi.nlm.nih.gov/gene/?term=RB2052 RB2053 RB2053 RB2053 1080562 1081023 + hypothetical protein gene gene1074 http://www.ncbi.nlm.nih.gov/gene/?term=RB2053 RB2055 RB2055 RB2055 1080965 1082173 + hypothetical protein PMID: 10952301 best DB hits: BLAST: pir:E82493%3B conserved hypothetical protein VCA0172 [imported] -%3B E%3D0.002 gb:AAD30858.1%3B AF116251_1 (AF116251) BatA [Bacteroides fragilis]%3B E%3D0.012 pir:T21759%3B hypothetical protein F35C5.9 - Caenorhabditis elegans%3B E%3D0.012 COG: VCA0172%3B COG3035 Uncharacterized BCR%3B E%3D2e-04 PFAM: PF00092%3B von Willebrand factor type A domain%3B E%3D0.00013 gene gene1075 http://www.ncbi.nlm.nih.gov/gene/?term=RB2055 RB2056 RB2056 RB2056 1082219 1082815 + hypothetical protein gene gene1076 http://www.ncbi.nlm.nih.gov/gene/?term=RB2056 RB2059 RB2059 RB2059 1082949 1084172 - nucleoside-diphosphate-sugar epimerase PMID: 10984043 best DB hits: BLAST: pir:E82979%3B hypothetical protein PA5343 [imported] - Pseudomonas%3B E%3D5e-21 gb:AAG18860.1%3B (AE004989) Vng0267h [Halobacterium sp. NRC-1]%3B E%3D4e-14 pir:G75470%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D3e-06 COG: PA5343%3B COG0451 Nucleoside-diphosphate-sugar epimerases%3B E%3D5e-22 PFAM: PF00367%3B phosphotransferase system%2C EIIB%3B E%3D0.66 gene gene1077 http://www.ncbi.nlm.nih.gov/gene/?term=RB2059 RB206 RB206 RB206 109144 109251 - signal peptide gene gene118 http://www.ncbi.nlm.nih.gov/gene/?term=RB206 RB2062 RB2062 degP degP 1084162 1085478 + serine protease DO-like PMID: 9204764 PMID: 7845208 best DB hits: BLAST: pir:B81914%3B probable periplasmic serine proteinase (EC 3.4.21.-)%3B E%3D1e-21 pir:S74643%3B proteinase hhoA (EC 3.4.-.-) - Synechocystis sp. (strain%3B E%3D1e-18 swissprot:Q52894%3B DEGP_RHIME PROBABLE SERINE PROTEASE DO-LIKE%3B E%3D3e-17 COG: NMB0532%3B COG0265 Trypsin-like serine proteases%2C typically%3B E%3D5e-22 CT823%3B COG0265 Trypsin-like serine proteases%2C typically periplasmic%2C%3B E%3D2e-18 XF2241%3B COG0265 Trypsin-like serine proteases%2C typically%3B E%3D4e-18 PFAM: PF01215%3B Cytochrome c oxidase subunit Vb%3B E%3D0.4 PF00089%3B Trypsin%3B E%3D0.029 PF00595%3B PDZ domain (Also known as DHR or G%3B E%3D1.7e-06 gene gene1078 http://www.ncbi.nlm.nih.gov/gene/?term=RB2062 RB2066 RB2066 RB2066 1085462 1086592 + serine protease PMID: 9204764 PMID: 7845208 best DB hits: BLAST: gb:AAK02818.1%3B (AE006110) HtrA [Pasteurella multocida]%3B E%3D2e-05 pir:A82581%3B periplasmic proteinase XF2241 [imported] - Xylella%3B E%3D2e-05 swissprot:P45129%3B HTOA_HAEIN PROBABLE PERIPLASMIC SERINE PROTEASE%3B E%3D3e-05 COG: XF2241%3B COG0265 Trypsin-like serine proteases%2C typically%3B E%3D2e-06 htrA%3B COG0265 Trypsin-like serine proteases%2C typically periplasmic%2C%3B E%3D5e-06 VC0566%3B COG0265 Trypsin-like serine proteases%2C typically%3B E%3D4e-05 PFAM: PF00595%3B PDZ domain (Also known as DHR o%3B E%3D9.6e-09 gene gene1079 http://www.ncbi.nlm.nih.gov/gene/?term=RB2066 RB2068 RB2068 RB2068 1086596 1088749 + hypothetical protein gene gene1080 http://www.ncbi.nlm.nih.gov/gene/?term=RB2068 RB207 RB207 RB207 109385 111136 - endosomal protein PMID: 11930014 best DB hits: BLAST: pir:S44243%3B endosomal protein - human ----- embl: CAA55632.1%3B E%3D0.71 gb:AAA79121.1%3B (L40157) endosome-associated protein [Homo%3B E%3D0.73 swissprot:P02566%3B MYSB_CAEEL MYOSIN HEAVY CHAIN B (MHC B) -----%3B E%3D0.82 PFAM: PF01882%3B Protein of unknown function DUF58%3B E%3D0.11 gene gene119 http://www.ncbi.nlm.nih.gov/gene/?term=RB207 RB2071 RB2071 RB2071 1088758 1088967 + hypothetical protein gene gene1081 http://www.ncbi.nlm.nih.gov/gene/?term=RB2071 RB2072 RB2072 RB2072 1089022 1089204 - hypothetical protein gene gene1082 http://www.ncbi.nlm.nih.gov/gene/?term=RB2072 RB2075 RB2075 RB2075 1089234 1090151 + hypothetical protein gene gene1083 http://www.ncbi.nlm.nih.gov/gene/?term=RB2075 RB2077 RB2077 RB2077 1090282 1090434 + hypothetical protein gene gene1084 http://www.ncbi.nlm.nih.gov/gene/?term=RB2077 RB2078 RB2078 RB2078 1090387 1091322 - proline racemase PMID: 10984043 best DB hits: BLAST: pir:G83487%3B hypothetical protein PA1268 [imported] - Pseudomonas%3B E%3D6e-68 gb:AAF97423.1%3B AF195522_1 (AF195522) B-cell mitogen precursor%3B E%3D2e-22 embl:CAB71312.1%3B (AJ130879) proline racemase [Clostridium%3B E%3D4e-18 COG: VNG0332C%3B COG0384 Predicted epimerase%2C PhzC/PhzF homolog%3B E%3D0.002 gene gene1085 http://www.ncbi.nlm.nih.gov/gene/?term=RB2078 RB2080 RB2080 RB2080 1091409 1091549 - hypothetical protein gene gene1086 http://www.ncbi.nlm.nih.gov/gene/?term=RB2080 RB2081 RB2081 RB2081 1091484 1096037 + X-Pro dipeptidyl-peptidase PMID: 7793970 best DB hits: BLAST: gb:AAG60941.1%3B AF322013_60 (AF322013) ID587 [Bradyrhizobium%3B E%3D1e-105 pir:S66261%3B X-Pro dipeptidyl-peptidase (EC 3.4.14.11) -%3B E%3D2e-23 ddbj:BAB10391.1%3B (AB006701) dipeptidyl peptidase IV-like protein%3B E%3D2e-23 COG: XF0015%3B COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases%3B E%3D2e-11 PFAM: PF00930%3B Dipeptidyl peptidase IV (DPP IV)%3B E%3D3.8e-06 PF01738%3B Dienelactone hydrolase%3B E%3D0.0042 gene gene1087 http://www.ncbi.nlm.nih.gov/gene/?term=RB2081 RB2082 RB2082 pltG pltG 1096122 1096904 - thioesterase PMID: 9512878 best DB hits: BLAST: pir:T17425%3B probable thioesterase (EC 3.1.2.-) pltG - Pseudomonas%3B E%3D1e-14 gb:AAC01736.1%3B (AF040570) thioesterase [Amycolatopsis%3B E%3D2e-14 gb:AAG52991.1%3B (AF040570) RifR [Amycolatopsis mediterranei]%3B E%3D2e-14 COG: PA2411%3B COG3208 Predicted thioesterase%3B E%3D5e-14 PFAM: PF00753%3B Metallo-beta-lactamase superfami%3B E%3D0.15 PF00975%3B Thioesterase domain%3B E%3D7.3e-32 gene gene1088 http://www.ncbi.nlm.nih.gov/gene/?term=RB2082 RB2084 RB2084 RB2084 1096948 1097097 - hypothetical protein gene gene1089 http://www.ncbi.nlm.nih.gov/gene/?term=RB2084 RB2085 RB2085 betC betC 1097128 1098594 + iduronate-2-sulfatase PMID: 94063929 best DB hits: BLAST: gb:AAA16877.1%3B (L13329) iduronate-2-sulfatase [Homo sapiens]%3B E%3D4e-62 gb:AAB33747.1%3B iduronate-2-sulfatase%2C IDS {EC 3.1.6.13} [human%2C%3B E%3D2e-61 gb:AAA37880.1%3B (L07921) iduronate sulfatase [Mus musculus]%3B E%3D2e-58 COG: PA2333%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D2e-34 yejM%3B COG3083 Predicted hydrolase of alkaline phosphatase%3B E%3D6e-06 Rv3077%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D3e-05 PFAM: PF00884%3B Sulfatase%3B E%3D1.4e-20 gene gene1090 http://www.ncbi.nlm.nih.gov/gene/?term=RB2085 RB2086 RB2086 RB2086 1098564 1100600 + O-GlcNAc transferase PMID: 10617197 best DB hits: BLAST: gb:AAC25927.2%3B (AC004681) O-GlcNAc transferase%3B E%3D1e-05 gb:AAB71463.1%3B (AC000098) Contains similarity to Rattus O-GlcNAc%3B E%3D3e-05 pir:T02544%3B hypothetical protein T26B15.1 - Arabidopsis thaliana%3B E%3D8e-05 COG: BH1262%3B COG0457 TPR-repeat-containing proteins%3B E%3D3e-04 PFAM: PF00515%3B TPR Domain%3B E%3D0.06 gene gene1091 http://www.ncbi.nlm.nih.gov/gene/?term=RB2086 RB2088 RB2088 RB2088 1100666 1101931 + hypothetical protein gene gene1092 http://www.ncbi.nlm.nih.gov/gene/?term=RB2088 RB2090 RB2090 RB2090 1101973 1102308 + hypothetical protein PMID: 8905231 best DB hits: BLAST: pir:S75103%3B hypothetical protein ssl0438 - Synechocystis sp.%3B E%3D0.028 COG: ssl0438%3B COG0222 Ribosomal protein L7/L12%3B E%3D0.003 gene gene1093 http://www.ncbi.nlm.nih.gov/gene/?term=RB2090 RB2091 RB2091 RB2091 1102525 1103328 - chitooligosaccharide deacetylase PMID: 10086841 best DB hits: BLAST: ddbj:BAB05636.1%3B (AP001513) chitooligosaccharide deacetylase%3B E%3D0.003 ddbj:BAB05021.1%3B (AP001511) BH1302~~unknown conserved protein%3B E%3D0.004 pir:A70081%3B conserved hypothetical protein yxkH - Bacillus subtilis%3B E%3D0.004 COG: BH1917%3B COG0726 Predicted xylanase/chitin deacetylase%3B E%3D3e-04 PFAM: PF01522%3B Polysaccharide deacetylase%3B E%3D0.055 gene gene1094 http://www.ncbi.nlm.nih.gov/gene/?term=RB2091 RB2092 RB2092 RB2092 1103340 1105265 - hypothetical protein gene gene1095 http://www.ncbi.nlm.nih.gov/gene/?term=RB2092 RB2096 RB2096 RB2096 1105484 1106467 - hypothetical protein gene gene1096 http://www.ncbi.nlm.nih.gov/gene/?term=RB2096 RB2097 RB2097 RB2097 1106473 1106658 + hypothetical protein gene gene1097 http://www.ncbi.nlm.nih.gov/gene/?term=RB2097 RB2098 RB2098 ndaD ndaD 1106613 1109489 - D-aminoacylase PMID: 8541651 best DB hits: BLAST: pir:B75202%3B d-aminoacylase (aspartate%2C glutamate etc) PAB0090 -%3B E%3D3e-78 swissprot:P72349%3B NDAD_ALCXX D-AMINOACYLASE (N-ACYL-D-AMINO-ACID%3B E%3D4e-53 swissprot:P94211%3B NDED_ALCXX N-ACYL-D-GLUTAMATE DEACYLASE%3B E%3D1e-51 COG: PAB0087%3B COG1680 Beta-lactamase class C and other penicillin binding%3B E%3D1e-25 PFAM: PF01979%3B Adenine deaminase%3B E%3D3.9e-08 PF00744%3B Dihydroorotase-like%3B E%3D0.13 PF00144%3B Beta-lactamase%3B E%3D0.022 gene gene1098 http://www.ncbi.nlm.nih.gov/gene/?term=RB2098 RB210 RB210 RB210 111133 112158 - hypothetical protein gene gene120 http://www.ncbi.nlm.nih.gov/gene/?term=RB210 RB2100 RB2100 RB2100 1109368 1109658 + hypothetical protein gene gene1099 http://www.ncbi.nlm.nih.gov/gene/?term=RB2100 RB2101 RB2101 RB2101 1109640 1109816 - hypothetical protein gene gene1100 http://www.ncbi.nlm.nih.gov/gene/?term=RB2101 RB2102 RB2102 RB2102 1109792 1110028 + hypothetical protein gene gene1101 http://www.ncbi.nlm.nih.gov/gene/?term=RB2102 RB2103 RB2103 RB2103 1110119 1112464 + acyl-CoA synthetase PMID: 9634230 best DB hits: BLAST: pir:T18551%3B saframycin Mx1 synthetase B - Myxococcus xanthus -----%3B E%3D1e-101 pir:H83343%3B probable non-ribosomal peptide synthetase PA2424%3B E%3D4e-96 gb:AAG02359.1%3B AF210249_18 (AF210249) peptide synthetase NRPS5-4-3%3B E%3D7e-93 COG: PA2424_1%3B COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid%3B E%3D4e-97 Rv3826%3B COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases%3B E%3D7e-82 VNG1339C%3B COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid%3B E%3D9e-19 PFAM: PF00501%3B AMP-binding enzyme%3B E%3D1.7e-07 PF00550%3B Phosphopantetheine attachment sit%3B E%3D1.2e-12 gene gene1102 http://www.ncbi.nlm.nih.gov/gene/?term=RB2103 RB2105 RB2105 RB2105 1112600 1114012 - signal peptide gene gene1103 http://www.ncbi.nlm.nih.gov/gene/?term=RB2105 RB2107 RB2107 RB2107 1113972 1114253 + hypothetical protein gene gene1104 http://www.ncbi.nlm.nih.gov/gene/?term=RB2107 RB2110 RB2110 RB2110 1114250 1115653 + multidrug resistance protein norM PMID: 8590279 best DB hits: BLAST: gb:AAG27731.1%3B AF312031_1 (AF312031) multi-drug efflux transporter%3B E%3D5e-14 swissprot:Q55364%3B Y896_SYNY3 HYPOTHETICAL 49.7 KDA PROTEIN SLR0896%3B E%3D1e-13 pir:E82527%3B multidrug efflux protein XF2686 [imported] - Xylella%3B E%3D3e-13 COG: slr0896%3B COG0534 Na+-driven multidrug efflux pump%3B E%3D1e-14 PFAM: PF01554%3B Uncharacterized membrane protein fam%3B E%3D1.6e-15 gene gene1105 http://www.ncbi.nlm.nih.gov/gene/?term=RB2110 RB2114 RB2114 citB citB 1115740 1118445 + aconitate hydratase Catalyzes the conversion of citrate to isocitrate gene gene1106 http://www.ncbi.nlm.nih.gov/gene/?term=RB2114 RB2115 RB2115 speE speE 1118463 1120007 + spermidine synthase catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine gene gene1107 http://www.ncbi.nlm.nih.gov/gene/?term=RB2115 RB2116 RB2116 RB2116 1120043 1120354 + hypothetical protein gene gene1108 http://www.ncbi.nlm.nih.gov/gene/?term=RB2116 RB2117 RB2117 RB2117 1120297 1120638 - nuclear scaffold-like protein p76 PMID: 11859360 best DB hits: BLAST: pir:A30185%3B nuclear protein nuc2+ - fission yeast%3B E%3D0.38 pir:T11581%3B nuclear scaffold-like protein p76 - fission yeast%3B E%3D0.38 swissprot:P10505%3B NUC2_SCHPO NUCLEAR SCAFFOLD-LIKE PROTEIN P76%3B E%3D0.38 PFAM: PF00515%3B TPR Domain%3B E%3D2.1e-05 gene gene1109 http://www.ncbi.nlm.nih.gov/gene/?term=RB2117 RB2118 RB2118 gcpE gcpE 1120813 1121961 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) PMID: 1521767 best DB hits: BLAST: swissprot:P27433%3B GCPE_ECOLI GCPE PROTEIN (PROTEIN E) -----%3B E%3D6e-47 pir:F82283%3B gcpE protein VC0759 [imported] - Vibrio cholerae (group%3B E%3D1e-46 gb:AAK04094.1%3B (AE006237) GcpE [Pasteurella multocida]%3B E%3D2e-46 COG: gcpE%3B COG0821 Essential bacterial protein%2C involved in%3B E%3D6e-48 gene gene1110 http://www.ncbi.nlm.nih.gov/gene/?term=RB2118 RB2120 RB2120 RB2120 1121915 1122079 + hypothetical protein gene gene1111 http://www.ncbi.nlm.nih.gov/gene/?term=RB2120 RB2121 RB2121 RB2121 1122146 1123042 - hypothetical protein PMID: 10567266 best DB hits: BLAST: pir:D75557%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D8e-57 pir:S77243%3B hypothetical protein slr1363 - Synechocystis sp. (strain%3B E%3D1e-32 pir:F83213%3B conserved hypothetical protein PA3455 [imported] -%3B E%3D9e-28 COG: DR0132%3B COG2326 Uncharacterized BCR%3B E%3D8e-58 gene gene1112 http://www.ncbi.nlm.nih.gov/gene/?term=RB2121 RB2123 RB2123 RB2123 1123056 1123271 - hypothetical protein gene gene1113 http://www.ncbi.nlm.nih.gov/gene/?term=RB2123 RB2125 RB2125 RB2125 1123268 1123954 - signal peptide gene gene1114 http://www.ncbi.nlm.nih.gov/gene/?term=RB2125 RB213 RB213 RB213 112302 115646 + signal peptide gene gene121 http://www.ncbi.nlm.nih.gov/gene/?term=RB213 RB2132 RB2132 RB2132 1124750 1128004 - signal peptide gene gene1117 http://www.ncbi.nlm.nih.gov/gene/?term=RB2132 RB2135 RB2135 RB2135 1127997 1129463 - heparan N-sulfatase PMID: 11181566 best DB hits: BLAST: gb:AAG41945.1%3B AF304053_1 (AF304053) heparan N-sulfatase [Mus%3B E%3D4e-62 gb:AAF29467.1%3B (AF156255) N-sulfoglucosamine sulfohydrolase [Mus%3B E%3D6e-62 gb:AAG41946.1%3B AF304054_1 (AF304054) mutant heparan N-sulfatase%3B E%3D1e-61 COG: Rv0296c%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D7e-23 PAB0793%3B COG2194 Predicted membrane-associated%2C metal-dependent%3B E%3D0.002 BS_yfnI%3B COG1368 Phosphoglycerol transferase and related proteins%2C%3B E%3D0.002 PFAM: PF00884%3B Sulfatase%3B E%3D7.8e-22 gene gene1118 http://www.ncbi.nlm.nih.gov/gene/?term=RB2135 RB2136 RB2136 RB2136 1129426 1131408 + hypothetical protein best DB hits: BLAST: gb:AAD26901.1%3B AC007267_1 (AC007267) leucine-rich repeat%3B E%3D0.011 gb:AAF82144.1%3B AC034256_8 (AC034256) Contains similarity to F-box%3B E%3D0.040 pir:T08903%3B hypothetical protein T32A16.10 - Arabidopsis thaliana%3B E%3D0.25 gene gene1119 http://www.ncbi.nlm.nih.gov/gene/?term=RB2136 RB2140 RB2140 RB2140 1131458 1131607 + hypothetical protein gene gene1120 http://www.ncbi.nlm.nih.gov/gene/?term=RB2140 RB2141 RB2141 rluA rluA 1131677 1132375 - ribosomal large subunit pseudouridine synthase A PMID: 1630901%2C7493321 best DB hits: BLAST: swissprot:P39219%3B RLUA_ECOLI RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE%3B E%3D5e-15 gb:AAG54362.1%3B AE005182_11 (AE005182) orf%2C hypothetical protein%3B E%3D3e-14 pir:C82498%3B ribosomal large chain pseudouridine synthase A VCA0104%3B E%3D5e-14 COG: rluA%3B COG0564 Pseudouridylate synthases%2C 23S RNA-specific%3B E%3D5e-16 PFAM: PF00849%3B RNA pseudouridylate synthase%3B E%3D4.8e-31 gene gene1121 http://www.ncbi.nlm.nih.gov/gene/?term=RB2141 RB2142 RB2142 RB2142 1132342 1133277 - inorganic polyphosphate/ATP-NAD kinase PMID: 10993077 best DB hits: BLAST: pir:H82272%3B conserved hypothetical protein VC0853 [imported] -%3B E%3D3e-38 pir:D83259%3B conserved hypothetical protein PA3088 [imported] -%3B E%3D3e-36 gb:AAK02417.1%3B (AE006069) unknown [Pasteurella multocida]%3B E%3D5e-33 COG: VC0853%3B COG0061 Predicted kinase%3B E%3D2e-39 PFAM: PF01513%3B Domain of unknown function DUF15%3B E%3D6.2e-72 gene gene1122 http://www.ncbi.nlm.nih.gov/gene/?term=RB2142 RB2143 RB2143 dxs dxs 1133232 1135139 - 1-deoxy-D-xylulose-5-phosphate synthase catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate gene gene1123 http://www.ncbi.nlm.nih.gov/gene/?term=RB2143 RB2144 RB2144 ggpP ggpP 1135136 1136089 - geranylgeranyl pyrophosphate synthetase [precursor] PMID: 8016276%2C10617198 best DB hits: BLAST: pir:S74538%3B geranylgeranyl pyrophosphate synthase - Synechocystis%3B E%3D3e-37 ddbj:BAA82613.1%3B (AB016093) geranylgeranyl diphosphate synthase%3B E%3D1e-36 embl:CAC10561.1%3B (AJ249453) gpp synthase large subunit [Mentha x%3B E%3D1e-35 COG: slr0739%3B COG0142 Geranylgeranyl pyrophosphate synthase%3B E%3D3e-38 PFAM: PF00348%3B Polyprenyl synthetase%3B E%3D1.6e-83 gene gene1124 http://www.ncbi.nlm.nih.gov/gene/?term=RB2144 RB2146 RB2146 xseB xseB 1136086 1136505 - exodeoxyribonuclease VII small subunit PMID: 10984043 best DB hits: BLAST: pir:C82778%3B exodeoxyribonuclease small subunit XF0660 [imported] -%3B E%3D1e-04 pir:E83139%3B exodeoxyribonuclease VII small subunit PA4042%3B E%3D0.001 gb:AAF12842.1%3B AF203881_15 (AF203881) exodeoxyribonuclease small%3B E%3D0.008 COG: XF0660%3B COG1722 Exonuclease VII small subunit%3B E%3D1e-05 gene gene1125 http://www.ncbi.nlm.nih.gov/gene/?term=RB2146 RB2147 RB2147 RB2147 1136498 1136689 - hypothetical protein gene gene1126 http://www.ncbi.nlm.nih.gov/gene/?term=RB2147 RB2148 RB2148 RB2148 1136676 1137986 + hypothetical protein PMID: 20075061 best DB hits: BLAST: ddbj:BAA89233.1%3B (AB021180) skeletal myosin heavy chain [Gallus%3B E%3D0.15 pir:A32491%3B myosin heavy chain 1%2C muscle - fruit fly (Drosophila%3B E%3D0.34 pir:B32491%3B myosin heavy chain 2%2C muscle - fruit fly (Drosophila%3B E%3D0.41 gene gene1127 http://www.ncbi.nlm.nih.gov/gene/?term=RB2148 RB2150 RB2150 RB2150 1138030 1138311 - hypothetical protein gene gene1128 http://www.ncbi.nlm.nih.gov/gene/?term=RB2150 RB2152 RB2152 RB2152 1138372 1138839 - hypothetical protein best DB hits: PFAM: PF00293%3B MutT-like domain%3B E%3D4.2e-24 gene gene1129 http://www.ncbi.nlm.nih.gov/gene/?term=RB2152 RB2154 RB2154 RB2154 1138946 1140193 - signal peptide gene gene1130 http://www.ncbi.nlm.nih.gov/gene/?term=RB2154 RB2155 RB2155 RB2155 1140190 1140660 - hypothetical protein gene gene1131 http://www.ncbi.nlm.nih.gov/gene/?term=RB2155 RB2156 RB2156 RB2156 1140679 1140837 - hypothetical protein gene gene1132 http://www.ncbi.nlm.nih.gov/gene/?term=RB2156 RB2158 RB2158 RB2158 1140771 1141043 - hypothetical protein gene gene1133 http://www.ncbi.nlm.nih.gov/gene/?term=RB2158 RB2160 RB2160 RB2160 1141002 1143161 + alpha-amylase PMID: 2453362 best DB hits: BLAST: swissprot:P09961%3B AMY1_DICTH ALPHA-AMYLASE 1 (1%2C4-ALPHA-D-GLUCAN%3B E%3D1e-120 ddbj:BAA22063.1%3B (D88253) 4-alpha-glucanotransferase%3B E%3D1e-114 ddbj:BAA22062.1%3B (D87907) 4-alpha-glucanotransferase [Pyrococcus%3B E%3D1e-112 COG: PAB0118%3B COG1449 Alpha-amylase/alpha-mannosidase%3B E%3D1e-111 Rv3031%3B COG1543 Uncharacterized ACR%3B E%3D1e-04 gene gene1134 http://www.ncbi.nlm.nih.gov/gene/?term=RB2160 RB2162 RB2162 pknH pknH 1143214 1144158 + serine/threonine-protein kinase pknH PMID: 9634230 best DB hits: BLAST: ddbj:BAB06223.1%3B (AP001515) serinethreonine protein kinase%3B E%3D4e-24 pir:D83637%3B serinethreonine protein kinase PpkA PA0074 [imported] -%3B E%3D1e-23 gb:AAD03499.2%3B (AF035395) serinethreonine protein kinase PpkA%3B E%3D2e-23 COG: BH2504_1%3B COG0515 Serine/threonine protein kinases%3B E%3D4e-25 PFAM: PF00069%3B Protein kinase domain%3B E%3D3.2e-44 gene gene1135 http://www.ncbi.nlm.nih.gov/gene/?term=RB2162 RB2163 RB2163 RB2163 1144252 1144569 - signal peptide gene gene1136 http://www.ncbi.nlm.nih.gov/gene/?term=RB2163 RB2166 RB2166 RB2166 1144790 1146214 - hypothetical protein best DB hits: PFAM: PF02746%3B Mandelate racemase / muconate lacton%3B E%3D0.04 gene gene1137 http://www.ncbi.nlm.nih.gov/gene/?term=RB2166 RB2168 RB2168 RB2168 1146271 1146378 + hypothetical protein gene gene1138 http://www.ncbi.nlm.nih.gov/gene/?term=RB2168 RB2170 RB2170 RB2170 1146430 1147911 + hypothetical protein PMID: 11823852 gene gene1139 http://www.ncbi.nlm.nih.gov/gene/?term=RB2170 RB2173 RB2173 RB2173 1146895 1147959 - hypothetical protein gene gene1140 http://www.ncbi.nlm.nih.gov/gene/?term=RB2173 RB2174 RB2174 RB2174 1148065 1148514 + transcriptional regulator PMID: 1558950 best DB hits: BLAST: gb:AAB38544.1%3B (L41661) srrB [Synechococcus sp.]%3B E%3D5e-09 pir:A71678%3B probable response regulatory protein RP237 - Rickettsia%3B E%3D2e-08 gb:AAD51348.1%3B AF173226_5 (AF173226) SmeR [Stenotrophomonas%3B E%3D7e-08 COG: RP237_1%3B COG0784 CheY-like receiver domains%3B E%3D7e-09 PA2523%3B COG0745 Response regulators consisting of a CheY-like%3B E%3D9e-08 VC0622_4%3B COG0784 CheY-like receiver domains%3B E%3D9e-08 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D1.1e-10 gene gene1141 http://www.ncbi.nlm.nih.gov/gene/?term=RB2174 RB2175 RB2175 RB2175 1148511 1148807 + signal peptide gene gene1142 http://www.ncbi.nlm.nih.gov/gene/?term=RB2175 RB2176 RB2176 RB2176 1148648 1149025 + hypothetical protein best DB hits: BLAST: pir:E83085%3B conserved hypothetical protein PA4488 [imported] -%3B E%3D0.81 gene gene1143 http://www.ncbi.nlm.nih.gov/gene/?term=RB2176 RB2178 RB2178 RB2178 1149035 1149685 + hypothetical protein gene gene1144 http://www.ncbi.nlm.nih.gov/gene/?term=RB2178 RB2179 RB2179 RB2179 1149988 1150587 + hypothetical protein gene gene1145 http://www.ncbi.nlm.nih.gov/gene/?term=RB2179 RB218 RB218 RB218 115765 117177 + hypothetical protein PMID: 11743194 gene gene122 http://www.ncbi.nlm.nih.gov/gene/?term=RB218 RB2181 RB2181 RB2181 1150628 1151242 + hypothetical protein gene gene1146 http://www.ncbi.nlm.nih.gov/gene/?term=RB2181 RB2182 RB2182 RB2182 1151579 1152463 - transposase PMID: 8905231 best DB hits: BLAST: pir:S77171%3B transposase sll1710 - Synechocystis sp. (strain PCC%3B E%3D1e-55 gb:AAB72024.1%3B (U38799) transposase [Synechocystis sp.]%3B E%3D7e-55 pir:S35005%3B probable transposase - Acetobacter xylinus insertion%3B E%3D1e-54 COG: sll1710%3B COG3293 Predicted transposase%3B E%3D9e-57 PFAM: PF01511%3B Transposase%3B E%3D9e-35 PF01675%3B Transposase%3B E%3D2.1e-31 gene gene1147 http://www.ncbi.nlm.nih.gov/gene/?term=RB2182 RB2185 RB2185 RB2185 1152529 1152681 - hypothetical protein gene gene1148 http://www.ncbi.nlm.nih.gov/gene/?term=RB2185 RB2186 RB2186 InsA InsA 1152692 1153993 - InsA (transposase) best DB hits: BLAST: gb:AAD45539.1%3B U70376_1 (U70376) InsA [Streptomyces netropsis]%3B E%3D5e-33 gb:AAG60893.1%3B AF322013_12 (AF322013) ID460 [Bradyrhizobium%3B E%3D8e-33 ddbj:BAA19966.1%3B (D63923) transposase [Acetobacter pasteurianus]%3B E%3D1e-26 gene gene1149 http://www.ncbi.nlm.nih.gov/gene/?term=RB2186 RB2187 RB2187 RB2187 1153971 1154114 + hypothetical protein gene gene1150 http://www.ncbi.nlm.nih.gov/gene/?term=RB2187 RB2188 RB2188 RB2188 1154177 1154584 + hypothetical protein gene gene1151 http://www.ncbi.nlm.nih.gov/gene/?term=RB2188 RB2190 RB2190 RB2190 1154761 1155291 + hypothetical protein gene gene1152 http://www.ncbi.nlm.nih.gov/gene/?term=RB2190 RB2191 RB2191 RB2191 1155340 1156002 + hypothetical protein gene gene1153 http://www.ncbi.nlm.nih.gov/gene/?term=RB2191 RB2193 RB2193 RB2193 1156095 1156949 + hypothetical protein PMID: 11337471 best DB hits: BLAST: gb:AAK05788.1%3B AE006399_9 (AE006399) UNKNOWN PROTEIN [Lactococcus%3B E%3D1e-18 gene gene1154 http://www.ncbi.nlm.nih.gov/gene/?term=RB2193 RB2197 RB2197 RB2197 1157029 1157313 - hypothetical protein gene gene1155 http://www.ncbi.nlm.nih.gov/gene/?term=RB2197 RB2198 RB2198 RB2198 1157235 1157486 + hypothetical protein gene gene1156 http://www.ncbi.nlm.nih.gov/gene/?term=RB2198 RB220 RB220 RB220 117170 118141 + signal peptide gene gene123 http://www.ncbi.nlm.nih.gov/gene/?term=RB220 RB2200 RB2200 RB2200 1157514 1159097 - small conductance mechanosensitive ion channel PMID: 10910347 best DB hits: BLAST: pir:C82162%3B conserved hypothetical protein VC1751 [imported] -%3B E%3D3e-56 swissprot:O52401%3B YGGB_EDWIC HYPOTHETICAL 30.6 KDA PROTEIN IN%3B E%3D4e-41 pir:A82318%3B conserved hypothetical protein VC0480 [imported] -%3B E%3D5e-40 COG: VC1751%3B COG0668 Small-conductance mechanosensitive channel%3B E%3D3e-57 PFAM: PF00924%3B Uncharacterized protein family UPF00%3B E%3D2.9e-71 gene gene1157 http://www.ncbi.nlm.nih.gov/gene/?term=RB2200 RB2201 RB2201 RB2201 1159076 1159273 + hypothetical protein gene gene1158 http://www.ncbi.nlm.nih.gov/gene/?term=RB2201 RB2202 RB2202 RB2202 1159286 1160347 + penicillin acylase PMID: 3026906 best DB hits: BLAST: pir:S74628%3B hypothetical protein slr1772 - Synechocystis sp. (strain%3B E%3D1e-122 pir:E82406%3B probable hydrolase VCA0877 [imported] - Vibrio cholerae%3B E%3D6e-50 swissprot:P12256%3B PAC_BACSH PENICILLIN ACYLASE (PENICILLIN V%3B E%3D1e-09 COG: slr1772%3B COG3049 Penicillin V acylase and related amidases%3B E%3D1e-124 PFAM: PF02275%3B Choloylglycine hydrolase%3B E%3D7.3e-95 gene gene1159 http://www.ncbi.nlm.nih.gov/gene/?term=RB2202 RB2203 RB2203 RB2203 1160319 1160492 - hypothetical protein gene gene1160 http://www.ncbi.nlm.nih.gov/gene/?term=RB2203 RB2204 RB2204 RB2204 1160497 1161396 - ParA family chromosome partitioning ATPase PMID: 10567266 best DB hits: BLAST: pir:A75323%3B probable chromosome partitioning ATPase%2C ParA family -%3B E%3D1e-15 swissprot:P31856%3B YGI1_PSEPU HYPOTHETICAL 28.9 KD PROTEIN IN%3B E%3D1e-08 pir:S72958%3B hypothetical protein u0247b - Mycobacterium leprae%3B E%3D2e-08 COG: DR2040%3B COG1192 ATPases involved in chromosome partitioning%3B E%3D9e-17 BU326%3B COG2894 Septum formation inhibitor-activating ATPase%3B E%3D1e-04 VC2773%3B COG1192 ATPases involved in chromosome partitioning%3B E%3D2e-04 PFAM: PF02374%3B Anion-transporting ATPase%3B E%3D0.0058 PF00991%3B ParA family ATPase%3B E%3D2.6e-05 gene gene1161 http://www.ncbi.nlm.nih.gov/gene/?term=RB2204 RB2205 RB2205 RB2205 1161466 1161648 - hypothetical protein gene gene1162 http://www.ncbi.nlm.nih.gov/gene/?term=RB2205 RB2206 RB2206 RB2206 1161608 1162279 - hypothetical protein PMID: 8905231 best DB hits: BLAST: pir:S76621%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D9e-23 ddbj:BAA84086.1%3B (AB032065) hypothetical protein [Streptomyces%3B E%3D6e-21 embl:CAB61873.1%3B (AL133252) hypothetical protein SCE46.22%3B E%3D6e-21 COG: slr0092%3B COG0463 Glycosyltransferases involved in cell wall%3B E%3D8e-24 PAB1314%3B COG1215 Glycosyltransferases%2C probably involved in cell%3B E%3D2e-07 Rv2957%3B COG0463 Glycosyltransferases involved in cell wall%3B E%3D7e-07 PFAM: PF00535%3B Glycosyl transferase%3B E%3D2.6e-21 gene gene1163 http://www.ncbi.nlm.nih.gov/gene/?term=RB2206 RB2209 RB2209 RB2209 1162331 1163572 - signal peptide gene gene1164 http://www.ncbi.nlm.nih.gov/gene/?term=RB2209 RB2211 RB2211 RB2211 1163498 1163779 + hypothetical protein gene gene1165 http://www.ncbi.nlm.nih.gov/gene/?term=RB2211 RB2212 RB2212 RB2212 1163797 1164273 + hypothetical protein gene gene1166 http://www.ncbi.nlm.nih.gov/gene/?term=RB2212 RB2216 RB2216 RB2216 1164291 1164998 - hypothetical protein gene gene1167 http://www.ncbi.nlm.nih.gov/gene/?term=RB2216 RB2217 RB2217 RB2217 1165024 1166499 + hypothetical protein gene gene1168 http://www.ncbi.nlm.nih.gov/gene/?term=RB2217 RB222 RB222 RB222 118214 118324 - hypothetical protein gene gene124 http://www.ncbi.nlm.nih.gov/gene/?term=RB222 RB2221 RB2221 RB2221 1166576 1166764 - hypothetical protein gene gene1169 http://www.ncbi.nlm.nih.gov/gene/?term=RB2221 RB2222 RB2222 RB2222 1166754 1167413 + signal peptide gene gene1170 http://www.ncbi.nlm.nih.gov/gene/?term=RB2222 RB2225 RB2225 RB2225 1167491 1167613 - hypothetical protein gene gene1171 http://www.ncbi.nlm.nih.gov/gene/?term=RB2225 RB2226 RB2226 RB2226 1167675 1173032 + vegetatible incompatibility protein HET-E-1 PMID: 7557402 best DB hits: BLAST: swissprot:Q00808%3B HET1_PODAN VEGETATIBLE INCOMPATIBILITY PROTEIN%3B E%3D7e-18 swissprot:P49695%3B PKWA_THECU SERINETHREONINE-PROTEIN%3B E%3D4e-13 gb:AAG40737.1%3B AF299085_1 (AF299085) Bap1 [Myxococcus xanthus]%3B E%3D2e-12 COG: slr0143_2%3B COG2319 WD40 repeat protein%3B E%3D2e-09 PFAM: PF00400%3B WD domain%2C G-beta repeat%3B E%3D0.2 PF01011%3B PQQ enzyme repeat%3B E%3D0.66 PF00400%3B WD domain%2C G-beta repeat%3B E%3D0.12 gene gene1172 http://www.ncbi.nlm.nih.gov/gene/?term=RB2226 RB223 RB223 RB223 118401 120395 - 4-hydroxybenzoate decarboxylase PMID: 10438791 best DB hits: BLAST: ddbj:BAB07649.1%3B (AP001520) BH3930~~unknown conserved protein in%3B E%3D1e-170 swissprot:Q9Z8L0%3B Y328_CHLPN HYPOTHETICAL PROTEIN%3B E%3D1e-86 swissprot:O84087%3B Y085_CHLTR HYPOTHETICAL PROTEIN CT085 -----%3B E%3D3e-86 COG: BH3930%3B COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and%3B E%3D1e-171 PFAM: PF01977%3B Protein of unknown function UPF0096%3B E%3D6.7e-19 gene gene125 http://www.ncbi.nlm.nih.gov/gene/?term=RB223 RB2231 RB2231 RB2231 1173061 1174557 + hypothetical protein gene gene1173 http://www.ncbi.nlm.nih.gov/gene/?term=RB2231 RB2234 RB2234 RB2234 1174607 1174843 + hypothetical protein gene gene1174 http://www.ncbi.nlm.nih.gov/gene/?term=RB2234 RB2235 RB2235 RB2235 1174887 1175042 + hypothetical protein gene gene1175 http://www.ncbi.nlm.nih.gov/gene/?term=RB2235 RB2237 RB2237 RB2237 1175268 1175519 - hypothetical protein gene gene1176 http://www.ncbi.nlm.nih.gov/gene/?term=RB2237 RB2238 RB2238 RB2238 1175510 1176826 + flavohemoprotein PMID: 8125952 best DB hits: BLAST: swissprot:P39662%3B HMPA_ALCEU FLAVOHEMOPROTEIN (HEMOGLOBIN-LIKE%3B E%3D7e-29 swissprot:P49852%3B HMPA_BACSU FLAVOHEMOPROTEIN (HEMOGLOBIN-LIKE%3B E%3D2e-26 swissprot:P26353%3B HMPA_SALTY FLAVOHEMOPROTEIN (HEMOGLOBIN-LIKE%3B E%3D2e-26 COG: BS_hmp_2%3B COG1018 Flavodoxin reductases (ferredoxin-NADPH%3B E%3D1e-27 hmp_2%3B COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases)%3B E%3D5e-25 BH1058_2%3B COG1018 Flavodoxin reductases (ferredoxin-NADPH%3B E%3D5e-23 PFAM: PF00970%3B Oxidoreductase FAD-binding doma%3B E%3D3.5e-24 PF01794%3B Ferric reductase like transmemb%3B E%3D0.76 PF00175%3B Oxidoreductase FAD/NAD-binding%3B E%3D2e-05 gene gene1177 http://www.ncbi.nlm.nih.gov/gene/?term=RB2238 RB2239 RB2239 RB2239 1176975 1177865 - short-chain dehydrogenase PMID: 10984043 best DB hits: BLAST: pir:G75333%3B 3-oxoacyl-acyl carrier protein reductase - Deinococcus%3B E%3D1e-16 gb:AAB82041.1%3B (U59236) unknown [Synechococcus sp. PCC 7942]%3B E%3D1e-16 pir:E83152%3B probable short-chain dehydrogenase PA3957 [imported] -%3B E%3D4e-16 COG: DR1943%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D9e-18 BH1506%3B COG0300 Short-chain dehydrogenases of various substrate%3B E%3D3e-15 VNG1341G%3B COG1028 Dehydrogenases with different specificities%3B E%3D3e-14 PFAM: PF00106%3B short chain dehydrogenase%3B E%3D9.2e-43 gene gene1178 http://www.ncbi.nlm.nih.gov/gene/?term=RB2239 RB2242 RB2242 RB2242 1177796 1178527 - short chain dehydrogenase/reductase oxidoreductase PMID: 10952301 best DB hits: BLAST: pir:G82383%3B oxidoreductase%2C short-chain dehydrogenasereductase%3B E%3D2e-20 gb:AAG54602.1%3B AE005204_12 (AE005204) oxidoreductase%3B E%3D7e-20 gb:AAF18286.1%3B (AF088897) oxidoreductase%3B orf4 [Zymomonas%3B E%3D6e-19 COG: VCA1057%3B COG0300 Short-chain dehydrogenases of various substrate%3B E%3D2e-21 slr0315%3B COG1028 Dehydrogenases with different specificities%3B E%3D7e-20 PA4148%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D3e-18 PFAM: PF00106%3B short chain dehydrogenase%3B E%3D5.3e-49 gene gene1179 http://www.ncbi.nlm.nih.gov/gene/?term=RB2242 RB2244 RB2244 RB2244 1178675 1179253 + glutathione peroxidase PMID: 11859360 best DB hits: BLAST: pir:T44271%3B glutathione peroxidase homolog [imported] -%3B E%3D4e-40 embl:CAB88451.1%3B (AL353815) glutathione peroxidase%3B E%3D4e-38 pir:F83541%3B probable glutathione peroxidase PA0838 [imported] -%3B E%3D5e-38 COG: PA0838%3B COG0386 Glutathione peroxidase%3B E%3D5e-39 PFAM: PF00255%3B Glutathione peroxidase%3B E%3D7e-54 gene gene1180 http://www.ncbi.nlm.nih.gov/gene/?term=RB2244 RB2247 RB2247 RB2247 1179499 1181238 - hypothetical protein best DB hits: BLAST: gb:AAG19229.1%3B (AE005019) Vng0754c [Halobacterium sp. NRC-1]%3B E%3D9e-06 gb:AAF75279.1%3B AF265353_1 (AF265353) byssal protein Dpfp1%3B E%3D0.21 ddbj:BAA94345.1%3B (AB035520) parchorin [Oryctolagus cuniculus]%3B E%3D0.50 PFAM: PF00089%3B Trypsin%3B E%3D0.58 gene gene1181 http://www.ncbi.nlm.nih.gov/gene/?term=RB2247 RB2251 RB2251 RB2251 1181487 1181714 - hypothetical protein gene gene1182 http://www.ncbi.nlm.nih.gov/gene/?term=RB2251 RB2252 RB2252 RB2252 1181540 1181701 - hypothetical protein gene gene1183 http://www.ncbi.nlm.nih.gov/gene/?term=RB2252 RB2253 RB2253 RB2253 1181661 1182374 + redox-sensing transcriptional repressor Rex modulates transcription in response to the NADH/NAD(+) redox state gene gene1184 http://www.ncbi.nlm.nih.gov/gene/?term=RB2253 RB2254 RB2254 RB2254 1182443 1184068 - iduronate-2-sulfatase PMID: 8244397 PMID: 8325651 best DB hits: BLAST: gb:AAA16877.1%3B (L13329) iduronate-2-sulfatase [Homo sapiens]%3B E%3D1e-44 gb:AAA37880.1%3B (L07921) iduronate sulfatase [Mus musculus]%3B E%3D1e-44 gb:AAB33747.1%3B iduronate-2-sulfatase%2C IDS {EC 3.1.6.13} [human%2C%3B E%3D5e-44 COG: PA0031%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D3e-38 BS_yqgS%3B COG1368 Phosphoglycerol transferase and related proteins%2C%3B E%3D0.001 aslA%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D0.001 PFAM: PF00884%3B Sulfatase%3B E%3D3.2e-21 gene gene1185 http://www.ncbi.nlm.nih.gov/gene/?term=RB2254 RB2255 RB2255 RB2255 1184132 1186018 - hypothetical protein gene gene1186 http://www.ncbi.nlm.nih.gov/gene/?term=RB2255 RB2258 RB2258 RB2258 1186140 1186325 - hypothetical protein gene gene1187 http://www.ncbi.nlm.nih.gov/gene/?term=RB2258 RB2259 RB2259 RB2259 1186316 1187020 + hypothetical protein gene gene1188 http://www.ncbi.nlm.nih.gov/gene/?term=RB2259 RB226 RB226 RB226 120568 120834 - hypothetical protein gene gene126 http://www.ncbi.nlm.nih.gov/gene/?term=RB226 RB2260 RB2260 RB2260 1187169 1187276 - hypothetical protein gene gene1189 http://www.ncbi.nlm.nih.gov/gene/?term=RB2260 RB2261 RB2261 RB2261 1187245 1188873 - carboxypeptidase-related protein PMID: 10567266 best DB hits: BLAST: pir:C75455%3B carboxypeptidase-related protein - Deinococcus%3B E%3D1e-118 pir:E82699%3B carboxypeptidase related protein XF1282 [imported] -%3B E%3D8e-47 embl:CAA96915.1%3B (Z72725) ORF YGL203c [Saccharomyces cerevisiae]%3B E%3D1e-05 COG: DR0964%3B COG2939 Carboxypeptidase C (cathepsin A)%3B E%3D1e-119 gene gene1190 http://www.ncbi.nlm.nih.gov/gene/?term=RB2261 RB2262 RB2262 RB2262 1188777 1188965 - hypothetical protein gene gene1191 http://www.ncbi.nlm.nih.gov/gene/?term=RB2262 RB2263 RB2263 RB2263 1188804 1188956 + hypothetical protein gene gene1192 http://www.ncbi.nlm.nih.gov/gene/?term=RB2263 RB2264 RB2264 RB2264 1189102 1189608 + large-conductance mechanosensitive channel PMID: 9632260 best DB hits: BLAST: swissprot:O68284%3B MSCL_ERWCA LARGE-CONDUCTANCE MECHANOSENSITIVE%3B E%3D2e-13 pir:F82855%3B large-conductance mechanosensitive channel XF0039%3B E%3D4e-13 pir:F83069%3B conductance mechanosensitive channel PA4614 [imported] -%3B E%3D2e-12 COG: XF0039%3B COG1970 Large-conductance mechanosensitive channel%3B E%3D4e-14 PFAM: PF01741%3B Large-conductance mechanosens%3B E%3D1.4e-22 gene gene1193 http://www.ncbi.nlm.nih.gov/gene/?term=RB2264 RB2265 RB2265 RB2265 1189523 1190518 + lipase/esterase PMID: 10567266 best DB hits: BLAST: pir:B75555%3B probable lipaseesterase - Deinococcus radiodurans%3B E%3D4e-09 pir:E70914%3B probable lipO protein - Mycobacterium tuberculosis%3B E%3D2e-05 swissprot:P26223%3B XYNB_BUTFI ENDO-1%2C4-BETA-XYLANASE B (XYLANASE B)%3B E%3D3e-04 COG: DR0133%3B COG0657 Acetyl esterase%3B E%3D4e-10 PFAM: PF00326%3B Prolyl oligopeptidase%3B E%3D0.067 PF01738%3B Dienelactone hydrolase%3B E%3D0.00016 PF00561%3B alpha/beta hydrolase fold%3B E%3D0.17 gene gene1194 http://www.ncbi.nlm.nih.gov/gene/?term=RB2265 RB2268 RB2268 msrB msrB 1190541 1191389 - peptide methionine sulfoxide reductase PMID: 9278503 best DB hits: BLAST: pir:C81315%3B hypothetical protein Cj1112c [imported] - Campylobacter%3B E%3D9e-33 embl:CAB80845.1%3B (AL161501) protein [Arabidopsis%3B E%3D4e-27 gb:AAD03449.1%3B (AF118223) contains similarity to Methanobacterium%3B E%3D5e-27 COG: Cj1112c%3B COG0229 Conserved domain frequently associated with peptide%3B E%3D8e-34 VNG1404G%3B COG0229 Conserved domain frequently associated with%3B E%3D5e-19 XF0849%3B COG0229 Conserved domain frequently associated with peptide%3B E%3D2e-17 PFAM: PF01641%3B Domain of unknown function DUF25%3B E%3D3.7e-46 gene gene1195 http://www.ncbi.nlm.nih.gov/gene/?term=RB2268 RB2269 RB2269 RB2269 1191509 1192471 - hypothetical protein PMID: 8590279 best DB hits: BLAST: swissprot:Q55979%3B Y712_SYNY3 HYPOTHETICAL 35.1 KD PROTEIN SLR0712%3B E%3D2e-23 gb:AAF20821.1%3B AF199025_2 (AF199025) LpiA [Sinorhizobium meliloti]%3B E%3D4e-17 gb:AAG55159.1%3B AE005259_10 (AE005259) orf%2C hypothetical protein%3B E%3D6e-14 COG: slr0712%3B COG0392 Predicted integral membrane protein%3B E%3D2e-24 gene gene1196 http://www.ncbi.nlm.nih.gov/gene/?term=RB2269 RB227 RB227 RB227 120858 121037 + hypothetical protein gene gene127 http://www.ncbi.nlm.nih.gov/gene/?term=RB227 RB2272 RB2272 RB2272 1192508 1193089 - hypothetical protein gene gene1197 http://www.ncbi.nlm.nih.gov/gene/?term=RB2272 RB2274 RB2274 RB2274 1192939 1193331 - hypothetical protein gene gene1198 http://www.ncbi.nlm.nih.gov/gene/?term=RB2274 RB2277 RB2277 RB2277 1193351 1193566 - hypothetical protein gene gene1199 http://www.ncbi.nlm.nih.gov/gene/?term=RB2277 RB2278 RB2278 RB2278 1193534 1195039 + 3-phosphoshikimate 1-carboxyvinyltransferase PMID: 3481024 best DB hits: BLAST: gb:AAB82633.1%3B (AC002387) 5-enolpyruvylshikimate-3-phosphate%3B E%3D1e-73 pir:XUMUVS%3B 3-phosphoshikimate 1-carboxyvinyltransferase (EC%3B E%3D1e-72 swissprot:P05466%3B AROA_ARATH 3-PHOSPHOSHIKIMATE%3B E%3D1e-72 COG: VC1732%3B COG0128 5-enolpyruvylshikimate-3-phosphate synthase%3B E%3D2e-70 PFAM: PF00275%3B EPSP synthase (3-phosphoshikim%3B E%3D5.8e-128 gene gene1200 http://www.ncbi.nlm.nih.gov/gene/?term=RB2278 RB2279 RB2279 RB2279 1195055 1195816 + hypothetical protein gene gene1201 http://www.ncbi.nlm.nih.gov/gene/?term=RB2279 RB2280 RB2280 RB2280 1195824 1196060 - hypothetical protein gene gene1202 http://www.ncbi.nlm.nih.gov/gene/?term=RB2280 RB2281 RB2281 RB2281 1196032 1196964 + hypothetical protein gene gene1203 http://www.ncbi.nlm.nih.gov/gene/?term=RB2281 RB2282 RB2282 RB2282 1196961 1197128 + hypothetical protein gene gene1204 http://www.ncbi.nlm.nih.gov/gene/?term=RB2282 RB2283 RB2283 RB2283 1197102 1197719 - hypothetical protein gene gene1205 http://www.ncbi.nlm.nih.gov/gene/?term=RB2283 RB2284 RB2284 RB2284 1197486 1198511 + transposase PMID: 10761919 best DB hits: BLAST: gb:AAC09305.1%3B (AF047044) transposase [Nostoc sp. PCC%3B E%3D2e-41 pir:A32816%3B hypothetical protein%2C 33K - Pseudomonas atlantica%3B E%3D7e-35 pir:B81886%3B probable transposase NMA1185 [imported] - Neisseria%3B E%3D1e-30 PFAM: PF01548%3B Transposase%3B E%3D2.2e-05 PF02371%3B Transposase IS116/IS110/IS902%3B E%3D1.3e-25 gene gene1206 http://www.ncbi.nlm.nih.gov/gene/?term=RB2284 RB2287 RB2287 RB2287 1198829 1199020 - hypothetical protein gene gene1207 http://www.ncbi.nlm.nih.gov/gene/?term=RB2287 RB2288 RB2288 RB2288 1198969 1199172 + hypothetical protein gene gene1208 http://www.ncbi.nlm.nih.gov/gene/?term=RB2288 RB229 RB229 RB229 121025 122782 - signal peptide gene gene128 http://www.ncbi.nlm.nih.gov/gene/?term=RB229 RB2290 RB2290 RB2290 1199219 1199341 + hypothetical protein gene gene1209 http://www.ncbi.nlm.nih.gov/gene/?term=RB2290 RB2291 RB2291 parA parA 1199317 1200063 + chromosome partitioning protein parA PMID: 9054507 best DB hits: BLAST: swissprot:P37522%3B SOJ_BACSU SPORULATION INITIATION INHIBITOR%3B E%3D8e-50 swissprot:Q9K5N0%3B SOJ_BACHD SPORULATION INITIATION INHIBITOR%3B E%3D6e-48 swissprot:O83296%3B SOJ_TREPA PROTEIN SOJ HOMOLOG ----- pir:%3B E%3D6e-48 COG: BS_soj%3B COG1192 ATPases involved in chromosome partitioning%3B E%3D8e-51 PFAM: PF00142%3B 4Fe-4S iron sulfur cluster bindin%3B E%3D0.00021 PF02374%3B Anion-transporting ATPase%3B E%3D0.013 PF00991%3B ParA family ATPase%3B E%3D4.9e-21 gene gene1210 http://www.ncbi.nlm.nih.gov/gene/?term=RB2291 RB2296 RB2296 parB parB 1200056 1201045 + chromosome partitioning protein parB PMID: 9634230 best DB hits: BLAST: swissprot:O53595%3B PARB_MYCTU PROBABLE CHROMOSOME PARTITIONING%3B E%3D6e-38 swissprot:P31857%3B PARB_PSEPU PROBABLE CHROMOSOME PARTITIONING%3B E%3D3e-37 swissprot:Q50201%3B PARB_MYCLE PROBABLE CHROMOSOME PARTITIONING%3B E%3D3e-37 COG: Rv3917c%3B COG1475 Predicted transcriptional regulators%3B E%3D5e-39 PFAM: PF02195%3B ParB-like nuclease domain%3B E%3D4.8e-30 PF01381%3B Helix-turn-helix%3B E%3D0.3 gene gene1211 http://www.ncbi.nlm.nih.gov/gene/?term=RB2296 RB2297 RB2297 RB2297 1201195 1201509 - hypothetical protein gene gene1212 http://www.ncbi.nlm.nih.gov/gene/?term=RB2297 RB2298 RB2298 RB2298 1201605 1202012 - hypothetical protein gene gene1213 http://www.ncbi.nlm.nih.gov/gene/?term=RB2298 RB2299 RB2299 RB2299 1201943 1204336 + serine/threonine-protein kinase PMID: 9634230 best DB hits: BLAST: pir:G71532%3B probable threoninetyrosine-specific protein kinase (EC%3B E%3D2e-31 gb:AAF73573.1%3B (AE002326) serinethreonine protein kinase%3B E%3D2e-31 pir:D83637%3B serinethreonine protein kinase PpkA PA0074 [imported] -%3B E%3D6e-28 COG: CT301_1%3B COG0515 Serine/threonine protein kinases%3B E%3D2e-32 PFAM: PF00069%3B Protein kinase domain%3B E%3D5.7e-13 PF00989%3B PAS domain%3B E%3D3.8e-06 PF00785%3B PAC motif%3B E%3D0.74 gene gene1214 http://www.ncbi.nlm.nih.gov/gene/?term=RB2299 RB2302 RB2302 RB2302 1204388 1204528 + hypothetical protein gene gene1215 http://www.ncbi.nlm.nih.gov/gene/?term=RB2302 RB2303 RB2303 rpsH rpsH 1204509 1205219 + RNA polymerase sigma-H factor PMID: 8432708 best DB hits: BLAST: pir:C82583%3B RNA polymerase sigma-H factor XF2239 [imported] -%3B E%3D1e-19 pir:S77368%3B transcription initiation factor sigma E slr1545 -%3B E%3D2e-19 gb:AAD42769.1%3B AF121849_1 (AF121849) SigG [Synechococcus sp. PCC%3B E%3D7e-18 COG: XF2239%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D1e-20 PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D1.5e-18 PF00140%3B Sigma-70 factor%3B E%3D0.55 gene gene1216 http://www.ncbi.nlm.nih.gov/gene/?term=RB2303 RB2304 RB2304 RB2304 1205216 1206748 + hypothetical protein gene gene1217 http://www.ncbi.nlm.nih.gov/gene/?term=RB2304 RB2306 RB2306 RB2306 1206782 1206907 + hypothetical protein gene gene1218 http://www.ncbi.nlm.nih.gov/gene/?term=RB2306 RB2308 RB2308 RB2308 1206969 1208933 + signal peptide gene gene1219 http://www.ncbi.nlm.nih.gov/gene/?term=RB2308 RB2310 RB2310 RB2310 1209222 1209545 - hypothetical protein gene gene1221 http://www.ncbi.nlm.nih.gov/gene/?term=RB2310 RB2312 RB2312 RB2312 1209542 1209682 - hypothetical protein gene gene1222 http://www.ncbi.nlm.nih.gov/gene/?term=RB2312 RB2314 RB2314 RB2314 1209644 1209892 + hypothetical protein gene gene1223 http://www.ncbi.nlm.nih.gov/gene/?term=RB2314 RB2316 RB2316 RB2316 1210048 1210587 - signal peptide gene gene1224 http://www.ncbi.nlm.nih.gov/gene/?term=RB2316 RB2317 RB2317 RB2317 1210643 1211131 - hypothetical protein gene gene1225 http://www.ncbi.nlm.nih.gov/gene/?term=RB2317 RB2319 RB2319 RB2319 1211152 1211427 + hypothetical protein gene gene1226 http://www.ncbi.nlm.nih.gov/gene/?term=RB2319 RB2320 RB2320 RB2320 1211269 1211568 - hypothetical protein gene gene1227 http://www.ncbi.nlm.nih.gov/gene/?term=RB2320 RB2321 RB2321 RB2321 1211620 1212345 - hypothetical protein gene gene1228 http://www.ncbi.nlm.nih.gov/gene/?term=RB2321 RB2326 RB2326 RB2326 1212437 1212778 - hypothetical protein gene gene1229 http://www.ncbi.nlm.nih.gov/gene/?term=RB2326 RB2327 RB2327 RB2327 1212750 1212875 + hypothetical protein gene gene1230 http://www.ncbi.nlm.nih.gov/gene/?term=RB2327 RB2328 RB2328 RB2328 1213057 1213398 - hypothetical protein gene gene1231 http://www.ncbi.nlm.nih.gov/gene/?term=RB2328 RB2329 RB2329 RB2329 1213386 1213925 - signal peptide gene gene1232 http://www.ncbi.nlm.nih.gov/gene/?term=RB2329 RB233 RB233 RB233 122781 123017 + hypothetical protein gene gene129 http://www.ncbi.nlm.nih.gov/gene/?term=RB233 RB2330 RB2330 RB2330 1214014 1214565 - hypothetical protein gene gene1233 http://www.ncbi.nlm.nih.gov/gene/?term=RB2330 RB2331 RB2331 RB2331 1214687 1215088 - hypothetical protein gene gene1234 http://www.ncbi.nlm.nih.gov/gene/?term=RB2331 RB2334 RB2334 RB2334 1215181 1215450 - hypothetical protein gene gene1235 http://www.ncbi.nlm.nih.gov/gene/?term=RB2334 RB2335 RB2335 RB2335 1215464 1215610 + hypothetical protein gene gene1236 http://www.ncbi.nlm.nih.gov/gene/?term=RB2335 RB2336 RB2336 RB2336 1215693 1215929 - hypothetical protein gene gene1237 http://www.ncbi.nlm.nih.gov/gene/?term=RB2336 RB2337 RB2337 RB2337 1216113 1216652 - hypothetical protein gene gene1238 http://www.ncbi.nlm.nih.gov/gene/?term=RB2337 RB2338 RB2338 RB2338 1216797 1216943 + hypothetical protein gene gene1239 http://www.ncbi.nlm.nih.gov/gene/?term=RB2338 RB2339 RB2339 RB2339 1217004 1217573 - hypothetical protein PMID: 10567266 best DB hits: BLAST: pir:D75339%3B hypothetical protein - Deinococcus radiodurans (strain%3B E%3D9e-22 gene gene1240 http://www.ncbi.nlm.nih.gov/gene/?term=RB2339 RB2340 RB2340 RB2340 1217548 1217679 - hypothetical protein gene gene1241 http://www.ncbi.nlm.nih.gov/gene/?term=RB2340 RB2341 RB2341 RB2341 1217720 1217932 - signal peptide gene gene1242 http://www.ncbi.nlm.nih.gov/gene/?term=RB2341 RB2342 RB2342 RB2342 1217901 1218119 + hypothetical protein gene gene1243 http://www.ncbi.nlm.nih.gov/gene/?term=RB2342 RB2343 RB2343 RB2343 1218233 1218667 - signal peptide gene gene1244 http://www.ncbi.nlm.nih.gov/gene/?term=RB2343 RB2344 RB2344 RB2344 1218661 1218927 + hypothetical protein gene gene1245 http://www.ncbi.nlm.nih.gov/gene/?term=RB2344 RB2345 RB2345 RB2345 1218758 1218946 - hypothetical protein gene gene1246 http://www.ncbi.nlm.nih.gov/gene/?term=RB2345 RB2346 RB2346 RB2346 1218937 1219605 - hypothetical protein gene gene1247 http://www.ncbi.nlm.nih.gov/gene/?term=RB2346 RB2349 RB2349 RB2349 1219602 1220855 - hypothetical protein gene gene1248 http://www.ncbi.nlm.nih.gov/gene/?term=RB2349 RB2350 RB2350 RB2350 1220890 1221003 + hypothetical protein gene gene1249 http://www.ncbi.nlm.nih.gov/gene/?term=RB2350 RB2351 RB2351 RB2351 1220991 1221392 + hypothetical protein gene gene1250 http://www.ncbi.nlm.nih.gov/gene/?term=RB2351 RB2353 RB2353 RB2353 1221322 1221696 - signal peptide gene gene1251 http://www.ncbi.nlm.nih.gov/gene/?term=RB2353 RB2355 RB2355 RB2355 1221808 1222320 - acetyltransferase PMID: 8682784 best DB hits: BLAST: ddbj:BAB05587.1%3B (AP001513) BH1868~~unknown conserved protein%3B E%3D7e-20 pir:T30571%3B hypothetical protein - Bacillus megaterium -----%3B E%3D3e-16 swissprot:P49855%3B YKKB_BACSU HYPOTHETICAL 20.1 KD PROTEIN IN%3B E%3D6e-16 COG: BH1868%3B COG1670 Acetyltransferases%2C including N-acetylases of%3B E%3D7e-21 PFAM: PF00583%3B Acetyltransferase (GNAT) family%3B E%3D6.3e-12 gene gene1252 http://www.ncbi.nlm.nih.gov/gene/?term=RB2355 RB2357 RB2357 RB2357 1222268 1222534 - hypothetical protein gene gene1253 http://www.ncbi.nlm.nih.gov/gene/?term=RB2357 RB2358 RB2358 RB2358 1222494 1222691 + hypothetical protein gene gene1254 http://www.ncbi.nlm.nih.gov/gene/?term=RB2358 RB2359 RB2359 RB2359 1222688 1222876 - hypothetical protein gene gene1255 http://www.ncbi.nlm.nih.gov/gene/?term=RB2359 RB236 RB236 RB236 123018 124316 + hydrolase best DB hits: BLAST: pir:S74628%3B hypothetical protein slr1772 - Synechocystis sp. (strain%3B E%3D6e-17 pir:E82406%3B probable hydrolase VCA0877 [imported] - Vibrio cholerae%3B E%3D4e-13 gb:AAF67801.1%3B AF148138_1 (AF148138) bile salt hydrolase%3B E%3D0.028 COG: slr1772%3B COG3049 Penicillin V acylase and related amidases%3B E%3D5e-18 PFAM: PF02275%3B Choloylglycine hydrolase%3B E%3D0.47 gene gene130 http://www.ncbi.nlm.nih.gov/gene/?term=RB236 RB2360 RB2360 RB2360 1223001 1223153 - hypothetical protein gene gene1256 http://www.ncbi.nlm.nih.gov/gene/?term=RB2360 RB2361 RB2361 RB2361 1223128 1223244 + hypothetical protein gene gene1257 http://www.ncbi.nlm.nih.gov/gene/?term=RB2361 RB2362 RB2362 RB2362 1223386 1223646 - hypothetical protein gene gene1258 http://www.ncbi.nlm.nih.gov/gene/?term=RB2362 RB2364 RB2364 RB2364 1223863 1224651 + hypothetical protein PMID: 12004073 best DB hits: BLAST: pir:A72359%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D0.033 gb:AAA02747.1%3B (L13655) membrane protein [Saccharum hybrid%3B E%3D0.055 gb:AAF88090.1%3B AC025417_18 (AC025417) T12C24.28 [Arabidopsis%3B E%3D0.057 COG: TM0584%3B COG0705 Uncharacterized membrane protein (homolog of%3B E%3D0.003 PFAM: PF01694%3B Rhomboid family%3B E%3D3.4e-07 gene gene1259 http://www.ncbi.nlm.nih.gov/gene/?term=RB2364 RB2365 RB2365 RB2365 1224623 1226167 + hypothetical protein gene gene1260 http://www.ncbi.nlm.nih.gov/gene/?term=RB2365 RB2367 RB2367 RB2367 1226195 1228564 - sulfatase atsD best DB hits: BLAST: pir:B70535%3B probable sulfatase (EC 3.1.6.-) atsD - Mycobacterium%3B E%3D0.0 pir:E70533%3B probable sulfatase (EC 3.1.6.-) atsB - Mycobacterium%3B E%3D1e-160 pir:B70643%3B probable sulfatase (EC 3.1.6.-) atsA - Mycobacterium%3B E%3D1e-137 COG: Rv0663%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D0.0 PFAM: PF00884%3B Sulfatase%3B E%3D2e-129 gene gene1261 http://www.ncbi.nlm.nih.gov/gene/?term=RB2367 RB2369 RB2369 RB2369 1228604 1229008 - hypothetical protein gene gene1262 http://www.ncbi.nlm.nih.gov/gene/?term=RB2369 RB2370 RB2370 RB2370 1229023 1229187 - hypothetical protein gene gene1263 http://www.ncbi.nlm.nih.gov/gene/?term=RB2370 RB2371 RB2371 RB2371 1229165 1229797 - hypothetical protein gene gene1264 http://www.ncbi.nlm.nih.gov/gene/?term=RB2371 RB2372 RB2372 RB2372 1229953 1230129 + hypothetical protein gene gene1265 http://www.ncbi.nlm.nih.gov/gene/?term=RB2372 RB2373 RB2373 fdh fdh 1230126 1231334 - formaldehyde dehydrogenase PMID: 8169197 best DB hits: BLAST: pir:F70090%3B probable formaldehyde dehydrogenase (EC 1.2.1.46) yycR -%3B E%3D1e-151 swissprot:P46154%3B FADH_PSEPU GLUTATHIONE-INDEPENDENT FORMALDEHYDE%3B E%3D1e-140 pir:E82969%3B glutathione-independent formaldehyde dehydrogenase%3B E%3D1e-138 COG: BS_yycR%3B COG1063 Threonine dehydrogenase and related Zn-dependent%3B E%3D1e-152 PFAM: PF01262%3B Alanine dehydrogenase/pyridine nucl%3B E%3D0.17 PF00107%3B Zinc-binding dehydrogenases%3B E%3D3.1e-48 gene gene1266 http://www.ncbi.nlm.nih.gov/gene/?term=RB2373 RB2374 RB2374 RB2374 1231392 1231505 + hypothetical protein gene gene1267 http://www.ncbi.nlm.nih.gov/gene/?term=RB2374 RB2375 RB2375 RB2375 1231493 1231948 + hypothetical protein gene gene1268 http://www.ncbi.nlm.nih.gov/gene/?term=RB2375 RB2377 RB2377 atsA atsA 1231979 1236811 + arylsulfatase PMID: 7744061 best DB hits: BLAST: swissprot:P51691%3B ARS_PSEAE ARYLSULFATASE (ARYL-SULFATE%3B E%3D9e-73 pir:S69336%3B arylsulfatase (EC 3.1.6.1) - Pseudomonas aeruginosa%3B E%3D4e-71 pir:T45548%3B arylsulfatase (EC 3.1.6.1) [validated] - Klebsiella%3B E%3D2e-63 COG: PA0183%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D8e-74 PFAM: PF00884%3B Sulfatase%3B E%3D5.5e-93 gene gene1269 http://www.ncbi.nlm.nih.gov/gene/?term=RB2377 RB2378 RB2378 RB2378 1236812 1237018 + hypothetical protein gene gene1270 http://www.ncbi.nlm.nih.gov/gene/?term=RB2378 RB2379 RB2379 RB2379 1236816 1237034 - hypothetical protein gene gene1271 http://www.ncbi.nlm.nih.gov/gene/?term=RB2379 RB2381 RB2381 ibeB ibeB 1236988 1238832 - outer membrane lipoprotein IbeB PMID: 99242786 best DB hits: BLAST: gb:AAD30205.1%3B (AF094824) IbeB [Escherichia coli]%3B E%3D3e-33 swissprot:P77211%3B IBEB_ECOLI PROBABLE OUTER MEMBRANE LIPOPROTEIN%3B E%3D4e-33 gb:AAG54905.1%3B AE005237_1 (AE005237) resistance protein%3B E%3D1e-32 COG: ylcB%3B COG1538 Outer membrane protein%3B E%3D4e-34 PFAM: PF02321%3B Outer membrane efflux protein%3B E%3D1.3e-09 gene gene1272 http://www.ncbi.nlm.nih.gov/gene/?term=RB2381 RB2382 RB2382 RB2382 1238921 1239148 + hypothetical protein gene gene1273 http://www.ncbi.nlm.nih.gov/gene/?term=RB2382 RB2383 RB2383 mexB mexB 1239120 1242554 - multidrug resistance protein MexB PMID: 7968531 PMID: 10187844 PMID: 10984043 best DB hits: BLAST: pir:H83071%3B RND multidrug efflux transporter MexD PA4598 [imported]%3B E%3D7e-91 embl:CAC14595.1%3B (AJ252200) RND protein%3B E%3D2e-85 swissprot:P52002%3B MEXB_PSEAE MULTIDRUG RESISTANCE PROTEIN MEXB%3B E%3D6e-85 COG: PA4598%3B COG0841 Cation/multidrug efflux pump%3B E%3D7e-92 PFAM: PF00873%3B AcrB/AcrD/AcrF family%3B E%3D7.9e-188 gene gene1274 http://www.ncbi.nlm.nih.gov/gene/?term=RB2383 RB2384 RB2384 RB2384 1242500 1242697 - hypothetical protein gene gene1275 http://www.ncbi.nlm.nih.gov/gene/?term=RB2384 RB2386 RB2386 mexA mexA 1242734 1244320 - multidrug resistance protein MexA PMID: 7968531 best DB hits: BLAST: gb:AAD12178.1%3B (AF029405) periplasmic linker protein [Pseudomonas%3B E%3D8e-20 swissprot:P37636%3B YHIU_ECOLI HYPOTHETICAL 41.2 KD LIPOPROTEIN IN%3B E%3D3e-19 gb:AAG58654.1%3B AE005576_13 (AE005576) membrane protein%3B E%3D4e-19 COG: yhiU%3B COG0845 Membrane-fusion protein%3B E%3D3e-20 PFAM: PF00364%3B Biotin-requiring enzyme%3B E%3D0.0015 PF00529%3B HlyD family secretion protein%3B E%3D3.1e-06 gene gene1276 http://www.ncbi.nlm.nih.gov/gene/?term=RB2386 RB2391 RB2391 RB2391 1244298 1244843 - hypothetical protein gene gene1277 http://www.ncbi.nlm.nih.gov/gene/?term=RB2391 RB2394 RB2394 RB2394 1244920 1245630 - cytidylate kinase PMID: 9679194 best DB hits: BLAST: swissprot:O58988%3B KCY_PYRHO CYTIDYLATE KINASE (CK) (CYTIDINE%3B E%3D1e-04 swissprot:Q58071%3B KCY_METJA CYTIDYLATE KINASE (CK) (CYTIDINE%3B E%3D0.005 swissprot:O05982%3B KCY_SULAC CYTIDYLATE KINASE (CK) (CYTIDINE%3B E%3D0.005 COG: PH1265%3B COG1102 Cytidylate kinase 2%3B E%3D1e-05 gene gene1278 http://www.ncbi.nlm.nih.gov/gene/?term=RB2394 RB2395 RB2395 RB2395 1245553 1246050 + hypothetical protein gene gene1279 http://www.ncbi.nlm.nih.gov/gene/?term=RB2395 RB2396 RB2396 atoC atoC 1246032 1247489 + acetoacetate metabolism regulatory protein PMID: 9278503 PMID: 9097040 PMID: 8346225 best DB hits: BLAST: swissprot:Q06065%3B ATOC_ECOLI ACETOACETATE METABOLISM REGULATORY%3B E%3D4e-87 gb:AAG45333.1%3B AF273214_1 (AF273214) SasR [Myxococcus xanthus]%3B E%3D2e-85 swissprot:P14375%3B HYDG_ECOLI transcriptional regulator%3B E%3D1e-81 COG: atoC%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D4e-88 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D6.6e-32 PF00004%3B ATPase associated with va%3B E%3D0.008 PF00158%3B Sigma-54 interaction domain%3B E%3D9.4e-122 gene gene1280 http://www.ncbi.nlm.nih.gov/gene/?term=RB2396 RB2398 RB2398 RB2398 1247520 1248404 - hypothetical protein gene gene1281 http://www.ncbi.nlm.nih.gov/gene/?term=RB2398 RB2399 RB2399 RB2399 1248366 1248524 + hypothetical protein gene gene1282 http://www.ncbi.nlm.nih.gov/gene/?term=RB2399 RB24 RB24 RB24 11131 13935 + L-sorbosone dehydrogenase best DB hits: BLAST: pir:F75417%3B L-sorbosone dehydrogenase - Deinococcus radiodurans%3B E%3D0.13 embl:CAB94635.1%3B (AL359215) secreted glycosyl hydrolase.%3B E%3D0.26 PFAM: PF00034%3B Cytochrome c%3B E%3D0.35 gene gene12 http://www.ncbi.nlm.nih.gov/gene/?term=RB24 RB2400 RB2400 RB2400 1248499 1248699 - hypothetical protein gene gene1283 http://www.ncbi.nlm.nih.gov/gene/?term=RB2400 RB2401 RB2401 cpo cpo 1248679 1250799 + vanadium chloroperoxidase PMID: 7744081 best DB hits: BLAST: swissprot:P49053%3B PRXC_CURIN VANADIUM CHLOROPEROXIDASE (VCPO)%3B E%3D2e-25 pdb:1VNS%3B Recombinant Apo-Chloroperoxidase From Curvularia%3B E%3D2e-25 pdb:1VNF%3B Chloroperoxidase From The Fungus Curvularia%3B E%3D1e-24 PFAM: PF00404%3B Dockerin type I repeat%3B E%3D0.4 PF02328%3B Vanadium chloroperoxidase%3B E%3D1.5e-20 gene gene1284 http://www.ncbi.nlm.nih.gov/gene/?term=RB2401 RB2403 RB2403 uxuB uxuB 1250881 1252389 - D-mannonate oxidoreductase PMID: 7610040 best DB hits: BLAST: pir:D83353%3B mannitol dehydrogenase PA2342 [imported] - Pseudomonas%3B E%3D1e-116 gb:AAC04472.1%3B (AF007800) mannitol dehydrogenase [Pseudomonas%3B E%3D1e-111 embl:CAA96356.1%3B (Z71688) ORF YNR073c [Saccharomyces cerevisiae]%3B E%3D1e-102 COG: PA2342%3B COG0246 Mannitol-1-phosphate/altronate dehydrogenases%3B E%3D1e-117 PFAM: PF01232%3B Mannitol dehydrogenase%3B E%3D9.3e-176 gene gene1285 http://www.ncbi.nlm.nih.gov/gene/?term=RB2403 RB2404 RB2404 RB2404 1252408 1254135 - hypothetical protein PMID: 10086841 gene gene1286 http://www.ncbi.nlm.nih.gov/gene/?term=RB2404 RB2408 RB2408 RB2408 1254300 1255103 + hypothetical protein PMID: 9687406 best DB hits: BLAST: embl:CAB61226.1%3B (Y17305) hypothetical protein [Bacillus%3B E%3D2e-15 swissprot:P43965%3B YAFM_HAEIN HYPOTHETICAL PROTEIN HI0217 -----%3B E%3D4e-04 pir:E81971%3B hypothetical protein NMA0532 [imported] - Neisseria%3B E%3D4e-04 COG: HI0217%3B COG1943 Predicted transposase%3B E%3D3e-05 PFAM: PF00637%3B 7-fold repeat in Clathrin and%3B E%3D0.77 PF02178%3B AT hook motif%3B E%3D0.72 gene gene1287 http://www.ncbi.nlm.nih.gov/gene/?term=RB2408 RB241 RB241 RB241 124403 124546 + hypothetical protein gene gene131 http://www.ncbi.nlm.nih.gov/gene/?term=RB241 RB2412 RB2412 RB2412 1255432 1256535 + signal peptide gene gene1288 http://www.ncbi.nlm.nih.gov/gene/?term=RB2412 RB2414 RB2414 RB2414 1256570 1256716 + hypothetical protein gene gene1289 http://www.ncbi.nlm.nih.gov/gene/?term=RB2414 RB2415 RB2415 RB2415 1256739 1256849 + hypothetical protein gene gene1290 http://www.ncbi.nlm.nih.gov/gene/?term=RB2415 RB2416 RB2416 RB2416 1257029 1258198 - transglutaminase PMID: 10567266 best DB hits: BLAST: pir:A75496%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D2e-04 pir:C71139%3B hypothetical protein PH0326 - Pyrococcus horikoshii%3B E%3D2e-04 pir:A72430%3B hypothetical protein - Thermotoga maritima (strain MSB8)%3B E%3D0.002 COG: DR0620_2%3B COG1305 transglutaminases%2C cysteine%3B E%3D1e-05 PFAM: PF01841%3B Transglutaminase-like superfam%3B E%3D0.014 gene gene1291 http://www.ncbi.nlm.nih.gov/gene/?term=RB2416 RB2418 RB2418 RB2418 1258302 1258877 - signal peptide gene gene1292 http://www.ncbi.nlm.nih.gov/gene/?term=RB2418 RB2420 RB2420 RB2420 1258838 1260481 + myo-inositol-2-dehydrogenase best DB hits: BLAST: gb:AAD50452.1%3B AF170704_2 (AF170704) SpcB [Streptomyces%3B E%3D1e-04 gb:AAF63338.1%3B AF244574_1 (AF244574) myo-inositol-2-dehydrogenase%3B E%3D3e-04 gb:AAD13550.1%3B (AF080235) oxidoreductase homolog [Streptomyces%3B E%3D0.001 COG: BH0710%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D2e-04 PFAM: PF01408%3B Oxidoreductase%2C NAD-bind%3B E%3D5.8e-11 gene gene1293 http://www.ncbi.nlm.nih.gov/gene/?term=RB2420 RB2424 RB2424 RB2424 1260478 1260759 + hypothetical protein gene gene1294 http://www.ncbi.nlm.nih.gov/gene/?term=RB2424 RB2425 RB2425 RB2425 1260766 1261074 + hypothetical protein gene gene1295 http://www.ncbi.nlm.nih.gov/gene/?term=RB2425 RB2426 RB2426 RB2426 1261010 1262740 - hypothetical protein PMID: 8905232 best DB hits: BLAST: swissprot:P77381%3B YBES_ECOLI HYPOTHETICAL 55.3 KDA PROTEIN IN%3B E%3D0.093 gb:AAG54981.1%3B AE005243_10 (AE005243) enzyme of%3B E%3D0.31 gb:AAG53090.1%3B (AF284647) phosphoprotein [Newcastle disease%3B E%3D0.67 gene gene1296 http://www.ncbi.nlm.nih.gov/gene/?term=RB2426 RB2428 RB2428 RB2428 1262854 1263540 - hypothetical protein gene gene1297 http://www.ncbi.nlm.nih.gov/gene/?term=RB2428 RB2429 RB2429 dnaK dnaK 1263537 1265300 - chaperone protein HscC PMID: 9735342 best DB hits: BLAST: swissprot:P77319%3B HSCC_ECOLI CHAPERONE PROTEIN HSCC (HSC62)%3B E%3D1e-92 gb:AAG54984.1%3B AE005244_2 (AE005244) dnaK protein%3B E%3D3e-91 embl:CAA06391.1%3B (AJ005129) dnaK [Thermotoga maritima]%3B E%3D3e-88 COG: ybeW%3B COG0443 Molecular chaperone%3B E%3D1e-93 PFAM: PF01869%3B BadF/BadG/BcrA/BcrD ATPase fa%3B E%3D0.37 PF00012%3B Hsp70 protein%3B E%3D9.1e-147 gene gene1298 http://www.ncbi.nlm.nih.gov/gene/?term=RB2429 RB2431 RB2431 RB2431 1265293 1265493 - hypothetical protein gene gene1299 http://www.ncbi.nlm.nih.gov/gene/?term=RB2431 RB2432 RB2432 RB2432 1265557 1266390 + hypothetical protein best DB hits: BLAST: gb:AAD20116.1%3B (AC006201) unknown protein [Arabidopsis thaliana]%3B E%3D0.030 pir:T16263%3B hypothetical protein F35D11.3 - Caenorhabditis elegans%3B E%3D0.096 pir:T39047%3B hypothetical protein SPAC6F6.13c - fission yeast%3B E%3D0.12 gene gene1300 http://www.ncbi.nlm.nih.gov/gene/?term=RB2432 RB2434 RB2434 RB2434 1266402 1266647 - RNA-binding protein PMID: 10567266 best DB hits: BLAST: pir:H75402%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D7e-12 pir:E82441%3B conserved hypothetical protein VCA0582 [imported] -%3B E%3D2e-05 pir:C81983%3B hypothetical protein NMA0633 [imported] - Neisseria%3B E%3D2e-04 COG: DR1391%3B COG2501 Uncharacterized ACR%3B E%3D7e-13 PFAM: PF01479%3B S4 domain%3B E%3D2.8e-06 gene gene1301 http://www.ncbi.nlm.nih.gov/gene/?term=RB2434 RB2435 RB2435 RB2435 1266644 1267720 - hypothetical protein best DB hits: BLAST: pir:T45676%3B hypothetical protein F14P22.150 - Arabidopsis thaliana%3B E%3D0.043 PFAM: PF02455%3B Hexon-associated protein (III%3B E%3D0.046 gene gene1302 http://www.ncbi.nlm.nih.gov/gene/?term=RB2435 RB2436 RB2436 RB2436 1267766 1268971 - hypothetical protein gene gene1303 http://www.ncbi.nlm.nih.gov/gene/?term=RB2436 RB244 RB244 RB244 124632 125636 + signal peptide best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene132 http://www.ncbi.nlm.nih.gov/gene/?term=RB244 RB2440 RB2440 RB2440 1269211 1273044 - glucosesorbosone dehydrogenase PMID: 8905231 best DB hits: BLAST: pir:A58519%3B hypothetical 345 protein - Streptomyces coelicolor%3B E%3D2e-15 pir:T34929%3B hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces%3B E%3D1e-14 pir:T17478%3B hypothetical protein PCZA361.11 - Amycolatopsis orientalis%3B E%3D2e-14 COG: PA1112%3B COG2133 Glucose/sorbosone dehydrogenases%3B E%3D7e-13 PFAM: PF00138%3B Legume lectins alpha domain%3B E%3D0.059 gene gene1304 http://www.ncbi.nlm.nih.gov/gene/?term=RB2440 RB2442 RB2442 RB2442 1273297 1276449 - hypothetical protein best DB hits: PFAM: PF00404%3B Dockerin type I repeat%3B E%3D0.0038 gene gene1305 http://www.ncbi.nlm.nih.gov/gene/?term=RB2442 RB2447 RB2447 RB2447 1276508 1276789 - hypothetical protein gene gene1306 http://www.ncbi.nlm.nih.gov/gene/?term=RB2447 RB2448 RB2448 RB2448 1276780 1278513 + signal peptide gene gene1307 http://www.ncbi.nlm.nih.gov/gene/?term=RB2448 RB2451 RB2451 RB2451 1278610 1278882 + hypothetical protein gene gene1308 http://www.ncbi.nlm.nih.gov/gene/?term=RB2451 RB2454 RB2454 RB2454 1278899 1279582 + signal peptide gene gene1309 http://www.ncbi.nlm.nih.gov/gene/?term=RB2454 RB2456 RB2456 RB2456 1279589 1279705 + signal peptide gene gene1310 http://www.ncbi.nlm.nih.gov/gene/?term=RB2456 RB2457 RB2457 RB2457 1279788 1280144 + hypothetical protein gene gene1311 http://www.ncbi.nlm.nih.gov/gene/?term=RB2457 RB2459 RB2459 RB2459 1280204 1280452 - hypothetical protein gene gene1312 http://www.ncbi.nlm.nih.gov/gene/?term=RB2459 RB246 RB246 RB246 125688 126200 + signal peptide best DB hits: PFAM: PF02369%3B Bacterial Ig-like domain (group 1)%3B E%3D0.48 gene gene133 http://www.ncbi.nlm.nih.gov/gene/?term=RB246 RB2460 RB2460 RB2460 1280449 1281942 - hypothetical protein best DB hits: BLAST: pir:B69196%3B conserved hypothetical protein MTH72 - Methanobacterium%3B E%3D0.51 pir:T31314%3B hypothetical protein 2 - Cenarchaeum symbiosum -----%3B E%3D0.64 gb:AAB63645.1%3B (AC001645) DNA binding protein (CDC27SH) isolog%3B E%3D0.66 PFAM: PF00515%3B TPR Domain%3B E%3D0.017 gene gene1313 http://www.ncbi.nlm.nih.gov/gene/?term=RB2460 RB2461 RB2461 RB2461 1281939 1283837 - hypothetical protein gene gene1314 http://www.ncbi.nlm.nih.gov/gene/?term=RB2461 RB2462 RB2462 RB2462 1283825 1284007 + hypothetical protein best DB hits: BLAST: gb:AAF47944.1%3B (AE003482) CG13708 gene product [Drosophila%3B E%3D0.70 gene gene1315 http://www.ncbi.nlm.nih.gov/gene/?term=RB2462 RB2463 RB2463 RB2463 1284165 1284404 + hypothetical protein gene gene1316 http://www.ncbi.nlm.nih.gov/gene/?term=RB2463 RB2464 RB2464 epsB epsB 1284692 1287262 - capsular polysaccharide biosynthesis-like protein PMID: 7476194 best DB hits: BLAST: pir:G70066%3B capsular polysaccharide biosynthesis homolog ywqD -%3B E%3D2e-28 swissprot:Q45409%3B EPSB_BURSO EPS I POLYSACCHARIDE EXPORT PROTEIN%3B E%3D2e-28 pir:G82262%3B probable exopolysaccharide biosynthesis protein VC0937%3B E%3D8e-28 COG: BS_ywqD%3B COG0489 ATPases involved in chromosome partitioning%3B E%3D2e-29 VNG0946G%3B COG0455 ATPases involved in chromosome partitioning%3B E%3D3e-08 BH3027%3B COG2894 Septum formation inhibitor-activating ATPase%3B E%3D6e-08 PFAM: PF00142%3B 4Fe-4S iron sulfur cluster bindin%3B E%3D0.016 PF00991%3B ParA family ATPase%3B E%3D0.3 gene gene1317 http://www.ncbi.nlm.nih.gov/gene/?term=RB2464 RB2465 RB2465 RB2465 1287232 1287390 + hypothetical protein gene gene1318 http://www.ncbi.nlm.nih.gov/gene/?term=RB2465 RB2466 RB2466 RB2466 1287335 1287487 - hypothetical protein gene gene1319 http://www.ncbi.nlm.nih.gov/gene/?term=RB2466 RB2467 RB2467 RB2467 1287454 1287654 + hypothetical protein gene gene1320 http://www.ncbi.nlm.nih.gov/gene/?term=RB2467 RB2469 RB2469 RB2469 1288021 1288788 - glycosyltransferase-like protein PMID: 10931327 best DB hits: BLAST: embl:CAB63303.1%3B (AJ251712) glycosyltransferase-like protein%3B E%3D1e-47 embl:CAB63284.1%3B (AJ251713) glycosyltransferase-like protein%3B E%3D2e-47 gb:AAD47916.1%3B AF127522_3 (AF127522)%3B E%3D1e-39 COG: jhp0094%3B COG0463 Glycosyltransferases involved in cell wall%3B E%3D6e-32 RP339%3B COG0463 Glycosyltransferases involved in cell wall biogenesis%3B E%3D4e-04 PAB1314%3B COG1215 Glycosyltransferases%2C probably involved in cell%3B E%3D8e-04 PFAM: PF00535%3B Glycosyl transferase%3B E%3D1.9e-28 gene gene1321 http://www.ncbi.nlm.nih.gov/gene/?term=RB2469 RB2470 RB2470 RB2470 1288767 1289297 - colanic acid biosynthesis acetyltransferase WcaF acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit) gene gene1322 http://www.ncbi.nlm.nih.gov/gene/?term=RB2470 RB2471 RB2471 RB2471 1289514 1290824 - poly(glycerol-phosphate) alpha-glucosyltransferase PMID: 8905231 best DB hits: BLAST: pir:S74778%3B hypothetical protein slr1077 - Synechocystis sp. (strain%3B E%3D5e-34 gb:AAD43836.1%3B AF076290_6 (AF076290) mannosyltransferase%3B E%3D4e-16 embl:CAB43611.1%3B (AJ239004) galactosyl transferase [Streptococcus%3B E%3D9e-11 COG: slr1077%3B COG0438 Predicted glycosyltransferases%3B E%3D5e-35 PFAM: PF00534%3B Glycosyl transferases group 1%3B E%3D5e-21 gene gene1323 http://www.ncbi.nlm.nih.gov/gene/?term=RB2471 RB2472 RB2472 RB2472 1290912 1292252 - hypothetical protein gene gene1324 http://www.ncbi.nlm.nih.gov/gene/?term=RB2472 RB2473 RB2473 RB2473 1292292 1293422 - hexosyltransferase PMID: 10382966 best DB hits: BLAST: pir:D72511%3B probable hexosyltransferase (EC 2.4.1.-) APE2066%3B E%3D2e-09 ddbj:BAB06407.1%3B (AP001516)%3B E%3D1e-07 pir:E72354%3B probable hexosyltransferase (EC 2.4.1.-) TM0622 -%3B E%3D2e-06 COG: APE2066%3B COG0438 Predicted glycosyltransferases%3B E%3D1e-10 PFAM: PF00534%3B Glycosyl transferases group 1%3B E%3D1.2e-25 gene gene1325 http://www.ncbi.nlm.nih.gov/gene/?term=RB2473 RB2474 RB2474 RB2474 1293454 1294251 - hexosyltransferase PMID: 10360571 best DB hits: BLAST: pir:E72354%3B probable hexosyltransferase (EC 2.4.1.-) TM0622 -%3B E%3D3e-22 pir:C70036%3B capsular polysaccharide biosynthesis homolog yveN -%3B E%3D7e-12 pir:A82676%3B conserved hypothetical protein XF1470 [imported] -%3B E%3D2e-10 COG: TM0622%3B COG0438 Predicted glycosyltransferases%3B E%3D3e-23 PFAM: PF00534%3B Glycosyl transferases group 1%3B E%3D6.1e-38 gene gene1326 http://www.ncbi.nlm.nih.gov/gene/?term=RB2474 RB2475 RB2475 RB2475 1294233 1295438 + H repeat-containing transposase PMID: 9097039 best DB hits: BLAST: gb:AAG55028.1%3B AE005248_9 (AE005248) receptor%3B E%3D4e-61 gb:AAG54539.1%3B AE005200_1 (AE005200) Z0271 gene product%3B E%3D1e-60 swissprot:P28917%3B YDCC_ECOLI H REPEAT-ASSOCIATED PROTEIN IN%3B E%3D1e-60 PFAM: PF01811%3B Transposase%3B E%3D1.3e-65 gene gene1327 http://www.ncbi.nlm.nih.gov/gene/?term=RB2475 RB2477 RB2477 RB2477 1295422 1295793 - hypothetical protein gene gene1328 http://www.ncbi.nlm.nih.gov/gene/?term=RB2477 RB2478 RB2478 RB2478 1295756 1295872 + hypothetical protein gene gene1329 http://www.ncbi.nlm.nih.gov/gene/?term=RB2478 RB2479 RB2479 RB2479 1295862 1296683 - hypothetical protein PMID: 8905231 best DB hits: BLAST: pir:S77382%3B hypothetical protein sll1456 - Synechocystis sp. (strain%3B E%3D3e-12 pir:S76193%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D2e-08 pir:H70669%3B hypothetical protein Rv2955c - Mycobacterium%3B E%3D4e-07 COG: sll1456%3B COG0500 SAM-dependent methyltransferases%3B E%3D3e-13 gene gene1330 http://www.ncbi.nlm.nih.gov/gene/?term=RB2479 RB248 RB248 RB248 126264 126458 - hypothetical protein gene gene134 http://www.ncbi.nlm.nih.gov/gene/?term=RB248 RB2480 RB2480 RB2480 1296700 1296891 - hypothetical protein gene gene1331 http://www.ncbi.nlm.nih.gov/gene/?term=RB2480 RB2482 RB2482 RB2482 1296888 1298060 - hexosyltransferase PMID: 11259647 best DB hits: BLAST: pir:E72354%3B probable hexosyltransferase (EC 2.4.1.-) TM0622 -%3B E%3D0.001 gb:AAD19925.1%3B (AF105116) glucosyl transferase%3B E%3D0.002 embl:CAB75373.1%3B (AL139298) transferase [Streptomyces%3B E%3D0.002 COG: TM0622%3B COG0438 Predicted glycosyltransferases%3B E%3D9e-05 PFAM: PF00534%3B Glycosyl transferases group 1%3B E%3D1e-09 gene gene1332 http://www.ncbi.nlm.nih.gov/gene/?term=RB2482 RB2484 RB2484 RB2484 1298057 1299304 - glycosyltransferase PMID: 9308175 best DB hits: BLAST: gb:AAD43837.1%3B AF076290_7 (AF076290) glycosyltransferase%3B E%3D5e-17 gb:AAB84956.1%3B (AE000829) LPS biosynthesis RfbU related protein%3B E%3D3e-05 pir:H69158%3B LPS biosynthesis RfbU related protein - Methanobacterium%3B E%3D3e-05 COG: MTH450%3B COG0438 Predicted glycosyltransferases%3B E%3D3e-06 PFAM: PF00534%3B Glycosyl transferases group 1%3B E%3D5.8e-18 gene gene1333 http://www.ncbi.nlm.nih.gov/gene/?term=RB2484 RB2485 RB2485 RB2485 1299297 1300499 - hexosyltransferase PMID: 10360571 best DB hits: BLAST: pir:E72354%3B probable hexosyltransferase (EC 2.4.1.-) TM0622 -%3B E%3D5e-20 swissprot:Q9R9N1%3B LPSE_RHIME LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS%3B E%3D4e-10 swissprot:Q9R9N0%3B LPSD_RHIME LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS%3B E%3D1e-09 COG: TM0622%3B COG0438 Predicted glycosyltransferases%3B E%3D4e-21 PFAM: PF00534%3B Glycosyl transferases group 1%3B E%3D1.1e-22 gene gene1334 http://www.ncbi.nlm.nih.gov/gene/?term=RB2485 RB2487 RB2487 RB2487 1300487 1301380 - hypothetical protein PMID: 11214968 best DB hits: BLAST: pir:S76193%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D0.011 gb:AAB95303.1%3B (AC003105) unknown protein [Arabidopsis thaliana]%3B E%3D0.023 COG: sll1530%3B COG0500 SAM-dependent methyltransferases%3B E%3D0.001 gene gene1335 http://www.ncbi.nlm.nih.gov/gene/?term=RB2487 RB2489 RB2489 RB2489 1301458 1301658 - hypothetical protein gene gene1336 http://www.ncbi.nlm.nih.gov/gene/?term=RB2489 RB249 RB249 RB249 126492 128021 - transposase PMID: 10986268 best DB hits: BLAST: swissprot:P03835%3B YI41_ECOLI INSERTION ELEMENT IS4 HYPOTHETICAL%3B E%3D0.002 gb:AAC72261.1%3B (U91581) transposase [Lactococcus lactis%3B E%3D0.008 gb:AAF27554.1%3B (AF179847) transposase [Lactococcus%3B E%3D0.008 COG: yi41%3B COG3385 Predicted transposase%3B E%3D2e-04 PFAM: PF01609%3B Transposase (IS4 family)%3B E%3D0.024 gene gene135 http://www.ncbi.nlm.nih.gov/gene/?term=RB249 RB2490 RB2490 RB2490 1301627 1301758 - hypothetical protein gene gene1337 http://www.ncbi.nlm.nih.gov/gene/?term=RB2490 RB2491 RB2491 RB2491 1301755 1302201 - hypothetical protein best DB hits: BLAST: embl:CAB92986.1%3B (AL357152) hypothetical protein SCH18.03c%3B E%3D0.19 gene gene1338 http://www.ncbi.nlm.nih.gov/gene/?term=RB2491 RB2492 RB2492 RB2492 1302190 1302399 + hypothetical protein gene gene1339 http://www.ncbi.nlm.nih.gov/gene/?term=RB2492 RB2493 RB2493 RB2493 1302420 1303754 - LPS biosynthesis RfbU related protein best DB hits: BLAST: pir:D69143%3B LPS biosynthesis RfbU related protein - Methanobacterium%3B E%3D8e-18 embl:CAB01935.1%3B (Z79692) ExpE4 [Sinorhizobium meliloti]%3B E%3D2e-16 embl:CAB01932.1%3B (Z79692) ExpE7 [Sinorhizobium meliloti]%3B E%3D4e-13 COG: MTH338%3B COG0438 Predicted glycosyltransferases%3B E%3D8e-19 PFAM: PF00534%3B Glycosyl transferases group 1%3B E%3D1.3e-20 gene gene1340 http://www.ncbi.nlm.nih.gov/gene/?term=RB2493 RB2494 RB2494 RB2494 1303740 1303904 + hypothetical protein gene gene1341 http://www.ncbi.nlm.nih.gov/gene/?term=RB2494 RB2495 RB2495 RB2495 1303912 1304043 + hypothetical protein gene gene1342 http://www.ncbi.nlm.nih.gov/gene/?term=RB2495 RB2496 RB2496 RB2496 1304058 1304771 - hypothetical protein gene gene1343 http://www.ncbi.nlm.nih.gov/gene/?term=RB2496 RB2497 RB2497 RB2497 1304778 1304906 + hypothetical protein gene gene1344 http://www.ncbi.nlm.nih.gov/gene/?term=RB2497 RB2498 RB2498 RB2498 1304887 1305777 - methyltransferase PMID: 8843436 best DB hits: BLAST: embl:CAB92986.1%3B (AL357152) hypothetical protein SCH18.03c%3B E%3D7e-16 embl:CAB57489.1%3B (Y18930) hypothetical protein [Sulfolobus%3B E%3D3e-13 pir:S76193%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D1e-08 COG: sll1530%3B COG0500 SAM-dependent methyltransferases%3B E%3D1e-09 APE1011%3B COG2518 Protein-L-isoaspartate carboxylmethyltransferase%3B E%3D0.001 gene gene1345 http://www.ncbi.nlm.nih.gov/gene/?term=RB2498 RB2499 RB2499 RB2499 1305785 1306963 - glycosyl transferase PMID: 11206551 best DB hits: BLAST: gb:AAG57095.1%3B AE005429_6 (AE005429) glycosyl transferase%3B E%3D1e-20 gb:AAD47915.1%3B AF127522_2 (AF127522)%3B E%3D6e-18 pir:E70346%3B mannosyltransferase B - Aquifex aeolicus ----- gb:%3B E%3D1e-06 COG: aq_515%3B COG0438 Predicted glycosyltransferases%3B E%3D1e-07 PFAM: PF00534%3B Glycosyl transferases group 1%3B E%3D5.9e-06 gene gene1346 http://www.ncbi.nlm.nih.gov/gene/?term=RB2499 RB250 RB250 RB250 127991 128251 + hypothetical protein gene gene136 http://www.ncbi.nlm.nih.gov/gene/?term=RB250 RB2500 RB2500 RB2500 1306979 1307899 - UDP-glucose 4-epimerase PMID: 11337471 best DB hits: BLAST: gb:AAK04309.1%3B AE006259_3 (AE006259) UDP-glucose 4-epimerase%3B E%3D1e-23 swissprot:Q57664%3B GALE_METJA UDP-GLUCOSE 4-EPIMERASE%3B E%3D1e-23 gb:AAG18701.1%3B (AE004975) UDP-glucose 4-epimerase%3B GalE2%3B E%3D3e-23 COG: MJ0211%3B COG0451 Nucleoside-diphosphate-sugar epimerases%3B E%3D1e-24 MTH631%3B COG1087 UDP-glucose 4-epimerase%3B E%3D5e-20 PH0378%3B COG0451 Nucleoside-diphosphate-sugar epimerases%3B E%3D1e-19 PFAM: PF01073%3B 3-beta hydroxysteroid dehydrogenase%3B E%3D0.64 PF00106%3B short chain dehydrogenase%3B E%3D0.0027 PF01370%3B NAD dependent epimerase/dehydratase%3B E%3D4.2e-20 gene gene1347 http://www.ncbi.nlm.nih.gov/gene/?term=RB2500 RB2501 RB2501 RB2501 1307948 1308874 - hypothetical protein gene gene1348 http://www.ncbi.nlm.nih.gov/gene/?term=RB2501 RB2502 RB2502 RB2502 1308884 1309522 - maltose O-acetyltransferase PMID: 9384377 best DB hits: BLAST: swissprot:P37515%3B MAA_BACSU PROBABLE MALTOSE O-ACETYLTRANSFERASE%3B E%3D6e-08 pir:E82411%3B hexapeptide-repeat containing-acetyltransferase VCA0836%3B E%3D2e-07 swissprot:Q58464%3B YA64_METJA HYPOTHETICAL PROTEIN MJ1064 -----%3B E%3D4e-07 COG: BS_yyaI%3B COG0110 Acetyltransferases (the isoleucine patch%3B E%3D5e-09 lacA%3B COG0110 Acetyltransferases (the isoleucine patch superfamily)%3B E%3D3e-04 BH3001%3B COG0110 Acetyltransferases (the isoleucine patch%3B E%3D4e-04 PFAM: PF00132%3B Bacterial transferase hexapeptide (f%3B E%3D0.29 gene gene1349 http://www.ncbi.nlm.nih.gov/gene/?term=RB2502 RB2503 RB2503 RB2503 1309509 1311056 - flippase PMID: 10222209 best DB hits: BLAST: ddbj:BAA77727.1%3B (AB008676) flippase [Escherichia coli]%3B E%3D3e-05 gb:AAG57097.1%3B AE005429_8 (AE005429) O antigen flippase Wzx%3B E%3D3e-05 embl:CAA64437.1%3B (X94981) aceE [Acetobacter xylinus]%3B E%3D0.17 gene gene1350 http://www.ncbi.nlm.nih.gov/gene/?term=RB2503 RB2505 RB2505 RB2505 1311059 1311307 + hypothetical protein gene gene1351 http://www.ncbi.nlm.nih.gov/gene/?term=RB2505 RB2506 RB2506 RB2506 1311349 1311822 + hypothetical protein gene gene1352 http://www.ncbi.nlm.nih.gov/gene/?term=RB2506 RB2507 RB2507 rfbB rfbB 1311886 1313064 - dTDP-glucose-4%2C6-dehydratase PMID: 8022265 best DB hits: BLAST: gb:AAG35060.1%3B AF314183_2 (AF314183) dTDP-glucose-4%2C6-dehydratase%3B E%3D1e-110 gb:AAF33465.1%3B (AF233324) 89%25 identity with E. coli%3B E%3D1e-107 swissprot:P55294%3B RFBB_NEIMB DTDP-GLUCOSE 4%2C6-DEHYDRATASE -----%3B E%3D1e-106 COG: NMB0063%3B COG1088 dTDP-D-glucose 4%2C6-dehydratase%3B E%3D1e-107 PFAM: PF01073%3B 3-beta hydroxysteroid dehydro%3B E%3D0.53 PF00106%3B short chain dehydrogenase%3B E%3D0.073 PF01370%3B NAD dependent epimerase/dehyd%3B E%3D6e-141 gene gene1353 http://www.ncbi.nlm.nih.gov/gene/?term=RB2507 RB2508 RB2508 RB2508 1313113 1313220 + hypothetical protein gene gene1354 http://www.ncbi.nlm.nih.gov/gene/?term=RB2508 RB2509 RB2509 RB2509 1313237 1313377 + hypothetical protein gene gene1355 http://www.ncbi.nlm.nih.gov/gene/?term=RB2509 RB251 RB251 hisS hisS 128316 129644 - histidyl-tRNA synthetase PMID: 2991272 best DB hits: BLAST: swissprot:P56455%3B SYH_HELPY HISTIDYL-TRNA SYNTHETASE%3B E%3D5e-81 swissprot:Q9ZK27%3B SYH_HELPJ HISTIDYL-TRNA SYNTHETASE%3B E%3D1e-79 swissprot:O83647%3B SYH_TREPA HISTIDYL-TRNA SYNTHETASE%3B E%3D1e-73 COG: HP1190%3B COG0124 Histidyl-tRNA synthetase%3B E%3D5e-82 PFAM: PF00587%3B tRNA synthetase class II (G%2C H%2C%3B E%3D3.3e-08 gene gene137 http://www.ncbi.nlm.nih.gov/gene/?term=RB251 RB2510 RB2510 RB2510 1313396 1313563 + hypothetical protein gene gene1356 http://www.ncbi.nlm.nih.gov/gene/?term=RB2510 RB2511 RB2511 RB2511 1313530 1313667 + hypothetical protein gene gene1357 http://www.ncbi.nlm.nih.gov/gene/?term=RB2511 RB2512 RB2512 RB2512 1313675 1314652 - GDP-D-mannose dehydratase 1 PMID: 8905231 best DB hits: BLAST: gb:AAD10232.1%3B (U72147) GDP-D-mannose dehydratase%3B E%3D1e-88 pir:S74433%3B GDP-D-mannose dehydratase 1 - Synechocystis sp. (strain%3B E%3D6e-86 gb:AAD44219.1%3B AF143772_25 (AF143772) mdhtA [Mycobacterium avium]%3B E%3D5e-83 COG: sll1212%3B COG1089 GDP-D-mannose dehydratase%3B E%3D6e-87 DR0711%3B COG0451 Nucleoside-diphosphate-sugar epimerases%3B E%3D1e-17 Rv0112%3B COG1089 GDP-D-mannose dehydratase%3B E%3D2e-13 PFAM: PF01370%3B NAD dependent epimerase/dehydratase%3B E%3D3.5e-16 gene gene1358 http://www.ncbi.nlm.nih.gov/gene/?term=RB2512 RB2513 RB2513 RB2513 1314624 1314764 + hypothetical protein gene gene1359 http://www.ncbi.nlm.nih.gov/gene/?term=RB2513 RB2514 RB2514 RB2514 1314954 1315145 - hypothetical protein gene gene1360 http://www.ncbi.nlm.nih.gov/gene/?term=RB2514 RB2515 RB2515 RB2515 1315248 1316657 - UDP-glucose/GDP-mannose dehydrogenase PMID: 10984043 best DB hits: BLAST: pir:A83252%3B probable UDP-glucoseGDP-mannose dehydrogenase WbpA%3B E%3D1e-124 pir:H72358%3B lipopolysaccharide biosynthesis protein - Thermotoga%3B E%3D4e-93 pir:F71153%3B probable Vi polysaccharide biosynthesis protein -%3B E%3D8e-85 COG: PA3159%3B COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase%3B E%3D1e-125 VNG0046G%3B COG1004 Predicted UDP-glucose 6-dehydrogenase%3B E%3D9e-24 PFAM: PF00984%3B UDP-glucose/GDP-mannose dehydro%3B E%3D3.9e-131 gene gene1361 http://www.ncbi.nlm.nih.gov/gene/?term=RB2515 RB2516 RB2516 RB2516 1316669 1316860 + hypothetical protein gene gene1362 http://www.ncbi.nlm.nih.gov/gene/?term=RB2516 RB2517 RB2517 RB2517 1316854 1317012 + hypothetical protein gene gene1363 http://www.ncbi.nlm.nih.gov/gene/?term=RB2517 RB2518 RB2518 RB2518 1317007 1318059 - GDP-mannose 4%2C6 dehydratase PMID: 10718197 best DB hits: BLAST: gb:AAD10232.1%3B (U72147) GDP-D-mannose dehydratase%3B E%3D1e-112 pir:S74433%3B GDP-D-mannose dehydratase 1 - Synechocystis sp. (strain%3B E%3D1e-111 gb:AAD43839.1%3B AF076290_9 (AF076290) GDP-D-mannose%3B E%3D1e-102 COG: sll1212%3B COG1089 GDP-D-mannose dehydratase%3B E%3D1e-112 Cj1319%3B COG0451 Nucleoside-diphosphate-sugar epimerases%3B E%3D9e-14 Rv0112%3B COG1089 GDP-D-mannose dehydratase%3B E%3D1e-13 PFAM: PF01370%3B NAD dependent epimerase/dehydratase%3B E%3D1.3e-14 gene gene1364 http://www.ncbi.nlm.nih.gov/gene/?term=RB2518 RB2519 RB2519 RB2519 1318116 1318340 + hypothetical protein gene gene1365 http://www.ncbi.nlm.nih.gov/gene/?term=RB2519 RB252 RB252 RB252 129759 130250 - hypothetical protein gene gene138 http://www.ncbi.nlm.nih.gov/gene/?term=RB252 RB2520 RB2520 RB2520 1318375 1318581 + hypothetical protein gene gene1366 http://www.ncbi.nlm.nih.gov/gene/?term=RB2520 RB2521 RB2521 RB2521 1318633 1319577 - GDP-fucose synthetase PMID: 9862812 best DB hits: BLAST: pdb:1BWS%3B A Chain A%2C Crystal Structure Of%3B E%3D8e-90 gb:AAG57112.1%3B AE005431_4 (AE005431) nucleotide%3B E%3D2e-89 pir:D55239%3B cpsB 5'-region hypothetical protein 2 - Escherichia coli%3B E%3D2e-89 COG: wcaG%3B COG0451 Nucleoside-diphosphate-sugar epimerases%3B E%3D2e-90 Cj1131c%3B COG1087 UDP-glucose 4-epimerase%3B E%3D2e-11 slr0583%3B COG0451 Nucleoside-diphosphate-sugar epimerases%3B E%3D3e-11 PFAM: PF01370%3B NAD dependent epimerase/dehydratase%3B E%3D0.071 gene gene1367 http://www.ncbi.nlm.nih.gov/gene/?term=RB2521 RB2524 RB2524 RB2524 1319449 1319796 + hypothetical protein gene gene1368 http://www.ncbi.nlm.nih.gov/gene/?term=RB2524 RB2525 RB2525 RB2525 1320054 1320284 - hypothetical protein best DB hits: BLAST: gb:AAB99952.1%3B (AF035443) wee1 homolog [Xenopus laevis]%3B E%3D0.31 gene gene1369 http://www.ncbi.nlm.nih.gov/gene/?term=RB2525 RB2529 RB2529 RB2529 1320541 1321128 + signal peptide gene gene1370 http://www.ncbi.nlm.nih.gov/gene/?term=RB2529 RB2530 RB2530 RB2530 1321125 1322540 + oxidoreductase best DB hits: BLAST: gb:AAG19823.1%3B (AE005067) Vng1537c [Halobacterium sp. NRC-1]%3B E%3D4e-27 pir:E75148%3B hypothetical protein PAB2116 - Pyrococcus abyssi (strain%3B E%3D9e-25 gb:AAG20566.1%3B (AE005127) Vng2502c [Halobacterium sp. NRC-1]%3B E%3D8e-24 COG: VNG1537C%3B COG1078 HD superfamily phosphohydrolases%3B E%3D4e-28 gene gene1371 http://www.ncbi.nlm.nih.gov/gene/?term=RB2530 RB2532 RB2532 nagB nagB 1322563 1323318 + glucosamine-6-phosphate isomerase PMID: 7683645 PMID: 3284790 best DB hits: BLAST: swissprot:O31458%3B YBFT_BACSU HYPOTHETICAL 27.3 KD PROTEIN IN%3B E%3D2e-55 ddbj:BAB04139.1%3B (AP001508) N-acetylglucosamine-6-phosphate%3B E%3D4e-54 swissprot:O35000%3B NAGB_BACSU GLUCOSAMINE-6-PHOSPHATE ISOMERASE%3B E%3D8e-53 COG: BS_ybfT%3B COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate%3B E%3D2e-56 PFAM: PF01182%3B Glucosamine-6-phosphate isome%3B E%3D7.9e-96 gene gene1372 http://www.ncbi.nlm.nih.gov/gene/?term=RB2532 RB2533 RB2533 RB2533 1323315 1324823 + hypothetical protein PMID: 8843436 best DB hits: BLAST: embl:CAB88464.1%3B (AL353815) integral membrane protein%3B E%3D2e-07 pir:S74882%3B hypothetical protein sll1151 - Synechocystis sp. (strain%3B E%3D3e-07 gb:AAB90453.1%3B (AE001050) conserved hypothetical protein%3B E%3D1e-04 COG: sll1151%3B COG1808 Uncharacterized ACR%3B E%3D3e-08 gene gene1373 http://www.ncbi.nlm.nih.gov/gene/?term=RB2533 RB2534 RB2534 RB2534 1324897 1325199 + hypothetical protein gene gene1374 http://www.ncbi.nlm.nih.gov/gene/?term=RB2534 RB2535 RB2535 RB2535 1325120 1326238 - ribose operon repressor PMID: 1304369 PMID: 11258796 best DB hits: BLAST: pir:E82497%3B ribose operon repressor VCA0132 [imported] - Vibrio%3B E%3D3e-40 gb:AAA62106.1%3B (L10328) rbs repressor [Escherichia coli]%3B E%3D7e-40 swissprot:P25551%3B RBSR_ECOLI RIBOSE OPERON REPRESSOR -----%3B E%3D9e-40 COG: VCA0132%3B COG1609 Transcriptional regulators%3B E%3D2e-41 PFAM: PF01047%3B MarR family%3B E%3D0.088 PF02796%3B Helix-turn-helix domain of re%3B E%3D0.72 PF00356%3B Bacterial regulatory proteins%3B E%3D2e-09 gene gene1375 http://www.ncbi.nlm.nih.gov/gene/?term=RB2535 RB2537 RB2537 RB2537 1325997 1326602 + hypothetical protein gene gene1376 http://www.ncbi.nlm.nih.gov/gene/?term=RB2537 RB2543 RB2543 RB2543 1326685 1328760 + 30S ribosomal protein S1 PMID: 10871362 best DB hits: BLAST: swissprot:Q9Z8M3%3B RS1_CHLPN 30S RIBOSOMAL PROTEIN S1 -----%3B E%3D1e-139 swissprot:O84100%3B RS1_CHLTR 30S RIBOSOMAL PROTEIN S1 -----%3B E%3D1e-138 pir:A81710%3B ribosomal protein S1 TC0373 [imported] - Chlamydia%3B E%3D1e-137 COG: CPn0315%3B COG0539 Ribosomal protein S1%3B E%3D1e-140 PFAM: PF00575%3B S1 RNA binding domain%3B E%3D0.0018 PF01479%3B S4 domain%3B E%3D0.83 PF00575%3B S1 RNA binding domain%3B E%3D1.4e-24 gene gene1377 http://www.ncbi.nlm.nih.gov/gene/?term=RB2543 RB2545 RB2545 RB2545 1328773 1328931 - hypothetical protein gene gene1378 http://www.ncbi.nlm.nih.gov/gene/?term=RB2545 RB2547 RB2547 RB2547 1328986 1330332 + signal peptide PMID: 11214968 best DB hits: BLAST: gb:AAG20070.1%3B (AE005086) Vng1869c [Halobacterium sp. NRC-1]%3B E%3D0.18 gene gene1379 http://www.ncbi.nlm.nih.gov/gene/?term=RB2547 RB2549 RB2549 phyB phyB 1330329 1332260 + phytochrome B PMID: 11759840 best DB hits: BLAST: swissprot:Q9R6X3%3B PHYB_ANASP CYANOBACTERIAL PHYTOCHROME B -----%3B E%3D3e-32 gb:AAB89763.1%3B (AE001000) signal-transducing histidine kinase%3B E%3D4e-32 pir:E75617%3B sensor histidine kinase - Deinococcus radiodurans%3B E%3D6e-30 COG: DRA0205%3B COG0642 Sensory transduction histidine kinases%3B E%3D6e-31 PFAM: PF00672%3B HAMP domain%3B E%3D0.0036 PF00512%3B His Kinase A (phosphoacceptor) doma%3B E%3D7.2e-08 PF02518%3B Histidine kinase-%2C DNA gyrase B-%2C p%3B E%3D2e-35 gene gene1380 http://www.ncbi.nlm.nih.gov/gene/?term=RB2549 RB2550 RB2550 RB2550 1332257 1332721 + response regulator PMID: 9278513 best DB hits: BLAST: pir:B69158%3B sensory transduction regulatory protein -%3B E%3D8e-11 swissprot:Q55169%3B RCP1_SYNY3 RESPONSE REGULATOR RCP1 -----%3B E%3D1e-09 gb:AAB89775.1%3B (AE001001) response regulator [Archaeoglobus%3B E%3D2e-08 COG: MTH445%3B COG0784 CheY-like receiver domains%3B E%3D8e-12 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D8.1e-11 gene gene1381 http://www.ncbi.nlm.nih.gov/gene/?term=RB2550 RB2551 RB2551 RB2551 1332734 1332889 + hypothetical protein gene gene1382 http://www.ncbi.nlm.nih.gov/gene/?term=RB2551 RB2552 RB2552 argC argC 1332924 1333964 + N-acetyl-gamma-glutamyl-phosphate reductase PMID: 10360571 best DB hits: BLAST: swissprot:Q9Z4S2%3B ARGC_THENE N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE%3B E%3D4e-69 swissprot:Q9X2A2%3B ARGC_THEMA N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE%3B E%3D5e-69 pir:E83562%3B N-acetyl-gamma-glutamyl-phosphate reductase PA0662%3B E%3D1e-67 COG: TM1782%3B COG0002 Acetylglutamate semialdehyde dehydrogenase%3B E%3D4e-70 PFAM: PF01408%3B Oxidoreductase%2C NAD-bi%3B E%3D0.016 PF01118%3B Semialdehyde dehydrogenase%2C N%3B E%3D8.3e-31 PF02774%3B Semialdehyde dehydrogenase%2C d%3B E%3D2.8e-27 gene gene1383 http://www.ncbi.nlm.nih.gov/gene/?term=RB2552 RB2553 RB2553 RB2553 1334003 1335400 + phosphatase best DB hits: BLAST: pir:T36892%3B hypothetical protein SCI51.29 - Streptomyces coelicolor%3B E%3D6e-28 pir:G72244%3B hypothetical protein - Thermotoga maritima (strain MSB8)%3B E%3D3e-15 embl:CAC12021.1%3B (AL445065) conserved hypothetical protein%3B E%3D1e-07 gene gene1384 http://www.ncbi.nlm.nih.gov/gene/?term=RB2553 RB2556 RB2556 RB2556 1335438 1335620 - hypothetical protein gene gene1385 http://www.ncbi.nlm.nih.gov/gene/?term=RB2556 RB2557 RB2557 RB2557 1335672 1335857 + hypothetical protein gene gene1386 http://www.ncbi.nlm.nih.gov/gene/?term=RB2557 RB2558 RB2558 RB2558 1335881 1336927 + integrase PMID: 9023666 best DB hits: BLAST: swissprot:P55632%3B Y4QK_RHISN INTEGRASERECOMBINASE Y4QK%3B E%3D3e-39 swissprot:P55429%3B Y4EF_RHISN INTEGRASERECOMBINASE Y4EF%3B E%3D1e-32 prf:2115270D%3B integrase [Weeksella zoohelcum]%3B E%3D6e-23 COG: PAB0255%3B COG0582 Integrase%3B E%3D1e-20 PFAM: PF02899%3B Phage integrase%2C N-terminal S%3B E%3D0.3 PF00589%3B Phage integrase%3B E%3D8e-31 gene gene1387 http://www.ncbi.nlm.nih.gov/gene/?term=RB2558 RB2559 RB2559 RB2559 1336942 1338090 + transposase PMID: 1646375 best DB hits: BLAST: prf:2115270C%3B transposase [Weeksella zoohelcum]%3B E%3D1e-33 swissprot:P55631%3B Y4QJ_RHISN TRANSPOSASE Y4QJ -----%3B E%3D1e-32 swissprot:P24607%3B T801_PSESH TRANSPOSASE FOR INSERTION SEQUENCE%3B E%3D2e-09 PFAM: PF01096%3B Transcription factor S-II (TFIIS)%3B E%3D0.19 gene gene1388 http://www.ncbi.nlm.nih.gov/gene/?term=RB2559 RB256 RB256 purU purU 130316 131215 + formyltetrahydrofolate deformylase PMID: 7868604 best DB hits: BLAST: gb:AAG20130.1%3B (AE005091) formyltetrahydrofolate deformylase%3B E%3D5e-24 swissprot:Q55135%3B PURU_SYNY3 FORMYLTETRAHYDROFOLATE DEFORMYLASE%3B E%3D3e-17 pir:C82633%3B formyltetrahydrofolate deformylase XF1831 [imported] -%3B E%3D2e-15 COG: VNG1946G%3B COG0788 Formyltetrahydrofolate hydrolase%3B E%3D5e-25 TM1248%3B COG0299 Folate-dependent phosphoribosylglycinamide%3B E%3D2e-07 Rv2964%3B COG0788 Formyltetrahydrofolate hydrolase%3B E%3D8e-07 PFAM: PF00551%3B Formyl transferase%3B E%3D1.4e-10 gene gene139 http://www.ncbi.nlm.nih.gov/gene/?term=RB256 RB2560 RB2560 RB2560 1338094 1338390 + hypothetical protein gene gene1389 http://www.ncbi.nlm.nih.gov/gene/?term=RB2560 RB2562 RB2562 RB2562 1338453 1339220 - hypothetical protein gene gene1390 http://www.ncbi.nlm.nih.gov/gene/?term=RB2562 RB2566 RB2566 ldh ldh 1339217 1340152 - L-lactate dehydrogenase PMID: 3122782 PMID: 3118900 best DB hits: BLAST: swissprot:P00345%3B LDH_BACME L-LACTATE DEHYDROGENASE ----- pir:%3B E%3D3e-49 swissprot:P20619%3B LDHX_BACPS L-LACTATE DEHYDROGENASE X -----%3B E%3D6e-47 swissprot:P16115%3B LDH_THEMA L-LACTATE DEHYDROGENASE ----- pir:%3B E%3D3e-46 COG: TM1867%3B COG0039 Malate/lactate dehydrogenases%3B E%3D2e-47 PFAM: PF00056%3B lactate/malate dehydrogenase%2C NA%3B E%3D6.7e-46 PF02866%3B lactate/malate dehydrogenase%2C al%3B E%3D2.4e-36 gene gene1391 http://www.ncbi.nlm.nih.gov/gene/?term=RB2566 RB2568 RB2568 RB2568 1340281 1341144 - L-fuculose-phosphate aldolase best DB hits: BLAST: pir:C75206%3B L-fuculose-phosphate aldolase (EC 4.1.2.17) - Pyrococcus%3B E%3D3e-18 pir:E71241%3B L-fuculose-phosphate aldolase (EC 4.1.2.17) - Pyrococcus%3B E%3D5e-18 gb:AAK03448.1%3B (AE006174) unknown [Pasteurella multocida]%3B E%3D2e-16 COG: PAB0117%3B COG0235 Ribulose-5-phosphate 4-epimerase and related%3B E%3D2e-19 PFAM: PF00596%3B Class II Aldolase and Adducin N-t%3B E%3D2.4e-21 gene gene1392 http://www.ncbi.nlm.nih.gov/gene/?term=RB2568 RB257 RB257 RB257 131592 131813 - hypothetical protein gene gene140 http://www.ncbi.nlm.nih.gov/gene/?term=RB257 RB2571 RB2571 RB2571 1341231 1341536 - carbon dioxide concentrating mechanism protein CcmL PMID: 8491708 best DB hits: BLAST: swissprot:Q03512%3B CCML_SYNP7 CARBON DIOXIDE CONCENTRATING%3B E%3D1e-04 swissprot:P41792%3B EUTN_SALTY ETHANOLAMINE UTILIZATION PROTEIN%3B E%3D8e-04 swissprot:P77633%3B EUTN_ECOLI ETHANOLAMINE UTILIZATION PROTEIN%3B E%3D0.007 gene gene1393 http://www.ncbi.nlm.nih.gov/gene/?term=RB2571 RB2574 RB2574 RB2574 1341533 1342282 - hypothetical protein gene gene1394 http://www.ncbi.nlm.nih.gov/gene/?term=RB2574 RB2577 RB2577 RB2577 1342305 1342592 - ethanolamine utilization protein EutN PMID: 11206551 best DB hits: BLAST: swissprot:P77633%3B EUTN_ECOLI ETHANOLAMINE UTILIZATION PROTEIN%3B E%3D0.005 gb:AAG57565.1%3B AE005474_13 (AE005474) detox protein [Escherichia%3B E%3D0.005 swissprot:P41792%3B EUTN_SALTY ETHANOLAMINE UTILIZATION PROTEIN%3B E%3D0.008 gene gene1395 http://www.ncbi.nlm.nih.gov/gene/?term=RB2577 RB2579 RB2579 eutE eutE 1342595 1344019 - ethanolamine utilization protein EutE PMID: 11677609 best DB hits: BLAST: swissprot:P41793%3B EUTE_SALTY ETHANOLAMINE UTILIZATION PROTEIN EUTE%3B E%3D5e-84 gb:AAG57564.1%3B AE005474_12 (AE005474) ethanolamine utilization%3B E%3D1e-83 swissprot:P77445%3B EUTE_ECOLI ETHANOLAMINE UTILIZATION PROTEIN EUTE%3B E%3D5e-83 COG: eutE%3B COG1012 NAD-dependent aldehyde dehydrogenases%3B E%3D5e-84 PFAM: PF00171%3B Aldehyde dehydrogenase%3B E%3D0.21 gene gene1396 http://www.ncbi.nlm.nih.gov/gene/?term=RB2579 RB2581 RB2581 eutN eutN 1344073 1344465 - ethanolamine utilization protein EutN PMID: 11677609 best DB hits: BLAST: swissprot:P41792%3B EUTN_SALTY ETHANOLAMINE UTILIZATION PROTEIN EUTN%3B E%3D4e-09 swissprot:P77633%3B EUTN_ECOLI ETHANOLAMINE UTILIZATION PROTEIN EUTN%3B E%3D5e-09 gb:AAD39013.1%3B (AF026270) PduN [Salmonella enterica serovar%3B E%3D5e-09 gene gene1397 http://www.ncbi.nlm.nih.gov/gene/?term=RB2581 RB2582 RB2582 ackA ackA 1344446 1345681 - acetate kinase PMID: 8226682 PMID: 8702268 best DB hits: BLAST: ddbj:BAB06911.1%3B (AP001518) acetate kinase [Bacillus halodurans]%3B E%3D4e-75 swissprot:P37877%3B ACKA_BACSU ACETATE KINASE (ACETOKINASE) -----%3B E%3D2e-74 swissprot:P71104%3B ACKA_CLOAB ACETATE KINASE (ACETOKINASE) -----%3B E%3D6e-70 COG: BH3192%3B COG0282 Acetate kinase%3B E%3D3e-76 PFAM: PF00871%3B Acetokinase%3B E%3D2.5e-119 gene gene1398 http://www.ncbi.nlm.nih.gov/gene/?term=RB2582 RB2585 RB2585 RB2585 1345766 1346035 - hypothetical protein best DB hits: PFAM: PF00936%3B Bacterial microcompartments pr%3B E%3D1.2e-26 gene gene1399 http://www.ncbi.nlm.nih.gov/gene/?term=RB2585 RB2586 RB2586 eutM eutM 1346106 1346402 - ethanolamine utilization protein EutM PMID: 7868611 best DB hits: BLAST: swissprot:P37448%3B PDUA_SALTY PROPANEDIOL UTILIZATION PROTEIN%3B E%3D2e-11 gb:AAD39009.1%3B (AF026270) PduJ [Salmonella enterica serovar%3B E%3D2e-11 gb:AAB84107.2%3B (AF026270) PduA [Salmonella enterica serovar%3B E%3D2e-11 PFAM: PF00936%3B Bacterial microcompartments pr%3B E%3D1.2e-43 gene gene1400 http://www.ncbi.nlm.nih.gov/gene/?term=RB2586 RB2587 RB2587 RB2587 1346386 1346535 - hypothetical protein gene gene1401 http://www.ncbi.nlm.nih.gov/gene/?term=RB2587 RB2588 RB2588 RB2588 1346519 1347244 - transcriptional regulator PMID: 10360571 best DB hits: BLAST: pir:E72385%3B hypothetical protein TM0375 - Thermotoga maritima%3B E%3D7e-42 gb:AAD39011.1%3B (AF026270) PduL [Salmonella enterica serovar%3B E%3D3e-32 gene gene1402 http://www.ncbi.nlm.nih.gov/gene/?term=RB2588 RB259 RB259 RB259 131782 132336 - hypothetical protein gene gene141 http://www.ncbi.nlm.nih.gov/gene/?term=RB259 RB2590 RB2590 RB2590 1347241 1348146 - aga operon transcriptional repressor PMID: 10931310 best DB hits: BLAST: embl:CAB96011.1%3B (AL360055) transcriptional regulatory%3B E%3D3e-28 embl:CAC21630.1%3B (AL512667) deoR-family transcriptional%3B E%3D6e-25 ddbj:BAB05272.1%3B (AP001512) transcriptional regulator (DeoR%3B E%3D1e-24 COG: BH1553%3B COG1349 Transcriptional regulators of sugar metabolism%3B E%3D1e-25 PFAM: PF00392%3B Bacterial regulatory proteins%2C gnt%3B E%3D0.00039 PF01022%3B Bacterial regulatory protein%2C arsR%3B E%3D0.028 PF00455%3B Bacterial regulatory proteins%2C deo%3B E%3D2.1e-68 gene gene1403 http://www.ncbi.nlm.nih.gov/gene/?term=RB2590 RB2591 RB2591 RB2591 1348112 1348249 - hypothetical protein gene gene1404 http://www.ncbi.nlm.nih.gov/gene/?term=RB2591 RB2592 RB2592 RB2592 1348333 1348926 - hypothetical protein gene gene1405 http://www.ncbi.nlm.nih.gov/gene/?term=RB2592 RB2593 RB2593 RB2593 1349011 1350099 + hypothetical protein PMID: 20196006 best DB hits: BLAST: swissprot:P29939%3B YCB6_PSEDE HYPOTHETICAL 15.0 KD PROTEIN IN COBO%3B E%3D0.55 PFAM: PF00892%3B Integral membrane protein DUF6%3B E%3D7.1e-05 gene gene1406 http://www.ncbi.nlm.nih.gov/gene/?term=RB2593 RB2596 RB2596 RB2596 1350137 1353130 + ADP-ribosylation factor-directed GTPase activating protein isoform b best DB hits: BLAST: gb:AAC98350.1%3B (AF075462) ADP-ribosylation factor-directed GTPase%3B E%3D0.22 gb:AAF55676.2%3B (AE003726) CG7240 gene product [Drosophila%3B E%3D0.39 gene gene1407 http://www.ncbi.nlm.nih.gov/gene/?term=RB2596 RB2602 RB2602 RB2602 1353165 1353377 + hypothetical protein gene gene1408 http://www.ncbi.nlm.nih.gov/gene/?term=RB2602 RB2603 RB2603 RB2603 1353170 1353277 - hypothetical protein gene gene1409 http://www.ncbi.nlm.nih.gov/gene/?term=RB2603 RB2604 RB2604 RB2604 1353293 1353445 - hypothetical protein gene gene1410 http://www.ncbi.nlm.nih.gov/gene/?term=RB2604 RB2605 RB2605 RB2605 1353544 1358364 - azurin precursor PMID: 2116366 best DB hits: BLAST: pdb:2AZA%3B A Chain A%2C Azurin (Oxidized) ----- pdb: 2AZA B Chain%3B E%3D0.012 swissprot:P34097%3B AZUR_PSEPU AZURIN ----- pir: A37338 azurin -%3B E%3D0.024 pdb:1NZR%3B A Chain A%2C Azurin Mutant With Trp 48 Replaced By Met%3B E%3D0.033 COG: PA4922%3B COG3241 Azurin%3B E%3D0.008 PFAM: PF00127%3B Copper binding proteins%2C plasto%3B E%3D5e-06 PF00034%3B Cytochrome c%3B E%3D0.0036 gene gene1411 http://www.ncbi.nlm.nih.gov/gene/?term=RB2605 RB2612 RB2612 RB2612 1358405 1358638 + hypothetical protein gene gene1412 http://www.ncbi.nlm.nih.gov/gene/?term=RB2612 RB2613 RB2613 RB2613 1358580 1360514 - sulfatase atsG PMID: 9634230 best DB hits: BLAST: pir:F70837%3B probable sulfatase (EC 3.1.6.-) atsG - Mycobacterium%3B E%3D3e-23 gb:AAG17207.1%3B AF217204_1 (AF217204) heparan sulfate sulfamidase%3B E%3D3e-17 gb:AAG41945.1%3B AF304053_1 (AF304053) heparan N-sulfatase [Mus%3B E%3D2e-16 COG: Rv0296c%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D3e-24 TM1703%3B COG1368 Phosphoglycerol transferase and related proteins%2C%3B E%3D4e-04 ydeN%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D6e-04 PFAM: PF00884%3B Sulfatase%3B E%3D9.8e-18 gene gene1413 http://www.ncbi.nlm.nih.gov/gene/?term=RB2613 RB2618 RB2618 RB2618 1360632 1360868 - hypothetical protein gene gene1414 http://www.ncbi.nlm.nih.gov/gene/?term=RB2618 RB2619 RB2619 RB2619 1360823 1361656 + deoxyribonuclease yabD PMID: 10747959 best DB hits: BLAST: swissprot:P37545%3B YABD_BACSU DEOXYRIBONUCLEASE YABD%3B E%3D2e-45 pir:H72349%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D1e-37 ddbj:BAB03773.1%3B (AP001507) BH0054~~unknown conserved protein%3B E%3D6e-37 COG: BS_yabD%3B COG0084 Mg-dependent DNase%3B E%3D2e-46 PFAM: PF01026%3B TatD related DNase%3B E%3D1.8e-81 gene gene1415 http://www.ncbi.nlm.nih.gov/gene/?term=RB2619 RB262 RB262 RB262 132414 132683 + hypothetical protein gene gene142 http://www.ncbi.nlm.nih.gov/gene/?term=RB262 RB2620 RB2620 RB2620 1361729 1361956 + hypothetical protein gene gene1416 http://www.ncbi.nlm.nih.gov/gene/?term=RB2620 RB2621 RB2621 RB2621 1361887 1362576 + phosphate regulon response regulator PhoB PMID: 10629178 PMID: 3537313 PMID: 9878437 best DB hits: BLAST: gb:AAF15533.1%3B AF196490_3 (AF196490) phosphate regulon response%3B E%3D2e-35 swissprot:Q52990%3B PHOB_RHIME PHOSPHATE REGULON TRANSCRIPTIONAL%3B E%3D2e-31 embl:CAA11074.1%3B (AJ223073) phosphate regulatory protein%3B E%3D9e-31 COG: PA5360%3B COG0745 Response regulators consisting of a CheY-like%3B E%3D5e-31 phoB%3B COG0745 Response regulators consisting of a CheY-like receiver%3B E%3D7e-31 TM1655%3B COG0745 Response regulators consisting of a CheY-like%3B E%3D1e-30 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D2.5e-28 PF00486%3B Transcriptional regulatory prote%3B E%3D1.2e-24 gene gene1417 http://www.ncbi.nlm.nih.gov/gene/?term=RB2621 RB2623 RB2623 RB2623 1362584 1362730 - hypothetical protein gene gene1418 http://www.ncbi.nlm.nih.gov/gene/?term=RB2623 RB2624 RB2624 RB2624 1362723 1363412 + signal peptide gene gene1419 http://www.ncbi.nlm.nih.gov/gene/?term=RB2624 RB2626 RB2626 RB2626 1363440 1364447 - hypothetical protein PMID: 11214968 best DB hits: BLAST: pir:B72316%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D0.001 pir:T50902%3B Mg protoporphyrin IX monomethyl ester oxidative cyclase%3B E%3D0.011 embl:CAA70016.1%3B (Y08763) methyltransferase [Streptomyces%3B E%3D0.013 COG: TM0938%3B COG0500 SAM-dependent methyltransferases%3B E%3D1e-04 gene gene1420 http://www.ncbi.nlm.nih.gov/gene/?term=RB2626 RB2627 RB2627 RB2627 1364551 1365579 + glyceraldehyde 3-phosphate dehydrogenase PMID: 8557349 best DB hits: BLAST: swissprot:O06822%3B G3P_MYCTU GLYCERALDEHYDE 3-PHOSPHATE%3B E%3D2e-99 swissprot:P46795%3B G3P_BORBU GLYCERALDEHYDE 3-PHOSPHATE%3B E%3D2e-99 swissprot:P46713%3B G3P_MYCLE GLYCERALDEHYDE 3-PHOSPHATE%3B E%3D6e-99 COG: Rv1436%3B COG0057 Glyceraldehyde-3-phosphate%3B E%3D1e-101 PFAM: PF01408%3B Oxidoreductase%2C NAD-bindi%3B E%3D0.11 PF00044%3B Glyceraldehyde 3-phosphate dehyd%3B E%3D2.2e-118 PF02800%3B Glyceraldehyde 3-phosphate dehyd%3B E%3D5.5e-109 gene gene1421 http://www.ncbi.nlm.nih.gov/gene/?term=RB2627 RB2628 RB2628 RB2628 1365576 1365707 - hypothetical protein gene gene1422 http://www.ncbi.nlm.nih.gov/gene/?term=RB2628 RB2630 RB2630 obgE obgE 1365746 1366993 + GTPase ObgE essential GTPase%3B exhibits high exchange rate for GTP/GDP%3B associates with 50S ribosomal subunit%3B involved in regulation of chromosomal replication gene gene1423 http://www.ncbi.nlm.nih.gov/gene/?term=RB2630 RB2632 RB2632 RB2632 1367010 1367897 + hypothetical protein PMID: 7601846 best DB hits: BLAST: pir:T36391%3B hypothetical protein SCE94.31c - Streptomyces coelicolor%3B E%3D4e-11 pir:S75559%3B hypothetical protein slr0812 - Synechocystis sp. (strain%3B E%3D3e-10 gb:AAG28531.1%3B AF198621_2 (AF198621) 32 kDa replication%3B E%3D7e-10 COG: slr0812%3B COG1521 transcriptional regulators%2C homologs of%3B E%3D3e-11 TM0883%3B COG1521 transcriptional regulators%2C homologs of Bvg%3B E%3D7e-09 NMB2075_2%3B COG1521 transcriptional regulators%2C homologs of%3B E%3D6e-07 gene gene1424 http://www.ncbi.nlm.nih.gov/gene/?term=RB2632 RB2634 RB2634 RB2634 1367907 1368080 - hypothetical protein gene gene1425 http://www.ncbi.nlm.nih.gov/gene/?term=RB2634 RB2636 RB2636 RB2636 1368100 1368450 - hypothetical protein gene gene1426 http://www.ncbi.nlm.nih.gov/gene/?term=RB2636 RB2637 RB2637 rnhA rnhA 1368449 1369171 + ribonuclease HI PMID: 1650910 best DB hits: BLAST: pir:A83418%3B ribonuclease H PA1815 [imported] - Pseudomonas%3B E%3D1e-04 pdb:1RBR%3B Ribonuclease H (E.C.3.1.26.4) Mutant With His 62%3B E%3D2e-04 swissprot:P23329%3B RNH_SALTY RIBONUCLEASE HI (RNASE HI)%3B E%3D5e-04 COG: PA1815%3B COG0328 Ribonuclease HI%3B E%3D1e-05 gene gene1427 http://www.ncbi.nlm.nih.gov/gene/?term=RB2637 RB2638 RB2638 glgB glgB 1369232 1371442 + glycogen branching enzyme catalyzes the transfer of a segment of a 1%2C4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain gene gene1428 http://www.ncbi.nlm.nih.gov/gene/?term=RB2638 RB264 RB264 rpsU rpsU 132677 132871 + 30S ribosomal protein S21 PMID: 11679669 best DB hits: BLAST: swissprot:P49225%3B RS21_MYXXA 30S RIBOSOMAL PROTEIN S21 -----%3B E%3D0.78 PFAM: PF01165%3B Ribosomal protein S21%3B E%3D2.9e-10 gene gene143 http://www.ncbi.nlm.nih.gov/gene/?term=RB264 RB2640 RB2640 RB2640 1371720 1372769 - signal peptide gene gene1429 http://www.ncbi.nlm.nih.gov/gene/?term=RB2640 RB2642 RB2642 RB2642 1372782 1373147 - 7-cyano-7-deazaguanine reductase NADPH-dependent%3B catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis gene gene1430 http://www.ncbi.nlm.nih.gov/gene/?term=RB2642 RB2645 RB2645 RB2645 1373182 1373955 + 7-carboxy-7-deazaguanine synthase PMID: 11016950 best DB hits: BLAST: gb:AAG20939.1%3B (AE005160) Vng6305c [Halobacterium sp. NRC-1]%3B E%3D3e-42 embl:CAC23039.1%3B (AL512964) homolog of ORF_f223 [Escherichia%3B E%3D2e-16 pir:C82625%3B conserved hypothetical protein XF1894 [imported] -%3B E%3D1e-15 COG: XF1894%3B COG0602 Organic radical activating enzymes%3B E%3D1e-16 PAB2273%3B COG2896 Molybdenum cofactor biosynthesis enzyme%3B E%3D4e-05 MJ1645%3B COG0602 Organic radical activating enzymes%3B E%3D3e-04 PFAM: PF02143%3B Radical activating enzyme%3B E%3D1e-06 PF01444%3B moaA / nifB / pqqE family%3B E%3D0.0011 gene gene1431 http://www.ncbi.nlm.nih.gov/gene/?term=RB2645 RB2647 RB2647 RB2647 1374116 1374889 - signal peptide PMID: 12024217 gene gene1432 http://www.ncbi.nlm.nih.gov/gene/?term=RB2647 RB2649 RB2649 RB2649 1374987 1375148 + hypothetical protein gene gene1433 http://www.ncbi.nlm.nih.gov/gene/?term=RB2649 RB2651 RB2651 RB2651 1375141 1377528 - hypothetical protein PMID: 11759840 best DB hits: BLAST: pir:S77541%3B hypothetical protein slr1207 - Synechocystis sp. (strain%3B E%3D0.007 COG: slr1207%3B COG0845 Membrane-fusion protein%3B E%3D7e-04 PFAM: PF02163%3B Sterol-regulatory element bindi%3B E%3D0.79 PF00364%3B Biotin-requiring enzyme%3B E%3D0.046 gene gene1434 http://www.ncbi.nlm.nih.gov/gene/?term=RB2651 RB2654 RB2654 RB2654 1377489 1379618 - membrane spanning export protein PMID: 11206551 best DB hits: BLAST: gb:AAG54840.1%3B AE005229_3 (AE005229) membrane spanning%3B E%3D0.072 gb:AAG09745.1%3B AF232237_3 (AF232237) membrane fusion protein%3B E%3D0.23 pir:E70342%3B cation efflux system (czcB-like) - Aquifex aeolicus%3B E%3D0.43 PFAM: PF00364%3B Biotin-requiring enzyme%3B E%3D0.0014 PF00529%3B HlyD family secretion protein%3B E%3D2.9e-05 gene gene1435 http://www.ncbi.nlm.nih.gov/gene/?term=RB2654 RB2656 RB2656 RB2656 1379700 1380779 - oxidoreductase best DB hits: BLAST: pir:T35248%3B probable oxidoreductase - Streptomyces coelicolor%3B E%3D1e-40 gb:AAK01518.1%3B (AF241171) oxidoreductase [Pseudomonas%3B E%3D0.001 swissprot:P73069%3B Y48L_SYNY3 YCF48-LIKE PROTEIN ----- pir:%3B E%3D0.003 PFAM: PF02012%3B BNR repeat%3B E%3D0.039 gene gene1436 http://www.ncbi.nlm.nih.gov/gene/?term=RB2656 RB2658 RB2658 xylA xylA 1380946 1382265 - xylose isomerase catalyzes the interconversion of D-xylose to D-xylulose gene gene1437 http://www.ncbi.nlm.nih.gov/gene/?term=RB2658 RB2659 RB2659 RB2659 1382315 1382557 + hypothetical protein gene gene1438 http://www.ncbi.nlm.nih.gov/gene/?term=RB2659 RB2660 RB2660 RB2660 1382326 1382661 - hypothetical protein gene gene1439 http://www.ncbi.nlm.nih.gov/gene/?term=RB2660 RB2661 RB2661 murB murB 1382713 1383747 + UDP-N-acetylenolpyruvoylglucosamine reductase PMID: 1387377 PMID: 2556375 PMID: 2556376 PMID: 7590298 best DB hits: BLAST: gb:AAK05260.1%3B AE006348_5 (AE006348)%3B E%3D3e-22 swissprot:P18579%3B MURB_BACSU UDP-N-ACETYLENOLPYRUVOYLGLUCOSAMINE%3B E%3D2e-19 ddbj:BAB06283.1%3B (AP001515) UDP-N-acetylenolpyruvoylglucosamine%3B E%3D6e-17 COG: BS_murB%3B COG0812 UDP-N-acetylmuramate dehydrogenase%3B E%3D2e-20 PFAM: PF02215%3B UDP-N-acetylenolpyruvoylglucos%3B E%3D1.5e-34 PF02873%3B UDP-N-acetylenolpyruvoylglucos%3B E%3D0.3 gene gene1440 http://www.ncbi.nlm.nih.gov/gene/?term=RB2661 RB2662 RB2662 RB2662 1383758 1384642 + signal peptide gene gene1441 http://www.ncbi.nlm.nih.gov/gene/?term=RB2662 RB2663 RB2663 RB2663 1384715 1386346 + heparan N-sulfatase PMID: 11181566 best DB hits: BLAST: gb:AAG41945.1%3B AF304053_1 (AF304053) heparan N-sulfatase [Mus%3B E%3D5e-36 gb:AAG41946.1%3B AF304054_1 (AF304054) mutant heparan N-sulfatase%3B E%3D2e-35 gb:AAF29467.1%3B (AF156255) N-sulfoglucosamine sulfohydrolase [Mus%3B E%3D1e-34 COG: Rv0296c%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D2e-27 VC2041%3B COG3083 Predicted hydrolase of alkaline phosphatase%3B E%3D0.003 aslA%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D0.005 PFAM: PF00884%3B Sulfatase%3B E%3D3.3e-16 PF01974%3B tRNA intron endonuclease%2C catal%3B E%3D0.44 PF00884%3B Sulfatase%3B E%3D8.6e-21 gene gene1442 http://www.ncbi.nlm.nih.gov/gene/?term=RB2663 RB2665 RB2665 RB2665 1386348 1386527 + hypothetical protein gene gene1443 http://www.ncbi.nlm.nih.gov/gene/?term=RB2665 RB2667 RB2667 RB2667 1386488 1387198 - hypothetical protein gene gene1444 http://www.ncbi.nlm.nih.gov/gene/?term=RB2667 RB2669 RB2669 RB2669 1387021 1387995 - hypothetical protein gene gene1445 http://www.ncbi.nlm.nih.gov/gene/?term=RB2669 RB2671 RB2671 RB2671 1388043 1389056 - hypothetical protein PMID: 7482699 best DB hits: BLAST: ddbj:BAA91718.1%3B (AK001486) unnamed protein product [Homo%3B E%3D0.007 ddbj:BAB08640.1%3B (AB009048) gene_id:K15E6.5~~unknown protein%3B E%3D0.012 pir:T00095%3B hypothetical protein KIAA0470 - human ----- ddbj:%3B E%3D0.052 PFAM: PF00498%3B FHA domain%3B E%3D1.8e-12 gene gene1446 http://www.ncbi.nlm.nih.gov/gene/?term=RB2671 RB2673 RB2673 RB2673 1389086 1390600 - serine/threonine protein kinase PMID: 1835671 best DB hits: BLAST: pir:H69878%3B probable protein kinase (EC 2.7.1.-) yloP - Bacillus%3B E%3D3e-43 ddbj:BAB06223.1%3B (AP001515) serinethreonine protein kinase%3B E%3D7e-43 swissprot:P71584%3B PKNB_MYCTU SERINETHREONINE-PROTEIN%3B E%3D5e-41 COG: BS_yloP_1%3B COG0515 Serine/threonine protein kinases%3B E%3D3e-44 PFAM: PF00069%3B Protein kinase domain%3B E%3D6e-61 gene gene1447 http://www.ncbi.nlm.nih.gov/gene/?term=RB2673 RB2675 RB2675 RB2675 1390637 1390762 - hypothetical protein gene gene1448 http://www.ncbi.nlm.nih.gov/gene/?term=RB2675 RB2676 RB2676 truA truA 1390759 1391589 - tRNA pseudouridine synthase A PMID: 10192928 PMID: 3276686 best DB hits: BLAST: swissprot:Q9Z9J0%3B TRUA_BACHD TRNA PSEUDOURIDINE SYNTHASE A%3B E%3D6e-39 gb:AAK04584.1%3B AE006284_2 (AE006284) tRNA pseudouridine synthase A%3B E%3D5e-38 swissprot:O84469%3B TRUA_CHLTR TRNA PSEUDOURIDINE SYNTHASE A%3B E%3D1e-37 COG: BH0167%3B COG0101 Pseudouridylate synthase (tRNA psi55)%3B E%3D6e-40 PFAM: PF01416%3B tRNA pseudouridine synthase%3B E%3D5.6e-49 gene gene1449 http://www.ncbi.nlm.nih.gov/gene/?term=RB2676 RB2679 RB2679 RB2679 1391557 1392078 + hypothetical protein best DB hits: PFAM: PF01982%3B Domain of unknown function DUF120%3B E%3D0.28 gene gene1450 http://www.ncbi.nlm.nih.gov/gene/?term=RB2679 RB268 RB268 RB268 133252 133707 - hypothetical protein best DB hits: BLAST: pir:H75286%3B hypothetical protein - Deinococcus radiodurans (strain%3B E%3D5e-11 COG: DR2326%3B COG2314 Predicted membrane protein%3B E%3D1e-11 gene gene145 http://www.ncbi.nlm.nih.gov/gene/?term=RB268 RB2680 RB2680 RB2680 1392163 1393566 - suppressor for copper-sensitivity C PMID: 11953415 best DB hits: BLAST: gb:AAC45602.1%3B (U75949) suppressor for copper-sensitivity C%3B E%3D0.011 pir:S75747%3B hypothetical protein slr0565 - Synechocystis sp.%3B E%3D0.032 ddbj:BAA20493.1%3B (AB004696) 27kDa outer membrane protein%3B E%3D0.11 gene gene1451 http://www.ncbi.nlm.nih.gov/gene/?term=RB2680 RB2682 RB2682 RB2682 1393530 1393781 - hypothetical protein gene gene1452 http://www.ncbi.nlm.nih.gov/gene/?term=RB2682 RB2683 RB2683 RB2683 1393591 1393797 + hypothetical protein gene gene1453 http://www.ncbi.nlm.nih.gov/gene/?term=RB2683 RB2684 RB2684 araC araC 1393950 1394714 - transcriptional regulator PMID: 3902795 best DB hits: BLAST: pir:C83489%3B probable transcriptional regulator PA1261 [imported] -%3B E%3D2e-26 pir:D69749%3B transcriptional regulator AraCXylS family homolog ybfI -%3B E%3D2e-11 pir:F82380%3B transcriptional regulator AraCXylS family VCA1074%3B E%3D4e-11 COG: PA1261%3B COG2207 AraC-type DNA-binding domain-containing proteins%3B E%3D2e-27 BS_adaA%3B COG2169 Adenosine deaminase%3B E%3D3e-10 BH3842_2%3B COG2207 AraC-type DNA-binding domain-containing proteins%3B E%3D6e-10 PFAM: PF00165%3B Bacterial regulatory helix-turn-heli%3B E%3D5.4e-23 gene gene1454 http://www.ncbi.nlm.nih.gov/gene/?term=RB2684 RB2686 RB2686 RB2686 1394692 1394952 + hypothetical protein gene gene1455 http://www.ncbi.nlm.nih.gov/gene/?term=RB2686 RB2688 RB2688 RB2688 1394945 1398250 + hypothetical protein gene gene1456 http://www.ncbi.nlm.nih.gov/gene/?term=RB2688 RB269 RB269 RB269 133878 134096 - hypothetical protein gene gene146 http://www.ncbi.nlm.nih.gov/gene/?term=RB269 RB2690 RB2690 RB2690 1398243 1399763 + hypothetical protein gene gene1457 http://www.ncbi.nlm.nih.gov/gene/?term=RB2690 RB2693 RB2693 RB2693 1399779 1402748 + hypothetical protein gene gene1458 http://www.ncbi.nlm.nih.gov/gene/?term=RB2693 RB2697 RB2697 RB2697 1402745 1404271 + sulfatase gene gene1459 http://www.ncbi.nlm.nih.gov/gene/?term=RB2697 RB27 RB27 RB27 14053 14556 + hypothetical protein gene gene13 http://www.ncbi.nlm.nih.gov/gene/?term=RB27 RB2700 RB2700 RB2700 1404253 1404417 - hypothetical protein gene gene1460 http://www.ncbi.nlm.nih.gov/gene/?term=RB2700 RB2701 RB2701 RB2701 1404427 1406121 - N-acetylgalactosamine 6-sulfate sulfatase PMID: 8020961 best DB hits: BLAST: ddbj:BAA04535.1%3B (D17629) N-acetylgalactosamine 6-sulfate%3B E%3D3e-25 gb:AAF63858.1%3B (AF112242) N-acetylgalactosamine-6-sulfate%3B E%3D7e-23 gb:AAG58881.1%3B AE005599_13 (AE005599) sulfatase%3B E%3D1e-22 COG: yidJ%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D4e-23 PA0924%3B COG3083 Predicted hydrolase of alkaline phosphatase%3B E%3D3e-04 PFAM: PF00884%3B Sulfatase%3B E%3D2.5e-44 gene gene1461 http://www.ncbi.nlm.nih.gov/gene/?term=RB2701 RB2702 RB2702 RB2702 1406189 1407112 + kappa-carrageenase [precursor] PMID: 8112578 best DB hits: BLAST: swissprot:P43478%3B CGKA_ALTCA KAPPA-CARRAGEENASE PRECURSOR -----%3B E%3D1e-61 gb:AAC27890.1%3B (AF007559) kappa-carrageenase precursor [Zobellia%3B E%3D3e-56 pir:T18265%3B endo-1%2C3(4)-beta-glucanase (EC 3.2.1.6) - Clostridium%3B E%3D8e-07 COG: TM0024%3B COG2273 Beta-glucanase/Beta-glucan synthetase%3B E%3D1e-05 PFAM: PF00722%3B Glycosyl hydrolases family 16%3B E%3D4.5e-07 gene gene1462 http://www.ncbi.nlm.nih.gov/gene/?term=RB2702 RB2704 RB2704 RB2704 1407229 1407564 + hypothetical protein gene gene1463 http://www.ncbi.nlm.nih.gov/gene/?term=RB2704 RB2705 RB2705 RB2705 1407665 1408162 + hypothetical protein gene gene1464 http://www.ncbi.nlm.nih.gov/gene/?term=RB2705 RB2706 RB2706 RB2706 1408155 1408655 + hypothetical protein gene gene1465 http://www.ncbi.nlm.nih.gov/gene/?term=RB2706 RB2707 RB2707 RB2707 1408843 1410375 - iduronate-2-sulfatase PMID: 8244397 best DB hits: BLAST: gb:AAA16877.1%3B (L13329) iduronate-2-sulfatase [Homo sapiens]%3B E%3D6e-52 gb:AAB33747.1%3B iduronate-2-sulfatase%2C IDS {EC 3.1.6.13} [human%2C%3B E%3D3e-51 gb:AAF47771.1%3B (AE003478) CG12014 gene product [Drosophila%3B E%3D7e-49 COG: PA0031%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D1e-33 PFAM: PF00884%3B Sulfatase%3B E%3D8.6e-28 gene gene1466 http://www.ncbi.nlm.nih.gov/gene/?term=RB2707 RB2708 RB2708 RB2708 1410335 1410514 + hypothetical protein gene gene1467 http://www.ncbi.nlm.nih.gov/gene/?term=RB2708 RB271 RB271 RB271 134068 134205 - hypothetical protein gene gene147 http://www.ncbi.nlm.nih.gov/gene/?term=RB271 RB2710 RB2710 RB2710 1410525 1411547 - glpG protein PMID: 11206551 best DB hits: BLAST: gb:AAG58528.1%3B AE005565_3 (AE005565) protein of glp regulon%3B E%3D2e-08 swissprot:P54493%3B YQGP_BACSU HYPOTHETICAL 56.4 KD PROTEIN IN%3B E%3D1e-07 pir:A82363%3B glpG protein VC0099 [imported] - Vibrio cholerae (group%3B E%3D9e-07 COG: VC0099%3B COG0705 Uncharacterized membrane protein (homolog of%3B E%3D9e-08 PFAM: PF01694%3B Rhomboid family%3B E%3D3.4e-26 gene gene1468 http://www.ncbi.nlm.nih.gov/gene/?term=RB2710 RB2711 RB2711 RB2711 1411526 1414822 + hypothetical protein best DB hits: PFAM: PF00034%3B Cytochrome c%3B E%3D8.2e-05 gene gene1469 http://www.ncbi.nlm.nih.gov/gene/?term=RB2711 RB2714 RB2714 RB2714 1414909 1415817 - hypothetical protein PMID: 12024217 best DB hits: BLAST: pir:S62202%3B hypothetical protein 1 - Methanosarcina barkeri -----%3B E%3D0.003 pir:H82720%3B outer membrane protein XF1123 [imported] - Xylella%3B E%3D0.008 swissprot:Q57099%3B PP26_BRUME 26 KDA PERIPLASMIC IMMUNOGENIC%3B E%3D0.093 COG: XF1123%3B COG2968 Uncharacterized BCR%3B E%3D8e-04 gene gene1470 http://www.ncbi.nlm.nih.gov/gene/?term=RB2714 RB2717 RB2717 RB2717 1415913 1416470 - dual specificity phosphatase MKP-5 PMID: 10391943 best DB hits: BLAST: gb:AAD15447.1%3B (AC006068) unknown protein [Arabidopsis thaliana]%3B E%3D8e-21 gb:AAF56179.1%3B (AE003744) CG10371 gene product [Drosophila%3B E%3D3e-17 ddbj:BAB09879.1%3B (AB013392) contains similarity to unknown%3B E%3D4e-16 COG: PH1732%3B COG2453 Predicted protein-tyrosine phosphatase%3B E%3D3e-10 PFAM: PF00782%3B Dual specificity phosphatase%2C cataly%3B E%3D1.3e-08 gene gene1471 http://www.ncbi.nlm.nih.gov/gene/?term=RB2717 RB2718 RB2718 dldH dldH 1416467 1417891 - dihydrolipoamide dehydrogenase PMID: 8487301 best DB hits: BLAST: swissprot:P14218%3B DLDH_PSEFL DIHYDROLIPOAMIDE DEHYDROGENASE (E3%3B E%3D1e-108 pdb:1LPF%3B A Chain A%2C Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4)%3B E%3D1e-108 pir:A45796%3B dihydrolipoamide dehydrogenase (EC 1.8.1.4) -%3B E%3D1e-108 COG: PA1587%3B COG1249 Dihydrolipoamide dehydrogenase/glutathione%3B E%3D1e-109 PFAM: PF00070%3B Pyridine nucleotide-disulphide%3B E%3D1.5e-94 PF02852%3B Pyridine nucleotide-disulphide%3B E%3D5.8e-55 gene gene1472 http://www.ncbi.nlm.nih.gov/gene/?term=RB2718 RB2719 RB2719 RB2719 1417897 1418148 + hypothetical protein gene gene1473 http://www.ncbi.nlm.nih.gov/gene/?term=RB2719 RB272 RB272 RB272 134180 134296 + hypothetical protein gene gene148 http://www.ncbi.nlm.nih.gov/gene/?term=RB272 RB2720 RB2720 RB2720 1418200 1418964 - signal peptide gene gene1474 http://www.ncbi.nlm.nih.gov/gene/?term=RB2720 RB2724 RB2724 RB2724 1419017 1419817 - hypothetical protein gene gene1475 http://www.ncbi.nlm.nih.gov/gene/?term=RB2724 RB2725 RB2725 lpxB lpxB 1419868 1421151 - lipid-A-disaccharide synthase PMID: 2824445 best DB hits: BLAST: swissprot:P10441%3B LPXB_ECOLI LIPID-A-DISACCHARIDE SYNTHASE -----%3B E%3D6e-31 pir:A82101%3B lipid-A-disaccharide synthase VC2247 [imported] - Vibrio%3B E%3D1e-30 pir:SYECLA%3B lipid-A-disaccharide synthase (EC 2.4.1.182) -%3B E%3D2e-30 COG: VC2247%3B COG0763 Lipid A disaccharide synthetase%3B E%3D1e-31 PFAM: PF02684%3B Lipid-A-disaccharide syntheta%3B E%3D1.3e-37 gene gene1476 http://www.ncbi.nlm.nih.gov/gene/?term=RB2725 RB2726 RB2726 RB2726 1421143 1421313 + hypothetical protein gene gene1477 http://www.ncbi.nlm.nih.gov/gene/?term=RB2726 RB2728 RB2728 RB2728 1421291 1423312 + two-component sensor histidine kinase FixL PMID: 8552028 best DB hits: BLAST: pir:D82244%3B sensory box sensor histidine kinase VC1084 [imported] -%3B E%3D4e-15 ddbj:BAB05639.1%3B (AP001513) two-component sensor histidine kinase%3B E%3D1e-13 pir:S60595%3B FixL protein - Rhizobium leguminosarum ----- gb:%3B E%3D3e-13 COG: VC1084%3B COG0642 Sensory transduction histidine kinases%3B E%3D3e-16 PFAM: PF00672%3B HAMP domain%3B E%3D2.9e-10 PF00512%3B His Kinase A (phosphoacceptor) doma%3B E%3D3.2e-08 PF02518%3B Histidine kinase-%2C DNA gyrase B-%2C p%3B E%3D7.9e-33 gene gene1478 http://www.ncbi.nlm.nih.gov/gene/?term=RB2728 RB273 RB273 RB273 134462 135280 - secreted glycosyl hydrolase best DB hits: BLAST: embl:CAB94634.1%3B (AL359215) secreted glycosyl hydrolase.%3B E%3D7e-08 pir:T34929%3B hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces%3B E%3D1e-07 embl:CAB45032.1%3B (AL078635) large multi-functional%3B E%3D0.002 gene gene149 http://www.ncbi.nlm.nih.gov/gene/?term=RB273 RB2731 RB2731 RB2731 1423176 1424672 + acetoacetate metabolism regulatory protein atoC PMID: 8346225 best DB hits: BLAST: swissprot:Q06065%3B ATOC_ECOLI ACETOACETATE METABOLISM REGULATORY%3B E%3D5e-83 gb:AAC28085.1%3B (AF100457) response regulator [Myxococcus xanthus]%3B E%3D2e-81 swissprot:Q00934%3B PILR_PSEAE TYPE 4 FIMBRIAE EXPRESSION REGULATORY%3B E%3D4e-79 COG: atoC%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D4e-84 VC2137%3B COG1221 NtrC family transcriptional regulators%2C ATPase%3B E%3D5e-67 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D4.1e-28 PF00158%3B Sigma-54 interaction domain%3B E%3D4.8e-131 gene gene1479 http://www.ncbi.nlm.nih.gov/gene/?term=RB2731 RB2732 RB2732 RB2732 1424676 1426343 + heparan N-sulfatase PMID: 11181566 best DB hits: BLAST: gb:AAG41945.1%3B AF304053_1 (AF304053) heparan N-sulfatase [Mus%3B E%3D9e-29 gb:AAF29467.1%3B (AF156255) N-sulfoglucosamine sulfohydrolase [Mus%3B E%3D2e-28 gb:AAG41946.1%3B AF304054_1 (AF304054) mutant heparan N-sulfatase%3B E%3D3e-28 COG: Rv0296c%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D9e-29 TM1703%3B COG1368 Phosphoglycerol transferase and related proteins%2C%3B E%3D2e-04 yejM%3B COG3083 Predicted hydrolase of alkaline phosphatase%3B E%3D0.001 PFAM: PF00884%3B Sulfatase%3B E%3D2.2e-23 gene gene1480 http://www.ncbi.nlm.nih.gov/gene/?term=RB2732 RB2735 RB2735 g6pD g6pD 1426595 1428049 - glucose-6-phosphate 1-dehydrogenase catalyzes the formation of D-glucono-1%2C5-lactone 6-phosphate from D-glucose 6-phosphate gene gene1481 http://www.ncbi.nlm.nih.gov/gene/?term=RB2735 RB2737 RB2737 RB2737 1428178 1429320 - hypothetical protein gene gene1482 http://www.ncbi.nlm.nih.gov/gene/?term=RB2737 RB2739 RB2739 RB2739 1429331 1429564 - hypothetical protein gene gene1483 http://www.ncbi.nlm.nih.gov/gene/?term=RB2739 RB2740 RB2740 RB2740 1429648 1430028 - DNA-dependent RNA polymerase beta subunit best DB hits: BLAST: gb:AAF60349.1%3B AF242549_1 (AF242549) DNA-dependent RNA polymerase%3B E%3D0.22 gene gene1484 http://www.ncbi.nlm.nih.gov/gene/?term=RB2740 RB2741 RB2741 RB2741 1429994 1430170 - hypothetical protein gene gene1485 http://www.ncbi.nlm.nih.gov/gene/?term=RB2741 RB2743 RB2743 RB2743 1430412 1431044 + nitrate/nitrite regulatory protein narP PMID: 8501030 best DB hits: BLAST: embl:CAA75536.1%3B (Y15252) nitratenitrite regulatory protein%3B E%3D3e-25 embl:CAB59507.1%3B (AL132648) two-component response%3B E%3D4e-25 pir:F83160%3B two-component response regulator NarL PA3879 [imported]%3B E%3D4e-25 COG: PA3879%3B COG2197 Response regulators consisting of a CheY-like%3B E%3D4e-26 narP%3B COG2197 Response regulators consisting of a CheY-like receiver%3B E%3D9e-23 DR0891%3B COG2197 Response regulators consisting of a CheY-like%3B E%3D1e-22 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D7.4e-26 PF00325%3B Bacterial regulatory proteins%2C c%3B E%3D0.038 PF01381%3B Helix-turn-helix%3B E%3D0.45 gene gene1486 http://www.ncbi.nlm.nih.gov/gene/?term=RB2743 RB2744 RB2744 RB2744 1431060 1431278 + hypothetical protein gene gene1487 http://www.ncbi.nlm.nih.gov/gene/?term=RB2744 RB2745 RB2745 RB2745 1431275 1431400 + hypothetical protein gene gene1488 http://www.ncbi.nlm.nih.gov/gene/?term=RB2745 RB2746 RB2746 dapA dapA 1431502 1432446 + 4-hydroxy-tetrahydrodipicolinate synthase PMID: 8098035 best DB hits: BLAST: swissprot:Q57695%3B DAPA_METJA DIHYDRODIPICOLINATE SYNTHASE (DHDPS)%3B E%3D5e-68 swissprot:O67216%3B DAPA_AQUAE DIHYDRODIPICOLINATE SYNTHASE (DHDPS)%3B E%3D5e-66 swissprot:Q04796%3B DAPA_BACSU DIHYDRODIPICOLINATE SYNTHASE (DHDPS)%3B E%3D5e-58 COG: MJ0244%3B COG0329 Dihydrodipicolinate synthetase/N-acetylneuraminate%3B E%3D5e-69 PFAM: PF00701%3B Dihydrodipicolinate synthetase famil%3B E%3D4.6e-119 gene gene1489 http://www.ncbi.nlm.nih.gov/gene/?term=RB2746 RB2747 RB2747 RB2747 1432443 1432685 + hypothetical protein gene gene1490 http://www.ncbi.nlm.nih.gov/gene/?term=RB2747 RB2748 RB2748 RB2748 1432641 1433804 - hypothetical protein PMID: 9537320 best DB hits: BLAST: pir:D70357%3B conserved hypothetical protein aq_648 - Aquifex aeolicus%3B E%3D2e-86 ddbj:BAB07130.1%3B (AP001518) BH3411~~unknown conserved protein in%3B E%3D7e-81 embl:CAB92115.1%3B (AL356334) conserved hypothetical protein%3B E%3D2e-75 COG: aq_648%3B COG1060 Thiamine biosynthesis enzyme ThiH and related%3B E%3D2e-87 gene gene1491 http://www.ncbi.nlm.nih.gov/gene/?term=RB2748 RB2749 RB2749 ubiA ubiA 1433866 1434783 - 4-hydroxybenzoate octaprenyltransferase PMID: 1644192 best DB hits: BLAST: gb:AAB41844.1%3B (U61168) 4-hydroxybenzoate octaprenyltransferase%3B E%3D3e-34 ddbj:BAB05369.1%3B (AP001512) 4-hydroxybenzoate%3B E%3D4e-34 pir:E70304%3B 4-hydroxybenzoate octaprenyltransferase - Aquifex%3B E%3D2e-31 COG: BH1650%3B COG0382 4-hydroxybenzoate polyprenyltranferase%3B E%3D4e-35 AF2036%3B COG0109 Polyprenyltransferase (cytochrome oxidase assembly%3B E%3D0.006 PFAM: PF01040%3B UbiA prenyltransferase%3B E%3D2e-37 gene gene1492 http://www.ncbi.nlm.nih.gov/gene/?term=RB2749 RB275 RB275 RB275 135370 135819 - hypothetical protein gene gene150 http://www.ncbi.nlm.nih.gov/gene/?term=RB275 RB2750 RB2750 ubiX ubiX 1434797 1435465 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase PMID: 3040734 best DB hits: BLAST: ddbj:BAB05370.1%3B (AP001512) 3-octaprenyl-4-hydroxybenzoate%3B E%3D2e-39 pir:H83144%3B probable aromatic acid decarboxylase PA4019 [imported] -%3B E%3D1e-37 gb:AAB41845.1%3B (U61168) 3-octaprenyl-4-hydroxybenzoate%3B E%3D2e-35 COG: BH1651%3B COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase%3B E%3D1e-40 PFAM: PF02441%3B Flavoprotein%3B E%3D6.5e-28 gene gene1493 http://www.ncbi.nlm.nih.gov/gene/?term=RB2750 RB2752 RB2752 ubiE ubiE 1435462 1436415 - ubiquinone/menaquinone biosynthesis methyltransferase PMID: 9045837 best DB hits: BLAST: pir:F75277%3B ubiquinonemenaquinone biosynthesis methyltransferase -%3B E%3D2e-44 ddbj:BAB05368.1%3B (AP001512) 2-heptaprenyl-1%2C4-naphthoquinone%3B E%3D9e-43 ddbj:BAA25267.1%3B (AB003188) 2-hexaprenyl-1%2C4-naphthoquinone%3B E%3D3e-41 COG: DR2405%3B COG2226 Methylase involved in ubiquinone/menaquinone%3B E%3D2e-45 slr0407%3B COG0500 SAM-dependent methyltransferases%3B E%3D7e-10 PFAM: PF01209%3B ubiE/COQ5 methyltransferase f%3B E%3D2.7e-66 gene gene1494 http://www.ncbi.nlm.nih.gov/gene/?term=RB2752 RB2754 RB2754 RB2754 1436382 1437071 + phosphoglycolate phosphatase PMID: 9371463 PMID: 7603433 best DB hits: BLAST: pir:E69106%3B hypothetical protein MTH1793 - Methanobacterium%3B E%3D3e-05 pir:T44528%3B phosphoglycolate phosphatase (EC 3.1.3.18) [imported] -%3B E%3D3e-04 gb:AAG42459.1%3B AF308467_5 (AF308467) Gph [Klebsiella aerogenes]%3B E%3D3e-04 COG: MTH1793%3B COG0546 Predicted phosphatases%3B E%3D3e-06 PFAM: PF00702%3B haloacid dehalogenase-like hydrolas%3B E%3D1.1e-16 gene gene1495 http://www.ncbi.nlm.nih.gov/gene/?term=RB2754 RB276 RB276 RB276 135460 135786 + hypothetical protein gene gene151 http://www.ncbi.nlm.nih.gov/gene/?term=RB276 RB2761 RB2761 RB2761 1437336 1438115 + outer membrane protein OmpA PMID: 1447140 PMID: 9742696 best DB hits: BLAST: gb:AAD40344.1%3B U88088_22 (U88088) OmpA [Pseudomonas alcaligenes]%3B E%3D5e-08 swissprot:Q10557%3B Y899_MYCTU HYPOTHETICAL 33.6 KDA PROTEIN RV0899%3B E%3D3e-07 gb:AAD39495.1%3B AF145799_1 (AF145799) immunogenic 23 kDa%3B E%3D1e-06 COG: Rv0899%3B COG2885 Outer membrane protein and related%3B E%3D2e-08 aq_1002%3B COG1360 Flagellar motor protein%3B E%3D2e-07 XF0363%3B COG2885 Outer membrane protein and related%3B E%3D1e-05 PFAM: PF01486%3B K-box region%3B E%3D0.5 PF00691%3B OmpA family%3B E%3D4.9e-06 gene gene1496 http://www.ncbi.nlm.nih.gov/gene/?term=RB2761 RB2763 RB2763 RB2763 1438190 1439626 - signal peptide gene gene1497 http://www.ncbi.nlm.nih.gov/gene/?term=RB2763 RB2764 RB2764 RB2764 1439630 1442155 - signal peptide gene gene1498 http://www.ncbi.nlm.nih.gov/gene/?term=RB2764 RB2771 RB2771 RB2771 1442289 1443728 - hypothetical protein best DB hits: BLAST: pir:C83140%3B hypothetical protein PA4048 [imported] - Pseudomonas%3B E%3D2e-04 swissprot:Q9ZC99%3B Y867_RICPR HYPOTHETICAL PROTEIN RP867 -----%3B E%3D0.003 swissprot:P29938%3B YCBV_PSEDE HYPOTHETICAL 25.1 KDA PROTEIN IN COBV%3B E%3D0.007 gene gene1499 http://www.ncbi.nlm.nih.gov/gene/?term=RB2771 RB2774 RB2774 RB2774 1443786 1444034 + hypothetical protein best DB hits: BLAST: pir:E64732%3B yacG protein - Escherichia coli (strain K-12) -----%3B E%3D9e-08 gb:AAK02173.1%3B (AE006044) unknown [Pasteurella multocida]%3B E%3D8e-05 pir:E82078%3B conserved hypothetical protein VC2429 [imported] -%3B E%3D2e-04 COG: yacG%3B COG3024 Uncharacterized BCR%3B E%3D9e-09 gene gene1500 http://www.ncbi.nlm.nih.gov/gene/?term=RB2774 RB278 RB278 RB278 135837 138587 + hypothetical protein gene gene152 http://www.ncbi.nlm.nih.gov/gene/?term=RB278 RB2780 RB2780 greA greA 1444306 1444785 + transcription elongation factor greA PMID: 7854424 best DB hits: BLAST: pir:E81447%3B transcription elongation factor Cj0287c [imported] -%3B E%3D1e-27 swissprot:P43881%3B GREA_HAEIN TRANSCRIPTION ELONGATION FACTOR GREA%3B E%3D3e-27 gb:AAK02799.1%3B (AE006109) GreA [Pasteurella multocida]%3B E%3D4e-27 COG: Cj0287c%3B COG0782 Transcription elongation factor%3B E%3D1e-28 PFAM: PF01272%3B Prokaryotic transcription elongatio%3B E%3D2.6e-47 gene gene1501 http://www.ncbi.nlm.nih.gov/gene/?term=RB2780 RB2781 RB2781 RB2781 1444782 1445540 + hypothetical protein gene gene1502 http://www.ncbi.nlm.nih.gov/gene/?term=RB2781 RB2782 RB2782 RB2782 1445576 1447345 + hypothetical protein gene gene1503 http://www.ncbi.nlm.nih.gov/gene/?term=RB2782 RB2784 RB2784 RB2784 1447454 1448065 - hypothetical protein best DB hits: PFAM: PF01957%3B Protein of unknown function DUF107%3B E%3D0.0039 gene gene1504 http://www.ncbi.nlm.nih.gov/gene/?term=RB2784 RB2785 RB2785 RB2785 1448062 1450374 - hypothetical protein PMID: 10484179 best DB hits: BLAST: ddbj:BAB05075.1%3B (AP001511) BH1356~~unknown conserved protein%3B E%3D4e-10 swissprot:P54465%3B YQEZ_BACSU HYPOTHETICAL 46.5 KD PROTEIN IN%3B E%3D4e-08 COG: BS_yqeZ_1%3B COG1030 Periplasmic serine proteases (ClpP class)%3B E%3D2e-06 BH1356_2%3B COG1585 Membrane protein implicated in regulation of%3B E%3D8e-06 PFAM: PF01957%3B Protein of unknown function DUF107%3B E%3D0.00013 gene gene1505 http://www.ncbi.nlm.nih.gov/gene/?term=RB2785 RB2788 RB2788 RB2788 1450448 1451896 - excitatory amino acid transporter PMID: 8920929 best DB hits: BLAST: swissprot:Q10901%3B EAT1_CAEEL EXCITATORY AMINO ACID TRANSPORTER%3B E%3D3e-53 pir:T29633%3B hypothetical protein C12D12.2 - Caenorhabditis elegans%3B E%3D8e-53 gb:AAB41909.1%3B (U35250) CeGlt-2 [Caenorhabditis elegans]%3B E%3D1e-52 COG: aq_1330%3B COG1301 Na+/H+-dicarboxylate symporters%3B E%3D5e-49 PFAM: PF00375%3B Sodium:dicarboxylate symporter fami%3B E%3D5.2e-115 gene gene1506 http://www.ncbi.nlm.nih.gov/gene/?term=RB2788 RB2789 RB2789 RB2789 1451914 1453692 + hypothetical protein gene gene1507 http://www.ncbi.nlm.nih.gov/gene/?term=RB2789 RB279 RB279 RB279 138584 139510 + ABC transporter ATP-binding protein best DB hits: BLAST: pir:S74476%3B ABC-type transport protein slr1113 - Synechocystis sp.%3B E%3D5e-49 pir:H71008%3B probable ATP-binding transport protein - Pyrococcus%3B E%3D8e-43 pir:S76626%3B ABC-type transport protein sll0489 - Synechocystis sp.%3B E%3D1e-42 COG: slr1113%3B COG1131 ABC-type multidrug transport system%2C ATPase%3B E%3D5e-50 yadG%3B COG1131 ABC-type multidrug transport system%2C ATPase component%3B E%3D1e-34 BH1054_2%3B COG0842 Permease component of an ABC-transporter%3B E%3D1e-34 PFAM: PF02223%3B Thymidylate kinase%3B E%3D0.064 PF00005%3B ABC transporter%3B E%3D2.4e-45 gene gene153 http://www.ncbi.nlm.nih.gov/gene/?term=RB279 RB2794 RB2794 RB2794 1453732 1454757 - deoxyribonuclease gamma [precursor] PMID: 9665719 best DB hits: BLAST: gb:AAC64266.1%3B (AF059612) deoxyribonuclease gamma [Xenopus%3B E%3D1e-19 gb:AAB00496.1%3B (L40823) DNL1L gene product [Homo sapiens]%3B E%3D5e-17 gb:AAB17022.1%3B (U06846) XIB [Homo sapiens]%3B E%3D7e-17 PFAM: PF01181%3B Deoxyribonuclease I (DNase I)%3B E%3D1.3e-10 gene gene1508 http://www.ncbi.nlm.nih.gov/gene/?term=RB2794 RB2795 RB2795 RB2795 1454726 1455370 + hypothetical protein gene gene1509 http://www.ncbi.nlm.nih.gov/gene/?term=RB2795 RB2797 RB2797 RB2797 1455237 1456379 + cytochrome c-554 [precursor] PMID: 8063110 best DB hits: BLAST: swissprot:Q57142%3B C554_NITEU CYTOCHROME C-554 PRECURSOR (C554)%3B E%3D0.003 pdb:1FT5%3B A Chain A%2C Crystal Structure Of The Oxidized State Of%3B E%3D0.003 gene gene1510 http://www.ncbi.nlm.nih.gov/gene/?term=RB2797 RB2799 RB2799 RB2799 1456351 1457280 - general stress protein 69 PMID: 9298659 best DB hits: BLAST: swissprot:P80874%3B GS69_BACSU GENERAL STRESS PROTEIN 69 (GSP69)%3B E%3D6e-29 pir:C83506%3B probable oxidoreductase PA1127 [imported] - Pseudomonas%3B E%3D6e-23 pir:H83328%3B probable oxidoreductase PA2535 [imported] - Pseudomonas%3B E%3D7e-20 COG: BS_yhdN%3B COG0667 Predicted oxidoreductases (related to aryl-alcohol%3B E%3D6e-30 TM1743%3B COG0656 Aldo/keto reductases%2C related to diketogulonate%3B E%3D3e-07 XF0367%3B COG0667 Predicted oxidoreductases (related to aryl-alcohol%3B E%3D4e-07 PFAM: PF00248%3B Aldo/keto reductase%3B E%3D1.3e-12 gene gene1511 http://www.ncbi.nlm.nih.gov/gene/?term=RB2799 RB280 RB280 RB280 139488 139634 - hypothetical protein gene gene154 http://www.ncbi.nlm.nih.gov/gene/?term=RB280 RB2801 RB2801 RB2801 1457396 1457911 + hypothetical protein gene gene1512 http://www.ncbi.nlm.nih.gov/gene/?term=RB2801 RB2804 RB2804 RB2804 1458040 1458645 - hypothetical protein gene gene1513 http://www.ncbi.nlm.nih.gov/gene/?term=RB2804 RB2806 RB2806 RB2806 1458677 1458802 + hypothetical protein gene gene1514 http://www.ncbi.nlm.nih.gov/gene/?term=RB2806 RB2807 RB2807 RB2807 1458786 1459043 - signal peptide gene gene1515 http://www.ncbi.nlm.nih.gov/gene/?term=RB2807 RB2809 RB2809 RB2809 1459065 1459745 - trfA protein PMID: 11759840 best DB hits: BLAST: pir:T14004%3B trfA protein - slime mold (Dictyostelium discoideum)%3B E%3D0.45 PFAM: PF00515%3B TPR Domain%3B E%3D0.00018 gene gene1516 http://www.ncbi.nlm.nih.gov/gene/?term=RB2809 RB281 RB281 groS groS 139597 139926 - molecular chaperone GroES PMID: 10206714 best DB hits: BLAST: gb:AAA83440.1%3B (U29483) GroES-like chaperonin [Thermus aquaticus]%3B E%3D5e-04 swissprot:P56970%3B CH10_CAMJE 10 KDA CHAPERONIN (PROTEIN CPN10)%3B E%3D6e-04 swissprot:P26879%3B CH10_LEGPN 10 KD CHAPERONIN (PROTEIN CPN10)%3B E%3D7e-04 COG: Cj1220%3B COG0234 Co-chaperonin GroES (HSP10)%3B E%3D6e-05 PFAM: PF00166%3B Chaperonin 10 Kd subunit%3B E%3D4.5e-05 gene gene155 http://www.ncbi.nlm.nih.gov/gene/?term=RB281 RB2810 RB2810 RB2810 1459752 1459901 - hypothetical protein gene gene1517 http://www.ncbi.nlm.nih.gov/gene/?term=RB2810 RB2812 RB2812 RB2812 1459843 1461255 + hypothetical protein gene gene1518 http://www.ncbi.nlm.nih.gov/gene/?term=RB2812 RB2817 RB2817 6pgD 6pgD 1461425 1462903 - 6-phosphogluconate dehydrogenase catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate gene gene1519 http://www.ncbi.nlm.nih.gov/gene/?term=RB2817 RB2818 RB2818 RB2818 1462893 1463057 - hypothetical protein gene gene1520 http://www.ncbi.nlm.nih.gov/gene/?term=RB2818 RB2819 RB2819 RB2819 1463064 1463360 + hypothetical protein gene gene1521 http://www.ncbi.nlm.nih.gov/gene/?term=RB2819 RB282 RB282 RB282 140047 141075 - ATPase best DB hits: BLAST: ddbj:BAB03825.1%3B (AP001507) BH0106~~unknown conserved protein%3B E%3D2e-52 swissprot:Q06754%3B YACL_BACSU HYPOTHETICAL 40.9 KD PROTEIN IN%3B E%3D4e-51 swissprot:Q48762%3B YOR6_LISMO HYPOTHETICAL 39.5 KD PROTEIN (ORF6)%3B E%3D8e-51 COG: BH0106%3B COG1855 ATPases of the PilT family%3B E%3D2e-53 PFAM: PF01850%3B PIN domain%3B E%3D0.11 gene gene156 http://www.ncbi.nlm.nih.gov/gene/?term=RB282 RB2822 RB2822 RB2822 1463434 1464933 + hypothetical protein gene gene1522 http://www.ncbi.nlm.nih.gov/gene/?term=RB2822 RB2825 RB2825 ugpQ ugpQ 1464940 1465833 + glycerophosphoryl diester phosphodiesterase PMID: 8012593 best DB hits: BLAST: ddbj:BAB07419.1%3B (AP001519) glycerophosphoryl diester%3B E%3D3e-22 pir:E69827%3B glycerophosphodiester phosphodiesterase homolog yhdW -%3B E%3D5e-21 embl:CAC16430.1%3B (AL450165) secreted hydrolase%3B E%3D5e-16 COG: BH3700%3B COG0584 Glycerophosphoryl diester phosphodiesterase%3B E%3D3e-23 gene gene1523 http://www.ncbi.nlm.nih.gov/gene/?term=RB2825 RB2826 RB2826 RB2826 1465865 1467310 - hypothetical protein gene gene1524 http://www.ncbi.nlm.nih.gov/gene/?term=RB2826 RB2828 RB2828 RB2828 1467281 1467451 + hypothetical protein gene gene1525 http://www.ncbi.nlm.nih.gov/gene/?term=RB2828 RB2829 RB2829 RB2829 1467448 1467564 + hypothetical protein gene gene1526 http://www.ncbi.nlm.nih.gov/gene/?term=RB2829 RB283 RB283 RB283 140975 141220 - hypothetical protein gene gene157 http://www.ncbi.nlm.nih.gov/gene/?term=RB283 RB2830 RB2830 RB2830 1467628 1468854 + signal peptide gene gene1527 http://www.ncbi.nlm.nih.gov/gene/?term=RB2830 RB2832 RB2832 RB2832 1468887 1469096 - hypothetical protein gene gene1528 http://www.ncbi.nlm.nih.gov/gene/?term=RB2832 RB2833 RB2833 RB2833 1469084 1470472 + NADH-dependent dyhydrogenase PMID: 10484179 best DB hits: BLAST: ddbj:BAB04967.1%3B (AP001511) NADH-dependent dyhydrogenase%3B E%3D2e-09 ddbj:BAB05884.1%3B (AP001514) BH2165~~unknown conserved protein%3B E%3D6e-09 ddbj:BAB04429.1%3B (AP001509) BH0710~~unknown conserved protein%3B E%3D1e-07 COG: BH1248%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D2e-10 PFAM: PF01408%3B Oxidoreductase%2C NAD-bin%3B E%3D5.1e-18 gene gene1529 http://www.ncbi.nlm.nih.gov/gene/?term=RB2833 RB2837 RB2837 RB2837 1470531 1472375 + hypothetical protein best DB hits: PFAM: PF01011%3B PQQ enzyme repeat%3B E%3D0.14 gene gene1530 http://www.ncbi.nlm.nih.gov/gene/?term=RB2837 RB2838 RB2838 RB2838 1472478 1472798 + hypothetical protein gene gene1531 http://www.ncbi.nlm.nih.gov/gene/?term=RB2838 RB2839 RB2839 RB2839 1472838 1473710 + hypothetical protein PMID: 10952301 best DB hits: BLAST: pir:G82190%3B conserved hypothetical protein VC1503 [imported] -%3B E%3D5e-59 pir:H83504%3B hypothetical protein PA1116 [imported] - Pseudomonas%3B E%3D2e-57 ddbj:BAB05048.1%3B (AP001511) BH1329~~unknown conserved protein in%3B E%3D2e-17 COG: VC1503%3B COG2996 Uncharacterized BCR%3B E%3D5e-60 gene gene1532 http://www.ncbi.nlm.nih.gov/gene/?term=RB2839 RB284 RB284 dgt dgt 141290 142468 - dGTP triphosphohydrolase PMID: 2826481 best DB hits: BLAST: gb:AAD53927.1%3B AF179611_11 (AF179611) dGTP triphosphohydrolase%3B E%3D5e-51 swissprot:Q9ZE82%3B DGTP_RICPR DEOXYGUANOSINETRIPHOSPHATE%3B E%3D3e-48 pir:F75449%3B dGTP triphosphohydrolase-related protein - Deinococcus%3B E%3D2e-47 COG: RP064%3B COG0232 dGTP triphosphohydrolase%3B E%3D3e-49 MJ1154%3B COG1078 HD superfamily phosphohydrolases%3B E%3D4e-04 PFAM: PF01966%3B HD domain%3B E%3D2.7e-10 gene gene158 http://www.ncbi.nlm.nih.gov/gene/?term=RB284 RB2840 RB2840 RB2840 1473891 1474409 + RNA polymerase sigma factor nccH PMID: 7579621 best DB hits: BLAST: swissprot:P46358%3B RFAY_XANCP PROBABLE RNA POLYMERASE SIGMA FACTOR%3B E%3D0.001 swissprot:Q44583%3B NCCH_ALCXX RNA POLYMERASE SIGMA FACTOR NCCH%3B E%3D0.11 embl:CAB65647.1%3B (AL136149) probable ECF-family sigma factor.%3B E%3D0.14 PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D1.8e-11 gene gene1533 http://www.ncbi.nlm.nih.gov/gene/?term=RB2840 RB2842 RB2842 RB2842 1474406 1476130 + hypothetical protein gene gene1534 http://www.ncbi.nlm.nih.gov/gene/?term=RB2842 RB2845 RB2845 RB2845 1476069 1478816 + hypothetical protein gene gene1535 http://www.ncbi.nlm.nih.gov/gene/?term=RB2845 RB2848 RB2848 RB2848 1478879 1480288 + sulfatase gene gene1536 http://www.ncbi.nlm.nih.gov/gene/?term=RB2848 RB2849 RB2849 RB2849 1480307 1480933 - thioredoxin PMID: 9359865 best DB hits: BLAST: gb:AAB89115.1%3B (AE000956) thioredoxin (trx-4) [Archaeoglobus%3B E%3D2e-07 pir:G82991%3B thioredoxin PA5240 [imported] - Pseudomonas aeruginosa%3B E%3D5e-07 pir:S46921%3B thioredoxin homolog - Mycoplasma capricolum (SGC3)%3B E%3D2e-06 COG: AF2144%3B COG0526 Thiol-disulfide isomerase and thioredoxins%3B E%3D2e-08 PA4061%3B COG3118 Thioredoxin domain-containing protein%3B E%3D3e-04 BS_ydbP%3B COG0526 Thiol-disulfide isomerase and thioredoxins%3B E%3D3e-04 PFAM: PF00085%3B Thioredoxin%3B E%3D0.062 gene gene1537 http://www.ncbi.nlm.nih.gov/gene/?term=RB2849 RB285 RB285 RB285 142498 142722 - hypothetical protein gene gene159 http://www.ncbi.nlm.nih.gov/gene/?term=RB285 RB2850 RB2850 RB2850 1481069 1481812 - hypothetical protein gene gene1538 http://www.ncbi.nlm.nih.gov/gene/?term=RB2850 RB2851 RB2851 RB2851 1481951 1482067 + hypothetical protein gene gene1539 http://www.ncbi.nlm.nih.gov/gene/?term=RB2851 RB2852 RB2852 RB2852 1482149 1482871 - hypothetical protein best DB hits: PFAM: PF02517%3B CAAX amino terminal protease fa%3B E%3D0.0017 gene gene1540 http://www.ncbi.nlm.nih.gov/gene/?term=RB2852 RB2853 RB2853 RB2853 1482846 1482974 + hypothetical protein gene gene1541 http://www.ncbi.nlm.nih.gov/gene/?term=RB2853 RB2855 RB2855 RB2855 1483049 1484464 - serine/threonine-protein kinase pknB PMID: 9634230 best DB hits: BLAST: swissprot:P71584%3B PKNB_MYCTU SERINETHREONINE-PROTEIN%3B E%3D8e-27 swissprot:P54744%3B PKNB_MYCLE SERINETHREONINE-PROTEIN%3B E%3D2e-26 swissprot:P71585%3B PKNA_MYCTU SERINETHREONINE-PROTEIN%3B E%3D2e-25 COG: Rv0014c_1%3B COG0515 Serine/threonine protein kinases%3B E%3D7e-28 PFAM: PF00069%3B Protein kinase domain%3B E%3D6.2e-62 gene gene1542 http://www.ncbi.nlm.nih.gov/gene/?term=RB2855 RB2856 RB2856 RB2856 1484442 1487675 - hypothetical protein gene gene1543 http://www.ncbi.nlm.nih.gov/gene/?term=RB2856 RB286 RB286 RB286 142779 143096 + hypothetical protein gene gene161 http://www.ncbi.nlm.nih.gov/gene/?term=RB286 RB2860 RB2860 RB2860 1487828 1489987 + fimbrial assembly protein PilM PMID: 10567266 best DB hits: BLAST: pir:C75477%3B probable fimbrial assembly protein PilM - Deinococcus%3B E%3D1e-19 gb:AAK00347.1%3B AF329876_3 (AF329876) membrane protein%3B E%3D1e-06 pir:S75816%3B membrane protein pilM - Synechocystis sp. (strain PCC%3B E%3D8e-06 COG: DR0770%3B COG0849 Predicted ATPases of the HSP70 class involved in%3B E%3D1e-20 gene gene1544 http://www.ncbi.nlm.nih.gov/gene/?term=RB2860 RB2863 RB2863 RB2863 1489967 1490074 - hypothetical protein gene gene1545 http://www.ncbi.nlm.nih.gov/gene/?term=RB2863 RB2864 RB2864 RB2864 1490057 1491847 + hypothetical protein gene gene1546 http://www.ncbi.nlm.nih.gov/gene/?term=RB2864 RB2867 RB2867 RB2867 1491909 1494002 + hypothetical protein gene gene1547 http://www.ncbi.nlm.nih.gov/gene/?term=RB2867 RB287 RB287 RB287 142776 143069 - hypothetical protein gene gene160 http://www.ncbi.nlm.nih.gov/gene/?term=RB287 RB2871 RB2871 RB2871 1494009 1495058 + hypothetical protein PMID: 12004073 gene gene1548 http://www.ncbi.nlm.nih.gov/gene/?term=RB2871 RB2872 RB2872 RB2872 1495074 1497053 - signal-transducing histidine kinase PMID: 9278513 best DB hits: BLAST: gb:AAB89763.1%3B (AE001000) signal-transducing histidine kinase%3B E%3D3e-31 swissprot:Q9LCC2%3B PHYA_ANASP CYANOBACTERIAL PHYTOCHROME A -----%3B E%3D3e-28 swissprot:Q55168%3B PHY1_SYNY3 PHYTOCHROME-LIKE PROTEIN CPH1%3B E%3D1e-26 COG: slr0473_3%3B COG0642 Sensory transduction histidine kinases%3B E%3D1e-27 PFAM: PF00785%3B PAC motif%3B E%3D9.9e-06 PF00989%3B PAS domain%3B E%3D1.1e-07 PF00785%3B PAC motif%3B E%3D0.058 gene gene1549 http://www.ncbi.nlm.nih.gov/gene/?term=RB2872 RB2874 RB2874 RB2874 1497050 1497319 - hypothetical protein gene gene1550 http://www.ncbi.nlm.nih.gov/gene/?term=RB2874 RB2875 RB2875 RB2875 1497313 1497534 + hypothetical protein gene gene1551 http://www.ncbi.nlm.nih.gov/gene/?term=RB2875 RB2877 RB2877 RB2877 1497480 1497659 + hypothetical protein gene gene1552 http://www.ncbi.nlm.nih.gov/gene/?term=RB2877 RB2878 RB2878 RB2878 1497670 1498329 + hypothetical protein PMID: 8843436 best DB hits: BLAST: embl:CAB75999.1%3B (AL157916) hypothetical protein [Streptomyces%3B E%3D4e-10 pir:G70571%3B hypothetical protein Rv2616 - Mycobacterium tuberculosis%3B E%3D1e-09 pir:D75322%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D1e-08 gene gene1553 http://www.ncbi.nlm.nih.gov/gene/?term=RB2878 RB2881 RB2881 RB2881 1498390 1499469 - gufA protein PMID: 7934835 best DB hits: BLAST: pir:T29905%3B hypothetical protein F59A3.4 - Caenorhabditis elegans%3B E%3D6e-52 pir:A75447%3B gufA protein - Deinococcus radiodurans (strain R1)%3B E%3D1e-51 pir:A69162%3B gufA protein homolog MTH473 - Methanobacterium%3B E%3D1e-51 COG: DR1032%3B COG0428 Predicted divalent heavy-metal cations transporter%3B E%3D1e-52 gene gene1554 http://www.ncbi.nlm.nih.gov/gene/?term=RB2881 RB2883 RB2883 RB2883 1499497 1499859 + hypothetical protein gene gene1555 http://www.ncbi.nlm.nih.gov/gene/?term=RB2883 RB2884 RB2884 galE galE 1499820 1500890 + UDP-glucose epimerase PMID: 9427545 best DB hits: BLAST: embl:CAA66078.1%3B (X97448) galE [Brucella melitensis]%3B E%3D2e-07 gb:AAC46054.1%3B (U78089) UDP-glucose epimerase [Brucella abortus]%3B E%3D4e-07 pir:A70392%3B UDP-glucose-4-epimerase - Aquifex aeolicus ----- gb:%3B E%3D5e-06 COG: aq_1069%3B COG1087 UDP-glucose 4-epimerase%3B E%3D5e-07 aq_1335%3B COG0451 Nucleoside-diphosphate-sugar epimerases%3B E%3D2e-05 BS_galE%3B COG1087 UDP-glucose 4-epimerase%3B E%3D3e-05 PFAM: PF00106%3B short chain dehydrogenase%3B E%3D7.4e-05 PF01370%3B NAD dependent epimerase/dehydratase%3B E%3D0.0054 gene gene1556 http://www.ncbi.nlm.nih.gov/gene/?term=RB2884 RB2885 RB2885 RB2885 1500863 1501522 + hypothetical protein PMID: 10192388 best DB hits: BLAST: pir:B72102%3B conserved hypothetical protein CP0535 [imported] -%3B E%3D8e-04 pir:A71548%3B hypothetical protein CT178 - Chlamydia trachomatis%3B E%3D0.68 PFAM: PF00901%3B Orbivirus outer capsid protein VP5%3B E%3D0.16 gene gene1557 http://www.ncbi.nlm.nih.gov/gene/?term=RB2885 RB2886 RB2886 RB2886 1501522 1501878 + hypothetical protein gene gene1558 http://www.ncbi.nlm.nih.gov/gene/?term=RB2886 RB2889 RB2889 RB2889 1501869 1503068 + ATP synthase subunit alpha PMID: 10852478 best DB hits: BLAST: embl:CAB67160.1%3B (AJ271079) ATP synthase alpha subunit [Oenothera%3B E%3D0.72 gene gene1559 http://www.ncbi.nlm.nih.gov/gene/?term=RB2889 RB289 RB289 RB289 143024 143932 + dolichol-phosphate mannosyltransferase best DB hits: BLAST: pir:G75191%3B dolichol-phosphate mannosyltransferase PAB2307 -%3B E%3D3e-21 pir:H71223%3B probable dolichol-phosphate mannosyltransferase -%3B E%3D3e-18 gb:AAC98797.1%3B (AF007875) dolichol monophosphate mannose synthase%3B E%3D5e-13 COG: PAB2307_1%3B COG0463 Glycosyltransferases involved in cell wall%3B E%3D3e-22 yfbF%3B COG0463 Glycosyltransferases involved in cell wall biogenesis%3B E%3D5e-12 MTH136%3B COG0463 Glycosyltransferases involved in cell wall%3B E%3D3e-11 PFAM: PF00535%3B Glycosyl transferase%3B E%3D1.1e-23 gene gene162 http://www.ncbi.nlm.nih.gov/gene/?term=RB289 RB2893 RB2893 RB2893 1503130 1505238 - signal peptide gene gene1560 http://www.ncbi.nlm.nih.gov/gene/?term=RB2893 RB2894 RB2894 RB2894 1505235 1505741 - signal peptide best DB hits: PFAM: PF02472%3B Biopolymer transport protein ExbD/To%3B E%3D0.005 gene gene1561 http://www.ncbi.nlm.nih.gov/gene/?term=RB2894 RB2895 RB2895 RB2895 1505738 1506178 - biopolymer transport exbD protein PMID: 2670903 best DB hits: BLAST: pir:S74451%3B hypothetical protein sll1405 - Synechocystis sp. (strain%3B E%3D1e-08 swissprot:P18784%3B EXBD_ECOLI BIOPOLYMER TRANSPORT EXBD PROTEIN%3B E%3D4e-07 gb:AAC78852.1%3B (AF087669) ExbD [Bordetella bronchiseptica]%3B E%3D4e-06 COG: sll1405%3B COG0848 Biopolymer transport protein%3B E%3D1e-09 PFAM: PF02472%3B Biopolymer transport protein ExbD/To%3B E%3D1.1e-11 gene gene1562 http://www.ncbi.nlm.nih.gov/gene/?term=RB2895 RB2897 RB2897 RB2897 1506169 1506909 + methyltransferase PMID: 10086841 best DB hits: BLAST: ddbj:BAB05775.1%3B (AP001514) BH2056~~unknown conserved protein in%3B E%3D3e-20 pir:T45542%3B hypothetical protein [imported] - Klebsiella pneumoniae%3B E%3D8e-13 gb:AAG10237.1%3B AF201699_2 (AF201699) phospholipid%3B E%3D8e-08 COG: BH2056%3B COG0030 Dimethyladenosine transferase (rRNA methylation)%3B E%3D2e-21 APE1011%3B COG2518 Protein-L-isoaspartate carboxylmethyltransferase%3B E%3D0.008 gene gene1563 http://www.ncbi.nlm.nih.gov/gene/?term=RB2897 RB29 RB29 RB29 14498 15148 - hypothetical protein gene gene14 http://www.ncbi.nlm.nih.gov/gene/?term=RB29 RB2900 RB2900 RB2900 1506927 1507199 + hypothetical protein gene gene1564 http://www.ncbi.nlm.nih.gov/gene/?term=RB2900 RB2901 RB2901 RB2901 1507210 1508388 + signal peptide best DB hits: PFAM: PF00432%3B Prenyltransferase and squalene ox%3B E%3D0.6 gene gene1565 http://www.ncbi.nlm.nih.gov/gene/?term=RB2901 RB2905 RB2905 RB2905 1508728 1509531 + signal peptidase-like protein PMID: 10484179 best DB hits: BLAST: ddbj:BAB03764.1%3B (AP001507) signal peptidase-like protein%3B E%3D5e-36 swissprot:P37541%3B YAAT_BACSU HYPOTHETICAL 31.2 KD PROTEIN IN%3B E%3D5e-36 gb:AAK04498.1%3B AE006276_13 (AE006276) HYPOTHETICAL PROTEIN%3B E%3D3e-28 COG: BH0045%3B COG1774 Uncharacterized ACR%2C PSP1 homologs%3B E%3D5e-37 gene gene1566 http://www.ncbi.nlm.nih.gov/gene/?term=RB2905 RB2907 RB2907 RB2907 1509575 1510000 + hypothetical protein gene gene1567 http://www.ncbi.nlm.nih.gov/gene/?term=RB2907 RB2908 RB2908 RB2908 1510001 1510930 + hypothetical protein PMID: 11029001 best DB hits: BLAST: embl:CAC11769.1%3B (AL445064) conserved hypothetical protein%3B E%3D5e-08 pir:F70426%3B conserved hypothetical protein aq_1457 - Aquifex%3B E%3D5e-06 pir:H70323%3B hypothetical protein aq_262 - Aquifex aeolicus -----%3B E%3D5e-05 COG: Ta0630%3B COG0500 SAM-dependent methyltransferases%3B E%3D5e-09 PFAM: PF02874%3B ATP synthase alpha/beta family%3B E%3D0.21 PF01135%3B Protein-L-isoaspartate(D-aspar%3B E%3D0.52 gene gene1568 http://www.ncbi.nlm.nih.gov/gene/?term=RB2908 RB291 RB291 RB291 143933 145348 + hypothetical protein best DB hits: BLAST: gb:AAG20016.1%3B (AE005082) Vng1795c [Halobacterium sp. NRC-1]%3B E%3D2e-30 gb:AAB89520.1%3B (AE000983) A. fulgidus predicted coding region%3B E%3D2e-21 embl:CAB56041.1%3B (Y15115) zeta-carotene desaturase [Anabaena%3B E%3D4e-05 COG: VNG1795C%3B COG1232 Protoporphyrinogen oxidase%3B E%3D2e-31 slr0940%3B COG3349 Uncharacterized ACR%3B E%3D1e-04 PFAM: PF02254%3B KTN NAD-binding domain%3B E%3D0.00031 PF00070%3B Pyridine nucleotide-disulphide oxi%3B E%3D0.00077 PF01266%3B D-amino acid oxidase%3B E%3D0.11 gene gene163 http://www.ncbi.nlm.nih.gov/gene/?term=RB291 RB2910 RB2910 RB2910 1511014 1511319 + hypothetical protein gene gene1569 http://www.ncbi.nlm.nih.gov/gene/?term=RB2910 RB2912 RB2912 RB2912 1511297 1512238 - lipoprotein PMID: 8843436 best DB hits: BLAST: embl:CAB55658.1%3B (AL117385) lipoprotein [Streptomyces%3B E%3D0.033 gene gene1570 http://www.ncbi.nlm.nih.gov/gene/?term=RB2912 RB2914 RB2914 RB2914 1512416 1513744 + signal peptide gene gene1571 http://www.ncbi.nlm.nih.gov/gene/?term=RB2914 RB2917 RB2917 RB2917 1513765 1513959 + hypothetical protein gene gene1572 http://www.ncbi.nlm.nih.gov/gene/?term=RB2917 RB2920 RB2920 RB2920 1513943 1514692 - hypothetical protein gene gene1573 http://www.ncbi.nlm.nih.gov/gene/?term=RB2920 RB2922 RB2922 RB2922 1514631 1514783 + hypothetical protein gene gene1574 http://www.ncbi.nlm.nih.gov/gene/?term=RB2922 RB2923 RB2923 RB2923 1514780 1514887 + hypothetical protein gene gene1575 http://www.ncbi.nlm.nih.gov/gene/?term=RB2923 RB2924 RB2924 RB2924 1515025 1515456 - signal peptide gene gene1576 http://www.ncbi.nlm.nih.gov/gene/?term=RB2924 RB2926 RB2926 RB2926 1515563 1515973 - signal peptide gene gene1577 http://www.ncbi.nlm.nih.gov/gene/?term=RB2926 RB2927 RB2927 RB2927 1516044 1516208 + hypothetical protein gene gene1578 http://www.ncbi.nlm.nih.gov/gene/?term=RB2927 RB2928 RB2928 RB2928 1516229 1516720 - acetyltransferase PMID: 8892832 best DB hits: BLAST: gb:AAC44553.1%3B (U34346) unknown [Paracoccus denitrificans]%3B E%3D6e-33 embl:CAB61920.1%3B (AL133278) acetyltransferase%3B E%3D3e-28 swissprot:Q09927%3B YAL4_SCHPO HYPOTHETICAL 23.8 KD PROTEIN%3B E%3D6e-16 COG: BH2104%3B COG0456 Acetyltransferases%3B E%3D0.007 PFAM: PF00583%3B Acetyltransferase (GNAT) family%3B E%3D2.2e-16 gene gene1579 http://www.ncbi.nlm.nih.gov/gene/?term=RB2928 RB2929 RB2929 RB2929 1516815 1517303 - hypothetical protein gene gene1580 http://www.ncbi.nlm.nih.gov/gene/?term=RB2929 RB293 RB293 mobA mobA 145338 145973 + molybdopterin-guanine dinucleotide biosynthesis protein MobA PMID: 11080634 PMID: 8020507 best DB hits: BLAST: gb:AAG45171.1%3B AF317883_3 (AF317883) molybdopterin cofactor%3B E%3D3e-05 pir:D70864%3B hypothetical protein Rv2453c - Mycobacterium%3B E%3D0.80 gene gene164 http://www.ncbi.nlm.nih.gov/gene/?term=RB293 RB2930 RB2930 RB2930 1517344 1517529 - hypothetical protein gene gene1581 http://www.ncbi.nlm.nih.gov/gene/?term=RB2930 RB2931 RB2931 RB2931 1517535 1518137 - acetyltransferase PMID: 10984043 best DB hits: BLAST: ddbj:BAB04418.1%3B (AP001509) ribosomal-protein-alanine%3B E%3D5e-15 ddbj:BAB05587.1%3B (AP001513) BH1868~~unknown conserved protein%3B E%3D2e-14 pir:E83153%3B conserved hypothetical protein PA3945 [imported] -%3B E%3D2e-14 COG: BH0699%3B COG1670 Acetyltransferases%2C including N-acetylases of%3B E%3D5e-16 PFAM: PF00583%3B Acetyltransferase (GNAT) family%3B E%3D1.1e-14 gene gene1582 http://www.ncbi.nlm.nih.gov/gene/?term=RB2931 RB2932 RB2932 RB2932 1518086 1518346 - hypothetical protein gene gene1583 http://www.ncbi.nlm.nih.gov/gene/?term=RB2932 RB2934 RB2934 RB2934 1518862 1519551 - acyl carrier protein PMID: 2144277 PMID: 10784042 PMID: 11481430 best DB hits: BLAST: swissprot:O67611%3B ACP_AQUAE ACYL CARRIER PROTEIN (ACP) -----%3B E%3D0.018 swissprot:P19372%3B ACP_RHIME ACYL CARRIER PROTEIN (ACP) -----%3B E%3D0.055 swissprot:Q9RG22%3B ACP_RHILE ACYL CARRIER PROTEIN (ACP) -----%3B E%3D0.064 COG: aq_1717a%3B COG0236 Acyl carrier protein%3B E%3D0.002 PFAM: PF00550%3B Phosphopantetheine attachment site%3B E%3D0.3 gene gene1584 http://www.ncbi.nlm.nih.gov/gene/?term=RB2934 RB2936 RB2936 RB2936 1519684 1519908 - tyrosine-protein kinase PMID: 8134129 best DB hits: BLAST: swissprot:P53356%3B HT16_HYDAT tyrosine-protein kinase -----%3B E%3D0.007 gb:AAF37305.1%3B AC005931_3 (AC005931) 6-PhosphoFructo-2-Kinase%3B E%3D0.008 gb:AAF58766.1%3B (AE003828) CG16728 gene product [Drosophila%3B E%3D0.009 PFAM: PF00023%3B Ank repeat%3B E%3D2.4e-08 gene gene1585 http://www.ncbi.nlm.nih.gov/gene/?term=RB2936 RB2939 RB2939 RB2939 1519916 1520407 - integral-membrane protein PMID: 8843436 best DB hits: BLAST: embl:CAB66271.1%3B (AL136519) integral-membrane protein.%3B E%3D1e-06 embl:CAB72202.1%3B (AL138851) integral-membrane protein%3B E%3D5e-06 gene gene1586 http://www.ncbi.nlm.nih.gov/gene/?term=RB2939 RB2940 RB2940 RB2940 1520430 1520870 + hypothetical protein gene gene1587 http://www.ncbi.nlm.nih.gov/gene/?term=RB2940 RB2941 RB2941 RB2941 1520821 1521297 - hypothetical protein gene gene1588 http://www.ncbi.nlm.nih.gov/gene/?term=RB2941 RB2943 RB2943 RB2943 1521275 1521535 + hypothetical protein gene gene1589 http://www.ncbi.nlm.nih.gov/gene/?term=RB2943 RB2945 RB2945 RB2945 1521542 1521682 + hypothetical protein gene gene1590 http://www.ncbi.nlm.nih.gov/gene/?term=RB2945 RB2946 RB2946 RB2946 1521688 1521834 + hypothetical protein gene gene1591 http://www.ncbi.nlm.nih.gov/gene/?term=RB2946 RB2948 RB2948 RB2948 1521903 1522349 - hypothetical protein gene gene1592 http://www.ncbi.nlm.nih.gov/gene/?term=RB2948 RB2949 RB2949 RB2949 1522460 1522972 - hypothetical protein gene gene1593 http://www.ncbi.nlm.nih.gov/gene/?term=RB2949 RB295 RB295 moeA moeA 145984 147264 + molybdopterin biosynthesis protein MoeA PMID: 9515915 PMID: 3045084 best DB hits: BLAST: gb:AAG55200.1%3B AE005263_9 (AE005263) molybdopterin biosynthesis%3B E%3D7e-40 swissprot:P12281%3B MOEA_ECOLI MOLYBDOPTERIN BIOSYNTHESIS MOEA%3B E%3D3e-39 swissprot:Q44243%3B MOEA_ANASP MOLYBDOPTERIN BIOSYNTHESIS MOEA%3B E%3D4e-34 COG: moeA%3B COG0303 Molybdopterin biosynthesis enzyme%3B E%3D2e-40 PFAM: PF00994%3B Molybdenum cofactor biosynthesi%3B E%3D4.4e-76 gene gene165 http://www.ncbi.nlm.nih.gov/gene/?term=RB295 RB2950 RB2950 RB2950 1522929 1523081 - hypothetical protein gene gene1594 http://www.ncbi.nlm.nih.gov/gene/?term=RB2950 RB2951 RB2951 RB2951 1523092 1523616 - hypothetical protein gene gene1595 http://www.ncbi.nlm.nih.gov/gene/?term=RB2951 RB2952 RB2952 RB2952 1523656 1523832 + hypothetical protein gene gene1596 http://www.ncbi.nlm.nih.gov/gene/?term=RB2952 RB2953 RB2953 RB2953 1523812 1524120 - hypothetical protein gene gene1597 http://www.ncbi.nlm.nih.gov/gene/?term=RB2953 RB2955 RB2955 RB2955 1524115 1524438 + hypothetical protein gene gene1598 http://www.ncbi.nlm.nih.gov/gene/?term=RB2955 RB2956 RB2956 RB2956 1524488 1524613 + hypothetical protein gene gene1599 http://www.ncbi.nlm.nih.gov/gene/?term=RB2956 RB2957 RB2957 RB2957 1524625 1524816 - hypothetical protein gene gene1600 http://www.ncbi.nlm.nih.gov/gene/?term=RB2957 RB2958 RB2958 RB2958 1524723 1524962 + hypothetical protein gene gene1601 http://www.ncbi.nlm.nih.gov/gene/?term=RB2958 RB296 RB296 RB296 147231 147404 - hypothetical protein gene gene166 http://www.ncbi.nlm.nih.gov/gene/?term=RB296 RB2960 RB2960 RB2960 1524959 1526428 + hypothetical protein PMID: 9389475 best DB hits: PFAM: PF01011%3B PQQ enzyme repeat%3B E%3D0.12 gene gene1602 http://www.ncbi.nlm.nih.gov/gene/?term=RB2960 RB2962 RB2962 RB2962 1526441 1526764 - hypothetical protein gene gene1603 http://www.ncbi.nlm.nih.gov/gene/?term=RB2962 RB2963 RB2963 RB2963 1526707 1527066 + hypothetical protein gene gene1604 http://www.ncbi.nlm.nih.gov/gene/?term=RB2963 RB2966 RB2966 RB2966 1527063 1529081 + cell division protein FtsH PMID: 8444796 best DB hits: BLAST: pir:E82299%3B cell division protein FtsH VC0637 [imported] - Vibrio%3B E%3D1e-133 swissprot:P28691%3B FTSH_ECOLI CELL DIVISION PROTEIN FTSH -----%3B E%3D1e-129 gb:AAA97508.1%3B (U01376) ATP-binding protein [Escherichia coli]%3B E%3D1e-129 COG: VC0637%3B COG0465 ATP-dependent Zn proteases%3B E%3D1e-134 PFAM: PF00158%3B Sigma-54 interaction domain%3B E%3D0.062 PF00910%3B RNA helicase%3B E%3D0.21 PF01695%3B IstB-like ATP binding protein%3B E%3D0.83 gene gene1605 http://www.ncbi.nlm.nih.gov/gene/?term=RB2966 RB2968 RB2968 RB2968 1529085 1530245 + GTPase PMID: 7542800 best DB hits: BLAST: swissprot:P45339%3B YJEQ_HAEIN HYPOTHETICAL PROTEIN HI1714 -----%3B E%3D2e-35 gb:AAG59360.1%3B AE005649_5 (AE005649) orf%2C hypothetical protein%3B E%3D5e-34 pir:S56389%3B hypothetical 37.7K protein (psd-amiB intergenic region)%3B E%3D8e-34 COG: HI1714%3B COG1162 Predicted GTPases%3B E%3D1e-36 PFAM: PF00005%3B ABC transporter%3B E%3D0.027 PF02421%3B Ferrous iron transport protein B%3B E%3D0.12 gene gene1606 http://www.ncbi.nlm.nih.gov/gene/?term=RB2968 RB297 RB297 amtB amtB 147355 148944 - ammonium transporter best DB hits: BLAST: gb:AAK00343.1%3B AF329498_3 (AF329498) ammonium transporter AmtB%3B E%3D4e-82 gb:AAC38548.1%3B (AF005275) AmtB [Azospirillum brasilense]%3B E%3D3e-81 embl:CAA12410.1%3B (AJ225126) ammonium transporter%2C AmtB%3B E%3D4e-77 COG: PA5287%3B COG0004 Ammonia permeases%3B E%3D2e-76 PFAM: PF00909%3B Ammonium Transporter Family%3B E%3D1.5e-154 gene gene167 http://www.ncbi.nlm.nih.gov/gene/?term=RB297 RB2970 RB2970 RB2970 1530415 1531200 + phosphatidylethanolamine N-methyltransferase PMID: 8340421 best DB hits: BLAST: ddbj:BAA34057.1%3B (AB019196) phosphatidylethanolamine%3B E%3D3e-21 swissprot:Q05197%3B PMTA_RHOSH PHOSPHATIDYLETHANOLAMINE%3B E%3D1e-20 pir:E72392%3B ubiquinonemenaquinone biosynthesis-related protein -%3B E%3D7e-08 COG: TM0318%3B COG0500 SAM-dependent methyltransferases%3B E%3D7e-09 PA5063%3B COG2226 Methylase involved in ubiquinone/menaquinone%3B E%3D1e-05 PA3171%3B COG2227%3B E%3D1e-04 PFAM: PF01209%3B ubiE/COQ5 methyltransferase f%3B E%3D4.9e-06 gene gene1607 http://www.ncbi.nlm.nih.gov/gene/?term=RB2970 RB2971 RB2971 RB2971 1531140 1532180 + hypothetical protein PMID: 10360571 best DB hits: BLAST: embl:CAB61271.1%3B (AL132991) hypothetical protein SCF55.01c%3B E%3D1e-04 pir:F72378%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D0.002 swissprot:O50580%3B DT3E_PSECI D-TAGATOSE 3-EPIMERASE -----%3B E%3D0.10 COG: TM0422%3B COG1082 Predicted endonucleases%3B E%3D2e-04 gene gene1608 http://www.ncbi.nlm.nih.gov/gene/?term=RB2971 RB2973 RB2973 RB2973 1532187 1532315 + hypothetical protein gene gene1609 http://www.ncbi.nlm.nih.gov/gene/?term=RB2973 RB2974 RB2974 glnD glnD 1532322 1534973 - uridylyltransferase/uridylyl-removing enzyme glnD PMID: 11065377 PMID: 8412694 best DB hits: BLAST: gb:AAF17352.1%3B AF155830_1 (AF155830)%3B E%3D1e-62 swissprot:Q9RAE4%3B GLND_RHILV [PROTEIN-PII] URIDYLYLTRANSFERASE%3B E%3D1e-62 swissprot:Q9KPV0%3B GLND_VIBCH [PROTEIN-PII] URIDYLYLTRANSFERASE%3B E%3D1e-61 COG: VC2262%3B COG2844 UTP:GlnB (protein PII) uridylyltransferase%3B E%3D9e-63 PFAM: PF01966%3B HD domain%3B E%3D0.48 PF01842%3B ACT domain%3B E%3D0.0017 gene gene1610 http://www.ncbi.nlm.nih.gov/gene/?term=RB2974 RB2975 RB2975 glnB glnB 1534983 1535384 - nitrogen regulatory protein P-II PMID: 2907369 PMID: 2885322 PMID: 2907369 PMID: 8226691 best DB hits: BLAST: pir:D82102%3B nitrogen regulatory protein P-II VC2239 [imported] -%3B E%3D9e-35 pir:H81961%3B nitrogen regulatory protein P-II 1 NMA0447 [imported] -%3B E%3D3e-34 pir:B81019%3B nitrogen regulatory protein P-II NMB1995 [imported] -%3B E%3D3e-34 COG: VC2239%3B COG0347 Nitrogen regulatory protein PII%3B E%3D9e-36 PFAM: PF00543%3B Nitrogen regulatory protein P-II%3B E%3D7.7e-53 gene gene1611 http://www.ncbi.nlm.nih.gov/gene/?term=RB2975 RB2976 RB2976 RB2976 1535418 1536008 - hypothetical protein PMID: 10484179 best DB hits: BLAST: gb:AAG19830.1%3B (AE005068) Vng1547c [Halobacterium sp. NRC-1]%3B E%3D2e-29 ddbj:BAB05314.1%3B (AP001512) BH1595~~unknown conserved protein%3B E%3D3e-29 pir:G83096%3B conserved hypothetical protein PA4399 [imported] -%3B E%3D8e-29 COG: VNG1547C%3B COG2096 Uncharacterized ACR%3B E%3D2e-30 PFAM: PF01923%3B Protein of unknown function DUF80%3B E%3D6.9e-58 gene gene1612 http://www.ncbi.nlm.nih.gov/gene/?term=RB2976 RB2978 RB2978 RB2978 1536161 1536619 + MutT-family protein PMID: 8843436 best DB hits: BLAST: embl:CAC16440.1%3B (AL450165) MutT-family protein%3B E%3D2e-05 swissprot:P56380%3B AP4A_MOUSE BIS(5'-NUCLEOSYL)-TETRAPHOSPHATASE%3B E%3D5e-05 pir:F75532%3B MutTnudix family protein - Deinococcus radiodurans%3B E%3D3e-04 COG: DR0329%3B COG0494 NTP pyrophosphohydrolases including oxidative damage%3B E%3D3e-05 DR0004%3B COG0494 NTP pyrophosphohydrolases including oxidative%3B E%3D4e-05 DR0550%3B COG0494 NTP pyrophosphohydrolases including oxidative damage%3B E%3D1e-04 PFAM: PF00293%3B MutT-like domain%3B E%3D4.8e-17 gene gene1613 http://www.ncbi.nlm.nih.gov/gene/?term=RB2978 RB2979 RB2979 RB2979 1536671 1537645 + signal peptide best DB hits: PFAM: PF01322%3B Cytochrome C'%3B E%3D0.0044 gene gene1614 http://www.ncbi.nlm.nih.gov/gene/?term=RB2979 RB298 RB298 RB298 148946 149146 - hypothetical protein gene gene168 http://www.ncbi.nlm.nih.gov/gene/?term=RB298 RB2981 RB2981 RB2981 1537699 1537815 - hypothetical protein gene gene1615 http://www.ncbi.nlm.nih.gov/gene/?term=RB2981 RB2982 RB2982 RB2982 1537945 1539789 + chloride channel PMID: 9389475 best DB hits: BLAST: gb:AAB89832.1%3B (AE001006) chloride channel%2C %3B E%3D3e-82 embl:CAC12582.1%3B (AL445067) chloride channel (CLC-3) related%3B E%3D2e-49 pir:B70617%3B hypothetical protein Rv0143c - Mycobacterium%3B E%3D1e-33 COG: AF1415_1%3B COG0038 Chloride channel protein EriC%3B E%3D7e-68 aq_438_2%3B COG0517 CBS domains%3B E%3D6e-09 sll0855%3B COG0038 Chloride channel protein EriC%3B E%3D1e-08 PFAM: PF00654%3B Voltage gated chloride channe%3B E%3D1.8e-62 PF00571%3B CBS domain%3B E%3D1.7e-06 gene gene1616 http://www.ncbi.nlm.nih.gov/gene/?term=RB2982 RB2983 RB2983 RB2983 1539799 1540680 - hydrogen peroxide-inducible genes activator PMID: 9809430 PMID: 2471187 PMID: 2551682 best DB hits: BLAST: swissprot:Q9X725%3B OXYR_ERWCH HYDROGEN PEROXIDE-INDUCIBLE GENES%3B E%3D8e-33 swissprot:P71318%3B OXYR_ERWCA HYDROGEN PEROXIDE-INDUCIBLE GENES%3B E%3D2e-32 gb:AAA24257.1%3B (J04553) oxyR protein [Escherichia coli]%3B E%3D1e-30 COG: oxyR%3B COG0583 Transcriptional regulator%3B E%3D3e-31 PFAM: PF00126%3B Bacterial regulatory helix-turn-heli%3B E%3D1.6e-47 gene gene1617 http://www.ncbi.nlm.nih.gov/gene/?term=RB2983 RB2985 RB2985 RB2985 1540943 1542040 - glycosyltransferase PMID: 8905231 best DB hits: BLAST: pir:S75877%3B hypothetical protein slr1166 - Synechocystis sp. (strain%3B E%3D1e-18 swissprot:Q48453%3B YC07_KLEPN HYPOTHETICAL 41.2 KD PROTEIN IN CPS%3B E%3D5e-09 pir:T46662%3B alpha 1%2C2 N-acetylglucosamine transferase [imported] -%3B E%3D7e-08 COG: slr1166%3B COG0438 Predicted glycosyltransferases%3B E%3D1e-19 PFAM: PF00534%3B Glycosyl transferases group 1%3B E%3D7.8e-18 gene gene1618 http://www.ncbi.nlm.nih.gov/gene/?term=RB2985 RB2986 RB2986 RB2986 1542063 1543823 - oligo-1%2C6-glucosidase PMID: 9692189 best DB hits: BLAST: pir:JE0181%3B oligo-1%2C6-glucosidase (EC 3.2.1.10) - Bacillus%3B E%3D1e-143 ddbj:BAB18518.1%3B (AB003697) oligo-1%2C6-glucosidase [Bacillus%3B E%3D1e-143 gb:AAD50603.1%3B AF096282_1 (AF096282) alpha-glucosidase [Thermus%3B E%3D1e-141 COG: DR1375%3B COG0366 Glycosidases%3B E%3D1e-140 PFAM: PF00128%3B Alpha amylase%2C catalytic domain%3B E%3D1.8e-99 gene gene1619 http://www.ncbi.nlm.nih.gov/gene/?term=RB2986 RB2988 RB2988 RB2988 1543851 1545296 - hypothetical protein PMID: 10360571 best DB hits: BLAST: pir:E72203%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D7e-25 pir:B72278%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D4e-17 gb:AAG45396.1%3B AF307053_11 (AF307053) unknown [Thermococcus%3B E%3D6e-10 COG: TM1852%3B COG2152 Uncharacterized ACR%3B E%3D7e-26 gene gene1620 http://www.ncbi.nlm.nih.gov/gene/?term=RB2988 RB299 RB299 htrA htrA 149063 150331 + serine protease HtrA PMID: 1645840 best DB hits: BLAST: gb:AAK02818.1%3B (AE006110) HtrA [Pasteurella multocida]%3B E%3D0.003 swissprot:P45129%3B HTOA_HAEIN PROBABLE PERIPLASMIC SERINE PROTEASE%3B E%3D0.010 gb:AAC38202.1%3B (AF018151) HtrA [Haemophilus influenzae]%3B E%3D0.010 COG: HI1259%3B COG0265 Trypsin-like serine proteases%2C typically%3B E%3D0.001 degQ%3B COG0265 Trypsin-like serine proteases%2C typically periplasmic%2C%3B E%3D0.009 PFAM: PF00595%3B PDZ domain (Also known as DHR o%3B E%3D5e-11 gene gene169 http://www.ncbi.nlm.nih.gov/gene/?term=RB299 RB2990 RB2990 RB2990 1545303 1547579 - glycosyltransferase PMID: 9537320 best DB hits: BLAST: pir:B70393%3B hypothetical protein aq_1080 - Aquifex aeolicus -----%3B E%3D2e-11 pir:E83367%3B hypothetical protein PA2236 [imported] - Pseudomonas%3B E%3D8e-09 pir:S77553%3B probable hexosyltransferase (EC 2.4.1.-) sll1971%3B E%3D4e-07 COG: aq_1080%3B COG0438 Predicted glycosyltransferases%3B E%3D2e-12 PFAM: PF00534%3B Glycosyl transferases group 1%3B E%3D1.3e-15 gene gene1621 http://www.ncbi.nlm.nih.gov/gene/?term=RB2990 RB2991 RB2991 RB2991 1547583 1548758 - hypothetical protein PMID: 10360571 best DB hits: BLAST: pir:E72203%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D2e-36 pir:B72278%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D9e-34 gb:AAG45396.1%3B AF307053_11 (AF307053) unknown [Thermococcus%3B E%3D5e-18 COG: TM1852%3B COG2152 Uncharacterized ACR%3B E%3D2e-37 gene gene1622 http://www.ncbi.nlm.nih.gov/gene/?term=RB2991 RB2992 RB2992 RB2992 1548650 1550494 - phosphoenolpyruvate-protein phosphotransferase PMID: 7686067 PMID: 2497294 best DB hits: BLAST: ddbj:BAB06792.1%3B (AP001517) PTS system%2C enzyme I [Bacillus%3B E%3D6e-71 swissprot:P08838%3B PT1_BACSU PHOSPHOENOLPYRUVATE-PROTEIN%3B E%3D2e-68 swissprot:O69251%3B PT1_BACME PHOSPHOENOLPYRUVATE-PROTEIN%3B E%3D5e-67 COG: BH3073%3B COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI%3B E%3D5e-72 PFAM: PF00391%3B PEP-utilizing enzyme%2C mobile%3B E%3D2.7e-21 PF02896%3B PEP-utilizing enzyme%2C TIM bar%3B E%3D1.5e-63 gene gene1623 http://www.ncbi.nlm.nih.gov/gene/?term=RB2992 RB2993 RB2993 RB2993 1550491 1550784 - hypothetical protein gene gene1624 http://www.ncbi.nlm.nih.gov/gene/?term=RB2993 RB2995 RB2995 RB2995 1550765 1551052 - hypothetical protein gene gene1625 http://www.ncbi.nlm.nih.gov/gene/?term=RB2995 RB2997 RB2997 RB2997 1551049 1551603 - hypothetical protein gene gene1626 http://www.ncbi.nlm.nih.gov/gene/?term=RB2997 RB2998 RB2998 RB2998 1551732 1552886 - squalene-hopene cyclase PMID: 7894707 best DB hits: BLAST: pir:T35404%3B probable squalene-hopene cyclase - Streptomyces%3B E%3D4e-04 swissprot:P33990%3B SQHC_ZYMMO SQUALENE--HOPENE CYCLASE -----%3B E%3D0.002 pir:T45142%3B squalene-hopene cyclase [imported] - Methylococcus%3B E%3D0.003 COG: slr2089%3B COG1657 Squalene cyclase%3B E%3D0.002 gene gene1627 http://www.ncbi.nlm.nih.gov/gene/?term=RB2998 RB3 RB3 RB3 39 260 + signal peptide gene gene1 http://www.ncbi.nlm.nih.gov/gene/?term=RB3 RB3001 RB3001 RB3001 1553125 1554588 - hypothetical protein best DB hits: PFAM: PF02012%3B BNR repeat%3B E%3D0.05 gene gene1628 http://www.ncbi.nlm.nih.gov/gene/?term=RB3001 RB3003 RB3003 RB3003 1554413 1555936 + serine/threonine protein kinase related protein PMID: 9371463 best DB hits: BLAST: pir:H69064%3B serinethreonine protein kinase related protein -%3B E%3D0.005 gb:AAG31643.1%3B AF309488_1 (AF309488) methanol dehydrogenase large%3B E%3D0.009 pir:F72237%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D0.29 COG: MTH1485%3B COG1520 Uncharacterized proteins of WD40-like repeat family%3B E%3D5e-04 PFAM: PF01011%3B PQQ enzyme repeat%3B E%3D0.00081 gene gene1629 http://www.ncbi.nlm.nih.gov/gene/?term=RB3003 RB3005 RB3005 RB3005 1556094 1556690 - hypothetical protein gene gene1630 http://www.ncbi.nlm.nih.gov/gene/?term=RB3005 RB3006 RB3006 RB3006 1556810 1560271 - sialidase PMID: 1400240 PMID: 8591030 best DB hits: BLAST: pir:A49227%3B sialidase - Actinomyces viscosus ----- gb:%3B E%3D1e-06 pir:S20590%3B exo-alpha-sialidase (EC 3.2.1.18) - Actinomyces viscosus%3B E%3D2e-06 swissprot:Q02834%3B NANH_MICVI SIALIDASE PRECURSOR (NEURAMINIDASE)%3B E%3D3e-05 PFAM: PF02012%3B BNR repeat%3B E%3D0.098 gene gene1631 http://www.ncbi.nlm.nih.gov/gene/?term=RB3006 RB3009 RB3009 RB3009 1560249 1560431 + hypothetical protein gene gene1632 http://www.ncbi.nlm.nih.gov/gene/?term=RB3009 RB301 RB301 mutY mutY 150470 151573 + A/G-specific adenine glycosylase PMID: 2197596 PMID: 9846876 best DB hits: BLAST: gb:AAG58092.1%3B AE005526_5 (AE005526) adenine glycosylase%3B G.C -->%3B E%3D2e-57 swissprot:P17802%3B MUTY_ECOLI AG-SPECIFIC ADENINE GLYCOSYLASE%3B E%3D3e-57 gb:AAK04939.1%3B AE006318_2 (AE006318) AG-specific adenine%3B E%3D2e-55 COG: mutY%3B COG1194 A/G-specific DNA glycosylase%3B E%3D3e-58 aq_282%3B COG0177 Predicted EndoIII-related endonuclease%3B E%3D2e-16 MTH496%3B COG1194 A/G-specific DNA glycosylase%3B E%3D3e-15 PFAM: PF00730%3B HhH-GPD superfamily base exci%3B E%3D4.5e-42 gene gene170 http://www.ncbi.nlm.nih.gov/gene/?term=RB301 RB3010 RB3010 perA perA 1560514 1563087 + peroxidase/catalase PMID: 2670897 best DB hits: BLAST: swissprot:P14412%3B CATA_BACST PEROXIDASECATALASE%3B E%3D0.0 ddbj:BAA36976.1%3B (AB020064) catalase [Bacillus%3B E%3D0.0 ddbj:BAA36977.1%3B (AB020065) catalase [Bacillus%3B E%3D0.0 COG: BH0906%3B COG0376 Catalase (peroxidase I)%3B E%3D0.0 PFAM: PF00141%3B Peroxidase%3B E%3D2.4e-87 gene gene1633 http://www.ncbi.nlm.nih.gov/gene/?term=RB3010 RB3012 RB3012 RB3012 1563069 1563395 - hypothetical protein gene gene1634 http://www.ncbi.nlm.nih.gov/gene/?term=RB3012 RB3013 RB3013 RB3013 1563386 1563619 + hypothetical protein gene gene1635 http://www.ncbi.nlm.nih.gov/gene/?term=RB3013 RB3014 RB3014 RB3014 1563732 1565306 - cell surface glycoprotein (s-layer protein) related protein PMID: 9371463 best DB hits: BLAST: pir:H69068%3B cell surface glycoprotein (s-layer protein) related%3B E%3D2e-25 pir:A72266%3B hypothetical protein - Thermotoga maritima (strain MSB8)%3B E%3D5e-04 gene gene1636 http://www.ncbi.nlm.nih.gov/gene/?term=RB3014 RB3016 RB3016 RB3016 1565377 1565832 - hypothetical protein PMID: 11248100 best DB hits: BLAST: gb:AAK03752.1%3B (AE006203) unknown [Pasteurella multocida]%3B E%3D6e-19 pir:B64825%3B hypothetical protein b0866 - Escherichia coli -----%3B E%3D3e-18 ddbj:BAB04830.1%3B (AP001510) BH1111~~unknown conserved protein%3B E%3D4e-18 COG: ybjQ%3B COG0393 Uncharacterized ACR%3B E%3D3e-19 PFAM: PF01906%3B Domain of unknown function DUF74%3B E%3D2.7e-35 gene gene1637 http://www.ncbi.nlm.nih.gov/gene/?term=RB3016 RB3020 RB3020 RB3020 1565935 1566234 - hypothetical protein gene gene1638 http://www.ncbi.nlm.nih.gov/gene/?term=RB3020 RB3023 RB3023 RB3023 1566414 1566881 - protease ecfE PMID: 11689431 best DB hits: BLAST: ddbj:BAA09768.1%3B (D63481) The KIAA0147 gene product is related to%3B E%3D0.009 gb:AAK02818.1%3B (AE006110) HtrA [Pasteurella multocida]%3B E%3D0.038 swissprot:P37764%3B YAEL_ECOLI HYPOTHETICAL 49.1 KDA PROTEIN IN%3B E%3D0.056 COG: yaeL%3B COG0750 Predicted membrane-associated Zn-dependent proteases 1%3B E%3D0.005 PFAM: PF00595%3B PDZ domain (Also known as DHR or GLG%3B E%3D0.00026 gene gene1639 http://www.ncbi.nlm.nih.gov/gene/?term=RB3023 RB3029 RB3029 RB3029 1567052 1567492 - hypothetical protein gene gene1640 http://www.ncbi.nlm.nih.gov/gene/?term=RB3029 RB303 RB303 RB303 151630 151791 + hypothetical protein gene gene171 http://www.ncbi.nlm.nih.gov/gene/?term=RB303 RB3031 RB3031 RB3031 1567532 1567705 - hypothetical protein gene gene1641 http://www.ncbi.nlm.nih.gov/gene/?term=RB3031 RB3032 RB3032 RB3032 1567813 1569246 + hypothetical protein PMID: 11214968 best DB hits: BLAST: pir:S74039%3B hypothetical protein c0103 - Sulfolobus solfataricus%3B E%3D0.060 pir:T50944%3B hypothetical protein [imported] - Pseudomonas%3B E%3D0.62 PFAM: PF00452%3B Apoptosis regulator proteins%2C Bcl-2%3B E%3D0.19 PF01587%3B Monocarboxylate transporter%3B E%3D0.79 gene gene1642 http://www.ncbi.nlm.nih.gov/gene/?term=RB3032 RB3034 RB3034 RB3034 1569573 1572089 - signal peptide gene gene1643 http://www.ncbi.nlm.nih.gov/gene/?term=RB3034 RB3036 RB3036 RB3036 1572092 1573582 - hypothetical protein gene gene1644 http://www.ncbi.nlm.nih.gov/gene/?term=RB3036 RB3038 RB3038 RB3038 1573758 1573979 + hypothetical protein gene gene1645 http://www.ncbi.nlm.nih.gov/gene/?term=RB3038 RB304 RB304 RB304 151755 153029 + cytochrome-c peroxidase best DB hits: BLAST: pir:B75584%3B cytochrome-c peroxidase (EC 1.11.1.5) DRA0301%3B E%3D2e-45 swissprot:Q49128%3B MAUG_METEX METHYLAMINE UTILIZATION PROTEIN MAUG%3B E%3D9e-45 swissprot:Q50426%3B MAUG_METFL METHYLAMINE UTILIZATION PROTEIN MAUG%3B E%3D2e-42 COG: DRA0301%3B COG1858 Cytochrome c peroxidase%3B E%3D2e-46 gene gene172 http://www.ncbi.nlm.nih.gov/gene/?term=RB304 RB3040 RB3040 RB3040 1573993 1574517 - signal peptide gene gene1646 http://www.ncbi.nlm.nih.gov/gene/?term=RB3040 RB3042 RB3042 RB3042 1574747 1575622 - hypothetical protein gene gene1647 http://www.ncbi.nlm.nih.gov/gene/?term=RB3042 RB3043 RB3043 RB3043 1575707 1575892 + hypothetical protein gene gene1648 http://www.ncbi.nlm.nih.gov/gene/?term=RB3043 RB3044 RB3044 RB3044 1576053 1576196 + signal peptide gene gene1649 http://www.ncbi.nlm.nih.gov/gene/?term=RB3044 RB3045 RB3045 RB3045 1576172 1576411 - hypothetical protein gene gene1650 http://www.ncbi.nlm.nih.gov/gene/?term=RB3045 RB3047 RB3047 RB3047 1576513 1576914 - hypothetical protein gene gene1651 http://www.ncbi.nlm.nih.gov/gene/?term=RB3047 RB3048 RB3048 RB3048 1576919 1577185 + hypothetical protein gene gene1652 http://www.ncbi.nlm.nih.gov/gene/?term=RB3048 RB3050 RB3050 RB3050 1577122 1577619 - hypothetical protein gene gene1653 http://www.ncbi.nlm.nih.gov/gene/?term=RB3050 RB3052 RB3052 RB3052 1577692 1577799 - hypothetical protein gene gene1654 http://www.ncbi.nlm.nih.gov/gene/?term=RB3052 RB3053 RB3053 RB3053 1577917 1579383 - hypothetical protein PMID: 10768931 best DB hits: BLAST: gb:AAK00475.1%3B (AF200692) unknown [Shigella flexneri 2a]%3B E%3D5e-34 pir:H64964%3B probable membrane protein b2001 - Escherichia coli%3B E%3D1e-18 swissprot:P76361%3B YEER_ECOLI HYPOTHETICAL 57.2 KDA PROTEIN IN%3B E%3D1e-18 gene gene1655 http://www.ncbi.nlm.nih.gov/gene/?term=RB3053 RB3055 RB3055 RB3055 1579428 1579586 - hypothetical protein gene gene1656 http://www.ncbi.nlm.nih.gov/gene/?term=RB3055 RB3056 RB3056 RB3056 1579679 1579951 - hypothetical protein gene gene1657 http://www.ncbi.nlm.nih.gov/gene/?term=RB3056 RB3057 RB3057 RB3057 1579920 1580138 + hypothetical protein gene gene1658 http://www.ncbi.nlm.nih.gov/gene/?term=RB3057 RB3059 RB3059 RB3059 1580135 1580323 + hypothetical protein gene gene1659 http://www.ncbi.nlm.nih.gov/gene/?term=RB3059 RB306 RB306 RB306 153262 153450 + hypothetical protein gene gene173 http://www.ncbi.nlm.nih.gov/gene/?term=RB306 RB3060 RB3060 RB3060 1580342 1580947 - signal peptide gene gene1660 http://www.ncbi.nlm.nih.gov/gene/?term=RB3060 RB3061 RB3061 RB3061 1580981 1581151 - hypothetical protein gene gene1661 http://www.ncbi.nlm.nih.gov/gene/?term=RB3061 RB3062 RB3062 RB3062 1581001 1581282 - hypothetical protein gene gene1662 http://www.ncbi.nlm.nih.gov/gene/?term=RB3062 RB3063 RB3063 RB3063 1581333 1581500 + hypothetical protein gene gene1663 http://www.ncbi.nlm.nih.gov/gene/?term=RB3063 RB3064 RB3064 RB3064 1581347 1581532 - hypothetical protein gene gene1664 http://www.ncbi.nlm.nih.gov/gene/?term=RB3064 RB3065 RB3065 RB3065 1581536 1582336 - SAM-dependent methyltransferase PMID: 9384377 best DB hits: BLAST: pir:G69742%3B hypothetical protein ybaJ - Bacillus subtilis -----%3B E%3D7e-69 pir:E83313%3B conserved hypothetical protein PA2650 [imported] -%3B E%3D2e-60 pir:T35744%3B hypothetical protein SC7H2.13 - Streptomyces coelicolor%3B E%3D9e-05 COG: BS_ybaJ%3B COG0500 SAM-dependent methyltransferases%3B E%3D6e-70 gene gene1665 http://www.ncbi.nlm.nih.gov/gene/?term=RB3065 RB3067 RB3067 RB3067 1582389 1582850 - helicase/primase complex protein PMID: 6087149 best DB hits: BLAST: embl:CAA24848.1%3B (V01555) BSLF1 reading frame%2C homologous to RF 6%3B E%3D0.091 gene gene1666 http://www.ncbi.nlm.nih.gov/gene/?term=RB3067 RB3068 RB3068 RB3068 1582898 1583305 + hypothetical protein gene gene1667 http://www.ncbi.nlm.nih.gov/gene/?term=RB3068 RB3069 RB3069 RB3069 1583339 1583455 + hypothetical protein gene gene1668 http://www.ncbi.nlm.nih.gov/gene/?term=RB3069 RB307 RB307 RB307 153443 154873 - NAD-dependent malic enzyme PMID: 2644282 PMID: 36376 best DB hits: BLAST: swissprot:P16468%3B MAOX_BACST NAD-DEPENDENT MALIC ENZYME (NAD-ME)%3B E%3D1e-141 embl:CAB72197.1%3B (AL138851) malate oxidoreductase%3B E%3D1e-135 pir:S74511%3B malic enzyme - Synechocystis sp. (strain PCC 6803)%3B E%3D1e-118 COG: slr0721%3B COG0281 Malic enzyme%3B E%3D1e-119 PFAM: PF01842%3B ACT domain%3B E%3D7.3e-05 PF00390%3B Malic enzyme%3B E%3D0.034 PF01488%3B Shikimate / quinate 5-dehydrogen%3B E%3D0.17 gene gene174 http://www.ncbi.nlm.nih.gov/gene/?term=RB307 RB3070 RB3070 RB3070 1583469 1584986 - oxidoreductase PMID: 10484179 best DB hits: BLAST: ddbj:BAB05884.1%3B (AP001514) BH2165~~unknown conserved protein%3B E%3D1e-09 embl:CAC24034.1%3B (AL512980) ORF-c34_017 [Sulfolobus solfataricus]%3B E%3D4e-09 ddbj:BAB04967.1%3B (AP001511) NADH-dependent dyhydrogenase%3B E%3D1e-08 COG: BH2165%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D1e-10 PFAM: PF01408%3B Oxidoreductase%2C NAD-bindi%3B E%3D1.3e-20 gene gene1669 http://www.ncbi.nlm.nih.gov/gene/?term=RB3070 RB3073 RB3073 RB3073 1585025 1585180 - hypothetical protein gene gene1670 http://www.ncbi.nlm.nih.gov/gene/?term=RB3073 RB3074 RB3074 RB3074 1585164 1585325 - hypothetical protein gene gene1671 http://www.ncbi.nlm.nih.gov/gene/?term=RB3074 RB3075 RB3075 RB3075 1585356 1588022 - hypothetical protein PMID: 10567266 best DB hits: BLAST: gb:AAF12630.1%3B AE001826_99 (AE001826) hypothetical protein%3B E%3D0.33 PFAM: PF00404%3B Dockerin type I repeat%3B E%3D0.54 gene gene1672 http://www.ncbi.nlm.nih.gov/gene/?term=RB3075 RB3077 RB3077 RB3077 1588083 1606106 - cyclic nucleotide-binding protein gene gene1673 http://www.ncbi.nlm.nih.gov/gene/?term=RB3077 RB309 RB309 chlI chlI 154993 156441 - magnesium protoporphyrin chelatase PMID: 8663186 best DB hits: BLAST: pir:G75255%3B probable magnesium protoporphyrin chelatase -%3B E%3D3e-84 pir:D70717%3B hypothetical protein Rv0958 - Mycobacterium tuberculosis%3B E%3D4e-69 gb:AAF82071.1%3B AF232750_3 (AF232750) Rv0958-like protein%3B E%3D2e-25 COG: DR2594%3B COG1239 Mg-chelatase subunit ChlI%3B E%3D2e-85 PFAM: PF01078%3B Magnesium chelatase%2C subunit Chl%3B E%3D1.1e-12 gene gene175 http://www.ncbi.nlm.nih.gov/gene/?term=RB309 RB3097 RB3097 RB3097 1606106 1606459 - hypothetical protein gene gene1674 http://www.ncbi.nlm.nih.gov/gene/?term=RB3097 RB3100 RB3100 RB3100 1606474 1607100 + signal peptide gene gene1675 http://www.ncbi.nlm.nih.gov/gene/?term=RB3100 RB3103 RB3103 dnaE dnaE 1607367 1610966 - DNA polymerase III alpha subunit PMID: 3316192 PMID: 3316192 best DB hits: BLAST: swissprot:O83675%3B DP3A_TREPA DNA POLYMERASE III%2C ALPHA CHAIN -----%3B E%3D0.0 gb:AAD44403.1%3B (AF062920) DNA polymerase III [Thermus aquaticus]%3B E%3D0.0 swissprot:O67125%3B DP3A_AQUAE DNA POLYMERASE III%2C ALPHA CHAIN -----%3B E%3D0.0 COG: TP0669%3B COG0587 DNA polymerase III alpha subunit%3B E%3D0.0 PFAM: PF02231%3B PHP domain N-terminal region%3B E%3D5.8e-32 PF02811%3B PHP domain C-terminal region%3B E%3D2e-36 PF01336%3B OB-fold nucleic acid binding domain%3B E%3D1.4e-08 gene gene1676 http://www.ncbi.nlm.nih.gov/gene/?term=RB3103 RB3107 RB3107 RB3107 1611136 1611366 - hypothetical protein gene gene1677 http://www.ncbi.nlm.nih.gov/gene/?term=RB3107 RB3109 RB3109 mauG mauG 1611359 1612594 + cytochrome-c peroxidase PMID: 7781769 PMID: 1657179 PMID: 8021187 best DB hits: BLAST: pir:B75584%3B cytochrome-c peroxidase (EC 1.11.1.5) DRA0301%3B E%3D1e-36 swissprot:Q50426%3B MAUG_METFL METHYLAMINE UTILIZATION PROTEIN MAUG%3B E%3D9e-36 swissprot:Q49128%3B MAUG_METEX METHYLAMINE UTILIZATION PROTEIN MAUG%3B E%3D2e-31 COG: DRA0301%3B COG1858 Cytochrome c peroxidase%3B E%3D1e-37 gene gene1678 http://www.ncbi.nlm.nih.gov/gene/?term=RB3109 RB3112 RB3112 RB3112 1612763 1613722 + hypothetical protein gene gene1679 http://www.ncbi.nlm.nih.gov/gene/?term=RB3112 RB3114 RB3114 RB3114 1613895 1614395 - signal peptide gene gene1680 http://www.ncbi.nlm.nih.gov/gene/?term=RB3114 RB3116 RB3116 RB3116 1614449 1615129 - signal peptide gene gene1681 http://www.ncbi.nlm.nih.gov/gene/?term=RB3116 RB3117 RB3117 RB3117 1615164 1615433 - hypothetical protein gene gene1682 http://www.ncbi.nlm.nih.gov/gene/?term=RB3117 RB3118 RB3118 RB3118 1615430 1615828 - hypothetical protein gene gene1683 http://www.ncbi.nlm.nih.gov/gene/?term=RB3118 RB3119 RB3119 RB3119 1615923 1616510 - signal peptide gene gene1684 http://www.ncbi.nlm.nih.gov/gene/?term=RB3119 RB3123 RB3123 RB3123 1616646 1617944 - glycosyl hydrolase- kappa-carrageenase precursor PMID: 98242082 best DB hits: BLAST: gb:AAF21820.1%3B AF098954_1 (AF098954) beta-agarase A precursor%3B E%3D1e-08 pir:T18265%3B endo-1%2C3(4)-beta-glucanase (EC 3.2.1.6) - Clostridium%3B E%3D2e-08 embl:CAC27412.1%3B (AJ307315) endo-1%2C3(4)-beta-glucanase%3B E%3D2e-08 COG: TM0024%3B COG2273 Beta-glucanase/Beta-glucan synthetase%3B E%3D5e-09 PFAM: PF00722%3B Glycosyl hydrolases family 16%3B E%3D0.15 PF02018%3B Cellulose binding domain%3B E%3D3.1e-05 gene gene1685 http://www.ncbi.nlm.nih.gov/gene/?term=RB3123 RB3125 RB3125 RB3125 1617972 1618379 - hypothetical protein gene gene1686 http://www.ncbi.nlm.nih.gov/gene/?term=RB3125 RB3127 RB3127 RB3127 1618378 1618584 + hypothetical protein gene gene1687 http://www.ncbi.nlm.nih.gov/gene/?term=RB3127 RB3128 RB3128 RB3128 1618539 1618907 - signal peptide gene gene1688 http://www.ncbi.nlm.nih.gov/gene/?term=RB3128 RB313 RB313 RB313 156664 156945 - hypothetical protein gene gene176 http://www.ncbi.nlm.nih.gov/gene/?term=RB313 RB3131 RB3131 RB3131 1618917 1619042 - hypothetical protein gene gene1689 http://www.ncbi.nlm.nih.gov/gene/?term=RB3131 RB3132 RB3132 RB3132 1619062 1619400 - hypothetical protein gene gene1690 http://www.ncbi.nlm.nih.gov/gene/?term=RB3132 RB3133 RB3133 RB3133 1619477 1620007 + hypothetical protein gene gene1691 http://www.ncbi.nlm.nih.gov/gene/?term=RB3133 RB3136 RB3136 RB3136 1620056 1620661 - hypothetical protein gene gene1692 http://www.ncbi.nlm.nih.gov/gene/?term=RB3136 RB314 RB314 fabD fabD 156968 157897 + malonyl CoA-ACP transacylase PMID: 1339356 PMID: 7768883 best DB hits: BLAST: embl:CAB45522.1%3B (AJ007046) [acyl-carrier protein]%3B E%3D9e-58 pir:T00580%3B probable [acyl-carrier-protein] S-malonyltransferase (EC%3B E%3D1e-57 gb:AAG43518.1%3B AF210698_1 (AF210698) malonyl-CoA:ACP transacylase%3B E%3D1e-56 COG: HI0156%3B COG0331 (acyl-carrier-protein) S-malonyltransferase%3B E%3D6e-52 PFAM: PF00698%3B Acyl transferase domain%3B E%3D3.2e-16 gene gene177 http://www.ncbi.nlm.nih.gov/gene/?term=RB314 RB3140 RB3140 RB3140 1620838 1621173 + hypothetical protein gene gene1693 http://www.ncbi.nlm.nih.gov/gene/?term=RB3140 RB3141 RB3141 RB3141 1621122 1621640 - hypothetical protein PMID: 9278503 best DB hits: BLAST: pir:C65016%3B hypothetical protein b2420 - Escherichia coli (strain%3B E%3D7e-04 gene gene1694 http://www.ncbi.nlm.nih.gov/gene/?term=RB3141 RB3142 RB3142 RB3142 1621173 1621715 + hypothetical protein gene gene1695 http://www.ncbi.nlm.nih.gov/gene/?term=RB3142 RB3144 RB3144 RB3144 1621739 1622785 + integrase/recombinase Y4QK PMID: 7607529 PMID: 9163424 PMID: 8402918 best DB hits: BLAST: swissprot:P55632%3B Y4QK_RHISN INTEGRASERECOMBINASE Y4QK%3B E%3D3e-39 swissprot:P55429%3B Y4EF_RHISN INTEGRASERECOMBINASE Y4EF%3B E%3D1e-32 prf:2115270D%3B integrase [Weeksella zoohelcum]%3B E%3D6e-23 COG: PAB0255%3B COG0582 Integrase%3B E%3D1e-20 PFAM: PF02899%3B Phage integrase%2C N-terminal S%3B E%3D0.3 PF00589%3B Phage integrase%3B E%3D8e-31 gene gene1696 http://www.ncbi.nlm.nih.gov/gene/?term=RB3144 RB3145 RB3145 RB3145 1622800 1623948 + transposase PMID: 7607529 PMID: 9163424 best DB hits: BLAST: prf:2115270C%3B transposase [Weeksella zoohelcum]%3B E%3D1e-33 swissprot:P55631%3B Y4QJ_RHISN TRANSPOSASE Y4QJ -----%3B E%3D1e-32 swissprot:P24607%3B T801_PSESH TRANSPOSASE FOR INSERTION SEQUENCE%3B E%3D2e-09 PFAM: PF01096%3B Transcription factor S-II (TFIIS)%3B E%3D0.19 gene gene1697 http://www.ncbi.nlm.nih.gov/gene/?term=RB3145 RB3146 RB3146 RB3146 1623952 1624248 + hypothetical protein PMID: 7607529 gene gene1698 http://www.ncbi.nlm.nih.gov/gene/?term=RB3146 RB3147 RB3147 RB3147 1624334 1624840 - hypothetical protein gene gene1699 http://www.ncbi.nlm.nih.gov/gene/?term=RB3147 RB3148 RB3148 RB3148 1624932 1625477 - signal peptide gene gene1700 http://www.ncbi.nlm.nih.gov/gene/?term=RB3148 RB3149 RB3149 RB3149 1625576 1626070 - hypothetical protein best DB hits: PFAM: PF02413%3B Domain of unknown function DUF144%3B E%3D0.11 gene gene1701 http://www.ncbi.nlm.nih.gov/gene/?term=RB3149 RB3151 RB3151 RB3151 1626234 1626464 - hypothetical protein gene gene1702 http://www.ncbi.nlm.nih.gov/gene/?term=RB3151 RB3152 RB3152 RB3152 1626461 1626667 - hypothetical protein gene gene1703 http://www.ncbi.nlm.nih.gov/gene/?term=RB3152 RB3153 RB3153 RB3153 1626681 1626911 - hypothetical protein gene gene1704 http://www.ncbi.nlm.nih.gov/gene/?term=RB3153 RB3154 RB3154 RB3154 1626925 1627155 - hypothetical protein gene gene1705 http://www.ncbi.nlm.nih.gov/gene/?term=RB3154 RB3155 RB3155 RB3155 1627149 1627430 - hypothetical protein gene gene1706 http://www.ncbi.nlm.nih.gov/gene/?term=RB3155 RB3157 RB3157 RB3157 1627662 1629014 + integrase/recombinase Y4QK PMID: 7607529 PMID: 9163424 PMID: 8402918 best DB hits: BLAST: gb:AAA88676.1%3B (M33633) unknown protein [Transposon Tn21]%3B E%3D1e-56 embl:CAA75043.1%3B (Y14748) int [Corynebacterium glutamicum]%3B E%3D4e-56 gb:AAF72980.1%3B AF255921_1 (AF255921) recombinase [Shigella%3B E%3D4e-56 COG: VCA0291%3B COG0582 Integrase%3B E%3D1e-49 PFAM: PF00589%3B Phage integrase%3B E%3D2.9e-32 gene gene1707 http://www.ncbi.nlm.nih.gov/gene/?term=RB3157 RB3158 RB3158 RB3158 1628996 1629142 + hypothetical protein gene gene1708 http://www.ncbi.nlm.nih.gov/gene/?term=RB3158 RB3159 RB3159 RB3159 1629116 1629337 - hypothetical protein gene gene1709 http://www.ncbi.nlm.nih.gov/gene/?term=RB3159 RB316 RB316 fabG fabG 158031 158789 + 3-oxoacyl-ACP reductase PMID: 1556094 PMID: 8759840 best DB hits: BLAST: ddbj:BAB06210.1%3B (AP001515) 3-oxoacyl-(acyl-carrier protein)%3B E%3D3e-52 swissprot:Q9X248%3B FABG_THEMA 3-OXOACYL-[ACYL-CARRIER PROTEIN]%3B E%3D7e-50 pir:G75333%3B 3-oxoacyl-acyl carrier protein reductase - Deinococcus%3B E%3D1e-49 COG: BH2491%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D3e-53 BS_fabG%3B COG1028 Dehydrogenases with different specificities%3B E%3D1e-49 RP762%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D7e-48 PFAM: PF00106%3B short chain dehydrogenase%3B E%3D3.2e-73 PF00678%3B Short chain dehydrogenase/reduct%3B E%3D9.9e-16 gene gene178 http://www.ncbi.nlm.nih.gov/gene/?term=RB316 RB3160 RB3160 RB3160 1629437 1630387 - hypothetical protein gene gene1710 http://www.ncbi.nlm.nih.gov/gene/?term=RB3160 RB3164 RB3164 RB3164 1630685 1633777 - hypothetical protein PMID: 2914847 PMID: 1997423 PMID: 3066701 best DB hits: BLAST: swissprot:P21354%3B OM6L_CHLTR 60 KDA OUTER MEMBRANE PROTEIN%2C%3B E%3D9e-20 gb:AAA23119.1%3B (M35148) 60-kDa cysteine-rich outer membrane%3B E%3D9e-20 swissprot:P23603%3B OM6E_CHLTR 60 KDA OUTER MEMBRANE PROTEIN%2C%3B E%3D3e-19 PFAM: PF00313%3B 'Cold-shock' DNA-binding domain%3B E%3D0.64 gene gene1711 http://www.ncbi.nlm.nih.gov/gene/?term=RB3164 RB3171 RB3171 RB3171 1633849 1634319 + hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:D83643%3B hypothetical protein PA0015 [imported] - Pseudomonas%3B E%3D0.011 pir:F70422%3B hypothetical protein aq_1409 - Aquifex aeolicus -----%3B E%3D0.065 gb:AAF06042.1%3B AC009360_7 (AC009360) F16G16.8 [Arabidopsis%3B E%3D0.68 COG: PA0015%3B COG0457 TPR-repeat-containing proteins%3B E%3D0.001 gene gene1712 http://www.ncbi.nlm.nih.gov/gene/?term=RB3171 RB3172 RB3172 RB3172 1634326 1634919 - hypothetical protein gene gene1713 http://www.ncbi.nlm.nih.gov/gene/?term=RB3172 RB3174 RB3174 RB3174 1634867 1636054 - ribosomal large subunit pseudouridine synthase B PMID: 7934829 best DB hits: BLAST: swissprot:O67444%3B YE64_AQUAE HYPOTHETICAL PROTEIN AQ_1464 -----%3B E%3D4e-47 pir:T36871%3B probable pseudouridine synthase - Streptomyces%3B E%3D1e-40 swissprot:O33210%3B YH11_MYCTU HYPOTHETICAL 27.6 KDA PROTEIN RV1711%3B E%3D9e-38 COG: aq_1464%3B COG1187 16S rRNA uridine-516 pseudouridylate synthase and%3B E%3D3e-48 PFAM: PF01479%3B S4 domain%3B E%3D3.1e-11 PF00849%3B RNA pseudouridylate synthase%3B E%3D6.5e-13 gene gene1714 http://www.ncbi.nlm.nih.gov/gene/?term=RB3174 RB3176 RB3176 RB3176 1636311 1637498 - 8-amino-7-oxononanoate synthase PMID: 8763940 PMID: 9387221 best DB hits: BLAST: swissprot:P22806%3B BIOF_BACSH 8-AMINO-7-OXONONANOATE SYNTHASE%3B E%3D1e-57 swissprot:P53556%3B BIOF_BACSU 8-AMINO-7-OXONONANOATE SYNTHASE%3B E%3D7e-57 ddbj:BAB07626.1%3B (AP001520) 8-amino-7-oxononanoate synthase%3B E%3D2e-51 COG: BS_bioF%3B COG0156 7-keto-8-aminopelargonate synthetase and related%3B E%3D6e-58 PFAM: PF01053%3B Cys/Met metabolism PLP-depend%3B E%3D0.00067 PF00222%3B Aminotransferase class-II%3B E%3D1.6e-74 gene gene1716 http://www.ncbi.nlm.nih.gov/gene/?term=RB3176 RB3177 RB3177 RB3177 1637524 1639647 - sulfatase atsG PMID: 9634230 best DB hits: BLAST: pir:F70837%3B probable sulfatase (EC 3.1.6.-) atsG - Mycobacterium%3B E%3D4e-25 prf:2204388A%3B sulphamidase [Homo sapiens]%3B E%3D1e-17 gb:AAF55607.1%3B (AE003724) CG14291 gene product [Drosophila%3B E%3D7e-17 COG: Rv0296c%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D4e-26 PA0924%3B COG3083 Predicted hydrolase of alkaline phosphatase%3B E%3D0.002 PFAM: PF00884%3B Sulfatase%3B E%3D1.3e-07 gene gene1717 http://www.ncbi.nlm.nih.gov/gene/?term=RB3177 RB3179 RB3179 RB3179 1639538 1641973 - hypothetical protein PMID: 10688204 best DB hits: BLAST: pir:B81282%3B probable integral membrane protein Cj1373 [imported] -%3B E%3D3e-08 pir:H71453%3B hypothetical protein PH0287 - Pyrococcus horikoshii%3B E%3D1e-06 pir:A75018%3B transport protein PAB1101 - Pyrococcus abyssi (strain%3B E%3D2e-05 COG: Cj1373%3B COG1033 Membrane proteins related to SecD/SecF%3B E%3D3e-09 gene gene1718 http://www.ncbi.nlm.nih.gov/gene/?term=RB3179 RB318 RB318 acpP acpP 158928 159173 + acyl carrier protein PMID: 1556094 PMID: 2091027 best DB hits: BLAST: gb:AAC63956.1%3B (AF038925) acyl carrier protein precursor%3B E%3D2e-16 pir:E82128%3B acyl carrier protein VC2020 [imported] - Vibrio cholerae%3B E%3D1e-13 pir:F75333%3B acyl carrier protein DR1942 [similarity] - Deinococcus%3B E%3D3e-13 COG: VC2020%3B COG0236 Acyl carrier protein%3B E%3D1e-14 PFAM: PF00550%3B Phosphopantetheine attachment site%3B E%3D2.2e-19 gene gene179 http://www.ncbi.nlm.nih.gov/gene/?term=RB318 RB3185 RB3185 RB3185 1642085 1645993 - hypothetical protein PMID: 10688204 best DB hits: BLAST: pir:E71280%3B probable antibiotic transport protein - syphilis%3B E%3D2e-05 pir:B81282%3B probable integral membrane protein Cj1373 [imported] -%3B E%3D3e-04 pir:D70131%3B conserved hypothetical integral membrane protein BB0252 -%3B E%3D0.003 COG: TP0790%3B COG1033 Membrane proteins related to SecD/SecF%3B E%3D2e-06 PFAM: PF01218%3B Coproporphyrinogen III oxidas%3B E%3D0.021 gene gene1719 http://www.ncbi.nlm.nih.gov/gene/?term=RB3185 RB3189 RB3189 RB3189 1646085 1646393 + hypothetical protein gene gene1720 http://www.ncbi.nlm.nih.gov/gene/?term=RB3189 RB319 RB319 RB319 159334 159621 + hypothetical protein gene gene180 http://www.ncbi.nlm.nih.gov/gene/?term=RB319 RB3190 RB3190 RB3190 1646093 1646326 - hypothetical protein gene gene1721 http://www.ncbi.nlm.nih.gov/gene/?term=RB3190 RB3192 RB3192 RB3192 1646344 1646541 - hypothetical protein gene gene1722 http://www.ncbi.nlm.nih.gov/gene/?term=RB3192 RB3193 RB3193 RB3193 1646511 1647647 + transaldolase PMID: 8616240 best DB hits: BLAST: pir:T36008%3B probable transaldolase - Streptomyces coelicolor -----%3B E%3D7e-21 swissprot:O06812%3B TAL_MYCTU TRANSALDOLASE ----- pir: C70917%3B E%3D3e-17 pir:T48589%3B transaldolase-like protein - Arabidopsis thaliana%3B E%3D3e-17 COG: Rv1448c%3B COG0176 Transaldolase%3B E%3D3e-18 PFAM: PF00923%3B Transaldolase%3B E%3D0.78 gene gene1723 http://www.ncbi.nlm.nih.gov/gene/?term=RB3193 RB3194 RB3194 RB3194 1647492 1648058 - hypothetical protein gene gene1724 http://www.ncbi.nlm.nih.gov/gene/?term=RB3194 RB3195 RB3195 ctpA ctpA 1648239 1650068 - carboxyl-terminal processing protease PMID: 8034700 PMID: 8058761 best DB hits: BLAST: pir:F70144%3B carboxyl-terminal processing proteinase (ctp) homolog -%3B E%3D1e-42 pir:A71677%3B tail-specific proteinase precursor (ctp) RP228 -%3B E%3D2e-41 pir:B83005%3B probable carboxyl-terminal proteinase PA5134 [imported]%3B E%3D8e-40 COG: BB0359%3B COG0793 Periplasmic protease%3B E%3D1e-43 PFAM: PF00515%3B TPR Domain%3B E%3D0.18 PF00595%3B PDZ domain (Also known as DHR or GLG%3B E%3D4.7e-05 gene gene1725 http://www.ncbi.nlm.nih.gov/gene/?term=RB3195 RB3196 RB3196 RB3196 1650093 1650422 + hypothetical protein gene gene1726 http://www.ncbi.nlm.nih.gov/gene/?term=RB3196 RB3197 RB3197 RB3197 1650460 1650780 - hypothetical protein gene gene1727 http://www.ncbi.nlm.nih.gov/gene/?term=RB3197 RB320 RB320 fabF fabF 159618 160907 + 3-oxoacyl-ACP synthase PMID: 7972002 best DB hits: BLAST: pir:G69842%3B 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41)%3B E%3D1e-105 pir:T12022%3B 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41)%3B E%3D1e-103 pir:S77464%3B 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41)%3B E%3D1e-103 COG: BS_yjaY%3B COG0304 3-oxoacyl-(acyl-carrier-protein) synthase I%3B E%3D1e-106 PFAM: PF00896%3B Phosphorylase 2%3B E%3D0.27 PF00108%3B Thiolase%2C N-terminal domain%3B E%3D0.071 PF00109%3B Beta-ketoacyl synthase%2C N-ter%3B E%3D1e-78 gene gene181 http://www.ncbi.nlm.nih.gov/gene/?term=RB320 RB3200 RB3200 RB3200 1650822 1651232 - hypothetical protein gene gene1728 http://www.ncbi.nlm.nih.gov/gene/?term=RB3200 RB3201 RB3201 RB3201 1651271 1651600 - hypothetical protein gene gene1729 http://www.ncbi.nlm.nih.gov/gene/?term=RB3201 RB3202 RB3202 RB3202 1651616 1651732 - hypothetical protein gene gene1730 http://www.ncbi.nlm.nih.gov/gene/?term=RB3202 RB3203 RB3203 RB3203 1651706 1651882 + hypothetical protein gene gene1731 http://www.ncbi.nlm.nih.gov/gene/?term=RB3203 RB3205 RB3205 RB3205 1651849 1652079 - hypothetical protein gene gene1732 http://www.ncbi.nlm.nih.gov/gene/?term=RB3205 RB3207 RB3207 RB3207 1652052 1652453 + hypothetical protein gene gene1733 http://www.ncbi.nlm.nih.gov/gene/?term=RB3207 RB3208 RB3208 RB3208 1652111 1652398 - hypothetical protein gene gene1734 http://www.ncbi.nlm.nih.gov/gene/?term=RB3208 RB321 RB321 RB321 160852 161607 + response regulator PMID: 9741082 best DB hits: BLAST: embl:CAA05049.1%3B (AJ001848) TDIR [Thauera aromatica]%3B E%3D8e-28 gb:AAD12186.1%3B (U57900) DNA binding protein TutB1%3B E%3D1e-24 gb:AAK00179.1%3B AF222754_7 (AF222754) probable nodulation protein%3B E%3D4e-24 COG: PA4196%3B COG2197 Response regulators consisting of a CheY-like%3B E%3D3e-22 PA5511%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D1e-15 uvrY%3B COG2197 Response regulators consisting of a CheY-like receiver%3B E%3D2e-10 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D5.1e-23 PF00196%3B Bacterial regulatory proteins%2C l%3B E%3D5.1e-10 gene gene182 http://www.ncbi.nlm.nih.gov/gene/?term=RB321 RB3210 RB3210 RB3210 1652391 1652681 - hypothetical protein gene gene1735 http://www.ncbi.nlm.nih.gov/gene/?term=RB3210 RB3212 RB3212 RB3212 1652507 1652671 - signal peptide gene gene1736 http://www.ncbi.nlm.nih.gov/gene/?term=RB3212 RB3213 RB3213 RB3213 1652671 1654254 - hypothetical protein PMID: 11823852 gene gene1737 http://www.ncbi.nlm.nih.gov/gene/?term=RB3213 RB3217 RB3217 speD speD 1654251 1654745 - S-adenosylmethionine decarboxylase proenzyme PMID: 11073910 best DB hits: BLAST: swissprot:Q57763%3B Y315_METJA HYPOTHETICAL PROTEIN MJ0315 -----%3B E%3D1e-08 pir:B75030%3B hypothetical protein PAB1162 - Pyrococcus abyssi (strain%3B E%3D4e-07 pir:H71215%3B hypothetical protein PH1992 - Pyrococcus horikoshii%3B E%3D3e-06 COG: MJ0315%3B COG1586 S-adenosylmethionine decarboxylase%3B E%3D1e-09 PFAM: PF02576%3B Uncharacterized BCR%2C YhbC family COG%3B E%3D0.88 PF02675%3B S-adenosylmethionine decarboxylase%3B E%3D1.7e-10 gene gene1738 http://www.ncbi.nlm.nih.gov/gene/?term=RB3217 RB322 RB322 RB322 161698 162702 - multidrug efflux pump PMID: 9925549 best DB hits: BLAST: ddbj:BAA34299.1%3B (AB015853) MexX [Pseudomonas aeruginosa]%3B E%3D5e-05 pir:E82263%3B conserved hypothetical protein VC0913 [imported] -%3B E%3D5e-05 pir:A83342%3B conserved hypothetical protein PA2430 [imported] -%3B E%3D5e-05 COG: VC0913%3B COG0845 Membrane-fusion protein%3B E%3D4e-06 PA2430%3B COG1566 Multidrug resistance efflux pump%3B E%3D5e-06 PA2019%3B COG0845 Membrane-fusion protein%3B E%3D1e-05 PFAM: PF00364%3B Biotin-requiring enzyme%3B E%3D0.46 PF00529%3B HlyD family secretion protein%3B E%3D0.0014 gene gene183 http://www.ncbi.nlm.nih.gov/gene/?term=RB322 RB3221 RB3221 RB3221 1654804 1656024 - hypothetical protein best DB hits: BLAST: pir:E69789%3B hypothetical protein ydjI - Bacillus subtilis -----%3B E%3D3e-25 gb:AAK05447.1%3B AE006367_3 (AE006367) UNKNOWN PROTEIN [Lactococcus%3B E%3D6e-06 ddbj:BAB05524.1%3B (AP001513) BH1805~~unknown conserved protein in%3B E%3D7e-05 gene gene1739 http://www.ncbi.nlm.nih.gov/gene/?term=RB3221 RB3224 RB3224 RB3224 1656004 1656450 + hypothetical protein gene gene1740 http://www.ncbi.nlm.nih.gov/gene/?term=RB3224 RB3226 RB3226 RB3226 1656410 1656550 - hypothetical protein gene gene1741 http://www.ncbi.nlm.nih.gov/gene/?term=RB3226 RB3228 RB3228 RB3228 1656635 1659523 + hypothetical protein gene gene1742 http://www.ncbi.nlm.nih.gov/gene/?term=RB3228 RB3232 RB3232 RB3232 1659575 1660978 + hypothetical protein gene gene1743 http://www.ncbi.nlm.nih.gov/gene/?term=RB3232 RB3233 RB3233 RB3233 1661003 1661179 - hypothetical protein gene gene1744 http://www.ncbi.nlm.nih.gov/gene/?term=RB3233 RB3234 RB3234 RB3234 1661176 1662120 - gluconolactonase precursor PMID: 1482681 best DB hits: BLAST: embl:CAB59581.1%3B (AL132662) possible gluconolactonase precursor%3B E%3D2e-26 pir:A75539%3B probable gluconolactonase - Deinococcus radiodurans%3B E%3D8e-20 pir:B82698%3B gluconolactonase precursor XF1297 [imported] - Xylella%3B E%3D8e-16 COG: DR0277%3B COG3386 Uncharacterized protein%3B E%3D8e-21 gene gene1745 http://www.ncbi.nlm.nih.gov/gene/?term=RB3234 RB3236 RB3236 RB3236 1662038 1663570 - transporter PMID: 9923682 PMID: 7890707 best DB hits: BLAST: pir:E71961%3B probable transporter - Helicobacter pylori (strain J99)%3B E%3D2e-51 pir:F64546%3B sodium-dependent transporter - Helicobacter pylori%3B E%3D8e-51 ddbj:BAA96091.1%3B (AB043024) sodium sulfate or dicarboxylate%3B E%3D1e-45 COG: jhp0200%3B COG0471 Di- and tricarboxylate transporters%3B E%3D2e-52 PAB1107%3B COG1055 Na+/H+ antiporter NhaD and related arsenite%3B E%3D0.001 sll0640%3B COG0471 Di- and tricarboxylate transporters%3B E%3D0.006 PFAM: PF00939%3B Sodium:sulfate symporter transm%3B E%3D1.6e-12 gene gene1746 http://www.ncbi.nlm.nih.gov/gene/?term=RB3236 RB3237 RB3237 RB3237 1663567 1664016 - hypothetical protein best DB hits: BLAST: pir:S34725%3B regulation protein - Serratia marcescens ----- embl:%3B E%3D3e-14 swissprot:P11555%3B FUCU_ECOLI FUCOSE OPERON FUCU PROTEIN -----%3B E%3D0.017 pir:H82496%3B ribose ABC transporter protein VCA0127 [imported] -%3B E%3D0.37 COG: fucU%3B COG1869 Uncharacterized components of ribose/xylose transport%3B E%3D0.002 gene gene1747 http://www.ncbi.nlm.nih.gov/gene/?term=RB3237 RB3239 RB3239 RB3239 1664080 1664898 - D-tagatose 3-epimerase best DB hits: BLAST: swissprot:Q9WYP7%3B Y416_THEMA HYPOTHETICAL PROTEIN TM0416 -----%3B E%3D4e-13 swissprot:O50580%3B DT3E_PSECI D-TAGATOSE 3-EPIMERASE -----%3B E%3D8e-11 swissprot:P73599%3B YD04_SYNY3 HYPOTHETICAL 32.8 KDA PROTEIN SLL1304%3B E%3D4e-10 COG: TM0416%3B COG1082 Predicted endonucleases%3B E%3D4e-14 gene gene1748 http://www.ncbi.nlm.nih.gov/gene/?term=RB3239 RB324 RB324 RB324 162731 162880 + hypothetical protein gene gene184 http://www.ncbi.nlm.nih.gov/gene/?term=RB324 RB3240 RB3240 fkpA fkpA 1665040 1665639 + FKBP-type peptidylprolyl isomerase PMID: 7540828 PMID: 8878048 best DB hits: BLAST: gb:AAK03433.1%3B (AE006173) SlyD [Pasteurella multocida]%3B E%3D9e-21 gb:AAC45696.1%3B (U92229) macrophage infectivity potentiator%3B E%3D5e-19 swissprot:P44760%3B FKBY_HAEIN PROBABLE FKBP-TYPE PEPTIDYL-PROLYL%3B E%3D1e-18 COG: HI0574%3B COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1%3B E%3D9e-20 PFAM: PF00254%3B FKBP-type peptidyl-prolyl cis-trans%3B E%3D8.4e-32 gene gene1749 http://www.ncbi.nlm.nih.gov/gene/?term=RB3240 RB3242 RB3242 RB3242 1665732 1667051 - hypothetical protein PMID: 12024217 gene gene1750 http://www.ncbi.nlm.nih.gov/gene/?term=RB3242 RB3244 RB3244 RB3244 1666949 1667233 - hypothetical protein gene gene1751 http://www.ncbi.nlm.nih.gov/gene/?term=RB3244 RB3245 RB3245 RB3245 1667272 1668279 + protein phosphatase 1 PMID: 11298281 best DB hits: BLAST: gb:AAF81068.1%3B AF223364_3 (AF223364) protein phosphatase 1%3B E%3D3e-27 pir:E71538%3B hypothetical protein CT259 - Chlamydia trachomatis%3B E%3D5e-26 embl:CAA10712.1%3B (AJ132604) pppL protein [Lactococcus lactis]%3B E%3D2e-25 COG: CT259%3B COG0631 Protein serine/threonine phosphatases%3B E%3D4e-27 PFAM: PF00481%3B Protein phosphatase 2C%3B E%3D1.2e-09 gene gene1752 http://www.ncbi.nlm.nih.gov/gene/?term=RB3245 RB3247 RB3247 RB3247 1668390 1668665 - hypothetical protein gene gene1753 http://www.ncbi.nlm.nih.gov/gene/?term=RB3247 RB3248 RB3248 RB3248 1668660 1670687 + hypothetical protein best DB hits: BLAST: pir:G83038%3B probable sensorresponse regulator hybrid PA4856%3B E%3D0.74 gene gene1754 http://www.ncbi.nlm.nih.gov/gene/?term=RB3248 RB3251 RB3251 RB3251 1670684 1672903 + hypothetical protein PMID: 8905231 best DB hits: BLAST: pir:S76102%3B hypothetical protein slr0359 - Synechocystis sp. (strain%3B E%3D3e-99 pir:S76238%3B hypothetical protein sll0267 - Synechocystis sp. (strain%3B E%3D2e-89 pir:S77565%3B hypothetical protein slr2077 - Synechocystis sp. (strain%3B E%3D5e-88 COG: PA0575_4%3B COG2200 Diguanylate cyclase/phosphodiesterase domain 2%3B E%3D1e-59 PFAM: PF00900%3B Ribosomal family S4e%3B E%3D0.72 PF00072%3B Response regulator receiver dom%3B E%3D3.8e-29 PF00785%3B PAC motif%3B E%3D0.054 gene gene1755 http://www.ncbi.nlm.nih.gov/gene/?term=RB3251 RB3252 RB3252 RB3252 1672993 1673976 - hypothetical protein gene gene1756 http://www.ncbi.nlm.nih.gov/gene/?term=RB3252 RB3253 RB3253 RB3253 1673976 1675049 - ABC transporter ATP-binding protein best DB hits: BLAST: ddbj:BAA75396.1%3B (AB013378) YhaQ [Bacillus halodurans]%3B E%3D1e-38 pir:T36523%3B probable ABC-type transport system ATP-binding protein -%3B E%3D2e-38 ddbj:BAB04722.1%3B (AP001510) ABC transporter (ATP-binding protein)%3B E%3D4e-38 COG: BH1003%3B COG1131 ABC-type multidrug transport system%2C ATPase%3B E%3D3e-39 PFAM: PF01495%3B HypB/UreG nucleotide-binding%3B E%3D0.28 PF02223%3B Thymidylate kinase%3B E%3D0.38 PF00005%3B ABC transporter%3B E%3D2.4e-41 gene gene1757 http://www.ncbi.nlm.nih.gov/gene/?term=RB3253 RB3255 RB3255 argJ argJ 1675178 1676410 + bifunctional ornithine acetyltransferase/N-acetylglutamate synthase bifunctional arginine biosynthesis protein ArgJ%3B functions at the 1st and 5th steps in arginine biosynthesis%3B involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate gene gene1758 http://www.ncbi.nlm.nih.gov/gene/?term=RB3255 RB3256 RB3256 RB3256 1676574 1676996 + hypothetical protein PMID: 12004073 gene gene1759 http://www.ncbi.nlm.nih.gov/gene/?term=RB3256 RB3257 RB3257 RB3257 1677159 1677374 + hypothetical protein PMID: 11932238 gene gene1760 http://www.ncbi.nlm.nih.gov/gene/?term=RB3257 RB3258 RB3258 RB3258 1677173 1677397 - hypothetical protein gene gene1761 http://www.ncbi.nlm.nih.gov/gene/?term=RB3258 RB3259 RB3259 RB3259 1677371 1677556 + hypothetical protein gene gene1762 http://www.ncbi.nlm.nih.gov/gene/?term=RB3259 RB3260 RB3260 RB3260 1677574 1677798 - hypothetical protein gene gene1763 http://www.ncbi.nlm.nih.gov/gene/?term=RB3260 RB3261 RB3261 RB3261 1677717 1678001 - hypothetical protein gene gene1764 http://www.ncbi.nlm.nih.gov/gene/?term=RB3261 RB3262 RB3262 RB3262 1678132 1678518 + glyoxylase I family protein PMID: 10952301 best DB hits: BLAST: pir:F82405%3B glyoxylase I family protein VCA0890 [imported] - Vibrio%3B E%3D0.41 PFAM: PF00903%3B Glyoxalase/Bleomycin resistance pr%3B E%3D0.0022 gene gene1765 http://www.ncbi.nlm.nih.gov/gene/?term=RB3262 RB3265 RB3265 gfo gfo 1678635 1679711 - glucose-fructose oxidoreductase PMID: 1537789 PMID: 8472911 PMID: 8994968 best DB hits: BLAST: embl:CAB02496.1%3B (Z80356) glucose-fructose oxidoreductase%3B E%3D5e-07 pdb:1OFG%3B A Chain A%2C Glucose-Fructose Oxidoreductase -----%3B E%3D5e-07 pdb:1EVJ%3B A Chain A%2C Crystal Structure Of Glucose-Fructose%3B E%3D5e-07 COG: BH1248%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D1e-06 PFAM: PF01408%3B Oxidoreductase%2C NAD-bindi%3B E%3D5.1e-14 PF00431%3B CUB domain%3B E%3D0.64 gene gene1766 http://www.ncbi.nlm.nih.gov/gene/?term=RB3265 RB3266 RB3266 rluD rluD 1679865 1680830 - ribosomal large subunit pseudouridine synthase D best DB hits: BLAST: swissprot:Q45480%3B YLYB_BACSU HYPOTHETICAL 33.7 KD PROTEIN IN%3B E%3D4e-31 swissprot:P50513%3B RLUD_ZYMMO RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE%3B E%3D2e-30 ddbj:BAB06261.1%3B (AP001515) BH2542~~unknown conserved protein%3B E%3D3e-30 COG: BH2542%3B COG0564 Pseudouridylate synthases%2C 23S RNA-specific%3B E%3D3e-31 PFAM: PF01479%3B S4 domain%3B E%3D5.2e-10 PF00849%3B RNA pseudouridylate synthase%3B E%3D6.4e-30 gene gene1767 http://www.ncbi.nlm.nih.gov/gene/?term=RB3266 RB3267 RB3267 RB3267 1680916 1682214 - hypothetical protein gene gene1768 http://www.ncbi.nlm.nih.gov/gene/?term=RB3267 RB3268 RB3268 RB3268 1682308 1683003 - hypothetical protein gene gene1769 http://www.ncbi.nlm.nih.gov/gene/?term=RB3268 RB327 RB327 RB327 162916 163155 + hypothetical protein gene gene185 http://www.ncbi.nlm.nih.gov/gene/?term=RB327 RB3271 RB3271 pknB pknB 1683018 1684001 + serine/threonine-protein kinase pknB PMID: 8969512 best DB hits: BLAST: gb:AAF73695.1%3B (AE002226) serinethreonine-protein kinase%3B E%3D6e-30 pir:G71532%3B probable threoninetyrosine-specific protein kinase (EC%3B E%3D3e-29 gb:AAF73573.1%3B (AE002326) serinethreonine protein kinase%3B E%3D1e-28 COG: CT301_1%3B COG0515 Serine/threonine protein kinases%3B E%3D3e-30 PFAM: PF00069%3B Protein kinase domain%3B E%3D0.0026 gene gene1770 http://www.ncbi.nlm.nih.gov/gene/?term=RB3271 RB3272 RB3272 gyrB gyrB 1683998 1684729 + DNA gyrase subunit B PMID: 8863738 best DB hits: BLAST: gb:AAF89615.1%3B AF167433_1 (AF167433) gyrase B [Thermus%3B E%3D5e-18 pir:JC4960%3B DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) B -%3B E%3D1e-16 swissprot:P77993%3B GYRB_THEMA DNA GYRASE SUBUNIT B (TOPOISOMERASE%3B E%3D1e-16 COG: TM0833%3B COG0187 DNA gyrase (topoisomerase II) B subunit%3B E%3D1e-17 PFAM: PF01751%3B Toprim domain%3B E%3D0.81 gene gene1771 http://www.ncbi.nlm.nih.gov/gene/?term=RB3272 RB3274 RB3274 RB3274 1684712 1685734 - hypothetical protein PMID: 9278503 best DB hits: BLAST: pir:E65030%3B hypothetical protein b2534 - Escherichia coli (strain%3B E%3D3e-07 gb:AAG57647.1%3B AE005483_6 (AE005483) enzyme (3.4.-)%3B E%3D3e-07 gb:AAF51169.1%3B (AE003581) Bem46 gene product [Drosophila%3B E%3D2e-06 COG: yfhR%3B COG1073 Hydrolases of the alpha/beta superfamily%3B E%3D3e-08 VC1451%3B COG2931 RTX toxins and related Ca2+-binding proteins%3B E%3D0.001 PA3695%3B COG1073 Hydrolases of the alpha/beta superfamily%3B E%3D0.004 PFAM: PF00561%3B alpha/beta hydrolase fold%3B E%3D0.37 gene gene1772 http://www.ncbi.nlm.nih.gov/gene/?term=RB3274 RB3276 RB3276 RB3276 1685794 1686438 + hypothetical protein gene gene1773 http://www.ncbi.nlm.nih.gov/gene/?term=RB3276 RB3277 RB3277 RB3277 1685887 1686552 - hypothetical protein gene gene1774 http://www.ncbi.nlm.nih.gov/gene/?term=RB3277 RB328 RB328 pyrE pyrE 163156 163788 - orotate phosphoribosyltransferase PMID: 6207018 PMID: 1709162 best DB hits: BLAST: pir:B70464%3B probable orotate phosphoribosyltransferase (EC 2.4.2.10)%3B E%3D3e-31 pir:S76099%3B probable orotate phosphoribosyltransferase (EC 2.4.2.10)%3B E%3D7e-27 pir:A70834%3B probable orotate phosphoribosyltransferase (EC 2.4.2.10)%3B E%3D1e-26 COG: aq_1907%3B COG0461 Orotate phosphoribosyltransferase%3B E%3D3e-32 MJ1655%3B COG0503 Adenine/guanine phosphoribosyltransferases and%3B E%3D3e-05 HI0272%3B COG0461 Orotate phosphoribosyltransferase%3B E%3D3e-05 PFAM: PF00156%3B Phosphoribosyl transferase domai%3B E%3D7e-27 gene gene186 http://www.ncbi.nlm.nih.gov/gene/?term=RB328 RB3280 RB3280 RB3280 1686539 1686862 - hypothetical protein gene gene1775 http://www.ncbi.nlm.nih.gov/gene/?term=RB3280 RB3281 RB3281 hup hup 1686853 1687272 - DNA-binding protein HU PMID: 1644313 PMID: 7765961 PMID: 6300069 PMID: 3566914 PMID: 6540370 PMID: 7500343 best DB hits: BLAST: swissprot:P02346%3B DBH_BACST DNA-BINDING PROTEIN II (HB) (HU)%3B E%3D2e-13 prf:1702428A%3B DNA binding protein HU [Bacillus caldolyticus]%3B E%3D1e-12 swissprot:P08821%3B DBH_BACSU DNA-BINDING PROTEIN II (HB) (HU)%3B E%3D4e-12 COG: BS_hbs%3B COG0776 Bacterial nucleoid DNA-binding protein%3B E%3D4e-13 PFAM: PF00216%3B Bacterial DNA-binding protein%3B E%3D2.5e-29 gene gene1776 http://www.ncbi.nlm.nih.gov/gene/?term=RB3281 RB3283 RB3283 RB3283 1687415 1687864 - hypothetical protein PMID: 9923682 best DB hits: BLAST: swissprot:Q9ZMG1%3B Y274_HELPJ HYPOTHETICAL PROTEIN HP0274JHP0259%3B E%3D8e-18 swissprot:P56132%3B Y274_HELPY HYPOTHETICAL PROTEIN HP0274 -----%3B E%3D3e-16 pir:C81395%3B hypothetical protein Cj0496 [imported] - Campylobacter%3B E%3D1e-13 COG: jhp0259%3B COG0727 Predicted Fe-S-cluster oxidoreductase%3B E%3D7e-19 gene gene1777 http://www.ncbi.nlm.nih.gov/gene/?term=RB3283 RB3285 RB3285 RB3285 1687874 1688008 + hypothetical protein gene gene1778 http://www.ncbi.nlm.nih.gov/gene/?term=RB3285 RB3286 RB3286 RB3286 1688005 1688130 - hypothetical protein gene gene1779 http://www.ncbi.nlm.nih.gov/gene/?term=RB3286 RB3287 RB3287 cysA cysA 1688084 1689667 + sulfate ABC transport ATP-binding protein PMID: 2188958 best DB hits: BLAST: gb:AAF43869.1%3B AF166114_81 (AF166114) probable transport protein%3B E%3D3e-22 gb:AAG19353.1%3B (AE005030) spermidineputrescine ABC transporter%3B E%3D7e-22 pir:B81966%3B probable ABC transport ATP-binding protein NMA0485%3B E%3D7e-22 COG: VNG0921G%3B COG1130 ABC-type sugar/spermidine/putrescine transport%3B E%3D6e-23 NMB1966%3B COG1127 Uncharacterized ABC-type transport system%2C ATPase%3B E%3D9e-23 slr1455%3B COG1118 ABC-type sulfate/molybdate transport systems%2C%3B E%3D3e-22 PFAM: PF01078%3B Magnesium chelatase%2C subunit Chl%3B E%3D0.58 PF00005%3B ABC transporter%3B E%3D2.1e-43 PF02405%3B Domain of unknown function DUF14%3B E%3D7.9e-07 gene gene1780 http://www.ncbi.nlm.nih.gov/gene/?term=RB3287 RB3291 RB3291 RB3291 1689687 1689857 + hypothetical protein gene gene1781 http://www.ncbi.nlm.nih.gov/gene/?term=RB3291 RB3292 RB3292 bioA bioA 1689919 1691202 + adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA PMID: 3058702 best DB hits: BLAST: gb:AAG53588.1%3B AF248314_3 (AF248314) DAPA aminotransferase BioA%3B E%3D2e-95 swissprot:P53656%3B BIOA_ERWHE%3B E%3D3e-92 gb:AAG60578.1%3B AF250776_2 (AF250776) DAPA-aminotransferase BioA%3B E%3D3e-91 COG: bioA%3B COG0161 Adenosylmethionine-8-amino-7-oxononanoate%3B E%3D3e-92 PFAM: PF00202%3B Aminotransferase class-III%3B E%3D3e-129 gene gene1782 http://www.ncbi.nlm.nih.gov/gene/?term=RB3292 RB3293 RB3293 RB3293 1691190 1692062 - hypothetical protein gene gene1783 http://www.ncbi.nlm.nih.gov/gene/?term=RB3293 RB3295 RB3295 RB3295 1692259 1692681 - signal peptide gene gene1784 http://www.ncbi.nlm.nih.gov/gene/?term=RB3295 RB3298 RB3298 RB3298 1692678 1692797 - hypothetical protein gene gene1785 http://www.ncbi.nlm.nih.gov/gene/?term=RB3298 RB3299 RB3299 RB3299 1692925 1693917 - hypothetical protein best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene1786 http://www.ncbi.nlm.nih.gov/gene/?term=RB3299 RB33 RB33 RB33 15460 15627 - hypothetical protein gene gene16 http://www.ncbi.nlm.nih.gov/gene/?term=RB33 RB3301 RB3301 RB3301 1694056 1694208 - hypothetical protein gene gene1787 http://www.ncbi.nlm.nih.gov/gene/?term=RB3301 RB3302 RB3302 RB3302 1694269 1694481 - hypothetical protein gene gene1788 http://www.ncbi.nlm.nih.gov/gene/?term=RB3302 RB3303 RB3303 RB3303 1694447 1695709 - hypothetical protein PMID: 9371463 best DB hits: BLAST: pir:B69061%3B hypothetical protein MTH1458 - Methanobacterium%3B E%3D9e-51 PFAM: PF00633%3B Helix-hairpin-helix motif.%3B E%3D0.049 gene gene1789 http://www.ncbi.nlm.nih.gov/gene/?term=RB3303 RB3304 RB3304 RB3304 1695663 1695842 - hypothetical protein gene gene1790 http://www.ncbi.nlm.nih.gov/gene/?term=RB3304 RB3305 RB3305 RB3305 1695825 1697258 + hypothetical protein gene gene1791 http://www.ncbi.nlm.nih.gov/gene/?term=RB3305 RB3309 RB3309 RB3309 1697377 1699431 + N-acetylgalactosamine 6-sulfatase (GALNS) PMID: 8020961 best DB hits: BLAST: ddbj:BAA04535.1%3B (D17629) N-acetylgalactosamine 6-sulfate%3B E%3D3e-39 gb:AAF63858.1%3B (AF112242) N-acetylgalactosamine-6-sulfate%3B E%3D3e-33 embl:CAA36398.1%3B (X52150) arylsulphatase a [Homo sapiens]%3B E%3D9e-32 COG: aslA%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D1e-19 VC2041%3B COG3083 Predicted hydrolase of alkaline phosphatase%3B E%3D0.007 PFAM: PF00884%3B Sulfatase%3B E%3D4.4e-58 gene gene1792 http://www.ncbi.nlm.nih.gov/gene/?term=RB3309 RB331 RB331 RB331 163877 165901 + hypothetical protein gene gene187 http://www.ncbi.nlm.nih.gov/gene/?term=RB331 RB3312 RB3312 RB3312 1699428 1700390 + 2-dehydropantoate 2-reductase catalyzes the formation of 2-dehydropantoate from (R)-pantoate gene gene1793 http://www.ncbi.nlm.nih.gov/gene/?term=RB3312 RB3313 RB3313 RB3313 1700394 1702646 - RNA binding protein PMID: 10952301 best DB hits: BLAST: pir:E82042%3B conserved hypothetical protein VC2716 [imported] -%3B E%3D0.0 swissprot:P57072%3B YHGF_NEIMA HYPOTHETICAL PROTEIN NMA0194 -----%3B E%3D1e-179 swissprot:P71353%3B YHGF_HAEIN HYPOTHETICAL PROTEIN HI0568 -----%3B E%3D1e-177 COG: VC2716%3B COG2183 Predicted RNA binding protein%2C contains S1 domain%3B E%3D0.0 Rv1630%3B COG0539 Ribosomal protein S1%3B E%3D2e-06 BS_comEA%3B COG1555 DNA uptake protein and related DNA-binding%3B E%3D3e-06 PFAM: PF00633%3B Helix-hairpin-helix motif.%3B E%3D0.51 PF00575%3B S1 RNA binding domain%3B E%3D4.4e-25 gene gene1794 http://www.ncbi.nlm.nih.gov/gene/?term=RB3313 RB3314 RB3314 ftsH ftsH 1702618 1703202 - cell division protein FtsH PMID: 8444796 best DB hits: BLAST: pir:F72009%3B cell division protein FtsH%2C probable CP0857 [imported] -%3B E%3D2e-04 pir:D71463%3B probable ATP-dependent zinc proteinase - Chlamydia%3B E%3D4e-04 pir:F81725%3B cell division protein FtsH%2C probable TC0229 [imported] -%3B E%3D5e-04 COG: CPn0998%3B COG0465 ATP-dependent Zn proteases%3B E%3D2e-05 PFAM: PF01434%3B Peptidase M41%3B E%3D0.4 gene gene1795 http://www.ncbi.nlm.nih.gov/gene/?term=RB3314 RB3317 RB3317 RB3317 1703379 1704821 + NADH-dependent dehydrogenase-like protein PMID: 9584149 best DB hits: BLAST: gb:AAC23913.1%3B (AF039207) NADH-dependent dehydrogenase homolog%3B E%3D3e-13 pir:B72359%3B lipopolysaccharide biosynthesis protein BplA -%3B E%3D2e-12 embl:CAC24034.1%3B (AL512980) ORF-c34_017 [Sulfolobus solfataricus]%3B E%3D2e-08 COG: TM0585%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D2e-13 PFAM: PF01408%3B Oxidoreductase%2C NAD-bin%3B E%3D1.1e-12 gene gene1796 http://www.ncbi.nlm.nih.gov/gene/?term=RB3317 RB3320 RB3320 RB3320 1704965 1706551 + signal peptide PMID: 11481432 gene gene1797 http://www.ncbi.nlm.nih.gov/gene/?term=RB3320 RB3321 RB3321 RB3321 1706568 1706927 - hypothetical protein PMID: 10952301 best DB hits: BLAST: pir:F82461%3B conserved hypothetical protein VCA0415 [imported] -%3B E%3D3e-33 gb:AAB81981.1%3B (AF025662) unknown [Vibrio cholerae]%3B E%3D1e-32 pir:A82473%3B conserved hypothetical protein VCA0338 [imported] -%3B E%3D4e-32 COG: VCA0415%3B COG3324 Uncharacterized BCR%3B E%3D3e-34 PFAM: PF00903%3B Glyoxalase/Bleomycin resistance pr%3B E%3D0.00045 gene gene1798 http://www.ncbi.nlm.nih.gov/gene/?term=RB3321 RB3322 RB3322 RB3322 1707004 1709979 - cytochrome c PMID: 2544196 best DB hits: BLAST: swissprot:P56205%3B CYC_ASPNG CYTOCHROME C ----- pir: A61490%3B E%3D0.005 pir:S41568%3B cytochrome c - Emericella nidulans%3B E%3D0.025 swissprot:P38091%3B CYC_EMENI CYTOCHROME C ----- gb: AAB50255.1%3B E%3D0.025 PFAM: PF00034%3B Cytochrome c%3B E%3D0.0014 gene gene1799 http://www.ncbi.nlm.nih.gov/gene/?term=RB3322 RB3324 RB3324 RB3324 1709976 1711454 - signal peptide PMID: 12004073 gene gene1800 http://www.ncbi.nlm.nih.gov/gene/?term=RB3324 RB3326 RB3326 RB3326 1711353 1711640 + hypothetical protein gene gene1801 http://www.ncbi.nlm.nih.gov/gene/?term=RB3326 RB3327 RB3327 RB3327 1711372 1711680 + hypothetical protein gene gene1802 http://www.ncbi.nlm.nih.gov/gene/?term=RB3327 RB3328 RB3328 RB3328 1711598 1711795 + hypothetical protein gene gene1803 http://www.ncbi.nlm.nih.gov/gene/?term=RB3328 RB3329 RB3329 RB3329 1711743 1711937 - hypothetical protein gene gene1804 http://www.ncbi.nlm.nih.gov/gene/?term=RB3329 RB3330 RB3330 RB3330 1711966 1713321 - dehydrogenase PMID: 10484179 best DB hits: BLAST: ddbj:BAB05939.1%3B (AP001514) dehydrogenase [Bacillus halodurans]%3B E%3D1e-06 swissprot:O05389%3B YRBE_BACSU HYPOTHETICAL 37.8 KDA PROTEIN IN%3B E%3D3e-05 swissprot:Q44258%3B CBAC_ALCSB 1-CARBOXY-3-CHLORO-3%2C4-DIHYDROXYCYCLO%3B E%3D6e-05 COG: BH2220%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D1e-07 PFAM: PF01408%3B Oxidoreductase%2C NAD-bin%3B E%3D4.6e-08 gene gene1805 http://www.ncbi.nlm.nih.gov/gene/?term=RB3330 RB3332 RB3332 RB3332 1713290 1713472 + hypothetical protein gene gene1806 http://www.ncbi.nlm.nih.gov/gene/?term=RB3332 RB3333 RB3333 RB3333 1713409 1713528 + hypothetical protein gene gene1807 http://www.ncbi.nlm.nih.gov/gene/?term=RB3333 RB3337 RB3337 RB3337 1713525 1713749 - hypothetical protein gene gene1808 http://www.ncbi.nlm.nih.gov/gene/?term=RB3337 RB3338 RB3338 idh idh 1713739 1714893 - myo-inositol 2-dehydrogenase PMID: 1761221 PMID: 112095 best DB hits: BLAST: ddbj:BAA97119.1%3B (AB035122)%3B E%3D9e-09 pir:S76068%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D3e-08 swissprot:P26935%3B MI2D_BACSU MYO-INOSITOL 2-DEHYDROGENASE -----%3B E%3D1e-07 COG: slr0338%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D3e-09 PFAM: PF01408%3B Oxidoreductase%2C NAD-bin%3B E%3D6.7e-37 gene gene1809 http://www.ncbi.nlm.nih.gov/gene/?term=RB3338 RB334 RB334 RB334 166018 168441 + copper-transporting ATPase PMID: 8490659 best DB hits: BLAST: gb:AAD11750.1%3B (AF067954) cation transporting P-type%3B E%3D0.0 swissprot:Q9X5V3%3B ATCU_RHILV COPPER-TRANSPORTING ATPASE -----%3B E%3D0.0 embl:CAC07984.1%3B (AJ278983) CopF Cu-ATPase [Ralstonia%3B E%3D1e-180 COG: sll1920%3B COG2217 Cation transport ATPases%3B E%3D1e-150 PFAM: PF00122%3B E1-E2 ATPase%3B E%3D1.8e-93 PF00702%3B haloacid dehalogenase-like hyd%3B E%3D1.8e-32 gene gene188 http://www.ncbi.nlm.nih.gov/gene/?term=RB334 RB3340 RB3340 RB3340 1714857 1715687 - glucosamine-6-phosphate isomerase 2 PMID: 8747459 best DB hits: BLAST: swissprot:O31458%3B YBFT_BACSU HYPOTHETICAL 27.3 KD PROTEIN IN%3B E%3D2e-44 swissprot:O35000%3B NAGB_BACSU GLUCOSAMINE-6-PHOSPHATE ISOMERASE%3B E%3D6e-43 swissprot:O97440%3B GNP2_GIALA GLUCOSAMINE-6-PHOSPHATE ISOMERASE 2%3B E%3D6e-41 COG: BS_ybfT%3B COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate%3B E%3D2e-45 PFAM: PF01182%3B Glucosamine-6-phosphate isome%3B E%3D3.7e-76 gene gene1810 http://www.ncbi.nlm.nih.gov/gene/?term=RB3340 RB3342 RB3342 RB3342 1715684 1716496 - hypothetical protein best DB hits: BLAST: gb:AAC14880.1%3B (AF060080) hypothetical protein [Chlorobium%3B E%3D8e-12 embl:CAA77139.1%3B (Y18353) hypothetical protein [Thermus%3B E%3D4e-09 pir:C75001%3B hypothetical protein PAB1341 - Pyrococcus abyssi (strain%3B E%3D4e-09 COG: PAB1341%3B COG2120 Uncharacterized proteins%2C LmbE homologs%3B E%3D4e-10 PFAM: PF02585%3B Uncharacterized LmbE-like protein%2C C%3B E%3D8.8e-12 gene gene1811 http://www.ncbi.nlm.nih.gov/gene/?term=RB3342 RB3345 RB3345 RB3345 1716741 1717643 + activator protein MtlR PMID: 9666063 best DB hits: BLAST: pir:G83352%3B transcriptional regulator MtlR PA2337 [imported] -%3B E%3D3e-30 gb:AAC34292.1%3B (AF047527) activator protein [Pseudomonas%3B E%3D2e-26 pir:G82221%3B transcriptional regulator AraCXylS family VC1260%3B E%3D2e-16 COG: PA2337%3B COG2207 AraC-type DNA-binding domain-containing proteins%3B E%3D3e-31 PFAM: PF00165%3B Bacterial regulatory helix-turn-heli%3B E%3D3.5e-21 gene gene1812 http://www.ncbi.nlm.nih.gov/gene/?term=RB3345 RB3346 RB3346 RB3346 1717654 1719357 - signal peptide best DB hits: PFAM: PF02369%3B Bacterial Ig-like domain (group 1)%3B E%3D0.48 gene gene1813 http://www.ncbi.nlm.nih.gov/gene/?term=RB3346 RB3348 RB3348 RB3348 1719459 1720634 - N-acylglucosamine 2-epimerase PMID: 1723410 PMID: 1400260 best DB hits: BLAST: pir:S75649%3B renin-binding protein-related protein - Synechocystis%3B E%3D1e-68 pdb:1FP3%3B A Chain A%2C Crystal Structure Of N-Acyl-D-Glucosamine%3B E%3D4e-54 swissprot:P51607%3B RNBP_RAT N-ACYLGLUCOSAMINE 2-EPIMERASE (GLCNAC%3B E%3D2e-53 COG: slr1975%3B COG2942 N-acyl-D-glucosamine 2-epimerase%3B E%3D1e-69 gene gene1814 http://www.ncbi.nlm.nih.gov/gene/?term=RB3348 RB3349 RB3349 RB3349 1720638 1723328 - sodium:solute symporter PMID: 8905231 best DB hits: BLAST: pir:S75887%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D4e-40 gb:AAF54633.1%3B (AE003691) CG6723 gene product [Drosophila%3B E%3D5e-32 swissprot:Q9XT77%3B SL56_RABIT SODIUM-DEPENDENT MULTIVITAMIN%3B E%3D6e-32 COG: sll1087%3B COG0591 Na+/proline%2C Na+/panthothenate symporters and%3B E%3D4e-41 RP571%3B COG0591 Na+/proline%2C Na+/panthothenate symporters and related%3B E%3D4e-13 BH2222%3B COG0591 Na+/proline%2C Na+/panthothenate symporters and%3B E%3D3e-12 PFAM: PF01344%3B Kelch motif%3B E%3D0.014 PF00474%3B Sodium:solute symporter family%3B E%3D1.5e-11 gene gene1815 http://www.ncbi.nlm.nih.gov/gene/?term=RB3349 RB335 RB335 RB335 168385 168642 - hypothetical protein gene gene189 http://www.ncbi.nlm.nih.gov/gene/?term=RB335 RB3352 RB3352 nanA nanA 1723325 1724293 - N-acetylneuraminate lyase PMID: 8081752 PMID: 3909108 PMID: 10952301 best DB hits: BLAST: pir:E82157%3B probable N-acetylneuraminate lyase VC1776 [imported] -%3B E%3D2e-39 embl:CAC27797.1%3B (AJ271330) acylneuraminate lyase [Sus scrofa]%3B E%3D7e-36 gb:AAG18989.1%3B (AE004999) dihydrodipicolinate synthase%3B DapA%3B E%3D2e-18 COG: VC1776%3B COG0329 Dihydrodipicolinate synthetase/N-acetylneuraminate%3B E%3D2e-40 PFAM: PF00701%3B Dihydrodipicolinate synthetase famil%3B E%3D2.7e-23 gene gene1816 http://www.ncbi.nlm.nih.gov/gene/?term=RB3352 RB3353 RB3353 RB3353 1724290 1725519 - sialidase [precursor] PMID: 1400240 PMID: 8591030 best DB hits: BLAST: swissprot:Q02834%3B NANH_MICVI SIALIDASE PRECURSOR (NEURAMINIDASE)%3B E%3D3e-40 pdb:1EUR%3B Sialidase ----- pdb: 1EUS Sialidase Complexed%3B E%3D3e-40 pdb:1EUU%3B Sialidase Or Neuraminidase%2C Large 68kd Form -----%3B E%3D3e-40 PFAM: PF02012%3B BNR repeat%3B E%3D0.1 gene gene1817 http://www.ncbi.nlm.nih.gov/gene/?term=RB3353 RB3354 RB3354 RB3354 1725578 1725703 + hypothetical protein gene gene1818 http://www.ncbi.nlm.nih.gov/gene/?term=RB3354 RB3355 RB3355 RB3355 1725716 1727881 + methylamine utilization protein mauG PMID: 8021188 best DB hits: BLAST: swissprot:Q50233%3B MAUG_METME METHYLAMINE UTILIZATION PROTEIN MAUG%3B E%3D2e-05 pir:B82367%3B cytochrome-c peroxidase (EC 1.11.1.5) VC0089%3B E%3D4e-05 swissprot:Q50426%3B MAUG_METFL METHYLAMINE UTILIZATION PROTEIN MAUG%3B E%3D1e-04 COG: VC0089%3B COG1858 Cytochrome c peroxidase%3B E%3D4e-06 gene gene1819 http://www.ncbi.nlm.nih.gov/gene/?term=RB3355 RB3358 RB3358 RB3358 1727856 1727969 - hypothetical protein gene gene1820 http://www.ncbi.nlm.nih.gov/gene/?term=RB3358 RB3359 RB3359 RB3359 1727941 1728156 - hypothetical protein gene gene1821 http://www.ncbi.nlm.nih.gov/gene/?term=RB3359 RB336 RB336 RB336 168676 169191 - hypothetical protein gene gene190 http://www.ncbi.nlm.nih.gov/gene/?term=RB336 RB3360 RB3360 RB3360 1727957 1728256 + hypothetical protein gene gene1822 http://www.ncbi.nlm.nih.gov/gene/?term=RB3360 RB3362 RB3362 RB3362 1728283 1728546 - hypothetical protein gene gene1823 http://www.ncbi.nlm.nih.gov/gene/?term=RB3362 RB3363 RB3363 RB3363 1728617 1730041 + transcriptional regulator fixJ PMID: 2000090 PMID: 8552028 best DB hits: BLAST: pir:S77202%3B sensory transduction histidine kinase sll1687 -%3B E%3D1e-09 swissprot:Q46791%3B YGEK_ECOLI HYPOTHETICAL TRANSCRIPTIONAL%3B E%3D5e-07 swissprot:P23221%3B FIXJ_BRAJA transcriptional regulator%3B E%3D5e-07 COG: sll1687_1%3B COG2202 PAS/PAC domain%3B E%3D1e-10 ygeK%3B COG2771 DNA-binding HTH domains%3B E%3D4e-08 sll0779_1%3B COG2202 PAS/PAC domain%3B E%3D2e-07 PFAM: PF00989%3B PAS domain%3B E%3D0.032 PF00785%3B PAC motif%3B E%3D4.6e-09 PF00196%3B Bacterial regulatory proteins%2C luxR%3B E%3D1.4e-19 gene gene1824 http://www.ncbi.nlm.nih.gov/gene/?term=RB3363 RB3365 RB3365 RB3365 1730124 1730255 + hypothetical protein gene gene1825 http://www.ncbi.nlm.nih.gov/gene/?term=RB3365 RB3366 RB3366 RB3366 1730380 1730616 + hypothetical protein gene gene1826 http://www.ncbi.nlm.nih.gov/gene/?term=RB3366 RB3367 RB3367 RB3367 1730753 1732018 - hypothetical protein PMID: 9537320 best DB hits: BLAST: pir:H70355%3B hypothetical protein aq_627 - Aquifex aeolicus -----%3B E%3D1e-09 ddbj:BAA09665.1%3B (D63341) XylN outer membrane protein%3B E%3D3e-09 ddbj:BAA12149.1%3B (D83955) outer membrane protein [Pseudomonas%3B E%3D1e-08 COG: aq_627%3B COG2067 Long-chain fatty acid transport protein%3B E%3D1e-10 gene gene1827 http://www.ncbi.nlm.nih.gov/gene/?term=RB3367 RB3369 RB3369 RB3369 1731972 1732190 + hypothetical protein gene gene1828 http://www.ncbi.nlm.nih.gov/gene/?term=RB3369 RB337 RB337 RB337 169241 169534 + hypothetical protein gene gene191 http://www.ncbi.nlm.nih.gov/gene/?term=RB337 RB3370 RB3370 RB3370 1732176 1732355 - hypothetical protein gene gene1829 http://www.ncbi.nlm.nih.gov/gene/?term=RB3370 RB3371 RB3371 RB3371 1732288 1733667 - hypothetical protein PMID: 9634230 best DB hits: BLAST: swissprot:Q10552%3B Y893_MYCTU HYPOTHETICAL 36.1 KDA PROTEIN RV0893C%3B E%3D3e-10 swissprot:Q50726%3B YX99_MYCTU HYPOTHETICAL 38.1 KDA PROTEIN RV3399%3B E%3D2e-08 pir:A70645%3B hypothetical protein Rv0726c - Mycobacterium%3B E%3D6e-08 COG: Rv0893c%3B COG3315 O-Methyltransferase involved in polyketide%3B E%3D3e-11 PFAM: PF02409%3B Domain of unknown function DUF142%3B E%3D7e-05 gene gene1830 http://www.ncbi.nlm.nih.gov/gene/?term=RB3371 RB3372 RB3372 RB3372 1733666 1734013 + hypothetical protein gene gene1831 http://www.ncbi.nlm.nih.gov/gene/?term=RB3372 RB3373 RB3373 RB3373 1734042 1740038 + receptor-like histidine kinase BpdS PMID: 9098081 best DB hits: BLAST: pir:T28655%3B receptor-like histidine kinase BpdS - Rhodococcus sp%3B E%3D1e-60 pir:T30898%3B receptor-like histidine kinase - Rhodococcus erythropolis%3B E%3D1e-60 pir:S75136%3B sensory transduction histidine kinase slr2104 -%3B E%3D9e-58 COG: VC1349_2%3B COG0642 Sensory transduction histidine kinases%3B E%3D1e-41 PFAM: PF00069%3B Protein kinase domain%3B E%3D8.1e-08 PF00515%3B TPR Domain%3B E%3D0.026 PF00512%3B His Kinase A (phosphoacceptor)%3B E%3D1.4e-21 gene gene1832 http://www.ncbi.nlm.nih.gov/gene/?term=RB3373 RB3374 RB3374 RB3374 1740063 1740350 - hypothetical protein gene gene1833 http://www.ncbi.nlm.nih.gov/gene/?term=RB3374 RB3375 RB3375 RB3375 1740070 1740198 - hypothetical protein gene gene1834 http://www.ncbi.nlm.nih.gov/gene/?term=RB3375 RB3376 RB3376 RB3376 1740244 1742316 + signal peptide PMID: 11474104 gene gene1835 http://www.ncbi.nlm.nih.gov/gene/?term=RB3376 RB3379 RB3379 RB3379 1742301 1745399 - hypothetical protein best DB hits: BLAST: ddbj:BAA91540.1%3B (AK001182) unnamed protein product [Homo sapiens]%3B E%3D8e-05 embl:CAB98267.1%3B (AJ276171) ASPIC [Homo sapiens]%3B E%3D2e-04 embl:CAB98268.1%3B (AJ276171) ASPIC [Homo sapiens] ----- embl:%3B E%3D2e-04 PFAM: PF00515%3B TPR Domain%3B E%3D1.9e-05 gene gene1836 http://www.ncbi.nlm.nih.gov/gene/?term=RB3379 RB3382 RB3382 RB3382 1745389 1748433 - hypothetical protein best DB hits: BLAST: pir:E69078%3B conserved hypothetical protein MTH1585 -%3B E%3D0.28 gene gene1837 http://www.ncbi.nlm.nih.gov/gene/?term=RB3382 RB3387 RB3387 RB3387 1748459 1748695 - hypothetical protein gene gene1838 http://www.ncbi.nlm.nih.gov/gene/?term=RB3387 RB3388 RB3388 RB3388 1748466 1751624 + hypothetical protein best DB hits: BLAST: ddbj:BAA91540.1%3B (AK001182) unnamed protein product [Homo sapiens]%3B E%3D4e-06 embl:CAB98267.1%3B (AJ276171) ASPIC [Homo sapiens]%3B E%3D9e-06 embl:CAB98268.1%3B (AJ276171) ASPIC [Homo sapiens] ----- embl:%3B E%3D9e-06 PFAM: PF02161%3B Progesterone receptor%3B E%3D0.75 PF01839%3B FG-GAP repeat%3B E%3D7.2e-05 gene gene1839 http://www.ncbi.nlm.nih.gov/gene/?term=RB3388 RB339 RB339 RB339 169531 169830 - hypothetical protein best DB hits: BLAST: swissprot:P72699%3B Y230_SYNY3 HYPOTHETICAL 13.3 KD PROTEIN SLL0230%3B E%3D9e-37 prf:2118405D%3B ORF YBL0105 [Saccharomyces cerevisiae]%3B E%3D8e-16 pir:D75018%3B hypothetical protein PAB1240 - Pyrococcus abyssi%3B E%3D1e-12 COG: sll0230%3B COG0011 Uncharacterized ACR%3B E%3D9e-38 PFAM: PF01910%3B Protein of unknown function DUF77%3B E%3D3.4e-51 gene gene192 http://www.ncbi.nlm.nih.gov/gene/?term=RB339 RB3391 RB3391 RB3391 1751636 1751875 - hypothetical protein gene gene1840 http://www.ncbi.nlm.nih.gov/gene/?term=RB3391 RB3393 RB3393 RB3393 1751865 1752047 + hypothetical protein gene gene1841 http://www.ncbi.nlm.nih.gov/gene/?term=RB3393 RB3394 RB3394 RB3394 1752044 1752154 + hypothetical protein gene gene1842 http://www.ncbi.nlm.nih.gov/gene/?term=RB3394 RB3395 RB3395 RB3395 1752151 1753347 + hypothetical protein best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene1843 http://www.ncbi.nlm.nih.gov/gene/?term=RB3395 RB3398 RB3398 RB3398 1753293 1753496 + hypothetical protein gene gene1844 http://www.ncbi.nlm.nih.gov/gene/?term=RB3398 RB3399 RB3399 RB3399 1753453 1753650 - hypothetical protein gene gene1845 http://www.ncbi.nlm.nih.gov/gene/?term=RB3399 RB34 RB34 RB34 15692 16483 - hypothetical protein gene gene17 http://www.ncbi.nlm.nih.gov/gene/?term=RB34 RB3400 RB3400 RB3400 1753777 1755018 + signal peptide best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene1846 http://www.ncbi.nlm.nih.gov/gene/?term=RB3400 RB3402 RB3402 RB3402 1755143 1755343 + hypothetical protein PMID: 9634230 best DB hits: BLAST: pir:G70688%3B probable lppV protein - Mycobacterium tuberculosis%3B E%3D0.019 gene gene1847 http://www.ncbi.nlm.nih.gov/gene/?term=RB3402 RB3403 RB3403 RB3403 1755417 1756892 - N-acetylgalactosamine 6-sulfatase (GALNS) PMID: 8020961 best DB hits: BLAST: ddbj:BAA04535.1%3B (D17629) N-acetylgalactosamine 6-sulfate%3B E%3D8e-37 pir:S07089%3B arylsulfatase (EC 3.1.6.1) - sea urchin (Lytechinus%3B E%3D3e-34 embl:CAA34667.1%3B (X16679) arylsulfatase [Hemicentrotus%3B E%3D3e-34 COG: aslA%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D1e-16 PFAM: PF00884%3B Sulfatase%3B E%3D6.6e-42 gene gene1848 http://www.ncbi.nlm.nih.gov/gene/?term=RB3403 RB3404 RB3404 RB3404 1756954 1757106 - hypothetical protein gene gene1849 http://www.ncbi.nlm.nih.gov/gene/?term=RB3404 RB3405 RB3405 RB3405 1757152 1759455 - hydrolase PMID: 8843436 PMID: 1850729 best DB hits: BLAST: embl:CAB61926.1%3B (AL133278) hydrolase [Streptomyces%3B E%3D1e-109 embl:CAB95281.1%3B (AL359779) hydrolase [Streptomyces%3B E%3D4e-58 pir:A39405%3B beta-galactosidase (EC 3.2.1.23) - Clostridium%3B E%3D3e-19 COG: BH2723%3B COG3250 Beta-galactosidase/beta-glucuronidase%3B E%3D1e-18 PFAM: PF02837%3B Glycosyl hydrolases family 2%2C%3B E%3D1.3e-05 PF00703%3B Glycosyl hydrolases family 2%2C%3B E%3D7.2e-13 gene gene1850 http://www.ncbi.nlm.nih.gov/gene/?term=RB3405 RB3406 RB3406 RB3406 1759455 1759589 + hypothetical protein gene gene1851 http://www.ncbi.nlm.nih.gov/gene/?term=RB3406 RB3407 RB3407 RB3407 1759666 1759935 - hypothetical protein gene gene1852 http://www.ncbi.nlm.nih.gov/gene/?term=RB3407 RB3408 RB3408 RB3408 1759897 1760439 + hypothetical protein PMID: 11259647 best DB hits: PFAM: PF02627%3B Carboxymuconolactone decarbox%3B E%3D0.33 gene gene1853 http://www.ncbi.nlm.nih.gov/gene/?term=RB3408 RB341 RB341 RB341 169852 170124 + hypothetical protein gene gene193 http://www.ncbi.nlm.nih.gov/gene/?term=RB341 RB3410 RB3410 RB3410 1760441 1761265 + hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:E83259%3B hypothetical protein PA3089 [imported] - Pseudomonas%3B E%3D8e-10 pir:D82119%3B hypothetical protein VC2094 [imported] - Vibrio cholerae%3B E%3D1e-05 PFAM: PF01110%3B Ciliary neurotrophic factor%3B E%3D0.62 gene gene1854 http://www.ncbi.nlm.nih.gov/gene/?term=RB3410 RB3413 RB3413 RB3413 1761281 1762402 - lipase/esterase PMID: 10567266 best DB hits: BLAST: pir:B75555%3B probable lipaseesterase - Deinococcus radiodurans%3B E%3D5e-28 pir:B70961%3B probable esterase - Mycobacterium tuberculosis (strain%3B E%3D2e-19 pir:H70731%3B probable esterase - Mycobacterium tuberculosis (strain%3B E%3D2e-18 COG: DR0133%3B COG0657 Acetyl esterase%3B E%3D5e-29 Rv2045c%3B COG2272 Carboxylesterase type B%3B E%3D7e-08 XF1253%3B COG0657 Acetyl esterase%3B E%3D3e-07 PFAM: PF00036%3B EF hand%3B E%3D0.0067 PF00135%3B Carboxylesterase%3B E%3D0.55 PF00326%3B Prolyl oligopeptidase%3B E%3D0.18 gene gene1855 http://www.ncbi.nlm.nih.gov/gene/?term=RB3413 RB3416 RB3416 RB3416 1762399 1762518 - hypothetical protein gene gene1856 http://www.ncbi.nlm.nih.gov/gene/?term=RB3416 RB3417 RB3417 RB3417 1762528 1763589 - pectate lyase PMID: 10198006 best DB hits: BLAST: gb:AAD25394.1%3B (AF121904) pectate lyase [Azospirillum irakense]%3B E%3D7e-51 ddbj:BAA81752.1%3B (AB028877) pectate lyase E [Bacillus sp.%3B E%3D3e-49 gb:AAG29353.1%3B AF279264_1 (AF279264) pectate lyase [Pseudomonas%3B E%3D2e-48 gene gene1857 http://www.ncbi.nlm.nih.gov/gene/?term=RB3417 RB3418 RB3418 RB3418 1763596 1764237 - hypothetical protein PMID: 8843436 best DB hits: BLAST: pir:C70555%3B hypothetical protein Rv1154c - Mycobacterium%3B E%3D0.003 gene gene1858 http://www.ncbi.nlm.nih.gov/gene/?term=RB3418 RB342 RB342 fkpA fkpA 170094 170666 + FKBP-type peptidylprolyl isomerase PMID: 8703024 best DB hits: BLAST: swissprot:O08437%3B FKBA_AERHY FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS%3B E%3D4e-22 pir:H83238%3B probable peptidyl-prolyl cis-trans isomerase%2C FkbP-type%3B E%3D2e-21 pir:D82331%3B peptidyl-prolyl cis-trans isomerase%2C FKBP-type VC0354%3B E%3D2e-21 COG: PA3262%3B COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1%3B E%3D2e-22 PFAM: PF00254%3B FKBP-type peptidyl-prolyl cis-trans%3B E%3D1.3e-29 gene gene194 http://www.ncbi.nlm.nih.gov/gene/?term=RB342 RB3421 RB3421 agrA agrA 1764206 1766641 - beta-agarase PMID: 11722934 best DB hits: BLAST: swissprot:P13734%3B AGAR_ALTAT BETA-AGARASE PRECURSOR ----- pir:%3B E%3D1e-10 gene gene1859 http://www.ncbi.nlm.nih.gov/gene/?term=RB3421 RB3422 RB3422 RB3422 1766641 1766769 + hypothetical protein gene gene1860 http://www.ncbi.nlm.nih.gov/gene/?term=RB3422 RB3423 RB3423 aceF aceF 1766791 1768200 - pyruvate dehydrogenase%2C E2 component%2C dihydrolipoamide acetyltransferase PMID: 6345153 PMID: 6821375 PMID: 2121129 best DB hits: BLAST: pir:C82079%3B pyruvate dehydrogenase%2C E2 component%2C dihydrolipoamide%3B E%3D4e-55 pir:H75540%3B pyruvate dehydrogenase complex%2C dihydrolipoamide%3B E%3D4e-55 gb:AAK02978.1%3B (AE006128) AceF [Pasteurella multocida]%3B E%3D6e-54 COG: VC2413%3B COG0508 Dihydrolipoamide acyltransferases%3B E%3D3e-56 PFAM: PF00364%3B Biotin-requiring enzyme%3B E%3D2.1e-20 PF02817%3B e3 binding domain%3B E%3D8.5e-14 PF00198%3B 2-oxo acid dehydrogenases acylt%3B E%3D8.5e-100 gene gene1861 http://www.ncbi.nlm.nih.gov/gene/?term=RB3423 RB3424 RB3424 aceE aceE 1768339 1771071 - pyruvate dehydrogenase subunit E1 E1 component%3B part of pyruvate dehydrogenase%3B forms a complex with DlaT and LpdC gene gene1862 http://www.ncbi.nlm.nih.gov/gene/?term=RB3424 RB3426 RB3426 RB3426 1771404 1771622 + hypothetical protein gene gene1863 http://www.ncbi.nlm.nih.gov/gene/?term=RB3426 RB3427 RB3427 dcd dcd 1771559 1772155 - deoxycytidine triphosphate deaminase Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis gene gene1864 http://www.ncbi.nlm.nih.gov/gene/?term=RB3427 RB3429 RB3429 RB3429 1772192 1772629 - hypothetical protein gene gene1865 http://www.ncbi.nlm.nih.gov/gene/?term=RB3429 RB343 RB343 RB343 170782 171516 - hypothetical protein PMID: 8572946 best DB hits: BLAST: gb:AAA96808.1%3B (L41843) ORF910%3B [Bacteriophage mv4]%3B E%3D0.002 gene gene195 http://www.ncbi.nlm.nih.gov/gene/?term=RB343 RB3430 RB3430 RB3430 1772646 1773392 + hypothetical protein PMID: 11677609 best DB hits: BLAST: gb:AAC61875.1%3B (M59935) unknown [Aspergillus nidulans]%3B E%3D0.062 pir:T41414%3B probable receptor-associated protein - fission yeast%3B E%3D0.23 gene gene1866 http://www.ncbi.nlm.nih.gov/gene/?term=RB3430 RB3431 RB3431 lon lon 1773397 1774179 + ATP-dependent protease La 1 PMID: 7961402 PMID: 8969504 PMID: 9384377 best DB hits: BLAST: pir:S76379%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D2e-05 swissprot:P37945%3B LON1_BACSU ATP-DEPENDENT PROTEASE LA 1 -----%3B E%3D8e-05 swissprot:O66605%3B LON_AQUAE ATP-DEPENDENT PROTEASE LA -----%3B E%3D1e-04 COG: sll0195%3B COG2802 Uncharacterized protein%2C similar to the N-terminal%3B E%3D2e-06 BS_lonA%3B COG0466 ATP-dependent Lon protease%2C bacterial type%3B E%3D8e-06 PFAM: PF02190%3B ATP-dependent protease La (LON)%3B E%3D8.3e-08 gene gene1867 http://www.ncbi.nlm.nih.gov/gene/?term=RB3431 RB3433 RB3433 RB3433 1774499 1774966 + methylated-DNA-protein-cysteine methyltransferase PMID: 9278503 best DB hits: BLAST: swissprot:P75707%3B YBAZ_ECOLI HYPOTHETICAL 14.4 KD PROTEIN IN%3B E%3D1e-04 gb:AAG54804.1%3B AE005224_9 (AE005224) orf%2C hypothetical protein%3B E%3D2e-04 embl:CAC16996.1%3B (AL450350) conserved hypothetical protein%3B E%3D3e-04 COG: ybaZ%3B COG0350 Methylated DNA-protein cysteine methyltransferase%3B E%3D1e-05 PFAM: PF01035%3B 6-O-methylguanine DNA methyltr%3B E%3D8.4e-05 gene gene1868 http://www.ncbi.nlm.nih.gov/gene/?term=RB3433 RB3435 RB3435 RB3435 1775030 1776091 - hypothetical protein PMID: 10086841 best DB hits: BLAST: ddbj:BAB05303.1%3B (AP001512) BH1584~~unknown conserved protein in%3B E%3D1e-18 pir:T34720%3B probable lipoprotein - Streptomyces coelicolor -----%3B E%3D2e-05 pir:T27110%3B hypothetical protein Y52B11B.2 - Caenorhabditis elegans%3B E%3D6e-04 gene gene1869 http://www.ncbi.nlm.nih.gov/gene/?term=RB3435 RB3436 RB3436 RB3436 1776194 1776367 + hypothetical protein gene gene1870 http://www.ncbi.nlm.nih.gov/gene/?term=RB3436 RB3437 RB3437 RB3437 1776314 1777639 - signal peptide best DB hits: PFAM: PF01034%3B Syndecan domain%3B E%3D0.87 gene gene1871 http://www.ncbi.nlm.nih.gov/gene/?term=RB3437 RB344 RB344 RB344 171693 173795 - xanthan lyase PMID: 11157235 PMID: 10966413 best DB hits: BLAST: ddbj:BAB21059.1%3B (AB037178) xanthan lyase [Bacillus sp. GL1]%3B E%3D3e-13 gb:AAG24953.1%3B AF242413_1 (AF242413) XalA [Paenibacillus%3B E%3D2e-10 gb:AAG42262.1%3B AF318176_1 (AF318176) xanthan lyase XalB%3B E%3D0.050 PFAM: PF00070%3B Pyridine nucleotide-disulphide%3B E%3D0.00077 gene gene196 http://www.ncbi.nlm.nih.gov/gene/?term=RB344 RB3440 RB3440 RB3440 1777782 1779092 + hypothetical protein gene gene1872 http://www.ncbi.nlm.nih.gov/gene/?term=RB3440 RB3441 RB3441 RB3441 1779073 1779219 + hypothetical protein gene gene1873 http://www.ncbi.nlm.nih.gov/gene/?term=RB3441 RB3442 RB3442 RB3442 1779212 1780636 - dehydrogenase PMID: 10086841 best DB hits: BLAST: ddbj:BAB05939.1%3B (AP001514) dehydrogenase [Bacillus halodurans]%3B E%3D1e-08 pir:B72359%3B lipopolysaccharide biosynthesis protein BplA -%3B E%3D2e-07 pir:D71201%3B hypothetical protein PH1881 - Pyrococcus horikoshii%3B E%3D5e-07 COG: BH2220%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D1e-09 PFAM: PF01408%3B Oxidoreductase%2C NAD-bindi%3B E%3D1.2e-14 gene gene1874 http://www.ncbi.nlm.nih.gov/gene/?term=RB3442 RB3446 RB3446 RB3446 1780781 1782316 - peptidyl-prolyl cis-trans isomerase cyp2 PMID: 11859360 best DB hits: BLAST: swissprot:P87051%3B YDJ3_SCHPO PROBABLE PEPTIDYL-PROLYL CIS-TRANS%3B E%3D5e-16 pir:H82708%3B peptidyl-prolyl cis-trans isomerase XF1212 [imported] -%3B E%3D9e-16 pir:H69044%3B peptidylprolyl isomerase (EC 5.2.1.8) MTH1338%3B E%3D2e-14 COG: XF1212%3B COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) -%3B E%3D9e-17 PFAM: PF00160%3B Cyclophilin type peptidyl-proly%3B E%3D1.9e-05 gene gene1875 http://www.ncbi.nlm.nih.gov/gene/?term=RB3446 RB3449 RB3449 RB3449 1782317 1782475 - hypothetical protein gene gene1876 http://www.ncbi.nlm.nih.gov/gene/?term=RB3449 RB3450 RB3450 RB3450 1782358 1782543 - hypothetical protein gene gene1877 http://www.ncbi.nlm.nih.gov/gene/?term=RB3450 RB3451 RB3451 ispF ispF 1782522 1783022 + 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase PMID: 10694574 best DB hits: BLAST: swissprot:P44815%3B ISPF_HAEIN 2C-METHYL-D-ERYTHRITOL%3B E%3D6e-36 gb:AAF65155.1%3B AF250236_1 (AF250236) 2C-methyl-D-erythritol%3B E%3D3e-34 gb:AAG52445.1%3B AC010852_2 (AC010852) unknown protein%3B 376-1789%3B E%3D5e-34 COG: HI0671%3B COG0245 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase%3B E%3D6e-37 BS_yacN%3B COG0245 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate%3B E%3D4e-31 VC0529%3B COG0245 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase%3B E%3D1e-30 PFAM: PF02542%3B YgbB family%3B E%3D9.6e-63 gene gene1878 http://www.ncbi.nlm.nih.gov/gene/?term=RB3451 RB3453 RB3453 fliD fliD 1783051 1785432 - lateral flagellar hook-associated protein 2 PMID: 8501040 best DB hits: BLAST: swissprot:Q03475%3B LAFB_VIBPA FLAGELLAR HOOK-ASSOCIATED PROTEIN 2%3B E%3D4e-12 pir:H72292%3B hypothetical protein TM1123 - Thermotoga maritima%3B E%3D6e-11 gb:AAF19182.1%3B AF198617_6 (AF198617) FlaH [Aeromonas caviae]%3B E%3D2e-09 COG: TM1123%3B COG1345 Flagellar capping protein%3B E%3D6e-12 PFAM: PF02465%3B Flagellar hook-associated protein 2%3B E%3D0.031 gene gene1879 http://www.ncbi.nlm.nih.gov/gene/?term=RB3453 RB3455 RB3455 RB3455 1785458 1785631 + hypothetical protein gene gene1880 http://www.ncbi.nlm.nih.gov/gene/?term=RB3455 RB3456 RB3456 RB3456 1785628 1785972 - hypothetical protein gene gene1881 http://www.ncbi.nlm.nih.gov/gene/?term=RB3456 RB3459 RB3459 RB3459 1786015 1786476 - signal peptide gene gene1882 http://www.ncbi.nlm.nih.gov/gene/?term=RB3459 RB3462 RB3462 RB3462 1786494 1787042 - signal peptide gene gene1883 http://www.ncbi.nlm.nih.gov/gene/?term=RB3462 RB3464 RB3464 RB3464 1786989 1787240 + hypothetical protein gene gene1884 http://www.ncbi.nlm.nih.gov/gene/?term=RB3464 RB3465 RB3465 gyrA gyrA 1787376 1789853 + DNA gyrase subunit A PMID: 7642123 best DB hits: BLAST: swissprot:P41513%3B GYRA_ERWCA DNA GYRASE SUBUNIT A ----- pir:%3B E%3D1e-105 gb:AAB95117.1%3B (U56906) DNA gyrase [Serratia marcescens]%3B E%3D1e-105 swissprot:P48372%3B GYRA_PSEAE DNA GYRASE SUBUNIT A ----- pir:%3B E%3D1e-104 COG: PA3168%3B COG0188 DNA gyrase (topoisomerase II) A subunit%3B E%3D1e-105 PFAM: PF00521%3B DNA gyrase/topoisomerase IV%2C su%3B E%3D2.9e-225 gene gene1885 http://www.ncbi.nlm.nih.gov/gene/?term=RB3465 RB3466 RB3466 gyrB gyrB 1789942 1791855 + DNA gyrase subunit B PMID: 8863738 best DB hits: BLAST: pir:JC4960%3B DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) B -%3B E%3D1e-140 swissprot:P77993%3B GYRB_THEMA DNA GYRASE SUBUNIT B (TOPOISOMERASE%3B E%3D1e-140 gb:AAG21374.1%3B AF288224_1 (AF288224) DNA Gyrase B subunit%3B E%3D1e-136 COG: TM0833%3B COG0187 DNA gyrase (topoisomerase II) B subunit%3B E%3D1e-141 PFAM: PF02518%3B Histidine kinase-%2C DNA gyrase B%3B E%3D2.1e-26 PF00204%3B DNA topoisomerase II (N-termina%3B E%3D1.3e-54 PF01751%3B Toprim domain%3B E%3D2.9e-10 gene gene1886 http://www.ncbi.nlm.nih.gov/gene/?term=RB3466 RB3467 RB3467 RB3467 1791998 1792615 - hypothetical protein gene gene1887 http://www.ncbi.nlm.nih.gov/gene/?term=RB3467 RB3468 RB3468 RB3468 1792382 1793407 + transposase best DB hits: BLAST: gb:AAC09305.1%3B (AF047044) transposase [Nostoc sp. PCC%3B E%3D2e-41 pir:A32816%3B hypothetical protein%2C 33K - Pseudomonas atlantica%3B E%3D7e-35 pir:B81886%3B probable transposase NMA1185 [imported] - Neisseria%3B E%3D1e-30 PFAM: PF01548%3B Transposase%3B E%3D2.2e-05 PF02371%3B Transposase IS116/IS110/IS902%3B E%3D1.3e-25 gene gene1888 http://www.ncbi.nlm.nih.gov/gene/?term=RB3468 RB347 RB347 RB347 173846 174388 - (2Fe-2S) ferredoxin PMID: 791660310884354 best DB hits: BLAST: pir:S75307%3B ferredoxin [2Fe-2S] sll1584 [similarity] - Synechocystis%3B E%3D2e-29 swissprot:O66511%3B FER2_AQUAE FERREDOXIN%2C 2FE-2S (AAFD4) -----%3B E%3D3e-08 pdb:1F37%3B A Chain A%2C Structure Of A Thioredoxin-Like [2fe-2s]%3B E%3D3e-08 COG: sll1584%3B COG3411 Uncharacterized protein%3B E%3D2e-30 TM0010_1%3B COG1894 NADH:ubiquinone oxidoreductase%2C NADH-binding (51%3B E%3D8e-09 aq_108a%3B COG3411 Uncharacterized protein%3B E%3D8e-09 gene gene197 http://www.ncbi.nlm.nih.gov/gene/?term=RB347 RB3471 RB3471 RB3471 1793823 1794386 - shikimate kinase II PMID: 3026317 PMID: 3001025 PMID: 9278503 best DB hits: BLAST: swissprot:P08329%3B AROL_ECOLI SHIKIMATE KINASE II (SKII) -----%3B E%3D2e-22 swissprot:P34003%3B AROK_PSEAE SHIKIMATE KINASE (SK) ----- pir:%3B E%3D4e-20 swissprot:P72796%3B AROK_SYNY3 SHIKIMATE KINASE (SK) ----- pir:%3B E%3D4e-20 COG: aroL%3B COG0703 Shikimate kinase%3B E%3D2e-23 PFAM: PF01583%3B Adenylylsulfate kinase%3B E%3D0.014 PF00005%3B ABC transporter%3B E%3D0.059 PF00910%3B RNA helicase%3B E%3D0.016 gene gene1889 http://www.ncbi.nlm.nih.gov/gene/?term=RB3471 RB3473 RB3473 RB3473 1794413 1795744 + hypothetical protein gene gene1890 http://www.ncbi.nlm.nih.gov/gene/?term=RB3473 RB3476 RB3476 RB3476 1795880 1796875 + hypothetical protein PMID: 8688087 best DB hits: BLAST: swissprot:Q58408%3B YA02_METJA HYPOTHETICAL PROTEIN MJ1002 -----%3B E%3D4e-23 pir:F75071%3B hypothetical protein PAB1730 - Pyrococcus abyssi (strain%3B E%3D3e-22 pir:B71094%3B hypothetical protein PH1015 - Pyrococcus horikoshii%3B E%3D2e-21 COG: MJ1002%3B COG1624 Uncharacterized ACR%3B E%3D4e-24 PFAM: PF02457%3B Domain of unknown function DUF147%3B E%3D1.2e-26 gene gene1891 http://www.ncbi.nlm.nih.gov/gene/?term=RB3476 RB3478 RB3478 map map 1797074 1797871 - methionine aminopeptidase PMID: 3027045 PMID: 8471602 PMID: 10387007 PMID: 10555963 PMID: 8202364 best DB hits: BLAST: swissprot:P53579%3B AMP1_SYNY3 METHIONINE AMINOPEPTIDASE A%3B E%3D3e-57 swissprot:P07906%3B AMPM_ECOLI METHIONINE AMINOPEPTIDASE (MAP)%3B E%3D1e-55 swissprot:P10882%3B AMPM_SALTY METHIONINE AMINOPEPTIDASE (MAP)%3B E%3D2e-55 COG: slr0918%3B COG0024 Methionine aminopeptidase%3B E%3D3e-58 PFAM: PF00557%3B metallopeptidase M24%3B E%3D9.9e-60 gene gene1892 http://www.ncbi.nlm.nih.gov/gene/?term=RB3478 RB3479 RB3479 RB3479 1797880 1801143 + general secretory pathway protein PMID: 11254562 best DB hits: PFAM: PF00263%3B Bacterial type II and III secretion%3B E%3D0.021 gene gene1893 http://www.ncbi.nlm.nih.gov/gene/?term=RB3479 RB348 RB348 RB348 174256 175818 - arylsulfatase PMID: 2303452 best DB hits: BLAST: gb:AAF49287.1%3B (AE003522) CG7402 gene product [Drosophila%3B E%3D4e-41 gb:AAF30402.1%3B AF109924_1 (AF109924) sulfatase 1 precursor [Helix%3B E%3D2e-39 swissprot:P15848%3B ARSB_HUMAN ARYLSULFATASE B PRECURSOR (ASB)%3B E%3D6e-38 COG: ydeN%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D2e-36 PFAM: PF00884%3B Sulfatase%3B E%3D1.4e-48 gene gene198 http://www.ncbi.nlm.nih.gov/gene/?term=RB348 RB3482 RB3482 RB3482 1801140 1802831 + general secretion pathway protein E PMID: 1944223 best DB hits: BLAST: pir:D82672%3B general secretory pathway protein E XF1517 [imported] -%3B E%3D1e-114 swissprot:P31742%3B GSPE_XANCP GENERAL SECRETION PATHWAY PROTEIN E%3B E%3D1e-110 pir:T12056%3B xpsE protein - Xanthomonas campestris pv. campestris%3B E%3D1e-110 COG: XF1517%3B COG2804 Predicted ATPases involved in pili biogenesis%2C PilB%3B E%3D1e-115 PFAM: PF00004%3B ATPase associated with variou%3B E%3D0.13 PF00448%3B SRP54-type protein%2C GTPase domain%3B E%3D0.038 PF00437%3B Bacterial type II secretion system p%3B E%3D8.8e-156 gene gene1894 http://www.ncbi.nlm.nih.gov/gene/?term=RB3482 RB3484 RB3484 RB3484 1802913 1804127 + type 4 fimbrial assembly protein pilC PMID: 1971619 PMID: 10984043 best DB hits: BLAST: pir:A75344%3B pilin biogenesis protein - Deinococcus radiodurans%3B E%3D4e-52 swissprot:P22609%3B PILC_PSEAE FIMBRIAL ASSEMBLY PROTEIN PILC%3B E%3D3e-48 pir:F82546%3B fimbrial assembly protein XF2538 [imported] - Xylella%3B E%3D3e-47 COG: DR1863%3B COG1459 General secretory pathway protein F%3B E%3D4e-53 PFAM: PF01961%3B Integral membrane protein DUF110%3B E%3D0.0065 PF00482%3B Bacterial type II secretion system p%3B E%3D5.1e-83 gene gene1895 http://www.ncbi.nlm.nih.gov/gene/?term=RB3484 RB3485 RB3485 RB3485 1804092 1804241 - hypothetical protein gene gene1896 http://www.ncbi.nlm.nih.gov/gene/?term=RB3485 RB3487 RB3487 melR melR 1804252 1805121 - melibiose operon regulatory protein PMID: 2830169 PMID: 2684786 PMID: 1445207 PMID: 9108148 best DB hits: BLAST: gb:AAC24510.1%3B (AF049243) regulatory protein [Mesorhizobium loti]%3B E%3D2e-25 swissprot:P10411%3B MELR_ECOLI MELIBIOSE OPERON REGULATORY PROTEIN%3B E%3D5e-23 ddbj:BAB20427.1%3B (AB053204) melibiose operon regulatory protein%3B E%3D7e-23 COG: melR%3B COG2207 AraC-type DNA-binding domain-containing proteins%3B E%3D5e-24 BS_adaA%3B COG2169 Adenosine deaminase%3B E%3D1e-07 VC1260%3B COG2207 AraC-type DNA-binding domain-containing proteins%3B E%3D1e-07 PFAM: PF00165%3B Bacterial regulatory helix-turn-heli%3B E%3D4.3e-24 gene gene1897 http://www.ncbi.nlm.nih.gov/gene/?term=RB3487 RB3488 RB3488 RB3488 1805258 1806502 + sorbitol dehydrogenase PMID: 1460002 PMID: 9384377 best DB hits: BLAST: swissprot:Q06004%3B DHSO_BACSU SORBITOL DEHYDROGENASE (L-IDITOL%3B E%3D1e-32 pir:G72376%3B alcohol dehydrogenase%2C zinc-containing - Thermotoga%3B E%3D2e-27 pir:H71110%3B probable dehydrogenase - Pyrococcus horikoshii -----%3B E%3D9e-25 COG: BS_gutB%3B COG1063 Threonine dehydrogenase and related Zn-dependent%3B E%3D1e-33 PFAM: PF00107%3B Zinc-binding dehydrogenases%3B E%3D2.2e-50 gene gene1898 http://www.ncbi.nlm.nih.gov/gene/?term=RB3488 RB3490 RB3490 RB3490 1806450 1806644 - hypothetical protein gene gene1899 http://www.ncbi.nlm.nih.gov/gene/?term=RB3490 RB3491 RB3491 rbsD rbsD 1806665 1807072 + D-ribose pyranase cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose%3B RbsD is required for efficient ribose utilization in E. coli%3B rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source gene gene1900 http://www.ncbi.nlm.nih.gov/gene/?term=RB3491 RB3493 RB3493 rbsB rbsB 1807097 1808104 + ribose ABC transporter%2C periplasmic ribose-binding protein rbsB PMID: 6313683 PMID: 3011793 PMID: 1583688 PMID: 7982928 best DB hits: BLAST: pir:C72311%3B ribose ABC transporter%2C periplasmic ribose-binding%3B E%3D7e-89 pir:C82497%3B ribose ABC transporter%2C periplasmic D-ribose-binding%3B E%3D1e-48 pir:JGEBRT%3B D-ribose-binding protein - Salmonella typhimurium%3B E%3D1e-47 COG: TM0958%3B COG1879 Periplasmic sugar-binding proteins%3B E%3D6e-90 BH3727%3B COG1609 Transcriptional regulators%3B E%3D5e-11 yphF%3B COG1879 Periplasmic sugar-binding proteins%3B E%3D1e-10 PFAM: PF00532%3B Periplasmic binding proteins%3B E%3D0.0014 PF00534%3B Glycosyl transferases group 1%3B E%3D0.11 PF00532%3B Periplasmic binding proteins%3B E%3D0.21 gene gene1901 http://www.ncbi.nlm.nih.gov/gene/?term=RB3493 RB3495 RB3495 RB3495 1808101 1808757 + hypothetical protein PMID: 10360571 best DB hits: BLAST: pir:F72314%3B hypothetical protein TM0957 - Thermotoga maritima%3B E%3D2e-09 gb:AAD37311.1%3B AF135170_2 (AF135170) unknown [Yersinia pestis]%3B E%3D0.22 gene gene1902 http://www.ncbi.nlm.nih.gov/gene/?term=RB3495 RB3496 RB3496 rbsA rbsA 1808754 1810289 + ribose ABC transporter ATP-binding protein rbsA PMID: 3011793 PMID: 3086314 PMID: 7686882 best DB hits: BLAST: pir:E72314%3B ribose ABC transporter ATP-binding protein - Thermotoga%3B E%3D1e-132 pir:A82497%3B ribose ABC transporter ATP-binding protein VCA0128%3B E%3D1e-110 swissprot:P04983%3B RBSA_ECOLI RIBOSE TRANSPORT ATP-BINDING PROTEIN%3B E%3D1e-109 COG: TM0956%3B COG1129 ABC-type sugar (aldose) transport system%2C ATPase%3B E%3D1e-133 PFAM: PF00005%3B ABC transporter%3B E%3D3.5e-55 gene gene1903 http://www.ncbi.nlm.nih.gov/gene/?term=RB3496 RB3497 RB3497 rbsC rbsC 1810283 1811254 + ribose transport system permease rbsC PMID: 7921236 PMID: 9384377 best DB hits: BLAST: pir:D72314%3B ribose ABC transporter%2C permease - Thermotoga%3B E%3D3e-57 pir:B69690%3B ribose ABC transporter (permease) rbsC - Bacillus%3B E%3D6e-41 pir:B82497%3B ribose ABC transporter%2C permease VCA0129%3B E%3D2e-40 COG: TM0955%3B COG1172 Ribose/xylose/arabinose/galactoside ABC-type%3B E%3D3e-58 rbsC%3B COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport%3B E%3D6e-35 TM0112%3B COG1172 Ribose/xylose/arabinose/galactoside ABC-type%3B E%3D9e-30 PFAM: PF02653%3B Branched-chain amino acid transp%3B E%3D3.8e-10 gene gene1904 http://www.ncbi.nlm.nih.gov/gene/?term=RB3497 RB3499 RB3499 rbsK rbsK 1811256 1812200 + ribokinase PMID: 3011794 best DB hits: BLAST: embl:CAC12877.1%3B (AJ404857) ribokinase [Homo sapiens]%3B E%3D1e-51 pir:B83403%3B ribokinase PA1950 [imported] - Pseudomonas aeruginosa%3B E%3D2e-50 swissprot:P44331%3B RBSK_HAEIN RIBOKINASE ----- pir: B64073%3B E%3D2e-48 COG: PA1950%3B COG0524 Sugar kinases%2C ribokinase%3B E%3D2e-51 PFAM: PF00294%3B pfkB family carbohydrate kinase%3B E%3D3.3e-74 gene gene1905 http://www.ncbi.nlm.nih.gov/gene/?term=RB3499 RB35 RB35 RB35 16591 17700 - hypothetical protein gene gene18 http://www.ncbi.nlm.nih.gov/gene/?term=RB35 RB3500 RB3500 RB3500 1812197 1813639 + signal peptide PMID: 11259647 best DB hits: PFAM: PF01819%3B Levivirus coat protein%3B E%3D0.45 PF00801%3B PKD domain%3B E%3D0.16 gene gene1906 http://www.ncbi.nlm.nih.gov/gene/?term=RB3500 RB3501 RB3501 RB3501 1813718 1815190 + signal peptide PMID: 11259647 gene gene1907 http://www.ncbi.nlm.nih.gov/gene/?term=RB3501 RB3504 RB3504 RB3504 1815121 1816584 + hypothetical protein PMID: 11259647 gene gene1908 http://www.ncbi.nlm.nih.gov/gene/?term=RB3504 RB3505 RB3505 RB3505 1816597 1816704 + hypothetical protein gene gene1909 http://www.ncbi.nlm.nih.gov/gene/?term=RB3505 RB3506 RB3506 RB3506 1816685 1816825 - hypothetical protein gene gene1910 http://www.ncbi.nlm.nih.gov/gene/?term=RB3506 RB3507 RB3507 RB3507 1816898 1817077 - hypothetical protein gene gene1911 http://www.ncbi.nlm.nih.gov/gene/?term=RB3507 RB3508 RB3508 galE2 galE2 1817046 1817927 + UDP-glucose 4-epimerase GalE2 best DB hits: BLAST: swissprot:P33119%3B GALE_CORDI UDP-GLUCOSE 4-EPIMERASE%3B E%3D2e-07 pir:A70392%3B UDP-glucose-4-epimerase - Aquifex aeolicus ----- gb:%3B E%3D2e-07 pir:C69149%3B conserved hypothetical protein MTH380 - Methanobacterium%3B E%3D2e-07 COG: VCA0774%3B COG1087 UDP-glucose 4-epimerase%3B E%3D7e-06 Cj1319%3B COG0451 Nucleoside-diphosphate-sugar epimerases%3B E%3D4e-06 MTH631%3B COG1087 UDP-glucose 4-epimerase%3B E%3D1e-06 PFAM: PF01370%3B NAD dependent epimerase/dehydratase%3B E%3D0.56 PF01073%3B 3-beta hydroxysteroid dehydrogenase%3B E%3D0.63 PF01370%3B NAD dependent epimerase/dehydratase%3B E%3D2.9e-05 gene gene1912 http://www.ncbi.nlm.nih.gov/gene/?term=RB3508 RB3509 RB3509 RB3509 1818015 1819025 + hypothetical protein best DB hits: BLAST: pir:T34929%3B hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces%3B E%3D1e-06 embl:CAB94634.1%3B (AL359215) secreted glycosyl hydrolase.%3B E%3D7e-04 pir:T35029%3B hypothetical protein SC4C6.21c - Streptomyces coelicolor%3B E%3D0.13 gene gene1913 http://www.ncbi.nlm.nih.gov/gene/?term=RB3509 RB3513 RB3513 RB3513 1819062 1820495 + signal peptide PMID: 11259647 best DB hits: BLAST: pir:G72720%3B probable oligopeptide-binding protein oppA APE0304 -%3B E%3D0.73 PFAM: PF00028%3B Cadherin domain%3B E%3D0.14 gene gene1914 http://www.ncbi.nlm.nih.gov/gene/?term=RB3513 RB3514 RB3514 RB3514 1820492 1821781 + signal peptide PMID: 11259647 gene gene1915 http://www.ncbi.nlm.nih.gov/gene/?term=RB3514 RB3517 RB3517 RB3517 1821890 1823275 + hypothetical protein gene gene1916 http://www.ncbi.nlm.nih.gov/gene/?term=RB3517 RB352 RB352 RB352 175963 177417 + arylsulfatase PMID: 7910580 PMID: 2303452 best DB hits: BLAST: ddbj:BAA04535.1%3B (D17629) N-acetylgalactosamine 6-sulfate%3B E%3D2e-32 gb:AAB03341.1%3B (U62317) arylsulfatase A [Homo sapiens]%3B E%3D5e-32 gb:AAA51779.1%3B (M32373) arylsulfatase B precursor [Homo sapiens]%3B E%3D7e-32 COG: PA0183%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D4e-21 PFAM: PF00884%3B Sulfatase%3B E%3D5.6e-75 gene gene199 http://www.ncbi.nlm.nih.gov/gene/?term=RB352 RB3521 RB3521 arsR arsR 1823417 1823743 + transcriptional regulator ArsR PMID: 8843436 best DB hits: BLAST: embl:CAB71255.1%3B (AL138598) ArsR-family transcriptional%3B E%3D2e-06 pir:S74901%3B arsenical resistance operon repressor - Synechocystis%3B E%3D9e-05 pir:D64465%3B hypothetical protein MJ1325 - Methanococcus jannaschii%3B E%3D1e-04 COG: sll1957%3B COG0640 Predicted transcriptional regulators%3B E%3D9e-06 PFAM: PF01022%3B Bacterial regulatory protein%2C arsR f%3B E%3D9.4e-13 gene gene1917 http://www.ncbi.nlm.nih.gov/gene/?term=RB3521 RB3522 RB3522 RB3522 1823744 1825345 + signal peptide gene gene1918 http://www.ncbi.nlm.nih.gov/gene/?term=RB3522 RB3524 RB3524 RB3524 1825364 1827214 - heme/hemopexin utilization protein huxB PMID: 7751272 best DB hits: BLAST: pir:C83558%3B hypothetical protein PA0692 [imported] - Pseudomonas%3B E%3D1e-15 swissprot:P45356%3B HXB2_HAEIN HEMEHEMOPEXIN UTILIZATION PROTEIN B%3B E%3D2e-05 swissprot:P44601%3B HXB1_HAEIN HEMEHEMOPEXIN UTILIZATION PROTEIN B%3B E%3D3e-05 COG: PA0692%3B COG2831 Hemolysin activation/secretion protein%3B E%3D1e-16 gene gene1919 http://www.ncbi.nlm.nih.gov/gene/?term=RB3524 RB3525 RB3525 RB3525 1827251 1827376 - hypothetical protein gene gene1920 http://www.ncbi.nlm.nih.gov/gene/?term=RB3525 RB3526 RB3526 RB3526 1827366 1827521 + hypothetical protein gene gene1921 http://www.ncbi.nlm.nih.gov/gene/?term=RB3526 RB3527 RB3527 RB3527 1827580 1840344 + heme/hemopexin utilization protein huxA PMID: 7815944 best DB hits: BLAST: pir:F83068%3B hypothetical protein PA4625 [imported] - Pseudomonas%3B E%3D5e-25 gb:AAA20524.1%3B (U08875) adhesin [Haemophilus influenzae]%3B E%3D1e-19 pir:B43855%3B high-molecular-weight surface-exposed protein -%3B E%3D2e-19 gene gene1922 http://www.ncbi.nlm.nih.gov/gene/?term=RB3527 RB3532 RB3532 RB3532 1840557 1841543 + alkaline phosphatase PMID: 11743194 best DB hits: BLAST: pir:S74570%3B alkaline phosphatase (EC 3.1.3.1) phoA - Synechocystis%3B E%3D0.002 pir:T05561%3B hypothetical protein F22K18.70 - Arabidopsis thaliana%3B E%3D0.24 embl:CAB08432.1%3B (Z95151) Icc [Mycobacterium leprae]%3B E%3D0.54 COG: sll0222%3B COG1409 Predicted phosphohydrolases%3B E%3D2e-04 PFAM: PF01425%3B Amidase%3B E%3D0.24 gene gene1923 http://www.ncbi.nlm.nih.gov/gene/?term=RB3532 RB3534 RB3534 RB3534 1841586 1844699 - hypothetical protein best DB hits: BLAST: ddbj:BAA91540.1%3B (AK001182) unnamed protein product [Homo sapiens]%3B E%3D1e-05 embl:CAB98267.1%3B (AJ276171) ASPIC [Homo sapiens]%3B E%3D4e-05 embl:CAB98268.1%3B (AJ276171) ASPIC [Homo sapiens] ----- embl:%3B E%3D4e-05 gene gene1924 http://www.ncbi.nlm.nih.gov/gene/?term=RB3534 RB3539 RB3539 RB3539 1844714 1844914 - hypothetical protein gene gene1925 http://www.ncbi.nlm.nih.gov/gene/?term=RB3539 RB354 RB354 RB354 177380 177535 - hypothetical protein gene gene200 http://www.ncbi.nlm.nih.gov/gene/?term=RB354 RB3542 RB3542 RB3542 1844996 1846228 - signal peptide best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene1926 http://www.ncbi.nlm.nih.gov/gene/?term=RB3542 RB3545 RB3545 RB3545 1846255 1846428 + hypothetical protein gene gene1927 http://www.ncbi.nlm.nih.gov/gene/?term=RB3545 RB3546 RB3546 RB3546 1846454 1846567 - hypothetical protein gene gene1928 http://www.ncbi.nlm.nih.gov/gene/?term=RB3546 RB3547 RB3547 RB3547 1846534 1846734 - hypothetical protein gene gene1929 http://www.ncbi.nlm.nih.gov/gene/?term=RB3547 RB3548 RB3548 RB3548 1846834 1847013 - hypothetical protein gene gene1930 http://www.ncbi.nlm.nih.gov/gene/?term=RB3548 RB3549 RB3549 RB3549 1847124 1848020 + lactose operon transcription activator PMID: 9573174 best DB hits: BLAST: ddbj:BAB05677.1%3B (AP001513) BH1958~~unknown conserved protein%3B E%3D1e-07 swissprot:O33813%3B LACR_STAXY LACTOSE OPERON TRANSCRIPTION%3B E%3D4e-07 ddbj:BAB07561.1%3B (AP001520) two-component response regulator%3B E%3D6e-07 COG: BH1958%3B COG2207 AraC-type DNA-binding domain-containing proteins%3B E%3D1e-08 BH0394%3B COG2169 Adenosine deaminase%3B E%3D2e-06 PA2337%3B COG2207 AraC-type DNA-binding domain-containing proteins%3B E%3D3e-06 PFAM: PF00165%3B Bacterial regulatory helix-turn-heli%3B E%3D3.7e-20 gene gene1931 http://www.ncbi.nlm.nih.gov/gene/?term=RB3549 RB3550 RB3550 RB3550 1848038 1848991 - endo-1%2C4-beta-xylanase B PMID: 1909424 best DB hits: BLAST: swissprot:P26223%3B XYNB_BUTFI ENDO-1%2C4-BETA-XYLANASE B (XYLANASE B)%3B E%3D2e-10 prf:1718306A%3B xylanase [Butyrivibrio fibrisolvens]%3B E%3D2e-10 gb:AAK04528.1%3B AE006280_4 (AE006280) sugar hydrolase [Lactococcus%3B E%3D4e-07 COG: DR0133%3B COG0657 Acetyl esterase%3B E%3D0.007 PFAM: PF01738%3B Dienelactone hydrolase%3B E%3D0.027 gene gene1932 http://www.ncbi.nlm.nih.gov/gene/?term=RB3550 RB3552 RB3552 RB3552 1849023 1849418 - hypothetical protein gene gene1933 http://www.ncbi.nlm.nih.gov/gene/?term=RB3552 RB3555 RB3555 glcK glcK 1849463 1850161 + glucokinase PMID: 9620975 best DB hits: BLAST: pir:T44787%3B glucokinase (EC 2.7.1.2) [imported] - Bacillus%3B E%3D5e-14 swissprot:Q44406%3B XYLR_ANATH XYLOSE REPRESSOR ----- embl:%3B E%3D5e-13 gb:AAK06121.1%3B AE006432_3 (AE006432) glucose kinase (EC 2.7.1.2)%3B E%3D6e-12 COG: BS_glcK%3B COG1940 Transcriptional regulators%3B E%3D6e-13 PFAM: PF00480%3B ROK family%3B E%3D3.2e-21 gene gene1934 http://www.ncbi.nlm.nih.gov/gene/?term=RB3555 RB3556 RB3556 gpi2 gpi2 1850205 1852118 + glucosamine-6-phosphate deaminase-like protein PMID: 3284790 best DB hits: BLAST: swissprot:O97440%3B GNP2_GIALA GLUCOSAMINE-6-PHOSPHATE ISOMERASE 2%3B E%3D1e-44 swissprot:O31458%3B YBFT_BACSU HYPOTHETICAL 27.3 KD PROTEIN IN%3B E%3D5e-44 swissprot:O35000%3B NAGB_BACSU GLUCOSAMINE-6-PHOSPHATE ISOMERASE%3B E%3D4e-43 COG: BS_ybfT%3B COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate%3B E%3D4e-45 DRA0063%3B COG2120 Uncharacterized proteins%2C LmbE homologs%3B E%3D0.002 PFAM: PF01182%3B Glucosamine-6-phosphate isome%3B E%3D2e-70 PF02585%3B Uncharacterized LmbE-like pro%3B E%3D3.6e-07 gene gene1935 http://www.ncbi.nlm.nih.gov/gene/?term=RB3556 RB3557 RB3557 RB3557 1852183 1852356 + hypothetical protein gene gene1936 http://www.ncbi.nlm.nih.gov/gene/?term=RB3557 RB3559 RB3559 RB3559 1852389 1852646 + hypothetical protein gene gene1937 http://www.ncbi.nlm.nih.gov/gene/?term=RB3559 RB356 RB356 RB356 177713 178822 + hypothetical protein gene gene201 http://www.ncbi.nlm.nih.gov/gene/?term=RB356 RB3562 RB3562 RB3562 1852643 1853119 + hypothetical protein gene gene1938 http://www.ncbi.nlm.nih.gov/gene/?term=RB3562 RB3564 RB3564 RB3564 1853116 1853673 + signal peptide gene gene1939 http://www.ncbi.nlm.nih.gov/gene/?term=RB3564 RB3565 RB3565 RB3565 1853670 1854083 + signal peptide gene gene1940 http://www.ncbi.nlm.nih.gov/gene/?term=RB3565 RB3566 RB3566 RB3566 1854080 1854274 + hypothetical protein gene gene1941 http://www.ncbi.nlm.nih.gov/gene/?term=RB3566 RB3567 RB3567 RB3567 1854181 1854339 + hypothetical protein gene gene1942 http://www.ncbi.nlm.nih.gov/gene/?term=RB3567 RB3568 RB3568 RB3568 1854195 1854353 - hypothetical protein gene gene1943 http://www.ncbi.nlm.nih.gov/gene/?term=RB3568 RB3569 RB3569 RB3569 1854357 1854728 - hypothetical protein PMID: 11759840 gene gene1944 http://www.ncbi.nlm.nih.gov/gene/?term=RB3569 RB357 RB357 ubiE ubiE 178844 179599 - ubiquinone/menaquinone biosynthesis methyltransferase PMID: 9045837 PMID: 9139683 best DB hits: BLAST: swissprot:O86169%3B MENH_BACST 2-HEPTAPRENYL-1%2C4-NAPHTHOQUINONE%3B E%3D1e-11 prf:2104259J%3B ORF 5 [Streptomyces peucetius]%3B E%3D3e-09 gb:AAG54506.1%3B AE005196_4 (AE005196) unknown [Escherichia coli%3B E%3D7e-08 COG: DR0026%3B COG0500 SAM-dependent methyltransferases%3B E%3D2e-07 PA5063%3B COG2226 Methylase involved in ubiquinone/menaquinone%3B E%3D3e-07 aq_262%3B COG0500 SAM-dependent methyltransferases%3B E%3D1e-05 PFAM: PF01209%3B ubiE/COQ5 methyltransferase f%3B E%3D0.0065 gene gene202 http://www.ncbi.nlm.nih.gov/gene/?term=RB357 RB3570 RB3570 RB3570 1854745 1855002 - hypothetical protein gene gene1945 http://www.ncbi.nlm.nih.gov/gene/?term=RB3570 RB3571 RB3571 RB3571 1855012 1858557 - TolB protein [precursor] PMID: 8921895 best DB hits: BLAST: swissprot:P44677%3B TOLB_HAEIN TOLB PROTEIN PRECURSOR ----- pir:%3B E%3D4e-04 pir:JC5213%3B tolB protein - Haemophilus influenzae ----- gb:%3B E%3D0.001 pir:F82625%3B TolB protein precursor XF1897 [imported] - Xylella%3B E%3D0.001 COG: HI0382%3B COG0823 Periplasmic component of the Tol biopolymer transport%3B E%3D4e-05 gene gene1946 http://www.ncbi.nlm.nih.gov/gene/?term=RB3571 RB3574 RB3574 RB3574 1858576 1858914 - hypothetical protein gene gene1947 http://www.ncbi.nlm.nih.gov/gene/?term=RB3574 RB3575 RB3575 RB3575 1858779 1859237 + hypothetical protein gene gene1948 http://www.ncbi.nlm.nih.gov/gene/?term=RB3575 RB3577 RB3577 RB3577 1859377 1859925 + signal peptide gene gene1949 http://www.ncbi.nlm.nih.gov/gene/?term=RB3577 RB3579 RB3579 RB3579 1859873 1860910 + hypothetical protein best DB hits: BLAST: pir:S75452%3B hypothetical protein slr1506 - Synechocystis sp. (strain%3B E%3D2e-09 pir:S76481%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D5e-09 ddbj:BAB04446.1%3B (AP001509) BH0727~~unknown conserved protein in%3B E%3D5e-08 gene gene1950 http://www.ncbi.nlm.nih.gov/gene/?term=RB3579 RB3582 RB3582 RB3582 1861026 1861430 + signal peptide gene gene1951 http://www.ncbi.nlm.nih.gov/gene/?term=RB3582 RB3583 RB3583 RB3583 1861424 1861582 - hypothetical protein gene gene1952 http://www.ncbi.nlm.nih.gov/gene/?term=RB3583 RB3584 RB3584 RB3584 1861605 1863539 + sodium/hydrogen antiporter PMID: 10952301 best DB hits: BLAST: pir:F82291%3B conserved hypothetical protein VC0689 [imported] -%3B E%3D4e-81 pir:G83177%3B probable sodiumhydrogen antiporter PA3739 [imported] -%3B E%3D3e-80 pir:S75742%3B hypothetical protein sll0556 - Synechocystis sp. (strain%3B E%3D1e-36 COG: VC0689_1%3B COG0025 NhaP-type Na+/H+ and K+/H+ antiporters%3B E%3D2e-58 PFAM: PF00999%3B Sodium/hydrogen exchanger fami%3B E%3D8.8e-35 PF00698%3B Acyl transferase domain%3B E%3D0.27 PF02254%3B KTN NAD-binding domain%3B E%3D0.0024 gene gene1953 http://www.ncbi.nlm.nih.gov/gene/?term=RB3584 RB3585 RB3585 RB3585 1863536 1864195 + hypothetical protein gene gene1954 http://www.ncbi.nlm.nih.gov/gene/?term=RB3585 RB3587 RB3587 RB3587 1864455 1864796 - hypothetical protein gene gene1955 http://www.ncbi.nlm.nih.gov/gene/?term=RB3587 RB3589 RB3589 RB3589 1864876 1866579 + exopolysaccharide biosynthesis protein best DB hits: BLAST: pir:G82262%3B probable exopolysaccharide biosynthesis protein VC0937%3B E%3D3e-06 pir:S67819%3B GumC protein - Xanthomonas campestris ----- gb:%3B E%3D3e-04 pir:D83367%3B hypothetical protein PA2235 [imported] - Pseudomonas%3B E%3D0.002 COG: PA2235%3B COG3206 Uncharacterized protein involved in%3B E%3D2e-04 PFAM: PF02706%3B Chain length determinant protein%3B E%3D0.23 gene gene1956 http://www.ncbi.nlm.nih.gov/gene/?term=RB3589 RB3591 RB3591 RB3591 1866735 1868054 + transferase PMID: 8843436 best DB hits: BLAST: embl:CAB58332.1%3B (AL121855) transferase [Streptomyces%3B E%3D9e-44 pir:D72511%3B probable hexosyltransferase (EC 2.4.1.-) APE2066%3B E%3D4e-12 pir:D69143%3B LPS biosynthesis RfbU related protein - Methanobacterium%3B E%3D4e-12 COG: APE2066%3B COG0438 Predicted glycosyltransferases%3B E%3D4e-13 PFAM: PF00534%3B Glycosyl transferases group 1%3B E%3D8e-32 gene gene1957 http://www.ncbi.nlm.nih.gov/gene/?term=RB3591 RB3593 RB3593 RB3593 1867948 1868775 + endo-1%2C4-beta-xylanase PMID: 9384377 best DB hits: BLAST: pir:G69849%3B endo-1%2C4-beta-xylanase homolog yjeA - Bacillus subtilis%3B E%3D6e-04 pir:A70081%3B conserved hypothetical protein yxkH - Bacillus subtilis%3B E%3D0.001 pir:A75376%3B probable oligosaccharide deacetylase - Deinococcus%3B E%3D0.003 COG: BS_yjeA_2%3B COG0726 Predicted xylanase/chitin deacetylase%3B E%3D6e-05 PFAM: PF01522%3B Polysaccharide deacetylase%3B E%3D0.0029 gene gene1958 http://www.ncbi.nlm.nih.gov/gene/?term=RB3593 RB3596 RB3596 nifU nifU 1868895 1869329 + nitrogen fixation protein NifU PMID: 11016950 best DB hits: BLAST: gb:AAG20546.1%3B (AE005125) nitrogen fixation protein%3B NifU%3B E%3D2e-22 ddbj:BAB07187.1%3B (AP001518) nitrogen fixation protein [Bacillus%3B E%3D4e-16 swissprot:Q9X192%3B NIFU_THEMA NIFU-LIKE PROTEIN ----- pir:%3B E%3D4e-15 COG: VNG2472G%3B COG0822 NifU homologs involved in Fe-S cluster formation%3B E%3D2e-23 PFAM: PF01592%3B NifU-like N terminal domain%3B E%3D1e-22 gene gene1959 http://www.ncbi.nlm.nih.gov/gene/?term=RB3596 RB3597 RB3597 RB3597 1869326 1870621 + NifS protein homolog yurW PMID: 9384377 PMID: 2644218 PMID: 3040672 PMID: 8464885 PMID: 8161529 best DB hits: BLAST: pir:T35993%3B probable aminotransferase - Streptomyces coelicolor%3B E%3D3e-98 pir:S76601%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D1e-97 pir:F70019%3B nifS protein homolog yurW - Bacillus subtilis -----%3B E%3D3e-95 COG: slr0077%3B COG0520 Selenocysteine lyase%3B E%3D1e-98 PFAM: PF00266%3B Aminotransferase class-V%3B E%3D7.2e-16 gene gene1960 http://www.ncbi.nlm.nih.gov/gene/?term=RB3597 RB3598 RB3598 xseA xseA 1870618 1871946 + exodeoxyribonuclease VII large subunit PMID: 3021756 PMID: 6284744 PMID: 9278503 best DB hits: BLAST: gb:AAA24766.1%3B (J02599) Exonuclease VII large subunit%3B E%3D2e-56 swissprot:P04994%3B EX7L_ECOLI EXODEOXYRIBONUCLEASE VII LARGE%3B E%3D4e-56 pir:B82282%3B exodeoxyribonuclease VII%2C large chain VC0766 [imported]%3B E%3D2e-55 COG: xseA%3B COG1570 Exonuclease VII%2C large subunit%3B E%3D4e-57 PFAM: PF01336%3B OB-fold nucleic acid binding dom%3B E%3D3.6e-11 PF02601%3B Exonuclease VII%2C large subunit%3B E%3D3.5e-45 gene gene1961 http://www.ncbi.nlm.nih.gov/gene/?term=RB3598 RB3599 RB3599 kel kel 1871888 1872985 + ring canal kelch protein PMID: 8453663 PMID: 9118811 best DB hits: BLAST: gb:AAF53651.1%3B (AE003657) kel gene product [Drosophila%3B E%3D8e-17 swissprot:Q04652%3B KELC_DROME RING CANAL KELCH PROTEIN [CONTAINS:%3B E%3D8e-17 gb:AAA53471.1%3B (L08483) ring canal protein [Drosophila%3B E%3D1e-15 PFAM: PF01344%3B Kelch motif%3B E%3D2.6e-07 gene gene1962 http://www.ncbi.nlm.nih.gov/gene/?term=RB3599 RB36 RB36 RB36 17693 17839 - hypothetical protein gene gene19 http://www.ncbi.nlm.nih.gov/gene/?term=RB36 RB360 RB360 RB360 179596 180843 - hypothetical protein PMID: 11214968 gene gene203 http://www.ncbi.nlm.nih.gov/gene/?term=RB360 RB3600 RB3600 RB3600 1873016 1873519 - signal peptide gene gene1963 http://www.ncbi.nlm.nih.gov/gene/?term=RB3600 RB3601 RB3601 RB3601 1873531 1874262 - alginate lyase PMID: 8200539 best DB hits: BLAST: embl:CAB61821.1%3B (AL133236) polyguluronate lyase%3B E%3D1e-33 ddbj:BAA83339.1%3B (AB030481) polyguluronate lyase [Corynebacterium%3B E%3D7e-33 swissprot:Q59478%3B ALYA_KLEPN ALGINATE LYASE PRECURSOR%3B E%3D4e-08 PFAM: PF00217%3B ATP:guanido phosphotransferase%3B E%3D0.69 gene gene1964 http://www.ncbi.nlm.nih.gov/gene/?term=RB3601 RB3603 RB3603 RB3603 1874427 1875461 - peptidase yuxL PMID: 9384377 best DB hits: BLAST: gb:AAB01192.1%3B (U55864) apical gut membrane polyprotein%3B E%3D0.015 embl:CAB60199.1%3B (AJ250881) P1a6 protein [Haemonchus contortus]%3B E%3D0.015 swissprot:P39839%3B YUXL_BACSU PROBABLE PEPTIDASE YUXL -----%3B E%3D0.034 COG: BS_yuxL%3B COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases%3B E%3D0.003 HI0382%3B COG0823 Periplasmic component of the Tol biopolymer%3B E%3D0.007 gene gene1965 http://www.ncbi.nlm.nih.gov/gene/?term=RB3603 RB3605 RB3605 RB3605 1875637 1877481 - response regulator PMID: 9384377 best DB hits: BLAST: pir:H83386%3B conserved hypothetical protein PA2072 [imported] -%3B E%3D1e-82 swissprot:P55552%3B Y4LL_RHISN HYPOTHETICAL 91.8 KD PROTEIN Y4LL%3B E%3D9e-82 pir:C83070%3B conserved hypothetical protein PA4601 [imported] -%3B E%3D7e-81 COG: PA2072_4%3B COG2200 Diguanylate cyclase/phosphodiesterase domain 2%3B E%3D2e-52 yddU_3%3B COG2200 Diguanylate cyclase/phosphodiesterase domain 2 (EAL)%3B E%3D1e-45 PA0575_4%3B COG2200 Diguanylate cyclase/phosphodiesterase domain 2%3B E%3D2e-44 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D0.52 PF00990%3B GGDEF domain%3B E%3D2.2e-63 PF00563%3B Domain of unknown function 2%3B E%3D3.6e-67 gene gene1966 http://www.ncbi.nlm.nih.gov/gene/?term=RB3605 RB3606 RB3606 fixL fixL 1877478 1879433 - sensor protein fixL PMID: 2046550 PMID: 1766374 best DB hits: BLAST: gb:AAD12184.1%3B (U57900) utilizing regulatory protein tutC%3B E%3D4e-13 swissprot:P26489%3B FIXL_AZOCA SENSOR PROTEIN FIXL ----- pir:%3B E%3D6e-13 ddbj:BAA89701.1%3B (AB030079) 145..153:the transposed position of%3B E%3D7e-13 COG: VNG1464G_1%3B COG2202 PAS/PAC domain%3B E%3D4e-11 BH0536%3B COG0642 Sensory transduction histidine kinases%3B E%3D4e-11 BS_ytvA_1%3B COG2202 PAS/PAC domain%3B E%3D2e-09 PFAM: PF00989%3B PAS domain%3B E%3D0.00031 PF00785%3B PAC motif%3B E%3D3e-08 PF02518%3B Histidine kinase-%2C DNA gyrase B-%3B E%3D8e-26 gene gene1967 http://www.ncbi.nlm.nih.gov/gene/?term=RB3606 RB3607 RB3607 RB3607 1879436 1880029 - hypothetical protein gene gene1968 http://www.ncbi.nlm.nih.gov/gene/?term=RB3607 RB3610 RB3610 RB3610 1880082 1880339 - hypothetical protein gene gene1969 http://www.ncbi.nlm.nih.gov/gene/?term=RB3610 RB3611 RB3611 RB3611 1880300 1880452 + hypothetical protein gene gene1970 http://www.ncbi.nlm.nih.gov/gene/?term=RB3611 RB3612 RB3612 RB3612 1880446 1881261 + hypothetical protein PMID: 10984043 best DB hits: BLAST: embl:CAA98155.1%3B (Z73914) ORF378 protein [Pseudomonas stutzeri]%3B E%3D1e-15 pir:E83414%3B conserved hypothetical protein PA1854 [imported] -%3B E%3D2e-14 pir:S77003%3B hypothetical protein slr0789 - Synechocystis sp. (strain%3B E%3D1e-10 gene gene1971 http://www.ncbi.nlm.nih.gov/gene/?term=RB3612 RB3613 RB3613 RB3613 1881291 1881455 + hypothetical protein gene gene1972 http://www.ncbi.nlm.nih.gov/gene/?term=RB3613 RB3614 RB3614 atoC atoC 1881510 1882976 - acetoacetate metabolism regulatory protein atoC PMID: 8346225 PMID: 9278503 best DB hits: BLAST: swissprot:Q06065%3B ATOC_ECOLI ACETOACETATE METABOLISM REGULATORY%3B E%3D8e-80 swissprot:P21712%3B YFHA_ECOLI HYPOTHETICAL 49.1 KDA PROTEIN IN%3B E%3D3e-75 gb:AAG45333.1%3B AF273214_1 (AF273214) SasR [Myxococcus xanthus]%3B E%3D4e-74 COG: atoC%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D8e-81 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D5.1e-26 PF00158%3B Sigma-54 interaction domain%3B E%3D2.8e-114 gene gene1973 http://www.ncbi.nlm.nih.gov/gene/?term=RB3614 RB3615 RB3615 atoS atoS 1882928 1884160 - sensor protein atoS PMID: 8346225 PMID: 9278503 best DB hits: BLAST: embl:CAB64771.1%3B (AJ007794) kin1 [Bacillus cereus] -----%3B E%3D3e-20 gb:AAD47812.1%3B (AF163841) histidine protein kinase%3B E%3D1e-19 pir:G82495%3B probable C4-dicarboxylate transport sensor protein%3B E%3D7e-19 COG: VCA0141%3B COG0642 Sensory transduction histidine kinases%3B E%3D7e-20 PFAM: PF00989%3B PAS domain%3B E%3D0.031 PF00785%3B PAC motif%3B E%3D1.5e-10 PF00512%3B His Kinase A (phosphoacceptor) doma%3B E%3D1.3e-12 gene gene1974 http://www.ncbi.nlm.nih.gov/gene/?term=RB3615 RB3618 RB3618 RB3618 1884325 1884768 - hypothetical protein gene gene1975 http://www.ncbi.nlm.nih.gov/gene/?term=RB3618 RB362 RB362 RB362 180893 181831 - hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:G83242%3B hypothetical protein PA3219 [imported] - Pseudomonas%3B E%3D9e-45 pir:D83421%3B conserved hypothetical protein PA1792 [imported] -%3B E%3D0.024 pir:C82150%3B conserved hypothetical protein VC1850 [imported] -%3B E%3D0.030 COG: PA3219%3B COG2908 Uncharacterized BCR%3B E%3D8e-46 gene gene204 http://www.ncbi.nlm.nih.gov/gene/?term=RB362 RB3621 RB3621 RB3621 1884713 1885000 + hypothetical protein gene gene1976 http://www.ncbi.nlm.nih.gov/gene/?term=RB3621 RB3622 RB3622 nhaA nhaA 1885051 1886373 + Na(+)/H(+) antiporter 1 PMID: 2839489 PMID: 1657980 PMID: 1645730 PMID: 8381959 best DB hits: BLAST: pir:B71805%3B Na+H+-exchanging protein 1 - Helicobacter pylori%3B E%3D4e-73 pir:H64713%3B Na+H+-exchanging protein - Helicobacter pylori (strain%3B E%3D1e-72 pir:JX0360%3B Na+H+-exchanging protein - Vibrio parahaemolyticus%3B E%3D2e-65 COG: jhp1447%3B COG3004 Na+/H+ antiporter%3B E%3D4e-74 gene gene1977 http://www.ncbi.nlm.nih.gov/gene/?term=RB3622 RB3623 RB3623 RB3623 1886488 1886670 - hypothetical protein gene gene1978 http://www.ncbi.nlm.nih.gov/gene/?term=RB3623 RB3624 RB3624 RB3624 1886670 1886786 + hypothetical protein gene gene1979 http://www.ncbi.nlm.nih.gov/gene/?term=RB3624 RB3625 RB3625 RB3625 1886871 1887470 + signal peptide gene gene1980 http://www.ncbi.nlm.nih.gov/gene/?term=RB3625 RB3626 RB3626 RB3626 1887441 1887656 - hypothetical protein gene gene1981 http://www.ncbi.nlm.nih.gov/gene/?term=RB3626 RB3627 RB3627 RB3627 1887640 1888482 - hypothetical protein PMID: 10567266 best DB hits: BLAST: pir:G75469%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D5e-33 swissprot:Q49757%3B YP69_MYCLE HYPOTHETICAL 31.1 KDA PROTEIN%3B E%3D4e-09 pir:E83429%3B conserved hypothetical protein PA1732 [imported] -%3B E%3D6e-09 COG: DR0843%3B COG1305 transglutaminases%2C cysteine%3B E%3D5e-34 PFAM: PF01841%3B Transglutaminase-like superfam%3B E%3D5.8e-16 gene gene1982 http://www.ncbi.nlm.nih.gov/gene/?term=RB3627 RB363 RB363 RB363 181855 182100 + hypothetical protein gene gene205 http://www.ncbi.nlm.nih.gov/gene/?term=RB363 RB3630 RB3630 RB3630 1888468 1889409 + hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:D83354%3B hypothetical protein PA2331 [imported] - Pseudomonas%3B E%3D7e-26 pir:B81134%3B macrophage infectivity potentiator-related protein%3B E%3D2e-19 pir:D81888%3B hypothetical protein NMA1203 [imported] - Neisseria%3B E%3D4e-18 COG: PA2331%3B COG2128 Uncharacterized ACR%3B E%3D6e-27 gene gene1983 http://www.ncbi.nlm.nih.gov/gene/?term=RB3630 RB3632 RB3632 RB3632 1889505 1890254 + short chain dehydrogenase PMID: 8905231 best DB hits: BLAST: pir:S77301%3B hypothetical protein sll1308 - Synechocystis sp. (strain%3B E%3D2e-62 gb:AAD46515.1%3B AF145724_4 (AF145724) oxidoreductase homolog%3B E%3D2e-16 pir:T37016%3B probable oxidoreductase - Streptomyces coelicolor%3B E%3D2e-14 COG: sll1308%3B COG1028 Dehydrogenases with different specificities%3B E%3D2e-63 Rv3174%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D4e-14 slr0315%3B COG1028 Dehydrogenases with different specificities%3B E%3D1e-10 PFAM: PF00107%3B Zinc-binding dehydrogenases%3B E%3D0.013 PF00106%3B short chain dehydrogenase%3B E%3D2.2e-34 gene gene1984 http://www.ncbi.nlm.nih.gov/gene/?term=RB3632 RB3633 RB3633 RB3633 1890211 1890483 - hypothetical protein gene gene1985 http://www.ncbi.nlm.nih.gov/gene/?term=RB3633 RB3634 RB3634 RB3634 1890438 1890641 - hypothetical protein gene gene1986 http://www.ncbi.nlm.nih.gov/gene/?term=RB3634 RB3635 RB3635 RB3635 1890589 1891878 + secreted glycosyl hydrolase PMID: 8843436 best DB hits: BLAST: embl:CAB94634.1%3B (AL359215) secreted glycosyl hydrolase.%3B E%3D4e-06 pir:T34929%3B hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces%3B E%3D3e-05 pir:T35028%3B probable glycosyl hydrolase - Streptomyces coelicolor%3B E%3D2e-04 gene gene1987 http://www.ncbi.nlm.nih.gov/gene/?term=RB3635 RB3639 RB3639 RB3639 1891875 1892711 + hypothetical protein PMID: 9384377 best DB hits: BLAST: pir:C69797%3B conserved hypothetical protein yesT - Bacillus subtilis%3B E%3D4e-27 gb:AAF25818.1%3B AF184175_1 (AF184175) cephalosporin C deacetylase%3B E%3D2e-23 pir:H69797%3B rhamnogalacturonan acetylesterase homolog yesY -%3B E%3D2e-22 gene gene1988 http://www.ncbi.nlm.nih.gov/gene/?term=RB3639 RB3641 RB3641 RB3641 1892708 1894723 + cycloisomerase PMID: 9384377 best DB hits: BLAST: swissprot:O34499%3B YKGB_BACSU HYPOTHETICAL 38.4 KDA PROTEIN IN%3B E%3D2e-41 embl:CAB66198.1%3B (AL136502) hypothetical protein SCF43.09.%3B E%3D2e-41 pir:A83120%3B conserved hypothetical protein PA4204 [imported] -%3B E%3D9e-41 COG: BS_ykgB%3B COG2706 3-carboxymuconate cyclase%3B E%3D2e-42 PFAM: PF01453%3B Lectin (probable mannose binding)%3B E%3D0.047 gene gene1989 http://www.ncbi.nlm.nih.gov/gene/?term=RB3641 RB3644 RB3644 RB3644 1894801 1895184 - hypothetical protein gene gene1990 http://www.ncbi.nlm.nih.gov/gene/?term=RB3644 RB3645 RB3645 RB3645 1895230 1895505 - hypothetical protein gene gene1991 http://www.ncbi.nlm.nih.gov/gene/?term=RB3645 RB3646 RB3646 RB3646 1895252 1895407 + hypothetical protein gene gene1992 http://www.ncbi.nlm.nih.gov/gene/?term=RB3646 RB3647 RB3647 RB3647 1895295 1895447 - hypothetical protein gene gene1993 http://www.ncbi.nlm.nih.gov/gene/?term=RB3647 RB3648 RB3648 RB3648 1895481 1896881 - oxidoreductase best DB hits: BLAST: pir:T36464%3B probable oxidoreductase - Streptomyces coelicolor%3B E%3D3e-07 ddbj:BAB05884.1%3B (AP001514) BH2165~~unknown conserved protein%3B E%3D6e-06 ddbj:BAB04206.1%3B (AP001508) BH0487~~unknown conserved protein%3B E%3D3e-05 COG: BH2165%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D6e-07 PFAM: PF01408%3B Oxidoreductase%2C NAD-bindi%3B E%3D6e-18 gene gene1994 http://www.ncbi.nlm.nih.gov/gene/?term=RB3648 RB365 RB365 RB365 182117 183754 - signal peptide PMID: 11259647 gene gene206 http://www.ncbi.nlm.nih.gov/gene/?term=RB365 RB3650 RB3650 RB3650 1896821 1897060 + hypothetical protein gene gene1995 http://www.ncbi.nlm.nih.gov/gene/?term=RB3650 RB3651 RB3651 RB3651 1896937 1897104 + hypothetical protein gene gene1996 http://www.ncbi.nlm.nih.gov/gene/?term=RB3651 RB3653 RB3653 RB3653 1897256 1898083 + transcriptional regulator PMID: 10952301 best DB hits: BLAST: pir:F82388%3B transcriptional regulator AraCXylS family VCA1001%3B E%3D3e-25 pir:C83237%3B probable transcriptional regulator PA3269 [imported] -%3B E%3D2e-24 embl:CAB88172.1%3B (AL352972) araC-family regulatory%3B E%3D1e-23 COG: VCA1001%3B COG2207 AraC-type DNA-binding domain-containing proteins%3B E%3D2e-26 PFAM: PF00165%3B Bacterial regulatory helix-turn-heli%3B E%3D3e-20 gene gene1997 http://www.ncbi.nlm.nih.gov/gene/?term=RB3653 RB3654 RB3654 RB3654 1898112 1898300 + hypothetical protein gene gene1998 http://www.ncbi.nlm.nih.gov/gene/?term=RB3654 RB3655 RB3655 RB3655 1898244 1898435 - hypothetical protein gene gene1999 http://www.ncbi.nlm.nih.gov/gene/?term=RB3655 RB3656 RB3656 RB3656 1898389 1899330 + polyketide cyclase/dehydrase PMID: 9349712 PMID: 10639368 best DB hits: BLAST: gb:AAF01818.1%3B AF187532_14 (AF187532) polyketide cyclase%3B E%3D6e-05 pir:D70817%3B hypothetical protein Rv1716 - Mycobacterium tuberculosis%3B E%3D0.17 gb:AAG30196.1%3B (AF293442) cyclase [Streptomyces sp. R1128]%3B E%3D0.33 gene gene2000 http://www.ncbi.nlm.nih.gov/gene/?term=RB3656 RB3657 RB3657 RB3657 1899390 1900178 + 3-oxoacyl-ACP reductase PMID: 1556094 PMID: 9384377 best DB hits: BLAST: pir:E70027%3B probable 3-oxoacyl-[acyl-carrier-protein] reductase (EC%3B E%3D6e-73 pir:H83476%3B probable short-chain dehydrogenase PA1344 [imported] -%3B E%3D7e-62 embl:CAB60468.1%3B (AL132856) probable oxidoreductase [Streptomyces%3B E%3D8e-54 COG: BS_yvaG%3B COG1028 Dehydrogenases with different specificities%3B E%3D6e-74 PA1344%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D7e-63 BS_yvrD%3B COG1028 Dehydrogenases with different specificities%3B E%3D3e-54 PFAM: PF00106%3B short chain dehydrogenase%3B E%3D1.9e-41 PF00678%3B Short chain dehydrogenase/reduct%3B E%3D3.3e-08 gene gene2001 http://www.ncbi.nlm.nih.gov/gene/?term=RB3657 RB3658 RB3658 RB3658 1900175 1900393 - hypothetical protein gene gene2002 http://www.ncbi.nlm.nih.gov/gene/?term=RB3658 RB3659 RB3659 RB3659 1900428 1900607 + signal peptide gene gene2003 http://www.ncbi.nlm.nih.gov/gene/?term=RB3659 RB3660 RB3660 RB3660 1900570 1900854 - hypothetical protein gene gene2004 http://www.ncbi.nlm.nih.gov/gene/?term=RB3660 RB3661 RB3661 RB3661 1900902 1901810 - hypothetical protein gene gene2005 http://www.ncbi.nlm.nih.gov/gene/?term=RB3661 RB3662 RB3662 RB3662 1901893 1902024 - hypothetical protein gene gene2006 http://www.ncbi.nlm.nih.gov/gene/?term=RB3662 RB3663 RB3663 RB3663 1902119 1902328 - hypothetical protein gene gene2007 http://www.ncbi.nlm.nih.gov/gene/?term=RB3663 RB3664 RB3664 RB3664 1902304 1902561 + hypothetical protein gene gene2008 http://www.ncbi.nlm.nih.gov/gene/?term=RB3664 RB3665 RB3665 RB3665 1902717 1903076 - hypothetical protein gene gene2009 http://www.ncbi.nlm.nih.gov/gene/?term=RB3665 RB3668 RB3668 RB3668 1903100 1903270 - hypothetical protein gene gene2010 http://www.ncbi.nlm.nih.gov/gene/?term=RB3668 RB3669 RB3669 RB3669 1903269 1903577 + hypothetical protein gene gene2011 http://www.ncbi.nlm.nih.gov/gene/?term=RB3669 RB367 RB367 RB367 183721 183924 - hypothetical protein gene gene207 http://www.ncbi.nlm.nih.gov/gene/?term=RB367 RB3670 RB3670 RB3670 1903537 1903998 - transposase of IS981C PMID: 2824781 best DB hits: BLAST: gb:AAK04755.1%3B AE006299_1 (AE006299) transposase of IS981C%3B E%3D1e-09 gb:AAK05346.1%3B AE006357_1 (AE006357) transposase of IS981G%3B E%3D1e-09 gb:AAK06124.1%3B AE006432_6 (AE006432) transposase of IS981J%3B E%3D1e-09 COG: PA0257%3B COG2801 transposase%3B E%3D1e-07 yagA%3B COG1425 Predicted transposase%3B E%3D6e-05 HI1721%3B COG2801 transposase%3B E%3D9e-05 PFAM: PF00665%3B Integrase core domain%3B E%3D2.5e-27 gene gene2012 http://www.ncbi.nlm.nih.gov/gene/?term=RB3670 RB3672 RB3672 RB3672 1904022 1904294 + hypothetical protein gene gene2013 http://www.ncbi.nlm.nih.gov/gene/?term=RB3672 RB3673 RB3673 RB3673 1904396 1904647 - hypothetical protein best DB hits: PFAM: PF00501%3B AMP-binding enzyme%3B E%3D0.031 gene gene2014 http://www.ncbi.nlm.nih.gov/gene/?term=RB3673 RB3675 RB3675 RB3675 1904552 1906780 + signal peptide best DB hits: BLAST: embl:CAA84826.1%3B (Z35768) ORF YBL007c [Saccharomyces cerevisiae]%3B E%3D0.22 gene gene2015 http://www.ncbi.nlm.nih.gov/gene/?term=RB3675 RB3678 RB3678 apbE apbE 1906968 1907591 + thiamin biosynthesis lipoprotein apbE PMID: 9473043 best DB hits: BLAST: embl:CAB53356.1%3B (AJ010260) NosX protein [Paracoccus%3B E%3D6e-14 gb:AAD09162.2%3B (AF047429) NosX [Achromobacter cycloclastes]%3B E%3D1e-13 pir:F81184%3B thiamin biosynthesis lipoprotein ApbE NMB0563 [imported]%3B E%3D1e-12 COG: NMB0563%3B COG1477 Membrane-associated lipoprotein involved in%3B E%3D1e-13 VC2289%3B COG1477 Membrane-associated lipoprotein involved in thiamine%3B E%3D2e-13 aq_1258%3B COG1477 Membrane-associated lipoprotein involved in%3B E%3D1e-09 PFAM: PF02424%3B ApbE family%3B E%3D2.7e-28 gene gene2016 http://www.ncbi.nlm.nih.gov/gene/?term=RB3678 RB368 RB368 RB368 183951 184247 + hypothetical protein gene gene208 http://www.ncbi.nlm.nih.gov/gene/?term=RB368 RB3680 RB3680 RB3680 1907555 1908097 + hypothetical protein PMID: 20437337 best DB hits: BLAST: pir:B83125%3B conserved hypothetical protein PA4169 [imported] -%3B E%3D5e-32 embl:CAB71827.1%3B (AL138662) hypothetical protein SC8E4A.22%3B E%3D2e-14 pir:D70063%3B hypothetical protein ywnA - Bacillus subtilis -----%3B E%3D8e-08 COG: PA4169%3B COG1959 Predicted transcriptional regulator%3B E%3D5e-33 PFAM: PF02082%3B Uncharacterized protein family UPF00%3B E%3D0.0035 gene gene2017 http://www.ncbi.nlm.nih.gov/gene/?term=RB3680 RB3681 RB3681 RB3681 1908081 1908776 + hypothetical protein PMID: 10086842 best DB hits: BLAST: pir:T44299%3B hypothetical protein ycgJ [imported] - Bacillus%3B E%3D2e-25 ddbj:BAB04377.1%3B (AP001509) BH0658~~unknown conserved protein%3B E%3D2e-25 pir:G83392%3B hypothetical protein PA2034 [imported] - Pseudomonas%3B E%3D1e-08 COG: BH0658%3B COG0500 SAM-dependent methyltransferases%3B E%3D2e-26 DR2405%3B COG2226 Methylase involved in ubiquinone/menaquinone%3B E%3D5e-04 PA3515%3B COG0500 SAM-dependent methyltransferases%3B E%3D0.002 gene gene2018 http://www.ncbi.nlm.nih.gov/gene/?term=RB3681 RB3682 RB3682 RB3682 1908788 1909108 + hypothetical protein gene gene2019 http://www.ncbi.nlm.nih.gov/gene/?term=RB3682 RB3683 RB3683 RB3683 1909087 1909212 + hypothetical protein gene gene2020 http://www.ncbi.nlm.nih.gov/gene/?term=RB3683 RB3684 RB3684 RB3684 1909183 1909380 - hypothetical protein gene gene2021 http://www.ncbi.nlm.nih.gov/gene/?term=RB3684 RB3686 RB3686 RB3686 1909540 1910523 - zinc-binding oxidoreductase PMID: 8843436 best DB hits: BLAST: embl:CAC14345.1%3B (AL445945) zinc-binding oxidoreductase%3B E%3D2e-32 pir:C70418%3B probable alcohol dehydrogenase (EC 1.1.1.-) - Aquifex%3B E%3D4e-28 embl:CAB70647.1%3B (AL137242) zinc-binding oxidoreductase%3B E%3D2e-27 COG: aq_1362%3B COG0604 NADPH:quinone reductase and related Zn-dependent%3B E%3D3e-29 PFAM: PF00696%3B Amino acid kinase%3B E%3D0.7 PF00107%3B Zinc-binding dehydrogenases%3B E%3D2.2e-72 gene gene2022 http://www.ncbi.nlm.nih.gov/gene/?term=RB3686 RB3688 RB3688 RB3688 1910468 1910629 - hypothetical protein gene gene2023 http://www.ncbi.nlm.nih.gov/gene/?term=RB3688 RB3689 RB3689 RB3689 1910656 1911402 - hydrolase of unknown specificity PMID: 10984043 best DB hits: BLAST: pir:C83343%3B probable hydrolase PA2419 [imported] - Pseudomonas%3B E%3D6e-66 gb:AAD16957.1%3B (AF106566) SlsA [Salmonella typhimurium]%3B E%3D2e-62 pdb:1YAC%3B A Chain A%2C The 1.8 Angstrom Crystal Structure Of The%3B E%3D6e-42 COG: PA2419%3B COG1335 Amidases related to nicotinamidase%3B E%3D6e-67 PFAM: PF00857%3B Isochorismatase%3B E%3D7e-11 gene gene2024 http://www.ncbi.nlm.nih.gov/gene/?term=RB3689 RB369 RB369 RB369 184244 184384 - hypothetical protein gene gene209 http://www.ncbi.nlm.nih.gov/gene/?term=RB369 RB3692 RB3692 RB3692 1911487 1912413 - AraC family transcriptional regulator PMID: 10543838 best DB hits: BLAST: pir:E83158%3B probable transcriptional regulator PA3898 [imported] -%3B E%3D1e-17 ddbj:BAA86295.1%3B (AB006902) XylsAraC-type transcriptional%3B E%3D2e-17 pir:S77548%3B lumQ protein - Synechocystis sp. (strain PCC 6803)%3B E%3D4e-16 COG: PA3898%3B COG2207 AraC-type DNA-binding domain-containing proteins%3B E%3D1e-18 PFAM: PF00165%3B Bacterial regulatory helix-turn-heli%3B E%3D8e-24 gene gene2025 http://www.ncbi.nlm.nih.gov/gene/?term=RB3692 RB3693 RB3693 RB3693 1912410 1912649 - hypothetical protein gene gene2026 http://www.ncbi.nlm.nih.gov/gene/?term=RB3693 RB3694 RB3694 RB3694 1912676 1913521 - non-heme chloroperoxidase PMID: 9143122 best DB hits: BLAST: swissprot:O05691%3B THCF_RHOER NON-HEME HALOPEROXIDASE ----- gb:%3B E%3D1e-113 swissprot:P25026%3B PRXC_PSEPY NON-HEME CHLOROPEROXIDASE (CHLORIDE%3B E%3D1e-111 pir:G83304%3B chloroperoxidase precursor PA2717 [imported] -%3B E%3D1e-106 COG: PA2717%3B COG0596 Predicted hydrolases or acyltransferases (alpha/beta%3B E%3D1e-107 slr0314%3B COG0596 Predicted hydrolases or acyltransferases%3B E%3D4e-49 AF0865%3B COG0596 Predicted hydrolases or acyltransferases (alpha/beta%3B E%3D3e-12 PFAM: PF02230%3B Phospholipase/Carboxylesterase%3B E%3D0.035 PF00561%3B alpha/beta hydrolase fold%3B E%3D3.5e-40 gene gene2027 http://www.ncbi.nlm.nih.gov/gene/?term=RB3694 RB3695 RB3695 RB3695 1913487 1913618 + hypothetical protein gene gene2028 http://www.ncbi.nlm.nih.gov/gene/?term=RB3695 RB3696 RB3696 RB3696 1913742 1914149 - signal peptide PMID: 10567266 gene gene2029 http://www.ncbi.nlm.nih.gov/gene/?term=RB3696 RB3697 RB3697 RB3697 1914197 1914445 + hypothetical protein gene gene2030 http://www.ncbi.nlm.nih.gov/gene/?term=RB3697 RB3698 RB3698 RB3698 1914515 1914778 - hypothetical protein PMID: 11759840 best DB hits: BLAST: embl:CAA74280.1%3B (Y13942) GTN Reductase [Agrobacterium%3B E%3D1e-14 pir:C82391%3B N-ethylmaleimide reductase VCA0993 [imported] - Vibrio%3B E%3D2e-14 gb:AAD16106.1%3B (AF093246) NAD(P)H-dependent 2-cyclohexen-1-one%3B E%3D2e-13 COG: VCA0993%3B COG1902 NADH:flavin oxidoreductases%2C Old Yellow Enzyme%3B E%3D2e-15 nemA%3B COG1902 NADH:flavin oxidoreductases%2C Old Yellow Enzyme family%3B E%3D4e-10 YPL171c%3B COG1902 NADH:flavin oxidoreductases%2C Old Yellow Enzyme%3B E%3D7e-10 PFAM: PF00724%3B NADH:flavin oxidoreductase / NAD%3B E%3D3.3e-21 gene gene2031 http://www.ncbi.nlm.nih.gov/gene/?term=RB3698 RB37 RB37 RB37 17846 18328 - signal peptide gene gene20 http://www.ncbi.nlm.nih.gov/gene/?term=RB37 RB370 RB370 nrtC nrtC 184428 186089 + nitrate transport ATP-binding protein PMID: 9495773 PMID: 8437564 best DB hits: BLAST: swissprot:P73450%3B NRTC_SYNY3 NITRATE TRANSPORT ATP-BINDING PROTEIN%3B E%3D3e-61 gb:AAB86900.1%3B (L27431) nitrate transporter component%3B NasF%3B E%3D2e-51 pir:S75959%3B nitrate transport protein C-1 - Synechocystis sp.%3B E%3D6e-49 COG: sll1452_2%3B COG0715 ABC-type nitrate/sulfonate/taurine/bicarbonate%3B E%3D3e-62 gene gene210 http://www.ncbi.nlm.nih.gov/gene/?term=RB370 RB3700 RB3700 RB3700 1914854 1915327 - hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:D83102%3B xenobiotic reductase PA4356 [imported] - Pseudomonas%3B E%3D1e-33 gb:AAD16106.1%3B (AF093246) NAD(P)H-dependent 2-cyclohexen-1-one%3B E%3D6e-32 ddbj:BAA88211.1%3B (AB025798) NAD(P)H-dependent 2-cyclohexen-1-one%3B E%3D1e-31 COG: PA4356%3B COG1902 NADH:flavin oxidoreductases%2C Old Yellow Enzyme%3B E%3D1e-34 nemA%3B COG1902 NADH:flavin oxidoreductases%2C Old Yellow Enzyme family%3B E%3D1e-27 VCA0998%3B COG1902 NADH:flavin oxidoreductases%2C Old Yellow Enzyme%3B E%3D8e-26 PFAM: PF00724%3B NADH:flavin oxidoreductase / NAD%3B E%3D2e-38 gene gene2032 http://www.ncbi.nlm.nih.gov/gene/?term=RB3700 RB3701 RB3701 RB3701 1915292 1915474 + hypothetical protein gene gene2033 http://www.ncbi.nlm.nih.gov/gene/?term=RB3701 RB3702 RB3702 RB3702 1915478 1915789 + transcriptional regulator PMID: 10567266 best DB hits: BLAST: pir:D75588%3B transcriptional regulator%2C HTH_1 family - Deinococcus%3B E%3D1e-15 swissprot:Q04778%3B ALSR_BACSU ALS OPERON REGULATORY PROTEIN -----%3B E%3D3e-15 pir:A83017%3B probable transcriptional regulator PA5029 [imported] -%3B E%3D6e-15 COG: DRA0336%3B COG0583 Transcriptional regulator%3B E%3D1e-16 PFAM: PF00126%3B Bacterial regulatory helix-turn-heli%3B E%3D1.7e-25 gene gene2034 http://www.ncbi.nlm.nih.gov/gene/?term=RB3702 RB3703 RB3703 RB3703 1915847 1916425 + transcriptional regulator PMID: 10496884 best DB hits: BLAST: gb:AAD54118.1%3B AF134978_1 (AF134978) transcriptional%3B E%3D1e-10 pir:T47029%3B hypothetical protein [imported] - Yersinia pestis%3B E%3D3e-10 gb:AAC79916.1%3B (U93090) LysR-type regulatory protein [Comamonas%3B E%3D1e-08 COG: PA5029%3B COG0583 Transcriptional regulator%3B E%3D1e-07 gene gene2035 http://www.ncbi.nlm.nih.gov/gene/?term=RB3703 RB3706 RB3706 apbE apbE 1916890 1917948 + thiamine biosynthesis lipoprotein apbE [precursor] PMID: 7542800 best DB hits: BLAST: swissprot:P44550%3B APBE_HAEIN THIAMINE BIOSYNTHESIS LIPOPROTEIN%3B E%3D2e-24 pir:D72239%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D7e-24 gb:AAK03418.1%3B (AE006171) ApbE [Pasteurella multocida]%3B E%3D4e-23 COG: HI0172%3B COG1477 Membrane-associated lipoprotein involved in thiamine%3B E%3D2e-25 NMB0563%3B COG1477 Membrane-associated lipoprotein involved in%3B E%3D6e-22 XF0594%3B COG1477 Membrane-associated lipoprotein involved in thiamine%3B E%3D2e-20 PFAM: PF02424%3B ApbE family%3B E%3D3.5e-52 gene gene2037 http://www.ncbi.nlm.nih.gov/gene/?term=RB3706 RB3707 RB3707 RB3707 1918042 1918668 + hypothetical protein gene gene2038 http://www.ncbi.nlm.nih.gov/gene/?term=RB3707 RB3708 RB3708 speA speA 1918712 1920718 + arginine decarboxylase catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis gene gene2039 http://www.ncbi.nlm.nih.gov/gene/?term=RB3708 RB3710 RB3710 RB3710 1920808 1922382 + hypothetical protein PMID: 10484179 best DB hits: BLAST: ddbj:BAB04808.1%3B (AP001510) BH1089~~unknown conserved protein%3B E%3D1e-160 swissprot:P54608%3B YHCX_BACSU HYPOTHETICAL 60.2 KD PROTEIN IN%3B E%3D1e-156 pir:JC4601%3B hypothetical 48.2k protein - Sphingomonas yanoikuyae%3B E%3D5e-76 COG: BH1089_2%3B COG0388 Predicted amidohydrolase%3B E%3D1e-101 BH1089_1%3B COG0454 Histone acetyltransferase HPA2 and related%3B E%3D5e-52 DR2433%3B COG0388 Predicted amidohydrolase%3B E%3D7e-26 PFAM: PF00583%3B Acetyltransferase (GNAT) family%3B E%3D0.0021 PF00795%3B Carbon-nitrogen hydrolase%3B E%3D1.3e-32 gene gene2040 http://www.ncbi.nlm.nih.gov/gene/?term=RB3710 RB3711 RB3711 RB3711 1922334 1922480 - hypothetical protein gene gene2041 http://www.ncbi.nlm.nih.gov/gene/?term=RB3711 RB3713 RB3713 RB3713 1922549 1923307 - signal peptide gene gene2042 http://www.ncbi.nlm.nih.gov/gene/?term=RB3713 RB3714 RB3714 fabB fabB 1923477 1924871 - 3-oxoacyl-ACP synthase PMID: 10484179 best DB hits: BLAST: ddbj:BAB06601.1%3B (AP001517) 3-oxoacyl-(acyl-carrier protein)%3B E%3D4e-12 pir:G69842%3B 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41)%3B E%3D5e-11 pir:C72335%3B 3-oxoacyl-(acyl carrier protein) synthase II -%3B E%3D6e-10 COG: BH2882%3B COG0304 3-oxoacyl-(acyl-carrier-protein) synthase I%3B E%3D4e-13 PFAM: PF00109%3B Beta-ketoacyl synthase%2C N-ter%3B E%3D0.00032 PF02801%3B Beta-ketoacyl synthase%2C C-ter%3B E%3D1.2e-08 gene gene2043 http://www.ncbi.nlm.nih.gov/gene/?term=RB3714 RB3716 RB3716 RB3716 1924959 1925378 - hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:G83495%3B hypothetical protein PA1203 [imported] - Pseudomonas%3B E%3D2e-05 embl:CAC04241.1%3B (AL391515) hypothetical protein SC4B10.36c%3B E%3D0.001 embl:CAB87336.1%3B (AL163672) hypothetical protein SCE50.14c%3B E%3D0.006 COG: PA1203%3B COG1765 Uncharacterized ACR%3B E%3D2e-06 gene gene2044 http://www.ncbi.nlm.nih.gov/gene/?term=RB3716 RB3718 RB3718 RB3718 1925507 1927114 - signal peptide best DB hits: BLAST: pir:T27128%3B hypothetical protein Y53C12A.2 - Caenorhabditis elegans%3B E%3D0.79 gene gene2045 http://www.ncbi.nlm.nih.gov/gene/?term=RB3718 RB3719 RB3719 RB3719 1927075 1927500 - hypothetical protein gene gene2046 http://www.ncbi.nlm.nih.gov/gene/?term=RB3719 RB372 RB372 nrtB nrtB 186173 187288 + nitrate transport permease PMID: 8437564 best DB hits: BLAST: ddbj:BAA21794.1%3B (AB000100) intrinsic membrane protein%3B E%3D6e-30 swissprot:P38044%3B NRTB_SYNP7 NITRATE TRANSPORT PERMEase%3B E%3D4e-29 gb:AAB86903.1%3B (L27431) nitrate transporter component%3B NasE%3B E%3D1e-27 COG: sll1451%3B COG0600 ABC-type nitrate/sulfonate/taurine/bicarbonate%3B E%3D9e-28 BB0145%3B COG1174 ABC-type proline/glycine betaine transport systems%2C%3B E%3D1e-05 PFAM: PF00528%3B Binding-protein-dependent transpor%3B E%3D8.5e-12 gene gene211 http://www.ncbi.nlm.nih.gov/gene/?term=RB372 RB3723 RB3723 RB3723 1927424 1927942 - hypothetical protein gene gene2047 http://www.ncbi.nlm.nih.gov/gene/?term=RB3723 RB3727 RB3727 rpoS rpoS 1927875 1928942 + RNA polymerase sigma factor rpoS PMID: 11466270 best DB hits: BLAST: gb:AAF20816.1%3B AF198628_2 (AF198628) RpoS [Xenorhabdus%3B E%3D7e-48 gb:AAG14981.1%3B AF242209_6 (AF242209) alternative sigma factor%3B E%3D3e-47 gb:AAG53883.1%3B AF275947_2 (AF275947) sigma factor RpoS%3B E%3D3e-47 COG: VC0534%3B COG0568 DNA-directed RNA polymerase sigma subunits%3B E%3D8e-48 PFAM: PF00140%3B Sigma-70 factor%3B E%3D1.3e-77 gene gene2048 http://www.ncbi.nlm.nih.gov/gene/?term=RB3727 RB3729 RB3729 RB3729 1929020 1930213 - ABC transporter ATP-binding protein PMID: 9767151 best DB hits: BLAST: pir:A55541%3B heterocyst maturation protein devA - Anabaena sp.%3B E%3D4e-54 embl:CAA05977.1%3B (AJ003195) ATP-binding subunit [Anabaena%3B E%3D1e-53 pir:S76632%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D2e-49 COG: sll0484%3B COG1136 ABC-type (unclassified) transport system%2C ATPase%3B E%3D2e-50 PA2350%3B COG1135 Uncharacterized ABC-type transport system ATPase%3B E%3D6e-26 TM0352%3B COG1136 ABC-type (unclassified) transport system%2C ATPase%3B E%3D2e-25 PFAM: PF01583%3B Adenylylsulfate kinase%3B E%3D0.19 PF00005%3B ABC transporter%3B E%3D3.2e-50 PF00027%3B Cyclic nucleotide-binding domain%3B E%3D1.6e-20 gene gene2049 http://www.ncbi.nlm.nih.gov/gene/?term=RB3729 RB373 RB373 nrtC nrtC 187285 188283 + nitrate transport ATP-binding protein PMID: 8437564 best DB hits: BLAST: pir:S58789%3B ATP binding protein nrtC - oscillatoriacean%3B E%3D4e-60 swissprot:P38045%3B NRTC_SYNP7 NITRATE TRANSPORT ATP-BINDING PROTEIN%3B E%3D2e-59 pir:S75959%3B nitrate transport protein C-1 - Synechocystis sp.%3B E%3D9e-59 COG: sll1453%3B COG1116 ABC-type nitrate/sulfonate/taurine/bicarbonate%3B E%3D6e-59 NMB0610%3B COG1130 ABC-type sugar/spermidine/putrescine transport%3B E%3D1e-35 PA2308%3B COG1116 ABC-type nitrate/sulfonate/taurine/bicarbonate%3B E%3D2e-35 PFAM: PF00485%3B Phosphoribulokinase / Uridine kinase%3B E%3D0.18 PF00005%3B ABC transporter%3B E%3D2.2e-56 gene gene212 http://www.ncbi.nlm.nih.gov/gene/?term=RB373 RB3730 RB3730 RB3730 1930294 1931586 + hypothetical protein PMID: 11759840 best DB hits: BLAST: pir:S76813%3B hypothetical protein sll1481 - Synechocystis sp. (strain%3B E%3D7e-07 embl:CAA59428.1%3B (X85107) alpha3a subunit of laminin 5 [Homo%3B E%3D0.040 embl:CAA59429.1%3B (X85108) alpha3b subunit of laminin 5 [Homo%3B E%3D0.040 COG: sll1481%3B COG0845 Membrane-fusion protein%3B E%3D6e-08 PFAM: PF00364%3B Biotin-requiring enzyme%3B E%3D0.26 gene gene2050 http://www.ncbi.nlm.nih.gov/gene/?term=RB3730 RB3732 RB3732 RB3732 1931583 1932827 + hypothetical protein best DB hits: BLAST: pir:S76812%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D3e-33 embl:CAA67986.1%3B (X99672) devC [Anabaena sp.]%3B E%3D3e-32 embl:CAA05976.1%3B (AJ003195) membrane spanning subunit [Anabaena%3B E%3D1e-31 PFAM: PF02687%3B Predicted permease%3B E%3D1.1e-09 gene gene2051 http://www.ncbi.nlm.nih.gov/gene/?term=RB3732 RB3733 RB3733 RB3733 1932841 1933851 - dTDP-glucose 4-6-dehydratase PMID: 9174344 best DB hits: BLAST: pir:G82785%3B dTDP-glucose 4-6-dehydratase XF0611 [imported] - Xylella%3B E%3D1e-116 pir:S75550%3B dTDP-glucose 4-6-dehydratase - Synechocystis sp. (strain%3B E%3D1e-114 pir:T00419%3B dTDP-glucose 4-6-dehydratase homolog T30B22.4 -%3B E%3D1e-101 COG: XF0611%3B COG0451 Nucleoside-diphosphate-sugar epimerases%3B E%3D1e-117 MTH1789%3B COG1088 dTDP-D-glucose 4%2C6-dehydratase%3B E%3D2e-21 PA3554_2%3B COG0451 Nucleoside-diphosphate-sugar epimerases%3B E%3D3e-21 PFAM: PF01073%3B 3-beta hydroxysteroid dehydrogenase%3B E%3D0.0012 PF00106%3B short chain dehydrogenase%3B E%3D0.0069 PF01370%3B NAD dependent epimerase/dehydratase%3B E%3D3e-14 gene gene2052 http://www.ncbi.nlm.nih.gov/gene/?term=RB3733 RB3734 RB3734 RB3734 1933834 1933998 + hypothetical protein gene gene2053 http://www.ncbi.nlm.nih.gov/gene/?term=RB3734 RB3735 RB3735 panC panC 1934121 1934972 - pantoate--beta-alanine ligase PMID: 10360571 best DB hits: BLAST: swissprot:O86953%3B PANC_THENE PANTOATE--BETA-ALANINE LIGASE%3B E%3D2e-61 swissprot:Q9X0G6%3B PANC_THEMA PANTOATE--BETA-ALANINE LIGASE%3B E%3D2e-60 gb:AAG61078.1%3B AF322013_197 (AF322013) ID912 [Bradyrhizobium%3B E%3D9e-58 COG: TM1077%3B COG0414 Pantoate-beta-alanine ligase%3B E%3D2e-61 PFAM: PF02569%3B Pantoate-beta-alanine ligase%3B E%3D5.1e-126 gene gene2054 http://www.ncbi.nlm.nih.gov/gene/?term=RB3735 RB3739 RB3739 RB3739 1935052 1935471 - hypothetical protein PMID: 9389475 best DB hits: BLAST: gb:AAB90131.1%3B (AE001027) conserved hypothetical protein%3B E%3D3e-15 pir:A70326%3B conserved hypothetical protein aq_283 - Aquifex aeolicus%3B E%3D4e-14 pir:S77403%3B conserved hypothetical protein sll1142 - Synechocystis%3B E%3D1e-12 COG: AF1107%3B COG1259 Uncharacterized ACR%3B E%3D3e-16 PFAM: PF02577%3B Uncharacterized ACR%2C COG1259%3B E%3D3.9e-26 gene gene2055 http://www.ncbi.nlm.nih.gov/gene/?term=RB3739 RB374 RB374 nrtD nrtD 188377 189222 + nitrate transport ATP-binding protein PMID: 8437564 best DB hits: BLAST: pir:S75959%3B nitrate transport protein C-1 - Synechocystis sp.%3B E%3D1e-61 pir:S58789%3B ATP binding protein nrtC - oscillatoriacean%3B E%3D1e-61 pir:S77386%3B nitrate transport protein D-3 - Synechocystis sp.%3B E%3D2e-61 COG: sll1453%3B COG1116 ABC-type nitrate/sulfonate/taurine/bicarbonate%3B E%3D2e-62 PA3254%3B COG1130 ABC-type sugar/spermidine/putrescine transport%3B E%3D4e-29 PA2329%3B COG1116 ABC-type nitrate/sulfonate/taurine/bicarbonate%3B E%3D4e-28 PFAM: PF00005%3B ABC transporter%3B E%3D3.5e-57 gene gene213 http://www.ncbi.nlm.nih.gov/gene/?term=RB374 RB3741 RB3741 RB3741 1935468 1935782 - hypothetical protein gene gene2056 http://www.ncbi.nlm.nih.gov/gene/?term=RB3741 RB3742 RB3742 fliC fliC 1935693 1937849 + flagellin E PMID: 8752337 best DB hits: BLAST: pir:D72335%3B flagellin - Thermotoga maritima (strain MSB8) -----%3B E%3D4e-18 swissprot:P02968%3B FLA_BACSU FLAGELLIN ----- pir: FLBS68%3B E%3D6e-18 gb:AAC27808.1%3B (AF069392) polar flagellin [Vibrio%3B E%3D6e-18 COG: TM0758%3B COG1344 Flagellin and related hook-associated proteins%3B E%3D4e-19 PFAM: PF00669%3B Bacterial flagellin N-terminus%3B E%3D2.8e-27 PF00700%3B Bacterial flagellin C-terminus%3B E%3D2.1e-17 gene gene2057 http://www.ncbi.nlm.nih.gov/gene/?term=RB3742 RB3744 RB3744 RB3744 1937999 1938292 - hypothetical protein best DB hits: PFAM: PF02617%3B Uncharacterized ACR%2C COG2127%3B E%3D0.12 gene gene2058 http://www.ncbi.nlm.nih.gov/gene/?term=RB3744 RB3745 RB3745 RB3745 1938018 1938329 + hypothetical protein gene gene2059 http://www.ncbi.nlm.nih.gov/gene/?term=RB3745 RB3746 RB3746 RB3746 1938122 1938352 + hypothetical protein gene gene2060 http://www.ncbi.nlm.nih.gov/gene/?term=RB3746 RB3747 RB3747 RB3747 1938177 1938407 - hypothetical protein gene gene2061 http://www.ncbi.nlm.nih.gov/gene/?term=RB3747 RB375 RB375 RB375 189235 190170 + hypothetical protein best DB hits: PFAM: PF01590%3B GAF domain%3B E%3D0.89 gene gene214 http://www.ncbi.nlm.nih.gov/gene/?term=RB375 RB3750 RB3750 fliS fliS 1938427 1938918 + flagellar protein FliS PMID: 10360571 best DB hits: BLAST: pir:F72286%3B flagellar protein FliS - Thermotoga maritima (strain%3B E%3D5e-05 COG: TM1179%3B COG1516 Flagellar protein%3B E%3D5e-06 PFAM: PF02561%3B Flagellar protein FliS%3B E%3D0.57 gene gene2062 http://www.ncbi.nlm.nih.gov/gene/?term=RB3750 RB3751 RB3751 RB3751 1938953 1940068 + UDP-glucose 4-epimerase-like protein PMID: 9174344 best DB hits: BLAST: gb:AAB84886.1%3B (AE000823) UDP-glucose 4-epimerase homolog%3B E%3D4e-65 pir:C69149%3B conserved hypothetical protein MTH380 - Methanobacterium%3B E%3D4e-65 gb:AAG18703.1%3B (AE004975) GDP-D-mannose dehydratase%3B Gmd%3B E%3D9e-61 COG: MTH380%3B COG0451 Nucleoside-diphosphate-sugar epimerases%3B E%3D4e-66 aq_1069%3B COG1087 UDP-glucose 4-epimerase%3B E%3D1e-26 PFAM: PF00106%3B short chain dehydrogenase%3B E%3D0.0021 PF01073%3B 3-beta hydroxysteroid dehydrogenase%3B E%3D1.3e-07 PF01370%3B NAD dependent epimerase/dehydratase%3B E%3D3.7e-88 gene gene2063 http://www.ncbi.nlm.nih.gov/gene/?term=RB3751 RB3753 RB3753 RB3753 1940053 1940232 + hypothetical protein gene gene2064 http://www.ncbi.nlm.nih.gov/gene/?term=RB3753 RB3755 RB3755 RB3755 1940193 1941626 + iduronate-2-sulfatase PMID: 8244397 PMID: 8325651 best DB hits: BLAST: gb:AAA16877.1%3B (L13329) iduronate-2-sulfatase [Homo sapiens]%3B E%3D2e-42 gb:AAB33747.1%3B iduronate-2-sulfatase%2C IDS {EC 3.1.6.13} [human%2C%3B E%3D1e-41 gb:AAA59192.1%3B (L04586) iduronate 2-sulfatase [Homo sapiens]%3B E%3D2e-40 COG: PA2333%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D6e-37 yejM%3B COG3083 Predicted hydrolase of alkaline phosphatase%3B E%3D9e-07 BS_yfnI%3B COG1368 Phosphoglycerol transferase and related proteins%2C%3B E%3D3e-06 PFAM: PF00884%3B Sulfatase%3B E%3D4.9e-29 gene gene2065 http://www.ncbi.nlm.nih.gov/gene/?term=RB3755 RB3758 RB3758 RB3758 1941623 1941730 - hypothetical protein gene gene2066 http://www.ncbi.nlm.nih.gov/gene/?term=RB3758 RB3760 RB3760 RB3760 1941894 1942169 - hypothetical protein gene gene2067 http://www.ncbi.nlm.nih.gov/gene/?term=RB3760 RB3762 RB3762 glpK glpK 1942292 1943911 + glycerol kinase PMID: 9972265 best DB hits: BLAST: pir:G75337%3B glycerol kinase - Deinococcus radiodurans (strain R1)%3B E%3D1e-169 pir:C72254%3B glycerol kinase - Thermotoga maritima (strain MSB8)%3B E%3D1e-155 swissprot:Q9X1E4%3B GLK2_THEMA GLYCEROL KINASE 2 (ATP:GLYCEROL%3B E%3D1e-155 COG: DR1928%3B COG0554 Glycerol kinase%3B E%3D1e-170 PFAM: PF00370%3B FGGY family of carbohydrate kinases%3B E%3D3.8e-107 PF02782%3B FGGY family of carbohydrate kinases%3B E%3D6.7e-83 gene gene2068 http://www.ncbi.nlm.nih.gov/gene/?term=RB3762 RB3763 RB3763 glpA glpA 1943977 1945569 + glycerol-3-phosphate dehydrogenase PMID: 7821823 best DB hits: BLAST: pir:C75448%3B glycerol-3-phosphate dehydrogenase - Deinococcus%3B E%3D1e-112 pir:C70130%3B glycerol-3-phosphate dehydrogenase%2C anaerobic (glpA)%3B E%3D4e-83 gb:AAF02807.1%3B AC009400_3 (AC009400) glycerol-3-phosphate%3B E%3D2e-82 COG: DR1019%3B COG0578 Glycerol-3-phosphate dehydrogenase%3B E%3D1e-113 PFAM: PF02737%3B 3-hydroxyacyl-CoA dehydrogenase%3B E%3D0.61 PF00070%3B Pyridine nucleotide-disulphide%3B E%3D0.036 PF02032%3B Phytoene dehydrogenase related%3B E%3D0.11 gene gene2069 http://www.ncbi.nlm.nih.gov/gene/?term=RB3763 RB3764 RB3764 RB3764 1945643 1946725 - signal peptide PMID: 11259647 gene gene2070 http://www.ncbi.nlm.nih.gov/gene/?term=RB3764 RB3765 RB3765 RB3765 1946653 1946946 - hypothetical protein gene gene2071 http://www.ncbi.nlm.nih.gov/gene/?term=RB3765 RB3767 RB3767 leuB leuB 1946949 1948043 + 3-isopropylmalate dehydrogenase PMID: 3110742 best DB hits: BLAST: pir:D75045%3B 3-isopropylmalate dehydrogenase (leub) PAB2424 -%3B E%3D2e-52 swissprot:O66607%3B LEU3_AQUAE 3-ISOPROPYLMALATE DEHYDROGENASE%3B E%3D6e-51 swissprot:Q9WZ26%3B LEU3_THEMA 3-ISOPROPYLMALATE DEHYDROGENASE%3B E%3D2e-49 COG: PAB2424%3B COG0473 Isocitrate/isopropylmalate dehydrogenase%3B E%3D2e-53 PFAM: PF00180%3B Isocitrate and isopropylmalate dehyd%3B E%3D6.3e-108 PF02376%3B CUT domain%3B E%3D0.32 gene gene2072 http://www.ncbi.nlm.nih.gov/gene/?term=RB3767 RB3768 RB3768 RB3768 1948093 1949406 + glucarate transporter PMID: 10762278 PMID: 7704254 best DB hits: BLAST: swissprot:P42237%3B GUDP_BACSU PROBABLE GLUCARATE TRANSPORTER%3B E%3D2e-33 swissprot:Q46916%3B GUDP_ECOLI PROBABLE GLUCARATE TRANSPORTER%3B E%3D2e-33 gb:AAG57903.1%3B AE005507_4 (AE005507) transport protein%3B E%3D4e-33 COG: BS_ycbE%3B COG0477 Permeases of the major facilitator superfamily%3B E%3D2e-34 PA1569%3B COG2271 Sugar phosphate permease%3B E%3D7e-12 AF0907%3B COG0477 Permeases of the major facilitator superfamily%3B E%3D1e-11 gene gene2073 http://www.ncbi.nlm.nih.gov/gene/?term=RB3768 RB377 RB377 RB377 190095 191966 + molybdopterin oxidoreductase%2C iron sulfur subunit PMID: 8635740 PMID: 1834669 best DB hits: BLAST: embl:CAC23825.1%3B (AL512979) molybdopterin oxidoreductase%2C iron%3B E%3D5e-26 gb:AAD37318.1%3B AF135170_9 (AF135170) dimethyl sulfoxide reductase%3B E%3D2e-25 swissprot:P18776%3B DMSB_ECOLI ANAEROBIC DIMETHYL SULFOXIDE%3B E%3D5e-25 COG: dmsB%3B COG0437 Fe-S-cluster-containing hydrogenase components 1%3B E%3D4e-26 TM0396%3B COG1142 Fe-S-cluster-containing hydrogenase components 2%3B E%3D5e-16 aq_067%3B COG0437 Fe-S-cluster-containing hydrogenase components 1%3B E%3D6e-16 PFAM: PF00037%3B 4Fe-4S binding domain%3B E%3D0.026 gene gene215 http://www.ncbi.nlm.nih.gov/gene/?term=RB377 RB3770 RB3770 RB3770 1949403 1950452 + NADH-dependent dyhydrogenase PMID: 10484179 best DB hits: BLAST: ddbj:BAB04967.1%3B (AP001511) NADH-dependent dyhydrogenase%3B E%3D3e-19 swissprot:O05389%3B YRBE_BACSU HYPOTHETICAL 37.8 KDA PROTEIN IN%3B E%3D2e-17 pir:G72391%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D9e-15 COG: BH1248%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D3e-20 PFAM: PF01408%3B Oxidoreductase%2C NAD-bi%3B E%3D1.5e-26 gene gene2074 http://www.ncbi.nlm.nih.gov/gene/?term=RB3770 RB3771 RB3771 RB3771 1950428 1951096 + hypothetical protein PMID: 9371463 best DB hits: BLAST: pir:B69206%3B conserved hypothetical protein MTH796 - Methanobacterium%3B E%3D1e-16 pir:S75497%3B hypothetical protein slr2121 - Synechocystis sp. (strain%3B E%3D6e-16 pir:D75064%3B hypothetical protein PAB0997 - Pyrococcus abyssi (strain%3B E%3D3e-12 COG: MTH796%3B COG1878 Uncharacterized ACR%2C predicted metal-dependent%3B E%3D1e-17 gene gene2075 http://www.ncbi.nlm.nih.gov/gene/?term=RB3771 RB3772 RB3772 RB3772 1951003 1951371 + hypothetical protein gene gene2076 http://www.ncbi.nlm.nih.gov/gene/?term=RB3772 RB3773 RB3773 RB3773 1951368 1952768 + hypothetical protein PMID: 8905231 best DB hits: BLAST: pir:S75596%3B hypothetical protein slr1342 - Synechocystis sp. (strain%3B E%3D2e-54 gb:AAF25989.1%3B AC013354_8 (AC013354) F15H18.21 [Arabidopsis%3B E%3D4e-54 gb:AAF78379.1%3B AC069551_12 (AC069551) T10O22.24 [Arabidopsis%3B E%3D1e-52 COG: slr1342%3B COG3395 Uncharacterized protein%3B E%3D2e-55 gene gene2077 http://www.ncbi.nlm.nih.gov/gene/?term=RB3773 RB3774 RB3774 RB3774 1952792 1953208 + hypothetical protein PMID: 10484179 best DB hits: BLAST: swissprot:P54540%3B YQJC_BACSU HYPOTHETICAL 15.7 KD PROTEIN IN%3B E%3D1e-15 ddbj:BAB05187.1%3B (AP001512) BH1468~~unknown conserved protein%3B E%3D4e-15 pir:A71452%3B glyoxalase I related protein PH0272 [similarity] -%3B E%3D2e-13 COG: BS_yqjC%3B COG0346 Lactoylglutathione lyase%3B E%3D9e-17 PFAM: PF00903%3B Glyoxalase/Bleomycin resistance pr%3B E%3D3.7e-09 gene gene2078 http://www.ncbi.nlm.nih.gov/gene/?term=RB3774 RB3775 RB3775 RB3775 1953217 1953744 + hypothetical protein gene gene2079 http://www.ncbi.nlm.nih.gov/gene/?term=RB3775 RB3777 RB3777 RB3777 1953826 1954701 + signal peptide gene gene2080 http://www.ncbi.nlm.nih.gov/gene/?term=RB3777 RB3779 RB3779 RB3779 1954717 1957809 - histidine protein kinase PMID: 10564511 best DB hits: BLAST: gb:AAD47812.1%3B (AF163841) histidine protein kinase%3B E%3D7e-40 pir:D82244%3B sensory box sensor histidine kinase VC1084 [imported] -%3B E%3D2e-38 pir:F83324%3B probable two-component sensor PA2571 [imported] -%3B E%3D2e-35 COG: VC1084%3B COG0642 Sensory transduction histidine kinases%3B E%3D2e-39 slr1759_2%3B COG2202 PAS/PAC domain%3B E%3D1e-18 BS_ykrQ_3%3B COG0642 Sensory transduction histidine kinases%3B E%3D1e-18 PFAM: PF00989%3B PAS domain%3B E%3D0.0067 PF00785%3B PAC motif%3B E%3D3.7e-09 PF00989%3B PAS domain%3B E%3D0.17 gene gene2081 http://www.ncbi.nlm.nih.gov/gene/?term=RB3779 RB378 RB378 narB narB 191963 194224 + nitrate reductase catalytic subunit PMID: 7868621 best DB hits: BLAST: ddbj:BAA74791.1%3B (AB017192) nitrate reductase catalytic subunit%3B E%3D1e-156 gb:AAB40292.1%3B (L49163) narB [Nostoc sp. PCC 7120]%3B E%3D1e-105 swissprot:P73448%3B NARB_SYNY3 NITRATE REDUCTASE ----- pir:%3B E%3D1e-105 COG: sll1454%3B COG0243 Anaerobic dehydrogenases%2C typically%3B E%3D1e-106 MTH1552%3B COG3383 Uncharacterized anaerobic dehydrogenase%3B E%3D5e-74 aq_217%3B COG0243 Anaerobic dehydrogenases%2C typically%3B E%3D4e-69 PFAM: PF00384%3B Molybdopterin oxidoreductases%3B E%3D1.2e-89 PF01568%3B Molydopterin dinucleotide bin%3B E%3D5.9e-29 gene gene216 http://www.ncbi.nlm.nih.gov/gene/?term=RB378 RB3783 RB3783 RB3783 1957694 1957876 - hypothetical protein gene gene2082 http://www.ncbi.nlm.nih.gov/gene/?term=RB3783 RB3784 RB3784 RB3784 1957869 1958324 - response regulator PMID: 10952301 best DB hits: BLAST: pir:F82244%3B response regulator VC1086 [imported] - Vibrio cholerae%3B E%3D2e-13 ddbj:BAA14000.1%3B (D89625) adenylate cyclase [Anabaena sp.]%3B E%3D1e-12 pir:G82244%3B response regulator VC1087 [imported] - Vibrio cholerae%3B E%3D1e-11 COG: VC1087_1%3B COG0784 CheY-like receiver domains%3B E%3D1e-12 PA2881%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D2e-10 Rv0981%3B COG0745 Response regulators consisting of a CheY-like%3B E%3D5e-09 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D5.1e-17 gene gene2083 http://www.ncbi.nlm.nih.gov/gene/?term=RB3784 RB3786 RB3786 RB3786 1958691 1961354 - hypothetical protein gene gene2084 http://www.ncbi.nlm.nih.gov/gene/?term=RB3786 RB3788 RB3788 RB3788 1961326 1962402 - ABC transporter ATP-binding protein PMID: 9767592 PMID: 10567266 best DB hits: BLAST: swissprot:P22040%3B Y415_SYNY3 HYPOTHETICAL ABC TRANSPORTER%3B E%3D3e-49 gb:AAC36155.1%3B (AF003632) PilH [Myxococcus xanthus]%3B E%3D2e-47 pir:H75288%3B ABC transporter ATP-binding protein - Deinococcus%3B E%3D5e-47 COG: sll0415%3B COG1131 ABC-type multidrug transport system%2C ATPase%3B E%3D2e-50 BH1054_2%3B COG0842 Permease component of an ABC-transporter%3B E%3D1e-33 PH0820%3B COG1131 ABC-type multidrug transport system%2C ATPase%3B E%3D3e-33 PFAM: PF02223%3B Thymidylate kinase%3B E%3D0.7 PF00005%3B ABC transporter%3B E%3D1.1e-46 gene gene2085 http://www.ncbi.nlm.nih.gov/gene/?term=RB3788 RB3789 RB3789 RB3789 1962399 1962878 - hypothetical protein gene gene2086 http://www.ncbi.nlm.nih.gov/gene/?term=RB3789 RB379 RB379 nirA nirA 194217 196058 + ferredoxin-nitrite reductase ferredoxin-dependent assimilatory nitrite reductase gene gene217 http://www.ncbi.nlm.nih.gov/gene/?term=RB379 RB3790 RB3790 RB3790 1962900 1963154 + hypothetical protein gene gene2087 http://www.ncbi.nlm.nih.gov/gene/?term=RB3790 RB3792 RB3792 RB3792 1963269 1964405 + sensor histidine kinase PMID: 11157922 PMID: 10360571 best DB hits: BLAST: pir:C72228%3B sensor histidine kinase HpkA - Thermotoga maritima%3B E%3D1e-16 swissprot:P23545%3B PHOR_BACSU ALKALINE PHOSPHATASE SYNTHESIS SENSOR%3B E%3D2e-16 gb:AAF70313.1%3B AF260326_2 (AF260326) SrrB [Staphylococcus aureus]%3B E%3D3e-16 COG: TM1654_2%3B COG0642 Sensory transduction histidine kinases%3B E%3D1e-17 PFAM: PF00512%3B His Kinase A (phosphoacceptor) doma%3B E%3D1.8e-16 PF02518%3B Histidine kinase-%2C DNA gyrase B-%2C p%3B E%3D2e-27 gene gene2088 http://www.ncbi.nlm.nih.gov/gene/?term=RB3792 RB3794 RB3794 RB3794 1964622 1968860 + ATP-binding protein PMID: 9252185 best DB hits: BLAST: pir:B64528%3B conserved hypothetical ATP-binding protein HP0066 -%3B E%3D2e-31 pir:A71979%3B hypothetical protein jhp0061 - Helicobacter pylori (strain%3B E%3D6e-31 ddbj:BAA33499.1%3B (AB003309) cdrA [Helicobacter pylori]%3B E%3D9e-29 COG: HP0066%3B COG1674 DNA segregation ATPase FtsK/SpoIIIE and related%3B E%3D2e-32 PFAM: PF00005%3B ABC transporter%3B E%3D0.0065 PF00004%3B ATPase associated with%3B E%3D0.24 PF01580%3B FtsK/SpoIIIE family%3B E%3D9.4e-24 gene gene2089 http://www.ncbi.nlm.nih.gov/gene/?term=RB3794 RB38 RB38 RB38 18331 18636 + hypothetical protein gene gene21 http://www.ncbi.nlm.nih.gov/gene/?term=RB38 RB380 RB380 cysJ cysJ 196136 197740 + sulfite reductase Catalyzes the reduction of sulfite to sulfide%2C an essential step in the anaerobic sulfate-respiration pathway gene gene218 http://www.ncbi.nlm.nih.gov/gene/?term=RB380 RB3800 RB3800 RB3800 1968891 1969253 + hypothetical protein gene gene2090 http://www.ncbi.nlm.nih.gov/gene/?term=RB3800 RB3802 RB3802 RB3802 1969262 1969456 - hypothetical protein gene gene2091 http://www.ncbi.nlm.nih.gov/gene/?term=RB3802 RB3804 RB3804 RB3804 1969437 1973225 + signal peptide gene gene2092 http://www.ncbi.nlm.nih.gov/gene/?term=RB3804 RB3808 RB3808 RB3808 1973057 1974532 + hypothetical protein gene gene2093 http://www.ncbi.nlm.nih.gov/gene/?term=RB3808 RB3809 RB3809 RB3809 1974492 1974647 - hypothetical protein gene gene2094 http://www.ncbi.nlm.nih.gov/gene/?term=RB3809 RB381 RB381 RB381 197737 197862 + hypothetical protein gene gene219 http://www.ncbi.nlm.nih.gov/gene/?term=RB381 RB3810 RB3810 RB3810 1974664 1975230 - hypothetical protein gene gene2095 http://www.ncbi.nlm.nih.gov/gene/?term=RB3810 RB3813 RB3813 RB3813 1975188 1975415 + hypothetical protein gene gene2096 http://www.ncbi.nlm.nih.gov/gene/?term=RB3813 RB3814 RB3814 RB3814 1975337 1975558 + hypothetical protein gene gene2097 http://www.ncbi.nlm.nih.gov/gene/?term=RB3814 RB3815 RB3815 RB3815 1975685 1976740 + hypothetical protein PMID: 8843436 best DB hits: BLAST: embl:CAB58305.1%3B (AL121854) hypothetical protein SCJ33.06c%3B E%3D1e-07 gb:AAF87158.1%3B AC002423_23 (AC002423) T23E23.6 [Arabidopsis%3B E%3D7e-05 gb:AAF87138.1%3B AC002423_3 (AC002423) T23E23.5 [Arabidopsis%3B E%3D5e-04 PFAM: PF01436%3B NHL repeat%3B E%3D0.094 gene gene2098 http://www.ncbi.nlm.nih.gov/gene/?term=RB3815 RB3816 RB3816 RB3816 1976747 1977658 + 3-hydroxyisobutyrate dehydrogenase PMID: 2647728 best DB hits: BLAST: pir:T08967%3B hypothetical protein F19B15.150 - Arabidopsis thaliana%3B E%3D3e-78 swissprot:O34948%3B YKWC_BACSU HYPOTHETICAL 30.7 KD PROTEIN IN%3B E%3D8e-71 gb:AAK06313.1%3B AE006450_6 (AE006450) 3-hydroxyisobutyrate%3B E%3D6e-70 COG: BS_ykwC%3B COG2084 3-hydroxyisobutyrate dehydrogenase and related%3B E%3D7e-72 gene gene2099 http://www.ncbi.nlm.nih.gov/gene/?term=RB3816 RB3817 RB3817 RB3817 1977722 1979134 - alginate o-acetyltransferase algI PMID: 10352233 PMID: 8636017 best DB hits: BLAST: pir:A83203%3B alginate o-acetyltransferase AlgI PA3548 [imported] -%3B E%3D3e-71 gb:AAB09781.1%3B (U50202) AlgI [Pseudomonas aeruginosa]%3B E%3D1e-70 gb:AAC04568.1%3B (AF027499) AlgI [Azotobacter vinelandii]%3B E%3D3e-69 COG: PA3548%3B COG1696 Predicted membrane protein involved in D-alanine%3B E%3D3e-72 gene gene2100 http://www.ncbi.nlm.nih.gov/gene/?term=RB3817 RB3818 RB3818 RB3818 1979131 1980195 - signal peptide gene gene2101 http://www.ncbi.nlm.nih.gov/gene/?term=RB3818 RB382 RB382 RB382 197889 198533 + hypothetical protein gene gene220 http://www.ncbi.nlm.nih.gov/gene/?term=RB382 RB3820 RB3820 pss pss 1980192 1981181 - CDP-diacylglycerol--serine O-phosphatidyltransferase PMID: 2830250 best DB hits: BLAST: pir:F71678%3B CDPdiacylglycerol--serine O-phosphatidyltransferase (EC%3B E%3D1e-12 pir:G82804%3B phosphatidyltransferase XF0442 [imported] - Xylella%3B E%3D2e-12 pir:T47268%3B phosphatidylserine synthase [imported] - Helicobacter%3B E%3D3e-12 COG: RP242%3B COG1183 Phosphatidylserine synthase%3B E%3D1e-13 Rv2612c%3B COG0558 Phosphatidylglycerophosphate synthase%3B E%3D1e-05 AF2044%3B COG1183 Phosphatidylserine synthase%3B E%3D1e-05 PFAM: PF01066%3B CDP-alcohol phosphatidyltrans%3B E%3D1.1e-08 gene gene2102 http://www.ncbi.nlm.nih.gov/gene/?term=RB3820 RB3822 RB3822 psd psd 1981139 1981891 - phosphatidylserine decarboxylase catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine gene gene2103 http://www.ncbi.nlm.nih.gov/gene/?term=RB3822 RB3824 RB3824 nadB nadB 1982259 1983941 + L-aspartate oxidase PMID: 2187483 best DB hits: BLAST: pir:T51421%3B L-aspartate oxidase-like protein - Arabidopsis thaliana%3B E%3D3e-91 pir:T36393%3B L-aspartate oxidase - Streptomyces coelicolor -----%3B E%3D5e-90 swissprot:Q51363%3B NADB_PSEAE L-ASPARTATE OXIDASE (QUINOLINATE%3B E%3D2e-86 COG: PA0761%3B COG0029 Aspartate oxidase%3B E%3D1e-87 Rv1552%3B COG1053 Succinate dehydrogenase/fumarate reductase%2C%3B E%3D4e-69 XF1924%3B COG0029 Aspartate oxidase%3B E%3D1e-68 PFAM: PF01134%3B Glucose inhibited division pro%3B E%3D0.2 PF01494%3B FAD binding domain%3B E%3D0.011 PF00732%3B GMC oxidoreductases%3B E%3D0.12 gene gene2104 http://www.ncbi.nlm.nih.gov/gene/?term=RB3824 RB3826 RB3826 oprP oprP 1984011 1985525 - porin PMID: 1697017 PMID: 3017428 best DB hits: BLAST: swissprot:P05695%3B PORP_PSEAE PORIN P PRECURSOR (OUTER MEMBRANE%3B E%3D4e-16 pir:S11793%3B porin P precursor%2C phosphate-specific - Pseudomonas%3B E%3D5e-16 pir:D82740%3B polyphosphate-selective porin O XF0975 [imported] -%3B E%3D1e-11 gene gene2105 http://www.ncbi.nlm.nih.gov/gene/?term=RB3826 RB3828 RB3828 RB3828 1985536 1987938 + hypothetical protein gene gene2106 http://www.ncbi.nlm.nih.gov/gene/?term=RB3828 RB383 RB383 RB383 198058 198732 - hypothetical protein gene gene221 http://www.ncbi.nlm.nih.gov/gene/?term=RB383 RB3830 RB3830 RB3830 1987949 1988593 + hypothetical protein PMID: 10780382 best DB hits: BLAST: ddbj:BAB16192.1%3B (AP002086) hypothetical protein [Agrobacterium%3B E%3D8e-23 embl:CAC14575.1%3B (AJ295059) arylesterase [Sinorhizobium%3B E%3D2e-20 gb:AAD02335.1%3B (AF044683) arylesterase [Agrobacterium%3B E%3D3e-18 gene gene2107 http://www.ncbi.nlm.nih.gov/gene/?term=RB3830 RB3831 RB3831 RB3831 1988666 1988788 - hypothetical protein gene gene2108 http://www.ncbi.nlm.nih.gov/gene/?term=RB3831 RB3832 RB3832 RB3832 1988949 1989125 - hypothetical protein gene gene2109 http://www.ncbi.nlm.nih.gov/gene/?term=RB3832 RB3833 RB3833 RB3833 1989195 1989662 + hypothetical protein gene gene2110 http://www.ncbi.nlm.nih.gov/gene/?term=RB3833 RB3835 RB3835 RB3835 1989687 1989839 + hypothetical protein gene gene2111 http://www.ncbi.nlm.nih.gov/gene/?term=RB3835 RB3836 RB3836 RB3836 1989848 1990474 + signal peptide gene gene2112 http://www.ncbi.nlm.nih.gov/gene/?term=RB3836 RB3838 RB3838 RB3838 1990530 1990835 + signal peptide gene gene2113 http://www.ncbi.nlm.nih.gov/gene/?term=RB3838 RB384 RB384 kptA kptA 198704 199000 - RNA 2-phosphotransferase PMID: 9915792 best DB hits: BLAST: swissprot:Q9I778%3B KPTA_PSEAE PROBABLE RNA 2'-PHOSPHOTRANSFERASE%3B E%3D3e-10 pir:S56556%3B hypothetical 24.6K protein (iadA-mcrD intergenic region)%3B E%3D6e-09 swissprot:P39380%3B KPTA_ECOLI RNA 2'-PHOSPHOTRANSFERASE%3B E%3D6e-09 COG: PA0054%3B COG1859 Uncharacterized ACR%3B E%3D3e-11 PFAM: PF01885%3B Domain of unknown function DUF60%3B E%3D6.1e-16 gene gene222 http://www.ncbi.nlm.nih.gov/gene/?term=RB384 RB3840 RB3840 RB3840 1990986 1991492 + dioxygenase superfamily protein PMID: 9168618 best DB hits: PFAM: PF00903%3B Glyoxalase/Bleomycin resistance pr%3B E%3D5.3e-10 gene gene2114 http://www.ncbi.nlm.nih.gov/gene/?term=RB3840 RB3841 RB3841 RB3841 1991467 1991607 + hypothetical protein gene gene2115 http://www.ncbi.nlm.nih.gov/gene/?term=RB3841 RB3842 RB3842 RB3842 1991615 1993741 - dipeptidyl peptidase IV PMID: 9524216 PMID: 95147689 best DB hits: BLAST: gb:AAC46184.1%3B (AF026511) dipeptidyl peptidase IV [Porphyromonas%3B E%3D2e-59 ddbj:BAA28265.1%3B (AB008194) DPP IV [Porphyromonas gingivalis]%3B E%3D5e-59 pir:S66261%3B X-Pro dipeptidyl-peptidase (EC 3.4.14.11) -%3B E%3D5e-48 COG: YHR028c%3B COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases%3B E%3D8e-26 PFAM: PF00930%3B Dipeptidyl peptidase IV (DPP IV)%3B E%3D7.9e-29 PF00326%3B Prolyl oligopeptidase%3B E%3D0.39 gene gene2116 http://www.ncbi.nlm.nih.gov/gene/?term=RB3842 RB3845 RB3845 RB3845 1993863 1993979 + hypothetical protein gene gene2117 http://www.ncbi.nlm.nih.gov/gene/?term=RB3845 RB3846 RB3846 RB3846 1994029 1994148 + hypothetical protein gene gene2118 http://www.ncbi.nlm.nih.gov/gene/?term=RB3846 RB3847 RB3847 RB3847 1994141 1994263 - hypothetical protein gene gene2119 http://www.ncbi.nlm.nih.gov/gene/?term=RB3847 RB3848 RB3848 RB3848 1994257 1994538 - hypothetical protein gene gene2120 http://www.ncbi.nlm.nih.gov/gene/?term=RB3848 RB3849 RB3849 RB3849 1994427 1996340 + Aryl-sulphate sulphohydrolase PMID: 10336424 best DB hits: BLAST: pir:E64903%3B arylsulfatase homolog b1498 - Escherichia coli -----%3B E%3D1e-26 swissprot:P77318%3B YDEN_ECOLI SULFATASE YDEN PRECURSOR%3B E%3D1e-26 gb:AAF30402.1%3B AF109924_1 (AF109924) sulfatase 1 precursor [Helix%3B E%3D1e-26 COG: ydeN%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D1e-27 PFAM: PF00884%3B Sulfatase%3B E%3D1.2e-31 gene gene2121 http://www.ncbi.nlm.nih.gov/gene/?term=RB3849 RB3851 RB3851 RB3851 1996433 1996660 - hypothetical protein gene gene2122 http://www.ncbi.nlm.nih.gov/gene/?term=RB3851 RB3854 RB3854 RB3854 1996680 1997117 + hypothetical protein PMID: 10952301 best DB hits: BLAST: pir:D82278%3B hypothetical protein VC0802 [imported] - Vibrio cholerae%3B E%3D2e-24 pir:C83100%3B hypothetical protein PA4364 [imported] - Pseudomonas%3B E%3D3e-15 gene gene2123 http://www.ncbi.nlm.nih.gov/gene/?term=RB3854 RB3856 RB3856 RB3856 1997265 1997840 + hypothetical protein gene gene2124 http://www.ncbi.nlm.nih.gov/gene/?term=RB3856 RB3858 RB3858 RB3858 1997834 1998016 - hypothetical protein gene gene2125 http://www.ncbi.nlm.nih.gov/gene/?term=RB3858 RB386 RB386 RB386 199036 202650 - saframycin Mx1 synthetase B PMID: 8936303 best DB hits: BLAST: pir:T18551%3B saframycin Mx1 synthetase B - Myxococcus xanthus -----%3B E%3D1e-112 pir:T34918%3B polyketide synthase - Streptomyces coelicolor -----%3B E%3D1e-102 pir:H83343%3B probable non-ribosomal peptide synthetase PA2424%3B E%3D1e-101 COG: PA2424_1%3B COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid%3B E%3D1e-102 Rv1529%3B COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases%3B E%3D7e-83 Ta1189%3B COG0156 7-keto-8-aminopelargonate synthetase and related%3B E%3D6e-62 PFAM: PF00501%3B AMP-binding enzyme%3B E%3D2.2e-08 PF00550%3B Phosphopantetheine attachment si%3B E%3D1.3e-09 PF02490%3B Aminolevulinic acid synthase dom%3B E%3D0.0015 gene gene223 http://www.ncbi.nlm.nih.gov/gene/?term=RB386 RB3860 RB3860 RB3860 1998008 1998445 + hypothetical protein gene gene2126 http://www.ncbi.nlm.nih.gov/gene/?term=RB3860 RB3864 RB3864 RB3864 1998657 1999049 + hypothetical protein gene gene2127 http://www.ncbi.nlm.nih.gov/gene/?term=RB3864 RB3865 RB3865 RB3865 1999065 1999601 + acetyltransferase PMID: 10567266 best DB hits: BLAST: ddbj:BAB04222.1%3B (AP001508) BH0503~~unknown conserved protein in%3B E%3D1e-17 pir:G75479%3B hypothetical protein - Deinococcus radiodurans (strain%3B E%3D1e-15 pir:E82435%3B hypothetical protein VCA0631 [imported] - Vibrio%3B E%3D1e-11 COG: BH0503%3B COG0454 Histone acetyltransferase HPA2 and related%3B E%3D1e-18 PFAM: PF00583%3B Acetyltransferase (GNAT) family%3B E%3D3.9e-07 gene gene2128 http://www.ncbi.nlm.nih.gov/gene/?term=RB3865 RB3866 RB3866 RB3866 1999696 2000493 - hypothetical protein gene gene2129 http://www.ncbi.nlm.nih.gov/gene/?term=RB3866 RB3867 RB3867 RB3867 2000435 2001289 + signal peptide best DB hits: BLAST: pir:F75494%3B hypothetical protein - Deinococcus radiodurans (strain%3B E%3D0.55 PFAM: PF01260%3B AP endonuclease 1%3B E%3D0.41 gene gene2130 http://www.ncbi.nlm.nih.gov/gene/?term=RB3867 RB3868 RB3868 RB3868 2001286 2001663 - hypothetical protein gene gene2131 http://www.ncbi.nlm.nih.gov/gene/?term=RB3868 RB3870 RB3870 RB3870 2001345 2001644 - hypothetical protein gene gene2132 http://www.ncbi.nlm.nih.gov/gene/?term=RB3870 RB3871 RB3871 RB3871 2001638 2002954 + transposase PMID: 10762236 best DB hits: BLAST: gb:AAD38020.1%3B AF148127_1 (AF148127) transposase [Porphyromonas%3B E%3D8e-13 ddbj:BAA83477.1%3B (AB009361) transposase [Porphyromonas%3B E%3D1e-12 ddbj:BAA92234.1%3B (AB031551) transposase [Bacillus subtilis]%3B E%3D3e-10 COG: BH0691%3B COG3385 Predicted transposase%3B E%3D2e-10 PFAM: PF01609%3B Transposase (IS4 family)%3B E%3D6.2e-08 gene gene2133 http://www.ncbi.nlm.nih.gov/gene/?term=RB3871 RB3873 RB3873 RB3873 2002995 2003252 + hypothetical protein gene gene2134 http://www.ncbi.nlm.nih.gov/gene/?term=RB3873 RB3876 RB3876 arsA arsA 2003332 2004822 + arylsulfatase PMID: 7910580 PMID: 1572648 best DB hits: BLAST: ddbj:BAA04535.1%3B (D17629) N-acetylgalactosamine 6-sulfate%3B E%3D3e-38 embl:CAA36398.1%3B (X52150) arylsulphatase a [Homo sapiens]%3B E%3D3e-35 gb:AAB03341.1%3B (U62317) arylsulfatase A [Homo sapiens]%3B E%3D3e-35 COG: ydeN%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D8e-29 PFAM: PF00884%3B Sulfatase%3B E%3D3.2e-49 gene gene2135 http://www.ncbi.nlm.nih.gov/gene/?term=RB3876 RB3877 RB3877 aslA aslA 2004910 2006460 - Aryl-sulfate sulphohydrolase PMID: 2476654 PMID: 2303452 PMID: 89384447 best DB hits: BLAST: gb:AAF04318.1%3B (AF065159) arylsulfatase [Bradyrhizobium%3B E%3D2e-50 gb:AAG58993.1%3B AE005611_3 (AE005611) arylsulfatase [Escherichia%3B E%3D4e-32 swissprot:P25549%3B ASLA_ECOLI ARYLSULFATASE (ARYL-SULFATE%3B E%3D6e-32 COG: aslA%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D5e-33 PFAM: PF00884%3B Sulfatase%3B E%3D6.1e-68 gene gene2136 http://www.ncbi.nlm.nih.gov/gene/?term=RB3877 RB388 RB388 RB388 202649 202828 + hypothetical protein gene gene224 http://www.ncbi.nlm.nih.gov/gene/?term=RB388 RB3880 RB3880 RB3880 2006705 2006953 - hypothetical protein gene gene2137 http://www.ncbi.nlm.nih.gov/gene/?term=RB3880 RB3881 RB3881 RB3881 2007036 2007194 - hypothetical protein gene gene2138 http://www.ncbi.nlm.nih.gov/gene/?term=RB3881 RB3882 RB3882 RB3882 2007217 2007369 - hypothetical protein gene gene2139 http://www.ncbi.nlm.nih.gov/gene/?term=RB3882 RB3883 RB3883 RB3883 2007344 2007682 - hypothetical protein gene gene2140 http://www.ncbi.nlm.nih.gov/gene/?term=RB3883 RB3884 RB3884 pyrH pyrH 2007712 2008764 + uridylate kinase PMID: 10607910 best DB hits: BLAST: ddbj:BAB01794.1%3B (AB026654) contains similarity to uridylate%3B E%3D9e-63 swissprot:P74457%3B PYRH_SYNY3 URIDYLATE KINASE (UK) (URIDINE%3B E%3D2e-61 swissprot:O66929%3B PYRH_AQUAE URIDYLATE KINASE (UK) (URIDINE%3B E%3D7e-61 COG: sll0144%3B COG0528 Uridylate kinase%3B E%3D2e-62 PFAM: PF00696%3B Amino acid kinase%3B E%3D1.1e-50 gene gene2141 http://www.ncbi.nlm.nih.gov/gene/?term=RB3884 RB3886 RB3886 FRR FRR 2008765 2009367 + ribosome recycling factor PMID: 8183897 PMID: 8755892 best DB hits: BLAST: ddbj:BAB06143.1%3B (AP001515) ribosome recycling factor [Bacillus%3B E%3D1e-37 swissprot:P81101%3B RRF_BACSU RIBOSOME RECYCLING FACTOR (RIBOSOME%3B E%3D5e-36 swissprot:Q10794%3B RRF_MYCTU RIBOSOME RECYCLING FACTOR (RIBOSOME%3B E%3D5e-35 COG: BH2424%3B COG0233 Ribosome recycling factor%3B E%3D1e-38 PFAM: PF01765%3B Ribosome recycling factor%3B E%3D2.5e-74 gene gene2142 http://www.ncbi.nlm.nih.gov/gene/?term=RB3886 RB3888 RB3888 RB3888 2009374 2011059 + hypothetical protein gene gene2143 http://www.ncbi.nlm.nih.gov/gene/?term=RB3888 RB3890 RB3890 RB3890 2011177 2011554 - hypothetical protein gene gene2144 http://www.ncbi.nlm.nih.gov/gene/?term=RB3890 RB3891 RB3891 proC proC 2011605 2012435 - pyrroline-5-carboxylate reductase PMID: 6296787 best DB hits: BLAST: swissprot:Q04708%3B PROC_PEA PYRROLINE-5-CARBOXYLATE REDUCTASE%3B E%3D4e-49 swissprot:P54904%3B PROC_ARATH PYRROLINE-5-CARBOXYLATE REDUCTASE%3B E%3D4e-49 swissprot:P17817%3B PROC_SOYBN PYRROLINE-5-CARBOXYLATE REDUCTASE%3B E%3D8e-48 COG: slr0661%3B COG0345 Pyrroline-5-carboxylate reductase%3B E%3D3e-45 PFAM: PF01089%3B Delta 1-pyrroline-5-carboxylate redu%3B E%3D6.5e-101 gene gene2145 http://www.ncbi.nlm.nih.gov/gene/?term=RB3891 RB3893 RB3893 RB3893 2012479 2013987 - serine/threonine protein kinase PMID: 11337471 best DB hits: BLAST: pir:T36717%3B probable serinethreonine protein kinase - Streptomyces%3B E%3D1e-22 gb:AAK05985.1%3B AE006418_5 (AE006418) serinethreonine protein%3B E%3D1e-22 embl:CAA10713.1%3B (AJ132604) hypothetical protein [Lactococcus%3B E%3D2e-22 COG: BH2504_1%3B COG0515 Serine/threonine protein kinases%3B E%3D1e-21 PFAM: PF00069%3B Protein kinase domain%3B E%3D3.4e-39 gene gene2146 http://www.ncbi.nlm.nih.gov/gene/?term=RB3893 RB3895 RB3895 inlE inlE 2013984 2015186 - internalin PMID: 9125538 PMID: 1905979 best DB hits: BLAST: gb:AAB67969.1%3B (U77368) internalin [Listeria monocytogenes]%3B E%3D1e-28 embl:CAA07457.1%3B (AJ007319) internalin H [Listeria monocytogenes]%3B E%3D1e-28 embl:CAC20635.1%3B (AJ012385) internalin D [Listeria monocytogenes]%3B E%3D1e-28 PFAM: PF00560%3B Leucine Rich Repeat%3B E%3D0.24 gene gene2147 http://www.ncbi.nlm.nih.gov/gene/?term=RB3895 RB3898 RB3898 PCP PCP 2015236 2015967 - pyrrolidone-carboxylate peptidase PMID: 7909543 best DB hits: BLAST: swissprot:P42673%3B PCP_PSEFL PYRROLIDONE-CARBOXYLATE PEPTIDASE%3B E%3D3e-18 swissprot:O73944%3B PCP_PYRFU PYRROLIDONE-CARBOXYLATE PEPTIDASE%3B E%3D3e-18 pir:D75057%3B pyroglutamyl-peptidase I (EC 3.4.19.3) PAB1419%3B E%3D3e-17 COG: PAB1419%3B COG2039 Pyrrolidone-carboxylate peptidase (N-terminal%3B E%3D3e-18 PFAM: PF01470%3B Pyroglutamyl peptidase%3B E%3D1.9e-15 gene gene2148 http://www.ncbi.nlm.nih.gov/gene/?term=RB3898 RB3899 RB3899 RB3899 2016038 2018047 - signal peptide gene gene2149 http://www.ncbi.nlm.nih.gov/gene/?term=RB3899 RB39 RB39 RB39 18668 19417 - transposase PMID: 2820936 best DB hits: BLAST: pir:S46409%3B hypothetical protein - Aeromonas salmonicida -----%3B E%3D2e-29 embl:CAA05973.1%3B (AJ003194) transposase [Lactobacillus casei]%3B E%3D2e-27 swissprot:P37247%3B TRA4_BACFR TRANSPOSASE FOR INSERTION SEQUENCE%3B E%3D2e-26 COG: NMB0225%3B COG2826 Transposase%2C IS30 family%3B E%3D3e-27 PFAM: PF00665%3B Integrase core domain%3B E%3D2.4e-16 gene gene22 http://www.ncbi.nlm.nih.gov/gene/?term=RB39 RB390 RB390 RB390 202881 204269 + alkylhalidase PMID: 10094695 best DB hits: BLAST: gb:AAG38844.1%3B (AY010120) reductasehalogenase%3B E%3D9e-35 pir:T30590%3B alkylhalidase homolog - Amycolatopsis orientalis -----%3B E%3D2e-29 pir:T17419%3B probable alkylhalidase (EC 3.8.1.1) pltA - Pseudomonas%3B E%3D7e-29 COG: aq_104%3B COG0644 Dehydrogenases (flavoproteins)%3B E%3D2e-07 PFAM: PF01134%3B Glucose inhibited division prot%3B E%3D0.14 PF02254%3B KTN NAD-binding domain%3B E%3D0.15 PF01494%3B FAD binding domain%3B E%3D0.00011 gene gene225 http://www.ncbi.nlm.nih.gov/gene/?term=RB390 RB3902 RB3902 RB3902 2018093 2018329 - hypothetical protein gene gene2150 http://www.ncbi.nlm.nih.gov/gene/?term=RB3902 RB3904 RB3904 RB3904 2018399 2018581 - hypothetical protein gene gene2151 http://www.ncbi.nlm.nih.gov/gene/?term=RB3904 RB3905 RB3905 RB3905 2018601 2018717 + hypothetical protein gene gene2152 http://www.ncbi.nlm.nih.gov/gene/?term=RB3905 RB3906 RB3906 RB3906 2018695 2019081 + hypothetical protein PMID: 8905231 best DB hits: BLAST: pir:S76180%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D1e-41 gb:AAD29263.1%3B AF107093_8 (AF107093) unknown [Rhodobacter%3B E%3D7e-32 pir:B70799%3B hypothetical protein Rv3745c - Mycobacterium%3B E%3D6e-12 gene gene2153 http://www.ncbi.nlm.nih.gov/gene/?term=RB3906 RB3908 RB3908 RB3908 2019281 2019730 - hypothetical protein PMID: 10567266 best DB hits: BLAST: pir:C75256%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D3e-46 gb:AAG48795.1%3B AF332432_1 (AF332432) unknown protein [Arabidopsis%3B E%3D3e-40 pir:A82330%3B conserved hypothetical protein VC0373 [imported] -%3B E%3D4e-38 COG: DR2598%3B COG0432 Uncharacterized ACR%3B E%3D3e-47 PFAM: PF01894%3B Uncharacterised protein family UPF00%3B E%3D5.6e-43 gene gene2154 http://www.ncbi.nlm.nih.gov/gene/?term=RB3908 RB3911 RB3911 RB3911 2019984 2020625 - hypothetical protein gene gene2155 http://www.ncbi.nlm.nih.gov/gene/?term=RB3911 RB3913 RB3913 RB3913 2020731 2023433 + collagenase PMID: 1317840 best DB hits: BLAST: pir:C75313%3B probable proteinase - Deinococcus radiodurans (strain%3B E%3D1e-136 pir:D69102%3B collagenase - Methanobacterium thermoautotrophicum%3B E%3D2e-58 pir:F64895%3B hypothetical protein b1435 - Escherichia coli -----%3B E%3D9e-53 COG: DR2130%3B COG0826 Protease related to collagenase%3B E%3D1e-137 PFAM: PF01045%3B EIAV glycoprotein%2C gp45%3B E%3D0.52 PF01136%3B Peptidase U32%3B E%3D1.9e-50 PF00452%3B Apoptosis regulator proteins%2C B%3B E%3D0.0056 gene gene2156 http://www.ncbi.nlm.nih.gov/gene/?term=RB3913 RB3915 RB3915 dpoL dpoL 2023447 2024937 - DNA polymerase related protein PMID: 2119891 best DB hits: BLAST: embl:CAB77286.1%3B (AL160312) DNA polymerase related%3B E%3D9e-39 gb:AAD56917.1%3B AF180145_9 (AF180145) hypothetical protein%3B E%3D1e-30 embl:CAB56297.1%3B (AJ249385) hypothetical protein [Pseudomonas%3B E%3D3e-30 COG: aq_1693%3B COG1573 Uracil-DNA glycosylase%3B E%3D5e-21 gene gene2157 http://www.ncbi.nlm.nih.gov/gene/?term=RB3915 RB3916 RB3916 RB3916 2024956 2026728 - hypothetical protein gene gene2158 http://www.ncbi.nlm.nih.gov/gene/?term=RB3916 RB3917 RB3917 RB3917 2026822 2026956 - hypothetical protein gene gene2159 http://www.ncbi.nlm.nih.gov/gene/?term=RB3917 RB3919 RB3919 RB3919 2026982 2031835 + signal peptide PMID: 11481431 best DB hits: BLAST: pir:C75617%3B probable oxidoreductase - Deinococcus radiodurans%3B E%3D0.004 pir:F75417%3B L-sorbosone dehydrogenase - Deinococcus radiodurans%3B E%3D0.14 pir:S31940%3B starch-degrading enzyme - Clostridium acetobutylicum%3B E%3D0.67 COG: DRA0203%3B COG2133 Glucose/sorbosone dehydrogenases%3B E%3D4e-04 PFAM: PF00034%3B Cytochrome c%3B E%3D0.049 gene gene2160 http://www.ncbi.nlm.nih.gov/gene/?term=RB3919 RB392 RB392 RB392 204269 204925 + phosphatase PMID: 7826004 best DB hits: BLAST: swissprot:P77475%3B YQAB_ECOLI HYPOTHETICAL 20.8 KDA PROTEIN IN%3B E%3D7e-26 gb:AAG57799.1%3B AE005497_10 (AE005497) phosphatase%3B E%3D8e-26 pir:D82431%3B CbbY family protein VCA0662 [imported] - Vibrio cholerae%3B E%3D1e-25 COG: yqaB%3B COG0637 Predicted phosphatase/phosphohexomutase%3B E%3D7e-27 DR0729%3B COG0546 Predicted phosphatases%3B E%3D1e-09 yieH%3B COG0637 Predicted phosphatase/phosphohexomutase%3B E%3D9e-09 PFAM: PF00702%3B haloacid dehalogenase-like hydro%3B E%3D8.5e-24 gene gene226 http://www.ncbi.nlm.nih.gov/gene/?term=RB392 RB3922 RB3922 RB3922 2032156 2032302 - signal peptide gene gene2161 http://www.ncbi.nlm.nih.gov/gene/?term=RB3922 RB3923 RB3923 RB3923 2032286 2032453 - hypothetical protein gene gene2162 http://www.ncbi.nlm.nih.gov/gene/?term=RB3923 RB3924 RB3924 RB3924 2032450 2033421 - hypothetical protein PMID: 9639930 best DB hits: BLAST: swissprot:P46218%3B Y31K_SULAC HYPOTHETICAL 31.5 KD PROTEIN -----%3B E%3D6e-06 swissprot:O34940%3B YVRE_BACSU HYPOTHETICAL 33.2 KD PROTEIN IN%3B E%3D7e-05 ddbj:BAA13046.1%3B (D86217) regucalcin [Mus musculus]%3B E%3D0.76 COG: BS_yvrE%3B COG3386 Uncharacterized protein%3B E%3D7e-06 gene gene2163 http://www.ncbi.nlm.nih.gov/gene/?term=RB3924 RB3925 RB3925 RB3925 2033382 2033534 - hypothetical protein gene gene2164 http://www.ncbi.nlm.nih.gov/gene/?term=RB3925 RB3926 RB3926 RB3926 2033554 2033811 - hypothetical protein gene gene2165 http://www.ncbi.nlm.nih.gov/gene/?term=RB3926 RB3928 RB3928 RB3928 2033789 2034310 + hypothetical protein gene gene2166 http://www.ncbi.nlm.nih.gov/gene/?term=RB3928 RB3929 RB3929 RB3929 2034243 2034407 - hypothetical protein gene gene2167 http://www.ncbi.nlm.nih.gov/gene/?term=RB3929 RB393 RB393 RB393 205043 207007 - peptidase best DB hits: BLAST: ddbj:BAB09011.1%3B (AB012239) gene_id:K11J9.20~~unknown protein%3B E%3D0.11 pir:T35304%3B probable peptidase - Streptomyces coelicolor -----%3B E%3D0.19 ddbj:BAA76932.1%3B (AB024705) fls485 [Homo sapiens]%3B E%3D0.83 gene gene227 http://www.ncbi.nlm.nih.gov/gene/?term=RB393 RB3930 RB3930 RB3930 2034253 2034417 - hypothetical protein gene gene2168 http://www.ncbi.nlm.nih.gov/gene/?term=RB3930 RB3932 RB3932 tolQ tolQ 2034427 2035200 + tolQ protein PMID: 8331075 PMID: 10348868 PMID: 8921895 best DB hits: BLAST: pir:G83274%3B probable tolQ-type transport protein PA2983 [imported] -%3B E%3D7e-13 pir:H71686%3B tolQ protein (tolQ) RP309 - Rickettsia prowazekii%3B E%3D1e-10 pir:G82187%3B biopolymer transport protein ExbB-related protein VC1547%3B E%3D1e-10 COG: PA2983%3B COG0811 Biopolymer transport proteins%3B E%3D7e-14 PFAM: PF01618%3B MotA/TolQ/ExbB proton channel famil%3B E%3D4e-28 gene gene2169 http://www.ncbi.nlm.nih.gov/gene/?term=RB3932 RB3933 RB3933 RB3933 2035200 2035637 + hypothetical protein PMID: 11743194 best DB hits: BLAST: swissprot:P18784%3B EXBD_ECOLI BIOPOLYMER TRANSPORT EXBD PROTEIN%3B E%3D0.010 swissprot:Q05606%3B EXBD_PSEPU BIOPOLYMER TRANSPORT EXBD PROTEIN%3B E%3D0.35 embl:CAB50919.1%3B (AJ243354) hypothetical protein [Pseudomonas%3B E%3D0.35 COG: exbD%3B COG0848 Biopolymer transport protein%3B E%3D0.001 gene gene2170 http://www.ncbi.nlm.nih.gov/gene/?term=RB3933 RB3934 RB3934 RB3934 2035580 2036125 + hypothetical protein best DB hits: BLAST: swissprot:Q9ZHV9%3B EXD2_VIBCH BIOPOLYMER TRANSPORT EXBD2 PROTEIN%3B E%3D0.57 PFAM: PF02472%3B Biopolymer transport protein ExbD/To%3B E%3D0.0017 gene gene2171 http://www.ncbi.nlm.nih.gov/gene/?term=RB3934 RB3935 RB3935 RB3935 2036074 2036241 - hypothetical protein gene gene2172 http://www.ncbi.nlm.nih.gov/gene/?term=RB3935 RB3936 RB3936 trpG trpG 2036289 2037023 + anthranilate synthase component II PMID: 2656657 PMID: 6283099 PMID: 2404959 best DB hits: BLAST: pir:B82835%3B anthranilate synthase component II XF0211 [imported] -%3B E%3D4e-40 swissprot:P06193%3B PABA_SALTY PARA-AMINOBENZOATE SYNTHASE GLUTAMINE%3B E%3D4e-39 pir:NNPS2P%3B anthranilate synthase (EC 4.1.3.27) component II%3B E%3D6e-39 COG: XF0211%3B COG0512 Anthranilate/para-aminobenzoate synthases component%3B E%3D3e-41 TM0141_1%3B COG0512 Anthranilate/para-aminobenzoate synthases%3B E%3D7e-37 DR1766%3B COG0512 Anthranilate/para-aminobenzoate synthases component%3B E%3D3e-36 PFAM: PF00117%3B Glutamine amidotransferase clas%3B E%3D0.00015 gene gene2173 http://www.ncbi.nlm.nih.gov/gene/?term=RB3936 RB3938 RB3938 RB3938 2037020 2037607 + hypothetical protein best DB hits: PFAM: PF01522%3B Polysaccharide deacetylase%3B E%3D0.37 gene gene2174 http://www.ncbi.nlm.nih.gov/gene/?term=RB3938 RB394 RB394 RB394 207055 207192 - hypothetical protein gene gene228 http://www.ncbi.nlm.nih.gov/gene/?term=RB394 RB3940 RB3940 RB3940 2037604 2038566 + hypothetical protein best DB hits: BLAST: gb:AAC27019.1%3B (AF032114) unknown [Methylobacterium extorquens]%3B E%3D2e-16 pir:B75078%3B hypothetical protein PAB1694 - Pyrococcus abyssi (strain%3B E%3D5e-16 pir:F71066%3B hypothetical protein PH1228 - Pyrococcus horikoshii%3B E%3D2e-15 COG: PAB1694%3B COG1907 Predicted archaeal sugar kinases%3B E%3D5e-17 gene gene2175 http://www.ncbi.nlm.nih.gov/gene/?term=RB3940 RB3942 RB3942 spoU spoU 2038563 2039096 - SpoU rRNA methylase PMID: 9321663 PMID: 8266080 PMID: 8265370 best DB hits: BLAST: gb:AAB02738.1%3B (U58864) CspR [Bacillus subtilis]%3B E%3D2e-29 swissprot:P32813%3B YGL3_BACST HYPOTHETICAL 18.2 KD PROTEIN IN GLDA%3B E%3D4e-29 pir:G69608%3B rRNA methylase homolog cspR - Bacillus subtilis -----%3B E%3D6e-29 COG: BS_cspR%3B COG0219 Predicted rRNA methylase (SpoU class)%3B E%3D5e-30 slr1673%3B COG0566 rRNA methylases%3B E%3D6e-07 PFAM: PF00588%3B SpoU rRNA Methylase%3B E%3D8e-34 gene gene2176 http://www.ncbi.nlm.nih.gov/gene/?term=RB3942 RB3944 RB3944 RB3944 2039245 2040786 + hypothetical protein best DB hits: BLAST: embl:CAB94634.1%3B (AL359215) secreted glycosyl hydrolase.%3B E%3D9e-10 pir:T34929%3B hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces%3B E%3D5e-08 embl:CAB45032.1%3B (AL078635) large multi-functional%3B E%3D0.001 gene gene2177 http://www.ncbi.nlm.nih.gov/gene/?term=RB3944 RB3946 RB3946 RB3946 2040830 2042179 + hypothetical protein best DB hits: BLAST: pir:G83466%3B hypothetical protein PA1424 [imported] - Pseudomonas%3B E%3D1e-20 pir:C82132%3B conserved hypothetical protein VC1980 [imported] -%3B E%3D3e-18 gb:AAF54040.1%3B (AE003672) CG10050 gene product [Drosophila%3B E%3D3e-12 COG: PA1424%3B COG3148 Uncharacterized ACR%3B E%3D1e-21 gene gene2178 http://www.ncbi.nlm.nih.gov/gene/?term=RB3946 RB3949 RB3949 RB3949 2042289 2042528 + hypothetical protein gene gene2179 http://www.ncbi.nlm.nih.gov/gene/?term=RB3949 RB395 RB395 RB395 207191 209692 + signal peptide gene gene229 http://www.ncbi.nlm.nih.gov/gene/?term=RB395 RB3950 RB3950 RB3950 2042479 2044623 + hypothetical protein PMID: 10831436 best DB hits: BLAST: gb:AAF76874.1%3B (AF246145) unknown [uncultured soil microbe%3B E%3D3e-08 gene gene2180 http://www.ncbi.nlm.nih.gov/gene/?term=RB3950 RB3951 RB3951 RB3951 2044634 2046217 - large multi-functional protein best DB hits: BLAST: pir:T36423%3B probable large%2C multifunctional secreted protein -%3B E%3D1e-59 embl:CAB45032.1%3B (AL078635) large multi-functional%3B E%3D4e-53 gene gene2181 http://www.ncbi.nlm.nih.gov/gene/?term=RB3951 RB3953 RB3953 RB3953 2046211 2048784 - cytochrome oxidase (cbb3-type) PMID: 9923682 best DB hits: BLAST: pir:B71970%3B cytochrome oxidase (cbb3-type) - Helicobacter pylori%3B E%3D2e-04 pir:C64538%3B cytochrome-c oxidase (EC 1.9.3.1) chain fixP -%3B E%3D0.003 ddbj:BAA33529.1%3B (AB018105) cb-type cytochrome c oxidase subunit%3B E%3D0.009 COG: jhp0135%3B COG2010 Cytochrome c%2C mono- and diheme variants%3B E%3D2e-05 PFAM: PF00034%3B Cytochrome c%3B E%3D0.00073 gene gene2182 http://www.ncbi.nlm.nih.gov/gene/?term=RB3953 RB3956 RB3956 arsA arsA 2048754 2050223 - arylsulfatase PMID: 2303452 best DB hits: BLAST: pir:F70837%3B probable sulfatase (EC 3.1.6.-) atsG - Mycobacterium%3B E%3D8e-35 gb:AAF55607.1%3B (AE003724) CG14291 gene product [Drosophila%3B E%3D9e-27 prf:2204388A%3B sulphamidase [Homo sapiens]%3B E%3D3e-25 COG: Rv0296c%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D8e-36 PA0924%3B COG3083 Predicted hydrolase of alkaline phosphatase%3B E%3D3e-05 Rv0711%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D5e-04 PFAM: PF00884%3B Sulfatase%3B E%3D2.8e-22 gene gene2183 http://www.ncbi.nlm.nih.gov/gene/?term=RB3956 RB3958 RB3958 RB3958 2050260 2050421 + hypothetical protein gene gene2184 http://www.ncbi.nlm.nih.gov/gene/?term=RB3958 RB3959 RB3959 RB3959 2050392 2050802 - hypothetical protein PMID: 10567266 best DB hits: BLAST: pir:E75594%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D7e-11 pir:B83042%3B hypothetical protein PA4830 [imported] - Pseudomonas%3B E%3D6e-08 ddbj:BAB06321.1%3B (AP001516) BH2602~~unknown conserved protein in%3B E%3D7e-07 COG: DRA0017%3B COG2050 Uncharacterized protein PaaI%2C possibly involved in%3B E%3D7e-12 PFAM: PF02584%3B Uncharacterized protein PaaI%2C COG205%3B E%3D1.4e-12 gene gene2185 http://www.ncbi.nlm.nih.gov/gene/?term=RB3959 RB3960 RB3960 RB3960 2050885 2052723 - sodium/sulfate symporter PMID: 7690140 PMID: 7816544 best DB hits: BLAST: ddbj:BAB07103.1%3B (AP001518) sodiumsulfate symporter [Bacillus%3B E%3D5e-86 swissprot:Q39593%3B SAC1_CHLRE SULFUR DEPRIVATION RESPONSE%3B E%3D1e-75 gb:AAG20642.1%3B (AE005133) arsenite transport protein%3B ArsB%3B E%3D4e-62 COG: BH3384%3B COG0471 Di- and tricarboxylate transporters%3B E%3D5e-87 PAB1107%3B COG1055 Na+/H+ antiporter NhaD and related arsenite%3B E%3D4e-06 jhp0200%3B COG0471 Di- and tricarboxylate transporters%3B E%3D9e-05 PFAM: PF02080%3B Potassium channel%3B E%3D4.1e-08 gene gene2186 http://www.ncbi.nlm.nih.gov/gene/?term=RB3960 RB3963 RB3963 RB3963 2052742 2052870 + hypothetical protein gene gene2187 http://www.ncbi.nlm.nih.gov/gene/?term=RB3963 RB3964 RB3964 RB3964 2052859 2052984 - hypothetical protein gene gene2188 http://www.ncbi.nlm.nih.gov/gene/?term=RB3964 RB3966 RB3966 RB3966 2052983 2053240 + hypothetical protein gene gene2189 http://www.ncbi.nlm.nih.gov/gene/?term=RB3966 RB3967 RB3967 RB3967 2053237 2054871 + sodium/proline symporter (proline permease) PMID: 8031825 best DB hits: BLAST: gb:AAG20007.1%3B (AE005081) pantothenate permease%3B PanF%3B E%3D2e-20 pir:C69115%3B sodiumproline symporter (proline permease) -%3B E%3D3e-11 pir:B69833%3B metabolite permease homolog yhjB - Bacillus subtilis%3B E%3D7e-11 COG: VNG1785G%3B COG0591 Na+/proline%2C Na+/panthothenate symporters and%3B E%3D2e-21 panF%3B COG0591 Na+/proline%2C Na+/panthothenate symporters and related%3B E%3D3e-04 NMB0402%3B COG0591 Na+/proline%2C Na+/panthothenate symporters and%3B E%3D7e-04 PFAM: PF00474%3B Sodium:solute symporter family%3B E%3D0.11 gene gene2190 http://www.ncbi.nlm.nih.gov/gene/?term=RB3967 RB3970 RB3970 RB3970 2054874 2055122 - hypothetical protein gene gene2191 http://www.ncbi.nlm.nih.gov/gene/?term=RB3970 RB3971 RB3971 RB3971 2055123 2056121 + signal peptide gene gene2192 http://www.ncbi.nlm.nih.gov/gene/?term=RB3971 RB3972 RB3972 RB3972 2056175 2056288 + hypothetical protein gene gene2193 http://www.ncbi.nlm.nih.gov/gene/?term=RB3972 RB3973 RB3973 RB3973 2056253 2056375 - hypothetical protein gene gene2194 http://www.ncbi.nlm.nih.gov/gene/?term=RB3973 RB3974 RB3974 RB3974 2056416 2056565 + hypothetical protein gene gene2195 http://www.ncbi.nlm.nih.gov/gene/?term=RB3974 RB3975 RB3975 RB3975 2056726 2057340 + hypothetical protein gene gene2196 http://www.ncbi.nlm.nih.gov/gene/?term=RB3975 RB3979 RB3979 RB3979 2057337 2057897 + signal peptide gene gene2197 http://www.ncbi.nlm.nih.gov/gene/?term=RB3979 RB398 RB398 RB398 209745 211058 + signal peptide gene gene230 http://www.ncbi.nlm.nih.gov/gene/?term=RB398 RB3981 RB3981 RB3981 2058000 2058485 + hypothetical protein gene gene2198 http://www.ncbi.nlm.nih.gov/gene/?term=RB3981 RB3982 RB3982 RB3982 2058614 2058874 + hypothetical protein PMID: 9163424 best DB hits: BLAST: swissprot:P55482%3B Y4HR_RHISN HYPOTHETICAL 8.8 KD PROTEIN Y4HR%3B E%3D4e-15 gene gene2199 http://www.ncbi.nlm.nih.gov/gene/?term=RB3982 RB3983 RB3983 RB3983 2058909 2059145 - hypothetical protein gene gene2200 http://www.ncbi.nlm.nih.gov/gene/?term=RB3983 RB3985 RB3985 RB3985 2059197 2059634 + hypothetical protein gene gene2201 http://www.ncbi.nlm.nih.gov/gene/?term=RB3985 RB3988 RB3988 RB3988 2059740 2060306 + signal peptide gene gene2202 http://www.ncbi.nlm.nih.gov/gene/?term=RB3988 RB3989 RB3989 RB3989 2060382 2060714 + hypothetical protein gene gene2203 http://www.ncbi.nlm.nih.gov/gene/?term=RB3989 RB399 RB399 pgi pgi 211175 212728 - glucose-6-phosphate isomerase PMID: 2549364 best DB hits: BLAST: swissprot:P80860%3B G6PI_BACSU GLUCOSE-6-PHOSPHATE ISOMERASE (GPI)%3B E%3D6e-53 ddbj:BAB07062.1%3B (AP001518) glucose-6-phosphate isomerase%3B E%3D4e-52 pir:S15937%3B glucose-6-phosphate isomerase (EC 5.3.1.9) - Bacillus%3B E%3D5e-52 COG: BS_pgi%3B COG0166 Glucose-6-phosphate isomerase%3B E%3D6e-54 PFAM: PF00342%3B Phosphoglucose isomerase%3B E%3D6.8e-31 gene gene231 http://www.ncbi.nlm.nih.gov/gene/?term=RB399 RB3990 RB3990 RB3990 2060721 2060888 + hypothetical protein gene gene2204 http://www.ncbi.nlm.nih.gov/gene/?term=RB3990 RB3991 RB3991 RB3991 2060864 2061145 - hypothetical protein gene gene2205 http://www.ncbi.nlm.nih.gov/gene/?term=RB3991 RB3992 RB3992 RB3992 2060926 2061081 + hypothetical protein gene gene2206 http://www.ncbi.nlm.nih.gov/gene/?term=RB3992 RB3993 RB3993 RB3993 2061165 2061287 + hypothetical protein gene gene2207 http://www.ncbi.nlm.nih.gov/gene/?term=RB3993 RB3994 RB3994 RB3994 2061291 2061866 + hypothetical protein gene gene2208 http://www.ncbi.nlm.nih.gov/gene/?term=RB3994 RB3995 RB3995 RB3995 2061980 2062264 - hypothetical protein gene gene2209 http://www.ncbi.nlm.nih.gov/gene/?term=RB3995 RB3997 RB3997 RB3997 2062268 2063416 - transposase PMID: 1646375 best DB hits: BLAST: prf:2115270C%3B transposase [Weeksella zoohelcum]%3B E%3D1e-33 swissprot:P55631%3B Y4QJ_RHISN TRANSPOSASE Y4QJ -----%3B E%3D1e-31 swissprot:P24607%3B T801_PSESH TRANSPOSASE FOR INSERTION SEQUENCE%3B E%3D4e-10 gene gene2210 http://www.ncbi.nlm.nih.gov/gene/?term=RB3997 RB3999 RB3999 RB3999 2063431 2064741 - integrase PMID: 8195081 PMID: 2821509 best DB hits: BLAST: swissprot:P55632%3B Y4QK_RHISN INTEGRASERECOMBINASE Y4QK%3B E%3D4e-39 swissprot:P55429%3B Y4EF_RHISN INTEGRASERECOMBINASE Y4EF%3B E%3D2e-32 prf:2115270D%3B integrase [Weeksella zoohelcum]%3B E%3D7e-23 COG: PAB0255%3B COG0582 Integrase%3B E%3D1e-20 PFAM: PF02899%3B Phage integrase%2C N-terminal S%3B E%3D0.3 PF00589%3B Phage integrase%3B E%3D8e-31 gene gene2211 http://www.ncbi.nlm.nih.gov/gene/?term=RB3999 RB40 RB40 RB40 19461 19922 - hypothetical protein gene gene23 http://www.ncbi.nlm.nih.gov/gene/?term=RB40 RB4000 RB4000 RB4000 2064633 2065058 + hypothetical protein gene gene2212 http://www.ncbi.nlm.nih.gov/gene/?term=RB4000 RB4001 RB4001 RB4001 2065146 2065298 + hypothetical protein gene gene2213 http://www.ncbi.nlm.nih.gov/gene/?term=RB4001 RB4002 RB4002 RB4002 2065341 2066792 + hypothetical protein best DB hits: BLAST: embl:CAA97268.1%3B (Z73025) ORF YGR240c [Saccharomyces cerevisiae]%3B E%3D0.83 gene gene2214 http://www.ncbi.nlm.nih.gov/gene/?term=RB4002 RB4005 RB4005 RB4005 2066862 2067080 - hypothetical protein gene gene2215 http://www.ncbi.nlm.nih.gov/gene/?term=RB4005 RB4007 RB4007 RB4007 2067163 2067390 - hypothetical protein gene gene2216 http://www.ncbi.nlm.nih.gov/gene/?term=RB4007 RB4008 RB4008 RB4008 2067413 2070805 - large multi-functional protein best DB hits: BLAST: embl:CAB45032.1%3B (AL078635) large multi-functional protein%3B E%3D1e-22 pir:T36423%3B probable large%2C multifunctional secreted protein -%3B E%3D4e-18 PFAM: PF00034%3B Cytochrome c%3B E%3D0.24 PF01436%3B NHL repeat%3B E%3D0.25 gene gene2217 http://www.ncbi.nlm.nih.gov/gene/?term=RB4008 RB4011 RB4011 RB4011 2070828 2071661 - hypothetical protein PMID: 12093901 best DB hits: BLAST: ddbj:BAB05241.1%3B (AP001512) thioredoxin (thiol:disulfide%3B E%3D0.019 ddbj:BAB05296.1%3B (AP001512) cytochrome c biogenesis (thioredoxin)%3B E%3D0.12 pir:E69891%3B cytochrome c biogenesis protein CycX homolog homolog%3B E%3D0.15 COG: BH1522%3B COG0526 Thiol-disulfide isomerase and thioredoxins%3B E%3D0.002 gene gene2218 http://www.ncbi.nlm.nih.gov/gene/?term=RB4011 RB4013 RB4013 hrpB hrpB 2071700 2074240 - ATP-dependent helicase PMID: 10322435 PMID: 9862990 best DB hits: BLAST: pir:B83150%3B probable ATP-dependent helicase PA3961 [imported] -%3B E%3D1e-113 gb:AAC45544.1%3B (U49051) HelO [Sinorhizobium meliloti]%3B E%3D1e-110 pir:E82708%3B ATP-dependent helicase XF1229 [imported] - Xylella%3B E%3D1e-107 COG: PA3961%3B COG1643 HrpA-like helicases%3B E%3D1e-114 PFAM: PF00270%3B DEAD/DEAH box helicase%3B E%3D0.19 PF00271%3B Helicase conserved C-terminal%3B E%3D3.7e-12 gene gene2219 http://www.ncbi.nlm.nih.gov/gene/?term=RB4013 RB4014 RB4014 RB4014 2074186 2075607 - acetyl xylan esterase PMID: 10846217 best DB hits: BLAST: embl:CAB55348.1%3B (AJ238716) acetyl xylan esterase [Ruminococcus%3B E%3D5e-07 gene gene2220 http://www.ncbi.nlm.nih.gov/gene/?term=RB4014 RB4015 RB4015 RB4015 2075604 2076314 - signal peptide best DB hits: PFAM: PF00054%3B Laminin G domain%3B E%3D0.012 gene gene2221 http://www.ncbi.nlm.nih.gov/gene/?term=RB4015 RB4017 RB4017 atsG atsG 2076280 2078145 + sulfatase PMID: 10950929 best DB hits: BLAST: pir:F70837%3B probable sulfatase (EC 3.1.6.-) atsG - Mycobacterium%3B E%3D3e-26 gb:AAG17207.1%3B AF217204_1 (AF217204) heparan sulfate sulfamidase%3B E%3D2e-20 gb:AAF55607.1%3B (AE003724) CG14291 gene product [Drosophila%3B E%3D5e-20 COG: Rv0296c%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D3e-27 PA0924%3B COG3083 Predicted hydrolase of alkaline phosphatase%3B E%3D7e-05 Rv3299c%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D7e-05 PFAM: PF00884%3B Sulfatase%3B E%3D2.5e-24 gene gene2222 http://www.ncbi.nlm.nih.gov/gene/?term=RB4017 RB402 RB402 RB402 212820 213275 + hypothetical protein gene gene232 http://www.ncbi.nlm.nih.gov/gene/?term=RB402 RB4021 RB4021 RB4021 2078305 2078910 + signal peptide gene gene2223 http://www.ncbi.nlm.nih.gov/gene/?term=RB4021 RB4022 RB4022 estB estB 2078917 2079660 + esterase PMID: 8190066 best DB hits: BLAST: pir:S43880%3B esterase - Spirulina platensis ----- gb:%3B E%3D2e-09 pir:S75304%3B serine esterase - Synechocystis sp. (strain PCC 6803)%3B E%3D1e-06 pir:F81704%3B serine esterase%2C probable TC0413 [imported] - Chlamydia%3B E%3D0.002 COG: sll1284%3B COG0400 Predicted esterase%3B E%3D1e-07 PFAM: PF02230%3B Phospholipase/Carboxylesterase%3B E%3D0.27 gene gene2224 http://www.ncbi.nlm.nih.gov/gene/?term=RB4022 RB4023 RB4023 RB4023 2079657 2079824 + hypothetical protein gene gene2225 http://www.ncbi.nlm.nih.gov/gene/?term=RB4023 RB4024 RB4024 RB4024 2079821 2080666 + endo-1%2C4-beta-xylanase PMID: 3139632 PMID: 7664125 best DB hits: BLAST: pir:S58235%3B endo-1%2C4-beta-xylanase (EC 3.2.1.8) 1 precursor -%3B E%3D1e-11 swissprot:P10478%3B XYNZ_CLOTM ENDO-1%2C4-BETA-XYLANASE Z PRECURSOR%3B E%3D1e-10 embl:CAB93667.1%3B (AJ272430) endoxylanase [Ruminococcus%3B E%3D1e-09 COG: yieL%3B COG2382 Enterochelin esterase and related enzymes%3B E%3D4e-05 DR0779_2%3B COG2819 Predicted hydrolase of the alpha/beta superfamily%3B E%3D0.001 gene gene2226 http://www.ncbi.nlm.nih.gov/gene/?term=RB4024 RB4026 RB4026 RB4026 2080812 2081081 + hypothetical protein gene gene2227 http://www.ncbi.nlm.nih.gov/gene/?term=RB4026 RB4029 RB4029 RB4029 2081109 2081573 + hypothetical protein PMID: 10952301 best DB hits: BLAST: pir:F82453%3B conserved hypothetical protein VCA0489 [imported] -%3B E%3D5e-06 pir:F82462%3B conserved hypothetical protein VCA0423 [imported] -%3B E%3D0.002 gene gene2228 http://www.ncbi.nlm.nih.gov/gene/?term=RB4029 RB4031 RB4031 ppkA ppkA 2081637 2083304 - serine/threonine protein kinase PpkA PMID: 10496921 PMID: 3291115 best DB hits: BLAST: pir:C70584%3B probable serine-threonine protein kinase - Mycobacterium%3B E%3D2e-36 embl:CAB62227.1%3B (AJ250200) serinethreonine protein%3B E%3D2e-36 ddbj:BAB06223.1%3B (AP001515) serinethreonine protein kinase%3B E%3D6e-36 COG: Rv0931c_1%3B COG0515 Serine/threonine protein kinases%3B E%3D2e-37 PFAM: PF00069%3B Protein kinase domain%3B E%3D6.8e-40 gene gene2229 http://www.ncbi.nlm.nih.gov/gene/?term=RB4031 RB4032 RB4032 RB4032 2083440 2084885 - hypothetical protein gene gene2230 http://www.ncbi.nlm.nih.gov/gene/?term=RB4032 RB4035 RB4035 RB4035 2084900 2085007 + hypothetical protein gene gene2231 http://www.ncbi.nlm.nih.gov/gene/?term=RB4035 RB4037 RB4037 RB4037 2085009 2088578 - hypothetical protein best DB hits: PFAM: PF00703%3B Glycosyl hydrolases family 2%2C%3B E%3D0.0075 gene gene2232 http://www.ncbi.nlm.nih.gov/gene/?term=RB4037 RB404 RB404 RB404 213284 215665 - hypothetical protein best DB hits: PFAM: PF01423%3B Sm protein%3B E%3D0.11 gene gene233 http://www.ncbi.nlm.nih.gov/gene/?term=RB404 RB4041 RB4041 RB4041 2088275 2089261 + hypothetical protein gene gene2233 http://www.ncbi.nlm.nih.gov/gene/?term=RB4041 RB4043 RB4043 RB4043 2089389 2090744 - glucose-1-phosphate thymidylyltransferase best DB hits: BLAST: pir:F72591%3B probable sugar phosphate transferase APE1202 - Aeropyrum%3B E%3D5e-11 pir:E71207%3B probable glucose-1-phosphate thymidylyltransferase -%3B E%3D3e-10 pir:G75020%3B glucose-1-phosphate thymidylyltransferase (grad-2)%3B E%3D5e-10 COG: APE1202%3B COG1208 Nucleoside-diphosphate-sugar pyrophosphorylases%3B E%3D5e-12 TM1629%3B COG1207 N-acetylglucosamine-1-phosphate uridyltransferase%3B E%3D4e-04 MJ1101%3B COG1208 Nucleoside-diphosphate-sugar pyrophosphorylases%3B E%3D0.006 gene gene2234 http://www.ncbi.nlm.nih.gov/gene/?term=RB4043 RB4046 RB4046 RB4046 2090795 2090953 + hypothetical protein gene gene2235 http://www.ncbi.nlm.nih.gov/gene/?term=RB4046 RB4048 RB4048 RB4048 2090905 2092092 + signal peptide gene gene2236 http://www.ncbi.nlm.nih.gov/gene/?term=RB4048 RB4051 RB4051 RB4051 2092210 2092752 - hypothetical protein gene gene2237 http://www.ncbi.nlm.nih.gov/gene/?term=RB4051 RB4053 RB4053 RB4053 2092821 2094125 - signal peptide PMID: 11759840 best DB hits: BLAST: embl:CAA82877.1%3B (Z29987) VLA-2 homologue [Mus musculus]%3B E%3D0.40 PFAM: PF00092%3B von Willebrand factor type A do%3B E%3D0.33 gene gene2238 http://www.ncbi.nlm.nih.gov/gene/?term=RB4053 RB4054 RB4054 RB4054 2094089 2094352 - hypothetical protein gene gene2239 http://www.ncbi.nlm.nih.gov/gene/?term=RB4054 RB4059 RB4059 RB4059 2094349 2094819 - hypothetical protein best DB hits: PFAM: PF00499%3B NADH-ubiquinone/plastoquinone oxi%3B E%3D0.23 gene gene2240 http://www.ncbi.nlm.nih.gov/gene/?term=RB4059 RB406 RB406 RB406 215823 217496 - mucin-desulfating sulfatase (N-acetylglucosamine-6-sulfatase) PMID: 10809675 best DB hits: BLAST: gb:AAF72520.1%3B AF248951_1 (AF248951) mucin-desulfating sulfatase%3B E%3D4e-37 pir:F83354%3B probable sulfatase PA2333 [imported] - Pseudomonas%3B E%3D2e-19 gb:AAF55296.1%3B (AE003712) Sulf1 gene product [Drosophila%3B E%3D2e-18 COG: PA2333%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D1e-20 yejM%3B COG3083 Predicted hydrolase of alkaline phosphatase%3B E%3D7e-04 BS_yfnI%3B COG1368 Phosphoglycerol transferase and related proteins%2C%3B E%3D0.001 PFAM: PF00325%3B Bacterial regulatory proteins%2C crp%3B E%3D0.29 PF00884%3B Sulfatase%3B E%3D4.3e-51 gene gene234 http://www.ncbi.nlm.nih.gov/gene/?term=RB406 RB4060 RB4060 RB4060 2094831 2095403 - hypothetical protein gene gene2241 http://www.ncbi.nlm.nih.gov/gene/?term=RB4060 RB4061 RB4061 RB4061 2095498 2096964 + type 4 prepilin-like proteins leader peptide processing enzyme PMID: 8817497 PMID: 8439290 best DB hits: BLAST: pir:E82546%3B pre-pilin leader peptidase XF2537 [imported] - Xylella%3B E%3D5e-06 swissprot:P36642%3B LEP4_PSEPU TYPE 4 PREPILIN-LIKE PROTEINS LEADER%3B E%3D1e-05 gb:AAC17878.1%3B (AF062531) signal peptidase [Pseudomonas putida%3B E%3D1e-04 COG: XF2537%3B COG1989 Signal peptidase%2C cleaves prepilin-like proteins%3B E%3D5e-07 PFAM: PF01478%3B Type III leader peptidase famil%3B E%3D3.7e-05 gene gene2242 http://www.ncbi.nlm.nih.gov/gene/?term=RB4061 RB4066 RB4066 RB4066 2097008 2097298 - hypothetical protein gene gene2243 http://www.ncbi.nlm.nih.gov/gene/?term=RB4066 RB4069 RB4069 moaA moaA 2097313 2098392 + molybdopterin cofactor synthesis protein A PMID: 8588735 PMID: 7890743 best DB hits: BLAST: pir:S57490%3B molybdopterin cofactor synthesis protein - Arthrobacter%3B E%3D2e-74 swissprot:Q44118%3B MOAA_ARTNI PROBABLE MOLYBDOPTERIN COFACTOR%3B E%3D2e-74 swissprot:Q39055%3B CNX2_ARATH MOLYBDOPTERIN BIOSYNTHESIS CNX2%3B E%3D4e-64 COG: Rv0869c%3B COG2896 Molybdenum cofactor biosynthesis enzyme%3B E%3D5e-59 PFAM: PF01444%3B moaA / nifB / pqqE family%3B E%3D2.5e-62 gene gene2244 http://www.ncbi.nlm.nih.gov/gene/?term=RB4069 RB4071 RB4071 RB4071 2098441 2099550 + hypothetical protein best DB hits: BLAST: pir:H83105%3B conserved hypothetical protein PA4319 [imported] -%3B E%3D3e-16 pir:S75694%3B hypothetical protein slr1478 - Synechocystis sp. (strain%3B E%3D2e-09 ddbj:BAB04452.1%3B (AP001509) BH0733~~unknown conserved protein in%3B E%3D3e-05 COG: PA4319%3B COG1300 Uncharacterized membrane protein%3B E%3D2e-17 PFAM: PF01944%3B Integral membrane protein DUF95%3B E%3D0.69 gene gene2245 http://www.ncbi.nlm.nih.gov/gene/?term=RB4071 RB4073 RB4073 RB4073 2099516 2100616 + signal peptide gene gene2246 http://www.ncbi.nlm.nih.gov/gene/?term=RB4073 RB4077 RB4077 RB4077 2100715 2101524 + signal peptide best DB hits: BLAST: ddbj:BAB04448.1%3B (AP001509) BH0729~~unknown conserved protein in%3B E%3D0.30 gene gene2247 http://www.ncbi.nlm.nih.gov/gene/?term=RB4077 RB4079 RB4079 RB4079 2101521 2103161 + hypothetical protein gene gene2248 http://www.ncbi.nlm.nih.gov/gene/?term=RB4079 RB4081 RB4081 moxR moxR 2103158 2104297 + regulatory protein PMID: 8997703 PMID: 1657871 PMID: 9163922 best DB hits: BLAST: pir:C83106%3B conserved hypothetical protein PA4322 [imported] -%3B E%3D2e-79 pir:E70792%3B probable regulatory protein - Mycobacterium tuberculosis%3B E%3D7e-74 embl:CAB90929.1%3B (AL355774) regulatory protein%3B E%3D2e-69 COG: PA4322%3B COG0714 MoxR-like ATPases%3B E%3D2e-80 PFAM: PF00004%3B ATPase associated with va%3B E%3D0.0093 PF01078%3B Magnesium chelatase%2C subunit Chl%3B E%3D0.0014 gene gene2249 http://www.ncbi.nlm.nih.gov/gene/?term=RB4081 RB4083 RB4083 RB4083 2104537 2104647 + hypothetical protein gene gene2251 http://www.ncbi.nlm.nih.gov/gene/?term=RB4083 RB4084 RB4084 RB4084 2104677 2105036 + hypothetical protein gene gene2252 http://www.ncbi.nlm.nih.gov/gene/?term=RB4084 RB4087 RB4087 RB4087 2105146 2105904 + partition protein PMID: 11407917 best DB hits: BLAST: gb:AAB36936.1%3B (U77780) unknown [Chlorobium limicola]%3B E%3D6e-11 gb:AAD42964.1%3B AF144883_1 (AF144883) partition protein%3B E%3D7e-08 gb:AAD21669.1%3B (AF133830) pVS1 partitioning protein [Shuttle%3B E%3D8e-08 COG: DR0013%3B COG1192 ATPases involved in chromosome partitioning%3B E%3D1e-06 PH0612%3B COG0455 ATPases involved in chromosome partitioning%3B E%3D2e-04 aq_aa35%3B COG1192 ATPases involved in chromosome partitioning%3B E%3D2e-04 PFAM: PF02374%3B Anion-transporting ATPase%3B E%3D2.9e-06 PF01583%3B Adenylylsulfate kinase%3B E%3D0.00057 PF00991%3B ParA family ATPase%3B E%3D0.14 gene gene2253 http://www.ncbi.nlm.nih.gov/gene/?term=RB4087 RB409 RB409 RB409 217387 218925 + arylsulfatase PMID: 7910580 best DB hits: BLAST: swissprot:P50428%3B ARSA_MOUSE ARYLSULFATASE A PRECURSOR (ASA)%3B E%3D2e-38 gb:AAF63858.1%3B (AF112242) N-acetylgalactosamine-6-sulfate%3B E%3D7e-38 gb:AAC27821.1%3B (AF013158) arylsulfatase [Heliocidaris%3B E%3D1e-37 COG: ydeN%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D2e-25 yejM%3B COG3083 Predicted hydrolase of alkaline phosphatase%3B E%3D1e-05 Rv0296c%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D3e-05 PFAM: PF00884%3B Sulfatase%3B E%3D1.5e-38 PF00391%3B PEP-utilizing enzyme%2C mobile do%3B E%3D0.65 PF00884%3B Sulfatase%3B E%3D4.6e-44 gene gene235 http://www.ncbi.nlm.nih.gov/gene/?term=RB409 RB4090 RB4090 RB4090 2105915 2106241 + hypothetical protein gene gene2254 http://www.ncbi.nlm.nih.gov/gene/?term=RB4090 RB4091 RB4091 ydcC ydcC 2106238 2107443 + H repeat-containing protein ydcC PMID: 8041625 best DB hits: BLAST: gb:AAG55028.1%3B AE005248_9 (AE005248) receptor%3B E%3D4e-61 gb:AAG54539.1%3B AE005200_1 (AE005200) Z0271 gene product%3B E%3D1e-60 swissprot:P28917%3B YDCC_ECOLI H REPEAT-ASSOCIATED PROTEIN IN%3B E%3D1e-60 PFAM: PF01811%3B Transposase%3B E%3D1.3e-65 gene gene2255 http://www.ncbi.nlm.nih.gov/gene/?term=RB4091 RB4093 RB4093 RB4093 2107600 2107737 + hypothetical protein gene gene2256 http://www.ncbi.nlm.nih.gov/gene/?term=RB4093 RB4094 RB4094 RB4094 2107798 2108211 + hypothetical protein gene gene2257 http://www.ncbi.nlm.nih.gov/gene/?term=RB4094 RB4097 RB4097 RB4097 2108244 2110445 + hypothetical protein best DB hits: BLAST: gb:AAB91577.2%3B (AF242881) ymc [Agrobacterium tumefaciens]%3B E%3D1e-04 gb:AAF01192.1%3B AF179401_1 (AF179401) epoxidase%3B E%3D0.11 pir:D70028%3B conserved hypothetical protein yvaO - Bacillus subtilis%3B E%3D0.16 PFAM: PF01381%3B Helix-turn-helix%3B E%3D3.4e-10 gene gene2258 http://www.ncbi.nlm.nih.gov/gene/?term=RB4097 RB4099 RB4099 RB4099 2110438 2111625 + signal peptide best DB hits: PFAM: PF01658%3B Myo-inositol-1-phosphate synth%3B E%3D0.89 gene gene2259 http://www.ncbi.nlm.nih.gov/gene/?term=RB4099 RB41 RB41 RB41 20053 20550 - hypothetical protein gene gene24 http://www.ncbi.nlm.nih.gov/gene/?term=RB41 RB410 RB410 trpD trpD 218958 219986 - anthranilate phosphoribosyltransferase PMID: 9061023 best DB hits: BLAST: swissprot:P94326%3B TRPD_BRAJA ANTHRANILATE%3B E%3D4e-55 ddbj:BAB05379.1%3B (AP001512) anthranilate%3B E%3D3e-53 swissprot:O66576%3B TRPD_AQUAE ANTHRANILATE%3B E%3D1e-50 COG: BH1660%3B COG0547 Anthranilate phosphoribosyltransferase%3B E%3D2e-54 PFAM: PF02885%3B Glycosyl transferase%2C%3B E%3D7.5e-13 PF00591%3B Glycosyl transferase%2C%3B E%3D1.6e-96 gene gene236 http://www.ncbi.nlm.nih.gov/gene/?term=RB410 RB4100 RB4100 RB4100 2111716 2112267 + hypothetical protein gene gene2260 http://www.ncbi.nlm.nih.gov/gene/?term=RB4100 RB4104 RB4104 RB4104 2112335 2112553 + hypothetical protein gene gene2261 http://www.ncbi.nlm.nih.gov/gene/?term=RB4104 RB4105 RB4105 radC radC 2112565 2113191 + hypothetical protein PMID: 741263 best DB hits: BLAST: swissprot:Q9X1P3%3B RADC_THEMA DNA REPAIR PROTEIN RADC HOMOLOG%3B E%3D6e-25 ddbj:BAB06751.1%3B (AP001517) DNA repair protein [Bacillus%3B E%3D3e-23 swissprot:Q02170%3B RADC_BACSU DNA REPAIR PROTEIN RADC HOMOLOG%3B E%3D2e-22 COG: TM1557%3B COG2003 DNA repair proteins%3B E%3D5e-26 gene gene2262 http://www.ncbi.nlm.nih.gov/gene/?term=RB4105 RB4106 RB4106 RB4106 2113242 2114714 - hypothetical protein gene gene2263 http://www.ncbi.nlm.nih.gov/gene/?term=RB4106 RB4107 RB4107 RB4107 2114854 2114982 + hypothetical protein gene gene2264 http://www.ncbi.nlm.nih.gov/gene/?term=RB4107 RB4108 RB4108 RB4108 2114968 2115666 - hypothetical protein PMID: 11214968 gene gene2265 http://www.ncbi.nlm.nih.gov/gene/?term=RB4108 RB4109 RB4109 RB4109 2115765 2115926 + hypothetical protein gene gene2266 http://www.ncbi.nlm.nih.gov/gene/?term=RB4109 RB4111 RB4111 RB4111 2115860 2116267 - hypothetical protein gene gene2267 http://www.ncbi.nlm.nih.gov/gene/?term=RB4111 RB4112 RB4112 RB4112 2116228 2116365 - hypothetical protein gene gene2268 http://www.ncbi.nlm.nih.gov/gene/?term=RB4112 RB4113 RB4113 ydcC ydcC 2116503 2117681 - H repeat-containing protein ydcC PMID: 2542093 best DB hits: BLAST: gb:AAG55028.1%3B AE005248_9 (AE005248) receptor%3B E%3D4e-61 gb:AAG54539.1%3B AE005200_1 (AE005200) Z0271 gene product%3B E%3D1e-60 swissprot:P28917%3B YDCC_ECOLI H REPEAT-ASSOCIATED PROTEIN IN%3B E%3D1e-60 PFAM: PF01811%3B Transposase%3B E%3D1.3e-65 gene gene2269 http://www.ncbi.nlm.nih.gov/gene/?term=RB4113 RB4114 RB4114 RB4114 2117690 2117971 + hypothetical protein gene gene2270 http://www.ncbi.nlm.nih.gov/gene/?term=RB4114 RB4115 RB4115 RB4115 2118055 2119110 - nitrate reductase related protein best DB hits: BLAST: embl:CAC01558.1%3B (AL391039) conserved hypothetical protein%3B E%3D3e-27 gb:AAG19482.1%3B (AE005040) sulfite oxidase homolog%3B YuiH%3B E%3D3e-27 pir:A70013%3B sulfite oxidase homolog yuiH - Bacillus subtilis -----%3B E%3D6e-26 COG: VNG1084G%3B COG2041 Uncharacterized enzymes%2C related to nitrate%3B E%3D3e-28 sll1011_2%3B COG1357 Uncharacterized low-complexity proteins%3B E%3D1e-11 PA4692%3B COG2041 Uncharacterized enzymes%2C related to nitrate%3B E%3D2e-11 PFAM: PF00174%3B Oxidoreductase molybdopterin b%3B E%3D0.16 PF00805%3B Pentapeptide repeats (8 copies%3B E%3D3e-06 gene gene2271 http://www.ncbi.nlm.nih.gov/gene/?term=RB4115 RB4116 RB4116 blaR blaR 2119149 2122532 - regulatory protein blaR1 PMID: 3040663 PMID: 3260234 PMID: 2404938 best DB hits: BLAST: swissprot:P12287%3B BLAR_BACLI REGULATORY PROTEIN BLAR1 -----%3B E%3D2e-05 pir:I39942%3B penicillinase antirepressor penJ - Bacillus%3B E%3D5e-05 swissprot:P18357%3B BLAR_STAAU REGULATORY PROTEIN BLAR1 -----%3B E%3D3e-04 PFAM: PF01271%3B Granin (chromogranin or secretograni%3B E%3D0.87 gene gene2272 http://www.ncbi.nlm.nih.gov/gene/?term=RB4116 RB4118 RB4118 blaI blaI 2122535 2122978 - penicillinase repressor PMID: 3096969 PMID: 3305074 PMID: 3260234 best DB hits: BLAST: swissprot:P06555%3B BLAI_BACLI PENICILLINASE REPRESSOR (REGULATORY%3B E%3D7e-10 pir:B28183%3B beta-lactamase repressor protein - Bacillus%3B E%3D8e-09 pir:S74550%3B hypothetical protein slr0240 - Synechocystis sp. (strain%3B E%3D2e-05 PFAM: PF00392%3B Bacterial regulatory proteins%2C gntR%3B E%3D0.082 gene gene2273 http://www.ncbi.nlm.nih.gov/gene/?term=RB4118 RB412 RB412 RB412 219979 220110 - hypothetical protein gene gene237 http://www.ncbi.nlm.nih.gov/gene/?term=RB412 RB4121 RB4121 RB4121 2123102 2123269 + signal peptide gene gene2274 http://www.ncbi.nlm.nih.gov/gene/?term=RB4121 RB4123 RB4123 RB4123 2123372 2123818 + hypothetical protein best DB hits: BLAST: pir:S75246%3B hypothetical protein slr1023 - Synechocystis sp. (strain%3B E%3D1e-20 pir:G71082%3B probable mannose-1-phosphate guanylyl transferase -%3B E%3D0.65 gene gene2275 http://www.ncbi.nlm.nih.gov/gene/?term=RB4123 RB4127 RB4127 RB4127 2124045 2124884 + hypothetical protein best DB hits: BLAST: pir:T37061%3B probable secreted protein - Streptomyces coelicolor%3B E%3D5e-26 pir:T35483%3B hypothetical protein SC6C5.12c SC6C5.12c - Streptomyces%3B E%3D2e-17 swissprot:P75772%3B YBHP_ECOLI HYPOTHETICAL 28.8 KDA PROTEIN IN%3B E%3D3e-11 PFAM: PF00783%3B Inositol polyphosphate phosph%3B E%3D0.5 gene gene2276 http://www.ncbi.nlm.nih.gov/gene/?term=RB4127 RB4128 RB4128 RB4128 2124835 2125032 + hypothetical protein gene gene2277 http://www.ncbi.nlm.nih.gov/gene/?term=RB4128 RB4129 RB4129 RB4129 2125088 2126368 + hypothetical protein PMID: 99287316 best DB hits: BLAST: pir:C72377%3B hypothetical protein TM0440 - Thermotoga maritima%3B E%3D1e-22 gene gene2278 http://www.ncbi.nlm.nih.gov/gene/?term=RB4129 RB413 RB413 RB413 220107 221150 - signal peptide PMID: 11997336 gene gene238 http://www.ncbi.nlm.nih.gov/gene/?term=RB413 RB4131 RB4131 yjjN yjjN 2126371 2127399 + zinc-type alcohol dehydrogenase PMID: 3622514 PMID: 1593644 best DB hits: BLAST: swissprot:P39400%3B YJJN_ECOLI HYPOTHETICAL ZINC-TYPE ALCOHOL%3B E%3D1e-51 gb:AAG59541.1%3B AE005667_5 (AE005667) oxidoreductase%3B E%3D9e-51 pir:F69852%3B L-iditol 2-dehydrogenase (EC 1.1.1.14) homolog yjmD -%3B E%3D1e-38 COG: yjjN%3B COG1063 Threonine dehydrogenase and related Zn-dependent%3B E%3D1e-52 PFAM: PF01494%3B FAD binding domain%3B E%3D0.28 PF00070%3B Pyridine nucleotide-disulphide%3B E%3D0.0008 PF00107%3B Zinc-binding dehydrogenases%3B E%3D1.3e-68 gene gene2279 http://www.ncbi.nlm.nih.gov/gene/?term=RB4131 RB4132 RB4132 RB4132 2127468 2127818 - hypothetical protein best DB hits: BLAST: embl:CAA53530.1%3B (X75926) ABC transporter [Mus musculus]%3B E%3D0.53 gene gene2280 http://www.ncbi.nlm.nih.gov/gene/?term=RB4132 RB4136 RB4136 phoB phoB 2128240 2128680 + regulatory components of sensory transduction system PMID: 8905231 best DB hits: BLAST: embl:CAA11074.1%3B (AJ223073) phosphate regulatory protein%3B E%3D3e-11 pir:B70152%3B response regulatory protein (rrp-1) homolog - Lyme%3B E%3D1e-10 gb:AAD30120.2%3B (AF135389) DNA binding response regulator RpaA%3B E%3D2e-10 COG: BB0419_1%3B COG0784 CheY-like receiver domains%3B E%3D1e-11 slr0115%3B COG0745 Response regulators consisting of a CheY-like%3B E%3D2e-10 slr1305_1%3B COG0784 CheY-like receiver domains%3B E%3D3e-09 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D1.4e-18 gene gene2281 http://www.ncbi.nlm.nih.gov/gene/?term=RB4136 RB4137 RB4137 hydH hydH 2128586 2129998 + sensor protein (HYDH)- sensory transduction histidine kinase PMID: 2666400 PMID: 11243806 best DB hits: BLAST: gb:AAF33505.1%3B (AF170176) Salmonella typhimurium sensor protein%3B E%3D1e-13 gb:AAG59806.1%3B AF305914_1 (AF305914) HydH [Klebsiella oxytoca]%3B E%3D2e-13 pir:S70528%3B sensor protein pilS - Myxococcus xanthus ----- gb:%3B E%3D4e-13 COG: BH3477%3B COG0642 Sensory transduction histidine kinases%3B E%3D2e-13 PFAM: PF00512%3B His Kinase A (phosphoacceptor) doma%3B E%3D2e-11 PF02518%3B Histidine kinase-%2C DNA gyrase B-%2C p%3B E%3D2.9e-21 gene gene2282 http://www.ncbi.nlm.nih.gov/gene/?term=RB4137 RB4142 RB4142 RB4142 2130009 2130140 + hypothetical protein gene gene2283 http://www.ncbi.nlm.nih.gov/gene/?term=RB4142 RB4143 RB4143 gatA gatA 2130113 2131612 + glutamyl-tRNA(Gln) amidotransferase subunit A PMID: 8905231 best DB hits: BLAST: swissprot:P73558%3B GATA_SYNY3 GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE%3B E%3D1e-123 pir:H83084%3B Glu-tRNA(Gln) amidotransferase subunit A PA4483%3B E%3D1e-121 swissprot:Q9Z580%3B GATA_STRCO GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE%3B E%3D1e-120 COG: slr0877%3B COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit%3B E%3D1e-124 PFAM: PF01425%3B Amidase%3B E%3D1.1e-195 gene gene2284 http://www.ncbi.nlm.nih.gov/gene/?term=RB4143 RB4145 RB4145 RB4145 2131661 2131933 - hypothetical protein gene gene2285 http://www.ncbi.nlm.nih.gov/gene/?term=RB4145 RB4147 RB4147 RB4147 2131928 2132338 + hypothetical protein gene gene2286 http://www.ncbi.nlm.nih.gov/gene/?term=RB4147 RB4149 RB4149 RB4149 2132396 2132554 - hypothetical protein gene gene2287 http://www.ncbi.nlm.nih.gov/gene/?term=RB4149 RB4150 RB4150 RB4150 2132600 2133433 - hypothetical protein gene gene2288 http://www.ncbi.nlm.nih.gov/gene/?term=RB4150 RB4151 RB4151 RB4151 2133421 2134521 - type IV pilus assembly protein TapB best DB hits: BLAST: pir:B70469%3B type IV pilus assembly protein TapB - Aquifex aeolicus%3B E%3D0.001 embl:CAA10651.1%3B (AJ132364) PilB protein [Pseudomonas stutzeri]%3B E%3D0.005 pir:S55026%3B secretion protein - Aeromonas salmonicida ----- gb:%3B E%3D0.020 COG: aq_1971%3B COG2804 Predicted ATPases involved in pili biogenesis%2C PilB%3B E%3D9e-05 gene gene2289 http://www.ncbi.nlm.nih.gov/gene/?term=RB4151 RB4152 RB4152 RB4152 2134647 2135369 + hypothetical protein gene gene2290 http://www.ncbi.nlm.nih.gov/gene/?term=RB4152 RB4155 RB4155 RB4155 2135376 2135555 + hypothetical protein gene gene2291 http://www.ncbi.nlm.nih.gov/gene/?term=RB4155 RB4156 RB4156 RB4156 2135596 2136441 + hypothetical protein PMID: 97000351 best DB hits: BLAST: embl:CAB77297.1%3B (AL160312) conserved hypothetical protein%3B E%3D7e-28 pir:E75527%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D4e-16 pir:B70392%3B hypothetical protein aq_1070 - Aquifex aeolicus -----%3B E%3D4e-16 COG: DR0370%3B COG1427 Predicted periplasmic solute-binding protein%3B E%3D4e-17 PFAM: PF02621%3B Uncharacterized ACR%2C COG1427%3B E%3D1.4e-26 gene gene2292 http://www.ncbi.nlm.nih.gov/gene/?term=RB4156 RB4160 RB4160 RB4160 2136438 2137598 + oxidoreductase PMID: 98196666 best DB hits: BLAST: ddbj:BAB06862.1%3B (AP001517) BH3143~~unknown conserved protein in%3B E%3D4e-85 pir:H70368%3B conserved hypothetical protein aq_789 - Aquifex aeolicus%3B E%3D1e-84 pir:H64601%3B conserved hypothetical protein HP0656 - Helicobacter%3B E%3D2e-80 COG: BH3143%3B COG1060 Thiamine biosynthesis enzyme ThiH and related%3B E%3D4e-86 gene gene2293 http://www.ncbi.nlm.nih.gov/gene/?term=RB4160 RB4161 RB4161 malQ malQ 2137708 2139225 + 4-alpha-glucanotransferase PMID: 10677288 best DB hits: BLAST: swissprot:O87172%3B MALQ_THEAQ 4-ALPHA-GLUCANOTRANSFERASE%3B E%3D1e-119 swissprot:P72785%3B MALQ_SYNY3 4-ALPHA-GLUCANOTRANSFERASE%3B E%3D1e-118 swissprot:P29851%3B MALQ_STRPN 4-ALPHA-GLUCANOTRANSFERASE%3B E%3D1e-114 COG: sll1676%3B COG1640 4-alpha-glucanotransferase%3B E%3D1e-119 PFAM: PF02446%3B 4-alpha-glucanotransferase%3B E%3D3.9e-185 gene gene2294 http://www.ncbi.nlm.nih.gov/gene/?term=RB4161 RB4162 RB4162 RB4162 2139180 2139521 - hypothetical protein gene gene2295 http://www.ncbi.nlm.nih.gov/gene/?term=RB4162 RB4165 RB4165 algU algU 2139632 2141797 + RNA polymerase sigma-H factor PMID: 8432708 PMID: 7961421 best DB hits: BLAST: gb:AAC45219.1%3B (U87308) extracytoplasmic function alternative%3B E%3D4e-10 gb:AAC45221.1%3B (U87307) extracytoplasmic function alternative%3B E%3D5e-10 pir:H70507%3B probable sigE protein - Mycobacterium tuberculosis%3B E%3D8e-10 COG: Rv1221%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D7e-11 PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D0.065 gene gene2296 http://www.ncbi.nlm.nih.gov/gene/?term=RB4165 RB4166 RB4166 RB4166 2141819 2141950 + hypothetical protein gene gene2297 http://www.ncbi.nlm.nih.gov/gene/?term=RB4166 RB4167 RB4167 RB4167 2141907 2144846 - hypothetical protein PMID: 96312514 best DB hits: BLAST: ddbj:BAB14717.1%3B (AK023902) unnamed protein product [Homo%3B E%3D4e-22 gb:AAC59865.1%3B (U37373) up-regulated by thyroid hormone in%3B E%3D2e-21 ddbj:BAA97210.1%3B (AB020751) gb AAD55298.1~~gene_id:MRG21.5~~strong%3B E%3D4e-19 COG: slr1608%3B COG2133 Glucose/sorbosone dehydrogenases%3B E%3D1e-11 sll1245%3B COG2010 Cytochrome c%2C mono- and diheme variants%3B E%3D0.003 XF1740%3B COG2133 Glucose/sorbosone dehydrogenases%3B E%3D0.009 PFAM: PF00034%3B Cytochrome c%3B E%3D0.049 gene gene2298 http://www.ncbi.nlm.nih.gov/gene/?term=RB4167 RB417 RB417 iunH iunH 221324 222268 + inosine-uridine preferring nucleoside hydrolase PMID: 8634238 best DB hits: BLAST: pdb:1EZR%3B A Chain A%2C Crystal Structure Of Nucleoside Hydrolase%3B E%3D3e-32 swissprot:Q27546%3B IUNH_CRIFA INOSINE-URIDINE PREFERRING NUCLEOSIDE%3B E%3D2e-31 pdb:2MAS%3B A Chain A%2C Purine Nucleoside Hydrolase With A Transition%3B E%3D4e-31 COG: yeiK%3B COG1957 Inosine-uridine nucleoside N-ribohydrolase%3B E%3D3e-31 PFAM: PF01156%3B Inosine-uridine preferring nucle%3B E%3D1.9e-51 gene gene239 http://www.ncbi.nlm.nih.gov/gene/?term=RB417 RB4172 RB4172 RB4172 2144886 2145026 - hypothetical protein gene gene2299 http://www.ncbi.nlm.nih.gov/gene/?term=RB4172 RB4173 RB4173 ftsY ftsY 2145041 2146054 + cell division protein FtsY PMID: 7584053 PMID: 94301771 best DB hits: BLAST: ddbj:BAB06205.1%3B (AP001515) signal recognition particle (docking%3B E%3D2e-61 embl:CAB13468.1%3B (Z99112) signal recognition particle (docking%3B E%3D7e-61 swissprot:P51835%3B FTSY_BACSU CELL DIVISION PROTEIN FTSY HOMOLOG%3B E%3D2e-60 COG: BH2486%3B COG0552 Signal recognition particle GTPase%3B E%3D2e-62 PFAM: PF01443%3B Viral (Superfamily 1) RNA hel%3B E%3D0.51 PF02223%3B Thymidylate kinase%3B E%3D0.014 PF00448%3B SRP54-type protein%2C GTPase do%3B E%3D7.4e-103 gene gene2300 http://www.ncbi.nlm.nih.gov/gene/?term=RB4173 RB4174 RB4174 RB4174 2146060 2146641 + tRNA (ms[2]io[6]A)-hydroxylase gene gene2301 http://www.ncbi.nlm.nih.gov/gene/?term=RB4174 RB4176 RB4176 RB4176 2146638 2146928 - hypothetical protein gene gene2302 http://www.ncbi.nlm.nih.gov/gene/?term=RB4176 RB4178 RB4178 RB4178 2146908 2147984 + signal peptide gene gene2303 http://www.ncbi.nlm.nih.gov/gene/?term=RB4178 RB4179 RB4179 RB4179 2148090 2150363 - ornithine decarboxylase inhibitor- sigma54 transciptional regulator PMID: 8346225 best DB hits: BLAST: pir:A48291%3B ornithine decarboxylase inhibitor - Escherichia coli%3B E%3D4e-70 swissprot:Q06065%3B ATOC_ECOLI ACETOACETATE METABOLISM REGULATORY%3B E%3D4e-70 gb:AAG45333.1%3B AF273214_1 (AF273214) SasR [Myxococcus xanthus]%3B E%3D1e-69 COG: atoC%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D4e-71 aq_218_2%3B COG1221 NtrC family transcriptional regulators%2C ATPase%3B E%3D1e-63 TP0519%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D1e-63 PFAM: PF00498%3B FHA domain%3B E%3D6.7e-16 PF00158%3B Sigma-54 interaction domain%3B E%3D8.9e-140 gene gene2304 http://www.ncbi.nlm.nih.gov/gene/?term=RB4179 RB418 RB418 RB418 222222 223313 + hypothetical protein PMID: 1466286 best DB hits: BLAST: gb:AAG59144.1%3B AE005625_7 (AE005625) orf%2C hypothetical protein%3B E%3D0.15 pir:I78664%3B hypothetical 34.1K protein (katg-glda intergenic region)%3B E%3D0.20 swissprot:P32667%3B YIJE_ECOLI HYPOTHETICAL 32.9 KD PROTEIN IN%3B E%3D0.24 PFAM: PF00892%3B Integral membrane protein DUF6%3B E%3D9.9e-10 gene gene240 http://www.ncbi.nlm.nih.gov/gene/?term=RB418 RB4182 RB4182 RB4182 2150524 2151873 + signal peptide gene gene2305 http://www.ncbi.nlm.nih.gov/gene/?term=RB4182 RB4185 RB4185 RB4185 2151951 2152220 + hypothetical protein gene gene2306 http://www.ncbi.nlm.nih.gov/gene/?term=RB4185 RB4186 RB4186 ppkA ppkA 2152190 2156053 - serine/threonine protein kinase PpkA PMID: 99426839 best DB hits: BLAST: gb:AAC16938.1%3B (AC002338) protein kinase [Arabidopsis%3B E%3D3e-14 ddbj:BAA83688.1%3B (AB011967) OsPK4 [Oryza sativa]%3B E%3D8e-14 gb:AAD03499.2%3B (AF035395) serinethreonine protein kinase PpkA%3B E%3D1e-12 COG: PA0074%3B COG0515 Serine/threonine protein kinases%3B E%3D2e-13 PFAM: PF00069%3B Protein kinase domain%3B E%3D2.3e-28 gene gene2307 http://www.ncbi.nlm.nih.gov/gene/?term=RB4186 RB419 RB419 RB419 223486 224613 + serine/threonine-protein kinase PMID: 7768349 best DB hits: BLAST: swissprot:Q11053%3B PKNH_MYCTU PROBABLE SERINETHREONINE-PROTEIN%3B E%3D5e-14 pir:T42076%3B protein kinase homolog - Streptomyces coelicolor -----%3B E%3D2e-13 pir:H69878%3B probable protein kinase (EC 2.7.1.-) yloP - Bacillus%3B E%3D4e-13 COG: Rv1266c%3B COG0515 Serine/threonine protein kinases%3B E%3D5e-15 PFAM: PF00069%3B Protein kinase domain%3B E%3D3.3e-32 gene gene241 http://www.ncbi.nlm.nih.gov/gene/?term=RB419 RB4193 RB4193 RB4193 2156128 2156295 - hypothetical protein gene gene2308 http://www.ncbi.nlm.nih.gov/gene/?term=RB4193 RB4194 RB4194 RB4194 2156524 2156685 - hypothetical protein gene gene2310 http://www.ncbi.nlm.nih.gov/gene/?term=RB4194 RB4195 RB4195 RB4195 2156679 2157056 + hypothetical protein gene gene2311 http://www.ncbi.nlm.nih.gov/gene/?term=RB4195 RB4196 RB4196 RB4196 2157140 2157484 + hypothetical protein gene gene2312 http://www.ncbi.nlm.nih.gov/gene/?term=RB4196 RB4197 RB4197 RB4197 2157383 2157721 - hypothetical protein gene gene2313 http://www.ncbi.nlm.nih.gov/gene/?term=RB4197 RB4199 RB4199 RB4199 2157738 2158172 - hypothetical protein gene gene2314 http://www.ncbi.nlm.nih.gov/gene/?term=RB4199 RB4201 RB4201 RB4201 2158153 2159034 - hypothetical protein gene gene2315 http://www.ncbi.nlm.nih.gov/gene/?term=RB4201 RB4203 RB4203 RB4203 2159073 2159675 - hypothetical protein gene gene2316 http://www.ncbi.nlm.nih.gov/gene/?term=RB4203 RB4204 RB4204 RB4204 2159672 2159851 - hypothetical protein gene gene2317 http://www.ncbi.nlm.nih.gov/gene/?term=RB4204 RB4205 RB4205 RB4205 2159880 2160275 + hypothetical protein gene gene2318 http://www.ncbi.nlm.nih.gov/gene/?term=RB4205 RB4206 RB4206 RB4206 2160320 2160610 + hypothetical protein gene gene2319 http://www.ncbi.nlm.nih.gov/gene/?term=RB4206 RB4208 RB4208 RB4208 2160650 2160823 + hypothetical protein gene gene2320 http://www.ncbi.nlm.nih.gov/gene/?term=RB4208 RB4210 RB4210 RB4210 2160917 2161363 + hypothetical protein gene gene2321 http://www.ncbi.nlm.nih.gov/gene/?term=RB4210 RB4211 RB4211 RB4211 2161348 2161641 - hypothetical protein gene gene2322 http://www.ncbi.nlm.nih.gov/gene/?term=RB4211 RB4213 RB4213 RB4213 2161576 2162280 + hypothetical protein gene gene2323 http://www.ncbi.nlm.nih.gov/gene/?term=RB4213 RB4215 RB4215 RB4215 2162210 2162542 - immunity region protein 3 PMID: 3934047 best DB hits: BLAST: swissprot:P10427%3B YIM3_BPPH1 HYPOTHETICAL IMMUNITY REGION%3B E%3D0.28 pir:IMBP4%3B site-specific recombinase for integration and excision%3B E%3D0.28 gene gene2324 http://www.ncbi.nlm.nih.gov/gene/?term=RB4215 RB4216 RB4216 RB4216 2162544 2162774 - hypothetical protein best DB hits: BLAST: pir:C71228%3B hypothetical protein PH0085 - Pyrococcus horikoshii%3B E%3D0.87 gene gene2325 http://www.ncbi.nlm.nih.gov/gene/?term=RB4216 RB4217 RB4217 RB4217 2162659 2162922 + signal peptide gene gene2326 http://www.ncbi.nlm.nih.gov/gene/?term=RB4217 RB4218 RB4218 RB4218 2162756 2163097 + hypothetical protein gene gene2327 http://www.ncbi.nlm.nih.gov/gene/?term=RB4218 RB4219 RB4219 RB4219 2163081 2163305 - hypothetical protein gene gene2328 http://www.ncbi.nlm.nih.gov/gene/?term=RB4219 RB422 RB422 suhB suhB 224577 225464 + inositol monophosphatase PMID: 10747806 best DB hits: BLAST: gb:AAK02399.1%3B (AE006067) SuhB [Pasteurella multocida]%3B E%3D5e-35 ddbj:BAB06354.1%3B (AP001516) myo-inositol-1(or 4)-monophosphatase%3B E%3D2e-33 swissprot:P22783%3B SUHB_ECOLI EXTRAGENIC SUPPRESSOR PROTEIN SUHB%3B E%3D6e-33 COG: BH2635%3B COG0483 Archaeal fructose-1%2C6-bisphosphatase and related%3B E%3D2e-34 VC2722%3B COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS)%3B E%3D4e-11 PFAM: PF00459%3B Inositol monophosphatase%3B E%3D8.5e-66 gene gene242 http://www.ncbi.nlm.nih.gov/gene/?term=RB422 RB4220 RB4220 RB4220 2163241 2163627 + hypothetical protein gene gene2329 http://www.ncbi.nlm.nih.gov/gene/?term=RB4220 RB4222 RB4222 RB4222 2163714 2163875 - hypothetical protein gene gene2330 http://www.ncbi.nlm.nih.gov/gene/?term=RB4222 RB4223 RB4223 RB4223 2163855 2164706 + hypothetical protein best DB hits: BLAST: gb:AAD03908.1%3B (AF079317) unknown [Sphingomonas aromaticivorans]%3B E%3D3e-05 pir:D70590%3B hypothetical protein Rv3226c - Mycobacterium%3B E%3D1e-04 gb:AAF97194.1%3B AF268611_18 (AF268611) unknown [uncultured marine%3B E%3D0.003 COG: Rv3226c%3B COG2135 Uncharacterized ACR%3B E%3D1e-05 PFAM: PF02586%3B Uncharacterized ACR%2C COG2135%3B E%3D8.4e-08 gene gene2331 http://www.ncbi.nlm.nih.gov/gene/?term=RB4223 RB4224 RB4224 dinP dinP 2164703 2165893 + DNA-damage-inducible protein P PMID: 7596361 best DB hits: BLAST: swissprot:Q47155%3B DINP_ECOLI DNA-DAMAGE-INDUCIBLE PROTEIN P%3B E%3D5e-54 gb:AAG54556.1%3B AE005201_9 (AE005201) damage-inducible protein P%3B E%3D1e-53 pir:A81861%3B impBmucB/samB family protein NMA1661 [imported] -%3B E%3D3e-52 COG: dinP%3B COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA%3B E%3D5e-55 VC2287%3B COG0389 Nucleotidyltransferase/DNA polymerase involved in%3B E%3D1e-51 UU437%3B COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA%3B E%3D1e-25 PFAM: PF00817%3B impB/mucB/samB family%3B E%3D5.9e-115 gene gene2332 http://www.ncbi.nlm.nih.gov/gene/?term=RB4224 RB4227 RB4227 RB4227 2165985 2166158 + hypothetical protein gene gene2333 http://www.ncbi.nlm.nih.gov/gene/?term=RB4227 RB4228 RB4228 RB4228 2166100 2166405 + hypothetical protein gene gene2334 http://www.ncbi.nlm.nih.gov/gene/?term=RB4228 RB4229 RB4229 RB4229 2166595 2167854 - hypothetical protein PMID: 8843436 best DB hits: BLAST: embl:CAB62702.1%3B (AL133422) hypothetical protein SCM1.44.%3B E%3D7e-37 pir:S74705%3B hypothetical protein slr1303 - Synechocystis sp. (strain%3B E%3D1e-20 pir:H70793%3B hypothetical protein Rv3703c - Mycobacterium%3B E%3D1e-19 COG: slr1303%3B COG1262 Uncharacterized BCR%3B E%3D1e-21 gene gene2335 http://www.ncbi.nlm.nih.gov/gene/?term=RB4229 RB423 RB423 RB423 225404 226054 + hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:A83440%3B conserved hypothetical protein PA1644 [imported] -%3B E%3D8e-29 pir:F75254%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D3e-26 ddbj:BAB05997.1%3B (AP001515) BH2278~~unknown conserved protein%3B E%3D1e-24 COG: PA1644%3B COG1853 Conserved protein/domain typically associated with%3B E%3D8e-30 gene gene243 http://www.ncbi.nlm.nih.gov/gene/?term=RB423 RB4230 RB4230 RB4230 2167788 2168783 - hypothetical protein PMID: 97061201 best DB hits: BLAST: embl:CAC02633.1%3B (AL390114) possible hypothetical 35.4 Kd protein%3B E%3D1e-45 pir:S74850%3B hypothetical protein slr0865 - Synechocystis sp. (strain%3B E%3D1e-34 pir:F70793%3B hypothetical protein Rv3701c - Mycobacterium%3B E%3D2e-33 gene gene2336 http://www.ncbi.nlm.nih.gov/gene/?term=RB4230 RB4232 RB4232 RB4232 2168892 2169059 + hypothetical protein gene gene2337 http://www.ncbi.nlm.nih.gov/gene/?term=RB4232 RB4233 RB4233 RB4233 2169112 2172021 - hypothetical protein gene gene2338 http://www.ncbi.nlm.nih.gov/gene/?term=RB4233 RB4239 RB4239 RB4239 2171936 2173615 - hypothetical protein gene gene2339 http://www.ncbi.nlm.nih.gov/gene/?term=RB4239 RB424 RB424 RB424 226068 226220 - hypothetical protein gene gene244 http://www.ncbi.nlm.nih.gov/gene/?term=RB424 RB4241 RB4241 RB4241 2173612 2174172 - RNA polymerase sigma-E factor PMID: 3052291 PMID: 8052622 best DB hits: BLAST: pir:H75550%3B RNA polymerase sigma-E factor - Deinococcus radiodurans%3B E%3D4e-08 embl:CAB72200.1%3B (AL138851) RNA polymerase sigma factor%3B E%3D1e-06 swissprot:P45215%3B YE59_HAEIN PROBABLE RNA POLYMERASE SIGMA FACTOR%3B E%3D2e-06 COG: DR0180%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D3e-09 PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D2.3e-05 gene gene2340 http://www.ncbi.nlm.nih.gov/gene/?term=RB4241 RB4243 RB4243 RB4243 2174155 2174331 + hypothetical protein gene gene2341 http://www.ncbi.nlm.nih.gov/gene/?term=RB4243 RB4245 RB4245 RB4245 2174390 2174839 + signal peptide PMID: 11679351 gene gene2342 http://www.ncbi.nlm.nih.gov/gene/?term=RB4245 RB4247 RB4247 hrpA hrpA 2174799 2178953 + ATP-dependent helicase hrpA PMID: 7899078 best DB hits: BLAST: pir:H83232%3B probable ATP-dependent helicase PA3297 [imported] -%3B E%3D0.0 pir:F82207%3B ATP-dependent helicase HrpA VC1382 [imported] - Vibrio%3B E%3D0.0 swissprot:P43329%3B HRPA_ECOLI ATP-DEPENDENT HELICASE HRPA -----%3B E%3D0.0 COG: PA3297%3B COG1643 HrpA-like helicases%3B E%3D0.0 PFAM: PF00005%3B ABC transporter%3B E%3D0.016 PF00270%3B DEAD/DEAH box helicase%3B E%3D0.66 PF00271%3B Helicase conserved C-terminal%3B E%3D1.3e-12 gene gene2343 http://www.ncbi.nlm.nih.gov/gene/?term=RB4247 RB4248 RB4248 RB4248 2178958 2179545 + hypothetical protein PMID: 21595285 best DB hits: BLAST: pir:E69833%3B conserved hypothetical protein yhjE - Bacillus subtilis%3B E%3D0.65 gene gene2344 http://www.ncbi.nlm.nih.gov/gene/?term=RB4248 RB4250 RB4250 RB4250 2179578 2179745 + hypothetical protein gene gene2345 http://www.ncbi.nlm.nih.gov/gene/?term=RB4250 RB4251 RB4251 RB4251 2179990 2180118 - hypothetical protein gene gene2346 http://www.ncbi.nlm.nih.gov/gene/?term=RB4251 RB4252 RB4252 RB4252 2180073 2180222 - hypothetical protein gene gene2347 http://www.ncbi.nlm.nih.gov/gene/?term=RB4252 RB4255 RB4255 RB4255 2180192 2180806 - hypothetical protein gene gene2348 http://www.ncbi.nlm.nih.gov/gene/?term=RB4255 RB4256 RB4256 RB4256 2180303 2181379 + signal peptide best DB hits: BLAST: gb:AAB41030.2%3B (U23947) LipA [Mycoplasma pulmonis]%3B E%3D0.31 gb:AAC55162.1%3B (U60315) MC034L [Molluscum contagiosum virus%3B E%3D0.69 pir:T02318%3B hypothetical protein F13P17.14 - Arabidopsis thaliana%3B E%3D0.82 gene gene2349 http://www.ncbi.nlm.nih.gov/gene/?term=RB4256 RB4258 RB4258 RB4258 2180966 2181475 - hypothetical protein gene gene2350 http://www.ncbi.nlm.nih.gov/gene/?term=RB4258 RB4259 RB4259 RB4259 2181412 2181696 + hypothetical protein gene gene2351 http://www.ncbi.nlm.nih.gov/gene/?term=RB4259 RB426 RB426 RB426 226258 229863 + hypothetical protein gene gene245 http://www.ncbi.nlm.nih.gov/gene/?term=RB426 RB4260 RB4260 RB4260 2181703 2182491 + hypothetical protein gene gene2352 http://www.ncbi.nlm.nih.gov/gene/?term=RB4260 RB4262 RB4262 RB4262 2182569 2182739 - hypothetical protein gene gene2353 http://www.ncbi.nlm.nih.gov/gene/?term=RB4262 RB4264 RB4264 RB4264 2182795 2183157 - signal peptide gene gene2354 http://www.ncbi.nlm.nih.gov/gene/?term=RB4264 RB4266 RB4266 RB4266 2183250 2183414 + hypothetical protein gene gene2355 http://www.ncbi.nlm.nih.gov/gene/?term=RB4266 RB4267 RB4267 RB4267 2183505 2184137 - A-type carbonic anhydrase PMID: 11065374 best DB hits: BLAST: ddbj:BAA82053.1%3B (AB022175) a-type carbonic anhydrase%3B E%3D2e-20 pir:F82479%3B carbonic anhydrase VCA0274 [imported] - Vibrio cholerae%3B E%3D6e-18 swissprot:P94170%3B CAH_ANASP CARBONIC ANHYDRASE PRECURSOR%3B E%3D4e-16 COG: VCA0274%3B COG3338 Carbonic anhydrase%3B E%3D6e-19 PFAM: PF00194%3B Eukaryotic-type carbonic anhy%3B E%3D4.1e-15 gene gene2356 http://www.ncbi.nlm.nih.gov/gene/?term=RB4267 RB4269 RB4269 RB4269 2184201 2185049 - glutamyl endopeptidase PMID: 1429718 PMID: 1346764 best DB hits: BLAST: swissprot:P80057%3B GSEP_BACLI GLUTAMYL ENDOPEPTIDASE PRECURSOR%3B E%3D9e-04 gb:AAB21460.1%3B glutamic acid specific endopeptidase%2C GSE%3Dserine%3B E%3D9e-04 gene gene2357 http://www.ncbi.nlm.nih.gov/gene/?term=RB4269 RB4270 RB4270 RB4270 2185118 2187721 - proteinase PMID: 9163424 best DB hits: BLAST: swissprot:P55440%3B Y4FB_RHISN HYPOTHETICAL 73.7 KD PROTEIN Y4FB%3B E%3D8e-65 pir:D75375%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D1e-41 pir:C83479%3B probable proteinase PA1327 [imported] - Pseudomonas%3B E%3D3e-31 COG: DR1599%3B COG0265 Trypsin-like serine proteases%2C typically%3B E%3D1e-42 PA1327%3B COG1864 DNA/RNA endonuclease G%2C NUC1%3B E%3D3e-32 PFAM: PF00089%3B Trypsin%3B E%3D0.24 PF01727%3B Domain of unknown function DUF%3B E%3D0.0043 PF00089%3B Trypsin%3B E%3D0.033 gene gene2358 http://www.ncbi.nlm.nih.gov/gene/?term=RB4270 RB4271 RB4271 RB4271 2187652 2190558 - hypothetical protein gene gene2359 http://www.ncbi.nlm.nih.gov/gene/?term=RB4271 RB4272 RB4272 RB4272 2190545 2191870 - hypothetical protein gene gene2360 http://www.ncbi.nlm.nih.gov/gene/?term=RB4272 RB4273 RB4273 RB4273 2191875 2193431 - peroxidase best DB hits: BLAST: ddbj:BAA77283.1%3B (AB013135) DyP [Galactomyces geotrichum]%3B E%3D4e-22 gb:AAB58908.1%3B (U77073) peroxidase [Polyporaceae sp.]%3B E%3D8e-22 pir:D75610%3B probable peroxidase - Deinococcus radiodurans (strain%3B E%3D8e-18 COG: DRA0145%3B COG2837 Predicted iron-dependent peroxidase%3B E%3D7e-19 gene gene2361 http://www.ncbi.nlm.nih.gov/gene/?term=RB4273 RB4275 RB4275 RB4275 2193465 2195783 - hypothetical protein best DB hits: BLAST: pir:T36192%3B hypothetical protein SCE29.13c - Streptomyces coelicolor%3B E%3D3e-04 gene gene2362 http://www.ncbi.nlm.nih.gov/gene/?term=RB4275 RB4276 RB4276 RB4276 2195832 2195945 + hypothetical protein gene gene2363 http://www.ncbi.nlm.nih.gov/gene/?term=RB4276 RB4277 RB4277 RB4277 2196029 2196151 + hypothetical protein gene gene2364 http://www.ncbi.nlm.nih.gov/gene/?term=RB4277 RB4278 RB4278 RB4278 2196122 2198887 - hypothetical protein PMID: 11266614 best DB hits: BLAST: embl:CAC01644.1%3B (AL391072) hypothetical protein SC9A4.17%3B E%3D4e-34 embl:CAB56738.1%3B (AL121600) membrane protein%3B E%3D1e-22 pir:D83260%3B hypothetical protein PA3080 [imported] - Pseudomonas%3B E%3D2e-08 PFAM: PF02012%3B BNR repeat%3B E%3D0.11 gene gene2365 http://www.ncbi.nlm.nih.gov/gene/?term=RB4278 RB4282 RB4282 RB4282 2199019 2199894 - matrix metalloproteinase-11 PMID: 1701851 PMID: 7657606 best DB hits: BLAST: swissprot:P24347%3B MM11_HUMAN STROMELYSIN-3 PRECURSOR (MATRIX%3B E%3D0.042 embl:CAA40918.1%3B (X57766) stromelysin-3 precursor [Homo sapiens]%3B E%3D0.051 ref:XP_009873.1%3B matrix metalloproteinase 11 (stromelysin 3)%3B E%3D0.051 gene gene2366 http://www.ncbi.nlm.nih.gov/gene/?term=RB4282 RB4283 RB4283 RB4283 2199963 2201462 - hypothetical protein PMID: 20437337 best DB hits: BLAST: pir:B83347%3B hypothetical protein PA2392 [imported] - Pseudomonas%3B E%3D1e-50 PFAM: PF02022%3B Integrase Zinc binding domain%3B E%3D0.25 gene gene2367 http://www.ncbi.nlm.nih.gov/gene/?term=RB4283 RB4284 RB4284 RB4284 2201461 2201634 + hypothetical protein gene gene2368 http://www.ncbi.nlm.nih.gov/gene/?term=RB4284 RB4285 RB4285 RB4285 2201611 2204136 - hypothetical protein gene gene2369 http://www.ncbi.nlm.nih.gov/gene/?term=RB4285 RB4286 RB4286 RB4286 2204140 2204865 - hypothetical protein PMID: 20437337 best DB hits: BLAST: pir:F83498%3B hypothetical protein PA1166 [imported] - Pseudomonas%3B E%3D0.035 COG: PA1166%3B COG0412 Dienelactone hydrolase and related enzymes%3B E%3D0.003 PFAM: PF01738%3B Dienelactone hydrolase%3B E%3D0.0023 gene gene2370 http://www.ncbi.nlm.nih.gov/gene/?term=RB4286 RB4288 RB4288 RB4288 2204880 2206004 - alkylhalidase-like protein best DB hits: BLAST: gb:AAG38844.1%3B (AY010120) reductasehalogenase%3B E%3D1e-11 pir:T30590%3B alkylhalidase homolog - Amycolatopsis orientalis -----%3B E%3D2e-08 pir:T34627%3B probable electron transfer oxidoreductase - Streptomyces%3B E%3D2e-06 COG: Rv1751%3B COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related%3B E%3D8e-05 Ta0326%3B COG0644 Dehydrogenases (flavoproteins)%3B E%3D0.002 BH1851%3B COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and%3B E%3D0.002 PFAM: PF01134%3B Glucose inhibited division prot%3B E%3D0.11 PF00732%3B GMC oxidoreductases%3B E%3D0.0013 PF01266%3B D-amino acid oxidase%3B E%3D0.0085 gene gene2371 http://www.ncbi.nlm.nih.gov/gene/?term=RB4288 RB4289 RB4289 RB4289 2206010 2207593 - 3-isopropylmalate dehydrogenase PMID: 11259647 best DB hits: BLAST: swissprot:O59930%3B LEU3_PHACH 3-ISOPROPYLMALATE DEHYDROGENASE%3B E%3D0.38 gene gene2372 http://www.ncbi.nlm.nih.gov/gene/?term=RB4289 RB4292 RB4292 RB4292 2207648 2210527 - hypothetical protein best DB hits: BLAST: pir:A58519%3B hypothetical 345 protein - Streptomyces coelicolor%3B E%3D3e-57 embl:CAC16730.1%3B (AL450289) conserved hypothetical protein%3B E%3D3e-50 gb:AAC59865.1%3B (U37373) up-regulated by thyroid hormone in%3B E%3D1e-44 COG: slr1608%3B COG2133 Glucose/sorbosone dehydrogenases%3B E%3D2e-16 gene gene2373 http://www.ncbi.nlm.nih.gov/gene/?term=RB4292 RB4293 RB4293 RB4293 2210560 2212074 - ovoperoxidase PMID: 9510026 best DB hits: BLAST: gb:AAB92243.1%3B (AF035381) ovoperoxidase [Lytechinus variegatus]%3B E%3D4e-08 pir:T24502%3B hypothetical protein T06D8.10 - Caenorhabditis elegans%3B E%3D4e-07 gb:AAF53674.2%3B (AE003659) CG10211 gene product [Drosophila%3B E%3D2e-06 gene gene2374 http://www.ncbi.nlm.nih.gov/gene/?term=RB4293 RB4294 RB4294 RB4294 2212149 2213069 - cysteine proteinase PMID: 10910347 PMID: 8325504 best DB hits: BLAST: pir:C82841%3B cysteine proteinase XF0156 [imported] - Xylella%3B E%3D1e-13 embl:CAC18648.1%3B (AJ302013) cathepsin B-like cysteine protease 3%3B E%3D0.006 pir:H71456%3B probable pyrolysin (EC 3.4.-.-) homolog PH0310%3B E%3D0.086 PFAM: PF00112%3B Papain family cysteine protease%3B E%3D0.019 gene gene2375 http://www.ncbi.nlm.nih.gov/gene/?term=RB4294 RB4296 RB4296 RB4296 2213209 2213931 - hypothetical protein gene gene2376 http://www.ncbi.nlm.nih.gov/gene/?term=RB4296 RB4297 RB4297 RB4297 2213903 2214127 + hypothetical protein gene gene2377 http://www.ncbi.nlm.nih.gov/gene/?term=RB4297 RB4298 RB4298 RB4298 2214175 2214720 - hypothetical protein gene gene2378 http://www.ncbi.nlm.nih.gov/gene/?term=RB4298 RB4299 RB4299 RB4299 2214533 2214823 + transposase PMID: 11756688 best DB hits: BLAST: gb:AAG58100.1%3B AE005527_3 (AE005527) unknown protein encoded by%3B E%3D0.003 gb:AAG53987.1%3B AF327445_1 (AF327445) transposase A%3B E%3D0.011 gb:AAF28119.1%3B AF153317_15 (AF153317) InsA [Shigella%3B E%3D0.026 PFAM: PF01381%3B Helix-turn-helix%3B E%3D0.53 PF01527%3B Transposase%3B E%3D1.5e-15 gene gene2379 http://www.ncbi.nlm.nih.gov/gene/?term=RB4299 RB43 RB43 RB43 20627 20791 - hypothetical protein gene gene25 http://www.ncbi.nlm.nih.gov/gene/?term=RB43 RB430 RB430 RB430 229809 231377 + hypothetical protein gene gene246 http://www.ncbi.nlm.nih.gov/gene/?term=RB430 RB4300 RB4300 RB4300 2214826 2215704 + hypothetical protein PMID: 10594830 best DB hits: BLAST: gb:AAA88919.1%3B (U13013) ORFB [Leptospira interrogans]%3B E%3D3e-47 gb:AAA88916.1%3B (U13012) ORFB [Leptospira interrogans]%3B E%3D1e-46 gb:AAC05649.1%3B (AF038931) probable transposase-related protein%3B E%3D1e-45 COG: DRB0019.2%3B COG2801 transposase%3B E%3D1e-35 PFAM: PF00665%3B Integrase core domain%3B E%3D4.8e-40 gene gene2380 http://www.ncbi.nlm.nih.gov/gene/?term=RB4300 RB4301 RB4301 RB4301 2215750 2216085 - hypothetical protein gene gene2381 http://www.ncbi.nlm.nih.gov/gene/?term=RB4301 RB4302 RB4302 RB4302 2216079 2216627 + hypothetical protein gene gene2382 http://www.ncbi.nlm.nih.gov/gene/?term=RB4302 RB4303 RB4303 RB4303 2216575 2217969 + transposase PMID: 11016950 best DB hits: BLAST: gb:AAG18661.1%3B (AE004971) Vng0021h [Halobacterium sp. NRC-1]%3B E%3D8e-22 gb:AAG18694.1%3B (AE004974) Vng0056h [Halobacterium sp. NRC-1]%3B E%3D8e-20 pir:T44318%3B transposase homolog [imported] - Vibrio cholerae -----%3B E%3D4e-15 gene gene2383 http://www.ncbi.nlm.nih.gov/gene/?term=RB4303 RB4304 RB4304 RB4304 2218057 2218530 - hypothetical protein gene gene2384 http://www.ncbi.nlm.nih.gov/gene/?term=RB4304 RB4305 RB4305 RB4305 2218595 2219737 - hypothetical protein PMID: 9371463 PMID: 10783239 best DB hits: BLAST: pir:F69192%3B conserved hypothetical protein MTH695 - Methanobacterium%3B E%3D2e-09 pir:B75516%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D7e-04 pir:H82146%3B conserved hypothetical protein VC1882 [imported] -%3B E%3D0.007 COG: MTH695%3B COG0577 Predicted permease%3B E%3D2e-10 PFAM: PF02687%3B Predicted permease%3B E%3D1.5e-21 gene gene2385 http://www.ncbi.nlm.nih.gov/gene/?term=RB4305 RB4306 RB4306 RB4306 2219834 2221207 - transposase PMID: 11292750 best DB hits: BLAST: swissprot:P03835%3B YI41_ECOLI INSERTION ELEMENT IS4 HYPOTHETICAL%3B E%3D0.030 embl:CAA57483.1%3B (X81894) ORF [Enterobacter agglomerans]%3B E%3D0.064 COG: yi41%3B COG3385 Predicted transposase%3B E%3D0.003 gene gene2386 http://www.ncbi.nlm.nih.gov/gene/?term=RB4306 RB4308 RB4308 RB4308 2221222 2221461 - hypothetical protein gene gene2387 http://www.ncbi.nlm.nih.gov/gene/?term=RB4308 RB4309 RB4309 RB4309 2221424 2222125 - ABC transporter ATP-binding protein PMID: 3288195 PMID: 3762695 best DB hits: BLAST: embl:CAA11724.1%3B (AJ223978) ABC transporter%2C YvrO%3B E%3D7e-48 gb:AAB89781.1%3B (AE001001) ABC transporter ATP-binding protein%3B E%3D4e-47 embl:CAC21614.1%3B (AL512667) ABC transporter ATP-binding%3B E%3D6e-47 COG: AF1469%3B COG1136 ABC-type (unclassified) transport system%2C ATPase%3B E%3D4e-48 PFAM: PF00005%3B ABC transporter%3B E%3D1.7e-57 gene gene2388 http://www.ncbi.nlm.nih.gov/gene/?term=RB4309 RB431 RB431 RB431 231337 231744 + signal peptide gene gene247 http://www.ncbi.nlm.nih.gov/gene/?term=RB431 RB4310 RB4310 RB4310 2222125 2223684 - hypothetical protein PMID: 9301333 PMID: 2249654 best DB hits: BLAST: swissprot:P32716%3B YJCR_ECOLI HYPOTHETICAL 36.9 KDA PROTEIN IN%3B E%3D3e-04 gb:AAG59280.1%3B AE005641_5 (AE005641) membrane protein%3B E%3D4e-04 pir:S76813%3B hypothetical protein sll1481 - Synechocystis sp. (strain%3B E%3D0.002 COG: yjcR%3B COG1566 Multidrug resistance efflux pump%3B E%3D2e-05 sll1481%3B COG0845 Membrane-fusion protein%3B E%3D2e-04 PA5159%3B COG1566 Multidrug resistance efflux pump%3B E%3D4e-04 PFAM: PF02017%3B CIDE-N domain%3B E%3D0.19 PF00364%3B Biotin-requiring enzyme%3B E%3D0.018 gene gene2389 http://www.ncbi.nlm.nih.gov/gene/?term=RB4310 RB4311 RB4311 RB4311 2223687 2224205 - signal peptide gene gene2390 http://www.ncbi.nlm.nih.gov/gene/?term=RB4311 RB4314 RB4314 RB4314 2224235 2225476 - hypothetical protein PMID: 12024217 best DB hits: BLAST: pir:F69192%3B conserved hypothetical protein MTH695 - Methanobacterium%3B E%3D0.005 COG: MTH695%3B COG0577 Predicted permease%3B E%3D5e-04 PFAM: PF02687%3B Predicted permease%3B E%3D1.4e-20 gene gene2391 http://www.ncbi.nlm.nih.gov/gene/?term=RB4314 RB4317 RB4317 RB4317 2225445 2225828 - signal peptide gene gene2392 http://www.ncbi.nlm.nih.gov/gene/?term=RB4317 RB4320 RB4320 RB4320 2226114 2226611 + hypothetical protein best DB hits: BLAST: gb:AAF50472.1%3B (AE003556) CG7986 gene product [alt 2] [Drosophila%3B E%3D0.38 gene gene2393 http://www.ncbi.nlm.nih.gov/gene/?term=RB4320 RB4322 RB4322 RB4322 2226866 2228239 + transposase PMID: 11292750 best DB hits: BLAST: swissprot:P03835%3B YI41_ECOLI INSERTION ELEMENT IS4 HYPOTHETICAL%3B E%3D0.030 embl:CAA57483.1%3B (X81894) ORF [Enterobacter agglomerans]%3B E%3D0.064 COG: yi41%3B COG3385 Predicted transposase%3B E%3D0.003 gene gene2394 http://www.ncbi.nlm.nih.gov/gene/?term=RB4322 RB4324 RB4324 RB4324 2228307 2228504 - hypothetical protein gene gene2395 http://www.ncbi.nlm.nih.gov/gene/?term=RB4324 RB4325 RB4325 RB4325 2228477 2228623 + hypothetical protein gene gene2396 http://www.ncbi.nlm.nih.gov/gene/?term=RB4325 RB4327 RB4327 RB4327 2228606 2230546 - multidrug ABC transporter PMID: 9661020 best DB hits: BLAST: gb:AAG27731.1%3B AF312031_1 (AF312031) multi-drug efflux transporter%3B E%3D8e-12 pir:B83476%3B probable transporter PA1361 [imported] - Pseudomonas%3B E%3D1e-11 pir:D81950%3B probable transmembrane efflux protein NMA1022 [imported]%3B E%3D8e-10 COG: PA1361%3B COG0534 Na+-driven multidrug efflux pump%3B E%3D1e-12 PFAM: PF01554%3B Uncharacterized membrane protein fam%3B E%3D0.0072 gene gene2397 http://www.ncbi.nlm.nih.gov/gene/?term=RB4327 RB4333 RB4333 RB4333 2230615 2231700 + galactosyltransferase best DB hits: BLAST: pir:S75877%3B hypothetical protein slr1166 - Synechocystis sp. (strain%3B E%3D1e-14 pir:A75033%3B probable hexosyltransferase (EC 2.4.1.-) PAB0827%3B E%3D2e-09 pir:D72511%3B probable hexosyltransferase (EC 2.4.1.-) APE2066%3B E%3D5e-09 COG: slr1166%3B COG0438 Predicted glycosyltransferases%3B E%3D1e-15 PAB2292%3B COG0297 Glycogen synthase%3B E%3D4e-05 BH1683%3B COG0438 Predicted glycosyltransferases%3B E%3D5e-05 PFAM: PF00534%3B Glycosyl transferases group 1%3B E%3D2.1e-12 gene gene2398 http://www.ncbi.nlm.nih.gov/gene/?term=RB4333 RB4336 RB4336 RB4336 2231697 2232815 + hypothetical protein gene gene2399 http://www.ncbi.nlm.nih.gov/gene/?term=RB4336 RB4337 RB4337 RB4337 2232812 2233672 + glycosyl transferase best DB hits: BLAST: swissprot:P39614%3B YWDF_BACSU HYPOTHETICAL 30.6 KDA PROTEIN IN%3B E%3D0.80 PFAM: PF00535%3B Glycosyl transferase%3B E%3D4.7e-07 gene gene2400 http://www.ncbi.nlm.nih.gov/gene/?term=RB4337 RB4338 RB4338 RB4338 2233636 2233809 - hypothetical protein gene gene2401 http://www.ncbi.nlm.nih.gov/gene/?term=RB4338 RB434 RB434 RB434 231791 231988 + hypothetical protein gene gene248 http://www.ncbi.nlm.nih.gov/gene/?term=RB434 RB4340 RB4340 RB4340 2233917 2234846 - transposase PMID: 11759840 best DB hits: BLAST: embl:CAB93418.1%3B (AL357524) transposase [Streptomyces%3B E%3D0.60 gene gene2402 http://www.ncbi.nlm.nih.gov/gene/?term=RB4340 RB4341 RB4341 RB4341 2234849 2235178 + hypothetical protein gene gene2403 http://www.ncbi.nlm.nih.gov/gene/?term=RB4341 RB4343 RB4343 RB4343 2235163 2235597 - hypothetical protein gene gene2404 http://www.ncbi.nlm.nih.gov/gene/?term=RB4343 RB4347 RB4347 RB4347 2235735 2236205 + hypothetical protein best DB hits: BLAST: pir:A83374%3B hypothetical protein PA2169 [imported] - Pseudomonas%3B E%3D6e-14 gene gene2405 http://www.ncbi.nlm.nih.gov/gene/?term=RB4347 RB4348 RB4348 RB4348 2236190 2236372 - hypothetical protein gene gene2406 http://www.ncbi.nlm.nih.gov/gene/?term=RB4348 RB4349 RB4349 RB4349 2236216 2236377 - hypothetical protein gene gene2407 http://www.ncbi.nlm.nih.gov/gene/?term=RB4349 RB4350 RB4350 RB4350 2236345 2236698 + hypothetical protein gene gene2408 http://www.ncbi.nlm.nih.gov/gene/?term=RB4350 RB4352 RB4352 RB4352 2236824 2237279 - hypothetical protein gene gene2409 http://www.ncbi.nlm.nih.gov/gene/?term=RB4352 RB4353 RB4353 RB4353 2237331 2237771 - hypothetical protein gene gene2410 http://www.ncbi.nlm.nih.gov/gene/?term=RB4353 RB4354 RB4354 RB4354 2237810 2238277 - hypothetical protein gene gene2411 http://www.ncbi.nlm.nih.gov/gene/?term=RB4354 RB4356 RB4356 RB4356 2238462 2238932 - hypothetical protein gene gene2412 http://www.ncbi.nlm.nih.gov/gene/?term=RB4356 RB4357 RB4357 RB4357 2238609 2239094 + hypothetical protein gene gene2413 http://www.ncbi.nlm.nih.gov/gene/?term=RB4357 RB4358 RB4358 RB4358 2239103 2239474 - hypothetical protein gene gene2414 http://www.ncbi.nlm.nih.gov/gene/?term=RB4358 RB4360 RB4360 RB4360 2239605 2240075 - hypothetical protein gene gene2415 http://www.ncbi.nlm.nih.gov/gene/?term=RB4360 RB4361 RB4361 RB4361 2240090 2240206 - hypothetical protein gene gene2416 http://www.ncbi.nlm.nih.gov/gene/?term=RB4361 RB4362 RB4362 RB4362 2240215 2240655 - hypothetical protein gene gene2417 http://www.ncbi.nlm.nih.gov/gene/?term=RB4362 RB4364 RB4364 RB4364 2240636 2240812 - signal peptide gene gene2418 http://www.ncbi.nlm.nih.gov/gene/?term=RB4364 RB4366 RB4366 RB4366 2240812 2241291 - hypothetical protein PMID: 0009611225 PMID: 0010550052 best DB hits: BLAST: pir:E70385%3B conserved hypothetical protein aq_987 - Aquifex aeolicus%3B E%3D6e-09 pir:D72545%3B hypothetical protein APE1648 - Aeropyrum pernix (strain%3B E%3D4e-06 pir:H70517%3B probable lppD protein - Mycobacterium tuberculosis%3B E%3D1e-05 COG: aq_987%3B COG2110 Uncharacterized ACR related to the C-terminal domain%3B E%3D5e-10 APE1648%3B COG2110 Uncharacterized ACR related to the C-terminal%3B E%3D4e-07 ymdB%3B COG2110 Uncharacterized ACR related to the C-terminal domain%3B E%3D4e-06 PFAM: PF01661%3B Appr-1-p processing enzyme family%3B E%3D9.4e-18 gene gene2419 http://www.ncbi.nlm.nih.gov/gene/?term=RB4366 RB4369 RB4369 RB4369 2241431 2241850 - hypothetical protein gene gene2420 http://www.ncbi.nlm.nih.gov/gene/?term=RB4369 RB437 RB437 RB437 232161 233408 + hypothetical protein best DB hits: PFAM: PF00589%3B Phage integrase%3B E%3D0.013 gene gene250 http://www.ncbi.nlm.nih.gov/gene/?term=RB437 RB4371 RB4371 RB4371 2241982 2242506 - hypothetical protein gene gene2421 http://www.ncbi.nlm.nih.gov/gene/?term=RB4371 RB4373 RB4373 RB4373 2242534 2242863 - hypothetical protein gene gene2422 http://www.ncbi.nlm.nih.gov/gene/?term=RB4373 RB4375 RB4375 RB4375 2242933 2252103 - extracellular nuclease best DB hits: BLAST: pir:S74915%3B extracellular nuclease - Synechocystis sp. (strain PCC%3B E%3D0.005 pir:C81675%3B polymorphic membrane protein BC family TC0694%3B E%3D0.10 COG: sll0656_1%3B COG3204 Uncharacterized BCR%3B E%3D0.002 PFAM: PF00404%3B Dockerin type I repeat%3B E%3D0.25 gene gene2423 http://www.ncbi.nlm.nih.gov/gene/?term=RB4375 RB4376 RB4376 katA katA 2252262 2253743 - catalase PMID: 9358059 best DB hits: BLAST: gb:AAB26985.1%3B (L48340) catalase [Methylobacterium extorquens]%3B E%3D0.0 swissprot:Q59714%3B CATA_PSEPU CATALASE ----- gb: AAB88219.1%3B E%3D1e-152 swissprot:P48062%3B CATA_BORPE CATALASE ----- pir: S60757%3B E%3D1e-152 COG: PA4236%3B COG0753 Catalase%3B E%3D1e-153 PFAM: PF01334%3B Bacterioferritin%3B E%3D0.24 PF00199%3B Catalase%3B E%3D1.7e-261 gene gene2424 http://www.ncbi.nlm.nih.gov/gene/?term=RB4376 RB4377 RB4377 RB4377 2253830 2255017 - hypothetical protein best DB hits: BLAST: embl:CAB83202.1%3B (AJ277117) membrane protein%3B E%3D4e-30 pir:H82825%3B transport protein XF0281 [imported] - Xylella fastidiosa%3B E%3D4e-28 swissprot:O51039%3B Y006_BORBU HYPOTHETICAL PROTEIN BB0006 -----%3B E%3D2e-13 COG: XF0281%3B COG0628 Predicted permease%3B E%3D4e-29 PFAM: PF01594%3B Domain of unknown function DUF20%3B E%3D2.7e-06 gene gene2425 http://www.ncbi.nlm.nih.gov/gene/?term=RB4377 RB4378 RB4378 RB4378 2255014 2255166 - hypothetical protein gene gene2426 http://www.ncbi.nlm.nih.gov/gene/?term=RB4378 RB4381 RB4381 RB4381 2255442 2255621 - hypothetical protein gene gene2427 http://www.ncbi.nlm.nih.gov/gene/?term=RB4381 RB4382 RB4382 RB4382 2255618 2257285 - diaminopimelate decarboxylase PMID: 6350601 PMID: 89056708 PMID: 94237165 best DB hits: BLAST: swissprot:P55709%3B Y4YA_RHISN HYPOTHETICAL 49.9 KD PROTEIN Y4YA%3B E%3D3e-40 gb:AAG45731.1%3B AF229441_2 (AF229441) y4yA [Sinorhizobium fredii]%3B E%3D3e-40 gb:AAG45729.1%3B AF229440_2 (AF229440) y4yA [Sinorhizobium fredii]%3B E%3D3e-33 COG: aq_728%3B COG0019 Diaminopimelate decarboxylase%3B E%3D7e-08 PA4839%3B COG1166 Arginine decarboxylase (spermidine biosynthesis)%3B E%3D5e-05 XF1116_2%3B COG0019 Diaminopimelate decarboxylase%3B E%3D5e-05 PFAM: PF02784%3B Pyridoxal-dependent decarboxyla%3B E%3D5.9e-08 gene gene2428 http://www.ncbi.nlm.nih.gov/gene/?term=RB4382 RB4383 RB4383 RB4383 2257131 2258768 - hypothetical protein best DB hits: BLAST: gb:AAG56655.1%3B AE005390_2 (AE005390) orf%2C hypothetical protein%3B E%3D5e-05 swissprot:P77148%3B YDHS_ECOLI HYPOTHETICAL 60.8 KDA PROTEIN IN%3B E%3D1e-04 gene gene2429 http://www.ncbi.nlm.nih.gov/gene/?term=RB4383 RB4386 RB4386 RB4386 2258765 2259814 - 2%2C3-diaminopropionate biosynthesis protein SbnA PMID: 93345669 best DB hits: BLAST: swissprot:Q44004%3B CYSM_ALCEU CYSTEINE SYNTHASE (O-ACETYLSERINE%3B E%3D2e-35 pir:T43792%3B cysteine synthase (EC 4.2.99.8) cysK [similarity] -%3B E%3D1e-31 pir:H81161%3B probable cysteine synthase (EC 4.2.99.8) NMA0974%3B E%3D3e-31 COG: NMB0763%3B COG0031 Cysteine synthase%3B E%3D2e-32 PFAM: PF00291%3B Pyridoxal-phosphate dependent enzyme%3B E%3D9.2e-57 gene gene2430 http://www.ncbi.nlm.nih.gov/gene/?term=RB4386 RB4389 RB4389 RB4389 2259805 2260005 - hypothetical protein gene gene2431 http://www.ncbi.nlm.nih.gov/gene/?term=RB4389 RB439 RB439 RB439 233429 233737 + signal peptide gene gene251 http://www.ncbi.nlm.nih.gov/gene/?term=RB439 RB4390 RB4390 RB4390 2260002 2260859 - hypothetical protein PMID: 9371463 best DB hits: BLAST: pir:H69043%3B conserved hypothetical protein MTH1330 -%3B E%3D0.004 swissprot:Q50500%3B YE63_METTH HYPOTHETICAL PROTEIN MTH1463 (ORF11)%3B E%3D0.005 pir:A69088%3B conserved hypothetical protein MTH1653 -%3B E%3D0.010 COG: MTH1330%3B COG3271 Predicted double-glycine peptidase%3B E%3D4e-04 gene gene2432 http://www.ncbi.nlm.nih.gov/gene/?term=RB4390 RB4392 RB4392 RB4392 2260905 2261108 + hypothetical protein gene gene2433 http://www.ncbi.nlm.nih.gov/gene/?term=RB4392 RB4393 RB4393 RB4393 2261154 2261375 + hypothetical protein gene gene2434 http://www.ncbi.nlm.nih.gov/gene/?term=RB4393 RB4394 RB4394 RB4394 2261372 2261938 + proteinase I PMID: 96196168 best DB hits: BLAST: pir:T34745%3B probable proteinase pfpI - Streptomyces coelicolor%3B E%3D6e-55 pir:F75423%3B proteinase I - Deinococcus radiodurans (strain R1)%3B E%3D1e-50 pir:E83601%3B proteinase PfpI PA0355 [imported] - Pseudomonas%3B E%3D3e-40 COG: DR1199%3B COG0693 intracellular protease/amidase%3B E%3D1e-51 BH1980%3B COG0753 Catalase%3B E%3D4e-07 BB0621%3B COG0693 intracellular protease/amidase%3B E%3D4e-07 PFAM: PF00117%3B Glutamine amidotransferase class-I%3B E%3D0.13 PF01965%3B ThiJ/PfpI family%3B E%3D1.1e-61 gene gene2435 http://www.ncbi.nlm.nih.gov/gene/?term=RB4394 RB4395 RB4395 RB4395 2262023 2262535 + macrophage infectivity potentiator protein Mip PMID: 8007818 best DB hits: BLAST: gb:AAB31024.1%3B (S71704) Mip%3D24 kda macrophage infectivity%3B E%3D2e-09 gb:AAG57782.1%3B AE005496_5 (AE005496) Z3974 gene product%3B E%3D4e-06 pir:E83611%3B conserved hypothetical protein PA0269 [imported] -%3B E%3D6e-06 COG: PA0269%3B COG2128 Uncharacterized ACR%3B E%3D6e-07 gene gene2436 http://www.ncbi.nlm.nih.gov/gene/?term=RB4395 RB4396 RB4396 RB4396 2262532 2263887 + glutathione reductase PMID: 7559423 best DB hits: BLAST: swissprot:P48638%3B GSHR_ANASP GLUTATHIONE REDUCTASE (GR) (GRASE)%3B E%3D7e-50 embl:CAA12270.1%3B (AJ224977) ORF 4 [Sphingomonas sp. RW5]%3B E%3D2e-49 gb:AAK04944.1%3B AE006318_7 (AE006318) glutathione reductase (EC%3B E%3D6e-49 COG: gor%3B COG1249 Dihydrolipoamide dehydrogenase/glutathione%3B E%3D4e-49 PFAM: PF00996%3B GDP dissociation inhibitor%3B E%3D0.34 PF00070%3B Pyridine nucleotide-disulphide%3B E%3D3.3e-62 PF02852%3B Pyridine nucleotide-disulphide%3B E%3D3.4e-06 gene gene2437 http://www.ncbi.nlm.nih.gov/gene/?term=RB4396 RB4397 RB4397 RB4397 2263976 2264143 + hypothetical protein gene gene2438 http://www.ncbi.nlm.nih.gov/gene/?term=RB4397 RB4398 RB4398 RB4398 2264154 2264261 - hypothetical protein gene gene2439 http://www.ncbi.nlm.nih.gov/gene/?term=RB4398 RB4399 RB4399 RB4399 2264251 2265237 - quinone oxidoreductase PMID: 7602590 best DB hits: BLAST: embl:CAB59716.1%3B (AL132707) zinc-binding oxidoreductase%3B E%3D3e-31 pir:T10203%3B hypothetical protein F25G13.100 - Arabidopsis thaliana%3B E%3D2e-28 embl:CAC14345.1%3B (AL445945) zinc-binding oxidoreductase%3B E%3D1e-26 COG: VC0552%3B COG0604 NADPH:quinone reductase and related Zn-dependent%3B E%3D2e-26 PFAM: PF00107%3B Zinc-binding dehydrogenases%3B E%3D5.2e-48 gene gene2440 http://www.ncbi.nlm.nih.gov/gene/?term=RB4399 RB44 RB44 RB44 20825 21127 - hypothetical protein gene gene26 http://www.ncbi.nlm.nih.gov/gene/?term=RB44 RB4400 RB4400 RB4400 2265206 2265382 - hypothetical protein gene gene2441 http://www.ncbi.nlm.nih.gov/gene/?term=RB4400 RB4402 RB4402 RB4402 2265340 2265501 + hypothetical protein gene gene2442 http://www.ncbi.nlm.nih.gov/gene/?term=RB4402 RB4404 RB4404 RB4404 2265539 2266447 + oxidoreductase YhxD best DB hits: BLAST: swissprot:P40398%3B YHXD_BACSU HYPOTHETICAL OXIDOREDUCTASE IN%3B E%3D2e-67 swissprot:P80873%3B GS39_BACSU GENERAL STRESS PROTEIN 39 (GSP39)%3B E%3D3e-65 gb:AAG02162.1%3B AF212041_18 (AF212041) ribitol dehydrogenase%3B E%3D8e-65 COG: BS_yhxD%3B COG1028 Dehydrogenases with different specificities%3B E%3D2e-68 BH1511%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D1e-64 DRA0364%3B COG1028 Dehydrogenases with different specificities%3B E%3D1e-62 PFAM: PF00106%3B short chain dehydrogenase%3B E%3D8.7e-53 PF00678%3B Short chain dehydrogenase/reduct%3B E%3D5.5e-09 gene gene2443 http://www.ncbi.nlm.nih.gov/gene/?term=RB4404 RB4405 RB4405 RB4405 2266535 2266894 - DNA-binding protein best DB hits: BLAST: pir:T36457%3B probable DNA-binding protein - Streptomyces coelicolor%3B E%3D2e-25 embl:CAB89026.1%3B (AL353870) hypothetical protein SC6F7.18c.%3B E%3D0.002 gene gene2444 http://www.ncbi.nlm.nih.gov/gene/?term=RB4405 RB4407 RB4407 RB4407 2266905 2267123 + hypothetical protein gene gene2445 http://www.ncbi.nlm.nih.gov/gene/?term=RB4407 RB4408 RB4408 RB4408 2267081 2268175 - cytochrome c-552 PMID: 8973648 PMID: 91255245 best DB hits: BLAST: swissprot:P74917%3B C552_THIFE CYTOCHROME C-552 PRECURSOR (C552)%3B E%3D8e-11 pir:B83334%3B probable cytochrome c PA2482 [imported] - Pseudomonas%3B E%3D5e-10 pir:F81040%3B cytochrome C4 NMB1805 [imported] - Neisseria%3B E%3D8e-10 COG: PA2482%3B COG2863 Cytochrome c553%3B E%3D4e-11 VC1439%3B COG2010 Cytochrome c%2C mono- and diheme variants%3B E%3D0.002 gene gene2446 http://www.ncbi.nlm.nih.gov/gene/?term=RB4408 RB4410 RB4410 RB4410 2268218 2268889 - signal peptide PMID: 11481431 gene gene2447 http://www.ncbi.nlm.nih.gov/gene/?term=RB4410 RB4414 RB4414 RB4414 2268889 2269314 - hypothetical protein best DB hits: PFAM: PF01569%3B PAP2 superfamily%3B E%3D0.35 gene gene2448 http://www.ncbi.nlm.nih.gov/gene/?term=RB4414 RB4416 RB4416 RB4416 2269302 2271803 - cytochrome c oxidase polypeptide I PMID: 1847686 PMID: 94364936 PMID: 83257235 PMID: 88054981 best DB hits: BLAST: gb:AAD20227.1%3B (AF111945) quinol oxidase subunit I [Rhodobacter%3B E%3D1e-153 swissprot:P24010%3B COX1_BACSU CYTOCHROME C OXIDASE POLYPEPTIDE I%3B E%3D1e-102 pir:S14397%3B cytochrome-c oxidase (EC 1.9.3.1) chain I - Bacillus%3B E%3D1e-102 COG: BS_ctaD%3B COG0843 Heme/copper-type cytochrome/quinol oxidases%2C%3B E%3D1e-103 BH2614%3B COG0843 Heme/copper-type cytochrome/quinol oxidases%2C subunit%3B E%3D1e-97 BS_qoxB%3B COG0843 Heme/copper-type cytochrome/quinol oxidases%2C%3B E%3D2e-90 PFAM: PF00115%3B Cytochrome C and Quinol oxida%3B E%3D2e-160 gene gene2449 http://www.ncbi.nlm.nih.gov/gene/?term=RB4416 RB4417 RB4417 RB4417 2271800 2272906 - cytochrome-c oxidase chain II/c precursor PMID: 89231697 PMID: 91161592 best DB hits: BLAST: pir:A23711%3B cytochrome-c oxidase (EC 1.9.3.1) chain IIc precursor -%3B E%3D3e-42 swissprot:Q04441%3B COX2_BACFI CYTOCHROME C OXIDASE POLYPEPTIDE II%3B E%3D5e-38 ddbj:BAB06334.1%3B (AP001516) cytochrome caa3 oxidase (subunit II)%3B E%3D2e-35 COG: BH2615_1%3B COG1622 Heme/copper-type cytochrome/quinol oxidases%2C%3B E%3D2e-21 XF1390%3B COG1622 Heme/copper-type cytochrome/quinol oxidases%2C subunit%3B E%3D1e-14 slr1136%3B COG1622 Heme/copper-type cytochrome/quinol oxidases%2C%3B E%3D3e-14 PFAM: PF00116%3B Cytochrome C oxidase subunit II%2C%3B E%3D6.3e-25 PF00034%3B Cytochrome c%3B E%3D7e-11 gene gene2450 http://www.ncbi.nlm.nih.gov/gene/?term=RB4417 RB4419 RB4419 RB4419 2272912 2273448 + magnesium ABC transporter ATPase best DB hits: BLAST: pir:G70340%3B Mg(2+) transport ATPase - Aquifex aeolicus ----- gb:%3B E%3D2e-10 gb:AAD43996.1%3B (U59485) attV [Agrobacterium tumefaciens]%3B E%3D1e-09 ddbj:BAB06944.1%3B (AP001518) magnesium (Mg2+) transporter%3B E%3D1e-09 COG: aq_447%3B COG1285 Uncharacterized membrane protein%3B E%3D2e-11 PFAM: PF02308%3B MgtC family%3B E%3D1.4e-20 gene gene2451 http://www.ncbi.nlm.nih.gov/gene/?term=RB4419 RB442 RB442 RB442 233878 234756 + hypothetical protein gene gene252 http://www.ncbi.nlm.nih.gov/gene/?term=RB442 RB4420 RB4420 RB4420 2273473 2274093 - DedA family protein best DB hits: BLAST: pir:B75253%3B DedA family protein - Deinococcus radiodurans (strain%3B E%3D2e-38 pir:S76640%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D1e-33 swissprot:Q48630%3B APL_LACLC ALKALINE PHOSPHATASE LIKE PROTEIN%3B E%3D1e-29 COG: DR2612%3B COG0586 Uncharacterized membrane-associated protein%3B E%3D2e-39 PFAM: PF00452%3B Apoptosis regulator proteins%2C Bcl-2%3B E%3D0.022 PF00597%3B DedA family%3B E%3D1.1e-09 gene gene2452 http://www.ncbi.nlm.nih.gov/gene/?term=RB4420 RB4422 RB4422 RB4422 2274125 2274595 - chemotaxis related cheY1 protein PMID: 95214091 best DB hits: BLAST: pir:F82618%3B chemotaxis-related protein kinase XF1952 [imported] -%3B E%3D2e-09 gb:AAC25076.1%3B (AF044495) CheY homolog [Agrobacterium%3B E%3D5e-09 pir:S75938%3B chemotaxis protein cheA (EC 2.7.-.-) - Synechocystis sp.%3B E%3D6e-09 COG: sll0043_4%3B COG0784 CheY-like receiver domains%3B E%3D6e-10 CPn0586%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D8e-08 sll0039%3B COG0784 CheY-like receiver domains%3B E%3D8e-08 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D8e-16 gene gene2453 http://www.ncbi.nlm.nih.gov/gene/?term=RB4422 RB4423 RB4423 RB4423 2274588 2275085 - cytidine and deoxycytidylate deaminase PMID: 92232718 PMID: 93155023 best DB hits: BLAST: pir:A83333%3B probable deaminase PA2499 [imported] - Pseudomonas%3B E%3D3e-13 embl:CAC18685.1%3B (AL451182) deaminase [Streptomyces%3B E%3D1e-12 embl:CAA07230.1%3B (AJ006764) deoxycytidylate deaminase%3B E%3D3e-12 COG: PA2499%3B COG0590 Cytosine/adenosine deaminases%3B E%3D3e-14 PFAM: PF00383%3B Cytidine and deoxycytidylate de%3B E%3D2.6e-19 gene gene2454 http://www.ncbi.nlm.nih.gov/gene/?term=RB4423 RB4425 RB4425 RB4425 2275100 2275483 + hypothetical protein gene gene2455 http://www.ncbi.nlm.nih.gov/gene/?term=RB4425 RB4426 RB4426 RB4426 2275604 2275786 - hypothetical protein best DB hits: BLAST: pir:A69202%3B conserved hypothetical protein MTH763 - Methanobacterium%3B E%3D0.79 gene gene2456 http://www.ncbi.nlm.nih.gov/gene/?term=RB4426 RB4427 RB4427 RB4427 2275637 2275903 + hypothetical protein gene gene2457 http://www.ncbi.nlm.nih.gov/gene/?term=RB4427 RB4428 RB4428 RB4428 2275865 2275996 - hypothetical protein gene gene2458 http://www.ncbi.nlm.nih.gov/gene/?term=RB4428 RB4429 RB4429 RB4429 2275996 2276265 + hypothetical protein PMID: 11743193 best DB hits: BLAST: embl:CAC16998.1%3B (AL450350) hypothetical protein [Streptomyces%3B E%3D0.45 gene gene2459 http://www.ncbi.nlm.nih.gov/gene/?term=RB4429 RB443 RB443 RB443 234881 235261 + hypothetical protein gene gene253 http://www.ncbi.nlm.nih.gov/gene/?term=RB443 RB4432 RB4432 RB4432 2276333 2277139 + acetoin dehydrogenase best DB hits: BLAST: gb:AAG57269.1%3B AE005445_6 (AE005445) oxidoreductase%3B E%3D4e-41 swissprot:P33368%3B YOHF_ECOLI HYPOTHETICAL OXIDOREDUCTASE IN%3B E%3D8e-41 pir:G75333%3B 3-oxoacyl-acyl carrier protein reductase - Deinococcus%3B E%3D7e-33 COG: yohF%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D8e-42 BS_ycdF%3B COG1028 Dehydrogenases with different specificities%3B E%3D2e-31 TM1724%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D4e-25 PFAM: PF00106%3B short chain dehydrogenase%3B E%3D1.7e-42 PF00678%3B Short chain dehydrogenase/reduct%3B E%3D1.2e-07 gene gene2460 http://www.ncbi.nlm.nih.gov/gene/?term=RB4432 RB4433 RB4433 RB4433 2277208 2277696 + DNA protection during starvation protein PMID: 1340475 PMID: 8021175 best DB hits: BLAST: pir:T35689%3B hypothetical protein SC7C7.11 SC7C7.11 - Streptomyces%3B E%3D5e-30 swissprot:Q47953%3B FTPA_HAEDU FINE TANGLED PILI MAJOR SUBUNIT (24%3B E%3D1e-17 embl:CAB61290.1%3B (AL132991) DNA-binding protein%3B E%3D3e-16 COG: dps%3B COG0783 Starvation-inducible DNA-binding protein%3B E%3D1e-14 PFAM: PF02047%3B Dps protein family%3B E%3D4.1e-45 gene gene2461 http://www.ncbi.nlm.nih.gov/gene/?term=RB4433 RB4436 RB4436 RB4436 2277820 2278092 + signal peptide gene gene2462 http://www.ncbi.nlm.nih.gov/gene/?term=RB4436 RB4438 RB4438 RB4438 2278247 2278729 + general stress protein 26 PMID: 8012595 best DB hits: BLAST: pir:D75431%3B probable general stress protein 26 - Deinococcus%3B E%3D4e-18 pir:D75427%3B hypothetical protein - Deinococcus radiodurans (strain%3B E%3D2e-07 swissprot:P80238%3B GS26_BACSU GENERAL STRESS PROTEIN 26 (GSP26)%3B E%3D0.10 gene gene2463 http://www.ncbi.nlm.nih.gov/gene/?term=RB4438 RB444 RB444 RB444 235258 236805 + ATP-binding protein PMID: 8843436 best DB hits: BLAST: embl:CAC08270.1%3B (AL392146) ATP-binding protein%3B E%3D1e-37 gene gene254 http://www.ncbi.nlm.nih.gov/gene/?term=RB444 RB4440 RB4440 RB4440 2278882 2279925 + hypothetical protein best DB hits: BLAST: embl:CAC01649.1%3B (AL391072) conserved hypothetical protein%3B E%3D1e-06 pir:B83370%3B conserved hypothetical protein PA2211 [imported] -%3B E%3D5e-04 swissprot:P55567%3B Y4MH_RHISN HYPOTHETICAL 33.9 KD PROTEIN Y4MH%3B E%3D5e-04 gene gene2464 http://www.ncbi.nlm.nih.gov/gene/?term=RB4440 RB4443 RB4443 RB4443 2279973 2280143 - hypothetical protein gene gene2465 http://www.ncbi.nlm.nih.gov/gene/?term=RB4443 RB4444 RB4444 RB4444 2280283 2282394 + hypothetical protein PMID: 8843436 best DB hits: BLAST: embl:CAB56147.1%3B (AL117669) hypothetical protein [Streptomyces%3B E%3D3e-07 embl:CAB55704.1%3B (AL117387) secreted protein%3B E%3D0.014 gene gene2466 http://www.ncbi.nlm.nih.gov/gene/?term=RB4444 RB4448 RB4448 RB4448 2282361 2282657 - hypothetical protein gene gene2467 http://www.ncbi.nlm.nih.gov/gene/?term=RB4448 RB445 RB445 RB445 236794 236904 - hypothetical protein gene gene255 http://www.ncbi.nlm.nih.gov/gene/?term=RB445 RB4451 RB4451 RB4451 2282709 2282987 - hypothetical protein gene gene2468 http://www.ncbi.nlm.nih.gov/gene/?term=RB4451 RB4452 RB4452 RB4452 2282954 2283214 + hypothetical protein gene gene2469 http://www.ncbi.nlm.nih.gov/gene/?term=RB4452 RB4454 RB4454 FliC FliC 2283201 2285420 + flagellin PMID: 2498283 PMID: 2498284 PMID: 814121 best DB hits: BLAST: gb:AAC27808.1%3B (AF069392) polar flagellin [Vibrio%3B E%3D2e-17 gb:AAC01555.1%3B (AF007122) flagellin [Vibrio cholerae]%3B E%3D4e-17 pir:C82112%3B flagellin FlaE VC2144 [imported] - Vibrio cholerae%3B E%3D4e-17 COG: VC2144%3B COG1344 Flagellin and related hook-associated proteins%3B E%3D4e-18 PFAM: PF00669%3B Bacterial flagellin N-terminus%3B E%3D1e-26 PF00700%3B Bacterial flagellin C-terminus%3B E%3D1.2e-12 gene gene2470 http://www.ncbi.nlm.nih.gov/gene/?term=RB4454 RB4455 RB4455 RB4455 2285426 2285650 - hypothetical protein gene gene2471 http://www.ncbi.nlm.nih.gov/gene/?term=RB4455 RB4456 RB4456 RB4456 2285620 2285814 + hypothetical protein gene gene2472 http://www.ncbi.nlm.nih.gov/gene/?term=RB4456 RB4457 RB4457 RB4457 2285628 2285924 + hypothetical protein gene gene2473 http://www.ncbi.nlm.nih.gov/gene/?term=RB4457 RB4458 RB4458 RB4458 2286061 2287089 - hypothetical protein PMID: 8905231 best DB hits: BLAST: pir:S76294%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D6e-19 gb:AAD00285.1%3B (U78604) membrane protein [Streptococcus%3B E%3D2e-12 gb:AAK05280.1%3B AE006350_7 (AE006350) permease [Lactococcus lactis%3B E%3D4e-10 COG: slr0784%3B COG0628 Predicted permease%3B E%3D5e-20 PFAM: PF01594%3B Domain of unknown function DUF20%3B E%3D1.9e-45 gene gene2474 http://www.ncbi.nlm.nih.gov/gene/?term=RB4458 RB4459 RB4459 RB4459 2287089 2288477 - hypothetical protein PMID: 98344137 best DB hits: BLAST: swissprot:P11666%3B YGGB_ECOLI HYPOTHETICAL 30.9 KDA PROTEIN IN%3B E%3D5e-27 pir:D75011%3B hypothetical protein PAB1281 - Pyrococcus abyssi (strain%3B E%3D1e-22 pir:E71140%3B hypothetical protein PH0336 - Pyrococcus horikoshii%3B E%3D2e-22 COG: yggB%3B COG0668 Small-conductance mechanosensitive channel%3B E%3D5e-28 PA5022%3B COG3264 Small-conductance mechanosensitive channel%3B E%3D5e-13 PFAM: PF00924%3B Uncharacterized protein family%3B E%3D4.4e-52 gene gene2475 http://www.ncbi.nlm.nih.gov/gene/?term=RB4459 RB446 RB446 RB446 236928 237320 - hypothetical protein PMID: 9266672 best DB hits: BLAST: swissprot:O15442%3B 239A_HUMAN ADULT BRAIN PROTEIN 239 (239AB)%3B E%3D4e-19 gb:AAC51673.2%3B (U84894) 239AB [Homo sapiens]%3B E%3D4e-19 prf:2122285A%3B 239FB gene [Homo sapiens]%3B E%3D1e-17 COG: APE2283%3B COG2129 Predicted phosphoesterases%2C related to the Icc%3B E%3D4e-06 gene gene256 http://www.ncbi.nlm.nih.gov/gene/?term=RB446 RB4460 RB4460 RB4460 2288428 2289696 - hypothetical protein PMID: 9634230 best DB hits: BLAST: swissprot:Q10616%3B YC90_MYCTU HYPOTHETICAL 56.0 KDA PROTEIN RV1290C%3B E%3D4e-35 pir:T35776%3B hypothetical protein SC8A6.09c SC8A6.09 - Streptomyces%3B E%3D1e-23 gb:AAK03181.1%3B (AE006150) unknown [Pasteurella multocida]%3B E%3D1e-11 gene gene2476 http://www.ncbi.nlm.nih.gov/gene/?term=RB4460 RB4461 RB4461 RB4461 2289693 2291114 - hypothetical protein PMID: 9679194 best DB hits: BLAST: pir:H82702%3B small conductance mechanosensitive ion channel XF1258%3B E%3D2e-17 pir:E71140%3B hypothetical protein PH0336 - Pyrococcus horikoshii%3B E%3D1e-15 pir:B83096%3B conserved hypothetical protein PA4394 [imported] -%3B E%3D2e-15 COG: XF1258%3B COG0668 Small-conductance mechanosensitive channel%3B E%3D2e-18 HI0195.1%3B COG3264 Small-conductance mechanosensitive channel%3B E%3D1e-09 PFAM: PF00924%3B Uncharacterized protein family UPF00%3B E%3D6.2e-44 gene gene2477 http://www.ncbi.nlm.nih.gov/gene/?term=RB4461 RB4462 RB4462 RB4462 2291005 2291400 - hypothetical protein gene gene2478 http://www.ncbi.nlm.nih.gov/gene/?term=RB4462 RB4464 RB4464 RB4464 2291404 2292075 - signal peptide gene gene2479 http://www.ncbi.nlm.nih.gov/gene/?term=RB4464 RB4465 RB4465 RB4465 2292091 2292264 - hypothetical protein gene gene2480 http://www.ncbi.nlm.nih.gov/gene/?term=RB4465 RB4466 RB4466 RB4466 2292230 2292367 + hypothetical protein gene gene2481 http://www.ncbi.nlm.nih.gov/gene/?term=RB4466 RB4467 RB4467 RB4467 2292401 2293501 + hypothetical protein PMID: 9278503 best DB hits: BLAST: pir:F82056%3B conserved hypothetical protein VC2610 [imported] -%3B E%3D3e-26 pir:F83600%3B conserved hypothetical protein PA0368 [imported] -%3B E%3D5e-24 swissprot:P45524%3B YHET_ECOLI HYPOTHETICAL 38.5 KD PROTEIN IN%3B E%3D2e-23 COG: VC2610%3B COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold%3B E%3D3e-27 YMR210w%3B COG0429 Predicted hydrolase of the alpha/beta-hydrolase%3B E%3D1e-23 PFAM: PF00561%3B alpha/beta hydrolase fold%3B E%3D3.9e-06 gene gene2482 http://www.ncbi.nlm.nih.gov/gene/?term=RB4467 RB4468 RB4468 RB4468 2293616 2294104 - hypothetical protein gene gene2483 http://www.ncbi.nlm.nih.gov/gene/?term=RB4468 RB4470 RB4470 RB4470 2294167 2294676 - signal peptide gene gene2484 http://www.ncbi.nlm.nih.gov/gene/?term=RB4470 RB4473 RB4473 RB4473 2294808 2294981 - hypothetical protein gene gene2485 http://www.ncbi.nlm.nih.gov/gene/?term=RB4473 RB4474 RB4474 RB4474 2295048 2295554 + hypothetical protein PMID: 8265357 best DB hits: BLAST: pir:F83054%3B conserved hypothetical protein PA4738 [imported] -%3B E%3D3e-06 swissprot:P32691%3B YJBJ_ECOLI PROTEIN YJBJ ----- pir: D65212%3B E%3D2e-05 embl:CAB98302.2%3B (AL390114) probable 8.3 Kd protein in dinf-qor%3B E%3D0.35 COG: PA4738%3B COG3237 Uncharacterized BCR%3B E%3D3e-07 gene gene2486 http://www.ncbi.nlm.nih.gov/gene/?term=RB4474 RB4476 RB4476 RB4476 2295557 2295943 + hypothetical protein gene gene2487 http://www.ncbi.nlm.nih.gov/gene/?term=RB4476 RB4477 RB4477 RB4477 2295940 2296149 + hypothetical protein gene gene2488 http://www.ncbi.nlm.nih.gov/gene/?term=RB4477 RB4478 RB4478 RB4478 2296122 2296640 + signal peptide gene gene2489 http://www.ncbi.nlm.nih.gov/gene/?term=RB4478 RB448 RB448 RB448 237375 237587 - hypothetical protein PMID: 9266672 best DB hits: BLAST: swissprot:O15442%3B 239A_HUMAN ADULT BRAIN PROTEIN 239 (239AB)%3B E%3D0.014 gb:AAC51673.2%3B (U84894) 239AB [Homo sapiens]%3B E%3D0.014 ref:XP_013018.1%3B chromosome 22 open reading frame 1 [Homo%3B E%3D0.014 PFAM: PF01143%3B Uncharacterized phosphoesterase fami%3B E%3D0.00034 gene gene257 http://www.ncbi.nlm.nih.gov/gene/?term=RB448 RB4480 RB4480 RB4480 2296646 2296915 + hypothetical protein gene gene2490 http://www.ncbi.nlm.nih.gov/gene/?term=RB4480 RB4482 RB4482 RB4482 2296905 2297240 - hypothetical protein gene gene2491 http://www.ncbi.nlm.nih.gov/gene/?term=RB4482 RB4484 RB4484 RB4484 2297267 2298565 + IAA-amino acid hydrolase 1 PMID: 7792599 PMID: 7674922 best DB hits: BLAST: swissprot:P54984%3B Y100_SYNY3 HYPOTHETICAL 42.7 KD PROTEIN SLL0100%3B E%3D2e-59 gb:AAF26972.1%3B AC018363_17 (AC018363) IAA-amino acid hydrolase%3B E%3D1e-51 swissprot:P54968%3B ILR1_ARATH IAA-AMINO ACID HYDROLASE 1 -----%3B E%3D2e-51 COG: sll0100%3B COG1473 Metal-dependent amidohydrolases/aminoacylases%3B E%3D2e-60 PFAM: PF01546%3B Peptidase M20/M25/M40%3B E%3D4.9e-32 gene gene2492 http://www.ncbi.nlm.nih.gov/gene/?term=RB4484 RB4485 RB4485 RB4485 2298652 2299770 + carboxylate-amine ligase ATP-dependent carboxylate-amine ligase gene gene2493 http://www.ncbi.nlm.nih.gov/gene/?term=RB4485 RB4487 RB4487 ntrC ntrC 2299859 2301403 + nitrogen assimilation regulatory protein PMID: 7553451 best DB hits: BLAST: swissprot:Q06065%3B ATOC_ECOLI ACETOACETATE METABOLISM REGULATORY%3B E%3D1e-86 swissprot:P45671%3B NTRC_AZOBR NITROGEN ASSIMILATION REGULATORY%3B E%3D4e-84 pir:S42745%3B nitrogen assimilation regulatory protein ntrC -%3B E%3D5e-84 COG: atoC%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D1e-87 PFAM: PF00072%3B Response regulator receiver dom%3B E%3D2e-29 PF00004%3B ATPase associated with v%3B E%3D0.34 PF00158%3B Sigma-54 interaction domain%3B E%3D5.2e-129 gene gene2494 http://www.ncbi.nlm.nih.gov/gene/?term=RB4487 RB4489 RB4489 RB4489 2301387 2301905 + hypothetical protein gene gene2495 http://www.ncbi.nlm.nih.gov/gene/?term=RB4489 RB449 RB449 RB449 237584 238009 - hypothetical protein gene gene258 http://www.ncbi.nlm.nih.gov/gene/?term=RB449 RB4492 RB4492 RB4492 2301833 2302138 - hypothetical protein gene gene2496 http://www.ncbi.nlm.nih.gov/gene/?term=RB4492 RB4493 RB4493 RB4493 2302123 2302374 - hypothetical protein gene gene2497 http://www.ncbi.nlm.nih.gov/gene/?term=RB4493 RB4497 RB4497 RB4497 2302950 2303099 + hypothetical protein gene gene2498 http://www.ncbi.nlm.nih.gov/gene/?term=RB4497 RB4498 RB4498 RB4498 2303250 2303522 - hypothetical protein gene gene2499 http://www.ncbi.nlm.nih.gov/gene/?term=RB4498 RB4499 RB4499 RB4499 2303519 2303764 - hypothetical protein gene gene2500 http://www.ncbi.nlm.nih.gov/gene/?term=RB4499 RB45 RB45 RB45 21151 21471 - hypothetical protein gene gene27 http://www.ncbi.nlm.nih.gov/gene/?term=RB45 RB450 RB450 RB450 237946 238155 - hypothetical protein gene gene259 http://www.ncbi.nlm.nih.gov/gene/?term=RB450 RB4500 RB4500 RB4500 2303645 2303908 + hypothetical protein best DB hits: BLAST: swissprot:AHNK_HUMAN_2%3B [Segment 2 of 2] NEUROBLAST DIFFERENTIATION%3B E%3D0.006 pir:A45259%3B desmoyokin - human (fragments)%3B E%3D0.018 gene gene2501 http://www.ncbi.nlm.nih.gov/gene/?term=RB4500 RB4502 RB4502 RB4502 2303992 2304171 + hypothetical protein best DB hits: BLAST: pir:T26079%3B hypothetical protein W02A2.5 - Caenorhabditis elegans%3B E%3D0.21 PFAM: PF01679%3B Uncharacterized protein family UPF00%3B E%3D2.1e-11 gene gene2502 http://www.ncbi.nlm.nih.gov/gene/?term=RB4502 RB4504 RB4504 RB4504 2304293 2304838 + hypothetical protein best DB hits: BLAST: ddbj:BAB06016.1%3B (AP001515) BH2297~~unknown conserved protein%3B E%3D3e-13 ddbj:BAB05689.1%3B (AP001513) BH1970~~unknown conserved protein%3B E%3D2e-10 pir:A69782%3B probable membrane protein ydfS - Bacillus subtilis%3B E%3D6e-08 COG: BH2297%3B COG2323 Predicted membrane protein%3B E%3D3e-14 gene gene2503 http://www.ncbi.nlm.nih.gov/gene/?term=RB4504 RB4505 RB4505 RB4505 2304919 2306070 + hypothetical protein PMID: 11248100 best DB hits: BLAST: gb:AAK03159.1%3B (AE006148) unknown [Pasteurella multocida]%3B E%3D3e-53 embl:CAC10327.1%3B (AL442629) integral membrane protein%3B E%3D0.020 PFAM: PF01260%3B AP endonuclease 1%3B E%3D0.4 gene gene2504 http://www.ncbi.nlm.nih.gov/gene/?term=RB4505 RB4506 RB4506 RB4506 2306074 2306865 + phosphatidylcholine synthase PMID: 20317087 best DB hits: BLAST: pir:D83165%3B conserved hypothetical protein PA3857 [imported] -%3B E%3D6e-19 pir:A70131%3B phosphatidyltransferase homolog - Lyme disease%3B E%3D2e-12 gb:AAF27310.1%3B AF155772_4 (AF155772) phosphatidylcholine synthase%3B E%3D4e-11 COG: BB0249%3B COG1183 Phosphatidylserine synthase%3B E%3D2e-13 gene gene2505 http://www.ncbi.nlm.nih.gov/gene/?term=RB4506 RB4508 RB4508 cheY cheY 2306813 2307469 + chemotaxis response regulator cheYI PMID: 99453779 best DB hits: BLAST: pir:S76044%3B hypothetical protein slr0322 - Synechocystis sp. (strain%3B E%3D6e-10 pir:F70801%3B hypothetical protein Rv3765c - Mycobacterium%3B E%3D3e-09 embl:CAB54568.1%3B (AJ006392) response regulator [Streptococcus%3B E%3D4e-09 COG: slr0322_2%3B COG0784 CheY-like receiver domains%3B E%3D6e-11 Rv3765c%3B COG0745 Response regulators consisting of a CheY-like%3B E%3D3e-10 DRA0355_2%3B COG0784 CheY-like receiver domains%3B E%3D2e-09 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D1.1e-14 gene gene2506 http://www.ncbi.nlm.nih.gov/gene/?term=RB4508 RB451 RB451 RB451 238187 238390 + site-specific DNA-methyltransferase (cytosine-specific)- transcriptional regulator PMID: 7607524 best DB hits: BLAST: swissprot:P50196%3B MTE8_ECOLI MODIFICATION METHYLASE ECO47II%3B E%3D4e-04 swissprot:P45876%3B DCMR_METSP TRANSCRIPTIONAL REPRESSOR DCMR%3B E%3D0.002 pir:T36638%3B probable substrate binding protein - Streptomyces%3B E%3D0.031 gene gene260 http://www.ncbi.nlm.nih.gov/gene/?term=RB451 RB4510 RB4510 RB4510 2307508 2307657 - hypothetical protein gene gene2507 http://www.ncbi.nlm.nih.gov/gene/?term=RB4510 RB4511 RB4511 RB4511 2307911 2312824 + sensory transduction histidine kinase PMID: 8905231 best DB hits: BLAST: swissprot:Q02998%3B YH19_RHOCA HYPOTHETICAL 104.1 KD PROTEIN IN HYPE%3B E%3D1e-120 gb:AAA98755.1%3B (L29642) methyltransferase [Pseudomonas%3B E%3D5e-58 pir:E82198%3B sensor histidine kinaseresponse regulator VC1445%3B E%3D3e-49 COG: VC1349_2%3B COG0642 Sensory transduction histidine kinases%3B E%3D4e-38 BH1655%3B COG1352 Methylase of chemotaxis methyl-accepting proteins%3B E%3D6e-31 arcB_1%3B COG0642 Sensory transduction histidine kinases%3B E%3D4e-30 PFAM: PF01339%3B CheB methylesterase%3B E%3D3.9e-06 PF01303%3B Egg lysin (Sperm-lysin)%3B E%3D0.017 PF01339%3B CheB methylesterase%3B E%3D0.076 gene gene2508 http://www.ncbi.nlm.nih.gov/gene/?term=RB4511 RB4512 RB4512 RB4512 2312848 2314071 + hypothetical protein best DB hits: BLAST: pir:G75425%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D5e-44 embl:CAA59823.1%3B (X85811) ORF N2219 [Saccharomyces cerevisiae]%3B E%3D4e-11 embl:CAA95970.1%3B (Z71370) ORF YNL094w [Saccharomyces cerevisiae]%3B E%3D4e-11 gene gene2509 http://www.ncbi.nlm.nih.gov/gene/?term=RB4512 RB4513 RB4513 RB4513 2314118 2315098 - serum resistance protein brkB PMID: 95012680 best DB hits: BLAST: pir:G75252%3B probable brkB protein - Deinococcus radiodurans (strain%3B E%3D3e-19 pir:I40328%3B serum-resistance protein brkB [imported] - Bordetella%3B E%3D2e-12 pir:A82807%3B BrkB protein XF0432 [imported] - Xylella fastidiosa%3B E%3D2e-09 COG: DR2609%3B COG1295 tRNA-processing ribonuclease BN%3B E%3D2e-20 gene gene2510 http://www.ncbi.nlm.nih.gov/gene/?term=RB4513 RB4514 RB4514 RB4514 2315151 2315867 - RNA polymerase ECF-type sigma factor PMID: 94329558 PMID: 89024591 best DB hits: BLAST: ddbj:BAB03982.1%3B (AP001507) RNA polymerase ECF-type sigma factor%3B E%3D2e-07 embl:CAA09264.1%3B (AJ010601) ECF sigma factor [Streptomyces%3B E%3D2e-04 swissprot:Q45585%3B SIGW_BACSU RNA POLYMERASE SIGMA FACTOR SIGW%3B E%3D3e-04 COG: BH0263%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D2e-08 PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D3.9e-10 gene gene2511 http://www.ncbi.nlm.nih.gov/gene/?term=RB4514 RB4517 RB4517 RB4517 2315930 2316283 + pterin-4-alpha-carbinolamine dehydratase PMID: 8108417 PMID: 97052967 best DB hits: BLAST: pir:C70304%3B 4a-hydroxytetrahydrobiopterin dehydratase (EC 4.2.1.96)%3B E%3D2e-10 ddbj:BAA97373.1%3B (AB023044) gene_id:MWD22.5~~similar to unknown%3B E%3D5e-10 swissprot:P43335%3B PHS_PSEAE PTERIN-4-ALPHA-CARBINOLAMINE%3B E%3D4e-09 COG: aq_049%3B COG2154 Pterin-4a-carbinolamine dehydratase%3B E%3D2e-11 PFAM: PF01329%3B Pterin 4 alpha carbinolamine dehydr%3B E%3D1.2e-18 gene gene2512 http://www.ncbi.nlm.nih.gov/gene/?term=RB4517 RB4519 RB4519 RB4519 2316280 2316618 + hypothetical protein gene gene2513 http://www.ncbi.nlm.nih.gov/gene/?term=RB4519 RB452 RB452 RB452 238451 241546 + hypothetical protein PMID: 9679194 best DB hits: BLAST: pir:F71079%3B hypothetical protein PH0902 - Pyrococcus horikoshii%3B E%3D8e-08 pir:G75134%3B hypothetical protein PAB0589 - Pyrococcus abyssi (strain%3B E%3D3e-07 pir:G72734%3B hypothetical protein APE0415 - Aeropyrum pernix (strain%3B E%3D0.10 COG: PH0902%3B COG1483 Predicted ATPase of the AAA+ class%3B E%3D7e-09 gene gene261 http://www.ncbi.nlm.nih.gov/gene/?term=RB452 RB4522 RB4522 RB4522 2316763 2318100 + hypothetical protein gene gene2514 http://www.ncbi.nlm.nih.gov/gene/?term=RB4522 RB4526 RB4526 RB4526 2318176 2318385 + hypothetical protein gene gene2515 http://www.ncbi.nlm.nih.gov/gene/?term=RB4526 RB4527 RB4527 RB4527 2318321 2319655 + 3-oxoacyl-ACP synthase PMID: 7972002 PMID: 7768872 best DB hits: BLAST: ddbj:BAB06601.1%3B (AP001517) 3-oxoacyl-(acyl-carrier protein)%3B E%3D9e-37 pir:S77464%3B 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41)%3B E%3D1e-34 pir:G69842%3B 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41)%3B E%3D1e-34 COG: BH2882%3B COG0304 3-oxoacyl-(acyl-carrier-protein) synthase I%3B E%3D8e-38 PFAM: PF00109%3B Beta-ketoacyl synthase%2C N-ter%3B E%3D3.2e-10 gene gene2516 http://www.ncbi.nlm.nih.gov/gene/?term=RB4527 RB4528 RB4528 RB4528 2319639 2319857 - hypothetical protein gene gene2517 http://www.ncbi.nlm.nih.gov/gene/?term=RB4528 RB4529 RB4529 RB4529 2319854 2320399 - signal peptide gene gene2518 http://www.ncbi.nlm.nih.gov/gene/?term=RB4529 RB453 RB453 RB453 241543 242112 + hypothetical protein gene gene262 http://www.ncbi.nlm.nih.gov/gene/?term=RB453 RB4530 RB4530 czcA czcA 2320475 2323867 - cation efflux system protein czcA-1 PMID: 8829543 PMID: 2678100 best DB hits: BLAST: gb:AAG54908.1%3B AE005237_4 (AE005237) inner membrane%3B E%3D1e-109 swissprot:P38054%3B YBDE_ECOLI HYPOTHETICAL 114.7 KDA PROTEIN IN%3B E%3D1e-109 gb:AAD11749.1%3B (AF067954) inner membrane protoncation%3B E%3D1e-109 COG: ybdE%3B COG0841 Cation/multidrug efflux pump%3B E%3D1e-110 PFAM: PF00873%3B AcrB/AcrD/AcrF family%3B E%3D5.1e-154 gene gene2519 http://www.ncbi.nlm.nih.gov/gene/?term=RB4530 RB4532 RB4532 RB4532 2323927 2325441 - MchE protein PMID: 12065505 best DB hits: BLAST: embl:CAC21493.1%3B (AJ278866) MchE protein [Escherichia coli]%3B E%3D0.37 swissprot:P22519%3B CVAA_ECOLI COLICIN V SECRETION PROTEIN CVAA%3B E%3D0.38 pir:E82263%3B conserved hypothetical protein VC0913 [imported] -%3B E%3D0.76 PFAM: PF02221%3B E1 family%3B E%3D0.88 PF00364%3B Biotin-requiring enzyme%3B E%3D0.0054 gene gene2520 http://www.ncbi.nlm.nih.gov/gene/?term=RB4532 RB4536 RB4536 RB4536 2325446 2325652 + hypothetical protein gene gene2521 http://www.ncbi.nlm.nih.gov/gene/?term=RB4536 RB4538 RB4538 RB4538 2325701 2326219 - signal peptide gene gene2522 http://www.ncbi.nlm.nih.gov/gene/?term=RB4538 RB454 RB454 RB454 242109 245120 + DNA methylase containing a Zn-ribbon PMID: 9389475 best DB hits: BLAST: ref:NP_071283.1%3B Predicted DNA methylase containing a Zn-ribbon%3B E%3D9e-14 pir:H72310%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D4e-09 pir:A71080%3B hypothetical protein PH0905 - Pyrococcus horikoshii%3B E%3D8e-07 COG: AF2345+6+7%3B COG1743 Predicted DNA methylase containing a Zn-ribbon%3B E%3D8e-15 gene gene263 http://www.ncbi.nlm.nih.gov/gene/?term=RB454 RB4540 RB4540 czcC czcC 2326366 2327802 - divalent cation resistant determinant protein C PMID: 8829543 best DB hits: BLAST: gb:AAG09627.1%3B (AY007258) CztC [Pseudomonas fluorescens]%3B E%3D3e-15 pir:JC4698%3B divalent cation resistant determinant protein C -%3B E%3D4e-15 swissprot:P13509%3B CZCC_ALCEU COBALT-ZINC-CADMIUM RESISTANCE%3B E%3D3e-14 COG: PA2522%3B COG1538 Outer membrane protein%3B E%3D8e-13 PFAM: PF02321%3B Outer membrane efflux protein%3B E%3D2.9e-11 gene gene2523 http://www.ncbi.nlm.nih.gov/gene/?term=RB4540 RB4542 RB4542 RB4542 2328049 2328231 - hypothetical protein best DB hits: PFAM: PF00048%3B Small cytokines (intecrine/chemokine%3B E%3D0.2 gene gene2524 http://www.ncbi.nlm.nih.gov/gene/?term=RB4542 RB4544 RB4544 RB4544 2328228 2328704 - signal peptide gene gene2525 http://www.ncbi.nlm.nih.gov/gene/?term=RB4544 RB4547 RB4547 RB4547 2328848 2330116 - ankyrin protein PMID: 8390993 best DB hits: BLAST: pir:T03939%3B potassium channel protein - maize ----- embl:%3B E%3D0.27 pir:T45609%3B hypothetical protein F13G24.40 - Arabidopsis thaliana%3B E%3D0.47 ddbj:BAB09948.1%3B (AB005249) gene_id:MXM12.8~~unknown protein%3B E%3D0.47 PFAM: PF00023%3B Ank repeat%3B E%3D2.5e-08 gene gene2526 http://www.ncbi.nlm.nih.gov/gene/?term=RB4547 RB4550 RB4550 RB4550 2330227 2330508 + hypothetical protein gene gene2527 http://www.ncbi.nlm.nih.gov/gene/?term=RB4550 RB4551 RB4551 RB4551 2330298 2330537 - hypothetical protein gene gene2528 http://www.ncbi.nlm.nih.gov/gene/?term=RB4551 RB4552 RB4552 RB4552 2330568 2330717 + hypothetical protein gene gene2529 http://www.ncbi.nlm.nih.gov/gene/?term=RB4552 RB4553 RB4553 RB4553 2330683 2330889 + hypothetical protein gene gene2530 http://www.ncbi.nlm.nih.gov/gene/?term=RB4553 RB4554 RB4554 RB4554 2330930 2331106 + hypothetical protein gene gene2531 http://www.ncbi.nlm.nih.gov/gene/?term=RB4554 RB4555 RB4555 RB4555 2331156 2331341 - hypothetical protein gene gene2532 http://www.ncbi.nlm.nih.gov/gene/?term=RB4555 RB4556 RB4556 RB4556 2331428 2332459 + signal peptide best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene2533 http://www.ncbi.nlm.nih.gov/gene/?term=RB4556 RB4557 RB4557 RB4557 2332551 2333021 + signal peptide gene gene2534 http://www.ncbi.nlm.nih.gov/gene/?term=RB4557 RB4558 RB4558 RB4558 2332976 2333224 - hypothetical protein gene gene2535 http://www.ncbi.nlm.nih.gov/gene/?term=RB4558 RB4561 RB4561 RB4561 2333282 2335552 + beta-hexosaminidase PMID: 8969205 PMID: 10220172 best DB hits: BLAST: pir:B82755%3B beta-hexosaminidase precursor XF0847 [imported] -%3B E%3D2e-35 swissprot:P96155%3B HEX1_VIBFU BETA-HEXOSAMINIDASE%3B E%3D4e-26 pir:A82301%3B beta-N-acetylhexosaminidase VC0613 [imported] - Vibrio%3B E%3D2e-25 PFAM: PF02838%3B Glycosyl hydrolase 20%2C%3B E%3D0.00019 PF00728%3B Glycosyl hydrolase 20%2C%3B E%3D5.3e-07 gene gene2536 http://www.ncbi.nlm.nih.gov/gene/?term=RB4561 RB4564 RB4564 sglT sglT 2335625 2337433 + sodium/glucose cotransporter PMID: 8652595 PMID: 10835424 best DB hits: BLAST: swissprot:P96169%3B SGLT_VIBPA SODIUMGLUCOSE COTRANSPORTER%3B E%3D5e-24 ddbj:BAA11215.1%3B (D78137) Na+glucose symporter [Vibrio%3B E%3D6e-22 ddbj:BAA22950.1%3B (AB008225) Na+-glucose cotransporter type 1%3B E%3D4e-16 COG: sll1087%3B COG0591 Na+/proline%2C Na+/panthothenate symporters and%3B E%3D3e-13 yidK%3B COG0591 Na+/proline%2C Na+/panthothenate symporters and related%3B E%3D1e-06 MTH1856%3B COG0591 Na+/proline%2C Na+/panthothenate symporters and%3B E%3D1e-06 PFAM: PF00474%3B Sodium:solute symporter family%3B E%3D0.0075 gene gene2537 http://www.ncbi.nlm.nih.gov/gene/?term=RB4564 RB4567 RB4567 chd1 chd1 2337476 2338300 - cryptic haloacid dehalogenase 1 PMID: 99429847 best DB hits: BLAST: embl:CAA06738.1%3B (AJ005843) cryptic haloacid dehalogenase 1%3B E%3D2e-31 embl:CAB61854.1%3B (AL133252) dehalogenase [Streptomyces%3B E%3D3e-24 pdb:1ZRN%3B Intermediate Structure Of L-2-Haloacid Dehalogenase%3B E%3D7e-20 COG: BH3587%3B COG0546 Predicted phosphatases%3B E%3D2e-09 PA0810%3B COG1011 Predicted hydrolases of the HAD superfamily%3B E%3D7e-07 DR2613%3B COG0637 Predicted phosphatase/phosphohexomutase%3B E%3D6e-06 PFAM: PF00702%3B haloacid dehalogenase-like hydrolas%3B E%3D8.2e-21 gene gene2538 http://www.ncbi.nlm.nih.gov/gene/?term=RB4567 RB457 RB457 RB457 245228 246406 + hypothetical protein PMID: 8688087 best DB hits: BLAST: gb:AAC37104.1%3B (L77118) M. jannaschii predicted coding region%3B E%3D4e-04 gb:AAG45955.1%3B AF282921_1 (AF282921) RecF protein%3B E%3D0.005 embl:CAA71688.1%3B (Y10687) purine NTPase [Sulfolobus%3B E%3D0.047 COG: jhp0346%3B COG1106 Predicted ATPases%3B E%3D0.005 PFAM: PF02463%3B SMC domain N terminal domain%3B E%3D5.1e-06 gene gene264 http://www.ncbi.nlm.nih.gov/gene/?term=RB457 RB4571 RB4571 RB4571 2338439 2339095 - hypothetical protein best DB hits: BLAST: gb:AAD54003.1%3B AF088856_2 (AF088856) hypothetical protein%3B E%3D4e-20 embl:CAB69777.1%3B (AL137187) tetR-family transcriptional%3B E%3D6e-16 embl:CAB93063.1%3B (AL357432) transcriptional regulator%3B E%3D2e-14 COG: VCA0586%3B COG1309 Transcriptional regulator%3B E%3D1e-11 PFAM: PF00440%3B Bacterial regulatory proteins%2C tetR%3B E%3D5.4e-11 gene gene2539 http://www.ncbi.nlm.nih.gov/gene/?term=RB4571 RB4572 RB4572 RB4572 2339103 2339375 - hypothetical protein gene gene2540 http://www.ncbi.nlm.nih.gov/gene/?term=RB4572 RB4575 RB4575 RB4575 2339600 2340643 + signal peptide gene gene2541 http://www.ncbi.nlm.nih.gov/gene/?term=RB4575 RB4576 RB4576 RB4576 2340650 2342152 - signal peptide best DB hits: BLAST: pir:T01022%3B hypothetical protein YUP8H12R.5 - Arabidopsis thaliana%3B E%3D0.028 pir:T01023%3B hypothetical protein YUP8H12R.6 - Arabidopsis thaliana%3B E%3D0.032 pir:T01021%3B hypothetical protein YUP8H12R.4 - Arabidopsis thaliana%3B E%3D0.036 gene gene2542 http://www.ncbi.nlm.nih.gov/gene/?term=RB4576 RB4577 RB4577 asnB asnB 2342223 2344127 - asparagine synthetase [glutamine-hydrolyzing] 1 PMID: 10498721 PMID: 8755891 best DB hits: BLAST: gb:AAF34252.1%3B AF168003_7 (AF168003) asparagine%3B E%3D1e-100 gb:AAF24002.1%3B (AF035937) WbpS [Pseudomonas aeruginosa]%3B E%3D9e-94 ddbj:BAA33606.1%3B (AB012956) probable asparagine synthetase%3B E%3D1e-89 COG: BS_asnB%3B COG0367 Asparagine synthase (glutamine-hydrolyzing)%3B E%3D2e-86 PFAM: PF00310%3B Glutamine amidotransferases clas%3B E%3D5.6e-21 PF00733%3B Asparagine synthase%3B E%3D1.5e-51 gene gene2543 http://www.ncbi.nlm.nih.gov/gene/?term=RB4577 RB4578 RB4578 RB4578 2344200 2345492 - hemolysin protein PMID: 7968456 best DB hits: BLAST: gb:AAG20419.1%3B (AE005114) hemolysin protein%3B Hlp [Halobacterium%3B E%3D3e-25 pir:F72326%3B hemolysin-related protein - Thermotoga maritima (strain%3B E%3D9e-25 pir:H71299%3B probable hemolysin (tlyC) - syphilis spirochete -----%3B E%3D6e-23 COG: VNG2308G%3B COG1253 Uncharacterized CBS domain-containing proteins%3B E%3D3e-26 PFAM: PF00571%3B CBS domain%3B E%3D7e-06 gene gene2544 http://www.ncbi.nlm.nih.gov/gene/?term=RB4578 RB4579 RB4579 RB4579 2345489 2346073 - hypothetical protein PMID: 8905232 best DB hits: BLAST: swissprot:P77385%3B YBEY_ECOLI HYPOTHETICAL 17.5 KDA PROTEIN IN%3B E%3D4e-06 embl:CAB62265.1%3B (AJ249116) YbeY protein [Salmonella typhimurium]%3B E%3D4e-06 gb:AAG54992.1%3B AE005245_1 (AE005245) orf%2C hypothetical protein%3B E%3D5e-06 COG: ybeY%3B COG0319 Predicted metal-dependent hydrolase%3B E%3D4e-07 PFAM: PF02130%3B Uncharacterized protein family UPF00%3B E%3D6.9e-14 gene gene2545 http://www.ncbi.nlm.nih.gov/gene/?term=RB4579 RB4580 RB4580 RB4580 2346070 2348454 - hypothetical protein PMID: 8969508 best DB hits: BLAST: swissprot:P46344%3B YQFF_BACSU HYPOTHETICAL 79.2 KD PROTEIN IN%3B E%3D1e-58 ddbj:BAB05081.1%3B (AP001511) BH1362~~unknown conserved protein%3B E%3D4e-54 pir:E72244%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D1e-48 COG: BS_yqfF%3B COG1480 Predicted membrane-associated HD superfamily%3B E%3D1e-59 PFAM: PF01966%3B HD domain%3B E%3D5.3e-21 gene gene2546 http://www.ncbi.nlm.nih.gov/gene/?term=RB4580 RB4582 RB4582 RB4582 2348451 2349599 - phoH-like protein PMID: 8444794 best DB hits: BLAST: swissprot:P46343%3B PHOL_BACSU PHOH-LIKE PROTEIN ----- pir:%3B E%3D1e-70 ddbj:BAB05080.1%3B (AP001511) phosphate starvation-induced protein%3B E%3D4e-69 embl:CAA12155.1%3B (AJ224829) ORF4 [Bacillus megaterium]%3B E%3D8e-69 COG: BS_phoH%3B COG1702 Phosphate starvation-inducible protein PhoH%2C%3B E%3D1e-71 ybeZ%3B COG1702 Phosphate starvation-inducible protein PhoH%2C predicted%3B E%3D4e-68 Rv2368c%3B COG1702 Phosphate starvation-inducible protein PhoH%2C%3B E%3D2e-65 PFAM: PF02562%3B PhoH-like protein%3B E%3D1.8e-133 gene gene2547 http://www.ncbi.nlm.nih.gov/gene/?term=RB4582 RB4583 RB4583 cdS cdS 2349706 2350752 - phosphatidate cytidylyltransferase PMID: 2995358 PMID: 8557688 PMID: 9083091 best DB hits: BLAST: gb:AAB61972.1%3B (U60832) CDP-diglyceride synthetase [Haemophilus%3B E%3D2e-19 swissprot:P44937%3B CDSA_HAEIN PHOSPHATIDATE CYTIDYLYLTRANSFERASE%3B E%3D3e-19 gb:AAB61967.1%3B (U60831) CDP diglyceride synthetase [Haemophilus%3B E%3D3e-19 COG: HI0919%3B COG0575 CDP-diglyceride synthetase%3B E%3D2e-20 PFAM: PF01148%3B Phosphatidate cytidylyltransfe%3B E%3D5.6e-15 gene gene2548 http://www.ncbi.nlm.nih.gov/gene/?term=RB4583 RB4586 RB4586 TPX TPX 2350844 2351362 - 2-Cys peroxiredoxin PMID: 7499381 best DB hits: BLAST: swissprot:P80864%3B TPX_BACSU PROBABLE THIOL PEROXIDASE%3B E%3D2e-39 swissprot:P31307%3B TPX_STRPA PROBABLE THIOL PEROXIDASE -----%3B E%3D4e-33 swissprot:P42366%3B TPX_STRGC PROBABLE THIOL PEROXIDASE -----%3B E%3D5e-33 COG: BS_ytgI%3B COG2077 Thiol peroxidase%3B E%3D1e-40 APE2125%3B COG1225 Peroxiredoxins%3B E%3D1e-08 DR2242%3B COG0450 Thiol - alkyl hydroperoxide reductases%3B E%3D1e-05 PFAM: PF00578%3B AhpC/TSA family%3B E%3D9.5e-20 gene gene2549 http://www.ncbi.nlm.nih.gov/gene/?term=RB4586 RB4589 RB4589 RB4589 2351461 2351649 - hypothetical protein gene gene2550 http://www.ncbi.nlm.nih.gov/gene/?term=RB4589 RB459 RB459 RB459 246403 247077 + hypothetical protein gene gene265 http://www.ncbi.nlm.nih.gov/gene/?term=RB459 RB4590 RB4590 RB4590 2351800 2352024 - hypothetical protein gene gene2551 http://www.ncbi.nlm.nih.gov/gene/?term=RB4590 RB4591 RB4591 recO recO 2352125 2352955 + DNA repair protein recO PMID: 2544549 best DB hits: BLAST: pir:S72590%3B hypothetical protein B1937_F1_25 - Mycobacterium leprae%3B E%3D9e-10 pir:A70586%3B hypothetical protein Rv2362c - Mycobacterium%3B E%3D2e-09 ddbj:BAB05088.1%3B (AP001511) BH1369~~unknown conserved protein%3B E%3D3e-08 COG: Rv2362c%3B COG1381 Recombinational DNA repair protein%3B E%3D2e-10 PFAM: PF02565%3B Recombination protein O%3B E%3D3.8e-20 gene gene2552 http://www.ncbi.nlm.nih.gov/gene/?term=RB4591 RB4593 RB4593 RB4593 2353015 2354229 + signal peptide gene gene2553 http://www.ncbi.nlm.nih.gov/gene/?term=RB4593 RB4595 RB4595 RB4595 2354226 2354777 + signal peptide gene gene2554 http://www.ncbi.nlm.nih.gov/gene/?term=RB4595 RB4597 RB4597 RB4597 2354790 2355821 - malate permease PMID: 8953720 best DB hits: BLAST: embl:CAA57770.2%3B (X82326) malate permease [Oenococcus oeni]%3B E%3D0.16 pir:H72378%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D0.19 gene gene2555 http://www.ncbi.nlm.nih.gov/gene/?term=RB4597 RB4598 RB4598 RB4598 2355806 2356726 + hypothetical protein gene gene2556 http://www.ncbi.nlm.nih.gov/gene/?term=RB4598 RB46 RB46 RB46 21455 22282 - hypothetical protein gene gene28 http://www.ncbi.nlm.nih.gov/gene/?term=RB46 RB460 RB460 RB460 247083 249788 + DEAH ATP-dependent helicase PMID: 155284 best DB hits: BLAST: pir:T17395%3B probable DEAH ATP-dependent helicase - Dichelobacter%3B E%3D2e-14 gb:AAG20812.1%3B (AE005149) ATP-dependent RNA helicase%3B HepA%3B E%3D2e-14 pir:D71079%3B hypothetical protein PH0900 - Pyrococcus horikoshii%3B E%3D1e-11 COG: PH0900%3B COG0553 Superfamily II DNA/RNA helicases%2C SNF2 family%3B E%3D1e-12 MJ0669%3B COG0513 Superfamily II DNA and RNA helicases%3B E%3D8e-08 AF2350%3B COG0553 Superfamily II DNA/RNA helicases%2C SNF2 family%3B E%3D4e-07 PFAM: PF00176%3B SNF2 and others N-terminal domain%3B E%3D7.6e-06 PF00271%3B Helicase conserved C-terminal doma%3B E%3D1.1e-12 gene gene266 http://www.ncbi.nlm.nih.gov/gene/?term=RB460 RB4601 RB4601 RB4601 2356778 2357734 + hypothetical protein gene gene2557 http://www.ncbi.nlm.nih.gov/gene/?term=RB4601 RB4603 RB4603 RB4603 2357793 2358854 - hypothetical protein gene gene2558 http://www.ncbi.nlm.nih.gov/gene/?term=RB4603 RB4605 RB4605 dapA dapA 2358964 2359947 - dihydrodipicolinate synthase PMID: 8098035 PMID: 7853400 PMID: 8081752 best DB hits: BLAST: swissprot:Q07607%3B MOSA_RHIME MOSA PROTEIN ----- pir: B53308%3B E%3D2e-29 embl:CAC24079.1%3B (AL512981) ORF-c25_010 [Sulfolobus solfataricus]%3B E%3D7e-29 pir:S56523%3B dihydrodipicolinate synthase homolog yjhH - Escherichia%3B E%3D1e-28 COG: yjhH%3B COG0329 Dihydrodipicolinate synthetase/N-acetylneuraminate%3B E%3D1e-29 PFAM: PF00701%3B Dihydrodipicolinate synthetase famil%3B E%3D2.2e-57 gene gene2559 http://www.ncbi.nlm.nih.gov/gene/?term=RB4605 RB4606 RB4606 RB4606 2359956 2360591 - protein disulfide-isomerase PMID: 9371463 best DB hits: BLAST: pir:D69100%3B probable protein disulfide-isomerase (EC 5.3.4.1)%3B E%3D5e-08 gb:AAG20098.1%3B (AE005089) Vng1905c [Halobacterium sp. NRC-1]%3B E%3D1e-04 pir:B70456%3B thioredoxin - Aquifex aeolicus ----- gb:%3B E%3D6e-04 COG: MTH1745%3B COG0526 Thiol-disulfide isomerase and thioredoxins%3B E%3D5e-09 VNG1905C%3B COG1331 Highly conserved protein containing a thioredoxin%3B E%3D1e-05 aq_1811%3B COG0526 Thiol-disulfide isomerase and thioredoxins%3B E%3D6e-05 gene gene2560 http://www.ncbi.nlm.nih.gov/gene/?term=RB4606 RB4607 RB4607 RB4607 2360670 2360798 - hypothetical protein gene gene2561 http://www.ncbi.nlm.nih.gov/gene/?term=RB4607 RB4608 RB4608 RB4608 2360777 2360980 - hypothetical protein gene gene2562 http://www.ncbi.nlm.nih.gov/gene/?term=RB4608 RB4609 RB4609 RB4609 2360819 2360977 + hypothetical protein gene gene2563 http://www.ncbi.nlm.nih.gov/gene/?term=RB4609 RB461 RB461 RB461 249801 250751 + hypothetical protein PMID: 11016950 best DB hits: BLAST: gb:AAG20152.1%3B (AE005093) Vng1977h [Halobacterium sp. NRC-1]%3B E%3D0.002 gene gene267 http://www.ncbi.nlm.nih.gov/gene/?term=RB461 RB4610 RB4610 ruvA ruvA 2360999 2361622 - holliday junction DNA helicase ruvA PMID: 21128732 best DB hits: BLAST: pir:H81795%3B Holliday junction DNA helicase NMA2221 [imported] -%3B E%3D6e-11 pir:B81218%3B Holliday junction DNA helicase RuvA NMB0265 [imported] -%3B E%3D1e-10 pir:D81662%3B Holliday junction DNA helicase RuvA TC0788 [imported] -%3B E%3D8e-09 COG: NMB0265%3B COG0632 Holliday junction resolvasome DNA-binding subunit%3B E%3D1e-11 PFAM: PF02505%3B Methyl-coenzyme M reductase op%3B E%3D0.16 PF01330%3B RuvA N terminal domain%3B E%3D4.3e-05 PF02904%3B RuvA central domain II%3B E%3D1.1e-06 gene gene2564 http://www.ncbi.nlm.nih.gov/gene/?term=RB4610 RB4611 RB4611 nusB nusB 2361619 2362056 - transcription antitermination protein NusB Regulates rRNA biosynthesis by transcriptional antitermination gene gene2565 http://www.ncbi.nlm.nih.gov/gene/?term=RB4611 RB4613 RB4613 RB4613 2362178 2362510 - hesB family protein best DB hits: BLAST: swissprot:O32113%3B YUTM_BACSU HYPOTHETICAL 12.8 KDA PROTEIN IN%3B E%3D5e-19 gb:AAD39571.1%3B AC007067_11 (AC007067) T10O24.11 [Arabidopsis%3B E%3D7e-18 swissprot:O67709%3B YI57_AQUAE HYPOTHETICAL PROTEIN AQ_1857 -----%3B E%3D1e-17 COG: BS_yutM%3B COG0316 Uncharacterized ACR%3B E%3D5e-20 PFAM: PF01521%3B HesB-like domain%3B E%3D8.4e-43 gene gene2566 http://www.ncbi.nlm.nih.gov/gene/?term=RB4613 RB4614 RB4614 RB4614 2362491 2362625 - hypothetical protein gene gene2567 http://www.ncbi.nlm.nih.gov/gene/?term=RB4614 RB4616 RB4616 RB4616 2362647 2362991 + hypothetical protein gene gene2568 http://www.ncbi.nlm.nih.gov/gene/?term=RB4616 RB4619 RB4619 RB4619 2363086 2364531 + NADH-dependent dehydrogenase best DB hits: BLAST: embl:CAB82869.1%3B (AJ276673) hypothetical protein [Streptomyces%3B E%3D8e-08 ddbj:BAB04967.1%3B (AP001511) NADH-dependent dyhydrogenase%3B E%3D1e-07 gb:AAC23913.1%3B (AF039207) NADH-dependent dehydrogenase homolog%3B E%3D5e-07 COG: BH1248%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D1e-08 PFAM: PF01408%3B Oxidoreductase%2C NAD-bin%3B E%3D9.6e-18 PF02894%3B Oxidoreductase%2C C-termi%3B E%3D0.086 gene gene2569 http://www.ncbi.nlm.nih.gov/gene/?term=RB4619 RB4621 RB4621 RB4621 2364675 2369168 - signal peptide best DB hits: PFAM: PF00034%3B Cytochrome c%3B E%3D0.003 gene gene2570 http://www.ncbi.nlm.nih.gov/gene/?term=RB4621 RB4626 RB4626 RB4626 2369165 2369338 - hypothetical protein gene gene2571 http://www.ncbi.nlm.nih.gov/gene/?term=RB4626 RB4627 RB4627 RB4627 2369342 2369515 - hypothetical protein gene gene2572 http://www.ncbi.nlm.nih.gov/gene/?term=RB4627 RB4629 RB4629 RB4629 2369590 2369868 - hypothetical protein best DB hits: BLAST: pir:D83447%3B conserved hypothetical protein PA1574 [imported] -%3B E%3D5e-21 swissprot:P36768%3B YAIE_ECOLI HYPOTHETICAL 10.2 KD PROTEIN IN%3B E%3D2e-15 pir:A82395%3B conserved hypothetical protein VCA0970 [imported] -%3B E%3D4e-11 COG: PA1574%3B COG3123 Uncharacterized BCR%3B E%3D5e-22 gene gene2573 http://www.ncbi.nlm.nih.gov/gene/?term=RB4629 RB463 RB463 RB463 250803 251342 + hypothetical protein gene gene268 http://www.ncbi.nlm.nih.gov/gene/?term=RB463 RB4631 RB4631 RB4631 2369965 2371299 - aminotransferase best DB hits: BLAST: gb:AAC38670.2%3B (AF062345) perosamine synthetase%3B LpsC%3B E%3D9e-10 gb:AAB81626.1%3B (AF025396) probable perosamine synthetase [Vibrio%3B E%3D1e-08 gb:AAD28492.1%3B AF145039_4 (AF145039) aminotransferase spcS2%3B E%3D5e-08 COG: PAB0774%3B COG0399 Predicted pyridoxal phosphate-dependent enzyme%3B E%3D1e-08 PFAM: PF01041%3B DegT/DnrJ/EryC1/StrS family%3B E%3D0.099 gene gene2574 http://www.ncbi.nlm.nih.gov/gene/?term=RB4631 RB4632 RB4632 RB4632 2371386 2371805 + preprotein translocase subunit yajC best DB hits: BLAST: ddbj:BAB04948.1%3B (AP001511) BH1229~~unknown conserved protein%3B E%3D3e-04 gb:AAK02312.1%3B (AE006057) YajC [Pasteurella multocida]%3B E%3D3e-04 pir:D72325%3B hypothetical protein - Thermotoga maritima (strain MSB8)%3B E%3D5e-04 COG: BH1229%3B COG1862 Preprotein translocase subunit YajC%3B E%3D3e-05 PFAM: PF02699%3B Uncharacterized secreted proteins%2C Y%3B E%3D5.5e-17 gene gene2575 http://www.ncbi.nlm.nih.gov/gene/?term=RB4632 RB4633 RB4633 secD secD 2371842 2375180 + protein-export membrane protein secD PMID: 10910347 best DB hits: BLAST: pir:A82832%3B protein-export membrane protein XF0225 [imported] -%3B E%3D8e-45 swissprot:Q55610%3B SECD_SYNY3 PROTEIN-EXPORT MEMBRANE PROTEIN SECD%3B E%3D1e-44 swissprot:O67102%3B SECD_AQUAE PROTEIN-EXPORT MEMBRANE PROTEIN SECD%3B E%3D3e-42 COG: XF0225%3B COG0342 Preprotein translocase subunit SecD%3B E%3D7e-46 PFAM: PF02355%3B Protein export membrane protein%3B E%3D0.012 PF00654%3B Voltage gated chloride channel%3B E%3D0.18 PF02355%3B Protein export membrane protein%3B E%3D6.6e-66 gene gene2576 http://www.ncbi.nlm.nih.gov/gene/?term=RB4633 RB4636 RB4636 RB4636 2374181 2374681 - signal peptide gene gene2577 http://www.ncbi.nlm.nih.gov/gene/?term=RB4636 RB4638 RB4638 aslA aslA 2375327 2376823 + arylsulphatase A PMID: 7910580 PMID: 2303452 best DB hits: BLAST: embl:CAA36398.1%3B (X52150) arylsulphatase a [Homo sapiens]%3B E%3D3e-41 gb:AAB03341.1%3B (U62317) arylsulfatase A [Homo sapiens]%3B E%3D3e-41 pdb:1E2S%3B P Chain P%2C Crystal Structure Of An Arylsulfatase A%3B E%3D3e-40 COG: PA0183%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D6e-29 HI1246%3B COG1368 Phosphoglycerol transferase and related proteins%2C%3B E%3D4e-05 VNG0061C%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D5e-04 PFAM: PF00884%3B Sulfatase%3B E%3D2.4e-48 gene gene2578 http://www.ncbi.nlm.nih.gov/gene/?term=RB4638 RB4639 RB4639 RB4639 2376830 2377000 + hypothetical protein gene gene2579 http://www.ncbi.nlm.nih.gov/gene/?term=RB4639 RB464 RB464 RB464 251275 251688 + hypothetical protein gene gene269 http://www.ncbi.nlm.nih.gov/gene/?term=RB464 RB4640 RB4640 RB4640 2377043 2377399 - hypothetical protein gene gene2580 http://www.ncbi.nlm.nih.gov/gene/?term=RB4640 RB4641 RB4641 RB4641 2377086 2377328 - hypothetical protein gene gene2581 http://www.ncbi.nlm.nih.gov/gene/?term=RB4641 RB4642 RB4642 RB4642 2377301 2377558 + hypothetical protein PMID: 11679351 gene gene2582 http://www.ncbi.nlm.nih.gov/gene/?term=RB4642 RB4643 RB4643 RB4643 2377555 2377845 + hypothetical protein gene gene2583 http://www.ncbi.nlm.nih.gov/gene/?term=RB4643 RB4644 RB4644 RB4644 2377769 2378095 + hypothetical protein gene gene2584 http://www.ncbi.nlm.nih.gov/gene/?term=RB4644 RB4645 RB4645 RB4645 2378057 2378266 - hypothetical protein gene gene2585 http://www.ncbi.nlm.nih.gov/gene/?term=RB4645 RB4646 RB4646 cox3 cox3 2378286 2378894 - cytochrome c oxidase%2C subunit III PMID: 2562384 best DB hits: BLAST: pir:A83632%3B cytochrome c oxidase%2C subunit III PA0108 [imported] -%3B E%3D6e-04 gb:AAG19157.1%3B (AE005013) cytochrome c oxidase subunit III%3B CoxC%3B E%3D0.007 gb:AAC09434.1%3B (M68929) coxIII [Marchantia polymorpha]%3B E%3D0.059 COG: PA0108%3B COG1845 Heme/copper-type cytochrome/quinol oxidase%2C subunit%3B E%3D6e-05 VNG0662G%3B COG1845 Heme/copper-type cytochrome/quinol oxidase%2C%3B E%3D7e-04 PFAM: PF00510%3B Cytochrome c oxidase subunit III%3B E%3D0.55 gene gene2586 http://www.ncbi.nlm.nih.gov/gene/?term=RB4646 RB4648 RB4648 RB4648 2378986 2379429 + hypothetical protein gene gene2587 http://www.ncbi.nlm.nih.gov/gene/?term=RB4648 RB4649 RB4649 RB4649 2379014 2379238 - hypothetical protein gene gene2588 http://www.ncbi.nlm.nih.gov/gene/?term=RB4649 RB4650 RB4650 RB4650 2379380 2379601 - hypothetical protein gene gene2589 http://www.ncbi.nlm.nih.gov/gene/?term=RB4650 RB4651 RB4651 thiG thiG 2379598 2380461 - thiazole synthase functions in thiamine (vitamin B1) biosynthesis%3B in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate gene gene2590 http://www.ncbi.nlm.nih.gov/gene/?term=RB4651 RB4652 RB4652 RB4652 2380494 2380652 + hypothetical protein gene gene2591 http://www.ncbi.nlm.nih.gov/gene/?term=RB4652 RB4653 RB4653 RB4653 2380658 2380870 - hypothetical protein best DB hits: BLAST: pir:D83599%3B conserved hypothetical protein PA0380 [imported] -%3B E%3D5e-07 pir:T35489%3B hypothetical protein SC6E10.02 - Streptomyces%3B E%3D2e-06 gb:AAC08230.1%3B (U38804) ORF71 [Porphyra purpurea]%3B E%3D1e-05 COG: PA0380%3B COG2104 Uncharacterized ACR%2C possibly involved in thiamine%3B E%3D5e-08 ssr0102%3B COG2104 Uncharacterized ACR%2C possibly involved in%3B E%3D0.001 thiS%3B COG2104 Uncharacterized ACR%2C possibly involved in thiamine%3B E%3D0.006 PFAM: PF02597%3B Uncharacterized ACR%2C COG2104%3B E%3D2e-11 gene gene2592 http://www.ncbi.nlm.nih.gov/gene/?term=RB4653 RB4654 RB4654 RB4654 2380867 2381871 - hypothetical protein best DB hits: BLAST: pir:T34928%3B hypothetical protein SC3F9.06 SC3F9.06 - Streptomyces%3B E%3D1e-112 ddbj:BAB04968.1%3B (AP001511) BH1249~~unknown conserved protein%3B E%3D2e-10 swissprot:P54724%3B YFIH_BACSU HYPOTHETICAL 34.8 KD PROTEIN IN GLVBC%3B E%3D2e-08 gene gene2593 http://www.ncbi.nlm.nih.gov/gene/?term=RB4654 RB4657 RB4657 RB4657 2381865 2382236 + hypothetical protein gene gene2594 http://www.ncbi.nlm.nih.gov/gene/?term=RB4657 RB4658 RB4658 RB4658 2382199 2382780 - inosine monophosphate dehydrogenase-like protein best DB hits: BLAST: embl:CAB16799.1%3B (Z99707) protein [Arabidopsis thaliana]%3B E%3D7e-05 swissprot:Q58622%3B YC25_METJA HYPOTHETICAL PROTEIN MJ1225 -----%3B E%3D2e-04 pir:E82251%3B inosine monophosphate dehydrogenase-related protein%3B E%3D3e-04 COG: MJ1225%3B COG0517 CBS domains%3B E%3D2e-05 MTH126%3B COG2524 Predicted transcriptional regulator with C-terminal%3B E%3D8e-05 aq_2023_2%3B COG0517 CBS domains%3B E%3D1e-04 PFAM: PF00571%3B CBS domain%3B E%3D1.6e-11 gene gene2595 http://www.ncbi.nlm.nih.gov/gene/?term=RB4658 RB4659 RB4659 RB4659 2382777 2382941 - hypothetical protein gene gene2596 http://www.ncbi.nlm.nih.gov/gene/?term=RB4659 RB466 RB466 RB466 251791 252036 - hypothetical protein gene gene270 http://www.ncbi.nlm.nih.gov/gene/?term=RB466 RB4660 RB4660 RB4660 2382949 2383479 + hypothetical protein gene gene2597 http://www.ncbi.nlm.nih.gov/gene/?term=RB4660 RB4661 RB4661 RB4661 2383544 2383750 - hypothetical protein gene gene2598 http://www.ncbi.nlm.nih.gov/gene/?term=RB4661 RB4662 RB4662 RB4662 2383563 2383676 + signal peptide gene gene2599 http://www.ncbi.nlm.nih.gov/gene/?term=RB4662 RB4663 RB4663 RB4663 2383642 2384796 + hypothetical protein gene gene2600 http://www.ncbi.nlm.nih.gov/gene/?term=RB4663 RB4667 RB4667 RB4667 2384918 2386273 - hypothetical protein best DB hits: BLAST: gb:AAB89850.1%3B (AE001008) conserved hypothetical protein%3B E%3D0.24 gene gene2601 http://www.ncbi.nlm.nih.gov/gene/?term=RB4667 RB4670 RB4670 RB4670 2386422 2387993 - hypothetical protein best DB hits: BLAST: gb:AAF82144.1%3B AC034256_8 (AC034256) Contains similarity to F-box%3B E%3D8e-04 ddbj:BAB21785.1%3B (AB051481) KIAA1694 protein [Homo sapiens]%3B E%3D0.40 gene gene2602 http://www.ncbi.nlm.nih.gov/gene/?term=RB4670 RB4673 RB4673 ruvC ruvC 2388047 2388583 - crossover junction endodeoxyribonuclease ruvC PMID: 1657895 PMID: 1885548 PMID: 1758493 PMID: 9442895 best DB hits: BLAST: pir:H82149%3B crossover junction endodeoxyribonuclease RuvC VC1847%3B E%3D6e-19 swissprot:O83530%3B RUVC_TREPA CROSSOVER JUNCTION%3B E%3D8e-19 pir:F81271%3B crossover junction endodeoxyribonuclease (EC 3.1.22.4)%3B E%3D2e-16 COG: VC1847%3B COG0817 Holliday junction resolvasome endonuclease subunit%3B E%3D6e-20 PFAM: PF02075%3B Crossover junction endodeoxyribonucl%3B E%3D1.1e-46 gene gene2603 http://www.ncbi.nlm.nih.gov/gene/?term=RB4673 RB4675 RB4675 cysS cysS 2388565 2390451 - cysteinyl-tRNA synthetase PMID: 2014166 PMID: 1864365 best DB hits: BLAST: gb:AAK03029.1%3B (AE006134) CysS [Pasteurella multocida]%3B E%3D5e-91 swissprot:Q9KGF4%3B SYC_BACHD CYSTEINYL-TRNA SYNTHETASE%3B E%3D2e-89 swissprot:O58370%3B SYC_PYRHO CYSTEINYL-TRNA SYNTHETASE%3B E%3D3e-88 COG: BH0111%3B COG0215 Cysteinyl-tRNA synthetase%3B E%3D2e-90 PFAM: PF01406%3B tRNA synthetases class I (C)%3B E%3D1.8e-122 gene gene2604 http://www.ncbi.nlm.nih.gov/gene/?term=RB4675 RB4676 RB4676 RB4676 2390414 2391079 - hypothetical protein gene gene2605 http://www.ncbi.nlm.nih.gov/gene/?term=RB4676 RB4678 RB4678 RB4678 2390618 2391217 + signal peptide gene gene2606 http://www.ncbi.nlm.nih.gov/gene/?term=RB4678 RB4679 RB4679 RB4679 2391214 2391741 + signal peptide best DB hits: PFAM: PF01336%3B OB-fold nucleic acid binding domain%3B E%3D0.015 gene gene2607 http://www.ncbi.nlm.nih.gov/gene/?term=RB4679 RB468 RB468 RB468 252026 252319 - hypothetical protein gene gene271 http://www.ncbi.nlm.nih.gov/gene/?term=RB468 RB4681 RB4681 RB4681 2391934 2392131 + cold shock protein scoF PMID: 90231432 PMID: 94293754 best DB hits: BLAST: swissprot:P48859%3B CSPF_STRCO COLD SHOCK PROTEIN SCOF -----%3B E%3D8e-10 embl:CAB76978.1%3B (AL159178) cold-shock protein [Streptomyces%3B E%3D2e-09 pir:T34593%3B cold-shock domain protein - Streptomyces coelicolor%3B E%3D1e-08 COG: XF2352%3B COG1278 Cold shock proteins%3B E%3D2e-08 PFAM: PF00313%3B 'Cold-shock' DNA-binding domain%3B E%3D2.2e-19 gene gene2608 http://www.ncbi.nlm.nih.gov/gene/?term=RB4681 RB4682 RB4682 RB4682 2392260 2392727 + hypothetical protein gene gene2609 http://www.ncbi.nlm.nih.gov/gene/?term=RB4682 RB4685 RB4685 RB4685 2392889 2395486 - hypothetical protein best DB hits: PFAM: PF00515%3B TPR Domain%3B E%3D0.00063 gene gene2610 http://www.ncbi.nlm.nih.gov/gene/?term=RB4685 RB469 RB469 RB469 252291 252425 - hypothetical protein best DB hits: PFAM: PF00665%3B Integrase core domain%3B E%3D0.2 gene gene272 http://www.ncbi.nlm.nih.gov/gene/?term=RB469 RB4691 RB4691 RB4691 2395001 2395855 + hypothetical protein gene gene2611 http://www.ncbi.nlm.nih.gov/gene/?term=RB4691 RB4692 RB4692 RB4692 2395824 2396198 + hypothetical protein best DB hits: BLAST: pir:S31926%3B myosin IB heavy chain%2C brush border - chicken -----%3B E%3D0.12 gene gene2612 http://www.ncbi.nlm.nih.gov/gene/?term=RB4692 RB4694 RB4694 RB4694 2396117 2397352 + signal peptide PMID: 2898203 best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene2613 http://www.ncbi.nlm.nih.gov/gene/?term=RB4694 RB4697 RB4697 RB4697 2397357 2397539 + signal peptide gene gene2614 http://www.ncbi.nlm.nih.gov/gene/?term=RB4697 RB4698 RB4698 RB4698 2397601 2397861 + hypothetical protein gene gene2615 http://www.ncbi.nlm.nih.gov/gene/?term=RB4698 RB4699 RB4699 RB4699 2397798 2400146 - hypothetical protein PMID: 7528875 best DB hits: BLAST: ddbj:BAB04561.1%3B (AP001510) BH0842~~unknown conserved protein%3B E%3D2e-09 embl:CAB56146.1%3B (AL117669) large secreted protein%3B E%3D7e-07 embl:CAB91126.1%3B (AL355913) hypothetical protein SC5H4.14%3B E%3D0.17 gene gene2616 http://www.ncbi.nlm.nih.gov/gene/?term=RB4699 RB470 RB470 RB470 252456 252713 - transposase PMID: 7518087 best DB hits: BLAST: embl:CAB46576.1%3B (AJ132945) IS1329 transposase B [Yersinia%3B E%3D2e-09 embl:CAB61574.1%3B (AJ251581) transposase B [Yersinia%3B E%3D2e-09 prf:2113421B%3B transposase [Burkholderia cepacia]%3B E%3D4e-09 COG: DRB0019.2%3B COG2801 transposase%3B E%3D5e-12 PFAM: PF00665%3B Integrase core domain%3B E%3D5.4e-05 gene gene273 http://www.ncbi.nlm.nih.gov/gene/?term=RB470 RB4702 RB4702 RB4702 2400274 2401710 - lipase/esterase PMID: 10509949 best DB hits: BLAST: pir:B75555%3B probable lipaseesterase - Deinococcus radiodurans%3B E%3D6e-08 swissprot:Q04457%3B EST1_CAEEL GUT ESTERASE PRECURSOR (NON-SPECIFIC%3B E%3D9e-06 pir:T32061%3B gut-specific carboxylesterase ges-1 - Caenorhabditis%3B E%3D9e-06 COG: DR0133%3B COG0657 Acetyl esterase%3B E%3D6e-09 gene gene2617 http://www.ncbi.nlm.nih.gov/gene/?term=RB4702 RB4703 RB4703 RB4703 2401532 2403604 + hypothetical protein gene gene2618 http://www.ncbi.nlm.nih.gov/gene/?term=RB4703 RB4704 RB4704 RB4704 2403601 2403714 + hypothetical protein gene gene2619 http://www.ncbi.nlm.nih.gov/gene/?term=RB4704 RB4705 RB4705 RB4705 2403694 2403864 - hypothetical protein gene gene2620 http://www.ncbi.nlm.nih.gov/gene/?term=RB4705 RB4707 RB4707 RB4707 2403890 2404960 - large multifunctional protein- glycosyl hydrolase best DB hits: BLAST: embl:CAB45032.1%3B (AL078635) large multi-functional%3B E%3D6e-13 embl:CAB58265.1%3B (AL121849) multi-domain protein%3B E%3D3e-10 gene gene2621 http://www.ncbi.nlm.nih.gov/gene/?term=RB4707 RB4709 RB4709 RB4709 2404884 2405132 - hypothetical protein gene gene2622 http://www.ncbi.nlm.nih.gov/gene/?term=RB4709 RB471 RB471 RB471 252719 253264 - hypothetical protein gene gene274 http://www.ncbi.nlm.nih.gov/gene/?term=RB471 RB4711 RB4711 RB4711 2405152 2405601 + hypothetical protein PMID: 11823852 best DB hits: BLAST: gb:AAK02297.1%3B (AE006055) unknown [Pasteurella multocida]%3B E%3D0.011 pir:E83286%3B conserved hypothetical protein PA2864 [imported] -%3B E%3D0.018 pir:B81002%3B conserved hypothetical protein NMB2140 [imported] -%3B E%3D0.033 COG: PA2864%3B COG2259 Predicted membrane protein%3B E%3D0.002 NMB2140%3B COG3229 Uncharacterized membrane protein%3B E%3D0.003 Rv3005c%3B COG2259 Predicted membrane protein%3B E%3D0.010 gene gene2623 http://www.ncbi.nlm.nih.gov/gene/?term=RB4711 RB4712 RB4712 RB4712 2405757 2406704 + hypothetical protein PMID: 97000351 best DB hits: BLAST: embl:CAB61593.1%3B (AL133210) hypothetical protein SCG11A.12%3B E%3D2e-59 pir:T35546%3B hypothetical protein SC6G3.02 - Streptomyces coelicolor%3B E%3D2e-36 gene gene2624 http://www.ncbi.nlm.nih.gov/gene/?term=RB4712 RB4713 RB4713 RB4713 2406701 2411998 + hypothetical protein PMID: 97000351 best DB hits: BLAST: embl:CAB61594.1%3B (AL133210) hypothetical protein SCG11A.13%3B E%3D1e-63 pir:T35547%3B hypothetical protein SC6G3.03 - Streptomyces coelicolor%3B E%3D1e-25 gene gene2625 http://www.ncbi.nlm.nih.gov/gene/?term=RB4713 RB4714 RB4714 RB4714 2412041 2413339 + hypothetical protein PMID: 97000351 best DB hits: BLAST: embl:CAB61595.1%3B (AL133210) hypothetical protein SCG11A.14%3B E%3D3e-96 gb:AAG57184.1%3B AE005439_3 (AE005439) orf%2C hypothetical protein%3B E%3D1e-69 swissprot:P33348%3B YEHL_ECOLI HYPOTHETICAL 42.4 KD PROTEIN IN%3B E%3D3e-69 COG: yehL%3B COG0714 MoxR-like ATPases%3B E%3D3e-70 gene gene2626 http://www.ncbi.nlm.nih.gov/gene/?term=RB4714 RB4715 RB4715 RB4715 2413294 2417169 + hypothetical protein best DB hits: BLAST: pir:T35548%3B hypothetical protein SC6G3.04 - Streptomyces coelicolor%3B E%3D1e-145 embl:CAB61596.1%3B (AL133210) hypothetical protein SCG11A.15%3B E%3D5e-93 swissprot:P33352%3B YEHP_ECOLI HYPOTHETICAL 42.1 KD PROTEIN IN%3B E%3D5e-27 gene gene2627 http://www.ncbi.nlm.nih.gov/gene/?term=RB4715 RB4716 RB4716 RB4716 2416977 2419019 + hypothetical protein best DB hits: BLAST: pir:T35549%3B hypothetical protein SC6G3.05 - Streptomyces coelicolor%3B E%3D4e-13 gene gene2628 http://www.ncbi.nlm.nih.gov/gene/?term=RB4716 RB4719 RB4719 RB4719 2419112 2419276 - hypothetical protein gene gene2629 http://www.ncbi.nlm.nih.gov/gene/?term=RB4719 RB472 RB472 RB472 253266 253409 + hypothetical protein gene gene275 http://www.ncbi.nlm.nih.gov/gene/?term=RB472 RB4721 RB4721 RB4721 2419331 2420059 + hypothetical protein best DB hits: BLAST: pir:S77109%3B hypothetical protein slr1870 - Synechocystis sp. (strain%3B E%3D1e-63 pir:D81437%3B hypothetical protein Cj0189c [imported] - Campylobacter%3B E%3D2e-24 pir:C71266%3B conserved hypothetical protein TP0894 - syphilis%3B E%3D8e-20 COG: slr1870%3B COG1432 Uncharacterized ACR%3B E%3D1e-64 gene gene2630 http://www.ncbi.nlm.nih.gov/gene/?term=RB4721 RB4722 RB4722 RB4722 2420005 2420253 - hypothetical protein gene gene2631 http://www.ncbi.nlm.nih.gov/gene/?term=RB4722 RB4723 RB4723 RB4723 2420330 2420698 + hypothetical protein gene gene2632 http://www.ncbi.nlm.nih.gov/gene/?term=RB4723 RB4724 RB4724 RB4724 2420720 2421355 + TetR family transcriptional regulator PMID: 95126562 PMID: 94254732 PMID: 93155125 best DB hits: BLAST: embl:CAC03633.1%3B (AL391338) TetR-family transcriptional%3B E%3D2e-14 pir:E70831%3B probable transcriptional regulator Rv0452 - Mycobacterium%3B E%3D2e-10 pir:E75525%3B transcriptional regulator%2C TetR family - Deinococcus%3B E%3D8e-08 COG: Rv0452%3B COG1309 Transcriptional regulator%3B E%3D2e-11 PFAM: PF00440%3B Bacterial regulatory proteins%3B E%3D9e-14 gene gene2633 http://www.ncbi.nlm.nih.gov/gene/?term=RB4724 RB4725 RB4725 RB4725 2421395 2422342 + oxidoreductase yajO1 PMID: 95260797 PMID: 81247357 best DB hits: BLAST: gb:AAG19016.1%3B (AE005001) probable oxidoreductase%3B YajO1%3B E%3D8e-35 pir:C70863%3B hypothetical protein Rv2263 - Mycobacterium tuberculosis%3B E%3D2e-32 pir:H70829%3B hypothetical protein Rv0439c - Mycobacterium%3B E%3D7e-32 COG: VNG0479G%3B COG1028 Dehydrogenases with different specificities%3B E%3D8e-36 Rv2263%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D1e-33 Rv0439c%3B COG1028 Dehydrogenases with different specificities%3B E%3D7e-33 PFAM: PF00106%3B short chain dehydrogenase%3B E%3D6.1e-26 gene gene2634 http://www.ncbi.nlm.nih.gov/gene/?term=RB4725 RB4727 RB4727 RB4727 2422602 2422766 + hypothetical protein gene gene2635 http://www.ncbi.nlm.nih.gov/gene/?term=RB4727 RB4728 RB4728 RB4728 2422809 2423843 - serine/threonine kinase PMID: 11410353 PMID: 10627033 PMID: 10496921 PMID: 9001395 best DB hits: BLAST: pir:G71532%3B probable threoninetyrosine-specific protein kinase (EC%3B E%3D1e-25 gb:AAF73573.1%3B (AE002326) serinethreonine protein kinase%3B E%3D5e-22 pir:T36501%3B probable serinethreonine protein kinase - Streptomyces%3B E%3D3e-20 COG: CT301_1%3B COG0515 Serine/threonine protein kinases%3B E%3D1e-26 PFAM: PF02473%3B Oxygen-independent Coproporphy%3B E%3D0.8 PF00069%3B Protein kinase domain%3B E%3D5.9e-29 gene gene2636 http://www.ncbi.nlm.nih.gov/gene/?term=RB4728 RB4729 RB4729 RB4729 2423840 2424757 - signal peptide gene gene2637 http://www.ncbi.nlm.nih.gov/gene/?term=RB4729 RB473 RB473 RB473 253418 253648 + signal peptide gene gene276 http://www.ncbi.nlm.nih.gov/gene/?term=RB473 RB4730 RB4730 RB4730 2424786 2426309 + hypothetical protein gene gene2638 http://www.ncbi.nlm.nih.gov/gene/?term=RB4730 RB4732 RB4732 RB4732 2426440 2426946 - shikimate kinase PMID: 11466286 PMID: 95337427 PMID: 95218635 best DB hits: BLAST: pir:T36945%3B hypothetical protein SCJ1.12 - Streptomyces coelicolor%3B E%3D0.27 swissprot:P95014%3B AROK_MYCTU SHIKIMATE KINASE (SK) -----%3B E%3D0.40 PFAM: PF01202%3B Shikimate kinase%3B E%3D0.52 gene gene2639 http://www.ncbi.nlm.nih.gov/gene/?term=RB4732 RB4735 RB4735 RB4735 2427014 2427235 - hypothetical protein gene gene2640 http://www.ncbi.nlm.nih.gov/gene/?term=RB4735 RB4736 RB4736 RB4736 2427190 2427678 + hypothetical protein gene gene2641 http://www.ncbi.nlm.nih.gov/gene/?term=RB4736 RB4737 RB4737 fbaB fbaB 2427878 2428978 + fructose-bisphosphate aldolase catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1%2C6-bisphosphate gene gene2642 http://www.ncbi.nlm.nih.gov/gene/?term=RB4737 RB4738 RB4738 RB4738 2429016 2430029 - dihydroorotate dehydrogenase 2 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway%3B uses a flavin nucleotide as an essential cofactor%3B class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus%2C which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors gene gene2643 http://www.ncbi.nlm.nih.gov/gene/?term=RB4738 RB4739 RB4739 RB4739 2430063 2431604 - hypothetical protein PMID: 8905231 best DB hits: BLAST: pir:A83058%3B conserved hypothetical protein PA4701 [imported] -%3B E%3D5e-90 gb:AAF00966.1%3B AF183408_14 (AF183408) Uma3 [Microcystis%3B E%3D1e-87 pir:S76584%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D1e-68 COG: PA4701_1%3B COG2187 Uncharacterized BCR%3B E%3D3e-60 PA4701_2%3B COG0645 Predicted kinase%3B E%3D1e-24 PFAM: PF00277%3B Serum amyloid A protein%3B E%3D0.24 PF01583%3B Adenylylsulfate kinase%3B E%3D0.43 gene gene2644 http://www.ncbi.nlm.nih.gov/gene/?term=RB4739 RB4740 RB4740 RB4740 2431814 2431966 + hypothetical protein gene gene2645 http://www.ncbi.nlm.nih.gov/gene/?term=RB4740 RB4741 RB4741 RB4741 2431918 2432364 - signal peptide gene gene2646 http://www.ncbi.nlm.nih.gov/gene/?term=RB4741 RB4742 RB4742 RB4742 2432615 2433589 - hypothetical protein PMID: 7542800 best DB hits: BLAST: pir:H82491%3B conserved hypothetical protein VCA0159 [imported] -%3B E%3D2e-29 pir:G64029%3B hypothetical protein HI1426 - Haemophilus influenzae%3B E%3D1e-20 swissprot:P44195%3B YDAA_HAEIN HYPOTHETICAL PROTEIN HI1426%3B E%3D1e-20 COG: VCA0159%3B COG0589 Universal stress protein UspA and related%3B E%3D2e-30 PFAM: PF00582%3B Universal stress protein family%3B E%3D0.0026 gene gene2647 http://www.ncbi.nlm.nih.gov/gene/?term=RB4742 RB4744 RB4744 RB4744 2433604 2434533 - hypothetical protein best DB hits: BLAST: pir:A69220%3B conserved hypothetical protein MTH898 - Methanobacterium%3B E%3D6e-10 gb:AAK05956.1%3B AE006416_1 (AE006416) conserved hypothetical%3B E%3D8e-07 pir:A69233%3B conserved hypothetical protein MTH993 - Methanobacterium%3B E%3D3e-06 COG: MTH898%3B COG0589 Universal stress protein UspA and related%3B E%3D6e-11 PFAM: PF00582%3B Universal stress protein family%3B E%3D5.4e-13 gene gene2648 http://www.ncbi.nlm.nih.gov/gene/?term=RB4744 RB4746 RB4746 RB4746 2434530 2434712 - hypothetical protein gene gene2649 http://www.ncbi.nlm.nih.gov/gene/?term=RB4746 RB4748 RB4748 RB4748 2435328 2435465 + hypothetical protein gene gene2650 http://www.ncbi.nlm.nih.gov/gene/?term=RB4748 RB4749 RB4749 POL4 POL4 2435456 2436445 - DNA polymerase X protein PMID: 90319059 PMID: 94089375 best DB hits: BLAST: ddbj:BAA13425.1%3B (D87664) DNA polymerase X [Thermus%3B E%3D1e-09 embl:CAC11891.1%3B (AL445065) DNA-dependent DNA polymerase X%3B E%3D1e-08 pir:G69172%3B DNA-dependent DNA polymerase X - Methanobacterium%3B E%3D6e-08 COG: Ta0758_1%3B COG1796 DNA polymerase IV (family X)%3B E%3D1e-09 gene gene2651 http://www.ncbi.nlm.nih.gov/gene/?term=RB4749 RB475 RB475 RB475 253675 255858 - signal peptide gene gene277 http://www.ncbi.nlm.nih.gov/gene/?term=RB475 RB4750 RB4750 RB4750 2435462 2436076 + signal peptide gene gene2652 http://www.ncbi.nlm.nih.gov/gene/?term=RB4750 RB4752 RB4752 pyrD pyrD 2436459 2437538 - dihydroorotate dehydrogenase 2 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway%3B uses a flavin nucleotide as an essential cofactor%3B class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus%2C which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors gene gene2653 http://www.ncbi.nlm.nih.gov/gene/?term=RB4752 RB4753 RB4753 RB4753 2437483 2437713 + hypothetical protein gene gene2654 http://www.ncbi.nlm.nih.gov/gene/?term=RB4753 RB4754 RB4754 RB4754 2437589 2437765 + hypothetical protein gene gene2655 http://www.ncbi.nlm.nih.gov/gene/?term=RB4754 RB4756 RB4756 RB4756 2437784 2438053 + hypothetical protein best DB hits: BLAST: embl:CAB54060.1%3B (AJ245436) hypothetical protein%2C 91.9 kD%3B E%3D0.19 pir:A82290%3B clpB protein VC0711 [imported] - Vibrio cholerae (group%3B E%3D0.55 embl:CAB93414.1%3B (AL357524) integrase [Streptomyces%3B E%3D0.64 gene gene2656 http://www.ncbi.nlm.nih.gov/gene/?term=RB4756 RB4757 RB4757 RB4757 2438070 2438423 + hypothetical protein gene gene2657 http://www.ncbi.nlm.nih.gov/gene/?term=RB4757 RB4758 RB4758 atoS atoS 2438505 2440034 + sensor protein atoS PMID: 8346225 best DB hits: BLAST: swissprot:Q06067%3B ATOS_ECOLI SENSOR PROTEIN ATOS ----- pir:%3B E%3D1e-26 gb:AAF33505.1%3B (AF170176) Salmonella typhimurium sensor protein%3B E%3D3e-25 gb:AAG59806.1%3B AF305914_1 (AF305914) HydH [Klebsiella oxytoca]%3B E%3D1e-24 COG: atoS_3%3B COG0642 Sensory transduction histidine kinases%3B E%3D1e-27 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D2.2e-12 PF00989%3B PAS domain%3B E%3D1.6e-06 PF00785%3B PAC motif%3B E%3D0.00084 gene gene2658 http://www.ncbi.nlm.nih.gov/gene/?term=RB4758 RB4759 RB4759 RB4759 2439910 2441166 + sensor protein fixL PMID: 2046550 PMID: 1766374 best DB hits: BLAST: swissprot:P26489%3B FIXL_AZOCA SENSOR PROTEIN FIXL ----- pir:%3B E%3D2e-48 swissprot:P23222%3B FIXL_BRAJA SENSOR PROTEIN FIXL ----- pir:%3B E%3D8e-45 swissprot:P10955%3B FIXL_RHIME SENSOR PROTEIN FIXL ----- pir:%3B E%3D2e-43 COG: BS_ykrQ_3%3B COG0642 Sensory transduction histidine kinases%3B E%3D3e-27 PFAM: PF00989%3B PAS domain%3B E%3D1.3e-13 PF00785%3B PAC motif%3B E%3D0.052 PF00512%3B His Kinase A (phosphoacceptor) doma%3B E%3D4.1e-09 gene gene2659 http://www.ncbi.nlm.nih.gov/gene/?term=RB4759 RB4760 RB4760 RB4760 2441163 2441921 + sporulation initiation phosphotransferase F PMID: 3003689 PMID: 2997779 best DB hits: BLAST: pdb:1SRR%3B A Chain A%2C Crystal Structure Of A Phosphatase Resistant%3B E%3D3e-12 swissprot:P06628%3B SP0F_BACSU SPORULATION INITIATION%3B E%3D5e-12 pdb:1F51%3B E Chain E%2C A Transient Interaction Between Two%3B E%3D8e-12 COG: BS_spo0F%3B COG0784 CheY-like receiver domains%3B E%3D4e-13 PA4381%3B COG0745 Response regulators consisting of a CheY-like%3B E%3D5e-11 rcsC_3%3B COG0784 CheY-like receiver domains%3B E%3D5e-11 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D2.5e-23 PF02310%3B B12 binding domain%3B E%3D0.14 PF00072%3B Response regulator receiver doma%3B E%3D4.8e-08 gene gene2660 http://www.ncbi.nlm.nih.gov/gene/?term=RB4760 RB4763 RB4763 RB4763 2441926 2442513 - thiol-disulfide interchange protein dsbD PMID: 9784136 best DB hits: BLAST: pir:H71494%3B probable thiol-disulfide interchange protein dsbD%3B E%3D0.009 pir:H72034%3B thiol-disulfide interchange protein dsbD [imported] -%3B E%3D0.084 pir:G81503%3B thiol-disulfide interchange protein DSbD homolog CP1086%3B E%3D0.084 COG: CT595%3B COG0526 Thiol-disulfide isomerase and thioredoxins%3B E%3D8e-04 gene gene2661 http://www.ncbi.nlm.nih.gov/gene/?term=RB4763 RB4766 RB4766 RB4766 2442599 2442991 - signal peptide gene gene2662 http://www.ncbi.nlm.nih.gov/gene/?term=RB4766 RB4769 RB4769 RB4769 2443052 2444524 - hypothetical protein gene gene2663 http://www.ncbi.nlm.nih.gov/gene/?term=RB4769 RB4770 RB4770 RB4770 2444720 2446432 - ABC transporter best DB hits: BLAST: ddbj:BAB06427.1%3B (AP001516) ABC transporter [Bacillus halodurans]%3B E%3D3e-69 pir:H69086%3B ABC transporter - Methanobacterium thermoautotrophicum%3B E%3D2e-66 pir:D83014%3B conserved hypothetical protein PA5065 [imported] -%3B E%3D6e-59 COG: BH2708%3B COG0661 Predicted unusual protein kinase%3B E%3D3e-70 gene gene2664 http://www.ncbi.nlm.nih.gov/gene/?term=RB4770 RB4771 RB4771 RB4771 2446507 2446638 - hypothetical protein gene gene2665 http://www.ncbi.nlm.nih.gov/gene/?term=RB4771 RB4772 RB4772 RB4772 2446610 2446741 + hypothetical protein gene gene2666 http://www.ncbi.nlm.nih.gov/gene/?term=RB4772 RB4773 RB4773 RB4773 2446723 2447349 + hypothetical protein gene gene2667 http://www.ncbi.nlm.nih.gov/gene/?term=RB4773 RB4775 RB4775 RB4775 2447336 2448637 + hypothetical protein PMID: 2546860 best DB hits: BLAST: pir:JS0237%3B hypothetical 48K protein - Pseudomonas cepacia -----%3B E%3D2e-33 embl:CAA65720.1%3B (X96995) transposase IS1354 [Methylobacterium%3B E%3D7e-13 swissprot:P35880%3B TRA1_LACHE TRANSPOSASE FOR INSERTION SEQUENCE%3B E%3D1e-11 COG: Rv3431c%3B COG3328 Predicted transposase%3B E%3D4e-12 PFAM: PF00872%3B Transposase%2C Mutator family%3B E%3D1.5e-05 gene gene2668 http://www.ncbi.nlm.nih.gov/gene/?term=RB4775 RB4777 RB4777 RB4777 2448693 2449148 + hypothetical protein gene gene2669 http://www.ncbi.nlm.nih.gov/gene/?term=RB4777 RB4778 RB4778 RB4778 2449078 2449599 + hypothetical protein gene gene2670 http://www.ncbi.nlm.nih.gov/gene/?term=RB4778 RB4781 RB4781 RB4781 2449655 2450125 + protein hesB PMID: 99231861 best DB hits: BLAST: swissprot:P18501%3B HESB_ANASP HESB PROTEIN ----- pir: S11901%3B E%3D9e-08 swissprot:P46051%3B HEB1_ANAVA HESB PROTEIN%2C HETEROCYST -----%3B E%3D1e-07 gb:AAF82645.1%3B AF167538_12 (AF167538) HesB [Trichodesmium sp.%3B E%3D2e-07 COG: NMB1381%3B COG0316 Uncharacterized ACR%3B E%3D5e-07 PFAM: PF01521%3B HesB-like domain%3B E%3D4.9e-21 gene gene2671 http://www.ncbi.nlm.nih.gov/gene/?term=RB4781 RB4783 RB4783 RB4783 2450091 2450273 - hypothetical protein gene gene2672 http://www.ncbi.nlm.nih.gov/gene/?term=RB4783 RB4784 RB4784 aslA aslA 2450369 2452069 + arylsulfatase PMID: 7910580 best DB hits: BLAST: ddbj:BAA04535.1%3B (D17629) N-acetylgalactosamine 6-sulfate%3B E%3D4e-27 swissprot:P50428%3B ARSA_MOUSE ARYLSULFATASE A PRECURSOR (ASA)%3B E%3D4e-22 pdb:1E2S%3B P Chain P%2C Crystal Structure Of An Arylsulfatase A%3B E%3D6e-22 COG: PA0183%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D2e-21 PFAM: PF00884%3B Sulfatase%3B E%3D8.8e-25 gene gene2673 http://www.ncbi.nlm.nih.gov/gene/?term=RB4784 RB4787 RB4787 RB4787 2452111 2453523 + N-acetylgalactosamine-6-sulfatase PMID: 10699374 best DB hits: BLAST: gb:AAF63858.1%3B (AF112242) N-acetylgalactosamine-6-sulfate%3B E%3D2e-33 ddbj:BAA04535.1%3B (D17629) N-acetylgalactosamine 6-sulfate%3B E%3D1e-32 pdb:1E2S%3B P Chain P%2C Crystal Structure Of An Arylsulfatase A%3B E%3D4e-31 COG: ydeN%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D1e-28 PFAM: PF00884%3B Sulfatase%3B E%3D8.8e-45 gene gene2674 http://www.ncbi.nlm.nih.gov/gene/?term=RB4787 RB4788 RB4788 RB4788 2453596 2454099 + ankyrin repeat-containing protein best DB hits: BLAST: pir:T03939%3B potassium channel protein - maize ----- embl:%3B E%3D0.001 gb:AAF44358.1%3B AF198100_5 (AF198100) ORF FPV014 Ankyrin repeat%3B E%3D0.002 gb:AAF49551.1%3B (AE003529) CG5841 gene product [Drosophila%3B E%3D0.002 COG: TP0502%3B COG0666 Ankyrin repeat proteins%3B E%3D0.003 PFAM: PF00023%3B Ank repeat%3B E%3D8e-07 gene gene2675 http://www.ncbi.nlm.nih.gov/gene/?term=RB4788 RB479 RB479 RB479 255869 259174 - FKBP-rapamycin associated protein PMID: 8008069 best DB hits: BLAST: gb:AAA58486.1%3B (L34075) FKBP-rapamycin associated protein [Homo%3B E%3D0.21 prf:2014422A%3B FKBP-rapamycin-associated protein [Homo sapiens]%3B E%3D0.21 gb:AAC39933.1%3B (U88966) rapamycin associated protein FRAP2 [Homo%3B E%3D0.21 gene gene278 http://www.ncbi.nlm.nih.gov/gene/?term=RB479 RB4790 RB4790 RB4790 2454092 2454349 + hypothetical protein gene gene2676 http://www.ncbi.nlm.nih.gov/gene/?term=RB4790 RB4792 RB4792 RB4792 2454360 2454998 + hypothetical protein PMID: 90239044 best DB hits: BLAST: swissprot:O53719%3B CLPB_MYCTU CLPB PROTEIN ----- pir: C70834%3B E%3D0.009 gb:AAD00218.1%3B (U73653) clpB [Mycobacterium bovis]%3B E%3D0.009 swissprot:P53532%3B CLPB_CORGL CLPB PROTEIN ----- gb: AAB49540.1%3B E%3D0.010 COG: Rv0384c%3B COG0542 ATPases with chaperone activity%2C ATP-binding domain%3B E%3D9e-04 PFAM: PF00225%3B Kinesin motor domain%3B E%3D0.54 gene gene2677 http://www.ncbi.nlm.nih.gov/gene/?term=RB4792 RB4793 RB4793 RB4793 2454990 2455157 - hypothetical protein gene gene2678 http://www.ncbi.nlm.nih.gov/gene/?term=RB4793 RB4794 RB4794 RB4794 2455190 2455552 - signal peptide gene gene2679 http://www.ncbi.nlm.nih.gov/gene/?term=RB4794 RB4796 RB4796 RB4796 2455572 2455874 - hypothetical protein gene gene2680 http://www.ncbi.nlm.nih.gov/gene/?term=RB4796 RB4797 RB4797 RB4797 2455910 2456020 - hypothetical protein gene gene2681 http://www.ncbi.nlm.nih.gov/gene/?term=RB4797 RB4798 RB4798 RB4798 2456217 2457056 - hypothetical protein gene gene2682 http://www.ncbi.nlm.nih.gov/gene/?term=RB4798 RB4799 RB4799 RB4799 2457202 2458914 + hypothetical protein best DB hits: BLAST: pir:C70893%3B hypothetical protein Rv1069c - Mycobacterium%3B E%3D3e-88 gene gene2683 http://www.ncbi.nlm.nih.gov/gene/?term=RB4799 RB4800 RB4800 RB4800 2458911 2459243 + hypothetical protein gene gene2684 http://www.ncbi.nlm.nih.gov/gene/?term=RB4800 RB4801 RB4801 RB4801 2459212 2459502 - hypothetical protein gene gene2685 http://www.ncbi.nlm.nih.gov/gene/?term=RB4801 RB4802 RB4802 RB4802 2459514 2459687 + hypothetical protein gene gene2686 http://www.ncbi.nlm.nih.gov/gene/?term=RB4802 RB4803 RB4803 RB4803 2459672 2463133 + signal peptide gene gene2687 http://www.ncbi.nlm.nih.gov/gene/?term=RB4803 RB4804 RB4804 RB4804 2460683 2461441 - hypothetical protein gene gene2688 http://www.ncbi.nlm.nih.gov/gene/?term=RB4804 RB4805 RB4805 RB4805 2463134 2464603 + hypothetical protein gene gene2689 http://www.ncbi.nlm.nih.gov/gene/?term=RB4805 RB4807 RB4807 RB4807 2464638 2464883 + hypothetical protein gene gene2690 http://www.ncbi.nlm.nih.gov/gene/?term=RB4807 RB4809 RB4809 RB4809 2464977 2465273 + signal peptide gene gene2691 http://www.ncbi.nlm.nih.gov/gene/?term=RB4809 RB481 RB481 RB481 259182 262586 - hypothetical protein gene gene279 http://www.ncbi.nlm.nih.gov/gene/?term=RB481 RB4810 RB4810 RB4810 2465418 2465774 - hypothetical protein gene gene2692 http://www.ncbi.nlm.nih.gov/gene/?term=RB4810 RB4811 RB4811 RB4811 2465768 2467084 + transposase PMID: 10531208 best DB hits: BLAST: gb:AAD38020.1%3B AF148127_1 (AF148127) transposase [Porphyromonas%3B E%3D2e-13 ddbj:BAA83477.1%3B (AB009361) transposase [Porphyromonas%3B E%3D3e-13 ddbj:BAA92234.1%3B (AB031551) transposase [Bacillus subtilis]%3B E%3D4e-10 COG: BH0691%3B COG3385 Predicted transposase%3B E%3D4e-10 PFAM: PF01609%3B Transposase (IS4 family)%3B E%3D6.2e-08 gene gene2693 http://www.ncbi.nlm.nih.gov/gene/?term=RB4811 RB4812 RB4812 RB4812 2467011 2467289 + hypothetical protein gene gene2694 http://www.ncbi.nlm.nih.gov/gene/?term=RB4812 RB4813 RB4813 RB4813 2467394 2467537 + hypothetical protein gene gene2695 http://www.ncbi.nlm.nih.gov/gene/?term=RB4813 RB4814 RB4814 RB4814 2467537 2467800 + hypothetical protein gene gene2696 http://www.ncbi.nlm.nih.gov/gene/?term=RB4814 RB4815 RB4815 RB4815 2467814 2469289 - arylsulphatase A PMID: 2303452 best DB hits: BLAST: embl:CAA36398.1%3B (X52150) arylsulphatase a [Homo sapiens]%3B E%3D1e-46 gb:AAB03341.1%3B (U62317) arylsulfatase A [Homo sapiens]%3B E%3D1e-46 pdb:1E2S%3B P Chain P%2C Crystal Structure Of An Arylsulfatase A%3B E%3D2e-45 COG: ydeN%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D9e-38 yejM%3B COG3083 Predicted hydrolase of alkaline phosphatase%3B E%3D6e-06 Rv3077%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D1e-04 PFAM: PF00884%3B Sulfatase%3B E%3D3e-48 gene gene2697 http://www.ncbi.nlm.nih.gov/gene/?term=RB4815 RB4818 RB4818 RB4818 2469311 2469535 - hypothetical protein gene gene2698 http://www.ncbi.nlm.nih.gov/gene/?term=RB4818 RB4819 RB4819 RB4819 2469488 2469898 + hypothetical protein gene gene2699 http://www.ncbi.nlm.nih.gov/gene/?term=RB4819 RB4823 RB4823 RB4823 2470119 2470739 + hypothetical protein PMID: 12024217 gene gene2700 http://www.ncbi.nlm.nih.gov/gene/?term=RB4823 RB4825 RB4825 RB4825 2470807 2471103 + hypothetical protein gene gene2701 http://www.ncbi.nlm.nih.gov/gene/?term=RB4825 RB4826 RB4826 RB4826 2471205 2472599 + hypothetical protein best DB hits: BLAST: gb:AAG18661.1%3B (AE004971) Vng0021h [Halobacterium sp. NRC-1]%3B E%3D4e-23 gb:AAG18694.1%3B (AE004974) Vng0056h [Halobacterium sp. NRC-1]%3B E%3D4e-21 pir:T44318%3B transposase homolog [imported] - Vibrio cholerae -----%3B E%3D3e-16 gene gene2702 http://www.ncbi.nlm.nih.gov/gene/?term=RB4826 RB4827 RB4827 RB4827 2472731 2476540 - reverse transcriptase like protein best DB hits: BLAST: ddbj:BAA22286.1%3B (D37918) Reverse transcriptase like protein%3B E%3D0.011 ddbj:BAA84894.1%3B (AB024946) orf59 [Escherichia coli]%3B E%3D0.011 swissprot:Q47688%3B YKFC_ECOLI HYPOTHETICAL 43.2 KDA PROTEIN IN%3B E%3D0.016 PFAM: PF00078%3B Reverse transcriptase (RNA-dependent%3B E%3D0.24 gene gene2703 http://www.ncbi.nlm.nih.gov/gene/?term=RB4827 RB4828 RB4828 RB4828 2476612 2476761 + hypothetical protein gene gene2704 http://www.ncbi.nlm.nih.gov/gene/?term=RB4828 RB483 RB483 RB483 262569 262733 + hypothetical protein gene gene280 http://www.ncbi.nlm.nih.gov/gene/?term=RB483 RB4830 RB4830 RB4830 2476780 2477475 - hypothetical protein gene gene2705 http://www.ncbi.nlm.nih.gov/gene/?term=RB4830 RB4831 RB4831 RB4831 2477634 2478272 - hypothetical protein gene gene2706 http://www.ncbi.nlm.nih.gov/gene/?term=RB4831 RB4832 RB4832 RB4832 2478225 2478443 + hypothetical protein gene gene2707 http://www.ncbi.nlm.nih.gov/gene/?term=RB4832 RB4833 RB4833 RB4833 2478658 2479119 + hypothetical protein gene gene2708 http://www.ncbi.nlm.nih.gov/gene/?term=RB4833 RB4834 RB4834 RB4834 2478856 2479062 - hypothetical protein best DB hits: BLAST: gb:AAK02211.1%3B (AE006047) unknown [Pasteurella multocida]%3B E%3D0.62 swissprot:P44114%3B YB26_HAEIN HYPOTHETICAL PROTEIN HI1126 -----%3B E%3D0.64 gene gene2709 http://www.ncbi.nlm.nih.gov/gene/?term=RB4834 RB4835 RB4835 RB4835 2479184 2480371 - hypothetical protein PMID: 10382966 PMID: 2110920 best DB hits: BLAST: pir:E72574%3B probable membrane protein APE1877 - Aeropyrum pernix%3B E%3D1e-08 pir:G70414%3B conserved hypothetical protein aq_1327 - Aquifex%3B E%3D3e-07 gb:AAG18926.1%3B (AE004994) Vng0361c [Halobacterium sp. NRC-1]%3B E%3D2e-06 COG: APE1877%3B COG0705 Uncharacterized membrane protein (homolog of%3B E%3D1e-09 PFAM: PF01694%3B Rhomboid family%3B E%3D1e-07 gene gene2710 http://www.ncbi.nlm.nih.gov/gene/?term=RB4835 RB4839 RB4839 RB4839 2480519 2481142 + hypothetical protein gene gene2711 http://www.ncbi.nlm.nih.gov/gene/?term=RB4839 RB484 RB484 RB484 262633 262809 + hypothetical protein gene gene281 http://www.ncbi.nlm.nih.gov/gene/?term=RB484 RB4844 RB4844 RB4844 2481716 2481868 + hypothetical protein gene gene2713 http://www.ncbi.nlm.nih.gov/gene/?term=RB4844 RB4846 RB4846 RB4846 2481899 2483977 + signal peptide PMID: 11932238 gene gene2714 http://www.ncbi.nlm.nih.gov/gene/?term=RB4846 RB485 RB485 RB485 262831 262968 + hypothetical protein gene gene282 http://www.ncbi.nlm.nih.gov/gene/?term=RB485 RB4850 RB4850 RB4850 2484018 2484470 + signal peptide gene gene2715 http://www.ncbi.nlm.nih.gov/gene/?term=RB4850 RB4851 RB4851 RB4851 2484507 2485979 - N-acetylgalactosamine 6-sulfatase (GALNS) PMID: 8020961 best DB hits: BLAST: ddbj:BAA04535.1%3B (D17629) N-acetylgalactosamine 6-sulfate%3B E%3D9e-41 gb:AAF63858.1%3B (AF112242) N-acetylgalactosamine-6-sulfate%3B E%3D1e-40 embl:CAA36398.1%3B (X52150) arylsulphatase a [Homo sapiens]%3B E%3D5e-35 COG: aslA%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D3e-28 PAB0793%3B COG2194 Predicted membrane-associated%2C metal-dependent%3B E%3D0.002 PFAM: PF00884%3B Sulfatase%3B E%3D1.9e-40 gene gene2716 http://www.ncbi.nlm.nih.gov/gene/?term=RB4851 RB4854 RB4854 RB4854 2486043 2487347 - signal peptide gene gene2717 http://www.ncbi.nlm.nih.gov/gene/?term=RB4854 RB4856 RB4856 RB4856 2487453 2490002 - signal peptide gene gene2718 http://www.ncbi.nlm.nih.gov/gene/?term=RB4856 RB4858 RB4858 RB4858 2490087 2491427 - hypothetical protein gene gene2719 http://www.ncbi.nlm.nih.gov/gene/?term=RB4858 RB4859 RB4859 RB4859 2491429 2491989 - ECF subfamily RNA polymerase sigma factor gene gene2720 http://www.ncbi.nlm.nih.gov/gene/?term=RB4859 RB486 RB486 RB486 262950 263633 + RNA polymerase ECF-type sigma factor PMID: 8052622 best DB hits: BLAST: pir:E71368%3B probable RNA polymerase sigma-24 factor (rpoE) -%3B E%3D2e-05 gb:AAC45219.1%3B (U87308) extracytoplasmic function alternative%3B E%3D1e-04 pir:T45196%3B probable transcription initiation factor sigma factor%3B E%3D3e-04 COG: TP0092%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D2e-06 Rv3286c%3B COG1191 DNA-directed RNA polymerase specialized sigma%3B E%3D0.005 Rv1189%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D0.005 gene gene283 http://www.ncbi.nlm.nih.gov/gene/?term=RB486 RB4862 RB4862 RB4862 2492119 2493468 - pre-neck appendage protein PMID: 8843436 best DB hits: BLAST: swissprot:Q37893%3B VG12_BPB03 PRE-NECK APPENDAGE PROTEIN (LATE%3B E%3D0.69 gene gene2721 http://www.ncbi.nlm.nih.gov/gene/?term=RB4862 RB4864 RB4864 RB4864 2493642 2495009 - hypothetical protein PMID: 10567266 best DB hits: BLAST: pir:B82062%3B conserved hypothetical protein VC2554 [imported] -%3B E%3D5e-25 gb:AAF12633.1%3B AE001826_102 (AE001826) hypothetical protein%3B E%3D3e-22 pir:A83139%3B hypothetical protein PA4065 [imported] - Pseudomonas%3B E%3D5e-21 COG: VC2554%3B COG0577 Predicted permease%3B E%3D4e-26 PFAM: PF02687%3B Predicted permease%3B E%3D1.3e-16 gene gene2722 http://www.ncbi.nlm.nih.gov/gene/?term=RB4864 RB4866 RB4866 RB4866 2495006 2495722 - lipoprotein releasing system ATP-binding protein lolD PMID: 10783239 best DB hits: BLAST: swissprot:P75957%3B LOLD_ECOLI LIPOPROTEIN RELEASING SYSTEM%3B E%3D6e-38 ddbj:BAA35937.1%3B (D90747) Heterocyst maturation protein (devA)%3B E%3D6e-38 swissprot:O53899%3B Y986_MYCTU HYPOTHETICAL ABC TRANSPORTER%3B E%3D4e-37 COG: Rv0986%3B COG1136 ABC-type (unclassified) transport system%2C ATPase%3B E%3D4e-38 PA5503%3B COG1135 Uncharacterized ABC-type transport system ATPase%3B E%3D6e-33 PA4594%3B COG1136 ABC-type (unclassified) transport system%2C ATPase%3B E%3D8e-33 PFAM: PF00005%3B ABC transporter%3B E%3D9.9e-55 gene gene2723 http://www.ncbi.nlm.nih.gov/gene/?term=RB4866 RB4867 RB4867 smpB smpB 2495722 2496354 - SsrA-binding protein binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes%3B also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site%3B SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus%3B both the tmRNA and SmpB are regulated in cell cycle-dependent manner%3B functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation gene gene2724 http://www.ncbi.nlm.nih.gov/gene/?term=RB4867 RB4868 RB4868 RB4868 2496444 2497394 + lipoyl synthase catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group gene gene2725 http://www.ncbi.nlm.nih.gov/gene/?term=RB4868 RB4869 RB4869 RB4869 2497539 2499143 - permease PMID: 1356969 best DB hits: BLAST: gb:AAK03155.1%3B (AE006148) unknown [Pasteurella multocida]%3B E%3D6e-39 pir:F65170%3B hypothetical 58.9K protein (ibpb 3'region) - Escherichia%3B E%3D9e-37 gb:AAG58887.1%3B AE005600_5 (AE005600) transport protein%3B E%3D1e-36 COG: yidE%3B COG2985 Predicted permease%3B E%3D8e-38 aq_303%3B COG1226 Kef-type K+ transport systems%2C predicted NAD-binding%3B E%3D0.003 DR1411%3B COG0471 Di- and tricarboxylate transporters%3B E%3D0.008 PFAM: PF02080%3B Potassium channel%3B E%3D0.067 gene gene2726 http://www.ncbi.nlm.nih.gov/gene/?term=RB4869 RB4870 RB4870 RB4870 2499282 2502527 - AcrB/AcrD/AcrF family cation efflux system PMID: 10988064 best DB hits: BLAST: gb:AAG10499.1%3B AF279106_61 (AF279106) predicted cation efflux system%3B E%3D5e-95 pir:A83186%3B probable RND efflux transporter PA3676 [imported] -%3B E%3D2e-75 pir:F82829%3B acriflavin resistance protein XF0243 [imported] - Xylella%3B E%3D1e-71 COG: PA3676%3B COG0841 Cation/multidrug efflux pump%3B E%3D2e-76 PFAM: PF00873%3B AcrB/AcrD/AcrF family%3B E%3D6.1e-05 gene gene2727 http://www.ncbi.nlm.nih.gov/gene/?term=RB4870 RB4872 RB4872 RB4872 2502476 2503966 - hypothetical protein PMID: 11206551 best DB hits: BLAST: gb:AAG58620.1%3B AE005573_3 (AE005573) membrane protein%3B E%3D9e-11 swissprot:P37626%3B YHII_ECOLI HYPOTHETICAL 38.8 KD PROTEIN IN%3B E%3D1e-10 pir:G83220%3B hypothetical protein PA3402 [imported] - Pseudomonas%3B E%3D1e-09 COG: yhiI%3B COG0845 Membrane-fusion protein%3B E%3D9e-12 PA2836%3B COG1566 Multidrug resistance efflux pump%3B E%3D2e-04 XF2084%3B COG0845 Membrane-fusion protein%3B E%3D3e-04 PFAM: PF00364%3B Biotin-requiring enzyme%3B E%3D0.14 PF01173%3B Uncharacterized protein family%3B E%3D0.095 PF00529%3B HlyD family secretion protein%3B E%3D2.7e-07 gene gene2728 http://www.ncbi.nlm.nih.gov/gene/?term=RB4872 RB4873 RB4873 RB4873 2503963 2504829 - regulator amrR PMID: 10049252 best DB hits: BLAST: gb:AAC27752.1%3B (AF072887) regulator AmrR [Burkholderia%3B E%3D2e-04 pir:H83274%3B probable transcriptional regulator PA2957 [imported] -%3B E%3D5e-04 swissprot:Q59431%3B UIDR_ECOLI UID OPERON REPRESSOR (GUS OPERON%3B E%3D0.002 COG: PA2957%3B COG1309 Transcriptional regulator%3B E%3D5e-05 PFAM: PF00440%3B Bacterial regulatory proteins%2C tetR%3B E%3D1.1e-10 gene gene2729 http://www.ncbi.nlm.nih.gov/gene/?term=RB4873 RB4875 RB4875 RB4875 2504970 2506157 + hypothetical protein gene gene2730 http://www.ncbi.nlm.nih.gov/gene/?term=RB4875 RB4876 RB4876 RB4876 2505021 2506214 - delta-9 desaturase PMID: 10937442 best DB hits: BLAST: embl:CAA05166.1%3B (AJ002065) delta-9 desaturase [Spirulina%3B E%3D1e-56 gb:AAD00699.1%3B (U90417) delta 9 acyl-lipid fatty acid desaturase%3B E%3D2e-53 gb:AAB61353.1%3B (U36390) delta-9 desaturase [Synechococcus sp. PCC%3B E%3D4e-53 COG: sll0541%3B COG1398 Fatty-acid desaturase%3B E%3D2e-50 PFAM: PF01069%3B Fatty acid desaturase%3B E%3D1.8e-66 gene gene2731 http://www.ncbi.nlm.nih.gov/gene/?term=RB4876 RB4877 RB4877 RB4877 2506310 2507494 + lysine--tRNA ligase genX PMID: 1761227 best DB hits: BLAST: swissprot:Q9ZJ12%3B SYK3_SALTY LYSYL-TRNA SYNTHETASE%3B E%3D1e-57 swissprot:P03812%3B SYK3_ECOLI LYSYL-TRNA SYNTHETASE%3B E%3D2e-57 pir:S56383%3B lysine--tRNA ligase (EC 6.1.1.6) genX - Escherichia coli%3B E%3D2e-57 COG: yjeA%3B COG2269 Truncated%2C possibly inactive Class II lysyl-tRNA%3B E%3D2e-58 DR0372%3B COG1190 Lysyl-tRNA synthetase class II%3B E%3D2e-29 PFAM: PF00152%3B tRNA synthetases class II (D%2C K a%3B E%3D8.7e-07 gene gene2732 http://www.ncbi.nlm.nih.gov/gene/?term=RB4877 RB4879 RB4879 RB4879 2507504 2509108 + nodulin-26 PMID: 3822816 PMID: 1390682 best DB hits: BLAST: pir:T05028%3B nodulin-26-like protein F13C5.80 - Arabidopsis thaliana%3B E%3D2e-47 pir:S01444%3B nodulin-26 precursor - soybean%3B E%3D4e-47 swissprot:P08995%3B NO26_SOYBN NODULIN-26 (N-26) ----- embl:%3B E%3D5e-47 COG: PA4034%3B COG0580 Glycerol uptake facilitator and related permeases%3B E%3D2e-25 PFAM: PF00230%3B Major intrinsic protein%3B E%3D6.6e-52 gene gene2733 http://www.ncbi.nlm.nih.gov/gene/?term=RB4879 RB488 RB488 RB488 263647 266280 + hypothetical protein gene gene284 http://www.ncbi.nlm.nih.gov/gene/?term=RB488 RB4880 RB4880 RB4880 2509233 2510837 + mucin-desulfating sulfatase (N-acetylglucosamine-6-sulfatase) PMID: 10809675 best DB hits: BLAST: gb:AAF72520.1%3B AF248951_1 (AF248951) mucin-desulfating sulfatase%3B E%3D4e-65 gb:AAK03766.1%3B (AE006204) unknown [Pasteurella multocida]%3B E%3D8e-34 gb:AAG58881.1%3B AE005599_13 (AE005599) sulfatase%3B E%3D9e-33 COG: yidJ%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D2e-33 PAB0793%3B COG2194 Predicted membrane-associated%2C metal-dependent%3B E%3D6e-10 VNG1337C%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D7e-08 PFAM: PF00884%3B Sulfatase%3B E%3D2.4e-75 gene gene2734 http://www.ncbi.nlm.nih.gov/gene/?term=RB4880 RB4881 RB4881 RB4881 2511051 2512226 + hypothetical protein PMID: 11214968 best DB hits: BLAST: embl:CAB61226.1%3B (Y17305) hypothetical protein [Bacillus%3B E%3D0.092 gene gene2735 http://www.ncbi.nlm.nih.gov/gene/?term=RB4881 RB4883 RB4883 RB4883 2512219 2512428 + hypothetical protein gene gene2736 http://www.ncbi.nlm.nih.gov/gene/?term=RB4883 RB4884 RB4884 RB4884 2512531 2512977 - signal peptide gene gene2737 http://www.ncbi.nlm.nih.gov/gene/?term=RB4884 RB4886 RB4886 RB4886 2513010 2513213 - hypothetical protein gene gene2738 http://www.ncbi.nlm.nih.gov/gene/?term=RB4886 RB4887 RB4887 hemG hemG 2513247 2514149 + protoporphyrinogen oxidase PMID: 7916647 PMID: 7788523 best DB hits: BLAST: gb:AAA67647.1%3B (M87049) o181 [Escherichia coli]%3B E%3D1e-22 swissprot:P27863%3B HEMG_ECOLI PROTOPORPHYRINOGEN OXIDASE (PPO)%3B E%3D2e-22 pir:S30741%3B hypothetical protein o181 - Escherichia coli%3B E%3D4e-22 COG: hemG%3B COG0716 Flavodoxins%3B E%3D2e-23 PFAM: PF00258%3B Flavodoxin%3B E%3D0.00015 gene gene2739 http://www.ncbi.nlm.nih.gov/gene/?term=RB4887 RB4890 RB4890 RB4890 2514257 2514418 + hypothetical protein gene gene2740 http://www.ncbi.nlm.nih.gov/gene/?term=RB4890 RB4891 RB4891 RB4891 2514545 2516491 - cadmium-transporting ATPase PMID: 8188606 PMID: 8188605 best DB hits: BLAST: gb:AAK04193.1%3B AE006248_1 (AE006248) cadmium efflux ATPase%3B E%3D6e-74 pir:T36946%3B probable cation-transporting ATPase - Streptomyces%3B E%3D3e-73 ddbj:BAB07755.1%3B (AP001520) cadmium-transporting ATPase [Bacillus%3B E%3D4e-62 COG: BH4036%3B COG2217 Cation transport ATPases%3B E%3D4e-63 PFAM: PF00122%3B E1-E2 ATPase%3B E%3D9.5e-42 PF00702%3B haloacid dehalogenase-like hydro%3B E%3D2.3e-15 gene gene2741 http://www.ncbi.nlm.nih.gov/gene/?term=RB4891 RB4892 RB4892 RB4892 2516410 2516640 - hypothetical protein gene gene2742 http://www.ncbi.nlm.nih.gov/gene/?term=RB4892 RB4894 RB4894 glgX glgX 2516801 2518939 - glycogen operon protein glgX-2 PMID: 8905231 PMID: 92082464 PMID: 93356744 best DB hits: BLAST: pir:S77094%3B glycogen operon protein (EC 3.2.1.-) glgX-2 -%3B E%3D1e-125 pir:S74546%3B glycogen operon protein (EC 3.2.1.-) glgX-1 -%3B E%3D1e-124 pir:S73088%3B glycogen operon protein glgX (EC 3.2.1.-) - Sulfolobus%3B E%3D1e-113 COG: slr1857%3B COG1523 Pullulanase and related glycosidases%3B E%3D1e-126 DR0464%3B COG0296 1%2C4-alpha-glucan branching enzyme%3B E%3D7e-17 DR0405%3B COG1523 Pullulanase and related glycosidases%3B E%3D8e-15 PFAM: PF02922%3B Isoamylase N-terminal domain%3B E%3D6.7e-23 PF00128%3B Alpha amylase%2C catalytic domai%3B E%3D3.3e-17 gene gene2743 http://www.ncbi.nlm.nih.gov/gene/?term=RB4894 RB4897 RB4897 RB4897 2518951 2519505 - hypothetical protein gene gene2744 http://www.ncbi.nlm.nih.gov/gene/?term=RB4897 RB490 RB490 RB490 266293 267636 + hypothetical protein PMID: 11823852 gene gene285 http://www.ncbi.nlm.nih.gov/gene/?term=RB490 RB4900 RB4900 RB4900 2519567 2520067 - hypothetical protein gene gene2745 http://www.ncbi.nlm.nih.gov/gene/?term=RB4900 RB4901 RB4901 RB4901 2520103 2520741 - hypothetical protein gene gene2746 http://www.ncbi.nlm.nih.gov/gene/?term=RB4901 RB4902 RB4902 RB4902 2520683 2520904 - hypothetical protein gene gene2747 http://www.ncbi.nlm.nih.gov/gene/?term=RB4902 RB4903 RB4903 RB4903 2520925 2523306 + phosphoketolase best DB hits: BLAST: pir:S76896%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D0.0 gb:AAK05600.1%3B AE006381_1 (AE006381) phosphoketolase [Lactococcus%3B E%3D0.0 embl:CAB62746.1%3B (AL133424) hypothetical protein SCF56.01c%3B E%3D0.0 COG: slr0453%3B COG0021 Transketolase%3B E%3D0.0 gene gene2748 http://www.ncbi.nlm.nih.gov/gene/?term=RB4903 RB4904 RB4904 RB4904 2523288 2523899 + mutase best DB hits: BLAST: embl:CAC10115.1%3B (AL442165) mutase [Streptomyces%3B E%3D5e-37 embl:CAB61320.1%3B (AL132997) phosphatase [Streptomyces%3B E%3D2e-27 pir:G70595%3B probable entD protein - Mycobacterium tuberculosis%3B E%3D6e-21 COG: Rv3214%3B COG0406 Phosphoglycerate mutase/fructose-2%2C6-bisphosphatase%3B E%3D6e-22 TP0168%3B COG0588 Phosphoglycerate mutase 1%3B E%3D2e-05 aq_1990%3B COG0406 Phosphoglycerate mutase/fructose-2%2C6-bisphosphatase%3B E%3D6e-05 PFAM: PF00300%3B Phosphoglycerate mutase%3B E%3D6e-19 gene gene2749 http://www.ncbi.nlm.nih.gov/gene/?term=RB4904 RB4906 RB4906 atpD atpD 2524065 2525591 + ATP synthase F0F1 subunit beta Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit gene gene2750 http://www.ncbi.nlm.nih.gov/gene/?term=RB4906 RB4908 RB4908 atpC atpC 2525588 2525983 + ATP synthase F0F1 subunit epsilon part of catalytic core of ATP synthase%3B alpha(3)beta(3)gamma(1)delta(1)epsilon(1)%3B involved in producing ATP from ADP in the presence of the proton motive force across the membrane gene gene2751 http://www.ncbi.nlm.nih.gov/gene/?term=RB4908 RB4909 RB4909 RB4909 2525999 2526283 + ATP synthase gene 1 PMID: 9425287 best DB hits: BLAST: gb:AAC38051.1%3B (AF028006) ATP synthase gene 1 [Methanosarcina%3B E%3D2e-18 gene gene2752 http://www.ncbi.nlm.nih.gov/gene/?term=RB4909 RB4910 RB4910 RB4910 2526270 2526617 + hypothetical protein PMID: 9425287 best DB hits: BLAST: gb:AAC38052.1%3B (AF028006) unknown [Methanosarcina barkeri]%3B E%3D0.49 gene gene2753 http://www.ncbi.nlm.nih.gov/gene/?term=RB4910 RB4911 RB4911 atpB atpB 2526614 2527300 + ATP synthase F0F1 subunit A Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 gene gene2754 http://www.ncbi.nlm.nih.gov/gene/?term=RB4911 RB4913 RB4913 RB4913 2527382 2527648 + ATP synthase F0F1 subunit C produces ATP from ADP in the presence of a proton gradient across the membrane%3B subunit C is part of the membrane proton channel F0 gene gene2755 http://www.ncbi.nlm.nih.gov/gene/?term=RB4913 RB4915 RB4915 atpF atpF 2527665 2528405 + ATP synthase subunit B PMID: 9425287 best DB hits: BLAST: gb:AAC38055.1%3B (AF028006) ATP synthase b subunit [Methanosarcina%3B E%3D2e-25 ddbj:BAA23684.1%3B (AB006151) proton-translocating ATPase%2C b%3B E%3D2e-05 swissprot:P21904%3B ATPF_PROMO ATP SYNTHASE B CHAIN%2C SODIUM ION%3B E%3D5e-04 COG: UU135%3B COG0711 F0F1-type ATP synthase b subunit%3B E%3D1e-04 PFAM: PF00430%3B ATP synthase B/B' CF(0)%3B E%3D6.3e-12 gene gene2756 http://www.ncbi.nlm.nih.gov/gene/?term=RB4915 RB4916 RB4916 atpA atpA 2528481 2530013 + ATP synthase F0F1 subunit alpha produces ATP from ADP in the presence of a proton gradient across the membrane%3B the alpha chain is a catalytic subunit gene gene2757 http://www.ncbi.nlm.nih.gov/gene/?term=RB4916 RB4917 RB4917 atpG atpG 2530000 2530920 + ATP synthase subunit gamma PMID: 9425287 best DB hits: BLAST: gb:AAC38058.1%3B (AF028006) ATP synthase gamma subunit C-terminus%3B E%3D7e-27 gb:AAC38057.1%3B (AF028006) ATP synthase gamma subunit N-terminus%3B E%3D1e-13 swissprot:P00837%3B ATPG_ECOLI ATP SYNTHASE GAMMA CHAIN -----%3B E%3D2e-13 COG: atpG%3B COG0224 F0F1-type ATP synthase gamma subunit%3B E%3D2e-14 PFAM: PF00231%3B ATP synthase%3B E%3D3.3e-07 gene gene2758 http://www.ncbi.nlm.nih.gov/gene/?term=RB4917 RB4918 RB4918 RB4918 2530971 2531129 - hypothetical protein gene gene2759 http://www.ncbi.nlm.nih.gov/gene/?term=RB4918 RB4919 RB4919 RB4919 2531133 2531654 + signal peptide gene gene2760 http://www.ncbi.nlm.nih.gov/gene/?term=RB4919 RB492 RB492 RB492 267633 269384 + calmodulin best DB hits: BLAST: gb:AAD34246.1%3B AF084398_1 (AF084398) calmodulin mutant SYNCAM46%3B E%3D0.002 gb:AAD34433.1%3B AF084449_1 (AF084449) calmodulin mutant SYNCAM26%3B E%3D0.002 prf:1003191A%3B calmodulin [Oryctolagus cuniculus]%3B E%3D0.002 PFAM: PF00036%3B EF hand%3B E%3D0.034 PF00395%3B S-layer homology domain%3B E%3D0.44 gene gene286 http://www.ncbi.nlm.nih.gov/gene/?term=RB492 RB4920 RB4920 RB4920 2531641 2531850 - hypothetical protein gene gene2761 http://www.ncbi.nlm.nih.gov/gene/?term=RB4920 RB4921 RB4921 RB4921 2531934 2532635 + hypothetical protein PMID: 12004073 gene gene2762 http://www.ncbi.nlm.nih.gov/gene/?term=RB4921 RB4923 RB4923 RB4923 2532667 2533638 - permease PMID: 7704254 best DB hits: BLAST: swissprot:P42243%3B YCBK_BACSU HYPOTHETICAL 34.0 KD PROTEIN IN%3B E%3D6e-13 pir:B75194%3B hypothetical protein PAB0040 - Pyrococcus abyssi (strain%3B E%3D1e-06 swissprot:O31540%3B YETK_BACSU HYPOTHETICAL 35.8 KD PROTEIN IN%3B E%3D2e-06 COG: BS_ycbK%3B COG0697 Predicted permeases%3B E%3D5e-14 PFAM: PF00892%3B Integral membrane protein DUF6%3B E%3D5.5e-10 gene gene2763 http://www.ncbi.nlm.nih.gov/gene/?term=RB4923 RB4924 RB4924 RB4924 2533635 2533763 - hypothetical protein gene gene2764 http://www.ncbi.nlm.nih.gov/gene/?term=RB4924 RB4925 RB4925 RB4925 2533826 2534719 - ribonuclease III PMID: 86039802 PMID: 97439408 best DB hits: BLAST: swissprot:Q9ZLH2%3B RNC_HELPJ RIBONUCLEASE III (RNASE III) -----%3B E%3D3e-26 pir:F64602%3B ribonuclease III - Helicobacter pylori (strain 26695)%3B E%3D3e-26 swissprot:P56118%3B RNC_HELPY RIBONUCLEASE III (RNASE III)%3B E%3D3e-26 COG: jhp0607%3B COG0571 dsRNA-specific ribonuclease%3B E%3D3e-27 PFAM: PF00636%3B RNase3 domain.%3B E%3D1.2e-26 PF00035%3B Double-stranded RNA binding mo%3B E%3D3.9e-21 gene gene2765 http://www.ncbi.nlm.nih.gov/gene/?term=RB4925 RB4927 RB4927 RB4927 2534735 2534941 + hypothetical protein gene gene2766 http://www.ncbi.nlm.nih.gov/gene/?term=RB4927 RB4928 RB4928 RB4928 2534999 2537350 + aminopeptidase PMID: 7934828 PMID: 1806041 PMID: 8665903 PMID: 2503378 best DB hits: BLAST: pir:G82759%3B hypothetical protein XF0820 [imported] - Xylella%3B E%3D5e-18 ddbj:BAA31158.1%3B (AB015725) aminopeptidase [Aeromonas caviae]%3B E%3D5e-11 ddbj:BAB07580.1%3B (AP001520) aminopeptidase [Bacillus halodurans]%3B E%3D1e-10 COG: XF0820%3B COG2234 Predicted aminopeptidases%3B E%3D5e-19 PFAM: PF02225%3B PA domain%3B E%3D0.0063 PF00595%3B PDZ domain (Also known as DHR o%3B E%3D1.1e-07 gene gene2767 http://www.ncbi.nlm.nih.gov/gene/?term=RB4928 RB4931 RB4931 RB4931 2537481 2538134 + signal peptide PMID: 12093901 gene gene2768 http://www.ncbi.nlm.nih.gov/gene/?term=RB4931 RB4933 RB4933 RB4933 2538155 2538301 + hypothetical protein gene gene2769 http://www.ncbi.nlm.nih.gov/gene/?term=RB4933 RB4934 RB4934 lpxC lpxC 2538298 2539206 + UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase zinc-dependent%3B catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis gene gene2770 http://www.ncbi.nlm.nih.gov/gene/?term=RB4934 RB4936 RB4936 lpxA lpxA 2539280 2540089 + acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis gene gene2771 http://www.ncbi.nlm.nih.gov/gene/?term=RB4936 RB4937 RB4937 RB4937 2540086 2541195 + NADH-dependent dehydrogenase PMID: 8905231 best DB hits: BLAST: pir:S76068%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D3e-23 pir:H69216%3B 3-chlorobenzoate-3%2C4-dioxygenase dyhydrogenase related%3B E%3D3e-22 pir:E75096%3B NADH-dependent dehydrogenase homolog. PAB0775 -%3B E%3D9e-16 COG: slr0338%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D3e-24 PFAM: PF02871%3B NAD/NADP octopine/nopaline deh%3B E%3D0.21 PF01113%3B Dihydrodipicolinate reductase%3B E%3D0.045 PF00547%3B Urease%2C gamma subunit%3B E%3D0.84 gene gene2772 http://www.ncbi.nlm.nih.gov/gene/?term=RB4937 RB4938 RB4938 RB4938 2541358 2541525 + signal peptide gene gene2773 http://www.ncbi.nlm.nih.gov/gene/?term=RB4938 RB4940 RB4940 RB4940 2541555 2542262 + hypothetical protein gene gene2774 http://www.ncbi.nlm.nih.gov/gene/?term=RB4940 RB4941 RB4941 RB4941 2541619 2542140 + hypothetical protein gene gene2775 http://www.ncbi.nlm.nih.gov/gene/?term=RB4941 RB4944 RB4944 ppc ppc 2542159 2544972 + phosphoenolpyruvate carboxylase PMID: 9244286 best DB hits: BLAST: pir:F75415%3B phosphoenolpyruvate carboxylase - Deinococcus%3B E%3D2e-92 swissprot:O32483%3B CAPP_RHOPA PHOSPHOENOLPYRUVATE CARBOXYLASE%3B E%3D3e-92 swissprot:P28594%3B CAPP_ANASP PHOSPHOENOLPYRUVATE CARBOXYLASE%3B E%3D4e-89 COG: DR1283%3B COG2352 Phosphoenolpyruvate carboxylase%3B E%3D2e-93 PFAM: PF00311%3B Phosphoenolpyruvate carboxylase%3B E%3D1.2e-15 gene gene2776 http://www.ncbi.nlm.nih.gov/gene/?term=RB4944 RB4945 RB4945 RB4945 2544949 2546421 - hypothetical protein gene gene2777 http://www.ncbi.nlm.nih.gov/gene/?term=RB4945 RB4949 RB4949 RB4949 2546436 2547455 + hypothetical protein gene gene2778 http://www.ncbi.nlm.nih.gov/gene/?term=RB4949 RB4951 RB4951 RB4951 2547498 2547785 + hypothetical protein gene gene2779 http://www.ncbi.nlm.nih.gov/gene/?term=RB4951 RB4954 RB4954 RB4954 2547861 2548361 + thioredoxin PMID: 9359865 PMID: 10632710 PMID: 9389475 best DB hits: BLAST: gb:AAB89512.1%3B (AE000983) conserved hypothetical protein%3B E%3D0.006 gb:AAC26855.1%3B (AF069951) 5'-adenylylsulfate reductase%3B E%3D0.069 swissprot:P80579%3B THIO_ALIAC THIOREDOXIN (TRX) ----- pdb: 1QUW%3B E%3D0.32 COG: AF1737%3B COG1331 Highly conserved protein containing a thioredoxin%3B E%3D6e-04 gene gene2780 http://www.ncbi.nlm.nih.gov/gene/?term=RB4954 RB4957 RB4957 RB4957 2548380 2548553 + hypothetical protein gene gene2781 http://www.ncbi.nlm.nih.gov/gene/?term=RB4957 RB4958 RB4958 RB4958 2548531 2549283 - adenylate cyclase PMID: 9171404 best DB hits: BLAST: ddbj:BAA14001.1%3B (D89626) adenylate cyclase [Anabaena sp.]%3B E%3D0.018 pir:S75331%3B penicillin-binding protein 1B mrcB - Synechocystis sp.%3B E%3D0.10 ddbj:BAB11326.1%3B (AB016886) gene_id:MCA23.11~~unknown protein%3B E%3D0.14 COG: slr1710%3B COG0744 Membrane carboxypeptidase (penicillin-binding%3B E%3D0.010 PFAM: PF02590%3B Uncharacterized ACR%2C COG1576%3B E%3D0.23 PF00498%3B FHA domain%3B E%3D1.6e-09 gene gene2782 http://www.ncbi.nlm.nih.gov/gene/?term=RB4958 RB4960 RB4960 RB4960 2549270 2550379 + hypothetical protein best DB hits: BLAST: ddbj:BAB07003.1%3B (AP001518) BH3284~~unknown conserved protein%3B E%3D2e-51 pir:D69999%3B conserved hypothetical protein ytqA - Bacillus subtilis%3B E%3D3e-48 gb:AAK06364.1%3B AE006455_10 (AE006455) HYPOTHETICAL PROTEIN%3B E%3D1e-46 COG: BH3284%3B COG1242 Uncharacterized FeS oxidoreductases%3B E%3D2e-52 MJ1136%3B COG1243 ELP3 component of the RNA polymerase II complex%2C%3B E%3D2e-07 BS_hemN%3B COG0635 Coproporphyrinogen III oxidase and related FeS%3B E%3D2e-05 gene gene2783 http://www.ncbi.nlm.nih.gov/gene/?term=RB4960 RB4961 RB4961 RB4961 2550408 2551148 - hypothetical protein gene gene2784 http://www.ncbi.nlm.nih.gov/gene/?term=RB4961 RB4963 RB4963 RB4963 2551241 2551417 + hypothetical protein gene gene2785 http://www.ncbi.nlm.nih.gov/gene/?term=RB4963 RB4965 RB4965 RB4965 2551466 2552083 + signal peptide gene gene2786 http://www.ncbi.nlm.nih.gov/gene/?term=RB4965 RB4966 RB4966 RB4966 2552057 2552311 - hypothetical protein gene gene2787 http://www.ncbi.nlm.nih.gov/gene/?term=RB4966 RB4967 RB4967 RB4967 2552650 2553402 - DeoR family transcriptional regulator PMID: 97000351 best DB hits: BLAST: embl:CAB90984.1%3B (AL355832) deoR-family transcriptional%3B E%3D3e-15 gb:AAD15248.1%3B (L37338) repressor [Streptomyces%3B E%3D3e-14 ddbj:BAB05608.1%3B (AP001513) BH1889~~unknown conserved protein%3B E%3D3e-10 COG: BH1889%3B COG2378 Predicted transcriptional regulator%3B E%3D3e-11 PFAM: PF00455%3B Bacterial regulatory proteins%2C deoR%3B E%3D0.0029 PF01022%3B Bacterial regulatory protein%2C arsR f%3B E%3D0.12 gene gene2788 http://www.ncbi.nlm.nih.gov/gene/?term=RB4967 RB4968 RB4968 ephA ephA 2553479 2554474 + hypothetical protein PMID: 20435850 best DB hits: BLAST: pir:B70957%3B probable ephA protein - Mycobacterium tuberculosis%3B E%3D1e-57 gb:AAG14967.1%3B AF233335_1 (AF233335) soluble epoxide hydrolase%3B E%3D7e-44 gb:AAG23251.1%3B AF311103_2 (AF311103) cytosolic epoxide hydrolase%3B E%3D8e-44 COG: Rv3617%3B COG0596 Predicted hydrolases or acyltransferases (alpha/beta%3B E%3D1e-58 BS_yfhM%3B COG0596 Predicted hydrolases or acyltransferases%3B E%3D8e-27 DR2549%3B COG0596 Predicted hydrolases or acyltransferases (alpha/beta%3B E%3D2e-23 PFAM: PF00561%3B alpha/beta hydrolase fold%3B E%3D2.5e-23 gene gene2789 http://www.ncbi.nlm.nih.gov/gene/?term=RB4968 RB4969 RB4969 RB4969 2554443 2555447 + hypothetical protein best DB hits: PFAM: PF00189%3B Ribosomal protein S3%2C C-termin%3B E%3D0.66 gene gene2790 http://www.ncbi.nlm.nih.gov/gene/?term=RB4969 RB497 RB497 RB497 269443 270549 + regulatory protein best DB hits: BLAST: pir:B71126%3B hypothetical protein PH0776 - Pyrococcus horikoshii%3B E%3D9e-66 ddbj:BAB04450.1%3B (AP001509) BH0731~~unknown conserved protein%3B E%3D1e-65 pir:C75037%3B methanol dehydrogenase regulatory protein (moxr-3)%3B E%3D2e-64 COG: PH0776%3B COG0714 MoxR-like ATPases%3B E%3D8e-67 PFAM: PF01078%3B Magnesium chelatase%2C subunit C%3B E%3D1.2e-08 gene gene287 http://www.ncbi.nlm.nih.gov/gene/?term=RB497 RB4971 RB4971 RB4971 2555106 2557070 - hypothetical protein PMID: 97000351 best DB hits: BLAST: embl:CAB71254.1%3B (AL138598) hypothetical protein SC1A2.16c.%3B E%3D3e-16 embl:CAB95448.1%3B (AL359782) hypothetical protein%2C CHR1.152%3B E%3D9e-08 gene gene2791 http://www.ncbi.nlm.nih.gov/gene/?term=RB4971 RB4972 RB4972 RB4972 2557220 2557390 + hypothetical protein gene gene2792 http://www.ncbi.nlm.nih.gov/gene/?term=RB4972 RB4973 RB4973 RB4973 2557462 2557839 - hypothetical protein gene gene2793 http://www.ncbi.nlm.nih.gov/gene/?term=RB4973 RB4974 RB4974 RB4974 2557884 2558144 - hypothetical protein gene gene2794 http://www.ncbi.nlm.nih.gov/gene/?term=RB4974 RB4975 RB4975 RB4975 2557936 2558115 + hypothetical protein gene gene2795 http://www.ncbi.nlm.nih.gov/gene/?term=RB4975 RB4977 RB4977 RB4977 2558245 2559300 + hypothetical protein gene gene2796 http://www.ncbi.nlm.nih.gov/gene/?term=RB4977 RB498 RB498 RB498 270596 271717 + hypothetical protein PMID: 9634230 best DB hits: BLAST: swissprot:P71761%3B YE80_MYCTU HYPOTHETICAL 34.3 KDA PROTEIN RV1480%3B E%3D7e-17 pir:G70121%3B conserved hypothetical protein BB0175 - Lyme disease%3B E%3D5e-12 pir:D83106%3B hypothetical protein PA4323 [imported] - Pseudomonas%3B E%3D2e-09 COG: Rv1480%3B COG1721 Uncharacterized ACR%3B E%3D7e-18 PFAM: PF01882%3B Protein of unknown function DU%3B E%3D1.3e-17 gene gene288 http://www.ncbi.nlm.nih.gov/gene/?term=RB498 RB4980 RB4980 RB4980 2559335 2559508 - hypothetical protein gene gene2797 http://www.ncbi.nlm.nih.gov/gene/?term=RB4980 RB4981 RB4981 RB4981 2559627 2560415 + 3-oxoacyl-ACP reductase PMID: 8759840 best DB hits: BLAST: pir:E70027%3B probable 3-oxoacyl-[acyl-carrier-protein] reductase (EC%3B E%3D3e-75 pir:H83476%3B probable short-chain dehydrogenase PA1344 [imported] -%3B E%3D2e-60 pir:H70046%3B probable 3-oxoacyl-[acyl-carrier-protein] reductase (EC%3B E%3D1e-53 COG: BS_yvaG%3B COG1028 Dehydrogenases with different specificities%3B E%3D3e-76 PA1344%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D2e-61 BS_yvrD%3B COG1028 Dehydrogenases with different specificities%3B E%3D1e-54 PFAM: PF00106%3B short chain dehydrogenase%3B E%3D5.1e-48 PF00678%3B Short chain dehydrogenase/reduct%3B E%3D3.4e-06 gene gene2798 http://www.ncbi.nlm.nih.gov/gene/?term=RB4981 RB4982 RB4982 RB4982 2560457 2561305 + oxidoreductase best DB hits: BLAST: ddbj:BAB04024.1%3B (AP001508) BH0305~~unknown conserved protein in%3B E%3D1e-29 gb:AAG59409.1%3B AE005653_10 (AE005653) oxidoreductase%3B E%3D1e-26 swissprot:P39315%3B YTFG_ECOLI HYPOTHETICAL 29.7 KD PROTEIN IN%3B E%3D3e-26 COG: BH0305%3B COG0702 Predicted nucleoside-diphosphate-sugar epimerases%3B E%3D1e-30 PFAM: PF01073%3B 3-beta hydroxysteroid dehydrogenase%3B E%3D0.1 gene gene2799 http://www.ncbi.nlm.nih.gov/gene/?term=RB4982 RB4983 RB4983 RB4983 2561302 2561424 + hypothetical protein gene gene2800 http://www.ncbi.nlm.nih.gov/gene/?term=RB4983 RB4984 RB4984 RB4984 2561395 2562546 - succinate dehydrogenase subunit PMID: 11016950 best DB hits: BLAST: pir:F82096%3B conserved hypothetical protein VC2282 [imported] -%3B E%3D7e-56 pir:T44958%3B hypothetical protein [imported] - Natronomonas pharaonis%3B E%3D6e-55 gb:AAG20249.1%3B (AE005100) succinate dehydrogenase subunit%3B Sdh%3B E%3D3e-21 COG: VC2282%3B COG2988 Succinylglutamate desuccinylase%3B E%3D7e-57 gene gene2801 http://www.ncbi.nlm.nih.gov/gene/?term=RB4984 RB4985 RB4985 RB4985 2562613 2562822 - hypothetical protein gene gene2802 http://www.ncbi.nlm.nih.gov/gene/?term=RB4985 RB4987 RB4987 RB4987 2563201 2563728 + signal peptide gene gene2803 http://www.ncbi.nlm.nih.gov/gene/?term=RB4987 RB4988 RB4988 RB4988 2563689 2563886 + signal peptide gene gene2804 http://www.ncbi.nlm.nih.gov/gene/?term=RB4988 RB4989 RB4989 RB4989 2563777 2565093 + Ta11-like non-LTR retroelement protein-like PMID: 9872454 best DB hits: BLAST: ddbj:BAB08360.1%3B (AB015475) Ta11-like non-LTR retroelement%3B E%3D0.40 PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.014 gene gene2805 http://www.ncbi.nlm.nih.gov/gene/?term=RB4989 RB4990 RB4990 RB4990 2564029 2565093 + signal peptide best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.014 gene gene2806 http://www.ncbi.nlm.nih.gov/gene/?term=RB4990 RB4991 RB4991 RB4991 2565084 2565503 + signal peptide gene gene2807 http://www.ncbi.nlm.nih.gov/gene/?term=RB4991 RB4992 RB4992 RB4992 2565522 2566862 + signal peptide gene gene2808 http://www.ncbi.nlm.nih.gov/gene/?term=RB4992 RB4993 RB4993 RB4993 2566796 2567881 - signal peptide PMID: 11679669 gene gene2809 http://www.ncbi.nlm.nih.gov/gene/?term=RB4993 RB4994 RB4994 RB4994 2567983 2569284 - osmolarity sensor protein envZ PMID: 8063417 best DB hits: BLAST: pir:C83500%3B probable two-component sensor PA1158 [imported] -%3B E%3D6e-33 gb:AAG56596.1%3B AE005384_6 (AE005384) sensor histidine protein%3B E%3D2e-27 swissprot:P18392%3B RSTB_ECOLI SENSOR PROTEIN RSTB ----- pir:%3B E%3D2e-27 COG: PA1158%3B COG0642 Sensory transduction histidine kinases%3B E%3D6e-34 PFAM: PF00672%3B HAMP domain%3B E%3D8.4e-08 PF00512%3B His Kinase A (phosphoacceptor) doma%3B E%3D1.1e-15 PF02518%3B Histidine kinase-%2C DNA gyrase B-%2C p%3B E%3D1.2e-31 gene gene2810 http://www.ncbi.nlm.nih.gov/gene/?term=RB4994 RB4995 RB4995 ribH ribH 2569371 2569838 - 6%2C7-dimethyl-8-ribityllumazine synthase PMID: 8969176 PMID: 11237620 best DB hits: BLAST: pir:H83140%3B 6%2C7-dimethyl-8-ribityllumazine synthase PA4053%3B E%3D8e-21 pir:C82741%3B 6%2C7-dimethyl-8-ribityllumazine synthase XF0954%3B E%3D2e-20 gb:AAK02815.1%3B (AE006110) RibH [Pasteurella multocida]%3B E%3D4e-19 COG: PA4053%3B COG0054 Riboflavin synthase beta-chain%3B E%3D7e-22 PFAM: PF00885%3B 6%2C7-dimethyl-8-ribityllumazine%3B E%3D1.3e-34 gene gene2811 http://www.ncbi.nlm.nih.gov/gene/?term=RB4995 RB4997 RB4997 rho rho 2569897 2571441 - transcription termination factor Rho An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes gene gene2812 http://www.ncbi.nlm.nih.gov/gene/?term=RB4997 RB4998 RB4998 alkA alkA 2571627 2572250 - DNA-3-methyladenine glycosidase PMID: 8921872 PMID: 91092284 PMID: 89024568 best DB hits: BLAST: pir:T08409%3B DNA-3-methyladenine glycosidase I homolog F18B3.160 -%3B E%3D9e-20 gb:AAD39589.1%3B AC007858_3 (AC007858) This gene is a member of PF%3B E%3D2e-19 ddbj:BAB05468.1%3B (AP001513) DNA-3-methyladenine glycosidase%3B E%3D4e-19 COG: BH1749%3B COG0122 3-Methyladenine DNA glycosylase%3B E%3D4e-20 gene gene2813 http://www.ncbi.nlm.nih.gov/gene/?term=RB4998 RB5 RB5 RB5 399 1514 - signal peptide gene gene2 http://www.ncbi.nlm.nih.gov/gene/?term=RB5 RB50 RB50 RB50 22495 23190 - hypothetical protein gene gene29 http://www.ncbi.nlm.nih.gov/gene/?term=RB50 RB500 RB500 RB500 271714 274110 + signal peptide gene gene289 http://www.ncbi.nlm.nih.gov/gene/?term=RB500 RB5001 RB5001 RB5001 2572354 2572665 + hypothetical protein gene gene2814 http://www.ncbi.nlm.nih.gov/gene/?term=RB5001 RB5003 RB5003 RB5003 2572662 2574158 + high affinity ammonium transporter PMID: 8062823 PMID: 96214991 PMID: 8062822 best DB hits: BLAST: swissprot:P72935%3B YA17_SYNY3 AMMONIUM TRANSPORTER SLL1017%3B E%3D1e-70 gb:AAF15904.1%3B AF208160_1 (AF208160) high affinity ammonium%3B E%3D1e-56 swissprot:P54147%3B Y108_SYNY3 AMMONIUM TRANSPORTER SLL0108%3B E%3D1e-55 COG: sll1017%3B COG0004 Ammonia permeases%3B E%3D1e-71 PFAM: PF00909%3B Ammonium Transporter Family%3B E%3D7.6e-157 gene gene2815 http://www.ncbi.nlm.nih.gov/gene/?term=RB5003 RB5005 RB5005 glnB glnB 2574383 2574859 + nitrogen regulatory protein P-II PMID: 1702507 best DB hits: BLAST: pir:A72380%3B nitrogen regulatory protein P-II - Thermotoga maritima%3B E%3D4e-21 swissprot:P21193%3B GLNB_AZOBR NITROGEN REGULATORY PROTEIN P-II%3B E%3D8e-17 embl:CAA63238.1%3B (X92496) PII-like protein Pz [Azospirillum%3B E%3D1e-16 COG: TM0403%3B COG0347 Nitrogen regulatory protein PII%3B E%3D4e-22 PFAM: PF00543%3B Nitrogen regulatory protein P-II%3B E%3D2.7e-27 gene gene2816 http://www.ncbi.nlm.nih.gov/gene/?term=RB5005 RB5007 RB5007 axeA axeA 2574916 2575812 + acetyl xylan esterase AxeA PMID: 10473406 PMID: 9274014 best DB hits: BLAST: pir:T05414%3B protein kinase homolog F28A23.20 - Arabidopsis thaliana%3B E%3D9e-17 gb:AAG36766.1%3B AF180369_1 (AF180369) acetyl xylan esterase AxeA%3B E%3D3e-14 pir:T47558%3B hypothetical protein F8J2.180 - Arabidopsis thaliana%3B E%3D5e-13 gene gene2817 http://www.ncbi.nlm.nih.gov/gene/?term=RB5007 RB5008 RB5008 RB5008 2575757 2576944 + signal peptide best DB hits: PFAM: PF00150%3B Cellulase (glycosyl hydrolase famil%3B E%3D0.26 gene gene2818 http://www.ncbi.nlm.nih.gov/gene/?term=RB5008 RB5010 RB5010 RB5010 2576877 2577161 - 50S ribosomal protein L28 gene gene2819 http://www.ncbi.nlm.nih.gov/gene/?term=RB5010 RB5011 RB5011 RB5011 2577047 2578327 + lichenase PMID: 9324248 best DB hits: BLAST: gb:AAD04192.1%3B (U63813) lichenase [Orpinomyces sp. PC-2]%3B E%3D0.16 pir:A36910%3B xylanase%2C beta(1%2C3-1%2C4)-glucanase - Ruminococcus%3B E%3D0.25 swissprot:Q53317%3B XYND_RUMFL XYLANASEBETA-GLUCANASE PRECURSOR%3B E%3D0.25 gene gene2820 http://www.ncbi.nlm.nih.gov/gene/?term=RB5011 RB5012 RB5012 RB5012 2578275 2578493 + hypothetical protein gene gene2821 http://www.ncbi.nlm.nih.gov/gene/?term=RB5012 RB5015 RB5015 rimI rimI 2578474 2579178 - ribosomal-protein-alanine acetyltransferase PMID: 2828880 best DB hits: BLAST: pir:B70351%3B ribosomal-protein-alanine acetyltransferase - Aquifex%3B E%3D1e-11 pir:G69233%3B N-terminal acetyltransferase complex%2C subunit ARD1 -%3B E%3D3e-10 pir:S56597%3B peptide N-acetyltransferase (EC 2.3.1.-) rimI -%3B E%3D2e-09 COG: aq_567%3B COG0456 Acetyltransferases%3B E%3D1e-12 Ta0455%3B COG0454 Histone acetyltransferase HPA2 and related%3B E%3D2e-05 VC0657%3B COG0456 Acetyltransferases%3B E%3D2e-05 PFAM: PF00583%3B Acetyltransferase (GNAT) family%3B E%3D6e-23 gene gene2822 http://www.ncbi.nlm.nih.gov/gene/?term=RB5015 RB5016 RB5016 RB5016 2579226 2579933 - beta-1%2C4-galactosyltransferase waaX PMID: 9792656 PMID: 9791168 best DB hits: BLAST: gb:AAC69683.1%3B (AF019747) beta1%2C4-galactosyltransferase%3B E%3D0.76 gene gene2823 http://www.ncbi.nlm.nih.gov/gene/?term=RB5016 RB5019 RB5019 RB5019 2579923 2581296 - hypothetical protein best DB hits: PFAM: PF00535%3B Glycosyl transferase%3B E%3D0.00033 gene gene2824 http://www.ncbi.nlm.nih.gov/gene/?term=RB5019 RB502 RB502 RB502 274107 276965 + signal peptide PMID: 11474104 gene gene290 http://www.ncbi.nlm.nih.gov/gene/?term=RB502 RB5022 RB5022 RB5022 2581306 2581773 - hypothetical protein gene gene2825 http://www.ncbi.nlm.nih.gov/gene/?term=RB5022 RB5025 RB5025 RB5025 2581935 2583452 + cysteine proteinase PMID: 11466286 best DB hits: BLAST: pir:T08153%3B cysteine proteinase (EC 3.4.22.-) - Volvox carteri f.%3B E%3D0.003 pir:H71456%3B probable pyrolysin (EC 3.4.-.-) homolog PH0310%3B E%3D0.021 pir:C75015%3B probable pyrolysin (EC 3.4.-.-) homolog PAB1252%3B E%3D0.024 PFAM: PF00112%3B Papain family cysteine protease%3B E%3D0.071 gene gene2826 http://www.ncbi.nlm.nih.gov/gene/?term=RB5025 RB5028 RB5028 RB5028 2583453 2588894 - serine/threonine-protein kinase pknB PMID: 8969512 best DB hits: BLAST: pir:H69878%3B probable protein kinase (EC 2.7.1.-) yloP - Bacillus%3B E%3D6e-44 swissprot:P54744%3B PKNB_MYCLE SERINETHREONINE-PROTEIN%3B E%3D1e-37 swissprot:P71584%3B PKNB_MYCTU SERINETHREONINE-PROTEIN%3B E%3D3e-37 COG: BS_yloP_1%3B COG0515 Serine/threonine protein kinases%3B E%3D6e-45 PFAM: PF00069%3B Protein kinase domain%3B E%3D1.5e-45 PF00004%3B ATPase associated with vari%3B E%3D0.14 PF00005%3B ABC transporter%3B E%3D0.082 gene gene2827 http://www.ncbi.nlm.nih.gov/gene/?term=RB5028 RB5029 RB5029 RB5029 2589034 2589744 - methyltransferase best DB hits: BLAST: embl:CAC11769.1%3B (AL445064) conserved hypothetical protein%3B E%3D9e-08 pir:F70426%3B conserved hypothetical protein aq_1457 - Aquifex%3B E%3D4e-07 embl:CAB88946.1%3B (AL353863) methyltransferase%3B E%3D7e-07 COG: Ta0630%3B COG0500 SAM-dependent methyltransferases%3B E%3D9e-09 VC0083%3B COG2226 Methylase involved in ubiquinone/menaquinone%3B E%3D2e-05 aq_262%3B COG0500 SAM-dependent methyltransferases%3B E%3D1e-04 gene gene2828 http://www.ncbi.nlm.nih.gov/gene/?term=RB5029 RB5031 RB5031 RB5031 2589750 2590541 - signal peptide best DB hits: BLAST: pir:T34929%3B hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces%3B E%3D0.005 gene gene2829 http://www.ncbi.nlm.nih.gov/gene/?term=RB5031 RB5034 RB5034 RB5034 2590570 2590731 + hypothetical protein gene gene2830 http://www.ncbi.nlm.nih.gov/gene/?term=RB5034 RB5035 RB5035 RB5035 2590674 2590973 - hypothetical protein gene gene2831 http://www.ncbi.nlm.nih.gov/gene/?term=RB5035 RB5036 RB5036 RB5036 2590789 2590959 + hypothetical protein gene gene2832 http://www.ncbi.nlm.nih.gov/gene/?term=RB5036 RB5038 RB5038 maoC maoC 2590997 2591572 + monoamine oxidase regulatory protein PMID: 9389475 best DB hits: BLAST: gb:AAB91035.1%3B (AE001092) monoamine oxidase regulatory protein%2C%3B E%3D0.026 embl:CAC23410.1%3B (AL512967) hypothetical monoamine oxidase%3B E%3D0.056 gb:AAB88943.1%3B (AE000944) maoC protein (maoC) [Archaeoglobus%3B E%3D0.095 COG: AF0198%3B COG2030 Monoamine oxidase%3B E%3D0.002 PFAM: PF01575%3B MaoC like domain%3B E%3D5.8e-07 gene gene2833 http://www.ncbi.nlm.nih.gov/gene/?term=RB5038 RB5039 RB5039 betA betA 2591619 2593115 - GMC oxidoreductase PMID: 92177421 best DB hits: BLAST: pir:C75453%3B GMC oxidoreductase - Deinococcus radiodurans (strain R1)%3B E%3D9e-35 swissprot:Q00593%3B ALKJ_PSEOL ALCOHOL DEHYDROGENASE [ACCEPTOR]%3B E%3D3e-28 embl:CAB51051.1%3B (AJ233397) alcohol dehydrogenase [Pseudomonas%3B E%3D3e-25 COG: DR0965%3B COG2303 Choline dehydrogenase and related flavoproteins%3B E%3D9e-36 PFAM: PF01494%3B FAD binding domain%3B E%3D0.085 PF00732%3B GMC oxidoreductases%3B E%3D2.3e-09 PF01583%3B Adenylylsulfate kinase%3B E%3D0.85 gene gene2834 http://www.ncbi.nlm.nih.gov/gene/?term=RB5039 RB5042 RB5042 RB5042 2593112 2593915 - glyoxalase PMID: 9371463 best DB hits: BLAST: pir:D69036%3B conserved hypothetical protein MTH1267 -%3B E%3D2e-14 pir:B75083%3B probable hydroxyacylglutathione hydrolase (EC 3.1.2.6)%3B E%3D5e-10 pir:F71229%3B hypothetical protein PH0096 - Pyrococcus horikoshii%3B E%3D6e-07 COG: MTH1267%3B COG0491 Zn-dependent hydrolases%2C including glyoxylases%3B E%3D1e-15 PFAM: PF00753%3B Metallo-beta-lactamase superfamil%3B E%3D1.5e-30 gene gene2835 http://www.ncbi.nlm.nih.gov/gene/?term=RB5042 RB5043 RB5043 RB5043 2593842 2595677 + Na+/glutamate symporter PMID: 8905231 best DB hits: BLAST: pir:S76683%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D7e-25 COG: slr0625%3B COG0786 Na+/glutamate symporter%3B E%3D7e-26 gene gene2836 http://www.ncbi.nlm.nih.gov/gene/?term=RB5043 RB505 RB505 RB505 276881 281737 + hypothetical protein PMID: 11403381 best DB hits: BLAST: embl:CAC28360.1%3B (AJ306290) myosin heavy chain [Toxocara canis]%3B E%3D0.054 gb:AAD29950.1%3B (AF111784) myosin heavy chain IIa [Homo sapiens]%3B E%3D0.19 gene gene291 http://www.ncbi.nlm.nih.gov/gene/?term=RB505 RB5050 RB5050 RB5050 2595813 2597426 + amidophosphoribosyltransferase PMID: 9371463 best DB hits: BLAST: swissprot:O26742%3B PUR1_METTH AMIDOPHOSPHORIBOSYLTRANSFERASE%3B E%3D6e-54 gb:AAG19793.1%3B (AE005064) amidophosphoribosyl-pyrophosphate%3B E%3D2e-53 gb:AAB90366.1%3B (AE001044) amidophosphoribosyltransferase (purF)%3B E%3D2e-52 COG: MTH646%3B COG0034 Glutamine phosphoribosylpyrophosphate%3B E%3D5e-55 purF%3B COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase%3B E%3D5e-37 TM1247%3B COG0034 Glutamine phosphoribosylpyrophosphate%3B E%3D2e-36 PFAM: PF00310%3B Glutamine amidotransferases c%3B E%3D1.8e-22 PF00156%3B Phosphoribosyl transferase do%3B E%3D3.2e-08 gene gene2837 http://www.ncbi.nlm.nih.gov/gene/?term=RB5050 RB5051 RB5051 RB5051 2597495 2598625 - thioredoxin reductase PMID: 10086841 best DB hits: BLAST: ddbj:BAB05342.1%3B (AP001512) BH1623~~unknown conserved protein%3B E%3D9e-40 swissprot:P50736%3B YPDA_BACSU HYPOTHETICAL 36.3 KD PROTEIN IN%3B E%3D1e-38 pir:B75252%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D5e-25 COG: BH1623%3B COG0492 Thioredoxin reductase/alkyl hydroperoxide reductase%3B E%3D9e-41 BH3677%3B COG2072 Predicted flavoprotein involved in K+ transport%3B E%3D2e-06 BS_yumC%3B COG0492 Thioredoxin reductase/alkyl hydroperoxide reductase%3B E%3D4e-05 PFAM: PF01494%3B FAD binding domain%3B E%3D0.0024 PF01266%3B D-amino acid oxidase%3B E%3D0.43 PF00070%3B Pyridine nucleotide-disulphide%3B E%3D3.5e-15 gene gene2838 http://www.ncbi.nlm.nih.gov/gene/?term=RB5051 RB5052 RB5052 RB5052 2598590 2598760 + hypothetical protein gene gene2839 http://www.ncbi.nlm.nih.gov/gene/?term=RB5052 RB5053 RB5053 RB5053 2598772 2599761 + hypothetical protein PMID: 8973323 best DB hits: BLAST: swissprot:P54724%3B YFIH_BACSU HYPOTHETICAL 34.8 KD PROTEIN IN GLVBC%3B E%3D2e-09 pir:T34928%3B hypothetical protein SC3F9.06 SC3F9.06 - Streptomyces%3B E%3D2e-09 ddbj:BAB04968.1%3B (AP001511) BH1249~~unknown conserved protein%3B E%3D0.001 COG: BH2317%3B COG1082 Predicted endonucleases%3B E%3D0.006 gene gene2840 http://www.ncbi.nlm.nih.gov/gene/?term=RB5053 RB5054 RB5054 RB5054 2599786 2600100 + hypothetical protein gene gene2841 http://www.ncbi.nlm.nih.gov/gene/?term=RB5054 RB5055 RB5055 uup uup 2600094 2601971 - ABC transporter ATP-binding protein PMID: 91035372 PMID: 88240299 best DB hits: BLAST: pir:B82536%3B ABC transporter ATP-binding protein XF2617 [imported] -%3B E%3D1e-130 swissprot:Q57242%3B UUP1_HAEIN ABC TRANSPORTER ATP-BINDING PROTEIN%3B E%3D1e-130 gb:AAK02961.1%3B (AE006126) Uup1 [Pasteurella multocida]%3B E%3D1e-129 COG: XF2617%3B COG0488 ATPase components of ABC transporters with%3B E%3D1e-131 uup%3B COG0488 ATPase components of ABC transporters with duplicated%3B E%3D1e-127 VC1486%3B COG0488 ATPase components of ABC transporters with%3B E%3D1e-126 PFAM: PF00006%3B ATP synthase alpha/beta famil%3B E%3D0.076 PF00005%3B ABC transporter%3B E%3D1.9e-51 PF01202%3B Shikimate kinase%3B E%3D0.76 gene gene2842 http://www.ncbi.nlm.nih.gov/gene/?term=RB5055 RB5056 RB5056 RB5056 2601968 2603071 - ABC transporter ATP-binding protein PMID: 10567266 best DB hits: BLAST: pir:S77512%3B ABC-type transport protein slr1901 - Synechocystis sp.%3B E%3D3e-67 pir:F75377%3B ABC transporter ATP-binding protein - Deinococcus%3B E%3D6e-67 pir:G75548%3B ABC transporter ATP-binding protein - Deinococcus%3B E%3D1e-50 COG: slr1901%3B COG1131 ABC-type multidrug transport system%2C ATPase%3B E%3D3e-68 BH1054_2%3B COG0842 Permease component of an ABC-transporter%3B E%3D8e-31 PH0820%3B COG1131 ABC-type multidrug transport system%2C ATPase%3B E%3D1e-30 PFAM: PF00448%3B SRP54-type protein%2C GTPase do%3B E%3D0.012 PF02223%3B Thymidylate kinase%3B E%3D0.13 PF00005%3B ABC transporter%3B E%3D1.3e-44 gene gene2843 http://www.ncbi.nlm.nih.gov/gene/?term=RB5056 RB5057 RB5057 RB5057 2603120 2604748 - hypothetical protein PMID: 9384377 best DB hits: BLAST: pir:F69772%3B hypothetical protein ydbT - Bacillus subtilis -----%3B E%3D6e-14 ddbj:BAB05440.1%3B (AP001512) BH1721~~unknown conserved protein%3B E%3D7e-13 embl:CAA76218.1%3B (Y16431) hypothetical protein [Staphylococcus%3B E%3D9e-09 COG: BS_ydbS%3B COG3402 Uncharacterized protein%3B E%3D4e-07 gene gene2844 http://www.ncbi.nlm.nih.gov/gene/?term=RB5057 RB5060 RB5060 RB5060 2604745 2605338 - hypothetical protein PMID: 9384377 best DB hits: BLAST: pir:E69772%3B hypothetical protein ydbS - Bacillus subtilis -----%3B E%3D7e-11 ddbj:BAB05439.1%3B (AP001512) BH1720~~unknown conserved protein%3B E%3D6e-07 pir:T36081%3B probable integral membrane protein - Streptomyces%3B E%3D6e-06 COG: BS_ydbS%3B COG3402 Uncharacterized protein%3B E%3D7e-12 gene gene2845 http://www.ncbi.nlm.nih.gov/gene/?term=RB5060 RB5061 RB5061 RB5061 2605376 2605561 - hypothetical protein gene gene2846 http://www.ncbi.nlm.nih.gov/gene/?term=RB5061 RB5062 RB5062 RB5062 2605551 2605784 - hypothetical protein gene gene2847 http://www.ncbi.nlm.nih.gov/gene/?term=RB5062 RB5064 RB5064 RB5064 2605707 2607653 + signal peptide gene gene2848 http://www.ncbi.nlm.nih.gov/gene/?term=RB5064 RB5066 RB5066 RB5066 2607663 2609054 + hypothetical protein best DB hits: BLAST: gb:AAF53435.1%3B (AE003646) ck gene product [Drosophila melanogaster]%3B E%3D0.86 gene gene2849 http://www.ncbi.nlm.nih.gov/gene/?term=RB5066 RB5067 RB5067 RB5067 2609147 2609287 - hypothetical protein gene gene2850 http://www.ncbi.nlm.nih.gov/gene/?term=RB5067 RB5068 RB5068 RB5068 2609272 2609433 - hypothetical protein gene gene2851 http://www.ncbi.nlm.nih.gov/gene/?term=RB5068 RB5069 RB5069 RB5069 2609378 2609575 - hypothetical protein gene gene2852 http://www.ncbi.nlm.nih.gov/gene/?term=RB5069 RB5071 RB5071 RB5071 2609627 2610535 - hypothetical protein best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.0048 gene gene2853 http://www.ncbi.nlm.nih.gov/gene/?term=RB5071 RB5073 RB5073 RB5073 2610521 2610739 + hypothetical protein gene gene2854 http://www.ncbi.nlm.nih.gov/gene/?term=RB5073 RB5074 RB5074 RB5074 2610788 2612038 - signal peptide gene gene2855 http://www.ncbi.nlm.nih.gov/gene/?term=RB5074 RB5076 RB5076 RB5076 2612164 2612505 - hypothetical protein gene gene2856 http://www.ncbi.nlm.nih.gov/gene/?term=RB5076 RB5078 RB5078 RB5078 2612512 2613972 - hypothetical protein gene gene2857 http://www.ncbi.nlm.nih.gov/gene/?term=RB5078 RB5081 RB5081 RB5081 2613920 2614513 - ECF-like sigma factor SigE PMID: 89024591 PMID: 94329558 best DB hits: BLAST: gb:AAD31513.1%3B AF143504_1 (AF143504) ECF-like sigma factor SigE%3B E%3D5e-07 gb:AAG01453.1%3B AF282857_1 (AF282857) HrpL [Pantoea stewartii%3B E%3D3e-06 gb:AAF76211.1%3B AF272053_1 (AF272053) HrpL [Erwinia herbicola pv.%3B E%3D5e-06 COG: Rv3223c%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D6e-06 PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D3.5e-05 gene gene2858 http://www.ncbi.nlm.nih.gov/gene/?term=RB5081 RB5083 RB5083 RB5083 2614510 2615529 - signal peptide gene gene2859 http://www.ncbi.nlm.nih.gov/gene/?term=RB5083 RB5084 RB5084 RB5084 2615529 2617379 - hypothetical protein PMID: 11997336 best DB hits: BLAST: gb:AAA65701.1%3B (U12424) mitochondrial glycerol-3-phosphate%3B E%3D0.004 pir:G02093%3B glycerol-3-phosphate dehydrogenase - human ----- gb:%3B E%3D0.004 gb:AAB50200.1%3B (U79250) glycerol-3-phosphate dehydrogenase [Homo%3B E%3D0.004 COG: AF0273%3B COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases%3B E%3D0.001 PFAM: PF01224%3B FAD-dependent glycerol-3-phospha%3B E%3D3e-05 PF01134%3B Glucose inhibited division prote%3B E%3D0.029 PF00070%3B Pyridine nucleotide-disulphide o%3B E%3D0.00038 gene gene2860 http://www.ncbi.nlm.nih.gov/gene/?term=RB5084 RB5086 RB5086 RB5086 2616273 2616728 + signal peptide gene gene2861 http://www.ncbi.nlm.nih.gov/gene/?term=RB5086 RB5088 RB5088 RB5088 2617442 2617615 - hypothetical protein gene gene2862 http://www.ncbi.nlm.nih.gov/gene/?term=RB5088 RB5089 RB5089 RB5089 2617584 2618774 + signal peptide best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene2863 http://www.ncbi.nlm.nih.gov/gene/?term=RB5089 RB5092 RB5092 RB5092 2618771 2618950 + signal peptide gene gene2864 http://www.ncbi.nlm.nih.gov/gene/?term=RB5092 RB5093 RB5093 RB5093 2619010 2619213 + hypothetical protein gene gene2865 http://www.ncbi.nlm.nih.gov/gene/?term=RB5093 RB5095 RB5095 RB5095 2619271 2619450 - hypothetical protein gene gene2866 http://www.ncbi.nlm.nih.gov/gene/?term=RB5095 RB5096 RB5096 RB5096 2619419 2619643 + hypothetical protein gene gene2867 http://www.ncbi.nlm.nih.gov/gene/?term=RB5096 RB5097 RB5097 RB5097 2619601 2620260 - endonuclease III PMID: 7559510 best DB hits: BLAST: ddbj:BAA90651.1%3B (AB003153) End3 [Paenibacillus polymyxa]%3B E%3D3e-28 pir:C71482%3B probable endonuclease III - Chlamydia trachomatis%3B E%3D3e-28 pir:B75537%3B endonuclease III - Deinococcus radiodurans (strain R1)%3B E%3D7e-28 COG: CT697%3B COG0177 Predicted EndoIII-related endonuclease%3B E%3D3e-29 PFAM: PF00730%3B HhH-GPD superfamily base excision DN%3B E%3D1.6e-61 gene gene2868 http://www.ncbi.nlm.nih.gov/gene/?term=RB5097 RB5098 RB5098 RB5098 2620293 2621267 - serine acetyltransferase%2C plasmid PMID: 7603442 best DB hits: BLAST: swissprot:Q59967%3B SRPH_SYNP7 SERINE ACETYLTRANSFERASE%2C PLASMID%3B E%3D7e-55 ddbj:BAA82868.1%3B (AB023954) serine acetyltransferase [Entamoeba%3B E%3D3e-35 ddbj:BAA82870.1%3B (AB023956) serine acetyltransferase 2 [Entamoeba%3B E%3D8e-34 COG: BH0110%3B COG1045 Serine acetyltransferase%3B E%3D3e-30 BS_ykuQ%3B COG2171 Tetrahydrodipicolinate N-succinyltransferase%3B E%3D2e-04 wcaB%3B COG1045 Serine acetyltransferase%3B E%3D0.002 PFAM: PF00132%3B Bacterial transferase hexapeptide (f%3B E%3D0.078 gene gene2869 http://www.ncbi.nlm.nih.gov/gene/?term=RB5098 RB510 RB510 RB510 281746 282996 + signal peptide gene gene292 http://www.ncbi.nlm.nih.gov/gene/?term=RB510 RB5100 RB5100 RB5100 2621375 2621890 - hypothetical protein gene gene2870 http://www.ncbi.nlm.nih.gov/gene/?term=RB5100 RB5101 RB5101 RB5101 2621891 2622034 + hypothetical protein gene gene2871 http://www.ncbi.nlm.nih.gov/gene/?term=RB5101 RB5102 RB5102 RB5102 2622000 2622248 - hypothetical protein gene gene2872 http://www.ncbi.nlm.nih.gov/gene/?term=RB5102 RB5103 RB5103 RB5103 2622260 2623318 + hypothetical protein gene gene2873 http://www.ncbi.nlm.nih.gov/gene/?term=RB5103 RB5107 RB5107 RB5107 2623431 2623676 + hypothetical protein gene gene2874 http://www.ncbi.nlm.nih.gov/gene/?term=RB5107 RB5108 RB5108 RB5108 2623643 2623804 + hypothetical protein gene gene2875 http://www.ncbi.nlm.nih.gov/gene/?term=RB5108 RB5109 RB5109 RB5109 2623683 2623973 + hypothetical protein gene gene2876 http://www.ncbi.nlm.nih.gov/gene/?term=RB5109 RB5110 RB5110 RB5110 2623792 2623992 + hypothetical protein gene gene2877 http://www.ncbi.nlm.nih.gov/gene/?term=RB5110 RB5111 RB5111 RB5111 2624056 2624691 - TetR family transcriptional regulator best DB hits: BLAST: pir:E82203%3B transcriptional regulator TetR family VC1408 [imported] -%3B E%3D1e-10 pir:F82161%3B transcriptional regulator TetR family VC1746 [imported] -%3B E%3D4e-10 pir:C83186%3B probable transcriptional regulator PA3678 [imported] -%3B E%3D9e-08 COG: VC1408%3B COG1309 Transcriptional regulator%3B E%3D1e-11 PFAM: PF00440%3B Bacterial regulatory proteins%2C tetR%3B E%3D2.4e-17 gene gene2878 http://www.ncbi.nlm.nih.gov/gene/?term=RB5111 RB5114 RB5114 RB5114 2624936 2625052 - hypothetical protein gene gene2879 http://www.ncbi.nlm.nih.gov/gene/?term=RB5114 RB5116 RB5116 RB5116 2625071 2626804 + membrane-fusion protein PMID: 8407802 best DB hits: BLAST: pir:F64826%3B probable membrane protein b0878 - Escherichia coli%3B E%3D4e-05 swissprot:P75830%3B YBJY_ECOLI HYPOTHETICAL 41.7 KDA PROTEIN IN%3B E%3D4e-05 gb:AAG55260.1%3B AE005269_4 (AE005269) membrane protein%3B E%3D7e-05 COG: ybjY%3B COG0845 Membrane-fusion protein%3B E%3D4e-06 VC1410%3B COG1566 Multidrug resistance efflux pump%3B E%3D0.008 PFAM: PF00364%3B Biotin-requiring enzyme%3B E%3D0.39 gene gene2880 http://www.ncbi.nlm.nih.gov/gene/?term=RB5116 RB5117 RB5117 RB5117 2626801 2630130 + cation/multidrug efflux pump PMID: 8407802 best DB hits: BLAST: pir:F82829%3B acriflavin resistance protein XF0243 [imported] - Xylella%3B E%3D2e-88 pir:F82159%3B transporter%2C AcrBD/F family VC1757 [imported] - Vibrio%3B E%3D3e-86 pir:B83627%3B probable RND efflux transporter PA0158 [imported] -%3B E%3D6e-79 COG: XF0243%3B COG0841 Cation/multidrug efflux pump%3B E%3D2e-89 PFAM: PF00873%3B AcrB/AcrD/AcrF family%3B E%3D3e-15 gene gene2881 http://www.ncbi.nlm.nih.gov/gene/?term=RB5117 RB5118 RB5118 RB5118 2630150 2630572 - hypothetical protein gene gene2882 http://www.ncbi.nlm.nih.gov/gene/?term=RB5118 RB5119 RB5119 RB5119 2630613 2633738 - signal peptide gene gene2883 http://www.ncbi.nlm.nih.gov/gene/?term=RB5119 RB512 RB512 RB512 283061 284350 - signal peptide gene gene293 http://www.ncbi.nlm.nih.gov/gene/?term=RB512 RB5123 RB5123 RB5123 2633691 2633858 + hypothetical protein gene gene2884 http://www.ncbi.nlm.nih.gov/gene/?term=RB5123 RB5124 RB5124 RB5124 2633842 2634558 + hypothetical protein gene gene2885 http://www.ncbi.nlm.nih.gov/gene/?term=RB5124 RB5126 RB5126 flgI flgI 2634468 2636198 - flagellar P-ring protein best DB hits: BLAST: pir:G72242%3B flagellar P-ring protein - Thermotoga maritima (strain%3B E%3D9e-07 gb:AAG09321.1%3B (AF178757) CpcF [Nostoc sp. PCC 7120]%3B E%3D0.10 pir:T44927%3B hypothetical protein orf398 [imported] - Anabaena sp.%3B E%3D0.47 COG: TM1539%3B COG1706 Flagellar basal-body P-ring protein%3B E%3D9e-08 gene gene2886 http://www.ncbi.nlm.nih.gov/gene/?term=RB5126 RB5128 RB5128 RB5128 2636175 2637989 + hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:B83386%3B hypothetical protein PA2078 [imported] - Pseudomonas%3B E%3D7e-14 swissprot:P55493%3B Y4IJ_RHISN HYPOTHETICAL 65.5 KD PROTEIN Y4IJ%3B E%3D2e-13 swissprot:P55496%3B Y4IM_RHISN HYPOTHETICAL 47.1 KD PROTEIN Y4IM%3B E%3D1e-11 PFAM: PF00034%3B Cytochrome c%3B E%3D0.064 gene gene2887 http://www.ncbi.nlm.nih.gov/gene/?term=RB5128 RB5133 RB5133 RB5133 2638064 2639254 + signal peptide gene gene2888 http://www.ncbi.nlm.nih.gov/gene/?term=RB5133 RB5134 RB5134 RB5134 2639251 2639877 + xanthosine triphosphate pyrophosphatase PMID: 8789257 best DB hits: BLAST: ddbj:BAB06786.1%3B (AP001517) BH3067~~unknown conserved protein%3B E%3D4e-31 pir:S76403%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D7e-29 pir:C69986%3B conserved hypothetical protein ysnA - Bacillus subtilis%3B E%3D1e-27 COG: BH3067%3B COG0127 Xanthosine triphosphate pyrophosphatase%3B E%3D3e-32 PFAM: PF01725%3B Ham1 family%3B E%3D1.2e-72 gene gene2889 http://www.ncbi.nlm.nih.gov/gene/?term=RB5134 RB5135 RB5135 RB5135 2639853 2640266 - 6-pyruvoyl tetrahydrobiopterin synthase best DB hits: BLAST: swissprot:Q9ZDY5%3B Y178_RICPR HYPOTHETICAL PROTEIN RP178 -----%3B E%3D2e-23 pir:E81913%3B hypothetical protein NMA0704 [imported] - Neisseria%3B E%3D3e-12 pir:G81189%3B 6-pyruvoyl tetrahydrobiopterin synthase%2C probable%3B E%3D7e-12 COG: RP178%3B COG0720 6-pyruvoyl-tetrahydropterin synthase%3B E%3D2e-24 PFAM: PF01242%3B 6-pyruvoyl tetrahydropterin synthase%3B E%3D1.2e-09 gene gene2890 http://www.ncbi.nlm.nih.gov/gene/?term=RB5135 RB5137 RB5137 RB5137 2640539 2640820 - hypothetical protein gene gene2891 http://www.ncbi.nlm.nih.gov/gene/?term=RB5137 RB5138 RB5138 RB5138 2640848 2641024 - hypothetical protein gene gene2892 http://www.ncbi.nlm.nih.gov/gene/?term=RB5138 RB5139 RB5139 RB5139 2640970 2641920 + hypothetical protein gene gene2893 http://www.ncbi.nlm.nih.gov/gene/?term=RB5139 RB514 RB514 RB514 284397 284567 - hypothetical protein gene gene294 http://www.ncbi.nlm.nih.gov/gene/?term=RB514 RB5140 RB5140 RB5140 2641937 2643778 + NADH-dependent dehydrogenase PMID: 8472911 best DB hits: BLAST: embl:CAB02496.1%3B (Z80356) glucose-fructose oxidoreductase%3B E%3D2e-07 pdb:1OFG%3B A Chain A%2C Glucose-Fructose Oxidoreductase -----%3B E%3D2e-07 pdb:1EVJ%3B A Chain A%2C Crystal Structure Of Glucose-Fructose%3B E%3D2e-07 COG: BH1248%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D1e-05 PFAM: PF01408%3B Oxidoreductase%2C NAD-bindi%3B E%3D3.2e-09 gene gene2894 http://www.ncbi.nlm.nih.gov/gene/?term=RB5140 RB5143 RB5143 RB5143 2643848 2645287 + hypothetical protein PMID: 10470850 best DB hits: BLAST: ddbj:BAB09588.1%3B (AB018118) gene_id:MRI1.6~~pir D64592~~similar to%3B E%3D8e-10 pir:S77300%3B hypothetical protein slr1403 - Synechocystis sp. (strain%3B E%3D0.018 PFAM: PF02012%3B BNR repeat%3B E%3D0.076 gene gene2895 http://www.ncbi.nlm.nih.gov/gene/?term=RB5143 RB5145 RB5145 RB5145 2645280 2645519 + hypothetical protein gene gene2896 http://www.ncbi.nlm.nih.gov/gene/?term=RB5145 RB5146 RB5146 RB5146 2645523 2647091 + arylsulphatase A PMID: 7910580 best DB hits: BLAST: embl:CAA36398.1%3B (X52150) arylsulphatase a [Homo sapiens]%3B E%3D6e-46 gb:AAB03341.1%3B (U62317) arylsulfatase A [Homo sapiens]%3B E%3D6e-46 swissprot:P50428%3B ARSA_MOUSE ARYLSULFATASE A PRECURSOR (ASA)%3B E%3D2e-45 COG: aslA%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D4e-22 PFAM: PF01069%3B Fatty acid desaturase%3B E%3D0.82 PF00884%3B Sulfatase%3B E%3D1.4e-38 gene gene2897 http://www.ncbi.nlm.nih.gov/gene/?term=RB5146 RB5147 RB5147 RB5147 2647120 2649273 - hypothetical protein gene gene2898 http://www.ncbi.nlm.nih.gov/gene/?term=RB5147 RB5149 RB5149 RB5149 2649249 2650421 - hypothetical protein gene gene2899 http://www.ncbi.nlm.nih.gov/gene/?term=RB5149 RB5150 RB5150 RB5150 2650462 2650605 + hypothetical protein gene gene2900 http://www.ncbi.nlm.nih.gov/gene/?term=RB5150 RB5151 RB5151 ilvA ilvA 2650568 2651815 - threonine dehydratase catalyzes the formation of 2-oxobutanoate from L-threonine%3B biosynthetic gene gene2901 http://www.ncbi.nlm.nih.gov/gene/?term=RB5151 RB5152 RB5152 RB5152 2651835 2652788 - ABC transporter ATP-binding protein PMID: 2229036 best DB hits: BLAST: swissprot:P33982%3B YHBG_AZOCA PROBABLE ABC TRANSPORTER ATP-BINDING%3B E%3D2e-66 gb:AAA80299.1%3B (U23471) ABC-type permease homolog [Rhizobium%3B E%3D1e-64 swissprot:P25885%3B YHBG_RHIME PROBABLE ABC TRANSPORTER ATP-BINDING%3B E%3D7e-63 COG: DR2134%3B COG1137 ABC-type (unclassified) transport system%2C ATPase%3B E%3D2e-61 PA1071%3B COG0411 High-affinity branched-chain amino acid transport%3B E%3D1e-37 MTH1370%3B COG1131 ABC-type multidrug transport system%2C ATPase%3B E%3D3e-35 PFAM: PF00005%3B ABC transporter%3B E%3D3.8e-59 gene gene2902 http://www.ncbi.nlm.nih.gov/gene/?term=RB5152 RB5154 RB5154 lepB lepB 2652810 2654993 - signal peptidase I PMID: 2202591 best DB hits: BLAST: pir:C82073%3B signal peptidase I VC2462 [imported] - Vibrio cholerae%3B E%3D3e-07 pir:H83550%3B signal peptidase I PA0768 [imported] - Pseudomonas%3B E%3D3e-06 swissprot:P23697%3B LEP_SALTY SIGNAL PEPTIDASE I (SPASE I) (LEADER%3B E%3D3e-06 COG: VC2462%3B COG0681 Signal peptidase I%3B E%3D3e-08 PFAM: PF00461%3B Signal peptidase I%3B E%3D0.00013 gene gene2903 http://www.ncbi.nlm.nih.gov/gene/?term=RB5154 RB5161 RB5161 RB5161 2655056 2656354 + hypothetical protein gene gene2904 http://www.ncbi.nlm.nih.gov/gene/?term=RB5161 RB5162 RB5162 RB5162 2656424 2657602 + hypothetical protein gene gene2905 http://www.ncbi.nlm.nih.gov/gene/?term=RB5162 RB5164 RB5164 RB5164 2657709 2658365 - signal peptide gene gene2906 http://www.ncbi.nlm.nih.gov/gene/?term=RB5164 RB5167 RB5167 RB5167 2658366 2658500 - hypothetical protein gene gene2907 http://www.ncbi.nlm.nih.gov/gene/?term=RB5167 RB5168 RB5168 RB5168 2658508 2658690 + hypothetical protein PMID: 10880436 gene gene2908 http://www.ncbi.nlm.nih.gov/gene/?term=RB5168 RB517 RB517 RB517 284655 284828 - hypothetical protein gene gene295 http://www.ncbi.nlm.nih.gov/gene/?term=RB517 RB5170 RB5170 cpaA cpaA 2658816 2659373 + type IV prepilin peptidase CpaA PMID: 11823852 best DB hits: BLAST: swissprot:Q56740%3B LEP4_VIBVU TYPE 4 PREPILIN-LIKE PROTEINS LEADER%3B E%3D0.020 pir:S32915%3B type IV prepilin peptidase (EC 3.4.99.-) pilD -%3B E%3D0.059 pir:B82078%3B leader peptidase PilD VC2426 [imported] - Vibrio%3B E%3D0.065 COG: VC2426%3B COG1989 Signal peptidase%2C cleaves prepilin-like proteins%3B E%3D0.006 PFAM: PF01478%3B Type III leader peptidase famil%3B E%3D0.028 gene gene2909 http://www.ncbi.nlm.nih.gov/gene/?term=RB5170 RB5172 RB5172 cpaB cpaB 2659566 2660777 + pilus assembly protein CpaB PMID: 10880436 best DB hits: BLAST: gb:AAF40191.1%3B AF229646_3 (AF229646) CpaB [Caulobacter crescentus]%3B E%3D0.003 pir:A70601%3B hypothetical protein Rv0990c - Mycobacterium%3B E%3D0.18 gene gene2910 http://www.ncbi.nlm.nih.gov/gene/?term=RB5172 RB5173 RB5173 RB5173 2660799 2660933 - hypothetical protein gene gene2911 http://www.ncbi.nlm.nih.gov/gene/?term=RB5173 RB5174 RB5174 cpaC cpaC 2660936 2662705 + outer membrane channel for pilus assembly CpaC PMID: 10880436 best DB hits: BLAST: swissprot:P55702%3B Y4XJ_RHISN HYPOTHETICAL 44.3 KD PROTEIN Y4XJ%3B E%3D1e-40 gb:AAG60826.1%3B AF322012_131 (AF322013) RhcC2 [Bradyrhizobium%3B E%3D4e-36 gb:AAF40192.1%3B AF229646_4 (AF229646) CpaC [Caulobacter crescentus]%3B E%3D5e-32 COG: PA4304%3B COG1450 General secretory pathway protein D%3B E%3D1e-24 PFAM: PF00263%3B Bacterial type II and III secreti%3B E%3D3e-26 gene gene2912 http://www.ncbi.nlm.nih.gov/gene/?term=RB5174 RB5175 RB5175 cpaE cpaE 2662802 2664031 + pilus assembly protein CpaE PMID: 10880436 best DB hits: BLAST: pir:F83108%3B hypothetical protein PA4303 [imported] - Pseudomonas%3B E%3D3e-11 gb:AAF40194.1%3B AF229646_6 (AF229646) CpaE [Caulobacter crescentus]%3B E%3D3e-06 swissprot:Q55900%3B MIND_SYNY3 SEPTUM SITE-DETERMINING PROTEIN MIND%3B E%3D3e-05 COG: sll0289%3B COG2894 Septum formation inhibitor-activating ATPase%3B E%3D2e-06 PH0612%3B COG0455 ATPases involved in chromosome partitioning%3B E%3D4e-05 BH3842_1%3B COG0784 CheY-like receiver domains%3B E%3D0.001 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D0.0058 gene gene2913 http://www.ncbi.nlm.nih.gov/gene/?term=RB5175 RB5177 RB5177 lnt lnt 2664203 2665918 + apolipoprotein N-acyltransferase PMID: 8344936 best DB hits: BLAST: swissprot:Q9ZDG3%3B LNT_RICPR APOLIPOPROTEIN N-ACYLTRANSFERASE (ALP%3B E%3D7e-14 pir:A82261%3B apolipoprotein N-acyltransferase VC0958 [imported] -%3B E%3D2e-12 swissprot:P44626%3B LNT_HAEIN APOLIPOPROTEIN N-ACYLTRANSFERASE (ALP%3B E%3D1e-10 COG: RP366%3B COG0815 Apolipoprotein N-acyltransferase%3B E%3D6e-15 gene gene2914 http://www.ncbi.nlm.nih.gov/gene/?term=RB5177 RB5178 RB5178 proS proS 2665962 2667482 - prolyl-tRNA synthetase catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) gene gene2915 http://www.ncbi.nlm.nih.gov/gene/?term=RB5178 RB5179 RB5179 carA carA 2667464 2668633 - carbamoyl phosphate synthase small subunit catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways%3B forms an octamer composed of four CarAB dimers gene gene2916 http://www.ncbi.nlm.nih.gov/gene/?term=RB5179 RB518 RB518 RB518 284784 285023 + hypothetical protein gene gene296 http://www.ncbi.nlm.nih.gov/gene/?term=RB518 RB5180 RB5180 RB5180 2668584 2668793 + signal peptide gene gene2917 http://www.ncbi.nlm.nih.gov/gene/?term=RB5180 RB5181 RB5181 RB5181 2668763 2668873 + hypothetical protein gene gene2918 http://www.ncbi.nlm.nih.gov/gene/?term=RB5181 RB5182 RB5182 RB5182 2668888 2669247 - hypothetical protein gene gene2919 http://www.ncbi.nlm.nih.gov/gene/?term=RB5182 RB5184 RB5184 RB5184 2669274 2669903 - signal peptide gene gene2920 http://www.ncbi.nlm.nih.gov/gene/?term=RB5184 RB5186 RB5186 ychF ychF 2669970 2671136 - GTP-dependent nucleic acid-binding protein EngD translation-associated GTPase%3B the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3)%3B fluorescence spectroscopy revealed nucleic acid binding%3B the yeast protein YBR025c interacts with the translation elongation factor eEF1 gene gene2921 http://www.ncbi.nlm.nih.gov/gene/?term=RB5186 RB5189 RB5189 RB5189 2671205 2672944 - hypothetical protein gene gene2922 http://www.ncbi.nlm.nih.gov/gene/?term=RB5189 RB519 RB519 RB519 284872 285036 - hypothetical protein gene gene297 http://www.ncbi.nlm.nih.gov/gene/?term=RB519 RB5191 RB5191 queA queA 2672933 2674141 + S-adenosylmethionine:tRNA ribosyltransferase-isomerase PMID: 8347586 best DB hits: BLAST: swissprot:Q9WZ44%3B QUEA_THEMA S-ADENOSYLMETHIONINE:TRNA%3B E%3D2e-68 gb:AAK05673.1%3B AE006388_4 (AE006388) S-adenosylmethionine tRNA%3B E%3D3e-68 swissprot:O32054%3B QUEA_BACSU S-ADENOSYLMETHIONINE:TRNA%3B E%3D2e-64 COG: TM0574%3B COG0809%3B E%3D2e-69 queA%3B COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase%3B E%3D7e-57 HI0245%3B COG0809%3B E%3D1e-54 PFAM: PF02547%3B Queuosine biosynthesis protei%3B E%3D5.5e-57 gene gene2923 http://www.ncbi.nlm.nih.gov/gene/?term=RB5191 RB5195 RB5195 RB5195 2674328 2675845 + N-acetylgalactosamine 6-sulfatase (GALNS) PMID: 8020961 best DB hits: BLAST: ddbj:BAA04535.1%3B (D17629) N-acetylgalactosamine 6-sulfate%3B E%3D5e-32 gb:AAF63858.1%3B (AF112242) N-acetylgalactosamine-6-sulfate%3B E%3D2e-29 embl:CAA36398.1%3B (X52150) arylsulphatase a [Homo sapiens]%3B E%3D1e-28 COG: yidJ%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D2e-24 PFAM: PF00884%3B Sulfatase%3B E%3D7.6e-66 gene gene2924 http://www.ncbi.nlm.nih.gov/gene/?term=RB5195 RB5196 RB5196 RB5196 2675953 2678058 - alpha-amylase PMID: 9882648 PMID: 10411273 best DB hits: BLAST: embl:CAA09772.1%3B (AJ011781) amylosucrase [Neisseria%3B E%3D1e-165 pir:C75457%3B alpha-amlyase - Deinococcus radiodurans (strain R1)%3B E%3D1e-123 pir:E75322%3B probable trehalose synthase - Deinococcus radiodurans%3B E%3D4e-41 COG: DR0933%3B COG0366 Glycosidases%3B E%3D1e-124 PFAM: PF00128%3B Alpha amylase%2C catalytic domain%3B E%3D1.5e-26 gene gene2925 http://www.ncbi.nlm.nih.gov/gene/?term=RB5196 RB5197 RB5197 sps sps 2677961 2680276 - sucrose-phosphate synthase PMID: 1840396 PMID: 10411273 best DB hits: BLAST: pir:S75935%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D1e-155 pir:T04062%3B sucrose-phosphate synthase homolog F28M11.40 - Arabidopsis%3B E%3D6e-91 pir:T04103%3B sucrose-phosphate synthase (EC 2.4.1.14) 1 - rice%3B E%3D1e-87 COG: sll0045_1%3B COG0438 Predicted glycosyltransferases%3B E%3D1e-111 sll0045_2%3B COG0561 Predicted hydrolases of the HAD superfamily%3B E%3D8e-40 PH1844%3B COG0438 Predicted glycosyltransferases%3B E%3D2e-11 PFAM: PF00534%3B Glycosyl transferases group 1%3B E%3D2.6e-18 PF00702%3B haloacid dehalogenase-like hy%3B E%3D0.67 gene gene2926 http://www.ncbi.nlm.nih.gov/gene/?term=RB5197 RB5198 RB5198 scrK scrK 2680318 2681346 - fructokinase PMID: 1809835 PMID: 10411273 best DB hits: BLAST: gb:AAG60871.1%3B AF322012_176 (AF322013) ID402 [Bradyrhizobium%3B E%3D5e-08 gb:AAK03933.1%3B (AE006222) unknown [Pasteurella multocida]%3B E%3D2e-06 pir:G75112%3B fructokinase (EC 2.7.1.4) PAB0482 - Pyrococcus abyssi%3B E%3D2e-05 COG: PAB0482%3B COG0524 Sugar kinases%2C ribokinase%3B E%3D2e-06 PFAM: PF00294%3B pfkB family carbohydrate kinase%3B E%3D2.5e-12 gene gene2927 http://www.ncbi.nlm.nih.gov/gene/?term=RB5198 RB52 RB52 RB52 23323 23670 - hypothetical protein gene gene30 http://www.ncbi.nlm.nih.gov/gene/?term=RB52 RB520 RB520 RB520 284989 286116 + hypothetical protein best DB hits: BLAST: pir:S75232%3B hypothetical protein sll1830 - Synechocystis sp. (strain%3B E%3D8e-04 gene gene298 http://www.ncbi.nlm.nih.gov/gene/?term=RB520 RB5200 RB5200 RB5200 2681425 2684253 + alpha-amylase PMID: 1747104 best DB hits: BLAST: ddbj:BAA11010.1%3B (D64130) alpha-amylase [Sulfolobus solfataricus]%3B E%3D4e-93 pir:JC5135%3B alpha-amylase (EC 3.2.1.1) - Sulfolobus solfataricus%3B E%3D4e-93 pir:S73087%3B alpha-amylase (EC 3.2.1.1) precursor - Sulfolobus%3B E%3D1e-89 COG: Rv1562c%3B COG0296 1%2C4-alpha-glucan branching enzyme%3B E%3D6e-72 BS_amyX%3B COG1523 Pullulanase and related glycosidases%3B E%3D1e-14 YEL011w%3B COG0296 1%2C4-alpha-glucan branching enzyme%3B E%3D1e-12 PFAM: PF00128%3B Alpha amylase%2C catalytic domain%3B E%3D2.4e-17 gene gene2928 http://www.ncbi.nlm.nih.gov/gene/?term=RB5200 RB5205 RB5205 RB5205 2684362 2686242 + peptidyl-prolyl cis-trans isomerase PMID: 2186809 best DB hits: BLAST: ddbj:BAB04896.1%3B (AP001511) protein secretion (post-translocation%3B E%3D2e-08 pir:E71662%3B protein export protein prsa precursor (prsA) RP576 -%3B E%3D3e-05 pir:A83421%3B peptidyl-prolyl cis-trans isomerase D PA1805 [imported]%3B E%3D4e-05 COG: BH1177%3B COG0760 Parvulin-like peptidyl-prolyl isomerase%3B E%3D2e-09 PFAM: PF00639%3B PPIC-type PPIASE domain.%3B E%3D2.4e-08 gene gene2929 http://www.ncbi.nlm.nih.gov/gene/?term=RB5205 RB5207 RB5207 RB5207 2686274 2686471 - hypothetical protein gene gene2930 http://www.ncbi.nlm.nih.gov/gene/?term=RB5207 RB5208 RB5208 RB5208 2686533 2687357 - biotin apo-protein ligase-related protein PMID: 11030655 best DB hits: BLAST: embl:CAA98714.1%3B (Z74189) ORF YDL141w [Saccharomyces cerevisiae]%3B E%3D0.018 pir:H81716%3B biotin apo-protein ligase-related protein TC0305%3B E%3D0.020 pir:A72116%3B biotin apo-protein ligase-related protein CP0643%3B E%3D0.089 gene gene2931 http://www.ncbi.nlm.nih.gov/gene/?term=RB5208 RB5209 RB5209 RB5209 2687356 2687661 + hypothetical protein gene gene2932 http://www.ncbi.nlm.nih.gov/gene/?term=RB5209 RB521 RB521 RB521 286208 286399 - hypothetical protein gene gene299 http://www.ncbi.nlm.nih.gov/gene/?term=RB521 RB5210 RB5210 RB5210 2687633 2688904 + signal peptide gene gene2933 http://www.ncbi.nlm.nih.gov/gene/?term=RB5210 RB5211 RB5211 RB5211 2688867 2689346 + hypothetical protein gene gene2934 http://www.ncbi.nlm.nih.gov/gene/?term=RB5211 RB5212 RB5212 RB5212 2689312 2689485 + hypothetical protein gene gene2935 http://www.ncbi.nlm.nih.gov/gene/?term=RB5212 RB5213 RB5213 RB5213 2689508 2690194 - hypothetical protein PMID: 11016950 best DB hits: BLAST: gb:AAG19976.1%3B (AE005079) Vng1746c [Halobacterium sp. NRC-1]%3B E%3D7e-08 embl:CAB61591.1%3B (AL133210) hypothetical protein SCG11A.10c%3B E%3D1e-04 swissprot:P54543%3B YQJF_BACSU HYPOTHETICAL 23.9 KD PROTEIN IN%3B E%3D0.002 COG: VNG1746C%3B COG3361 Uncharacterized ACR%3B E%3D7e-09 gene gene2936 http://www.ncbi.nlm.nih.gov/gene/?term=RB5213 RB5214 RB5214 RB5214 2690277 2691764 - hypothetical protein gene gene2937 http://www.ncbi.nlm.nih.gov/gene/?term=RB5214 RB5217 RB5217 RB5217 2691666 2692205 + hypothetical protein gene gene2938 http://www.ncbi.nlm.nih.gov/gene/?term=RB5217 RB522 RB522 xylR xylR 286375 287550 + xylose operon regulatory protein PMID: 8041620 best DB hits: BLAST: swissprot:P37390%3B XYLR_ECOLI XYLOSE OPERON REGULATORY PROTEIN%3B E%3D3e-49 ddbj:BAB03212.1%3B (AB046360) xylose operon regulatory%3B E%3D1e-42 swissprot:P45043%3B XYLR_HAEIN XYLOSE OPERON REGULATORY PROTEIN%3B E%3D3e-42 COG: xylR_1%3B COG1609 Transcriptional regulators%3B E%3D2e-27 xylR_2%3B COG2207 AraC-type DNA-binding domain-containing proteins%3B E%3D1e-15 BS_degA%3B COG1609 Transcriptional regulators%3B E%3D1e-08 PFAM: PF00532%3B Periplasmic binding proteins%3B E%3D0.085 PF00165%3B Bacterial regulatory helix-tu%3B E%3D2e-18 gene gene300 http://www.ncbi.nlm.nih.gov/gene/?term=RB522 RB5220 RB5220 RB5220 2691774 2692151 - hypothetical protein gene gene2939 http://www.ncbi.nlm.nih.gov/gene/?term=RB5220 RB5221 RB5221 RB5221 2692135 2692467 - hypothetical protein gene gene2940 http://www.ncbi.nlm.nih.gov/gene/?term=RB5221 RB5223 RB5223 RB5223 2692568 2693866 + merozoite surface protein 3b best DB hits: BLAST: pir:MMFFB2%3B laminin gamma-1 chain precursor - fruit fly (Drosophila%3B E%3D0.34 swissprot:P15215%3B LMG1_DROME LAMININ GAMMA-1 CHAIN PRECURSOR%3B E%3D0.34 prf:1410326A%3B laminin B2 [Drosophila sp.]%3B E%3D0.34 gene gene2941 http://www.ncbi.nlm.nih.gov/gene/?term=RB5223 RB5225 RB5225 RB5225 2693979 2694245 - hypothetical protein gene gene2942 http://www.ncbi.nlm.nih.gov/gene/?term=RB5225 RB5226 RB5226 tag tag 2694230 2694835 + DNA-3-methyladenine glycosylase I PMID: 3536912 best DB hits: BLAST: embl:CAC01344.1%3B (AL390975) DNA-3-methyladenine glycosylase I%3B E%3D1e-44 gb:AAG58698.1%3B AE005582_1 (AE005582) 3-methyladenine DNA%3B E%3D1e-42 swissprot:P05100%3B 3MG1_ECOLI DNA-3-METHYLADENINE GLYCOSYLASE I%3B E%3D2e-42 COG: tag%3B COG2818 3-Methyladenine DNA glycosylase%3B E%3D2e-43 gene gene2943 http://www.ncbi.nlm.nih.gov/gene/?term=RB5226 RB5228 RB5228 RB5228 2694819 2695079 - hypothetical protein gene gene2944 http://www.ncbi.nlm.nih.gov/gene/?term=RB5228 RB5229 RB5229 RB5229 2695138 2695872 + signal peptide gene gene2945 http://www.ncbi.nlm.nih.gov/gene/?term=RB5229 RB523 RB523 RB523 287547 287798 - hypothetical protein gene gene301 http://www.ncbi.nlm.nih.gov/gene/?term=RB523 RB5230 RB5230 RB5230 2695884 2696963 + signal peptide gene gene2946 http://www.ncbi.nlm.nih.gov/gene/?term=RB5230 RB5231 RB5231 RB5231 2696909 2697256 - hypothetical protein best DB hits: BLAST: pir:JN0454%3B hypothetical 10.5K protein (URA1 5' region) - gill%3B E%3D2e-14 pir:D70531%3B hypothetical protein Rv2705c - Mycobacterium%3B E%3D2e-05 pir:A75544%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D4e-05 gene gene2947 http://www.ncbi.nlm.nih.gov/gene/?term=RB5231 RB5235 RB5235 RB5235 2697353 2697820 - signal peptide gene gene2948 http://www.ncbi.nlm.nih.gov/gene/?term=RB5235 RB5238 RB5238 RB5238 2697775 2697996 + hypothetical protein gene gene2949 http://www.ncbi.nlm.nih.gov/gene/?term=RB5238 RB524 RB524 RB524 287813 292486 - secreted glycosyl hydrolase PMID: 8843436 best DB hits: BLAST: embl:CAB94634.1%3B (AL359215) secreted glycosyl hydrolase.%3B E%3D1e-09 pir:T34929%3B hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces%3B E%3D1e-04 embl:CAB55721.1%3B (AL117387) hypothetical protein SCF41.18%3B E%3D2e-04 PFAM: PF00034%3B Cytochrome c%3B E%3D0.0012 gene gene302 http://www.ncbi.nlm.nih.gov/gene/?term=RB524 RB5240 RB5240 RB5240 2698074 2698631 + signal peptide best DB hits: PFAM: PF01617%3B Surface antigen%3B E%3D0.0013 gene gene2950 http://www.ncbi.nlm.nih.gov/gene/?term=RB5240 RB5241 RB5241 RB5241 2698715 2699374 + hypothetical protein best DB hits: PFAM: PF01434%3B Peptidase M41%3B E%3D0.034 gene gene2951 http://www.ncbi.nlm.nih.gov/gene/?term=RB5241 RB5243 RB5243 xynB xynB 2699382 2700380 + endo-1%2C4-beta-xylanase B PMID: 1909424 best DB hits: BLAST: swissprot:P26223%3B XYNB_BUTFI ENDO-1%2C4-BETA-XYLANASE B (XYLANASE B)%3B E%3D1e-08 prf:1718306A%3B xylanase [Butyrivibrio fibrisolvens]%3B E%3D1e-08 gb:AAK04528.1%3B AE006280_4 (AE006280) sugar hydrolase [Lactococcus%3B E%3D4e-06 gene gene2952 http://www.ncbi.nlm.nih.gov/gene/?term=RB5243 RB5245 RB5245 RB5245 2700384 2701043 + hemolysin III PMID: 7495855 best DB hits: BLAST: ddbj:BAB06584.1%3B (AP001516) hemolysin III [Bacillus halodurans]%3B E%3D1e-17 swissprot:P54176%3B HLY3_BACCE HEMOLYSIN III (HLY-III) -----%3B E%3D2e-16 swissprot:Q46827%3B YQFA_ECOLI HYPOTHETICAL 23.8 KD PROTEIN IN%3B E%3D2e-16 COG: BH2865%3B COG1272 Predicted membrane proteins%2C hemolysin III homologs%3B E%3D1e-18 gene gene2953 http://www.ncbi.nlm.nih.gov/gene/?term=RB5245 RB5246 RB5246 RB5246 2700916 2701917 - signal peptide gene gene2954 http://www.ncbi.nlm.nih.gov/gene/?term=RB5246 RB5247 RB5247 RB5247 2702014 2704806 - hypothetical protein best DB hits: BLAST: swissprot:Q00808%3B HET1_PODAN VEGETATIBLE INCOMPATIBILITY PROTEIN%3B E%3D2e-25 swissprot:P49695%3B PKWA_THECU SERINETHREONINE-PROTEIN%3B E%3D1e-21 embl:CAB45034.1%3B (AL078635) WD-repeat containing protein%3B E%3D1e-21 COG: sll0163%3B COG2319 WD40 repeat protein%3B E%3D4e-18 PFAM: PF00400%3B WD domain%2C G-beta repeat%3B E%3D3e-05 gene gene2955 http://www.ncbi.nlm.nih.gov/gene/?term=RB5247 RB5253 RB5253 RB5253 2704803 2707307 - S-layer related protein PMID: 7522196 best DB hits: BLAST: swissprot:P35824%3B SLAP_BACCI S-LAYER RELATED PROTEIN PRECURSOR%3B E%3D0.18 PFAM: PF02369%3B Bacterial Ig-like domain (group 1)%3B E%3D0.1 PF02368%3B Bacterial Ig-like domain (group 2)%3B E%3D0.013 gene gene2956 http://www.ncbi.nlm.nih.gov/gene/?term=RB5253 RB5255 RB5255 RB5255 2707304 2708806 - hypothetical protein gene gene2957 http://www.ncbi.nlm.nih.gov/gene/?term=RB5255 RB5256 RB5256 RB5256 2708872 2710458 + cellulase PMID: 1955860 best DB hits: BLAST: pir:B72216%3B endoglucanase - Thermotoga maritima (strain MSB8)%3B E%3D7e-85 swissprot:P25472%3B GUND_CLOCE ENDOGLUCANASE D PRECURSOR%3B E%3D3e-52 swissprot:P16218%3B GUNH_CLOTM ENDOGLUCANASE H PRECURSOR (EGH)%3B E%3D5e-49 COG: TM1751%3B COG2730 Endoglucanase%3B E%3D6e-86 PFAM: PF00150%3B Cellulase (glycosyl hydrolase famil%3B E%3D5.3e-47 gene gene2958 http://www.ncbi.nlm.nih.gov/gene/?term=RB5256 RB5258 RB5258 RB5258 2710474 2710641 - hypothetical protein gene gene2959 http://www.ncbi.nlm.nih.gov/gene/?term=RB5258 RB5259 RB5259 RB5259 2710634 2713378 - SNF2 family helicase best DB hits: BLAST: pir:D83545%3B probable helicase PA0799 [imported] - Pseudomonas%3B E%3D8e-44 pir:C72027%3B swisnf family helicase_2 - Chlamydophila pneumoniae%3B E%3D6e-42 ddbj:BAA99057.1%3B (AP002548) SWISNF family helicase_2%3B E%3D1e-41 COG: PA0799%3B COG0553 Superfamily II DNA/RNA helicases%2C SNF2 family%3B E%3D7e-45 PFAM: PF00176%3B SNF2 and others N-terminal domain%3B E%3D2.4e-43 PF00271%3B Helicase conserved C-terminal doma%3B E%3D1.4e-23 gene gene2960 http://www.ncbi.nlm.nih.gov/gene/?term=RB5259 RB5261 RB5261 RB5261 2713332 2713712 - hypothetical protein gene gene2961 http://www.ncbi.nlm.nih.gov/gene/?term=RB5261 RB5262 RB5262 RB5262 2713742 2714029 + hypothetical protein gene gene2962 http://www.ncbi.nlm.nih.gov/gene/?term=RB5262 RB5263 RB5263 RB5263 2714052 2714999 + hypothetical protein best DB hits: BLAST: ref:XP_010773.1%3B hypothetical protein FLJ11151 [Homo sapiens]%3B E%3D2e-53 ddbj:BAA92034.1%3B (AK002013) unnamed protein product [Homo%3B E%3D7e-53 ddbj:BAB14194.1%3B (AK022710) unnamed protein product [Homo%3B E%3D2e-52 gene gene2963 http://www.ncbi.nlm.nih.gov/gene/?term=RB5263 RB5264 RB5264 RB5264 2715126 2715548 + hypothetical protein gene gene2964 http://www.ncbi.nlm.nih.gov/gene/?term=RB5264 RB5266 RB5266 RB5266 2715584 2715721 - hypothetical protein gene gene2965 http://www.ncbi.nlm.nih.gov/gene/?term=RB5266 RB5267 RB5267 RB5267 2715679 2715819 - hypothetical protein gene gene2966 http://www.ncbi.nlm.nih.gov/gene/?term=RB5267 RB5268 RB5268 RB5268 2715827 2717386 - hypothetical protein gene gene2967 http://www.ncbi.nlm.nih.gov/gene/?term=RB5268 RB5271 RB5271 RB5271 2717327 2717596 + hypothetical protein gene gene2968 http://www.ncbi.nlm.nih.gov/gene/?term=RB5271 RB5272 RB5272 RB5272 2717593 2718966 + hypothetical protein PMID: 9389475 best DB hits: BLAST: gb:AAB89850.1%3B (AE001008) conserved hypothetical protein%3B E%3D0.006 gb:AAG09249.1%3B AF176640_2 (AF176640) alcohol dehydrogenase%3B E%3D0.20 gb:AAD56237.2%3B AF184915_1 (AF184915) methanol dehydrogenase large%3B E%3D0.22 COG: AF1399%3B COG1520 Uncharacterized proteins of WD40-like repeat family%3B E%3D5e-04 PFAM: PF01011%3B PQQ enzyme repeat%3B E%3D0.022 gene gene2969 http://www.ncbi.nlm.nih.gov/gene/?term=RB5272 RB5275 RB5275 RB5275 2719039 2719860 - transcriptional regulator PMID: 8451183 best DB hits: BLAST: pir:C83489%3B probable transcriptional regulator PA1261 [imported] -%3B E%3D1e-39 gb:AAF43900.1%3B (U20115) adpA-like protein [Mycobacterium%3B E%3D2e-10 pir:T43707%3B hypothetical protein [imported] - Streptomyces%3B E%3D2e-09 COG: PA1261%3B COG2207 AraC-type DNA-binding domain-containing proteins%3B E%3D1e-40 PFAM: PF00165%3B Bacterial regulatory helix-turn-heli%3B E%3D2.7e-22 gene gene2970 http://www.ncbi.nlm.nih.gov/gene/?term=RB5275 RB5277 RB5277 dapA dapA 2719913 2720884 + dihydrodipicolinate synthase PMID: 1463470 best DB hits: BLAST: pir:D81141%3B dihydrodipicolinate synthase NMB0929 [imported] -%3B E%3D3e-09 pir:H81878%3B probable dihydrodipicolinate synthase (EC 4.2.1.52)%3B E%3D4e-09 ddbj:BAB05461.1%3B (AP001513) dihydrodipicolinate synthase%3B E%3D1e-07 COG: NMB0929%3B COG0329 Dihydrodipicolinate synthetase/N-acetylneuraminate%3B E%3D3e-10 PFAM: PF01137%3B RNA 3'-terminal phosphate cyclase%3B E%3D0.88 PF00701%3B Dihydrodipicolinate synthetase famil%3B E%3D0.00018 gene gene2971 http://www.ncbi.nlm.nih.gov/gene/?term=RB5277 RB5278 RB5278 dadA dadA 2720784 2722154 + D-amino acid dehydrogenase%2C small chain PMID: 7906689 best DB hits: BLAST: pir:F82279%3B D-amino acid dehydrogenase%2C small chain VC0786%3B E%3D7e-43 pir:A81228%3B D-amino acid dehydrogenase%2C small chain NMB0176%3B E%3D1e-42 pir:C82001%3B D-amino-acid dehydrogenase (EC 1.4.99.1) small subunit%3B E%3D3e-40 COG: VC0786%3B COG0665 Glycine/D-amino acid oxidases (deaminating)%3B E%3D6e-44 PFAM: PF01494%3B FAD binding domain%3B E%3D0.0014 PF02254%3B KTN NAD-binding domain%3B E%3D0.056 PF02032%3B Phytoene dehydrogenase related%3B E%3D0.013 gene gene2972 http://www.ncbi.nlm.nih.gov/gene/?term=RB5278 RB5279 RB5279 RB5279 2722255 2723181 + signal peptide gene gene2973 http://www.ncbi.nlm.nih.gov/gene/?term=RB5279 RB5280 RB5280 RB5280 2723227 2724033 - extracellular sucrase PMID: 7778976 PMID: 8086457 PMID: 11722934 best DB hits: BLAST: pir:S47527%3B extracellular sucrase - Zymomonas mobilis ----- prf:%3B E%3D0.10 swissprot:Q60115%3B INVB_ZYMMO EXTRACELLULAR SUCRASE%3B E%3D0.24 gb:AAC36942.1%3B (L33403) extracellular sucrase [Zymomonas mobilis]%3B E%3D0.24 gene gene2974 http://www.ncbi.nlm.nih.gov/gene/?term=RB5280 RB5281 RB5281 RB5281 2724076 2725707 - N-acetylgalactosamine 6-sulfatase (GALNS) PMID: 8020961 best DB hits: BLAST: ddbj:BAA04535.1%3B (D17629) N-acetylgalactosamine 6-sulfate%3B E%3D6e-47 gb:AAF63858.1%3B (AF112242) N-acetylgalactosamine-6-sulfate%3B E%3D8e-46 pir:KJHUAB%3B N-acetylgalactosamine-4-sulfatase (EC 3.1.6.12)%3B E%3D1e-44 COG: ydeN%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D1e-41 TM1703%3B COG1368 Phosphoglycerol transferase and related proteins%2C%3B E%3D7e-04 PAB0793%3B COG2194 Predicted membrane-associated%2C metal-dependent%3B E%3D0.003 PFAM: PF00884%3B Sulfatase%3B E%3D2.1e-109 gene gene2975 http://www.ncbi.nlm.nih.gov/gene/?term=RB5281 RB5282 RB5282 RB5282 2725707 2727443 - mucin-desulfating sulfatase (N-acetylglucosamine-6-sulfatase) PMID: 10809675 best DB hits: BLAST: gb:AAF72520.1%3B AF248951_1 (AF248951) mucin-desulfating sulfatase%3B E%3D2e-32 swissprot:P31447%3B YIDJ_ECOLI SULFATASE YIDJ -----%3B E%3D4e-27 gb:AAG58881.1%3B AE005599_13 (AE005599) sulfatase%3B E%3D8e-26 COG: yidJ%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D3e-28 PAB0793%3B COG2194 Predicted membrane-associated%2C metal-dependent%3B E%3D0.005 PFAM: PF00884%3B Sulfatase%3B E%3D1.1e-26 gene gene2976 http://www.ncbi.nlm.nih.gov/gene/?term=RB5282 RB5284 RB5284 RB5284 2727377 2727532 - hypothetical protein gene gene2977 http://www.ncbi.nlm.nih.gov/gene/?term=RB5284 RB5285 RB5285 RB5285 2727636 2727872 - collagen alpha-2 (XI) chain PMID: 8981332 best DB hits: BLAST: gb:AAA67751.1%3B (U16789) collagen alpha-2 (XI) chain [Mus%3B E%3D0.024 gb:AAA67752.1%3B (U16790) collagen alpha-2 (XI) chain [Mus%3B E%3D0.024 pir:A55576%3B collagen alpha 2(XI) chain precursor%2C long form - mouse%3B E%3D0.024 gene gene2978 http://www.ncbi.nlm.nih.gov/gene/?term=RB5285 RB5286 RB5286 RB5286 2727882 2728355 - signal peptide gene gene2979 http://www.ncbi.nlm.nih.gov/gene/?term=RB5286 RB5288 RB5288 RB5288 2728431 2729522 - large multi-functional protein best DB hits: BLAST: embl:CAB45032.1%3B (AL078635) large multi-functional%3B E%3D3e-22 embl:CAB58265.1%3B (AL121849) multi-domain protein%3B E%3D9e-19 pir:T36423%3B probable large%2C multifunctional secreted protein -%3B E%3D0.002 gene gene2980 http://www.ncbi.nlm.nih.gov/gene/?term=RB5288 RB5290 RB5290 RB5290 2729519 2730955 - NADH-dependent dehydrogenase best DB hits: BLAST: pir:T34927%3B probable oxidoreductase - Streptomyces coelicolor%3B E%3D2e-07 gb:AAC23913.1%3B (AF039207) NADH-dependent dehydrogenase homolog%3B E%3D6e-07 pir:B72359%3B lipopolysaccharide biosynthesis protein BplA -%3B E%3D3e-05 COG: TM0585%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D3e-06 PFAM: PF01408%3B Oxidoreductase%2C NAD-bindi%3B E%3D3.2e-18 gene gene2981 http://www.ncbi.nlm.nih.gov/gene/?term=RB5290 RB5294 RB5294 RB5294 2730983 2732584 - sulfatase atsG PMID: 9634230 best DB hits: BLAST: pir:F70837%3B probable sulfatase (EC 3.1.6.-) atsG - Mycobacterium%3B E%3D1e-37 prf:2204388A%3B sulphamidase [Homo sapiens]%3B E%3D4e-23 gb:AAG41945.1%3B AF304053_1 (AF304053) heparan N-sulfatase [Mus%3B E%3D8e-23 COG: Rv0296c%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D1e-38 PFAM: PF00884%3B Sulfatase%3B E%3D1.5e-28 gene gene2982 http://www.ncbi.nlm.nih.gov/gene/?term=RB5294 RB5295 RB5295 RB5295 2732591 2734072 - heparan N-sulfatase PMID: 96083602 best DB hits: BLAST: prf:2204388A%3B sulphamidase [Homo sapiens]%3B E%3D6e-47 gb:AAG17207.1%3B AF217204_1 (AF217204) heparan sulfate sulfamidase%3B E%3D6e-45 gb:AAF29467.1%3B (AF156255) N-sulfoglucosamine sulfohydrolase [Mus%3B E%3D4e-44 COG: Rv0296c%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D6e-38 VC2600%3B COG3083 Predicted hydrolase of alkaline phosphatase%3B E%3D9e-05 VNG0061C%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D0.006 PFAM: PF00884%3B Sulfatase%3B E%3D1.4e-43 gene gene2983 http://www.ncbi.nlm.nih.gov/gene/?term=RB5295 RB5298 RB5298 RB5298 2734032 2734208 + hypothetical protein gene gene2984 http://www.ncbi.nlm.nih.gov/gene/?term=RB5298 RB5300 RB5300 RB5300 2734433 2735635 - signal peptide gene gene2985 http://www.ncbi.nlm.nih.gov/gene/?term=RB5300 RB5302 RB5302 RB5302 2735773 2736366 - signal peptide PMID: 11823852 gene gene2986 http://www.ncbi.nlm.nih.gov/gene/?term=RB5302 RB5303 RB5303 RB5303 2736514 2736717 - hypothetical protein gene gene2987 http://www.ncbi.nlm.nih.gov/gene/?term=RB5303 RB5304 RB5304 RB5304 2736686 2737825 + hypothetical protein PMID: 10910347 best DB hits: BLAST: pir:C82791%3B conserved hypothetical protein XF0565 [imported] -%3B E%3D2e-39 pir:F72345%3B ray-related protein - Thermotoga maritima (strain MSB8)%3B E%3D3e-20 ddbj:BAB15493.1%3B (AK026507) unnamed protein product [Homo%3B E%3D6e-19 COG: XF0565%3B COG2930 Uncharacterized ACR%3B E%3D2e-40 PFAM: PF02590%3B Uncharacterized ACR%2C COG1576%3B E%3D0.0018 gene gene2988 http://www.ncbi.nlm.nih.gov/gene/?term=RB5304 RB5305 RB5305 RB5305 2737884 2739260 + arylsulphatase A PMID: 7910580 best DB hits: BLAST: embl:CAA36398.1%3B (X52150) arylsulphatase a [Homo sapiens]%3B E%3D7e-32 gb:AAB03341.1%3B (U62317) arylsulfatase A [Homo sapiens]%3B E%3D7e-32 pdb:1E2S%3B P Chain P%2C Crystal Structure Of An Arylsulfatase A%3B E%3D1e-31 COG: aslA%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D6e-28 BS_yqgS%3B COG1368 Phosphoglycerol transferase and related proteins%2C%3B E%3D0.001 VC2600%3B COG3083 Predicted hydrolase of alkaline phosphatase%3B E%3D0.006 PFAM: PF00884%3B Sulfatase%3B E%3D3.5e-33 gene gene2989 http://www.ncbi.nlm.nih.gov/gene/?term=RB5305 RB5308 RB5308 melR melR 2739330 2740187 - melibiose operon regulatory protein PMID: 2830169 PMID: 1445207 best DB hits: BLAST: gb:AAC24510.1%3B (AF049243) regulatory protein [Mesorhizobium loti]%3B E%3D5e-37 swissprot:P10411%3B MELR_ECOLI MELIBIOSE OPERON REGULATORY PROTEIN%3B E%3D6e-28 ddbj:BAB20427.1%3B (AB053204) melibiose operon regulatory protein%3B E%3D9e-28 COG: melR%3B COG2207 AraC-type DNA-binding domain-containing proteins%3B E%3D6e-29 BS_adaA%3B COG2169 Adenosine deaminase%3B E%3D6e-10 VC1825%3B COG2207 AraC-type DNA-binding domain-containing proteins%3B E%3D2e-09 PFAM: PF00165%3B Bacterial regulatory helix-turn-heli%3B E%3D1.8e-24 gene gene2990 http://www.ncbi.nlm.nih.gov/gene/?term=RB5308 RB531 RB531 RB531 292699 293757 - iron (III) transport system (iron (III)-binding protein) PMID: 2404942 best DB hits: BLAST: pir:S75102%3B hypothetical protein sll0237 - Synechocystis sp. (strain%3B E%3D7e-43 ddbj:BAB04232.1%3B (AP001508) iron (III) transport system (iron%3B E%3D9e-24 ddbj:BAA75385.1%3B (AB013374) Yvfk [Bacillus halodurans]%3B E%3D2e-21 COG: sll0237%3B COG1840 ABC-type thiamine transport systems%2C periplasmic%3B E%3D6e-44 VC1424%3B COG0687 Spermidine/putrescine-binding periplasmic protein%3B E%3D7e-04 PFAM: PF01547%3B Bacterial extracellular solut%3B E%3D0.027 gene gene303 http://www.ncbi.nlm.nih.gov/gene/?term=RB531 RB5310 RB5310 RB5310 2740323 2741906 + signal peptide PMID: 11259647 best DB hits: BLAST: gb:AAA93130.1%3B (U09139) chitinase precursor [Aeromonas%3B E%3D0.63 gb:AAG09437.1%3B AF181852_1 (AF181852) chitinase 92 [Aeromonas%3B E%3D0.63 PFAM: PF00801%3B PKD domain%3B E%3D0.25 PF00028%3B Cadherin domain%3B E%3D0.047 gene gene2991 http://www.ncbi.nlm.nih.gov/gene/?term=RB5310 RB5312 RB5312 pel pel 2741996 2743363 + pectate lyase PMID: 8955401 PMID: 9427544 best DB hits: BLAST: embl:CAA65785.1%3B (X97119) pectate lyase [Erwinia chrysanthemi]%3B E%3D5e-29 pir:JC6502%3B pectate lyase (EC 4.2.2.2) - Amycolata sp ----- gb:%3B E%3D0.026 gb:AAF23285.1%3B AC016661_10 (AC016661) pectate lyase%3B E%3D0.037 gene gene2992 http://www.ncbi.nlm.nih.gov/gene/?term=RB5312 RB5313 RB5313 RB5313 2743385 2745451 + ATP binding protein PMID: 10360571 best DB hits: BLAST: pir:F72395%3B hypothetical protein TM0280 - Thermotoga maritima%3B E%3D1e-102 gb:AAG58726.1%3B AE005584_8 (AE005584) orf%3B hypothetical protein%3B E%3D2e-82 ddbj:BAB05596.1%3B (AP001513) BH1877~~unknown conserved protein in%3B E%3D6e-15 gene gene2993 http://www.ncbi.nlm.nih.gov/gene/?term=RB5313 RB5316 RB5316 RB5316 2745433 2746494 + pectate lyase PMID: 8955401 PMID: 1983191 best DB hits: BLAST: pir:JC6502%3B pectate lyase (EC 4.2.2.2) - Amycolata sp ----- gb:%3B E%3D6e-30 pir:D72376%3B pectate lyase - Thermotoga maritima (strain MSB8)%3B E%3D1e-26 ddbj:BAA96477.1%3B (AB041769) pectate lyase Pel-4A [Bacillus sp.%3B E%3D3e-25 PFAM: PF00544%3B Pectate lyase%3B E%3D8.6e-31 gene gene2994 http://www.ncbi.nlm.nih.gov/gene/?term=RB5316 RB5319 RB5319 RB5319 2746608 2747300 + D-arabino 3-hexulose 6-phosphate formaldehyde lyase (hps-1) best DB hits: BLAST: gb:AAB90381.1%3B (AE001045) D-arabino 3-hexulose 6-phosphate%3B E%3D1e-33 pir:B71209%3B probable D-arabino 3-hexulose 6-phosphate formaldehyde%3B E%3D8e-33 pir:C75022%3B d-arabino 3-hexulose 6-phosphate formaldehyde lyase%3B E%3D7e-28 COG: AF0861_1%3B COG0269 3-hexulose-6-phosphate synthase and related%3B E%3D1e-33 sgaH%3B COG0269 3-hexulose-6-phosphate synthase and related proteins%3B E%3D4e-10 VCA0242%3B COG0269 3-hexulose-6-phosphate synthase and related%3B E%3D3e-09 PFAM: PF00834%3B Ribulose-phosphate 3 epimerase%3B E%3D0.56 PF02581%3B Thiamine monophosphate synthas%3B E%3D0.01 gene gene2995 http://www.ncbi.nlm.nih.gov/gene/?term=RB5319 RB5320 RB5320 RB5320 2747272 2748462 + zinc-type alcohol dehydrogenase PMID: 3622514 best DB hits: BLAST: ddbj:BAA75341.1%3B (AB011837) sorbitol dehydrogenase [Bacillus%3B E%3D8e-44 swissprot:P77539%3B YDJL_ECOLI HYPOTHETICAL ZINC-TYPE ALCOHOL%3B E%3D7e-35 gb:AAG56765.1%3B AE005400_10 (AE005400) oxidoreductase%3B E%3D9e-35 COG: BH0189%3B COG1063 Threonine dehydrogenase and related Zn-dependent%3B E%3D7e-45 PFAM: PF00107%3B Zinc-binding dehydrogenases%3B E%3D6.5e-60 gene gene2996 http://www.ncbi.nlm.nih.gov/gene/?term=RB5320 RB5321 RB5321 RB5321 2748548 2749432 + myo-inositol catabolism protein IolH PMID: 11997336 best DB hits: BLAST: swissprot:P42418%3B IOLH_BACSU IOLH PROTEIN ----- pir: H69645%3B E%3D0.061 swissprot:P49304%3B MOCC_RHIME RHIZOPINE CATABOLISM PROTEIN MOCC%3B E%3D0.20 pir:F72378%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D0.28 COG: BS_iolH%3B COG1082 Predicted endonucleases%3B E%3D0.006 PFAM: PF00631%3B GGL domain%3B E%3D0.31 gene gene2997 http://www.ncbi.nlm.nih.gov/gene/?term=RB5321 RB5323 RB5323 RB5323 2749365 2750459 + lipolytic enzyme PMID: 7610479 best DB hits: BLAST: embl:CAB09645.1%3B (Z96801) hypothetical protein MLCL581.26%3B E%3D7e-04 pir:H81408%3B probable periplasmic protein Cj0609c [imported] -%3B E%3D0.41 PFAM: PF00657%3B Lipase/Acylhydrolase with GDSL-%3B E%3D0.63 PF00815%3B Histidinol dehydrogenase%3B E%3D0.3 gene gene2998 http://www.ncbi.nlm.nih.gov/gene/?term=RB5323 RB5326 RB5326 RB5326 2750603 2753251 + hypothetical protein gene gene2999 http://www.ncbi.nlm.nih.gov/gene/?term=RB5326 RB5328 RB5328 RB5328 2753241 2754698 + hypothetical protein gene gene3000 http://www.ncbi.nlm.nih.gov/gene/?term=RB5328 RB533 RB533 RB533 293751 295241 + hypothetical protein gene gene304 http://www.ncbi.nlm.nih.gov/gene/?term=RB533 RB5332 RB5332 RB5332 2754863 2755486 - phosphoesterase PMID: 8159166 best DB hits: BLAST: pir:S41581%3B probable phosphoesterase (EC 3.1.-.-) U - Methanothermus%3B E%3D6e-04 pir:T35512%3B hypothetical protein SC6G10.03c - Streptomyces%3B E%3D0.002 pir:H69118%3B probable phosphoesterase (EC 3.1.-.-) MTH1882 -%3B E%3D0.016 COG: MTH1882%3B COG2129 Predicted phosphoesterases%2C related to the Icc%3B E%3D0.001 gene gene3001 http://www.ncbi.nlm.nih.gov/gene/?term=RB5332 RB5334 RB5334 RB5334 2755483 2757501 - Fe-S oxidoreductase best DB hits: BLAST: embl:CAB75387.1%3B (AL139298) hypothetical protein [Streptomyces%3B E%3D1e-110 pir:H72336%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D1e-103 pir:S77440%3B hypothetical protein sll1084 - Synechocystis sp. (strain%3B E%3D2e-93 COG: TM0770%3B COG1032 Fe-S oxidoreductases family 2%3B E%3D1e-104 slr0082%3B COG0621 Fe-S oxidoreductases family 1%3B E%3D0.008 gene gene3002 http://www.ncbi.nlm.nih.gov/gene/?term=RB5334 RB5336 RB5336 nasE nasE 2757501 2757821 + assimilatory nitrite reductase [NAD(P)H] small subunit PMID: 7868621 best DB hits: BLAST: swissprot:P42436%3B NASE_BACSU ASSIMILATORY NITRITE REDUCTASE%3B E%3D9e-09 pir:T35995%3B probable dioxygenase (EC 1.14.12.-) Rieske iron-sulfur%3B E%3D1e-08 ddbj:BAB04333.1%3B (AP001509) assimilatory nitrite reductase%3B E%3D1e-08 COG: BS_nasE%3B COG2146 Ferredoxin subunits of nitrite reductase and%3B E%3D9e-10 BH1672%3B COG0723 Rieske Fe-S protein%3B E%3D6e-05 XF1472%3B COG2146 Ferredoxin subunits of nitrite reductase and%3B E%3D6e-04 PFAM: PF00355%3B Rieske [2Fe-2S] domain%3B E%3D7.6e-20 gene gene3003 http://www.ncbi.nlm.nih.gov/gene/?term=RB5336 RB534 RB534 RB534 295211 295480 - hypothetical protein gene gene305 http://www.ncbi.nlm.nih.gov/gene/?term=RB534 RB5340 RB5340 RB5340 2757894 2760800 + hypothetical protein PMID: 11823852 best DB hits: BLAST: pir:A64656%3B hypothetical protein HP1089 - Helicobacter pylori%3B E%3D0.12 pir:C71944%3B hypothetical protein jhp0336 - Helicobacter pylori%3B E%3D0.76 ddbj:BAB06700.1%3B (AP001517) BH2981~~unknown [Bacillus halodurans]%3B E%3D0.77 gene gene3004 http://www.ncbi.nlm.nih.gov/gene/?term=RB5340 RB5343 RB5343 RB5343 2760797 2763571 + helicase best DB hits: BLAST: pir:F81294%3B probable helicase Cj1481c [imported] - Campylobacter%3B E%3D5e-27 pir:A71805%3B probable ATP-dependent helicase - Helicobacter pylori%3B E%3D5e-15 pir:A64714%3B helicase - Helicobacter pylori (strain 26695) -----%3B E%3D2e-14 COG: Cj1481c%3B COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit%3B E%3D4e-28 VC0190%3B COG0210 Superfamily I DNA and RNA helicases%3B E%3D3e-09 CT639%3B COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit%3B E%3D4e-08 PFAM: PF00580%3B UvrD/REP helicase%3B E%3D2.9e-18 PF01443%3B Viral (Superfamily 1) RNA hel%3B E%3D0.085 gene gene3005 http://www.ncbi.nlm.nih.gov/gene/?term=RB5343 RB5346 RB5346 RB5346 2763847 2764293 + transposase PMID: 8253675 best DB hits: BLAST: pir:E75550%3B probable transposase - Deinococcus radiodurans (strain%3B E%3D6e-06 pir:F64571%3B hypothetical protein SARA17 - Helicobacter pylori%3B E%3D3e-05 gb:AAG59402.1%3B AE005653_3 (AE005653) transposase%3B E%3D6e-05 COG: DR0177%3B COG1943 Predicted transposase%3B E%3D5e-07 PFAM: PF01797%3B Transposase IS200 like%3B E%3D7.8e-08 gene gene3006 http://www.ncbi.nlm.nih.gov/gene/?term=RB5346 RB5347 RB5347 RB5347 2764290 2764442 + hypothetical protein gene gene3007 http://www.ncbi.nlm.nih.gov/gene/?term=RB5347 RB5348 RB5348 RB5348 2764414 2765787 - transposase PMID: 11292750 best DB hits: BLAST: swissprot:P03835%3B YI41_ECOLI INSERTION ELEMENT IS4 HYPOTHETICAL%3B E%3D0.030 embl:CAA57483.1%3B (X81894) ORF [Enterobacter agglomerans]%3B E%3D0.064 COG: yi41%3B COG3385 Predicted transposase%3B E%3D0.003 gene gene3008 http://www.ncbi.nlm.nih.gov/gene/?term=RB5348 RB535 RB535 RB535 295255 295503 - hypothetical protein gene gene306 http://www.ncbi.nlm.nih.gov/gene/?term=RB535 RB5350 RB5350 RB5350 2765764 2765985 + hypothetical protein gene gene3009 http://www.ncbi.nlm.nih.gov/gene/?term=RB5350 RB5351 RB5351 RB5351 2766129 2766854 + hypothetical protein gene gene3010 http://www.ncbi.nlm.nih.gov/gene/?term=RB5351 RB5353 RB5353 RB5353 2766367 2767221 - signal peptide gene gene3011 http://www.ncbi.nlm.nih.gov/gene/?term=RB5353 RB5356 RB5356 RB5356 2767081 2768349 + hypothetical protein best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene3012 http://www.ncbi.nlm.nih.gov/gene/?term=RB5356 RB5359 RB5359 RB5359 2768429 2769349 + hypothetical protein gene gene3013 http://www.ncbi.nlm.nih.gov/gene/?term=RB5359 RB536 RB536 pdxJ pdxJ 295500 296285 - pyridoxine 5'-phosphate synthase involved in the de novo synthesis of pyridoxine (Vitamin B6) gene gene307 http://www.ncbi.nlm.nih.gov/gene/?term=RB536 RB5362 RB5362 RB5362 2769388 2769513 + hypothetical protein gene gene3014 http://www.ncbi.nlm.nih.gov/gene/?term=RB5362 RB5363 RB5363 RB5363 2769535 2770170 + flavodoxin PMID: 1991710 best DB hits: BLAST: swissprot:O67866%3B FLAV_AQUAE FLAVODOXIN ----- pir: F70479%3B E%3D3e-48 swissprot:P18855%3B FLAV_CLOAB FLAVODOXIN ----- pir: A38177%3B E%3D2e-13 pir:G82110%3B Trp repressor-binding protein VC2166 [imported] - Vibrio%3B E%3D6e-13 COG: aq_2096%3B COG0655 Multimeric flavodoxin WrbA%3B E%3D3e-49 AF1520%3B COG0426 Uncharacterized flavoproteins%3B E%3D0.006 PFAM: PF00258%3B Flavodoxin%3B E%3D1.4e-08 gene gene3015 http://www.ncbi.nlm.nih.gov/gene/?term=RB5363 RB5365 RB5365 RB5365 2770233 2771630 + NADH-dependent dehydrogenase best DB hits: BLAST: gb:AAC23913.1%3B (AF039207) NADH-dependent dehydrogenase homolog%3B E%3D4e-10 gb:AAC31181.1%3B (AF076240) unknown [Rhizobium leguminosarum bv.%3B E%3D2e-09 ddbj:BAB05884.1%3B (AP001514) BH2165~~unknown conserved protein%3B E%3D6e-09 COG: BH2165%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D5e-10 PFAM: PF01408%3B Oxidoreductase%2C NAD-bin%3B E%3D3.1e-15 gene gene3016 http://www.ncbi.nlm.nih.gov/gene/?term=RB5365 RB5367 RB5367 RB5367 2771651 2773393 - DNA recombinase PMID: 2105293 best DB hits: BLAST: gb:AAG60934.1%3B AF322013_53 (AF322013) ID556 [Bradyrhizobium%3B E%3D9e-68 gb:AAG60822.1%3B AF322012_127 (AF322013) ID270 [Bradyrhizobium%3B E%3D4e-67 swissprot:P17867%3B CISA_BACSU DNA RECOMBINASE -----%3B E%3D1e-30 COG: BS_spoIVCA%3B COG1961 Site-specific recombinases%2C DNA invertase Pin%3B E%3D1e-31 pin%3B COG1961 Site-specific recombinases%2C DNA invertase Pin homologs%3B E%3D4e-04 PH1174%3B COG1961 Site-specific recombinases%2C DNA invertase Pin%3B E%3D0.003 PFAM: PF00239%3B Resolvase class of site-specific re%3B E%3D4.3e-18 gene gene3017 http://www.ncbi.nlm.nih.gov/gene/?term=RB5367 RB5368 RB5368 RB5368 2773390 2773587 - hypothetical protein gene gene3018 http://www.ncbi.nlm.nih.gov/gene/?term=RB5368 RB5369 RB5369 RB5369 2773636 2773896 - hypothetical protein gene gene3019 http://www.ncbi.nlm.nih.gov/gene/?term=RB5369 RB537 RB537 RB537 296227 296457 + hypothetical protein gene gene308 http://www.ncbi.nlm.nih.gov/gene/?term=RB537 RB5370 RB5370 RB5370 2773897 2774826 - transposase PMID: 11759840 best DB hits: BLAST: embl:CAB93418.1%3B (AL357524) transposase [Streptomyces%3B E%3D0.60 gene gene3020 http://www.ncbi.nlm.nih.gov/gene/?term=RB5370 RB5371 RB5371 RB5371 2774829 2775158 + hypothetical protein gene gene3021 http://www.ncbi.nlm.nih.gov/gene/?term=RB5371 RB5373 RB5373 RB5373 2775270 2775404 - hypothetical protein gene gene3022 http://www.ncbi.nlm.nih.gov/gene/?term=RB5373 RB5374 RB5374 RB5374 2775439 2776053 - hypothetical protein best DB hits: PFAM: PF00515%3B TPR Domain%3B E%3D0.61 gene gene3023 http://www.ncbi.nlm.nih.gov/gene/?term=RB5374 RB5377 RB5377 RB5377 2776104 2776583 - signal peptide gene gene3024 http://www.ncbi.nlm.nih.gov/gene/?term=RB5377 RB5378 RB5378 RB5378 2776699 2778171 - aryl-sulphate sulphohydrolase PMID: 10336424 best DB hits: BLAST: ddbj:BAA04535.1%3B (D17629) N-acetylgalactosamine 6-sulfate%3B E%3D2e-36 gb:AAF63858.1%3B (AF112242) N-acetylgalactosamine-6-sulfate%3B E%3D2e-34 gb:AAF30402.1%3B AF109924_1 (AF109924) sulfatase 1 precursor [Helix%3B E%3D1e-33 COG: ydeN%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D1e-29 PFAM: PF02418%3B Integral membrane protein of unk%3B E%3D0.83 PF00884%3B Sulfatase%3B E%3D6.6e-32 gene gene3025 http://www.ncbi.nlm.nih.gov/gene/?term=RB5378 RB538 RB538 RB538 296509 297921 - hypothetical protein best DB hits: BLAST: pir:T34935%3B hypothetical protein SC3F9.13 SC3F9.13 - Streptomyces%3B E%3D2e-43 pir:T36186%3B hypothetical protein SCE29.07c - Streptomyces coelicolor%3B E%3D2e-37 gene gene309 http://www.ncbi.nlm.nih.gov/gene/?term=RB538 RB5380 RB5380 RB5380 2778338 2779759 - serine/threonine protein kinase PMID: 8063104 best DB hits: BLAST: pir:H69064%3B serinethreonine protein kinase related protein -%3B E%3D9e-06 swissprot:P54741%3B AFSK_STRCO SERINETHREONINE PROTEIN KINASE AFSK%3B E%3D0.007 swissprot:P54742%3B AFSK_STRGR SERINETHREONINE PROTEIN KINASE AFSK%3B E%3D0.007 COG: MTH1485%3B COG1520 Uncharacterized proteins of WD40-like repeat family%3B E%3D8e-07 PFAM: PF01011%3B PQQ enzyme repeat%3B E%3D0.0098 gene gene3026 http://www.ncbi.nlm.nih.gov/gene/?term=RB5380 RB5383 RB5383 RB5383 2779695 2781371 - sulfatase atsG PMID: 10950929 best DB hits: BLAST: pir:F70837%3B probable sulfatase (EC 3.1.6.-) atsG - Mycobacterium%3B E%3D8e-23 gb:AAG41945.1%3B AF304053_1 (AF304053) heparan N-sulfatase [Mus%3B E%3D1e-20 gb:AAF29467.1%3B (AF156255) N-sulfoglucosamine sulfohydrolase [Mus%3B E%3D2e-20 COG: Rv0296c%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D8e-24 PFAM: PF00884%3B Sulfatase%3B E%3D5.2e-13 gene gene3027 http://www.ncbi.nlm.nih.gov/gene/?term=RB5383 RB5385 RB5385 RB5385 2781546 2781656 - hypothetical protein gene gene3028 http://www.ncbi.nlm.nih.gov/gene/?term=RB5385 RB5387 RB5387 RB5387 2781669 2782331 - hypothetical protein gene gene3029 http://www.ncbi.nlm.nih.gov/gene/?term=RB5387 RB5389 RB5389 RB5389 2782443 2782853 - hypothetical protein gene gene3030 http://www.ncbi.nlm.nih.gov/gene/?term=RB5389 RB539 RB539 cinA cinA 298032 299390 + competence-damage inducible protein CinA PMID: 7538190 best DB hits: BLAST: gb:AAB47708.1%3B (U87792) CinA [Bacillus subtilis]%3B E%3D4e-36 swissprot:P46323%3B CINA_BACSU CINA-LIKE PROTEIN ----- pir:%3B E%3D3e-34 ddbj:BAB06104.1%3B (AP001515) competence-damage inducible protein%3B E%3D7e-33 COG: BS_cinA_1%3B COG1058 Predicted nucleotide-utilizing enzyme related to%3B E%3D2e-31 gene gene310 http://www.ncbi.nlm.nih.gov/gene/?term=RB539 RB5390 RB5390 RB5390 2782834 2782980 - hypothetical protein gene gene3031 http://www.ncbi.nlm.nih.gov/gene/?term=RB5390 RB5391 RB5391 RB5391 2782952 2783086 + hypothetical protein gene gene3032 http://www.ncbi.nlm.nih.gov/gene/?term=RB5391 RB5392 RB5392 tyrA tyrA 2783068 2784183 + prephenate dehydrogenase PMID: 3106153 best DB hits: BLAST: pir:A81199%3B prephenate dehydrogenase%2C probable NMB0440 [imported] -%3B E%3D2e-23 pir:A81775%3B probable oxidoreductase NMA2045 [imported] - Neisseria%3B E%3D6e-23 gb:AAF06694.1%3B AF163663_19 (AF058689) prephenate%3B E%3D3e-22 COG: NMB0440%3B COG0287 Prephenate dehydrogenase%3B E%3D2e-24 PFAM: PF02153%3B Prephenate dehydrogenase%3B E%3D5.3e-69 gene gene3033 http://www.ncbi.nlm.nih.gov/gene/?term=RB5392 RB5395 RB5395 purL purL 2784253 2787282 + phosphoribosylformylglycinamidine synthase II PMID: 2659070 PMID: 2531746 best DB hits: BLAST: gb:AAB89311.1%3B (AE000969) phosphoribosylformylglycinamidine%3B E%3D1e-113 embl:CAC12194.1%3B (AL445066) phosphoribosylformylglycinamidine%3B E%3D1e-102 embl:CAB56359.1%3B (AL118514) phosphoribosyl formylglycinamidine%3B E%3D1e-80 COG: AF1940%3B COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase%2C%3B E%3D1e-114 NMB1996_1%3B COG0046 Phosphoribosylformylglycinamidine (FGAM)%3B E%3D2e-52 TM1246%3B COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase%2C%3B E%3D1e-50 PFAM: PF00586%3B AIR synthase related protein%2C N-term%3B E%3D1e-24 PF02769%3B AIR synthase related protein%2C C-term%3B E%3D1.7e-22 PF00586%3B AIR synthase related protein%2C N-term%3B E%3D0.28 gene gene3034 http://www.ncbi.nlm.nih.gov/gene/?term=RB5395 RB5396 RB5396 RB5396 2787332 2787904 + hypothetical protein gene gene3035 http://www.ncbi.nlm.nih.gov/gene/?term=RB5396 RB5399 RB5399 RB5399 2788006 2789016 + signal peptide best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene3036 http://www.ncbi.nlm.nih.gov/gene/?term=RB5399 RB54 RB54 RB54 23873 24472 - signal peptide gene gene31 http://www.ncbi.nlm.nih.gov/gene/?term=RB54 RB5401 RB5401 RB5401 2789017 2790207 - hypothetical protein gene gene3037 http://www.ncbi.nlm.nih.gov/gene/?term=RB5401 RB5403 RB5403 RB5403 2790208 2790360 - hypothetical protein gene gene3038 http://www.ncbi.nlm.nih.gov/gene/?term=RB5403 RB5404 RB5404 RB5404 2790381 2791475 - hypothetical protein best DB hits: BLAST: embl:CAB76850.1%3B (AL049698) dJ470B24.1.3 (myeloidlymphoid or%3B E%3D0.73 embl:CAB76849.1%3B (AL049698) dJ470B24.1.5 (myeloidlymphoid or%3B E%3D0.78 gene gene3039 http://www.ncbi.nlm.nih.gov/gene/?term=RB5404 RB5405 RB5405 mthfs mthfs 2791576 2792193 - 5-formyltetrahydrofolate cyclo-ligase PMID: 8034591 PMID: 8522195 best DB hits: BLAST: ddbj:BAB05136.1%3B (AP001512) 5-formyltetrahydrofolate cyclo-ligase%3B E%3D7e-17 pir:C70449%3B conserved hypothetical protein aq_1731 - Aquifex%3B E%3D3e-16 swissprot:P54491%3B YQGN_BACSU HYPOTHETICAL 21.4 KD PROTEIN IN%3B E%3D8e-14 COG: BH1417%3B COG0212 5-formyltetrahydrofolate cyclo-ligase%3B E%3D7e-18 PFAM: PF01812%3B 5-formyltetrahydrofolate cyclo%3B E%3D1.4e-38 gene gene3040 http://www.ncbi.nlm.nih.gov/gene/?term=RB5405 RB5406 RB5406 RB5406 2792209 2793894 - carbohydrate kinase PMID: 1659648 best DB hits: BLAST: gb:AAF01486.1%3B AF137263_5 (AF137263) L-fuculose kinase%3B E%3D1e-84 ddbj:BAB05270.1%3B (AP001512) rhamnulokinase [Bacillus halodurans]%3B E%3D3e-79 pir:E70014%3B rhamnulokinase (EC 2.7.1.5) yulC - Bacillus subtilis%3B E%3D8e-75 COG: BH1551%3B COG1070 Sugar (pentulose and hexulose) kinases%3B E%3D2e-80 VNG1967G%3B COG0554 Glycerol kinase%3B E%3D2e-04 BH2676%3B COG1070 Sugar (pentulose and hexulose) kinases%3B E%3D0.004 PFAM: PF00370%3B FGGY family of carbohydrate kin%3B E%3D7.3e-12 PF02782%3B FGGY family of carbohydrate kin%3B E%3D0.11 gene gene3041 http://www.ncbi.nlm.nih.gov/gene/?term=RB5406 RB5407 RB5407 RB5407 2793914 2794132 + hypothetical protein gene gene3042 http://www.ncbi.nlm.nih.gov/gene/?term=RB5407 RB5409 RB5409 RB5409 2794195 2794488 + hypothetical protein gene gene3043 http://www.ncbi.nlm.nih.gov/gene/?term=RB5409 RB541 RB541 RB541 299365 299871 + signal peptide gene gene311 http://www.ncbi.nlm.nih.gov/gene/?term=RB541 RB5411 RB5411 RB5411 2794516 2794623 + hypothetical protein gene gene3044 http://www.ncbi.nlm.nih.gov/gene/?term=RB5411 RB5412 RB5412 RB5412 2794620 2794838 - hypothetical protein gene gene3045 http://www.ncbi.nlm.nih.gov/gene/?term=RB5412 RB5414 RB5414 rpoB rpoB 2794930 2798715 + DNA-directed RNA polymerase beta chain PMID: 6266829 best DB hits: BLAST: swissprot:Q9Z9A0%3B RPOB_CHLPN DNA-DIRECTED RNA POLYMERASE BETA CHAIN%3B E%3D0.0 pir:F81548%3B DNA-directed RNA polymerase%2C beta chain CP0694 [imported]%3B E%3D0.0 ddbj:BAA98291.1%3B (AP002545) RNA polymerase beta [Chlamydophila%3B E%3D0.0 COG: CPn0081%3B COG0085 DNA-directed RNA polymerase beta subunit/140 kD%3B E%3D0.0 CT315%3B COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit%3B E%3D0.0 PA4270%3B COG0085 DNA-directed RNA polymerase beta subunit/140 kD%3B E%3D0.0 PFAM: PF01155%3B Hydrogenase expression/synthesi%3B E%3D0.17 PF00562%3B RNA polymerase beta subunit%3B E%3D0 gene gene3046 http://www.ncbi.nlm.nih.gov/gene/?term=RB5414 RB5415 RB5415 RB5415 2798737 2798925 + hypothetical protein gene gene3047 http://www.ncbi.nlm.nih.gov/gene/?term=RB5415 RB5416 RB5416 rpoC rpoC 2798945 2803234 + DNA-directed RNA polymerase beta chain PMID: 3219133 best DB hits: BLAST: swissprot:P19176%3B RPOC_PSEPU DNA-DIRECTED RNA POLYMERASE BETA' CHAIN%3B E%3D0.0 swissprot:P00577%3B RPOC_ECOLI DNA-DIRECTED RNA POLYMERASE BETA' CHAIN%3B E%3D0.0 prf:0808241A%3B polymerase beta'%2CRNA [Escherichia coli]%3B E%3D0.0 COG: rpoC%3B COG0086 DNA-directed RNA polymerase beta' subunit/160 kD subunit%3B E%3D0.0 BU033%3B COG0086 DNA-directed RNA polymerase beta' subunit/160 kD%3B E%3D0.0 PFAM: PF00623%3B RNA polymerase alpha subunit%3B E%3D2.3e-275 PF01854%3B RNA polymerase A/beta'/A sub%3B E%3D8.5e-10 PF01333%3B Apocytochrome F%3B E%3D0.26 gene gene3048 http://www.ncbi.nlm.nih.gov/gene/?term=RB5416 RB5417 RB5417 RB5417 2803525 2804967 + N-acetylgalactosamine-6-sulfatase PMID: 2303452 best DB hits: BLAST: gb:AAF49287.1%3B (AE003522) CG7402 gene product [Drosophila%3B E%3D1e-37 gb:AAF30402.1%3B AF109924_1 (AF109924) sulfatase 1 precursor [Helix%3B E%3D2e-37 gb:AAF49302.1%3B (AE003522) CG5584 gene product [Drosophila%3B E%3D9e-37 COG: PA0183%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D2e-28 PFAM: PF00884%3B Sulfatase%3B E%3D1.5e-44 gene gene3049 http://www.ncbi.nlm.nih.gov/gene/?term=RB5417 RB5418 RB5418 RB5418 2804964 2805185 - signal peptide gene gene3050 http://www.ncbi.nlm.nih.gov/gene/?term=RB5418 RB5420 RB5420 RB5420 2805142 2805657 + hypothetical protein PMID: 11743193 best DB hits: PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D0.00066 gene gene3051 http://www.ncbi.nlm.nih.gov/gene/?term=RB5420 RB5421 RB5421 RB5421 2805590 2807302 + cycloinulo-oligosaccharide fructanotransferase PMID: 9406417 PMID: 11157277 best DB hits: BLAST: pir:T18266%3B cycloinulo-oligosaccharide fructanotransferase (EC%3B E%3D0.10 gb:AAG47946.1%3B AF222787_1 (AF222787) cycloinulo-oligosaccharide%3B E%3D0.22 gene gene3052 http://www.ncbi.nlm.nih.gov/gene/?term=RB5421 RB5424 RB5424 RB5424 2807339 2809060 + iduronate-2-sulfatase PMID: 8244397 best DB hits: BLAST: gb:AAA16877.1%3B (L13329) iduronate-2-sulfatase [Homo sapiens]%3B E%3D5e-57 gb:AAB33747.1%3B iduronate-2-sulfatase%2C IDS {EC 3.1.6.13} [human%2C%3B E%3D2e-56 gb:AAA37880.1%3B (L07921) iduronate sulfatase [Mus musculus]%3B E%3D5e-54 COG: PA0031%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D1e-30 PA0924%3B COG3083 Predicted hydrolase of alkaline phosphatase%3B E%3D9e-05 BS_yfnI%3B COG1368 Phosphoglycerol transferase and related proteins%2C%3B E%3D0.001 PFAM: PF00884%3B Sulfatase%3B E%3D2.6e-28 PF02418%3B Integral membrane protein of unknow%3B E%3D0.71 PF00884%3B Sulfatase%3B E%3D3.1e-27 gene gene3053 http://www.ncbi.nlm.nih.gov/gene/?term=RB5424 RB5426 RB5426 RB5426 2809030 2811849 + hypothetical protein gene gene3054 http://www.ncbi.nlm.nih.gov/gene/?term=RB5426 RB5428 RB5428 RB5428 2811866 2813368 + hypothetical protein gene gene3055 http://www.ncbi.nlm.nih.gov/gene/?term=RB5428 RB5429 RB5429 RB5429 2813478 2814860 - hypothetical protein PMID: 10360571 best DB hits: BLAST: pir:D72313%3B hypothetical protein TM0945 - Thermotoga maritima%3B E%3D2e-46 pir:D82689%3B conserved hypothetical protein XF1384 [imported] -%3B E%3D4e-22 gb:AAF04097.1%3B AF188291_3 (AF188291) PqaA [Salmonella typhi]%3B E%3D2e-17 gene gene3056 http://www.ncbi.nlm.nih.gov/gene/?term=RB5429 RB543 RB543 RB543 299822 300022 + hypothetical protein gene gene312 http://www.ncbi.nlm.nih.gov/gene/?term=RB543 RB5430 RB5430 RB5430 2814809 2814997 - hypothetical protein best DB hits: PFAM: PF02822%3B Antistasin family%3B E%3D0.39 gene gene3057 http://www.ncbi.nlm.nih.gov/gene/?term=RB5430 RB5432 RB5432 RB5432 2815149 2815646 + hypothetical protein PMID: 10360571 best DB hits: BLAST: pir:A72342%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D9e-41 pir:H70472%3B conserved hypothetical protein aq_2013 - Aquifex%3B E%3D2e-30 pir:B71118%3B hypothetical protein PH0713 - Pyrococcus horikoshii%3B E%3D2e-16 COG: TM0723%3B COG0432 Uncharacterized ACR%3B E%3D9e-42 PFAM: PF01894%3B Uncharacterised protein family UPF00%3B E%3D9.2e-38 gene gene3058 http://www.ncbi.nlm.nih.gov/gene/?term=RB5432 RB5433 RB5433 RB5433 2815643 2815819 + hypothetical protein gene gene3059 http://www.ncbi.nlm.nih.gov/gene/?term=RB5433 RB5434 RB5434 fusA fusA 2815776 2817863 - elongation factor G EF-G%3B promotes GTP-dependent translocation of the ribosome during translation%3B many organisms have multiple copies of this gene gene gene3060 http://www.ncbi.nlm.nih.gov/gene/?term=RB5434 RB5435 RB5435 RB5435 2817808 2818044 + signal peptide gene gene3061 http://www.ncbi.nlm.nih.gov/gene/?term=RB5435 RB5437 RB5437 pnp pnp 2818164 2819081 + purine nucleoside phosphorylase catalyzes the formation of a purine and ribose phosphate from a purine nucleoside%3B in E. coli this enzyme functions in xanthosine degradation gene gene3062 http://www.ncbi.nlm.nih.gov/gene/?term=RB5437 RB5439 RB5439 fwdC fwdC 2819062 2819814 + tungsten formylmethanofuran dehydrogenase%2C subunit C-like protein PMID: 8575452 best DB hits: BLAST: swissprot:O87391%3B GLXC_RHIME GLXC PROTEIN ----- gb: AAC62221.1%3B E%3D1e-15 pir:C69123%3B tungsten formylmethanofuran dehydrogenase%2C subunit C%3B E%3D7e-13 swissprot:Q58571%3B FWDC_METJA TUNGSTEN-CONTAINING%3B E%3D1e-11 COG: MTH192%3B COG0070 Glutamate synthetase domain 3%3B E%3D7e-14 MJ1171%3B COG2218 Formylmethanofuran dehydrogenase subunit C%3B E%3D1e-12 MJ1350%3B COG0070 Glutamate synthetase domain 3%3B E%3D5e-08 PFAM: PF01493%3B Domain of unknown function DUF14%3B E%3D2.1e-09 gene gene3063 http://www.ncbi.nlm.nih.gov/gene/?term=RB5439 RB544 RB544 RB544 300059 302806 + hypothetical protein best DB hits: PFAM: PF01239%3B Protein prenyltransferase alpha subu%3B E%3D0.28 gene gene313 http://www.ncbi.nlm.nih.gov/gene/?term=RB544 RB5442 RB5442 RB5442 2819950 2821104 - hypothetical protein gene gene3064 http://www.ncbi.nlm.nih.gov/gene/?term=RB5442 RB5444 RB5444 metK metK 2821246 2822433 + S-adenosylmethionine synthetase catalyzes the formation of S-adenosylmethionine from methionine and ATP%3B methionine adenosyltransferase gene gene3065 http://www.ncbi.nlm.nih.gov/gene/?term=RB5444 RB5445 RB5445 RB5445 2822354 2823322 + 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase PMID: 8260624 best DB hits: BLAST: embl:CAB08432.1%3B (Z95151) Icc [Mycobacterium leprae]%3B E%3D0.062 pir:S44374%3B phosphoglycerate mutase (EC 5.4.2.1) - castor bean%3B E%3D0.20 swissprot:Q42908%3B PMGI_MESCR 2%2C3-BISPHOSPHOGLYCERATE-INDEPENDENT%3B E%3D0.22 gene gene3066 http://www.ncbi.nlm.nih.gov/gene/?term=RB5445 RB5447 RB5447 RB5447 2823580 2823756 + hypothetical protein gene gene3068 http://www.ncbi.nlm.nih.gov/gene/?term=RB5447 RB5448 RB5448 RB5448 2823795 2824412 - hypothetical protein gene gene3069 http://www.ncbi.nlm.nih.gov/gene/?term=RB5448 RB5449 RB5449 RB5449 2824383 2824532 + hypothetical protein gene gene3070 http://www.ncbi.nlm.nih.gov/gene/?term=RB5449 RB5450 RB5450 RB5450 2824513 2824635 + hypothetical protein gene gene3071 http://www.ncbi.nlm.nih.gov/gene/?term=RB5450 RB5451 RB5451 RB5451 2824632 2825756 + hypothetical protein best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene3072 http://www.ncbi.nlm.nih.gov/gene/?term=RB5451 RB5454 RB5454 RB5454 2825855 2826199 - hypothetical protein gene gene3073 http://www.ncbi.nlm.nih.gov/gene/?term=RB5454 RB5455 RB5455 RB5455 2826045 2826395 + hypothetical protein gene gene3074 http://www.ncbi.nlm.nih.gov/gene/?term=RB5455 RB5456 RB5456 RB5456 2826426 2826983 - signal peptide gene gene3075 http://www.ncbi.nlm.nih.gov/gene/?term=RB5456 RB5457 RB5457 RB5457 2827115 2827360 + hypothetical protein gene gene3076 http://www.ncbi.nlm.nih.gov/gene/?term=RB5457 RB5458 RB5458 RB5458 2827385 2827831 + signal peptide gene gene3077 http://www.ncbi.nlm.nih.gov/gene/?term=RB5458 RB546 RB546 RB546 302834 304291 + hypothetical protein gene gene314 http://www.ncbi.nlm.nih.gov/gene/?term=RB546 RB5460 RB5460 RB5460 2827930 2828544 - signal peptide gene gene3078 http://www.ncbi.nlm.nih.gov/gene/?term=RB5460 RB5462 RB5462 RB5462 2828717 2829001 - hypothetical protein gene gene3079 http://www.ncbi.nlm.nih.gov/gene/?term=RB5462 RB5464 RB5464 RB5464 2829125 2829445 + hypothetical protein gene gene3080 http://www.ncbi.nlm.nih.gov/gene/?term=RB5464 RB5465 RB5465 RB5465 2829449 2830423 + two-component response regulator PMID: 7699720 best DB hits: BLAST: pir:D83041%3B probable two-component response regulator PA4843%3B E%3D4e-20 pir:F82960%3B hypothetical protein PA5487 [imported] - Pseudomonas%3B E%3D5e-18 pir:A82428%3B sensory boxGGDEF family protein VCA0697 [imported] -%3B E%3D4e-17 COG: PA5487%3B COG2199 Diguanylate cyclase/phosphodiesterase domain 1%3B E%3D5e-19 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D3.1e-13 PF00990%3B GGDEF domain%3B E%3D3.1e-35 gene gene3081 http://www.ncbi.nlm.nih.gov/gene/?term=RB5465 RB5466 RB5466 RB5466 2830396 2830512 + hypothetical protein gene gene3082 http://www.ncbi.nlm.nih.gov/gene/?term=RB5466 RB5468 RB5468 RB5468 2830492 2831490 - signal peptide PMID: 10567266 best DB hits: PFAM: PF00561%3B alpha/beta hydrolase fold%3B E%3D0.1 gene gene3083 http://www.ncbi.nlm.nih.gov/gene/?term=RB5468 RB5471 RB5471 RB5471 2831653 2832027 - sensory transduction system regulatory protein PMID: 1645442 best DB hits: BLAST: pir:S75664%3B sensory transduction system regulatory protein slr1983 -%3B E%3D8e-04 pir:G83183%3B probable chemotaxis sensoreffector fusion protein%3B E%3D0.002 pir:D82696%3B hypothetical protein XF1330 [imported] - Xylella%3B E%3D0.005 COG: slr1983_2%3B COG0784 CheY-like receiver domains%3B E%3D8e-05 jhp1283%3B COG0745 Response regulators consisting of a CheY-like%3B E%3D8e-04 BS_yufM%3B COG2197 Response regulators consisting of a CheY-like%3B E%3D0.002 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D9.9e-06 gene gene3084 http://www.ncbi.nlm.nih.gov/gene/?term=RB5471 RB5472 RB5472 RB5472 2832015 2832428 - two-component system response regulator PMID: 1454550 best DB hits: BLAST: embl:CAB94653.1%3B (AL359215) two-component system%3B E%3D3e-12 pir:D72374%3B response regulator - Thermotoga maritima (strain MSB8)%3B E%3D2e-11 embl:CAC04498.1%3B (AL391588) two-component system%3B E%3D5e-11 COG: TM0468%3B COG0784 CheY-like receiver domains%3B E%3D2e-12 BS_phoP%3B COG0745 Response regulators consisting of a CheY-like%3B E%3D3e-11 slr0322_3%3B COG0784 CheY-like receiver domains%3B E%3D3e-10 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D9.1e-23 gene gene3085 http://www.ncbi.nlm.nih.gov/gene/?term=RB5472 RB5474 RB5474 RB5474 2832627 2832782 + hypothetical protein gene gene3086 http://www.ncbi.nlm.nih.gov/gene/?term=RB5474 RB5475 RB5475 RB5475 2832768 2833076 - hypothetical protein gene gene3087 http://www.ncbi.nlm.nih.gov/gene/?term=RB5475 RB5476 RB5476 RB5476 2833159 2833284 - hypothetical protein gene gene3088 http://www.ncbi.nlm.nih.gov/gene/?term=RB5476 RB5477 RB5477 RB5477 2833363 2833992 - two component system response regulator PMID: 1454550 best DB hits: BLAST: pir:T17197%3B adenylate cyclase homolog - Spirulina platensis -----%3B E%3D2e-09 gb:AAD30120.2%3B (AF135389) DNA binding response regulator RpaA%3B E%3D2e-08 pir:S75923%3B sensory transduction system regulatory protein sll1555 -%3B E%3D4e-08 COG: slr2024%3B COG0784 CheY-like receiver domains%3B E%3D9e-09 slr0115%3B COG0745 Response regulators consisting of a CheY-like%3B E%3D1e-08 TP0519%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D2e-08 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D2.4e-10 gene gene3089 http://www.ncbi.nlm.nih.gov/gene/?term=RB5477 RB5478 RB5478 RB5478 2834064 2834459 - two-component system response regulator PMID: 7699720 best DB hits: BLAST: embl:CAB88489.1%3B (AL353816) two-component systen%3B E%3D1e-15 gb:AAB06615.1%3B (U53173) MviA [Salmonella typhimurium]%3B E%3D2e-14 gb:AAD30120.2%3B (AF135389) DNA binding response regulator RpaA%3B E%3D1e-13 COG: slr0115%3B COG0745 Response regulators consisting of a CheY-like%3B E%3D1e-13 XF1952_3%3B COG0784 CheY-like receiver domains%3B E%3D3e-13 Rv0981%3B COG0745 Response regulators consisting of a CheY-like%3B E%3D3e-12 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D2.4e-27 gene gene3090 http://www.ncbi.nlm.nih.gov/gene/?term=RB5478 RB5479 RB5479 RB5479 2834555 2836279 - sensory transduction histidine kinase PMID: 3142862 best DB hits: BLAST: swissprot:P23545%3B PHOR_BACSU ALKALINE PHOSPHATASE SYNTHESIS SENSOR%3B E%3D1e-28 pir:S75514%3B sensory transduction histidine kinase slr1324 -%3B E%3D2e-27 pir:E83529%3B sensorresponse regulator hybrid PA0928 [imported] -%3B E%3D6e-25 COG: BS_phoR_3%3B COG0642 Sensory transduction histidine kinases%3B E%3D1e-29 PFAM: PF00072%3B Response regulator receiver do%3B E%3D4.5e-14 PF00512%3B His Kinase A (phosphoacceptor)%3B E%3D6.3e-16 PF02518%3B Histidine kinase-%2C DNA gyrase%3B E%3D5.3e-31 gene gene3091 http://www.ncbi.nlm.nih.gov/gene/?term=RB5479 RB548 RB548 glgB glgB 304329 306230 - 1%2C4-alpha-glucan-branching protein PMID: 8068720 PMID: 3013861 best DB hits: BLAST: swissprot:P52980%3B GLGB_STRAU 1%2C4-ALPHA-GLUCAN BRANCHING ENZYME%3B E%3D2e-46 swissprot:P30537%3B GLGB_BACCL 1%2C4-ALPHA-GLUCAN BRANCHING ENZYME%3B E%3D7e-45 pir:D82511%3B 1%2C4-alpha-glucan branching enzyme VCA0016 [imported] -%3B E%3D1e-44 COG: VCA0016%3B COG0296 1%2C4-alpha-glucan branching enzyme%3B E%3D1e-45 BS_amyX%3B COG1523 Pullulanase and related glycosidases%3B E%3D2e-21 YEL011w%3B COG0296 1%2C4-alpha-glucan branching enzyme%3B E%3D3e-20 PFAM: PF02922%3B Isoamylase N-terminal domain%3B E%3D2.3e-15 PF01208%3B Uroporphyrinogen decarboxylas%3B E%3D0.27 PF00128%3B Alpha amylase%2C catalytic doma%3B E%3D2.5e-11 gene gene315 http://www.ncbi.nlm.nih.gov/gene/?term=RB548 RB5482 RB5482 RB5482 2836143 2836799 - response regulator PMID: 7699720 best DB hits: BLAST: ddbj:BAA14000.1%3B (D89625) adenylate cyclase [Anabaena sp.]%3B E%3D2e-12 pir:T17197%3B adenylate cyclase homolog - Spirulina platensis -----%3B E%3D8e-12 gb:AAB89775.1%3B (AE001001) response regulator [Archaeoglobus%3B E%3D7e-10 COG: AF1473%3B COG0784 CheY-like receiver domains%3B E%3D7e-11 slr0115%3B COG0745 Response regulators consisting of a CheY-like%3B E%3D2e-10 sll1555_1%3B COG0784 CheY-like receiver domains%3B E%3D6e-10 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D2.3e-16 gene gene3092 http://www.ncbi.nlm.nih.gov/gene/?term=RB5482 RB5485 RB5485 RB5485 2836850 2837047 - hypothetical protein gene gene3093 http://www.ncbi.nlm.nih.gov/gene/?term=RB5485 RB5486 RB5486 RB5486 2837058 2838266 + activated protein kinase C receptor-like protein PMID: 10200516 best DB hits: BLAST: swissprot:Q94775%3B GBLP_TRYBB GUANINE NUCLEOTIDE-BINDING PROTEIN%3B E%3D0.14 pir:T47324%3B hypothetical protein T12K4.110 - Arabidopsis thaliana%3B E%3D0.29 gb:AAC72849.1%3B (AF100286) activated protein kinase C receptor%3B E%3D0.58 PFAM: PF00400%3B WD domain%2C G-beta repeat%3B E%3D0.0071 gene gene3094 http://www.ncbi.nlm.nih.gov/gene/?term=RB5486 RB549 RB549 RB549 306211 306324 - hypothetical protein gene gene316 http://www.ncbi.nlm.nih.gov/gene/?term=RB549 RB5490 RB5490 RB5490 2838414 2841692 - multidrug resistance protein best DB hits: BLAST: pir:F82263%3B probable multidrug resistance protein VC0914 [imported] -%3B E%3D1e-47 pir:H82300%3B probable multidrug resistance protein VC0629 [imported] -%3B E%3D6e-47 pir:F71727%3B acriflavin resistance protein D (acrD) RP170 - Rickettsia%3B E%3D3e-45 COG: VC0914%3B COG0841 Cation/multidrug efflux pump%3B E%3D1e-48 PFAM: PF00873%3B AcrB/AcrD/AcrF family%3B E%3D1.8e-14 gene gene3095 http://www.ncbi.nlm.nih.gov/gene/?term=RB5490 RB5495 RB5495 RB5495 2841689 2843398 - multidrug resistance efflux pump best DB hits: BLAST: pir:A83342%3B conserved hypothetical protein PA2430 [imported] -%3B E%3D4e-07 swissprot:P32716%3B YJCR_ECOLI HYPOTHETICAL 36.9 KDA PROTEIN IN%3B E%3D2e-05 gb:AAG59280.1%3B AE005641_5 (AE005641) membrane protein%3B E%3D2e-05 COG: PA2430%3B COG1566 Multidrug resistance efflux pump%3B E%3D4e-08 HIN0311%3B COG0845 Membrane-fusion protein%3B E%3D0.002 PFAM: PF00529%3B HlyD family secretion protein%3B E%3D0.00042 gene gene3096 http://www.ncbi.nlm.nih.gov/gene/?term=RB5495 RB5498 RB5498 RB5498 2843397 2843672 + hypothetical protein gene gene3097 http://www.ncbi.nlm.nih.gov/gene/?term=RB5498 RB5499 RB5499 RB5499 2843655 2844998 - hypothetical protein best DB hits: BLAST: ddbj:BAB07052.1%3B (AP001518) BH3333~~unknown conserved protein in%3B E%3D8e-21 embl:CAC10313.1%3B (AL442629) hypothetical protein SCH63.22c%3B E%3D0.76 gene gene3098 http://www.ncbi.nlm.nih.gov/gene/?term=RB5499 RB550 RB550 RB550 306296 306709 - signal peptide gene gene317 http://www.ncbi.nlm.nih.gov/gene/?term=RB550 RB5500 RB5500 RB5500 2845019 2845759 - hypothetical protein PMID: 9665876 best DB hits: BLAST: swissprot:O83487%3B Y474_TREPA HYPOTHETICAL PROTEIN TP0474 -----%3B E%3D5e-54 swissprot:Q51423%3B Y964_PSEAE HYPOTHETICAL PROTEIN PA0964 -----%3B E%3D2e-53 swissprot:O67517%3B YF75_AQUAE HYPOTHETICAL PROTEIN AQ_1575 -----%3B E%3D5e-53 COG: TP0474%3B COG0217 Uncharacterized ACR%3B E%3D4e-55 PFAM: PF01709%3B Domain of unknown function DUF28%3B E%3D8e-105 gene gene3099 http://www.ncbi.nlm.nih.gov/gene/?term=RB5500 RB5501 RB5501 RB5501 2845843 2847141 - hypothetical protein gene gene3100 http://www.ncbi.nlm.nih.gov/gene/?term=RB5501 RB5502 RB5502 RB5502 2845859 2846293 + hypothetical protein gene gene3101 http://www.ncbi.nlm.nih.gov/gene/?term=RB5502 RB5503 RB5503 rbfA rbfA 2847155 2847568 - ribosome-binding factor A PMID: 7535280 PMID: 9422595 best DB hits: BLAST: ddbj:BAB06130.1%3B (AP001515) ribosome-binding factor A [Bacillus%3B E%3D4e-13 swissprot:P32731%3B RBFA_BACSU RIBOSOME-BINDING FACTOR A (P15B%3B E%3D2e-11 swissprot:Q55625%3B RBFA_SYNY3 RIBOSOME-BINDING FACTOR A -----%3B E%3D2e-09 COG: BH2411%3B COG0858 Ribosome-binding factor A%3B E%3D4e-14 PFAM: PF02033%3B Ribosome-binding factor A%3B E%3D1.7e-28 gene gene3102 http://www.ncbi.nlm.nih.gov/gene/?term=RB5503 RB5504 RB5504 infB infB 2847721 2850837 - translation initiation factor IF-2 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex gene gene3103 http://www.ncbi.nlm.nih.gov/gene/?term=RB5504 RB5505 RB5505 RB5505 2850866 2851087 + hypothetical protein gene gene3104 http://www.ncbi.nlm.nih.gov/gene/?term=RB5505 RB5506 RB5506 RB5506 2850947 2851102 - hypothetical protein gene gene3105 http://www.ncbi.nlm.nih.gov/gene/?term=RB5506 RB5507 RB5507 nusA nusA 2851099 2852595 - transcription elongation factor NusA modifies transcription through interactions with RNA polymerase affecting elongation%2C readthrough%2C termination%2C and antitermination gene gene3106 http://www.ncbi.nlm.nih.gov/gene/?term=RB5507 RB5508 RB5508 RB5508 2852546 2852710 - hypothetical protein gene gene3107 http://www.ncbi.nlm.nih.gov/gene/?term=RB5508 RB5509 RB5509 RB5509 2852723 2854117 - hypothetical protein gene gene3108 http://www.ncbi.nlm.nih.gov/gene/?term=RB5509 RB5511 RB5511 RB5511 2854114 2855727 - hypothetical protein best DB hits: BLAST: ddbj:BAA77335.1%3B (AB019494) IDN3 [Homo sapiens]%3B E%3D0.21 ddbj:BAA77349.1%3B (AB019602) IDN3-B [Homo sapiens]%3B E%3D0.21 gene gene3109 http://www.ncbi.nlm.nih.gov/gene/?term=RB5511 RB5513 RB5513 gspK gspK 2855743 2857647 - general secretion pathway protein K PMID: 8407845 best DB hits: BLAST: gb:AAC70108.1%3B (AF074613) type II secretion protein [Escherichia%3B E%3D2e-06 swissprot:P34026%3B GSPK_XANCP GENERAL SECRETION PATHWAY PROTEIN K%3B E%3D5e-04 swissprot:P31706%3B GSPK_ERWCA GENERAL SECRETION PATHWAY PROTEIN K%3B E%3D0.002 COG: XF1523%3B COG3156 General secretion pathway protein K%3B E%3D2e-04 gene gene3110 http://www.ncbi.nlm.nih.gov/gene/?term=RB5513 RB5514 RB5514 RB5514 2857532 2858641 - hypothetical protein gene gene3111 http://www.ncbi.nlm.nih.gov/gene/?term=RB5514 RB5515 RB5515 RB5515 2858616 2859134 - signal peptide PMID: 12024217 gene gene3112 http://www.ncbi.nlm.nih.gov/gene/?term=RB5515 RB5516 RB5516 RB5516 2859131 2859862 - signal peptide best DB hits: PFAM: PF02501%3B Bacterial type II secretion system p%3B E%3D0.08 gene gene3113 http://www.ncbi.nlm.nih.gov/gene/?term=RB5516 RB5519 RB5519 gspG gspG 2859868 2860344 - general secretion pathway protein G PMID: 1640836 PMID: 8407845 best DB hits: BLAST: pir:B70338%3B general secretion pathway protein G - Aquifex aeolicus%3B E%3D0.065 swissprot:P31733%3B GSPG_AERHY GENERAL SECRETION PATHWAY PROTEIN G%3B E%3D0.29 pir:B82670%3B general secretory pathway protein G precursor XF1519%3B E%3D0.83 COG: aq_418%3B COG2165 General secretory pathway proteins G and H and%3B E%3D0.006 gene gene3114 http://www.ncbi.nlm.nih.gov/gene/?term=RB5519 RB5522 RB5522 RB5522 2860331 2860696 - hypothetical protein gene gene3115 http://www.ncbi.nlm.nih.gov/gene/?term=RB5522 RB5523 RB5523 RB5523 2860709 2860984 - hypothetical protein gene gene3116 http://www.ncbi.nlm.nih.gov/gene/?term=RB5523 RB5524 RB5524 RB5524 2860924 2882595 + hypothetical protein PMID: 11759840 best DB hits: BLAST: embl:CAC19834.1%3B (AJ401093) hypothetical protein [Actinomyces%3B E%3D0.17 gene gene3117 http://www.ncbi.nlm.nih.gov/gene/?term=RB5524 RB5540 RB5540 RB5540 2882665 2883432 + hypothetical protein PMID: 8760912 best DB hits: BLAST: swissprot:P42981%3B YPJG_BACSU HYPOTHETICAL 24.8 KD PROTEIN IN%3B E%3D9e-17 ddbj:BAB05401.1%3B (AP001512) BH1682~~unknown conserved protein%3B E%3D2e-15 gb:AAC14880.1%3B (AF060080) hypothetical protein [Chlorobium%3B E%3D6e-15 COG: BS_ypjG%3B COG2120 Uncharacterized proteins%2C LmbE homologs%3B E%3D9e-18 PFAM: PF02585%3B Uncharacterized LmbE-like protein%2C C%3B E%3D2.5e-20 gene gene3118 http://www.ncbi.nlm.nih.gov/gene/?term=RB5540 RB5542 RB5542 RB5542 2883410 2883577 - hypothetical protein gene gene3119 http://www.ncbi.nlm.nih.gov/gene/?term=RB5542 RB5543 RB5543 metG metG 2883586 2885625 + methionyl-tRNA synthetase methionine--tRNA ligase%3B MetRS%3B adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate%3B some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not%3B four subfamilies exist based on sequence motifs and zinc content gene gene3120 http://www.ncbi.nlm.nih.gov/gene/?term=RB5543 RB5544 RB5544 RB5544 2885702 2886013 - hypothetical protein gene gene3121 http://www.ncbi.nlm.nih.gov/gene/?term=RB5544 RB5545 RB5545 RB5545 2885758 2886006 - hypothetical protein gene gene3122 http://www.ncbi.nlm.nih.gov/gene/?term=RB5545 RB5546 RB5546 RB5546 2885978 2887570 + hypothetical protein gene gene3123 http://www.ncbi.nlm.nih.gov/gene/?term=RB5546 RB5547 RB5547 RB5547 2887576 2888748 - hypothetical protein gene gene3124 http://www.ncbi.nlm.nih.gov/gene/?term=RB5547 RB5548 RB5548 RB5548 2887747 2888790 + hypothetical protein gene gene3125 http://www.ncbi.nlm.nih.gov/gene/?term=RB5548 RB5549 RB5549 RB5549 2888747 2889034 + hypothetical protein gene gene3126 http://www.ncbi.nlm.nih.gov/gene/?term=RB5549 RB555 RB555 RB555 306967 308226 + ECF subfamily RNA polymerase sigma-70 factor PMID: 10984043 best DB hits: BLAST: pir:G83477%3B probable sigma-70 factor%2C ECF subfamily PA1351%3B E%3D1e-94 swissprot:Q52997%3B YDNY_RHIME HYPOTHETICAL 47.0 KDA PROTEIN IN DNAA%3B E%3D9e-61 pir:T35586%3B hypothetical protein SC6G4.35 SC6G4.35 - Streptomyces%3B E%3D3e-52 COG: PA1351_1%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D5e-39 PFAM: PF00515%3B TPR Domain%3B E%3D0.00013 gene gene318 http://www.ncbi.nlm.nih.gov/gene/?term=RB555 RB5550 RB5550 RB5550 2888787 2889104 + hypothetical protein gene gene3127 http://www.ncbi.nlm.nih.gov/gene/?term=RB5550 RB5551 RB5551 RB5551 2889101 2891092 + hypothetical protein gene gene3128 http://www.ncbi.nlm.nih.gov/gene/?term=RB5551 RB5554 RB5554 RB5554 2891141 2891305 + hypothetical protein gene gene3129 http://www.ncbi.nlm.nih.gov/gene/?term=RB5554 RB5555 RB5555 RB5555 2891274 2891438 + hypothetical protein gene gene3130 http://www.ncbi.nlm.nih.gov/gene/?term=RB5555 RB5557 RB5557 RB5557 2891491 2892735 + dehydrogenase PMID: 2549854 best DB hits: BLAST: pir:H69064%3B serinethreonine protein kinase related protein -%3B E%3D0.002 pir:T29127%3B hypothetical protein SC1F2.18 - Streptomyces coelicolor%3B E%3D0.015 gb:AAG57622.1%3B AE005480_9 (AE005480) dehydrogenase%3B E%3D0.63 COG: MTH1485%3B COG1520 Uncharacterized proteins of WD40-like repeat family%3B E%3D2e-04 PFAM: PF01011%3B PQQ enzyme repeat%3B E%3D0.49 gene gene3131 http://www.ncbi.nlm.nih.gov/gene/?term=RB5557 RB5559 RB5559 RB5559 2892853 2893341 + signal peptide gene gene3132 http://www.ncbi.nlm.nih.gov/gene/?term=RB5559 RB556 RB556 RB556 308213 308356 + hypothetical protein gene gene319 http://www.ncbi.nlm.nih.gov/gene/?term=RB556 RB5560 RB5560 trpA trpA 2893360 2894241 + tryptophan synthase subunit alpha PMID: 4863752 PMID: 7038627 best DB hits: BLAST: swissprot:P77960%3B TRPA_SYNY3 TRYPTOPHAN SYNTHASE ALPHA CHAIN%3B E%3D1e-45 swissprot:P11081%3B TRPA_PSEPU TRYPTOPHAN SYNTHASE ALPHA CHAIN%3B E%3D6e-43 swissprot:P07344%3B TRPA_PSEAE TRYPTOPHAN SYNTHASE ALPHA CHAIN%3B E%3D4e-42 COG: slr0966%3B COG0159 Tryptophan synthase alpha chain%3B E%3D1e-46 PFAM: PF00290%3B Tryptophan synthase alpha chain%3B E%3D3.2e-73 gene gene3133 http://www.ncbi.nlm.nih.gov/gene/?term=RB5560 RB5561 RB5561 RB5561 2894212 2894349 - hypothetical protein gene gene3134 http://www.ncbi.nlm.nih.gov/gene/?term=RB5561 RB5562 RB5562 RB5562 2894328 2895203 - hypothetical protein best DB hits: BLAST: gb:AAG37030.1%3B (AF288409) transcription elongation regulator%3B E%3D0.076 gb:AAK00309.1%3B AF315819_1 (AF315819) DNA-dependent RNA polymerase II%3B E%3D0.25 embl:CAA73326.1%3B (Y12790) Supt5h protein [Homo sapiens] -----%3B E%3D0.26 gene gene3135 http://www.ncbi.nlm.nih.gov/gene/?term=RB5562 RB5566 RB5566 ftsH ftsH 2895383 2897569 - cell division protein FtsH PMID: 8444796 best DB hits: BLAST: swissprot:P73437%3B FTH3_SYNY3 CELL DIVISION PROTEIN FTSH HOMOLOG 3%3B E%3D1e-129 pir:T31466%3B cell-division protein homolog ftsH - Heliobacillus%3B E%3D1e-127 pir:F83053%3B cell division protein FtsH PA4751 [imported] -%3B E%3D1e-123 COG: sll1463%3B COG0465 ATP-dependent Zn proteases%3B E%3D1e-130 PFAM: PF00158%3B Sigma-54 interaction domain%3B E%3D0.092 PF01057%3B Parvovirus non-structural pro%3B E%3D0.014 PF00910%3B RNA helicase%3B E%3D0.31 gene gene3136 http://www.ncbi.nlm.nih.gov/gene/?term=RB5566 RB5567 RB5567 RB5567 2897566 2897766 - hypothetical protein gene gene3137 http://www.ncbi.nlm.nih.gov/gene/?term=RB5567 RB5568 RB5568 dxr dxr 2897715 2899184 + 1-deoxy-D-xylulose-5-phosphate reductoisomerase catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate gene gene3138 http://www.ncbi.nlm.nih.gov/gene/?term=RB5568 RB557 RB557 RB557 308223 308384 + hypothetical protein gene gene320 http://www.ncbi.nlm.nih.gov/gene/?term=RB557 RB5571 RB5571 RB5571 2899223 2901454 + metalloproteinase best DB hits: BLAST: pir:H81228%3B conserved hypothetical protein NMB0183 [imported] -%3B E%3D9e-16 pir:C82000%3B probable integral membrane protein NMA0084 [imported] -%3B E%3D1e-15 pir:C69881%3B conserved hypothetical protein yluC - Bacillus subtilis%3B E%3D7e-15 COG: NMB0183%3B COG0750 Predicted membrane-associated Zn-dependent%3B E%3D9e-17 HI0918%3B COG0750 Predicted membrane-associated Zn-dependent proteases%3B E%3D2e-15 yaeL%3B COG0750 Predicted membrane-associated Zn-dependent proteases 1%3B E%3D3e-13 PFAM: PF02163%3B Sterol-regulatory element bindi%3B E%3D0.03 PF00595%3B PDZ domain (Also known as DHR o%3B E%3D0.0064 gene gene3139 http://www.ncbi.nlm.nih.gov/gene/?term=RB5571 RB5572 RB5572 RB5572 2901499 2901618 - hypothetical protein gene gene3140 http://www.ncbi.nlm.nih.gov/gene/?term=RB5572 RB5573 RB5573 RB5573 2901640 2902539 + permease best DB hits: BLAST: pir:E82830%3B conserved hypothetical protein XF0250 [imported] -%3B E%3D9e-18 gb:AAK02545.1%3B (AE006082) unknown [Pasteurella multocida]%3B E%3D2e-07 pir:B83243%3B hypothetical protein PA3222 [imported] - Pseudomonas%3B E%3D7e-04 COG: XF0250%3B COG0697 Predicted permeases%3B E%3D8e-19 PFAM: PF00892%3B Integral membrane protein DUF6%3B E%3D0.00013 gene gene3141 http://www.ncbi.nlm.nih.gov/gene/?term=RB5573 RB5575 RB5575 RB5575 2902618 2903553 + hydrolase best DB hits: BLAST: swissprot:Q50658%3B YN07_MYCTU HYPOTHETICAL 29.7 KDA PROTEIN RV2307C%3B E%3D0.002 COG: Rv2307c%3B COG1073 Hydrolases of the alpha/beta superfamily%3B E%3D2e-04 gene gene3142 http://www.ncbi.nlm.nih.gov/gene/?term=RB5575 RB5577 RB5577 gnl gnl 2903665 2904753 - gluconolactonase PMID: 1482681 best DB hits: BLAST: embl:CAB59581.1%3B (AL132662) possible gluconolactonase precursor%3B E%3D2e-30 swissprot:Q01578%3B GNL_ZYMMO GLUCONOLACTONASE PRECURSOR%3B E%3D2e-19 pir:B82698%3B gluconolactonase precursor XF1297 [imported] - Xylella%3B E%3D3e-19 COG: XF1297%3B COG3386 Uncharacterized protein%3B E%3D3e-20 gene gene3143 http://www.ncbi.nlm.nih.gov/gene/?term=RB5577 RB558 RB558 RB558 308327 308491 - hypothetical protein gene gene321 http://www.ncbi.nlm.nih.gov/gene/?term=RB558 RB5581 RB5581 RB5581 2904780 2905973 - hypothetical protein best DB hits: BLAST: pir:A82381%3B conserved hypothetical protein VCA1077 [imported] -%3B E%3D8e-05 gb:AAD38234.1%3B (U17224) CarF [Pectobacterium carotovorum]%3B E%3D0.002 pir:H81703%3B conserved hypothetical protein TC0422 [imported] -%3B E%3D0.016 COG: VCA1077_2%3B COG1262 Uncharacterized BCR%3B E%3D8e-06 gene gene3144 http://www.ncbi.nlm.nih.gov/gene/?term=RB5581 RB5584 RB5584 RB5584 2906089 2906592 + signal peptide gene gene3145 http://www.ncbi.nlm.nih.gov/gene/?term=RB5584 RB5585 RB5585 RB5585 2906633 2907235 - RNA polymerase sigma-E factor PMID: 12024217 best DB hits: BLAST: embl:CAB83107.1%3B (AJ276657) sigma factor 3 [Sinapis alba]%3B E%3D0.13 pir:B72234%3B RNA polymerase sigma-E factor - Thermotoga maritima%3B E%3D0.17 pir:S30404%3B hypothetical protein 3 - Streptomyces clavuligerus%3B E%3D0.21 PFAM: PF01046%3B NodD transcription activator c%3B E%3D0.2 PF00140%3B Sigma-70 factor%3B E%3D0.00055 PF00196%3B Bacterial regulatory proteins%2C%3B E%3D0.043 gene gene3146 http://www.ncbi.nlm.nih.gov/gene/?term=RB5585 RB5587 RB5587 RB5587 2907345 2908004 - signal peptide gene gene3147 http://www.ncbi.nlm.nih.gov/gene/?term=RB5587 RB5590 RB5590 RB5590 2908531 2909037 - signal peptide gene gene3148 http://www.ncbi.nlm.nih.gov/gene/?term=RB5590 RB5593 RB5593 RB5593 2909182 2913054 - serine/threonine-protein kinase PMID: 7768349 best DB hits: BLAST: gb:AAF73695.1%3B (AE002226) serinethreonine-protein kinase%3B E%3D7e-39 pir:G71532%3B probable threoninetyrosine-specific protein kinase (EC%3B E%3D3e-38 pir:C72120%3B st protein kinase - Chlamydophila pneumoniae (strain%3B E%3D4e-37 COG: CT301_1%3B COG0515 Serine/threonine protein kinases%3B E%3D3e-39 PFAM: PF00069%3B Protein kinase domain%3B E%3D2.2e-27 PF00515%3B TPR Domain%3B E%3D0.89 PF02018%3B Cellulose binding domain%3B E%3D0.037 gene gene3149 http://www.ncbi.nlm.nih.gov/gene/?term=RB5593 RB5595 RB5595 RB5595 2913027 2913269 + hypothetical protein gene gene3150 http://www.ncbi.nlm.nih.gov/gene/?term=RB5595 RB5597 RB5597 RB5597 2913295 2913807 + signal peptide gene gene3151 http://www.ncbi.nlm.nih.gov/gene/?term=RB5597 RB56 RB56 RB56 24564 24833 - hypothetical protein gene gene32 http://www.ncbi.nlm.nih.gov/gene/?term=RB56 RB560 RB560 RB560 308542 309384 - hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:E83477%3B conserved hypothetical protein PA1349 [imported] -%3B E%3D3e-18 swissprot:Q52996%3B YDNX_RHIME HYPOTHETICAL 13.6 KDA PROTEIN IN DNAA%3B E%3D1e-07 pir:C83475%3B hypothetical protein PA1354 [imported] - Pseudomonas%3B E%3D4e-06 gene gene322 http://www.ncbi.nlm.nih.gov/gene/?term=RB560 RB5601 RB5601 hisI hisI 2913833 2914309 + phosphoribosyl-ATP pyrophosphatase PMID: 3062174 best DB hits: BLAST: swissprot:O30723%3B HIS2_RHOCA PHOSPHORIBOSYL-ATP PYROPHOSPHATASE%3B E%3D2e-10 swissprot:P26722%3B HIS2_AZOBR PHOSPHORIBOSYL-ATP PYROPHOSPHATASE%3B E%3D6e-08 pir:D81178%3B phosphoribosyl-ATP cyclohydrolase NMB0603 [imported] -%3B E%3D8e-08 COG: NMB0603%3B COG0140 Phosphoribosyl-ATP pyrophosphohydrolase%3B E%3D8e-09 PFAM: PF01503%3B Phosphoribosyl-ATP pyrophosphohydrol%3B E%3D9.2e-30 gene gene3152 http://www.ncbi.nlm.nih.gov/gene/?term=RB5601 RB5603 RB5603 hisG hisG 2914405 2915304 + ATP phosphoribosyltransferase PMID: 3062174 best DB hits: BLAST: swissprot:Q99145%3B HIS1_YARLI ATP PHOSPHORIBOSYLTRANSFERASE -----%3B E%3D2e-43 swissprot:P46586%3B HIS1_CANAL ATP PHOSPHORIBOSYLTRANSFERASE -----%3B E%3D6e-42 swissprot:O33256%3B HIS1_MYCTU ATP PHOSPHORIBOSYLTRANSFERASE -----%3B E%3D4e-41 COG: Rv2121c%3B COG0040 ATP phosphoribosyltransferase (histidine%3B E%3D4e-42 hisG%3B COG0040 ATP phosphoribosyltransferase (histidine biosynthesis)%3B E%3D2e-36 VC1132%3B COG0040 ATP phosphoribosyltransferase (histidine%3B E%3D3e-34 PFAM: PF01634%3B ATP phosphoribosyltransferase%3B E%3D2e-56 gene gene3153 http://www.ncbi.nlm.nih.gov/gene/?term=RB5603 RB5604 RB5604 RB5604 2915323 2915454 + hypothetical protein gene gene3154 http://www.ncbi.nlm.nih.gov/gene/?term=RB5604 RB5605 RB5605 RB5605 2915422 2915625 - hypothetical protein gene gene3155 http://www.ncbi.nlm.nih.gov/gene/?term=RB5605 RB5606 RB5606 uvrA uvrA 2915852 2918947 - excinuclease ABC subunit A PMID: 3007478 best DB hits: BLAST: swissprot:O26543%3B UVRA_METTH EXCINUCLEASE ABC SUBUNIT A -----%3B E%3D1e-178 ddbj:BAB07313.1%3B (AP001519) excinuclease ABC (subunit A) [Bacillus%3B E%3D1e-173 swissprot:Q9Z507%3B UVRA_STRCO EXCINUCLEASE ABC SUBUNIT A -----%3B E%3D1e-168 COG: MTH443%3B COG0178 Excinuclease ATPase subunit%3B E%3D1e-179 PFAM: PF00005%3B ABC transporter%3B E%3D0.0014 PF01583%3B Adenylylsulfate kinase%3B E%3D0.037 PF00485%3B Phosphoribulokinase / Uridine%3B E%3D0.54 gene gene3156 http://www.ncbi.nlm.nih.gov/gene/?term=RB5606 RB5608 RB5608 RB5608 2918941 2920320 + large multi-functional protein best DB hits: BLAST: embl:CAB45032.1%3B (AL078635) large multi-functional%3B E%3D4e-32 embl:CAB58265.1%3B (AL121849) multi-domain protein%3B E%3D6e-30 pir:T36423%3B probable large%2C multifunctional secreted protein -%3B E%3D9e-05 gene gene3157 http://www.ncbi.nlm.nih.gov/gene/?term=RB5608 RB5611 RB5611 RB5611 2920380 2920733 + hypothetical protein gene gene3158 http://www.ncbi.nlm.nih.gov/gene/?term=RB5611 RB5612 RB5612 RB5612 2920721 2921521 + signal peptide gene gene3159 http://www.ncbi.nlm.nih.gov/gene/?term=RB5612 RB5613 RB5613 RB5613 2921546 2922628 + hypothetical protein best DB hits: BLAST: pir:B75319%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D5e-47 gb:AAG55401.1%3B AE005281_4 (AE005281) orf%2C hypothetical protein%3B E%3D8e-17 swissprot:P75843%3B YCAQ_ECOLI HYPOTHETICAL 47.7 KDA PROTEIN IN%3B E%3D3e-16 COG: DR2072%3B COG3214 Uncharacterized BCR%3B E%3D5e-48 gene gene3160 http://www.ncbi.nlm.nih.gov/gene/?term=RB5613 RB5614 RB5614 RB5614 2922659 2923114 + hypothetical protein gene gene3161 http://www.ncbi.nlm.nih.gov/gene/?term=RB5614 RB5615 RB5615 RB5615 2923193 2924320 - hypothetical protein best DB hits: BLAST: pir:B75154%3B hypothetical protein PAB2408 - Pyrococcus abyssi (strain%3B E%3D0.21 PFAM: PF00515%3B TPR Domain%3B E%3D0.15 gene gene3162 http://www.ncbi.nlm.nih.gov/gene/?term=RB5615 RB5616 RB5616 RB5616 2924378 2926477 - hypothetical protein best DB hits: BLAST: pir:B69988%3B hypothetical protein ytaP - Bacillus subtilis -----%3B E%3D3e-15 ddbj:BAA81869.1%3B (AB026295) ESTs C19441(E10423)%2CC99201(E10423)%3B E%3D2e-08 pir:G82643%3B conserved hypothetical protein XF1745 [imported] -%3B E%3D0.12 PFAM: PF00969%3B Class II histocompatibility ant%3B E%3D0.17 gene gene3163 http://www.ncbi.nlm.nih.gov/gene/?term=RB5616 RB5618 RB5618 RB5618 2926646 2927152 - hypothetical protein best DB hits: BLAST: pir:D83595%3B hypothetical protein PA0398 [imported] - Pseudomonas%3B E%3D2e-40 gb:AAG45137.1%3B AF310895_3 (AF310895) unknown [Dictyostelium%3B E%3D5e-06 gb:AAF48683.1%3B (AE003504) CG9089 gene product [Drosophila%3B E%3D2e-05 COG: PA0398%3B COG2314 Predicted membrane protein%3B E%3D2e-41 gene gene3164 http://www.ncbi.nlm.nih.gov/gene/?term=RB5618 RB5619 RB5619 RB5619 2927404 2928822 - GTP-binding protein best DB hits: BLAST: swissprot:P74120%3B ENGA_SYNY3 PROBABLE GTP-BINDING PROTEIN ENGA%3B E%3D7e-72 ddbj:BAA88823.1%3B (AB016077) phosphoglycerate dehydrogenase%3B E%3D1e-69 swissprot:P50743%3B ENGA_BACSU PROBABLE GTP-BINDING PROTEIN ENGA%3B E%3D6e-68 COG: slr1974%3B COG1160 Predicted GTPases%3B E%3D7e-73 PFAM: PF02263%3B Guanylate-binding protein%2C N-termina%3B E%3D0.84 PF01926%3B GTPase of unknown function%3B E%3D8.1e-11 PF02421%3B Ferrous iron transport protein B%3B E%3D1.4e-05 gene gene3165 http://www.ncbi.nlm.nih.gov/gene/?term=RB5619 RB562 RB562 RB562 309395 309868 - hypothetical protein PMID: 11474104 gene gene323 http://www.ncbi.nlm.nih.gov/gene/?term=RB562 RB5620 RB5620 RB5620 2928859 2929824 + DNA polymerase PMID: 1324872 best DB hits: BLAST: pir:E70446%3B N-terminus of phage SPO1 DNA polymerase - Aquifex%3B E%3D2e-28 pir:C71351%3B probable DNA polymerase%2C bacteriophage-type - syphilis%3B E%3D6e-26 pir:D75359%3B DNA polymerase-related protein - Deinococcus radiodurans%3B E%3D4e-24 COG: aq_1693%3B COG1573 Uracil-DNA glycosylase%3B E%3D2e-29 gene gene3166 http://www.ncbi.nlm.nih.gov/gene/?term=RB5620 RB5622 RB5622 RB5622 2930011 2930538 - hypothetical protein gene gene3167 http://www.ncbi.nlm.nih.gov/gene/?term=RB5622 RB5625 RB5625 RB5625 2930972 2931154 - hypothetical protein gene gene3168 http://www.ncbi.nlm.nih.gov/gene/?term=RB5625 RB5627 RB5627 pepN pepN 2931090 2933726 + aminopeptidase PMID: 1765107 best DB hits: BLAST: embl:CAC16707.1%3B (AL450289) metallopeptidase%3B E%3D2e-08 gb:AAB68919.1%3B (U00062) Aap1'p: argininealanine aminopeptidase%3B E%3D8e-05 swissprot:P32454%3B APE2_YEAST AMINOPEPTIDASE II (YSCII) -----%3B E%3D1e-04 COG: YHR047c%3B COG0308 Aminopeptidase N%3B E%3D8e-06 gene gene3169 http://www.ncbi.nlm.nih.gov/gene/?term=RB5627 RB5629 RB5629 RB5629 2933723 2934316 + hypothetical protein gene gene3170 http://www.ncbi.nlm.nih.gov/gene/?term=RB5629 RB563 RB563 RB563 309988 310866 - hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:C83475%3B hypothetical protein PA1354 [imported] - Pseudomonas%3B E%3D7e-41 pir:T35585%3B hypothetical protein SC6G4.34 - Streptomyces%3B E%3D3e-14 pir:E83575%3B hypothetical protein PA0557 [imported] - Pseudomonas%3B E%3D7e-09 gene gene324 http://www.ncbi.nlm.nih.gov/gene/?term=RB563 RB5630 RB5630 parA parA 2934370 2935218 - partitioning or sporulation protein ParA PMID: 9054507 best DB hits: BLAST: gb:AAF16005.1%3B AF187159_5 (AF187159) ParA [Streptomyces coelicolor%3B E%3D8e-52 pir:F70851%3B probable parB protein - Mycobacterium tuberculosis%3B E%3D9e-52 gb:AAC03484.1%3B (AF031590) Soj-like [Streptomyces coelicolor%3B E%3D2e-51 COG: Rv3918c%3B COG1192 ATPases involved in chromosome partitioning%3B E%3D9e-53 PFAM: PF00142%3B 4Fe-4S iron sulfur cluster bi%3B E%3D0.00074 PF02374%3B Anion-transporting ATPase%3B E%3D0.0047 PF01227%3B GTP cyclohydrolase I%3B E%3D0.52 gene gene3171 http://www.ncbi.nlm.nih.gov/gene/?term=RB5630 RB5631 RB5631 RB5631 2935243 2935548 + hypothetical protein gene gene3172 http://www.ncbi.nlm.nih.gov/gene/?term=RB5631 RB5634 RB5634 RB5634 2935709 2935858 + hypothetical protein gene gene3173 http://www.ncbi.nlm.nih.gov/gene/?term=RB5634 RB5635 RB5635 RB5635 2935874 2936059 - hypothetical protein best DB hits: PFAM: PF01587%3B Monocarboxylate transporter%3B E%3D0.39 gene gene3174 http://www.ncbi.nlm.nih.gov/gene/?term=RB5635 RB5637 RB5637 RB5637 2936058 2936810 + sugar phosphate isomerase/epimerase best DB hits: BLAST: pir:A83457%3B conserved hypothetical protein PA1501 [imported] -%3B E%3D1e-11 gb:AAG59852.1%3B AF284750_1 (AF284750) HT036-ISO [Homo sapiens]%3B E%3D9e-10 swissprot:P36951%3B TRLC_DROME TRANSIENT RECEPTOR POTENTIAL LOCUS C%3B E%3D2e-09 COG: PA1501%3B COG1082 Predicted endonucleases%3B E%3D1e-12 gene gene3175 http://www.ncbi.nlm.nih.gov/gene/?term=RB5637 RB5638 RB5638 RB5638 2936814 2939162 + hypothetical protein PMID: 11337471 best DB hits: BLAST: gb:AAK05748.1%3B AE006395_8 (AE006395) UNKNOWN PROTEIN [Lactococcus%3B E%3D0.018 pir:G81786%3B Neisseria-specific antigen protein%2C TspA NMA2146%3B E%3D0.38 gb:AAF57761.1%3B (AE003801) CG5765 gene product [Drosophila%3B E%3D0.51 PFAM: PF00249%3B Myb-like DNA-binding domain%3B E%3D0.16 gene gene3176 http://www.ncbi.nlm.nih.gov/gene/?term=RB5638 RB5641 RB5641 RB5641 2939202 2940830 + integral membrane protein- Na+H+ antiporter best DB hits: BLAST: pir:H81355%3B probable integral membrane protein Cj0832c [imported] -%3B E%3D2e-58 pir:D75220%3B hypothetical protein PAB2161 - Pyrococcus abyssi (strain%3B E%3D3e-54 pir:D71202%3B hypothetical protein PH1889 - Pyrococcus horikoshii%3B E%3D4e-52 COG: Cj0832c%3B COG1757 Na+/H+ antiporter%3B E%3D2e-59 gene gene3177 http://www.ncbi.nlm.nih.gov/gene/?term=RB5641 RB5642 RB5642 fliG fliG 2940969 2942018 + flagellar motor switch protein fliG PMID: 10440379 best DB hits: BLAST: swissprot:Q9WY63%3B FLIG_THEMA FLAGELLAR MOTOR SWITCH PROTEIN FLIG%3B E%3D3e-60 pir:G71328%3B probable flagellar motor switch protein (fliG-2) -%3B E%3D2e-57 swissprot:P23448%3B FLIG_BACSU FLAGELLAR MOTOR SWITCH PROTEIN FLIG%3B E%3D5e-57 COG: TM0220%3B COG1536 Flagellar motor switch protein%3B E%3D3e-61 PFAM: PF01706%3B FliG C-terminal domain%3B E%3D7.8e-45 gene gene3178 http://www.ncbi.nlm.nih.gov/gene/?term=RB5642 RB5643 RB5643 RB5643 2942015 2942314 - hypothetical protein gene gene3179 http://www.ncbi.nlm.nih.gov/gene/?term=RB5643 RB5644 RB5644 RB5644 2942366 2943130 - secreted glycosyl hydrolase PMID: 8843436 best DB hits: BLAST: pir:T34929%3B hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces%3B E%3D6e-04 embl:CAB94634.1%3B (AL359215) secreted glycosyl hydrolase.%3B E%3D7e-04 embl:CAB45032.1%3B (AL078635) large multi-functional%3B E%3D0.055 gene gene3180 http://www.ncbi.nlm.nih.gov/gene/?term=RB5644 RB5645 RB5645 RB5645 2943152 2944822 - serine protease PMID: 2180903 best DB hits: BLAST: embl:CAA73938.1%3B (Y13616) degP [Bradyrhizobium japonicum]%3B E%3D2e-23 gb:AAF87931.1%3B AF163841_10 (AF163841) serine protease%3B E%3D4e-22 swissprot:P54925%3B DEGP_BARHE PROBABLE PERIPLASMIC SERINE PROTEASE%3B E%3D7e-21 COG: slr1204%3B COG0265 Trypsin-like serine proteases%2C typically%3B E%3D1e-19 htrA%3B COG0265 Trypsin-like serine proteases%2C typically periplasmic%2C%3B E%3D1e-18 BB0104%3B COG0265 Trypsin-like serine proteases%2C typically%3B E%3D2e-18 PFAM: PF00089%3B Trypsin%3B E%3D4.9e-10 PF00595%3B PDZ domain (Also known as DHR or GLG%3B E%3D0.0022 gene gene3181 http://www.ncbi.nlm.nih.gov/gene/?term=RB5645 RB5647 RB5647 RB5647 2944831 2946567 - methyltransferase PMID: 8905231 best DB hits: BLAST: swissprot:P42349%3B YC42_SYNY3 HYPOTHETICAL METHYLTRANSFERASE%3B E%3D1e-58 swissprot:Q55914%3B Y309_SYNY3 HYPOTHETICAL METHYLTRANSFERASE%3B E%3D4e-27 pir:E72242%3B Mg-protoporphyrin IX monomethyl ester oxidative%3B E%3D3e-11 COG: sll1242%3B COG1032 Fe-S oxidoreductases family 2%3B E%3D9e-60 PFAM: PF00750%3B tRNA synthetases class I (R)%3B E%3D0.67 gene gene3182 http://www.ncbi.nlm.nih.gov/gene/?term=RB5647 RB5648 RB5648 RB5648 2946605 2947117 + hypothetical protein gene gene3183 http://www.ncbi.nlm.nih.gov/gene/?term=RB5648 RB5649 RB5649 RB5649 2946695 2947318 - hypothetical protein gene gene3184 http://www.ncbi.nlm.nih.gov/gene/?term=RB5649 RB5652 RB5652 RB5652 2947071 2947226 - hypothetical protein gene gene3185 http://www.ncbi.nlm.nih.gov/gene/?term=RB5652 RB5653 RB5653 gltD gltD 2947365 2948867 - NADH-glutamate synthase small chain PMID: 2643092 PMID: 3326786 best DB hits: BLAST: ddbj:BAA12742.1%3B (D85230) small subunit of NADH-dependent%3B E%3D1e-163 pir:T49818%3B probable glutamate synthase (NADPH) [imported] -%3B E%3D1e-162 pir:S74625%3B NADH-glutamate synthase small chain gltD - Synechocystis%3B E%3D1e-161 COG: sll1027%3B COG0493 NADPH-dependent glutamate synthase beta chain and%3B E%3D1e-162 PFAM: PF01494%3B FAD binding domain%3B E%3D0.013 PF02254%3B KTN NAD-binding domain%3B E%3D0.036 PF00984%3B UDP-glucose/GDP-mannose dehydr%3B E%3D0.28 gene gene3186 http://www.ncbi.nlm.nih.gov/gene/?term=RB5653 RB5654 RB5654 gltB gltB 2949010 2953575 - glutamate synthase [NADPH] large chain PMID: 2643092 PMID: 3326786 best DB hits: BLAST: swissprot:Q06434%3B GLSF_ANTSP FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE%3B E%3D0.0 swissprot:P23225%3B GLSF_MAIZE FERREDOXIN-DEPENDENT GLUTAMATE%3B E%3D0.0 swissprot:Q03460%3B GLSN_MEDSA GLUTAMATE SYNTHASE [NADH]%2C CHLOROPLAST%3B E%3D0.0 COG: sll1502_2%3B COG0069 Glutamate synthetase domain 2%3B E%3D0.0 sll1502_1%3B COG0067 Glutamate synthetase domain 1%3B E%3D1e-118 PFAM: PF01645%3B Conserved region in glutamate%3B E%3D5.5e-235 PF01493%3B Domain of unknown function DU%3B E%3D4.2e-95 gene gene3187 http://www.ncbi.nlm.nih.gov/gene/?term=RB5654 RB5655 RB5655 RB5655 2953644 2954621 - transcriptional regulator PMID: 3413113 best DB hits: BLAST: swissprot:Q9X725%3B OXYR_ERWCH HYDROGEN PEROXIDE-INDUCIBLE GENES%3B E%3D1e-25 swissprot:P71318%3B OXYR_ERWCA HYDROGEN PEROXIDE-INDUCIBLE GENES%3B E%3D1e-25 swissprot:P44418%3B OXYR_HAEIN HYDROGEN PEROXIDE-INDUCIBLE GENES%3B E%3D3e-25 COG: HI0571%3B COG0583 Transcriptional regulator%3B E%3D2e-26 PFAM: PF00126%3B Bacterial regulatory helix-turn-heli%3B E%3D9.6e-37 gene gene3188 http://www.ncbi.nlm.nih.gov/gene/?term=RB5655 RB5657 RB5657 RB5657 2954894 2955289 - hypothetical protein best DB hits: BLAST: gb:AAB81983.1%3B (AF025662) unknown [Vibrio cholerae]%3B E%3D7e-18 ddbj:BAB02723.1%3B (AB022216) gene_id:MGD8.2~~unknown protein%3B E%3D1e-11 pir:T09703%3B pop3 protein - western balsam poplar x cottonwood%3B E%3D5e-08 gene gene3189 http://www.ncbi.nlm.nih.gov/gene/?term=RB5657 RB566 RB566 RB566 311123 312007 - transmembrane protein PMID: 9260957 PMID: 11481431 best DB hits: BLAST: gb:AAC45595.1%3B (AF006743) unknown [Caulobacter crescentus]%3B E%3D0.65 gene gene325 http://www.ncbi.nlm.nih.gov/gene/?term=RB566 RB5660 RB5660 RB5660 2955464 2956750 + signal peptide best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene3190 http://www.ncbi.nlm.nih.gov/gene/?term=RB5660 RB5663 RB5663 RB5663 2956834 2957940 - signal peptide gene gene3191 http://www.ncbi.nlm.nih.gov/gene/?term=RB5663 RB5665 RB5665 RB5665 2958146 2959264 - calpain best DB hits: BLAST: gb:AAD04331.1%3B (AF062404) calpain [Drosophila melanogaster]%3B E%3D0.001 gb:AAF50189.1%3B (AE003550) CalpB gene product [Drosophila%3B E%3D0.001 gene gene3192 http://www.ncbi.nlm.nih.gov/gene/?term=RB5665 RB5670 RB5670 moeB moeB 2959418 2959762 - molybdopterin-synthase sulfurylase PMID: 10622725 best DB hits: BLAST: pir:S76565%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D7e-14 pir:S76179%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D2e-12 ddbj:BAB06639.1%3B (AP001517) BH2920~~unknown conserved protein%3B E%3D2e-12 COG: slr0192%3B COG0607 Rhodanese-related sulfurtransferases%3B E%3D7e-15 yceA%3B COG1054 Uncharacterized enzyme related to sulfurtransferases%3B E%3D4e-04 PFAM: PF00581%3B Rhodanese-like domain%3B E%3D4.2e-17 gene gene3193 http://www.ncbi.nlm.nih.gov/gene/?term=RB5670 RB5671 RB5671 nadE nadE 2959877 2961988 - NAD synthetase catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP%3B ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one%3B forms homodimers gene gene3194 http://www.ncbi.nlm.nih.gov/gene/?term=RB5671 RB5674 RB5674 RB5674 2962174 2962887 - serine/threonine protein phosphatase PMID: 9130712 best DB hits: BLAST: pir:A72340%3B serinethreonine protein phosphatase - Thermotoga%3B E%3D3e-30 gb:AAB68789.1%3B (U97022) orf%3B similar to serinethreonine protein%3B E%3D4e-26 gb:AAC46052.1%3B (U80887) serinethreonine protein phosphatase 1%3B E%3D1e-20 COG: TM0742%3B COG0639 Diadenosine tetraphosphatase and related%3B E%3D2e-31 PFAM: PF00149%3B Ser/Thr protein phosphatase%3B E%3D0.15 gene gene3195 http://www.ncbi.nlm.nih.gov/gene/?term=RB5674 RB5675 RB5675 RB5675 2962888 2963667 - transcriptional regulator best DB hits: BLAST: embl:CAB72194.1%3B (AL138851) hypothetical protein SCE59.07c%3B E%3D3e-10 gb:AAG15555.1%3B (AY007523) AlgH [Pseudomonas fluorescens]%3B E%3D6e-06 pir:C83596%3B conserved hypothetical protein PA0405 [imported] -%3B E%3D6e-06 COG: PA0405%3B COG1678 transcriptional regulator%3B E%3D6e-07 PFAM: PF02622%3B Uncharacterized ACR%2C COG1678%3B E%3D4.1e-12 gene gene3196 http://www.ncbi.nlm.nih.gov/gene/?term=RB5675 RB5676 RB5676 RB5676 2963664 2963807 - hypothetical protein gene gene3197 http://www.ncbi.nlm.nih.gov/gene/?term=RB5676 RB5678 RB5678 fabH fabH 2963826 2964836 - 3-oxoacyl-ACP synthase PMID: 1551888 PMID: 10593943 best DB hits: BLAST: pir:C81029%3B 3-oxoacyl-(acyl-carrier-protein) synthase III NMB1916%3B E%3D7e-41 gb:AAK04869.1%3B AE006310_11 (AE006310)%3B E%3D1e-39 pir:H82633%3B beta-ketoacyl-[ACP] synthase III XF1817 [imported] -%3B E%3D3e-39 COG: NMB1916%3B COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III%3B E%3D7e-42 PFAM: PF02797%3B Chalcone and stilbene synthas%3B E%3D0.31 gene gene3198 http://www.ncbi.nlm.nih.gov/gene/?term=RB5678 RB568 RB568 RB568 312112 312345 - hypothetical protein gene gene326 http://www.ncbi.nlm.nih.gov/gene/?term=RB568 RB5681 RB5681 tig tig 2965080 2966843 + trigger factor PMID: 2211496 best DB hits: BLAST: gb:AAG30851.1%3B AF296129_1 (AF296129) trigger factor [Aquifex%3B E%3D4e-23 swissprot:O67358%3B TIG_AQUAE TRIGGER FACTOR (TF) ----- pir:%3B E%3D8e-23 swissprot:O53189%3B TIG_MYCTU TRIGGER FACTOR (TF) ----- pir:%3B E%3D1e-20 COG: aq_1340%3B COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase%3B E%3D7e-24 tig%3B COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger%3B E%3D5e-20 BS_tig%3B COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase%3B E%3D8e-20 gene gene3200 http://www.ncbi.nlm.nih.gov/gene/?term=RB5681 RB5685 RB5685 RB5685 2966933 2967730 - hypothetical protein PMID: 9389475 best DB hits: BLAST: gb:AAB89060.1%3B (AE000954) conserved hypothetical protein%3B E%3D7e-11 gb:AAD23399.1%3B AF110772_1 (AF110772) unknown [Streptomyces%3B E%3D1e-10 pir:G69054%3B conserved hypothetical protein MTH141 - Methanobacterium%3B E%3D1e-10 COG: AF2196%3B COG1891 Uncharacterized ArCR%3B E%3D7e-12 gene gene3201 http://www.ncbi.nlm.nih.gov/gene/?term=RB5685 RB5689 RB5689 rnd rnd 2967715 2969196 + ribonuclease D PMID: 3041371 best DB hits: BLAST: gb:AAG56793.1%3B AE005403_4 (AE005403) RNase D%2C processes tRNA%3B E%3D2e-32 pir:A83483%3B ribonuclease D PA1294 [imported] - Pseudomonas%3B E%3D3e-32 swissprot:P09155%3B RND_ECOLI RIBONUCLEASE D (RNASE D) -----%3B E%3D7e-32 COG: PA1294%3B COG0349 Ribonuclease D%3B E%3D3e-33 aq_1967%3B COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase%3B E%3D3e-08 PFAM: PF01612%3B 3'-5' exonuclease%3B E%3D2e-31 PF00570%3B HRDC domain%3B E%3D0.00016 gene gene3202 http://www.ncbi.nlm.nih.gov/gene/?term=RB5689 RB569 RB569 RB569 312309 313103 + hypothetical protein PMID: 8843436 best DB hits: BLAST: pir:T34929%3B hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces%3B E%3D2e-08 embl:CAB94634.1%3B (AL359215) secreted glycosyl hydrolase.%3B E%3D3e-07 embl:CAB45032.1%3B (AL078635) large multi-functional%3B E%3D8e-05 gene gene327 http://www.ncbi.nlm.nih.gov/gene/?term=RB569 RB5691 RB5691 RB5691 2969237 2970463 - adenylate cyclase best DB hits: BLAST: gb:AAF82144.1%3B AC034256_8 (AC034256) Contains similarity to F-box%3B E%3D3e-07 pir:T15864%3B hypothetical protein C56E6.6 - Caenorhabditis elegans%3B E%3D0.006 embl:CAB95333.1%3B (AL359782) possible adenylate cyclase%3B E%3D0.025 gene gene3203 http://www.ncbi.nlm.nih.gov/gene/?term=RB5691 RB5693 RB5693 RB5693 2970400 2970624 - hypothetical protein gene gene3204 http://www.ncbi.nlm.nih.gov/gene/?term=RB5693 RB5694 RB5694 bioD bioD 2970632 2971417 - dethiobiotin synthetase PMID: 8250549 best DB hits: BLAST: swissprot:P36572%3B BIOD_SERMA DETHIOBIOTIN SYNTHETASE (DETHIOBIOTIN%3B E%3D8e-20 swissprot:P53558%3B BIOD_BACSU DETHIOBIOTIN SYNTHETASE (DETHIOBIOTIN%3B E%3D1e-19 gb:AAG55149.1%3B AE005258_13 (AE005258) dethiobiotin synthetase%3B E%3D1e-18 COG: BS_bioD%3B COG0132 Dethiobiotin synthetase%3B E%3D1e-20 PFAM: PF01656%3B Cobyrinic acid a%2Cc-diamide synthase%3B E%3D0.077 gene gene3205 http://www.ncbi.nlm.nih.gov/gene/?term=RB5694 RB5695 RB5695 RB5695 2971401 2972267 + beta-alanine synthetase PMID: 8449931 best DB hits: BLAST: pir:H82556%3B beta-alanine synthetase XF2443 [imported] - Xylella%3B E%3D4e-78 pir:B81369%3B probable hydrolase Cj0947c [imported] - Campylobacter%3B E%3D2e-73 pir:F71901%3B hypothetical protein jhp0694 - Helicobacter pylori%3B E%3D2e-69 COG: XF2443%3B COG0388 Predicted amidohydrolase%3B E%3D4e-79 PFAM: PF00795%3B Carbon-nitrogen hydrolase%3B E%3D8.8e-98 gene gene3206 http://www.ncbi.nlm.nih.gov/gene/?term=RB5695 RB5696 RB5696 suhB suhB 2972326 2973153 - inositol monophosphatase PMID: 8002619 PMID: 10747806 best DB hits: BLAST: pir:F81092%3B extragenic suppressor protein SuhB NMB1347 [imported] -%3B E%3D3e-45 pir:B81848%3B inositol monophosphate family protein NMA1559 [imported]%3B E%3D1e-44 pir:C83169%3B extragenic suppressor protein SuhB PA3818 [imported] -%3B E%3D3e-42 COG: NMB1347%3B COG0483 Archaeal fructose-1%2C6-bisphosphatase and related%3B E%3D3e-46 PFAM: PF00459%3B Inositol monophosphatase%3B E%3D1.4e-70 gene gene3207 http://www.ncbi.nlm.nih.gov/gene/?term=RB5696 RB5697 RB5697 RB5697 2973214 2974596 + thiol-disulfide interchange protein PMID: 8384715 best DB hits: BLAST: swissprot:P14312%3B FIXW_RHILE FIXW PROTEIN ----- pir: JQ0313%3B E%3D3e-11 pir:C70314%3B thiol-disulfide interchange protein tlpA [imported] -%3B E%3D5e-06 ddbj:BAB05296.1%3B (AP001512) cytochrome c biogenesis (thioredoxin)%3B E%3D6e-05 COG: aq_152%3B COG0526 Thiol-disulfide isomerase and thioredoxins%3B E%3D5e-07 PFAM: PF00085%3B Thioredoxin%3B E%3D1.9e-05 gene gene3208 http://www.ncbi.nlm.nih.gov/gene/?term=RB5697 RB5699 RB5699 RB5699 2974605 2975243 + hypothetical protein PMID: 11248100 best DB hits: BLAST: gb:AAK03963.1%3B (AE006225) unknown [Pasteurella multocida]%3B E%3D2e-13 pir:A82416%3B conserved hypothetical protein VCA0789 [imported] -%3B E%3D1e-12 swissprot:P39270%3B YJDF_ECOLI HYPOTHETICAL 23.4 KD PROTEIN IN%3B E%3D1e-07 PFAM: PF02177%3B Amyloid A4 extracellular domain%3B E%3D0.63 gene gene3209 http://www.ncbi.nlm.nih.gov/gene/?term=RB5699 RB5701 RB5701 RB5701 2975188 2978523 + oxidase PMID: 3286606 best DB hits: BLAST: gb:AAG20509.1%3B (AE005123) glycolate oxidase subunit%3B GlcD%3B E%3D2e-48 gb:AAG20148.1%3B (AE005092) glycerol-3-phosphate dehydrogenase chain%3B E%3D5e-40 gb:AAG56674.1%3B AE005391_11 (AE005391) oxidase%3B E%3D2e-38 COG: VNG2422G_1%3B COG0277 FAD/FMN-containing dehydrogenases%3B E%3D2e-49 VNG2422G_2%3B COG0247 Fe-S oxidoreductases%3B E%3D7e-42 ydiJ_1%3B COG0277 FAD/FMN-containing dehydrogenases%3B E%3D5e-39 PFAM: PF01565%3B FAD binding domain%3B E%3D6.7e-40 PF02913%3B FAD linked oxidases%2C C-terminal%3B E%3D2.6e-14 gene gene3210 http://www.ncbi.nlm.nih.gov/gene/?term=RB5701 RB5703 RB5703 moaD moaD 2978520 2978780 + molybdopterin converting factor%2C small subunit PMID: 8514782 PMID: 10053003 best DB hits: BLAST: pir:G70920%3B probable MoaD involved in molybdopterin synthesis -%3B E%3D2e-05 ddbj:BAB06737.1%3B (AP001517) molybdopterin converting factor%3B E%3D3e-05 gb:AAD14600.1%3B (AF091872) molybdopterin-synthase small subunit%3B E%3D1e-04 COG: Rv3112%3B COG1977 Molybdopterin converting factor%2C small subunit%3B E%3D3e-06 gene gene3211 http://www.ncbi.nlm.nih.gov/gene/?term=RB5703 RB5705 RB5705 moaE moaE 2978777 2979289 + molybdopterin converting factor%2C large subunit PMID: 8361352 PMID: 8514782 best DB hits: BLAST: gb:AAF67478.1%3B AF155659_1 (AF155659) molybdenum cofactor%3B E%3D6e-15 embl:CAB71291.1%3B (AJ271728) molybdopterin synthase%2C large subunit%3B E%3D1e-14 pir:D70487%3B molybdopterin biosynthesis protein E chain [similarity]%3B E%3D1e-13 COG: aq_2181%3B COG0314 Molybdopterin converting factor%2C large subunit%3B E%3D1e-14 PFAM: PF02391%3B Molydopterin converting factor subun%3B E%3D7.2e-26 gene gene3212 http://www.ncbi.nlm.nih.gov/gene/?term=RB5705 RB5707 RB5707 RB5707 2979435 2979986 + hypothetical protein gene gene3213 http://www.ncbi.nlm.nih.gov/gene/?term=RB5707 RB5708 RB5708 RB5708 2980028 2980579 - hypothetical protein best DB hits: BLAST: ddbj:BAB07337.1%3B (AP001519) BH3618~~unknown conserved protein in%3B E%3D5e-11 pir:C72419%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D1e-08 pir:C71297%3B probable transmembrane protein - syphilis spirochete%3B E%3D5e-07 COG: BH3618%3B COG1699 Uncharacterized BCR%3B E%3D5e-12 PFAM: PF02623%3B Uncharacterized BCR%2C COG1699%3B E%3D5.7e-12 gene gene3214 http://www.ncbi.nlm.nih.gov/gene/?term=RB5708 RB5711 RB5711 flgL flgL 2980700 2982655 - flagellar hook-associated protein 3 PMID: 8158647 PMID: 2193164 best DB hits: BLAST: swissprot:P29744%3B FLGL_ECOLI FLAGELLAR HOOK-ASSOCIATED PROTEIN 3%3B E%3D4e-08 gb:AAG55829.1%3B AE005318_6 (AE005318) flagellar biosynthesis%3B E%3D1e-07 swissprot:P16326%3B FLGL_SALTY FLAGELLAR HOOK-ASSOCIATED PROTEIN 3%3B E%3D3e-07 COG: flgL%3B COG1344 Flagellin and related hook-associated proteins%3B E%3D4e-09 PFAM: PF00669%3B Bacterial flagellin N-terminus%3B E%3D0.028 gene gene3215 http://www.ncbi.nlm.nih.gov/gene/?term=RB5711 RB5713 RB5713 RB5713 2982595 2982759 - hypothetical protein gene gene3216 http://www.ncbi.nlm.nih.gov/gene/?term=RB5713 RB5715 RB5715 RB5715 2982826 2983458 + hypothetical protein PMID: 8843436 best DB hits: BLAST: embl:CAB69748.1%3B (AL137166) hypothetical protein SCC121.30c%3B E%3D0.009 gene gene3217 http://www.ncbi.nlm.nih.gov/gene/?term=RB5715 RB5716 RB5716 RB5716 2983465 2983761 - hypothetical protein best DB hits: BLAST: pir:T36788%3B hypothetical protein SCI30A.08 - Streptomyces%3B E%3D0.51 PFAM: PF02656%3B Domain of unknown function DUF%3B E%3D0.0074 gene gene3218 http://www.ncbi.nlm.nih.gov/gene/?term=RB5716 RB5717 RB5717 sthA sthA 2983764 2985257 - soluble pyridine nucleotide transhydrogenase catalyzes the conversion of NADPH to NADH gene gene3219 http://www.ncbi.nlm.nih.gov/gene/?term=RB5717 RB5720 RB5720 RB5720 2985336 2986280 + amidohydrolase PMID: 7987228 best DB hits: BLAST: pir:C75051%3B hydrolase related PAB1449 - Pyrococcus abyssi (strain%3B E%3D5e-28 pir:C71109%3B hypothetical protein PH0642 - Pyrococcus horikoshii%3B E%3D7e-27 pir:B83387%3B hypothetical protein PA2074 [imported] - Pseudomonas%3B E%3D2e-22 COG: PAB1449%3B COG0388 Predicted amidohydrolase%3B E%3D5e-29 PFAM: PF00795%3B Carbon-nitrogen hydrolase%3B E%3D8e-48 gene gene3220 http://www.ncbi.nlm.nih.gov/gene/?term=RB5720 RB5722 RB5722 RB5722 2986310 2987221 - hypothetical protein PMID: 9371463 best DB hits: BLAST: pir:H69043%3B conserved hypothetical protein MTH1330 -%3B E%3D0.19 swissprot:Q50500%3B YE63_METTH HYPOTHETICAL PROTEIN MTH1463 (ORF11)%3B E%3D0.30 pir:A55712%3B hypothetical protein X mtd 5'-region - Methanobacterium%3B E%3D0.39 gene gene3221 http://www.ncbi.nlm.nih.gov/gene/?term=RB5722 RB5724 RB5724 RB5724 2987319 2987567 - hypothetical protein gene gene3222 http://www.ncbi.nlm.nih.gov/gene/?term=RB5724 RB5725 RB5725 rph rph 2987529 2988269 + ribonuclease PH PMID: 1624460 best DB hits: BLAST: swissprot:P28619%3B RNPH_BACSU RIBONUCLEASE PH (RNASE PH) (TRNA%3B E%3D2e-60 pir:A44914%3B tRNA nucleotidyltransferase (EC 2.7.7.56) - Bacillus%3B E%3D4e-60 pir:D82350%3B ribonuclease PH VC0210 [imported] - Vibrio cholerae%3B E%3D7e-60 COG: BS_rph%3B COG0689 RNase PH%3B E%3D2e-61 PA4740%3B COG1185 Polyribonucleotide nucleotidyltransferase%3B E%3D0.001 PFAM: PF01138%3B 3' exoribonuclease%3B E%3D4.3e-59 gene gene3223 http://www.ncbi.nlm.nih.gov/gene/?term=RB5725 RB5727 RB5727 RB5727 2988285 2989502 + oxidoreductase best DB hits: BLAST: gb:AAD41367.1%3B AF151698_4 (AF151698) oxidoreductase%3B E%3D9e-09 pir:H69216%3B 3-chlorobenzoate-3%2C4-dioxygenase dyhydrogenase related%3B E%3D1e-08 pir:T38428%3B hypothetical oxidoreductase - fission yeast%3B E%3D5e-08 COG: MTH875%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D9e-10 PFAM: PF01408%3B Oxidoreductase%2C NAD-bindi%3B E%3D9.2e-22 gene gene3224 http://www.ncbi.nlm.nih.gov/gene/?term=RB5727 RB573 RB573 RB573 313188 313316 + hypothetical protein gene gene328 http://www.ncbi.nlm.nih.gov/gene/?term=RB573 RB5730 RB5730 RB5730 2989469 2990419 + ATP-utilizing enzyme PMID: 8905231 best DB hits: BLAST: swissprot:P73846%3B YH17_SYNY3 HYPOTHETICAL 30.2 KD PROTEIN SLR1717%3B E%3D1e-37 gb:AAB89691.1%3B (AE000995) conserved hypothetical protein%3B E%3D3e-28 pir:C72312%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D7e-28 COG: slr1717%3B COG1606 ATP-utilizing enzymes of the PP-loop superfamily%3B E%3D1e-38 PFAM: PF00764%3B Arginosuccinate synthase%3B E%3D0.042 gene gene3225 http://www.ncbi.nlm.nih.gov/gene/?term=RB5730 RB5731 RB5731 RB5731 2990416 2992047 + serine/threonine protein kinase PMID: 7768349 best DB hits: BLAST: pir:T36501%3B probable serinethreonine protein kinase - Streptomyces%3B E%3D3e-47 swissprot:P71584%3B PKNB_MYCTU SERINETHREONINE-PROTEIN%3B E%3D4e-46 swissprot:P54744%3B PKNB_MYCLE SERINETHREONINE-PROTEIN%3B E%3D2e-45 COG: Rv0014c_1%3B COG0515 Serine/threonine protein kinases%3B E%3D4e-47 PFAM: PF00069%3B Protein kinase domain%3B E%3D2.8e-44 gene gene3226 http://www.ncbi.nlm.nih.gov/gene/?term=RB5731 RB5732 RB5732 RB5732 2992114 2992512 - hypothetical protein gene gene3227 http://www.ncbi.nlm.nih.gov/gene/?term=RB5732 RB5733 RB5733 RB5733 2992454 2992648 - hypothetical protein gene gene3228 http://www.ncbi.nlm.nih.gov/gene/?term=RB5733 RB5734 RB5734 RB5734 2992771 2993634 + hypothetical protein PMID: 8905231 best DB hits: BLAST: pir:S75932%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D1e-35 pir:B83298%3B conserved hypothetical protein PA2771 [imported] -%3B E%3D7e-07 pir:S76731%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D9e-06 COG: sll0048_1%3B COG2203 GAF domain%3B E%3D2e-27 PFAM: PF01590%3B GAF domain%3B E%3D2.5e-09 gene gene3229 http://www.ncbi.nlm.nih.gov/gene/?term=RB5734 RB5736 RB5736 RB5736 2993690 2994466 - transcriptional regulator PMID: 1569007 best DB hits: BLAST: swissprot:P10940%3B UHPA_ECOLI transcriptional regulator%3B E%3D0.020 embl:CAB37412.1%3B (AJ224978) TtrR [Salmonella typhimurium] -----%3B E%3D0.075 swissprot:P27667%3B UHPA_SALTY transcriptional regulator%3B E%3D0.12 COG: uhpA%3B COG2197 Response regulators consisting of a CheY-like receiver%3B E%3D0.002 gene gene3230 http://www.ncbi.nlm.nih.gov/gene/?term=RB5736 RB5737 RB5737 RB5737 2994415 2994777 + hypothetical protein gene gene3231 http://www.ncbi.nlm.nih.gov/gene/?term=RB5737 RB5738 RB5738 ilvE ilvE 2994894 2995667 - branched-chain amino acid aminotransferase PMID: 3897211 best DB hits: BLAST: swissprot:Q58414%3B ILVE_METJA BRANCHED-CHAIN AMINO ACID%3B E%3D3e-07 gb:AAB90305.1%3B (AE001039) branched-chain amino acid%3B E%3D2e-05 pir:F69057%3B branched-chain amino-acid aminotransferase -%3B E%3D6e-05 COG: MJ1008%3B COG0115 Branched-chain amino acid%3B E%3D3e-08 gene gene3232 http://www.ncbi.nlm.nih.gov/gene/?term=RB5738 RB574 RB574 RB574 313360 317520 + hypothetical protein PMID: 10910347 best DB hits: BLAST: pir:D82679%3B hypothetical protein XF1451 [imported] - Xylella%3B E%3D6e-11 COG: XF1451%3B COG1305 transglutaminases%2C cysteine%3B E%3D5e-12 PFAM: PF01841%3B Transglutaminase-like superfam%3B E%3D0.0045 gene gene329 http://www.ncbi.nlm.nih.gov/gene/?term=RB574 RB5740 RB5740 RB5740 2995817 2996944 - hypothetical protein PMID: 11259647 best DB hits: PFAM: PF00487%3B Fatty acid desaturase%3B E%3D0.11 gene gene3233 http://www.ncbi.nlm.nih.gov/gene/?term=RB5740 RB5742 RB5742 RB5742 2997006 2997176 - hypothetical protein gene gene3234 http://www.ncbi.nlm.nih.gov/gene/?term=RB5742 RB5743 RB5743 RB5743 2997165 2998460 + flavoprotein PMID: 9387221 best DB hits: BLAST: gb:AAC00390.1%3B (AF008220) YtfP [Bacillus subtilis]%3B E%3D2e-57 ddbj:BAB06998.1%3B (AP001518) BH3279~~unknown conserved protein%3B E%3D5e-53 gb:AAK04356.1%3B AE006263_3 (AE006263) HYPOTHETICAL PROTEIN%3B E%3D3e-46 COG: BH3279%3B COG2081 Predicted flavoproteins%3B E%3D5e-54 PFAM: PF01134%3B Glucose inhibited division prot%3B E%3D0.38 PF01494%3B FAD binding domain%3B E%3D0.002 PF01946%3B Thi4 family%3B E%3D0.25 gene gene3235 http://www.ncbi.nlm.nih.gov/gene/?term=RB5743 RB5744 RB5744 cya cya 2998532 3000640 + adenylate cyclase PMID: 1970565 best DB hits: BLAST: swissprot:P40137%3B CYAA_STIAU ADENYLATE CYCLASE 1 (ATP%3B E%3D9e-11 swissprot:P19485%3B CYA1_RHIME ADENYLATE CYCLASE 1 (ATP%3B E%3D2e-10 pir:C71320%3B probable adenylate cyclase - syphilis spirochete -----%3B E%3D3e-10 COG: TP0485%3B COG2114 Adenylate cyclase%2C family 3 (some proteins contain%3B E%3D2e-11 PFAM: PF00498%3B FHA domain%3B E%3D0.61 PF00211%3B Adenylate and Guanylate cyclase%3B E%3D1.1e-07 gene gene3236 http://www.ncbi.nlm.nih.gov/gene/?term=RB5744 RB5745 RB5745 RB5745 3000842 3001234 - hypothetical protein gene gene3237 http://www.ncbi.nlm.nih.gov/gene/?term=RB5745 RB5747 RB5747 argS argS 3001359 3003374 - arginyl-tRNA synthetase PMID: 2668891 best DB hits: BLAST: pir:G82121%3B arginyl-tRNA synthetase VC2074 [imported] - Vibrio%3B E%3D1e-69 swissprot:Q55486%3B SYR_SYNY3 ARGINYL-TRNA SYNTHETASE%3B E%3D5e-68 embl:CAC01600.1%3B (AJ269505) arginyl-tRNA synthetase%3B E%3D4e-66 COG: VC2074%3B COG0018 Arginyl-tRNA synthetase%3B E%3D1e-70 PFAM: PF00750%3B tRNA synthetases class I (R)%3B E%3D5.7e-55 gene gene3238 http://www.ncbi.nlm.nih.gov/gene/?term=RB5747 RB5749 RB5749 RB5749 3003437 3004000 - hypothetical protein PMID: 10192928 best DB hits: BLAST: ddbj:BAB05047.1%3B (AP001511) BH1328~~unknown conserved protein%3B E%3D1e-12 pir:S77145%3B ybeB protein homolog iojap - Synechocystis sp. (strain%3B E%3D2e-12 pir:E75256%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D3e-11 COG: BH1328%3B COG0799 Uncharacterized ACR (homolog of plant Iojap%3B E%3D1e-13 CT769%3B COG0799 Uncharacterized ACR (homolog of plant Iojap proteins)%3B E%3D1e-09 TM0147%3B COG0799 Uncharacterized ACR (homolog of plant Iojap%3B E%3D2e-09 PFAM: PF02410%3B Domain of unknown function DUF143%3B E%3D3.3e-30 gene gene3239 http://www.ncbi.nlm.nih.gov/gene/?term=RB5749 RB5753 RB5753 RB5753 3004163 3004645 + bacterioferritin comigratory protein PMID: 9537378 best DB hits: BLAST: ddbj:BAB04667.1%3B (AP001510) bacterioferritin comigratory protein%3B E%3D2e-27 pir:F70870%3B probable bcp protein - Mycobacterium tuberculosis%3B E%3D2e-27 pir:A83520%3B bacterioferritin comigratory protein PA1008 [imported] -%3B E%3D8e-26 COG: BH0948%3B COG1225 Peroxiredoxins%3B E%3D2e-28 PFAM: PF00578%3B AhpC/TSA family%3B E%3D4.7e-35 gene gene3240 http://www.ncbi.nlm.nih.gov/gene/?term=RB5753 RB5754 RB5754 dnaK dnaK 3004578 3006515 + molecular chaperone DnaK best DB hits: BLAST: pir:F82206%3B DnaK-related protein VC1374 [imported] - Vibrio cholerae%3B E%3D1e-110 pir:E82206%3B DnaK-related protein VC1373 [imported] - Vibrio cholerae%3B E%3D2e-75 pir:C72385%3B dnaK-type molecular chaperone dnaK - Thermotoga maritima%3B E%3D4e-07 COG: VC1374%3B COG0443 Molecular chaperone%3B E%3D1e-111 PFAM: PF00370%3B FGGY family of carbohydrate kinases%2C%3B E%3D0.8 PF00012%3B Hsp70 protein%3B E%3D5.8e-06 gene gene3241 http://www.ncbi.nlm.nih.gov/gene/?term=RB5754 RB5755 RB5755 dnaK dnaK 3006427 3009393 + molecular chaperone DnaK PMID: 2345134 best DB hits: BLAST: pir:E82206%3B DnaK-related protein VC1373 [imported] - Vibrio cholerae%3B E%3D1e-142 pir:F82206%3B DnaK-related protein VC1374 [imported] - Vibrio cholerae%3B E%3D3e-88 swissprot:Q51382%3B HSCA_PSEAE CHAPERONE PROTEIN HSCA HOMOLOG%3B E%3D4e-08 COG: VC1373_1%3B COG0443 Molecular chaperone%3B E%3D1e-99 PFAM: PF00012%3B Hsp70 protein%3B E%3D0.0012 gene gene3242 http://www.ncbi.nlm.nih.gov/gene/?term=RB5755 RB5756 RB5756 RB5756 3009494 3013483 + hypothetical protein gene gene3243 http://www.ncbi.nlm.nih.gov/gene/?term=RB5756 RB5758 RB5758 RB5758 3013477 3014379 - hypothetical protein PMID: 9278503 best DB hits: BLAST: swissprot:Q46931%3B YGDQ_ECOLI HYPOTHETICAL 26.2 KD PROTEIN IN%3B E%3D2e-31 gb:AAF12561.1%3B AE001826_30 (AE001826) conserved hypothetical%3B E%3D5e-31 swissprot:P43932%3B YGDQ_HAEIN HYPOTHETICAL PROTEIN HI0056 -----%3B E%3D7e-30 COG: ygdQ%3B COG0861 Membrane protein TerC%2C possibly involved in tellurium%3B E%3D2e-32 DRB0131%3B COG0861 Membrane protein TerC%2C possibly involved in%3B E%3D5e-32 gene gene3244 http://www.ncbi.nlm.nih.gov/gene/?term=RB5758 RB576 RB576 RB576 317768 317929 - hypothetical protein gene gene330 http://www.ncbi.nlm.nih.gov/gene/?term=RB576 RB5761 RB5761 RB5761 3014426 3015202 - hypothetical protein best DB hits: PFAM: PF01925%3B Domain of unknown function DUF81%3B E%3D0.54 gene gene3245 http://www.ncbi.nlm.nih.gov/gene/?term=RB5761 RB5762 RB5762 RB5762 3015199 3015612 - pyrophosphatase PMID: 8760912 best DB hits: BLAST: swissprot:P42979%3B YPJD_BACSU HYPOTHETICAL 13.0 KD PROTEIN IN%3B E%3D8e-10 pir:H75445%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D5e-09 ddbj:BAB05398.1%3B (AP001512) BH1679~~unknown conserved protein%3B E%3D1e-08 COG: BS_ypjD%3B COG1694 Predicted pyrophosphatase%3B E%3D9e-11 PFAM: PF01503%3B Phosphoribosyl-ATP pyrophosphohydrol%3B E%3D0.23 gene gene3246 http://www.ncbi.nlm.nih.gov/gene/?term=RB5762 RB5763 RB5763 RB5763 3015609 3016823 - signal peptide PMID: 11481431 best DB hits: BLAST: embl:CAC18704.1%3B (AL451182) hypothetical protein [Streptomyces%3B E%3D0.12 gene gene3247 http://www.ncbi.nlm.nih.gov/gene/?term=RB5763 RB5766 RB5766 ndh ndh 3016868 3018265 - NADH dehydrogenase PMID: 6265208 best DB hits: BLAST: pir:S74826%3B NADH dehydrogenase (EC 1.6.99.3) - Synechocystis sp.%3B E%3D1e-110 embl:CAA71031.1%3B (Y09899) NADH dehydrogenase [Calothrix%3B E%3D1e-106 gb:AAC46302.1%3B (AF038423) NADH dehydrogenase [Mycobacterium%3B E%3D9e-91 COG: slr0851%3B COG1252 NADH dehydrogenase%2C FAD-containing subunit%3B E%3D1e-111 PFAM: PF01494%3B FAD binding domain%3B E%3D0.015 PF00732%3B GMC oxidoreductases%3B E%3D0.067 PF00070%3B Pyridine nucleotide-disulphide%3B E%3D7.9e-33 gene gene3248 http://www.ncbi.nlm.nih.gov/gene/?term=RB5766 RB5768 RB5768 kefA kefA 3018371 3021940 - potassium efflux system KefA PMID: 10202137 best DB hits: BLAST: swissprot:P77338%3B KEFA_ECOLI POTASSIUM EFFLUX SYSTEM KEFA (AEFA%3B E%3D3e-55 gb:AAK02442.1%3B (AE006072) unknown [Pasteurella multocida]%3B E%3D1e-52 swissprot:Q57362%3B YJEP_HAEIN PROTEIN HI0195.1 PRECURSOR -----%3B E%3D9e-49 COG: aefA%3B COG3264 Small-conductance mechanosensitive channel%3B E%3D3e-56 slr0510_1%3B COG0668 Small-conductance mechanosensitive channel%3B E%3D1e-18 PFAM: PF00924%3B Uncharacterized protein family UPF0%3B E%3D1.4e-66 gene gene3249 http://www.ncbi.nlm.nih.gov/gene/?term=RB5768 RB577 RB577 RB577 317961 320072 - hypothetical protein PMID: 10684935 best DB hits: BLAST: pir:G71518%3B hypothetical protein pmpB - Chlamydia trachomatis%3B E%3D4e-07 pir:C81675%3B polymorphic membrane protein BC family TC0694%3B E%3D2e-06 gb:AAG57362.1%3B AE005455_3 (AE005455) ATP-binding%3B E%3D3e-05 PFAM: PF02415%3B Chlamydia protein of unknown functio%3B E%3D0.076 gene gene331 http://www.ncbi.nlm.nih.gov/gene/?term=RB577 RB5771 RB5771 RB5771 3021969 3022139 + hypothetical protein gene gene3250 http://www.ncbi.nlm.nih.gov/gene/?term=RB5771 RB5772 RB5772 RB5772 3022129 3023556 + hypothetical protein gene gene3251 http://www.ncbi.nlm.nih.gov/gene/?term=RB5772 RB5774 RB5774 RB5774 3023580 3025166 + hypothetical protein PMID: 9389475 best DB hits: BLAST: gb:AAB90372.1%3B (AE001044) conserved hypothetical protein%3B E%3D5e-45 pir:E72265%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D3e-44 embl:CAC23290.1%3B (AL512965) conserved hypothetical protein%3B E%3D1e-39 COG: AF0862%3B COG1690 Uncharacterized ACR%3B E%3D5e-46 PFAM: PF01139%3B Uncharacterized protein family%3B E%3D0.00068 gene gene3252 http://www.ncbi.nlm.nih.gov/gene/?term=RB5774 RB5776 RB5776 RB5776 3025207 3026163 - NADH-dependent dehydrogenase PMID: 10086842 best DB hits: BLAST: pir:B72359%3B lipopolysaccharide biosynthesis protein BplA -%3B E%3D3e-27 ddbj:BAB07562.1%3B (AP001520) oxidoreductase [Bacillus halodurans]%3B E%3D5e-26 ddbj:BAB04967.1%3B (AP001511) NADH-dependent dyhydrogenase%3B E%3D3e-23 COG: TM0585%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D3e-28 PFAM: PF01408%3B Oxidoreductase%2C NAD-bin%3B E%3D7.5e-40 PF02894%3B Oxidoreductase%2C C-termi%3B E%3D2.8e-10 gene gene3253 http://www.ncbi.nlm.nih.gov/gene/?term=RB5776 RB5777 RB5777 RB5777 3026126 3026287 + hypothetical protein gene gene3254 http://www.ncbi.nlm.nih.gov/gene/?term=RB5777 RB5778 RB5778 phoA phoA 3026289 3028175 - alkaline phosphatase PMID: 8454193 PMID: 3537962 PMID: 7022451 best DB hits: BLAST: swissprot:P35483%3B PPBH_PSEAE ALKALINE PHOSPHATASE H PRECURSOR%3B E%3D2e-11 pdb:1ANI%3B A Chain A%2C Alkaline Phosphatase (D153h%2C K328h) -----%3B E%3D2e-11 pdb:2ANH%3B A Chain A%2C Alkaline Phosphatase (D153h) ----- pdb:%3B E%3D3e-11 COG: PA3296%3B COG1785 Alkaline phosphatase%3B E%3D2e-12 PFAM: PF00245%3B Alkaline phosphatase%3B E%3D2.2e-09 gene gene3255 http://www.ncbi.nlm.nih.gov/gene/?term=RB5778 RB5779 RB5779 RB5779 3028410 3028973 + hypothetical protein gene gene3256 http://www.ncbi.nlm.nih.gov/gene/?term=RB5779 RB578 RB578 RB578 320069 320230 - hypothetical protein gene gene332 http://www.ncbi.nlm.nih.gov/gene/?term=RB578 RB5780 RB5780 RB5780 3028975 3029472 + response regulator PMID: 7699720 best DB hits: BLAST: pir:D75276%3B response regulator - Deinococcus radiodurans (strain R1)%3B E%3D2e-09 embl:CAB62661.1%3B (AL133422) hypothetical protein SCM1.03c.%3B E%3D4e-08 swissprot:Q55169%3B RCP1_SYNY3 RESPONSE REGULATOR RCP1 -----%3B E%3D4e-08 COG: DR2420%3B COG0784 CheY-like receiver domains%3B E%3D2e-10 VC0790%3B COG2197 Response regulators consisting of a CheY-like%3B E%3D0.002 citB%3B COG2197 Response regulators consisting of a CheY-like receiver%3B E%3D0.004 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D2.1e-10 gene gene3257 http://www.ncbi.nlm.nih.gov/gene/?term=RB5780 RB5781 RB5781 RB5781 3029469 3030296 - hypothetical protein gene gene3258 http://www.ncbi.nlm.nih.gov/gene/?term=RB5781 RB5782 RB5782 trx trx 3030299 3031819 - thioredoxin PMID: 9388228 best DB hits: BLAST: swissprot:P56430%3B THIO_HELPY THIOREDOXIN (TRX) ----- pir:%3B E%3D1e-06 swissprot:P80579%3B THIO_ALIAC THIOREDOXIN (TRX) ----- pdb: 1QUW%3B E%3D5e-06 pir:G75612%3B thioredoxin 1 - Deinococcus radiodurans (strain R1)%3B E%3D1e-05 COG: jhp0763%3B COG0526 Thiol-disulfide isomerase and thioredoxins%3B E%3D1e-07 PA4061%3B COG3118 Thioredoxin domain-containing protein%3B E%3D2e-06 Cj0147c%3B COG0526 Thiol-disulfide isomerase and thioredoxins%3B E%3D6e-06 PFAM: PF00085%3B Thioredoxin%3B E%3D0.00016 gene gene3259 http://www.ncbi.nlm.nih.gov/gene/?term=RB5782 RB5785 RB5785 RB5785 3031853 3032074 - hypothetical protein gene gene3260 http://www.ncbi.nlm.nih.gov/gene/?term=RB5785 RB5786 RB5786 RB5786 3032121 3033506 - TPR repeat-containing protein PMID: 9482716 best DB hits: BLAST: pir:B69196%3B conserved hypothetical protein MTH72 - Methanobacterium%3B E%3D7e-20 pir:F69210%3B conserved hypothetical protein MTH83 - Methanobacterium%3B E%3D3e-15 pir:S74665%3B outer membrane protein mom72%2C 72K - Synechocystis sp.%3B E%3D2e-13 COG: MTH72%3B COG0457 TPR-repeat-containing proteins%3B E%3D7e-21 PFAM: PF00515%3B TPR Domain%3B E%3D0.12 gene gene3261 http://www.ncbi.nlm.nih.gov/gene/?term=RB5786 RB5787 RB5787 RB5787 3033490 3033933 - hypothetical protein PMID: 9180694 best DB hits: BLAST: pir:T14312%3B hypothetical protein - carrot transposon Tdc1 -----%3B E%3D0.54 gene gene3262 http://www.ncbi.nlm.nih.gov/gene/?term=RB5787 RB5788 RB5788 RB5788 3034000 3035802 + ferredoxin PMID: 2185975 best DB hits: BLAST: gb:AAF53358.1%3B (AE003641) CG16885 gene product [Drosophila%3B E%3D0.40 gene gene3263 http://www.ncbi.nlm.nih.gov/gene/?term=RB5788 RB5793 RB5793 RB5793 3035774 3035920 - hypothetical protein gene gene3264 http://www.ncbi.nlm.nih.gov/gene/?term=RB5793 RB5794 RB5794 RB5794 3036089 3036955 - hypothetical protein gene gene3265 http://www.ncbi.nlm.nih.gov/gene/?term=RB5794 RB5795 RB5795 ptsN ptsN 3036936 3037643 - PTS system%2C fructose-specific IIABC component PMID: 7876255 best DB hits: BLAST: pir:A82153%3B PTS system%2C fructose-specific IIABC component VC1822%3B E%3D7e-05 ddbj:BAB03332.1%3B (AB035450) fructose specific permease%3B E%3D2e-04 pir:E82153%3B PTS system%2C fructose-specific IIABC component VC1826%3B E%3D0.001 COG: VC1822_1%3B COG1762 Phosphotransferase system%3B E%3D6e-06 CT290%3B COG1762 Phosphotransferase system mannitol/fructose-specific%3B E%3D1e-04 BH0828_1%3B COG1762 Phosphotransferase system%3B E%3D4e-04 PFAM: PF00359%3B Phosphoenolpyruvate-dependent sug%3B E%3D0.011 gene gene3266 http://www.ncbi.nlm.nih.gov/gene/?term=RB5795 RB5797 RB5797 RB5797 3037748 3039463 + signal peptide gene gene3267 http://www.ncbi.nlm.nih.gov/gene/?term=RB5797 RB580 RB580 RB580 320366 320590 - hypothetical protein gene gene333 http://www.ncbi.nlm.nih.gov/gene/?term=RB580 RB5801 RB5801 rpsO rpsO 3039583 3039852 + 30S ribosomal protein S15 PMID: 6382163 best DB hits: BLAST: gb:AAK05984.1%3B AE006418_4 (AE006418) 30S ribosomal protein S15%3B E%3D2e-14 ddbj:BAB06127.1%3B (AP001515) 30S ribosomal protein S15 [Bacillus%3B E%3D9e-14 swissprot:P21473%3B RS15_BACSU 30S RIBOSOMAL PROTEIN S15 (BS18)%3B E%3D1e-13 COG: BH2408%3B COG0184 Ribosomal protein S15P/S13E%3B E%3D1e-14 PFAM: PF00312%3B Ribosomal protein S15%3B E%3D3.1e-39 gene gene3268 http://www.ncbi.nlm.nih.gov/gene/?term=RB5801 RB5802 RB5802 RB5802 3039864 3040334 + hypothetical protein gene gene3269 http://www.ncbi.nlm.nih.gov/gene/?term=RB5802 RB5804 RB5804 pnp pnp 3040160 3042616 + polynucleotide phosphorylase PMID: 6382163 best DB hits: BLAST: pir:C81161%3B polyribonucleotide nucleotidyltransferase NMB0758%3B E%3D1e-154 pir:C83052%3B polyribonucleotide nucleotidyltransferase PA4740%3B E%3D1e-154 pir:H81943%3B probable polyribonucleotide nucleotidyltransferase (EC%3B E%3D1e-154 COG: NMB0758%3B COG1185 Polyribonucleotide nucleotidyltransferase%3B E%3D1e-155 PFAM: PF01138%3B 3' exoribonuclease%3B E%3D4e-43 PF00013%3B KH domain%3B E%3D5.3e-07 PF00575%3B S1 RNA binding domain%3B E%3D1.7e-15 gene gene3270 http://www.ncbi.nlm.nih.gov/gene/?term=RB5804 RB5806 RB5806 RB5806 3042794 3046204 - hypothetical protein best DB hits: PFAM: PF01436%3B NHL repeat%3B E%3D0.0032 PF00034%3B Cytochrome c%3B E%3D1.1e-06 gene gene3271 http://www.ncbi.nlm.nih.gov/gene/?term=RB5806 RB5811 RB5811 RB5811 3046272 3047141 + hypothetical protein PMID: 11058132 best DB hits: BLAST: ddbj:BAB04428.1%3B (AP001509) BH0709~~unknown conserved protein in%3B E%3D9e-05 pir:T34929%3B hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces%3B E%3D0.53 gene gene3272 http://www.ncbi.nlm.nih.gov/gene/?term=RB5811 RB5813 RB5813 phoD phoD 3047192 3048607 + alkaline phosphatase PMID: 8760916 PMID: 25878 best DB hits: BLAST: swissprot:P42251%3B PPBD_BACSU ALKALINE PHOSPHATASE D PRECURSOR%3B E%3D6e-09 pir:F83157%3B hypothetical protein PA3910 [imported] - Pseudomonas%3B E%3D5e-08 pir:T35097%3B probable secreted alkaline phosphatase - Streptomyces%3B E%3D2e-06 gene gene3273 http://www.ncbi.nlm.nih.gov/gene/?term=RB5813 RB5815 RB5815 RB5815 3048604 3048807 - hypothetical protein gene gene3274 http://www.ncbi.nlm.nih.gov/gene/?term=RB5815 RB5816 RB5816 fucA fucA 3048773 3050641 + alpha-L-fucosidase PMID: 2803312 PMID: 2894306 best DB hits: BLAST: pir:B82515%3B alpha-L-fucosidase XF2714 [imported] - Xylella%3B E%3D4e-71 embl:CAC24067.1%3B (AL512981) Hypothetical [Sulfolobus%3B E%3D3e-67 pir:S10235%3B alpha-L-fucosidase (EC 3.2.1.51) precursor - rat%3B E%3D8e-51 PFAM: PF01120%3B Alpha-L-fucosidase%3B E%3D4.4e-27 gene gene3275 http://www.ncbi.nlm.nih.gov/gene/?term=RB5816 RB5820 RB5820 fucO fucO 3050638 3051705 + L-fucose dehydrogenase PMID: 7765723 PMID: 2553671 best DB hits: BLAST: embl:CAB55711.1%3B (AL117387) possible oxidoreductase [Streptomyces%3B E%3D3e-18 embl:CAC01651.1%3B (AL391072) oxidoreductase [Streptomyces%3B E%3D2e-16 pir:JC2405%3B D-threo-aldose 1-dehydrogenase (EC 1.1.1.122) -%3B E%3D2e-11 COG: BS_iolS%3B COG0667 Predicted oxidoreductases (related to aryl-alcohol%3B E%3D0.005 gene gene3276 http://www.ncbi.nlm.nih.gov/gene/?term=RB5820 RB5821 RB5821 fucP fucP 3051745 3053121 + L-fucose permease PMID: 2553671 PMID: 7783647 best DB hits: BLAST: gb:AAF01487.1%3B AF137263_6 (AF137263) L-fucose permease%3B E%3D1e-106 swissprot:P44776%3B FUCP_HAEIN L-FUCOSE PERMEASE ----- pir:%3B E%3D7e-83 swissprot:P11551%3B FUCP_ECOLI L-FUCOSE PERMEASE ----- pir:%3B E%3D1e-49 COG: HI0610%3B COG0738 Fucose permease%3B E%3D6e-84 gene gene3277 http://www.ncbi.nlm.nih.gov/gene/?term=RB5821 RB5822 RB5822 RB5822 3053157 3053321 - hypothetical protein gene gene3278 http://www.ncbi.nlm.nih.gov/gene/?term=RB5822 RB5824 RB5824 rbgA rbgA 3053289 3054269 + ribosomal biogenesis GTPase essential GTPase%3B functions in ribosome assembly%3B binds a unique part of the 23S rRNA%3B interacts with ribosomal protein L25(Ctc) gene gene3279 http://www.ncbi.nlm.nih.gov/gene/?term=RB5824 RB5825 RB5825 RB5825 3054406 3055293 - dienelactone hydrolase PMID: 7684040 best DB hits: BLAST: pir:F83498%3B hypothetical protein PA1166 [imported] - Pseudomonas%3B E%3D1e-38 pir:B83447%3B hypothetical protein PA1597 [imported] - Pseudomonas%3B E%3D5e-36 pir:T34190%3B hypothetical protein D1022.4 - Caenorhabditis elegans%3B E%3D4e-33 COG: PA1166%3B COG0412 Dienelactone hydrolase and related enzymes%3B E%3D1e-39 VNG0409C%3B COG1506 Dipeptidyl%3B E%3D0.003 PFAM: PF01738%3B Dienelactone hydrolase%3B E%3D2.8e-44 gene gene3280 http://www.ncbi.nlm.nih.gov/gene/?term=RB5825 RB5826 RB5826 RB5826 3055383 3056579 - permease PMID: 8905231 best DB hits: BLAST: pir:S75996%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D2e-05 pir:S77272%3B hypothetical protein slr0882 - Synechocystis sp. (strain%3B E%3D0.023 pir:F72217%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D0.13 COG: sll0496%3B COG0795 Predicted permeases%3B E%3D2e-06 gene gene3281 http://www.ncbi.nlm.nih.gov/gene/?term=RB5826 RB5829 RB5829 RB5829 3056745 3056882 + hypothetical protein gene gene3282 http://www.ncbi.nlm.nih.gov/gene/?term=RB5829 RB583 RB583 RB583 320566 320787 + hypothetical protein gene gene334 http://www.ncbi.nlm.nih.gov/gene/?term=RB583 RB5830 RB5830 cls cls 3056879 3058264 + cardiolipin synthase PMID: 1663113 PMID: 9370333 best DB hits: BLAST: pir:B82971%3B cardiolipin synthase PA5394 [imported] - Pseudomonas%3B E%3D3e-42 swissprot:P71040%3B CLS2_BACSU PROBABLE CARDIOLIPIN SYNTHETASE 2%3B E%3D4e-42 swissprot:P31048%3B CLS_PSEPU PROBABLE CARDIOLIPIN SYNTHETASE%3B E%3D5e-42 COG: PA5394%3B COG1502%3B E%3D2e-43 cls%3B COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiol%3B E%3D9e-32 BS_ywjE%3B COG1502%3B E%3D2e-31 PFAM: PF00614%3B Phospholipase D. Active site motif%3B E%3D1.2e-05 gene gene3283 http://www.ncbi.nlm.nih.gov/gene/?term=RB5830 RB5831 RB5831 RB5831 3058339 3058518 + hypothetical protein gene gene3284 http://www.ncbi.nlm.nih.gov/gene/?term=RB5831 RB5832 RB5832 RB5832 3058478 3060037 + hypothetical protein gene gene3285 http://www.ncbi.nlm.nih.gov/gene/?term=RB5832 RB5834 RB5834 RB5834 3060045 3060473 - hypothetical protein gene gene3286 http://www.ncbi.nlm.nih.gov/gene/?term=RB5834 RB5837 RB5837 RB5837 3060527 3061411 - type-I signal peptidase PMID: 1639057 best DB hits: BLAST: gb:AAD09011.1%3B (AF089862) type-I signal peptidase SipB%3B E%3D1e-11 swissprot:P72365%3B LEP_STAAU SIGNAL PEPTIDASE IB (SPASE IB) (LEADER%3B E%3D2e-09 pir:A69708%3B signal peptidase I sipV - Bacillus subtilis -----%3B E%3D2e-08 COG: BS_sipV%3B COG0681 Signal peptidase I%3B E%3D2e-09 PFAM: PF00461%3B Signal peptidase I%3B E%3D1.8e-11 gene gene3287 http://www.ncbi.nlm.nih.gov/gene/?term=RB5837 RB5839 RB5839 RB5839 3061378 3061746 + hypothetical protein gene gene3288 http://www.ncbi.nlm.nih.gov/gene/?term=RB5839 RB5841 RB5841 RB5841 3061924 3063936 + beta-galactosidase best DB hits: BLAST: pir:T35944%3B probable beta-galactosidase - Streptomyces coelicolor%3B E%3D2e-04 pir:D83558%3B transport protein ExbB2 PA0693 [imported] - Pseudomonas%3B E%3D0.002 gb:AAA59483.1%3B (L34155) epiligrin alpha 3 subunit [Homo sapiens]%3B E%3D0.009 COG: sll0222%3B COG1409 Predicted phosphohydrolases%3B E%3D0.002 gene gene3289 http://www.ncbi.nlm.nih.gov/gene/?term=RB5841 RB5846 RB5846 RB5846 3064164 3065057 + cell wall biosynthesis glycosyltransferase best DB hits: BLAST: pir:S74796%3B hypothetical protein sll1020 - Synechocystis sp. (strain%3B E%3D4e-11 pir:D69148%3B dolichyl-phosphate mannose synthase related protein 2 -%3B E%3D2e-10 gb:AAB90908.1%3B (AE001082) dolichol-P-glucose synthetase%2C %3B E%3D9e-08 COG: sll1020%3B COG0463 Glycosyltransferases involved in cell wall%3B E%3D4e-12 yfbF%3B COG0463 Glycosyltransferases involved in cell wall biogenesis%3B E%3D1e-08 MTH331%3B COG0463 Glycosyltransferases involved in cell wall%3B E%3D2e-08 PFAM: PF00535%3B Glycosyl transferase%3B E%3D2.6e-18 gene gene3290 http://www.ncbi.nlm.nih.gov/gene/?term=RB5846 RB5847 RB5847 apt apt 3065127 3065747 - adenine phosphoribosyltransferase catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis gene gene3291 http://www.ncbi.nlm.nih.gov/gene/?term=RB5847 RB5848 RB5848 dksA dksA 3065906 3066328 - DnaK suppressor protein PMID: 2180916 best DB hits: BLAST: pir:D71366%3B probable dnaK suppressor - syphilis spirochete -----%3B E%3D1e-09 pir:T34677%3B hypothetical protein SC1A9.28c SC1A9.28c - Streptomyces%3B E%3D9e-07 pir:E81429%3B dksA-like protein Cj0125c [imported] - Campylobacter%3B E%3D5e-06 COG: TP0096%3B COG1734 DnaK suppressor protein%3B E%3D1e-10 PFAM: PF01258%3B Prokaryotic dksA/traR C4-type zi%3B E%3D5e-10 gene gene3292 http://www.ncbi.nlm.nih.gov/gene/?term=RB5848 RB5850 RB5850 RB5850 3066307 3066498 - hypothetical protein gene gene3293 http://www.ncbi.nlm.nih.gov/gene/?term=RB5850 RB5851 RB5851 RB5851 3066461 3066676 - hypothetical protein gene gene3294 http://www.ncbi.nlm.nih.gov/gene/?term=RB5851 RB5852 RB5852 RB5852 3066813 3070673 + hypothetical protein PMID: 9208928 best DB hits: BLAST: ddbj:BAA22069.1%3B (D89992) myosin heavy chain [Cyprinus carpio]%3B E%3D0.001 gb:AAD52842.1%3B AF134172_1 (AF134172) myosin heavy chain [Pecten%3B E%3D0.001 gb:AAB03661.1%3B (U59295) myosin heavy chain [Placopecten%3B E%3D0.001 PFAM: PF00498%3B FHA domain%3B E%3D3.4e-05 gene gene3295 http://www.ncbi.nlm.nih.gov/gene/?term=RB5852 RB5856 RB5856 adh adh 3070709 3071869 - alcohol dehydrogenase PMID: 4578954 best DB hits: BLAST: pir:G72376%3B alcohol dehydrogenase%2C zinc-containing - Thermotoga%3B E%3D7e-23 gb:AAF17283.1%3B (AF204805) NosE [Nostoc sp. GSV224]%3B E%3D9e-19 ddbj:BAB10455.1%3B (AB005234) alcohol dehydrogenase-like protein%3B E%3D1e-18 COG: TM0436%3B COG1063 Threonine dehydrogenase and related Zn-dependent%3B E%3D7e-24 NMB0546%3B COG1064 Zn-dependent alcohol dehydrogenases%3B E%3D3e-15 PA2188%3B COG1063 Threonine dehydrogenase and related Zn-dependent%3B E%3D3e-15 PFAM: PF00899%3B ThiF family%3B E%3D0.34 PF02032%3B Phytoene dehydrogenase related%3B E%3D0.1 PF01494%3B FAD binding domain%3B E%3D0.0065 gene gene3296 http://www.ncbi.nlm.nih.gov/gene/?term=RB5856 RB5858 RB5858 RB5858 3071842 3072543 - transcriptional regulator best DB hits: BLAST: pir:F69187%3B epoxidase - Methanobacterium thermoautotrophicum (strain%3B E%3D3e-08 pir:A83618%3B probable transcriptional regulator PA0225 [imported] -%3B E%3D5e-06 pir:E69193%3B conserved hypothetical protein MTH700 - Methanobacterium%3B E%3D1e-05 COG: MTH659%3B COG1396 Predicted transcriptional regulators%3B E%3D3e-09 PFAM: PF01381%3B Helix-turn-helix%3B E%3D1.7e-10 gene gene3297 http://www.ncbi.nlm.nih.gov/gene/?term=RB5858 RB5860 RB5860 RB5860 3072559 3073902 + hypothetical protein best DB hits: BLAST: gb:AAG26463.1%3B AF285774_3 (AF285774) unknown [Bacteroides%3B E%3D5e-64 gb:AAD40705.1%3B AF048749_1 (AF048749) unknown [Bacteroides%3B E%3D3e-36 gene gene3298 http://www.ncbi.nlm.nih.gov/gene/?term=RB5860 RB5861 RB5861 RB5861 3073915 3075117 + oxidase best DB hits: BLAST: embl:CAB63337.1%3B (AL032631) contains similarity to Pfam domain:%3B E%3D1e-06 gb:AAF57796.1%3B (AE003802) CG6385 gene product [Drosophila%3B E%3D2e-04 ddbj:BAB05760.1%3B (AP001514) BH2041~~unknown conserved protein%3B E%3D0.004 COG: BH2041%3B COG0665 Glycine/D-amino acid oxidases (deaminating)%3B E%3D3e-04 PFAM: PF00070%3B Pyridine nucleotide-disulphid%3B E%3D0.0033 PF02032%3B Phytoene dehydrogenase relate%3B E%3D0.00044 gene gene3299 http://www.ncbi.nlm.nih.gov/gene/?term=RB5861 RB5862 RB5862 RB5862 3075071 3075802 + phosphatase best DB hits: BLAST: pdb:1FEZ%3B A Chain A%2C The Crystal Structure Of Bacillus Cereus%3B E%3D2e-07 gb:AAC14004.1%3B (U33059) phosphatase [Actinosynnema pretiosum%3B E%3D8e-07 embl:CAA94730.1%3B (Z70724) ORF2 [Streptomyces lividans]%3B E%3D3e-06 COG: VCA0606%3B COG1011 Predicted hydrolases of the HAD superfamily%3B E%3D5e-06 BH3587%3B COG0546 Predicted phosphatases%3B E%3D2e-04 PFAM: PF00702%3B haloacid dehalogenase-like hydrolas%3B E%3D2.8e-18 gene gene3300 http://www.ncbi.nlm.nih.gov/gene/?term=RB5862 RB5866 RB5866 RB5866 3076242 3077567 + transposase PMID: 1662761 best DB hits: BLAST: gb:AAG60893.1%3B AF322013_12 (AF322013) ID460 [Bradyrhizobium%3B E%3D8e-34 gb:AAD45539.1%3B U70376_1 (U70376) InsA [Streptomyces netropsis]%3B E%3D4e-33 ddbj:BAA19966.1%3B (D63923) transposase [Acetobacter pasteurianus]%3B E%3D2e-27 gene gene3301 http://www.ncbi.nlm.nih.gov/gene/?term=RB5866 RB5867 RB5867 RB5867 3077578 3077730 + hypothetical protein gene gene3302 http://www.ncbi.nlm.nih.gov/gene/?term=RB5867 RB5869 RB5869 RB5869 3077796 3078569 - bacterioferritin comigratory protein (Bcp) best DB hits: BLAST: embl:CAA86239.1%3B (Z38113) orf%2C len: 215%2C CAI: 0.14%2C similar to%3B E%3D2e-04 ddbj:BAB01069.1%3B (AB023041) peroxiredoxin Q-like protein%3B E%3D0.011 embl:CAB09905.1%3B (Z97179) Bcp [Mycobacterium leprae]%3B E%3D0.032 COG: YIL010w%3B COG1225 Peroxiredoxins%3B E%3D2e-05 PFAM: PF00578%3B AhpC/TSA family%3B E%3D0.037 gene gene3303 http://www.ncbi.nlm.nih.gov/gene/?term=RB5869 RB5871 RB5871 ftsH ftsH 3078660 3080117 - cell division protein FtsH-like protein best DB hits: BLAST: swissprot:P72991%3B FTH4_SYNY3 CELL DIVISION PROTEIN FTSH HOMOLOG 4%3B E%3D5e-20 gb:AAG19776.1%3B (AE005063) cell division cycle protein%3B Cdc48b%3B E%3D9e-20 gb:AAF69154.1%3B AC007915_6 (AC007915) F27F5.8 [Arabidopsis%3B E%3D2e-19 COG: slr1604%3B COG0465 ATP-dependent Zn proteases%3B E%3D4e-21 VNG1472G%3B COG0464 ATPases of the AAA+ class%3B E%3D8e-21 PH0201%3B COG1222 ATP-dependent 26S proteasome regulatory subunit%3B E%3D3e-20 PFAM: PF01695%3B IstB-like ATP binding protein%3B E%3D0.25 PF00910%3B RNA helicase%3B E%3D0.35 PF00004%3B ATPase associated with va%3B E%3D8.6e-30 gene gene3304 http://www.ncbi.nlm.nih.gov/gene/?term=RB5871 RB5872 RB5872 RB5872 3080059 3080310 + hypothetical protein gene gene3305 http://www.ncbi.nlm.nih.gov/gene/?term=RB5872 RB5873 RB5873 RB5873 3080332 3080766 - hypothetical protein PMID: 11792842 best DB hits: PFAM: PF01137%3B RNA 3'-terminal phosphate cyclase%3B E%3D0.31 gene gene3306 http://www.ncbi.nlm.nih.gov/gene/?term=RB5873 RB5874 RB5874 RB5874 3080798 3080941 - hypothetical protein gene gene3307 http://www.ncbi.nlm.nih.gov/gene/?term=RB5874 RB5875 RB5875 RB5875 3080920 3081204 - hypothetical protein gene gene3308 http://www.ncbi.nlm.nih.gov/gene/?term=RB5875 RB5876 RB5876 RB5876 3081263 3082249 - serine/threonine-protein kinase PMID: 7768349 best DB hits: BLAST: swissprot:P54737%3B PKN5_MYXXA SERINETHREONINE-PROTEIN KINASE PKN5%3B E%3D3e-09 gb:AAF87930.1%3B AF163841_9 (AF163841) serinethreonine%3B E%3D4e-09 swissprot:P54738%3B PKN6_MYXXA SERINETHREONINE-PROTEIN KINASE PKN6%3B E%3D1e-07 COG: Rv0014c_1%3B COG0515 Serine/threonine protein kinases%3B E%3D1e-07 PFAM: PF00069%3B Protein kinase domain%3B E%3D3.8e-08 PF01130%3B CD36 family%3B E%3D0.61 gene gene3309 http://www.ncbi.nlm.nih.gov/gene/?term=RB5876 RB5877 RB5877 RB5877 3082302 3082409 + hypothetical protein gene gene3310 http://www.ncbi.nlm.nih.gov/gene/?term=RB5877 RB5878 RB5878 RB5878 3082501 3082635 - hypothetical protein gene gene3311 http://www.ncbi.nlm.nih.gov/gene/?term=RB5878 RB588 RB588 RB588 320892 324914 + hypothetical protein gene gene335 http://www.ncbi.nlm.nih.gov/gene/?term=RB588 RB5880 RB5880 RB5880 3082619 3083017 - hypothetical protein best DB hits: BLAST: embl:CAB55661.1%3B (AL117385) hypothetical protein [Streptomyces%3B E%3D0.38 PFAM: PF00903%3B Glyoxalase/Bleomycin resistance%3B E%3D0.00027 gene gene3312 http://www.ncbi.nlm.nih.gov/gene/?term=RB5880 RB5881 RB5881 RB5881 3082965 3083636 - transcriptional regulator best DB hits: BLAST: embl:CAB75424.1%3B (AJ271623) ORF101~~shows homology to one ORF%3B E%3D3e-04 embl:CAB53171.1%3B (AL109969) transcriptional regulator%3B E%3D9e-04 PFAM: PF01381%3B Helix-turn-helix%3B E%3D2.5e-05 gene gene3313 http://www.ncbi.nlm.nih.gov/gene/?term=RB5881 RB5882 RB5882 RB5882 3083599 3084330 - hypothetical protein gene gene3314 http://www.ncbi.nlm.nih.gov/gene/?term=RB5882 RB5884 RB5884 RB5884 3084242 3084823 - transcriptional regulator PMID: 9278503 best DB hits: BLAST: swissprot:P76068%3B YNAK_ECOLI HYPOTHETICAL 9.8 KD PROTEIN IN%3B E%3D5e-05 pir:T31008%3B hypothetical protein 422 - Sulfolobus sp. plasmid pNOB8%3B E%3D1e-04 pir:T31049%3B hypothetical protein 470 - Sulfolobus sp. plasmid pNOB8%3B E%3D0.001 COG: ynaK%3B COG1475 Predicted transcriptional regulators%3B E%3D5e-06 PFAM: PF02195%3B ParB-like nuclease domain%3B E%3D1.1e-10 gene gene3315 http://www.ncbi.nlm.nih.gov/gene/?term=RB5884 RB5886 RB5886 RB5886 3084898 3086475 - hypothetical protein gene gene3316 http://www.ncbi.nlm.nih.gov/gene/?term=RB5886 RB5887 RB5887 RB5887 3086465 3087343 - transposase PMID: 10384242 best DB hits: BLAST: gb:AAA88919.1%3B (U13013) ORFB [Leptospira interrogans]%3B E%3D1e-46 gb:AAA88916.1%3B (U13012) ORFB [Leptospira interrogans]%3B E%3D5e-46 gb:AAC05649.1%3B (AF038931) probable transposase-related protein%3B E%3D6e-45 COG: DRB0019.2%3B COG2801 transposase%3B E%3D1e-35 PFAM: PF00665%3B Integrase core domain%3B E%3D4.8e-40 gene gene3317 http://www.ncbi.nlm.nih.gov/gene/?term=RB5887 RB5888 RB5888 RB5888 3087346 3087636 - transposase A PMID: 2824781 best DB hits: BLAST: gb:AAG58100.1%3B AE005527_3 (AE005527) unknown protein encoded by%3B E%3D0.002 gb:AAG53987.1%3B AF327445_1 (AF327445) transposase A%3B E%3D0.003 gb:AAF28119.1%3B AF153317_15 (AF153317) InsA [Shigella%3B E%3D0.007 COG: PA1937%3B COG2963 Transposase%3B E%3D0.004 PFAM: PF01381%3B Helix-turn-helix%3B E%3D0.53 PF01527%3B Transposase%3B E%3D6.1e-18 gene gene3318 http://www.ncbi.nlm.nih.gov/gene/?term=RB5888 RB5892 RB5892 RB5892 3087578 3087817 + hypothetical protein gene gene3319 http://www.ncbi.nlm.nih.gov/gene/?term=RB5892 RB5895 RB5895 RB5895 3088294 3090420 - hypothetical protein PMID: 11832943 best DB hits: BLAST: pir:F81221%3B hypothetical protein NMB0240 [imported] - Neisseria%3B E%3D0.018 pir:H81992%3B probable integral membrane protein NMA0020 [imported] -%3B E%3D0.018 embl:CAB95777.1%3B (AL359949) hypothetical protein [Streptomyces%3B E%3D0.20 gene gene3321 http://www.ncbi.nlm.nih.gov/gene/?term=RB5895 RB5896 RB5896 RB5896 3090375 3090551 + hypothetical protein gene gene3322 http://www.ncbi.nlm.nih.gov/gene/?term=RB5896 RB5897 RB5897 trx trx 3090681 3091814 - protein disulfide-isomerase best DB hits: BLAST: pir:D69100%3B probable protein disulfide-isomerase (EC 5.3.4.1)%3B E%3D7e-07 gb:AAG20098.1%3B (AE005089) Vng1905c [Halobacterium sp. NRC-1]%3B E%3D9e-05 gb:AAB89512.1%3B (AE000983) conserved hypothetical protein%3B E%3D1e-04 COG: MTH1745%3B COG0526 Thiol-disulfide isomerase and thioredoxins%3B E%3D6e-08 VNG1905C%3B COG1331 Highly conserved protein containing a thioredoxin%3B E%3D9e-06 VCA0647%3B COG3350 Uncharacterized ACR%3B E%3D0.009 gene gene3323 http://www.ncbi.nlm.nih.gov/gene/?term=RB5897 RB5899 RB5899 RB5899 3091748 3092014 - hypothetical protein gene gene3324 http://www.ncbi.nlm.nih.gov/gene/?term=RB5899 RB59 RB59 RB59 24939 25208 - hypothetical protein gene gene33 http://www.ncbi.nlm.nih.gov/gene/?term=RB59 RB5901 RB5901 RB5901 3092170 3094272 - hypothetical protein best DB hits: PFAM: PF00092%3B von Willebrand factor type A%3B E%3D0.0045 gene gene3325 http://www.ncbi.nlm.nih.gov/gene/?term=RB5901 RB5903 RB5903 RB5903 3094315 3094491 + hypothetical protein gene gene3326 http://www.ncbi.nlm.nih.gov/gene/?term=RB5903 RB5905 RB5905 RB5905 3094488 3095168 + serine/threonine protein phosphatase PMID: 9130712 best DB hits: BLAST: pir:A72340%3B serinethreonine protein phosphatase - Thermotoga%3B E%3D4e-22 gb:AAB68789.1%3B (U97022) orf%3B similar to serinethreonine protein%3B E%3D7e-22 pir:S75676%3B probable phosphoesterase (EC 3.1.-.-) sll1387 -%3B E%3D4e-20 COG: TM0742%3B COG0639 Diadenosine tetraphosphatase and related%3B E%3D3e-23 gene gene3327 http://www.ncbi.nlm.nih.gov/gene/?term=RB5905 RB5907 RB5907 RB5907 3095195 3095761 - signal peptide gene gene3328 http://www.ncbi.nlm.nih.gov/gene/?term=RB5907 RB5908 RB5908 RB5908 3095758 3096315 - hypothetical protein best DB hits: BLAST: swissprot:P31589%3B GSPJ_ERWCA GENERAL SECRETION PATHWAY PROTEIN J%3B E%3D0.64 gene gene3329 http://www.ncbi.nlm.nih.gov/gene/?term=RB5908 RB5909 RB5909 RB5909 3096300 3096749 - hypothetical protein gene gene3330 http://www.ncbi.nlm.nih.gov/gene/?term=RB5909 RB5913 RB5913 RB5913 3096746 3097234 - signal peptide gene gene3331 http://www.ncbi.nlm.nih.gov/gene/?term=RB5913 RB5914 RB5914 RB5914 3097264 3097434 + hypothetical protein gene gene3332 http://www.ncbi.nlm.nih.gov/gene/?term=RB5914 RB5915 RB5915 RB5915 3097446 3097778 - hypothetical protein gene gene3333 http://www.ncbi.nlm.nih.gov/gene/?term=RB5915 RB5918 RB5918 birA birA 3097957 3098715 - bifunctional protein BirA PMID: 3899863 PMID: 1409631 best DB hits: BLAST: gb:AAK05878.1%3B AE006408_2 (AE006408) bifunctional protein BirA (EC%3B E%3D1e-17 pir:A83112%3B BirA bifunctional protein PA4280 [imported] -%3B E%3D1e-16 swissprot:P29906%3B BIRA_PARDE BIOTIN--[ACETYL-COA-CARBOXYLASE]%3B E%3D6e-15 COG: PA4280_2%3B COG0340 Biotin-(acetyl-CoA carboxylase) ligase%3B E%3D1e-17 PFAM: PF01317%3B Biotin protein ligase catalytic doma%3B E%3D6.2e-30 PF02237%3B Biotin protein ligase C terminal dom%3B E%3D5.4e-05 gene gene3334 http://www.ncbi.nlm.nih.gov/gene/?term=RB5918 RB5920 RB5920 RB5920 3098712 3100763 - hypothetical protein PMID: 10322433 best DB hits: BLAST: swissprot:Q00808%3B HET1_PODAN VEGETATIBLE INCOMPATIBILITY PROTEIN%3B E%3D3e-25 swissprot:P49695%3B PKWA_THECU SERINETHREONINE-PROTEIN%3B E%3D5e-21 swissprot:Q9UGP9%3B WDR5_HUMAN WD-REPEAT PROTEIN 5 ----- embl:%3B E%3D8e-20 COG: slr0143_2%3B COG2319 WD40 repeat protein%3B E%3D1e-16 PFAM: PF00400%3B WD domain%2C G-beta repeat%3B E%3D0.0064 gene gene3335 http://www.ncbi.nlm.nih.gov/gene/?term=RB5920 RB5921 RB5921 RB5921 3100793 3103288 - surface protein best DB hits: BLAST: gb:AAB53736.1%3B (U95056) surface protein Lk90 [Leptospira%3B E%3D0.38 PFAM: PF02368%3B Bacterial Ig-like domain (grou%3B E%3D6.3e-05 gene gene3336 http://www.ncbi.nlm.nih.gov/gene/?term=RB5921 RB5924 RB5924 RB5924 3103285 3105828 - serine protease best DB hits: BLAST: pir:A75582%3B serine proteinase%2C subtilase - Deinococcus%3B E%3D0.003 COG: DRA0283%3B COG1404 Subtilisin-like serine proteases%3B E%3D3e-04 PFAM: PF00630%3B Filamin/ABP280 repeat.%3B E%3D0.16 gene gene3337 http://www.ncbi.nlm.nih.gov/gene/?term=RB5924 RB5927 RB5927 RB5927 3105905 3107242 - sulfatase PMID: 11823852 gene gene3338 http://www.ncbi.nlm.nih.gov/gene/?term=RB5927 RB5929 RB5929 RB5929 3107256 3107480 + hypothetical protein gene gene3339 http://www.ncbi.nlm.nih.gov/gene/?term=RB5929 RB5930 RB5930 RB5930 3107566 3108216 - hypothetical protein gene gene3340 http://www.ncbi.nlm.nih.gov/gene/?term=RB5930 RB5932 RB5932 RB5932 3108299 3110278 - polyprenyl synthetase PMID: 8182085 PMID: 2198286 best DB hits: BLAST: pir:E71101%3B probable geranylgeranyl pyrophosphate synthetase -%3B E%3D9e-17 gb:AAD47627.1%3B (AF153713) octylprenyl diphosphate synthase-like%3B E%3D1e-16 swissprot:Q53479%3B IDSA_METTM BIFUNCTIONAL SHORT CHAIN ISOPRENYL%3B E%3D2e-15 COG: PH1072%3B COG0142 Geranylgeranyl pyrophosphate synthase%3B E%3D9e-18 AF0204%3B COG1852 Uncharacterized ArCR%3B E%3D3e-13 NMB0261%3B COG0142 Geranylgeranyl pyrophosphate synthase%3B E%3D4e-13 PFAM: PF01976%3B Protein of unknown function D%3B E%3D6e-24 PF00348%3B Polyprenyl synthetase%3B E%3D3.4e-09 gene gene3341 http://www.ncbi.nlm.nih.gov/gene/?term=RB5932 RB5934 RB5934 shc shc 3110275 3112260 - squalene-hopene cyclase PMID: 7894707 best DB hits: BLAST: pir:T35404%3B probable squalene-hopene cyclase - Streptomyces%3B E%3D6e-15 embl:CAA71101.1%3B (Y09979) squalene-hopene cyclase%3B E%3D1e-14 swissprot:P55348%3B SQHC_RHISN PROBABLE SQUALENE--HOPENE CYCLASE%3B E%3D2e-11 COG: slr2089%3B COG1657 Squalene cyclase%3B E%3D4e-09 PFAM: PF00432%3B Prenyltransferase and squalene ox%3B E%3D1.5e-06 gene gene3342 http://www.ncbi.nlm.nih.gov/gene/?term=RB5934 RB5937 RB5937 RB5937 3112147 3113067 + hypothetical protein gene gene3343 http://www.ncbi.nlm.nih.gov/gene/?term=RB5937 RB5938 RB5938 RB5938 3112372 3113484 - signal peptide gene gene3344 http://www.ncbi.nlm.nih.gov/gene/?term=RB5938 RB5939 RB5939 RB5939 3113462 3113581 + hypothetical protein gene gene3345 http://www.ncbi.nlm.nih.gov/gene/?term=RB5939 RB5940 RB5940 tadA tadA 3113588 3114967 + secretion system protein TadA PMID: 8438237 PMID: 11566992 best DB hits: BLAST: gb:AAB36933.1%3B (U77780) secretory protein kinase [Chlorobium%3B E%3D1e-118 gb:AAF40195.1%3B AF229646_7 (AF229646) CpaF [Caulobacter crescentus]%3B E%3D1e-108 gb:AAD38172.2%3B AF152598_1 (AF152598) TadA [Actinobacillus%3B E%3D1e-101 COG: PA4302%3B COG0630 Predicted ATPases involved in pili and flagella%3B E%3D2e-92 PFAM: PF00004%3B ATPase associated with%3B E%3D0.6 PF01580%3B FtsK/SpoIIIE family%3B E%3D0.017 PF01443%3B Viral (Superfamily 1) RNA hel%3B E%3D0.48 gene gene3346 http://www.ncbi.nlm.nih.gov/gene/?term=RB5940 RB5941 RB5941 tadB tadB 3115005 3116048 + secretion system protein TadB PMID: 10880436 best DB hits: BLAST: gb:AAF40196.1%3B AF229646_8 (AF229646) TadB [Caulobacter crescentus]%3B E%3D2e-19 pir:D83108%3B hypothetical protein PA4301 [imported] - Pseudomonas%3B E%3D5e-12 embl:CAB92603.1%3B (AL356813) integral membrane protein%3B E%3D2e-09 COG: PA4301%3B COG2064 Predicted membrane protein%3B E%3D5e-13 gene gene3347 http://www.ncbi.nlm.nih.gov/gene/?term=RB5941 RB5942 RB5942 tadC tadC 3116114 3117100 + secretion system protein TadC PMID: 10880436 best DB hits: BLAST: embl:CAB92604.1%3B (AL356813) integral membrane protein%3B E%3D6e-09 gb:AAK02931.1%3B (AE006123) TadC [Pasteurella multocida]%3B E%3D2e-08 pir:C83108%3B hypothetical protein PA4300 [imported] - Pseudomonas%3B E%3D3e-08 COG: PH0653%3B COG2064 Predicted membrane protein%3B E%3D3e-05 gene gene3348 http://www.ncbi.nlm.nih.gov/gene/?term=RB5942 RB5943 RB5943 RB5943 3117148 3117546 - response regulator PMID: 7699720 PMID: 1454550 best DB hits: BLAST: embl:CAA47908.1%3B (X67676) phoP [Bacillus subtilis]%3B E%3D1e-15 gb:AAA22661.1%3B (M16775) phoP protein (put.)%3B [Bacillus%3B E%3D1e-15 swissprot:P13792%3B PHOP_BACSU ALKALINE PHOSPHATASE SYNTHESIS%3B E%3D1e-15 COG: BS_phoP%3B COG0745 Response regulators consisting of a CheY-like%3B E%3D1e-16 sll0043_4%3B COG0784 CheY-like receiver domains%3B E%3D4e-15 Rv0757%3B COG0745 Response regulators consisting of a CheY-like%3B E%3D4e-15 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D4.8e-28 gene gene3349 http://www.ncbi.nlm.nih.gov/gene/?term=RB5943 RB5945 RB5945 RB5945 3117554 3118402 - hypothetical protein best DB hits: BLAST: ddbj:BAA75358.1%3B (AB013363) YvaM [Bacillus halodurans] -----%3B E%3D0.63 PFAM: PF02230%3B Phospholipase/Carboxylesterase%3B E%3D0.0014 gene gene3350 http://www.ncbi.nlm.nih.gov/gene/?term=RB5945 RB5948 RB5948 adh adh 3118447 3119487 - Zn-dependent alcohol dehydrogenase PMID: 3622514 best DB hits: BLAST: prf:2104227E%3B 2%2C3-butanediol dehydrogenase [Pseudomonas putida]%3B E%3D3e-40 pir:C83128%3B 2%2C3-butanediol dehydrogenase PA4153 [imported] -%3B E%3D4e-40 ddbj:BAB03906.1%3B (AP001507) sorbitol dehydrogenase [Bacillus%3B E%3D1e-38 COG: PA4153%3B COG1063 Threonine dehydrogenase and related Zn-dependent%3B E%3D4e-41 Rv3086%3B COG1062 Zn-dependent alcohol dehydrogenases%2C class III%3B E%3D7e-26 PFAM: PF00107%3B Zinc-binding dehydrogenases%3B E%3D4.4e-92 gene gene3351 http://www.ncbi.nlm.nih.gov/gene/?term=RB5948 RB5952 RB5952 RB5952 3119900 3121381 + hypothetical protein best DB hits: BLAST: pir:T50226%3B hypothetical protein SPAC607.06c [imported] - fission%3B E%3D1e-19 embl:CAA86272.1%3B (Z38125) orf%2C len: 696%2C CAI: 0.15 [Saccharomyces%3B E%3D3e-13 pir:T42995%3B hypothetical protein - fission yeast%3B E%3D4e-10 gene gene3352 http://www.ncbi.nlm.nih.gov/gene/?term=RB5952 RB5955 RB5955 RB5955 3121488 3122021 + signal peptide gene gene3353 http://www.ncbi.nlm.nih.gov/gene/?term=RB5955 RB5957 RB5957 RB5957 3122093 3122557 + hypothetical protein gene gene3354 http://www.ncbi.nlm.nih.gov/gene/?term=RB5957 RB5960 RB5960 RB5960 3122679 3124154 - signal peptide gene gene3355 http://www.ncbi.nlm.nih.gov/gene/?term=RB5960 RB5961 RB5961 RB5961 3124275 3124895 - ferripyochelin-binding protein best DB hits: BLAST: pir:B75318%3B ferripyochelin-binding protein - Deinococcus radiodurans%3B E%3D1e-38 gb:AAB88579.1%3B (M82832) unknown [Pseudomonas aeruginosa]%3B E%3D2e-34 swissprot:P40882%3B Y1F3_PSEAE HYPOTHETICAL PROTEIN PA3753 -----%3B E%3D2e-34 COG: DR2089%3B COG0663 Carbonic anhydrases/acetyltransferases%2C isoleucine%3B E%3D1e-39 PFAM: PF00132%3B Bacterial transferase hexapeptide (f%3B E%3D0.67 gene gene3356 http://www.ncbi.nlm.nih.gov/gene/?term=RB5961 RB5963 RB5963 RB5963 3125043 3125837 + hypothetical protein gene gene3357 http://www.ncbi.nlm.nih.gov/gene/?term=RB5963 RB5964 RB5964 RB5964 3125819 3128293 - response regulatory protein best DB hits: BLAST: pir:H70302%3B conserved hypothetical protein aq_035 - Aquifex aeolicus%3B E%3D1e-28 pir:A71678%3B probable response regulatory protein RP237 - Rickettsia%3B E%3D3e-26 pir:E72220%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D1e-24 COG: aq_035_2%3B COG2199 Diguanylate cyclase/phosphodiesterase domain 1%3B E%3D1e-29 TM1699_2%3B COG2206 HD-GYP domain%3B E%3D1e-24 aq_563_2%3B COG2199 Diguanylate cyclase/phosphodiesterase domain 1%3B E%3D2e-24 PFAM: PF01966%3B HD domain%3B E%3D6.6e-08 PF00989%3B PAS domain%3B E%3D0.032 PF00990%3B GGDEF domain%3B E%3D3.6e-53 gene gene3358 http://www.ncbi.nlm.nih.gov/gene/?term=RB5964 RB5966 RB5966 RB5966 3128115 3128537 + hypothetical protein gene gene3359 http://www.ncbi.nlm.nih.gov/gene/?term=RB5966 RB5967 RB5967 RB5967 3128254 3128520 - hypothetical protein gene gene3360 http://www.ncbi.nlm.nih.gov/gene/?term=RB5967 RB5968 RB5968 RB5968 3128602 3129225 + RNA polymerase sigma-E factor best DB hits: BLAST: pir:B72234%3B RNA polymerase sigma-E factor - Thermotoga maritima%3B E%3D0.42 gb:AAC14121.1%3B (AF056199) sigma factor E [Streptomyces%3B E%3D0.80 PFAM: PF00140%3B Sigma-70 factor%3B E%3D4.9e-05 PF00196%3B Bacterial regulatory proteins%2C%3B E%3D0.19 gene gene3361 http://www.ncbi.nlm.nih.gov/gene/?term=RB5968 RB5969 RB5969 recQ recQ 3129301 3131550 + ATP-dependent DNA helicase RecQ PMID: 3027506 best DB hits: BLAST: pir:E83226%3B ATP-dependent DNA helicase RecQ PA3344 [imported] -%3B E%3D1e-127 pir:T34609%3B probable helicase - Streptomyces coelicolor -----%3B E%3D1e-126 pir:G75413%3B DNA helicase RecQ - Deinococcus radiodurans (strain R1)%3B E%3D1e-125 COG: PA3344%3B COG0514 Superfamily II DNA helicase%3B E%3D1e-128 slr0083%3B COG0513 Superfamily II DNA and RNA helicases%3B E%3D1e-12 PFAM: PF00271%3B Helicase conserved C-terminal dom%3B E%3D0.15 PF00270%3B DEAD/DEAH box helicase%3B E%3D2.2e-29 PF00271%3B Helicase conserved C-terminal dom%3B E%3D1.9e-25 gene gene3362 http://www.ncbi.nlm.nih.gov/gene/?term=RB5969 RB5971 RB5971 rbsC rbsC 3131592 3132572 - ribose transport system permease RbsC PMID: 7921236 best DB hits: BLAST: pir:H83402%3B membrane protein component of ABC ribose transporter%3B E%3D2e-51 gb:AAK02238.1%3B (AE006050) RbsC [Pasteurella multocida]%3B E%3D2e-24 swissprot:P44736%3B RBSC_HAEIN RIBOSE TRANSPORT SYSTEM PERMEASE%3B E%3D3e-24 COG: PA1948%3B COG1172 Ribose/xylose/arabinose/galactoside ABC-type%3B E%3D1e-52 rbsC%3B COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport%3B E%3D2e-20 TM0112%3B COG1172 Ribose/xylose/arabinose/galactoside ABC-type%3B E%3D5e-17 PFAM: PF02653%3B Branched-chain amino acid transp%3B E%3D0.58 gene gene3363 http://www.ncbi.nlm.nih.gov/gene/?term=RB5971 RB5972 RB5972 rbsA rbsA 3132545 3134113 - ribose transport ATP-binding protein RbsA PMID: 3086314 best DB hits: BLAST: pir:G83402%3B ribose transport protein RbsA PA1947 [imported] -%3B E%3D1e-103 gb:AAK05735.1%3B AE006394_5 (AE006394) ribose ABC transporter ATP%3B E%3D3e-85 pir:E72314%3B ribose ABC transporter ATP-binding protein - Thermotoga%3B E%3D4e-83 COG: PA1947%3B COG1129 ABC-type sugar (aldose) transport system%2C ATPase%3B E%3D1e-104 PFAM: PF00005%3B ABC transporter%3B E%3D4.5e-45 gene gene3364 http://www.ncbi.nlm.nih.gov/gene/?term=RB5972 RB5973 RB5973 rbsB rbsB 3134110 3135243 - D-ribose-binding periplasmic protein PMID: 6313683 best DB hits: BLAST: pir:F83402%3B binding protein component precursor of ABC ribose%3B E%3D4e-88 gb:AAK03409.1%3B (AE006170) unknown [Pasteurella multocida]%3B E%3D3e-42 pir:C82497%3B ribose ABC transporter%2C periplasmic D-ribose-binding%3B E%3D6e-29 COG: PA1946%3B COG1879 Periplasmic sugar-binding proteins%3B E%3D4e-89 BH3727%3B COG1609 Transcriptional regulators%3B E%3D4e-09 HI1111%3B COG1879 Periplasmic sugar-binding proteins%3B E%3D5e-08 PFAM: PF00532%3B Periplasmic binding proteins%3B E%3D1.3e-11 gene gene3365 http://www.ncbi.nlm.nih.gov/gene/?term=RB5973 RB5976 RB5976 RB5976 3135318 3135482 + hypothetical protein gene gene3366 http://www.ncbi.nlm.nih.gov/gene/?term=RB5976 RB5979 RB5979 RB5979 3135599 3136117 + signal peptide gene gene3367 http://www.ncbi.nlm.nih.gov/gene/?term=RB5979 RB598 RB598 RB598 324950 326290 + signal peptide gene gene336 http://www.ncbi.nlm.nih.gov/gene/?term=RB598 RB5982 RB5982 RB5982 3136114 3137451 + ATP/ADP translocase PMID: 20365717 best DB hits: BLAST: pir:H82642%3B hypothetical protein XF1738 [imported] - Xylella%3B E%3D3e-46 ddbj:BAB09974.1%3B (AB010692) gene_id:K18I23.11~~unknown protein%3B E%3D3e-16 COG: XF1738%3B COG3202 ATP/ADP translocase%3B E%3D3e-47 PFAM: PF01681%3B C6 domain%3B E%3D0.37 gene gene3368 http://www.ncbi.nlm.nih.gov/gene/?term=RB5982 RB5983 RB5983 argB argB 3137623 3138486 + acetylglutamate kinase PMID: 10393305 best DB hits: BLAST: swissprot:P73326%3B ARGB_SYNY3 ACETYLGLUTAMATE KINASE (NAG KINASE)%3B E%3D3e-58 swissprot:O67848%3B ARGB_AQUAE ACETYLGLUTAMATE KINASE (NAG KINASE)%3B E%3D6e-58 swissprot:Q60382%3B ARGB_METJA PROBABLE ACETYLGLUTAMATE KINASE (NAG%3B E%3D2e-56 COG: slr1898%3B COG0548 Acetylglutamate kinase%3B E%3D3e-59 PFAM: PF00696%3B Amino acid kinase%3B E%3D2.1e-40 gene gene3369 http://www.ncbi.nlm.nih.gov/gene/?term=RB5983 RB5984 RB5984 RB5984 3138483 3140003 + acetylornithine aminotransferase PMID: 9002618 best DB hits: BLAST: swissprot:Q58131%3B ARGD_METJA ACETYLORNITHINE AMINOTRANSFERASE%3B E%3D2e-08 swissprot:O66442%3B ARGD_AQUAE ACETYLORNITHINE AMINOTRANSFERASE%3B E%3D5e-05 swissprot:O04866%3B ARGD_ALNGL ACETYLORNITHINE AMINOTRANSFERASE%2C%3B E%3D8e-04 COG: MJ0721%3B COG0160 PLP-dependent aminotransferases%3B E%3D2e-09 gene gene3370 http://www.ncbi.nlm.nih.gov/gene/?term=RB5984 RB5986 RB5986 argF argF 3140000 3140941 + ornithine carbamoyltransferase PMID: 3072022 PMID: 9275160 best DB hits: BLAST: ddbj:BAB06613.1%3B (AP001517) ornithine carbamoyltransferase%3B E%3D7e-72 swissprot:O93656%3B OTC_PYRAB ORNITHINE CARBAMOYLTRANSFERASE%3B E%3D2e-68 gb:AAD09004.1%3B (AF083209) ornithine carbamoyltransferase%3B E%3D4e-68 COG: BH2894%3B COG0078 Ornithine carbamoyltransferase%3B E%3D7e-73 PFAM: PF02703%3B Early E1A protein%3B E%3D0.31 PF02729%3B Aspartate/ornithine carbamoyltransf%3B E%3D7.3e-43 PF00185%3B Aspartate/ornithine carbamoyltransf%3B E%3D2.7e-48 gene gene3371 http://www.ncbi.nlm.nih.gov/gene/?term=RB5986 RB5988 RB5988 RB5988 3140970 3141494 - signal peptide gene gene3372 http://www.ncbi.nlm.nih.gov/gene/?term=RB5988 RB5989 RB5989 RB5989 3141554 3141715 - hypothetical protein gene gene3373 http://www.ncbi.nlm.nih.gov/gene/?term=RB5989 RB5990 RB5990 RB5990 3141577 3141918 - hypothetical protein gene gene3374 http://www.ncbi.nlm.nih.gov/gene/?term=RB5990 RB5991 RB5991 RB5991 3141889 3143013 + capsular polysaccharide biosynthesis protein best DB hits: BLAST: pir:G69146%3B capsular polysaccharide biosynthesis protein -%3B E%3D6e-16 swissprot:O05083%3B YG98_HAEIN GLYCOSYL TRANSFERASE HI1698%3B E%3D9e-16 embl:CAA72352.1%3B (Y11648) wlaC [Campylobacter jejuni]%3B E%3D5e-15 COG: MTH362%3B COG0438 Predicted glycosyltransferases%3B E%3D5e-17 PFAM: PF00534%3B Glycosyl transferases group 1%3B E%3D1.8e-36 gene gene3375 http://www.ncbi.nlm.nih.gov/gene/?term=RB5991 RB5992 RB5992 RB5992 3143036 3143278 + hypothetical protein gene gene3376 http://www.ncbi.nlm.nih.gov/gene/?term=RB5992 RB5993 RB5993 RB5993 3143179 3144207 + lipase PMID: 3419283 PMID: 2304552 PMID: 1404390 best DB hits: BLAST: pir:F82202%3B hypothetical protein VC1418 [imported] - Vibrio cholerae%3B E%3D5e-11 gb:AAF32408.1%3B (AF229435) lipase precursor [Rhizopus arrhizus]%3B E%3D6e-10 swissprot:P19515%3B LIP_RHIMI LIPASE PRECURSOR (TRIACYLGLYCEROL%3B E%3D7e-10 PFAM: PF01764%3B Lipase (class 3)%3B E%3D1.3e-23 gene gene3377 http://www.ncbi.nlm.nih.gov/gene/?term=RB5993 RB5995 RB5995 RB5995 3144218 3145246 + regulatory protein best DB hits: BLAST: pir:T35917%3B probable regulatory protein - Streptomyces coelicolor%3B E%3D4e-08 swissprot:Q51664%3B NORQ_PARDE NORQ PROTEIN ----- gb: AAA68972.1%3B E%3D3e-07 swissprot:Q51481%3B NIRQ_PSEAE DENITRIFICATION REGULATORY PROTEIN%3B E%3D2e-06 COG: PA0520%3B COG0714 MoxR-like ATPases%3B E%3D1e-07 gene gene3378 http://www.ncbi.nlm.nih.gov/gene/?term=RB5995 RB5996 RB5996 RB5996 3145288 3145458 - hypothetical protein gene gene3379 http://www.ncbi.nlm.nih.gov/gene/?term=RB5996 RB5998 RB5998 rpiB rpiB 3145505 3146023 + ribose-5-phosphate isomerase B catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate%3B enzyme from E. coli shows allose 6-phosphate isomerase activity gene gene3380 http://www.ncbi.nlm.nih.gov/gene/?term=RB5998 RB5999 RB5999 RB5999 3146080 3146982 - integrase/recombinase PMID: 8402918 PMID: 9311978 PMID: 9082984 best DB hits: BLAST: ddbj:BAB06184.1%3B (AP001515) integraserecombinase [Bacillus%3B E%3D3e-55 ddbj:BAB05248.1%3B (AP001512) integraserecombinase [Bacillus%3B E%3D9e-53 gb:AAC64162.1%3B (AF093548) tyrosine recombinase XerD%3B E%3D2e-49 COG: BH2465%3B COG0582 Integrase%3B E%3D2e-56 PFAM: PF02899%3B Phage integrase%2C N-terminal S%3B E%3D8.6e-26 PF00589%3B Phage integrase%3B E%3D3.9e-44 gene gene3381 http://www.ncbi.nlm.nih.gov/gene/?term=RB5999 RB60 RB60 RB60 25165 25359 + hypothetical protein gene gene34 http://www.ncbi.nlm.nih.gov/gene/?term=RB60 RB6002 RB6002 RB6002 3147011 3147349 - hypothetical protein gene gene3382 http://www.ncbi.nlm.nih.gov/gene/?term=RB6002 RB6003 RB6003 RB6003 3147328 3148674 - signal peptide gene gene3383 http://www.ncbi.nlm.nih.gov/gene/?term=RB6003 RB6005 RB6005 RB6005 3148678 3148950 - hypothetical protein gene gene3384 http://www.ncbi.nlm.nih.gov/gene/?term=RB6005 RB6007 RB6007 RB6007 3149031 3149564 - hypothetical protein gene gene3385 http://www.ncbi.nlm.nih.gov/gene/?term=RB6007 RB6009 RB6009 RB6009 3149573 3149941 - hypothetical protein gene gene3386 http://www.ncbi.nlm.nih.gov/gene/?term=RB6009 RB601 RB601 RB601 326287 327777 + ankyrin-related protein PMID: 7744957 PMID: 8108379 best DB hits: BLAST: pir:A57282%3B ankyrin-related protein unc-44 - Caenorhabditis elegans%3B E%3D1e-18 pir:T15347%3B ankyrin-related unc-44 - Caenorhabditis elegans -----%3B E%3D1e-18 pir:T15344%3B ankyrin-related unc-44 - Caenorhabditis elegans -----%3B E%3D1e-18 COG: slr1109%3B COG0666 Ankyrin repeat proteins%3B E%3D2e-12 PFAM: PF00023%3B Ank repeat%3B E%3D1.3e-08 gene gene337 http://www.ncbi.nlm.nih.gov/gene/?term=RB601 RB6010 RB6010 RB6010 3149911 3150072 + hypothetical protein gene gene3387 http://www.ncbi.nlm.nih.gov/gene/?term=RB6010 RB6011 RB6011 RB6011 3150083 3150235 - hypothetical protein gene gene3388 http://www.ncbi.nlm.nih.gov/gene/?term=RB6011 RB6012 RB6012 RB6012 3150246 3151547 - transposase PMID: 1662761 best DB hits: BLAST: gb:AAD45539.1%3B U70376_1 (U70376) InsA [Streptomyces netropsis]%3B E%3D5e-33 gb:AAG60893.1%3B AF322013_12 (AF322013) ID460 [Bradyrhizobium%3B E%3D8e-33 ddbj:BAA19966.1%3B (D63923) transposase [Acetobacter pasteurianus]%3B E%3D1e-26 gene gene3389 http://www.ncbi.nlm.nih.gov/gene/?term=RB6012 RB6013 RB6013 RB6013 3151570 3152304 - hypothetical protein gene gene3390 http://www.ncbi.nlm.nih.gov/gene/?term=RB6013 RB6014 RB6014 RB6014 3152367 3152807 + signal peptide gene gene3391 http://www.ncbi.nlm.nih.gov/gene/?term=RB6014 RB6016 RB6016 RB6016 3152860 3153426 + hypothetical protein gene gene3392 http://www.ncbi.nlm.nih.gov/gene/?term=RB6016 RB6018 RB6018 RB6018 3153562 3154134 - hypothetical protein gene gene3393 http://www.ncbi.nlm.nih.gov/gene/?term=RB6018 RB6019 RB6019 RB6019 3154198 3154683 - hypothetical protein gene gene3394 http://www.ncbi.nlm.nih.gov/gene/?term=RB6019 RB6021 RB6021 RB6021 3154768 3155358 - hypothetical protein best DB hits: BLAST: gb:AAB64177.1%3B (AF012345) beta-amylase [Hordeum vulgare]%3B E%3D0.71 gene gene3395 http://www.ncbi.nlm.nih.gov/gene/?term=RB6021 RB6025 RB6025 RB6025 3155504 3158788 - hypothetical protein best DB hits: PFAM: PF00404%3B Dockerin type I repeat%3B E%3D0.21 PF00160%3B Cyclophilin type peptidyl-proly%3B E%3D0.12 gene gene3396 http://www.ncbi.nlm.nih.gov/gene/?term=RB6025 RB6030 RB6030 RB6030 3158845 3159012 - hypothetical protein gene gene3397 http://www.ncbi.nlm.nih.gov/gene/?term=RB6030 RB6031 RB6031 RB6031 3158984 3160462 - hypothetical protein gene gene3398 http://www.ncbi.nlm.nih.gov/gene/?term=RB6031 RB6033 RB6033 RB6033 3160459 3162768 - serine/threonine protein kinase PMID: 7768349 best DB hits: BLAST: pir:H69878%3B probable protein kinase (EC 2.7.1.-) yloP - Bacillus%3B E%3D2e-41 ddbj:BAB06223.1%3B (AP001515) serinethreonine protein kinase%3B E%3D9e-39 swissprot:P54744%3B PKNB_MYCLE SERINETHREONINE-PROTEIN%3B E%3D8e-36 COG: BS_yloP_1%3B COG0515 Serine/threonine protein kinases%3B E%3D2e-42 PFAM: PF00069%3B Protein kinase domain%3B E%3D3.3e-46 PF00515%3B TPR Domain%3B E%3D0.1 gene gene3399 http://www.ncbi.nlm.nih.gov/gene/?term=RB6033 RB6034 RB6034 RB6034 3162765 3163394 - RNA polymerase sigma-E factor PMID: 7751307 best DB hits: BLAST: swissprot:P44790%3B RPOE_HAEIN RNA POLYMERASE SIGMA-E FACTOR%3B E%3D1e-11 gb:AAK03873.1%3B (AE006215) RpoE [Pasteurella multocida]%3B E%3D3e-11 pir:C82583%3B RNA polymerase sigma-H factor XF2239 [imported] -%3B E%3D4e-10 COG: HI0628%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D1e-12 PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D0.0021 gene gene3400 http://www.ncbi.nlm.nih.gov/gene/?term=RB6034 RB6037 RB6037 RB6037 3163372 3163548 - hypothetical protein gene gene3401 http://www.ncbi.nlm.nih.gov/gene/?term=RB6037 RB6038 RB6038 RB6038 3163457 3163678 - hypothetical protein gene gene3402 http://www.ncbi.nlm.nih.gov/gene/?term=RB6038 RB6040 RB6040 RB6040 3163887 3164828 - hemolysin protein best DB hits: BLAST: pir:G82309%3B probable hemolysin VC0558 [imported] - Vibrio cholerae%3B E%3D4e-10 gb:AAG20419.1%3B (AE005114) hemolysin protein%3B Hlp [Halobacterium%3B E%3D6e-09 ddbj:BAA16497.1%3B (D90888) similar to [SwissProt Accession Number%3B E%3D9e-09 COG: VC0558%3B COG1253 Uncharacterized CBS domain-containing proteins%3B E%3D4e-11 PFAM: PF01595%3B Domain of unknown function DUF21%3B E%3D1.8e-17 gene gene3404 http://www.ncbi.nlm.nih.gov/gene/?term=RB6040 RB6042 RB6042 RB6042 3164825 3166072 - hemolysin protein best DB hits: BLAST: pir:G82309%3B probable hemolysin VC0558 [imported] - Vibrio cholerae%3B E%3D6e-19 gb:AAG20419.1%3B (AE005114) hemolysin protein%3B Hlp [Halobacterium%3B E%3D1e-16 ddbj:BAA16497.1%3B (D90888) similar to [SwissProt Accession Number%3B E%3D4e-16 COG: VC0558%3B COG1253 Uncharacterized CBS domain-containing proteins%3B E%3D6e-20 PFAM: PF01595%3B Domain of unknown function DUF2%3B E%3D0.00013 PF00571%3B CBS domain%3B E%3D0.0037 gene gene3405 http://www.ncbi.nlm.nih.gov/gene/?term=RB6042 RB6045 RB6045 RB6045 3166069 3167952 - hypothetical protein gene gene3406 http://www.ncbi.nlm.nih.gov/gene/?term=RB6045 RB6049 RB6049 cysC cysC 3168042 3168851 - adenylyl-sulfate kinase PMID: 2828368 PMID: 1316900 best DB hits: BLAST: gb:AAG42463.1%3B AF308468_4 (AF308468) APS kinase [Klebsiella%3B E%3D2e-48 swissprot:P23846%3B CYSC_ECOLI ADENYLYLSULFATE KINASE (APS KINASE)%3B E%3D7e-47 pir:JN0328%3B adenylylsulfate kinase (EC 2.7.1.25) precursor -%3B E%3D3e-46 COG: cysC%3B COG0529 Adenylylsulfate kinase and related kinases%3B E%3D6e-48 PFAM: PF01121%3B Uncharacterized protein famil%3B E%3D0.34 PF00005%3B ABC transporter%3B E%3D0.021 PF00910%3B RNA helicase%3B E%3D0.052 gene gene3407 http://www.ncbi.nlm.nih.gov/gene/?term=RB6049 RB605 RB605 RB605 327902 329341 + arylsulfatase PMID: 2598936 best DB hits: BLAST: embl:CAA34667.1%3B (X16679) arylsulfatase [Hemicentrotus%3B E%3D1e-33 pir:S07089%3B arylsulfatase (EC 3.1.6.1) - sea urchin (Lytechinus%3B E%3D2e-33 gb:AAF63858.1%3B (AF112242) N-acetylgalactosamine-6-sulfate%3B E%3D2e-33 COG: ydeN%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D4e-23 yejM%3B COG3083 Predicted hydrolase of alkaline phosphatase%3B E%3D0.006 Rv0663%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D0.008 PFAM: PF00884%3B Sulfatase%3B E%3D5.6e-40 gene gene338 http://www.ncbi.nlm.nih.gov/gene/?term=RB605 RB6051 RB6051 RB6051 3168891 3170468 - hypothetical protein gene gene3408 http://www.ncbi.nlm.nih.gov/gene/?term=RB6051 RB6053 RB6053 RB6053 3170500 3171969 - sulfatase PMID: 12024217 best DB hits: PFAM: PF00884%3B Sulfatase%3B E%3D0.34 gene gene3409 http://www.ncbi.nlm.nih.gov/gene/?term=RB6053 RB6054 RB6054 RB6054 3171912 3175166 - hypothetical protein gene gene3410 http://www.ncbi.nlm.nih.gov/gene/?term=RB6054 RB6056 RB6056 moxR moxR 3175256 3176359 - MoxR protein PMID: 8997703 best DB hits: BLAST: pir:H70121%3B methanol dehydrogenase regulator (moxR) homolog - Lyme%3B E%3D3e-71 embl:CAA65298.1%3B (X96434) moxR [Borrelia burgdorferi] -----%3B E%3D9e-69 ddbj:BAB04450.1%3B (AP001509) BH0731~~unknown conserved protein%3B E%3D3e-67 COG: BB0176%3B COG0714 MoxR-like ATPases%3B E%3D3e-72 PFAM: PF00004%3B ATPase associated with va%3B E%3D0.0005 PF01078%3B Magnesium chelatase%2C subunit Chl%3B E%3D1e-12 gene gene3411 http://www.ncbi.nlm.nih.gov/gene/?term=RB6056 RB6057 RB6057 RB6057 3176103 3178871 + hypothetical protein best DB hits: PFAM: PF00432%3B Prenyltransferase and squalene ox%3B E%3D0.69 gene gene3412 http://www.ncbi.nlm.nih.gov/gene/?term=RB6057 RB6061 RB6061 pmm pmm 3178888 3180738 - phosphomannomutase PMID: 8083177 best DB hits: BLAST: gb:AAD56627.1%3B AF165218_2 (AF165218) Pgm [Streptococcus%3B E%3D2e-83 ddbj:BAB04825.1%3B (AP001510) phosphomannomutase [Bacillus%3B E%3D5e-79 swissprot:P18159%3B YHXB_BACSU PROBABLE PHOSPHOMANNOMUTASE (PMM)%3B E%3D1e-77 COG: BH1106%3B COG1109 Phosphomannomutase%3B E%3D5e-80 VC2095%3B COG0033 Phosphoglucomutase%3B E%3D3e-11 PH0923%3B COG1109 Phosphomannomutase%3B E%3D5e-11 PFAM: PF02878%3B Phosphoglucomutase/phosphomannomu%3B E%3D1.6e-13 PF02880%3B Phosphoglucomutase/phosphomannomu%3B E%3D0.023 PF00408%3B Phosphoglucomutase/phosphomannomu%3B E%3D0.76 gene gene3413 http://www.ncbi.nlm.nih.gov/gene/?term=RB6061 RB6062 RB6062 RB6062 3180701 3180874 + hypothetical protein gene gene3414 http://www.ncbi.nlm.nih.gov/gene/?term=RB6062 RB6063 RB6063 corA corA 3180908 3182005 - magnesium/cobalt transport protein PMID: 8314774 best DB hits: BLAST: pir:S77053%3B magnesiumcobalt transport protein sll0671 -%3B E%3D7e-61 pir:S75981%3B magnesiumcobalt transport protein sll0507 -%3B E%3D2e-52 pir:H72360%3B divalent cation transport-related protein - Thermotoga%3B E%3D3e-51 COG: sll0671%3B COG0598 Mg2+ and Co2+ transporters%3B E%3D7e-62 PFAM: PF01544%3B CorA-like Mg2+ transporter protein%3B E%3D1.9e-79 gene gene3415 http://www.ncbi.nlm.nih.gov/gene/?term=RB6063 RB6065 RB6065 smc smc 3182052 3185756 - chromosome partition protein Smc PMID: 9573042 best DB hits: BLAST: ddbj:BAB06206.1%3B (AP001515) chromosome segregation SMC protein%3B E%3D1e-119 swissprot:P51834%3B SMC_BACSU CHROMOSOME PARTITION PROTEIN SMC -----%3B E%3D1e-106 pir:JC4819%3B minichromosome stabilizing protein SMC - Bacillus subtilis%3B E%3D1e-104 COG: BH2487%3B COG1196 Chromosome segregation ATPases%3B E%3D1e-120 PFAM: PF00005%3B ABC transporter%3B E%3D0.038 PF02463%3B SMC domain N terminal domain%3B E%3D5.4e-79 PF02371%3B Transposase IS116/IS110/IS902%3B E%3D0.65 gene gene3416 http://www.ncbi.nlm.nih.gov/gene/?term=RB6065 RB6067 RB6067 RB6067 3185766 3186659 - hypothetical protein gene gene3417 http://www.ncbi.nlm.nih.gov/gene/?term=RB6067 RB607 RB607 RB607 329397 331193 + arylsulfatase PMID: 99269066 best DB hits: BLAST: gb:AAF71375.1%3B AF262989_2 (AF262989) arylsulfatase [Klebsiella%3B E%3D3e-30 ddbj:BAA04535.1%3B (D17629) N-acetylgalactosamine 6-sulfate%3B E%3D4e-30 gb:AAF71377.1%3B AF262990_2 (AF262990) arylsulfatase [Klebsiella%3B E%3D5e-30 COG: PA0183%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D1e-26 VC2041%3B COG3083 Predicted hydrolase of alkaline phosphatase%3B E%3D2e-04 VNG0061C%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D0.002 PFAM: PF00884%3B Sulfatase%3B E%3D1.3e-38 gene gene339 http://www.ncbi.nlm.nih.gov/gene/?term=RB607 RB6070 RB6070 RB6070 3186811 3187416 + restriction endonuclease PMID: 9358175 best DB hits: BLAST: pir:S74697%3B hypothetical protein sll1193 - Synechocystis sp. (strain%3B E%3D3e-23 pir:T36856%3B hypothetical protein SCI5.03 - Streptomyces coelicolor%3B E%3D4e-17 pir:H82621%3B hypothetical protein XF1912 [imported] - Xylella%3B E%3D5e-17 COG: sll1193%3B COG1403 Restriction endonuclease%3B E%3D3e-24 PFAM: PF01844%3B HNH endonuclease%3B E%3D9.6e-11 gene gene3418 http://www.ncbi.nlm.nih.gov/gene/?term=RB6070 RB6071 RB6071 RB6071 3187463 3188104 + hypothetical protein gene gene3419 http://www.ncbi.nlm.nih.gov/gene/?term=RB6071 RB6073 RB6073 RB6073 3188416 3188607 - hypothetical protein gene gene3421 http://www.ncbi.nlm.nih.gov/gene/?term=RB6073 RB6075 RB6075 RB6075 3188548 3190110 + secreted protein PMID: 8843436 best DB hits: BLAST: ddbj:BAB06714.1%3B (AP001517) BH2995~~unknown conserved protein%3B E%3D2e-95 embl:CAB71916.1%3B (AL138668) secreted protein.%3B E%3D2e-90 embl:CAB71258.1%3B (AL138598) secreted protein.%3B E%3D1e-79 PFAM: PF02871%3B NAD/NADP octopine/nopaline dehy%3B E%3D0.52 PF00070%3B Pyridine nucleotide-disulphide%3B E%3D0.0043 PF02254%3B KTN NAD-binding domain%3B E%3D0.011 gene gene3422 http://www.ncbi.nlm.nih.gov/gene/?term=RB6075 RB6078 RB6078 RB6078 3190235 3190855 + RNA polymerase sigma factor SigZ Member of the extracytoplasmic function sigma factors which are active under specific conditions%3B binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription gene gene3423 http://www.ncbi.nlm.nih.gov/gene/?term=RB6078 RB6081 RB6081 RB6081 3190877 3191035 - hypothetical protein gene gene3424 http://www.ncbi.nlm.nih.gov/gene/?term=RB6081 RB6084 RB6084 RB6084 3191045 3191533 - hypothetical protein gene gene3425 http://www.ncbi.nlm.nih.gov/gene/?term=RB6084 RB6087 RB6087 RB6087 3191537 3191911 + response regulator PMID: 11474104 best DB hits: BLAST: gb:AAD28577.1%3B AF121341_1 (AF121341) response regulator%3B E%3D0.038 pir:F82618%3B chemotaxis-related protein kinase XF1952 [imported] -%3B E%3D0.10 pir:S76044%3B hypothetical protein slr0322 - Synechocystis sp. (strain%3B E%3D0.10 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D3.5e-05 gene gene3426 http://www.ncbi.nlm.nih.gov/gene/?term=RB6087 RB609 RB609 RB609 331232 333445 - xylan esterase PMID: 9384377 best DB hits: BLAST: pir:B69988%3B hypothetical protein ytaP - Bacillus subtilis -----%3B E%3D2e-08 gb:AAB68821.1%3B (AF001926) xylan esterase 1 [Thermoanaerobacterium%3B E%3D0.001 pir:G82643%3B conserved hypothetical protein XF1745 [imported] -%3B E%3D0.003 COG: XF1745%3B COG1073 Hydrolases of the alpha/beta superfamily%3B E%3D3e-04 PFAM: PF01738%3B Dienelactone hydrolase%3B E%3D0.53 gene gene340 http://www.ncbi.nlm.nih.gov/gene/?term=RB609 RB6090 RB6090 panD panD 3191913 3192383 + aspartate alpha-decarboxylase Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) gene gene3427 http://www.ncbi.nlm.nih.gov/gene/?term=RB6090 RB6092 RB6092 RB6092 3192387 3193472 + hypothetical protein PMID: 11214968 best DB hits: BLAST: pir:C82445%3B hypothetical protein VCA0550 [imported] - Vibrio%3B E%3D0.16 gene gene3428 http://www.ncbi.nlm.nih.gov/gene/?term=RB6092 RB6095 RB6095 RB6095 3193586 3195553 + hypothetical protein PMID: 10484179 best DB hits: BLAST: ddbj:BAB04212.1%3B (AP001508) BH0493~~unknown [Bacillus halodurans]%3B E%3D4e-12 gb:AAF77061.1%3B AF266466_3 (AF266466) hexuronic acid%3B E%3D0.003 gb:AAK05726.1%3B AE006393_5 (AE006393) glucuronate isomerase (EC%3B E%3D0.57 gene gene3429 http://www.ncbi.nlm.nih.gov/gene/?term=RB6095 RB6097 RB6097 RB6097 3195567 3195869 + hypothetical protein gene gene3430 http://www.ncbi.nlm.nih.gov/gene/?term=RB6097 RB6098 RB6098 RB6098 3195620 3195847 + hypothetical protein gene gene3431 http://www.ncbi.nlm.nih.gov/gene/?term=RB6098 RB61 RB61 RB61 25378 25554 + hypothetical protein gene gene35 http://www.ncbi.nlm.nih.gov/gene/?term=RB61 RB6100 RB6100 RB6100 3195902 3198724 + hypothetical protein best DB hits: PFAM: PF02368%3B Bacterial Ig-like domain (group%3B E%3D0.091 gene gene3432 http://www.ncbi.nlm.nih.gov/gene/?term=RB6100 RB6101 RB6101 RB6101 3198799 3200118 + hypothetical protein PMID: 11823852 gene gene3433 http://www.ncbi.nlm.nih.gov/gene/?term=RB6101 RB6102 RB6102 RB6102 3200237 3200968 - signal peptide gene gene3434 http://www.ncbi.nlm.nih.gov/gene/?term=RB6102 RB6104 RB6104 RB6104 3201184 3202683 - hypothetical protein gene gene3435 http://www.ncbi.nlm.nih.gov/gene/?term=RB6104 RB6106 RB6106 RB6106 3202741 3202908 + hypothetical protein gene gene3436 http://www.ncbi.nlm.nih.gov/gene/?term=RB6106 RB6107 RB6107 RB6107 3202928 3205048 - hypothetical protein PMID: 10710307 best DB hits: BLAST: pir:B81207%3B hypothetical protein NMB0372 [imported] - Neisseria%3B E%3D0.016 pir:A81174%3B hypothetical protein NMB0655 [imported] - Neisseria%3B E%3D0.022 pir:B81783%3B hypothetical protein NMA2115 [imported] - Neisseria%3B E%3D0.070 gene gene3437 http://www.ncbi.nlm.nih.gov/gene/?term=RB6107 RB6108 RB6108 RB6108 3204895 3208185 - signal peptide best DB hits: PFAM: PF00515%3B TPR Domain%3B E%3D0.036 gene gene3438 http://www.ncbi.nlm.nih.gov/gene/?term=RB6108 RB6112 RB6112 RB6112 3208246 3208854 - hypothetical protein gene gene3439 http://www.ncbi.nlm.nih.gov/gene/?term=RB6112 RB6114 RB6114 murE murE 3208897 3210969 + UDP-N-acetylmuramoylalanyl-D-glutamate-2%2C6-diaminopimelate ligase PMID: 8436954 best DB hits: BLAST: swissprot:Q03523%3B MURE_BACSU%3B E%3D2e-10 ddbj:BAB06290.1%3B (AP001515)%3B E%3D4e-09 swissprot:O86491%3B MURE_STAAU%3B E%3D7e-09 COG: BS_murE%3B COG0769 UDP-N-acetylmuramyl tripeptide synthase%3B E%3D2e-11 XF0794%3B COG0770 UDP-N-acetylmuramyl pentapeptide synthase%3B E%3D1e-09 CPn0418%3B COG0769 UDP-N-acetylmuramyl tripeptide synthase%3B E%3D2e-06 PFAM: PF01225%3B Mur ligase%2C catalytic domai%3B E%3D0.0033 PF00023%3B Ank repeat%3B E%3D0.019 gene gene3440 http://www.ncbi.nlm.nih.gov/gene/?term=RB6114 RB6119 RB6119 RB6119 3210993 3211385 + hypothetical protein gene gene3441 http://www.ncbi.nlm.nih.gov/gene/?term=RB6119 RB612 RB612 RB612 333482 333649 + hypothetical protein gene gene341 http://www.ncbi.nlm.nih.gov/gene/?term=RB612 RB6120 RB6120 tolB tolB 3211382 3214606 + TolB protein PMID: 8955385 best DB hits: BLAST: embl:CAB60199.1%3B (AJ250881) P1a6 protein [Haemonchus contortus]%3B E%3D5e-29 gb:AAB01192.1%3B (U55864) apical gut membrane polyprotein%3B E%3D8e-29 pir:T19607%3B hypothetical protein C31C9.1 - Caenorhabditis elegans%3B E%3D8e-27 COG: XF0820%3B COG2234 Predicted aminopeptidases%3B E%3D2e-11 RP302%3B COG0823 Periplasmic component of the Tol biopolymer transport%3B E%3D1e-07 PA0972%3B COG0823 Periplasmic component of the Tol biopolymer%3B E%3D2e-06 PFAM: PF02787%3B Carbamoyl-phosphate synthetase%3B E%3D0.2 PF01546%3B Peptidase M20/M25/M40%3B E%3D0.61 PF00595%3B PDZ domain (Also known as DHR o%3B E%3D0.017 gene gene3442 http://www.ncbi.nlm.nih.gov/gene/?term=RB6120 RB6122 RB6122 RB6122 3214603 3215520 + hypothetical protein gene gene3443 http://www.ncbi.nlm.nih.gov/gene/?term=RB6122 RB6123 RB6123 RB6123 3215597 3217891 + protein disulfide-isomerase PMID: 8760355 best DB hits: BLAST: pir:T34092%3B hypothetical protein C07A12.4 - Caenorhabditis elegans%3B E%3D0.071 pir:S71862%3B protein disulfide-isomerase (EC 5.3.4.1) precursor -%3B E%3D0.071 swissprot:P09103%3B PDI_MOUSE PROTEIN DISULFIDE ISOMERASE PRECURSOR%3B E%3D0.079 gene gene3444 http://www.ncbi.nlm.nih.gov/gene/?term=RB6123 RB6126 RB6126 ribD ribD 3217792 3219075 + riboflavin bifunctional biosynthesis protein RibG PMID: 9068650 best DB hits: BLAST: pir:T50546%3B riboflavin bifunctional biosynthesis protein ribG%3B E%3D2e-56 swissprot:P50853%3B RIBD_ACTPL RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBD%3B E%3D2e-56 ddbj:BAB05273.1%3B (AP001512) riboflavin specific%3B E%3D9e-52 COG: ribD_1%3B COG0117 Pyrimidine deaminase%3B E%3D1e-28 BH1554_2%3B COG1985 Pyrimidine reductase%2C riboflavin biosynthesis%3B E%3D6e-21 CPn0871_1%3B COG0117 Pyrimidine deaminase%3B E%3D1e-20 PFAM: PF00383%3B Cytidine and deoxycytidylate de%3B E%3D1.5e-31 PF01872%3B RibD C-terminal domain%3B E%3D4e-33 gene gene3445 http://www.ncbi.nlm.nih.gov/gene/?term=RB6126 RB6127 RB6127 RB6127 3219093 3223592 - signal peptide best DB hits: PFAM: PF01842%3B ACT domain%3B E%3D0.55 PF00515%3B TPR Domain%3B E%3D0.051 gene gene3446 http://www.ncbi.nlm.nih.gov/gene/?term=RB6127 RB6131 RB6131 RB6131 3223482 3223790 + hypothetical protein gene gene3447 http://www.ncbi.nlm.nih.gov/gene/?term=RB6131 RB6132 RB6132 RB6132 3223715 3223891 - hypothetical protein gene gene3448 http://www.ncbi.nlm.nih.gov/gene/?term=RB6132 RB6133 RB6133 purK purK 3224012 3225232 - 5-(carboxyamino)imidazole ribonucleotide synthase PMID: 3036807 best DB hits: BLAST: swissprot:P12045%3B PURK_BACSU PHOSPHORIBOSYLAMINOIMIDAZOLE%3B E%3D2e-59 embl:CAB45017.1%3B (AJ242839) phosphoribosylaminoimidazole%3B E%3D2e-58 ddbj:BAB04343.1%3B (AP001509) phosphoribosylaminoimidazole%3B E%3D2e-58 COG: BS_purK%3B COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR%3B E%3D2e-60 MJ1486%3B COG0027 Formate-dependent phosphoribosylglycinamide%3B E%3D1e-31 purK%3B COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR%3B E%3D2e-29 PFAM: PF02786%3B Carbamoyl-phosphate synthase%3B E%3D0.027 PF02222%3B ATP-grasp domain%3B E%3D3.7e-22 PF01820%3B D-ala D-ala ligase%3B E%3D0.65 gene gene3449 http://www.ncbi.nlm.nih.gov/gene/?term=RB6133 RB6135 RB6135 purE purE 3225229 3225747 - 5-(carboxyamino)imidazole ribonucleotide mutase PMID: 3036807 best DB hits: BLAST: swissprot:P12044%3B PUR6_BACSU PHOSPHORIBOSYLAMINOIMIDAZOLE%3B E%3D7e-47 ddbj:BAB04342.1%3B (AP001509) phosphoribosylaminoimidazole%3B E%3D9e-45 swissprot:O06456%3B PUR6_SULSO PHOSPHORIBOSYLAMINOIMIDAZOLE%3B E%3D9e-43 COG: BS_purE%3B COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase%3B E%3D7e-48 YOR128c_2%3B COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR)%3B E%3D7e-39 VC0052%3B COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase%3B E%3D1e-38 PFAM: PF00731%3B AIR carboxylase%3B E%3D1.7e-82 gene gene3450 http://www.ncbi.nlm.nih.gov/gene/?term=RB6135 RB6137 RB6137 RB6137 3225751 3226056 - hypothetical protein gene gene3451 http://www.ncbi.nlm.nih.gov/gene/?term=RB6137 RB6139 RB6139 RB6139 3226050 3226613 + hypothetical protein PMID: 10484179 best DB hits: BLAST: ddbj:BAB05607.1%3B (AP001513) BH1888~~unknown conserved protein%3B E%3D4e-06 swissprot:P54564%3B YQKA_BACSU HYPOTHETICAL 39.0 KD PROTEIN IN%3B E%3D9e-06 pir:C83045%3B hypothetical protein PA4798 [imported] - Pseudomonas%3B E%3D2e-04 COG: BH1888%3B COG2320 Uncharacterized BCR%3B E%3D4e-07 gene gene3452 http://www.ncbi.nlm.nih.gov/gene/?term=RB6139 RB614 RB614 RB614 333675 334874 + quinohemoprotein ethanol dehydrogenase PMID: 7601151 PMID: 8654419 best DB hits: BLAST: pir:S52317%3B quinohemoprotein ethanol dehydrogenase (EC 1.1.99.-)%3B E%3D0.006 gb:AAF86335.1%3B (AF277373) terahydrofurfuryl alcohol dehydrogenase%3B E%3D0.36 pir:A82284%3B conserved hypothetical protein VC0762 [imported] -%3B E%3D0.76 PFAM: PF01011%3B PQQ enzyme repeat%3B E%3D0.29 gene gene342 http://www.ncbi.nlm.nih.gov/gene/?term=RB614 RB6141 RB6141 RB6141 3226679 3227080 + hypothetical protein gene gene3453 http://www.ncbi.nlm.nih.gov/gene/?term=RB6141 RB6142 RB6142 tas tas 3227094 3228131 - aldo/keto reductase oxidoreductase TAS PMID: 10984043 best DB hits: BLAST: pir:B83093%3B probable oxidoreductase PA4434 [imported] - Pseudomonas%3B E%3D4e-54 pir:C82294%3B oxidoreductase Tas%2C aldoketo reductase VC0667%3B E%3D2e-53 gb:AAG57946.1%3B AE005512_5 (AE005512) orf%2C hypothetical protein%3B E%3D3e-51 COG: PA4434%3B COG0667 Predicted oxidoreductases (related to aryl-alcohol%3B E%3D4e-55 PFAM: PF00248%3B Aldo/keto reductase%3B E%3D2.5e-29 gene gene3454 http://www.ncbi.nlm.nih.gov/gene/?term=RB6142 RB6144 RB6144 RB6144 3228189 3228305 - hypothetical protein gene gene3455 http://www.ncbi.nlm.nih.gov/gene/?term=RB6144 RB6145 RB6145 RB6145 3228326 3229294 + hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:B83340%3B hypothetical protein PA2451 [imported] - Pseudomonas%3B E%3D9e-10 pir:A75265%3B ferric enterobactin esterase-related protein -%3B E%3D4e-05 swissprot:P10478%3B XYNZ_CLOTM ENDO-1%2C4-BETA-XYLANASE Z PRECURSOR%3B E%3D0.004 COG: PA2451%3B COG2382 Enterochelin esterase and related enzymes%3B E%3D9e-11 gene gene3456 http://www.ncbi.nlm.nih.gov/gene/?term=RB6145 RB6147 RB6147 aroB aroB 3229258 3230442 + 3-dehydroquinate synthase catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate%3B functions in aromatic amino acid biosynthesis gene gene3457 http://www.ncbi.nlm.nih.gov/gene/?term=RB6147 RB6148 RB6148 RB6148 3230464 3231369 + hypothetical protein best DB hits: BLAST: gb:AAB51777.1%3B (U69571) ORF993%3B upstream of trxA gene%3B E%3D0.81 gene gene3458 http://www.ncbi.nlm.nih.gov/gene/?term=RB6148 RB6150 RB6150 RB6150 3231428 3231595 + hypothetical protein gene gene3459 http://www.ncbi.nlm.nih.gov/gene/?term=RB6150 RB6151 RB6151 RB6151 3231606 3232352 - hypothetical protein PMID: 10978523 gene gene3460 http://www.ncbi.nlm.nih.gov/gene/?term=RB6151 RB6154 RB6154 RB6154 3232418 3232576 - hypothetical protein gene gene3461 http://www.ncbi.nlm.nih.gov/gene/?term=RB6154 RB6155 RB6155 RB6155 3232485 3232658 - hypothetical protein gene gene3462 http://www.ncbi.nlm.nih.gov/gene/?term=RB6155 RB6156 RB6156 RB6156 3232622 3233026 - hypothetical protein gene gene3463 http://www.ncbi.nlm.nih.gov/gene/?term=RB6156 RB6158 RB6158 RB6158 3233104 3233532 - hypothetical protein gene gene3464 http://www.ncbi.nlm.nih.gov/gene/?term=RB6158 RB6160 RB6160 RB6160 3233585 3233743 + hypothetical protein gene gene3465 http://www.ncbi.nlm.nih.gov/gene/?term=RB6160 RB6162 RB6162 RB6162 3233881 3234375 - hypothetical protein gene gene3466 http://www.ncbi.nlm.nih.gov/gene/?term=RB6162 RB6163 RB6163 RB6163 3234329 3234799 + hypothetical protein gene gene3467 http://www.ncbi.nlm.nih.gov/gene/?term=RB6163 RB6166 RB6166 RB6166 3235092 3235940 + integrase/recombinase PMID: 9163424 best DB hits: BLAST: swissprot:P55632%3B Y4QK_RHISN INTEGRASERECOMBINASE Y4QK%3B E%3D7e-25 swissprot:P55429%3B Y4EF_RHISN INTEGRASERECOMBINASE Y4EF%3B E%3D5e-24 prf:2115270D%3B integrase [Weeksella zoohelcum]%3B E%3D4e-18 COG: PAB0255%3B COG0582 Integrase%3B E%3D1e-15 PFAM: PF00589%3B Phage integrase%3B E%3D2.6e-19 gene gene3468 http://www.ncbi.nlm.nih.gov/gene/?term=RB6166 RB6167 RB6167 RB6167 3235937 3237064 + transposase PMID: 9163424 best DB hits: BLAST: swissprot:P55631%3B Y4QJ_RHISN TRANSPOSASE Y4QJ -----%3B E%3D7e-39 prf:2115270C%3B transposase [Weeksella zoohelcum]%3B E%3D6e-35 pir:S23782%3B transposase tnpA (insertion sequence IS91) - Escherichia%3B E%3D5e-14 gene gene3469 http://www.ncbi.nlm.nih.gov/gene/?term=RB6167 RB6168 RB6168 RB6168 3236689 3237315 + hypothetical protein gene gene3470 http://www.ncbi.nlm.nih.gov/gene/?term=RB6168 RB617 RB617 RB617 335196 338141 + hypothetical protein PMID: 2110981 best DB hits: BLAST: swissprot:Q00808%3B HET1_PODAN VEGETATIBLE INCOMPATIBILITY PROTEIN%3B E%3D1e-17 gb:AAG40737.1%3B AF299085_1 (AF299085) Bap1 [Myxococcus xanthus]%3B E%3D3e-12 embl:CAB45034.1%3B (AL078635) WD-repeat containing protein%3B E%3D3e-12 COG: sll1491%3B COG2319 WD40 repeat protein%3B E%3D2e-06 PFAM: PF00400%3B WD domain%2C G-beta repeat%3B E%3D0.017 gene gene343 http://www.ncbi.nlm.nih.gov/gene/?term=RB617 RB6170 RB6170 RB6170 3237422 3237976 - hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:F83333%3B hypothetical protein PA2504 [imported] - Pseudomonas%3B E%3D8e-11 pir:C81172%3B hypothetical protein NMB0685 [imported] - Neisseria%3B E%3D1e-10 pir:B81935%3B hypothetical protein NMA0887 [imported] - Neisseria%3B E%3D3e-10 gene gene3471 http://www.ncbi.nlm.nih.gov/gene/?term=RB6170 RB6171 RB6171 RB6171 3238048 3239091 - integrase/recombinase PMID: 9163424 best DB hits: BLAST: swissprot:P55632%3B Y4QK_RHISN INTEGRASERECOMBINASE Y4QK%3B E%3D3e-35 prf:2115270D%3B integrase [Weeksella zoohelcum]%3B E%3D1e-34 swissprot:P55429%3B Y4EF_RHISN INTEGRASERECOMBINASE Y4EF%3B E%3D1e-33 COG: MTH893%3B COG0582 Integrase%3B E%3D9e-29 PFAM: PF00589%3B Phage integrase%3B E%3D4.2e-40 gene gene3472 http://www.ncbi.nlm.nih.gov/gene/?term=RB6171 RB6172 RB6172 RB6172 3239311 3239520 - hypothetical protein gene gene3473 http://www.ncbi.nlm.nih.gov/gene/?term=RB6172 RB6174 RB6174 RB6174 3239525 3239734 - hypothetical protein gene gene3474 http://www.ncbi.nlm.nih.gov/gene/?term=RB6174 RB6175 RB6175 RB6175 3239748 3240125 - hypothetical protein gene gene3475 http://www.ncbi.nlm.nih.gov/gene/?term=RB6175 RB6178 RB6178 RB6178 3240162 3240287 + hypothetical protein gene gene3476 http://www.ncbi.nlm.nih.gov/gene/?term=RB6178 RB6180 RB6180 RB6180 3240284 3240586 + component of Sec-independent protein secretion pathway PMID: 12093901 best DB hits: BLAST: gb:AAG19264.1%3B (AE005022) Vng0801c [Halobacterium sp. NRC-1]%3B E%3D0.001 embl:CAC22924.1%3B (AL512963) hypothetical [Sulfolobus%3B E%3D0.005 gb:AAB89210.1%3B (AE000961) conserved hypothetical protein%3B E%3D0.006 COG: APE2154a%3B COG1826 Sec-independent protein secretion pathway%3B E%3D4e-05 PFAM: PF02416%3B mttA/Hcf106 family%3B E%3D6.2e-10 gene gene3477 http://www.ncbi.nlm.nih.gov/gene/?term=RB6180 RB6184 RB6184 RB6184 3240588 3240863 + hypothetical protein best DB hits: BLAST: gb:AAD31522.1%3B AF145755_1 (AF145755) THA4 [Zea mays]%3B E%3D0.46 PFAM: PF02416%3B mttA/Hcf106 family%3B E%3D1.6e-06 gene gene3478 http://www.ncbi.nlm.nih.gov/gene/?term=RB6184 RB6185 RB6185 RB6185 3240869 3244093 - L-sorbosone dehydrogenase PMID: 10567266 best DB hits: BLAST: pir:F75417%3B L-sorbosone dehydrogenase - Deinococcus radiodurans%3B E%3D0.19 pir:C75617%3B probable oxidoreductase - Deinococcus radiodurans%3B E%3D0.35 embl:CAA53052.1%3B (X75304) giantin [Homo sapiens]%3B E%3D0.78 PFAM: PF00034%3B Cytochrome c%3B E%3D0.017 PF02736%3B Myosin N-terminal SH3-like domai%3B E%3D0.62 gene gene3479 http://www.ncbi.nlm.nih.gov/gene/?term=RB6185 RB6188 RB6188 RB6188 3244178 3244384 - hypothetical protein gene gene3480 http://www.ncbi.nlm.nih.gov/gene/?term=RB6188 RB6189 RB6189 RB6189 3244395 3244529 - hypothetical protein gene gene3481 http://www.ncbi.nlm.nih.gov/gene/?term=RB6189 RB6190 RB6190 RB6190 3244532 3245911 - hypothetical protein best DB hits: BLAST: embl:CAC24059.1%3B (AL512981) Hypothetical [Sulfolobus%3B E%3D0.17 gene gene3482 http://www.ncbi.nlm.nih.gov/gene/?term=RB6190 RB6193 RB6193 RB6193 3245908 3246096 - hypothetical protein gene gene3483 http://www.ncbi.nlm.nih.gov/gene/?term=RB6193 RB6194 RB6194 RB6194 3245988 3246119 - hypothetical protein gene gene3484 http://www.ncbi.nlm.nih.gov/gene/?term=RB6194 RB6196 RB6196 RB6196 3246209 3247717 - choline sulfatase PMID: 9736747 best DB hits: BLAST: gb:AAC13371.1%3B (U39940) choline sulfatase [Sinorhizobium%3B E%3D4e-30 swissprot:O69787%3B BETC_RHIME CHOLINE-SULFATASE%3B E%3D4e-30 gb:AAA16877.1%3B (L13329) iduronate-2-sulfatase [Homo sapiens]%3B E%3D2e-28 COG: PA0031%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D4e-23 PA0924%3B COG3083 Predicted hydrolase of alkaline phosphatase%3B E%3D0.003 PFAM: PF00884%3B Sulfatase%3B E%3D7.4e-20 gene gene3485 http://www.ncbi.nlm.nih.gov/gene/?term=RB6196 RB6199 RB6199 RB6199 3247889 3249025 - dehydrogenase-like protein PMID: 8821935 best DB hits: BLAST: pir:S70672%3B dehydrogenase homolog - Bordetella pertussis -----%3B E%3D5e-50 gb:AAD45293.1%3B AF156256_1 (AF156256) dehydrogenase%3B E%3D3e-44 embl:CAC24056.1%3B (AL512981) Hypothetical-conserved [Sulfolobus%3B E%3D3e-43 COG: TM0585%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D2e-40 PFAM: PF01958%3B Domain of unknown function DUF%3B E%3D0.00025 PF01408%3B Oxidoreductase%2C NAD-bin%3B E%3D2.1e-40 PF02894%3B Oxidoreductase%2C C-termi%3B E%3D1.4e-16 gene gene3486 http://www.ncbi.nlm.nih.gov/gene/?term=RB6199 RB62 RB62 RB62 25588 25983 + hypothetical protein gene gene36 http://www.ncbi.nlm.nih.gov/gene/?term=RB62 RB6201 RB6201 mfd mfd 3248886 3252431 + transcription-repair coupling factor PMID: 7584024 best DB hits: BLAST: swissprot:P37474%3B MFD_BACSU TRANSCRIPTION-REPAIR COUPLING FACTOR%3B E%3D0.0 gb:AAC98900.1%3B (AF023181) transcription-repair coupling factor%3B E%3D0.0 gb:AAD03810.1%3B (AF054624) transcription-repair coupling factor%3B E%3D1e-179 COG: BS_mfd%3B COG1197 Transcription-repair coupling factor - superfamily II%3B E%3D0.0 TM0205%3B COG1200 RecG-like helicases%3B E%3D4e-69 PFAM: PF00270%3B DEAD/DEAH box helicase%3B E%3D2.7e-27 PF00271%3B Helicase conserved C-terminal%3B E%3D5.3e-18 gene gene3487 http://www.ncbi.nlm.nih.gov/gene/?term=RB6201 RB6207 RB6207 RB6207 3252449 3253759 + hypothetical protein PMID: 9389475 best DB hits: BLAST: gb:AAB89850.1%3B (AE001008) conserved hypothetical protein%3B E%3D2e-05 swissprot:P54741%3B AFSK_STRCO SERINETHREONINE PROTEIN KINASE AFSK%3B E%3D0.064 embl:CAB88430.1%3B (AL353815) serinethreonine protein kinase%3B E%3D0.064 COG: AF1399%3B COG1520 Uncharacterized proteins of WD40-like repeat family%3B E%3D2e-06 PFAM: PF01011%3B PQQ enzyme repeat%3B E%3D0.47 PF02316%3B Mu DNA-binding domain%3B E%3D0.84 gene gene3488 http://www.ncbi.nlm.nih.gov/gene/?term=RB6207 RB6209 RB6209 RB6209 3253663 3254859 + hypothetical protein PMID: 8688087 best DB hits: BLAST: swissprot:Q58250%3B Y840_METJA HYPOTHETICAL PROTEIN MJ0840 -----%3B E%3D3e-29 pir:C69211%3B conserved hypothetical protein MTH834 - Methanobacterium%3B E%3D1e-24 gb:AAB90759.1%3B (AE001071) conserved hypothetical protein%3B E%3D8e-24 COG: MJ0840%3B COG1548 Predicted nucleotide-binding enzyme%3B E%3D2e-30 PFAM: PF00370%3B FGGY family of carbohydrate kinases%2C%3B E%3D0.78 PF01897%3B Protein of unknown function DUF66%3B E%3D8.5e-35 gene gene3489 http://www.ncbi.nlm.nih.gov/gene/?term=RB6209 RB621 RB621 RB621 338154 338729 - sigma factor PMID: 12024217 best DB hits: BLAST: gb:AAB64901.1%3B AAB64901 (U33050) Spp41p: Negative regulator of prp%3B E%3D0.81 swissprot:P38904%3B SP41_YEAST SPP41 PROTEIN ----- gb: AAA20494.1%3B E%3D0.81 gene gene344 http://www.ncbi.nlm.nih.gov/gene/?term=RB621 RB6210 RB6210 RB6210 3254829 3255473 + hypothetical protein best DB hits: PFAM: PF00696%3B Amino acid kinase%3B E%3D0.24 gene gene3490 http://www.ncbi.nlm.nih.gov/gene/?term=RB6210 RB6211 RB6211 RB6211 3255495 3257693 - hypothetical protein PMID: 11474104 best DB hits: BLAST: embl:CAB53476.1%3B (AJ245900) CAA30373.1 protein [Oryza sativa]%3B E%3D0.023 pir:B70126%3B surface-located membrane protein 1 (lmp1) homolog - Lyme%3B E%3D0.091 gb:AAD05531.1%3B (AF083240) c-type cytochrome precursor [Shewanella%3B E%3D0.093 COG: BB0210%3B COG0457 TPR-repeat-containing proteins%3B E%3D0.008 PFAM: PF00515%3B TPR Domain%3B E%3D0.00026 gene gene3491 http://www.ncbi.nlm.nih.gov/gene/?term=RB6211 RB6215 RB6215 glyA glyA 3257871 3259133 + serine hydroxymethyltransferase (serine methylase SHMT) PMID: 9537320 best DB hits: BLAST: swissprot:O66776%3B GLYA_AQUAE SERINE HYDROXYMETHYLTRANSFERASE%3B E%3D1e-135 swissprot:P39148%3B GLYA_BACSU SERINE HYDROXYMETHYLTRANSFERASE%3B E%3D1e-132 ddbj:BAB07484.1%3B (AP001519) serine hydroxymethyltransferase%3B E%3D1e-131 COG: aq_479%3B COG0112 Glycine hydroxymethyltransferase%3B E%3D1e-136 PFAM: PF00464%3B Serine hydroxymethyltransferase%3B E%3D7.9e-234 gene gene3492 http://www.ncbi.nlm.nih.gov/gene/?term=RB6215 RB6217 RB6217 RB6217 3259199 3259624 + response regulator PMID: 10376842 best DB hits: BLAST: gb:AAD28578.1%3B AF121341_2 (AF121341) response regulator%3B E%3D7e-27 gb:AAA87378.1%3B (L42554) pleD gene product [Caulobacter%3B E%3D3e-21 pir:S74913%3B sensory transduction system regulatory protein slr1400 -%3B E%3D4e-21 COG: slr1400_1%3B COG0784 CheY-like receiver domains%3B E%3D4e-20 slr0115%3B COG0745 Response regulators consisting of a CheY-like%3B E%3D2e-19 VC0622_4%3B COG0784 CheY-like receiver domains%3B E%3D4e-19 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D3.1e-37 gene gene3493 http://www.ncbi.nlm.nih.gov/gene/?term=RB6217 RB6218 RB6218 RB6218 3259575 3259775 + hypothetical protein gene gene3494 http://www.ncbi.nlm.nih.gov/gene/?term=RB6218 RB6220 RB6220 RB6220 3259826 3260908 + hypothetical protein gene gene3495 http://www.ncbi.nlm.nih.gov/gene/?term=RB6220 RB6221 RB6221 RB6221 3260995 3264012 - signal peptide PMID: 11759840 gene gene3496 http://www.ncbi.nlm.nih.gov/gene/?term=RB6221 RB6225 RB6225 RB6225 3264080 3264211 - hypothetical protein gene gene3497 http://www.ncbi.nlm.nih.gov/gene/?term=RB6225 RB6226 RB6226 RB6226 3264248 3265393 - (Fe-S)-binding protein PMID: 10984043 best DB hits: BLAST: pir:D83026%3B conserved hypothetical protein PA4950 [imported] -%3B E%3D4e-52 swissprot:P39288%3B YJES_ECOLI HYPOTHETICAL 43.1 KD PROTEIN IN%3B E%3D1e-48 gb:AAG59362.1%3B AE005650_1 (AE005650) orf%2C hypothetical protein%3B E%3D2e-48 COG: PA4950%3B COG1600 Uncharacterized Fe-S protein%3B E%3D4e-53 PFAM: PF00037%3B 4Fe-4S binding domain%3B E%3D0.026 gene gene3498 http://www.ncbi.nlm.nih.gov/gene/?term=RB6226 RB6227 RB6227 RB6227 3265390 3267153 - hypothetical protein best DB hits: BLAST: pir:T37039%3B hypothetical protein SCJ12.22 - Streptomyces coelicolor%3B E%3D6e-05 swissprot:P39066%3B ACUB_BACSU ACETOIN UTILIZATION ACUB PROTEIN%3B E%3D0.016 pir:T36952%3B conserved hypothetical protein SCJ1.19c - Streptomyces%3B E%3D0.021 COG: BS_acuB%3B COG0517 CBS domains%3B E%3D0.002 PFAM: PF00999%3B Sodium/hydrogen exchanger fami%3B E%3D0.024 PF00571%3B CBS domain%3B E%3D0.00084 gene gene3499 http://www.ncbi.nlm.nih.gov/gene/?term=RB6227 RB6230 RB6230 RB6230 3267331 3269295 - IRE (iron responsive element) best DB hits: BLAST: ddbj:BAA89783.1%3B (AB037133) IRE [Arabidopsis thaliana] -----%3B E%3D0.25 gene gene3500 http://www.ncbi.nlm.nih.gov/gene/?term=RB6230 RB6233 RB6233 RB6233 3269292 3271181 - hypothetical protein gene gene3501 http://www.ncbi.nlm.nih.gov/gene/?term=RB6233 RB6236 RB6236 RB6236 3271178 3272203 - ABC transporter ATP-binding protein PMID: 8590279 best DB hits: BLAST: swissprot:P22040%3B Y415_SYNY3 HYPOTHETICAL ABC TRANSPORTER%3B E%3D8e-56 gb:AAC36155.1%3B (AF003632) PilH [Myxococcus xanthus]%3B E%3D1e-48 pir:A39025%3B probable membrane protein%2C cpn60 5'-region -%3B E%3D7e-47 COG: sll0415%3B COG1131 ABC-type multidrug transport system%2C ATPase%3B E%3D7e-57 PFAM: PF00005%3B ABC transporter%3B E%3D1.4e-59 gene gene3502 http://www.ncbi.nlm.nih.gov/gene/?term=RB6236 RB6237 RB6237 folC folC 3272353 3273984 + folylpolyglutamate synthase/dihydrofolate synthase PMID: 10360571 best DB hits: BLAST: pir:D72411%3B folylpolyglutamate synthasedihydrofolate synthase -%3B E%3D4e-40 ddbj:BAB06756.1%3B (AP001517) folyl-polyglutamate synthetase%3B E%3D8e-39 swissprot:Q05865%3B FOLC_BACSU FOLYLPOLYGLUTAMATE SYNTHASE%3B E%3D8e-38 COG: TM0166%3B COG0285 Folylpolyglutamate synthase%3B E%3D4e-41 PFAM: PF01225%3B Mur ligase%2C catalytic dom%3B E%3D1.6e-13 PF02875%3B Mur ligase%2C glutamate lig%3B E%3D0.00031 gene gene3503 http://www.ncbi.nlm.nih.gov/gene/?term=RB6237 RB6238 RB6238 RB6238 3273915 3275111 - hypothetical protein PMID: 10952301 best DB hits: BLAST: pir:F82343%3B conserved hypothetical protein VC0271 [imported] -%3B E%3D3e-57 swissprot:P74078%3B YC54_SYNY3 HYPOTHETICAL 38.3 KD PROTEIN SLL1254%3B E%3D9e-39 gb:AAG20419.1%3B (AE005114) hemolysin protein%3B Hlp [Halobacterium%3B E%3D8e-17 COG: VC0271%3B COG1253 Uncharacterized CBS domain-containing proteins%3B E%3D3e-58 PFAM: PF01595%3B Domain of unknown function DUF21%3B E%3D2.1e-20 PF00571%3B CBS domain%3B E%3D0.0002 gene gene3504 http://www.ncbi.nlm.nih.gov/gene/?term=RB6238 RB6239 RB6239 RB6239 3275123 3275302 - hypothetical protein gene gene3505 http://www.ncbi.nlm.nih.gov/gene/?term=RB6239 RB624 RB624 RB624 338779 339549 - hypothetical protein gene gene345 http://www.ncbi.nlm.nih.gov/gene/?term=RB624 RB6240 RB6240 fabG fabG 3275350 3276192 + 3-oxoacyl-ACP reductase PMID: 10484179 best DB hits: BLAST: ddbj:BAB06210.1%3B (AP001515) 3-oxoacyl-(acyl-carrier protein)%3B E%3D1e-17 pir:H75014%3B 3-oxoacyl-[acyl-carrier-protein] reductase PAB1085 -%3B E%3D3e-16 gb:AAK04872.1%3B AE006311_3 (AE006311) 3-oxoacyl-acyl carrier%3B E%3D9e-14 COG: BH2491%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D1e-18 PAB1085%3B COG1028 Dehydrogenases with different specificities%3B E%3D3e-17 DR1943%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D2e-13 PFAM: PF00106%3B short chain dehydrogenase%3B E%3D4.2e-11 PF00678%3B Short chain dehydrogenase/reduct%3B E%3D1.3e-06 gene gene3506 http://www.ncbi.nlm.nih.gov/gene/?term=RB6240 RB6241 RB6241 RB6241 3276131 3277327 - hexosyltransferase PMID: 10484179 best DB hits: BLAST: ddbj:BAB06407.1%3B (AP001516)%3B E%3D4e-06 pir:G70961%3B probable hexosyltransferase (EC 2.4.1.-) Rv0225%3B E%3D2e-04 gb:AAF14309.1%3B (U45308) SqdX [Synechococcus sp. PCC 7942]%3B E%3D4e-04 COG: BH2688%3B COG0438 Predicted glycosyltransferases%3B E%3D3e-07 PFAM: PF00534%3B Glycosyl transferases group 1%3B E%3D4.6e-08 gene gene3507 http://www.ncbi.nlm.nih.gov/gene/?term=RB6241 RB6242 RB6242 RB6242 3277324 3278667 - hypothetical protein gene gene3508 http://www.ncbi.nlm.nih.gov/gene/?term=RB6242 RB6243 RB6243 RB6243 3278647 3278907 + hypothetical protein gene gene3509 http://www.ncbi.nlm.nih.gov/gene/?term=RB6243 RB6244 RB6244 RB6244 3278695 3278979 - hypothetical protein gene gene3510 http://www.ncbi.nlm.nih.gov/gene/?term=RB6244 RB6245 RB6245 RB6245 3278762 3279085 + hypothetical protein gene gene3511 http://www.ncbi.nlm.nih.gov/gene/?term=RB6245 RB6246 RB6246 serC serC 3279082 3280233 + phosphoserine aminotransferase catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate%3B required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine gene gene3512 http://www.ncbi.nlm.nih.gov/gene/?term=RB6246 RB6248 RB6248 serA serA 3280282 3281904 + D-3-phosphoglycerate dehydrogenase catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis%3B can also reduce alpha ketoglutarate to form 2-hydroxyglutarate gene gene3513 http://www.ncbi.nlm.nih.gov/gene/?term=RB6248 RB625 RB625 RB625 339497 339703 - hypothetical protein gene gene346 http://www.ncbi.nlm.nih.gov/gene/?term=RB625 RB6250 RB6250 RB6250 3282079 3282186 + hypothetical protein gene gene3514 http://www.ncbi.nlm.nih.gov/gene/?term=RB6250 RB6251 RB6251 RB6251 3282200 3284317 - hypothetical protein gene gene3515 http://www.ncbi.nlm.nih.gov/gene/?term=RB6251 RB6254 RB6254 manC manC 3284503 3285573 - mannose-1-phosphate guanylyltransferase PMID: 10567266 best DB hits: BLAST: pir:B75596%3B mannose-1-phosphate guanylyltransferase - Deinococcus%3B E%3D5e-67 pir:S75700%3B GDP-mannose pyrophosphorylase - Synechocystis sp.%3B E%3D9e-59 ddbj:BAB03201.1%3B (AB046360) GOP-mannose phosphorylase%3B E%3D2e-52 COG: DRA0032%3B COG0836 Mannose-1-phosphate guanylyltransferase%3B E%3D5e-68 PFAM: PF01128%3B Uncharacterized protein famil%3B E%3D0.27 PF00483%3B Nucleotidyl transferase%3B E%3D1.8e-54 PF01050%3B Mannose-6-phosphate isomerase%3B E%3D3.3e-05 gene gene3516 http://www.ncbi.nlm.nih.gov/gene/?term=RB6254 RB6255 RB6255 RB6255 3285625 3287961 - deca-heme c-type cytochrome best DB hits: BLAST: gb:AAD05534.1%3B (AF083240) deca-heme c-type cytochrome [Shewanella%3B E%3D4e-04 gb:AAD05531.1%3B (AF083240) c-type cytochrome precursor [Shewanella%3B E%3D4e-04 swissprot:P32707%3B NRFB_ECOLI CYTOCHROME C-TYPE PROTEIN NRFB%3B E%3D0.029 COG: MTH83%3B COG0457 TPR-repeat-containing proteins%3B E%3D0.007 PFAM: PF00515%3B TPR Domain%3B E%3D0.014 gene gene3517 http://www.ncbi.nlm.nih.gov/gene/?term=RB6255 RB6257 RB6257 RB6257 3288043 3288666 - hypothetical protein gene gene3518 http://www.ncbi.nlm.nih.gov/gene/?term=RB6257 RB6259 RB6259 tolQ tolQ 3288663 3289493 - TolQ-type transport protein PMID: 10984043 best DB hits: BLAST: pir:G83274%3B probable tolQ-type transport protein PA2983 [imported] -%3B E%3D1e-15 pir:D82726%3B conserved hypothetical protein XF1079 [imported] -%3B E%3D4e-10 gb:AAC69453.1%3B (AF047974) TolR [Vibrio cholerae]%3B E%3D1e-09 COG: PA2983%3B COG0811 Biopolymer transport proteins%3B E%3D1e-16 PFAM: PF01618%3B MotA/TolQ/ExbB proton channel famil%3B E%3D1.9e-20 gene gene3519 http://www.ncbi.nlm.nih.gov/gene/?term=RB6259 RB626 RB626 RB626 339710 340357 + hypothetical protein best DB hits: PFAM: PF00036%3B EF hand%3B E%3D0.00026 gene gene347 http://www.ncbi.nlm.nih.gov/gene/?term=RB626 RB6263 RB6263 RB6263 3289490 3291310 - hypothetical protein gene gene3520 http://www.ncbi.nlm.nih.gov/gene/?term=RB6263 RB6266 RB6266 RB6266 3291307 3293502 - hypothetical protein gene gene3521 http://www.ncbi.nlm.nih.gov/gene/?term=RB6266 RB6269 RB6269 galE galE 3293581 3294798 - UDP-glucose 4-epimerase PMID: 11058132 best DB hits: BLAST: swissprot:Q9KDV3%3B GALE_BACHD UDP-GLUCOSE 4-EPIMERASE%3B E%3D9e-99 pir:A69184%3B UDP-glucose 4-epimerase - Methanobacterium%3B E%3D3e-98 gb:AAK06077.1%3B AE006428_1 (AE006428) UDP-glucose 4-epimerase (EC%3B E%3D2e-93 COG: BH1108%3B COG1087 UDP-glucose 4-epimerase%3B E%3D1e-100 TM0509%3B COG0451 Nucleoside-diphosphate-sugar epimerases%3B E%3D9e-41 MPN257%3B COG1087 UDP-glucose 4-epimerase%3B E%3D6e-38 PFAM: PF02716%3B Isoflavone reductase%3B E%3D0.13 PF02254%3B KTN NAD-binding domain%3B E%3D0.22 PF00984%3B UDP-glucose/GDP-mannose dehyd%3B E%3D0.0085 gene gene3522 http://www.ncbi.nlm.nih.gov/gene/?term=RB6269 RB6271 RB6271 RB6271 3294814 3295791 + integrase/recombinase PMID: 10484179 best DB hits: BLAST: ddbj:BAB05248.1%3B (AP001512) integraserecombinase [Bacillus%3B E%3D1e-56 swissprot:P46352%3B RIPX_BACSU PROBABLE INTEGRASERECOMBINASE RIPX%3B E%3D1e-54 pir:A82080%3B integraserecombinase XerD VC2419 [imported] - Vibrio%3B E%3D5e-53 COG: BH1529%3B COG0582 Integrase%3B E%3D1e-57 PFAM: PF02899%3B Phage integrase%2C N-terminal S%3B E%3D1.8e-20 PF00589%3B Phage integrase%3B E%3D1.6e-50 gene gene3523 http://www.ncbi.nlm.nih.gov/gene/?term=RB6271 RB6272 RB6272 fabH fabH 3295807 3296844 - 3-oxoacyl-ACP synthase III FabH%3B beta-ketoacyl-acyl carrier protein synthase III%3B catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation%3B differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs gene gene3524 http://www.ncbi.nlm.nih.gov/gene/?term=RB6272 RB6274 RB6274 RB6274 3296951 3297130 - hypothetical protein gene gene3525 http://www.ncbi.nlm.nih.gov/gene/?term=RB6274 RB6276 RB6276 hup hup 3297187 3297504 - DNA-binding protein HU PMID: 10910347 best DB hits: BLAST: pir:D82620%3B histone-like protein XF1943 [imported] - Xylella%3B E%3D4e-14 pir:JC6029%3B histone H1 homolog - Bordetella pertussis ----- gb:%3B E%3D4e-13 ddbj:BAB05028.1%3B (AP001511) non-specific DNA-binding protein II%3B E%3D3e-05 COG: BH1309%3B COG0776 Bacterial nucleoid DNA-binding protein%3B E%3D3e-06 PFAM: PF00216%3B Bacterial DNA-binding protein%3B E%3D7.4e-07 gene gene3526 http://www.ncbi.nlm.nih.gov/gene/?term=RB6276 RB6278 RB6278 RB6278 3297678 3302303 - cyclophilin type peptidyl-prolyl cis-trans isomerase PMID: 7584044 best DB hits: BLAST: ddbj:BAA07555.1%3B (D38552) The ha1539 protein is related to%3B E%3D1e-19 gb:AAF58019.1%3B (AE003807) CG7747 gene product [Drosophila%3B E%3D2e-18 pir:T48940%3B hypothetical protein F14L2.150 - Arabidopsis thaliana%3B E%3D4e-18 COG: VNG1914G%3B COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) -%3B E%3D3e-15 PFAM: PF00160%3B Cyclophilin type peptidyl-prol%3B E%3D6.4e-32 gene gene3527 http://www.ncbi.nlm.nih.gov/gene/?term=RB6278 RB6281 RB6281 RB6281 3302547 3302903 + hypothetical protein gene gene3528 http://www.ncbi.nlm.nih.gov/gene/?term=RB6281 RB6282 RB6282 RB6282 3302795 3303397 + hypothetical protein gene gene3529 http://www.ncbi.nlm.nih.gov/gene/?term=RB6282 RB6283 RB6283 RB6283 3303404 3303589 - hypothetical protein gene gene3530 http://www.ncbi.nlm.nih.gov/gene/?term=RB6283 RB6285 RB6285 sahH sahH 3303599 3304945 - adenosylhomocysteinase catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine gene gene3531 http://www.ncbi.nlm.nih.gov/gene/?term=RB6285 RB6286 RB6286 RB6286 3304962 3305303 + hypothetical protein gene gene3532 http://www.ncbi.nlm.nih.gov/gene/?term=RB6286 RB6288 RB6288 RB6288 3305300 3307852 + signal peptide gene gene3533 http://www.ncbi.nlm.nih.gov/gene/?term=RB6288 RB6289 RB6289 RB6289 3307849 3308577 - hydrolase best DB hits: BLAST: pir:T45716%3B hypothetical protein F1P2.110 - Arabidopsis thaliana%3B E%3D4e-07 gb:AAG10612.1%3B AC008030_12 (AC008030) Unknown protein [Arabidopsis%3B E%3D1e-05 gb:AAD10154.1%3B (AC005917) esterase [Arabidopsis%3B E%3D1e-05 COG: XF1829%3B COG2945 Predicted hydrolase of the alpha/beta superfamily%3B E%3D6e-06 CT149%3B COG1073 Hydrolases of the alpha/beta superfamily%3B E%3D0.008 PFAM: PF00561%3B alpha/beta hydrolase fold%3B E%3D0.0058 PF00293%3B MutT-like domain%3B E%3D0.7 gene gene3534 http://www.ncbi.nlm.nih.gov/gene/?term=RB6289 RB629 RB629 RB629 340354 340629 + hypothetical protein gene gene348 http://www.ncbi.nlm.nih.gov/gene/?term=RB629 RB6291 RB6291 RB6291 3308706 3309743 - hypothetical protein PMID: 10484179 best DB hits: BLAST: swissprot:P54466%3B YQFA_BACSU HYPOTHETICAL 35.6 KD PROTEIN IN%3B E%3D7e-57 embl:CAA12151.1%3B (AJ224829) ORF1 [Bacillus megaterium]%3B E%3D2e-54 ddbj:BAB05076.1%3B (AP001511) BH1357~~unknown conserved protein in%3B E%3D3e-54 gene gene3535 http://www.ncbi.nlm.nih.gov/gene/?term=RB6291 RB6292 RB6292 RB6292 3309876 3310694 - hypothetical protein PMID: 8688087 best DB hits: BLAST: swissprot:Q58114%3B Y703_METJA HYPOTHETICAL PROTEIN MJ0703 -----%3B E%3D9e-14 gb:AAG32955.1%3B (AF032114) unknown [Methylobacterium extorquens]%3B E%3D6e-07 pir:A69189%3B phosphoribosylformimino-5-aminoimidazole carboxamide%3B E%3D4e-05 COG: MJ0703%3B COG1411 Archaeal family of HisA paralogs%3B E%3D9e-15 gene gene3536 http://www.ncbi.nlm.nih.gov/gene/?term=RB6292 RB6296 RB6296 RB6296 3310691 3311119 - hypothetical protein gene gene3537 http://www.ncbi.nlm.nih.gov/gene/?term=RB6296 RB6298 RB6298 RB6298 3311120 3311431 + hypothetical protein gene gene3538 http://www.ncbi.nlm.nih.gov/gene/?term=RB6298 RB6300 RB6300 trpG trpG 3311474 3312100 + anthranilate synthase component II (glutamine amido-transferase) best DB hits: BLAST: swissprot:P20576%3B TRPG_PSEAE ANTHRANILATE SYNTHASE COMPONENT II%3B E%3D1e-60 pir:A35114%3B trpG protein - Pseudomonas aeruginosa ----- gb:%3B E%3D1e-60 pir:NNPS2P%3B anthranilate synthase (EC 4.1.3.27) component II%3B E%3D2e-59 COG: PA0649%3B COG0512 Anthranilate/para-aminobenzoate synthases component%3B E%3D1e-61 pabA%3B COG0512 Anthranilate/para-aminobenzoate synthases component II%3B E%3D3e-56 BS_pabA%3B COG0512 Anthranilate/para-aminobenzoate synthases component%3B E%3D2e-55 PFAM: PF00117%3B Glutamine amidotransferase class-I%3B E%3D2.5e-68 gene gene3539 http://www.ncbi.nlm.nih.gov/gene/?term=RB6300 RB6302 RB6302 RB6302 3312186 3312701 - ADP-ribose pyrophosphatase PMID: 10360571 best DB hits: BLAST: pir:H72286%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D5e-22 swissprot:P54570%3B ADPP_BACSU ADP-RIBOSE PYROPHOSPHATASE%3B E%3D3e-21 ddbj:BAB05243.1%3B (AP001512) BH1524~~unknown conserved protein%3B E%3D3e-19 COG: TM1181%3B COG0494 NTP pyrophosphohydrolases including oxidative damage%3B E%3D5e-23 BS_yqkG%3B COG0494 NTP pyrophosphohydrolases including oxidative%3B E%3D3e-22 BH1524%3B COG0494 NTP pyrophosphohydrolases including oxidative damage%3B E%3D3e-20 PFAM: PF00293%3B MutT-like domain%3B E%3D3.7e-13 gene gene3540 http://www.ncbi.nlm.nih.gov/gene/?term=RB6302 RB6304 RB6304 RB6304 3312700 3312900 + hypothetical protein gene gene3541 http://www.ncbi.nlm.nih.gov/gene/?term=RB6304 RB6305 RB6305 RB6305 3312842 3314155 + dolichol-phosphate mannosyltransferase PMID: 9537320 best DB hits: BLAST: pir:G70463%3B dolichol-phosphate mannosyltransferase - Aquifex%3B E%3D3e-52 pir:D83201%3B probable glycosyl transferase PA3553 [imported] -%3B E%3D3e-37 gb:AAG57385.1%3B AE005458_2 (AE005458) sugar transferase%3B E%3D2e-36 COG: aq_1899%3B COG0463 Glycosyltransferases involved in cell wall%3B E%3D3e-53 yfbF%3B COG0463 Glycosyltransferases involved in cell wall biogenesis%3B E%3D3e-37 sll0501%3B COG0463 Glycosyltransferases involved in cell wall%3B E%3D1e-23 PFAM: PF00535%3B Glycosyl transferase%3B E%3D1.1e-24 gene gene3542 http://www.ncbi.nlm.nih.gov/gene/?term=RB6305 RB6307 RB6307 RB6307 3314118 3315779 + hypothetical protein gene gene3543 http://www.ncbi.nlm.nih.gov/gene/?term=RB6307 RB631 RB631 RB631 340807 343146 + serine/threonine protein kinase PMID: 7768349 best DB hits: BLAST: pir:T42100%3B serinethreonine protein kinase (EC 2.7.1.-) -%3B E%3D5e-32 pir:T36502%3B serinethreonine protein kinase - Streptomyces%3B E%3D8e-32 swissprot:P33973%3B PKN1_MYXXA SERINETHREONINE-PROTEIN KINASE PKN1%3B E%3D2e-28 COG: Rv0014c_1%3B COG0515 Serine/threonine protein kinases%3B E%3D3e-29 PFAM: PF00069%3B Protein kinase domain%3B E%3D7e-46 PF00591%3B Glycosyl transferase%2C%3B E%3D0.28 PF00515%3B TPR Domain%3B E%3D0.0037 gene gene349 http://www.ncbi.nlm.nih.gov/gene/?term=RB631 RB6310 RB6310 RB6310 3315801 3319265 + hypothetical protein gene gene3544 http://www.ncbi.nlm.nih.gov/gene/?term=RB6310 RB6314 RB6314 RB6314 3319320 3319478 + hypothetical protein gene gene3545 http://www.ncbi.nlm.nih.gov/gene/?term=RB6314 RB6315 RB6315 RB6315 3319455 3320228 - response-regulator PMID: 8264528 best DB hits: BLAST: gb:AAK00179.1%3B AF222754_7 (AF222754) probable nodulation protein%3B E%3D5e-08 pir:S39902%3B nwsB protein - Bradyrhizobium japonicum ----- embl:%3B E%3D5e-07 prf:2009374B%3B NwsB protein [Bradyrhizobium japonicum]%3B E%3D5e-07 COG: PA4196%3B COG2197 Response regulators consisting of a CheY-like%3B E%3D1e-05 PFAM: PF01726%3B LexA DNA binding domain%3B E%3D0.74 PF00196%3B Bacterial regulatory proteins%2C%3B E%3D1.4e-12 gene gene3546 http://www.ncbi.nlm.nih.gov/gene/?term=RB6315 RB6319 RB6319 RB6319 3320303 3320536 - hypothetical protein gene gene3547 http://www.ncbi.nlm.nih.gov/gene/?term=RB6319 RB6320 RB6320 RB6320 3320376 3320570 + hypothetical protein gene gene3548 http://www.ncbi.nlm.nih.gov/gene/?term=RB6320 RB6322 RB6322 RB6322 3320563 3320790 + hypothetical protein gene gene3549 http://www.ncbi.nlm.nih.gov/gene/?term=RB6322 RB6323 RB6323 RB6323 3320754 3320930 + hypothetical protein gene gene3550 http://www.ncbi.nlm.nih.gov/gene/?term=RB6323 RB6324 RB6324 RB6324 3321074 3321442 - hypothetical protein gene gene3551 http://www.ncbi.nlm.nih.gov/gene/?term=RB6324 RB6325 RB6325 RB6325 3321473 3321688 - hypothetical protein gene gene3552 http://www.ncbi.nlm.nih.gov/gene/?term=RB6325 RB6327 RB6327 RB6327 3321757 3322500 + short chain alcohol dehydrogenase-like PMID: 10617197 best DB hits: BLAST: ddbj:BAA98195.1%3B (AP002030) short chain alcohol%3B E%3D7e-21 gb:AAC95219.1%3B (AC004561) tropinone reductase%3B E%3D5e-20 gb:AAC95202.1%3B (AC004561) tropinone reductase%3B E%3D1e-19 COG: TM1724%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D4e-19 VNG1341G%3B COG1028 Dehydrogenases with different specificities%3B E%3D2e-16 TM0441%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D1e-15 PFAM: PF00899%3B ThiF family%3B E%3D0.21 PF02254%3B KTN NAD-binding domain%3B E%3D0.066 PF00106%3B short chain dehydrogenase%3B E%3D3.9e-28 gene gene3553 http://www.ncbi.nlm.nih.gov/gene/?term=RB6327 RB6328 RB6328 RB6328 3322486 3323052 - adenylyl cyclase PMID: 9371463 best DB hits: BLAST: pir:F69084%3B conserved hypothetical protein MTH1629 -%3B E%3D1e-20 pir:C71193%3B hypothetical protein PH1819 - Pyrococcus horikoshii%3B E%3D8e-18 swissprot:Q57692%3B Y240_METJA HYPOTHETICAL PROTEIN MJ0240 -----%3B E%3D1e-17 COG: MTH1629%3B COG1437 Adenylate cyclase%2C class 2 (thermophilic)%3B E%3D1e-21 PFAM: PF01928%3B Adenylate cyclase%3B E%3D2.9e-45 gene gene3554 http://www.ncbi.nlm.nih.gov/gene/?term=RB6328 RB633 RB633 RB633 343157 345652 - peroxidase PMID: 7922023 best DB hits: BLAST: ddbj:BAA83376.1%3B (AB028841) BbTPO [Branchiostoma belcheri]%3B E%3D2e-72 pir:T23007%3B hypothetical protein K09C8.5 - Caenorhabditis elegans%3B E%3D1e-68 gb:AAF51201.1%3B (AE003582) CG3131 gene product [Drosophila%3B E%3D2e-67 PFAM: PF00404%3B Dockerin type I repeat%3B E%3D0.028 PF00141%3B Peroxidase%3B E%3D5.3e-11 gene gene350 http://www.ncbi.nlm.nih.gov/gene/?term=RB633 RB6330 RB6330 RB6330 3323121 3324008 - hypothetical protein PMID: 8843436 best DB hits: BLAST: embl:CAC08313.1%3B (AL392149) integral membrane protein%3B E%3D8e-05 gene gene3555 http://www.ncbi.nlm.nih.gov/gene/?term=RB6330 RB6331 RB6331 thiE thiE 3324024 3325151 - thiamine-phosphate pyrophosphorylase catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate gene gene3556 http://www.ncbi.nlm.nih.gov/gene/?term=RB6331 RB6332 RB6332 RB6332 3325222 3325974 + hypothetical protein PMID: 9628582 best DB hits: BLAST: ddbj:BAB10862.1%3B (AB009053) contains similarity to isoamyl%3B E%3D0.074 gene gene3557 http://www.ncbi.nlm.nih.gov/gene/?term=RB6332 RB6333 RB6333 RB6333 3325971 3326081 + hypothetical protein gene gene3558 http://www.ncbi.nlm.nih.gov/gene/?term=RB6333 RB6334 RB6334 RB6334 3326078 3326341 - hypothetical protein gene gene3559 http://www.ncbi.nlm.nih.gov/gene/?term=RB6334 RB6336 RB6336 RB6336 3326340 3326609 + hypothetical protein gene gene3560 http://www.ncbi.nlm.nih.gov/gene/?term=RB6336 RB6337 RB6337 RB6337 3326683 3327696 - hypothetical protein PMID: 10567266 best DB hits: BLAST: pir:H75377%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D1e-11 pir:S76965%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D2e-08 gene gene3561 http://www.ncbi.nlm.nih.gov/gene/?term=RB6337 RB6339 RB6339 RB6339 3327638 3328528 - hypothetical protein PMID: 8590279 best DB hits: BLAST: pir:S75891%3B hypothetical protein slr1174 - Synechocystis sp. (strain%3B E%3D9e-06 pir:E75548%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D0.011 COG: slr1174%3B COG0842 Permease component of an ABC-transporter%3B E%3D8e-07 gene gene3562 http://www.ncbi.nlm.nih.gov/gene/?term=RB6339 RB6340 RB6340 RB6340 3328447 3328977 - hypothetical protein gene gene3563 http://www.ncbi.nlm.nih.gov/gene/?term=RB6340 RB6342 RB6342 RB6342 3328977 3329153 - hypothetical protein gene gene3564 http://www.ncbi.nlm.nih.gov/gene/?term=RB6342 RB6344 RB6344 dnaG dnaG 3329190 3331400 + DNA primase PMID: 10484179 best DB hits: BLAST: ddbj:BAB05094.1%3B (AP001511) DNA primase [Bacillus halodurans]%3B E%3D1e-55 swissprot:P05096%3B PRIM_BACSU DNA PRIMASE ----- pir: A22282 DNA%3B E%3D3e-54 swissprot:P74893%3B PRIM_SYNP7 DNA PRIMASE ----- pir: T11850 DNA%3B E%3D5e-54 COG: BH1375%3B COG0358 DNA primase (bacterial type)%3B E%3D1e-56 PFAM: PF01807%3B CHC2 zinc finger%3B E%3D5.1e-26 PF01751%3B Toprim domain%3B E%3D3.1e-11 gene gene3565 http://www.ncbi.nlm.nih.gov/gene/?term=RB6344 RB6347 RB6347 RB6347 3331611 3333314 + transcription initiation factor sigma 70 PMID: 8188604 best DB hits: BLAST: pir:I40872%3B transcription initiation factor sigma 70 - Chlamydophila%3B E%3D1e-78 swissprot:Q9Z7F0%3B RPSD_CHLPN RNA POLYMERASE SIGMA FACTOR RPOD%3B E%3D9e-77 pir:E81502%3B RNA polymerase sigma factor%2C sigma-70 family CP1116%3B E%3D2e-76 COG: CPn0756%3B COG0568 DNA-directed RNA polymerase sigma subunits%3B E%3D8e-78 PFAM: PF00140%3B Sigma-70 factor%3B E%3D3.5e-109 gene gene3566 http://www.ncbi.nlm.nih.gov/gene/?term=RB6347 RB6349 RB6349 RB6349 3333462 3333602 + hypothetical protein gene gene3567 http://www.ncbi.nlm.nih.gov/gene/?term=RB6349 RB6350 RB6350 RB6350 3333612 3336110 + bifunctional cbb3-type cytochrome c oxidase subunit I/II CcoN/CcoO FixN/FixO gene gene3568 http://www.ncbi.nlm.nih.gov/gene/?term=RB6350 RB6351 RB6351 RB6351 3336171 3336347 + hypothetical protein gene gene3569 http://www.ncbi.nlm.nih.gov/gene/?term=RB6351 RB6353 RB6353 RB6353 3336344 3336961 + cytochrome c oxidase (chain III%2C cbb3-type) PMID: 10952301 best DB hits: BLAST: pir:C82200%3B cytochrome c oxidase%2C chain CcoP VC1439 [similarity] -%3B E%3D7e-15 gb:AAB02559.1%3B (U58092) cbb3-type cytochrome c oxidase CcoP%3B E%3D1e-13 pir:A83452%3B probable cytochrome c PA1552 [imported] - Pseudomonas%3B E%3D1e-13 COG: VC1439%3B COG2010 Cytochrome c%2C mono- and diheme variants%3B E%3D7e-16 PFAM: PF00034%3B Cytochrome c%3B E%3D4.2e-11 gene gene3570 http://www.ncbi.nlm.nih.gov/gene/?term=RB6353 RB6355 RB6355 RB6355 3336973 3338490 + iron-sulfur protein PMID: 10984043 best DB hits: BLAST: pir:D83130%3B probable iron-sulfur protein PA4131 [imported] -%3B E%3D7e-48 pir:G82371%3B FixG-related protein VC0036 [imported] - Vibrio cholerae%3B E%3D1e-45 pir:G81081%3B ferredoxin%2C 4Fe-4S bacterial type NMB1454 [imported] -%3B E%3D2e-45 COG: PA4131%3B COG0348 Polyferredoxin%3B E%3D6e-49 PFAM: PF00037%3B 4Fe-4S binding domain%3B E%3D0.27 gene gene3571 http://www.ncbi.nlm.nih.gov/gene/?term=RB6355 RB6356 RB6356 RB6356 3338493 3339026 + nitrogen fixation protein fixH PMID: 8661920 best DB hits: BLAST: embl:CAA64888.1%3B (X95634) fixH [Bradyrhizobium japonicum] -----%3B E%3D0.18 gene gene3572 http://www.ncbi.nlm.nih.gov/gene/?term=RB6356 RB6357 RB6357 RB6357 3339028 3339849 + hypothetical protein PMID: 10710307 best DB hits: BLAST: pir:D81161%3B conserved hypothetical protein NMB0759 [imported] -%3B E%3D2e-10 pir:A81944%3B hypothetical protein NMA0970 [imported] - Neisseria%3B E%3D9e-10 pir:G82199%3B conserved hypothetical protein VC1435 [imported] -%3B E%3D8e-06 COG: NMB0759%3B COG2836 Uncharacterized BCR%3B E%3D2e-11 gene gene3573 http://www.ncbi.nlm.nih.gov/gene/?term=RB6357 RB6360 RB6360 RB6360 3339859 3342360 + cation-transporting P-type ATPase PMID: 10984043 best DB hits: BLAST: pir:F83451%3B probable cation-transporting P-type ATPase PA1549%3B E%3D2e-85 pir:A82200%3B cation transport ATPase%2C E1-E2 family VC1437 [imported]%3B E%3D3e-77 pir:D81129%3B cation transport ATPase%2C E1-E2 family NMB1042 [imported]%3B E%3D6e-74 COG: PA1549%3B COG2217 Cation transport ATPases%3B E%3D2e-86 PFAM: PF00403%3B Heavy-metal-associated domain%3B E%3D5.3e-08 PF00122%3B E1-E2 ATPase%3B E%3D4.1e-72 PF00702%3B haloacid dehalogenase-like hydro%3B E%3D2.6e-22 gene gene3574 http://www.ncbi.nlm.nih.gov/gene/?term=RB6360 RB6363 RB6363 RB6363 3342357 3342566 + nitrogen fixation protein fixS PMID: 10984043 best DB hits: BLAST: pir:E83451%3B conserved hypothetical protein PA1548 [imported] -%3B E%3D0.036 embl:CAA64890.1%3B (X95634) fixS [Bradyrhizobium japonicum]%3B E%3D0.30 pir:C81074%3B fixS protein NMB1516 [imported] - Neisseria%3B E%3D0.62 COG: PA1548%3B COG3197 Uncharacterized protein%2C possibly involved in%3B E%3D0.003 gene gene3575 http://www.ncbi.nlm.nih.gov/gene/?term=RB6363 RB6364 RB6364 RB6364 3342586 3343374 + ATP/GTP-binding protein PMID: 10684935 best DB hits: BLAST: pir:E81578%3B conserved hypothetical protein CP0417 [imported] -%3B E%3D8e-13 pir:C71559%3B probable outer membrane leader peptide CT073 - Chlamydia%3B E%3D9e-13 pir:A81713%3B conserved hypothetical protein TC0345 [imported] -%3B E%3D2e-12 gene gene3576 http://www.ncbi.nlm.nih.gov/gene/?term=RB6364 RB6365 RB6365 RB6365 3343390 3344547 - hypothetical protein PMID: 10731132 best DB hits: BLAST: gb:AAF53305.1%3B (AE003640) CG16956 gene product [Drosophila%3B E%3D0.88 gene gene3577 http://www.ncbi.nlm.nih.gov/gene/?term=RB6365 RB6369 RB6369 RB6369 3344826 3345236 + nuclear calmodulin-binding protein best DB hits: BLAST: gb:AAC69888.1%3B (AF098788) nuclear calmodulin-binding protein%3B E%3D0.13 gene gene3578 http://www.ncbi.nlm.nih.gov/gene/?term=RB6369 RB637 RB637 RB637 345888 346430 + ECF subfamily RNA polymerase sigma-70 factor PMID: 7889935 best DB hits: BLAST: gb:AAK03873.1%3B (AE006215) RpoE [Pasteurella multocida]%3B E%3D2e-07 swissprot:P44790%3B RPOE_HAEIN RNA POLYMERASE SIGMA-E FACTOR%3B E%3D2e-06 gb:AAD42769.1%3B AF121849_1 (AF121849) SigG [Synechococcus sp. PCC%3B E%3D2e-05 COG: HI0628%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D2e-07 PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D0.13 gene gene351 http://www.ncbi.nlm.nih.gov/gene/?term=RB637 RB6370 RB6370 hydG hydG 3345223 3346725 + hydrogenase regulatory protein HydG PMID: 1756170 best DB hits: BLAST: gb:AAF33506.1%3B (AF170176) Salmonella typhimurium transcriptional%3B E%3D3e-12 gb:AAG59807.1%3B AF305914_2 (AF305914) HydG [Klebsiella oxytoca]%3B E%3D3e-12 swissprot:P25852%3B HYDG_SALTY transcriptional regulator%3B E%3D4e-12 COG: hydG%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D2e-12 BS_yqiR_2%3B COG1221 NtrC family transcriptional regulators%2C ATPase%3B E%3D4e-08 glnG%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D1e-07 PFAM: PF00158%3B Sigma-54 interaction domain%3B E%3D2e-05 gene gene3579 http://www.ncbi.nlm.nih.gov/gene/?term=RB6370 RB6372 RB6372 RB6372 3346722 3347120 + hypothetical protein gene gene3580 http://www.ncbi.nlm.nih.gov/gene/?term=RB6372 RB6373 RB6373 trmE trmE 3347077 3348357 + tRNA modification GTPase PMID: 1552862 best DB hits: BLAST: swissprot:P25811%3B THDF_BACSU POSSIBLE THIOPHENE AND FURAN%3B E%3D7e-21 gb:AAK06340.1%3B AE006453_4 (AE006453) GTP-binding protein ThdF%3B E%3D3e-20 embl:CAA71458.1%3B (Y10436) orf452%3B translated orf similarity to%3B E%3D2e-17 COG: BS_thdF%3B COG0486 Predicted GTPase%3B E%3D7e-22 DR2308%3B COG1160 Predicted GTPases%3B E%3D8e-12 TP0550%3B COG0486 Predicted GTPase%3B E%3D1e-11 PFAM: PF00071%3B Ras family%3B E%3D0.77 PF02421%3B Ferrous iron transport protein B%3B E%3D1.3e-05 PF01926%3B GTPase of unknown function%3B E%3D1e-06 gene gene3581 http://www.ncbi.nlm.nih.gov/gene/?term=RB6373 RB6374 RB6374 RB6374 3348288 3349616 + hypothetical protein best DB hits: BLAST: pir:T35587%3B hypothetical protein SC6G4.36c SC6G4.36c - Streptomyces%3B E%3D5e-11 pir:H70859%3B hypothetical protein Rv3037c - Mycobacterium%3B E%3D2e-10 COG: Rv3037c%3B COG0500 SAM-dependent methyltransferases%3B E%3D2e-11 gene gene3582 http://www.ncbi.nlm.nih.gov/gene/?term=RB6374 RB6375 RB6375 RB6375 3349681 3350574 + hypothetical protein gene gene3583 http://www.ncbi.nlm.nih.gov/gene/?term=RB6375 RB6377 RB6377 mdoH mdoH 3350626 3352671 - glucosyltransferase MdoH necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space gene gene3584 http://www.ncbi.nlm.nih.gov/gene/?term=RB6377 RB6378 RB6378 RB6378 3352598 3353284 + hypothetical protein gene gene3585 http://www.ncbi.nlm.nih.gov/gene/?term=RB6378 RB6379 RB6379 RB6379 3352661 3353122 - hypothetical protein gene gene3586 http://www.ncbi.nlm.nih.gov/gene/?term=RB6379 RB638 RB638 RB638 346447 347757 + serine/threonine protein kinase PMID: 8063104 best DB hits: BLAST: swissprot:P54741%3B AFSK_STRCO SERINETHREONINE PROTEIN KINASE AFSK%3B E%3D0.077 embl:CAB88430.1%3B (AL353815) serinethreonine protein kinase%3B E%3D0.077 pir:A82284%3B conserved hypothetical protein VC0762 [imported] -%3B E%3D0.32 PFAM: PF01011%3B PQQ enzyme repeat%3B E%3D0.39 gene gene352 http://www.ncbi.nlm.nih.gov/gene/?term=RB638 RB6380 RB6380 RB6380 3353359 3353583 + hypothetical protein gene gene3587 http://www.ncbi.nlm.nih.gov/gene/?term=RB6380 RB6381 RB6381 RB6381 3353694 3355046 + hypothetical protein PMID: 10910347 best DB hits: BLAST: pir:F82557%3B hypothetical protein XF2449 [imported] - Xylella%3B E%3D3e-50 gene gene3588 http://www.ncbi.nlm.nih.gov/gene/?term=RB6381 RB6382 RB6382 RB6382 3355043 3355162 - hypothetical protein gene gene3589 http://www.ncbi.nlm.nih.gov/gene/?term=RB6382 RB6383 RB6383 mdoG mdoG 3355184 3356905 + glucan biosynthesis protein G involved in the biosynthesis of osmoregulated periplasmic glucans%3B required for the assembly of the polyglucose structure of glucan gene gene3590 http://www.ncbi.nlm.nih.gov/gene/?term=RB6383 RB6384 RB6384 RB6384 3356942 3358297 - thioredoxin related protein PMID: 7934829 best DB hits: BLAST: swissprot:P35160%3B RESA_BACSU RESA PROTEIN ----- pir: S45556%3B E%3D3e-14 pir:E69891%3B cytochrome c biogenesis protein CycX homolog homolog%3B E%3D1e-12 ddbj:BAB06587.1%3B (AP001516) thioldisulfide interchange protein%3B E%3D1e-10 COG: BS_resA%3B COG0526 Thiol-disulfide isomerase and thioredoxins%3B E%3D2e-15 PFAM: PF00578%3B AhpC/TSA family%3B E%3D0.0027 PF02630%3B SCO1/SenC%3B E%3D0.28 PF00085%3B Thioredoxin%3B E%3D1.8e-08 gene gene3591 http://www.ncbi.nlm.nih.gov/gene/?term=RB6384 RB6386 RB6386 RB6386 3358338 3359480 - hypothetical protein PMID: 10484179 best DB hits: BLAST: ddbj:BAB07065.1%3B (AP001518) BH3346~~unknown conserved protein in%3B E%3D2e-11 swissprot:P49304%3B MOCC_RHIME RHIZOPINE CATABOLISM PROTEIN MOCC%3B E%3D0.84 PFAM: PF01408%3B Oxidoreductase%2C NAD-bindi%3B E%3D0.38 gene gene3592 http://www.ncbi.nlm.nih.gov/gene/?term=RB6386 RB6387 RB6387 RB6387 3359525 3360448 - hypothetical protein PMID: 10910347 best DB hits: BLAST: pir:G82780%3B conserved hypothetical protein XF0649 [imported] -%3B E%3D3e-13 embl:CAA97104.1%3B (Z72886) ORF YGR101w [Saccharomyces cerevisiae]%3B E%3D2e-10 pir:D71258%3B probable glpG protein - syphilis spirochete -----%3B E%3D1e-09 COG: XF0649%3B COG0705 Uncharacterized membrane protein (homolog of%3B E%3D3e-14 PFAM: PF01694%3B Rhomboid family%3B E%3D2.6e-11 gene gene3593 http://www.ncbi.nlm.nih.gov/gene/?term=RB6387 RB6388 RB6388 RB6388 3360472 3360906 - hypothetical protein gene gene3594 http://www.ncbi.nlm.nih.gov/gene/?term=RB6388 RB6389 RB6389 RB6389 3360908 3361996 - hypothetical protein PMID: 10865958 best DB hits: BLAST: swissprot:P54466%3B YQFA_BACSU HYPOTHETICAL 35.6 KD PROTEIN IN%3B E%3D4e-73 ddbj:BAB05076.1%3B (AP001511) BH1357~~unknown conserved protein in%3B E%3D3e-72 embl:CAA12151.1%3B (AJ224829) ORF1 [Bacillus megaterium]%3B E%3D2e-71 gene gene3595 http://www.ncbi.nlm.nih.gov/gene/?term=RB6389 RB6390 RB6390 RB6390 3361959 3362219 + hypothetical protein gene gene3596 http://www.ncbi.nlm.nih.gov/gene/?term=RB6390 RB6391 RB6391 rbn rbn 3362175 3363908 - ribonuclease BN PMID: 8955422 best DB hits: BLAST: gb:AAC33456.1%3B (AF067083) unknown [Vitreoscilla sp.]%3B E%3D7e-14 swissprot:P32146%3B RBN_ECOLI RIBONUCLEASE BN (RNASE BN) -----%3B E%3D2e-13 pir:F83526%3B probable ribonuclease PA0951 [imported] - Pseudomonas%3B E%3D1e-12 COG: rbn%3B COG1295 tRNA-processing ribonuclease BN%3B E%3D2e-14 gene gene3597 http://www.ncbi.nlm.nih.gov/gene/?term=RB6391 RB6393 RB6393 RB6393 3363910 3364158 + hypothetical protein gene gene3598 http://www.ncbi.nlm.nih.gov/gene/?term=RB6393 RB6394 RB6394 RB6394 3364068 3365288 - 2-hydroxyacid dehydrogenase PMID: 10984043 best DB hits: BLAST: gb:AAH00605.1%3B AAH00605 (BC000605) glyoxylate%3B E%3D1e-66 ref:XP_005487.2%3B glyoxylate reductasehydroxypyruvate reductase%3B E%3D1e-66 gb:AAF51963.1%3B (AE003602) CG1236 gene product [Drosophila%3B E%3D7e-61 COG: APE1831%3B COG1052 Lactate dehydrogenase and related dehydrogenases%3B E%3D2e-60 PAB0514%3B COG0111 Phosphoglycerate dehydrogenase and related%3B E%3D3e-44 YNL274c%3B COG1052 Lactate dehydrogenase and related dehydrogenases%3B E%3D3e-34 PFAM: PF00389%3B D-isomer specific 2-hydroxyacid%3B E%3D2.4e-06 PF02826%3B D-isomer specific 2-hydroxyacid%3B E%3D2.6e-85 gene gene3599 http://www.ncbi.nlm.nih.gov/gene/?term=RB6394 RB6395 RB6395 RB6395 3364879 3367215 + PKR inhibitor (translation regulation) PMID: 7511204 best DB hits: BLAST: pir:A56534%3B P58 protein - bovine ----- gb: AAA17795.1%3B E%3D2e-08 gb:AAC52592.1%3B (U28423) p58 [Mus musculus]%3B E%3D1e-07 gb:AAC50502.1%3B (U28424) p58 [Homo sapiens]%3B E%3D2e-07 COG: BB0210%3B COG0457 TPR-repeat-containing proteins%3B E%3D2e-04 PFAM: PF00515%3B TPR Domain%3B E%3D0.65 gene gene3600 http://www.ncbi.nlm.nih.gov/gene/?term=RB6395 RB6398 RB6398 RB6398 3367281 3368609 + hypothetical protein gene gene3601 http://www.ncbi.nlm.nih.gov/gene/?term=RB6398 RB6400 RB6400 RB6400 3368649 3369926 + hypothetical protein best DB hits: PFAM: PF00397%3B WW domain%3B E%3D0.54 gene gene3602 http://www.ncbi.nlm.nih.gov/gene/?term=RB6400 RB6403 RB6403 RB6403 3369939 3370853 + response regulator PMID: 10910347 best DB hits: BLAST: pir:T34675%3B probable response regulator - Streptomyces coelicolor%3B E%3D1e-05 pir:A82535%3B transcriptional regulator LuxRUhpA family XF2608%3B E%3D4e-05 pir:T35105%3B probable two-component regulator - Streptomyces%3B E%3D7e-05 COG: XF2608%3B COG2197 Response regulators consisting of a CheY-like%3B E%3D4e-06 PA3420%3B COG2909 ATP-dependent transcriptional regulator%3B E%3D4e-04 PA3714%3B COG2197 Response regulators consisting of a CheY-like%3B E%3D4e-04 PFAM: PF00989%3B PAS domain%3B E%3D4.2e-06 PF00196%3B Bacterial regulatory proteins%2C luxR%3B E%3D3.1e-14 gene gene3603 http://www.ncbi.nlm.nih.gov/gene/?term=RB6403 RB6405 RB6405 RB6405 3371087 3371368 - hypothetical protein gene gene3605 http://www.ncbi.nlm.nih.gov/gene/?term=RB6405 RB6407 RB6407 RB6407 3371502 3371975 - hypothetical protein gene gene3606 http://www.ncbi.nlm.nih.gov/gene/?term=RB6407 RB6408 RB6408 RB6408 3371976 3372284 + hypothetical protein gene gene3607 http://www.ncbi.nlm.nih.gov/gene/?term=RB6408 RB6409 RB6409 RB6409 3372456 3373544 - hypothetical protein PMID: 8843436 best DB hits: BLAST: embl:CAB56131.1%3B (AL117669) hypothetical protein [Streptomyces%3B E%3D8e-21 pir:T35709%3B hypothetical protein SC7H1.14 SC7H1.14 - Streptomyces%3B E%3D9e-20 gene gene3608 http://www.ncbi.nlm.nih.gov/gene/?term=RB6409 RB641 RB641 RB641 347897 351409 + sensory histidine protein kinase best DB hits: BLAST: pir:G82753%3B two-component system%2C sensor protein XF0853 [imported] -%3B E%3D2e-41 gb:AAA98756.1%3B (L29642) sensor kinase [Pseudomonas fluorescens]%3B E%3D8e-39 pir:A82300%3B sensory box sensor histidine kinaseresponse regulator%3B E%3D4e-34 COG: XF0853%3B COG0642 Sensory transduction histidine kinases%3B E%3D2e-42 sll0779_1%3B COG2202 PAS/PAC domain%3B E%3D1e-23 VCA0736_1%3B COG0642 Sensory transduction histidine kinases%3B E%3D1e-23 PFAM: PF00785%3B PAC motif%3B E%3D8.5e-08 PF00989%3B PAS domain%3B E%3D0.013 PF00785%3B PAC motif%3B E%3D0.1 gene gene353 http://www.ncbi.nlm.nih.gov/gene/?term=RB641 RB6411 RB6411 truB truB 3373581 3374627 - tRNA pseudouridine synthase B PMID: 8905231 best DB hits: BLAST: swissprot:P74696%3B TRUB_SYNY3 TRNA PSEUDOURIDINE SYNTHASE B (TRNA%3B E%3D5e-36 swissprot:P72154%3B TRUB_PSEAE TRNA PSEUDOURIDINE SYNTHASE B (TRNA%3B E%3D2e-32 swissprot:P32732%3B TRUB_BACSU TRNA PSEUDOURIDINE SYNTHASE B (TRNA%3B E%3D1e-27 COG: slr0457%3B COG0130 Pseudouridine synthase%3B E%3D4e-37 PFAM: PF01509%3B TruB family pseudouridylate synthase%3B E%3D2.5e-39 gene gene3609 http://www.ncbi.nlm.nih.gov/gene/?term=RB6411 RB6413 RB6413 RB6413 3374723 3375979 - hypothetical protein gene gene3610 http://www.ncbi.nlm.nih.gov/gene/?term=RB6413 RB6415 RB6415 RB6415 3376119 3376394 - ferredoxin PMID: 6313685 best DB hits: BLAST: pdb:1F5B%3B A Chain A%2C Crystal Structure Of F2h Ferredoxin 1%3B E%3D3e-21 pdb:1FRM%3B Ferredoxin (Fdi) Mutant With Glu 46 Replaced By%3B E%3D4e-21 swissprot:P03942%3B FER_THETH FERREDOXIN ----- pir: FETWT%3B E%3D8e-21 COG: PA3621%3B COG1146 Ferredoxin 3%3B E%3D2e-20 APE2605%3B COG0437 Fe-S-cluster-containing hydrogenase components 1%3B E%3D0.004 ygfS%3B COG1142 Fe-S-cluster-containing hydrogenase components 2%3B E%3D0.005 PFAM: PF00037%3B 4Fe-4S binding domain%3B E%3D2.1e-07 gene gene3611 http://www.ncbi.nlm.nih.gov/gene/?term=RB6415 RB6416 RB6416 RB6416 3376574 3377935 + SAM-dependent methyltransferase PMID: 8905232 best DB hits: BLAST: swissprot:P75876%3B YCCW_ECOLI HYPOTHETICAL 41.1 KD PROTEIN IN%3B E%3D7e-47 ddbj:BAA35732.1%3B (D90734) Hypothetical protein [Escherichia coli]%3B E%3D7e-47 gb:AAG55453.1%3B AE005286_12 (AE005286) oxidoreductase%3B E%3D8e-47 COG: yccW%3B COG1092 Predicted SAM-dependent methyltransferases%3B E%3D7e-48 BH0124%3B COG2813 16S RNA G1207 methylase RsmC%3B E%3D1e-04 PA3048_2%3B COG1092 Predicted SAM-dependent methyltransferases%3B E%3D1e-04 PFAM: PF00107%3B Zinc-binding dehydrogenases%3B E%3D0.039 PF02005%3B N2%2CN2-dimethylguanosine tRNA methylt%3B E%3D0.033 gene gene3612 http://www.ncbi.nlm.nih.gov/gene/?term=RB6416 RB6417 RB6417 RB6417 3378045 3378794 + hypothetical protein PMID: 9634230 PMID: 7482699 best DB hits: BLAST: pir:B70700%3B hypothetical protein Rv0020c - Mycobacterium%3B E%3D8e-06 pir:T10015%3B hypothetical protein MLB1770.15c - Mycobacterium leprae%3B E%3D4e-05 ddbj:BAB20624.1%3B (AB052847) adenylate cyclase%3B E%3D0.001 COG: Rv0020c_2%3B COG1716 FHA-domain-containing proteins%3B E%3D4e-06 PFAM: PF00498%3B FHA domain%3B E%3D8.9e-17 gene gene3613 http://www.ncbi.nlm.nih.gov/gene/?term=RB6417 RB6420 RB6420 RB6420 3378859 3380619 + hypothetical protein gene gene3614 http://www.ncbi.nlm.nih.gov/gene/?term=RB6420 RB6423 RB6423 RB6423 3380603 3380740 + hypothetical protein gene gene3615 http://www.ncbi.nlm.nih.gov/gene/?term=RB6423 RB6425 RB6425 rpmJ rpmJ 3380727 3380879 + ribosomal protein L36 PMID: 9929392 best DB hits: BLAST: gb:AAC35721.1%3B (AF041468) ribosomal protein L36 [Guillardia%3B E%3D8e-07 pir:D82269%3B probable ribosomal protein L36 VC0879 [imported] -%3B E%3D1e-05 pir:B83196%3B conserved hypothetical protein PA3600 [imported] -%3B E%3D7e-05 COG: VC0879%3B COG0257 Ribosomal protein L36%3B E%3D9e-07 PFAM: PF00444%3B Ribosomal protein L36%3B E%3D6.9e-09 gene gene3616 http://www.ncbi.nlm.nih.gov/gene/?term=RB6425 RB6426 RB6426 RB6426 3380929 3382257 + hypothetical protein PMID: 11259647 gene gene3617 http://www.ncbi.nlm.nih.gov/gene/?term=RB6426 RB6428 RB6428 RB6428 3382322 3382816 - hypothetical protein PMID: 11097914 best DB hits: BLAST: gb:AAF01193.1%3B AF179401_2 (AF179401) unknown [Sinorhizobium%3B E%3D9e-28 swissprot:P74615%3B YE83_SYNY3 HYPOTHETICAL 18.5 KDA PROTEIN SLL1483%3B E%3D2e-27 swissprot:O33752%3B YH35_SYNP2 HYPOTHETICAL 13.9 KDA PROTEIN SLL1735%3B E%3D7e-20 COG: sll1483%3B COG2335 Secreted and surface protein containing%3B E%3D2e-28 PFAM: PF02469%3B Fasciclin domain%3B E%3D6.8e-44 gene gene3618 http://www.ncbi.nlm.nih.gov/gene/?term=RB6428 RB6429 RB6429 RB6429 3382813 3382998 - hypothetical protein gene gene3619 http://www.ncbi.nlm.nih.gov/gene/?term=RB6429 RB6430 RB6430 RB6430 3383157 3384044 + hypothetical protein gene gene3620 http://www.ncbi.nlm.nih.gov/gene/?term=RB6430 RB6431 RB6431 RB6431 3384209 3385699 - hypothetical protein gene gene3621 http://www.ncbi.nlm.nih.gov/gene/?term=RB6431 RB6432 RB6432 RB6432 3385719 3388430 - hypothetical protein best DB hits: PFAM: PF01002%3B Flavivirus non-structural prot%3B E%3D0.28 gene gene3622 http://www.ncbi.nlm.nih.gov/gene/?term=RB6432 RB6434 RB6434 RB6434 3388536 3388682 - hypothetical protein gene gene3623 http://www.ncbi.nlm.nih.gov/gene/?term=RB6434 RB6435 RB6435 acpS acpS 3388640 3389017 - holo-[acyl-carrier protein] synthase best DB hits: BLAST: swissprot:O69159%3B ACPS_BRAJA HOLO-[ACYL-CARRIER PROTEIN]%3B E%3D2e-10 swissprot:Q9Z8M5%3B ACPS_CHLPN HOLO-[ACYL-CARRIER PROTEIN]%3B E%3D5e-09 swissprot:P15368%3B FAS2_PENPA FATTY ACID SYNTHASE%2C SUBUNIT ALPHA%3B E%3D1e-07 COG: CPn0313%3B COG0736 Phosphopantetheinyl transferase (holo-ACP%3B E%3D5e-10 VC2457%3B COG0736 Phosphopantetheinyl transferase (holo-ACP synthase)%3B E%3D2e-06 aq_813%3B COG0736 Phosphopantetheinyl transferase (holo-ACP%3B E%3D3e-06 PFAM: PF01648%3B 4'-phosphopantetheinyl transferase s%3B E%3D6.1e-24 gene gene3624 http://www.ncbi.nlm.nih.gov/gene/?term=RB6435 RB6436 RB6436 trpS trpS 3389021 3389983 - tryptophanyl-tRNA synthetase catalyzes a two-step reaction%2C first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA gene gene3625 http://www.ncbi.nlm.nih.gov/gene/?term=RB6436 RB6438 RB6438 RB6438 3390208 3391665 - hypothetical protein gene gene3626 http://www.ncbi.nlm.nih.gov/gene/?term=RB6438 RB6440 RB6440 RB6440 3391656 3391829 + hypothetical protein gene gene3627 http://www.ncbi.nlm.nih.gov/gene/?term=RB6440 RB6441 RB6441 RB6441 3391780 3392022 - hypothetical protein gene gene3628 http://www.ncbi.nlm.nih.gov/gene/?term=RB6441 RB6442 RB6442 metB metB 3391970 3393274 + cystathionine gamma-synthase PMID: 9002610 best DB hits: BLAST: embl:CAA64383.1%3B (X94756) cystathionine gamma-synthase%3B E%3D2e-75 gb:AAF26162.1%3B AC008261_19 (AC008261) cystathionine%3B E%3D2e-75 swissprot:P55217%3B METB_ARATH CYSTATHIONINE GAMMA-SYNTHASE%2C%3B E%3D3e-75 COG: APE1226%3B COG0626 Cystathionine beta-lyases/cystathionine%3B E%3D1e-64 PA5025%3B COG2873 O-acetylhomoserine sulfhydrylase%3B E%3D4e-47 PH1093%3B COG0626 Cystathionine beta-lyases/cystathionine%3B E%3D5e-47 PFAM: PF01053%3B Cys/Met metabolism PLP-depend%3B E%3D4.5e-154 gene gene3629 http://www.ncbi.nlm.nih.gov/gene/?term=RB6442 RB6443 RB6443 metB metB 3393276 3394469 + cystathionine gamma-lyase PMID: 9843488 best DB hits: BLAST: pir:T45483%3B cystathionine gamma-lyase homolog [imported] -%3B E%3D9e-93 pir:F83595%3B probable cystathionine gamma-lyase PA0400 [imported] -%3B E%3D1e-92 gb:AAG19548.1%3B (AE005045) cystathionine alpha synthase%3B MetB%3B E%3D3e-92 COG: PA0400%3B COG0626 Cystathionine beta-lyases/cystathionine%3B E%3D1e-93 PFAM: PF01053%3B Cys/Met metabolism PLP-depend%3B E%3D2.9e-199 gene gene3630 http://www.ncbi.nlm.nih.gov/gene/?term=RB6443 RB6444 RB6444 RB6444 3394492 3394686 - hypothetical protein gene gene3631 http://www.ncbi.nlm.nih.gov/gene/?term=RB6444 RB6446 RB6446 RB6446 3394630 3395670 + hypothetical protein PMID: 9403685 best DB hits: BLAST: pir:G70121%3B conserved hypothetical protein BB0175 - Lyme disease%3B E%3D2e-13 swissprot:P71761%3B YE80_MYCTU HYPOTHETICAL 34.3 KDA PROTEIN RV1480%3B E%3D3e-11 pir:D83106%3B hypothetical protein PA4323 [imported] - Pseudomonas%3B E%3D1e-09 COG: BB0175%3B COG1721 Uncharacterized ACR%3B E%3D2e-14 APE1031%3B COG2425 Uncharacterized ACR%3B E%3D0.002 VNG0222C%3B COG1721 Uncharacterized ACR%3B E%3D0.008 PFAM: PF01882%3B Protein of unknown function DUF58%3B E%3D5.9e-18 gene gene3632 http://www.ncbi.nlm.nih.gov/gene/?term=RB6446 RB6447 RB6447 RB6447 3395667 3397970 + hypothetical protein PMID: 11756688 gene gene3633 http://www.ncbi.nlm.nih.gov/gene/?term=RB6447 RB6448 RB6448 RB6448 3397889 3400441 + en/Spm-like transposon protein PMID: 10617197 best DB hits: BLAST: gb:AAD03363.1%3B (AC005957) EnSpm-like transposon protein%3B E%3D0.89 gene gene3634 http://www.ncbi.nlm.nih.gov/gene/?term=RB6448 RB6449 RB6449 RB6449 3400438 3406236 + IgA-specific metalloendopeptidase PMID: 7783620 best DB hits: BLAST: pir:A81937%3B IgA-specific metalloendopeptidase (EC 3.4.24.13) NMA0905%3B E%3D6e-08 pir:C81169%3B IgA-specific metalloendopeptidase (EC 3.4.24.13) NMB0700%3B E%3D9e-07 pir:T18296%3B myosin heavy chain - Entamoeba histolytica ----- gb:%3B E%3D9e-05 gene gene3635 http://www.ncbi.nlm.nih.gov/gene/?term=RB6449 RB645 RB645 RB645 351560 353170 - hypothetical protein best DB hits: BLAST: embl:CAA71101.1%3B (Y09979) squalene-hopene cyclase%3B E%3D0.72 pir:T48782%3B lanosterol synthase related protein [imported] -%3B E%3D0.76 gene gene354 http://www.ncbi.nlm.nih.gov/gene/?term=RB645 RB6452 RB6452 RB6452 3406233 3407384 + hypothetical protein gene gene3636 http://www.ncbi.nlm.nih.gov/gene/?term=RB6452 RB6454 RB6454 RB6454 3407495 3407776 - hypothetical protein gene gene3637 http://www.ncbi.nlm.nih.gov/gene/?term=RB6454 RB6457 RB6457 RB6457 3407787 3407990 - hypothetical protein gene gene3638 http://www.ncbi.nlm.nih.gov/gene/?term=RB6457 RB6458 RB6458 RB6458 3407939 3408754 + signal peptide best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene3639 http://www.ncbi.nlm.nih.gov/gene/?term=RB6458 RB6459 RB6459 RB6459 3408788 3414874 + aggregation factor core protein MAFp3%2C isoform E PMID: 9346930 best DB hits: BLAST: pir:T08617%3B aggregation factor core protein MAFp3%2C isoform E -%3B E%3D5e-04 gene gene3640 http://www.ncbi.nlm.nih.gov/gene/?term=RB6459 RB6462 RB6462 RB6462 3414908 3415180 + hypothetical protein gene gene3641 http://www.ncbi.nlm.nih.gov/gene/?term=RB6462 RB6463 RB6463 RB6463 3415155 3415724 + hypothetical protein gene gene3642 http://www.ncbi.nlm.nih.gov/gene/?term=RB6463 RB6464 RB6464 sqdC sqdC 3415696 3416580 - sulfolipid biosynthesis protein SqdC PMID: 10830266 best DB hits: BLAST: gb:AAF35290.1%3B AF194444_3 (AF194444) SqdC [Sinorhizobium meliloti]%3B E%3D2e-18 pir:D81275%3B probable nucleotide sugar dehydratase Cj1319 [imported]%3B E%3D3e-15 pir:D70696%3B probable dtdp-glucose 4 - Mycobacterium tuberculosis%3B E%3D9e-15 COG: Cj1319%3B COG0451 Nucleoside-diphosphate-sugar epimerases%3B E%3D3e-16 aq_1069%3B COG1087 UDP-glucose 4-epimerase%3B E%3D1e-12 MTH1789%3B COG1088 dTDP-D-glucose 4%2C6-dehydratase%3B E%3D3e-11 PFAM: PF01073%3B 3-beta hydroxysteroid dehydrogenase%3B E%3D0.014 PF01370%3B NAD dependent epimerase/dehydratase%3B E%3D5.8e-16 gene gene3643 http://www.ncbi.nlm.nih.gov/gene/?term=RB6464 RB6466 RB6466 typA typA 3416688 3418610 + GTP-binding translation elongation factor-like protein PMID: 10567266 best DB hits: BLAST: pir:E75426%3B GTP-binding translation elongation factor homolog%3B E%3D1e-163 pir:H81111%3B GTP-binding protein TypA NMB1199 [imported] - Neisseria%3B E%3D1e-161 pir:D81906%3B probable GTP-binding protein NMA1370 [imported] -%3B E%3D1e-161 COG: DR1198%3B COG1217 Predicted membrane GTPase involved in stress%3B E%3D1e-164 typA%3B COG1217 Predicted membrane GTPase involved in stress response%3B E%3D1e-156 BS_ylaG%3B COG1217 Predicted membrane GTPase involved in stress%3B E%3D1e-155 PFAM: PF00009%3B Elongation factor Tu family%3B E%3D2.1e-91 PF00679%3B Elongation factor G C-terminus%3B E%3D3.9e-06 gene gene3644 http://www.ncbi.nlm.nih.gov/gene/?term=RB6466 RB6467 RB6467 RB6467 3418620 3419378 + phosphoglycerate mutase 1 PMID: 9537320 best DB hits: BLAST: pir:A70471%3B phosphoglycerate mutase 1 - Aquifex aeolicus -----%3B E%3D0.006 pir:G69831%3B phosphoglycerate mutase (glycolysis) homolog yhfR -%3B E%3D0.012 embl:CAA99510.1%3B (Z75191) ORF YOR283w [Saccharomyces%3B E%3D0.021 COG: aq_1990%3B COG0406 Phosphoglycerate%3B E%3D6e-04 BS_yhfR%3B COG0406 Phosphoglycerate mutase/fructose-2%2C6-bisphosphatase%3B E%3D0.001 YOR283w%3B COG0406 Phosphoglycerate%3B E%3D0.002 PFAM: PF00300%3B Phosphoglycerate mutase%3B E%3D3.9e-05 gene gene3645 http://www.ncbi.nlm.nih.gov/gene/?term=RB6467 RB6469 RB6469 RB6469 3419515 3420273 + sodium ABC transporter ATP-binding protein best DB hits: BLAST: pir:F82572%3B sodium ABC transporter ATP-binding protein XF2329%3B E%3D8e-44 swissprot:P46903%3B NATA_BACSU ATP-BINDING TRANSPORT PROTEIN NATA%3B E%3D2e-40 pir:B75459%3B sodium extrusion protein NatA - Deinococcus radiodurans%3B E%3D3e-39 COG: XF2329%3B COG1131 ABC-type multidrug transport system%2C ATPase%3B E%3D8e-45 ybhF%3B COG1131 ABC-type multidrug transport system%2C ATPase component%3B E%3D7e-32 PFAM: PF00448%3B SRP54-type protein%2C GTPase do%3B E%3D0.26 PF00005%3B ABC transporter%3B E%3D6.2e-51 gene gene3646 http://www.ncbi.nlm.nih.gov/gene/?term=RB6469 RB6470 RB6470 natB natB 3420270 3422375 + sodium extrusion protein NatB PMID: 10567266 best DB hits: BLAST: pir:A75459%3B sodium extrusion protein NatB - Deinococcus radiodurans%3B E%3D1e-09 swissprot:P46904%3B NATB_BACSU PROTEIN NATB ----- pir: B69666%3B E%3D3e-07 ddbj:BAA22237.1%3B (AB000617) NatB [Bacillus subtilis]%3B E%3D0.002 COG: DR0926%3B COG1668 ATP-dependent Na+ efflux pump membrane component%3B E%3D1e-10 ybhS%3B COG0842 Permease component of an ABC-transporter%3B E%3D0.003 PFAM: PF02517%3B CAAX amino terminal protease%3B E%3D1.8e-15 gene gene3647 http://www.ncbi.nlm.nih.gov/gene/?term=RB6470 RB6472 RB6472 murG murG 3422372 3423970 - undecaprenyl-phosphate N-acetylglucosaminyltransferase PMID: 9384377 best DB hits: BLAST: pir:A55856%3B llm protein - Staphylococcus aureus ----- ddbj:%3B E%3D7e-25 pir:B69721%3B teichoic acid linkage unit synthesis tagO - Bacillus%3B E%3D5e-24 ddbj:BAA82114.1%3B (AB022909) RgpG [Streptococcus mutans]%3B E%3D5e-23 COG: BS_tagO%3B COG0472 UDP-N-acetylmuramyl pentapeptide%3B E%3D4e-25 PFAM: PF00953%3B Glycosyl transferase%3B E%3D4e-32 gene gene3648 http://www.ncbi.nlm.nih.gov/gene/?term=RB6472 RB6475 RB6475 RB6475 3424095 3424313 + hypothetical protein gene gene3649 http://www.ncbi.nlm.nih.gov/gene/?term=RB6475 RB6477 RB6477 RB6477 3424543 3425652 + hypothetical protein gene gene3650 http://www.ncbi.nlm.nih.gov/gene/?term=RB6477 RB6480 RB6480 RB6480 3425693 3427075 + polysaccharide biosynthesis protein best DB hits: BLAST: pir:F70345%3B polysaccharide biosynthesis protein - Aquifex aeolicus%3B E%3D0.61 gene gene3651 http://www.ncbi.nlm.nih.gov/gene/?term=RB6480 RB6482 RB6482 rluD rluD 3427166 3427936 - ribosomal large subunit pseudouridine synthase D PMID: 10484179 PMID: 7493321 best DB hits: BLAST: ddbj:BAB06566.1%3B (AP001516) BH2847~~unknown conserved protein%3B E%3D9e-22 swissprot:O31613%3B YJBO_BACSU HYPOTHETICAL 31.5 KD PROTEIN IN%3B E%3D3e-19 swissprot:Q45480%3B YLYB_BACSU HYPOTHETICAL 33.7 KD PROTEIN IN%3B E%3D8e-19 COG: BH2847%3B COG0564 Pseudouridylate synthases%2C 23S RNA-specific%3B E%3D9e-23 PFAM: PF00849%3B RNA pseudouridylate synthase%3B E%3D1.7e-33 gene gene3652 http://www.ncbi.nlm.nih.gov/gene/?term=RB6482 RB6483 RB6483 recQ recQ 3427842 3429392 + ATP-dependent DNA helicase RecQ PMID: 8300539 PMID: 2164680 best DB hits: BLAST: gb:AAF33434.1%3B (AF233324) S. typhimurium DNA-dependent ATPase DNA%3B E%3D5e-61 swissprot:P15043%3B RECQ_ECOLI ATP-DEPENDENT DNA HELICASE RECQ%3B E%3D6e-61 gb:AAA24517.1%3B (M30198) recQ [Escherichia coli]%3B E%3D1e-60 COG: recQ%3B COG0514 Superfamily II DNA helicase%3B E%3D1e-61 YDR021w%3B COG0513 Superfamily II DNA and RNA helicases%3B E%3D8e-10 PFAM: PF00270%3B DEAD/DEAH box helicase%3B E%3D4.1e-34 PF00271%3B Helicase conserved C-terminal doma%3B E%3D5.1e-23 gene gene3653 http://www.ncbi.nlm.nih.gov/gene/?term=RB6483 RB6484 RB6484 folP folP 3429369 3430289 - dihydropteroate synthase PMID: 8905231 PMID: 8304179 best DB hits: BLAST: swissprot:P73248%3B DHPS_SYNY3 DIHYDROPTEROATE SYNTHASE (DHPS)%3B E%3D2e-51 pir:E83053%3B dihydropteroate synthase PA4750 [imported] - Pseudomonas%3B E%3D2e-49 pir:E72425%3B dihydropteroate synthase (EC 2.5.1.15) TM0040%3B E%3D2e-45 COG: slr2026%3B COG0294 Dihydropteroate synthase%3B E%3D2e-52 PFAM: PF00809%3B Dihydropteroate synthase%3B E%3D1.1e-113 gene gene3654 http://www.ncbi.nlm.nih.gov/gene/?term=RB6484 RB6485 RB6485 hemN hemN 3430286 3431686 - coproporphyrinogen III oxidase PMID: 10484179 PMID: 7768836 best DB hits: BLAST: ddbj:BAB05062.1%3B (AP001511) coproporphyrinogen III oxidase%3B E%3D1e-32 swissprot:O67886%3B HEMN_AQUAE OXYGEN-INDEPENDENT COPROPORPHYRINOGEN%3B E%3D2e-31 ddbj:BAB10571.1%3B (AB008265) oxygen-independent%3B E%3D6e-30 COG: BH1343%3B COG0635 Coproporphyrinogen III oxidase and related FeS%3B E%3D1e-33 PFAM: PF02473%3B Oxygen-independent Coproporphy%3B E%3D9.5e-08 gene gene3655 http://www.ncbi.nlm.nih.gov/gene/?term=RB6485 RB6486 RB6486 RB6486 3431741 3433108 - serine/threonine protein kinase related protein PMID: 9371463 best DB hits: BLAST: pir:H69064%3B serinethreonine protein kinase related protein -%3B E%3D3e-13 pir:C75264%3B probable serinethreonine protein kinase - Deinococcus%3B E%3D1e-08 swissprot:P42111%3B YXAL_BACSU HYPOTHETICAL 38.5 KDA PROTEIN IN%3B E%3D5e-07 COG: MTH1485%3B COG1520 Uncharacterized proteins of WD40-like repeat family%3B E%3D3e-14 DR2518_2%3B COG1520 Uncharacterized proteins of WD40-like repeat%3B E%3D5e-09 BS_yxaL%3B COG1520 Uncharacterized proteins of WD40-like repeat family%3B E%3D4e-08 PFAM: PF01011%3B PQQ enzyme repeat%3B E%3D0.0066 gene gene3656 http://www.ncbi.nlm.nih.gov/gene/?term=RB6486 RB6488 RB6488 RB6488 3433231 3434721 + 3-dehydroquinate dehydratase PMID: 8067995 best DB hits: BLAST: gb:AAF08579.1%3B AC011623_12 (AC011623) dehydroquinase%3B E%3D2e-74 pir:S46210%3B 3-dehydroquinate dehydratase (EC 4.2.1.10) shikimate%3B E%3D6e-67 pir:T06264%3B 3-dehydroquinate dehydratase (EC 4.2.1.10) shikimate%3B E%3D2e-65 COG: BS_aroD%3B COG0169 Shikimate 5-dehydrogenase%3B E%3D4e-39 PAB0299%3B COG0710 3-dehydroquinate dehydratase%3B E%3D6e-18 Ta0284%3B COG0169 Shikimate 5-dehydrogenase%3B E%3D4e-17 PFAM: PF01487%3B Type I 3-dehydroquinase%3B E%3D1.6e-40 PF01488%3B Shikimate / quinate 5-dehydrogen%3B E%3D8e-72 gene gene3657 http://www.ncbi.nlm.nih.gov/gene/?term=RB6488 RB6489 RB6489 RB6489 3434765 3435940 - D-threonine aldolase%2C metal-activated pyridoxal enzyme PMID: 9642221 best DB hits: BLAST: ddbj:BAA31547.1%3B (AB010956) metal-activated pyridoxal enzyme%3B E%3D1e-15 gb:AAG24954.1%3B AF242414_1 (AF242414) unknown [Paenibacillus%3B E%3D0.004 swissprot:P71683%3B YE14_MYCTU HYPOTHETICAL 14.3 KDA PROTEIN RV1414%3B E%3D0.65 PFAM: PF00842%3B Alanine racemase%3B E%3D0.0019 gene gene3658 http://www.ncbi.nlm.nih.gov/gene/?term=RB6489 RB6490 RB6490 degP degP 3435918 3437117 - protease Do PMID: 9507020 best DB hits: BLAST: ddbj:BAB02539.1%3B (AP000371) DegP protease precursor [Arabidopsis%3B E%3D5e-87 swissprot:O22609%3B DEGP_ARATH PROTEASE DO-LIKE PRECURSOR -----%3B E%3D9e-87 ddbj:BAA98101.1%3B (AB024023) contains similarity to serine%3B E%3D2e-71 COG: TP0773%3B COG0265 Trypsin-like serine proteases%2C typically%3B E%3D3e-48 CT823%3B COG0265 Trypsin-like serine proteases%2C typically periplasmic%2C%3B E%3D3e-37 Cj1228c%3B COG0265 Trypsin-like serine proteases%2C typically%3B E%3D2e-36 PFAM: PF00089%3B Trypsin%3B E%3D5.9e-26 PF00595%3B PDZ domain (Also known as DHR or GLG%3B E%3D0.0029 gene gene3659 http://www.ncbi.nlm.nih.gov/gene/?term=RB6490 RB6491 RB6491 RB6491 3437096 3438676 - RNA polymerase subunit sigma-54 PMID: 2203540 best DB hits: BLAST: gb:AAC82369.1%3B (AF061965) RNA polymerase subunit sigma-54%3B E%3D1e-121 gb:AAG58336.1%3B AE005548_7 (AE005548) RNA polymerase%2C sigma(54 or%3B E%3D7e-59 swissprot:P24255%3B RP54_ECOLI RNA POLYMERASE SIGMA-54 FACTOR%3B E%3D2e-58 COG: rpoN%3B COG1508 DNA-directed RNA polymerase specialized sigma%3B E%3D2e-59 PFAM: PF00356%3B Bacterial regulatory proteins%3B E%3D0.018 PF00309%3B Sigma-54 factors family%3B E%3D4e-155 gene gene3660 http://www.ncbi.nlm.nih.gov/gene/?term=RB6491 RB6492 RB6492 recR recR 3438696 3439295 - recombinant protein RecR PMID: 10567266 PMID: 2674903 best DB hits: BLAST: swissprot:Q9XAI4%3B RECR_STRCO RECOMBINATION PROTEIN RECR -----%3B E%3D3e-42 swissprot:Q9ZNA2%3B RECR_DEIRA RECOMBINATION PROTEIN RECR -----%3B E%3D4e-42 swissprot:O69520%3B RECR_MYCLE RECOMBINATION PROTEIN RECR -----%3B E%3D5e-42 COG: DR0198%3B COG0353 Recombinational DNA repair protein%3B E%3D4e-43 PFAM: PF00633%3B Helix-hairpin-helix motif.%3B E%3D0.21 PF02904%3B RuvA central domain II%3B E%3D0.049 PF02132%3B RecR protein%3B E%3D1.8e-14 gene gene3661 http://www.ncbi.nlm.nih.gov/gene/?term=RB6492 RB6493 RB6493 RB6493 3439292 3439678 - hypothetical protein PMID: 11823852 best DB hits: BLAST: swissprot:P17577%3B YBAB_ECOLI HYPOTHETICAL 12.0 KDA PROTEIN IN%3B E%3D0.12 swissprot:Q9ZCA0%3B Y866_RICPR HYPOTHETICAL PROTEIN RP866 -----%3B E%3D0.12 gb:AAK02289.1%3B (AE006055) unknown [Pasteurella multocida]%3B E%3D0.24 PFAM: PF02575%3B Uncharacterized BCR%2C YbaB family COG%3B E%3D2.7e-07 gene gene3662 http://www.ncbi.nlm.nih.gov/gene/?term=RB6493 RB6494 RB6494 dnaX dnaX 3439757 3441787 - DNA polymerase III gamma and tau subunits PMID: 10192928 PMID: 2186364 best DB hits: BLAST: ddbj:BAB03753.1%3B (AP001507) DNA polymerase III gamma and tau%3B E%3D9e-72 pir:S13786%3B DNA-directed DNA polymerase (EC 2.7.7.7) III chain dnaX%3B E%3D5e-66 swissprot:P09122%3B DP3X_BACSU DNA POLYMERASE III SUBUNIT GAMMATAU%3B E%3D5e-66 COG: BH0034%3B COG2812 DNA polymerase III%2C gamma/tau subunits%3B E%3D9e-73 PFAM: PF00693%3B Thymidine kinase from herpesviru%3B E%3D0.18 PF00004%3B ATPase associated with va%3B E%3D7.6e-14 gene gene3663 http://www.ncbi.nlm.nih.gov/gene/?term=RB6494 RB6495 RB6495 RB6495 3441842 3441961 - hypothetical protein gene gene3664 http://www.ncbi.nlm.nih.gov/gene/?term=RB6495 RB6496 RB6496 RB6496 3441948 3442121 + hypothetical protein gene gene3665 http://www.ncbi.nlm.nih.gov/gene/?term=RB6496 RB6497 RB6497 RB6497 3442109 3442804 + hypothetical protein PMID: 11823852 gene gene3666 http://www.ncbi.nlm.nih.gov/gene/?term=RB6497 RB6498 RB6498 RB6498 3442214 3442882 - hypothetical protein gene gene3667 http://www.ncbi.nlm.nih.gov/gene/?term=RB6498 RB6499 RB6499 rarD rarD 3442866 3443810 - RarD protein (chloramphenicol resistance) PMID: 10952301 best DB hits: BLAST: pir:D82351%3B rarD protein VC0195 [imported] - Vibrio cholerae (group%3B E%3D4e-38 embl:CAC08293.1%3B (AL392148) integral membrane protein%3B E%3D1e-36 gb:AAG59015.1%3B AE005613_8 (AE005613) orf%2C hypothetical protein%3B E%3D1e-35 COG: VC0195%3B COG2962 Predicted permeases%3B E%3D3e-39 PFAM: PF00892%3B Integral membrane protein DUF6%3B E%3D5.7e-12 gene gene3668 http://www.ncbi.nlm.nih.gov/gene/?term=RB6499 RB6500 RB6500 RB6500 3443803 3454800 - mycocerosate synthase PMID: 3880746 best DB hits: BLAST: pir:S72705%3B mycocerosate synthase (EC 2.3.1.111) - Mycobacterium%3B E%3D0.0 pir:H70819%3B probable polyketide synthase - Mycobacterium tuberculosis%3B E%3D0.0 gb:AAF62883.1%3B AF217189_6 (AF217189) epoD [Sorangium cellulosum]%3B E%3D1e-180 COG: PA2402_3%3B COG1020 Non-ribosomal peptide synthetase modules and related%3B E%3D4e-99 BS_ppsD_3%3B COG1020 Non-ribosomal peptide synthetase modules and%3B E%3D4e-92 PA2424_2%3B COG1020 Non-ribosomal peptide synthetase modules and related%3B E%3D1e-91 PFAM: PF00108%3B Thiolase%2C N-terminal domain%3B E%3D2.7e-06 PF00109%3B Beta-ketoacyl synthase%2C N-ter%3B E%3D7.7e-115 PF02801%3B Beta-ketoacyl synthase%2C C-ter%3B E%3D2.4e-81 gene gene3669 http://www.ncbi.nlm.nih.gov/gene/?term=RB6500 RB6502 RB6502 RB6502 3454804 3455943 - permease PMID: 9371463 best DB hits: BLAST: pir:F69192%3B conserved hypothetical protein MTH695 - Methanobacterium%3B E%3D2e-30 swissprot:Q58902%3B YF07_METJA HYPOTHETICAL PROTEIN MJ1507 -----%3B E%3D5e-10 gb:AAB89778.1%3B (AE001001) conserved hypothetical protein%3B E%3D2e-09 COG: MTH695%3B COG0577 Predicted permease%3B E%3D2e-31 PFAM: PF02687%3B Predicted permease%3B E%3D4.3e-26 gene gene3670 http://www.ncbi.nlm.nih.gov/gene/?term=RB6502 RB6503 RB6503 RB6503 3455940 3456092 - hypothetical protein gene gene3671 http://www.ncbi.nlm.nih.gov/gene/?term=RB6503 RB6504 RB6504 RB6504 3455959 3456120 - hypothetical protein gene gene3672 http://www.ncbi.nlm.nih.gov/gene/?term=RB6504 RB6505 RB6505 RB6505 3456110 3456265 - hypothetical protein gene gene3673 http://www.ncbi.nlm.nih.gov/gene/?term=RB6505 RB6506 RB6506 RB6506 3456133 3456243 - hypothetical protein gene gene3674 http://www.ncbi.nlm.nih.gov/gene/?term=RB6506 RB6507 RB6507 RB6507 3456252 3457370 + hypothetical protein gene gene3675 http://www.ncbi.nlm.nih.gov/gene/?term=RB6507 RB651 RB651 RB651 353262 353750 - hypothetical protein gene gene355 http://www.ncbi.nlm.nih.gov/gene/?term=RB651 RB6510 RB6510 RB6510 3457390 3458832 - hypothetical protein PMID: 12024217 gene gene3676 http://www.ncbi.nlm.nih.gov/gene/?term=RB6510 RB6511 RB6511 RB6511 3458838 3461846 - hypothetical protein gene gene3677 http://www.ncbi.nlm.nih.gov/gene/?term=RB6511 RB6515 RB6515 RB6515 3461858 3462055 - hypothetical protein gene gene3678 http://www.ncbi.nlm.nih.gov/gene/?term=RB6515 RB6517 RB6517 RB6517 3462062 3462598 + ECF family RNA polymerase sigma factor PMID: 8843436 best DB hits: BLAST: embl:CAC17654.1%3B (AL450450) ECF sigma factor%3B E%3D0.001 pir:G83282%3B probable sigma-70 factor%2C ECF subfamily PA2896%3B E%3D0.003 gb:AAA67931.1%3B (U16817) alternative sigma factor%3B E%3D0.014 COG: PA2896%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D3e-04 PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D3.9e-08 PF01603%3B Protein phosphatase 2A regulatory%3B E%3D0.46 gene gene3679 http://www.ncbi.nlm.nih.gov/gene/?term=RB6517 RB6518 RB6518 RB6518 3462626 3464260 + pentaxin domain-containing protein PMID: 11062057 best DB hits: BLAST: gb:AAG32160.1%3B AF206329_1 (AF206329) polydom protein [Mus musculus]%3B E%3D0.28 gene gene3680 http://www.ncbi.nlm.nih.gov/gene/?term=RB6518 RB6520 RB6520 RB6520 3464301 3465425 - glycosyl transferase best DB hits: BLAST: gb:AAD46732.1%3B AF078736_12 (AF078736) glycosyl%3B E%3D7e-20 gb:AAD50490.1%3B AF172324_8 (AF172324) WbnE [Escherichia coli]%3B E%3D9e-18 gb:AAF23993.1%3B (AF035937) WbpT [Pseudomonas aeruginosa]%3B E%3D1e-16 COG: DR1555%3B COG0438 Predicted glycosyltransferases%3B E%3D6e-14 PFAM: PF00534%3B Glycosyl transferases group 1%3B E%3D1.9e-35 gene gene3681 http://www.ncbi.nlm.nih.gov/gene/?term=RB6520 RB6523 RB6523 RB6523 3465422 3466675 - hypothetical protein gene gene3682 http://www.ncbi.nlm.nih.gov/gene/?term=RB6523 RB6524 RB6524 hpt hpt 3466672 3467205 - hypoxanthine-guanine phosphoribosyltransferase PMID: 10192928 best DB hits: BLAST: pir:T36331%3B probable hypoxanthine phosphoribosyltransferase -%3B E%3D6e-27 ddbj:BAB03803.1%3B (AP001507) hypoxanthine-guanine%3B E%3D8e-23 embl:CAB60853.1%3B (AL132877) predicted using Genefinder%3B E%3D1e-22 COG: BH0084%3B COG0634 Hypoxanthine-guanine phosphoribosyltransferase%3B E%3D7e-24 BU169%3B COG0462 Phosphoribosylpyrophosphate synthetase%3B E%3D0.002 APE2071%3B COG2236 Predicted phosphoribosyltransferases%3B E%3D0.007 PFAM: PF00156%3B Phosphoribosyl transferase domai%3B E%3D1.5e-15 gene gene3683 http://www.ncbi.nlm.nih.gov/gene/?term=RB6524 RB6525 RB6525 RB6525 3467212 3467454 - hypothetical protein gene gene3684 http://www.ncbi.nlm.nih.gov/gene/?term=RB6525 RB6528 RB6528 RB6528 3467440 3467784 + hypothetical protein gene gene3685 http://www.ncbi.nlm.nih.gov/gene/?term=RB6528 RB6530 RB6530 RB6530 3467807 3468520 - hypothetical protein PMID: 9278503 best DB hits: BLAST: swissprot:P29217%3B YCEH_ECOLI HYPOTHETICAL 24.2 KDA PROTEIN IN%3B E%3D2e-19 gb:AAG55813.1%3B AE005317_2 (AE005317) orf%2C hypothetical protein%3B E%3D2e-19 pir:D83213%3B conserved hypothetical protein PA3453 [imported] -%3B E%3D1e-18 COG: yceH%3B COG3132 Uncharacterized BCR%3B E%3D1e-20 PFAM: PF01213%3B CAP protein%3B E%3D0.44 PF02465%3B Flagellar hook-associated protein 2%3B E%3D0.41 PF01519%3B Protein of unknown function DUF16%3B E%3D0.89 gene gene3686 http://www.ncbi.nlm.nih.gov/gene/?term=RB6530 RB6533 RB6533 aas aas 3468775 3471075 + acyl-[ACP]--phospholipid O-acyltransferase PMID: 8300626 best DB hits: BLAST: pir:A81368%3B probable 2-acylglycerophosphoethanolamine acyltransferase%3B E%3D2e-89 swissprot:P31119%3B AAS_ECOLI AAS BIFUNCTIONAL PROTEIN [INCLUDES:%3B E%3D5e-59 gb:AAG57948.1%3B AE005512_7 (AE005512)%3B E%3D6e-59 COG: Cj0938c_3%3B COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid%3B E%3D6e-66 aas_2%3B COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases%3B E%3D6e-50 VNG1339C%3B COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid%3B E%3D2e-28 PFAM: PF01553%3B Acyltransferase%3B E%3D7.6e-22 PF00501%3B AMP-binding enzyme%3B E%3D2.4e-07 gene gene3687 http://www.ncbi.nlm.nih.gov/gene/?term=RB6533 RB6534 RB6534 RB6534 3471101 3471463 + hypothetical protein gene gene3688 http://www.ncbi.nlm.nih.gov/gene/?term=RB6534 RB6535 RB6535 RB6535 3471113 3471451 - hypothetical protein PMID: 12093901 gene gene3689 http://www.ncbi.nlm.nih.gov/gene/?term=RB6535 RB6536 RB6536 RB6536 3471483 3471704 - hypothetical protein gene gene3690 http://www.ncbi.nlm.nih.gov/gene/?term=RB6536 RB6537 RB6537 galM galM 3471736 3472890 - aldose 1-epimerase PMID: 3012466 best DB hits: BLAST: embl:CAB62739.1%3B (AL133423) aldose 1-epimerase%3B E%3D8e-92 pir:H72395%3B probable aldose 1-epimerase (EC 5.1.3.3) - Thermotoga%3B E%3D4e-85 swissprot:P05149%3B GALM_ACICA ALDOSE 1-EPIMERASE PRECURSOR%3B E%3D2e-80 COG: TM0282%3B COG2017 Galactose mutarotase and related enzymes%3B E%3D3e-86 PFAM: PF01263%3B Aldose 1-epimerase%3B E%3D3.1e-111 gene gene3691 http://www.ncbi.nlm.nih.gov/gene/?term=RB6537 RB6538 RB6538 RB6538 3472930 3474693 - symporter YidK uncharacterized member of the SSS superfamily of sodium-dependent solute transporters%3B unknown function gene gene3692 http://www.ncbi.nlm.nih.gov/gene/?term=RB6538 RB6539 RB6539 RB6539 3474598 3475722 + hypothetical protein gene gene3693 http://www.ncbi.nlm.nih.gov/gene/?term=RB6539 RB6542 RB6542 RB6542 3475795 3476964 + xylose operon regulatory protein PMID: 8041620 best DB hits: BLAST: swissprot:P37390%3B XYLR_ECOLI XYLOSE OPERON REGULATORY PROTEIN%3B E%3D9e-48 swissprot:P45043%3B XYLR_HAEIN XYLOSE OPERON REGULATORY PROTEIN%3B E%3D1e-43 ddbj:BAB03212.1%3B (AB046360) xylose operon regulatory%3B E%3D8e-38 COG: xylR_1%3B COG1609 Transcriptional regulators%3B E%3D3e-25 xylR_2%3B COG2207 AraC-type DNA-binding domain-containing proteins%3B E%3D7e-17 PA2320%3B COG1609 Transcriptional regulators%3B E%3D4e-08 PFAM: PF00165%3B Bacterial regulatory helix-turn-heli%3B E%3D2.1e-20 gene gene3694 http://www.ncbi.nlm.nih.gov/gene/?term=RB6542 RB6546 RB6546 RB6546 3476892 3477143 - hypothetical protein gene gene3695 http://www.ncbi.nlm.nih.gov/gene/?term=RB6546 RB6549 RB6549 RB6549 3477191 3478189 + hypothetical protein gene gene3696 http://www.ncbi.nlm.nih.gov/gene/?term=RB6549 RB655 RB655 RB655 353953 354993 - hypothetical protein PMID: 9634230 best DB hits: BLAST: swissprot:Q50653%3B YP68_MYCTU HYPOTHETICAL 38.0 KDA PROTEIN RV2568C%3B E%3D2e-35 gene gene356 http://www.ncbi.nlm.nih.gov/gene/?term=RB655 RB6551 RB6551 RB6551 3478197 3478328 + hypothetical protein gene gene3697 http://www.ncbi.nlm.nih.gov/gene/?term=RB6551 RB6552 RB6552 prfB prfB 3478346 3479359 - peptide chain release factor 2 PMID: 9537320 PMID: 3889910 best DB hits: BLAST: swissprot:O67695%3B RF2_AQUAE PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2)%3B E%3D3e-65 swissprot:P28367%3B RF2_BACSU PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2)%3B E%3D1e-64 pir:H82016%3B translation releasing factor RF-2 prfB NMA0224%3B E%3D3e-64 COG: aq_1840%3B COG1186 Protein chain release factor B%3B E%3D2e-66 PFAM: PF00213%3B ATP synthase delta (OSCP) subunit%3B E%3D0.085 PF00472%3B Peptidyl-tRNA hydrolase domain%3B E%3D3.4e-52 gene gene3698 http://www.ncbi.nlm.nih.gov/gene/?term=RB6552 RB6553 RB6553 RB6553 3479403 3479627 - hypothetical protein gene gene3699 http://www.ncbi.nlm.nih.gov/gene/?term=RB6553 RB6554 RB6554 trmU trmU 3479573 3480772 + tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase PMID: 10567266 best DB hits: BLAST: swissprot:Q9ZDM1%3B TRMU_RICPR PROBABLE TRNA%3B E%3D5e-62 pir:H75357%3B tRNA%3B E%3D2e-53 ddbj:BAB04980.1%3B (AP001511)%3B E%3D7e-49 COG: RP306%3B COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate)%3B E%3D5e-63 PFAM: PF00764%3B Arginosuccinate synthase%3B E%3D0.0016 PF02568%3B Thiamine biosynthesis protein%3B E%3D0.0039 gene gene3700 http://www.ncbi.nlm.nih.gov/gene/?term=RB6554 RB6556 RB6556 RB6556 3481050 3482471 - sulfatase best DB hits: PFAM: PF00884%3B Sulfatase%3B E%3D0.0047 gene gene3701 http://www.ncbi.nlm.nih.gov/gene/?term=RB6556 RB6557 RB6557 RB6557 3482475 3485186 - hypothetical protein gene gene3702 http://www.ncbi.nlm.nih.gov/gene/?term=RB6557 RB6559 RB6559 RB6559 3485306 3487090 - hypothetical protein gene gene3703 http://www.ncbi.nlm.nih.gov/gene/?term=RB6559 RB6562 RB6562 RB6562 3487063 3487173 - hypothetical protein gene gene3704 http://www.ncbi.nlm.nih.gov/gene/?term=RB6562 RB6563 RB6563 kdsA kdsA 3487154 3488014 - 3-deoxy-8-phosphooctulonate synthase catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis gene gene3705 http://www.ncbi.nlm.nih.gov/gene/?term=RB6563 RB6566 RB6566 RB6566 3488195 3489184 - protein BmrU PMID: 11214968 best DB hits: BLAST: swissprot:P39074%3B BMRU_BACSU BMRU PROTEIN ----- pir: F69595%3B E%3D0.057 pir:H70861%3B hypothetical protein Rv2252 - Mycobacterium tuberculosis%3B E%3D0.26 pir:H69995%3B hypothetical protein ytlR - Bacillus subtilis -----%3B E%3D0.35 gene gene3706 http://www.ncbi.nlm.nih.gov/gene/?term=RB6566 RB6567 RB6567 RB6567 3489185 3489298 - hypothetical protein gene gene3707 http://www.ncbi.nlm.nih.gov/gene/?term=RB6567 RB6569 RB6569 RB6569 3489300 3489527 + hypothetical protein gene gene3708 http://www.ncbi.nlm.nih.gov/gene/?term=RB6569 RB6571 RB6571 RB6571 3489550 3490014 + signal peptide gene gene3709 http://www.ncbi.nlm.nih.gov/gene/?term=RB6571 RB6572 RB6572 RB6572 3490092 3491447 - signal peptide gene gene3710 http://www.ncbi.nlm.nih.gov/gene/?term=RB6572 RB6574 RB6574 RB6574 3491444 3493615 - hypothetical protein gene gene3711 http://www.ncbi.nlm.nih.gov/gene/?term=RB6574 RB6576 RB6576 RB6576 3493521 3493706 - hypothetical protein gene gene3712 http://www.ncbi.nlm.nih.gov/gene/?term=RB6576 RB6577 RB6577 RB6577 3493739 3494956 + signal peptide gene gene3713 http://www.ncbi.nlm.nih.gov/gene/?term=RB6577 RB6578 RB6578 RB6578 3495022 3495957 - hypothetical protein best DB hits: PFAM: PF00036%3B EF hand%3B E%3D0.17 gene gene3714 http://www.ncbi.nlm.nih.gov/gene/?term=RB6578 RB658 RB658 RB658 354990 356228 - permease best DB hits: BLAST: embl:CAB83202.1%3B (AJ277117) membrane protein%3B E%3D1e-43 pir:H82825%3B transport protein XF0281 [imported] - Xylella fastidiosa%3B E%3D6e-29 gb:AAK04089.1%3B (AE006236) unknown [Pasteurella multocida]%3B E%3D2e-15 COG: XF0281%3B COG0628 Predicted permease%3B E%3D6e-30 PFAM: PF01594%3B Domain of unknown function DUF20%3B E%3D0.00041 gene gene357 http://www.ncbi.nlm.nih.gov/gene/?term=RB658 RB6581 RB6581 RB6581 3496255 3498015 + hypothetical protein gene gene3715 http://www.ncbi.nlm.nih.gov/gene/?term=RB6581 RB6583 RB6583 RB6583 3498012 3501002 + O-linked GlcNAc transferase PMID: 9083068 best DB hits: BLAST: gb:AAA62535.1%3B (U21320) contains TPR domain-like repeats%3B E%3D0.14 gb:AAB63465.1%3B (U77412) O-linked GlcNAc transferase%3B E%3D0.14 PFAM: PF02836%3B Glycosyl hydrolases family 2%2C%3B E%3D0.12 gene gene3716 http://www.ncbi.nlm.nih.gov/gene/?term=RB6583 RB6586 RB6586 RB6586 3501011 3501631 - hypothetical protein best DB hits: BLAST: pir:C75548%3B hypothetical protein - Deinococcus radiodurans (strain%3B E%3D0.005 gene gene3717 http://www.ncbi.nlm.nih.gov/gene/?term=RB6586 RB6587 RB6587 RB6587 3501595 3501747 - hypothetical protein gene gene3718 http://www.ncbi.nlm.nih.gov/gene/?term=RB6587 RB6588 RB6588 punA punA 3501744 3502583 - purine nucleoside phosphorylase catalyzes the formation of a purine and ribose phosphate from a purine nucleoside%3B in E. coli this enzyme functions in xanthosine degradation gene gene3719 http://www.ncbi.nlm.nih.gov/gene/?term=RB6588 RB659 RB659 RB659 356219 356416 + hypothetical protein gene gene358 http://www.ncbi.nlm.nih.gov/gene/?term=RB659 RB6590 RB6590 RB6590 3502687 3505149 + ATP-binding protein PMID: 9524235 best DB hits: BLAST: ddbj:BAA25303.1%3B (AB003477) hypothetical protein [Synechococcus%3B E%3D4e-04 pir:A75469%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D0.099 gb:AAK03519.1%3B (AE006180) unknown [Pasteurella multocida]%3B E%3D0.37 COG: DR0837%3B COG0433 Predicted ATPase%3B E%3D0.009 gene gene3720 http://www.ncbi.nlm.nih.gov/gene/?term=RB6590 RB6593 RB6593 RB6593 3505079 3505396 + hypothetical protein gene gene3721 http://www.ncbi.nlm.nih.gov/gene/?term=RB6593 RB6594 RB6594 RB6594 3505472 3506359 + hypothetical protein gene gene3723 http://www.ncbi.nlm.nih.gov/gene/?term=RB6594 RB6595 RB6595 RB6595 3505469 3506173 - signal peptide best DB hits: BLAST: gb:AAF58230.1%3B (AE003814) CG12864 gene product [Drosophila%3B E%3D0.58 gene gene3722 http://www.ncbi.nlm.nih.gov/gene/?term=RB6595 RB6596 RB6596 RB6596 3506375 3507067 - hypothetical protein gene gene3724 http://www.ncbi.nlm.nih.gov/gene/?term=RB6596 RB6599 RB6599 RB6599 3507362 3508939 + arylsulfatase PMID: 7910580 best DB hits: BLAST: embl:CAA36398.1%3B (X52150) arylsulphatase a [Homo sapiens]%3B E%3D1e-38 gb:AAB03341.1%3B (U62317) arylsulfatase A [Homo sapiens]%3B E%3D6e-38 pdb:1E2S%3B P Chain P%2C Crystal Structure Of An Arylsulfatase A%3B E%3D1e-37 COG: PA0183%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D2e-29 PFAM: PF00884%3B Sulfatase%3B E%3D6.7e-42 gene gene3725 http://www.ncbi.nlm.nih.gov/gene/?term=RB6599 RB66 RB66 RB66 26082 26336 + hypothetical protein gene gene37 http://www.ncbi.nlm.nih.gov/gene/?term=RB66 RB6603 RB6603 RB6603 3508951 3509955 + methanol dehydrogenase regulatory protein (MoxR) PMID: 8997703 best DB hits: BLAST: pir:C75037%3B methanol dehydrogenase regulatory protein (moxr-3)%3B E%3D9e-65 pir:E70792%3B probable regulatory protein - Mycobacterium tuberculosis%3B E%3D2e-64 pir:B71126%3B hypothetical protein PH0776 - Pyrococcus horikoshii%3B E%3D2e-63 COG: PAB0848%3B COG0714 MoxR-like ATPases%3B E%3D9e-66 PFAM: PF00004%3B ATPase associated with%3B E%3D6.4e-06 PF02223%3B Thymidylate kinase%3B E%3D0.36 PF01078%3B Magnesium chelatase%2C subunit%3B E%3D4.3e-05 gene gene3726 http://www.ncbi.nlm.nih.gov/gene/?term=RB6603 RB6605 RB6605 RB6605 3510029 3510748 + phospholipase C-beta-2 PMID: 1644792 best DB hits: BLAST: gb:AAA36453.1%3B (M95678) phospholipase C-beta-2 [Homo sapiens]%3B E%3D2e-04 gb:AAG51636.1%3B AC018908_2 (AC018908) unknown protein%3B 69131-60853%3B E%3D0.001 pir:F71318%3B conserved hypothetical protein TP0494 - syphilis%3B E%3D0.001 COG: TP0494%3B COG1579 Zn-ribbon protein%2C possibly nucleic acid-binding%3B E%3D1e-04 NMB1472%3B COG0542 ATPases with chaperone activity%2C ATP-binding domain%3B E%3D0.008 PFAM: PF02591%3B Uncharacterized ACR%2C COG1579%3B E%3D0.88 gene gene3727 http://www.ncbi.nlm.nih.gov/gene/?term=RB6605 RB6607 RB6607 RB6607 3510745 3511395 + phosphatase/kinase PMID: 9784136 best DB hits: BLAST: pir:D75341%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D3e-13 swissprot:O34932%3B YTAG_BACSU HYPOTHETICAL 22.0 KD PROTEIN IN%3B E%3D2e-12 pir:B71509%3B probable phosphatasekinase - Chlamydia trachomatis%3B E%3D5e-11 COG: DR1892%3B COG0237 Predicted nucleotide kinase%3B E%3D3e-14 PFAM: PF01583%3B Adenylylsulfate kinase%3B E%3D0.81 PF00485%3B Phosphoribulokinase / Uridine%3B E%3D0.0071 PF01121%3B Uncharacterized protein famil%3B E%3D1.1e-19 gene gene3728 http://www.ncbi.nlm.nih.gov/gene/?term=RB6607 RB6609 RB6609 RB6609 3511456 3511593 + hypothetical protein gene gene3729 http://www.ncbi.nlm.nih.gov/gene/?term=RB6609 RB661 RB661 RB661 356466 357368 - hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:G83411%3B hypothetical protein PA1872 [imported] - Pseudomonas%3B E%3D3e-46 PFAM: PF00560%3B Leucine Rich Repeat%3B E%3D0.12 gene gene359 http://www.ncbi.nlm.nih.gov/gene/?term=RB661 RB6610 RB6610 RB6610 3511694 3515401 + hypothetical protein best DB hits: PFAM: PF00639%3B PPIC-type PPIASE domain.%3B E%3D0.81 gene gene3730 http://www.ncbi.nlm.nih.gov/gene/?term=RB6610 RB6615 RB6615 RB6615 3515430 3516122 + secreted glycosyl hydrolase PMID: 8843436 best DB hits: BLAST: embl:CAB94634.1%3B (AL359215) secreted glycosyl hydrolase.%3B E%3D1e-12 pir:T34929%3B hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces%3B E%3D3e-11 pir:T35028%3B probable glycosyl hydrolase - Streptomyces coelicolor%3B E%3D0.054 gene gene3731 http://www.ncbi.nlm.nih.gov/gene/?term=RB6615 RB6616 RB6616 purD purD 3516064 3517428 + phosphoribosylamine-glycine ligase PMID: 8299947 best DB hits: BLAST: pir:T46882%3B phosphoribosylamine--glycine ligase (EC 6.3.4.13)%3B E%3D1e-108 pir:I67805%3B purine synthesis multifunctional protein - mouse -----%3B E%3D1e-108 gb:AAC53250.1%3B (U20892) glycinamide ribonucleotide synthetase%3B E%3D1e-107 COG: BH0634%3B COG0151 Phosphoribosylamine-glycine ligase%3B E%3D1e-108 PFAM: PF02844%3B Phosphoribosylglycinamide syn%3B E%3D6.3e-55 PF02842%3B Phosphoribosylglycinamide syn%3B E%3D2.5e-30 PF01837%3B Domain of unknown function DU%3B E%3D0.23 gene gene3732 http://www.ncbi.nlm.nih.gov/gene/?term=RB6616 RB6619 RB6619 RB6619 3517503 3518291 - hypothetical protein gene gene3733 http://www.ncbi.nlm.nih.gov/gene/?term=RB6619 RB6620 RB6620 ppiD ppiD 3518213 3519400 - peptidyl-prolyl cis-trans isomerase PMID: 10710307 PMID: 9670013 best DB hits: BLAST: gb:AAK04063.1%3B (AE006234) unknown [Pasteurella multocida]%3B E%3D2e-06 pir:A81794%3B probable rotamase NMA2206 [imported] - Neisseria%3B E%3D7e-05 pir:B81216%3B peptidyl-prolyl cis-trans isomerase NMB0281 [imported] -%3B E%3D1e-04 COG: NMB0281%3B COG0760 Parvulin-like peptidyl-prolyl isomerase%3B E%3D1e-05 PFAM: PF00639%3B PPIC-type PPIASE domain.%3B E%3D0.0032 gene gene3734 http://www.ncbi.nlm.nih.gov/gene/?term=RB6620 RB6623 RB6623 nadC nadC 3519584 3520531 + nicotinate-mononucleotide pyrophosphorylase PMID: 10910347 best DB hits: BLAST: pir:B82621%3B nicotinate-mononucleotide pyrophosphorylase XF1925%3B E%3D4e-45 swissprot:P77938%3B NADC_RHORU PROBABLE NICOTINATE-NUCLEOTIDE%3B E%3D4e-43 gb:AAG47789.1%3B AF311738_5 (AF311738) NadC [Mesorhizobium loti]%3B E%3D4e-39 COG: XF1925%3B COG0157 Nicotinate-nucleotide pyrophosphorylase%3B E%3D4e-46 PFAM: PF00364%3B Biotin-requiring enzyme%3B E%3D0.5 PF02749%3B Quinolinate phosphoribosyl tran%3B E%3D8.9e-16 PF01729%3B Quinolinate phosphoribosyl tran%3B E%3D1.1e-32 gene gene3735 http://www.ncbi.nlm.nih.gov/gene/?term=RB6623 RB6624 RB6624 RB6624 3520589 3522100 + capsular polysaccharide biosynthesis glycosyltransferase PMID: 10952301 best DB hits: BLAST: pir:D82262%3B probable capsular polysaccharide biosynthesis%3B E%3D3e-87 gb:AAG57107.1%3B AE005430_7 (AE005430) colanic acid%3B E%3D4e-82 swissprot:P71241%3B WCAJ_ECOLI COLANIC BIOSYNTHESIS%3B E%3D5e-82 COG: VC0934%3B COG2148 Sugar transferases involved in lipopolysaccharide%3B E%3D3e-88 PFAM: PF02397%3B Bacterial sugar transferase%3B E%3D0.25 gene gene3736 http://www.ncbi.nlm.nih.gov/gene/?term=RB6624 RB6627 RB6627 RB6627 3522169 3522699 + hypothetical protein gene gene3737 http://www.ncbi.nlm.nih.gov/gene/?term=RB6627 RB6628 RB6628 RB6628 3522700 3522840 + hypothetical protein gene gene3738 http://www.ncbi.nlm.nih.gov/gene/?term=RB6628 RB6629 RB6629 RB6629 3522859 3524985 + hypothetical protein PMID: 10360571 best DB hits: BLAST: pir:F72424%3B hypothetical protein - Thermotoga maritima (strain MSB8)%3B E%3D0.28 gene gene3739 http://www.ncbi.nlm.nih.gov/gene/?term=RB6629 RB663 RB663 RB663 357369 357608 - hypothetical protein gene gene360 http://www.ncbi.nlm.nih.gov/gene/?term=RB663 RB6632 RB6632 RB6632 3524963 3525130 + hypothetical protein gene gene3740 http://www.ncbi.nlm.nih.gov/gene/?term=RB6632 RB6633 RB6633 RB6633 3525143 3525742 + hypothetical protein gene gene3741 http://www.ncbi.nlm.nih.gov/gene/?term=RB6633 RB6634 RB6634 RB6634 3525785 3526882 + signal peptide best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene3742 http://www.ncbi.nlm.nih.gov/gene/?term=RB6634 RB6636 RB6636 RB6636 3527005 3528306 + transposase best DB hits: BLAST: gb:AAD45539.1%3B U70376_1 (U70376) InsA [Streptomyces netropsis]%3B E%3D5e-33 gb:AAG60893.1%3B AF322013_12 (AF322013) ID460 [Bradyrhizobium%3B E%3D8e-33 ddbj:BAA19966.1%3B (D63923) transposase [Acetobacter pasteurianus]%3B E%3D1e-26 gene gene3743 http://www.ncbi.nlm.nih.gov/gene/?term=RB6636 RB6637 RB6637 RB6637 3528317 3528469 + hypothetical protein gene gene3744 http://www.ncbi.nlm.nih.gov/gene/?term=RB6637 RB6638 RB6638 RB6638 3528359 3528514 - hypothetical protein gene gene3745 http://www.ncbi.nlm.nih.gov/gene/?term=RB6638 RB6639 RB6639 RB6639 3528517 3529980 - hypothetical protein gene gene3746 http://www.ncbi.nlm.nih.gov/gene/?term=RB6639 RB6643 RB6643 RB6643 3529970 3530587 - RNA polymerase ECF-type sigma factor PMID: 7961421 best DB hits: BLAST: gb:AAF01335.1%3B AF190580_1 (AF190580) alternate sigma factor AlgT%3B E%3D2e-09 pir:A69872%3B RNA polymerase ECF-type sigma factor homolog ylaC -%3B E%3D2e-09 swissprot:Q06198%3B RPSH_PSEAE RNA POLYMERASE SIGMA-H FACTOR%3B E%3D2e-09 COG: BS_ylaC%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D2e-10 PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D5.5e-14 gene gene3747 http://www.ncbi.nlm.nih.gov/gene/?term=RB6643 RB6644 RB6644 RB6644 3530698 3534084 - serine/threonine-protein kinase PMID: 10684935 best DB hits: BLAST: gb:AAF73522.1%3B (AE002272) serinethreonine-protein kinase%3B E%3D6e-05 pir:E71486%3B probable st protein kinase - Chlamydia trachomatis%3B E%3D3e-04 swissprot:P54737%3B PKN5_MYXXA SERINETHREONINE-PROTEIN KINASE PKN5%3B E%3D0.001 COG: CT673%3B COG0515 Serine/threonine protein kinases%3B E%3D3e-05 PFAM: PF00069%3B Protein kinase domain%3B E%3D0.21 gene gene3748 http://www.ncbi.nlm.nih.gov/gene/?term=RB6644 RB6653 RB6653 RB6653 3534121 3534261 - hypothetical protein gene gene3749 http://www.ncbi.nlm.nih.gov/gene/?term=RB6653 RB6654 RB6654 glgA glgA 3534225 3535748 + glycogen synthase PMID: 10360571 PMID: 3097003 best DB hits: BLAST: pir:H72321%3B glycogen synthase - Thermotoga maritima (strain MSB8)%3B E%3D6e-79 gb:AAK04797.1%3B AE006303_3 (AE006303) glycogen synthase (EC%3B E%3D1e-77 swissprot:O08328%3B GLGA_BACST GLYCOGEN SYNTHASE (STARCH [BACTERIAL%3B E%3D2e-76 COG: TM0895%3B COG0297 Glycogen synthase%3B E%3D6e-80 BH1415_2%3B COG0438 Predicted glycosyltransferases%3B E%3D6e-10 PH0069%3B COG0297 Glycogen synthase%3B E%3D7e-09 PFAM: PF00534%3B Glycosyl transferases group 1%3B E%3D8.9e-10 gene gene3750 http://www.ncbi.nlm.nih.gov/gene/?term=RB6654 RB6655 RB6655 RB6655 3535719 3535829 - hypothetical protein gene gene3751 http://www.ncbi.nlm.nih.gov/gene/?term=RB6655 RB6656 RB6656 galT galT 3535887 3537278 + galactose-1-phosphate uridylyltransferase PMID: 10360571 best DB hits: BLAST: pir:A72322%3B hypothetical protein TM0896 - Thermotoga maritima%3B E%3D3e-47 ddbj:BAB09478.1%3B (AB012246) galactose-1-phosphate uridyl%3B E%3D1e-36 gb:AAF64398.1%3B AF148553_2 (AF148553) adenylylsulfate:phosphate%3B E%3D1e-35 COG: TM0896%3B COG1085 Galactose-1-phosphate uridylyltransferase%3B E%3D3e-48 gene gene3752 http://www.ncbi.nlm.nih.gov/gene/?term=RB6656 RB6658 RB6658 RB6658 3537387 3538430 + signal peptide gene gene3753 http://www.ncbi.nlm.nih.gov/gene/?term=RB6658 RB666 RB666 RB666 357735 357956 + hypothetical protein PMID: 11481431 gene gene361 http://www.ncbi.nlm.nih.gov/gene/?term=RB666 RB6661 RB6661 RB6661 3538486 3538752 - hypothetical protein gene gene3754 http://www.ncbi.nlm.nih.gov/gene/?term=RB6661 RB6663 RB6663 RB6663 3538870 3540255 - hypothetical protein PMID: 10360571 best DB hits: BLAST: pir:G72299%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D0.001 gb:AAB88948.1%3B (AE000945) conserved hypothetical transmembrane%3B E%3D0.21 COG: TM1060%3B COG0477 Permeases of the major facilitator superfamily%3B E%3D1e-04 gene gene3755 http://www.ncbi.nlm.nih.gov/gene/?term=RB6663 RB6666 RB6666 RB6666 3540415 3541137 + hypothetical protein gene gene3756 http://www.ncbi.nlm.nih.gov/gene/?term=RB6666 RB6667 RB6667 RB6667 3541134 3541280 + hypothetical protein gene gene3757 http://www.ncbi.nlm.nih.gov/gene/?term=RB6667 RB6668 RB6668 RB6668 3541244 3543304 + hypothetical protein PMID: 8843436 best DB hits: BLAST: pir:T36106%3B hypothetical protein SCE15.03c - Streptomyces coelicolor%3B E%3D3e-87 pir:A83179%3B conserved hypothetical protein PA3729 [imported] -%3B E%3D4e-73 gb:AAG58185.1%3B AE005534_7 (AE005534) membrane protein%3B E%3D2e-28 COG: PA3729%3B COG2268 Uncharacterized BCR%3B E%3D4e-74 gene gene3758 http://www.ncbi.nlm.nih.gov/gene/?term=RB6668 RB6669 RB6669 RB6669 3543307 3548661 + hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:D83181%3B hypothetical protein PA3728 [imported] - Pseudomonas%3B E%3D0.0 pir:T36105%3B probable large glycinealanine rich protein - Streptomyces%3B E%3D1e-165 pir:D75436%3B ATP-dependent Clp proteinase%2C ATP-binding subunit ClpC -%3B E%3D0.19 PFAM: PF00004%3B ATPase associated with%3B E%3D0.00026 gene gene3759 http://www.ncbi.nlm.nih.gov/gene/?term=RB6669 RB6670 RB6670 RB6670 3548700 3549818 + translation factor best DB hits: BLAST: pir:G82243%3B conserved hypothetical protein VC1079 [imported] -%3B E%3D1e-42 pir:F75007%3B sua5 related protein PAB1302 - Pyrococcus abyssi (strain%3B E%3D5e-41 embl:CAB57638.1%3B (Y18930) hypothetical protein [Sulfolobus%3B E%3D2e-39 COG: VC1079%3B COG0009 translation factor (SUA5)%3B E%3D1e-43 PFAM: PF01300%3B SUA5/yciO/yrdC family%3B E%3D2.7e-50 gene gene3760 http://www.ncbi.nlm.nih.gov/gene/?term=RB6670 RB6671 RB6671 RB6671 3549836 3550681 - hypothetical protein PMID: 98151343 best DB hits: BLAST: gb:AAF55179.1%3B (AE003708) CG5038 gene product [Drosophila%3B E%3D4e-10 gb:AAF26789.1%3B AC016829_13 (AC016829) O-linked GlcNAc%3B E%3D4e-09 ddbj:BAB21885.1%3B (AB055261) hypothetical protein [Macaca%3B E%3D2e-08 COG: MTH72%3B COG0457 TPR-repeat-containing proteins%3B E%3D4e-07 PFAM: PF00515%3B TPR Domain%3B E%3D1.6e-05 gene gene3761 http://www.ncbi.nlm.nih.gov/gene/?term=RB6671 RB6676 RB6676 RB6676 3550668 3550829 - hypothetical protein gene gene3762 http://www.ncbi.nlm.nih.gov/gene/?term=RB6676 RB6677 RB6677 RB6677 3550883 3551071 + hypothetical protein gene gene3763 http://www.ncbi.nlm.nih.gov/gene/?term=RB6677 RB6678 RB6678 RB6678 3551127 3551480 + hypothetical protein gene gene3764 http://www.ncbi.nlm.nih.gov/gene/?term=RB6678 RB668 RB668 pldB pldB 357993 358883 + lysophospholipase best DB hits: BLAST: gb:AAB89497.1%3B (AE000982) lysophospholipase [Archaeoglobus%3B E%3D6e-28 gb:AAK05664.1%3B AE006387_7 (AE006387) conserved hypothetical%3B E%3D4e-23 pir:F72264%3B hypothetical protein TM1350 - Thermotoga maritima%3B E%3D5e-21 COG: AF1753%3B COG2267 Lysophospholipase%3B E%3D6e-29 DR1351%3B COG0596 Predicted hydrolases or acyltransferases (alpha/beta%3B E%3D2e-04 DR2522%3B COG2267 Lysophospholipase%3B E%3D4e-04 PFAM: PF00561%3B alpha/beta hydrolase fold%3B E%3D3.2e-07 gene gene362 http://www.ncbi.nlm.nih.gov/gene/?term=RB668 RB6680 RB6680 RB6680 3551491 3551718 + hypothetical protein PMID: 10731132 best DB hits: BLAST: gb:AAF57913.1%3B (AE003804) CG9642 gene product [Drosophila%3B E%3D0.032 gene gene3765 http://www.ncbi.nlm.nih.gov/gene/?term=RB6680 RB6681 RB6681 RB6681 3551775 3552194 + hypothetical protein gene gene3766 http://www.ncbi.nlm.nih.gov/gene/?term=RB6681 RB6683 RB6683 gltA gltA 3552246 3553733 - citrate synthase PMID: 2337600 PMID: 6380576 best DB hits: BLAST: gb:AAF04133.1%3B AF191033_1 (AF191033) citrate synthase%3B E%3D1e-152 embl:CAB66275.1%3B (AL136519) citrate synthase. [Streptomyces%3B E%3D1e-149 swissprot:Q10530%3B CISY_MYCTU CITRATE SYNTHASE 1 ----- pir:%3B E%3D1e-145 COG: Rv0896%3B COG0372 Citrate synthase%3B E%3D1e-146 PFAM: PF00285%3B Citrate synthase%3B E%3D1e-208 gene gene3767 http://www.ncbi.nlm.nih.gov/gene/?term=RB6683 RB6684 RB6684 RB6684 3553717 3554034 - hypothetical protein gene gene3768 http://www.ncbi.nlm.nih.gov/gene/?term=RB6684 RB6685 RB6685 RB6685 3554047 3554265 - hypothetical protein gene gene3769 http://www.ncbi.nlm.nih.gov/gene/?term=RB6685 RB6686 RB6686 RB6686 3554230 3555036 + two-component response regulator PMID: 10484179 PMID: 9878437 best DB hits: BLAST: ddbj:BAB06876.1%3B (AP001517) two-component response regulator%3B E%3D9e-39 gb:AAG43239.1%3B AF123314_2 (AF123314) response regulator%3B E%3D5e-38 gb:AAG09797.1%3B AF258346_2 (AF258346) response regulator RegX3%3B E%3D7e-38 COG: BH3157%3B COG0745 Response regulators consisting of a CheY-like%3B E%3D9e-40 phoB%3B COG0745 Response regulators consisting of a CheY-like receiver%3B E%3D5e-31 BH1580%3B COG0745 Response regulators consisting of a CheY-like%3B E%3D1e-30 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D8.3e-31 PF00486%3B Transcriptional regulatory prote%3B E%3D2.9e-24 gene gene3770 http://www.ncbi.nlm.nih.gov/gene/?term=RB6686 RB6688 RB6688 sodA sodA 3555061 3555747 + Mn family superoxide dismutase PMID: 1089067 PMID: 3520487 best DB hits: BLAST: pir:B75415%3B superoxide dismutase (EC 1.15.1.1) (Mn) DR1279%3B E%3D7e-82 ddbj:BAB05128.1%3B (AP001511) superoxide dismutase [Bacillus%3B E%3D3e-75 embl:CAA05291.1%3B (AJ002279) manganese superoxide dismutase%3B E%3D9e-75 COG: DR1279%3B COG0605 Superoxide dismutase%3B E%3D6e-83 PFAM: PF00081%3B Iron/manganese superoxide dismutases%3B E%3D2.4e-53 PF02777%3B Iron/manganese superoxide dismutases%3B E%3D5.3e-69 gene gene3771 http://www.ncbi.nlm.nih.gov/gene/?term=RB6688 RB6690 RB6690 fba fba 3555896 3556918 + fructose-1%2C6-bisphosphate aldolase class II aldolase%3B catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle%2C glycolysis and gluconeogenesis gene gene3772 http://www.ncbi.nlm.nih.gov/gene/?term=RB6690 RB6691 RB6691 RB6691 3556962 3557465 + hypothetical protein gene gene3773 http://www.ncbi.nlm.nih.gov/gene/?term=RB6691 RB6693 RB6693 RB6693 3557535 3557960 + hypothetical protein gene gene3774 http://www.ncbi.nlm.nih.gov/gene/?term=RB6693 RB6696 RB6696 RB6696 3557988 3558311 - hypothetical protein gene gene3775 http://www.ncbi.nlm.nih.gov/gene/?term=RB6696 RB6697 RB6697 RB6697 3558301 3558933 - hypothetical protein best DB hits: PFAM: PF01909%3B Nucleotidyltransferase domain%3B E%3D0.00053 gene gene3776 http://www.ncbi.nlm.nih.gov/gene/?term=RB6697 RB6698 RB6698 RB6698 3558935 3559774 - hypothetical protein PMID: 10413667 best DB hits: BLAST: gb:AAD24810.1%3B (AF003958) unknown [Acinetobacter sp. SUN]%3B E%3D0.004 swissprot:P05530%3B MCBG_ECOLI MCBG PROTEIN ----- pir: S00837%3B E%3D0.17 pir:I50531%3B transmembrane transporter - electric ray (Discopyge%3B E%3D0.26 PFAM: PF00805%3B Pentapeptide repeats (8 copies)%3B E%3D3.4e-05 gene gene3777 http://www.ncbi.nlm.nih.gov/gene/?term=RB6698 RB6699 RB6699 RB6699 3559781 3559924 + hypothetical protein gene gene3778 http://www.ncbi.nlm.nih.gov/gene/?term=RB6699 RB670 RB670 RB670 358905 359315 - hypothetical protein gene gene363 http://www.ncbi.nlm.nih.gov/gene/?term=RB670 RB6701 RB6701 RB6701 3559944 3560207 + hypothetical protein gene gene3779 http://www.ncbi.nlm.nih.gov/gene/?term=RB6701 RB6702 RB6702 RB6702 3560183 3560371 - hypothetical protein gene gene3780 http://www.ncbi.nlm.nih.gov/gene/?term=RB6702 RB6703 RB6703 RB6703 3560295 3560822 - hypothetical protein gene gene3781 http://www.ncbi.nlm.nih.gov/gene/?term=RB6703 RB6706 RB6706 RB6706 3560829 3560942 - hypothetical protein gene gene3782 http://www.ncbi.nlm.nih.gov/gene/?term=RB6706 RB6707 RB6707 RB6707 3561015 3562985 - transposase PMID: 6268937 best DB hits: BLAST: swissprot:P03835%3B YI41_ECOLI INSERTION ELEMENT IS4 HYPOTHETICAL%3B E%3D0.003 gb:AAC72261.1%3B (U91581) transposase [Lactococcus lactis%3B E%3D0.010 gb:AAF27554.1%3B (AF179847) transposase [Lactococcus%3B E%3D0.010 COG: yi41%3B COG3385 Predicted transposase%3B E%3D2e-04 PFAM: PF01609%3B Transposase (IS4 family)%3B E%3D0.024 gene gene3783 http://www.ncbi.nlm.nih.gov/gene/?term=RB6707 RB6708 RB6708 RB6708 3562975 3563853 - transposase PMID: 7496528 best DB hits: BLAST: gb:AAA88919.1%3B (U13013) ORFB [Leptospira interrogans]%3B E%3D5e-47 gb:AAA88916.1%3B (U13012) ORFB [Leptospira interrogans]%3B E%3D2e-46 gb:AAC05649.1%3B (AF038931) probable transposase-related protein%3B E%3D8e-46 COG: tra5_g4%3B COG2801 transposase%3B E%3D2e-35 PFAM: PF00665%3B Integrase core domain%3B E%3D4.8e-40 gene gene3784 http://www.ncbi.nlm.nih.gov/gene/?term=RB6708 RB6709 RB6709 RB6709 3563856 3564146 - transposase A PMID: 2824781 best DB hits: BLAST: gb:AAG58100.1%3B AE005527_3 (AE005527) unknown protein encoded by%3B E%3D0.002 gb:AAG53987.1%3B AF327445_1 (AF327445) transposase A%3B E%3D0.003 gb:AAF28119.1%3B AF153317_15 (AF153317) InsA [Shigella%3B E%3D0.007 COG: PA1937%3B COG2963 Transposase%3B E%3D0.004 PFAM: PF01381%3B Helix-turn-helix%3B E%3D0.53 PF01527%3B Transposase%3B E%3D6.1e-18 gene gene3785 http://www.ncbi.nlm.nih.gov/gene/?term=RB6709 RB671 RB671 RB671 359218 359586 + hypothetical protein gene gene364 http://www.ncbi.nlm.nih.gov/gene/?term=RB671 RB6711 RB6711 RB6711 3564510 3564737 - hypothetical protein gene gene3786 http://www.ncbi.nlm.nih.gov/gene/?term=RB6711 RB6712 RB6712 RB6712 3564597 3564908 + hypothetical protein gene gene3787 http://www.ncbi.nlm.nih.gov/gene/?term=RB6712 RB6713 RB6713 RB6713 3564826 3565773 - hypothetical protein gene gene3788 http://www.ncbi.nlm.nih.gov/gene/?term=RB6713 RB6716 RB6716 RB6716 3565803 3567209 - transport protein- arsenite transport PMID: 1535622 best DB hits: BLAST: pir:F71205%3B hypothetical protein PH1912 - Pyrococcus horikoshii%3B E%3D3e-37 pir:F72315%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D4e-37 pir:C75019%3B transport protein PAB1107 - Pyrococcus abyssi (strain%3B E%3D3e-36 COG: PH1912%3B COG1055 Na+/H+ antiporter NhaD and related arsenite%3B E%3D3e-38 arsB%3B COG1055 Na+/H+ antiporter NhaD and related arsenite permeases%3B E%3D6e-14 BH2999%3B COG1055 Na+/H+ antiporter NhaD and related arsenite%3B E%3D4e-13 gene gene3789 http://www.ncbi.nlm.nih.gov/gene/?term=RB6716 RB6719 RB6719 RB6719 3567413 3567772 - hypothetical protein gene gene3790 http://www.ncbi.nlm.nih.gov/gene/?term=RB6719 RB6720 RB6720 RB6720 3567752 3567970 + hypothetical protein gene gene3791 http://www.ncbi.nlm.nih.gov/gene/?term=RB6720 RB6722 RB6722 RB6722 3568026 3569195 - signal peptide best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene3792 http://www.ncbi.nlm.nih.gov/gene/?term=RB6722 RB6724 RB6724 RB6724 3569189 3569584 + hypothetical protein gene gene3793 http://www.ncbi.nlm.nih.gov/gene/?term=RB6724 RB6725 RB6725 RB6725 3569667 3570638 - lipase PMID: 9464382 best DB hits: BLAST: gb:AAC38151.1%3B (AF034088) lipase [Pseudomonas sp. B11-1]%3B E%3D4e-34 ddbj:BAA82510.1%3B (AB029896) esterase HDE [petroleum-degrading%3B E%3D3e-33 gb:AAB89533.1%3B (AE000985) carboxylesterase (estA) [Archaeoglobus%3B E%3D2e-30 COG: AF1716%3B COG0657 Acetyl esterase%3B E%3D2e-31 PFAM: PF00135%3B Carboxylesterase%3B E%3D0.75 PF00326%3B Prolyl oligopeptidase%3B E%3D0.72 PF00561%3B alpha/beta hydrolase fold%3B E%3D0.27 gene gene3794 http://www.ncbi.nlm.nih.gov/gene/?term=RB6725 RB6728 RB6728 RB6728 3570581 3570922 + hypothetical protein gene gene3795 http://www.ncbi.nlm.nih.gov/gene/?term=RB6728 RB6729 RB6729 deoC deoC 3570858 3571640 + 2-deoxyribose-5-phosphate aldolase catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate gene gene3796 http://www.ncbi.nlm.nih.gov/gene/?term=RB6729 RB6730 RB6730 RB6730 3571668 3573215 - hypothetical protein gene gene3797 http://www.ncbi.nlm.nih.gov/gene/?term=RB6730 RB6731 RB6731 RB6731 3573171 3573812 + hypothetical protein gene gene3798 http://www.ncbi.nlm.nih.gov/gene/?term=RB6731 RB6732 RB6732 tolB tolB 3573460 3576996 + TolB protein%2C protein/colicin/DNA uptake system PMID: 1683466 PMID: 8550462 best DB hits: BLAST: swissprot:O84604%3B TOLB_CHLTR TOLB PROTEIN PRECURSOR ----- pir:%3B E%3D0.006 pir:F81653%3B tolB protein%2C probable TC0888 [imported] - Chlamydia%3B E%3D0.014 pir:E75551%3B probable acyl-peptide hydrolase - Deinococcus radiodurans%3B E%3D0.020 COG: CT599%3B COG0823 Periplasmic component of the Tol biopolymer transport%3B E%3D5e-04 DR0165%3B COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases%3B E%3D0.002 HI0382%3B COG0823 Periplasmic component of the Tol biopolymer transport%3B E%3D0.005 gene gene3799 http://www.ncbi.nlm.nih.gov/gene/?term=RB6732 RB6734 RB6734 RB6734 3577198 3577353 - hypothetical protein gene gene3800 http://www.ncbi.nlm.nih.gov/gene/?term=RB6734 RB6735 RB6735 RB6735 3577388 3577540 - hypothetical protein gene gene3801 http://www.ncbi.nlm.nih.gov/gene/?term=RB6735 RB6736 RB6736 RB6736 3577551 3578852 - transposase best DB hits: BLAST: gb:AAD45539.1%3B U70376_1 (U70376) InsA [Streptomyces netropsis]%3B E%3D5e-33 gb:AAG60893.1%3B AF322013_12 (AF322013) ID460 [Bradyrhizobium%3B E%3D8e-33 ddbj:BAA19966.1%3B (D63923) transposase [Acetobacter pasteurianus]%3B E%3D1e-26 gene gene3802 http://www.ncbi.nlm.nih.gov/gene/?term=RB6736 RB6738 RB6738 RB6738 3579027 3579389 + hypothetical protein gene gene3803 http://www.ncbi.nlm.nih.gov/gene/?term=RB6738 RB674 RB674 RB674 359528 359779 - hypothetical protein gene gene365 http://www.ncbi.nlm.nih.gov/gene/?term=RB674 RB6740 RB6740 RB6740 3579474 3580466 + nonspecific acid phosphatase precursor PMID: 9639599 best DB hits: BLAST: gb:AAC05180.1%3B (U74652) nonspecific acid phosphatase precursor%3B E%3D1e-105 PFAM: PF00702%3B haloacid dehalogenase-like hydr%3B E%3D0.0014 gene gene3804 http://www.ncbi.nlm.nih.gov/gene/?term=RB6740 RB6742 RB6742 RB6742 3580591 3583347 - hypothetical protein gene gene3805 http://www.ncbi.nlm.nih.gov/gene/?term=RB6742 RB6745 RB6745 RB6745 3583390 3583503 - hypothetical protein gene gene3806 http://www.ncbi.nlm.nih.gov/gene/?term=RB6745 RB6746 RB6746 RB6746 3583522 3584742 - methyltransferase PMID: 8843436 best DB hits: BLAST: gb:AAC82905.1%3B (AF016485) ORF H1434 [Halobacterium sp. NRC-1]%3B E%3D1e-29 embl:CAB61860.1%3B (AL133252) methyltransferase%3B E%3D5e-24 gb:AAF00618.1%3B AF166383_1 (AF166383) methyltransferase [Mus%3B E%3D3e-19 COG: slr0303%3B COG0500 SAM-dependent methyltransferases%3B E%3D1e-13 VC0083%3B COG2226 Methylase involved in ubiquinone/menaquinone%3B E%3D1e-07 VNG1280C%3B COG0500 SAM-dependent methyltransferases%3B E%3D0.001 PFAM: PF01209%3B ubiE/COQ5 methyltransferase f%3B E%3D0.026 gene gene3807 http://www.ncbi.nlm.nih.gov/gene/?term=RB6746 RB6747 RB6747 RB6747 3584705 3585703 - Fe-S oxidoreductase PMID: 8905231 best DB hits: BLAST: pir:S76979%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D3e-56 embl:CAC24148.1%3B (AL512973) Hypothetical protein [Sulfolobus%3B E%3D5e-05 pir:C83581%3B heme d1 biosynthesis protein NirJ PA0511 [imported] -%3B E%3D0.016 COG: slr0304%3B COG0535 Predicted Fe-S oxidoreductases%3B E%3D3e-57 gene gene3808 http://www.ncbi.nlm.nih.gov/gene/?term=RB6747 RB6749 RB6749 RB6749 3585763 3586152 - hypothetical protein PMID: 7540906 gene gene3809 http://www.ncbi.nlm.nih.gov/gene/?term=RB6749 RB675 RB675 RB675 359793 361220 - hypothetical protein best DB hits: PFAM: PF00324%3B Amino acid permease%3B E%3D0.79 gene gene366 http://www.ncbi.nlm.nih.gov/gene/?term=RB675 RB6751 RB6751 clpC clpC 3586111 3588690 + negative regulator of genetic competence ClpC/MecB PMID: 8016066 best DB hits: BLAST: pir:T36384%3B probable ATP-binding proteinase - Streptomyces%3B E%3D0.0 swissprot:P37571%3B CLPC_BACSU NEGATIVE REGULATOR OF GENETIC%3B E%3D0.0 ddbj:BAB03822.1%3B (AP001507) class III stress response-related%3B E%3D0.0 COG: BS_clpC%3B COG0542 ATPases with chaperone activity%2C ATP-binding domain%3B E%3D0.0 PFAM: PF02861%3B Clp amino terminal domain%3B E%3D7.5e-19 PF00004%3B ATPase associated with%3B E%3D1.6e-12 PF02151%3B UvrB/uvrC motif%3B E%3D2.3e-09 gene gene3810 http://www.ncbi.nlm.nih.gov/gene/?term=RB6751 RB6753 RB6753 pabB pabB 3588713 3590266 + para-aminobenzoate synthase component I PMID: 3057324 best DB hits: BLAST: gb:AAG61067.1%3B AF322013_186 (AF322013) ID893 [Bradyrhizobium%3B E%3D7e-72 swissprot:P12679%3B PABB_KLEAE PARA-AMINOBENZOATE SYNTHASE COMPONENT%3B E%3D4e-59 gb:AAG56801.1%3B AE005404_4 (AE005404) p-aminobenzoate synthetase%2C%3B E%3D2e-57 COG: pabB%3B COG0147 Anthranilate/para-aminobenzoate synthases component I%3B E%3D4e-58 VC1303%3B COG0147 Anthranilate/para-aminobenzoate synthases component%3B E%3D4e-57 VNG0384G%3B COG0147 Anthranilate/para-aminobenzoate synthases%3B E%3D1e-45 PFAM: PF00425%3B chorismate binding enzyme%3B E%3D2.4e-103 gene gene3811 http://www.ncbi.nlm.nih.gov/gene/?term=RB6753 RB6755 RB6755 RB6755 3590294 3592045 - peptide synthase Catalyzes the specific recognition and activation of amino acids during peptide synthesis gene gene3812 http://www.ncbi.nlm.nih.gov/gene/?term=RB6755 RB6756 RB6756 rimK rimK 3592032 3593075 - ribosomal protein S6 modification protein PMID: 2570347 best DB hits: BLAST: gb:AAG32952.1%3B (AF032114) unknown [Methylobacterium extorquens]%3B E%3D3e-16 swissprot:Q58037%3B Y620_METJA HYPOTHETICAL PROTEIN MJ0620 -----%3B E%3D5e-15 pir:T43945%3B ribosomal protein S6 modification protein [imported] -%3B E%3D3e-13 COG: MJ0620%3B COG0189 Glutathione synthase/Ribosomal protein S6%3B E%3D5e-16 rimK%3B COG0189 Glutathione synthase/Ribosomal protein S6 modification%3B E%3D1e-11 VC2281%3B COG0189 Glutathione synthase/Ribosomal protein S6%3B E%3D3e-11 PFAM: PF02222%3B ATP-grasp domain%3B E%3D7.4e-06 gene gene3813 http://www.ncbi.nlm.nih.gov/gene/?term=RB6756 RB6759 RB6759 mch mch 3593021 3594022 - N(5)%2CN(10)-methenyltetrahydromethanopterin cyclohydrolase catalyzes the reversible formation of methenyl-H(4)methanopterin from N(5)-formyl-H(4)methanopterin gene gene3814 http://www.ncbi.nlm.nih.gov/gene/?term=RB6759 RB6761 RB6761 RB6761 3594163 3594759 + peroxiredoxin PMID: 99209008 best DB hits: BLAST: ddbj:BAB04667.1%3B (AP001510) bacterioferritin comigratory protein%3B E%3D0.003 pir:S74867%3B hypothetical protein sll1159 - Synechocystis sp. (strain%3B E%3D0.010 pir:G81021%3B thioredoxin%2C probable NMB1958 [imported] - Neisseria%3B E%3D0.029 COG: BH0948%3B COG1225 Peroxiredoxins%3B E%3D3e-04 NMB1958%3B COG0526 Thiol-disulfide isomerase and thioredoxins%3B E%3D0.003 PFAM: PF00578%3B AhpC/TSA family%3B E%3D0.21 gene gene3815 http://www.ncbi.nlm.nih.gov/gene/?term=RB6761 RB6763 RB6763 RB6763 3594756 3595832 + hypothetical protein best DB hits: BLAST: pir:T13482%3B hypothetical protein 34F3.5 - fruit fly (Drosophila%3B E%3D0.007 swissprot:P41949%3B YLK1_CAEEL HYPOTHETICAL 48.2 KD PROTEIN D1044.1%3B E%3D0.060 pir:T22412%3B hypothetical protein F49C12.7 - Caenorhabditis elegans%3B E%3D0.18 gene gene3816 http://www.ncbi.nlm.nih.gov/gene/?term=RB6763 RB6765 RB6765 RB6765 3595880 3597370 + N-acetylgalactosamine 6-sulfate sulfatase (GALNS) PMID: 8020961 best DB hits: BLAST: gb:AAF30402.1%3B AF109924_1 (AF109924) sulfatase 1 precursor [Helix%3B E%3D1e-39 ddbj:BAA04535.1%3B (D17629) N-acetylgalactosamine 6-sulfate%3B E%3D2e-39 embl:CAA36398.1%3B (X52150) arylsulphatase a [Homo sapiens]%3B E%3D3e-39 COG: PA0183%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D1e-33 PAB0793%3B COG2194 Predicted membrane-associated%2C metal-dependent%3B E%3D8e-11 Rv0296c%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D9e-11 PFAM: PF00884%3B Sulfatase%3B E%3D1.9e-44 gene gene3817 http://www.ncbi.nlm.nih.gov/gene/?term=RB6765 RB6766 RB6766 RB6766 3597367 3597534 + hypothetical protein gene gene3818 http://www.ncbi.nlm.nih.gov/gene/?term=RB6766 RB6767 RB6767 pcrA pcrA 3597576 3599591 - ATP-dependent DNA helicase PMID: 10192928 PMID: 3029683 best DB hits: BLAST: ddbj:BAB04367.1%3B (AP001509) ATP-dependent DNA helicase [Bacillus%3B E%3D1e-121 swissprot:Q53727%3B PCRA_STAAU ATP-DEPENDENT DNA HELICASE PCRA%3B E%3D1e-115 swissprot:P56255%3B PCRA_BACST ATP-DEPENDENT DNA HELICASE PCRA%3B E%3D1e-114 COG: BH0648%3B COG0210 Superfamily I DNA and RNA helicases%3B E%3D1e-122 PFAM: PF00580%3B UvrD/REP helicase%3B E%3D5.6e-173 gene gene3819 http://www.ncbi.nlm.nih.gov/gene/?term=RB6767 RB6770 RB6770 rpmA rpmA 3599617 3599862 - 50S ribosomal protein L27 involved in the peptidyltransferase reaction during translation gene gene3820 http://www.ncbi.nlm.nih.gov/gene/?term=RB6770 RB6771 RB6771 RB6771 3599921 3600991 - hypothetical protein gene gene3821 http://www.ncbi.nlm.nih.gov/gene/?term=RB6771 RB6774 RB6774 RB6774 3601004 3602617 - hypothetical protein gene gene3822 http://www.ncbi.nlm.nih.gov/gene/?term=RB6774 RB6776 RB6776 RB6776 3602594 3602776 + hypothetical protein gene gene3823 http://www.ncbi.nlm.nih.gov/gene/?term=RB6776 RB6777 RB6777 RB6777 3602786 3603199 + hypothetical protein gene gene3824 http://www.ncbi.nlm.nih.gov/gene/?term=RB6777 RB6778 RB6778 RB6778 3603142 3603321 + hypothetical protein gene gene3825 http://www.ncbi.nlm.nih.gov/gene/?term=RB6778 RB678 RB678 rhaA rhaA 361305 362588 - L-rhamnose isomerase catalyzes the formation of L-rhamnulose from L-rhamnose gene gene367 http://www.ncbi.nlm.nih.gov/gene/?term=RB678 RB6780 RB6780 RB6780 3603381 3605054 + sigma-70 factor PMID: 7489918 best DB hits: BLAST: ddbj:BAA76622.1%3B (AB019194) RpoT [Mycobacterium leprae]%3B E%3D2e-26 ddbj:BAA76621.1%3B (AB019193) RpoT [Mycobacterium leprae]%3B E%3D2e-26 pir:S61292%3B transcription initiation factor sigma mysA -%3B E%3D4e-26 COG: Rv2703%3B COG0568 DNA-directed RNA polymerase sigma subunits%3B E%3D1e-26 PFAM: PF00140%3B Sigma-70 factor%3B E%3D7.7e-20 gene gene3826 http://www.ncbi.nlm.nih.gov/gene/?term=RB6780 RB6781 RB6781 RB6781 3605138 3606571 + choline sulfatase PMID: 9736747 best DB hits: BLAST: pir:E83642%3B choline sulfatase PA0031 [imported] - Pseudomonas%3B E%3D2e-25 gb:AAF72520.1%3B AF248951_1 (AF248951) mucin-desulfating sulfatase%3B E%3D3e-24 swissprot:P31447%3B YIDJ_ECOLI SULFATASE YIDJ -----%3B E%3D3e-24 COG: PA0031%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D2e-26 PAB0793%3B COG2194 Predicted membrane-associated%2C metal-dependent%3B E%3D3e-08 ydeN%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D2e-07 PFAM: PF00884%3B Sulfatase%3B E%3D3.3e-13 gene gene3827 http://www.ncbi.nlm.nih.gov/gene/?term=RB6781 RB6782 RB6782 RB6782 3606608 3606796 + hypothetical protein gene gene3828 http://www.ncbi.nlm.nih.gov/gene/?term=RB6782 RB6783 RB6783 RB6783 3606725 3606901 - hypothetical protein gene gene3829 http://www.ncbi.nlm.nih.gov/gene/?term=RB6783 RB6784 RB6784 RB6784 3606809 3606922 + hypothetical protein gene gene3830 http://www.ncbi.nlm.nih.gov/gene/?term=RB6784 RB6785 RB6785 RB6785 3607173 3607283 - hypothetical protein gene gene3831 http://www.ncbi.nlm.nih.gov/gene/?term=RB6785 RB6786 RB6786 RB6786 3607257 3607775 + hypothetical protein gene gene3832 http://www.ncbi.nlm.nih.gov/gene/?term=RB6786 RB6787 RB6787 RB6787 3607369 3607881 - hypothetical protein gene gene3833 http://www.ncbi.nlm.nih.gov/gene/?term=RB6787 RB6789 RB6789 RB6789 3607945 3608487 - hypothetical protein gene gene3834 http://www.ncbi.nlm.nih.gov/gene/?term=RB6789 RB679 RB679 RB679 362605 362787 - hypothetical protein gene gene368 http://www.ncbi.nlm.nih.gov/gene/?term=RB679 RB6790 RB6790 RB6790 3608420 3608677 - hypothetical protein gene gene3835 http://www.ncbi.nlm.nih.gov/gene/?term=RB6790 RB6791 RB6791 RB6791 3608668 3608910 - hypothetical protein gene gene3836 http://www.ncbi.nlm.nih.gov/gene/?term=RB6791 RB6792 RB6792 RB6792 3608757 3608918 - hypothetical protein gene gene3837 http://www.ncbi.nlm.nih.gov/gene/?term=RB6792 RB6793 RB6793 RB6793 3608962 3610014 - permease best DB hits: BLAST: pir:F75057%3B hypothetical protein PAB2381 - Pyrococcus abyssi (strain%3B E%3D2e-13 pir:E71174%3B hypothetical protein PH0593 - Pyrococcus horikoshii%3B E%3D2e-06 pir:F72219%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D1e-04 COG: PAB2381%3B COG0697 Predicted permeases%3B E%3D2e-14 PFAM: PF00892%3B Integral membrane protein DUF6%3B E%3D5.2e-12 gene gene3838 http://www.ncbi.nlm.nih.gov/gene/?term=RB6793 RB6795 RB6795 RB6795 3610027 3611334 - hypothetical protein gene gene3839 http://www.ncbi.nlm.nih.gov/gene/?term=RB6795 RB6796 RB6796 RB6796 3611421 3613448 - hypothetical protein gene gene3840 http://www.ncbi.nlm.nih.gov/gene/?term=RB6796 RB6799 RB6799 RB6799 3613537 3614721 + hypothetical protein gene gene3841 http://www.ncbi.nlm.nih.gov/gene/?term=RB6799 RB68 RB68 RB68 26435 27682 + signal peptide gene gene38 http://www.ncbi.nlm.nih.gov/gene/?term=RB68 RB680 RB680 rhaR rhaR 362786 363658 + L-rhamnose operon transcriptional activator PMID: 3316663 best DB hits: BLAST: swissprot:P09378%3B RHAR_ECOLI L-RHAMNOSE OPERON TRANSCRIPTIONAL%3B E%3D1e-25 gb:AAG59100.1%3B AE005622_2 (AE005622) positive regulator for rhaRS%3B E%3D2e-25 gb:AAG59099.1%3B AE005622_1 (AE005622) positive regulator for rhaBAD%3B E%3D2e-20 COG: rhaR%3B COG2207 AraC-type DNA-binding domain-containing proteins%3B E%3D1e-26 PFAM: PF00165%3B Bacterial regulatory helix-turn-heli%3B E%3D2.7e-30 gene gene369 http://www.ncbi.nlm.nih.gov/gene/?term=RB680 RB6802 RB6802 RB6802 3614718 3615578 + gluconate 5-dehydrogenase PMID: 7751271 best DB hits: BLAST: swissprot:P50199%3B GNO_GLUOX GLUCONATE 5-DEHYDROGENASE%3B E%3D9e-23 swissprot:P39345%3B IDNO_ECOLI GLUCONATE 5-DEHYDROGENASE%3B E%3D4e-22 embl:CAC11881.1%3B (AL445065) glucose 1-dehydrogenase related%3B E%3D3e-21 COG: idnO%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D4e-23 DRA0200%3B COG1028 Dehydrogenases with different specificities%3B E%3D5e-22 BH0938%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D7e-20 PFAM: PF00106%3B short chain dehydrogenase%3B E%3D1e-43 gene gene3842 http://www.ncbi.nlm.nih.gov/gene/?term=RB6802 RB6807 RB6807 RB6807 3615617 3617815 + sialic acid-specific 9-O-acetylesterase PMID: 8918804 best DB hits: BLAST: embl:CAA67214.1%3B (X98625) sialic acid-specific 9-O-acetylesterase%3B E%3D5e-31 gb:AAB07813.1%3B (U40408) sialic-acid O-acetylesterase [Mus%3B E%3D9e-31 gb:AAD55976.1%3B (AF156856) cytosolic sialic acid%3B E%3D5e-28 gene gene3843 http://www.ncbi.nlm.nih.gov/gene/?term=RB6807 RB6808 RB6808 gcvH gcvH 3617968 3618576 - glycine cleavage system H protein 1 PMID: 8552027 best DB hits: BLAST: swissprot:O86566%3B GCSH_STRCO PROBABLE GLYCINE CLEAVAGE SYSTEM H%3B E%3D1e-15 swissprot:Q50607%3B GCSH_MYCTU PROBABLE GLYCINE CLEAVAGE SYSTEM H%3B E%3D6e-12 swissprot:P25855%3B GCSH_ARATH GLYCINE CLEAVAGE SYSTEM H PROTEIN 1%2C%3B E%3D7e-12 COG: Rv1826%3B COG0509 Glycine cleavage system H protein (lipoate-binding)%3B E%3D6e-13 VNG1605G%3B COG0509 Glycine cleavage system H protein%3B E%3D1e-12 gcvH%3B COG0509 Glycine cleavage system H protein (lipoate-binding)%3B E%3D2e-12 PFAM: PF01597%3B Glycine cleavage H-protein%3B E%3D8.4e-12 gene gene3844 http://www.ncbi.nlm.nih.gov/gene/?term=RB6808 RB6809 RB6809 thiL thiL 3618500 3619450 - thiamine-monophosphate kinase PMID: 9202461 best DB hits: BLAST: ddbj:BAA19714.1%3B (D88802) H. influenzae hypothetical protein%3B E%3D5e-27 swissprot:O05514%3B THIL_BACSU THIAMINE-MONOPHOSPHATE KINASE%3B E%3D5e-27 ddbj:BAB04263.1%3B (AP001508) thiamin-monophosphate kinase%3B E%3D2e-26 COG: BS_ydiA%3B COG0611 Thiamine monophosphate kinase%3B E%3D4e-28 MTH1864%3B COG2144 Selenophosphate synthetase-related proteins%3B E%3D2e-06 AF0733%3B COG0611 Thiamine monophosphate kinase%3B E%3D3e-06 PFAM: PF00586%3B AIR synthase related protein%2C N-%3B E%3D5e-06 PF02769%3B AIR synthase related protein%2C C-%3B E%3D6.4e-05 gene gene3845 http://www.ncbi.nlm.nih.gov/gene/?term=RB6809 RB681 RB681 fucA fucA 363698 364990 - L-fuculose-phosphate aldolase PMID: 2664711 best DB hits: BLAST: pir:E72546%3B L-fuculose-phosphate aldolase homolog - Aeropyrum pernix%3B E%3D6e-15 pir:C69054%3B L-fuculose-phosphate aldolase homolog - Methanobacterium%3B E%3D3e-14 swissprot:Q57199%3B YGBL_HAEIN HYPOTHETICAL PROTEIN HI1012 -----%3B E%3D9e-13 COG: APE1657%3B COG0235 Ribulose-5-phosphate 4-epimerase and related%3B E%3D6e-16 PFAM: PF00596%3B Class II Aldolase and Adducin N-t%3B E%3D8.8e-19 gene gene370 http://www.ncbi.nlm.nih.gov/gene/?term=RB681 RB6812 RB6812 RB6812 3619552 3619704 - hypothetical protein gene gene3846 http://www.ncbi.nlm.nih.gov/gene/?term=RB6812 RB6813 RB6813 dipZ dipZ 3619749 3620915 - DipZ protein%2C thioredoxin related to cytochrome c PMID: 9634230 best DB hits: BLAST: swissprot:Q10801%3B DIPZ_MYCTU DIPZ PROTEIN ----- pir: E70923%3B E%3D2e-18 embl:CAB58305.1%3B (AL121854) hypothetical protein SCJ33.06c%3B E%3D2e-11 gb:AAF45468.2%3B (AE002760) CG12547 gene product [Drosophila%3B E%3D2e-09 COG: Rv2874_2%3B COG0526 Thiol-disulfide isomerase and thioredoxins%3B E%3D2e-19 Rv2521%3B COG1225 Peroxiredoxins%3B E%3D0.007 DR2242%3B COG0450 Thiol - alkyl hydroperoxide reductases%3B E%3D0.009 gene gene3847 http://www.ncbi.nlm.nih.gov/gene/?term=RB6813 RB6818 RB6818 RB6818 3621016 3621930 - sensory transduction histidine kinase PMID: 9665876 best DB hits: BLAST: pir:D71379%3B probable sensory transduction histidine kinase -%3B E%3D5e-23 embl:CAB64771.1%3B (AJ007794) kin1 [Bacillus cereus] -----%3B E%3D1e-21 pir:B69863%3B two-component sensor histidine kinase homolog ykrQ -%3B E%3D2e-21 COG: BS_ykrQ_3%3B COG0642 Sensory transduction histidine kinases%3B E%3D2e-22 PFAM: PF00512%3B His Kinase A (phosphoacceptor) doma%3B E%3D6.1e-12 PF02518%3B Histidine kinase-%2C DNA gyrase B-%2C p%3B E%3D8.6e-32 gene gene3848 http://www.ncbi.nlm.nih.gov/gene/?term=RB6818 RB6821 RB6821 aspC aspC 3622148 3623422 + aspartate aminotransferase catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate gene gene3849 http://www.ncbi.nlm.nih.gov/gene/?term=RB6821 RB6822 RB6822 aroC aroC 3623410 3624624 + chorismate synthase catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis gene gene3850 http://www.ncbi.nlm.nih.gov/gene/?term=RB6822 RB6823 RB6823 RB6823 3624680 3626386 - transcription initiation factor sigma 70 PMID: 8188604 PMID: 8858155 best DB hits: BLAST: pir:I40872%3B transcription initiation factor sigma 70 - Chlamydophila%3B E%3D2e-74 swissprot:P18333%3B RPSD_CHLTR RNA POLYMERASE SIGMA FACTOR RPOD%3B E%3D3e-74 swissprot:Q9Z7F0%3B RPSD_CHLPN RNA POLYMERASE SIGMA FACTOR RPOD%3B E%3D7e-74 COG: CT615%3B COG0568 DNA-directed RNA polymerase sigma subunits%3B E%3D3e-75 PFAM: PF00140%3B Sigma-70 factor%3B E%3D2.8e-111 gene gene3851 http://www.ncbi.nlm.nih.gov/gene/?term=RB6823 RB6824 RB6824 RB6824 3626516 3626659 - hypothetical protein gene gene3852 http://www.ncbi.nlm.nih.gov/gene/?term=RB6824 RB6825 RB6825 glnE glnE 3626621 3630106 + glutamate-ammonia-ligase adenylyltransferase PMID: 10984043 best DB hits: BLAST: pir:B83021%3B glutamate-ammonia-ligase adenylyltransferase PA5014%3B E%3D1e-45 swissprot:P44419%3B GLNE_HAEIN GLUTAMATE-AMMONIA-LIGASE%3B E%3D7e-44 swissprot:P30870%3B GLNE_ECOLI GLUTAMATE-AMMONIA-LIGASE%3B E%3D7e-43 COG: PA5014%3B COG1391 Glutamine synthetase adenylyltransferase%3B E%3D1e-46 gene gene3853 http://www.ncbi.nlm.nih.gov/gene/?term=RB6825 RB6827 RB6827 RB6827 3630103 3633003 - serine/threonine protein kinase PMID: 9384377 best DB hits: BLAST: pir:H69878%3B probable protein kinase (EC 2.7.1.-) yloP - Bacillus%3B E%3D3e-35 ddbj:BAB06223.1%3B (AP001515) serinethreonine protein kinase%3B E%3D1e-32 embl:CAA10713.1%3B (AJ132604) hypothetical protein [Lactococcus%3B E%3D3e-32 COG: BS_yloP_1%3B COG0515 Serine/threonine protein kinases%3B E%3D2e-36 PFAM: PF00069%3B Protein kinase domain%3B E%3D1.6e-49 PF00480%3B ROK family%3B E%3D0.13 gene gene3854 http://www.ncbi.nlm.nih.gov/gene/?term=RB6827 RB6828 RB6828 hemC hemC 3633140 3634153 + porphobilinogen deaminase PMID: 1522882 best DB hits: BLAST: gb:AAK03896.1%3B (AE006218) Pbg [Pasteurella multocida]%3B E%3D4e-49 swissprot:Q60169%3B HEM3_PSEAE PORPHOBILINOGEN DEAMINASE (PBG)%3B E%3D3e-46 pdb:1YPN%3B Reduced Form Hydroxymethylbilane Synthase (K59q%3B E%3D2e-44 COG: PA5260%3B COG0181 Porphobilinogen deaminase%3B E%3D3e-47 PFAM: PF00126%3B Bacterial regulatory helix-tur%3B E%3D0.24 PF01379%3B Porphobilinogen deaminase%3B E%3D1.4e-105 gene gene3855 http://www.ncbi.nlm.nih.gov/gene/?term=RB6828 RB683 RB683 RB683 365036 366523 - aldehyde dehydrogenase PMID: 7484410 best DB hits: BLAST: gb:AAF52769.1%3B (AE003624) CG3752 gene product [Drosophila%3B E%3D5e-73 ddbj:BAA34785.1%3B (AB015226) RALDH2 [Homo sapiens]%3B E%3D2e-72 swissprot:O94788%3B DHAS_HUMAN RETINALDEHYDE-SPECIFIC DEHYDROGENASE%3B E%3D2e-72 COG: YOR374w%3B COG1012 NAD-dependent aldehyde dehydrogenases%3B E%3D2e-71 PFAM: PF00171%3B Aldehyde dehydrogenase%3B E%3D7e-156 gene gene371 http://www.ncbi.nlm.nih.gov/gene/?term=RB683 RB6831 RB6831 hemL hemL 3634211 3635530 + glutamate-1-semialdehyde 2%2C1-aminomutase PMID: 7763385 PMID: 1672867 best DB hits: BLAST: pir:E81978%3B probable glutamate-1-semialdehyde 2%2C1-aminomutase (EC%3B E%3D1e-116 swissprot:Q40147%3B GSA_LYCES GLUTAMATE-1-SEMIALDEHYDE%3B E%3D1e-115 swissprot:Q06741%3B GSA_XANCH GLUTAMATE-1-SEMIALDEHYDE%3B E%3D1e-115 COG: BS_hemL%3B COG0001 Glutamate-1-semialdehyde aminotransferase%3B E%3D1e-116 PFAM: PF00202%3B Aminotransferase class-III%3B E%3D1.8e-125 gene gene3856 http://www.ncbi.nlm.nih.gov/gene/?term=RB6831 RB6833 RB6833 RB6833 3635550 3636206 + hypothetical protein gene gene3857 http://www.ncbi.nlm.nih.gov/gene/?term=RB6833 RB6838 RB6838 RB6838 3636563 3636730 + hypothetical protein gene gene3858 http://www.ncbi.nlm.nih.gov/gene/?term=RB6838 RB6839 RB6839 RB6839 3636888 3637106 - hypothetical protein gene gene3859 http://www.ncbi.nlm.nih.gov/gene/?term=RB6839 RB684 RB684 RB684 366596 368557 - arylsulfatase PMID: 7744061 best DB hits: BLAST: swissprot:P51691%3B ARS_PSEAE ARYLSULFATASE (ARYL-SULFATE%3B E%3D3e-67 pir:S69336%3B arylsulfatase (EC 3.1.6.1) - Pseudomonas aeruginosa%3B E%3D3e-66 gb:AAF71377.1%3B AF262990_2 (AF262990) arylsulfatase [Klebsiella%3B E%3D1e-53 COG: PA0183%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D3e-68 HI1246%3B COG1368 Phosphoglycerol transferase and related proteins%2C%3B E%3D2e-05 PA2333%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D4e-04 PFAM: PF00884%3B Sulfatase%3B E%3D1.3e-78 gene gene372 http://www.ncbi.nlm.nih.gov/gene/?term=RB684 RB6841 RB6841 glmU glmU 3637141 3637938 + UDP-N-acetylglucosamine pyrophosphorylase PMID: 2555671 best DB hits: BLAST: pir:S66080%3B UDP-N-acetylglucosamine pyrophosphorylase gcaD -%3B E%3D1e-44 gb:AAK05981.1%3B AE006418_1 (AE006418) UDP-N-acetylglucosamine%3B E%3D1e-43 ddbj:BAB03784.1%3B (AP001507) UDP-N-acetylglucosamine%3B E%3D2e-43 COG: BS_gcaD%3B COG1207 N-acetylglucosamine-1-phosphate uridyltransferase%3B E%3D1e-45 MTH1589%3B COG1208 Nucleoside-diphosphate-sugar pyrophosphorylases%3B E%3D1e-10 PFAM: PF01128%3B Uncharacterized protein famil%3B E%3D2.4e-06 PF00483%3B Nucleotidyl transferase%3B E%3D1.7e-08 gene gene3860 http://www.ncbi.nlm.nih.gov/gene/?term=RB6841 RB6844 RB6844 prsA prsA 3637931 3638881 + ribose-phosphate pyrophosphokinase PMID: 8918235 best DB hits: BLAST: pir:S71262%3B ribose-phosphate pyrophosphokinase (EC 2.7.6.1) II -%3B E%3D2e-82 swissprot:Q42583%3B KPR2_ARATH RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 2%3B E%3D2e-82 embl:CAB43599.1%3B (AJ006940) phosphoribosyl pyrophosphate synthase%3B E%3D3e-82 COG: Cj0918c%3B COG0462 Phosphoribosylpyrophosphate synthetase%3B E%3D6e-78 PFAM: PF00156%3B Phosphoribosyl transferase domai%3B E%3D2.1e-25 gene gene3861 http://www.ncbi.nlm.nih.gov/gene/?term=RB6844 RB6845 RB6845 RB6845 3638904 3640397 - exopolysaccharide polymerization protein PMID: 10464185 best DB hits: BLAST: gb:AAC33460.2%3B (AF067140) exopolysaccharide polymerization%3B E%3D1e-06 ddbj:BAB07387.1%3B (AP001519) capsular polysaccharide biosynthesis%3B E%3D1e-06 embl:CAC06097.1%3B (AJ010494) ParA protein [Listeria monocytogenes]%3B E%3D3e-06 COG: BH3668%3B COG0489 ATPases involved in chromosome partitioning%3B E%3D1e-07 BH3027%3B COG2894 Septum formation inhibitor-activating ATPase%3B E%3D2e-06 BS_ywqD%3B COG0489 ATPases involved in chromosome partitioning%3B E%3D2e-06 PFAM: PF00991%3B ParA family ATPase%3B E%3D0.49 gene gene3862 http://www.ncbi.nlm.nih.gov/gene/?term=RB6845 RB6847 RB6847 RB6847 3640411 3642033 - hypothetical protein PMID: 11842247 gene gene3863 http://www.ncbi.nlm.nih.gov/gene/?term=RB6847 RB6848 RB6848 RB6848 3642216 3642443 + hypothetical protein gene gene3864 http://www.ncbi.nlm.nih.gov/gene/?term=RB6848 RB6849 RB6849 RB6849 3642232 3642537 - hypothetical protein gene gene3865 http://www.ncbi.nlm.nih.gov/gene/?term=RB6849 RB6850 RB6850 RB6850 3642555 3643991 - hypothetical protein best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 PF01856%3B Outer membrane protein%3B E%3D0.79 gene gene3866 http://www.ncbi.nlm.nih.gov/gene/?term=RB6850 RB6851 RB6851 RB6851 3644007 3644126 - hypothetical protein gene gene3867 http://www.ncbi.nlm.nih.gov/gene/?term=RB6851 RB6852 RB6852 RB6852 3644168 3645400 - signal peptide best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene3868 http://www.ncbi.nlm.nih.gov/gene/?term=RB6852 RB6856 RB6856 RB6856 3645425 3645613 - hypothetical protein gene gene3869 http://www.ncbi.nlm.nih.gov/gene/?term=RB6856 RB6858 RB6858 RB6858 3645782 3646807 - oxidoreductase PMID: 8759848 best DB hits: BLAST: swissprot:Q54728%3B YJHC_STRPN HYPOTHETICAL PROTEIN IN NANB 3'REGION%3B E%3D1e-04 pir:A83617%3B probable oxidoreductase PA0237 [imported] - Pseudomonas%3B E%3D0.033 pir:S56505%3B hypothetical 41.9K protein (leuX-fecE intergenic region)%3B E%3D0.094 COG: PA0237%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D0.003 PFAM: PF01408%3B Oxidoreductase%2C NAD-bindi%3B E%3D2.6e-05 gene gene3870 http://www.ncbi.nlm.nih.gov/gene/?term=RB6858 RB686 RB686 RB686 368557 370206 - arylsulfatase PMID: 7744061 best DB hits: BLAST: swissprot:P51691%3B ARS_PSEAE ARYLSULFATASE (ARYL-SULFATE%3B E%3D4e-51 pir:S69336%3B arylsulfatase (EC 3.1.6.1) - Pseudomonas aeruginosa%3B E%3D8e-51 gb:AAF71377.1%3B AF262990_2 (AF262990) arylsulfatase [Klebsiella%3B E%3D1e-41 COG: PA0183%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D4e-52 PFAM: PF00884%3B Sulfatase%3B E%3D2.2e-86 gene gene373 http://www.ncbi.nlm.nih.gov/gene/?term=RB686 RB6860 RB6860 RB6860 3646874 3648253 - NADH-dependent dehydrogenase PMID: 10192928 best DB hits: BLAST: embl:CAC24034.1%3B (AL512980) ORF-c34_017 [Sulfolobus solfataricus]%3B E%3D2e-10 ddbj:BAB04967.1%3B (AP001511) NADH-dependent dyhydrogenase%3B E%3D2e-10 gb:AAD51832.1%3B AF175299_7 (AF175299) ThuB [Sinorhizobium meliloti]%3B E%3D4e-10 COG: BH1248%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D2e-11 PFAM: PF01408%3B Oxidoreductase%2C NAD-bin%3B E%3D1.4e-20 gene gene3871 http://www.ncbi.nlm.nih.gov/gene/?term=RB6860 RB6863 RB6863 RB6863 3648286 3648444 - hypothetical protein gene gene3872 http://www.ncbi.nlm.nih.gov/gene/?term=RB6863 RB6864 RB6864 RB6864 3648295 3648429 + hypothetical protein gene gene3873 http://www.ncbi.nlm.nih.gov/gene/?term=RB6864 RB6865 RB6865 RB6865 3648392 3649453 + hypothetical protein gene gene3874 http://www.ncbi.nlm.nih.gov/gene/?term=RB6865 RB6866 RB6866 RB6866 3649470 3651020 - hypothetical protein gene gene3875 http://www.ncbi.nlm.nih.gov/gene/?term=RB6866 RB6867 RB6867 RB6867 3650927 3652456 - hypothetical protein gene gene3876 http://www.ncbi.nlm.nih.gov/gene/?term=RB6867 RB6870 RB6870 RB6870 3652446 3652676 + hypothetical protein gene gene3877 http://www.ncbi.nlm.nih.gov/gene/?term=RB6870 RB6873 RB6873 RB6873 3652782 3654230 - arylsulphatase A PMID: 7910580 best DB hits: BLAST: embl:CAA36398.1%3B (X52150) arylsulphatase a [Homo sapiens]%3B E%3D8e-29 gb:AAB03341.1%3B (U62317) arylsulfatase A [Homo sapiens]%3B E%3D8e-29 swissprot:P50428%3B ARSA_MOUSE ARYLSULFATASE A PRECURSOR (ASA)%3B E%3D1e-27 COG: ydeN%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D2e-27 BS_yfnI%3B COG1368 Phosphoglycerol transferase and related proteins%2C%3B E%3D0.004 PFAM: PF00884%3B Sulfatase%3B E%3D2e-60 gene gene3878 http://www.ncbi.nlm.nih.gov/gene/?term=RB6873 RB6876 RB6876 RB6876 3654471 3655649 + acyl-CoA thioesterase PMID: 8098033 best DB hits: BLAST: swissprot:P29679%3B TESA_ECOLI ACYL-COA THIOESTERASE I PRECURSOR%3B E%3D0.32 gb:AAB40248.1%3B (U82664) acyl-coA thioesterase I precursor%3B E%3D0.32 gb:AAG54851.1%3B AE005230_11 (AE005230) acyl-CoA thioesterase I%3B E%3D0.32 PFAM: PF01236%3B Sodium:galactoside symporter%3B E%3D0.17 gene gene3879 http://www.ncbi.nlm.nih.gov/gene/?term=RB6876 RB6880 RB6880 RB6880 3655896 3656162 - hypothetical protein gene gene3881 http://www.ncbi.nlm.nih.gov/gene/?term=RB6880 RB6881 RB6881 lolC lolC 3656194 3657792 + lipoprotein releasing system transmembrane protein LolC PMID: 10783239 best DB hits: BLAST: pir:E71676%3B hypothetical protein RP699 - Rickettsia prowazekii%3B E%3D2e-19 pir:C83271%3B conserved hypothetical protein PA2986 [imported] -%3B E%3D1e-17 pir:E83271%3B conserved hypothetical protein PA2988 [imported] -%3B E%3D4e-16 COG: RP699%3B COG0577 Predicted permease%3B E%3D2e-20 PFAM: PF02687%3B Predicted permease%3B E%3D3.5e-39 gene gene3882 http://www.ncbi.nlm.nih.gov/gene/?term=RB6881 RB6883 RB6883 lolD lolD 3657855 3658622 + lipoprotein releasing system ATP-binding protein LolD PMID: 10783239 best DB hits: BLAST: gb:AAG34709.1%3B AF320001_2 (AF320001) ATP binding protein%3B E%3D5e-49 swissprot:P45247%3B LOLD_HAEIN LIPOPROTEIN RELEASING SYSTEM%3B E%3D3e-45 gb:AAG18646.1%3B (AE004970) amino acid ABC transporter%2C ATP-binding%3B E%3D3e-45 COG: HI1549%3B COG1136 ABC-type (unclassified) transport system%2C ATPase%3B E%3D3e-46 PFAM: PF00005%3B ABC transporter%3B E%3D3.4e-58 gene gene3883 http://www.ncbi.nlm.nih.gov/gene/?term=RB6883 RB6884 RB6884 RB6884 3658683 3658841 + hypothetical protein gene gene3884 http://www.ncbi.nlm.nih.gov/gene/?term=RB6884 RB6885 RB6885 RB6885 3658845 3661157 - cytochrome c-554 PMID: 8063110 best DB hits: BLAST: swissprot:Q57142%3B C554_NITEU CYTOCHROME C-554 PRECURSOR (C554)%3B E%3D1e-05 pdb:1FT5%3B A Chain A%2C Crystal Structure Of The Oxidized State Of%3B E%3D1e-05 gene gene3885 http://www.ncbi.nlm.nih.gov/gene/?term=RB6885 RB6888 RB6888 RB6888 3661187 3662449 - hypothetical protein gene gene3886 http://www.ncbi.nlm.nih.gov/gene/?term=RB6888 RB6891 RB6891 RB6891 3662541 3665156 - hemocyanin type 1 PMID: 10681551 best DB hits: BLAST: embl:CAB76379.1%3B (Y13219) hemocyanin type 1 [Haliotis%3B E%3D0.20 embl:CAC20588.1%3B (AJ252741) hemocyanin [Haliotis tuberculata]%3B E%3D0.20 gene gene3887 http://www.ncbi.nlm.nih.gov/gene/?term=RB6891 RB6895 RB6895 rfe rfe 3665153 3666358 - undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase PMID: 1379743 best DB hits: BLAST: pir:S74927%3B lipophilic protein lim - Synechocystis sp. (strain PCC%3B E%3D3e-20 pir:B69721%3B teichoic acid linkage unit synthesis tagO - Bacillus%3B E%3D8e-19 pir:A55856%3B llm protein - Staphylococcus aureus ----- ddbj:%3B E%3D3e-18 COG: sll0648%3B COG0472 UDP-N-acetylmuramyl pentapeptide%3B E%3D2e-21 PFAM: PF00953%3B Glycosyl transferase%3B E%3D1.3e-27 gene gene3888 http://www.ncbi.nlm.nih.gov/gene/?term=RB6895 RB6898 RB6898 RB6898 3666374 3666835 - hypothetical protein gene gene3889 http://www.ncbi.nlm.nih.gov/gene/?term=RB6898 RB6901 RB6901 RB6901 3666617 3669100 + hypothetical protein gene gene3890 http://www.ncbi.nlm.nih.gov/gene/?term=RB6901 RB6903 RB6903 RB6903 3669059 3669220 - hypothetical protein gene gene3891 http://www.ncbi.nlm.nih.gov/gene/?term=RB6903 RB6904 RB6904 RB6904 3669200 3670501 + hypothetical protein gene gene3892 http://www.ncbi.nlm.nih.gov/gene/?term=RB6904 RB6905 RB6905 RB6905 3670529 3670783 - hypothetical protein gene gene3893 http://www.ncbi.nlm.nih.gov/gene/?term=RB6905 RB6906 RB6906 RB6906 3670719 3670961 - hypothetical protein gene gene3894 http://www.ncbi.nlm.nih.gov/gene/?term=RB6906 RB6907 RB6907 RB6907 3670884 3671042 + hypothetical protein gene gene3895 http://www.ncbi.nlm.nih.gov/gene/?term=RB6907 RB6908 RB6908 RB6908 3671057 3671329 - hypothetical protein gene gene3896 http://www.ncbi.nlm.nih.gov/gene/?term=RB6908 RB6909 RB6909 RB6909 3671248 3671514 + hypothetical protein gene gene3897 http://www.ncbi.nlm.nih.gov/gene/?term=RB6909 RB691 RB691 RB691 370208 370468 - hypothetical protein gene gene374 http://www.ncbi.nlm.nih.gov/gene/?term=RB691 RB6910 RB6910 RB6910 3671356 3671484 - hypothetical protein gene gene3898 http://www.ncbi.nlm.nih.gov/gene/?term=RB6910 RB6911 RB6911 RB6911 3671445 3672737 + signal peptide best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene3899 http://www.ncbi.nlm.nih.gov/gene/?term=RB6911 RB6912 RB6912 RB6912 3672793 3672960 + signal peptide gene gene3900 http://www.ncbi.nlm.nih.gov/gene/?term=RB6912 RB6914 RB6914 RB6914 3673034 3676120 + acid secreted protein ASPIC best DB hits: BLAST: embl:CAB98267.1%3B (AJ276171) ASPIC [Homo sapiens]%3B E%3D1e-07 embl:CAB98268.1%3B (AJ276171) ASPIC [Homo sapiens] ----- embl:%3B E%3D1e-07 embl:CAB98269.1%3B (AJ276171) ASPIC [Homo sapiens]%3B E%3D1e-07 COG: aq_854%3B COG0457 TPR-repeat-containing proteins%3B E%3D0.004 PFAM: PF01839%3B FG-GAP repeat%3B E%3D0.037 gene gene3901 http://www.ncbi.nlm.nih.gov/gene/?term=RB6914 RB6916 RB6916 RB6916 3676188 3676391 + hypothetical protein gene gene3902 http://www.ncbi.nlm.nih.gov/gene/?term=RB6916 RB6917 RB6917 RB6917 3676346 3676531 - hypothetical protein gene gene3903 http://www.ncbi.nlm.nih.gov/gene/?term=RB6917 RB6918 RB6918 RB6918 3676537 3676791 + hypothetical protein gene gene3904 http://www.ncbi.nlm.nih.gov/gene/?term=RB6918 RB6920 RB6920 RB6920 3676847 3677914 + fimbrial protein PMID: 8594326 best DB hits: BLAST: pir:S57418%3B fimbrial protein MS11-N556 precursor - Neisseria%3B E%3D0.009 ddbj:BAB06546.1%3B (AP001516) exogenous DNA-binding protein%3B E%3D0.014 gb:AAD05177.1%3B (AF110185) general secretory pathway protein G%3B E%3D0.014 COG: DR0548%3B COG2165 General secretory pathway proteins G and H and%3B E%3D0.010 PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.16 gene gene3905 http://www.ncbi.nlm.nih.gov/gene/?term=RB6920 RB6923 RB6923 RB6923 3677883 3678398 + hypothetical protein best DB hits: PFAM: PF02369%3B Bacterial Ig-like domain (group 1)%3B E%3D0.83 gene gene3906 http://www.ncbi.nlm.nih.gov/gene/?term=RB6923 RB6925 RB6925 RB6925 3677976 3678461 - hypothetical protein gene gene3907 http://www.ncbi.nlm.nih.gov/gene/?term=RB6925 RB6928 RB6928 RB6928 3678479 3678961 + hypothetical protein gene gene3908 http://www.ncbi.nlm.nih.gov/gene/?term=RB6928 RB693 RB693 RB693 370408 371190 - hypothetical protein PMID: 7542800 PMID: 11997336 best DB hits: BLAST: swissprot:P43965%3B YAFM_HAEIN HYPOTHETICAL PROTEIN HI0217 -----%3B E%3D0.012 COG: HI0217%3B COG1943 Predicted transposase%3B E%3D0.001 gene gene375 http://www.ncbi.nlm.nih.gov/gene/?term=RB693 RB6930 RB6930 gdhA gdhA 3679076 3680317 - glutamate dehydrogenase A PMID: 7551585 best DB hits: BLAST: swissprot:O04937%3B DHEA_NICPL GLUTAMATE DEHYDROGENASE A (GDH A)%3B E%3D1e-115 swissprot:Q43314%3B DHE1_ARATH GLUTAMATE DEHYDROGENASE 1 (GDH 1)%3B E%3D1e-115 pir:T04342%3B glutamate dehydrogenase (EC 1.4.1.2) - maize -----%3B E%3D1e-114 COG: TM1015%3B COG0334 Glutamate dehydrogenase/leucine dehydrogenase%3B E%3D1e-99 PFAM: PF02812%3B Glu/Leu/Phe/Val dehydrogenase%3B E%3D3.1e-56 PF00044%3B Glyceraldehyde 3-phosphate de%3B E%3D0.76 PF02254%3B KTN NAD-binding domain%3B E%3D0.33 gene gene3909 http://www.ncbi.nlm.nih.gov/gene/?term=RB6930 RB6932 RB6932 cysK cysK 3680349 3681308 - cysteine synthase (O-acetylserine sulfhydrylase) PMID: 10930739 best DB hits: BLAST: gb:AAG01804.1%3B AF276772_3 (AF276772) O-acetylserine sulfhydrylase%3B E%3D3e-83 swissprot:P95230%3B CYSK_MYCTU CYSTEINE SYNTHASE A (O-ACETYLSERINE%3B E%3D1e-82 pir:H81161%3B probable cysteine synthase (EC 4.2.99.8) NMA0974%3B E%3D1e-81 COG: Rv2334%3B COG0031 Cysteine synthase%3B E%3D1e-83 PFAM: PF00291%3B Pyridoxal-phosphate dependent enzym%3B E%3D1.3e-119 gene gene3910 http://www.ncbi.nlm.nih.gov/gene/?term=RB6932 RB6933 RB6933 korB korB 3681290 3682351 - 2-oxoglutarate ferredoxin oxidoreductase subunit beta catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin gene gene3911 http://www.ncbi.nlm.nih.gov/gene/?term=RB6933 RB6935 RB6935 korA korA 3682377 3684260 - 2-oxoglutarate ferredoxin oxidoreductase subunit alpha PMID: 11401501 best DB hits: BLAST: embl:CAC08296.1%3B (AL392148) oxidoreductase [Streptomyces%3B E%3D1e-165 embl:CAB60189.1%3B (AL132824) oxidoreductase alpha-subunit%3B E%3D1e-164 pir:F70864%3B probable oxidoreductase alpha subunit - Mycobacterium%3B E%3D1e-160 COG: Rv2455c_2%3B COG0674 Pyruvate:ferredoxin oxidoreductase and related%3B E%3D1e-106 Rv2455c_1%3B COG1014 Pyruvate:ferredoxin oxidoreductase and related%3B E%3D2e-46 BH2374_2%3B COG0674 Pyruvate:ferredoxin oxidoreductase and related%3B E%3D2e-40 PFAM: PF01855%3B Pyruvate flavodoxin/ferredoxin oxido%3B E%3D8.6e-64 gene gene3912 http://www.ncbi.nlm.nih.gov/gene/?term=RB6935 RB6937 RB6937 RB6937 3684322 3684504 + hypothetical protein gene gene3913 http://www.ncbi.nlm.nih.gov/gene/?term=RB6937 RB6938 RB6938 RB6938 3684477 3685985 - hypothetical protein gene gene3914 http://www.ncbi.nlm.nih.gov/gene/?term=RB6938 RB6941 RB6941 RB6941 3686076 3686675 - hypothetical protein gene gene3915 http://www.ncbi.nlm.nih.gov/gene/?term=RB6941 RB6945 RB6945 cyaA cyaA 3686749 3688518 + adenylate cyclase PMID: 9523018 best DB hits: BLAST: pir:C71320%3B probable adenylate cyclase - syphilis spirochete -----%3B E%3D8e-40 pir:F70563%3B probable transmembrane protein - Mycobacterium%3B E%3D2e-35 embl:CAA18817.1%3B (AL023093) membrane protein%3B E%3D4e-35 COG: TP0485%3B COG2114 Adenylate cyclase%2C family 3 (some proteins contain%3B E%3D8e-41 slr1991_2%3B COG2114 Adenylate cyclase%2C family 3 (some proteins%3B E%3D9e-14 PA3217%3B COG2114 Adenylate cyclase%2C family 3 (some proteins contain%3B E%3D4e-12 PFAM: PF00672%3B HAMP domain%3B E%3D8.7e-11 PF00211%3B Adenylate and Guanylate cyclase%3B E%3D7e-26 gene gene3916 http://www.ncbi.nlm.nih.gov/gene/?term=RB6945 RB6949 RB6949 RB6949 3688572 3689660 + hypothetical protein PMID: 11953381 gene gene3917 http://www.ncbi.nlm.nih.gov/gene/?term=RB6949 RB695 RB695 RB695 371239 373908 - N-acetylgalactosamine-6-sulfatase PMID: 20164110 best DB hits: BLAST: ddbj:BAA04535.1%3B (D17629) N-acetylgalactosamine 6-sulfate%3B E%3D2e-39 gb:AAF63858.1%3B (AF112242) N-acetylgalactosamine-6-sulfate%3B E%3D3e-38 gb:AAF49287.1%3B (AE003522) CG7402 gene product [Drosophila%3B E%3D3e-31 COG: PA0183%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D3e-30 VCA0802%3B COG1368 Phosphoglycerol transferase and related proteins%2C%3B E%3D1e-04 VNG0061C%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D2e-04 PFAM: PF00143%3B Interferon alpha/beta domain%3B E%3D0.59 PF00884%3B Sulfatase%3B E%3D1.9e-42 gene gene376 http://www.ncbi.nlm.nih.gov/gene/?term=RB695 RB6950 RB6950 dgkA dgkA 3689634 3690014 - diacylglycerol kinase PMID: 8071224 best DB hits: BLAST: ddbj:BAB05083.1%3B (AP001511) diacylglycerol kinase [Bacillus%3B E%3D3e-05 gb:AAA70044.1%3B (U29177) diacylglycerol kinase [Bacillus subtilis]%3B E%3D9e-05 swissprot:P19638%3B KDGL_BACSU DIACYLGLYCEROL KINASE (DAGK)%3B E%3D2e-04 COG: BH1364%3B COG0818 Diacylglycerol kinase%3B E%3D3e-06 PFAM: PF01219%3B Prokaryotic diacylglycerol kinase%3B E%3D1.1e-19 gene gene3918 http://www.ncbi.nlm.nih.gov/gene/?term=RB6950 RB6951 RB6951 RB6951 3690015 3693377 - hypothetical protein gene gene3919 http://www.ncbi.nlm.nih.gov/gene/?term=RB6951 RB6956 RB6956 RB6956 3693603 3695060 + arylsulphatase A PMID: 7910580 best DB hits: BLAST: embl:CAA36398.1%3B (X52150) arylsulphatase a [Homo sapiens]%3B E%3D1e-46 gb:AAB03341.1%3B (U62317) arylsulfatase A [Homo sapiens]%3B E%3D1e-46 pdb:1E2S%3B P Chain P%2C Crystal Structure Of An Arylsulfatase A%3B E%3D1e-45 COG: PA0183%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D4e-32 BS_yvgJ%3B COG1368 Phosphoglycerol transferase and related proteins%2C%3B E%3D0.006 PFAM: PF00884%3B Sulfatase%3B E%3D1.5e-63 gene gene3920 http://www.ncbi.nlm.nih.gov/gene/?term=RB6956 RB6958 RB6958 RB6958 3695186 3695752 - hypothetical protein PMID: 11016950 best DB hits: BLAST: gb:AAG19686.1%3B (AE005056) Vng1353c [Halobacterium sp. NRC-1]%3B E%3D0.009 gb:AAG19687.1%3B (AE005056) Vng1355h [Halobacterium sp. NRC-1]%3B E%3D0.034 ddbj:BAB05440.1%3B (AP001512) BH1721~~unknown conserved protein%3B E%3D0.049 COG: VNG1355H%3B COG3402 Uncharacterized protein%3B E%3D0.003 gene gene3921 http://www.ncbi.nlm.nih.gov/gene/?term=RB6958 RB6959 RB6959 ruvB ruvB 3695880 3696980 - Holliday junction DNA helicase RuvB promotes strand exchange during homologous recombination%3B RuvAB complex promotes branch migration%3B RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences%3B forms hexameric rings around opposite DNA arms%3B requires ATP for branch migration and orientation of RuvAB complex determines direction of migration gene gene3922 http://www.ncbi.nlm.nih.gov/gene/?term=RB6959 RB6961 RB6961 RB6961 3696994 3697689 + RNA polymerase sigma-E factor PMID: 7889934 best DB hits: BLAST: swissprot:O05843%3B RPOE_MYCTU RNA POLYMERASE SIGMA-E FACTOR%3B E%3D6e-07 gb:AAD41810.1%3B AF144091_4 (AF144091) sigma factor SigH%3B E%3D5e-06 pir:T42015%3B probable RNA polymerase sigma factor - Streptomyces%3B E%3D1e-05 COG: Rv3223c%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D5e-08 PFAM: PF00140%3B Sigma-70 factor%3B E%3D0.012 gene gene3923 http://www.ncbi.nlm.nih.gov/gene/?term=RB6961 RB6962 RB6962 RB6962 3697682 3698575 + transcriptional regulator best DB hits: BLAST: pir:T36872%3B hypothetical protein SCI51.09c - Streptomyces coelicolor%3B E%3D4e-08 swissprot:P35155%3B YPUH_BACSU HYPOTHETICAL 22.0 KD PROTEIN IN%3B E%3D3e-07 pir:D71320%3B conserved hypothetical protein TP0458 - syphilis%3B E%3D5e-06 COG: BS_ypuH%3B COG1386 Predicted transcriptional regulator containing the%3B E%3D2e-08 gene gene3924 http://www.ncbi.nlm.nih.gov/gene/?term=RB6962 RB6963 RB6963 RB6963 3698510 3699649 - Fe-S oxidoreductase PMID: 10360571 best DB hits: BLAST: pir:G72218%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D5e-45 pir:T02275%3B hypothetical protein T13D8.12 - Arabidopsis thaliana%3B E%3D3e-44 pir:H70337%3B conserved hypothetical protein aq_416 - Aquifex aeolicus%3B E%3D3e-43 COG: TM1715%3B COG0820 Predicted Fe-S oxidoreductase%3B E%3D4e-46 gene gene3925 http://www.ncbi.nlm.nih.gov/gene/?term=RB6963 RB6964 RB6964 RB6964 3699799 3703368 + L-sorbosone dehydrogenase PMID: 7574579 best DB hits: BLAST: swissprot:Q44091%3B SNDH_ACELI L-SORBOSONE DEHYDROGENASE (SNDH)%3B E%3D0.001 PFAM: PF00034%3B Cytochrome c%3B E%3D0.11 gene gene3926 http://www.ncbi.nlm.nih.gov/gene/?term=RB6964 RB6967 RB6967 RB6967 3703322 3705316 + permease PMID: 10984043 best DB hits: BLAST: pir:F83313%3B conserved hypothetical protein PA2651 [imported] -%3B E%3D7e-13 pir:C82300%3B conserved hypothetical protein VC0624 [imported] -%3B E%3D1e-12 swissprot:O83564%3B Y553_TREPA HYPOTHETICAL PROTEIN TP0553 -----%3B E%3D1e-09 COG: PA2651%3B COG0628 Predicted permease%3B E%3D7e-14 PFAM: PF01594%3B Domain of unknown function DU%3B E%3D1.1e-06 PF00694%3B Aconitase C-terminal domain%3B E%3D0.81 PF01594%3B Domain of unknown function DU%3B E%3D2.4e-27 gene gene3927 http://www.ncbi.nlm.nih.gov/gene/?term=RB6967 RB6968 RB6968 RB6968 3705375 3707036 + serine repeat-containing antigen PMID: 8813677 best DB hits: BLAST: pir:T30841%3B serine-repeat antigen 4 - Plasmodium vivax ----- gb:%3B E%3D0.030 swissprot:Q06852%3B SLP1_CLOTM CELL SURFACE GLYCOPROTEIN 1 PRECURSOR%3B E%3D0.37 gene gene3928 http://www.ncbi.nlm.nih.gov/gene/?term=RB6968 RB6969 RB6969 RB6969 3707053 3708402 - hypothetical protein PMID: 12024217 best DB hits: PFAM: PF01319%3B Cholesterol oxidase%3B E%3D0.56 PF00884%3B Sulfatase%3B E%3D0.052 gene gene3929 http://www.ncbi.nlm.nih.gov/gene/?term=RB6969 RB6971 RB6971 RB6971 3708439 3710583 - hypothetical protein gene gene3930 http://www.ncbi.nlm.nih.gov/gene/?term=RB6971 RB6973 RB6973 tehB tehB 3710584 3711420 + tellurite resistance protein TehB PMID: 10339832 PMID: 2060788 best DB hits: BLAST: ddbj:BAB05779.1%3B (AP001514) BH2060~~unknown [Bacillus halodurans]%3B E%3D5e-05 gb:AAD31610.1%3B (AF079807) tellurite resistance protein TehB%3B E%3D1e-04 swissprot:P45134%3B TEHB_HAEIN TELLURITE RESISTANCE PROTEIN TEHB%3B E%3D2e-04 COG: HI1275%3B COG0500 SAM-dependent methyltransferases%3B E%3D2e-05 VNG1117C%3B COG2520 Predicted methyltransferase%3B E%3D0.001 NMB1617%3B COG0500 SAM-dependent methyltransferases%3B E%3D0.002 gene gene3931 http://www.ncbi.nlm.nih.gov/gene/?term=RB6973 RB6977 RB6977 RB6977 3711550 3713001 + UDP-N-acetylhexosamine pyrophosphorylase PMID: 9603950 best DB hits: BLAST: gb:AAB31210.2%3B (S73498) AgX-1 antigen [Homo sapiens]%3B E%3D9e-64 swissprot:Q16222%3B UAP1_HUMAN UDP-N-ACETYLHEXOSAMINE%3B E%3D9e-64 gb:AAF52387.1%3B (AE003613) BcDNA:LD24639 gene product [Drosophila%3B E%3D1e-63 PFAM: PF01128%3B Uncharacterized protein family UPF00%3B E%3D0.091 PF01704%3B UTP--glucose-1-phosphate uridylyltra%3B E%3D3.5e-37 gene gene3932 http://www.ncbi.nlm.nih.gov/gene/?term=RB6977 RB6978 RB6978 RB6978 3712827 3715022 + hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:A83071%3B hypothetical protein PA4591 [imported] - Pseudomonas%3B E%3D2e-04 pir:S77541%3B hypothetical protein slr1207 - Synechocystis sp. (strain%3B E%3D4e-04 pir:D70391%3B hypothetical protein aq_1060 - Aquifex aeolicus -----%3B E%3D0.003 COG: PA4591%3B COG0845 Membrane-fusion protein%3B E%3D2e-05 aq_1060%3B COG1566 Multidrug resistance efflux pump%3B E%3D3e-04 PA3402%3B COG0845 Membrane-fusion protein%3B E%3D8e-04 PFAM: PF00358%3B phosphoenolpyruvate-dependent sug%3B E%3D0.72 gene gene3933 http://www.ncbi.nlm.nih.gov/gene/?term=RB6978 RB6982 RB6982 RB6982 3715019 3715879 + ABC transporter ATP-binding protein PMID: 10952301 best DB hits: BLAST: swissprot:Q9WYI7%3B Y352_THEMA HYPOTHETICAL ABC TRANSPORTER%3B E%3D4e-61 pir:A82184%3B ABC transporter ATP-binding protein VC1568 [imported] -%3B E%3D4e-59 ddbj:BAB07392.1%3B (AP001519) ABC transporter (ATP-binding protein)%3B E%3D2e-57 COG: TM0352%3B COG1136 ABC-type (unclassified) transport system%2C ATPase%3B E%3D4e-62 PFAM: PF00485%3B Phosphoribulokinase / Uridine%3B E%3D0.53 PF00005%3B ABC transporter%3B E%3D3.1e-55 gene gene3934 http://www.ncbi.nlm.nih.gov/gene/?term=RB6982 RB6983 RB6983 RB6983 3715876 3717207 + ATP-binding/permease fusion ABC transporter PMID: 10984043 best DB hits: BLAST: pir:S76946%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D2e-34 swissprot:O31712%3B YKNZ_BACSU HYPOTHETICAL 42.1 KDA PROTEIN IN%3B E%3D9e-33 pir:G72385%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D4e-30 COG: slr0594%3B COG0577 Predicted permease%3B E%3D2e-35 PFAM: PF02780%3B Transketolase%2C C-terminal dom%3B E%3D0.67 PF02687%3B Predicted permease%3B E%3D1.8e-34 gene gene3935 http://www.ncbi.nlm.nih.gov/gene/?term=RB6983 RB6984 RB6984 RB6984 3717257 3717394 + hypothetical protein gene gene3936 http://www.ncbi.nlm.nih.gov/gene/?term=RB6984 RB6985 RB6985 RB6985 3717360 3718910 + NADH-dependent dehydrogenase PMID: 10192928 best DB hits: BLAST: ddbj:BAB04967.1%3B (AP001511) NADH-dependent dyhydrogenase%3B E%3D1e-07 embl:CAC24034.1%3B (AL512980) ORF-c34_017 [Sulfolobus solfataricus]%3B E%3D2e-07 swissprot:P40332%3B YISS_BACSU HYPOTHETICAL 37.5 KD PROTEIN IN%3B E%3D5e-07 COG: BH1248%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D1e-08 PFAM: PF01113%3B Dihydrodipicolinate reductase%3B E%3D0.39 PF01408%3B Oxidoreductase%2C NAD-bindi%3B E%3D1.3e-23 gene gene3937 http://www.ncbi.nlm.nih.gov/gene/?term=RB6985 RB6989 RB6989 RB6989 3718958 3719206 - hypothetical protein gene gene3938 http://www.ncbi.nlm.nih.gov/gene/?term=RB6989 RB6990 RB6990 RB6990 3719166 3719456 - hypothetical protein gene gene3939 http://www.ncbi.nlm.nih.gov/gene/?term=RB6990 RB6991 RB6991 RB6991 3719393 3720892 - hypothetical protein best DB hits: PFAM: PF00429%3B ENV polyprotein (coat polypro%3B E%3D0.67 gene gene3940 http://www.ncbi.nlm.nih.gov/gene/?term=RB6991 RB6993 RB6993 cysH cysH 3720852 3721769 + phosphoadenosine phosphosulfate reductase PMID: 9006060 PMID: 2005873 best DB hits: BLAST: swissprot:P94498%3B CYH1_BACSU PHOSPHOADENOSINE PHOSPHOSULFATE%3B E%3D2e-48 swissprot:O06737%3B CYH2_BACSU PROBABLE PHOSPHOADENOSINE%3B E%3D4e-48 ddbj:BAB05205.1%3B (AP001512) 3'-phosphoadenosine 5'-phosphosulfate%3B E%3D3e-47 COG: BS_cysH%3B COG0175 3'-phosphoadenosine 5'-phosphosulfate%3B E%3D2e-49 cysH%3B COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase%3B E%3D1e-17 BU426%3B COG0175 3'-phosphoadenosine 5'-phosphosulfate%3B E%3D2e-13 PFAM: PF01507%3B Phosphoadenosine phosphosulfate r%3B E%3D4.8e-62 gene gene3941 http://www.ncbi.nlm.nih.gov/gene/?term=RB6993 RB6994 RB6994 RB6994 3721806 3722231 + hypothetical protein PMID: 8905231 best DB hits: BLAST: pir:S75800%3B hypothetical protein slr0846 - Synechocystis sp.%3B E%3D7e-10 swissprot:Q55433%3B Y846_SYNY3 HYPOTHETICAL 16.4 KD PROTEIN%3B E%3D7e-10 swissprot:Q10613%3B YC87_MYCTU HYPOTHETICAL PROTEIN RV1287 PRECURSOR%3B E%3D4e-07 COG: slr0846%3B COG1959 Predicted transcriptional regulator%3B E%3D7e-11 PFAM: PF02082%3B Uncharacterized protein family UPF00%3B E%3D9e-19 gene gene3942 http://www.ncbi.nlm.nih.gov/gene/?term=RB6994 RB6995 RB6995 RB6995 3722268 3722555 + hypothetical protein gene gene3943 http://www.ncbi.nlm.nih.gov/gene/?term=RB6995 RB6996 RB6996 fliC fliC 3722505 3724562 - flagellin PMID: 2498283 PMID: 814121 best DB hits: BLAST: pir:D72335%3B flagellin - Thermotoga maritima (strain MSB8) -----%3B E%3D2e-18 gb:AAC01555.1%3B (AF007122) flagellin [Vibrio cholerae]%3B E%3D1e-17 pir:C82112%3B flagellin FlaE VC2144 [imported] - Vibrio cholerae%3B E%3D1e-17 COG: TM0758%3B COG1344 Flagellin and related hook-associated proteins%3B E%3D2e-19 PFAM: PF00669%3B Bacterial flagellin N-terminus%3B E%3D1.1e-25 PF00700%3B Bacterial flagellin C-terminus%3B E%3D7.2e-18 gene gene3944 http://www.ncbi.nlm.nih.gov/gene/?term=RB6996 RB6999 RB6999 RB6999 3724601 3724768 - hypothetical protein gene gene3945 http://www.ncbi.nlm.nih.gov/gene/?term=RB6999 RB7 RB7 RB7 1548 1706 + hypothetical protein gene gene3 http://www.ncbi.nlm.nih.gov/gene/?term=RB7 RB700 RB700 ramA ramA 374015 377554 - alfa-L-rhamnosidase PMID: 10632887 best DB hits: BLAST: embl:CAB53341.1%3B (AJ238748) alfa-L-rhamnosidase [Clostridium%3B E%3D1e-103 pir:T36406%3B hypothetical protein SCF34.07 - Streptomyces coelicolor%3B E%3D4e-89 embl:CAB55731.1%3B (AL117387) secreted protein [Streptomyces%3B E%3D1e-69 PFAM: PF02083%3B Urotensin II%3B E%3D0.87 gene gene377 http://www.ncbi.nlm.nih.gov/gene/?term=RB700 RB7000 RB7000 uvrC uvrC 3724763 3725806 + excinuclease ABC subunit C PMID: 10567266 best DB hits: BLAST: pir:C75407%3B excinuclease ABC chain C - Deinococcus radiodurans%3B E%3D5e-04 ddbj:BAA85760.1%3B (AB033748) UVR-C protein [Deinococcus%3B E%3D0.003 swissprot:P73580%3B UVRC_SYNY3 EXCINUCLEASE ABC SUBUNIT C -----%3B E%3D0.008 COG: DR1354%3B COG0322 Nuclease subunit of the excinuclease complex%3B E%3D4e-05 PFAM: PF01541%3B Endo/excinuclease amino termin%3B E%3D2.9e-05 gene gene3946 http://www.ncbi.nlm.nih.gov/gene/?term=RB7000 RB7002 RB7002 RB7002 3725925 3726623 + hypothetical protein gene gene3947 http://www.ncbi.nlm.nih.gov/gene/?term=RB7002 RB7004 RB7004 RB7004 3726656 3727471 - glucose 1-dehydrogenase-like protein PMID: 10984043 best DB hits: BLAST: pir:E70082%3B glucose 1-dehydrogenase homolog yxnA - Bacillus subtilis%3B E%3D2e-21 gb:AAG18928.1%3B (AE004994) oxidoreductase%3B YusZ3 [Halobacterium%3B E%3D1e-19 pir:F83229%3B probable short chain dehydrogenase PA3330 [imported] -%3B E%3D1e-18 COG: BS_yxnA%3B COG1028 Dehydrogenases with different specificities%3B E%3D2e-22 PA3330%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D1e-19 VCA1057%3B COG0300 Short-chain dehydrogenases of various substrate%3B E%3D7e-19 PFAM: PF00106%3B short chain dehydrogenase%3B E%3D1.2e-38 gene gene3948 http://www.ncbi.nlm.nih.gov/gene/?term=RB7004 RB7008 RB7008 hflX hflX 3727474 3728853 - GTP-binding protein HflX PMID: 8248183 best DB hits: BLAST: swissprot:P25519%3B HFLX_ECOLI GTP-BINDING PROTEIN HFLX -----%3B E%3D2e-82 gb:AAG59369.1%3B AE005650_8 (AE005650) GTP - binding subunit of%3B E%3D2e-81 pir:D82334%3B GTP-binding protein HflX VC0348 [imported] - Vibrio%3B E%3D5e-78 COG: hflX%3B COG2262 GTPases%3B E%3D2e-83 slr1090%3B COG0536 Predicted GTPase%3B E%3D2e-06 PFAM: PF00005%3B ABC transporter%3B E%3D0.53 PF02421%3B Ferrous iron transport protein B%3B E%3D0.00079 PF01926%3B GTPase of unknown function%3B E%3D0.011 gene gene3949 http://www.ncbi.nlm.nih.gov/gene/?term=RB7008 RB701 RB701 RB701 377648 377797 + hypothetical protein gene gene378 http://www.ncbi.nlm.nih.gov/gene/?term=RB701 RB7010 RB7010 uvrC uvrC 3728944 3730368 - excinuclease ABC subunit C PMID: 6330676 best DB hits: BLAST: swissprot:P71689%3B UVRC_MYCTU EXCINUCLEASE ABC SUBUNIT C -----%3B E%3D4e-44 pir:G81845%3B excinuclease ABC subunit C NMA1540 [imported] -%3B E%3D6e-39 ddbj:BAB06816.1%3B (AP001517) excinuclease ABC (subunit C)%3B E%3D2e-38 COG: Rv1420%3B COG0322 Nuclease subunit of the excinuclease complex%3B E%3D3e-45 PFAM: PF01541%3B Endo/excinuclease amino terminal%3B E%3D2.1e-18 PF02151%3B UvrB/uvrC motif%3B E%3D8.4e-11 gene gene3950 http://www.ncbi.nlm.nih.gov/gene/?term=RB7010 RB7012 RB7012 RB7012 3730620 3731789 - hypothetical protein PMID: 10731132 best DB hits: BLAST: gb:AAF54635.1%3B (AE003691) CG5270 gene product [Drosophila%3B E%3D0.17 PFAM: PF02058%3B Guanylin precursor%3B E%3D0.1 gene gene3951 http://www.ncbi.nlm.nih.gov/gene/?term=RB7012 RB7014 RB7014 RB7014 3731793 3732359 - hypothetical protein gene gene3952 http://www.ncbi.nlm.nih.gov/gene/?term=RB7014 RB7015 RB7015 RB7015 3732349 3732537 - hypothetical protein gene gene3953 http://www.ncbi.nlm.nih.gov/gene/?term=RB7015 RB7016 RB7016 RB7016 3732513 3733238 + hypothetical protein gene gene3954 http://www.ncbi.nlm.nih.gov/gene/?term=RB7016 RB7019 RB7019 RB7019 3733282 3733671 - hypothetical protein best DB hits: BLAST: pir:H70988%3B hypothetical protein Rv1767 - Mycobacterium%3B E%3D0.065 pir:C69225%3B conserved hypothetical protein MTH935 -%3B E%3D0.14 COG: Rv1767%3B COG0599 Uncharacterized ACR%2C homolog of%3B E%3D0.006 PFAM: PF02627%3B Carboxymuconolactone decarboxylase%3B E%3D1e-08 gene gene3955 http://www.ncbi.nlm.nih.gov/gene/?term=RB7019 RB702 RB702 RB702 377956 378195 - hypothetical protein gene gene379 http://www.ncbi.nlm.nih.gov/gene/?term=RB702 RB7020 RB7020 hemD hemD 3733593 3735125 - uroporphyrinogen III synthase/methyltransferase PMID: 7665501 best DB hits: BLAST: gb:AAK00606.1%3B AF221100_3 (AF221100) uroporphyrinogen III%3B E%3D1e-89 swissprot:Q59294%3B HEM4_CLOJO PORPHYRIN BIOSYNTHESIS PROTEIN HEMD%3B E%3D1e-64 gb:AAC18588.1%3B (AF064061) uroporphyrinogen-III%3B E%3D3e-63 COG: NMB1156_2%3B COG0007 Uroporphyrinogen-III methylase%3B E%3D2e-44 sll0166_2%3B COG1587 Uroporphyrinogen-III synthase%3B E%3D7e-30 PFAM: PF00590%3B Tetrapyrrole (Corrin/Porphyrin)%3B E%3D1.2e-63 PF02602%3B Uroporphyrinogen-III synthase H%3B E%3D7.1e-43 gene gene3956 http://www.ncbi.nlm.nih.gov/gene/?term=RB7020 RB7022 RB7022 rpsT rpsT 3735291 3735563 + 30S ribosomal protein S20 PMID: 6267039 PMID: 786731 best DB hits: BLAST: pir:F82559%3B 30S ribosomal protein S20 XF2421 [imported] - Xylella%3B E%3D3e-06 pir:A70452%3B ribosomal protein S20 - Aquifex aeolicus ----- gb:%3B E%3D8e-06 pir:E83074%3B 30S ribosomal protein S20 PA4563 [imported] -%3B E%3D1e-05 COG: XF2421%3B COG0268 Ribosomal protein S20%3B E%3D4e-07 PFAM: PF01649%3B Ribosomal protein S20%3B E%3D5.2e-32 gene gene3957 http://www.ncbi.nlm.nih.gov/gene/?term=RB7022 RB7023 RB7023 RB7023 3735792 3736535 - hypothetical protein PMID: 8590279 best DB hits: BLAST: swissprot:Q55909%3B Y305_SYNY3 HYPOTHETICAL 22.2 KD PROTEIN SLR0305%3B E%3D0.003 embl:CAB61866.1%3B (AL133252) integral membrane protein%3B E%3D0.028 gb:AAF69152.1%3B AC007915_4 (AC007915) F27F5.5 [Arabidopsis%3B E%3D0.85 COG: slr0305%3B COG0398 Uncharacterized ACR%3B E%3D3e-04 gene gene3958 http://www.ncbi.nlm.nih.gov/gene/?term=RB7023 RB7026 RB7026 RB7026 3736532 3736702 - hypothetical protein gene gene3959 http://www.ncbi.nlm.nih.gov/gene/?term=RB7026 RB7027 RB7027 RB7027 3736673 3736885 + hypothetical protein gene gene3960 http://www.ncbi.nlm.nih.gov/gene/?term=RB7027 RB7028 RB7028 RB7028 3736857 3738494 + hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:B83295%3B hypothetical protein PA2794 [imported] - Pseudomonas%3B E%3D0.056 gb:AAF60322.1%3B (AF236853) sialidase [Pseudomonas aeruginosa]%3B E%3D0.16 PFAM: PF02012%3B BNR repeat%3B E%3D0.15 gene gene3961 http://www.ncbi.nlm.nih.gov/gene/?term=RB7028 RB7030 RB7030 RB7030 3738527 3739885 - hypothetical protein gene gene3962 http://www.ncbi.nlm.nih.gov/gene/?term=RB7030 RB7033 RB7033 RB7033 3739882 3742263 - filamin PMID: 8244995 best DB hits: BLAST: pir:A49551%3B filamin%2C Muller cell - chicken ----- gb:%3B E%3D0.77 gene gene3963 http://www.ncbi.nlm.nih.gov/gene/?term=RB7033 RB7036 RB7036 RB7036 3742454 3742618 + hypothetical protein gene gene3964 http://www.ncbi.nlm.nih.gov/gene/?term=RB7036 RB7037 RB7037 RB7037 3742675 3742908 - hypothetical protein gene gene3965 http://www.ncbi.nlm.nih.gov/gene/?term=RB7037 RB7038 RB7038 RB7038 3742902 3743555 + hypothetical protein gene gene3966 http://www.ncbi.nlm.nih.gov/gene/?term=RB7038 RB7039 RB7039 RB7039 3742965 3743573 - hypothetical protein gene gene3967 http://www.ncbi.nlm.nih.gov/gene/?term=RB7039 RB704 RB704 RB704 378137 378427 + transposase PMID: 9761671 best DB hits: BLAST: gb:AAG58100.1%3B AE005527_3 (AE005527) unknown protein encoded by%3B E%3D0.002 gb:AAG53987.1%3B AF327445_1 (AF327445) transposase A%3B E%3D0.003 gb:AAF28119.1%3B AF153317_15 (AF153317) InsA [Shigella%3B E%3D0.007 COG: PA1937%3B COG2963 Transposase%3B E%3D0.004 PFAM: PF01381%3B Helix-turn-helix%3B E%3D0.53 PF01527%3B Transposase%3B E%3D6.1e-18 gene gene380 http://www.ncbi.nlm.nih.gov/gene/?term=RB704 RB7041 RB7041 RB7041 3743753 3744025 - hypothetical protein gene gene3968 http://www.ncbi.nlm.nih.gov/gene/?term=RB7041 RB7042 RB7042 RB7042 3743971 3744246 + hypothetical protein gene gene3969 http://www.ncbi.nlm.nih.gov/gene/?term=RB7042 RB7045 RB7045 RB7045 3744340 3744798 + hypothetical protein gene gene3970 http://www.ncbi.nlm.nih.gov/gene/?term=RB7045 RB7048 RB7048 RB7048 3744905 3745480 + hypothetical protein gene gene3971 http://www.ncbi.nlm.nih.gov/gene/?term=RB7048 RB7049 RB7049 RB7049 3745423 3745623 + hypothetical protein gene gene3972 http://www.ncbi.nlm.nih.gov/gene/?term=RB7049 RB7050 RB7050 RB7050 3745617 3745946 + hypothetical protein gene gene3973 http://www.ncbi.nlm.nih.gov/gene/?term=RB7050 RB7052 RB7052 RB7052 3745943 3746491 + hypothetical protein gene gene3974 http://www.ncbi.nlm.nih.gov/gene/?term=RB7052 RB7056 RB7056 RB7056 3746488 3746775 + hypothetical protein gene gene3975 http://www.ncbi.nlm.nih.gov/gene/?term=RB7056 RB7057 RB7057 RB7057 3746784 3747071 + hypothetical protein gene gene3976 http://www.ncbi.nlm.nih.gov/gene/?term=RB7057 RB7058 RB7058 RB7058 3747156 3749396 + serine/threonine kinase best DB hits: BLAST: gb:AAD42851.1%3B AF159689_3 (AF159689) serinethreonine kinase PKN3%3B E%3D3e-40 swissprot:P71584%3B PKNB_MYCTU SERINETHREONINE-PROTEIN%3B E%3D5e-38 swissprot:P54744%3B PKNB_MYCLE SERINETHREONINE-PROTEIN%3B E%3D2e-35 COG: Rv0014c_1%3B COG0515 Serine/threonine protein kinases%3B E%3D5e-39 PFAM: PF00069%3B Protein kinase domain%3B E%3D2.1e-34 gene gene3977 http://www.ncbi.nlm.nih.gov/gene/?term=RB7058 RB706 RB706 RB706 378430 379308 + transposase PMID: 11735367 best DB hits: BLAST: gb:AAA88919.1%3B (U13013) ORFB [Leptospira interrogans]%3B E%3D3e-47 gb:AAA88916.1%3B (U13012) ORFB [Leptospira interrogans]%3B E%3D1e-46 gb:AAC05649.1%3B (AF038931) probable transposase-related protein%3B E%3D1e-45 COG: DRB0019.2%3B COG2801 transposase%3B E%3D1e-35 PFAM: PF00665%3B Integrase core domain%3B E%3D4.8e-40 gene gene381 http://www.ncbi.nlm.nih.gov/gene/?term=RB706 RB7061 RB7061 RB7061 3749482 3751161 - hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:A83099%3B hypothetical protein PA4371 [imported] - Pseudomonas%3B E%3D3e-09 pir:A82220%3B hypothetical protein VC1265 [imported] - Vibrio cholerae%3B E%3D4e-08 pir:E81378%3B cytochrome-c peroxidase (EC 1.11.1.5) Cj0358%3B E%3D0.23 gene gene3978 http://www.ncbi.nlm.nih.gov/gene/?term=RB7061 RB7063 RB7063 RB7063 3751250 3751696 + hypothetical protein gene gene3979 http://www.ncbi.nlm.nih.gov/gene/?term=RB7063 RB7065 RB7065 RB7065 3751693 3752295 - hypothetical protein gene gene3980 http://www.ncbi.nlm.nih.gov/gene/?term=RB7065 RB7067 RB7067 RB7067 3752187 3753347 - hypothetical protein gene gene3981 http://www.ncbi.nlm.nih.gov/gene/?term=RB7067 RB7070 RB7070 rpoA rpoA 3753366 3753644 - DNA-directed RNA polymerase alpha chain PMID: 3093467 best DB hits: BLAST: swissprot:P20429%3B RPOA_BACSU DNA-DIRECTED RNA POLYMERASE ALPHA%3B E%3D1e-07 gb:AAA81287.1%3B (U30821) alpha subunit of RNA polymerase%3B E%3D5e-07 swissprot:O50634%3B RPOA_BACHD DNA-DIRECTED RNA POLYMERASE ALPHA%3B E%3D1e-06 COG: BS_rpoA%3B COG0202 DNA-directed RNA polymerase alpha subunit/40 kD%3B E%3D1e-08 PFAM: PF01000%3B Bacterial RNA polymerase%2C alpha%3B E%3D8.2e-15 gene gene3982 http://www.ncbi.nlm.nih.gov/gene/?term=RB7070 RB7072 RB7072 lplA lplA 3753783 3754556 - lipoate-protein ligase A PMID: 10684935 best DB hits: BLAST: pir:B75110%3B lipoate-protein ligase A related PAB1916 - Pyrococcus%3B E%3D7e-10 pir:F72056%3B lipoate-protein ligase-related protein CP0129 [imported]%3B E%3D2e-09 gb:AAK04161.1%3B AE006244_10 (AE006244) lipoate-protein ligase%3B E%3D2e-09 COG: PAB1916%3B COG0095 Lipoate-protein ligase A%3B E%3D7e-11 PFAM: PF02539%3B Lipoate-protein ligase A%3B E%3D0.00023 gene gene3983 http://www.ncbi.nlm.nih.gov/gene/?term=RB7072 RB7074 RB7074 RB7074 3754537 3758208 - ABC transporter permease PMID: 9371463 best DB hits: BLAST: pir:F69192%3B conserved hypothetical protein MTH695 - Methanobacterium%3B E%3D0.003 gb:AAG18647.1%3B (AE004970) Vng0003c [Halobacterium sp. NRC-1]%3B E%3D0.015 embl:CAB89462.1%3B (AL354048) ABC transporter integral%3B E%3D0.024 COG: MTH695%3B COG0577 Predicted permease%3B E%3D3e-04 PFAM: PF01890%3B CbiG%3B E%3D0.096 PF02687%3B Predicted permease%3B E%3D5.7e-06 PF00951%3B Arterivirus GL envelope glycop%3B E%3D0.081 gene gene3984 http://www.ncbi.nlm.nih.gov/gene/?term=RB7074 RB7077 RB7077 RB7077 3758205 3758360 - hypothetical protein gene gene3985 http://www.ncbi.nlm.nih.gov/gene/?term=RB7077 RB7078 RB7078 RB7078 3758295 3760328 + hypothetical protein best DB hits: PFAM: PF02321%3B Outer membrane efflux protein%3B E%3D0.52 gene gene3986 http://www.ncbi.nlm.nih.gov/gene/?term=RB7078 RB708 RB708 RB708 379337 380773 - sulfatase 1 precursor gene gene382 http://www.ncbi.nlm.nih.gov/gene/?term=RB708 RB7080 RB7080 RB7080 3760290 3760580 - hypothetical protein gene gene3987 http://www.ncbi.nlm.nih.gov/gene/?term=RB7080 RB7081 RB7081 RB7081 3760558 3761379 - short chain dehydrogenase/reductase oxidoreductase PMID: 10360571 best DB hits: BLAST: pir:D72377%3B oxidoreductase%2C short chain dehydrogenasereductase%3B E%3D7e-38 gb:AAB90046.1%3B (AE001021) 2-deoxy-D-gluconate 3-dehydrogenase%3B E%3D9e-35 swissprot:P39640%3B YWFD_BACSU HYPOTHETICAL OXIDOREDUCTASE IN%3B E%3D2e-33 COG: TM0441%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D6e-39 BS_ywfD%3B COG1028 Dehydrogenases with different specificities%3B E%3D2e-34 BH2491%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D5e-30 PFAM: PF00106%3B short chain dehydrogenase%3B E%3D2.2e-65 PF00678%3B Short chain dehydrogenase/reduct%3B E%3D1.1e-11 gene gene3988 http://www.ncbi.nlm.nih.gov/gene/?term=RB7081 RB7082 RB7082 RB7082 3761407 3761766 - hypothetical protein gene gene3989 http://www.ncbi.nlm.nih.gov/gene/?term=RB7082 RB7084 RB7084 ppaC ppaC 3761774 3763429 - manganese-dependent inorganic pyrophosphatase catalyzes the hydrolysis of pyrophosphate to phosphate gene gene3990 http://www.ncbi.nlm.nih.gov/gene/?term=RB7084 RB7085 RB7085 RB7085 3763435 3763662 - hypothetical protein gene gene3991 http://www.ncbi.nlm.nih.gov/gene/?term=RB7085 RB7087 RB7087 RB7087 3763705 3764268 - phosphopantothenoylcysteine decarboxylase decarboxylates 4-phosphopantothenoylcysteine to form 4'-phosphopantotheine. gene gene3992 http://www.ncbi.nlm.nih.gov/gene/?term=RB7087 RB7088 RB7088 RB7088 3764268 3764540 - hypothetical protein gene gene3993 http://www.ncbi.nlm.nih.gov/gene/?term=RB7088 RB7090 RB7090 gmk gmk 3764525 3765154 - guanylate kinase PMID: 8390989 best DB hits: BLAST: swissprot:P24234%3B KGUA_ECOLI GUANYLATE KINASE (GMP KINASE) -----%3B E%3D8e-32 gb:AAG58792.1%3B AE005592_3 (AE005592) guanylate kinase [Escherichia%3B E%3D5e-31 pir:C72223%3B guanylate kinase - Thermotoga maritima (strain MSB8)%3B E%3D7e-31 COG: gmk%3B COG0194 Guanylate kinase%3B E%3D8e-33 PFAM: PF01583%3B Adenylylsulfate kinase%3B E%3D0.11 PF00005%3B ABC transporter%3B E%3D0.019 PF00485%3B Phosphoribulokinase / Uridine%3B E%3D0.33 gene gene3994 http://www.ncbi.nlm.nih.gov/gene/?term=RB7090 RB7091 RB7091 RB7091 3765164 3766192 - hypothetical protein PMID: 10192928 best DB hits: BLAST: ddbj:BAB06233.1%3B (AP001515) BH2514~~unknown conserved protein%3B E%3D2e-32 pir:C82350%3B conserved hypothetical protein VC0209 [imported] -%3B E%3D1e-30 pir:A69878%3B conserved hypothetical protein yloC - Bacillus subtilis%3B E%3D8e-30 COG: BH2514%3B COG1561 Uncharacterized stress-induced protein%3B E%3D2e-33 gene gene3995 http://www.ncbi.nlm.nih.gov/gene/?term=RB7091 RB7093 RB7093 RB7093 3766189 3766845 - hypothetical protein gene gene3996 http://www.ncbi.nlm.nih.gov/gene/?term=RB7093 RB7095 RB7095 tpiA tpiA 3766805 3767569 - triosephosphate isomerase PMID: 1452037 best DB hits: BLAST: ddbj:BAB07277.1%3B (AP001519) triosephosphate isomerase [Bacillus%3B E%3D6e-61 swissprot:P35144%3B TPIS_BACME TRIOSEPHOSPHATE ISOMERASE (TIM)%3B E%3D1e-59 swissprot:P27876%3B TPIS_BACSU TRIOSEPHOSPHATE ISOMERASE (TIM)%3B E%3D3e-58 COG: BH3558%3B COG0149 Triosephosphate isomerase%3B E%3D6e-62 PFAM: PF00121%3B Triosephosphate isomerase%3B E%3D3.8e-140 gene gene3997 http://www.ncbi.nlm.nih.gov/gene/?term=RB7095 RB7096 RB7096 aroA aroA 3767566 3768633 - 3-deoxy-7-phosphoheptulonate synthase catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate gene gene3998 http://www.ncbi.nlm.nih.gov/gene/?term=RB7096 RB7097 RB7097 RB7097 3768676 3768837 - hypothetical protein gene gene3999 http://www.ncbi.nlm.nih.gov/gene/?term=RB7097 RB7098 RB7098 RB7098 3768938 3769519 + ECF family RNA polymerase sigma factor PMID: 9139909 best DB hits: BLAST: gb:AAC45219.1%3B (U87308) extracytoplasmic function alternative%3B E%3D3e-10 pir:H70507%3B probable sigE protein - Mycobacterium tuberculosis%3B E%3D4e-09 ddbj:BAB03982.1%3B (AP001507) RNA polymerase ECF-type sigma factor%3B E%3D2e-08 COG: Rv1221%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D4e-10 PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D0.028 PF00140%3B Sigma-70 factor%3B E%3D0.00033 PF01381%3B Helix-turn-helix%3B E%3D0.055 gene gene4000 http://www.ncbi.nlm.nih.gov/gene/?term=RB7098 RB7099 RB7099 RB7099 3769569 3772226 + hypothetical protein PMID: 9278503 best DB hits: BLAST: swissprot:P76481%3B YFBK_ECOLI HYPOTHETICAL 63.6 KD PROTEIN IN%3B E%3D3e-99 embl:CAB75310.1%3B (AL139164) lipoprotein [Streptomyces%3B E%3D4e-54 swissprot:Q55874%3B Y103_SYNY3 HYPOTHETICAL 45.8 KD PROTEIN SLL0103%3B E%3D8e-10 COG: yfbK%3B COG2304 Protein containing von Willebrand factor (vWF) type A%3B E%3D1e-100 sll0103%3B COG2304 Protein containing von Willebrand factor (vWF) type%3B E%3D7e-11 PFAM: PF00092%3B von Willebrand factor type A domain%3B E%3D4.9e-07 gene gene4001 http://www.ncbi.nlm.nih.gov/gene/?term=RB7099 RB71 RB71 RB71 27689 28141 + signal peptide gene gene39 http://www.ncbi.nlm.nih.gov/gene/?term=RB71 RB7100 RB7100 RB7100 3772343 3773137 - hypothetical protein PMID: 11792842 gene gene4002 http://www.ncbi.nlm.nih.gov/gene/?term=RB7100 RB7102 RB7102 RB7102 3773179 3774120 - hypothetical protein best DB hits: BLAST: swissprot:Q19200%3B STO1_CAEEL STO-1 PROTEIN ----- pir: T15971%3B E%3D0.006 embl:CAB94650.1%3B (AL359215) secreted protein.%3B E%3D0.039 pir:E72322%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D0.26 gene gene4003 http://www.ncbi.nlm.nih.gov/gene/?term=RB7102 RB7104 RB7104 RB7104 3774053 3775084 - hypothetical protein PMID: 9477341 best DB hits: BLAST: embl:CAB64583.1%3B (AL135941) hypothetical protein L391.06%3B E%3D0.003 gb:AAK04726.1%3B AE006295_7 (AE006295) conserved hypothetical%3B E%3D0.038 ddbj:BAB10843.1%3B (AB009053) hypersensitive-induced response%3B E%3D0.88 gene gene4004 http://www.ncbi.nlm.nih.gov/gene/?term=RB7104 RB7106 RB7106 RB7106 3775127 3775240 + hypothetical protein gene gene4005 http://www.ncbi.nlm.nih.gov/gene/?term=RB7106 RB7108 RB7108 RB7108 3775303 3775578 + hypothetical protein gene gene4006 http://www.ncbi.nlm.nih.gov/gene/?term=RB7108 RB7109 RB7109 RB7109 3775546 3775707 - hypothetical protein gene gene4007 http://www.ncbi.nlm.nih.gov/gene/?term=RB7109 RB711 RB711 RB711 380766 381533 - hypothetical protein best DB hits: BLAST: embl:CAC24059.1%3B (AL512981) Hypothetical [Sulfolobus%3B E%3D1e-05 pir:A82418%3B arylesterase VCA0783 [imported] - Vibrio cholerae (group%3B E%3D0.057 swissprot:P54451%3B YQEF_BACSU HYPOTHETICAL 27.6 KD LIPOPROTEIN IN%3B E%3D0.49 COG: VCA0783%3B COG2755 Lysophospholipase L1 and related esterases%3B E%3D0.005 gene gene383 http://www.ncbi.nlm.nih.gov/gene/?term=RB711 RB7110 RB7110 RB7110 3775658 3775975 + hypothetical protein gene gene4008 http://www.ncbi.nlm.nih.gov/gene/?term=RB7110 RB7112 RB7112 pheT pheT 3775972 3778017 - phenylalanyl-tRNA synthetase beta chain PMID: 2991205 best DB hits: BLAST: swissprot:P07395%3B SYFB_ECOLI PHENYLALANYL-TRNA SYNTHETASE BETA%3B E%3D3e-78 gb:AAG56700.1%3B AE005394_9 (AE005394) phenylalanine tRNA%3B E%3D6e-78 embl:CAA23565.1%3B (V00291) phenylalanyl-tRNA synthetase%3B E%3D3e-77 COG: pheT_2%3B COG0072 Phenylalanyl-tRNA synthetase beta subunit%3B E%3D3e-79 PFAM: PF01588%3B tRNA binding domain%3B E%3D2.2e-05 gene gene4009 http://www.ncbi.nlm.nih.gov/gene/?term=RB7112 RB7113 RB7113 RB7113 3777977 3778117 + hypothetical protein gene gene4010 http://www.ncbi.nlm.nih.gov/gene/?term=RB7113 RB7114 RB7114 pheS pheS 3778209 3779252 - phenylalanyl-tRNA synthetase alpha chain PMID: 6317865 best DB hits: BLAST: embl:CAA23564.1%3B (V00291) phenylalanyl-tRNA synthetase%3B E%3D6e-76 gb:AAA51469.1%3B (K02844) phenylalanyl-tRNA synthetase%3B E%3D6e-76 swissprot:P08312%3B SYFA_ECOLI PHENYLALANYL-TRNA SYNTHETASE ALPHA%3B E%3D3e-75 COG: pheS%3B COG0016 Phenylalanyl-tRNA synthetase alpha subunit%3B E%3D3e-76 PFAM: PF02912%3B Aminoacyl tRNA synthetase class%3B E%3D3.9e-08 PF01409%3B tRNA synthetases class II (F)%3B E%3D9.4e-92 gene gene4011 http://www.ncbi.nlm.nih.gov/gene/?term=RB7114 RB7115 RB7115 rplT rplT 3779262 3779618 - 50S ribosomal protein L20 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit gene gene4012 http://www.ncbi.nlm.nih.gov/gene/?term=RB7115 RB7116 RB7116 RB7116 3779586 3779765 + hypothetical protein gene gene4013 http://www.ncbi.nlm.nih.gov/gene/?term=RB7116 RB7117 RB7117 rpmI rpmI 3779777 3780322 - 50S ribosomal protein L35 PMID: 9823893 best DB hits: BLAST: swissprot:Q9ZCV1%3B RL35_RICPR 50S RIBOSOMAL PROTEIN L35 -----%3B E%3D0.55 PFAM: PF01632%3B Ribosomal protein L35%3B E%3D2.6e-15 gene gene4014 http://www.ncbi.nlm.nih.gov/gene/?term=RB7117 RB7120 RB7120 RB7120 3780434 3781474 + hypothetical protein PMID: 10984043 best DB hits: BLAST: pir:A83355%3B hypothetical protein PA2336 [imported] - Pseudomonas%3B E%3D0.022 gene gene4015 http://www.ncbi.nlm.nih.gov/gene/?term=RB7120 RB7123 RB7123 RB7123 3781519 3781962 - response regulator PMID: 10567266 best DB hits: BLAST: pir:D75276%3B response regulator - Deinococcus radiodurans (strain R1)%3B E%3D4e-14 pir:A75522%3B response regulator - Deinococcus radiodurans (strain R1)%3B E%3D8e-14 pir:D75617%3B response regulator - Deinococcus radiodurans (strain R1)%3B E%3D4e-13 COG: DR2420%3B COG0784 CheY-like receiver domains%3B E%3D4e-15 sll0921%3B COG2197 Response regulators consisting of a CheY-like%3B E%3D1e-05 VC1349_3%3B COG0784 CheY-like receiver domains%3B E%3D3e-05 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D5.6e-13 gene gene4016 http://www.ncbi.nlm.nih.gov/gene/?term=RB7123 RB7125 RB7125 RB7125 3781950 3782189 + hypothetical protein gene gene4017 http://www.ncbi.nlm.nih.gov/gene/?term=RB7125 RB7127 RB7127 RB7127 3782200 3782373 - hypothetical protein gene gene4018 http://www.ncbi.nlm.nih.gov/gene/?term=RB7127 RB7128 RB7128 RB7128 3782370 3782627 - hypothetical protein gene gene4019 http://www.ncbi.nlm.nih.gov/gene/?term=RB7128 RB7129 RB7129 RB7129 3782388 3782618 + hypothetical protein gene gene4020 http://www.ncbi.nlm.nih.gov/gene/?term=RB7129 RB713 RB713 RB713 381726 382076 + hypothetical protein gene gene384 http://www.ncbi.nlm.nih.gov/gene/?term=RB713 RB7130 RB7130 feoB feoB 3782615 3784630 + ferrous iron transport protein B PMID: 8890205 best DB hits: BLAST: pir:F82744%3B ferrous iron transport protein B XF0933 [imported] -%3B E%3D7e-89 pir:T03547%3B probable ferrous iron transport protein b - Rhodobacter%3B E%3D3e-84 gb:AAB91270.1%3B (AE001111) iron (II) transporter (feoB-2)%3B E%3D8e-80 COG: XF0933%3B COG0370 Ferrous ion uptake system protein FeoB (predicted%3B E%3D6e-90 PFAM: PF01926%3B GTPase of unknown function%3B E%3D0.029 PF02421%3B Ferrous iron transport protei%3B E%3D1.5e-56 gene gene4021 http://www.ncbi.nlm.nih.gov/gene/?term=RB7130 RB7131 RB7131 RB7131 3784662 3786194 - hypothetical protein PMID: 93377076 best DB hits: PFAM: PF02470%3B mce related protein%3B E%3D1.5e-09 gene gene4022 http://www.ncbi.nlm.nih.gov/gene/?term=RB7131 RB7134 RB7134 RB7134 3786198 3787082 - ABC transporter ATP-binding protein PMID: 10710307 best DB hits: BLAST: pir:G81022%3B ABC transporter ATP-binding protein NMB1966 [imported]%3B E%3D1e-40 pir:B81966%3B probable ABC transport ATP-binding protein NMA0485%3B E%3D2e-40 swissprot:O06784%3B MKL_MYCTU POSSIBLE RIBONUCLEOTIDE TRANSPORT%3B E%3D1e-38 COG: NMB1966%3B COG1127 Uncharacterized ABC-type transport system%2C ATPase%3B E%3D1e-41 PA2350%3B COG1135 Uncharacterized ABC-type transport system ATPase%3B E%3D1e-32 XF0421%3B COG1127 Uncharacterized ABC-type transport system%2C ATPase%3B E%3D3e-32 PFAM: PF00006%3B ATP synthase alpha/beta family%2C n%3B E%3D0.092 PF00485%3B Phosphoribulokinase / Uridine kin%3B E%3D0.42 PF00005%3B ABC transporter%3B E%3D1.2e-54 gene gene4023 http://www.ncbi.nlm.nih.gov/gene/?term=RB7134 RB7135 RB7135 RB7135 3787082 3787972 - ABC transporter permease PMID: 10984043 best DB hits: BLAST: pir:G71718%3B hypothetical protein RP096 - Rickettsia prowazekii%3B E%3D4e-38 pir:E70331%3B conserved hypothetical protein aq_355 - Aquifex aeolicus%3B E%3D6e-37 pir:S74989%3B hypothetical protein slr1045 - Synechocystis sp. (strain%3B E%3D5e-35 COG: RP096%3B COG0767 Permease component of an ABC-transporter%3B E%3D3e-39 PFAM: PF02405%3B Domain of unknown function DUF140%3B E%3D4.8e-79 gene gene4024 http://www.ncbi.nlm.nih.gov/gene/?term=RB7135 RB7136 RB7136 RB7136 3787932 3788138 + hypothetical protein gene gene4025 http://www.ncbi.nlm.nih.gov/gene/?term=RB7136 RB7137 RB7137 RB7137 3788086 3788256 + hypothetical protein gene gene4026 http://www.ncbi.nlm.nih.gov/gene/?term=RB7137 RB7138 RB7138 RB7138 3788253 3790112 - hypothetical protein PMID: 10731132 best DB hits: BLAST: gb:AAF56315.1%3B (AE003748) CG13625 gene product [Drosophila%3B E%3D0.27 gene gene4027 http://www.ncbi.nlm.nih.gov/gene/?term=RB7138 RB714 RB714 RB714 381937 384627 + chromosome segregation protein PMID: 11016950 best DB hits: BLAST: gb:AAG18913.1%3B (AE004993) chromosome segregation%3B Smc1%3B E%3D0.010 COG: VNG0342G%3B COG1196 Chromosome segregation ATPases%3B E%3D0.001 gene gene385 http://www.ncbi.nlm.nih.gov/gene/?term=RB714 RB7144 RB7144 RB7144 3790286 3791179 + xylanase/chitin deacetylase PMID: 9384377 best DB hits: BLAST: pir:A70081%3B conserved hypothetical protein yxkH - Bacillus subtilis%3B E%3D2e-10 pir:A82350%3B conserved hypothetical protein VC0239 [imported] -%3B E%3D6e-09 pir:D82751%3B conserved hypothetical protein XF0878 [imported] -%3B E%3D2e-08 COG: BS_yxkH%3B COG0726 Predicted xylanase/chitin deacetylase%3B E%3D2e-11 PFAM: PF01522%3B Polysaccharide deacetylase%3B E%3D0.036 gene gene4028 http://www.ncbi.nlm.nih.gov/gene/?term=RB7144 RB7146 RB7146 RB7146 3791176 3792408 + hexosyltransferase PMID: 10360571 best DB hits: BLAST: pir:E72354%3B probable hexosyltransferase (EC 2.4.1.-) TM0622 -%3B E%3D2e-24 gb:AAD50490.1%3B AF172324_8 (AF172324) WbnE [Escherichia coli]%3B E%3D5e-19 pir:E70036%3B capsular polysaccharide biosynthesis homolog yveP -%3B E%3D1e-18 COG: TM0622%3B COG0438 Predicted glycosyltransferases%3B E%3D2e-25 PFAM: PF00534%3B Glycosyl transferases group 1%3B E%3D1.8e-41 gene gene4029 http://www.ncbi.nlm.nih.gov/gene/?term=RB7146 RB7147 RB7147 RB7147 3792422 3793027 + acyltransferase PMID: 10984043 best DB hits: BLAST: pir:B83329%3B probable acyltransferase PA2537 [imported] - Pseudomonas%3B E%3D1e-38 gb:AAK04085.1%3B (AE006236) unknown [Pasteurella multocida]%3B E%3D3e-33 pir:A82139%3B conserved hypothetical protein VC1937 [imported] -%3B E%3D3e-13 COG: PA2537%3B COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase%3B E%3D1e-39 PFAM: PF01553%3B Acyltransferase%3B E%3D6.5e-16 gene gene4030 http://www.ncbi.nlm.nih.gov/gene/?term=RB7147 RB7149 RB7149 RB7149 3793138 3793926 + signal peptide gene gene4031 http://www.ncbi.nlm.nih.gov/gene/?term=RB7149 RB7151 RB7151 RB7151 3793943 3795199 - hypothetical protein gene gene4032 http://www.ncbi.nlm.nih.gov/gene/?term=RB7151 RB7152 RB7152 RB7152 3795199 3796536 - secreted glycosyl hydrolase PMID: 8843436 best DB hits: BLAST: pir:T34929%3B hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces%3B E%3D5e-09 embl:CAB94634.1%3B (AL359215) secreted glycosyl hydrolase.%3B E%3D3e-07 PFAM: PF01302%3B CAP-Gly domain%3B E%3D0.33 gene gene4033 http://www.ncbi.nlm.nih.gov/gene/?term=RB7152 RB7157 RB7157 RB7157 3796569 3797810 - hypothetical protein best DB hits: BLAST: swissprot:Q50695%3B YM67_MYCTU HYPOTHETICAL 46.1 KDA PROTEIN RV2267C%3B E%3D3e-72 pir:B70675%3B hypothetical protein Rv3529c - Mycobacterium%3B E%3D0.001 pir:T31307%3B type I fatty acid synthase homolog - Cryptosporidium%3B E%3D0.17 gene gene4034 http://www.ncbi.nlm.nih.gov/gene/?term=RB7157 RB716 RB716 RB716 384519 386105 + related to sulfatase best DB hits: BLAST: gb:AAK03766.1%3B (AE006204) unknown [Pasteurella multocida]%3B E%3D0.34 gene gene386 http://www.ncbi.nlm.nih.gov/gene/?term=RB716 RB7161 RB7161 RB7161 3798000 3798320 + hypothetical protein best DB hits: BLAST: pir:D75036%3B hypothetical protein PAB3319 - Pyrococcus abyssi (strain%3B E%3D3e-24 pir:C71127%3B hypothetical protein PHS025 - Pyrococcus horikoshii%3B E%3D1e-17 gb:AAB90424.1%3B (AE001047) A. fulgidus predicted coding region%3B E%3D9e-17 COG: PAB3319%3B COG1694 Predicted pyrophosphatase%3B E%3D3e-25 gene gene4035 http://www.ncbi.nlm.nih.gov/gene/?term=RB7161 RB7162 RB7162 RB7162 3798275 3800659 + hypothetical protein gene gene4036 http://www.ncbi.nlm.nih.gov/gene/?term=RB7162 RB7166 RB7166 RB7166 3800705 3801643 + ABC transporter ATP-binding protein PMID: 9389475 best DB hits: BLAST: pir:S74476%3B ABC-type transport protein slr1113 - Synechocystis sp.%3B E%3D3e-48 pir:S76626%3B ABC-type transport protein sll0489 - Synechocystis sp.%3B E%3D2e-42 gb:AAB90107.1%3B (AE001025) ABC transporter ATP-binding protein%3B E%3D2e-40 COG: slr1113%3B COG1131 ABC-type multidrug transport system%2C ATPase%3B E%3D2e-49 BH1054_2%3B COG0842 Permease component of an ABC-transporter%3B E%3D6e-41 PA3672%3B COG1131 ABC-type multidrug transport system%2C ATPase%3B E%3D2e-39 PFAM: PF00005%3B ABC transporter%3B E%3D9.2e-45 gene gene4037 http://www.ncbi.nlm.nih.gov/gene/?term=RB7166 RB7167 RB7167 fabZ fabZ 3801693 3802277 + hydroxymyristoyl-(acyl carrier protein) dehydratase PMID: 7806516 best DB hits: BLAST: gb:AAK04875.1%3B AE006311_6 (AE006311)%3B E%3D3e-11 pir:D70065%3B (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase%3B E%3D5e-11 gb:AAF98278.1%3B AF197933_8 (AF197933) beta-hydroxyacyl-ACP%3B E%3D9e-11 COG: BS_ywpB%3B COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier%3B E%3D5e-12 PFAM: PF01377%3B Thioester dehydrase%3B E%3D6e-11 gene gene4038 http://www.ncbi.nlm.nih.gov/gene/?term=RB7167 RB7168 RB7168 acpP acpP 3802304 3802693 + acyl carrier protein PMID: 1556094 best DB hits: BLAST: gb:AAC35700.1%3B (AF041468) acyl carrier protein [Guillardia%3B E%3D2e-06 pir:C41609%3B acyl carrier protein - Cryptomonas sp. chloroplast%3B E%3D3e-06 swissprot:P20804%3B ACP_SYNY3 ACYL CARRIER PROTEIN (ACP) -----%3B E%3D1e-05 COG: ssl2084%3B COG0236 Acyl carrier protein%3B E%3D1e-06 PFAM: PF00550%3B Phosphopantetheine attachment site%3B E%3D3.6e-07 gene gene4039 http://www.ncbi.nlm.nih.gov/gene/?term=RB7168 RB7169 RB7169 fabZ fabZ 3802650 3803231 + hydroxymyristoyl-(acyl carrier protein) dehydratase PMID: 7806516 best DB hits: BLAST: ddbj:BAB07454.1%3B (AP001519) hydroxymyristoyl-(acyl carrier%3B E%3D4e-09 pir:A70305%3B (3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase%3B E%3D5e-09 pir:H71826%3B (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase%3B E%3D7e-09 COG: BH3735%3B COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier%3B E%3D4e-10 PFAM: PF01377%3B Thioester dehydrase%3B E%3D0.00031 gene gene4040 http://www.ncbi.nlm.nih.gov/gene/?term=RB7169 RB7171 RB7171 fabF fabF 3803238 3804527 + 3-oxoacyl-ACP synthase PMID: 7768872 best DB hits: BLAST: ddbj:BAB06601.1%3B (AP001517) 3-oxoacyl-(acyl-carrier protein)%3B E%3D4e-93 pir:G69842%3B 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41)%3B E%3D5e-91 pir:S77464%3B 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41)%3B E%3D6e-88 COG: BH2882%3B COG0304 3-oxoacyl-(acyl-carrier-protein) synthase I%3B E%3D4e-94 PFAM: PF00109%3B Beta-ketoacyl synthase%2C N-ter%3B E%3D6.3e-46 PF02801%3B Beta-ketoacyl synthase%2C C-ter%3B E%3D5.1e-73 gene gene4041 http://www.ncbi.nlm.nih.gov/gene/?term=RB7171 RB7172 RB7172 RB7172 3804503 3804709 + hypothetical protein gene gene4042 http://www.ncbi.nlm.nih.gov/gene/?term=RB7172 RB7173 RB7173 RB7173 3804665 3805858 - polyprenyl synthetase PMID: 2198286 best DB hits: BLAST: gb:AAD47627.1%3B (AF153713) octylprenyl diphosphate synthase-like%3B E%3D6e-40 pir:C83075%3B octaprenyl-diphosphate synthase PA4569 [imported] -%3B E%3D8e-40 ddbj:BAA22867.1%3B (AB001997) solanesyl diphosphate synthase%3B E%3D7e-37 COG: PA4569%3B COG0142 Geranylgeranyl pyrophosphate synthase%3B E%3D7e-41 PFAM: PF00348%3B Polyprenyl synthetase%3B E%3D1.4e-49 gene gene4043 http://www.ncbi.nlm.nih.gov/gene/?term=RB7173 RB7175 RB7175 MoaC MoaC 3805958 3806569 - molybdenum cofactor biosynthesis protein C PMID: 8361352 best DB hits: BLAST: pir:T46857%3B molybdenum cofactor biosynthesis protein C [imported] -%3B E%3D4e-23 swissprot:P30747%3B MOAC_ECOLI MOLYBDENUM COFACTOR BIOSYNTHESIS%3B E%3D8e-23 pdb:1EKR%3B A Chain A%2C Moac Protein From E. Coli%3B E%3D1e-22 COG: moaC%3B COG0315 Molybdenum cofactor biosynthesis enzyme%3B E%3D8e-24 PFAM: PF01967%3B MoaC family%3B E%3D4.4e-71 gene gene4044 http://www.ncbi.nlm.nih.gov/gene/?term=RB7175 RB7176 RB7176 RB7176 3806643 3806783 - hypothetical protein gene gene4045 http://www.ncbi.nlm.nih.gov/gene/?term=RB7176 RB7177 RB7177 RB7177 3806784 3806891 - hypothetical protein gene gene4046 http://www.ncbi.nlm.nih.gov/gene/?term=RB7177 RB7178 RB7178 RB7178 3806924 3807061 + hypothetical protein gene gene4047 http://www.ncbi.nlm.nih.gov/gene/?term=RB7178 RB718 RB718 RB718 386095 386211 - hypothetical protein gene gene387 http://www.ncbi.nlm.nih.gov/gene/?term=RB718 RB7180 RB7180 RB7180 3807031 3807345 - hypothetical protein gene gene4048 http://www.ncbi.nlm.nih.gov/gene/?term=RB7180 RB7184 RB7184 RB7184 3807517 3808089 + two-component regulatory protein best DB hits: BLAST: gb:AAD12184.1%3B (U57900) utilizing regulatory protein tutC%3B E%3D4e-04 pir:S76529%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D0.002 embl:CAB88489.1%3B (AL353816) two-component systen%3B E%3D0.003 COG: sll0396%3B COG0745 Response regulators consisting of a CheY-like%3B E%3D2e-04 BB0419_1%3B COG0784 CheY-like receiver domains%3B E%3D8e-04 slr0115%3B COG0745 Response regulators consisting of a CheY-like%3B E%3D8e-04 PFAM: PF00072%3B Response regulator receiver do%3B E%3D0.027 gene gene4049 http://www.ncbi.nlm.nih.gov/gene/?term=RB7184 RB7185 RB7185 RB7185 3808134 3808352 - hypothetical protein gene gene4050 http://www.ncbi.nlm.nih.gov/gene/?term=RB7185 RB7186 RB7186 RB7186 3808152 3808364 + hypothetical protein gene gene4051 http://www.ncbi.nlm.nih.gov/gene/?term=RB7186 RB7188 RB7188 RB7188 3808328 3808534 + hypothetical protein gene gene4052 http://www.ncbi.nlm.nih.gov/gene/?term=RB7188 RB719 RB719 RB719 386206 386481 + hypothetical protein gene gene388 http://www.ncbi.nlm.nih.gov/gene/?term=RB719 RB7190 RB7190 RB7190 3808531 3810435 + regulatory protein PMID: 10360571 best DB hits: BLAST: pir:C72374%3B hypothetical protein TM0467 - Thermotoga maritima%3B E%3D3e-16 embl:CAB56681.1%3B (AL121596) hypothetical protein SCF51A.29c%3B E%3D2e-14 embl:CAC01561.1%3B (AL391039) conserved hypothetical protein%3B E%3D4e-14 COG: TM0467%3B COG2208 Serine phosphatase RsbU%2C regulator of sigma subunit%3B E%3D3e-17 Rv1827%3B COG1716 FHA-domain-containing proteins%3B E%3D1e-09 slr1860_2%3B COG2208 Serine phosphatase RsbU%2C regulator of sigma%3B E%3D4e-09 PFAM: PF00498%3B FHA domain%3B E%3D1.4e-20 PF01590%3B GAF domain%3B E%3D3.5e-17 gene gene4053 http://www.ncbi.nlm.nih.gov/gene/?term=RB7190 RB7193 RB7193 RB7193 3810464 3811585 + oxidoreductase PMID: 9477341 best DB hits: BLAST: pir:T04014%3B hypothetical protein F17A8.20 - Arabidopsis thaliana%3B E%3D4e-45 pir:T14319%3B protein AX110P - carrot ----- ddbj: BAA03455.1%3B E%3D2e-35 embl:CAB55380.1%3B (AL117263) oxidoreductase [Leishmania%3B E%3D6e-35 COG: BH3843%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D2e-26 PFAM: PF01408%3B Oxidoreductase%2C NAD-bin%3B E%3D0.0035 PF02894%3B Oxidoreductase%2C C-termi%3B E%3D0.11 gene gene4054 http://www.ncbi.nlm.nih.gov/gene/?term=RB7193 RB7194 RB7194 RB7194 3811643 3812563 - hypothetical protein gene gene4055 http://www.ncbi.nlm.nih.gov/gene/?term=RB7194 RB7195 RB7195 RB7195 3812570 3812842 - hypothetical protein gene gene4056 http://www.ncbi.nlm.nih.gov/gene/?term=RB7195 RB7196 RB7196 RB7196 3812895 3813479 + hypothetical protein PMID: 8905231 best DB hits: BLAST: pir:S74786%3B hypothetical protein slr1083 - Synechocystis sp. (strain%3B E%3D3e-16 embl:CAA77141.1%3B (Y18353) hypothetical protein [Thermus%3B E%3D2e-14 embl:CAA71549.1%3B (Y10525) arg-ORF1 [Thermus thermophilus]%3B E%3D2e-14 gene gene4057 http://www.ncbi.nlm.nih.gov/gene/?term=RB7196 RB7198 RB7198 RB7198 3813552 3813956 + hypothetical protein PMID: 8905231 best DB hits: BLAST: pir:S74550%3B hypothetical protein slr0240 - Synechocystis sp. (strain%3B E%3D9e-07 swissprot:O07127%3B YPTY_LACSK HYPOTHETICAL 16.5 KD PROTEIN IN PTSI%3B E%3D3e-04 swissprot:Q47839%3B COPY_ENTHR COPAB ATPASES METAL-FIST TYPE%3B E%3D0.052 gene gene4058 http://www.ncbi.nlm.nih.gov/gene/?term=RB7198 RB72 RB72 RB72 28138 28674 + signal peptide gene gene40 http://www.ncbi.nlm.nih.gov/gene/?term=RB72 RB720 RB720 RB720 386468 387808 - N-acetylgalactosamine-6-sulfatase PMID: 20164110 best DB hits: BLAST: gb:AAF63858.1%3B (AF112242) N-acetylgalactosamine-6-sulfate%3B E%3D2e-23 ddbj:BAA04535.1%3B (D17629) N-acetylgalactosamine 6-sulfate%3B E%3D1e-21 gb:AAF58475.1%3B (AE003821) CG8646 gene product [Drosophila%3B E%3D3e-19 COG: yidJ%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D3e-15 VCA0802%3B COG1368 Phosphoglycerol transferase and related proteins%2C%3B E%3D3e-07 Rv0663%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D5e-07 PFAM: PF00884%3B Sulfatase%3B E%3D4.9e-29 gene gene389 http://www.ncbi.nlm.nih.gov/gene/?term=RB720 RB7200 RB7200 RB7200 3813928 3817935 + penicillin resistance regulatory protein PMID: 3040663 PMID: 3260234 PMID: 2404938 best DB hits: BLAST: swissprot:P12287%3B BLAR_BACLI REGULATORY PROTEIN BLAR1 -----%3B E%3D1e-12 pir:I39942%3B penicillinase antirepressor penJ - Bacillus%3B E%3D1e-11 swissprot:P26597%3B MECR_STAEP METHICILLIN RESISTANCE MECR1 PROTEIN%3B E%3D6e-05 PFAM: PF02687%3B Predicted permease%3B E%3D0.51 gene gene4059 http://www.ncbi.nlm.nih.gov/gene/?term=RB7200 RB7201 RB7201 RB7201 3817957 3819441 - exinuclease ABC subunit C PMID: 3515318 PMID: 6330676 best DB hits: BLAST: swissprot:P07028%3B UVRC_ECOLI EXCINUCLEASE ABC SUBUNIT C%3B E%3D5e-20 ddbj:BAA15733.1%3B (D90832) Excinuclease ABC subunit C.%3B E%3D5e-20 pir:G81845%3B excinuclease ABC subunit C NMA1540 [imported] -%3B E%3D6e-20 COG: NMB1326%3B COG0322 Nuclease subunit of the excinuclease complex%3B E%3D2e-20 PFAM: PF01541%3B Endo/excinuclease amino terminal%3B E%3D1.1e-10 PF02151%3B UvrB/uvrC motif%3B E%3D0.00034 gene gene4060 http://www.ncbi.nlm.nih.gov/gene/?term=RB7201 RB7203 RB7203 RB7203 3819614 3820057 + hypothetical protein gene gene4061 http://www.ncbi.nlm.nih.gov/gene/?term=RB7203 RB7205 RB7205 RB7205 3820027 3821178 + hypothetical protein PMID: 12024217 gene gene4062 http://www.ncbi.nlm.nih.gov/gene/?term=RB7205 RB7206 RB7206 thiC thiC 3821302 3822627 + thiamine biosynthesis protein ThiC required for the synthesis of the hydromethylpyrimidine moiety of thiamine gene gene4063 http://www.ncbi.nlm.nih.gov/gene/?term=RB7206 RB7207 RB7207 RB7207 3822537 3822896 + hypothetical protein gene gene4064 http://www.ncbi.nlm.nih.gov/gene/?term=RB7207 RB7208 RB7208 RB7208 3822824 3823360 + hypothetical protein best DB hits: PFAM: PF02151%3B UvrB/uvrC motif%3B E%3D5.6e-08 gene gene4065 http://www.ncbi.nlm.nih.gov/gene/?term=RB7208 RB7209 RB7209 RB7209 3823406 3824188 + signal peptide gene gene4066 http://www.ncbi.nlm.nih.gov/gene/?term=RB7209 RB7210 RB7210 phoU phoU 3824196 3824885 - phosphate transporter PhoU PMID: 98196666 PMID: 9537320 best DB hits: BLAST: swissprot:O67053%3B PHOU_AQUAE PHOSPHATE TRANSPORT SYSTEM PROTEIN%3B E%3D1e-30 swissprot:Q51547%3B PHOU_PSEAE PHOSPHATE TRANSPORT SYSTEM PROTEIN%3B E%3D6e-23 swissprot:Q9Z410%3B PHOU_PSEPU PHOSPHATE TRANSPORT SYSTEM PROTEIN%3B E%3D4e-22 COG: aq_906%3B COG0704 Phosphate uptake regulator%3B E%3D1e-31 gene gene4067 http://www.ncbi.nlm.nih.gov/gene/?term=RB7210 RB7211 RB7211 pstB pstB 3824962 3825810 - phosphate ABC transporter ATP-binding protein PMID: 96337999 PMID: 8688087 best DB hits: BLAST: swissprot:Q58418%3B PSTB_METJA PROBABLE PHOSPHATE TRANSPORT%3B E%3D2e-84 swissprot:P07655%3B PSTB_ECOLI PHOSPHATE TRANSPORT ATP-BINDING%3B E%3D3e-82 ddbj:BAA22864.1%3B (D89963) peripheral membrane protein%3B E%3D6e-81 COG: MJ1012%3B COG1117 ABC-type phosphate transport system%2C ATPase%3B E%3D2e-85 pstB%3B COG1117 ABC-type phosphate transport system%2C ATPase component%3B E%3D3e-83 PA5366%3B COG1117 ABC-type phosphate transport system%2C ATPase%3B E%3D7e-82 PFAM: PF00005%3B ABC transporter%3B E%3D3.1e-55 gene gene4068 http://www.ncbi.nlm.nih.gov/gene/?term=RB7211 RB7212 RB7212 pstA pstA 3825820 3827088 - phosphate ABC transporter (permease) PMID: 99411980 best DB hits: BLAST: ddbj:BAB06711.1%3B (AP001517) phosphate ABC transporter (permease)%3B E%3D1e-26 gb:AAB89888.1%3B (AE001010) phosphate ABC transporter%2C permease%3B E%3D1e-25 pir:D82504%3B phosphate ABC transporter%2C permease VCA0072%3B E%3D6e-17 COG: BH2992%3B COG0581 ABC-type phosphate transport system%2C permease%3B E%3D9e-28 MTH1729%3B COG0573 ABC-type phosphate transport system%2C permease%3B E%3D1e-16 sll0682%3B COG0581 ABC-type phosphate transport system%2C permease%3B E%3D4e-16 PFAM: PF00060%3B Ligand-gated ion channel%3B E%3D0.035 PF00528%3B Binding-protein-dependent transpor%3B E%3D1.1e-15 gene gene4069 http://www.ncbi.nlm.nih.gov/gene/?term=RB7212 RB7213 RB7213 pstC pstC 3827123 3828070 - phosphate ABC transporter (permease) PMID: 99411980 best DB hits: BLAST: ddbj:BAB06712.1%3B (AP001517) phosphate ABC transporter (permease)%3B E%3D2e-59 gb:AAG18997.1%3B (AE004999) phosphate ABC transporter permease%3B E%3D4e-48 gb:AAB89889.1%3B (AE001010) phosphate ABC transporter%2C permease%3B E%3D1e-46 COG: BH2993%3B COG0573 ABC-type phosphate transport system%2C permease%3B E%3D2e-60 VCA0072%3B COG0581 ABC-type phosphate transport system%2C permease%3B E%3D4e-22 HI1382%3B COG0573 ABC-type phosphate transport system%2C permease%3B E%3D6e-22 PFAM: PF00528%3B Binding-protein-dependent tran%3B E%3D4.3e-11 gene gene4070 http://www.ncbi.nlm.nih.gov/gene/?term=RB7213 RB7215 RB7215 sphX sphX 3828184 3829116 - phosphate ABC transporter%2C periplasmic phosphate-binding protein PMID: 95075296 PMID: 7741855 best DB hits: BLAST: swissprot:P39665%3B SPHX_SYNP7 SPHX PROTEIN PRECURSOR ----- pir:%3B E%3D9e-59 swissprot:Q55200%3B SPHX_SYNY3 SPHX PROTEIN HOMOLOG PRECURSOR%3B E%3D4e-56 gb:AAB89890.1%3B (AE001010) phosphate ABC transporter%2C periplasmic%3B E%3D3e-53 COG: sll0679%3B COG0226 ABC-type phosphate transport system%2C periplasmic%3B E%3D4e-57 PFAM: PF01449%3B Phosphate-binding protein%3B E%3D2.2e-64 gene gene4071 http://www.ncbi.nlm.nih.gov/gene/?term=RB7215 RB7217 RB7217 RB7217 3829178 3829492 - hypothetical protein gene gene4072 http://www.ncbi.nlm.nih.gov/gene/?term=RB7217 RB7219 RB7219 RB7219 3829476 3829730 - hypothetical protein gene gene4073 http://www.ncbi.nlm.nih.gov/gene/?term=RB7219 RB7220 RB7220 cstA cstA 3829745 3831649 - carbon starvation-induced protein PMID: 99411980 best DB hits: BLAST: ddbj:BAB05512.1%3B (AP001513) carbon starvation-induced protein%3B E%3D3e-82 swissprot:O67304%3B CSTA_AQUAE CARBON STARVATION PROTEIN A HOMOLOG%3B E%3D5e-65 pir:E75032%3B carbon starvation protein A homolog PAB1554 [similarity]%3B E%3D1e-53 COG: BH1793%3B COG1966 Carbon starvation protein%2C predicted membrane%3B E%3D3e-83 yjiY%3B COG1966 Carbon starvation protein%2C predicted membrane protein%3B E%3D2e-47 jhp1095%3B COG1966 Carbon starvation protein%2C predicted membrane%3B E%3D3e-47 PFAM: PF02554%3B Carbon starvation protein CstA%3B E%3D2.2e-104 gene gene4074 http://www.ncbi.nlm.nih.gov/gene/?term=RB7220 RB7221 RB7221 RB7221 3831646 3832041 - hypothetical protein gene gene4075 http://www.ncbi.nlm.nih.gov/gene/?term=RB7221 RB7223 RB7223 trx trx 3832051 3833184 + thioredoxin reductase best DB hits: BLAST: gb:AAB64789.1%3B (U28372) Similar to Thioredoxin reductase (Swiss%3B E%3D2e-76 swissprot:P51978%3B TRXB_NEUCR THIOREDOXIN REDUCTASE ----- pir:%3B E%3D5e-75 gb:AAB68856.1%3B (U00059) Yhr106wp [Saccharomyces cerevisiae]%3B E%3D2e-74 COG: YDR353w%3B COG0492 Thioredoxin reductase/alkyl hydroperoxide reductase%3B E%3D1e-77 VNG1259G%3B COG0492 Thioredoxin reductase/alkyl hydroperoxide%3B E%3D5e-53 BS_trxB%3B COG0492 Thioredoxin reductase/alkyl hydroperoxide reductase%3B E%3D4e-48 PFAM: PF02032%3B Phytoene dehydrogenase related%3B E%3D0.056 PF00070%3B Pyridine nucleotide-disulphide%3B E%3D3.1e-09 gene gene4076 http://www.ncbi.nlm.nih.gov/gene/?term=RB7223 RB7224 RB7224 RB7224 3833201 3833392 + hypothetical protein gene gene4077 http://www.ncbi.nlm.nih.gov/gene/?term=RB7224 RB7225 RB7225 RB7225 3833484 3834713 - signal peptide gene gene4078 http://www.ncbi.nlm.nih.gov/gene/?term=RB7225 RB7228 RB7228 RB7228 3834777 3836258 - hypothetical protein gene gene4079 http://www.ncbi.nlm.nih.gov/gene/?term=RB7228 RB7229 RB7229 RB7229 3836255 3839446 - signal peptide gene gene4080 http://www.ncbi.nlm.nih.gov/gene/?term=RB7229 RB723 RB723 RB723 388051 388233 + hypothetical protein gene gene390 http://www.ncbi.nlm.nih.gov/gene/?term=RB723 RB7232 RB7232 RB7232 3839521 3840168 - glutamine ABC transporter ATP-binding protein best DB hits: BLAST: pir:G69192%3B ABC transporter (glutamine transport ATP-binding%3B E%3D5e-39 pir:A82184%3B ABC transporter ATP-binding protein VC1568 [imported] -%3B E%3D5e-38 pir:H72342%3B ABC transporter ATP-binding protein - Thermotoga%3B E%3D6e-38 COG: MTH696%3B COG1136 ABC-type (unclassified) transport system%2C ATPase%3B E%3D5e-40 PFAM: PF00005%3B ABC transporter%3B E%3D6.5e-58 gene gene4081 http://www.ncbi.nlm.nih.gov/gene/?term=RB7232 RB7233 RB7233 RB7233 3840182 3840385 + hypothetical protein gene gene4082 http://www.ncbi.nlm.nih.gov/gene/?term=RB7233 RB7235 RB7235 RB7235 3840505 3841299 + signal peptide gene gene4083 http://www.ncbi.nlm.nih.gov/gene/?term=RB7235 RB7237 RB7237 mutS mutS 3841348 3844023 + DNA mismatch repair protein MutS This protein performs the mismatch recognition step during the DNA repair process gene gene4084 http://www.ncbi.nlm.nih.gov/gene/?term=RB7237 RB7238 RB7238 RB7238 3844063 3845838 - hypothetical protein gene gene4085 http://www.ncbi.nlm.nih.gov/gene/?term=RB7238 RB724 RB724 RB724 388252 389658 - heparan N-sulfatase PMID: 11181566 best DB hits: BLAST: gb:AAG41945.1%3B AF304053_1 (AF304053) heparan N-sulfatase [Mus%3B E%3D1e-29 gb:AAG41946.1%3B AF304054_1 (AF304054) mutant heparan N-sulfatase%3B E%3D1e-29 gb:AAF29467.1%3B (AF156255) N-sulfoglucosamine sulfohydrolase [Mus%3B E%3D1e-29 COG: Rv0296c%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D3e-25 PFAM: PF00884%3B Sulfatase%3B E%3D1e-29 gene gene391 http://www.ncbi.nlm.nih.gov/gene/?term=RB724 RB7240 RB7240 RB7240 3845897 3849013 + hypothetical protein best DB hits: BLAST: gb:AAD51954.1%3B (AF170528) glycoprotein IIb%3B GPIIb [Oryctolagus%3B E%3D0.85 gene gene4086 http://www.ncbi.nlm.nih.gov/gene/?term=RB7240 RB7243 RB7243 RB7243 3849010 3849603 + hypothetical protein best DB hits: BLAST: gb:AAB40278.1%3B (U82664) hypothetical protein [Escherichia coli]%3B E%3D6e-04 gene gene4087 http://www.ncbi.nlm.nih.gov/gene/?term=RB7243 RB7244 RB7244 ppiB ppiB 3849148 3849579 - peptidylprolyl isomerase PMID: 9317025 best DB hits: BLAST: pir:H82708%3B peptidyl-prolyl cis-trans isomerase XF1212 [imported] -%3B E%3D7e-34 swissprot:O66105%3B PPIB_TREPA PROBABLE PEPTIDYL-PROLYL CIS-TRANS%3B E%3D8e-34 pir:E75543%3B peptidylprolyl isomerase (EC 5.2.1.8) DR0237%3B E%3D1e-30 COG: XF1212%3B COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) -%3B E%3D7e-35 PFAM: PF00160%3B Cyclophilin type peptidyl-proly%3B E%3D1.1e-67 gene gene4088 http://www.ncbi.nlm.nih.gov/gene/?term=RB7244 RB7245 RB7245 RB7245 3849661 3850356 - hypothetical protein gene gene4089 http://www.ncbi.nlm.nih.gov/gene/?term=RB7245 RB7246 RB7246 RB7246 3850393 3850545 + hypothetical protein gene gene4090 http://www.ncbi.nlm.nih.gov/gene/?term=RB7246 RB7247 RB7247 glnII glnII 3850538 3851638 + glutamine synthetase II PMID: 2575672 PMID: 1357539 best DB hits: BLAST: swissprot:P04772%3B GLN2_BRAJA GLUTAMINE SYNTHETASE II%3B E%3D1e-103 swissprot:Q02154%3B GLN2_RHILP GLUTAMINE SYNTHETASE II%3B E%3D1e-99 swissprot:P45626%3B GLN2_RHIME GLUTAMINE SYNTHETASE II%3B E%3D9e-97 COG: YPR035w%3B COG0174 Glutamine synthase%3B E%3D5e-83 PFAM: PF00120%3B Glutamine synthetase%3B E%3D3.6e-133 gene gene4091 http://www.ncbi.nlm.nih.gov/gene/?term=RB7247 RB7248 RB7248 RB7248 3851674 3851874 + hypothetical protein gene gene4092 http://www.ncbi.nlm.nih.gov/gene/?term=RB7248 RB7249 RB7249 RB7249 3851887 3852075 + signal peptide gene gene4093 http://www.ncbi.nlm.nih.gov/gene/?term=RB7249 RB7251 RB7251 RB7251 3852199 3853488 - signal peptide best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene4094 http://www.ncbi.nlm.nih.gov/gene/?term=RB7251 RB7253 RB7253 RB7253 3853668 3853847 + hypothetical protein gene gene4095 http://www.ncbi.nlm.nih.gov/gene/?term=RB7253 RB7254 RB7254 RB7254 3853826 3855910 + mu-protocadherin PMID: 10801787 best DB hits: BLAST: gb:AAF70456.1%3B AF221952_1 (AF221952) mu-protocadherin [Rattus%3B E%3D0.027 gb:AAF46574.1%3B (AE003450) CG2908 gene product [Drosophila%3B E%3D0.041 gb:AAG16897.1%3B AF182040_1 (AF182040) LAG protein [Mus musculus]%3B E%3D0.29 gene gene4096 http://www.ncbi.nlm.nih.gov/gene/?term=RB7254 RB7259 RB7259 ileS ileS 3855873 3859514 + isoleucyl-tRNA synthetase PMID: 97000351 best DB hits: BLAST: pir:T34946%3B probable isoleucyl-tRNA synthetase - Streptomyces%3B E%3D0.0 pir:C81552%3B isoleucyl-tRNA synthetase CP0665 [imported] -%3B E%3D0.0 swissprot:Q9Z972%3B SYI_CHLPN ISOLEUCYL-TRNA SYNTHETASE%3B E%3D0.0 COG: CPn0109%3B COG0060 Isoleucyl-tRNA synthetase%3B E%3D0.0 PFAM: PF00133%3B tRNA synthetases class I (I%2C L%2C M%3B E%3D1.8e-132 gene gene4097 http://www.ncbi.nlm.nih.gov/gene/?term=RB7259 RB7260 RB7260 pur3 pur3 3859511 3860110 + phosphoribosylglycinamide formyltransferase PMID: 95004650 best DB hits: BLAST: embl:CAA52779.2%3B (X74767) phosphoribosylglycinamide%3B E%3D1e-25 swissprot:P52422%3B PUR3_ARATH PHOSPHORIBOSYLGLYCINAMIDE%3B E%3D1e-25 pir:T11574%3B phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)%3B E%3D2e-25 COG: aq_857%3B COG0299 Folate-dependent phosphoribosylglycinamide%3B E%3D1e-23 VC1992%3B COG0788 Formyltetrahydrofolate hydrolase%3B E%3D9e-12 Cj0187c%3B COG0299 Folate-dependent phosphoribosylglycinamide%3B E%3D4e-11 PFAM: PF00551%3B Formyl transferase%3B E%3D2.9e-41 gene gene4098 http://www.ncbi.nlm.nih.gov/gene/?term=RB7260 RB7262 RB7262 RB7262 3860241 3860393 + hypothetical protein gene gene4099 http://www.ncbi.nlm.nih.gov/gene/?term=RB7262 RB7263 RB7263 RB7263 3860323 3862392 + hypothetical protein PMID: 98196666 best DB hits: BLAST: pir:D70370%3B hypothetical protein aq_808 - Aquifex aeolicus -----%3B E%3D1e-05 PFAM: PF00430%3B ATP synthase B/B' CF(0)%3B E%3D0.87 gene gene4100 http://www.ncbi.nlm.nih.gov/gene/?term=RB7263 RB7267 RB7267 RB7267 3862389 3864095 + signal peptide gene gene4101 http://www.ncbi.nlm.nih.gov/gene/?term=RB7267 RB7271 RB7271 RB7271 3864352 3864549 - signal peptide gene gene4102 http://www.ncbi.nlm.nih.gov/gene/?term=RB7271 RB7273 RB7273 RB7273 3864417 3864770 + hypothetical protein gene gene4103 http://www.ncbi.nlm.nih.gov/gene/?term=RB7273 RB7275 RB7275 ectB ectB 3864816 3866180 + diaminobutyrate--2-oxoglutarate aminotransferase catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde gene gene4104 http://www.ncbi.nlm.nih.gov/gene/?term=RB7275 RB7276 RB7276 RB7276 3866177 3868927 + peptide synthetase PMID: 20392447 best DB hits: BLAST: embl:CAC01604.1%3B (AJ269505) peptide synthetase [Anabaena sp. 90]%3B E%3D4e-91 embl:CAC11137.1%3B (AJ250581) NikP1 protein [Streptomyces tendae]%3B E%3D9e-91 gb:AAF17281.1%3B (AF204805) NosD [Nostoc sp. GSV224]%3B E%3D4e-89 COG: PA2424_3%3B COG1020 Non-ribosomal peptide synthetase modules and related%3B E%3D9e-85 BS_ppsC_1%3B COG1020 Non-ribosomal peptide synthetase modules and%3B E%3D5e-83 BS_dhbF%3B COG1020 Non-ribosomal peptide synthetase modules and related%3B E%3D2e-81 PFAM: PF00501%3B AMP-binding enzyme%3B E%3D2.2e-131 PF00550%3B Phosphopantetheine attachment%3B E%3D3.1e-21 PF00561%3B alpha/beta hydrolase fold%3B E%3D0.22 gene gene4105 http://www.ncbi.nlm.nih.gov/gene/?term=RB7276 RB7277 RB7277 RB7277 3868924 3869907 + hypothetical protein best DB hits: BLAST: pir:T45719%3B hypothetical protein F1P2.140 - Arabidopsis thaliana%3B E%3D0.014 pir:G82643%3B conserved hypothetical protein XF1745 [imported] -%3B E%3D0.023 pir:T45716%3B hypothetical protein F1P2.110 - Arabidopsis thaliana%3B E%3D0.072 COG: XF1745%3B COG1073 Hydrolases of the alpha/beta superfamily%3B E%3D0.002 gene gene4106 http://www.ncbi.nlm.nih.gov/gene/?term=RB7277 RB7279 RB7279 RB7279 3870019 3870309 + hypothetical protein gene gene4107 http://www.ncbi.nlm.nih.gov/gene/?term=RB7279 RB728 RB728 RB728 389661 393461 - cytochrome c PMID: 1646017 best DB hits: BLAST: pir:T36406%3B hypothetical protein SCF34.07 - Streptomyces coelicolor%3B E%3D2e-05 pir:T34929%3B hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces%3B E%3D0.010 PFAM: PF00034%3B Cytochrome c%3B E%3D0.00011 gene gene392 http://www.ncbi.nlm.nih.gov/gene/?term=RB728 RB7280 RB7280 RB7280 3870457 3870762 + hypothetical protein gene gene4108 http://www.ncbi.nlm.nih.gov/gene/?term=RB7280 RB7283 RB7283 RB7283 3870834 3871508 + signal peptide gene gene4109 http://www.ncbi.nlm.nih.gov/gene/?term=RB7283 RB7284 RB7284 RB7284 3871505 3871639 + hypothetical protein gene gene4110 http://www.ncbi.nlm.nih.gov/gene/?term=RB7284 RB7285 RB7285 htrB htrB 3871636 3872637 + lipid A biosynthesis lauroyl acyltransferase PMID: 20365717 PMID: 10910347 best DB hits: BLAST: pir:E82847%3B lipid A biosynthesis lauroyl acyltransferase XF0104%3B E%3D8e-07 pir:A81318%3B probable lipid A biosynthesis lauroyl acyltransferase%3B E%3D2e-06 gb:AAG43974.1%3B AF215659_2 (AF215659) acyltransferase%3B E%3D1e-05 COG: XF0104%3B COG1560 Lauroyl/myristoyl acyltransferase involved in lipid%3B E%3D8e-08 RP718%3B COG1560 Lauroyl/myristoyl acyltransferase involved in lipid A%3B E%3D4e-04 CPn0098%3B COG1560 Lauroyl/myristoyl acyltransferase involved in lipid%3B E%3D0.005 gene gene4111 http://www.ncbi.nlm.nih.gov/gene/?term=RB7285 RB7287 RB7287 RB7287 3872677 3873726 - ABC transporter permease PMID: 11214968 best DB hits: BLAST: pir:C72369%3B hypothetical protein TM0484 - Thermotoga maritima%3B E%3D6e-08 ddbj:BAB06401.1%3B (AP001516) thiamine biosynthesis [Bacillus%3B E%3D0.009 pir:H72008%3B ABC transporter permease - Chlamydophila pneumoniae%3B E%3D0.42 COG: TM0484%3B COG0715 ABC-type nitrate/sulfonate/taurine/bicarbonate%3B E%3D6e-09 gene gene4112 http://www.ncbi.nlm.nih.gov/gene/?term=RB7287 RB7288 RB7288 RB7288 3873723 3874538 - ABC transporter permease best DB hits: BLAST: gb:AAK03349.1%3B (AE006165) unknown [Pasteurella multocida]%3B E%3D1e-19 pir:F83207%3B probable permease of ABC transporter PA3512 [imported] -%3B E%3D2e-19 ddbj:BAB06400.1%3B (AP001516) ABC transporter (permease) [Bacillus%3B E%3D6e-19 COG: PA3512%3B COG0600 ABC-type nitrate/sulfonate/taurine/bicarbonate%3B E%3D2e-20 PA5095%3B COG1174 ABC-type proline/glycine betaine transport systems%2C%3B E%3D1e-09 CT854_1%3B COG0600 ABC-type nitrate/sulfonate/taurine/bicarbonate%3B E%3D2e-09 PFAM: PF00528%3B Binding-protein-dependent transpor%3B E%3D0.003 gene gene4113 http://www.ncbi.nlm.nih.gov/gene/?term=RB7288 RB7289 RB7289 cysA cysA 3874535 3875434 - sulfate ABC transport ATP-binding protein PMID: 90264334 PMID: 2188958 best DB hits: BLAST: swissprot:P16676%3B CYSA_ECOLI SULFATE TRANSPORT ATP-BINDING PROTEIN%3B E%3D2e-33 gb:AAG57540.1%3B AE005472_7 (AE005472) ATP-binding component of%3B E%3D2e-33 ddbj:BAA21795.1%3B (AB000100) malK-like protein [Synechococcus sp.]%3B E%3D7e-33 COG: cysA%3B COG1118 ABC-type sulfate/molybdate transport systems%2C ATPase%3B E%3D1e-34 NMB0879%3B COG1118 ABC-type sulfate/molybdate transport systems%2C%3B E%3D6e-33 VC0541%3B COG1118 ABC-type sulfate/molybdate transport systems%2C ATPase%3B E%3D8e-33 PFAM: PF00071%3B Ras family%3B E%3D0.11 PF00004%3B ATPase associated with var%3B E%3D0.012 PF00005%3B ABC transporter%3B E%3D4.2e-47 gene gene4114 http://www.ncbi.nlm.nih.gov/gene/?term=RB7289 RB7290 RB7290 RB7290 3875447 3875566 - hypothetical protein gene gene4115 http://www.ncbi.nlm.nih.gov/gene/?term=RB7290 RB7292 RB7292 RB7292 3875577 3876347 + hypothetical protein PMID: 98332770 best DB hits: BLAST: pir:A71318%3B conserved hypothetical protein TP0489 - syphilis%3B E%3D9e-05 gb:AAB90300.1%3B (AE001039) conserved hypothetical protein%3B E%3D1e-04 pir:S74614%3B hypothetical protein sll1036 - Synechocystis sp. (strain%3B E%3D0.001 COG: TP0489%3B COG1235 Metal-dependent hydrolases of the beta-lactamase%3B E%3D8e-06 AF0939%3B COG1234 Metal-dependent hydrolases of the beta-lactamase%3B E%3D1e-05 sll1036%3B COG1235 Metal-dependent hydrolases of the beta-lactamase%3B E%3D1e-04 gene gene4116 http://www.ncbi.nlm.nih.gov/gene/?term=RB7292 RB7294 RB7294 gdh gdh 3876391 3877239 - glucose 1-dehydrogenase PMID: 20479972 best DB hits: BLAST: embl:CAC11337.1%3B (AL445063) probable glucose 1-dehydrogenase%3B E%3D5e-28 ddbj:BAB20935.2%3B (D85817) ORF [Staphylococcus aureus]%3B E%3D2e-27 ddbj:BAB06210.1%3B (AP001515) 3-oxoacyl-(acyl-carrier protein)%3B E%3D2e-27 COG: Ta0191%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D5e-29 BS_ycdF%3B COG1028 Dehydrogenases with different specificities%3B E%3D3e-27 yohF%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D5e-26 PFAM: PF02882%3B Tetrahydrofolate dehydrogenase/%3B E%3D0.28 PF00106%3B short chain dehydrogenase%3B E%3D2.2e-53 PF00678%3B Short chain dehydrogenase/reduc%3B E%3D8.9e-10 gene gene4117 http://www.ncbi.nlm.nih.gov/gene/?term=RB7294 RB7296 RB7296 RB7296 3877224 3877472 + hypothetical protein gene gene4118 http://www.ncbi.nlm.nih.gov/gene/?term=RB7296 RB7297 RB7297 RB7297 3877465 3878073 + hypothetical protein PMID: 20406833 best DB hits: BLAST: pir:D82096%3B hypothetical protein VC2280 [imported] - Vibrio cholerae%3B E%3D1e-25 pir:C82997%3B hypothetical protein PA5196 [imported] - Pseudomonas%3B E%3D6e-13 pir:B82234%3B hypothetical protein VC1162 [imported] - Vibrio cholerae%3B E%3D3e-07 gene gene4119 http://www.ncbi.nlm.nih.gov/gene/?term=RB7297 RB7298 RB7298 RB7298 3878094 3878213 - hypothetical protein gene gene4120 http://www.ncbi.nlm.nih.gov/gene/?term=RB7298 RB7299 RB7299 rimK rimK 3878200 3879417 + ribosomal protein S6 modification protein PMID: 20437337 best DB hits: BLAST: pir:D82997%3B ribosomal protein S6 modification protein PA5197%3B E%3D3e-76 pir:E82096%3B ribosomal protein S6 modification protein VC2281%3B E%3D2e-74 swissprot:P17116%3B RIMK_ECOLI RIBOSOMAL PROTEIN S6 MODIFICATION%3B E%3D1e-60 COG: PA5197%3B COG0189 Glutathione synthase/Ribosomal protein S6%3B E%3D3e-77 rimK%3B COG0189 Glutathione synthase/Ribosomal protein S6 modification%3B E%3D1e-61 HI1531%3B COG0189 Glutathione synthase/Ribosomal protein S6%3B E%3D2e-50 PFAM: PF02080%3B Potassium channel%3B E%3D3.8e-10 gene gene4121 http://www.ncbi.nlm.nih.gov/gene/?term=RB7299 RB73 RB73 RB73 28727 29023 + hypothetical protein gene gene41 http://www.ncbi.nlm.nih.gov/gene/?term=RB73 RB7300 RB7300 lpxK lpxK 3879390 3880487 - tetraacyldisaccharide 4-kinase PMID: 9268317 best DB hits: BLAST: pir:E83274%3B tetraacyldisaccharide 4*-kinase PA2981 [imported] -%3B E%3D4e-25 pir:C82146%3B probable tetraacyldisaccharide 4'-kinase (EC 2.7.1.130)%3B E%3D2e-23 pir:C70443%3B conserved hypothetical protein aq_1656 - Aquifex%3B E%3D2e-22 COG: PA2981%3B COG1663 Lipid A biosynthesis protein LpxK%2C%3B E%3D3e-26 sll0572%3B COG2403 Uncharacterized ACR%3B E%3D0.002 PFAM: PF02606%3B Tetraacyldisaccharide-1-P 4'-kinase%3B E%3D1.6e-13 gene gene4122 http://www.ncbi.nlm.nih.gov/gene/?term=RB7300 RB7301 RB7301 RB7301 3880484 3883120 - helicase PMID: 97000351 best DB hits: BLAST: embl:CAB88936.1%3B (AL353863) helicase [Streptomyces%3B E%3D3e-43 swissprot:Q10701%3B HELY_MYCTU HELICASE HELY ----- pir:%3B E%3D5e-43 embl:CAA22943.1%3B (AL035310) helicase [Mycobacterium%3B E%3D2e-41 COG: Rv2092c%3B COG0513 Superfamily II DNA and RNA helicases%3B E%3D5e-44 Ta0835%3B COG1204 Predicted helicases%3B E%3D9e-28 YLR398c%3B COG0513 Superfamily II DNA and RNA helicases%3B E%3D4e-26 PFAM: PF00004%3B ATPase associated with vari%3B E%3D0.0005 PF01695%3B IstB-like ATP binding protein%3B E%3D0.0061 PF00270%3B DEAD/DEAH box helicase%3B E%3D1.2e-29 gene gene4123 http://www.ncbi.nlm.nih.gov/gene/?term=RB7301 RB7303 RB7303 RB7303 3883041 3883526 + hypothetical protein gene gene4124 http://www.ncbi.nlm.nih.gov/gene/?term=RB7303 RB7306 RB7306 livK livK 3883565 3884809 + leucine/isoleucine/valine-binding protein precursor PMID: 97404404 best DB hits: BLAST: pir:T03460%3B probable leucineisoleucine/valine-binding protein%3B E%3D1e-36 pir:H75444%3B branched-chain amino acid ABC transporter%2C periplasmic%3B E%3D4e-04 pir:G75579%3B branched-chain amino acid ABC transporter%2C periplasmic%3B E%3D9e-04 COG: DR1038%3B COG0683 Periplasmic leucine/isoleucine/valine-binding%3B E%3D4e-05 gene gene4125 http://www.ncbi.nlm.nih.gov/gene/?term=RB7306 RB7308 RB7308 RB7308 3884802 3887642 + sensory box sensor histidine kinase PMID: 20406833 best DB hits: BLAST: pir:H83285%3B probable two-component sensor PA2882 [imported] -%3B E%3D2e-36 pir:F83324%3B probable two-component sensor PA2571 [imported] -%3B E%3D3e-36 pir:D82244%3B sensory box sensor histidine kinase VC1084 [imported] -%3B E%3D7e-34 COG: PA2882%3B COG0642 Sensory transduction histidine kinases%3B E%3D2e-37 PFAM: PF00785%3B PAC motif%3B E%3D5.1e-05 PF00512%3B His Kinase A (phosphoacceptor)%3B E%3D0.0012 PF02518%3B Histidine kinase-%2C DNA gyrase B%3B E%3D5.2e-32 gene gene4126 http://www.ncbi.nlm.nih.gov/gene/?term=RB7308 RB7309 RB7309 RB7309 3887699 3891646 - hypothetical protein gene gene4127 http://www.ncbi.nlm.nih.gov/gene/?term=RB7309 RB7312 RB7312 RB7312 3891704 3891868 - hypothetical protein gene gene4128 http://www.ncbi.nlm.nih.gov/gene/?term=RB7312 RB7313 RB7313 RB7313 3891942 3892097 - hypothetical protein gene gene4129 http://www.ncbi.nlm.nih.gov/gene/?term=RB7313 RB7314 RB7314 rbsB rbsB 3892096 3893412 + bifunctional carbohydrate binding and transport protein PMID: 97000351 PMID: 8843436 best DB hits: BLAST: embl:CAB66286.1%3B (AL136519) bifunctional carbohydrate binding and%3B E%3D2e-20 gb:AAK03409.1%3B (AE006170) unknown [Pasteurella multocida]%3B E%3D4e-20 pir:A72417%3B sugar ABC transporter%2C periplasmic sugar-binding protein%3B E%3D3e-19 COG: TM0114%3B COG1879 Periplasmic sugar-binding proteins%3B E%3D3e-20 PFAM: PF00532%3B Periplasmic binding proteins%3B E%3D0.038 gene gene4130 http://www.ncbi.nlm.nih.gov/gene/?term=RB7314 RB7316 RB7316 RB7316 3893409 3893522 + hypothetical protein gene gene4131 http://www.ncbi.nlm.nih.gov/gene/?term=RB7316 RB7317 RB7317 deaD deaD 3893519 3894877 + ATP-dependent RNA helicase PMID: 99411980 best DB hits: BLAST: ddbj:BAB06103.1%3B (AP001515) ATP-dependent RNA helicase [Bacillus%3B E%3D3e-85 pir:D69772%3B ATP-dependent RNA helicase homolog ydbR - Bacillus%3B E%3D2e-81 gb:AAD20136.1%3B (AF091502) autoaggregation-mediating protein%3B E%3D2e-79 COG: BH2384%3B COG0513 Superfamily II DNA and RNA helicases%3B E%3D3e-86 PFAM: PF00270%3B DEAD/DEAH box helicase%3B E%3D5.5e-71 PF00271%3B Helicase conserved C-terminal doma%3B E%3D1.5e-31 gene gene4132 http://www.ncbi.nlm.nih.gov/gene/?term=RB7317 RB7318 RB7318 RB7318 3894884 3895264 - hypothetical protein gene gene4133 http://www.ncbi.nlm.nih.gov/gene/?term=RB7318 RB7319 RB7319 RB7319 3895261 3895491 - hypothetical protein gene gene4134 http://www.ncbi.nlm.nih.gov/gene/?term=RB7319 RB7321 RB7321 RB7321 3895351 3913824 + hypothetical protein best DB hits: BLAST: ddbj:BAB10333.1%3B (AB016872) gene_id:K21P3.2~~unknown protein%3B E%3D0.089 PFAM: PF00028%3B Cadherin domain%3B E%3D0.14 PF00797%3B N-acetyltransferase%3B E%3D0.3 PF00404%3B Dockerin type I repeat%3B E%3D0.045 gene gene4135 http://www.ncbi.nlm.nih.gov/gene/?term=RB7321 RB733 RB733 RB733 392739 393617 + hypothetical protein gene gene393 http://www.ncbi.nlm.nih.gov/gene/?term=RB733 RB7341 RB7341 RB7341 3913925 3936541 + surface-associated protein cshA precursor PMID: 93125117 PMID: 1479886 PMID: 7891560 best DB hits: BLAST: pir:S61441%3B surface-associated protein cshA precursor - Streptococcus%3B E%3D0.006 PFAM: PF00404%3B Dockerin type I repeat%3B E%3D0.039 gene gene4136 http://www.ncbi.nlm.nih.gov/gene/?term=RB7341 RB735 RB735 RB735 393610 393774 - hypothetical protein gene gene394 http://www.ncbi.nlm.nih.gov/gene/?term=RB735 RB7359 RB7359 proA proA 3936698 3938002 + gamma-glutamyl phosphate reductase PMID: 20437337 best DB hits: BLAST: pir:C83147%3B gamma-glutamyl phosphate reductase PA4007 [imported] -%3B E%3D8e-97 swissprot:O67166%3B PROA_AQUAE GAMMA-GLUTAMYL PHOSPHATE REDUCTASE%3B E%3D1e-96 gb:AAK05706.1%3B AE006391_5 (AE006391) gamma-glutamyl phosphate%3B E%3D4e-96 COG: PA4007%3B COG0014 Gamma-glutamyl phosphate reductase%3B E%3D8e-98 VC2033_1%3B COG1012 NAD-dependent aldehyde dehydrogenases%3B E%3D0.001 PFAM: PF00171%3B Aldehyde dehydrogenase%3B E%3D0.0046 gene gene4137 http://www.ncbi.nlm.nih.gov/gene/?term=RB7359 RB736 RB736 RB736 393734 396208 - rhamnosidase PMID: 10632887 best DB hits: BLAST: pir:T34929%3B hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces%3B E%3D1e-04 embl:CAB53341.1%3B (AJ238748) alfa-L-rhamnosidase [Clostridium%3B E%3D0.019 gene gene395 http://www.ncbi.nlm.nih.gov/gene/?term=RB736 RB7360 RB7360 fliM fliM 3938010 3939296 + flagellar motor switch protein fliM PMID: 96345631 PMID: 8755894 best DB hits: BLAST: swissprot:P74927%3B FLIM_TREPA FLAGELLAR MOTOR SWITCH PROTEIN FLIM%3B E%3D7e-47 swissprot:Q57511%3B FLIM_BORBU FLAGELLAR MOTOR SWITCH PROTEIN FLIM%3B E%3D5e-46 ddbj:BAB06165.1%3B (AP001515) flagellar motor switch protein%3B E%3D3e-44 COG: TP0721%3B COG1868 Flagellar motor switch protein%3B E%3D7e-48 PFAM: PF02154%3B Flagellar motor switch protein FliM%3B E%3D1.3e-68 PF01052%3B Surface presentation of antigens (S%3B E%3D0.19 gene gene4138 http://www.ncbi.nlm.nih.gov/gene/?term=RB7360 RB7361 RB7361 RB7361 3939365 3939496 - hypothetical protein gene gene4139 http://www.ncbi.nlm.nih.gov/gene/?term=RB7361 RB7362 RB7362 RB7362 3939501 3939758 - response regulator CelR2 PMID: 99303335 best DB hits: BLAST: gb:AAD28578.1%3B AF121341_2 (AF121341) response regulator%3B E%3D0.69 gene gene4140 http://www.ncbi.nlm.nih.gov/gene/?term=RB7362 RB7363 RB7363 RB7363 3939802 3940212 + hypothetical protein gene gene4141 http://www.ncbi.nlm.nih.gov/gene/?term=RB7363 RB7364 RB7364 RB7364 3940103 3941347 + signal peptide gene gene4142 http://www.ncbi.nlm.nih.gov/gene/?term=RB7364 RB7367 RB7367 degP degP 3941421 3943328 + periplasmic serine proteinase DO PMID: 99287316 best DB hits: BLAST: pir:F72359%3B periplasmic serine proteinase Do (EC 3.4.21.-) -%3B E%3D6e-26 pir:B81728%3B serine proteinase%2C HtrADegQ/DegS family TC0210%3B E%3D6e-25 swissprot:P18584%3B DEGP_CHLTR PROBABLE SERINE PROTEASE DO-LIKE%3B E%3D7e-25 COG: TM0571%3B COG0265 Trypsin-like serine proteases%2C typically%3B E%3D5e-27 CT823%3B COG0265 Trypsin-like serine proteases%2C typically periplasmic%2C%3B E%3D6e-26 Cj1228c%3B COG0265 Trypsin-like serine proteases%2C typically%3B E%3D8e-26 PFAM: PF00089%3B Trypsin%3B E%3D1.7e-09 PF00595%3B PDZ domain (Also known as DHR or GLG%3B E%3D0.0017 gene gene4143 http://www.ncbi.nlm.nih.gov/gene/?term=RB7367 RB7368 RB7368 degP degP 3943271 3944404 + serine protease PMID: 20150255 best DB hits: BLAST: pir:B81728%3B serine proteinase%2C HtrADegQ/DegS family TC0210%3B E%3D1e-16 swissprot:P18584%3B DEGP_CHLTR PROBABLE SERINE PROTEASE DO-LIKE%3B E%3D2e-16 swissprot:Q9Z6T0%3B DEGP_CHLPN PROBABLE SERINE PROTEASE DO-LIKE%3B E%3D1e-15 COG: CT823%3B COG0265 Trypsin-like serine proteases%2C typically periplasmic%2C%3B E%3D2e-17 CPn0979%3B COG0265 Trypsin-like serine proteases%2C typically%3B E%3D1e-16 RP124%3B COG0265 Trypsin-like serine proteases%2C typically periplasmic%2C%3B E%3D3e-08 PFAM: PF00595%3B PDZ domain (Also known as DHR or GL%3B E%3D1.4e-09 gene gene4144 http://www.ncbi.nlm.nih.gov/gene/?term=RB7368 RB7371 RB7371 degP degP 3944401 3946470 + HtrA family serine protease PMID: 21145866 best DB hits: BLAST: gb:AAK02818.1%3B (AE006110) HtrA [Pasteurella multocida]%3B E%3D4e-23 swissprot:P45129%3B HTOA_HAEIN PROBABLE PERIPLASMIC SERINE PROTEASE%3B E%3D1e-21 gb:AAC38202.1%3B (AF018151) HtrA [Haemophilus influenzae]%3B E%3D2e-21 COG: HI1259%3B COG0265 Trypsin-like serine proteases%2C typically%3B E%3D1e-22 htrA%3B COG0265 Trypsin-like serine proteases%2C typically periplasmic%2C%3B E%3D2e-17 NMB0532%3B COG0265 Trypsin-like serine proteases%2C typically%3B E%3D2e-17 PFAM: PF00595%3B PDZ domain (Also known as DHR or GLG%3B E%3D8.4e-09 gene gene4145 http://www.ncbi.nlm.nih.gov/gene/?term=RB7371 RB7374 RB7374 RB7374 3946584 3947570 + hypothetical protein PMID: 12101309 best DB hits: BLAST: pir:S76547%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D0.020 pir:C71559%3B probable outer membrane leader peptide CT073 - Chlamydia%3B E%3D0.27 pir:A81713%3B conserved hypothetical protein TC0345 [imported] -%3B E%3D0.41 gene gene4146 http://www.ncbi.nlm.nih.gov/gene/?term=RB7374 RB7375 RB7375 pepT pepT 3947593 3948831 - peptidase T catalyzes the release of the N-terminal amino acid from a tripeptide gene gene4147 http://www.ncbi.nlm.nih.gov/gene/?term=RB7375 RB7376 RB7376 RB7376 3948828 3949460 - hypothetical protein PMID: 10567266 best DB hits: BLAST: gb:AAF12632.1%3B AE001826_101 (AE001826) hypothetical protein%3B E%3D0.29 gene gene4148 http://www.ncbi.nlm.nih.gov/gene/?term=RB7376 RB7381 RB7381 RB7381 3949595 3950326 - hypothetical protein gene gene4149 http://www.ncbi.nlm.nih.gov/gene/?term=RB7381 RB7382 RB7382 RB7382 3950426 3951508 - hypothetical protein PMID: 11214968 gene gene4150 http://www.ncbi.nlm.nih.gov/gene/?term=RB7382 RB7383 RB7383 RB7383 3951505 3951717 - signal peptide gene gene4151 http://www.ncbi.nlm.nih.gov/gene/?term=RB7383 RB7385 RB7385 sprE sprE 3951653 3952438 - sepiapterin reductase PMID: 98044033 best DB hits: BLAST: pir:E70007%3B sepiapterin reductase homolog yueD - Bacillus subtilis%3B E%3D2e-09 pir:B70407%3B alcohol dehydrogenase - Aquifex aeolicus ----- gb:%3B E%3D3e-09 gb:AAF48896.1%3B (AE003510) CG7322 gene product [Drosophila%3B E%3D5e-08 COG: BS_yueD%3B COG1028 Dehydrogenases with different specificities%3B E%3D2e-10 XF0145%3B COG0300 Short-chain dehydrogenases of various substrate%3B E%3D2e-07 YIR035c%3B COG1028 Dehydrogenases with different specificities%3B E%3D3e-07 PFAM: PF00106%3B short chain dehydrogenase%3B E%3D2.7e-12 gene gene4152 http://www.ncbi.nlm.nih.gov/gene/?term=RB7385 RB7386 RB7386 RB7386 3952464 3952583 - hypothetical protein gene gene4153 http://www.ncbi.nlm.nih.gov/gene/?term=RB7386 RB7388 RB7388 y4qJ y4qJ 3952745 3953593 + integrase/recombinase y4qk PMID: 9163424 best DB hits: BLAST: swissprot:P55632%3B Y4QK_RHISN INTEGRASERECOMBINASE Y4QK%3B E%3D7e-25 swissprot:P55429%3B Y4EF_RHISN INTEGRASERECOMBINASE Y4EF%3B E%3D5e-24 prf:2115270D%3B integrase [Weeksella zoohelcum]%3B E%3D4e-18 COG: PAB0255%3B COG0582 Integrase%3B E%3D1e-15 PFAM: PF00589%3B Phage integrase%3B E%3D2.6e-19 gene gene4154 http://www.ncbi.nlm.nih.gov/gene/?term=RB7388 RB7389 RB7389 y4qJ y4qJ 3953590 3954717 + transposase y4qj PMID: 9163424 best DB hits: BLAST: swissprot:P55631%3B Y4QJ_RHISN TRANSPOSASE Y4QJ -----%3B E%3D7e-39 prf:2115270C%3B transposase [Weeksella zoohelcum]%3B E%3D6e-35 pir:S23782%3B transposase tnpA (insertion sequence IS91) - Escherichia%3B E%3D5e-14 gene gene4155 http://www.ncbi.nlm.nih.gov/gene/?term=RB7389 RB7390 RB7390 RB7390 3954342 3954968 + hypothetical protein gene gene4156 http://www.ncbi.nlm.nih.gov/gene/?term=RB7390 RB7392 RB7392 RB7392 3955080 3955364 - hypothetical protein gene gene4157 http://www.ncbi.nlm.nih.gov/gene/?term=RB7392 RB7393 RB7393 RB7393 3955353 3955553 + hypothetical protein gene gene4158 http://www.ncbi.nlm.nih.gov/gene/?term=RB7393 RB7394 RB7394 RB7394 3955527 3955937 - hypothetical protein gene gene4159 http://www.ncbi.nlm.nih.gov/gene/?term=RB7394 RB7395 RB7395 RB7395 3955956 3956351 + transcription factor SP1 best DB hits: BLAST: swissprot:P08047%3B SP1_HUMAN TRANSCRIPTION FACTOR SP1 -----%3B E%3D0.76 gene gene4160 http://www.ncbi.nlm.nih.gov/gene/?term=RB7395 RB7397 RB7397 RB7397 3956438 3956551 - hypothetical protein gene gene4161 http://www.ncbi.nlm.nih.gov/gene/?term=RB7397 RB7398 RB7398 RB7398 3956615 3957253 - hypothetical protein best DB hits: PFAM: PF00903%3B Glyoxalase/Bleomycin resistance pr%3B E%3D0.0062 gene gene4162 http://www.ncbi.nlm.nih.gov/gene/?term=RB7398 RB7399 RB7399 y4qK y4qK 3957300 3958685 - integrase/recombinase Y4QK PMID: 97305956 PMID: 9163424 best DB hits: BLAST: swissprot:P55632%3B Y4QK_RHISN INTEGRASERECOMBINASE Y4QK%3B E%3D6e-37 prf:2115270D%3B integrase [Weeksella zoohelcum]%3B E%3D1e-35 swissprot:P55429%3B Y4EF_RHISN INTEGRASERECOMBINASE Y4EF%3B E%3D2e-33 COG: MTH893%3B COG0582 Integrase%3B E%3D1e-31 PFAM: PF02899%3B Phage integrase%2C N-terminal S%3B E%3D0.0062 PF00589%3B Phage integrase%3B E%3D4.2e-40 gene gene4163 http://www.ncbi.nlm.nih.gov/gene/?term=RB7399 RB7401 RB7401 RB7401 3958756 3959001 + hypothetical protein gene gene4164 http://www.ncbi.nlm.nih.gov/gene/?term=RB7401 RB7402 RB7402 RB7402 3959074 3959751 + hypothetical protein gene gene4165 http://www.ncbi.nlm.nih.gov/gene/?term=RB7402 RB7404 RB7404 RB7404 3959805 3960737 - hypothetical protein PMID: 98416126 best DB hits: BLAST: pir:T44684%3B hypothetical protein Cbi [imported] - Bacillus%3B E%3D6e-22 ddbj:BAB05215.1%3B (AP001512) BH1496~~unknown conserved protein%3B E%3D2e-19 pir:S75947%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D3e-19 COG: BH1496%3B COG2138 Uncharacterized ACR%3B E%3D2e-20 gene gene4166 http://www.ncbi.nlm.nih.gov/gene/?term=RB7404 RB7406 RB7406 RB7406 3960764 3961156 - signal peptide gene gene4167 http://www.ncbi.nlm.nih.gov/gene/?term=RB7406 RB7408 RB7408 ctpA ctpA 3961365 3962852 - carboxyl-terminal proteinase PMID: 98196666 best DB hits: BLAST: pir:F70369%3B carboxyl-terminal proteinase - Aquifex aeolicus -----%3B E%3D4e-49 swissprot:Q44879%3B CTPA_BARBA CARBOXY-TERMINAL PROCESSING PROTEASE%3B E%3D7e-49 pir:B83005%3B probable carboxyl-terminal proteinase PA5134 [imported]%3B E%3D7e-47 COG: aq_797%3B COG0793 Periplasmic protease%3B E%3D3e-50 PFAM: PF00595%3B PDZ domain (Also known as DHR or GLG%3B E%3D0.0011 gene gene4168 http://www.ncbi.nlm.nih.gov/gene/?term=RB7408 RB7409 RB7409 RB7409 3962837 3963070 - hypothetical protein gene gene4169 http://www.ncbi.nlm.nih.gov/gene/?term=RB7409 RB741 RB741 RB741 396210 396782 + hypothetical protein gene gene396 http://www.ncbi.nlm.nih.gov/gene/?term=RB741 RB7410 RB7410 RB7410 3963019 3964356 - histidine kinase (PhoR1) best DB hits: BLAST: embl:CAB37946.1%3B (AJ133131) histidine kinase (PhoR1)%3B E%3D2e-43 swissprot:P35164%3B RESE_BACSU SENSOR PROTEIN RESE ----- pir:%3B E%3D7e-40 embl:CAB64973.1%3B (AJ012050) VicK protein [Enterococcus faecalis]%3B E%3D1e-38 COG: BH4026%3B COG0642 Sensory transduction histidine kinases%3B E%3D2e-39 PFAM: PF00989%3B PAS domain%3B E%3D0.0015 PF00512%3B His Kinase A (phosphoacceptor) doma%3B E%3D9.2e-20 PF02518%3B Histidine kinase-%2C DNA gyrase B-%2C p%3B E%3D7.3e-38 gene gene4170 http://www.ncbi.nlm.nih.gov/gene/?term=RB7410 RB7411 RB7411 RB7411 3964353 3964529 - hypothetical protein gene gene4171 http://www.ncbi.nlm.nih.gov/gene/?term=RB7411 RB7412 RB7412 RB7412 3964518 3964904 + hypothetical protein gene gene4172 http://www.ncbi.nlm.nih.gov/gene/?term=RB7412 RB7414 RB7414 RB7414 3964937 3965263 - hypothetical protein gene gene4173 http://www.ncbi.nlm.nih.gov/gene/?term=RB7414 RB7415 RB7415 RB7415 3965167 3969372 + hypothetical protein gene gene4174 http://www.ncbi.nlm.nih.gov/gene/?term=RB7415 RB7418 RB7418 RB7418 3969369 3979892 + hypothetical protein best DB hits: PFAM: PF01433%3B Peptidase M1%3B E%3D0.23 PF01542%3B Hepatitis C virus core protei%3B E%3D0.54 PF00034%3B Cytochrome c%3B E%3D0.002 gene gene4175 http://www.ncbi.nlm.nih.gov/gene/?term=RB7418 RB7424 RB7424 nifS nifS 3979889 3981148 + aminotransferase NifS- NifS-like protein PMID: 99411980 best DB hits: BLAST: pir:G69051%3B nifS protein - Methanobacterium thermoautotrophicum%3B E%3D8e-37 ddbj:BAB07775.1%3B (AP001520) aminotransferase required for NAD%3B E%3D1e-34 pir:F70019%3B nifS protein homolog yurW - Bacillus subtilis -----%3B E%3D4e-27 COG: MTH1389%3B COG0520 Selenocysteine lyase%3B E%3D8e-38 aq_739%3B COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase%3B E%3D1e-20 BH3469%3B COG0520 Selenocysteine lyase%3B E%3D5e-20 PFAM: PF00266%3B Aminotransferase class-V%3B E%3D1.4e-19 gene gene4176 http://www.ncbi.nlm.nih.gov/gene/?term=RB7424 RB7425 RB7425 nadA nadA 3981262 3982491 + quinolinate synthetase 3 different subfamilies%3B catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate gene gene4177 http://www.ncbi.nlm.nih.gov/gene/?term=RB7425 RB7428 RB7428 RB7428 3982578 3982964 + hypothetical protein PMID: 7542800 best DB hits: BLAST: swissprot:P45019%3B YGDD_HAEIN HYPOTHETICAL PROTEIN HI1073 -----%3B E%3D6e-10 pir:C83599%3B conserved hypothetical protein PA0379 [imported] -%3B E%3D2e-09 embl:CAB63338.1%3B (AL032631) Y106G6H.8 [Caenorhabditis elegans]%3B E%3D3e-09 COG: HI1073%3B COG2363 Uncharacterized small membrane protein%3B E%3D6e-11 gene gene4178 http://www.ncbi.nlm.nih.gov/gene/?term=RB7428 RB7429 RB7429 pyrB pyrB 3982983 3984014 + aspartate carbamoyltransferase PMID: 97000351 best DB hits: BLAST: embl:CAB93367.1%3B (AL357523) aspartate carbamoyltransferase%3B E%3D4e-67 swissprot:P74163%3B PYRB_SYNY3 ASPARTATE CARBAMOYLTRANSFERASE%3B E%3D6e-64 swissprot:Q59711%3B PYRB_PSEPU ASPARTATE CARBAMOYLTRANSFERASE%3B E%3D5e-63 COG: slr1476%3B COG0540 Aspartate carbamoyltransferase%2C catalytic chain%3B E%3D6e-65 PFAM: PF02729%3B Aspartate/ornithine carbamoylt%3B E%3D1.1e-44 PF01229%3B Glycosyl hydrolases family 39%3B E%3D0.23 PF00185%3B Aspartate/ornithine carbamoylt%3B E%3D7.1e-18 gene gene4179 http://www.ncbi.nlm.nih.gov/gene/?term=RB7429 RB7430 RB7430 pyrC pyrC 3983957 3985327 + dihydroorotase PMID: 97000351 PMID: 7516791 best DB hits: BLAST: embl:CAB93366.1%3B (AL357523) dihydroorotase [Streptomyces%3B E%3D2e-61 swissprot:P71809%3B PYRC_MYCTU DIHYDROOROTASE (DHOASE) -----%3B E%3D2e-54 swissprot:Q59712%3B PYRX_PSEPU DIHYDROOROTASE-LIKE PROTEIN%3B E%3D5e-54 COG: Rv1381%3B COG0044 Dihydroorotase%3B E%3D2e-55 PFAM: PF00744%3B Dihydroorotase-like%3B E%3D5.8e-12 PF02612%3B N-acetylglucosamine-6-phosphat%3B E%3D0.25 PF00744%3B Dihydroorotase-like%3B E%3D1.5e-33 gene gene4180 http://www.ncbi.nlm.nih.gov/gene/?term=RB7430 RB7431 RB7431 rnpA rnpA 3985327 3985767 + ribonuclease P protein component PMID: 9628904 PMID: 99356711 PMID: 10427704 PMID: 20512582 PMID: 11058132 best DB hits: BLAST: swissprot:Q9RCA4%3B RNPA_BACHD RIBONUCLEASE P PROTEIN COMPONENT%3B E%3D3e-07 swissprot:Q9Z6X2%3B RNPA_CHLPN RIBONUCLEASE P PROTEIN COMPONENT%3B E%3D3e-06 pir:JQ1214%3B ribonuclease P (EC 3.1.26.5) protein component rnpA -%3B E%3D5e-06 COG: BH4065%3B COG0594 RNase P protein component%3B E%3D3e-08 PFAM: PF00825%3B Ribonuclease P%3B E%3D2.6e-21 gene gene4181 http://www.ncbi.nlm.nih.gov/gene/?term=RB7431 RB7433 RB7433 RB7433 3985750 3986793 - hypothetical protein best DB hits: BLAST: pir:F82509%3B conserved hypothetical protein VCA0040 [imported] -%3B E%3D6e-37 pir:H69160%3B hypothetical protein MTH465 - Methanobacterium%3B E%3D5e-26 gb:AAG19472.1%3B (AE005039) Vng1069c [Halobacterium sp. NRC-1]%3B E%3D2e-19 COG: VCA0040%3B COG2035 Predicted membrane protein%3B E%3D6e-38 gene gene4182 http://www.ncbi.nlm.nih.gov/gene/?term=RB7433 RB7434 RB7434 RB7434 3986759 3986899 + hypothetical protein gene gene4183 http://www.ncbi.nlm.nih.gov/gene/?term=RB7434 RB7435 RB7435 bacA bacA 3986915 3987688 + bacitracin resistance protein (BacA) PMID: 8389741 best DB hits: BLAST: gb:AAG03365.1%3B (AF024666) BacA [Corynebacterium striatum]%3B E%3D2e-26 gb:AAG58191.1%3B AE005535_3 (AE005535) bacitracin resistance%3B E%3D7e-26 swissprot:P31054%3B BACA_ECOLI BACITRACIN RESISTANCE PROTEIN%3B E%3D8e-26 COG: bacA%3B COG1968 Uncharacterized ACR%2C bacitracin resistance protein%3B E%3D7e-27 MTH1429%3B COG1968 Uncharacterized ACR%2C bacitracin resistance%3B E%3D2e-06 PFAM: PF02673%3B Bacitracin resistance protein BacA%3B E%3D0.005 gene gene4184 http://www.ncbi.nlm.nih.gov/gene/?term=RB7435 RB7437 RB7437 lexA lexA 3987953 3988672 + LexA protein PMID: 1657879 PMID: 8969214 PMID: 9555905 best DB hits: BLAST: embl:CAA12169.1%3B (AJ224870) LexA protein [Streptomyces%3B E%3D2e-17 swissprot:P31080%3B LEXA_BACSU LEXA REPRESSOR (SOS REGULATORY%3B E%3D8e-17 pir:T35123%3B SOS response regulator lexA - Streptomyces coelicolor%3B E%3D1e-16 COG: BS_lexA%3B COG1974 SOS-response transcriptional repressors%3B E%3D8e-18 lexA%3B COG1974 SOS-response transcriptional repressors (RecA-mediated%3B E%3D2e-14 VC0092%3B COG1974 SOS-response transcriptional repressors%3B E%3D3e-13 PFAM: PF01726%3B LexA DNA binding domain%3B E%3D5.5e-33 PF00717%3B Peptidase S24%3B E%3D0.0016 gene gene4185 http://www.ncbi.nlm.nih.gov/gene/?term=RB7437 RB7439 RB7439 RB7439 3988692 3990002 - signal peptidase best DB hits: PFAM: PF00461%3B Signal peptidase I%3B E%3D0.0034 gene gene4186 http://www.ncbi.nlm.nih.gov/gene/?term=RB7439 RB7440 RB7440 RB7440 3990113 3990535 + two-component sensor histidine kinase best DB hits: BLAST: gb:AAF18102.1%3B AF204400_2 (AF204400) FrgB [Myxococcus xanthus]%3B E%3D0.13 ddbj:BAB07745.1%3B (AP001520) two-component sensor histidine kinase%3B E%3D0.83 PFAM: PF02518%3B Histidine kinase-%2C DNA gyrase B%3B E%3D0.00025 gene gene4187 http://www.ncbi.nlm.nih.gov/gene/?term=RB7440 RB7442 RB7442 flgB flgB 3990532 3991098 + flagellar basal-body rod protein FlgB PMID: 20437337 PMID: 1905667 best DB hits: BLAST: pir:C83510%3B flagellar basal-body rod protein FlgB PA1077%3B E%3D0.002 gb:AAD19729.1%3B (AF124349) flagellar basal-body rod protein%3B E%3D0.020 gb:AAF14367.1%3B AF133240_1 (AF133240) flagellar proximal rod%3B E%3D0.034 COG: PA1077%3B COG1815 Flagellar basal body protein%3B E%3D1e-04 gene gene4188 http://www.ncbi.nlm.nih.gov/gene/?term=RB7442 RB7443 RB7443 flgC flgC 3991134 3991565 + flagellar basal body rod protein FlgC PMID: 2129540 PMID: 2404955 PMID: 11677608 best DB hits: BLAST: swissprot:Q57466%3B FLGC_BORBU FLAGELLAR BASAL-BODY ROD PROTEIN FLGC%3B E%3D2e-18 gb:AAC45656.1%3B (U82214) FlgC [Proteus mirabilis]%3B E%3D4e-18 swissprot:P16438%3B FLGC_SALTY FLAGELLAR BASAL-BODY ROD PROTEIN FLGC%3B E%3D1e-17 COG: BB0293%3B COG1558 Flagellar basal body rod protein%3B E%3D2e-19 PFAM: PF00460%3B Flagella basal body rod protein%3B E%3D0.001 gene gene4189 http://www.ncbi.nlm.nih.gov/gene/?term=RB7443 RB7444 RB7444 fliE fliE 3991601 3992020 + flagellar hook-basal body complex protein FliE PMID: 1905667 best DB hits: BLAST: pir:G72263%3B flagellar hook-basal body complex protein FliE -%3B E%3D7e-05 swissprot:O67242%3B FLIE_AQUAE FLAGELLAR HOOK-BASAL BODY COMPLEX%3B E%3D1e-04 pir:E64714%3B flagellar hook-basal body complex protein - Helicobacter%3B E%3D0.002 COG: TM1366%3B COG1677 Flagellar hook-basal body protein%3B E%3D7e-06 PFAM: PF02049%3B Flagellar hook-basal body complex pr%3B E%3D1.9e-12 gene gene4190 http://www.ncbi.nlm.nih.gov/gene/?term=RB7444 RB7445 RB7445 fliF fliF 3992031 3993668 + polar flagellar M-ring protein FliF PMID: 20115548 PMID: 10648530 best DB hits: BLAST: gb:AAD15920.1%3B (AF069392) polar flagellar M-ring protein FliF%3B E%3D6e-04 swissprot:Q53151%3B FLIF_RHOSH FLAGELLAR M-RING PROTEIN -----%3B E%3D0.001 swissprot:O67241%3B FLIF_AQUAE FLAGELLAR M-RING PROTEIN -----%3B E%3D0.002 COG: aq_1182%3B COG1766 Flagellar biosynthesis/type III secretory pathway%3B E%3D2e-04 PFAM: PF01514%3B Secretory protein of YscJ/FliF fa%3B E%3D0.00027 gene gene4191 http://www.ncbi.nlm.nih.gov/gene/?term=RB7445 RB7446 RB7446 RB7446 3993693 3994460 - signal peptide gene gene4192 http://www.ncbi.nlm.nih.gov/gene/?term=RB7446 RB7447 RB7447 RB7447 3993813 3994457 + signal peptide gene gene4193 http://www.ncbi.nlm.nih.gov/gene/?term=RB7447 RB745 RB745 RB745 396869 397759 - carboxymethylenebutenolidase PMID: 7684040 best DB hits: BLAST: gb:AAG58136.1%3B AE005530_2 (AE005530) enzyme [Escherichia%3B E%3D1e-83 pir:E65086%3B hypothetical protein b2999 - Escherichia coli (strain%3B E%3D4e-35 pir:F65086%3B hypothetical protein b3000 - Escherichia coli (strain%3B E%3D2e-31 COG: yghX+Y%3B COG0412 Dienelactone hydrolase and related enzymes%3B E%3D3e-36 PFAM: PF01738%3B Dienelactone hydrolase%3B E%3D5.7e-57 gene gene397 http://www.ncbi.nlm.nih.gov/gene/?term=RB745 RB7451 RB7451 RB7451 3994530 3994706 + hypothetical protein gene gene4194 http://www.ncbi.nlm.nih.gov/gene/?term=RB7451 RB7452 RB7452 RB7452 3994713 3995225 + hypothetical protein PMID: 98282232 best DB hits: BLAST: gb:AAF23370.1%3B (AF178219) MMSET type II [Homo sapiens]%3B E%3D5e-12 ddbj:BAA83042.1%3B (AB029013) KIAA1090 protein [Homo sapiens]%3B E%3D5e-12 gb:AAK00344.1%3B AF330040_1 (AF330040) IL-5 promoter%3B E%3D5e-12 COG: YHR119w%3B COG2940 Proteins containing SET domain%3B E%3D3e-06 PFAM: PF00856%3B SET domain%3B E%3D5.6e-16 gene gene4195 http://www.ncbi.nlm.nih.gov/gene/?term=RB7452 RB7453 RB7453 nifS nifS 3995366 3996511 + cysteine desulfurase PMID: 10930739 PMID: 2553733 best DB hits: BLAST: gb:AAG01802.1%3B AF276772_1 (AF276772) cysteine desulfurase NifS%3B E%3D4e-53 swissprot:P12623%3B NIFS_ANASP NIFS PROTEIN ----- pir: C34443%3B E%3D2e-50 swissprot:Q43884%3B NIFS_ANAAZ NIFS PROTEIN ----- gb: AAA87249.1%3B E%3D3e-50 COG: yfhO%3B COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase%3B E%3D3e-51 PFAM: PF00266%3B Aminotransferase class-V%3B E%3D7.9e-47 gene gene4196 http://www.ncbi.nlm.nih.gov/gene/?term=RB7453 RB7454 RB7454 RB7454 3996496 3996714 - hypothetical protein gene gene4197 http://www.ncbi.nlm.nih.gov/gene/?term=RB7454 RB7455 RB7455 RB7455 3996761 3999277 - hypothetical protein PMID: 20196006 best DB hits: BLAST: gb:AAF57876.1%3B (AE003803) CG6564 gene product [Drosophila%3B E%3D0.010 embl:CAA96576.1%3B (Z72495) ZP2 [Carassius auratus]%3B E%3D0.47 gene gene4198 http://www.ncbi.nlm.nih.gov/gene/?term=RB7455 RB7460 RB7460 RB7460 3999258 3999599 - hypothetical protein gene gene4199 http://www.ncbi.nlm.nih.gov/gene/?term=RB7460 RB7461 RB7461 RB7461 3999634 4001478 + sensor kinase best DB hits: BLAST: gb:AAA98756.1%3B (L29642) sensor kinase [Pseudomonas fluorescens]%3B E%3D2e-07 pir:S42745%3B nitrogen assimilation regulatory protein ntrC -%3B E%3D8e-07 swissprot:P45671%3B NTRC_AZOBR NITROGEN ASSIMILATION REGULATORY%3B E%3D4e-06 COG: VCA0142%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D7e-07 BB0570%3B COG0784 CheY-like receiver domains%3B E%3D6e-06 Rv0981%3B COG0745 Response regulators consisting of a CheY-like%3B E%3D9e-06 PFAM: PF01590%3B GAF domain%3B E%3D6.1e-16 PF00072%3B Response regulator receiver doma%3B E%3D7.9e-12 gene gene4200 http://www.ncbi.nlm.nih.gov/gene/?term=RB7461 RB7464 RB7464 RB7464 4001480 4001614 - hypothetical protein gene gene4201 http://www.ncbi.nlm.nih.gov/gene/?term=RB7464 RB7465 RB7465 sir sir 4001633 4003504 - sulfite reductase subunit beta hemoprotein%3B NADPH dependent%3B with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide gene gene4202 http://www.ncbi.nlm.nih.gov/gene/?term=RB7465 RB7468 RB7468 folD folD 4003464 4004447 + 5%2C20-methylene-tetrahyrdofolate dehydrogenase (NADP+) / methylentetrahydrofolate cyclohydrolase PMID: 8485162 best DB hits: BLAST: ddbj:BAB06503.1%3B (AP001516) methylenetetrahydrofolate%3B E%3D8e-74 swissprot:P54382%3B FOLD_BACSU FOLD BIFUNCTIONAL PROTEIN [INCLUDES:%3B E%3D2e-70 gb:AAF07929.1%3B AF186073_2 (AF186073) NMDMC isoform A [Drosophila%3B E%3D3e-70 COG: BH2784%3B COG0190 5%2C10-methylene-tetrahydrofolate dehydrogenase%3B E%3D8e-75 PFAM: PF00763%3B Tetrahydrofolate dehydrogenase/%3B E%3D4.3e-68 PF01262%3B Alanine dehydrogenase/pyridine%3B E%3D0.71 PF02882%3B Tetrahydrofolate dehydrogenase/%3B E%3D1.1e-101 gene gene4203 http://www.ncbi.nlm.nih.gov/gene/?term=RB7468 RB7469 RB7469 RB7469 4004558 4006096 - hypothetical protein PMID: 91151356 PMID: 91151356 PMID: 92235856 best DB hits: BLAST: pir:S21801%3B myosin heavy chain%2C neuronal [similarity] - rat%3B E%3D0.047 gb:AAD01409.1%3B (AF007557) Mrp22 [Streptococcus pyogenes]%3B E%3D0.082 pir:S57834%3B fcrA protein precursor - Streptococcus pyogenes -----%3B E%3D0.15 gene gene4204 http://www.ncbi.nlm.nih.gov/gene/?term=RB7469 RB7471 RB7471 RB7471 4006083 4006361 - hypothetical protein gene gene4205 http://www.ncbi.nlm.nih.gov/gene/?term=RB7471 RB7472 RB7472 RB7472 4006340 4009093 + hypothetical protein gene gene4206 http://www.ncbi.nlm.nih.gov/gene/?term=RB7472 RB7474 RB7474 rpfC rpfC 4009223 4011820 - sensory transduction histidine kinase best DB hits: BLAST: pir:S75525%3B sensory transduction histidine kinase sll1228 -%3B E%3D3e-62 pir:S75136%3B sensory transduction histidine kinase slr2104 -%3B E%3D5e-60 pir:H82211%3B sensory box sensor histidine kinaseresponse regulator%3B E%3D1e-58 COG: VC1349_2%3B COG0642 Sensory transduction histidine kinases%3B E%3D9e-60 PFAM: PF00989%3B PAS domain%3B E%3D0.025 PF00785%3B PAC motif%3B E%3D0.012 PF00989%3B PAS domain%3B E%3D7.5e-05 gene gene4207 http://www.ncbi.nlm.nih.gov/gene/?term=RB7474 RB7475 RB7475 RB7475 4011889 4012086 + hypothetical protein gene gene4208 http://www.ncbi.nlm.nih.gov/gene/?term=RB7475 RB7476 RB7476 RB7476 4012092 4013264 - signal peptide gene gene4209 http://www.ncbi.nlm.nih.gov/gene/?term=RB7476 RB7479 RB7479 RB7479 4013334 4013702 + hypothetical protein gene gene4210 http://www.ncbi.nlm.nih.gov/gene/?term=RB7479 RB7481 RB7481 arsA arsA 4013745 4015334 + arylsulphatase A PMID: 7910580 PMID: 1572648 best DB hits: BLAST: embl:CAA36398.1%3B (X52150) arylsulphatase a [Homo sapiens]%3B E%3D2e-44 gb:AAB03341.1%3B (U62317) arylsulfatase A [Homo sapiens]%3B E%3D2e-44 pdb:1E2S%3B P Chain P%2C Crystal Structure Of An Arylsulfatase A%3B E%3D2e-43 COG: aslA%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D2e-27 PFAM: PF00884%3B Sulfatase%3B E%3D1.7e-47 PF01920%3B KE2 family protein%3B E%3D0.32 gene gene4211 http://www.ncbi.nlm.nih.gov/gene/?term=RB7481 RB7482 RB7482 rfbE rfbE 4015443 4016498 - CDP-tyvelose epimerase PMID: 96125720 PMID: 97158136 PMID: 2793833 best DB hits: BLAST: gb:AAB48319.1%3B (U29691) CDP-tyvelose epimerase [Yersinia%3B E%3D2e-29 swissprot:P14169%3B RFBE_SALTI CDP-TYVELOSE-2-EPIMERASE -----%3B E%3D3e-27 pir:B33604%3B rfbE protein - Salmonella sp%3B E%3D7e-26 COG: HI0873%3B COG1088 dTDP-D-glucose 4%2C6-dehydratase%3B E%3D5e-19 BH3649%3B COG0451 Nucleoside-diphosphate-sugar epimerases%3B E%3D1e-14 PH0414%3B COG1088 dTDP-D-glucose 4%2C6-dehydratase%3B E%3D1e-14 PFAM: PF01370%3B NAD dependent epimerase/dehydratase%3B E%3D0.0012 gene gene4212 http://www.ncbi.nlm.nih.gov/gene/?term=RB7482 RB7484 RB7484 RB7484 4016511 4016675 - hypothetical protein gene gene4213 http://www.ncbi.nlm.nih.gov/gene/?term=RB7484 RB7486 RB7486 RB7486 4016672 4017064 - hypothetical protein gene gene4214 http://www.ncbi.nlm.nih.gov/gene/?term=RB7486 RB7488 RB7488 hydH hydH 4017110 4017949 + sensor protein HYDH PMID: 2666400 best DB hits: BLAST: swissprot:P14377%3B HYDH_ECOLI SENSOR PROTEIN HYDH ----- pir:%3B E%3D5e-19 gb:AAG59200.1%3B AE005632_1 (AE005632) sensor kinase for HydG%2C%3B E%3D6e-18 swissprot:P07168%3B VIRA_AGRT6 WIDE HOST RANGE VIRA PROTEIN (WHR%3B E%3D6e-18 COG: hydH%3B COG0642 Sensory transduction histidine kinases%3B E%3D5e-20 PFAM: PF00512%3B His Kinase A (phosphoacceptor) doma%3B E%3D1.1e-06 PF02518%3B Histidine kinase-%2C DNA gyrase B-%2C p%3B E%3D4e-35 gene gene4215 http://www.ncbi.nlm.nih.gov/gene/?term=RB7488 RB749 RB749 RB749 397939 399552 - serine/threonine protein kinase related protein PMID: 9371463 best DB hits: BLAST: pir:H69064%3B serinethreonine protein kinase related protein -%3B E%3D5e-05 pir:JC4881%3B polyvinyl-alcohol dehydrogenase (acceptor) (EC%3B E%3D0.017 gb:AAB89850.1%3B (AE001008) conserved hypothetical protein%3B E%3D0.076 COG: MTH1485%3B COG1520 Uncharacterized proteins of WD40-like repeat family%3B E%3D4e-06 PFAM: PF01011%3B PQQ enzyme repeat%3B E%3D0.1 PF00993%3B Class II histocompatibility ant%3B E%3D0.47 PF01011%3B PQQ enzyme repeat%3B E%3D0.00012 gene gene398 http://www.ncbi.nlm.nih.gov/gene/?term=RB749 RB7491 RB7491 RB7491 4018102 4018983 + L-proline 4-hydroxylase PMID: 99402746 PMID: 10473412 best DB hits: BLAST: ddbj:BAA20094.1%3B (D78338) L-proline 4-hydroxylase%3B E%3D1e-10 gb:AAF54534.2%3B (AE003688) CG14688 gene product [Drosophila%3B E%3D3e-07 ddbj:BAA75924.1%3B (D73371) epoxidase subunit A [Penicillium%3B E%3D3e-06 gene gene4216 http://www.ncbi.nlm.nih.gov/gene/?term=RB7491 RB7494 RB7494 RB7494 4019046 4020083 + NADH-dependent dyhydrogenase related protein best DB hits: BLAST: pir:B75025%3B NADH-dependent dyhydrogenase related protein PAB1139 -%3B E%3D2e-11 pir:E71201%3B probable glucose-fructose oxidoreductase - Pyrococcus%3B E%3D8e-10 gb:AAC01706.1%3B (AF040570) unknown [Amycolatopsis mediterranei]%3B E%3D2e-09 COG: PAB1139%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D2e-12 PFAM: PF01408%3B Oxidoreductase%2C NAD-bin%3B E%3D3.2e-10 PF02894%3B Oxidoreductase%2C C-termi%3B E%3D3.4e-05 gene gene4217 http://www.ncbi.nlm.nih.gov/gene/?term=RB7494 RB7495 RB7495 RB7495 4020151 4029972 - hypothetical protein PMID: 11932238 best DB hits: BLAST: gb:AAD38597.1%3B AF145622_1 (AF145622) BcDNA.GH04245 [Drosophila%3B E%3D6e-08 gb:AAG22339.1%3B (AE003787) Ogt gene product [alt 3] [Drosophila%3B E%3D6e-08 swissprot:P56558%3B OGT1_RAT UDP-N-ACETYLGLUCOSAMINE--PEPTIDE%3B E%3D9e-08 COG: MTH72%3B COG0457 TPR-repeat-containing proteins%3B E%3D9e-07 PFAM: PF00515%3B TPR Domain%3B E%3D0.017 PF00671%3B Iron/Ascorbate oxidoreductase%3B E%3D0.67 PF00515%3B TPR Domain%3B E%3D0.21 gene gene4218 http://www.ncbi.nlm.nih.gov/gene/?term=RB7495 RB7500 RB7500 moxR moxR 4030069 4031112 + methanol dehydrogenase regulator (moxR)-like protein PMID: 98065943 PMID: 9403685 PMID: 8997703 best DB hits: BLAST: pir:H70121%3B methanol dehydrogenase regulator (moxR) homolog - Lyme%3B E%3D2e-65 embl:CAA65298.1%3B (X96434) moxR [Borrelia burgdorferi] -----%3B E%3D3e-63 pir:C83106%3B conserved hypothetical protein PA4322 [imported] -%3B E%3D1e-61 COG: BB0176%3B COG0714 MoxR-like ATPases%3B E%3D2e-66 PFAM: PF00004%3B ATPase associated with%3B E%3D1.1e-05 PF02223%3B Thymidylate kinase%3B E%3D0.47 PF01078%3B Magnesium chelatase%2C subunit%3B E%3D3.9e-08 gene gene4219 http://www.ncbi.nlm.nih.gov/gene/?term=RB7500 RB7501 RB7501 RB7501 4031109 4032011 + hypothetical protein PMID: 97061201 best DB hits: BLAST: pir:S75346%3B hypothetical protein slr2013 - Synechocystis sp. (strain%3B E%3D3e-11 pir:D83106%3B hypothetical protein PA4323 [imported] - Pseudomonas%3B E%3D1e-10 embl:CAB90930.1%3B (AL355774) lipoprotein [Streptomyces%3B E%3D1e-09 COG: slr2013%3B COG1721 Uncharacterized ACR%3B E%3D3e-12 PFAM: PF01882%3B Protein of unknown function DUF58%3B E%3D2.5e-18 gene gene4220 http://www.ncbi.nlm.nih.gov/gene/?term=RB7501 RB7502 RB7502 RB7502 4032015 4033937 + hypothetical protein PMID: 11932238 gene gene4221 http://www.ncbi.nlm.nih.gov/gene/?term=RB7502 RB7503 RB7503 RB7503 4033904 4036606 + chloride channel PMID: 11932238 PMID: 96127529 PMID: 8590279 best DB hits: BLAST: swissprot:Q55874%3B Y103_SYNY3 HYPOTHETICAL 45.8 KD PROTEIN SLL0103%3B E%3D5e-12 gb:AAF13350.1%3B AF121336_1 (AF121336) unknown [Eufolliculina%3B E%3D4e-11 embl:CAB75310.1%3B (AL139164) lipoprotein [Streptomyces%3B E%3D1e-10 COG: sll0103%3B COG2304 Protein containing von Willebrand factor (vWF) type%3B E%3D5e-13 yfbK%3B COG2304 Protein containing von Willebrand factor (vWF) type A%3B E%3D2e-09 DRA0331%3B COG2304 Protein containing von Willebrand factor (vWF) type%3B E%3D0.003 PFAM: PF00092%3B von Willebrand factor type A domain%3B E%3D0.024 gene gene4222 http://www.ncbi.nlm.nih.gov/gene/?term=RB7503 RB7507 RB7507 RB7507 4036748 4038313 + hypothetical protein PMID: 93211444 gene gene4223 http://www.ncbi.nlm.nih.gov/gene/?term=RB7507 RB7509 RB7509 RB7509 4038376 4039899 - signal peptide gene gene4224 http://www.ncbi.nlm.nih.gov/gene/?term=RB7509 RB751 RB751 RB751 399365 400045 - hypothetical protein gene gene399 http://www.ncbi.nlm.nih.gov/gene/?term=RB751 RB7510 RB7510 RB7510 4039899 4041125 - hypothetical protein PMID: 94281248 PMID: 8011666 PMID: 97419514 PMID: 9274029 best DB hits: BLAST: swissprot:P40407%3B YBBC_BACSU HYPOTHETICAL 46.0 KDA PROTEIN IN%3B E%3D6e-75 ddbj:BAB04393.1%3B (AP001509) BH0674~~unknown conserved protein%3B E%3D3e-71 pir:G81651%3B conserved hypothetical protein TC0894 [imported] -%3B E%3D5e-47 gene gene4225 http://www.ncbi.nlm.nih.gov/gene/?term=RB7510 RB7512 RB7512 RB7512 4041167 4042690 - integral membrane transport protein PMID: 97000351 PMID: 8559252 best DB hits: BLAST: embl:CAC16517.1%3B (AL450223) integral membrane transport%3B E%3D3e-41 pir:A82432%3B sodiumsolute symporter VCA0667 [imported] - Vibrio%3B E%3D4e-26 pir:S75887%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D2e-25 COG: VCA0667%3B COG0591 Na+/proline%2C Na+/panthothenate symporters and%3B E%3D4e-27 yidK%3B COG0591 Na+/proline%2C Na+/panthothenate symporters and related%3B E%3D2e-06 PA0287%3B COG0591 Na+/proline%2C Na+/panthothenate symporters and%3B E%3D2e-06 PFAM: PF00474%3B Sodium:solute symporter family%3B E%3D1.6e-20 gene gene4226 http://www.ncbi.nlm.nih.gov/gene/?term=RB7512 RB7514 RB7514 murQ murQ 4042826 4043734 + N-acetylmuramic acid-6-phosphate etherase catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate%3B involved in MurNAc dissimilation pathway gene gene4227 http://www.ncbi.nlm.nih.gov/gene/?term=RB7514 RB7515 RB7515 RB7515 4043608 4044696 + N-acetylglucosamine kinase best DB hits: BLAST: gb:AAF19757.1%3B AC009917_16 (AC009917) F26G16.16 [Arabidopsis%3B E%3D7e-24 embl:CAB71200.1%3B (AL138538) kinase [Streptomyces%3B E%3D6e-20 gb:AAF55174.1%3B (AE003708) CG6218 gene product [Drosophila%3B E%3D8e-12 COG: Ta0122%3B COG2971 Uncharacterized BCR%3B E%3D2e-06 gene gene4228 http://www.ncbi.nlm.nih.gov/gene/?term=RB7515 RB7517 RB7517 RB7517 4044716 4045426 - hypothetical protein gene gene4229 http://www.ncbi.nlm.nih.gov/gene/?term=RB7517 RB7518 RB7518 RB7518 4045551 4045736 - hypothetical protein gene gene4230 http://www.ncbi.nlm.nih.gov/gene/?term=RB7518 RB752 RB752 RB752 399966 403046 + hypothetical protein PMID: 10952301 best DB hits: BLAST: pir:E82064%3B conserved hypothetical protein VC2547 [imported] -%3B E%3D0.44 gene gene400 http://www.ncbi.nlm.nih.gov/gene/?term=RB752 RB7521 RB7521 RB7521 4045790 4047814 + signal peptide best DB hits: PFAM: PF01841%3B Transglutaminase-like superfam%3B E%3D0.039 gene gene4231 http://www.ncbi.nlm.nih.gov/gene/?term=RB7521 RB7522 RB7522 RB7522 4047815 4047928 + hypothetical protein gene gene4232 http://www.ncbi.nlm.nih.gov/gene/?term=RB7522 RB7523 RB7523 RB7523 4047925 4048074 + hypothetical protein gene gene4233 http://www.ncbi.nlm.nih.gov/gene/?term=RB7523 RB7525 RB7525 RB7525 4048085 4048930 - signal peptide PMID: 2250030 gene gene4234 http://www.ncbi.nlm.nih.gov/gene/?term=RB7525 RB7530 RB7530 RB7530 4049005 4049298 - hypothetical protein gene gene4235 http://www.ncbi.nlm.nih.gov/gene/?term=RB7530 RB7531 RB7531 RB7531 4049347 4049706 - hypothetical protein gene gene4236 http://www.ncbi.nlm.nih.gov/gene/?term=RB7531 RB7532 RB7532 RB7532 4049364 4049582 + hypothetical protein gene gene4237 http://www.ncbi.nlm.nih.gov/gene/?term=RB7532 RB7533 RB7533 RB7533 4049600 4049971 + hypothetical protein PMID: 11930014 gene gene4238 http://www.ncbi.nlm.nih.gov/gene/?term=RB7533 RB7535 RB7535 RB7535 4050024 4050434 + hypothetical protein gene gene4239 http://www.ncbi.nlm.nih.gov/gene/?term=RB7535 RB7538 RB7538 RB7538 4050553 4052556 + hypothetical protein PMID: 20406833 best DB hits: BLAST: pir:A82284%3B conserved hypothetical protein VC0762 [imported] -%3B E%3D0.029 pir:T29127%3B hypothetical protein SC1F2.18 - Streptomyces coelicolor%3B E%3D0.18 pir:H69064%3B serinethreonine protein kinase related protein -%3B E%3D0.49 COG: VC0762%3B COG1520 Uncharacterized proteins of WD40-like repeat family%3B E%3D0.003 PFAM: PF01011%3B PQQ enzyme repeat%3B E%3D0.054 gene gene4240 http://www.ncbi.nlm.nih.gov/gene/?term=RB7538 RB754 RB754 RB754 403211 404305 + polysaccharide export protein PMID: 7596293 best DB hits: BLAST: pir:S75310%3B gumB protein - Synechocystis sp. (strain PCC 6803)%3B E%3D3e-06 pir:E72350%3B hypothetical protein TM0638 - Thermotoga maritima%3B E%3D0.005 swissprot:Q46629%3B AMSH_ERWAM AMYLOVORAN EXPORT OUTER MEMBRANE%3B E%3D0.012 COG: sll1581%3B COG1596 Periplasmic protein involved in polysaccharide%3B E%3D3e-07 yccZ%3B COG1596 Periplasmic protein involved in polysaccharide export%3B E%3D0.009 gene gene401 http://www.ncbi.nlm.nih.gov/gene/?term=RB754 RB7540 RB7540 RB7540 4052562 4052732 + hypothetical protein gene gene4241 http://www.ncbi.nlm.nih.gov/gene/?term=RB7540 RB7541 RB7541 RB7541 4052699 4054777 + serine/threonine protein kinase related protein PMID: 98037514 best DB hits: BLAST: pir:H69064%3B serinethreonine protein kinase related protein -%3B E%3D0.16 gene gene4242 http://www.ncbi.nlm.nih.gov/gene/?term=RB7541 RB7542 RB7542 RB7542 4054857 4054997 + hypothetical protein gene gene4243 http://www.ncbi.nlm.nih.gov/gene/?term=RB7542 RB7544 RB7544 RB7544 4054985 4055206 - hypothetical protein gene gene4244 http://www.ncbi.nlm.nih.gov/gene/?term=RB7544 RB7545 RB7545 RB7545 4055149 4055379 + hypothetical protein gene gene4245 http://www.ncbi.nlm.nih.gov/gene/?term=RB7545 RB7546 RB7546 metF metF 4055403 4056287 - 5%2C10-methylenetetrahydrofolate reductase PMID: 99215588 PMID: 6356036 best DB hits: BLAST: swissprot:O67422%3B METF_AQUAE 5%2C10-METHYLENETETRAHYDROFOLATE%3B E%3D1e-57 pir:T47821%3B methylenetetrahydrofolate reductase MTHFR1 - Arabidopsis%3B E%3D6e-50 gb:AAD51733.1%3B AF174486_1 (AF174486) methylenetetrahydrofolate%3B E%3D6e-48 COG: aq_1429%3B COG0685 5%2C10-methylenetetrahydrofolate reductase%3B E%3D1e-58 PFAM: PF02219%3B Methylenetetrahydrofolate reductase%3B E%3D2.9e-97 gene gene4246 http://www.ncbi.nlm.nih.gov/gene/?term=RB7546 RB7547 RB7547 RB7547 4056333 4056542 + hypothetical protein gene gene4247 http://www.ncbi.nlm.nih.gov/gene/?term=RB7547 RB7548 RB7548 RB7548 4056682 4057539 - syringomycin biosynthesis enzyme 2 PMID: 98007868 PMID: 99047670 best DB hits: BLAST: gb:AAF01812.1%3B AF187532_8 (AF187532) SnoK [Streptomyces nogalater]%3B E%3D1e-09 gb:AAD50521.1%3B (U25130) syringomycin biosynthesis enzyme 2%3B E%3D1e-09 gb:AAC71711.1%3B (AF061267) alpha-ketoglutarate-dependent%3B E%3D1e-07 gene gene4248 http://www.ncbi.nlm.nih.gov/gene/?term=RB7548 RB7549 RB7549 RB7549 4057545 4057727 + hypothetical protein gene gene4249 http://www.ncbi.nlm.nih.gov/gene/?term=RB7549 RB7550 RB7550 RB7550 4057734 4058303 + hypothetical protein gene gene4250 http://www.ncbi.nlm.nih.gov/gene/?term=RB7550 RB7554 RB7554 RB7554 4058314 4058751 + signal peptide PMID: 11823852 gene gene4251 http://www.ncbi.nlm.nih.gov/gene/?term=RB7554 RB7555 RB7555 RB7555 4058409 4058948 + hypothetical protein gene gene4252 http://www.ncbi.nlm.nih.gov/gene/?term=RB7555 RB7557 RB7557 RB7557 4058936 4059919 + hypothetical protein best DB hits: BLAST: swissprot:P70960%3B YWMC_BACSU HYPOTHETICAL 24.5 KDA PROTEIN IN%3B E%3D3e-05 embl:CAB75310.1%3B (AL139164) lipoprotein [Streptomyces%3B E%3D4e-05 swissprot:Q55874%3B Y103_SYNY3 HYPOTHETICAL 45.8 KD PROTEIN SLL0103%3B E%3D6e-05 COG: BS_ywmC%3B COG2304 Protein containing von Willebrand factor (vWF) type%3B E%3D3e-06 VCA0172%3B COG3035 Uncharacterized BCR%3B E%3D3e-05 PFAM: PF00092%3B von Willebrand factor type A domain%3B E%3D0.013 gene gene4253 http://www.ncbi.nlm.nih.gov/gene/?term=RB7557 RB7559 RB7559 RB7559 4059970 4060392 + transporter gene gene4254 http://www.ncbi.nlm.nih.gov/gene/?term=RB7559 RB756 RB756 RB756 404655 406817 - beta-lactamase regulatory protein PMID: 3040663 PMID: 3260234 PMID: 2404938 best DB hits: BLAST: swissprot:P12287%3B BLAR_BACLI REGULATORY PROTEIN BLAR1 -----%3B E%3D7e-09 pir:I39942%3B penicillinase antirepressor penJ - Bacillus%3B E%3D8e-09 swissprot:P26597%3B MECR_STAEP METHICILLIN RESISTANCE MECR1 PROTEIN%3B E%3D4e-07 gene gene402 http://www.ncbi.nlm.nih.gov/gene/?term=RB756 RB7560 RB7560 GALNS GALNS 4060394 4061986 - N-acetylgalactosamine 6-sulfate sulfatase (GALNS) PMID: 1755850 PMID: 8001980 PMID: 1522213 best DB hits: BLAST: ddbj:BAA04535.1%3B (D17629) N-acetylgalactosamine 6-sulfate%3B E%3D1e-31 gb:AAF63858.1%3B (AF112242) N-acetylgalactosamine-6-sulfate%3B E%3D4e-30 embl:CAA36398.1%3B (X52150) arylsulphatase a [Homo sapiens]%3B E%3D8e-28 COG: ydeN%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D3e-26 PFAM: PF00884%3B Sulfatase%3B E%3D7.7e-45 gene gene4255 http://www.ncbi.nlm.nih.gov/gene/?term=RB7560 RB7562 RB7562 RB7562 4062057 4062959 - lipase/esterase PMID: 97288094 best DB hits: BLAST: pir:B75555%3B probable lipaseesterase - Deinococcus radiodurans%3B E%3D1e-14 pir:B70961%3B probable esterase - Mycobacterium tuberculosis (strain%3B E%3D1e-13 pir:H70731%3B probable esterase - Mycobacterium tuberculosis (strain%3B E%3D2e-08 COG: DR0133%3B COG0657 Acetyl esterase%3B E%3D1e-15 APE2441%3B COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases%3B E%3D1e-04 Rv1399c%3B COG0657 Acetyl esterase%3B E%3D0.001 gene gene4256 http://www.ncbi.nlm.nih.gov/gene/?term=RB7562 RB7563 RB7563 RB7563 4062975 4063148 - hypothetical protein gene gene4257 http://www.ncbi.nlm.nih.gov/gene/?term=RB7563 RB7564 RB7564 cefD cefD 4063124 4064311 + isopenicillin N-epimerase PMID: 8437592 best DB hits: BLAST: swissprot:Q03046%3B CEFD_NOCLA ISOPENICILLIN N EPIMERASE -----%3B E%3D8e-34 ddbj:BAA96579.1%3B (AP002480) ESTs AU091298(C61241)%2CC28476(C61241)%3B E%3D2e-31 swissprot:P18549%3B CEFD_STRCL ISOPENICILLIN N EPIMERASE -----%3B E%3D6e-31 COG: csdB%3B COG0520 Selenocysteine lyase%3B E%3D3e-15 VC0748%3B COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase%3B E%3D1e-07 XF1473%3B COG0520 Selenocysteine lyase%3B E%3D2e-07 PFAM: PF00266%3B Aminotransferase class-V%3B E%3D1.3e-12 gene gene4258 http://www.ncbi.nlm.nih.gov/gene/?term=RB7564 RB7565 RB7565 RB7565 4064351 4065637 - hypothetical protein PMID: 11743193 gene gene4259 http://www.ncbi.nlm.nih.gov/gene/?term=RB7565 RB7566 RB7566 RB7566 4065613 4065720 - hypothetical protein gene gene4260 http://www.ncbi.nlm.nih.gov/gene/?term=RB7566 RB7567 RB7567 RB7567 4065664 4065873 + hypothetical protein gene gene4261 http://www.ncbi.nlm.nih.gov/gene/?term=RB7567 RB7568 RB7568 RB7568 4065680 4065898 - hypothetical protein gene gene4262 http://www.ncbi.nlm.nih.gov/gene/?term=RB7568 RB7569 RB7569 mutM mutM 4065806 4066708 + formamidopyrimidine-DNA glycosylase PMID: 96102858 best DB hits: BLAST: swissprot:P55044%3B FPG_NEIMB FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE%3B E%3D2e-29 swissprot:P95744%3B FPG_SYNEN FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE%3B E%3D6e-29 prf:2204218A%3B formamidopyrimidine-DNA glycosylase [Neisseria%3B E%3D7e-28 COG: NMB1295%3B COG0266 Formamidopyrimidine-DNA glycosylase%3B E%3D2e-30 PFAM: PF01149%3B Formamidopyrimidine-DNA glycos%3B E%3D6.4e-14 gene gene4263 http://www.ncbi.nlm.nih.gov/gene/?term=RB7569 RB757 RB757 RB757 406810 407223 - beta-lactamase repressor protein PMID: 3096969 PMID: 3305074 PMID: 3260234 PMID: 3040663 PMID: 3498148 best DB hits: BLAST: swissprot:P06555%3B BLAI_BACLI PENICILLINASE REPRESSOR (REGULATORY%3B E%3D0.24 pir:B28183%3B beta-lactamase repressor protein - Bacillus%3B E%3D0.34 swissprot:P26598%3B MECI_STAEP METHICILLIN RESISTANCE REGULATORY%3B E%3D0.60 gene gene403 http://www.ncbi.nlm.nih.gov/gene/?term=RB757 RB7572 RB7572 pfkA pfkA 4066752 4068164 - 6-phosphofructokinase PMID: 99287316 best DB hits: BLAST: pir:G72396%3B 6-phosphofructokinase%2C pyrophosphate-dependent -%3B E%3D1e-36 pir:S54978%3B 6-phosphofructokinase (EC 2.7.1.11)%2C%3B E%3D9e-32 gb:AAA85791.1%3B (U11733) pyrophosphate-dependent%3B E%3D1e-31 COG: TM0289%3B COG0205 6-phosphofructokinase%3B E%3D1e-37 PFAM: PF00365%3B Phosphofructokinase%3B E%3D0.0021 gene gene4264 http://www.ncbi.nlm.nih.gov/gene/?term=RB7572 RB7574 RB7574 RB7574 4068298 4069113 - hypothetical protein PMID: 11889109 best DB hits: BLAST: pir:F64553%3B hypothetical protein HP0270 - Helicobacter pylori%3B E%3D6e-07 pir:F71953%3B hypothetical protein jhp0255 - Helicobacter pylori%3B E%3D6e-07 swissprot:Q9ZE57%3B Y090_RICPR HYPOTHETICAL PROTEIN RP090 -----%3B E%3D8e-07 COG: jhp0255%3B COG2121 Uncharacterized BCR%3B E%3D6e-08 PFAM: PF01553%3B Acyltransferase%3B E%3D0.068 gene gene4265 http://www.ncbi.nlm.nih.gov/gene/?term=RB7574 RB7577 RB7577 RB7577 4069269 4070366 - hypothetical protein gene gene4266 http://www.ncbi.nlm.nih.gov/gene/?term=RB7577 RB7578 RB7578 csrA csrA 4070466 4071035 + global regulator PMID: 11727819 best DB hits: BLAST: gb:AAG40471.1%3B (AF216382) global regulator [Legionella%3B E%3D4e-10 gb:AAK03372.1%3B (AE006168) CsrA [Pasteurella multocida]%3B E%3D8e-09 swissprot:Q9WY93%3B CSRA_THEMA CARBON STORAGE REGULATOR HOMOLOG%3B E%3D6e-08 COG: TM0251%3B COG1551 Carbon storage regulator (could also regulate%3B E%3D6e-09 PFAM: PF02599%3B Carbon storage regulator%3B E%3D2.5e-19 gene gene4267 http://www.ncbi.nlm.nih.gov/gene/?term=RB7578 RB7579 RB7579 atoC atoC 4071162 4072619 + acetoacetate metabolism regulatory protein ATOC PMID: 8346225 best DB hits: BLAST: swissprot:Q06065%3B ATOC_ECOLI ACETOACETATE METABOLISM REGULATORY%3B E%3D2e-88 pir:F71315%3B probable response regulatory protein (atoC) - syphilis%3B E%3D6e-87 gb:AAF18103.1%3B AF204400_3 (AF204400) FrgC [Myxococcus xanthus]%3B E%3D5e-82 COG: atoC%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D2e-89 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D3.9e-32 PF00005%3B ABC transporter%3B E%3D0.86 PF00004%3B ATPase associated with va%3B E%3D5.1e-06 gene gene4268 http://www.ncbi.nlm.nih.gov/gene/?term=RB7579 RB758 RB758 RB758 407340 407558 - hypothetical protein gene gene404 http://www.ncbi.nlm.nih.gov/gene/?term=RB758 RB7580 RB7580 thiD thiD 4072588 4073415 + thiamin biosynthesis protein PMID: 10075431 best DB hits: BLAST: pir:E71057%3B probable thiamin biosynthesis protein - Pyrococcus%3B E%3D4e-45 pir:C75087%3B hydroxymethylpyrimidine phosphate kinase (thid) PAB1646%3B E%3D2e-44 pir:F75613%3B phosphomethylpyrimidine kinase - Deinococcus radiodurans%3B E%3D5e-43 COG: PH1155_1%3B COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine%3B E%3D4e-46 thiD%3B COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase%3B E%3D3e-42 NMB1616%3B COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine%3B E%3D3e-41 PFAM: PF01031%3B Dynamin central region%3B E%3D0.41 PF00294%3B pfkB family carbohydrate kinase%3B E%3D7.7e-08 gene gene4269 http://www.ncbi.nlm.nih.gov/gene/?term=RB7580 RB7581 RB7581 RB7581 4073449 4074489 - hypothetical protein gene gene4270 http://www.ncbi.nlm.nih.gov/gene/?term=RB7581 RB7583 RB7583 lplA lplA 4074530 4075372 - lipoate protein ligase PMID: 99411980 PMID: 99184645 PMID: 99356711 PMID: 99209008 PMID: 99184646 PMID: 20263314 best DB hits: BLAST: ddbj:BAB06531.1%3B (AP001516) lipoate protein ligase [Bacillus%3B E%3D3e-24 pir:D69959%3B conserved hypothetical protein yqhM - Bacillus subtilis%3B E%3D8e-22 pir:C72462%3B hypothetical protein APE2342 - Aeropyrum pernix (strain%3B E%3D8e-17 COG: BH2812%3B COG0095 Lipoate-protein ligase A%3B E%3D3e-25 PFAM: PF02539%3B Lipoate-protein ligase A%3B E%3D1.4e-11 gene gene4271 http://www.ncbi.nlm.nih.gov/gene/?term=RB7583 RB7584 RB7584 yqhK yqhK 4075369 4076871 - glycine dehydrogenase subunit 2 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine%3B forms a heterodimer with subunit 1 to form the P protein gene gene4272 http://www.ncbi.nlm.nih.gov/gene/?term=RB7584 RB7585 RB7585 yqhJ yqhJ 4076905 4078350 - glycine dehydrogenase subunit 1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine%3B forms a heterodimer with subunit 2 to form the P protein gene gene4273 http://www.ncbi.nlm.nih.gov/gene/?term=RB7585 RB7586 RB7586 gcvH gcvH 4078313 4078711 - glycine cleavage system H protein PMID: 1802033 PMID: 8375392 PMID: 8219277 best DB hits: BLAST: swissprot:Q9WY55%3B GCSH_THEMA PROBABLE GLYCINE CLEAVAGE SYSTEM H%3B E%3D6e-15 swissprot:P23884%3B GCSH_ECOLI GLYCINE CLEAVAGE SYSTEM H PROTEIN%3B E%3D3e-14 gb:AAC61829.1%3B (AC004667) glycine decarboxylase complex H-protein%3B E%3D3e-14 COG: TM0212%3B COG0509 Glycine cleavage system H protein (lipoate-binding)%3B E%3D6e-16 VNG1605G%3B COG0509 Glycine cleavage system H protein%3B E%3D4e-14 VCA0277%3B COG0509 Glycine cleavage system H protein (lipoate-binding)%3B E%3D8e-14 PFAM: PF01597%3B Glycine cleavage H-protein%3B E%3D9.4e-39 gene gene4274 http://www.ncbi.nlm.nih.gov/gene/?term=RB7586 RB7587 RB7587 gcvT gcvT 4078815 4079981 - aminotransferase-glycine cleavage system T protein PMID: 8165246 best DB hits: BLAST: swissprot:O86567%3B GCST_STRCO PROBABLE AMINOMETHYLTRANSFERASE%3B E%3D6e-67 swissprot:P54378%3B GCST_BACSU PROBABLE AMINOMETHYLTRANSFERASE%3B E%3D1e-61 swissprot:Q9K934%3B GCST_BACHD PROBABLE AMINOMETHYLTRANSFERASE%3B E%3D2e-59 COG: BS_yqhI%3B COG0404 Glycine cleavage system T protein%3B E%3D1e-62 PFAM: PF01571%3B Glycine cleavage T-protein (aminomet%3B E%3D7.5e-102 gene gene4275 http://www.ncbi.nlm.nih.gov/gene/?term=RB7587 RB7589 RB7589 RB7589 4079978 4080238 - hypothetical protein gene gene4276 http://www.ncbi.nlm.nih.gov/gene/?term=RB7589 RB7590 RB7590 RB7590 4080204 4083185 - proteinase PMID: 96178988 best DB hits: BLAST: pir:D75377%3B probable proteinase - Deinococcus radiodurans (strain%3B E%3D1e-172 gb:AAC98910.1%3B (AF028721) protease [Rhodothermus sp. 'ITI 518']%3B E%3D5e-37 pir:C82309%3B probable insulinase-type proteinase VC0554 [imported] -%3B E%3D2e-36 COG: DR1598%3B COG0612 Predicted Zn-dependent peptidases%3B E%3D1e-173 PFAM: PF00675%3B Insulinase (Peptidase M%3B E%3D3e-15 gene gene4277 http://www.ncbi.nlm.nih.gov/gene/?term=RB7590 RB7592 RB7592 RB7592 4083050 4083712 + ferredoxin best DB hits: BLAST: embl:CAA09913.1%3B (AJ012090) ferredoxin [Xanthobacter sp. Py2]%3B E%3D7e-06 pir:B83424%3B assimilatory nitrite reductase small subunit PA1780%3B E%3D8e-06 gb:AAD46364.1%3B AF161183_4 (AF161183) PrnD [Burkholderia cepacia]%3B E%3D3e-04 COG: PA1780%3B COG2146 Ferredoxin subunits of nitrite reductase and%3B E%3D8e-07 PFAM: PF00355%3B Rieske [2Fe-2S] domain%3B E%3D1.7e-15 gene gene4278 http://www.ncbi.nlm.nih.gov/gene/?term=RB7592 RB7594 RB7594 RB7594 4083655 4083975 - hypothetical protein gene gene4279 http://www.ncbi.nlm.nih.gov/gene/?term=RB7594 RB7596 RB7596 RB7596 4084008 4084535 + hypothetical protein gene gene4280 http://www.ncbi.nlm.nih.gov/gene/?term=RB7596 RB7597 RB7597 marR marR 4084525 4084977 + MarR family transcriptional regulator best DB hits: BLAST: pir:C82396%3B transcriptional regulator MarR family VCA0955 [imported] -%3B E%3D3e-04 embl:CAB95985.1%3B (AL360034) MarR-family regulatory%3B E%3D4e-04 gb:AAD05186.1%3B (AF110185) unknown [Burkholderia pseudomallei]%3B E%3D8e-04 COG: VCA0955%3B COG1846 Transcriptional regulators%3B E%3D3e-05 PFAM: PF01047%3B MarR family%3B E%3D5.2e-13 gene gene4281 http://www.ncbi.nlm.nih.gov/gene/?term=RB7597 RB7598 RB7598 RB7598 4084913 4086382 + alkyl sulfatase or beta-lactamase PMID: 92267380 best DB hits: BLAST: pir:JC1118%3B alkyl sulfatase (EC 3.1.6.-) - Pseudomonas sp -----%3B E%3D2e-61 pir:G83552%3B probable beta-lactamase PA0740 [imported] - Pseudomonas%3B E%3D3e-48 embl:CAA99186.1%3B (Z74906) ORF YOL164w [Saccharomyces cerevisiae]%3B E%3D4e-43 COG: PA0740%3B COG2015 Alkyl sulfatase and related hydrolases%3B E%3D2e-49 aq_1798%3B COG0491 Zn-dependent hydrolases%2C including glyoxylases%3B E%3D2e-07 PFAM: PF00753%3B Metallo-beta-lactamase superfamil%3B E%3D5.2e-32 PF02151%3B UvrB/uvrC motif%3B E%3D0.24 gene gene4282 http://www.ncbi.nlm.nih.gov/gene/?term=RB7598 RB7599 RB7599 RB7599 4086379 4086498 - hypothetical protein gene gene4283 http://www.ncbi.nlm.nih.gov/gene/?term=RB7599 RB76 RB76 RB76 29164 29736 + signal peptide gene gene42 http://www.ncbi.nlm.nih.gov/gene/?term=RB76 RB760 RB760 RB760 407598 409022 + N-acetylgalactosamine-6-sulfatase PMID: 20164110 best DB hits: BLAST: gb:AAF63858.1%3B (AF112242) N-acetylgalactosamine-6-sulfate%3B E%3D7e-47 embl:CAA36398.1%3B (X52150) arylsulphatase a [Homo sapiens]%3B E%3D8e-44 gb:AAB03341.1%3B (U62317) arylsulfatase A [Homo sapiens]%3B E%3D8e-44 COG: ydeN%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D6e-26 PAB0793%3B COG2194 Predicted membrane-associated%2C metal-dependent%3B E%3D9e-06 Rv3077%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D6e-04 PFAM: PF00884%3B Sulfatase%3B E%3D8.3e-90 gene gene405 http://www.ncbi.nlm.nih.gov/gene/?term=RB760 RB7600 RB7600 gltX gltX 4086470 4088107 - glutamyl-tRNA synthetase PMID: 1541262 best DB hits: BLAST: swissprot:O86528%3B SYE_STRCO GLUTAMYL-TRNA SYNTHETASE%3B E%3D4e-74 ddbj:BAB03828.1%3B (AP001507) glutamyl-tRNA synthetase [Bacillus%3B E%3D2e-65 swissprot:Q9X172%3B SYE1_THEMA GLUTAMYL-TRNA SYNTHETASE 1%3B E%3D3e-65 COG: BH0109%3B COG0008 Glutamyl- and glutaminyl-tRNA synthetases%3B E%3D2e-66 PFAM: PF00749%3B tRNA synthetases class I (E and%3B E%3D1.3e-102 gene gene4284 http://www.ncbi.nlm.nih.gov/gene/?term=RB7600 RB7601 RB7601 RB7601 4088110 4088460 - hypothetical protein gene gene4285 http://www.ncbi.nlm.nih.gov/gene/?term=RB7601 RB7603 RB7603 RB7603 4088560 4091070 - hypothetical protein best DB hits: BLAST: pir:T23334%3B hypothetical protein K04H8.3 - Caenorhabditis elegans%3B E%3D0.53 PFAM: PF02321%3B Outer membrane efflux protein%3B E%3D0.0021 gene gene4286 http://www.ncbi.nlm.nih.gov/gene/?term=RB7603 RB7607 RB7607 RB7607 4090995 4091456 + hypothetical protein gene gene4287 http://www.ncbi.nlm.nih.gov/gene/?term=RB7607 RB7610 RB7610 RB7610 4091594 4092859 + DNA-dependent DNA polymerase beta chain yshC PMID: 98044033 best DB hits: BLAST: pir:C69985%3B probable DNA-dependent DNA polymerase beta chain yshC -%3B E%3D0.23 ddbj:BAB06826.1%3B (AP001517) DNA-dependent DNA polymerase beta%3B E%3D0.41 PFAM: PF02231%3B PHP domain N-terminal region%3B E%3D0.00015 gene gene4288 http://www.ncbi.nlm.nih.gov/gene/?term=RB7610 RB7612 RB7612 RB7612 4092907 4093317 + hypothetical protein gene gene4289 http://www.ncbi.nlm.nih.gov/gene/?term=RB7612 RB7613 RB7613 RB7613 4093418 4093558 - hypothetical protein gene gene4290 http://www.ncbi.nlm.nih.gov/gene/?term=RB7613 RB7615 RB7615 RB7615 4093593 4094009 - acetyltransferase PMID: 2828880 best DB hits: BLAST: pir:A65018%3B hypothetical protein b2434 - Escherichia coli (strain%3B E%3D2e-19 gb:AAG57552.1%3B AE005473_7 (AE005473) Z3699 gene product%3B E%3D3e-19 pir:F82455%3B probable acetyltransferase VCA0470 [imported] - Vibrio%3B E%3D3e-10 COG: ypeA%3B COG0456 Acetyltransferases%3B E%3D2e-20 VNG1215G%3B COG0454 Histone acetyltransferase HPA2 and related%3B E%3D1e-04 PA4534%3B COG0456 Acetyltransferases%3B E%3D1e-04 PFAM: PF00583%3B Acetyltransferase (GNAT) family%3B E%3D1.7e-26 gene gene4291 http://www.ncbi.nlm.nih.gov/gene/?term=RB7615 RB7616 RB7616 RB7616 4094087 4094752 - hypothetical protein PMID: 99120557 best DB hits: BLAST: pir:G71971%3B hypothetical protein jhp0125 - Helicobacter pylori%3B E%3D9e-04 pir:T36430%3B hypothetical protein SCF43A.07 - Streptomyces coelicolor%3B E%3D0.002 pir:A64537%3B hypothetical protein HP0137 - Helicobacter pylori%3B E%3D0.003 COG: jhp0125%3B COG1556 Uncharacterized ACR%3B E%3D8e-05 APE0258%3B COG1139 Uncharacterized conserved protein containing a%3B E%3D0.007 ykgG%3B COG1556 Uncharacterized ACR%3B E%3D0.009 PFAM: PF02589%3B Uncharacterized ACR%2C YkgG family COG%3B E%3D2.3e-07 gene gene4292 http://www.ncbi.nlm.nih.gov/gene/?term=RB7616 RB7618 RB7618 RB7618 4094692 4096143 - electron transport protein ykgF- 4Fe-4S containing oxidoreductase PMID: 97426617 PMID: 9278503 best DB hits: BLAST: swissprot:P77536%3B YKGF_ECOLI HYPOTHETICAL 53.1 KD PROTEIN IN%3B E%3D5e-89 gb:AAG54641.1%3B AE005208_9 (AE005208) orf%2C hypothetical protein%3B E%3D9e-89 pir:T36429%3B probable iron-sulfur protein SCF43A.06 [similarity] -%3B E%3D1e-86 COG: ykgF%3B COG1139 Uncharacterized conserved protein containing a%3B E%3D5e-90 AF0506%3B COG0247 Fe-S oxidoreductases%3B E%3D2e-05 PFAM: PF00037%3B 4Fe-4S binding domain%3B E%3D0.43 gene gene4293 http://www.ncbi.nlm.nih.gov/gene/?term=RB7618 RB7619 RB7619 RB7619 4096174 4097010 - Fe-S oxidoreductase best DB hits: BLAST: pir:T36428%3B hypothetical protein SCF43A.05 - Streptomyces coelicolor%3B E%3D3e-48 ddbj:BAB05551.1%3B (AP001513) glycolate oxidase [Bacillus%3B E%3D1e-39 pir:H75337%3B fumarate reductase-related protein - Deinococcus%3B E%3D7e-39 COG: BH1832%3B COG0247 Fe-S oxidoreductases%3B E%3D1e-40 MJ0863%3B COG2048 Heterodisulfide reductase subunit B%3B E%3D1e-05 MJ0092_2%3B COG0247 Fe-S oxidoreductases%3B E%3D7e-05 PFAM: PF02754%3B Domain of unknown function (DUF224)%3B E%3D9.2e-10 gene gene4294 http://www.ncbi.nlm.nih.gov/gene/?term=RB7619 RB7620 RB7620 RB7620 4096965 4097114 - hypothetical protein gene gene4295 http://www.ncbi.nlm.nih.gov/gene/?term=RB7620 RB7621 RB7621 RB7621 4097160 4098164 + Fe-S oxidoreductase best DB hits: BLAST: swissprot:Q57699%3B FER5_METJA FERREDOXIN MJ0251 -----%3B E%3D8e-10 pir:B72286%3B ferredoxin - Thermotoga maritima (strain MSB8) -----%3B E%3D9e-09 pir:B72206%3B ferredoxin - Thermotoga maritima (strain MSB8) -----%3B E%3D1e-05 COG: MJ0251%3B COG1146 Ferredoxin 3%3B E%3D7e-11 TM1292%3B COG1149 MinD superfamily P-loop ATPase containing an%3B E%3D0.002 AF0427%3B COG1146 Ferredoxin 3%3B E%3D0.004 PFAM: PF00037%3B 4Fe-4S binding domain%3B E%3D0.0025 gene gene4296 http://www.ncbi.nlm.nih.gov/gene/?term=RB7621 RB7623 RB7623 fumC fumC 4098290 4099714 - fumarate hydratase class II family (does not require metal)%3B tetrameric enzyme%3B fumarase C%3B reversibly converts (S)-malate to fumarate and water%3B functions in the TCA cycle gene gene4297 http://www.ncbi.nlm.nih.gov/gene/?term=RB7623 RB7625 RB7625 idnT idnT 4099907 4101862 + Gnt-II system L-idonate transporter PMID: 9658018 best DB hits: BLAST: swissprot:P39344%3B IDNT_ECOLI GNT-II SYSTEM L-IDONATE TRANSPORTER%3B E%3D1e-14 ddbj:BAA83912.1%3B (AB024550) GNTP [Bacillus halodurans] -----%3B E%3D1e-14 swissprot:Q9ZIJ1%3B GNUT_PSEAE GLUCONATE PERMEASE ----- pir:%3B E%3D4e-12 COG: BH0805%3B COG2610 H+/gluconate symporter and related permeases%3B E%3D1e-15 PFAM: PF02447%3B GntP family permease%3B E%3D2.5e-34 gene gene4298 http://www.ncbi.nlm.nih.gov/gene/?term=RB7625 RB7626 RB7626 RB7626 4101843 4102148 - hypothetical protein gene gene4299 http://www.ncbi.nlm.nih.gov/gene/?term=RB7626 RB7627 RB7627 RB7627 4102093 4103661 - signal transduction protein best DB hits: BLAST: gb:AAF34762.1%3B AF228345_1 (AF228345) unknown [Listeria%3B E%3D6e-93 ddbj:BAB06097.1%3B (AP001515) BH2378~~unknown conserved protein%3B E%3D2e-91 pir:F69884%3B conserved hypothetical protein ymdA - Bacillus subtilis%3B E%3D1e-89 COG: BH2378%3B COG1418 Predicted HD superfamily hydrolase%3B E%3D2e-92 PFAM: PF00261%3B Tropomyosin%3B E%3D0.57 PF00013%3B KH domain%3B E%3D6.3e-07 PF01966%3B HD domain%3B E%3D3.4e-21 gene gene4300 http://www.ncbi.nlm.nih.gov/gene/?term=RB7627 RB7628 RB7628 RB7628 4103661 4104029 - hypothetical protein gene gene4301 http://www.ncbi.nlm.nih.gov/gene/?term=RB7628 RB7629 RB7629 mesJ mesJ 4103944 4105137 + cell cycle protein homolog mesJ PMID: 99061957 best DB hits: BLAST: pir:T31465%3B cell cycle protein homolog mesJ - Heliobacillus mobilis%3B E%3D1e-31 swissprot:Q9WZ48%3B Y579_THEMA HYPOTHETICAL PROTEIN TM0579 -----%3B E%3D7e-24 pir:F75424%3B probable cell cycle protein MesJcytosine%3B E%3D2e-21 COG: TM0579%3B COG0037 Predicted ATPase of the PP-loop superfamily%3B E%3D6e-25 mesJ%3B COG0037 Predicted ATPase of the PP-loop superfamily implicated%3B E%3D1e-17 TP0373%3B COG0037 Predicted ATPase of the PP-loop superfamily%3B E%3D6e-17 PFAM: PF01171%3B Uncharacterized protein family UPF00%3B E%3D0.044 gene gene4302 http://www.ncbi.nlm.nih.gov/gene/?term=RB7629 RB763 RB763 RB763 409112 411349 + iduronate-2-sulfatase PMID: 8244397 PMID: 8325651 best DB hits: BLAST: gb:AAA16877.1%3B (L13329) iduronate-2-sulfatase [Homo sapiens]%3B E%3D7e-39 gb:AAB33747.1%3B iduronate-2-sulfatase%2C IDS {EC 3.1.6.13} [human%2C%3B E%3D3e-38 gb:AAA37880.1%3B (L07921) iduronate sulfatase [Mus musculus]%3B E%3D5e-36 COG: yidJ%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D3e-26 PFAM: PF00884%3B Sulfatase%3B E%3D2e-26 gene gene406 http://www.ncbi.nlm.nih.gov/gene/?term=RB763 RB7631 RB7631 RB7631 4105185 4105418 + hypothetical protein gene gene4303 http://www.ncbi.nlm.nih.gov/gene/?term=RB7631 RB7632 RB7632 RB7632 4105304 4105450 - hypothetical protein gene gene4304 http://www.ncbi.nlm.nih.gov/gene/?term=RB7632 RB7633 RB7633 natA natA 4105449 4106270 + sodium ABC transporter ATP-binding protein best DB hits: BLAST: pir:C69049%3B ABC transporter (ATP-binding protein) - Methanobacterium%3B E%3D5e-47 swissprot:P46903%3B NATA_BACSU ATP-BINDING TRANSPORT PROTEIN NATA%3B E%3D2e-46 pir:F82572%3B sodium ABC transporter ATP-binding protein XF2329%3B E%3D5e-46 COG: MTH1370%3B COG1131 ABC-type multidrug transport system%2C ATPase%3B E%3D5e-48 PFAM: PF02223%3B Thymidylate kinase%3B E%3D0.42 PF00005%3B ABC transporter%3B E%3D1.6e-61 gene gene4305 http://www.ncbi.nlm.nih.gov/gene/?term=RB7633 RB7634 RB7634 natB natB 4106267 4108588 + sodium extrusion protein NatB best DB hits: BLAST: pir:A75459%3B sodium extrusion protein NatB - Deinococcus radiodurans%3B E%3D2e-15 swissprot:P46904%3B NATB_BACSU PROTEIN NATB ----- pir: B69666%3B E%3D1e-10 ddbj:BAA22237.1%3B (AB000617) NatB [Bacillus subtilis]%3B E%3D5e-05 COG: DR0926%3B COG1668 ATP-dependent Na+ efflux pump membrane component%3B E%3D1e-16 BS_ydiL%3B COG1266 Predicted metal-dependent membrane protease%3B E%3D1e-04 PFAM: PF02517%3B CAAX amino terminal protease%3B E%3D1.1e-19 gene gene4306 http://www.ncbi.nlm.nih.gov/gene/?term=RB7634 RB7637 RB7637 RB7637 4108602 4110038 - hypothetical protein gene gene4307 http://www.ncbi.nlm.nih.gov/gene/?term=RB7637 RB7638 RB7638 RB7638 4109953 4110333 + hypothetical protein gene gene4308 http://www.ncbi.nlm.nih.gov/gene/?term=RB7638 RB7641 RB7641 RB7641 4110356 4110484 - hypothetical protein gene gene4309 http://www.ncbi.nlm.nih.gov/gene/?term=RB7641 RB7643 RB7643 RB7643 4110498 4111352 - dolichyl-phosphate hexose synthase best DB hits: BLAST: pir:S74796%3B hypothetical protein sll1020 - Synechocystis sp. (strain%3B E%3D2e-34 pir:A75176%3B dolichyl-phosphate mannose synthase related protein%3B E%3D1e-20 pir:D71038%3B hypothetical protein PH1596 - Pyrococcus horikoshii%3B E%3D2e-19 COG: sll1020%3B COG0463 Glycosyltransferases involved in cell wall%3B E%3D2e-35 PFAM: PF00535%3B Glycosyl transferase%3B E%3D1.3e-41 gene gene4310 http://www.ncbi.nlm.nih.gov/gene/?term=RB7643 RB7645 RB7645 RB7645 4111483 4111716 - hypothetical protein gene gene4311 http://www.ncbi.nlm.nih.gov/gene/?term=RB7645 RB7646 RB7646 RB7646 4111735 4111923 + hypothetical protein gene gene4312 http://www.ncbi.nlm.nih.gov/gene/?term=RB7646 RB7647 RB7647 RB7647 4111931 4112152 + hypothetical protein gene gene4313 http://www.ncbi.nlm.nih.gov/gene/?term=RB7647 RB7648 RB7648 RB7648 4112085 4112402 - hypothetical protein gene gene4314 http://www.ncbi.nlm.nih.gov/gene/?term=RB7648 RB7649 RB7649 RB7649 4112093 4112386 - hypothetical protein gene gene4315 http://www.ncbi.nlm.nih.gov/gene/?term=RB7649 RB7651 RB7651 RB7651 4112383 4112517 - hypothetical protein gene gene4316 http://www.ncbi.nlm.nih.gov/gene/?term=RB7651 RB7652 RB7652 mdh mdh 4112505 4113452 + malate dehydrogenase PMID: 8661927 PMID: 3133356 best DB hits: BLAST: swissprot:P80040%3B MDH_CHLAU MALATE DEHYDROGENASE ----- embl:%3B E%3D3e-86 swissprot:Q9X4K8%3B MDH_BACTC MALATE DEHYDROGENASE ----- gb:%3B E%3D1e-83 swissprot:Q59202%3B MDH_BACIS MALATE DEHYDROGENASE ----- pir:%3B E%3D1e-83 COG: BH3158%3B COG0039 Malate/lactate dehydrogenases%3B E%3D3e-81 PFAM: PF00984%3B UDP-glucose/GDP-mannose dehydro%3B E%3D0.28 PF00056%3B lactate/malate dehydrogenase%2C N%3B E%3D1.3e-43 PF02866%3B lactate/malate dehydrogenase%2C a%3B E%3D1.5e-41 gene gene4317 http://www.ncbi.nlm.nih.gov/gene/?term=RB7652 RB7655 RB7655 RB7655 4113482 4113631 - hypothetical protein gene gene4318 http://www.ncbi.nlm.nih.gov/gene/?term=RB7655 RB7658 RB7658 RB7658 4113652 4114290 + signal peptide best DB hits: PFAM: PF02432%3B Fimbrial%2C major and minor subuni%3B E%3D0.17 gene gene4319 http://www.ncbi.nlm.nih.gov/gene/?term=RB7658 RB7661 RB7661 hisC hisC 4114441 4115529 + histidinol-phosphate aminotransferase PMID: 1400209 best DB hits: BLAST: swissprot:P73807%3B HIS8_SYNY3 HISTIDINOL-PHOSPHATE AMINOTRANSFERASE%3B E%3D1e-56 swissprot:P45358%3B HIS8_ACEXY HISTIDINOL-PHOSPHATE AMINOTRANSFERASE%3B E%3D2e-52 gb:AAK00147.1%3B AF222753_2 (AF222753) aminotransferase%3B E%3D2e-43 COG: sll1958%3B COG0079 Histidinol-phosphate aminotransferase/Tyrosine%3B E%3D1e-57 PFAM: PF00155%3B Aminotransferase class-I%3B E%3D5.1e-06 PF00222%3B Aminotransferase class-II%3B E%3D1.3e-17 gene gene4320 http://www.ncbi.nlm.nih.gov/gene/?term=RB7661 RB7662 RB7662 hisBD hisBD 4115526 4116134 + imidazoleglycerol-phosphate dehydratase best DB hits: BLAST: ddbj:BAB07300.1%3B (AP001519) imidazoleglycerol-phosphate%3B E%3D3e-49 swissprot:O33564%3B HIS7_RHOSH IMIDAZOLEGLYCEROL-PHOSPHATE%3B E%3D1e-48 swissprot:P34047%3B HIS7_ARATH IMIDAZOLEGLYCEROL-PHOSPHATE%3B E%3D2e-48 COG: BH3581%3B COG0131 Imidazoleglycerol-phosphate dehydratase%3B E%3D3e-50 PFAM: PF00475%3B Imidazoleglycerol-phosphate dehydrat%3B E%3D7e-96 gene gene4321 http://www.ncbi.nlm.nih.gov/gene/?term=RB7662 RB7663 RB7663 RB7663 4116230 4116733 - hypothetical protein best DB hits: BLAST: swissprot:O83845%3B Y875_TREPA HYPOTHETICAL PROTEIN TP0875 -----%3B E%3D1e-09 pir:H72229%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D2e-08 ddbj:BAB04264.1%3B (AP001508) BH0545~~unknown conserved protein%3B E%3D1e-05 COG: TP0875%3B COG0802 Predicted ATPase or kinase%3B E%3D1e-10 PFAM: PF02367%3B Uncharacterised P-loop hydrolase UPF%3B E%3D3.9e-22 gene gene4322 http://www.ncbi.nlm.nih.gov/gene/?term=RB7663 RB7665 RB7665 RB7665 4116710 4116979 + hypothetical protein gene gene4323 http://www.ncbi.nlm.nih.gov/gene/?term=RB7665 RB7666 RB7666 RB7666 4116766 4116984 - hypothetical protein gene gene4324 http://www.ncbi.nlm.nih.gov/gene/?term=RB7666 RB7667 RB7667 RB7667 4116981 4117097 - hypothetical protein gene gene4325 http://www.ncbi.nlm.nih.gov/gene/?term=RB7667 RB7668 RB7668 RB7668 4117114 4117797 + malate synthase PMID: 8547819 best DB hits: BLAST: swissprot:P45458%3B MASY_SOYBN MALATE SYNTHASE%2C GLYOXYSOMAL (MS)%3B E%3D0.60 gene gene4326 http://www.ncbi.nlm.nih.gov/gene/?term=RB7668 RB767 RB767 RB767 411420 412355 + signal peptide best DB hits: PFAM: PF01453%3B Lectin (probable mannose binding)%3B E%3D0.047 gene gene407 http://www.ncbi.nlm.nih.gov/gene/?term=RB767 RB7672 RB7672 RB7672 4117946 4119253 + hypothetical protein gene gene4327 http://www.ncbi.nlm.nih.gov/gene/?term=RB7672 RB7673 RB7673 RB7673 4119234 4120808 - periplasmatic serine protease best DB hits: BLAST: ddbj:BAB05075.1%3B (AP001511) BH1356~~unknown conserved protein%3B E%3D1e-25 swissprot:P54465%3B YQEZ_BACSU HYPOTHETICAL 46.5 KD PROTEIN IN%3B E%3D6e-22 gb:AAB89465.1%3B (AE000979) nodulation protein NfeD (nfeD)%3B E%3D8e-04 COG: BH1356_1%3B COG1030 Periplasmic serine proteases (ClpP class)%3B E%3D1e-17 BH1356_2%3B COG1585 Membrane protein implicated in regulation of%3B E%3D1e-07 AF1781_1%3B COG1030 Periplasmic serine proteases (ClpP class)%3B E%3D7e-05 PFAM: PF01957%3B Protein of unknown function DUF107%3B E%3D0.53 gene gene4328 http://www.ncbi.nlm.nih.gov/gene/?term=RB7673 RB7675 RB7675 trkH trkH 4120780 4122597 - TRK potassium uptake system protein (trkH) PMID: 7896723 best DB hits: BLAST: gb:AAB90400.1%3B (AE001046) TRK potassium uptake system protein%3B E%3D8e-61 pir:G82037%3B potassium uptake protein TrkH VC2756 [imported] - Vibrio%3B E%3D4e-49 swissprot:P44843%3B TRKH_HAEIN TRK SYSTEM POTASSIUM UPTAKE PROTEIN%3B E%3D1e-46 COG: AF0839%3B COG0168 Trk-type K+ transport systems%2C membrane components%3B E%3D8e-62 NMB0661_2%3B COG0168 Trk-type K+ transport systems%2C membrane%3B E%3D1e-36 PA3210%3B COG0168 Trk-type K+ transport systems%2C membrane components%3B E%3D1e-36 PFAM: PF02386%3B Sodium transport protein%3B E%3D1.1e-54 gene gene4329 http://www.ncbi.nlm.nih.gov/gene/?term=RB7675 RB7678 RB7678 pcxB pcxB 4122659 4123339 - protocatechuate 3%2C4-dioxygenase subunit beta PMID: 8407791 best DB hits: BLAST: pir:E83626%3B protocatechuate 3%2C4-dioxygenase%2C beta subunit PA0153%3B E%3D1e-14 pir:T35018%3B protocatechuate 3%2C4-dioxygenase beta chain -%3B E%3D1e-14 gb:AAF65837.1%3B AF253466_3 (AF253466) protocatechuate%3B E%3D3e-14 PFAM: PF00652%3B QXW lectin repeat%3B E%3D0.28 PF00775%3B Dioxygenase%3B E%3D3.6e-18 gene gene4330 http://www.ncbi.nlm.nih.gov/gene/?term=RB7678 RB7681 RB7681 RB7681 4123209 4123523 - hypothetical protein gene gene4331 http://www.ncbi.nlm.nih.gov/gene/?term=RB7681 RB7682 RB7682 RB7682 4123608 4125095 + hypothetical protein gene gene4332 http://www.ncbi.nlm.nih.gov/gene/?term=RB7682 RB7684 RB7684 RB7684 4125274 4125573 + hypothetical protein gene gene4333 http://www.ncbi.nlm.nih.gov/gene/?term=RB7684 RB7685 RB7685 RB7685 4125633 4126799 + hypothetical protein best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene4334 http://www.ncbi.nlm.nih.gov/gene/?term=RB7685 RB7688 RB7688 RB7688 4126912 4127307 + hypothetical protein gene gene4335 http://www.ncbi.nlm.nih.gov/gene/?term=RB7688 RB7689 RB7689 RB7689 4127213 4127620 + signal peptide gene gene4336 http://www.ncbi.nlm.nih.gov/gene/?term=RB7689 RB7692 RB7692 RB7692 4127641 4128903 + c-type cytochrome precursor- periplasmic heme binding protein PMID: 8063110 PMID: 8195067 PMID: 9808046 PMID: 11372197 best DB hits: BLAST: gb:AAD05531.1%3B (AF083240) c-type cytochrome precursor [Shewanella%3B E%3D0.74 swissprot:Q57142%3B C554_NITEU CYTOCHROME C-554 PRECURSOR (C554)%3B E%3D0.84 gene gene4337 http://www.ncbi.nlm.nih.gov/gene/?term=RB7692 RB7694 RB7694 RB7694 4128786 4130045 + hypothetical protein gene gene4338 http://www.ncbi.nlm.nih.gov/gene/?term=RB7694 RB7698 RB7698 RB7698 4130042 4131289 + hypothetical protein best DB hits: BLAST: ddbj:BAB05140.1%3B (AP001512) BH1421~~unknown conserved protein%3B E%3D0.16 gene gene4339 http://www.ncbi.nlm.nih.gov/gene/?term=RB7698 RB77 RB77 RB77 29168 29692 + hypothetical protein gene gene43 http://www.ncbi.nlm.nih.gov/gene/?term=RB77 RB7700 RB7700 RB7700 4131286 4131441 - hypothetical protein gene gene4340 http://www.ncbi.nlm.nih.gov/gene/?term=RB7700 RB7701 RB7701 RB7701 4131412 4131519 + hypothetical protein gene gene4341 http://www.ncbi.nlm.nih.gov/gene/?term=RB7701 RB7702 RB7702 RB7702 4131608 4131814 + hypothetical protein gene gene4342 http://www.ncbi.nlm.nih.gov/gene/?term=RB7702 RB7703 RB7703 RB7703 4131842 4132138 + hypothetical protein gene gene4343 http://www.ncbi.nlm.nih.gov/gene/?term=RB7703 RB7705 RB7705 moaB moaB 4132107 4132631 - molybdopterin precursor biosynthesis moaB PMID: 8361352 best DB hits: BLAST: pir:H69658%3B molybdopterin precursor biosynthesis moaB - Bacillus%3B E%3D9e-25 ddbj:BAB06741.1%3B (AP001517) molybdopterin precursor biosynthesis%3B E%3D4e-22 gb:AAG20033.1%3B (AE005084) molybdenum cofactor biosynthesis%3B E%3D7e-21 COG: BS_moaB%3B COG0521 Molybdopterin biosynthesis enzymes%3B E%3D9e-26 PFAM: PF00994%3B Molybdenum cofactor biosynthesi%3B E%3D0.062 gene gene4344 http://www.ncbi.nlm.nih.gov/gene/?term=RB7705 RB7706 RB7706 ptfA ptfA 4132628 4134397 - fructose specific permease PMID: 20175229 best DB hits: BLAST: ddbj:BAB03332.1%3B (AB035450) fructose specific permease%3B E%3D3e-07 pir:H69626%3B PTS fructose-specific enzyme IIBC component fruA -%3B E%3D5e-07 pir:B81941%3B probable regulatory protein NMA0946 [imported] -%3B E%3D9e-07 COG: BS_fruA_1%3B COG1762 Phosphotransferase system%3B E%3D5e-08 TP0755%3B COG1762 Phosphotransferase system mannitol/fructose-specific%3B E%3D6e-07 VC1826_1%3B COG1762 Phosphotransferase system%3B E%3D8e-07 gene gene4345 http://www.ncbi.nlm.nih.gov/gene/?term=RB7706 RB7709 RB7709 RB7709 4134343 4134747 - hypothetical protein gene gene4346 http://www.ncbi.nlm.nih.gov/gene/?term=RB7709 RB7710 RB7710 RB7710 4134606 4134917 - hypothetical protein gene gene4347 http://www.ncbi.nlm.nih.gov/gene/?term=RB7710 RB7711 RB7711 RB7711 4134709 4134894 + hypothetical protein gene gene4348 http://www.ncbi.nlm.nih.gov/gene/?term=RB7711 RB7712 RB7712 RB7712 4134885 4135025 + hypothetical protein gene gene4349 http://www.ncbi.nlm.nih.gov/gene/?term=RB7712 RB7713 RB7713 RB7713 4134987 4135688 - signal peptide gene gene4350 http://www.ncbi.nlm.nih.gov/gene/?term=RB7713 RB7714 RB7714 RB7714 4135754 4135918 - hypothetical protein gene gene4351 http://www.ncbi.nlm.nih.gov/gene/?term=RB7714 RB7716 RB7716 RB7716 4135891 4136097 + hypothetical protein gene gene4352 http://www.ncbi.nlm.nih.gov/gene/?term=RB7716 RB7717 RB7717 RB7717 4136155 4136316 + hypothetical protein gene gene4353 http://www.ncbi.nlm.nih.gov/gene/?term=RB7717 RB7718 RB7718 RB7718 4136242 4136418 - hypothetical protein gene gene4354 http://www.ncbi.nlm.nih.gov/gene/?term=RB7718 RB772 RB772 RB772 412481 413953 + N-acetylgalactosamine 6-sulfate sulfatase (GALNS) PMID: 8020961 best DB hits: BLAST: ddbj:BAA04535.1%3B (D17629) N-acetylgalactosamine 6-sulfate%3B E%3D3e-56 pir:S07089%3B arylsulfatase (EC 3.1.6.1) - sea urchin (Lytechinus%3B E%3D4e-56 embl:CAA34667.1%3B (X16679) arylsulfatase [Hemicentrotus%3B E%3D6e-56 COG: PA0183%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D1e-29 PA1689%3B COG1368 Phosphoglycerol transferase and related proteins%2C%3B E%3D6e-07 PA2333%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D5e-05 PFAM: PF00884%3B Sulfatase%3B E%3D3.9e-110 gene gene408 http://www.ncbi.nlm.nih.gov/gene/?term=RB772 RB7722 RB7722 RB7722 4136415 4137251 - hypothetical protein gene gene4355 http://www.ncbi.nlm.nih.gov/gene/?term=RB7722 RB7723 RB7723 RB7723 4137186 4137386 + hypothetical protein gene gene4356 http://www.ncbi.nlm.nih.gov/gene/?term=RB7723 RB7726 RB7726 RB7726 4137563 4138534 - hypothetical protein gene gene4357 http://www.ncbi.nlm.nih.gov/gene/?term=RB7726 RB7727 RB7727 RB7727 4138569 4138811 + hypothetical protein gene gene4358 http://www.ncbi.nlm.nih.gov/gene/?term=RB7727 RB7728 RB7728 RB7728 4138779 4139270 - signal peptide gene gene4359 http://www.ncbi.nlm.nih.gov/gene/?term=RB7728 RB7729 RB7729 RB7729 4139239 4139523 - hypothetical protein gene gene4360 http://www.ncbi.nlm.nih.gov/gene/?term=RB7729 RB773 RB773 RB773 413727 415415 + arylsulfatase PMID: 3181160 best DB hits: BLAST: pir:S07089%3B arylsulfatase (EC 3.1.6.1) - sea urchin (Lytechinus%3B E%3D2e-29 swissprot:P14000%3B ARS_HEMPU ARYLSULFATASE PRECURSOR (ARYL-SULFATE%3B E%3D2e-29 embl:CAA34667.1%3B (X16679) arylsulfatase [Hemicentrotus%3B E%3D2e-29 COG: ydeN%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D3e-25 VC2041%3B COG3083 Predicted hydrolase of alkaline phosphatase%3B E%3D6e-05 VNG0061C%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D9e-05 PFAM: PF00884%3B Sulfatase%3B E%3D6.3e-50 gene gene409 http://www.ncbi.nlm.nih.gov/gene/?term=RB773 RB7730 RB7730 RB7730 4139598 4140044 - hypothetical protein gene gene4361 http://www.ncbi.nlm.nih.gov/gene/?term=RB7730 RB7731 RB7731 RB7731 4140162 4140488 - hypothetical protein gene gene4362 http://www.ncbi.nlm.nih.gov/gene/?term=RB7731 RB7733 RB7733 RB7733 4140525 4140734 - hypothetical protein gene gene4363 http://www.ncbi.nlm.nih.gov/gene/?term=RB7733 RB7734 RB7734 RB7734 4140699 4142543 + hypothetical protein gene gene4364 http://www.ncbi.nlm.nih.gov/gene/?term=RB7734 RB7736 RB7736 RB7736 4142604 4142771 - hypothetical protein gene gene4365 http://www.ncbi.nlm.nih.gov/gene/?term=RB7736 RB7737 RB7737 RB7737 4142861 4143112 - hypothetical protein gene gene4366 http://www.ncbi.nlm.nih.gov/gene/?term=RB7737 RB7739 RB7739 RB7739 4143120 4144664 - hypothetical protein gene gene4367 http://www.ncbi.nlm.nih.gov/gene/?term=RB7739 RB774 RB774 RB774 415412 416224 + large multi-functional protein PMID: 8843436 best DB hits: BLAST: embl:CAB45032.1%3B (AL078635) large multi-functional%3B E%3D7e-23 embl:CAB58265.1%3B (AL121849) multi-domain protein%3B E%3D5e-21 pir:T36423%3B probable large%2C multifunctional secreted protein -%3B E%3D0.048 gene gene410 http://www.ncbi.nlm.nih.gov/gene/?term=RB774 RB7741 RB7741 RB7741 4144689 4144817 + hypothetical protein gene gene4368 http://www.ncbi.nlm.nih.gov/gene/?term=RB7741 RB7742 RB7742 RB7742 4144793 4145209 - hypothetical protein gene gene4369 http://www.ncbi.nlm.nih.gov/gene/?term=RB7742 RB7743 RB7743 RB7743 4145254 4146072 - hypothetical protein PMID: 20175755 best DB hits: BLAST: embl:CAB72079.1%3B (AJ391284) hypothetical protein [Neisseria%3B E%3D0.028 pir:D81191%3B hypothetical protein NMB0509 [imported] - Neisseria%3B E%3D0.028 gene gene4370 http://www.ncbi.nlm.nih.gov/gene/?term=RB7743 RB7744 RB7744 RB7744 4146120 4146569 - hypothetical protein gene gene4371 http://www.ncbi.nlm.nih.gov/gene/?term=RB7744 RB7745 RB7745 prtB prtB 4146480 4149623 + serine protease homologue- secreted serine protease PMID: 11158351 best DB hits: BLAST: ddbj:BAA36466.1%3B (AB015053) serine protease homologue%3B E%3D1e-19 gb:AAF80995.1%3B (AF216702) PrtB [Pseudomonas fluorescens]%3B E%3D5e-19 pir:JC5568%3B serine proteinase h1 (EC 3.4.-.-) precursor - Serratia%3B E%3D4e-18 COG: PA3535_1%3B COG1404 Subtilisin-like serine proteases%3B E%3D3e-10 PFAM: PF02223%3B Thymidylate kinase%3B E%3D0.27 gene gene4372 http://www.ncbi.nlm.nih.gov/gene/?term=RB7745 RB7746 RB7746 RB7746 4149694 4150269 - sulfatase atsD best DB hits: BLAST: pir:B70535%3B probable sulfatase (EC 3.1.6.-) atsD - Mycobacterium%3B E%3D7e-11 pir:E70533%3B probable sulfatase (EC 3.1.6.-) atsB - Mycobacterium%3B E%3D4e-08 pir:B70643%3B probable sulfatase (EC 3.1.6.-) atsA - Mycobacterium%3B E%3D0.22 COG: Rv0663%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D7e-12 gene gene4373 http://www.ncbi.nlm.nih.gov/gene/?term=RB7746 RB7747 RB7747 RB7747 4150256 4150549 + hypothetical protein gene gene4374 http://www.ncbi.nlm.nih.gov/gene/?term=RB7747 RB7748 RB7748 RB7748 4150491 4150715 + hypothetical protein gene gene4375 http://www.ncbi.nlm.nih.gov/gene/?term=RB7748 RB7749 RB7749 RB7749 4150677 4150979 - hypothetical protein gene gene4376 http://www.ncbi.nlm.nih.gov/gene/?term=RB7749 RB7750 RB7750 RB7750 4151023 4152765 - hypothetical protein PMID: 20365717 best DB hits: BLAST: pir:H82841%3B conserved hypothetical protein XF0161 [imported] -%3B E%3D1e-06 gb:AAB48483.1%3B (U87814) PEST phosphatase interacting protein [Mus%3B E%3D0.060 embl:CAB99171.1%3B (AL390189) related to transport protein USO1%3B E%3D0.15 gene gene4377 http://www.ncbi.nlm.nih.gov/gene/?term=RB7750 RB7752 RB7752 RB7752 4152765 4153019 - hypothetical protein gene gene4378 http://www.ncbi.nlm.nih.gov/gene/?term=RB7752 RB7753 RB7753 RB7753 4153022 4153987 - hypothetical protein gene gene4379 http://www.ncbi.nlm.nih.gov/gene/?term=RB7753 RB7754 RB7754 RB7754 4154033 4154398 - transcriptional regulator PMID: 7642487 best DB hits: BLAST: pir:E72348%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D0.001 ddbj:BAB05844.1%3B (AP001514) transcriptional regulator of%3B E%3D0.006 swissprot:P06533%3B SINR_BACSU SINR PROTEIN ----- pir: B25159%3B E%3D0.010 COG: TM0656%3B COG1396 Predicted transcriptional regulators%3B E%3D1e-04 PFAM: PF01381%3B Helix-turn-helix%3B E%3D1.2e-07 gene gene4380 http://www.ncbi.nlm.nih.gov/gene/?term=RB7754 RB7755 RB7755 RB7755 4154446 4154631 + hypothetical protein gene gene4381 http://www.ncbi.nlm.nih.gov/gene/?term=RB7755 RB7756 RB7756 RB7756 4154488 4154712 - hypothetical protein gene gene4382 http://www.ncbi.nlm.nih.gov/gene/?term=RB7756 RB7757 RB7757 RB7757 4154809 4155177 - hypothetical protein PMID: 21101824 best DB hits: BLAST: gb:AAG60904.1%3B AF322013_23 (AF322013) ID479 [Bradyrhizobium%3B E%3D2e-04 gene gene4383 http://www.ncbi.nlm.nih.gov/gene/?term=RB7757 RB7759 RB7759 RB7759 4155419 4156051 + hypothetical protein gene gene4384 http://www.ncbi.nlm.nih.gov/gene/?term=RB7759 RB776 RB776 RB776 416203 416391 - hypothetical protein gene gene411 http://www.ncbi.nlm.nih.gov/gene/?term=RB776 RB7760 RB7760 RB7760 4155488 4156900 - hypothetical protein gene gene4385 http://www.ncbi.nlm.nih.gov/gene/?term=RB7760 RB7762 RB7762 RB7762 4156869 4159847 - xanthan lyase PMID: 11157235 PMID: 10347025 PMID: 10966413 best DB hits: BLAST: ddbj:BAB21059.1%3B (AB037178) xanthan lyase [Bacillus sp. GL1]%3B E%3D5e-08 gb:AAG24953.1%3B AF242413_1 (AF242413) XalA [Paenibacillus%3B E%3D3e-07 gb:AAG42262.1%3B AF318176_1 (AF318176) xanthan lyase XalB%3B E%3D0.003 gene gene4386 http://www.ncbi.nlm.nih.gov/gene/?term=RB7762 RB7765 RB7765 RB7765 4160044 4160757 - hypothetical protein best DB hits: BLAST: pir:T32623%3B hypothetical protein F42A6.9 - Caenorhabditis elegans%3B E%3D0.39 gene gene4387 http://www.ncbi.nlm.nih.gov/gene/?term=RB7765 RB7769 RB7769 GALNS GALNS 4160901 4162406 - N-acetylgalactosamine 6-sulfate sulfatase (GALNS) PMID: 8020961 best DB hits: BLAST: ddbj:BAA04535.1%3B (D17629) N-acetylgalactosamine 6-sulfate%3B E%3D9e-25 gb:AAF63858.1%3B (AF112242) N-acetylgalactosamine-6-sulfate%3B E%3D2e-23 embl:CAA36398.1%3B (X52150) arylsulphatase a [Homo sapiens]%3B E%3D4e-23 COG: ydeN%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D1e-21 PFAM: PF00884%3B Sulfatase%3B E%3D3.8e-39 gene gene4388 http://www.ncbi.nlm.nih.gov/gene/?term=RB7769 RB777 RB777 RB777 416395 417333 + outer membrane secretion protein PMID: 9256491 best DB hits: BLAST: pir:T03516%3B probable outer membrane secretion protein - Rhodobacter%3B E%3D0.040 gb:AAA21546.1%3B (U13767) HlyA [Anabaena sp.]%3B E%3D0.18 gb:AAF36415.1%3B (AF141932) rhizobiocin RzcA [Rhizobium leguminosarum%3B E%3D0.30 gene gene412 http://www.ncbi.nlm.nih.gov/gene/?term=RB777 RB7771 RB7771 RB7771 4162365 4162472 + hypothetical protein gene gene4389 http://www.ncbi.nlm.nih.gov/gene/?term=RB7771 RB7772 RB7772 atsA atsA 4162474 4164597 + arylsulfatase PMID: 7744061 best DB hits: BLAST: swissprot:P51691%3B ARS_PSEAE ARYLSULFATASE (ARYL-SULFATE%3B E%3D2e-61 pir:S69336%3B arylsulfatase (EC 3.1.6.1) - Pseudomonas aeruginosa%3B E%3D2e-60 pir:E70533%3B probable sulfatase (EC 3.1.6.-) atsB - Mycobacterium%3B E%3D7e-53 COG: PA0183%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D2e-62 PFAM: PF00884%3B Sulfatase%3B E%3D3.2e-77 gene gene4390 http://www.ncbi.nlm.nih.gov/gene/?term=RB7772 RB7773 RB7773 RB7773 4164594 4167062 + NADH-dependant oxidoreductase PMID: 97000351 best DB hits: BLAST: embl:CAB62685.1%3B (AL133422) membrane protein.%3B E%3D6e-12 pir:A49911%3B NADH oxidase (hydrogen peroxide-forming) (EC 1.6.-.-) -%3B E%3D0.008 swissprot:P26829%3B DHNA_BACSP NADH DEHYDROGENASE (ALKYL%3B E%3D0.024 PFAM: PF01134%3B Glucose inhibited division prote%3B E%3D1.1e-05 PF00070%3B Pyridine nucleotide-disulphide o%3B E%3D1.1e-05 PF02032%3B Phytoene dehydrogenase related e%3B E%3D0.43 gene gene4391 http://www.ncbi.nlm.nih.gov/gene/?term=RB7773 RB7775 RB7775 RB7775 4165560 4167398 - hypothetical protein PMID: 20363099 best DB hits: BLAST: ddbj:BAB01977.1%3B (AP002065) gene_id:T31J18.6~~pir F71651~~similar%3B E%3D0.23 gene gene4392 http://www.ncbi.nlm.nih.gov/gene/?term=RB7775 RB7777 RB7777 nosR nosR 4167044 4168843 + NosR regulatory protein PMID: 20416234 best DB hits: BLAST: embl:CAB53350.1%3B (AJ010260) NosR protein [Paracoccus%3B E%3D0.001 gb:AAD09156.1%3B (AF047429) regulatory protein NosR [Achromobacter%3B E%3D0.001 embl:CAC03728.1%3B (AJ297529) RnfG protein [Pseudomonas stutzeri%3B E%3D0.094 gene gene4393 http://www.ncbi.nlm.nih.gov/gene/?term=RB7777 RB778 RB778 RB778 417532 418773 - signal peptide best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene413 http://www.ncbi.nlm.nih.gov/gene/?term=RB778 RB7781 RB7781 cyaA cyaA 4168833 4170992 - adenylate cyclase PMID: 9523018 PMID: 8418825 best DB hits: BLAST: swissprot:P40137%3B CYAA_STIAU ADENYLATE CYCLASE 1 (ATP%3B E%3D8e-24 pir:S74929%3B adenylate cyclase (EC 4.6.1.1) - Synechocystis sp.%3B E%3D1e-23 ddbj:BAA13997.1%3B (D89622) adenylate cyclase [Anabaena sp.]%3B E%3D4e-23 COG: sll0646%3B COG2114 Adenylate cyclase%2C family 3 (some proteins contain%3B E%3D1e-24 slr1991_2%3B COG2114 Adenylate cyclase%2C family 3 (some proteins%3B E%3D3e-08 Rv1625c%3B COG2114 Adenylate cyclase%2C family 3 (some proteins contain%3B E%3D4e-08 PFAM: PF00211%3B Adenylate and Guanylate cyclase%3B E%3D2.7e-39 gene gene4394 http://www.ncbi.nlm.nih.gov/gene/?term=RB7781 RB7785 RB7785 RB7785 4170800 4171828 - hypothetical protein PMID: 20150912 PMID: 97000351 best DB hits: BLAST: pir:B81402%3B hypothetical protein Cj0554 [imported] - Campylobacter%3B E%3D4e-57 embl:CAB56667.1%3B (AL121596) hypothetical protein SCF51A.15c%3B E%3D4e-54 gene gene4395 http://www.ncbi.nlm.nih.gov/gene/?term=RB7785 RB7786 RB7786 RB7786 4171854 4172318 - hypothetical protein gene gene4396 http://www.ncbi.nlm.nih.gov/gene/?term=RB7786 RB7789 RB7789 RB7789 4172308 4173246 + tolB protein [precursor] PMID: 8921895 best DB hits: BLAST: swissprot:P44677%3B TOLB_HAEIN TOLB PROTEIN PRECURSOR ----- pir:%3B E%3D0.67 pir:JC5213%3B tolB protein - Haemophilus influenzae ----- gb:%3B E%3D0.72 gene gene4397 http://www.ncbi.nlm.nih.gov/gene/?term=RB7789 RB779 RB779 RB779 418785 419045 - hypothetical protein gene gene414 http://www.ncbi.nlm.nih.gov/gene/?term=RB779 RB7790 RB7790 RB7790 4173233 4173502 + hypothetical protein gene gene4398 http://www.ncbi.nlm.nih.gov/gene/?term=RB7790 RB7791 RB7791 RB7791 4173444 4175045 + hypothetical protein PMID: 12024217 gene gene4399 http://www.ncbi.nlm.nih.gov/gene/?term=RB7791 RB7792 RB7792 RB7792 4173508 4174068 - signal peptide gene gene4400 http://www.ncbi.nlm.nih.gov/gene/?term=RB7792 RB7797 RB7797 nccH nccH 4175197 4175742 + RNA polymerase sigma factor nccH PMID: 7961470 best DB hits: BLAST: swissprot:Q44583%3B NCCH_ALCXX RNA POLYMERASE SIGMA FACTOR NCCH%3B E%3D6e-07 pir:H82073%3B RNA polymerase sigma-E factor VC2467 [imported] - Vibrio%3B E%3D3e-06 embl:CAB55345.1%3B (AJ010584) ECF sigma factor [Streptomyces%3B E%3D2e-05 COG: VC2467%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D3e-07 PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D9.7e-11 gene gene4401 http://www.ncbi.nlm.nih.gov/gene/?term=RB7797 RB7798 RB7798 pkn pkn 4175770 4178583 + serine/threonine-protein kinase PMID: 7774814 best DB hits: BLAST: embl:CAB94054.1%3B (AL358672) serinethreonine-protein%3B E%3D3e-29 pir:T35491%3B probable serinethreonine-specific protein kinase pkaF -%3B E%3D1e-25 gb:AAF79944.1%3B AF233851_2 (AF233851) eukaryotic-type%3B E%3D1e-25 COG: Rv0015c%3B COG0515 Serine/threonine protein kinases%3B E%3D3e-26 PFAM: PF00069%3B Protein kinase domain%3B E%3D7.1e-37 gene gene4402 http://www.ncbi.nlm.nih.gov/gene/?term=RB7798 RB7799 RB7799 RB7799 4178548 4178730 - hypothetical protein gene gene4403 http://www.ncbi.nlm.nih.gov/gene/?term=RB7799 RB7800 RB7800 RB7800 4178948 4179349 - hypothetical protein PMID: 11759840 gene gene4404 http://www.ncbi.nlm.nih.gov/gene/?term=RB7800 RB7801 RB7801 RB7801 4179441 4180505 - hypothetical protein gene gene4405 http://www.ncbi.nlm.nih.gov/gene/?term=RB7801 RB7803 RB7803 uroD uroD 4180502 4182523 - uroporphyrinogen III synthase%2C uroporhyrinogen decarboxylase best DB hits: BLAST: pir:D75432%3B uroporphyrinogen decarboxylase - Deinococcus radiodurans%3B E%3D2e-74 swissprot:Q9RV96%3B DCUP_DEIRA UROPORPHYRINOGEN DECARBOXYLASE%3B E%3D2e-74 swissprot:O69861%3B DCUP_STRCO UROPORPHYRINOGEN DECARBOXYLASE%3B E%3D1e-73 COG: DR1133%3B COG0407 Uroporphyrinogen-III decarboxylase%3B E%3D2e-75 Rv0260c_1%3B COG1587 Uroporphyrinogen-III synthase%3B E%3D7e-12 PFAM: PF02602%3B Uroporphyrinogen-III synthase HemD%3B E%3D4.3e-13 PF01208%3B Uroporphyrinogen decarboxylase (URO-%3B E%3D5.6e-144 gene gene4406 http://www.ncbi.nlm.nih.gov/gene/?term=RB7803 RB7807 RB7807 RB7807 4182504 4183319 + methyltransferase best DB hits: BLAST: pir:B69997%3B conserved hypothetical protein ytmQ - Bacillus subtilis%3B E%3D1e-15 pir:G82761%3B conserved hypothetical protein XF0784 [imported] -%3B E%3D3e-15 gb:AAK04847.1%3B AE006308_7 (AE006308) HYPOTHETICAL PROTEIN%3B E%3D1e-14 COG: BS_ytmQ%3B COG0220 Predicted S-adenosylmethionine-dependent%3B E%3D1e-16 PFAM: PF02390%3B methyltransferase%3B E%3D2e-41 gene gene4407 http://www.ncbi.nlm.nih.gov/gene/?term=RB7807 RB7812 RB7812 RB7812 4183621 4184409 - enoyl-CoA hydratase PMID: 98263372 best DB hits: BLAST: pir:B83395%3B probable enoyl-CoA hydrataseisomerase PA2013 [imported]%3B E%3D4e-17 pir:D72628%3B probable 3-hydroxybutyryl-CoA dehydratase APE1484 -%3B E%3D7e-16 gb:AAC24330.1%3B (AF029714) PhaB [Pseudomonas putida]%3B E%3D3e-14 COG: PA2013%3B COG1024 Enoyl-CoA hydratase/carnithine racemase%3B E%3D4e-18 PFAM: PF00378%3B Enoyl-CoA hydratase/isomerase%3B E%3D5.7e-27 gene gene4408 http://www.ncbi.nlm.nih.gov/gene/?term=RB7812 RB7813 RB7813 RB7813 4184462 4185385 - hypothetical protein PMID: 20437337 best DB hits: BLAST: pir:D83184%3B conserved hypothetical protein PA3683 [imported] -%3B E%3D4e-42 pir:E82234%3B conserved hypothetical protein VC1165 [imported] -%3B E%3D9e-42 swissprot:P37348%3B YECE_ECOLI HYPOTHETICAL 31.5 KD PROTEIN IN%3B E%3D1e-39 COG: PA3683%3B COG1801 Uncharacterized ACR%3B E%3D4e-43 PFAM: PF01904%3B Protein of unknown function D%3B E%3D1.6e-11 gene gene4409 http://www.ncbi.nlm.nih.gov/gene/?term=RB7813 RB7815 RB7815 RB7815 4185351 4185758 + hypothetical protein gene gene4410 http://www.ncbi.nlm.nih.gov/gene/?term=RB7815 RB7818 RB7818 rpsL rpsL 4185730 4186095 + 30S ribosomal protein S12 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone%3B located at the interface of the 30S and 50S subunits%2C it traverses the body of the 30S subunit contacting proteins on the other side%3B mutations in the S12 gene confer streptomycin resistance gene gene4411 http://www.ncbi.nlm.nih.gov/gene/?term=RB7818 RB782 RB782 RB782 419050 419298 - hypothetical protein gene gene415 http://www.ncbi.nlm.nih.gov/gene/?term=RB782 RB7820 RB7820 rpsG rpsG 4186170 4186643 + 30S ribosomal protein S7 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit gene gene4412 http://www.ncbi.nlm.nih.gov/gene/?term=RB7820 RB7821 RB7821 fusA fusA 4186706 4188880 + elongation factor G PMID: 8070396 PMID: 11054294 best DB hits: BLAST: embl:CAB81852.1%3B (AL161691) elongation factor G [Streptomyces%3B E%3D1e-147 swissprot:O66428%3B EFG_AQUAE ELONGATION FACTOR G (EF-G) -----%3B E%3D1e-145 swissprot:P38525%3B EFG_THEMA ELONGATION FACTOR G (EF-G) -----%3B E%3D1e-145 COG: aq_001%3B COG0480 Translation elongation and release factors (GTPases)%3B E%3D1e-146 jhp1118%3B COG0480 Translation elongation and release factors%3B E%3D1e-139 BH0131%3B COG0480 Translation elongation and release factors (GTPases)%3B E%3D1e-138 PFAM: PF01894%3B Uncharacterised protein family UPF%3B E%3D0.082 PF00009%3B Elongation factor Tu family%3B E%3D3.4e-123 PF00679%3B Elongation factor G C-terminus%3B E%3D1.2e-42 gene gene4413 http://www.ncbi.nlm.nih.gov/gene/?term=RB7821 RB7822 RB7822 RB7822 4189064 4189612 - hypothetical protein PMID: 20406833 best DB hits: BLAST: pir:G82206%3B hypothetical protein VC1375 [imported] - Vibrio cholerae%3B E%3D9e-09 gene gene4414 http://www.ncbi.nlm.nih.gov/gene/?term=RB7822 RB7823 RB7823 RB7823 4189704 4191209 - transaminase PMID: 8907187 PMID: 10029535 best DB hits: BLAST: pir:D70479%3B probable transaminase (EC 2.6.1.-) aspC2 [similarity] -%3B E%3D1e-111 pir:E83056%3B probable aminotransferase PA4715 [imported] -%3B E%3D1e-100 swissprot:P77434%3B YFDZ_ECOLI HYPOTHETICAL AMINOTRANSFERASE YFDZ%3B E%3D4e-97 COG: aq_2094%3B COG0436 PLP-dependent aminotransferases%3B E%3D1e-112 PFAM: PF00155%3B Aminotransferase class-I%3B E%3D7.9e-34 gene gene4415 http://www.ncbi.nlm.nih.gov/gene/?term=RB7823 RB7824 RB7824 RB7824 4191139 4191699 - hypothetical protein gene gene4416 http://www.ncbi.nlm.nih.gov/gene/?term=RB7824 RB7825 RB7825 RB7825 4191369 4191662 - hypothetical protein gene gene4417 http://www.ncbi.nlm.nih.gov/gene/?term=RB7825 RB7826 RB7826 RB7826 4191725 4191901 - hypothetical protein gene gene4418 http://www.ncbi.nlm.nih.gov/gene/?term=RB7826 RB7827 RB7827 RB7827 4191785 4191946 + hypothetical protein gene gene4419 http://www.ncbi.nlm.nih.gov/gene/?term=RB7827 RB7828 RB7828 RB7828 4191915 4192037 - hypothetical protein gene gene4420 http://www.ncbi.nlm.nih.gov/gene/?term=RB7828 RB7829 RB7829 rpsJ rpsJ 4192031 4192357 + 30S ribosomal protein S10 PMID: 7037196 PMID: 3892488 PMID: 7007073 best DB hits: BLAST: swissprot:P44378%3B RS10_HAEIN 30S RIBOSOMAL PROTEIN S10 -----%3B E%3D2e-26 pir:E81234%3B 30S ribosomal protein S10 NMB0140 [imported] - Neisseria%3B E%3D4e-25 swissprot:P48851%3B RS10_NEIGO 30S RIBOSOMAL PROTEIN S10 -----%3B E%3D6e-25 COG: HI0776%3B COG0051 Ribosomal protein S10%3B E%3D2e-27 PFAM: PF00338%3B Ribosomal protein S10p/S20e%3B E%3D2.8e-41 gene gene4421 http://www.ncbi.nlm.nih.gov/gene/?term=RB7829 RB783 RB783 RB783 419311 420540 - integral membrane efflux protein best DB hits: BLAST: swissprot:P74311%3B Y944_SYNY3 HYPOTHETICAL 42.4 KDA PROTEIN SLR0944%3B E%3D2e-86 pir:H81780%3B probable integral membrane efflux protein NMA2095%3B E%3D3e-47 gb:AAK04027.1%3B (AE006231) unknown [Pasteurella multocida]%3B E%3D7e-40 COG: slr0944%3B COG0798 Arsenite efflux pump ACR3 and related permeases%3B E%3D2e-87 PFAM: PF01758%3B Sodium Bile acid symporter family%3B E%3D7.8e-49 gene gene416 http://www.ncbi.nlm.nih.gov/gene/?term=RB783 RB7832 RB7832 RB7832 4192499 4192651 + hypothetical protein gene gene4422 http://www.ncbi.nlm.nih.gov/gene/?term=RB7832 RB7833 RB7833 rplC rplC 4192692 4193378 + 50S ribosomal protein L3 PMID: 3892488 PMID: 365579 best DB hits: BLAST: swissprot:P52860%3B RL3_THETH 50S RIBOSOMAL PROTEIN L3 -----%3B E%3D1e-47 embl:CAB82070.1%3B (AL161803) 50S ribosomal protein L3%3B E%3D7e-45 swissprot:P73320%3B RL3_SYNY3 50S RIBOSOMAL PROTEIN L3 -----%3B E%3D3e-42 COG: Rv0701%3B COG0087 Ribosomal protein L3%3B E%3D4e-43 PFAM: PF00297%3B Ribosomal protein L3%3B E%3D2.7e-71 gene gene4423 http://www.ncbi.nlm.nih.gov/gene/?term=RB7833 RB7834 RB7834 rplD rplD 4193390 4194058 + 50S ribosomal protein L4 L4 is important during the early stages of 50S assembly%3B it initially binds near the 5' end of the 23S rRNA gene gene4424 http://www.ncbi.nlm.nih.gov/gene/?term=RB7834 RB7836 RB7836 rplW rplW 4194060 4194383 + 50S ribosomal protein L23 PMID: 8790600 best DB hits: BLAST: swissprot:P55839%3B RL23_ACTAC 50S RIBOSOMAL PROTEIN L23 -----%3B E%3D1e-12 gb:AAK03497.1%3B (AE006177) RpL23 [Pasteurella multocida]%3B E%3D2e-12 pir:C83116%3B 50S ribosomal protein L23 PA4261 [imported] -%3B E%3D3e-12 COG: PA4261%3B COG0089 Ribosomal protein L23%3B E%3D3e-13 PFAM: PF00276%3B Ribosomal protein L23%3B E%3D6.9e-27 gene gene4425 http://www.ncbi.nlm.nih.gov/gene/?term=RB7836 RB7837 RB7837 rplB rplB 4194481 4195341 + 50S ribosomal protein L2 one of the primary rRNA-binding proteins%3B required for association of the 30S and 50S subunits to form the 70S ribosome%2C for tRNA binding and peptide bond formation gene gene4426 http://www.ncbi.nlm.nih.gov/gene/?term=RB7837 RB7838 RB7838 rpsS rpsS 4195376 4195645 + ribosomal protein S19 PMID: 3892488 PMID: 348496 PMID: 10094780 best DB hits: BLAST: pir:B82059%3B ribosomal protein S19 VC2592 [imported] - Vibrio%3B E%3D2e-23 swissprot:P02375%3B RS19_ECOLI 30S RIBOSOMAL PROTEIN S19 -----%3B E%3D2e-23 swissprot:P44385%3B RS19_HAEIN 30S RIBOSOMAL PROTEIN S19 -----%3B E%3D5e-23 COG: VC2592%3B COG0185 Ribosomal protein S19%3B E%3D2e-24 PFAM: PF00203%3B Ribosomal protein S19%3B E%3D3.7e-42 gene gene4427 http://www.ncbi.nlm.nih.gov/gene/?term=RB7838 RB7839 RB7839 rplV rplV 4195706 4196065 + 50S ribosomal protein L22 PMID: 3892488 PMID: 7007072 best DB hits: BLAST: pir:E81231%3B 50S ribosomal protein L22 NMB0147 [imported] - Neisseria%3B E%3D2e-17 swissprot:P02423%3B RL22_ECOLI 50S RIBOSOMAL PROTEIN L22 -----%3B E%3D9e-16 pir:A82059%3B ribosomal protein L22 VC2591 [imported] - Vibrio%3B E%3D3e-14 COG: NMB0147%3B COG0091 Ribosomal protein L22%3B E%3D2e-18 PFAM: PF00237%3B Ribosomal protein L22p/L17e%3B E%3D2.2e-31 gene gene4428 http://www.ncbi.nlm.nih.gov/gene/?term=RB7839 RB7840 RB7840 rpsC rpsC 4196161 4196871 + 30S ribosomal protein S3 PMID: 2222862 best DB hits: BLAST: swissprot:Q9Z9K8%3B RS3_BACHD 30S RIBOSOMAL PROTEIN S3 -----%3B E%3D4e-50 swissprot:O66437%3B RS3_AQUAE 30S RIBOSOMAL PROTEIN S3 -----%3B E%3D6e-50 pir:A81665%3B ribosomal protein S3 TC0809 [imported] - Chlamydia%3B E%3D1e-49 COG: BH0140%3B COG0092 Ribosomal protein S3%3B E%3D4e-51 PFAM: PF00417%3B Ribosomal protein S3%2C N-termin%3B E%3D1.2e-28 PF00013%3B KH domain%3B E%3D0.014 PF00189%3B Ribosomal protein S3%2C C-termin%3B E%3D4.1e-43 gene gene4429 http://www.ncbi.nlm.nih.gov/gene/?term=RB7840 RB7841 RB7841 rplP rplP 4196810 4197226 + 50S ribosomal protein L16 located in the peptidyl transferase center and may be involved in peptidyl transferase activity%3B similar to archaeal L10e gene gene4430 http://www.ncbi.nlm.nih.gov/gene/?term=RB7841 RB7846 RB7846 rpmC rpmC 4197405 4197623 + 50S ribosomal protein L29 PMID: 4018095 best DB hits: BLAST: embl:CAB82078.1%3B (AL161803) 50S ribosomal protein L29%3B E%3D3e-04 swissprot:O32989%3B RL29_MYCLE 50S RIBOSOMAL PROTEIN L29 -----%3B E%3D4e-04 swissprot:P95057%3B RL29_MYCTU 50S RIBOSOMAL PROTEIN L29 -----%3B E%3D0.002 COG: Rv0709%3B COG0255 Ribosomal protein L29%3B E%3D2e-04 PFAM: PF00831%3B Ribosomal L29 protein%3B E%3D2e-14 gene gene4431 http://www.ncbi.nlm.nih.gov/gene/?term=RB7846 RB7849 RB7849 rpsQ rpsQ 4197700 4198026 + 30S ribosomal protein S17 PMID: 344065 best DB hits: BLAST: swissprot:P02373%3B RS17_ECOLI 30S RIBOSOMAL PROTEIN S17 -----%3B E%3D1e-14 pir:E82058%3B ribosomal protein S17 VC2587 [imported] - Vibrio%3B E%3D2e-13 swissprot:P46175%3B RS17_BUCAK 30S RIBOSOMAL PROTEIN S17 -----%3B E%3D2e-13 COG: rpsQ%3B COG0186 Ribosomal protein S17%3B E%3D1e-15 PFAM: PF00366%3B Ribosomal protein S17%3B E%3D5.2e-27 gene gene4432 http://www.ncbi.nlm.nih.gov/gene/?term=RB7849 RB785 RB785 RB785 420625 420963 + hypothetical protein gene gene417 http://www.ncbi.nlm.nih.gov/gene/?term=RB785 RB7850 RB7850 rplN rplN 4198081 4198449 + 50S ribosomal protein L14 PMID: 2508062 PMID: 4018095 PMID: 8805509 best DB hits: BLAST: swissprot:P95062%3B RL14_MYCTU 50S RIBOSOMAL PROTEIN L14 -----%3B E%3D5e-32 swissprot:O32993%3B RL14_MYCLE 50S RIBOSOMAL PROTEIN L14 -----%3B E%3D5e-32 swissprot:Q9Z9K4%3B RL14_BACHD 50S RIBOSOMAL PROTEIN L14 -----%3B E%3D2e-31 COG: Rv0714%3B COG0093 Ribosomal protein L14%3B E%3D2e-32 PFAM: PF00238%3B Ribosomal protein L14p/L23e%3B E%3D2.6e-73 gene gene4433 http://www.ncbi.nlm.nih.gov/gene/?term=RB7850 RB7851 RB7851 rplX rplX 4198529 4198876 + 50S ribosomal protein L24 PMID: 4018095 best DB hits: BLAST: swissprot:Q9Z9K3%3B RL24_BACHD 50S RIBOSOMAL PROTEIN L24 -----%3B E%3D5e-15 swissprot:P04455%3B RL24_BACST 50S RIBOSOMAL PROTEIN L24 -----%3B E%3D4e-14 swissprot:P12876%3B RL24_BACSU 50S RIBOSOMAL PROTEIN L24 (BL23) (12%3B E%3D9e-14 COG: BH0145%3B COG0198 Ribosomal protein L24%3B E%3D5e-16 PFAM: PF00467%3B KOW motif%3B E%3D4.2e-18 gene gene4434 http://www.ncbi.nlm.nih.gov/gene/?term=RB7851 RB7852 RB7852 rplE rplE 4198935 4199525 + 50S ribosomal protein L5 part of 50S and 5S/L5/L18/L25 subcomplex%3B contacts 5S rRNA and P site tRNA%3B forms a bridge to the 30S subunit in the ribosome by binding to S13 gene gene4435 http://www.ncbi.nlm.nih.gov/gene/?term=RB7852 RB7854 RB7854 rpsN rpsN 4199624 4199809 + 30 S ribosomal protein S14 best DB hits: BLAST: swissprot:Q9Z9K1%3B RS14_BACHD 30S RIBOSOMAL PROTEIN S14 -----%3B E%3D2e-09 swissprot:P24320%3B RS14_THETH 30S RIBOSOMAL PROTEIN S14 -----%3B E%3D8e-10 pir:S15440%3B ribosomal protein S14 - Thermus aquaticus (strain%3B E%3D9e-10 COG: CPn0937%3B COG0199 Ribosomal protein S14%3B E%3D2e-06 PFAM: PF00253%3B Ribosomal protein S14p/S29e%3B E%3D2.1e-27 gene gene4436 http://www.ncbi.nlm.nih.gov/gene/?term=RB7854 RB7855 RB7855 rpsH rpsH 4199839 4200240 + 30S ribosomal protein S8 PMID: 6806564 best DB hits: BLAST: swissprot:Q9Z9K0%3B RS8_BACHD 30S RIBOSOMAL PROTEIN S8 -----%3B E%3D2e-31 swissprot:P12879%3B RS8_BACSU 30S RIBOSOMAL PROTEIN S8 (BS8) -----%3B E%3D1e-30 pir:G69699%3B ribosomal protein S8 - Bacillus subtilis ----- ddbj:%3B E%3D4e-30 COG: BH0148%3B COG0096 Ribosomal protein S8%3B E%3D2e-32 PFAM: PF00410%3B Ribosomal protein S8%3B E%3D1.9e-63 gene gene4437 http://www.ncbi.nlm.nih.gov/gene/?term=RB7855 RB7856 RB7856 rplF rplF 4200306 4200851 + 50S ribosomal protein L6 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein%3B RNA-binding appears to be in the C-terminal domain%3B mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain%3B it has been localized to a region between the base of the L7/L12 stalk and the central protuberance gene gene4438 http://www.ncbi.nlm.nih.gov/gene/?term=RB7856 RB7857 RB7857 rplR rplR 4200854 4201303 + 50S ribosomal protein L18 PMID: 3542562 best DB hits: BLAST: swissprot:Q9ZAE3%3B RL18_THEMA 50S RIBOSOMAL PROTEIN L18 -----%3B E%3D4e-21 embl:CAA79793.1%3B (Z21677) ribosomal protein L18 [Thermotoga%3B E%3D4e-20 swissprot:O24704%3B RL18_SYNP6 50S RIBOSOMAL PROTEIN L18 -----%3B E%3D1e-19 COG: TM1484%3B COG0256 Ribosomal protein L18%3B E%3D4e-22 PFAM: PF00861%3B Ribosomal L18p/L5e family%3B E%3D3.7e-41 gene gene4439 http://www.ncbi.nlm.nih.gov/gene/?term=RB7857 RB7859 RB7859 rpsE rpsE 4201351 4201884 + 30S ribosomal protein S5 PMID: 6806564 PMID: 6363400 best DB hits: BLAST: swissprot:P21467%3B RS5_BACSU 30S RIBOSOMAL PROTEIN S5 (BS5) -----%3B E%3D1e-31 swissprot:Q9Z9J7%3B RS5_BACHD 30S RIBOSOMAL PROTEIN S5 -----%3B E%3D1e-31 pir:A81233%3B 30s ribosomal protein S5 NMB0159 [imported] - Neisseria%3B E%3D3e-31 COG: BS_rpsE%3B COG0098 Ribosomal protein S5%3B E%3D9e-33 PFAM: PF00333%3B Ribosomal protein S5%3B E%3D1.7e-62 gene gene4440 http://www.ncbi.nlm.nih.gov/gene/?term=RB7859 RB7863 RB7863 rplO rplO 4202048 4202542 + 50S ribosomal protein L15 PMID: 4018095 best DB hits: BLAST: swissprot:O67561%3B RL15_AQUAE 50S RIBOSOMAL PROTEIN L15 -----%3B E%3D3e-27 swissprot:Q9X1J0%3B RL15_THEMA 50S RIBOSOMAL PROTEIN L15 -----%3B E%3D1e-25 swissprot:O83237%3B RL15_TREPA 50S RIBOSOMAL PROTEIN L15 -----%3B E%3D1e-23 COG: aq_1642%3B COG0200 Ribosomal protein L15%3B E%3D3e-28 PFAM: PF01305%3B Ribosomal protein L15 amino te%3B E%3D5.2e-35 PF00256%3B Ribosomal protein L15%3B E%3D1.8e-19 gene gene4441 http://www.ncbi.nlm.nih.gov/gene/?term=RB7863 RB7866 RB7866 secY secY 4202820 4204214 + preprotein translocase subunit SecY forms heterotrimeric complex in the membrane%3B in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG%3B the SecG subunit is not essential%3B in bacteria translocation is driven via the SecA ATPase gene gene4442 http://www.ncbi.nlm.nih.gov/gene/?term=RB7866 RB7867 RB7867 adk adk 4204183 4204806 + adenylate kinase PMID: 9300823 PMID: 1554691 PMID: 9715904 best DB hits: BLAST: swissprot:O24706%3B KAD_SYNP6 ADENYLATE KINASE (ATP-AMP%3B E%3D3e-26 swissprot:P43414%3B KAD_STRCO ADENYLATE KINASE (ATP-AMP%3B E%3D3e-26 swissprot:P27142%3B KAD_BACST ADENYLATE KINASE (ATP-AMP%3B E%3D8e-26 COG: Rv0733%3B COG0563 Adenylate kinase and related kinases%3B E%3D3e-26 PFAM: PF02223%3B Thymidylate kinase%3B E%3D0.27 PF01202%3B Shikimate kinase%3B E%3D0.041 PF01712%3B Deoxynucleoside kinase%3B E%3D0.27 gene gene4443 http://www.ncbi.nlm.nih.gov/gene/?term=RB7867 RB7868 RB7868 RB7868 4204869 4205570 - hypothetical protein PMID: 97061201 best DB hits: BLAST: pir:S75290%3B hypothetical protein sll1289 - Synechocystis sp. (strain%3B E%3D3e-20 pir:G70687%3B hypothetical protein Rv1732c - Mycobacterium%3B E%3D1e-17 gb:AAF87891.1%3B AC015447_1 (AC015447) Hypothetical protein%3B E%3D1e-15 COG: sll1289%3B COG0526 Thiol-disulfide isomerase and thioredoxins%3B E%3D3e-21 gene gene4444 http://www.ncbi.nlm.nih.gov/gene/?term=RB7868 RB7869 RB7869 RB7869 4205582 4206676 - GDSL lipase PMID: 8098033 best DB hits: BLAST: pir:D81057%3B GDSL lipase NMB1674 [imported] -%3B E%3D4e-13 gb:AAG54851.1%3B AE005230_11 (AE005230) acyl-CoA thioesterase I%3B E%3D9e-11 swissprot:P29679%3B TESA_ECOLI ACYL-COA THIOESTERASE I PRECURSOR%3B E%3D2e-10 COG: NMB1674%3B COG2755 Lysophospholipase L1 and related esterases%3B E%3D3e-14 PFAM: PF00657%3B Lipase/Acylhydrolase with GDSL-li%3B E%3D0.59 gene gene4445 http://www.ncbi.nlm.nih.gov/gene/?term=RB7869 RB787 RB787 RB787 421117 422328 - transposase PMID: 11325940 best DB hits: BLAST: ddbj:BAA89624.1%3B (AB036665) similar to transposase of Tn5%3B E%3D0.043 embl:CAA23888.1%3B (V00615) open reading frame [Escherichia coli]%3B E%3D0.17 embl:CAA23891.1%3B (V00617) open reading frame [Escherichia coli]%3B E%3D0.17 PFAM: PF01609%3B Transposase (IS4 family)%3B E%3D0.079 gene gene418 http://www.ncbi.nlm.nih.gov/gene/?term=RB787 RB7871 RB7871 RB7871 4206608 4208176 + signal peptide PMID: 12004073 gene gene4446 http://www.ncbi.nlm.nih.gov/gene/?term=RB7871 RB7875 RB7875 arsA arsA 4208176 4209654 + arylsulfatase PMID: 7910580 PMID: 1572648 best DB hits: BLAST: gb:AAB03341.1%3B (U62317) arylsulfatase A [Homo sapiens]%3B E%3D4e-58 embl:CAA36398.1%3B (X52150) arylsulphatase a [Homo sapiens]%3B E%3D4e-58 pdb:1E2S%3B P Chain P%2C Crystal Structure Of An Arylsulfatase A%3B E%3D4e-57 COG: PA0183%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D5e-25 PFAM: PF00884%3B Sulfatase%3B E%3D3.3e-84 gene gene4447 http://www.ncbi.nlm.nih.gov/gene/?term=RB7875 RB7879 RB7879 GALNS GALNS 4209807 4211261 + N-acetylgalactosamine-6-sulfatase PMID: 20164110 best DB hits: BLAST: gb:AAF63858.1%3B (AF112242) N-acetylgalactosamine-6-sulfate%3B E%3D2e-35 ddbj:BAA04535.1%3B (D17629) N-acetylgalactosamine 6-sulfate%3B E%3D6e-35 gb:AAF30402.1%3B AF109924_1 (AF109924) sulfatase 1 precursor [Helix%3B E%3D2e-30 COG: ydeN%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D2e-26 PA0924%3B COG3083 Predicted hydrolase of alkaline phosphatase%3B E%3D0.002 PFAM: PF00884%3B Sulfatase%3B E%3D3.3e-51 gene gene4448 http://www.ncbi.nlm.nih.gov/gene/?term=RB7879 RB7881 RB7881 RB7881 4211388 4211615 - hypothetical protein gene gene4449 http://www.ncbi.nlm.nih.gov/gene/?term=RB7881 RB7883 RB7883 mutL mutL 4211572 4213689 + DNA mismatch repair protein PMID: 8760914 best DB hits: BLAST: pir:C81860%3B DNA mismatch repair protein NMA1655 [imported] -%3B E%3D8e-97 pir:B81084%3B mismatch repair protein MutL NMB1442 [imported] -%3B E%3D6e-95 ddbj:BAB06087.1%3B (AP001515) DNA mismatch repair protein [Bacillus%3B E%3D1e-85 COG: NMB1442%3B COG0323 DNA mismatch repair enzyme (predicted ATPase)%3B E%3D6e-96 PFAM: PF02518%3B Histidine kinase-%2C DNA gyrase%3B E%3D0.00053 PF01119%3B DNA mismatch repair protein%3B E%3D8.5e-57 gene gene4450 http://www.ncbi.nlm.nih.gov/gene/?term=RB7883 RB7885 RB7885 pdxA pdxA 4213686 4214741 + pyridoxal phosphate biosynthetic protein PdxA PMID: 2670894 best DB hits: BLAST: pir:H70373%3B pyridoxal phosphate biosynthetic protein PdxA - Aquifex%3B E%3D3e-45 pir:S77070%3B pyridoxal phosphate biosynthetic protein pdxA -%3B E%3D1e-44 pir:A83572%3B pyridoxal phosphate biosynthetic protein PdxA PA0593%3B E%3D2e-43 COG: aq_852%3B COG1995 Pyridoxin biosynthesis protein of unknown function%3B E%3D3e-46 gene gene4451 http://www.ncbi.nlm.nih.gov/gene/?term=RB7885 RB7886 RB7886 RB7886 4214726 4216519 + hypothetical protein gene gene4452 http://www.ncbi.nlm.nih.gov/gene/?term=RB7886 RB7894 RB7894 tufA tufA 4217484 4218680 + elongation factor Tu EF-Tu%3B promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis%3B when the tRNA anticodon matches the mRNA codon%2C GTP hydrolysis results%3B the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts%3B many prokaryotes have two copies of the gene encoding EF-Tu gene gene4457 http://www.ncbi.nlm.nih.gov/gene/?term=RB7894 RB7897 RB7897 secE secE 4218945 4219403 + SecE protein best DB hits: PFAM: PF00584%3B SecE/Sec61-gamma subunits of protein%3B E%3D2.2e-07 gene gene4459 http://www.ncbi.nlm.nih.gov/gene/?term=RB7897 RB7898 RB7898 nusG nusG 4219400 4220077 + transcription antiterminator NusG PMID: 2137819 PMID: 1532577 PMID: 7505669 PMID: 8422985 best DB hits: BLAST: gb:AAK03828.1%3B (AE006211) NusG [Pasteurella multocida]%3B E%3D3e-27 pir:A82338%3B transcription antitermination protein NusG VC0323%3B E%3D6e-26 gb:AAF33495.1%3B (AF170176) 99%25 identity over 181 amino acids with%3B E%3D8e-25 COG: VC0323%3B COG0250 Transcription antiterminator%3B E%3D6e-27 PFAM: PF02357%3B Transcription termination facto%3B E%3D2.9e-10 PF00467%3B KOW motif%3B E%3D0.37 gene gene4460 http://www.ncbi.nlm.nih.gov/gene/?term=RB7898 RB7899 RB7899 rplK rplK 4220226 4220651 + 50S ribosomal protein L11 PMID: 8181706 PMID: 7715599 PMID: 9731302 best DB hits: BLAST: ddbj:BAB03838.1%3B (AP001507) 50S ribosomal protein L11 [Bacillus%3B E%3D5e-37 swissprot:P36254%3B RL11_STACA 50S RIBOSOMAL PROTEIN L11 -----%3B E%3D1e-36 swissprot:O06443%3B RL11_STAAU 50S RIBOSOMAL PROTEIN L11 -----%3B E%3D1e-36 COG: BH0119%3B COG0080 Ribosomal protein L11%3B E%3D5e-38 PFAM: PF00298%3B Ribosomal protein L11%3B E%3D1.4e-62 gene gene4461 http://www.ncbi.nlm.nih.gov/gene/?term=RB7899 RB790 RB790 RB790 422341 422529 - hypothetical protein gene gene419 http://www.ncbi.nlm.nih.gov/gene/?term=RB790 RB7900 RB7900 msrB msrB 4220692 4221276 - peptide methionine sulfoxide reductase PMID: 97426617 PMID: 9278503 best DB hits: BLAST: swissprot:P39903%3B YEAA_ECOLI HYPOTHETICAL 15.5 KDA PROTEIN IN%3B E%3D5e-32 gb:AAG51964.1%3B AC024260_2 (AC024260) transcriptional regulator%2C%3B E%3D3e-31 ddbj:BAA15575.1%3B (D90821) F44E2.6 protein [Escherichia coli]%3B E%3D4e-30 COG: yeaA%3B COG0229 Conserved domain frequently associated with peptide%3B E%3D5e-33 HI1455_2%3B COG0229 Conserved domain frequently associated with%3B E%3D3e-29 BS_yppQ%3B COG0229 Conserved domain frequently associated with peptide%3B E%3D2e-28 PFAM: PF01641%3B Domain of unknown function DUF25%3B E%3D4.7e-66 gene gene4462 http://www.ncbi.nlm.nih.gov/gene/?term=RB7900 RB7901 RB7901 RB7901 4221293 4221613 - hypothetical protein gene gene4463 http://www.ncbi.nlm.nih.gov/gene/?term=RB7901 RB7902 RB7902 RB7902 4221555 4221755 + hypothetical protein gene gene4464 http://www.ncbi.nlm.nih.gov/gene/?term=RB7902 RB7903 RB7903 RB7903 4221689 4222915 + ABC transporter PMID: 97221617 best DB hits: BLAST: gb:AAK03847.1%3B (AE006213) unknown [Pasteurella multocida]%3B E%3D2e-43 pir:E70943%3B probable ABC-type sugar transport protein -%3B E%3D1e-42 embl:CAB77334.1%3B (AL160331) ABC transporter ATP-binding protein%3B E%3D1e-42 COG: Rv2038c%3B COG1130 ABC-type sugar/spermidine/putrescine transport%3B E%3D9e-44 PA0280%3B COG1118 ABC-type sulfate/molybdate transport systems%2C ATPase%3B E%3D5e-41 BH1140%3B COG1130 ABC-type sugar/spermidine/putrescine transport%3B E%3D5e-41 PFAM: PF00071%3B Ras family%3B E%3D0.056 PF00005%3B ABC transporter%3B E%3D8.4e-47 gene gene4465 http://www.ncbi.nlm.nih.gov/gene/?term=RB7903 RB7906 RB7906 RB7906 4222930 4223628 + hypothetical protein best DB hits: BLAST: pir:B82738%3B conserved hypothetical protein XF0979 [imported] -%3B E%3D2e-14 pir:G81234%3B conserved hypothetical protein NMB0122 [imported] -%3B E%3D3e-14 pir:A82360%3B conserved hypothetical protein VC0146 [imported] -%3B E%3D9e-14 COG: XF0979%3B COG0742 N6-adenine-specific methylase%3B E%3D2e-15 PAB1237%3B COG1092 Predicted SAM-dependent methyltransferases%3B E%3D7e-04 RP545%3B COG0742 N6-adenine-specific methylase%3B E%3D0.006 gene gene4466 http://www.ncbi.nlm.nih.gov/gene/?term=RB7906 RB7907 RB7907 RB7907 4223603 4224445 - lipase PMID: 8445654 best DB hits: BLAST: pir:C75472%3B probable lipase - Deinococcus radiodurans (strain R1)%3B E%3D2e-17 pir:E70914%3B probable lipO protein - Mycobacterium tuberculosis%3B E%3D3e-07 pir:H70731%3B probable esterase - Mycobacterium tuberculosis (strain%3B E%3D4e-07 COG: DR0821_2%3B COG0657 Acetyl esterase%3B E%3D2e-17 DR0415%3B COG2272 Carboxylesterase type B%3B E%3D0.002 VCA0490%3B COG0657 Acetyl esterase%3B E%3D0.005 PFAM: PF00326%3B Prolyl oligopeptidase%3B E%3D0.00023 PF00135%3B Carboxylesterase%3B E%3D2.4e-05 gene gene4467 http://www.ncbi.nlm.nih.gov/gene/?term=RB7907 RB7909 RB7909 RB7909 4224502 4225494 - signal peptide gene gene4468 http://www.ncbi.nlm.nih.gov/gene/?term=RB7909 RB791 RB791 RB791 422526 422726 - hypothetical protein gene gene420 http://www.ncbi.nlm.nih.gov/gene/?term=RB791 RB7911 RB7911 RB7911 4225623 4226849 - secreted proteinase best DB hits: BLAST: pir:T35287%3B probable secreted proteinase - Streptomyces coelicolor%3B E%3D3e-10 gb:AAK02818.1%3B (AE006110) HtrA [Pasteurella multocida]%3B E%3D2e-08 pir:S47170%3B hypothetical protein 34K - Mycobacterium%3B E%3D3e-08 COG: VNG0226G%3B COG0265 Trypsin-like serine proteases%2C typically%3B E%3D9e-09 htrA%3B COG0265 Trypsin-like serine proteases%2C typically periplasmic%2C%3B E%3D2e-08 aq_1450%3B COG0265 Trypsin-like serine proteases%2C typically%3B E%3D5e-08 PFAM: PF00089%3B Trypsin%3B E%3D0.038 gene gene4469 http://www.ncbi.nlm.nih.gov/gene/?term=RB7911 RB7912 RB7912 RB7912 4226932 4227861 - signal peptide best DB hits: PFAM: PF02236%3B Viral DNA-binding protein%3B E%3D0.73 gene gene4470 http://www.ncbi.nlm.nih.gov/gene/?term=RB7912 RB7913 RB7913 RB7913 4227877 4228083 - hypothetical protein gene gene4472 http://www.ncbi.nlm.nih.gov/gene/?term=RB7913 RB7914 RB7914 RB7914 4227877 4228476 - signal peptide gene gene4471 http://www.ncbi.nlm.nih.gov/gene/?term=RB7914 RB7915 RB7915 RB7915 4228108 4228539 + signal peptide gene gene4473 http://www.ncbi.nlm.nih.gov/gene/?term=RB7915 RB7916 RB7916 RB7916 4228608 4229396 + hypothetical protein gene gene4474 http://www.ncbi.nlm.nih.gov/gene/?term=RB7916 RB7919 RB7919 ppkA ppkA 4229437 4231818 - serine/threonine protein kinase PpkA PMID: 7883195 best DB hits: BLAST: gb:AAD03499.2%3B (AF035395) serinethreonine protein kinase PpkA%3B E%3D6e-16 pir:D83637%3B serinethreonine protein kinase PpkA PA0074 [imported] -%3B E%3D1e-15 pir:T36502%3B serinethreonine protein kinase - Streptomyces%3B E%3D2e-11 COG: PA0074%3B COG0515 Serine/threonine protein kinases%3B E%3D1e-16 PFAM: PF00069%3B Protein kinase domain%3B E%3D1e-08 gene gene4475 http://www.ncbi.nlm.nih.gov/gene/?term=RB7919 RB792 RB792 RB792 422908 424260 + Na+/H+ antiporter PMID: 9537504 best DB hits: BLAST: pir:H83377%3B probable transporter PA2135 [imported] - Pseudomonas%3B E%3D2e-35 ddbj:BAB07757.1%3B (AP001520) Na+H+ antiporter [Bacillus%3B E%3D0.002 gb:AAF72041.1%3B AF128238_1 (AF128238) Na+H+ antiporter Cnh1%3B E%3D0.003 COG: PA2135%3B COG0025 NhaP-type Na+/H+ and K+/H+ antiporters%3B E%3D1e-36 PFAM: PF00999%3B Sodium/hydrogen exchanger fami%3B E%3D1.3e-14 gene gene421 http://www.ncbi.nlm.nih.gov/gene/?term=RB792 RB7924 RB7924 sig sig 4231813 4232499 + ECF sigma factor AdsA PMID: 20372644 best DB hits: BLAST: ddbj:BAB08177.1%3B (AB039273) ECF sigma factor AdsA [Streptomyces%3B E%3D2e-05 pir:T36271%3B probable RNA polymerase sigma factor - Streptomyces%3B E%3D2e-04 embl:CAB55345.1%3B (AJ010584) ECF sigma factor [Streptomyces%3B E%3D2e-04 COG: Rv3414c%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D3e-05 TM0902%3B COG1191 DNA-directed RNA polymerase specialized sigma%3B E%3D3e-04 BS_sigH%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D0.008 PFAM: PF00140%3B Sigma-70 factor%3B E%3D3.2e-05 gene gene4476 http://www.ncbi.nlm.nih.gov/gene/?term=RB7924 RB7926 RB7926 RB7926 4232595 4233323 + hypothetical protein best DB hits: PFAM: PF00009%3B Elongation factor Tu family%3B E%3D0.29 gene gene4477 http://www.ncbi.nlm.nih.gov/gene/?term=RB7926 RB7928 RB7928 pknB pknB 4233448 4236582 + serine/threonine protein kinase PMID: 99426839 best DB hits: BLAST: embl:CAA10713.1%3B (AJ132604) hypothetical protein [Lactococcus%3B E%3D1e-38 gb:AAK05985.1%3B AE006418_5 (AE006418) serinethreonine protein%3B E%3D8e-38 gb:AAD42851.1%3B AF159689_3 (AF159689) serinethreonine kinase PKN3%3B E%3D2e-37 COG: BS_yloP_1%3B COG0515 Serine/threonine protein kinases%3B E%3D3e-38 PFAM: PF01610%3B Transposase%3B E%3D0.64 PF00069%3B Protein kinase domain%3B E%3D7.4e-61 gene gene4478 http://www.ncbi.nlm.nih.gov/gene/?term=RB7928 RB7929 RB7929 RB7929 4236583 4236810 + hypothetical protein gene gene4479 http://www.ncbi.nlm.nih.gov/gene/?term=RB7929 RB7931 RB7931 RB7931 4236807 4237280 + hypothetical protein gene gene4480 http://www.ncbi.nlm.nih.gov/gene/?term=RB7931 RB7935 RB7935 RB7935 4237340 4237720 - signal peptide gene gene4481 http://www.ncbi.nlm.nih.gov/gene/?term=RB7935 RB7937 RB7937 RB7937 4237684 4237809 - hypothetical protein gene gene4482 http://www.ncbi.nlm.nih.gov/gene/?term=RB7937 RB7938 RB7938 RB7938 4237919 4238386 - hypothetical protein gene gene4483 http://www.ncbi.nlm.nih.gov/gene/?term=RB7938 RB7939 RB7939 RB7939 4238296 4238613 + hypothetical protein gene gene4484 http://www.ncbi.nlm.nih.gov/gene/?term=RB7939 RB794 RB794 RB794 424501 424962 + hypothetical protein best DB hits: PFAM: PF00459%3B Inositol monophosphatase%3B E%3D0.67 gene gene422 http://www.ncbi.nlm.nih.gov/gene/?term=RB794 RB7940 RB7940 dcp dcp 4238703 4240943 - peptidyl-dipeptidase DCP PMID: 1537804 best DB hits: BLAST: swissprot:P27236%3B DCP_SALTY PEPTIDYL-DIPEPTIDASE DCP (DIPEPTIDYL%3B E%3D1e-109 pir:E82620%3B peptidyl-dipeptidase XF1944 [imported] - Xylella%3B E%3D1e-107 gb:AAG56224.1%3B AE005351_3 (AE005351) dipeptidyl carboxypeptidase%3B E%3D1e-106 COG: XF1944%3B COG0339 Zn-dependent oligopeptidases%3B E%3D1e-108 PFAM: PF01432%3B Peptidase M3%3B E%3D1.9e-122 gene gene4485 http://www.ncbi.nlm.nih.gov/gene/?term=RB7940 RB7941 RB7941 cysN cysN 4240892 4242835 - adenylyl-sulfate kinase in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa%3B catalyzes formation of activated sulfate intermediate%3B converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate%3B the activated intermediate is transferred to the nodulation factors by NodH%3B may interact with NodP and NodQ%3B similar to the CysD and CysN proteins from EScherichia coli involved in cysteine biosynthesis gene gene4486 http://www.ncbi.nlm.nih.gov/gene/?term=RB7941 RB7943 RB7943 cysD cysD 4242979 4243890 - sulfate adenylyltransferase subunit 2 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP gene gene4487 http://www.ncbi.nlm.nih.gov/gene/?term=RB7943 RB7945 RB7945 gidB gidB 4243996 4244691 - glucose inhibited division protein B (GidB) PMID: 98295987 PMID: 9634230 best DB hits: BLAST: swissprot:O53597%3B GIDB_MYCTU GLUCOSE INHIBITED DIVISION PROTEIN B%3B E%3D2e-15 swissprot:Q50203%3B GIDB_MYCLE GLUCOSE INHIBITED DIVISION PROTEIN B%3B E%3D9e-15 pir:C82950%3B glucose inhibited division protein B PA5564 [imported] -%3B E%3D1e-14 COG: Rv3919c%3B COG0357 Predicted S-adenosylmethionine-dependent%3B E%3D2e-16 PFAM: PF02527%3B Glucose inhibited division protein%3B E%3D1.5e-26 gene gene4488 http://www.ncbi.nlm.nih.gov/gene/?term=RB7945 RB7947 RB7947 RB7947 4244889 4246172 - O-linked GlcNAc transferase PMID: 9083067 PMID: 97238870 best DB hits: BLAST: gb:AAF26789.1%3B AC016829_13 (AC016829) O-linked GlcNAc%3B E%3D2e-09 gb:AAA62535.1%3B (U21320) contains TPR domain-like repeats%3B E%3D2e-08 gb:AAB63465.1%3B (U77412) O-linked GlcNAc transferase%3B E%3D2e-08 COG: sll0886%3B COG0457 TPR-repeat-containing proteins%3B E%3D2e-07 PFAM: PF00515%3B TPR Domain%3B E%3D0.025 gene gene4489 http://www.ncbi.nlm.nih.gov/gene/?term=RB7947 RB795 RB795 RB795 424970 425245 + hypothetical protein gene gene423 http://www.ncbi.nlm.nih.gov/gene/?term=RB795 RB7950 RB7950 RB7950 4246162 4246314 + hypothetical protein best DB hits: PFAM: PF02522%3B Aminoglycoside 3-N-acetyltrans%3B E%3D0.66 gene gene4490 http://www.ncbi.nlm.nih.gov/gene/?term=RB7950 RB7951 RB7951 RB7951 4246311 4246565 + hypothetical protein gene gene4491 http://www.ncbi.nlm.nih.gov/gene/?term=RB7951 RB7955 RB7955 RB7955 4246743 4247114 - hypothetical protein gene gene4492 http://www.ncbi.nlm.nih.gov/gene/?term=RB7955 RB7957 RB7957 topA topA 4247111 4249921 - DNA topoisomerase I PMID: 8921893 best DB hits: BLAST: swissprot:Q9X909%3B TOP1_STRCO DNA TOPOISOMERASE I (OMEGA-PROTEIN)%3B E%3D0.0 pir:G75403%3B DNA topoisomerase I - Deinococcus radiodurans (strain%3B E%3D0.0 swissprot:Q59567%3B TOP1_MYCTU DNA TOPOISOMERASE I (OMEGA-PROTEIN)%3B E%3D0.0 COG: DR1374_1%3B COG0550 Topoisomerase IA%3B E%3D1e-170 PFAM: PF01751%3B Toprim domain%3B E%3D3.1e-39 PF01131%3B DNA topoisomerase%3B E%3D4e-164 gene gene4493 http://www.ncbi.nlm.nih.gov/gene/?term=RB7957 RB7959 RB7959 uvrA uvrA 4249943 4256578 - exinuclease ABC subunit A PMID: 8675016 best DB hits: BLAST: swissprot:P94972%3B UVRA_MYCTU EXCINUCLEASE ABC SUBUNIT A -----%3B E%3D0.0 swissprot:Q56242%3B UVRA_THETH EXCINUCLEASE ABC SUBUNIT A -----%3B E%3D0.0 swissprot:Q9Z507%3B UVRA_STRCO EXCINUCLEASE ABC SUBUNIT A -----%3B E%3D0.0 COG: Rv1638%3B COG0178 Excinuclease ATPase subunit%3B E%3D0.0 PFAM: PF00005%3B ABC transporter%3B E%3D0.033 PF01583%3B Adenylylsulfate kinase%3B E%3D0.026 PF00005%3B ABC transporter%3B E%3D5e-12 gene gene4494 http://www.ncbi.nlm.nih.gov/gene/?term=RB7959 RB796 RB796 RB796 425294 425506 - hypothetical protein gene gene424 http://www.ncbi.nlm.nih.gov/gene/?term=RB796 RB7960 RB7960 yacI yacI 4256632 4257723 - ATP:guanido phosphotransferase PMID: 7819288 PMID: 9671698 best DB hits: BLAST: ddbj:BAB03821.1%3B (AP001507) creatine kinase [Bacillus halodurans]%3B E%3D1e-66 swissprot:P37570%3B YACI_BACSU HYPOTHETICAL 41.1 KD PROTEIN IN%3B E%3D2e-65 gb:AAC44445.1%3B (U40604) ORF3%3B 39 kDa protein [Listeria%3B E%3D8e-56 PFAM: PF00217%3B ATP:guanido phosphotransferase%3B E%3D0.0053 gene gene4495 http://www.ncbi.nlm.nih.gov/gene/?term=RB7960 RB7962 RB7962 yacH yacH 4257720 4258241 - hypothetical protein best DB hits: BLAST: ddbj:BAA90847.1%3B (AB031211) YacH [Bacillus halodurans] -----%3B E%3D2e-08 swissprot:P37569%3B YACH_BACSU HYPOTHETICAL 21.0 KD PROTEIN IN%3B E%3D5e-08 gb:AAC44444.1%3B (U40604) ORF2%3B 19 kDa protein [Listeria%3B E%3D2e-05 PFAM: PF02151%3B UvrB/uvrC motif%3B E%3D4.7e-08 gene gene4496 http://www.ncbi.nlm.nih.gov/gene/?term=RB7962 RB7965 RB7965 RB7965 4258303 4258464 + hypothetical protein gene gene4497 http://www.ncbi.nlm.nih.gov/gene/?term=RB7965 RB7967 RB7967 trpE trpE 4258474 4260117 + anthranilate synthase component I PMID: 2732211 best DB hits: BLAST: swissprot:P14953%3B TRPE_CLOTM ANTHRANILATE SYNTHASE COMPONENT I%3B E%3D1e-112 swissprot:P21689%3B TRPE_PSESS ANTHRANILATE SYNTHASE COMPONENT I%3B E%3D1e-104 pir:A39128%3B anthranilate synthase (EC 4.1.3.27) component I%3B E%3D1e-104 COG: PA0609%3B COG0147 Anthranilate/para-aminobenzoate synthases component%3B E%3D1e-103 VNG0384G%3B COG0147 Anthranilate/para-aminobenzoate synthases%3B E%3D2e-66 VC1174%3B COG0147 Anthranilate/para-aminobenzoate synthases component%3B E%3D1e-64 PFAM: PF00425%3B chorismate binding enzyme%3B E%3D2e-166 gene gene4498 http://www.ncbi.nlm.nih.gov/gene/?term=RB7967 RB7970 RB7970 RB7970 4260248 4260739 + hypothetical protein best DB hits: BLAST: pir:F64973%3B hypothetical protein b2071 - Escherichia coli (strain%3B E%3D1e-08 pir:D81118%3B conserved hypothetical protein ankyrin-related protein%3B E%3D8e-08 pir:C81903%3B hypothetical protein NMA1343 [imported] - Neisseria%3B E%3D1e-04 gene gene4499 http://www.ncbi.nlm.nih.gov/gene/?term=RB7970 RB7973 RB7973 cycA cycA 4261285 4265451 - cytochrome c precursor PMID: 97428333 PMID: 2986626 PMID: 9281430 PMID: 11152119 best DB hits: BLAST: pir:A83363%3B probable cytochrome c precursor PA2266 [imported] -%3B E%3D5e-09 pir:E83075%3B probable cytochrome c PA4571 [imported] - Pseudomonas%3B E%3D7e-07 pir:CCTW5T%3B cytochrome c552 [validated] - Thermus aquaticus%3B E%3D9e-07 COG: PA2266%3B COG2010 Cytochrome c%2C mono- and diheme variants%3B E%3D5e-10 PFAM: PF00034%3B Cytochrome c%3B E%3D0.042 gene gene4500 http://www.ncbi.nlm.nih.gov/gene/?term=RB7973 RB7978 RB7978 RB7978 4265473 4265817 + hypothetical protein gene gene4501 http://www.ncbi.nlm.nih.gov/gene/?term=RB7978 RB7980 RB7980 RB7980 4265869 4266462 + hypothetical protein gene gene4502 http://www.ncbi.nlm.nih.gov/gene/?term=RB7980 RB7983 RB7983 RB7983 4266520 4267023 - hypothetical protein gene gene4503 http://www.ncbi.nlm.nih.gov/gene/?term=RB7983 RB7984 RB7984 RB7984 4267183 4267290 + hypothetical protein gene gene4504 http://www.ncbi.nlm.nih.gov/gene/?term=RB7984 RB7985 RB7985 ansA ansA 4267280 4268695 + L-asparaginase PMID: 1391778 best DB hits: BLAST: swissprot:P30364%3B ASPG_LUPAN L-ASPARAGINASE (L-ASPARAGINE%3B E%3D3e-62 swissprot:Q9ZSD6%3B ASPG_LUPLU L-ASPARAGINASE (L-ASPARAGINE%3B E%3D3e-62 swissprot:P50288%3B ASPG_LUPAL L-ASPARAGINASE (L-ASPARAGINE%3B E%3D5e-62 COG: ybiK%3B COG1446 Asparaginase%3B E%3D2e-56 PFAM: PF02530%3B Porin subfamily%3B E%3D0.047 PF01112%3B Asparaginase%3B E%3D1.9e-57 gene gene4505 http://www.ncbi.nlm.nih.gov/gene/?term=RB7985 RB7987 RB7987 RB7987 4268647 4269756 + hypothetical protein gene gene4506 http://www.ncbi.nlm.nih.gov/gene/?term=RB7987 RB7989 RB7989 RB7989 4269708 4271909 + hypothetical protein gene gene4507 http://www.ncbi.nlm.nih.gov/gene/?term=RB7989 RB7991 RB7991 RB7991 4271954 4273435 + signal peptide PMID: 11743194 gene gene4508 http://www.ncbi.nlm.nih.gov/gene/?term=RB7991 RB7995 RB7995 arsA arsA 4273470 4275440 - arylsulfatase PMID: 20164110 PMID: 7910580 PMID: 1572648 best DB hits: BLAST: pir:E64903%3B arylsulfatase homolog b1498 - Escherichia coli -----%3B E%3D2e-39 swissprot:P77318%3B YDEN_ECOLI SULFATASE YDEN PRECURSOR%3B E%3D2e-39 gb:AAG56270.1%3B AE005355_4 (AE005355) sulfatase%3B E%3D2e-39 COG: ydeN%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D2e-40 PFAM: PF00884%3B Sulfatase%3B E%3D1.1e-59 gene gene4509 http://www.ncbi.nlm.nih.gov/gene/?term=RB7995 RB7998 RB7998 RB7998 4275399 4276436 + hypothetical protein gene gene4510 http://www.ncbi.nlm.nih.gov/gene/?term=RB7998 RB7999 RB7999 RB7999 4276441 4277514 + hypothetical protein best DB hits: PFAM: PF00573%3B Ribosomal protein L4/L1 family%3B E%3D0.0042 gene gene4511 http://www.ncbi.nlm.nih.gov/gene/?term=RB7999 RB8 RB8 RB8 1733 5263 - helicase best DB hits: BLAST: pir:D83545%3B probable helicase PA0799 [imported] - Pseudomonas%3B E%3D7e-95 embl:CAA67095.1%3B (X98455) SNF [Bacillus cereus]%3B E%3D8e-94 pir:C72027%3B swisnf family helicase_2 - Chlamydophila pneumoniae%3B E%3D4e-87 COG: PA0799%3B COG0553 Superfamily II DNA/RNA helicases%2C SNF2 family%3B E%3D7e-96 PFAM: PF02803%3B Thiolase%2C C-terminal domain%3B E%3D0.11 PF00176%3B SNF2 and others N-terminal domain%3B E%3D3.9e-64 PF00271%3B Helicase conserved C-terminal doma%3B E%3D1.2e-24 gene gene4 http://www.ncbi.nlm.nih.gov/gene/?term=RB8 RB80 RB80 RB80 29767 30276 + hypothetical protein gene gene44 http://www.ncbi.nlm.nih.gov/gene/?term=RB80 RB800 RB800 RB800 426227 426385 - signal peptide gene gene428 http://www.ncbi.nlm.nih.gov/gene/?term=RB800 RB8001 RB8001 RB8001 4276849 4277541 - signal peptide gene gene4512 http://www.ncbi.nlm.nih.gov/gene/?term=RB8001 RB8002 RB8002 GALNS GALNS 4277579 4279036 + N-acetylgalactosamine 6-sulfate sulfatase (GALNS) PMID: 8020961 PMID: 1755850 PMID: 8001980 PMID: 1522213 best DB hits: BLAST: gb:AAF49287.1%3B (AE003522) CG7402 gene product [Drosophila%3B E%3D2e-38 gb:AAF49302.1%3B (AE003522) CG5584 gene product [Drosophila%3B E%3D2e-37 ddbj:BAA04535.1%3B (D17629) N-acetylgalactosamine 6-sulfate%3B E%3D2e-35 COG: PA0183%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D2e-31 PFAM: PF00884%3B Sulfatase%3B E%3D2.4e-44 gene gene4513 http://www.ncbi.nlm.nih.gov/gene/?term=RB8002 RB8008 RB8008 RB8008 4279356 4280558 + general secretion pathway protein G PMID: hofG PMID: hopG best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene4514 http://www.ncbi.nlm.nih.gov/gene/?term=RB8008 RB8010 RB8010 RB8010 4280574 4280861 + signal peptide gene gene4515 http://www.ncbi.nlm.nih.gov/gene/?term=RB8010 RB8011 RB8011 RB8011 4281114 4282298 - hypothetical protein gene gene4516 http://www.ncbi.nlm.nih.gov/gene/?term=RB8011 RB8012 RB8012 RB8012 4282280 4282669 - hypothetical protein gene gene4517 http://www.ncbi.nlm.nih.gov/gene/?term=RB8012 RB8014 RB8014 RB8014 4282620 4282802 - hypothetical protein gene gene4518 http://www.ncbi.nlm.nih.gov/gene/?term=RB8014 RB8016 RB8016 ncx ncx 4282805 4284103 + sodium/calcium exchanger antiporter PMID: 11294880 best DB hits: BLAST: gb:AAG12988.1%3B AF169257_1 (AF169257) sodiumcalcium exchanger%3B E%3D4e-08 ref:XP_009649.1%3B sodium calcium exchanger [Homo sapiens]%3B E%3D4e-08 gb:AAG60049.1%3B AF314821_1 (AF314821) K+-dependent NaCa exchanger%3B E%3D4e-08 COG: MTH1155%3B COG0530 Ca2+/Na+ antiporter%3B E%3D0.002 PFAM: PF01699%3B Sodium/calcium exchanger protei%3B E%3D4.9e-05 gene gene4519 http://www.ncbi.nlm.nih.gov/gene/?term=RB8016 RB8018 RB8018 RB8018 4284304 4286895 + hypothetical protein gene gene4520 http://www.ncbi.nlm.nih.gov/gene/?term=RB8018 RB8019 RB8019 RB8019 4284682 4285233 - polyketide synthase PMID: 98295987 best DB hits: BLAST: pir:A70985%3B probable polyketide synthase - Mycobacterium%3B E%3D0.69 gene gene4521 http://www.ncbi.nlm.nih.gov/gene/?term=RB8019 RB8022 RB8022 RB8022 4286892 4288223 + signal peptide gene gene4522 http://www.ncbi.nlm.nih.gov/gene/?term=RB8022 RB8026 RB8026 RB8026 4288220 4289278 + hypothetical protein best DB hits: BLAST: pir:E82768%3B conserved hypothetical protein XF0752 [imported] -%3B E%3D4e-30 pir:A82381%3B conserved hypothetical protein VCA1077 [imported] -%3B E%3D1e-26 gb:AAF47337.1%3B (AE003467) CG7049 gene product [Drosophila%3B E%3D5e-19 COG: XF0752_2%3B COG1262 Uncharacterized BCR%3B E%3D9e-30 gene gene4523 http://www.ncbi.nlm.nih.gov/gene/?term=RB8026 RB8027 RB8027 RB8027 4289305 4290003 + hypothetical protein gene gene4524 http://www.ncbi.nlm.nih.gov/gene/?term=RB8027 RB8028 RB8028 pknB pknB 4289867 4291702 + serine/threonine kinase Pkn10 PMID: 99426839 best DB hits: BLAST: gb:AAF80365.1%3B AF159160_1 (AF159160) serinethreonine kinase Pkn10%3B E%3D6e-50 swissprot:P54744%3B PKNB_MYCLE SERINETHREONINE-PROTEIN%3B E%3D3e-46 swissprot:P71584%3B PKNB_MYCTU SERINETHREONINE-PROTEIN%3B E%3D7e-44 COG: Rv0014c_1%3B COG0515 Serine/threonine protein kinases%3B E%3D7e-45 PFAM: PF00069%3B Protein kinase domain%3B E%3D1.6e-64 gene gene4525 http://www.ncbi.nlm.nih.gov/gene/?term=RB8028 RB8029 RB8029 fabG fabG 4291888 4292625 - 3-ketoacyl-ACP reductase catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis gene gene4526 http://www.ncbi.nlm.nih.gov/gene/?term=RB8029 RB803 RB803 RB803 426456 426674 + hypothetical protein gene gene430 http://www.ncbi.nlm.nih.gov/gene/?term=RB803 RB8030 RB8030 GALNS GALNS 4292674 4294116 + N-acetylgalactosamine 6-sulfate sulfatase (GALNS) PMID: 1755850 PMID: 8001980 PMID: 1522213 PMID: 7668283 PMID: 7795586 best DB hits: BLAST: ddbj:BAA04535.1%3B (D17629) N-acetylgalactosamine 6-sulfate%3B E%3D4e-24 gb:AAF63858.1%3B (AF112242) N-acetylgalactosamine-6-sulfate%3B E%3D4e-23 gb:AAF58475.1%3B (AE003821) CG8646 gene product [Drosophila%3B E%3D1e-22 COG: ydeN%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D1e-14 PFAM: PF00884%3B Sulfatase%3B E%3D9.4e-37 gene gene4527 http://www.ncbi.nlm.nih.gov/gene/?term=RB8030 RB8031 RB8031 ybhE ybhE 4294183 4295373 - 3-carboxymuconate cyclase best DB hits: BLAST: swissprot:O34499%3B YKGB_BACSU HYPOTHETICAL 38.4 KDA PROTEIN IN%3B E%3D1e-43 embl:CAB66198.1%3B (AL136502) hypothetical protein SCF43.09.%3B E%3D1e-31 embl:CAC13069.1%3B (AL445503) secreted protein%3B E%3D6e-31 COG: BS_ykgB%3B COG2706 3-carboxymuconate cyclase%3B E%3D1e-44 gene gene4528 http://www.ncbi.nlm.nih.gov/gene/?term=RB8031 RB8034 RB8034 RB8034 4295344 4295787 + hypothetical protein gene gene4529 http://www.ncbi.nlm.nih.gov/gene/?term=RB8034 RB8035 RB8035 trkA trkA 4295792 4297138 + potassium transporter peripheral membrane component involved in potassium uptake%3B found to be peripherally associated with the inner membrane in Escherichia coli%3B contains an NAD-binding domain gene gene4530 http://www.ncbi.nlm.nih.gov/gene/?term=RB8035 RB8037 RB8037 serB serB 4296997 4298454 + phosphoserine phosphatase PMID: 2997734 best DB hits: BLAST: pir:C83025%3B probable phosphoserine phosphatase PA4960 [imported] -%3B E%3D1e-108 pir:E70860%3B probable serB2 protein - Mycobacterium tuberculosis%3B E%3D1e-60 pir:T36772%3B probable phosphoserine phosphatase - Streptomyces%3B E%3D1e-57 COG: PA4960_2%3B COG0560 Phosphoserine phosphatase%3B E%3D5e-70 PA4960_1%3B COG2716 ACT domain-containing protein%3B E%3D3e-31 jhp0597%3B COG0560 Phosphoserine phosphatase%3B E%3D6e-26 PFAM: PF01842%3B ACT domain%3B E%3D0.052 PF00702%3B haloacid dehalogenase-like hy%3B E%3D3.6e-26 gene gene4531 http://www.ncbi.nlm.nih.gov/gene/?term=RB8037 RB8038 RB8038 OPLAH OPLAH 4298294 4302439 + 5-oxoprolinase PMID: 8943290 best DB hits: BLAST: pir:E70627%3B hypothetical protein Rv0266c - Mycobacterium tuberculosis%3B E%3D0.0 pir:S77037%3B hypothetical protein slr0697 - Synechocystis sp. (strain%3B E%3D0.0 swissprot:P97608%3B OPLA_RAT 5-OXOPROLINASE (5-OXO-L-PROLINASE)%3B E%3D1e-153 COG: Rv0266c_1%3B COG0145 N-methylhydaintoinase A%3B E%3D2e-99 slr0697_2%3B COG0146 N-methylhydaintoinase B%3B E%3D9e-85 YKL215c_1%3B COG0145 N-methylhydaintoinase A%3B E%3D6e-73 PFAM: PF01968%3B Hydantoinase/oxoprolinase%3B E%3D0.00018 PF02538%3B Hydantoinase B/oxoprolinase%3B E%3D1.7e-167 gene gene4532 http://www.ncbi.nlm.nih.gov/gene/?term=RB8038 RB8039 RB8039 RB8039 4302446 4307233 - oxidoreductase best DB hits: PFAM: PF01011%3B PQQ enzyme repeat%3B E%3D0.48 PF00515%3B TPR Domain%3B E%3D0.0026 PF01011%3B PQQ enzyme repeat%3B E%3D0.16 gene gene4533 http://www.ncbi.nlm.nih.gov/gene/?term=RB8039 RB8046 RB8046 devC devC 4307428 4308630 - exporter subunit devC- ABC transporter family protein PMID: 98230330 best DB hits: BLAST: embl:CAA67986.1%3B (X99672) devC [Anabaena sp.]%3B E%3D2e-57 embl:CAA05976.1%3B (AJ003195) membrane spanning subunit [Anabaena%3B E%3D7e-57 pir:S76812%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D4e-53 COG: Rv0072%3B COG0577 Predicted permease%3B E%3D0.008 PFAM: PF02687%3B Predicted permease%3B E%3D5.7e-12 gene gene4534 http://www.ncbi.nlm.nih.gov/gene/?term=RB8046 RB8049 RB8049 nrdR nrdR 4308630 4309100 - NrdR family transcriptional regulator PMID: 1406588 best DB hits: BLAST: pir:G82098%3B conserved hypothetical protein VC2272 [imported] -%3B E%3D4e-30 swissprot:P25538%3B YBAD_ECOLI HYPOTHETICAL 17.2 KD PROTEIN IN%3B E%3D2e-28 pir:E72221%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D4e-28 COG: VC2272%3B COG1327 Predicted transcriptional regulator%2C consists of a%3B E%3D4e-31 PFAM: PF02644%3B Uncharacterized BCR%2C COG1327%3B E%3D5.2e-62 gene gene4535 http://www.ncbi.nlm.nih.gov/gene/?term=RB8049 RB8050 RB8050 RB8050 4309175 4309393 - hypothetical protein gene gene4536 http://www.ncbi.nlm.nih.gov/gene/?term=RB8050 RB8052 RB8052 RB8052 4309427 4310107 + hypothetical protein PMID: 98295987 best DB hits: BLAST: pir:G70979%3B hypothetical protein Rv3278c - Mycobacterium%3B E%3D0.59 PFAM: PF01944%3B Integral membrane protein DUF95%3B E%3D0.0077 gene gene4537 http://www.ncbi.nlm.nih.gov/gene/?term=RB8052 RB8054 RB8054 RB8054 4310110 4310499 + hypothetical protein PMID: 2509712 best DB hits: BLAST: swissprot:P18746%3B ZO26_XENLA OOCYTE ZINC FINGER PROTEIN XLCOF26%3B E%3D0.84 gene gene4538 http://www.ncbi.nlm.nih.gov/gene/?term=RB8054 RB8055 RB8055 RB8055 4310613 4311851 - signal peptide gene gene4539 http://www.ncbi.nlm.nih.gov/gene/?term=RB8055 RB8056 RB8056 RB8056 4311931 4313712 - hypothetical protein gene gene4540 http://www.ncbi.nlm.nih.gov/gene/?term=RB8056 RB8059 RB8059 RB8059 4313654 4314058 + hypothetical protein gene gene4541 http://www.ncbi.nlm.nih.gov/gene/?term=RB8059 RB8060 RB8060 spoU spoU 4314080 4314925 - spoU rRNA methylase PMID: 7590303 PMID: 2987648 best DB hits: BLAST: gb:AAF73591.1%3B (AE002337) spoU rRNA methylase%3B E%3D2e-27 pir:C72066%3B rRNA methylase - Chlamydophila pneumoniae (strain%3B E%3D5e-27 pir:A75448%3B rRNA methylase - Deinococcus radiodurans (strain R1)%3B E%3D2e-26 COG: CPn0530%3B COG0566 rRNA methylases%3B E%3D5e-28 PFAM: PF00588%3B SpoU rRNA Methylase%3B E%3D4.7e-24 gene gene4542 http://www.ncbi.nlm.nih.gov/gene/?term=RB8060 RB8061 RB8061 RB8061 4314897 4316168 + hypothetical protein PMID: 97426617 best DB hits: BLAST: pir:C65084%3B hypothetical protein b2981 - Escherichia coli (strain%3B E%3D9e-35 gene gene4543 http://www.ncbi.nlm.nih.gov/gene/?term=RB8061 RB8062 RB8062 yoaA yoaA 4316165 4318267 + ATP-dependent helicase DinG PMID: 92332449 best DB hits: BLAST: pir:E82133%3B ATP-dependent helicase%2C DinG family VC1990 [imported] -%3B E%3D4e-87 swissprot:P76257%3B YOAA_ECOLI PROBABLE ATP-DEPENDENT HELICASE YOAA%3B E%3D2e-84 gb:AAG56797.1%3B AE005403_8 (AE005403) enzyme [Escherichia%3B E%3D5e-84 COG: VC1990%3B COG1199 Rad3-related DNA helicases%3B E%3D4e-88 PFAM: PF00270%3B DEAD/DEAH box helicase%3B E%3D0.00011 PF00271%3B Helicase conserved C-terminal%3B E%3D0.5 gene gene4544 http://www.ncbi.nlm.nih.gov/gene/?term=RB8062 RB8064 RB8064 RB8064 4318222 4318440 - hypothetical protein gene gene4545 http://www.ncbi.nlm.nih.gov/gene/?term=RB8064 RB8065 RB8065 RB8065 4318424 4318540 - hypothetical protein gene gene4546 http://www.ncbi.nlm.nih.gov/gene/?term=RB8065 RB8066 RB8066 RB8066 4318519 4318635 - hypothetical protein gene gene4547 http://www.ncbi.nlm.nih.gov/gene/?term=RB8066 RB8067 RB8067 RB8067 4318645 4318842 - hypothetical protein gene gene4548 http://www.ncbi.nlm.nih.gov/gene/?term=RB8067 RB8068 RB8068 RB8068 4318894 4319541 + signal peptide gene gene4549 http://www.ncbi.nlm.nih.gov/gene/?term=RB8068 RB807 RB807 RB807 427858 429036 - transposase PMID: 10708371 best DB hits: BLAST: gb:AAG55028.1%3B AE005248_9 (AE005248) receptor%3B E%3D4e-61 gb:AAG54539.1%3B AE005200_1 (AE005200) Z0271 gene product%3B E%3D1e-60 swissprot:P28917%3B YDCC_ECOLI H REPEAT-ASSOCIATED PROTEIN IN%3B E%3D1e-60 PFAM: PF01811%3B Transposase%3B E%3D1.3e-65 gene gene436 http://www.ncbi.nlm.nih.gov/gene/?term=RB807 RB8070 RB8070 RB8070 4319538 4319717 + hypothetical protein gene gene4550 http://www.ncbi.nlm.nih.gov/gene/?term=RB8070 RB8071 RB8071 RB8071 4319838 4322033 + spectrin alpha chain PMID: 2808524 PMID: 8276898 PMID: 2497103 best DB hits: BLAST: swissprot:P13395%3B SPCA_DROME SPECTRIN ALPHA CHAIN ----- pir:%3B E%3D0.46 gb:AAF47569.1%3B (AE003472) alpha-Spec gene product [alt 2]%3B E%3D0.46 gene gene4551 http://www.ncbi.nlm.nih.gov/gene/?term=RB8071 RB8073 RB8073 abf2 abf2 4322176 4323276 + alpha-L-arabinofuranosidase PMID: 20125575 best DB hits: BLAST: ddbj:BAB05586.1%3B (AP001513) BH1867~~unknown conserved protein%3B E%3D1e-23 pir:B59296%3B alpha-L-arabinofuranosidase II [validated] -%3B E%3D6e-19 embl:CAB89837.1%3B (AJ242516) hypothetical protein [Salmonella%3B E%3D1e-18 gene gene4552 http://www.ncbi.nlm.nih.gov/gene/?term=RB8073 RB8076 RB8076 RB8076 4323454 4323975 + an endonuclease PMID: 11466286 best DB hits: BLAST: embl:CAB93380.1%3B (AL357523) hypothetical protein [Streptomyces%3B E%3D1e-12 swissprot:Q52673%3B YQGF_RHOCA HYPOTHETICAL 17.1 KDA PROTEIN -----%3B E%3D4e-12 swissprot:Q9ZDJ8%3B Y330_RICPR HYPOTHETICAL PROTEIN RP330 -----%3B E%3D2e-11 COG: RP330%3B COG0816 Predicted endonuclease involved in recombination%3B E%3D2e-12 gene gene4553 http://www.ncbi.nlm.nih.gov/gene/?term=RB8076 RB8077 RB8077 RB8077 4324046 4325737 + signal peptide gene gene4554 http://www.ncbi.nlm.nih.gov/gene/?term=RB8077 RB8078 RB8078 arsA arsA 4325750 4327261 + arylsulfatase PMID: 7910580 PMID: 1572648 best DB hits: BLAST: swissprot:P50428%3B ARSA_MOUSE ARYLSULFATASE A PRECURSOR (ASA)%3B E%3D1e-56 embl:CAA36398.1%3B (X52150) arylsulphatase a [Homo sapiens]%3B E%3D4e-55 gb:AAB03341.1%3B (U62317) arylsulfatase A [Homo sapiens]%3B E%3D4e-55 COG: aslA%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D2e-31 PFAM: PF00884%3B Sulfatase%3B E%3D1.6e-47 gene gene4555 http://www.ncbi.nlm.nih.gov/gene/?term=RB8078 RB8079 RB8079 RB8079 4327230 4327388 - hypothetical protein gene gene4556 http://www.ncbi.nlm.nih.gov/gene/?term=RB8079 RB8080 RB8080 hisA hisA 4327385 4328146 - phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase PMID: 2664449 best DB hits: BLAST: swissprot:P74561%3B HIS4_SYNY3%3B E%3D3e-56 pir:A83003%3B phosphoribosylformimino-5-aminoimidazole carboxamide%3B E%3D5e-49 gb:AAF05093.1%3B AF150930_2 (AF150930) phosphoribosyl%3B E%3D2e-46 COG: slr0652%3B COG0106 Phosphoribosylformimino-5-aminoimidazole%3B E%3D3e-57 PA5141%3B COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide%3B E%3D5e-50 NMB0629%3B COG0106 Phosphoribosylformimino-5-aminoimidazole%3B E%3D6e-44 PFAM: PF00977%3B Histidine biosynthesis protein%3B E%3D4.7e-70 gene gene4557 http://www.ncbi.nlm.nih.gov/gene/?term=RB8080 RB8082 RB8082 RB8082 4328116 4329816 + a deoxyribodipyrimidine photolyase-like protein best DB hits: BLAST: pir:S75597%3B hypothetical protein slr1343 - Synechocystis sp. (strain%3B E%3D6e-94 gb:AAG19190.1%3B (AE005016) Vng0705c [Halobacterium sp. NRC-1]%3B E%3D2e-91 pir:G82413%3B conserved hypothetical protein VCA0809 [imported] -%3B E%3D2e-83 COG: slr1343%3B COG3046 Deoxyribodipyrimidine photolyase-related proteins%3B E%3D6e-95 gene gene4558 http://www.ncbi.nlm.nih.gov/gene/?term=RB8082 RB8084 RB8084 RB8084 4329890 4330006 - hypothetical protein gene gene4559 http://www.ncbi.nlm.nih.gov/gene/?term=RB8084 RB8085 RB8085 RB8085 4330030 4331517 + PQQ repeat-containing protein PMID: 11705915 best DB hits: BLAST: gb:AAG31169.1%3B (AF314961) unknown [Salmonella typhimurium]%3B E%3D0.70 PFAM: PF01011%3B PQQ enzyme repeat%3B E%3D0.017 gene gene4560 http://www.ncbi.nlm.nih.gov/gene/?term=RB8085 RB8089 RB8089 RB8089 4331518 4332285 - signal peptide gene gene4561 http://www.ncbi.nlm.nih.gov/gene/?term=RB8089 RB809 RB809 RB809 429085 429444 - hypothetical protein gene gene437 http://www.ncbi.nlm.nih.gov/gene/?term=RB809 RB8091 RB8091 RB8091 4332254 4334476 - hypothetical protein PMID: 20039618 best DB hits: BLAST: ddbj:BAA86452.1%3B (AB032964) KIAA1138 protein [Homo sapiens]%3B E%3D0.74 gene gene4562 http://www.ncbi.nlm.nih.gov/gene/?term=RB8091 RB8093 RB8093 RB8093 4334451 4335641 - signal peptide gene gene4563 http://www.ncbi.nlm.nih.gov/gene/?term=RB8093 RB8095 RB8095 RB8095 4335638 4335838 - hypothetical protein gene gene4564 http://www.ncbi.nlm.nih.gov/gene/?term=RB8095 RB8096 RB8096 RB8096 4335851 4337122 - signal peptide best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.86 gene gene4565 http://www.ncbi.nlm.nih.gov/gene/?term=RB8096 RB8098 RB8098 RB8098 4337119 4337334 - hypothetical protein gene gene4566 http://www.ncbi.nlm.nih.gov/gene/?term=RB8098 RB81 RB81 RB81 30279 30440 + hypothetical protein gene gene45 http://www.ncbi.nlm.nih.gov/gene/?term=RB81 RB8100 RB8100 RB8100 4337464 4337715 + hypothetical protein gene gene4567 http://www.ncbi.nlm.nih.gov/gene/?term=RB8100 RB8101 RB8101 RB8101 4337684 4337875 + hypothetical protein gene gene4568 http://www.ncbi.nlm.nih.gov/gene/?term=RB8101 RB8102 RB8102 RB8102 4337885 4339048 - general secretion pathway protein G PMID: 1588814 PMID: 1309616 best DB hits: BLAST: pir:E83258%3B general secretion pathway protein G PA3101 [imported]%3B E%3D0.063 gb:AAC83358.1%3B (AF092918) outer membrane secretion protein T%3B E%3D0.069 gb:AAC79845.1%3B (AF089753) cellulose-binding protein CbpC%3B E%3D0.24 COG: PA3101%3B COG2165 General secretory pathway proteins G and H and%3B E%3D0.006 PFAM: PF02361%3B Cobalt transport protein%3B E%3D0.11 PF00114%3B Pilin (bacterial filament)%3B E%3D0.011 gene gene4569 http://www.ncbi.nlm.nih.gov/gene/?term=RB8102 RB8103 RB8103 RB8103 4338942 4339313 + hypothetical protein gene gene4570 http://www.ncbi.nlm.nih.gov/gene/?term=RB8103 RB8107 RB8107 RB8107 4339329 4340276 + hypothetical protein gene gene4571 http://www.ncbi.nlm.nih.gov/gene/?term=RB8107 RB8108 RB8108 RB8108 4340324 4343143 - hypothetical protein gene gene4572 http://www.ncbi.nlm.nih.gov/gene/?term=RB8108 RB8113 RB8113 RB8113 4343127 4344044 - ABC transporter ATP-binding protein PMID: 1924314 PMID: 8088782 best DB hits: BLAST: pir:T36523%3B probable ABC-type transport system ATP-binding protein -%3B E%3D4e-37 pir:C72303%3B ABC transporter ATP-binding protein - Thermotoga%3B E%3D6e-34 gb:AAF81232.1%3B (AF263012) ABC transporter ATP binding protein%3B E%3D9e-33 COG: TM1028%3B COG1131 ABC-type multidrug transport system%2C ATPase%3B E%3D5e-35 PFAM: PF00005%3B ABC transporter%3B E%3D5e-43 gene gene4573 http://www.ncbi.nlm.nih.gov/gene/?term=RB8113 RB8116 RB8116 gntR gntR 4344172 4344669 - GntR family transcriptional regulator best DB hits: BLAST: pir:G69999%3B transcriptional regulator GntR related protein ytrA -%3B E%3D4e-13 pir:D72336%3B transcriptional regulator%2C GntR family - Thermotoga%3B E%3D9e-13 gb:AAC62421.1%3B (AF084104) hypothetical protein [Bacillus firmus]%3B E%3D1e-08 COG: BS_ytrA%3B COG1725 Predicted transcriptional regulators%3B E%3D4e-14 BH1940%3B COG1167 Transcriptional regulators containing a%3B E%3D3e-06 BH1164%3B COG1725 Predicted transcriptional regulators%3B E%3D5e-06 PFAM: PF00392%3B Bacterial regulatory proteins%2C gntR%3B E%3D0.0001 gene gene4574 http://www.ncbi.nlm.nih.gov/gene/?term=RB8116 RB8117 RB8117 RB8117 4344626 4346503 + spore cortex protein- membrane protein involved in the export of O-antigen and teichoic acid best DB hits: BLAST: ddbj:BAB06996.1%3B (AP001518) spore cortex protein [Bacillus%3B E%3D0.022 COG: BH3277%3B COG2244 Membrane protein involved in the export of O-antigen%3B E%3D0.002 PFAM: PF01943%3B Polysaccharide biosynthesis pro%3B E%3D0.05 gene gene4575 http://www.ncbi.nlm.nih.gov/gene/?term=RB8117 RB8119 RB8119 RB8119 4346427 4346855 + hypothetical protein gene gene4576 http://www.ncbi.nlm.nih.gov/gene/?term=RB8119 RB812 RB812 RB812 429550 429768 - hypothetical protein gene gene438 http://www.ncbi.nlm.nih.gov/gene/?term=RB812 RB8123 RB8123 fabZ fabZ 4346827 4347360 + beta-hydroxyacyl-ACP dehydratase PMID: 7806516 best DB hits: BLAST: gb:AAF98278.1%3B AF197933_8 (AF197933) beta-hydroxyacyl-ACP%3B E%3D2e-14 gb:AAK04875.1%3B AE006311_6 (AE006311)%3B E%3D3e-14 pir:C82731%3B (3r)-hydroxymyristoyl ACP dehydrase XF1044 [imported] -%3B E%3D6e-14 COG: XF1044%3B COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier%3B E%3D6e-15 PFAM: PF01377%3B Thioester dehydrase%3B E%3D2.1e-18 PF01575%3B MaoC like domain%3B E%3D0.0056 gene gene4577 http://www.ncbi.nlm.nih.gov/gene/?term=RB8123 RB8125 RB8125 fabI fabI 4347357 4348190 + trans-2-enoyl-ACP reductase PMID: 20138198 best DB hits: BLAST: gb:AAF05840.1%3B AF197058_1 (AF197058) trans-2-enoyl-ACP reductase%3B E%3D6e-31 ddbj:BAB06562.1%3B (AP001516) enoyl-[acyl-carrier protein]%3B E%3D5e-29 gb:AAD04184.1%3B (L10036) unknown [Nostoc sp. PCC 7120]%3B E%3D2e-28 COG: BH2843%3B COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH)%3B E%3D5e-30 TM0441%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D1e-09 BS_yfhR%3B COG1028 Dehydrogenases with different specificities%3B E%3D1e-06 PFAM: PF00678%3B Short chain dehydrogenase/redu%3B E%3D7.1e-05 gene gene4578 http://www.ncbi.nlm.nih.gov/gene/?term=RB8125 RB8126 RB8126 ilvE ilvE 4348269 4349126 + branched-chain amino acid aminotransferase catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids gene gene4579 http://www.ncbi.nlm.nih.gov/gene/?term=RB8126 RB8127 RB8127 RB8127 4349191 4349979 + hypothetical protein gene gene4580 http://www.ncbi.nlm.nih.gov/gene/?term=RB8127 RB813 RB813 RB813 429749 429985 - hypothetical protein gene gene439 http://www.ncbi.nlm.nih.gov/gene/?term=RB813 RB8132 RB8132 RB8132 4349972 4350505 + hypothetical protein gene gene4581 http://www.ncbi.nlm.nih.gov/gene/?term=RB8132 RB8134 RB8134 RB8134 4350477 4351796 + recombination factor protein RarA PMID: 93188700 best DB hits: BLAST: embl:CAA19102.1%3B (AL023591) hypothetical protein MLCB1259.27%3B E%3D1e-95 swissprot:Q50739%3B YP59_MYCTU HYPOTHETICAL 47.5 KDA PROTEIN RV2559C%3B E%3D2e-91 embl:CAB93386.1%3B (AL357523) conserved ATPGTP binding protein%3B E%3D2e-90 COG: Rv2559c%3B COG2256 Uncharacterized ATPase related to the helicase%3B E%3D2e-92 ycaJ%3B COG2256 Uncharacterized ATPase related to the helicase subunit%3B E%3D4e-86 HI1590%3B COG2256 Uncharacterized ATPase related to the helicase%3B E%3D1e-85 PFAM: PF01057%3B Parvovirus non-structural pro%3B E%3D0.099 PF00910%3B RNA helicase%3B E%3D0.0011 PF00004%3B ATPase associated with%3B E%3D7.6e-20 gene gene4582 http://www.ncbi.nlm.nih.gov/gene/?term=RB8134 RB8137 RB8137 RB8137 4351882 4352109 - hypothetical protein gene gene4583 http://www.ncbi.nlm.nih.gov/gene/?term=RB8137 RB8138 RB8138 RB8138 4351960 4352187 + hypothetical protein gene gene4584 http://www.ncbi.nlm.nih.gov/gene/?term=RB8138 RB814 RB814 RB814 429942 430241 + transposase PMID: 9761671 PMID: 11823852 best DB hits: BLAST: pir:H83522%3B conserved hypothetical protein PA0979 [imported] -%3B E%3D0.33 PFAM: PF01527%3B Transposase%3B E%3D4.2e-19 gene gene440 http://www.ncbi.nlm.nih.gov/gene/?term=RB814 RB8140 RB8140 RB8140 4352189 4353931 - hypothetical protein best DB hits: BLAST: pir:T47011%3B hypothetical protein [imported] - Yersinia pestis%3B E%3D0.020 embl:CAB58305.1%3B (AL121854) hypothetical protein SCJ33.06c%3B E%3D0.11 pir:E69891%3B cytochrome c biogenesis protein CycX homolog homolog%3B E%3D0.28 gene gene4585 http://www.ncbi.nlm.nih.gov/gene/?term=RB8140 RB8143 RB8143 RB8143 4353961 4354179 - hypothetical protein gene gene4586 http://www.ncbi.nlm.nih.gov/gene/?term=RB8143 RB8144 RB8144 RB8144 4354191 4354622 - hypothetical protein gene gene4587 http://www.ncbi.nlm.nih.gov/gene/?term=RB8144 RB8146 RB8146 RB8146 4354667 4355122 - hypothetical protein gene gene4588 http://www.ncbi.nlm.nih.gov/gene/?term=RB8146 RB8149 RB8149 csrA csrA 4355339 4355551 + carbon storage regulator PMID: 8393005 PMID: 7751274 PMID: 9211896 best DB hits: BLAST: ddbj:BAB07336.1%3B (AP001519) carbon storage regulator [Bacillus%3B E%3D2e-07 swissprot:O83663%3B CSRA_TREPA CARBON STORAGE REGULATOR HOMOLOG%3B E%3D5e-07 swissprot:P44879%3B CSRA_HAEIN CARBON STORAGE REGULATOR HOMOLOG%3B E%3D6e-06 COG: BH3617%3B COG1551 Carbon storage regulator (could also regulate%3B E%3D2e-08 PFAM: PF02599%3B Carbon storage regulator%3B E%3D8.9e-27 gene gene4589 http://www.ncbi.nlm.nih.gov/gene/?term=RB8149 RB815 RB815 RB815 430238 431110 + transposase PMID: 10384242 best DB hits: BLAST: gb:AAB58155.1%3B (U82621) hypothetical protein [Shigella flexneri]%3B E%3D3e-34 gb:AAF09022.1%3B (AF139596) unknown [Shigella flexneri]%3B E%3D3e-34 gb:AAC61713.1%3B (AF081284) Hp1 [Escherichia coli]%3B E%3D1e-33 COG: tra5_g4%3B COG2801 transposase%3B E%3D1e-26 PFAM: PF00665%3B Integrase core domain%3B E%3D5e-39 gene gene441 http://www.ncbi.nlm.nih.gov/gene/?term=RB815 RB8150 RB8150 RB8150 4356002 4357339 - signal peptide gene gene4591 http://www.ncbi.nlm.nih.gov/gene/?term=RB8150 RB8152 RB8152 RB8152 4357496 4357870 + a transcriptional regulator best DB hits: BLAST: pir:C75577%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D1e-13 pir:E70324%3B conserved hypothetical protein aq_268 - Aquifex aeolicus%3B E%3D3e-07 swissprot:P44675%3B YFHP_HAEIN HYPOTHETICAL PROTEIN HI0379 -----%3B E%3D2e-04 COG: DRA0242%3B COG1959 Predicted transcriptional regulator%3B E%3D1e-14 PFAM: PF02082%3B Uncharacterized protein family UPF00%3B E%3D6.3e-10 gene gene4592 http://www.ncbi.nlm.nih.gov/gene/?term=RB8152 RB8153 RB8153 RB8153 4357932 4359392 - hypothetical protein PMID: 8168477 PMID: 10360571 best DB hits: BLAST: swissprot:P56727%3B Y929_THEMA HYPOTHETICAL PROTEIN TM0929 -----%3B E%3D1e-09 embl:CAA57668.1%3B (X82178) orf1 [Thermotoga maritima]%3B E%3D0.34 gb:AAA65436.1%3B (U24145) orf1%3B upstream of ferrodoxin%3B Method:%3B E%3D0.34 gene gene4593 http://www.ncbi.nlm.nih.gov/gene/?term=RB8153 RB8157 RB8157 RB8157 4359389 4360483 - hypothetical protein PMID: 99287316 best DB hits: BLAST: pir:B72315%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D1e-25 pir:T35221%3B probable ATPGTP binding protein - Streptomyces%3B E%3D5e-15 pir:A75429%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D1e-07 COG: TM0930%3B COG0714 MoxR-like ATPases%3B E%3D1e-26 gene gene4594 http://www.ncbi.nlm.nih.gov/gene/?term=RB8157 RB8158 RB8158 RB8158 4360522 4361223 - hypothetical protein gene gene4595 http://www.ncbi.nlm.nih.gov/gene/?term=RB8158 RB8161 RB8161 exoA exoA 4361220 4361990 - exodeoxyribonuclease PMID: 1708495 best DB hits: BLAST: swissprot:P37454%3B EXOA_BACSU EXODEOXYRIBONUCLEASE ----- pir:%3B E%3D7e-78 pir:F64710%3B exodeoxyribonuclease - Helicobacter pylori (strain%3B E%3D3e-72 pir:C71809%3B exodeoxyribonuclease - Helicobacter pylori (strain J99)%3B E%3D2e-71 COG: BS_exoA%3B COG0708 Exonuclease III%3B E%3D7e-79 PFAM: PF01181%3B Deoxyribonuclease I (DNase I)%3B E%3D0.25 PF01260%3B AP endonuclease 1%3B E%3D2e-108 gene gene4596 http://www.ncbi.nlm.nih.gov/gene/?term=RB8161 RB8163 RB8163 RB8163 4361987 4362685 - hypothetical protein best DB hits: BLAST: pir:F75496%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D1e-63 gb:AAG19057.1%3B (AE005004) Vng0533h [Halobacterium sp. NRC-1]%3B E%3D5e-34 embl:CAB93731.1%3B (AL357613) hypothetical protein SC5F8.03c.%3B E%3D9e-30 COG: DR0625%3B COG2013 Uncharacterized ACR%3B E%3D1e-64 gene gene4597 http://www.ncbi.nlm.nih.gov/gene/?term=RB8163 RB8165 RB8165 RB8165 4362702 4362863 - hypothetical protein gene gene4598 http://www.ncbi.nlm.nih.gov/gene/?term=RB8165 RB8167 RB8167 RB8167 4362882 4365650 + hypothetical protein best DB hits: BLAST: pir:G71299%3B conserved hypothetical protein TP0648 - syphilis%3B E%3D0.027 pir:S49376%3B hypothetical protein 3 - Pseudomonas aeruginosa -----%3B E%3D0.11 pir:F69210%3B conserved hypothetical protein MTH83 - Methanobacterium%3B E%3D0.20 COG: TP0648%3B COG0457 TPR-repeat-containing proteins%3B E%3D0.003 PFAM: PF00515%3B TPR Domain%3B E%3D0.0036 gene gene4599 http://www.ncbi.nlm.nih.gov/gene/?term=RB8167 RB817 RB817 RB817 431107 431538 - hypothetical protein gene gene442 http://www.ncbi.nlm.nih.gov/gene/?term=RB817 RB8171 RB8171 RB8171 4365647 4366831 + hypothetical protein PMID: 11259647 gene gene4600 http://www.ncbi.nlm.nih.gov/gene/?term=RB8171 RB8173 RB8173 moxR moxR 4366881 4367900 + MoxR-related protein best DB hits: BLAST: pir:C83106%3B conserved hypothetical protein PA4322 [imported] -%3B E%3D2e-61 pir:G71146%3B hypothetical protein PH0385 - Pyrococcus horikoshii%3B E%3D1e-60 pir:H82493%3B MoxR-related protein VCA0175 [imported] - Vibrio%3B E%3D2e-60 COG: PA4322%3B COG0714 MoxR-like ATPases%3B E%3D2e-62 PFAM: PF00004%3B ATPase associated with%3B E%3D0.0029 PF01078%3B Magnesium chelatase%2C subunit%3B E%3D1.7e-06 gene gene4601 http://www.ncbi.nlm.nih.gov/gene/?term=RB8173 RB8174 RB8174 RB8174 4367851 4368960 + hypothetical protein best DB hits: BLAST: swissprot:P71761%3B YE80_MYCTU HYPOTHETICAL 34.3 KDA PROTEIN RV1480%3B E%3D2e-17 pir:G82493%3B conserved hypothetical protein VCA0174 [imported] -%3B E%3D1e-12 pir:H83261%3B hypothetical protein PA3071 [imported] - Pseudomonas%3B E%3D2e-12 COG: Rv1480%3B COG1721 Uncharacterized ACR%3B E%3D1e-18 PFAM: PF01882%3B Protein of unknown function DUF58%3B E%3D8.4e-16 gene gene4602 http://www.ncbi.nlm.nih.gov/gene/?term=RB8174 RB8176 RB8176 RB8176 4368957 4371071 + inter-alpha-trypsin inhibitor heavy chain H2 [precursor] PMID: 2450046 PMID: 2446322 PMID: 2462430 PMID: 3663330 PMID: 2476436 PMID: 1384548 best DB hits: BLAST: swissprot:P19823%3B ITH2_HUMAN INTER-ALPHA-TRYPSIN INHIBITOR HEAVY%3B E%3D0.69 ref:XP_011910.1%3B similar to inter-alpha (globulin) inhibitor%2C H2%3B E%3D0.69 gene gene4603 http://www.ncbi.nlm.nih.gov/gene/?term=RB8176 RB8177 RB8177 RB8177 4371052 4375008 + hypothetical protein gene gene4604 http://www.ncbi.nlm.nih.gov/gene/?term=RB8177 RB818 RB818 RB818 431574 432953 + reverse transcriptase/maturase PMID: 8828137 best DB hits: BLAST: gb:AAC38715.1%3B (AF030367) maturase-related protein [Streptococcus%3B E%3D2e-46 ddbj:BAA90841.1%3B (AB031210) orf1%3B similar to E. coli ykfC%3B E%3D2e-45 ddbj:BAB03943.1%3B (AP001507) transposase (11) [Bacillus%3B E%3D2e-45 COG: BH0099%3B COG3344 Uncharacterized BCR%3B E%3D2e-46 PFAM: PF00078%3B Reverse transcriptase (RNA-dependen%3B E%3D2.5e-60 gene gene443 http://www.ncbi.nlm.nih.gov/gene/?term=RB818 RB8181 RB8181 RB8181 4375005 4377428 + hypothetical protein best DB hits: PFAM: PF00672%3B HAMP domain%3B E%3D0.22 gene gene4605 http://www.ncbi.nlm.nih.gov/gene/?term=RB8181 RB8186 RB8186 RB8186 4377386 4378576 + signal peptide gene gene4606 http://www.ncbi.nlm.nih.gov/gene/?term=RB8186 RB8188 RB8188 RB8188 4378573 4379352 + glyoxylate-induced protein best DB hits: BLAST: gb:AAG54864.1%3B AE005231_11 (AE005231) glyoxylate-induced protein%3B E%3D9e-21 gb:AAG59852.1%3B AF284750_1 (AF284750) HT036-ISO [Homo sapiens]%3B E%3D1e-20 swissprot:Q44015%3B YGB4_ALCEU HYPOTHETICAL 28.3 KDA PROTEIN IN GBD%3B E%3D1e-20 COG: gip%3B COG1082 Predicted endonucleases%3B E%3D3e-21 gene gene4607 http://www.ncbi.nlm.nih.gov/gene/?term=RB8188 RB8189 RB8189 deaD deaD 4379339 4382134 - ATP-dependent RNA helicase PMID: 8056751 best DB hits: BLAST: pir:G82830%3B ATP-dependent RNA helicase XF0252 [imported] - Xylella%3B E%3D1e-151 swissprot:Q11039%3B DEAD_MYCTU COLD-SHOCK DEAD-BOX PROTEIN A HOMOLOG%3B E%3D1e-128 pir:JX0314%3B DEAD box protein - Klebsiella pneumoniae ----- gb:%3B E%3D1e-128 COG: XF0252%3B COG0513 Superfamily II DNA and RNA helicases%3B E%3D1e-152 PFAM: PF00270%3B DEAD/DEAH box helicase%3B E%3D9.2e-70 PF00271%3B Helicase conserved C-terminal doma%3B E%3D7.8e-35 gene gene4608 http://www.ncbi.nlm.nih.gov/gene/?term=RB8189 RB8191 RB8191 RB8191 4382096 4382314 + hypothetical protein gene gene4609 http://www.ncbi.nlm.nih.gov/gene/?term=RB8191 RB8192 RB8192 RB8192 4382297 4382404 - hypothetical protein gene gene4610 http://www.ncbi.nlm.nih.gov/gene/?term=RB8192 RB8193 RB8193 RB8193 4382501 4382656 + hypothetical protein gene gene4611 http://www.ncbi.nlm.nih.gov/gene/?term=RB8193 RB8194 RB8194 RB8194 4382684 4383916 + hypothetical protein best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene4612 http://www.ncbi.nlm.nih.gov/gene/?term=RB8194 RB8195 RB8195 RB8195 4383964 4384356 - hypothetical protein gene gene4613 http://www.ncbi.nlm.nih.gov/gene/?term=RB8195 RB8199 RB8199 RB8199 4384410 4385729 + hypothetical protein best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.0077 gene gene4614 http://www.ncbi.nlm.nih.gov/gene/?term=RB8199 RB82 RB82 RB82 30494 31135 + cysteine protease PMID: 10192928 best DB hits: BLAST: ddbj:BAB04609.1%3B (AP001510) BH0890~~unknown conserved protein in%3B E%3D2e-31 embl:CAB95973.1%3B (AL360034) hypothetical protein 2SCG4.02c%3B E%3D2e-25 pir:A70710%3B hypothetical protein Rv0790c - Mycobacterium%3B E%3D1e-05 COG: BH0890%3B COG1305 transglutaminases%2C cysteine%3B E%3D2e-32 PFAM: PF01841%3B Transglutaminase-like superfam%3B E%3D0.42 gene gene46 http://www.ncbi.nlm.nih.gov/gene/?term=RB82 RB820 RB820 RB820 432966 433259 + hypothetical protein gene gene444 http://www.ncbi.nlm.nih.gov/gene/?term=RB820 RB8202 RB8202 RB8202 4385820 4386506 - hypothetical protein PMID: 8407798 best DB hits: BLAST: swissprot:P50619%3B YMAB_BACSU HYPOTHETICAL 23.4 KD PROTEIN IN%3B E%3D1e-17 pir:G72261%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D9e-13 gene gene4615 http://www.ncbi.nlm.nih.gov/gene/?term=RB8202 RB8205 RB8205 mpg mpg 4386548 4387249 - N-methylpurine-DNA glycosirase (MPG) PMID: 95134354 best DB hits: BLAST: embl:CAA52615.1%3B (X74509) N-methylpurine-DNA glycosirase (MPG)%3B E%3D9e-26 pdb:1F4R%3B A Chain A%2C Crystal Structure Of The Human Aag Dna Repair%3B E%3D3e-22 gb:AAA58369.1%3B (M71215) alkyl-N-purine-DNA glycosylasee [Homo%3B E%3D5e-22 COG: APE2247%3B COG2094 3-methyladenine DNA glycosylase%3B E%3D8e-18 PFAM: PF02245%3B Methylpurine-DNA glycosylase (M%3B E%3D2.2e-44 gene gene4616 http://www.ncbi.nlm.nih.gov/gene/?term=RB8205 RB8208 RB8208 trzA trzA 4387234 4388472 + chlorohydrolase PMID: 7592318 best DB hits: BLAST: ddbj:BAB05411.1%3B (AP001512) BH1692~~unknown conserved protein in%3B E%3D1e-18 swissprot:Q9RW45%3B Y824_DEIRA HYPOTHETICAL PROTEIN DR0824 -----%3B E%3D1e-16 swissprot:O27549%3B YF05_METTH HYPOTHETICAL PROTEIN MTH1505 -----%3B E%3D5e-16 COG: BH1692%3B COG0402 Cytosine deaminase and related metal-dependent%3B E%3D1e-19 PFAM: PF00744%3B Dihydroorotase-like%3B E%3D0.025 PF01979%3B Adenine deaminase%3B E%3D0.099 PF00962%3B Adenosine/AMP deaminase%3B E%3D0.05 gene gene4617 http://www.ncbi.nlm.nih.gov/gene/?term=RB8208 RB8209 RB8209 RB8209 4388391 4389188 - hypothetical protein best DB hits: PFAM: PF02517%3B CAAX amino terminal protease%3B E%3D0.1 gene gene4618 http://www.ncbi.nlm.nih.gov/gene/?term=RB8209 RB821 RB821 RB821 433321 433638 + hypothetical protein gene gene445 http://www.ncbi.nlm.nih.gov/gene/?term=RB821 RB8210 RB8210 RB8210 4389198 4391078 - lantibiotic mersacidin transporter system PMID: 1349418 best DB hits: BLAST: ddbj:BAB04170.1%3B (AP001508) lantibiotic mersacidin transporter%3B E%3D5e-21 swissprot:P45861%3B YWJA_BACSU HYPOTHETICAL ABC TRANSPORTER%3B E%3D7e-21 ddbj:BAB04845.1%3B (AP001511) ABC transporter (ATP-binding protein)%3B E%3D5e-20 COG: BH0451%3B COG2274 ABC-type bacteriocin/lantibiotic exporters%2C contain%3B E%3D5e-22 BS_ywjA%3B COG1132 ABC-type multidrug/protein/lipid transport system%2C%3B E%3D6e-22 VCA1084%3B COG2274 ABC-type bacteriocin/lantibiotic exporters%2C contain%3B E%3D2e-17 PFAM: PF00005%3B ABC transporter%3B E%3D0.024 gene gene4619 http://www.ncbi.nlm.nih.gov/gene/?term=RB8210 RB8214 RB8214 RB8214 4391179 4392948 - membrane bound transporter best DB hits: BLAST: pir:S76926%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D1e-06 gb:AAC36156.1%3B (AF003632) PilI [Myxococcus xanthus]%3B E%3D0.016 COG: sll1107%3B COG1277 Permease component of an ABC-transporter%3B E%3D9e-08 gene gene4620 http://www.ncbi.nlm.nih.gov/gene/?term=RB8214 RB8217 RB8217 RB8217 4393113 4393709 - hypothetical protein PMID: 11997336 best DB hits: BLAST: pir:H72201%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D1e-14 pir:A70337%3B hypothetical protein aq_408 - Aquifex aeolicus -----%3B E%3D1e-08 gene gene4621 http://www.ncbi.nlm.nih.gov/gene/?term=RB8217 RB8219 RB8219 aspC aspC 4393980 4395161 + aspartate aminotransferase PMID: 8907187 PMID: 10029535 best DB hits: BLAST: ddbj:BAB07069.1%3B (AP001518) aspartate aminotransferase [Bacillus%3B E%3D2e-59 embl:CAC11669.1%3B (AL445064) probable aspartate aminotransferase%3B E%3D9e-55 pir:G69119%3B probable aspartate transaminase (EC 2.6.1.1) MTH1894%3B E%3D2e-54 COG: BH3350%3B COG0436 PLP-dependent aminotransferases%3B E%3D2e-60 PFAM: PF01041%3B DegT/DnrJ/EryC1/StrS family%3B E%3D1.5e-05 PF01053%3B Cys/Met metabolism PLP-depend%3B E%3D5.4e-05 PF00222%3B Aminotransferase class-II%3B E%3D0.28 gene gene4622 http://www.ncbi.nlm.nih.gov/gene/?term=RB8219 RB822 RB822 RB822 433535 433771 - hypothetical protein gene gene446 http://www.ncbi.nlm.nih.gov/gene/?term=RB822 RB8221 RB8221 RB8221 4395234 4396553 + O-acetylhomoserine sulfhydrylase PMID: 7704274 best DB hits: BLAST: ddbj:BAB06322.1%3B (AP001516) O-acetylhomoserine sulfhydrylase%3B E%3D1e-123 pir:D72324%3B O-acetylhomoserine sulfhydrylase - Thermotoga maritima%3B E%3D1e-114 pir:T40463%3B O-acetylhomoserine (thiol)-lyase (EC 4.2.99.10) -%3B E%3D1e-110 COG: BH2603%3B COG2873 O-acetylhomoserine sulfhydrylase%3B E%3D1e-124 DR0921%3B COG0626 Cystathionine beta-lyases/cystathionine%3B E%3D7e-63 PFAM: PF01053%3B Cys/Met metabolism PLP-depend%3B E%3D6.3e-204 gene gene4623 http://www.ncbi.nlm.nih.gov/gene/?term=RB8221 RB8222 RB8222 metX metX 4396604 4398475 + homoserine O-acetyltransferase PMID: 9209059 best DB hits: BLAST: swissprot:P57714%3B METX_PSEAE HOMOSERINE O-ACETYLTRANSFERASE%3B E%3D1e-83 swissprot:P94891%3B METX_LEPME HOMOSERINE O-ACETYLTRANSFERASE%3B E%3D7e-78 swissprot:Q9JZQ5%3B METX_NEIMB HOMOSERINE O-ACETYLTRANSFERASE%3B E%3D1e-77 COG: PA0390%3B COG2021 Homoserine acetyltransferase%3B E%3D1e-84 PA0389%3B COG0500 SAM-dependent methyltransferases%3B E%3D2e-26 MTH1820%3B COG2021 Homoserine acetyltransferase%3B E%3D8e-14 PFAM: PF00561%3B alpha/beta hydrolase fold%3B E%3D6.7e-07 gene gene4624 http://www.ncbi.nlm.nih.gov/gene/?term=RB8222 RB8223 RB8223 RB8223 4398527 4399759 - hypothetical protein best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene4625 http://www.ncbi.nlm.nih.gov/gene/?term=RB8223 RB8226 RB8226 RB8226 4399783 4400097 - signal peptide gene gene4626 http://www.ncbi.nlm.nih.gov/gene/?term=RB8226 RB8227 RB8227 RB8227 4400186 4400365 - hypothetical protein gene gene4627 http://www.ncbi.nlm.nih.gov/gene/?term=RB8227 RB8228 RB8228 RB8228 4400412 4401449 - signal peptide gene gene4628 http://www.ncbi.nlm.nih.gov/gene/?term=RB8228 RB8229 RB8229 RB8229 4401422 4401721 + hypothetical protein gene gene4629 http://www.ncbi.nlm.nih.gov/gene/?term=RB8229 RB8231 RB8231 ilvH ilvH 4401779 4402291 + acetolactate synthase small regulatory subunit PMID: 98037514 best DB hits: BLAST: pir:A69115%3B hypothetical protein MTH1854 - Methanobacterium%3B E%3D4e-13 pir:D69083%3B hypothetical protein MTH162 - Methanobacterium%3B E%3D4e-09 gb:AAB89585.1%3B (AE000988) acetolactate synthase%2C small subunit%2C%3B E%3D5e-07 PFAM: PF01842%3B ACT domain%3B E%3D0.0014 gene gene4630 http://www.ncbi.nlm.nih.gov/gene/?term=RB8231 RB8233 RB8233 hemH hemH 4402467 4403522 + ferrochelatase protoheme ferro-lyase%3B catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme%3B involved in protoheme biosynthesis%3B in some organisms this protein is membrane-associated while in others it is cytosolic gene gene4631 http://www.ncbi.nlm.nih.gov/gene/?term=RB8233 RB8234 RB8234 RB8234 4403418 4404629 - signal peptide gene gene4632 http://www.ncbi.nlm.nih.gov/gene/?term=RB8234 RB8236 RB8236 RB8236 4403595 4403942 + hypothetical protein gene gene4633 http://www.ncbi.nlm.nih.gov/gene/?term=RB8236 RB8238 RB8238 prdX2 prdX2 4403997 4404593 + peroxiredoxin 2 PMID: 9115640 best DB hits: BLAST: ref:XP_009063.1%3B TR00071480_p [Homo sapiens]%3B E%3D2e-62 swissprot:Q61171%3B PDX2_MOUSE PEROXIREDOXIN 2 (THIOREDOXIN%3B E%3D3e-62 swissprot:P32119%3B PDX2_HUMAN PEROXIREDOXIN 2 (THIOREDOXIN%3B E%3D4e-62 COG: PA0848%3B COG0450 Thiol - alkyl hydroperoxide reductases%3B E%3D4e-60 PFAM: PF00578%3B AhpC/TSA family%3B E%3D1e-71 gene gene4634 http://www.ncbi.nlm.nih.gov/gene/?term=RB8238 RB8239 RB8239 RB8239 4404615 4405322 + hypothetical protein gene gene4635 http://www.ncbi.nlm.nih.gov/gene/?term=RB8239 RB8240 RB8240 RB8240 4405428 4407911 + hypothetical protein PMID: 9804807 best DB hits: BLAST: swissprot:P44973%3B 60IM_HAEIN 60 KDA INNER-MEMBRANE PROTEIN HOMOLOG%3B E%3D7e-31 gb:AAG58902.1%3B AE005601_8 (AE005601) 60 KD inner-membrane protein%3B E%3D4e-30 swissprot:P25714%3B 60IM_ECOLI 60 KDA INNER-MEMBRANE PROTEIN -----%3B E%3D4e-30 COG: HI1001%3B COG0706 Preprotein translocase subunit YidC%3B E%3D6e-32 PFAM: PF00595%3B PDZ domain (Also known as DHR or GLG%3B E%3D5.2e-06 PF02096%3B 60Kd inner membrane protein%3B E%3D2.8e-49 gene gene4636 http://www.ncbi.nlm.nih.gov/gene/?term=RB8240 RB8243 RB8243 RB8243 4407852 4408184 - hypothetical protein gene gene4637 http://www.ncbi.nlm.nih.gov/gene/?term=RB8243 RB8245 RB8245 RB8245 4408205 4408444 - hypothetical protein gene gene4638 http://www.ncbi.nlm.nih.gov/gene/?term=RB8245 RB8246 RB8246 RB8246 4408441 4409241 - transmembrane protein best DB hits: BLAST: embl:CAB59607.1%3B (AL132662) transmembrane protein%3B E%3D6e-08 pir:G83504%3B hypothetical protein PA1139 [imported] - Pseudomonas%3B E%3D6e-06 pir:T35659%3B probable transmembrane protein - Streptomyces coelicolor%3B E%3D2e-05 COG: PA1139%3B COG2340 Uncharacterized protein with SCP/PR1 domains%3B E%3D6e-07 gene gene4639 http://www.ncbi.nlm.nih.gov/gene/?term=RB8246 RB8247 RB8247 RB8247 4409183 4409386 - hypothetical protein gene gene4640 http://www.ncbi.nlm.nih.gov/gene/?term=RB8247 RB8248 RB8248 RB8248 4409395 4410156 + carboxymethylenebutenolidase PMID: 11571162 PMID: 89125597 best DB hits: BLAST: embl:CAA98652.1%3B (Z74134) ORF YDL086w [Saccharomyces cerevisiae]%3B E%3D2e-36 gb:AAC69477.1%3B (AF087482) dienelactone hydrolase [Pseudomonas%3B E%3D3e-09 ddbj:BAA74533.1%3B (AB019032) dienelactone hydrolase [Ralstonia%3B E%3D1e-08 COG: YDL086w%3B COG0412 Dienelactone hydrolase and related enzymes%3B E%3D2e-37 PFAM: PF01738%3B Dienelactone hydrolase%3B E%3D4.2e-05 gene gene4641 http://www.ncbi.nlm.nih.gov/gene/?term=RB8248 RB825 RB825 RB825 433831 434184 - hypothetical protein gene gene447 http://www.ncbi.nlm.nih.gov/gene/?term=RB825 RB8253 RB8253 aspS aspS 4410353 4412131 + aspartyl-tRNA synthetase PMID: 2129559 PMID: 1944398 PMID: 10562565 PMID: 10873442 best DB hits: BLAST: swissprot:O32038%3B SYD_BACSU ASPARTYL-TRNA SYNTHETASE%3B E%3D1e-165 ddbj:BAB04971.1%3B (AP001511) aspartyl-tRNA synthetase [Bacillus%3B E%3D1e-161 swissprot:O67589%3B SYD_AQUAE ASPARTYL-TRNA SYNTHETASE%3B E%3D1e-157 COG: BS_aspS%3B COG0173 Aspartyl-tRNA synthetase%3B E%3D1e-166 PFAM: PF01336%3B OB-fold nucleic acid binding dom%3B E%3D2.2e-11 PF00152%3B tRNA synthetases class II (D%2C K%3B E%3D8.2e-21 PF01409%3B tRNA synthetases class II (F)%3B E%3D0.69 gene gene4642 http://www.ncbi.nlm.nih.gov/gene/?term=RB8253 RB8254 RB8254 RB8254 4412322 4414511 + cationic amino acid transporter (cat-1) PMID: 9308174 best DB hits: BLAST: gb:AAB89635.1%3B (AE000991) cationic amino acid transporter (cat-1)%3B E%3D3e-38 gb:AAG20879.1%3B (AE005155) cationic amino acid transporter%3B Cat2%3B E%3D1e-29 gb:AAG18789.1%3B (AE004983) cationic amino acid transporter%3B Cat1%3B E%3D6e-21 COG: AF1612_1%3B COG0531 Amino acid transporters%3B E%3D2e-32 PA5097%3B COG1113 Gamma-aminobutyrate and related permeases%3B E%3D4e-12 BS_ykbA%3B COG0531 Amino acid transporters%3B E%3D8e-12 PFAM: PF00324%3B Amino acid permease%3B E%3D2e-08 gene gene4643 http://www.ncbi.nlm.nih.gov/gene/?term=RB8254 RB8257 RB8257 RB8257 4414523 4414690 - hypothetical protein gene gene4644 http://www.ncbi.nlm.nih.gov/gene/?term=RB8257 RB8258 RB8258 RB8258 4414716 4415126 + hypothetical protein gene gene4645 http://www.ncbi.nlm.nih.gov/gene/?term=RB8258 RB8260 RB8260 RB8260 4415068 4415394 - hypothetical protein PMID: 20150255 best DB hits: BLAST: pir:H72072%3B conserved hypothetical protein CP0257 [imported] -%3B E%3D2e-10 pir:F81677%3B conserved hypothetical protein TC0667 [imported] -%3B E%3D4e-10 pir:B71520%3B hypothetical protein CT388 - Chlamydia trachomatis%3B E%3D6e-10 COG: CPn0497%3B COG1872 Uncharacterized ACR%3B E%3D2e-11 PFAM: PF02594%3B Uncharacterized ACR%2C YggU family COG%3B E%3D4.7e-22 gene gene4646 http://www.ncbi.nlm.nih.gov/gene/?term=RB8260 RB8262 RB8262 putA putA 4415391 4419104 - proline dehydrogenase PMID: 96062224 best DB hits: BLAST: pir:H64526%3B proline dehydrogenase (EC 1.5.99.8)%3B E%3D0.0 pir:B71980%3B proline dehydrogenase (EC 1.5.99.8)%3B E%3D0.0 pir:C81297%3B proline dehydrogenase (EC 1.5.99.8)%3B E%3D1e-180 COG: jhp0048_2%3B COG1012 NAD-dependent aldehyde dehydrogenases%3B E%3D1e-123 Cj1503c_1%3B COG0506 Proline dehydrogenase%3B E%3D2e-56 sll1561_2%3B COG1012 NAD-dependent aldehyde dehydrogenases%3B E%3D1e-51 PFAM: PF01619%3B Proline dehydrogenase%3B E%3D2e-36 PF00171%3B Aldehyde dehydrogenase%3B E%3D0.0014 gene gene4647 http://www.ncbi.nlm.nih.gov/gene/?term=RB8262 RB8265 RB8265 RB8265 4419178 4419603 + thioesterase best DB hits: BLAST: swissprot:O67466%3B YE94_AQUAE HYPOTHETICAL PROTEIN AQ_1494 -----%3B E%3D3e-12 pir:B75463%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D4e-10 pir:I39564%3B hypothetical protein 6 gbd-region [imported] -%3B E%3D1e-08 COG: aq_1494%3B COG0824 Predicted thioesterase%3B E%3D3e-13 gene gene4648 http://www.ncbi.nlm.nih.gov/gene/?term=RB8265 RB8266 RB8266 RB8266 4419639 4420688 + hypothetical protein best DB hits: BLAST: gb:AAK03329.1%3B (AE006164) unknown [Pasteurella multocida]%3B E%3D1e-04 swissprot:Q58707%3B YD11_METJA HYPOTHETICAL PROTEIN MJ1311 -----%3B E%3D2e-04 pir:S47803%3B hypothetical 33.7K protein (avtA-selB intergenic region)%3B E%3D0.002 COG: MJ1311%3B COG1082 Predicted endonucleases%3B E%3D2e-05 gene gene4649 http://www.ncbi.nlm.nih.gov/gene/?term=RB8266 RB8268 RB8268 RB8268 4420685 4421662 + methyltransferase best DB hits: BLAST: swissprot:P73460%3B YB44_SYNY3 HYPOTHETICAL 34.4 KDA PROTEIN SLL1144%3B E%3D2e-40 swissprot:Q9WZX6%3B Y872_THEMA HYPOTHETICAL PROTEIN TM0872 -----%3B E%3D7e-40 gb:AAK02218.1%3B (AE006048) unknown [Pasteurella multocida]%3B E%3D4e-38 COG: sll1144%3B COG0275 Predicted S-adenosylmethionine-dependent%3B E%3D2e-41 PFAM: PF01795%3B MraW methylase%3B E%3D2e-100 gene gene4650 http://www.ncbi.nlm.nih.gov/gene/?term=RB8268 RB827 RB827 RB827 434151 434627 + signal peptide gene gene448 http://www.ncbi.nlm.nih.gov/gene/?term=RB827 RB8271 RB8271 RB8271 4421746 4422867 - hypothetical protein gene gene4651 http://www.ncbi.nlm.nih.gov/gene/?term=RB8271 RB8274 RB8274 RB8274 4422882 4424753 + sensor protein atoS PMID: 8346225 PMID: 9097040 best DB hits: BLAST: swissprot:Q06067%3B ATOS_ECOLI SENSOR PROTEIN ATOS ----- pir:%3B E%3D2e-17 gb:AAD47419.1%3B AF100457_2 (AF100457) histidine kinase [Myxococcus%3B E%3D2e-16 ddbj:BAB04255.1%3B (AP001508) two-component sensor histidine kinase%3B E%3D3e-14 COG: atoS_3%3B COG0642 Sensory transduction histidine kinases%3B E%3D2e-18 Rv1827%3B COG1716 FHA-domain-containing proteins%3B E%3D1e-08 PA2882%3B COG0642 Sensory transduction histidine kinases%3B E%3D2e-08 PFAM: PF00498%3B FHA domain%3B E%3D3.2e-19 PF01590%3B GAF domain%3B E%3D4.8e-18 PF00512%3B His Kinase A (phosphoacceptor) doma%3B E%3D6.6e-07 gene gene4652 http://www.ncbi.nlm.nih.gov/gene/?term=RB8274 RB8275 RB8275 RB8275 4424760 4424897 - hypothetical protein gene gene4653 http://www.ncbi.nlm.nih.gov/gene/?term=RB8275 RB8278 RB8278 RB8278 4424907 4425257 - hypothetical protein gene gene4654 http://www.ncbi.nlm.nih.gov/gene/?term=RB8278 RB8279 RB8279 RB8279 4425128 4425343 + hypothetical protein gene gene4655 http://www.ncbi.nlm.nih.gov/gene/?term=RB8279 RB828 RB828 RB828 434675 435073 + hypothetical protein gene gene449 http://www.ncbi.nlm.nih.gov/gene/?term=RB828 RB8280 RB8280 RB8280 4425318 4425707 + hypothetical protein PMID: 11759840 gene gene4656 http://www.ncbi.nlm.nih.gov/gene/?term=RB8280 RB8281 RB8281 RB8281 4425696 4425938 - hypothetical protein gene gene4657 http://www.ncbi.nlm.nih.gov/gene/?term=RB8281 RB8282 RB8282 RB8282 4426169 4427014 - hypothetical protein gene gene4658 http://www.ncbi.nlm.nih.gov/gene/?term=RB8282 RB8284 RB8284 RB8284 4427175 4428167 - a phopsphoesterase or an exonuclease PMID: 98196666 best DB hits: BLAST: pir:F70440%3B conserved hypothetical protein aq_1630 - Aquifex%3B E%3D3e-18 pir:D71323%3B conserved hypothetical protein TP0436 - syphilis%3B E%3D3e-18 pir:F69999%3B conserved hypothetical protein ytqI - Bacillus subtilis%3B E%3D1e-16 COG: aq_1630%3B COG0618 Exopolyphosphatase-related proteins%3B E%3D3e-19 PFAM: PF01368%3B DHH family%3B E%3D2.4e-12 PF02272%3B DHHA1 domain%3B E%3D2.2e-06 gene gene4659 http://www.ncbi.nlm.nih.gov/gene/?term=RB8284 RB8286 RB8286 ribF ribF 4428183 4429154 - riboflavin kinase (FAD synthetase) PMID: 7772835 PMID: 3023344 best DB hits: BLAST: pir:T35984%3B probable riboflavin kinase (FAD synthetase) -%3B E%3D3e-46 pir:C83077%3B riboflavin kinaseFAD synthase PA4561 [imported] -%3B E%3D4e-42 pir:C82293%3B riboflavin kinaseFMN adenylyltransferase VC0681%3B E%3D2e-41 COG: PA4561%3B COG0196 FAD synthase%3B E%3D4e-43 PFAM: PF01687%3B Riboflavin kinase / FAD synthetase%3B E%3D3.3e-32 gene gene4660 http://www.ncbi.nlm.nih.gov/gene/?term=RB8286 RB8287 RB8287 RB8287 4429273 4430187 - sugar kinase PMID: 20406833 best DB hits: BLAST: pir:H82489%3B conserved hypothetical protein VCA0191 [imported] -%3B E%3D2e-23 pir:G81111%3B conserved hypothetical protein NMB1197%2C NMB1159%3B E%3D4e-21 pir:C72317%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D9e-21 COG: VCA0191_2%3B COG0063 Predicted sugar kinase%3B E%3D8e-24 PFAM: PF01256%3B Uncharacterized protein family UPF00%3B E%3D3.6e-40 gene gene4661 http://www.ncbi.nlm.nih.gov/gene/?term=RB8287 RB829 RB829 RB829 435009 435359 + hypothetical protein gene gene450 http://www.ncbi.nlm.nih.gov/gene/?term=RB829 RB8290 RB8290 RB8290 4430350 4431591 + potassium channel PMID: 8170937 best DB hits: BLAST: pir:S76018%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D2e-61 swissprot:Q58752%3B YD57_METJA POTASSIUM CHANNEL PROTEIN%3B E%3D1e-36 swissprot:Q57604%3B Y13B_METJA POTASSIUM CHANNEL PROTEIN%3B E%3D2e-34 COG: sll0536%3B COG1226 Kef-type K+ transport systems%2C predicted%3B E%3D1e-62 MJ1357%3B COG1226 Kef-type K+ transport systems%2C predicted NAD-binding%3B E%3D1e-37 MJ0138.1%3B COG1226 Kef-type K+ transport systems%2C predicted%3B E%3D2e-35 PFAM: PF00520%3B Ion transport protein%3B E%3D0.45 PF02254%3B KTN NAD-binding domain%3B E%3D5.2e-39 PF02080%3B Potassium channel%3B E%3D2.2e-09 gene gene4662 http://www.ncbi.nlm.nih.gov/gene/?term=RB8290 RB8291 RB8291 purE purE 4431605 4432453 - phosphoribosylcarboxyaminoimidazole mutase (purE) PMID: 98049343 PMID: 8809759 best DB hits: BLAST: gb:AAB89969.1%3B (AE001016) conserved hypothetical protein%3B E%3D4e-29 pir:S76797%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D7e-28 gb:AAD29318.1%3B AF117208_1 (AF117208) circadian phase modifier%3B E%3D2e-24 COG: AF1275%3B COG1691 NCAIR mutase (PurE)-related proteins%3B E%3D4e-30 gene gene4663 http://www.ncbi.nlm.nih.gov/gene/?term=RB8291 RB8293 RB8293 argG argG 4432457 4433791 + argininosuccinate synthase PMID: 20158877 PMID: 90046714 PMID: 3174461 best DB hits: BLAST: pir:H72210%3B argininosuccinate synthase - Thermotoga maritima (strain%3B E%3D2e-97 pir:D75490%3B arginosuccinate synthase - Deinococcus radiodurans%3B E%3D3e-96 pir:C83204%3B argininosuccinate synthase PA3525 [imported] -%3B E%3D2e-87 COG: TM1780%3B COG0137 Argininosuccinate synthase%3B E%3D2e-98 PFAM: PF00764%3B Arginosuccinate synthase%3B E%3D2e-190 gene gene4664 http://www.ncbi.nlm.nih.gov/gene/?term=RB8293 RB8295 RB8295 RB8295 4433907 4434830 - hypothetical protein gene gene4665 http://www.ncbi.nlm.nih.gov/gene/?term=RB8295 RB8300 RB8300 dtd dtd 4434814 4435359 + D-tyrosyl-tRNA(Tyr) deacylase hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr)%3B possible defense mechanism against a harmful effect of D-tyrosine gene gene4666 http://www.ncbi.nlm.nih.gov/gene/?term=RB8300 RB8301 RB8301 RB8301 4435384 4436412 - hypothetical protein gene gene4667 http://www.ncbi.nlm.nih.gov/gene/?term=RB8301 RB8306 RB8306 RB8306 4436602 4437399 + colicin V biosynthesis protein PMID: 2542219 best DB hits: PFAM: PF02674%3B Colicin V production protein%3B E%3D8.4e-14 gene gene4668 http://www.ncbi.nlm.nih.gov/gene/?term=RB8306 RB8309 RB8309 RB8309 4437354 4437554 + hypothetical protein gene gene4669 http://www.ncbi.nlm.nih.gov/gene/?term=RB8309 RB8310 RB8310 accA accA 4437695 4438654 - acetyl-CoA carboxylase carboxyltransferase subunit alpha best DB hits: BLAST: gb:AAK02376.1%3B (AE006064) AccA [Pasteurella multocida]%3B E%3D4e-72 swissprot:P43872%3B ACCA_HAEIN ACETYL-COENZYME A CARBOXYLASE%3B E%3D6e-72 ddbj:BAA77860.1%3B (D83536) Acetyl-CoA carboxylase (EC 6.4.1.2)%2C%3B E%3D1e-68 COG: HI0406%3B COG0825 Acetyl-CoA carboxylase alpha subunit%3B E%3D5e-73 gene gene4670 http://www.ncbi.nlm.nih.gov/gene/?term=RB8310 RB8311 RB8311 RB8311 4438658 4439752 - protein kinase yloP PMID: 7774814 best DB hits: BLAST: pir:H69878%3B probable protein kinase (EC 2.7.1.-) yloP - Bacillus%3B E%3D2e-27 pir:T36717%3B probable serinethreonine protein kinase - Streptomyces%3B E%3D1e-26 pir:T36501%3B probable serinethreonine protein kinase - Streptomyces%3B E%3D2e-26 COG: BS_yloP_1%3B COG0515 Serine/threonine protein kinases%3B E%3D1e-28 PFAM: PF00069%3B Protein kinase domain%3B E%3D3e-39 gene gene4671 http://www.ncbi.nlm.nih.gov/gene/?term=RB8311 RB8313 RB8313 RB8313 4439844 4441088 - glycosyl transferase (WbnE) PMID: 10531250 best DB hits: BLAST: gb:AAD50490.1%3B AF172324_8 (AF172324) WbnE [Escherichia coli]%3B E%3D7e-21 pir:C70036%3B capsular polysaccharide biosynthesis homolog yveN -%3B E%3D2e-19 pir:T35514%3B probable glycosyl transferase - Streptomyces coelicolor%3B E%3D2e-17 COG: BS_yveN%3B COG0438 Predicted glycosyltransferases%3B E%3D2e-20 PFAM: PF00534%3B Glycosyl transferases group 1%3B E%3D9.5e-43 gene gene4672 http://www.ncbi.nlm.nih.gov/gene/?term=RB8313 RB8316 RB8316 whiG whiG 4441097 4441915 - RNA polymerase sigma factor whiG PMID: 2507166 PMID: 94259284 best DB hits: BLAST: pir:S29615%3B whiG protein - Streptoverticillium griseocarneum -----%3B E%3D5e-44 gb:AAB41960.1%3B (U58281) sporulation sigma factor [Streptomyces%3B E%3D9e-44 prf:2013252A%3B RNA polymerase:SUBUNIT%3Dsigma factor [Streptomyces%3B E%3D1e-43 COG: TP0709%3B COG1191 DNA-directed RNA polymerase specialized sigma%3B E%3D8e-41 fliA%3B COG1191 DNA-directed RNA polymerase specialized sigma subunit%3B E%3D2e-38 BS_sigD%3B COG1191 DNA-directed RNA polymerase specialized sigma%3B E%3D7e-34 PFAM: PF01399%3B PCI domain%3B E%3D0.026 PF00140%3B Sigma-70 factor%3B E%3D1.3e-59 gene gene4673 http://www.ncbi.nlm.nih.gov/gene/?term=RB8316 RB8318 RB8318 RB8318 4442037 4442318 - hypothetical protein gene gene4674 http://www.ncbi.nlm.nih.gov/gene/?term=RB8318 RB8319 RB8319 RB8319 4442308 4442421 - hypothetical protein gene gene4675 http://www.ncbi.nlm.nih.gov/gene/?term=RB8319 RB832 RB832 RB832 435506 438748 - cation/multidrug efflux pump PMID: 8407802 best DB hits: BLAST: pir:G64595%3B acriflavine resistance protein - Helicobacter pylori%3B E%3D8e-52 gb:AAC14433.1%3B (AF059041) RND pump protein [Helicobacter pylori]%3B E%3D2e-51 pir:F82171%3B transporter%2C AcrBD/F family VC1673 [imported] - Vibrio%3B E%3D6e-44 COG: HP0607%3B COG0841 Cation/multidrug efflux pump%3B E%3D8e-53 PFAM: PF00873%3B AcrB/AcrD/AcrF family%3B E%3D5.9e-08 gene gene451 http://www.ncbi.nlm.nih.gov/gene/?term=RB832 RB8320 RB8320 flhF flhF 4442485 4443879 - flagellar biosynthesis protein FlhF PMID: 1447978 best DB hits: BLAST: pir:B72319%3B flagellar biosynthesis protein FlhF - Thermotoga%3B E%3D9e-32 ddbj:BAB06156.1%3B (AP001515) flagella-associated protein [Bacillus%3B E%3D3e-22 swissprot:Q01960%3B FLHF_BACSU FLAGELLAR BIOSYNTHESIS PROTEIN FLHF%3B E%3D2e-21 COG: TM0907%3B COG1419 Flagellar GTP-binding protein%3B E%3D8e-33 AF0622%3B COG0541 Signal recognition particle GTPase%3B E%3D3e-09 PFAM: PF00005%3B ABC transporter%3B E%3D0.018 PF00931%3B NB-ARC domain%3B E%3D0.2 PF00004%3B ATPase associated with va%3B E%3D0.13 gene gene4676 http://www.ncbi.nlm.nih.gov/gene/?term=RB8320 RB8323 RB8323 flhA flhA 4443876 4445939 - flagella-associated protein PMID: 8097015 best DB hits: BLAST: ddbj:BAB06157.1%3B (AP001515) flagella-associated protein [Bacillus%3B E%3D1e-119 pir:C72319%3B flagellar biosynthesis protein FlhA - Thermotoga%3B E%3D1e-115 swissprot:P35620%3B FLHA_BACSU FLAGELLAR BIOSYNTHESIS PROTEIN FLHA%3B E%3D1e-114 COG: BH2438%3B COG1298 Flagellar biosynthesis/type III secretory pathway%3B E%3D1e-120 PFAM: PF00771%3B FHIPEP family%3B E%3D1.6e-261 gene gene4677 http://www.ncbi.nlm.nih.gov/gene/?term=RB8323 RB8324 RB8324 RB8324 4445997 4446113 - hypothetical protein gene gene4678 http://www.ncbi.nlm.nih.gov/gene/?term=RB8324 RB8325 RB8325 RB8325 4446139 4447029 - hypothetical protein gene gene4679 http://www.ncbi.nlm.nih.gov/gene/?term=RB8325 RB8326 RB8326 pknB pknB 4447147 4449489 - serine/threonine-protein kinase pknB PMID: 1835671 best DB hits: BLAST: swissprot:P54744%3B PKNB_MYCLE SERINETHREONINE-PROTEIN%3B E%3D2e-35 pir:T36501%3B probable serinethreonine protein kinase - Streptomyces%3B E%3D2e-34 embl:CAB94054.1%3B (AL358672) serinethreonine-protein%3B E%3D4e-34 COG: Rv0014c_1%3B COG0515 Serine/threonine protein kinases%3B E%3D2e-33 PFAM: PF00069%3B Protein kinase domain%3B E%3D3e-52 PF00191%3B Annexin%3B E%3D0.78 gene gene4680 http://www.ncbi.nlm.nih.gov/gene/?term=RB8326 RB8327 RB8327 RB8327 4449338 4449607 - hypothetical protein gene gene4681 http://www.ncbi.nlm.nih.gov/gene/?term=RB8327 RB8328 RB8328 RB8328 4449636 4450601 + CMP-binding protein PMID: 97158661 best DB hits: BLAST: gb:AAB68787.1%3B (U97022) orf%3B similar to the Staphylococcus aureus%3B E%3D6e-35 gb:AAK06020.1%3B AE006422_9 (AE006422) HYPOTHETICAL PROTEIN%3B E%3D2e-29 ddbj:BAB04894.1%3B (AP001511) CMP-binding protein [Bacillus%3B E%3D1e-28 PFAM: PF01336%3B OB-fold nucleic acid binding domain%3B E%3D1.4e-05 PF01966%3B HD domain%3B E%3D1.1e-10 gene gene4682 http://www.ncbi.nlm.nih.gov/gene/?term=RB8328 RB8329 RB8329 RB8329 4450583 4451335 + transcriptional regulator best DB hits: BLAST: pir:E83522%3B conserved hypothetical protein PA0976 [imported] -%3B E%3D6e-63 embl:CAB50783.1%3B (X74218) hypothetical protein [Pseudomonas%3B E%3D3e-62 pir:B82628%3B transcriptional regulator XF1858 [imported] - Xylella%3B E%3D1e-60 COG: PA0976%3B COG0603 Predicted ATPase (PP-loop superfamily)%2C confers%3B E%3D6e-64 XF0999%3B COG0137 Argininosuccinate synthase%3B E%3D3e-04 PFAM: PF02568%3B Thiamine biosynthesis protein%3B E%3D0.087 PF00733%3B Asparagine synthase%3B E%3D0.26 PF00764%3B Arginosuccinate synthase%3B E%3D0.00022 gene gene4683 http://www.ncbi.nlm.nih.gov/gene/?term=RB8329 RB8332 RB8332 RB8332 4451457 4451813 - hypothetical protein gene gene4684 http://www.ncbi.nlm.nih.gov/gene/?term=RB8332 RB8333 RB8333 RB8333 4451489 4451839 + hypothetical protein best DB hits: BLAST: embl:CAB77251.1%3B (AJ249487) accumulation-associated protein%3B E%3D0.75 gene gene4685 http://www.ncbi.nlm.nih.gov/gene/?term=RB8333 RB8335 RB8335 RB8335 4451919 4452278 + hypothetical protein gene gene4686 http://www.ncbi.nlm.nih.gov/gene/?term=RB8335 RB8337 RB8337 RB8337 4452448 4454547 - hypothetical protein gene gene4687 http://www.ncbi.nlm.nih.gov/gene/?term=RB8337 RB834 RB834 RB834 438745 438894 - hypothetical protein gene gene452 http://www.ncbi.nlm.nih.gov/gene/?term=RB834 RB8342 RB8342 RB8342 4454565 4454696 - hypothetical protein gene gene4688 http://www.ncbi.nlm.nih.gov/gene/?term=RB8342 RB8343 RB8343 purB purB 4454677 4456134 + adenylosuccinate lyase Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide gene gene4689 http://www.ncbi.nlm.nih.gov/gene/?term=RB8343 RB8344 RB8344 RB8344 4456118 4456243 + hypothetical protein gene gene4690 http://www.ncbi.nlm.nih.gov/gene/?term=RB8344 RB8345 RB8345 RB8345 4456240 4457583 - hypothetical protein best DB hits: BLAST: gb:AAD19720.1%3B (AF124349) unknown [Zymomonas mobilis]%3B E%3D0.54 PFAM: PF00076%3B RNA recognition motif. (a.k.a. RRM%2C%3B E%3D0.54 gene gene4691 http://www.ncbi.nlm.nih.gov/gene/?term=RB8345 RB8348 RB8348 RB8348 4457580 4457780 - hypothetical protein gene gene4692 http://www.ncbi.nlm.nih.gov/gene/?term=RB8348 RB835 RB835 RB835 438956 440851 - multidrug resistance efflux pump best DB hits: BLAST: pir:A83330%3B probable RND efflux membrane fusion protein precursor%3B E%3D0.001 pir:A83342%3B conserved hypothetical protein PA2430 [imported] -%3B E%3D0.009 gb:AAC38085.1%3B (AF012101) VceA [Vibrio cholerae]%3B E%3D0.040 COG: PA2430%3B COG1566 Multidrug resistance efflux pump%3B E%3D9e-04 PFAM: PF00529%3B HlyD family secretion protein%3B E%3D3.1e-06 gene gene453 http://www.ncbi.nlm.nih.gov/gene/?term=RB835 RB8350 RB8350 RB8350 4457938 4459383 - hypothetical protein gene gene4693 http://www.ncbi.nlm.nih.gov/gene/?term=RB8350 RB8353 RB8353 RB8353 4459374 4459622 + hypothetical protein gene gene4694 http://www.ncbi.nlm.nih.gov/gene/?term=RB8353 RB8355 RB8355 RB8355 4459577 4459735 + hypothetical protein gene gene4695 http://www.ncbi.nlm.nih.gov/gene/?term=RB8355 RB8356 RB8356 RB8356 4459802 4460011 + hypothetical protein gene gene4696 http://www.ncbi.nlm.nih.gov/gene/?term=RB8356 RB8357 RB8357 RB8357 4460004 4460174 - hypothetical protein gene gene4697 http://www.ncbi.nlm.nih.gov/gene/?term=RB8357 RB8359 RB8359 gatC gatC 4460178 4460453 + glutamyl-tRNA (Gln) amidotransferase subunit C PMID: 9342321 best DB hits: BLAST: ddbj:BAB04384.1%3B (AP001509) glutamyl-tRNA (Gln)%3B E%3D2e-13 swissprot:O67904%3B GATC_AQUAE GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE%3B E%3D6e-11 swissprot:O06492%3B GATC_BACSU GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE%3B E%3D7e-10 COG: BH0665%3B COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit%3B E%3D2e-14 BS_yerL%3B COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C%3B E%3D8e-11 PA4482%3B COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit%3B E%3D2e-08 PFAM: PF02686%3B Glu-tRNAGln amidotransferase C su%3B E%3D3e-15 gene gene4698 http://www.ncbi.nlm.nih.gov/gene/?term=RB8359 RB8361 RB8361 RB8361 4460580 4460726 + hypothetical protein gene gene4699 http://www.ncbi.nlm.nih.gov/gene/?term=RB8361 RB8362 RB8362 Pph1 Pph1 4460687 4462144 - protein phosphatase 1 PMID: 11298281 best DB hits: BLAST: gb:AAF81068.1%3B AF223364_3 (AF223364) protein phosphatase 1%3B E%3D9e-32 pir:E71538%3B hypothetical protein CT259 - Chlamydia trachomatis%3B E%3D4e-28 pir:H75265%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D5e-28 COG: CT259%3B COG0631 Protein serine/threonine phosphatases%3B E%3D4e-29 PFAM: PF00481%3B Protein phosphatase 2C%3B E%3D4.9e-09 gene gene4700 http://www.ncbi.nlm.nih.gov/gene/?term=RB8362 RB8363 RB8363 pepT pepT 4462387 4463592 - M20A family peptidase PMID: 8978088 best DB hits: BLAST: pir:B82211%3B peptidase%2C M20A family VC1343 [imported] - Vibrio%3B E%3D1e-34 swissprot:P54542%3B YQJE_BACSU HYPOTHETICAL 39.7 KD PROTEIN IN%3B E%3D2e-32 ddbj:BAB05188.1%3B (AP001512) BH1469~~unknown conserved protein%3B E%3D7e-32 COG: VC1343%3B COG2195 Di- and tripeptidases%3B E%3D1e-35 PA5390%3B COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate%3B E%3D5e-07 HI1348%3B COG2195 Di- and tripeptidases%3B E%3D5e-06 PFAM: PF01546%3B Peptidase M20/M25/M40%3B E%3D6.8e-20 gene gene4701 http://www.ncbi.nlm.nih.gov/gene/?term=RB8363 RB8365 RB8365 RB8365 4463631 4463903 - signal peptide gene gene4702 http://www.ncbi.nlm.nih.gov/gene/?term=RB8365 RB8367 RB8367 RB8367 4463905 4464057 + hypothetical protein gene gene4703 http://www.ncbi.nlm.nih.gov/gene/?term=RB8367 RB8368 RB8368 RB8368 4464030 4465001 - hypothetical protein best DB hits: BLAST: pir:F82221%3B conserved hypothetical protein VC1259 [imported] -%3B E%3D7e-86 pir:D83539%3B conserved hypothetical protein PA0858 [imported] -%3B E%3D4e-81 pir:G75436%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D2e-67 COG: VC1259%3B COG1054 Uncharacterized enzyme related to sulfurtransferases%3B E%3D6e-87 sll0765%3B COG1054 Uncharacterized enzyme related to%3B E%3D5e-67 RP125%3B COG1054 Uncharacterized enzyme related to sulfurtransferases%3B E%3D2e-49 PFAM: PF00581%3B Rhodanese-like domain%3B E%3D1.5e-17 gene gene4704 http://www.ncbi.nlm.nih.gov/gene/?term=RB8368 RB8370 RB8370 RB8370 4465020 4467089 - hypothetical protein best DB hits: PFAM: PF00602%3B Influenza RNA-dependent RNA poly%3B E%3D0.35 gene gene4705 http://www.ncbi.nlm.nih.gov/gene/?term=RB8370 RB8374 RB8374 guaA guaA 4467164 4468927 + GMP synthase contains glutamine-hydrolyzing domain and glutamine amidotransferase%3B GMP-binding domain%3B functions to produce GMP from XMP in the IMP pathway gene gene4706 http://www.ncbi.nlm.nih.gov/gene/?term=RB8374 RB8375 RB8375 RB8375 4469120 4470799 + ABC transporter ATP-binding protein ChvD%3B in Agrobacterium tumefaciens%2C mutations in both Walker boxes were found to affect virulence gene gene4707 http://www.ncbi.nlm.nih.gov/gene/?term=RB8375 RB8376 RB8376 RB8376 4470886 4471233 + hypothetical protein gene gene4708 http://www.ncbi.nlm.nih.gov/gene/?term=RB8376 RB8378 RB8378 RB8378 4471241 4475557 + hypothetical protein gene gene4709 http://www.ncbi.nlm.nih.gov/gene/?term=RB8378 RB838 RB838 RB838 440832 441593 - transcriptional regulator PMID: 10671440 best DB hits: BLAST: gb:AAF20930.1%3B AF207529_4 (AF207529) PhlH [Pseudomonas%3B E%3D2e-04 pir:C70617%3B probable transcriptional regulator Rv0144 - Mycobacterium%3B E%3D0.005 pir:T36792%3B probable transcriptional regulator tetR - Streptomyces%3B E%3D0.022 COG: Rv0144%3B COG1309 Transcriptional regulator%3B E%3D4e-04 PFAM: PF00440%3B Bacterial regulatory proteins%2C tetR%3B E%3D7.5e-12 gene gene454 http://www.ncbi.nlm.nih.gov/gene/?term=RB838 RB8381 RB8381 RB8381 4475559 4475819 + hypothetical protein gene gene4710 http://www.ncbi.nlm.nih.gov/gene/?term=RB8381 RB8383 RB8383 glgP glgP 4475978 4478470 + phosphorylase 2 PMID: 7916624 PMID: 2424788 best DB hits: BLAST: pir:S77252%3B phosphorylase (EC 2.4.1.1) 2 - Synechocystis sp. (strain%3B E%3D0.0 swissprot:P73511%3B PHSG_SYNY3 GLYCOGEN PHOSPHORYLASE ----- pir:%3B E%3D0.0 gb:AAD30476.1%3B AF124787_1 (AF124787) muscle glycogen phosphorylase%3B E%3D0.0 COG: slr1367%3B COG0058 Glucan phosphorylase%3B E%3D0.0 PFAM: PF00343%3B Carbohydrate phosphorylase%3B E%3D0 gene gene4711 http://www.ncbi.nlm.nih.gov/gene/?term=RB8383 RB8384 RB8384 insA insA 4478623 4479924 + InsA (transposase) best DB hits: BLAST: gb:AAD45539.1%3B U70376_1 (U70376) InsA [Streptomyces netropsis]%3B E%3D5e-33 gb:AAG60893.1%3B AF322013_12 (AF322013) ID460 [Bradyrhizobium%3B E%3D8e-33 ddbj:BAA19966.1%3B (D63923) transposase [Acetobacter pasteurianus]%3B E%3D1e-26 gene gene4712 http://www.ncbi.nlm.nih.gov/gene/?term=RB8384 RB8385 RB8385 RB8385 4479935 4480087 + hypothetical protein gene gene4713 http://www.ncbi.nlm.nih.gov/gene/?term=RB8385 RB8387 RB8387 RB8387 4480229 4480744 - hypothetical protein gene gene4714 http://www.ncbi.nlm.nih.gov/gene/?term=RB8387 RB8388 RB8388 RB8388 4480960 4481880 - hypothetical protein PMID: 11481431 gene gene4715 http://www.ncbi.nlm.nih.gov/gene/?term=RB8388 RB8389 RB8389 RB8389 4481915 4484734 - hypothetical protein gene gene4716 http://www.ncbi.nlm.nih.gov/gene/?term=RB8389 RB839 RB839 RB839 441662 441844 + hypothetical protein gene gene455 http://www.ncbi.nlm.nih.gov/gene/?term=RB839 RB8394 RB8394 RB8394 4484815 4485939 - hypothetical protein gene gene4717 http://www.ncbi.nlm.nih.gov/gene/?term=RB8394 RB8396 RB8396 deaD deaD 4486129 4487310 - DEAH-family helicase PMID: 8472961 PMID: 7836307 PMID: 10452953 PMID: 1901561 best DB hits: BLAST: embl:CAB52498.1%3B (AJ131519) DEAH-family helicase%3B E%3D1e-11 swissprot:P24125%3B V51K_BPL79 51.5 KD PROTEIN ----- pir: JU0445%3B E%3D5e-10 embl:CAB63670.1%3B (AJ251789) hypothetical protein [Lactobacillus%3B E%3D1e-08 COG: VC0812_2%3B COG1061 DNA or RNA helicases of superfamily II%3B E%3D1e-08 DR1624%3B COG0513 Superfamily II DNA and RNA helicases%3B E%3D5e-04 PFAM: PF00270%3B DEAD/DEAH box helicase%3B E%3D0.024 PF00271%3B Helicase conserved C-terminal doma%3B E%3D5.5e-07 gene gene4718 http://www.ncbi.nlm.nih.gov/gene/?term=RB8396 RB8397 RB8397 uvrB uvrB 4487470 4489596 - excinuclease ABC subunit B The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands%2C where it probes for the presence of a lesion gene gene4719 http://www.ncbi.nlm.nih.gov/gene/?term=RB8397 RB8399 RB8399 tdk tdk 4489679 4490314 + thymidine kinase catalyzes the formation of thymidine 5'-phosphate from thymidine gene gene4720 http://www.ncbi.nlm.nih.gov/gene/?term=RB8399 RB84 RB84 RB84 31291 31473 - hypothetical protein gene gene47 http://www.ncbi.nlm.nih.gov/gene/?term=RB84 RB8402 RB8402 rnr rnr 4490393 4492687 + ribonuclease R PMID: 9603904 best DB hits: BLAST: ddbj:BAB07272.1%3B (AP001519) ribonuclease R [Bacillus halodurans]%3B E%3D6e-88 swissprot:O32231%3B RNR_BACSU RIBONUCLEASE R (RNASE R) (VACB PROTEIN%3B E%3D8e-84 gb:AAK05040.1%3B AE006328_8 (AE006328) ribonuclease [Lactococcus%3B E%3D3e-76 COG: BH3553_1%3B COG0557 Exoribonucleases%3B E%3D1e-76 PFAM: PF00773%3B RNB-like protein%3B E%3D2e-87 PF00575%3B S1 RNA binding domain%3B E%3D3.2e-08 gene gene4721 http://www.ncbi.nlm.nih.gov/gene/?term=RB8402 RB8404 RB8404 cobT cobT 4492899 4493618 + NAD-dependent deacetylase Modulates the activities of several enzymes which are inactive in their acetylated form gene gene4722 http://www.ncbi.nlm.nih.gov/gene/?term=RB8404 RB8406 RB8406 RB8406 4493600 4494673 - hypothetical protein gene gene4723 http://www.ncbi.nlm.nih.gov/gene/?term=RB8406 RB8407 RB8407 RB8407 4494700 4495545 - hypothetical protein best DB hits: BLAST: pir:T37061%3B probable secreted protein - Streptomyces coelicolor%3B E%3D2e-27 pir:T35483%3B hypothetical protein SC6C5.12c SC6C5.12c - Streptomyces%3B E%3D2e-16 pir:T35506%3B hypothetical protein SC6E10.19c - Streptomyces%3B E%3D9e-11 COG: DR2293%3B COG3021 Uncharacterized BCR%3B E%3D7e-04 PFAM: PF01260%3B AP endonuclease 1%3B E%3D0.88 gene gene4724 http://www.ncbi.nlm.nih.gov/gene/?term=RB8407 RB8409 RB8409 RB8409 4495547 4495840 + hypothetical protein gene gene4725 http://www.ncbi.nlm.nih.gov/gene/?term=RB8409 RB841 RB841 RB841 442147 444654 - subtilisin PMID: 1369081 best DB hits: BLAST: gb:AAB49694.1%3B (U89495) protease [Bacillus sp. PD498]%3B E%3D7e-19 pir:I39973%3B alkaline serine proteinase - Bacillus smithii -----%3B E%3D2e-18 swissprot:P35835%3B SUBN_BACNA SUBTILISIN NAT PRECURSOR -----%3B E%3D1e-17 COG: BS_aprE%3B COG1404 Subtilisin-like serine proteases%3B E%3D2e-18 PFAM: PF00082%3B Subtilase%3B E%3D7.8e-27 gene gene456 http://www.ncbi.nlm.nih.gov/gene/?term=RB841 RB8410 RB8410 RB8410 4495746 4496063 + hypothetical protein best DB hits: BLAST: embl:CAB57873.1%3B (AJ132579) coat protein readthrough [Oat golden%3B E%3D0.10 embl:CAB57874.1%3B (AJ132579) coat protein [Oat golden stripe%3B E%3D0.10 gene gene4726 http://www.ncbi.nlm.nih.gov/gene/?term=RB8410 RB8411 RB8411 RB8411 4496092 4497180 + transcriptional regulator best DB hits: BLAST: pir:H83475%3B probable transcriptional regulator PA1359 [imported] -%3B E%3D0.067 embl:CAA64677.1%3B (X95394) aldehyde dehydrogenase-like protein%3B E%3D0.52 COG: PA1359%3B COG1396 Predicted transcriptional regulators%3B E%3D0.006 PFAM: PF01381%3B Helix-turn-helix%3B E%3D7.3e-11 gene gene4727 http://www.ncbi.nlm.nih.gov/gene/?term=RB8411 RB8414 RB8414 RB8414 4497128 4498204 - hypothetical protein gene gene4728 http://www.ncbi.nlm.nih.gov/gene/?term=RB8414 RB8415 RB8415 RB8415 4498132 4498758 - hypothetical protein best DB hits: PFAM: PF00583%3B Acetyltransferase (GNAT) family%3B E%3D0.72 gene gene4729 http://www.ncbi.nlm.nih.gov/gene/?term=RB8415 RB8417 RB8417 RB8417 4498883 4498999 + hypothetical protein gene gene4730 http://www.ncbi.nlm.nih.gov/gene/?term=RB8417 RB8418 RB8418 priA priA 4498986 4501421 - primosomal protein N PMID: 9086272 best DB hits: BLAST: swissprot:P94461%3B PRIA_BACSU PRIMOSOMAL PROTEIN N' (REPLICATION%3B E%3D1e-130 embl:CAA71348.1%3B (Y10304) priA [Bacillus subtilis]%3B E%3D1e-123 swissprot:P74397%3B PRIA_SYNY3 PRIMOSOMAL PROTEIN N' (REPLICATION%3B E%3D1e-112 COG: BS_priA%3B COG1198 Primosomal protein N' (replication factor Y) -%3B E%3D1e-131 PFAM: PF00005%3B ABC transporter%3B E%3D0.66 PF01443%3B Viral (Superfamily 1) RNA hel%3B E%3D0.33 PF00271%3B Helicase conserved C-terminal%3B E%3D7.8e-09 gene gene4731 http://www.ncbi.nlm.nih.gov/gene/?term=RB8418 RB842 RB842 RB842 444706 444930 - hypothetical protein gene gene457 http://www.ncbi.nlm.nih.gov/gene/?term=RB842 RB8420 RB8420 RB8420 4501382 4501843 + hypothetical protein gene gene4732 http://www.ncbi.nlm.nih.gov/gene/?term=RB8420 RB8421 RB8421 RB8421 4501840 4502310 + signal peptide gene gene4733 http://www.ncbi.nlm.nih.gov/gene/?term=RB8421 RB8422 RB8422 RB8422 4502270 4502428 + hypothetical protein gene gene4734 http://www.ncbi.nlm.nih.gov/gene/?term=RB8422 RB8423 RB8423 atsG atsG 4502421 4504376 - sulfatase atsG PMID: 9634230 best DB hits: BLAST: pir:F70837%3B probable sulfatase (EC 3.1.6.-) atsG - Mycobacterium%3B E%3D1e-40 gb:AAF55607.1%3B (AE003724) CG14291 gene product [Drosophila%3B E%3D1e-20 gb:AAF29467.1%3B (AF156255) N-sulfoglucosamine sulfohydrolase [Mus%3B E%3D3e-20 COG: Rv0296c%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D1e-41 BH1718%3B COG1413 Phycocyanin alpha-subunit phycocyanobilin lyase and%3B E%3D0.010 PFAM: PF00884%3B Sulfatase%3B E%3D5.2e-22 gene gene4735 http://www.ncbi.nlm.nih.gov/gene/?term=RB8423 RB8430 RB8430 mntH mntH 4504479 4505753 - manganese transport protein mntH1 PMID: 10844693 PMID: 10712688 best DB hits: BLAST: pir:T44945%3B hypothetical protein 6 [imported] - Natronobacterium%3B E%3D1e-48 swissprot:Q9RPF3%3B MNT1_PSEAE MANGANESE TRANSPORT PROTEIN MNTH1%3B E%3D1e-18 pir:B83105%3B probable transport protein PA4334 [imported] -%3B E%3D1e-18 COG: PA4334%3B COG1914 Mn2+ and Fe2+ transporters of the NRAMP family%3B E%3D1e-19 PFAM: PF01566%3B Natural resistance-associated macrop%3B E%3D0.00026 gene gene4736 http://www.ncbi.nlm.nih.gov/gene/?term=RB8430 RB8432 RB8432 RB8432 4505767 4506624 + fusion protein best DB hits: BLAST: pir:F70844%3B probable fusion protein - Mycobacterium tuberculosis%3B E%3D1e-07 embl:CAC04235.1%3B (AL391515) conserved hypothetical protein%3B E%3D2e-04 pir:E83611%3B conserved hypothetical protein PA0269 [imported] -%3B E%3D0.020 COG: Rv3327_2%3B COG2128 Uncharacterized ACR%3B E%3D1e-08 gene gene4737 http://www.ncbi.nlm.nih.gov/gene/?term=RB8432 RB8434 RB8434 RB8434 4506660 4506869 + hypothetical protein gene gene4738 http://www.ncbi.nlm.nih.gov/gene/?term=RB8434 RB8437 RB8437 cti cti 4506842 4509907 + cis/trans isomerase PMID: 98027367 best DB hits: BLAST: embl:CAA04438.1%3B (AJ000978) cistrans isomerase [Pseudomonas%3B E%3D0.030 gb:AAD41252.1%3B AF110738_2 (AF110738) Cti [Pseudomonas putida]%3B E%3D0.030 gb:AAD41255.1%3B AF110739_2 (AF110739) Cti [Pseudomonas putida]%3B E%3D0.030 gene gene4739 http://www.ncbi.nlm.nih.gov/gene/?term=RB8437 RB844 RB844 RB844 445096 449727 + surface-associated protein cshA precursor PMID: 93125117 PMID: 95198547 PMID: 11759840 best DB hits: BLAST: pir:S61441%3B surface-associated protein cshA precursor - Streptococcus%3B E%3D6e-05 pir:S27982%3B cshA protein - Streptococcus gordonii (fragment)%3B E%3D0.006 ddbj:BAB10333.1%3B (AB016872) gene_id:K21P3.2~~unknown protein%3B E%3D0.025 PFAM: PF00404%3B Dockerin type I repeat%3B E%3D0.61 gene gene458 http://www.ncbi.nlm.nih.gov/gene/?term=RB844 RB8440 RB8440 RB8440 4509914 4511311 + hypothetical protein best DB hits: BLAST: gb:AAK03766.1%3B (AE006204) unknown [Pasteurella multocida]%3B E%3D0.72 gene gene4740 http://www.ncbi.nlm.nih.gov/gene/?term=RB8440 RB8441 RB8441 RB8441 4511315 4514038 - penicillinase antirepressor penJ PMID: 87307953 best DB hits: BLAST: pir:I39942%3B penicillinase antirepressor penJ - Bacillus%3B E%3D1e-07 swissprot:P12287%3B BLAR_BACLI REGULATORY PROTEIN BLAR1 -----%3B E%3D2e-07 gene gene4741 http://www.ncbi.nlm.nih.gov/gene/?term=RB8441 RB8445 RB8445 RB8445 4514050 4514475 - hypothetical protein best DB hits: BLAST: pir:S74550%3B hypothetical protein slr0240 - Synechocystis sp. (strain%3B E%3D2e-07 swissprot:Q47839%3B COPY_ENTHR COPAB ATPASES METAL-FIST TYPE%3B E%3D0.047 swissprot:O07127%3B YPTY_LACSK HYPOTHETICAL 16.5 KD PROTEIN IN PTSI%3B E%3D0.13 gene gene4742 http://www.ncbi.nlm.nih.gov/gene/?term=RB8445 RB8448 RB8448 RB8448 4514588 4514986 + hypothetical protein gene gene4743 http://www.ncbi.nlm.nih.gov/gene/?term=RB8448 RB8450 RB8450 RB8450 4514838 4516724 + hypothetical protein best DB hits: BLAST: pir:S75290%3B hypothetical protein sll1289 - Synechocystis sp. (strain%3B E%3D0.007 pir:G70687%3B hypothetical protein Rv1732c - Mycobacterium%3B E%3D0.037 ddbj:BAB05296.1%3B (AP001512) cytochrome c biogenesis (thioredoxin)%3B E%3D0.53 COG: sll1289%3B COG0526 Thiol-disulfide isomerase and thioredoxins%3B E%3D7e-04 gene gene4744 http://www.ncbi.nlm.nih.gov/gene/?term=RB8450 RB8455 RB8455 nadD nadD 4516833 4517477 + nicotinate-nucleotide adenylyltransferase PMID: 10894752 best DB hits: BLAST: swissprot:O66452%3B NADD_AQUAE PROBABLE NICOTINATE-NUCLEOTIDE%3B E%3D2e-23 swissprot:P52085%3B NADD_ECOLI NICOTINATE-NUCLEOTIDE%3B E%3D7e-23 gb:AAG54973.1%3B AE005243_2 (AE005243) orf%2C hypothetical protein%3B E%3D1e-22 COG: aq_036%3B COG1057 Nicotinic acid mononucleotide adenylyltransferase%3B E%3D2e-24 gene gene4745 http://www.ncbi.nlm.nih.gov/gene/?term=RB8455 RB8456 RB8456 RB8456 4517483 4518115 + hypothetical protein best DB hits: BLAST: swissprot:P72873%3B Y925_SYNY3 HYPOTHETICAL 23.0 KD PROTEIN sll0925%3B E%3D3e-25 gb:AAC26156.1%3B (AF035751) hypothetical protein [Synechococcus sp.%3B E%3D2e-24 swissprot:P72821%3B YC90_SYNY3 HYPOTHETICAL 21.6 KD PROTEIN SLR1290%3B E%3D5e-24 gene gene4746 http://www.ncbi.nlm.nih.gov/gene/?term=RB8456 RB8457 RB8457 RB8457 4518117 4518458 - hypothetical protein gene gene4747 http://www.ncbi.nlm.nih.gov/gene/?term=RB8457 RB8459 RB8459 rpsR rpsR 4518496 4518663 + 30S ribosomal protein S18 PMID: 6806564 best DB hits: BLAST: swissprot:P21475%3B RS18_BACSU 30S RIBOSOMAL PROTEIN S18 (BS21)%3B E%3D1e-08 pir:S66013%3B ribosomal protein S18 (rpsR) - Bacillus subtilis%3B E%3D1e-08 pir:R3BS18%3B ribosomal protein S18 - Bacillus stearothermophilus%3B E%3D1e-08 COG: BS_rpsR%3B COG0238 Ribosomal protein S18%3B E%3D1e-09 PFAM: PF01084%3B Ribosomal protein S18%3B E%3D2e-16 gene gene4748 http://www.ncbi.nlm.nih.gov/gene/?term=RB8459 RB8462 RB8462 RB8462 4518681 4519142 + 4-hydroxybenzoyl-CoA thioesterase PMID: 9837940 best DB hits: BLAST: ddbj:BAB05718.1%3B (AP001514) 4-hydroxybenzoyl-CoA thioesterase%3B E%3D3e-07 swissprot:O67466%3B YE94_AQUAE HYPOTHETICAL PROTEIN AQ_1494 -----%3B E%3D6e-06 pir:B83525%3B conserved hypothetical protein PA0968 [imported] -%3B E%3D7e-06 COG: BH1999%3B COG0824 Predicted thioesterase%3B E%3D3e-08 gene gene4749 http://www.ncbi.nlm.nih.gov/gene/?term=RB8462 RB8463 RB8463 RB8463 4519130 4519675 - hypothetical protein gene gene4750 http://www.ncbi.nlm.nih.gov/gene/?term=RB8463 RB8464 RB8464 RB8464 4519151 4519621 + hypothetical protein gene gene4751 http://www.ncbi.nlm.nih.gov/gene/?term=RB8464 RB8465 RB8465 fur fur 4519682 4520236 - FurR family transcriptional regulator PMID: 8083178 PMID: 7590316 PMID: 9765558 best DB hits: BLAST: pir:B70423%3B transcriptional regulator FurR family - Aquifex aeolicus%3B E%3D2e-15 swissprot:P48796%3B FUR_CAMJE FERRIC UPTAKE REGULATION PROTEIN%3B E%3D7e-13 swissprot:Q51008%3B FUR_NEIGO FERRIC UPTAKE REGULATION PROTEIN%3B E%3D8e-13 COG: aq_1418%3B COG0735 Fe2+/Zn2+ uptake regulation proteins%3B E%3D2e-16 PFAM: PF01475%3B Ferric uptake regulator family%3B E%3D1.5e-22 gene gene4752 http://www.ncbi.nlm.nih.gov/gene/?term=RB8465 RB8468 RB8468 csyQ csyQ 4520533 4520799 - 3'-phosphoadenosine 5'-phosphosulfate 3'-phosphatase best DB hits: BLAST: swissprot:P46726%3B CYSQ_MYCLE CYSQ PROTEIN HOMOLOG ----- pir:%3B E%3D0.66 gene gene4753 http://www.ncbi.nlm.nih.gov/gene/?term=RB8468 RB8469 RB8469 odc odc 4520779 4521975 + lysine/ornithine decarboxylase PMID: 20528325 best DB hits: BLAST: ddbj:BAA24923.1%3B (AB011029) lysineornithine decarboxylase%3B E%3D5e-59 ddbj:BAA83427.1%3B (AB031066) ornithine decarboxylase [Nicotiana%3B E%3D1e-46 pir:T03035%3B ornithine decarboxylase (EC 4.1.1.17) - common tobacco%3B E%3D1e-46 COG: aq_728%3B COG0019 Diaminopimelate decarboxylase%3B E%3D8e-44 PFAM: PF02784%3B Pyridoxal-dependent decarboxy%3B E%3D4e-55 PF00278%3B Pyridoxal-dependent decarboxy%3B E%3D1.8e-17 gene gene4754 http://www.ncbi.nlm.nih.gov/gene/?term=RB8469 RB8472 RB8472 cht1 cht1 4521990 4523444 + high affinity choline transporter best DB hits: BLAST: gb:AAG36945.1%3B (AF276872) sodium and chloride-dependent%3B E%3D8e-26 embl:CAC03719.1%3B (AJ401467) high affinity choline transporter%3B E%3D1e-25 ddbj:BAA90484.1%3B (AB030947) high-affinity choline transporter%3B E%3D2e-25 COG: PA1418%3B COG0591 Na+/proline%2C Na+/panthothenate symporters and%3B E%3D7e-20 panF%3B COG0591 Na+/proline%2C Na+/panthothenate symporters and related%3B E%3D3e-10 PFAM: PF00474%3B Sodium:solute symporter family%3B E%3D4.5e-05 gene gene4755 http://www.ncbi.nlm.nih.gov/gene/?term=RB8472 RB8473 RB8473 RB8473 4523410 4523535 + hypothetical protein gene gene4756 http://www.ncbi.nlm.nih.gov/gene/?term=RB8473 RB8474 RB8474 RB8474 4523554 4524096 - hypothetical protein gene gene4757 http://www.ncbi.nlm.nih.gov/gene/?term=RB8474 RB8476 RB8476 ppiC ppiC 4524113 4524394 - peptidyl-prolyl cis-trans isomerase C2 PMID: 7925971 PMID: 8163020 best DB hits: BLAST: pir:C83123%3B peptidyl-prolyl cis-trans isomerase C2 PA4176%3B E%3D5e-28 gb:AAG33124.1%3B AF247689_1 (AF247689) parvulin%3B E%3D1e-22 gb:AAG33121.1%3B AF247686_1 (AF247686) parvulin%3B E%3D1e-22 COG: PA4176%3B COG0760 Parvulin-like peptidyl-prolyl isomerase%3B E%3D6e-29 PFAM: PF00639%3B PPIC-type PPIASE domain.%3B E%3D3.1e-24 gene gene4758 http://www.ncbi.nlm.nih.gov/gene/?term=RB8476 RB8478 RB8478 RB8478 4524334 4524759 - hypothetical protein gene gene4759 http://www.ncbi.nlm.nih.gov/gene/?term=RB8478 RB8479 RB8479 RB8479 4524840 4526150 + signal peptide gene gene4760 http://www.ncbi.nlm.nih.gov/gene/?term=RB8479 RB8482 RB8482 psd psd 4526206 4527162 + phosphatidylserine decarboxylase precursor PMID: 3042771 PMID: 2406271 PMID: 1495415 best DB hits: BLAST: pir:F72029%3B phosphatidylserine decarboxylase (EC 4.1.1.65) precursor%3B E%3D3e-65 pir:D81745%3B probable phosphatidylserine decarboxylase (EC 4.1.1.65)%3B E%3D7e-65 pir:E71482%3B phosphatidylserine decarboxylase (EC 4.1.1.65) precursor%3B E%3D9e-61 COG: CPn0839%3B COG0688 Phosphatidylserine decarboxylase%3B E%3D3e-66 PFAM: PF02666%3B Phosphatidylserine decarboxyla%3B E%3D1.9e-61 gene gene4761 http://www.ncbi.nlm.nih.gov/gene/?term=RB8482 RB8484 RB8484 RB8484 4527287 4527634 + hypothetical protein best DB hits: BLAST: pir:T35585%3B hypothetical protein SC6G4.34 - Streptomyces coelicolor%3B E%3D4e-08 embl:CAB88460.1%3B (AL353815) hypothetical protein SCD6.31c%3B E%3D8e-05 pir:C83475%3B hypothetical protein PA1354 [imported] - Pseudomonas%3B E%3D0.002 gene gene4762 http://www.ncbi.nlm.nih.gov/gene/?term=RB8484 RB8485 RB8485 RB8485 4527631 4528884 + ECF subfamily RNA polymerase sigma-70 factor best DB hits: BLAST: pir:T35586%3B hypothetical protein SC6G4.35 SC6G4.35 - Streptomyces%3B E%3D2e-47 pir:G83477%3B probable sigma-70 factor%2C ECF subfamily PA1351%3B E%3D8e-45 swissprot:Q52997%3B YDNY_RHIME HYPOTHETICAL 47.0 KDA PROTEIN IN DNAA%3B E%3D1e-35 COG: PA1351_1%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D2e-17 gene gene4763 http://www.ncbi.nlm.nih.gov/gene/?term=RB8485 RB8487 RB8487 RB8487 4528983 4530158 - signal peptide gene gene4764 http://www.ncbi.nlm.nih.gov/gene/?term=RB8487 RB8490 RB8490 RB8490 4530305 4530841 + hypothetical protein gene gene4765 http://www.ncbi.nlm.nih.gov/gene/?term=RB8490 RB8492 RB8492 sigW sigW 4530812 4531447 - RNA polymerase sigma factor sigW PMID: 8432708 best DB hits: BLAST: swissprot:Q45585%3B SIGW_BACSU RNA POLYMERASE SIGMA FACTOR SIGW%3B E%3D3e-23 gb:AAF18265.1%3B U22895_1 (U22895) alternative sigma factor AlgU%3B E%3D6e-18 ddbj:BAB03982.1%3B (AP001507) RNA polymerase ECF-type sigma factor%3B E%3D2e-17 COG: BS_sigW%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D3e-24 PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D9.9e-15 gene gene4766 http://www.ncbi.nlm.nih.gov/gene/?term=RB8492 RB8494 RB8494 RB8494 4531481 4532854 - prepilin peptidase%2C type IV best DB hits: BLAST: pir:A75321%3B prepilin peptidase%2C type IV - Deinococcus radiodurans%3B E%3D4e-16 swissprot:P72640%3B LEP4_SYNY3 TYPE 4 PREPILIN-LIKE PROTEINS LEADER%3B E%3D3e-15 ddbj:BAA83726.1%3B (AB017809) prepilin peptidase [Escherichia coli]%3B E%3D3e-14 COG: DR2065%3B COG1989 Signal peptidase%2C cleaves prepilin-like proteins%3B E%3D4e-17 PFAM: PF01478%3B Type III leader peptidase famil%3B E%3D8.9e-28 gene gene4767 http://www.ncbi.nlm.nih.gov/gene/?term=RB8494 RB8498 RB8498 phr phr 4532893 4534416 + deoxyribodipyrimidine photolyase PMID: 7813451 PMID: 2668276 best DB hits: BLAST: swissprot:P12769%3B PHR_METTH DEOXYRIBODIPYRIMIDINE PHOTOLYASE (DNA%3B E%3D3e-58 gb:AAF81696.1%3B AF246697_1 (AF246697) CPD-photolyase [Fowlpox%3B E%3D1e-54 swissprot:P34205%3B PHR_CARAU DEOXYRIBODIPYRIMIDINE PHOTOLYASE (DNA%3B E%3D6e-54 COG: MTH904%3B COG0415 Deoxyribodipyrimidine photolyase%3B E%3D3e-59 PFAM: PF00875%3B DNA photolyase%3B E%3D0.0034 gene gene4768 http://www.ncbi.nlm.nih.gov/gene/?term=RB8498 RB8499 RB8499 RB8499 4534503 4535069 - hypothetical protein gene gene4769 http://www.ncbi.nlm.nih.gov/gene/?term=RB8499 RB85 RB85 RB85 31507 32739 + hypothetical protein PMID: 11823852 best DB hits: BLAST: pir:A83071%3B hypothetical protein PA4591 [imported] - Pseudomonas%3B E%3D0.044 swissprot:P50533%3B XCPE_XENLA CHROMOSOME ASSEMBLY PROTEIN XCAP-E%3B E%3D0.26 gb:AAF73831.1%3B AF183959_2 (AF183959) periplasmic linker protein%3B E%3D0.62 COG: PA4591%3B COG0845 Membrane-fusion protein%3B E%3D0.004 gene gene48 http://www.ncbi.nlm.nih.gov/gene/?term=RB85 RB850 RB850 RB850 450001 451803 + signal peptide gene gene459 http://www.ncbi.nlm.nih.gov/gene/?term=RB850 RB8500 RB8500 RB8500 4535044 4535367 - hypothetical protein gene gene4770 http://www.ncbi.nlm.nih.gov/gene/?term=RB8500 RB8501 RB8501 RB8501 4535391 4536536 + hypothetical protein PMID: 99397451 best DB hits: BLAST: ddbj:BAB09588.1%3B (AB018118) gene_id:MRI1.6~~pir D64592~~similar to%3B E%3D5e-46 gb:AAG35309.1%3B AF274868_1 (AF274868) sialidase NanB [Pasteurella%3B E%3D0.050 pir:D64592%3B hypothetical protein HP0580 - Helicobacter pylori%3B E%3D0.42 PFAM: PF02012%3B BNR repeat%3B E%3D0.88 gene gene4771 http://www.ncbi.nlm.nih.gov/gene/?term=RB8501 RB8503 RB8503 RB8503 4536479 4536637 - hypothetical protein gene gene4772 http://www.ncbi.nlm.nih.gov/gene/?term=RB8503 RB8504 RB8504 RB8504 4536661 4536996 - hypothetical protein gene gene4773 http://www.ncbi.nlm.nih.gov/gene/?term=RB8504 RB8505 RB8505 RB8505 4537127 4538446 - serine/threonine protein kinase related protein best DB hits: BLAST: pir:H69064%3B serinethreonine protein kinase related protein -%3B E%3D4e-04 swissprot:P77774%3B YFGL_ECOLI HYPOTHETICAL 41.9 KD PROTEIN IN%3B E%3D0.004 gb:AAG20856.1%3B (AE005154) Vng6189h [Halobacterium sp. NRC-1]%3B E%3D0.007 COG: MTH1485%3B COG1520 Uncharacterized proteins of WD40-like repeat family%3B E%3D4e-05 PFAM: PF01011%3B PQQ enzyme repeat%3B E%3D0.03 gene gene4774 http://www.ncbi.nlm.nih.gov/gene/?term=RB8505 RB8507 RB8507 RB8507 4538454 4538720 - hypothetical protein gene gene4775 http://www.ncbi.nlm.nih.gov/gene/?term=RB8507 RB8509 RB8509 RB8509 4538651 4539046 + hypothetical protein gene gene4776 http://www.ncbi.nlm.nih.gov/gene/?term=RB8509 RB8510 RB8510 hom hom 4539096 4540442 - homoserine dehydrogenase PMID: 1333566 best DB hits: BLAST: pir:F69031%3B homoserine dehydrogenase (EC 1.1.1.3) - Methanobacterium%3B E%3D4e-81 gb:AAF21129.1%3B L78665_3 (L78665) homoserine dehydrogenase%3B E%3D2e-80 swissprot:P29365%3B DHOM_PSEAE HOMOSERINE DEHYDROGENASE (HDH)%3B E%3D1e-77 COG: MTH1232%3B COG0460 Homoserine dehydrogenase%3B E%3D4e-82 PFAM: PF02737%3B 3-hydroxyacyl-CoA dehydrogenase%3B E%3D0.85 PF02254%3B KTN NAD-binding domain%3B E%3D0.19 PF01408%3B Oxidoreductase%2C NAD-bind%3B E%3D0.73 gene gene4777 http://www.ncbi.nlm.nih.gov/gene/?term=RB8510 RB8511 RB8511 RB8511 4540419 4540760 + hypothetical protein gene gene4778 http://www.ncbi.nlm.nih.gov/gene/?term=RB8511 RB8512 RB8512 RB8512 4540573 4540812 - hypothetical protein gene gene4779 http://www.ncbi.nlm.nih.gov/gene/?term=RB8512 RB8513 RB8513 RB8513 4540912 4541316 + hypothetical protein gene gene4780 http://www.ncbi.nlm.nih.gov/gene/?term=RB8513 RB8515 RB8515 yqjH yqjH 4541316 4542917 + hypothetical protein best DB hits: BLAST: swissprot:P54545%3B YQJH_BACSU HYPOTHETICAL 47.0 KD PROTEIN IN%3B E%3D0.15 PFAM: PF00817%3B impB/mucB/samB family%3B E%3D0.87 gene gene4781 http://www.ncbi.nlm.nih.gov/gene/?term=RB8515 RB8516 RB8516 RB8516 4542940 4545015 - secretion protein PMID: 10984043 best DB hits: BLAST: pir:D83024%3B probable secretion protein PA4974 [imported] -%3B E%3D0.28 pir:A82540%3B outer membrane export factor XF2586 [imported] - Xylella%3B E%3D0.31 pir:B83071%3B hypothetical protein PA4592 [imported] - Pseudomonas%3B E%3D0.45 PFAM: PF02321%3B Outer membrane efflux protein%3B E%3D8.2e-07 gene gene4782 http://www.ncbi.nlm.nih.gov/gene/?term=RB8516 RB8518 RB8518 RB8518 4543984 4545096 + signal peptide best DB hits: PFAM: PF00559%3B Retroviral Vif (Viral infectivity) p%3B E%3D0.47 gene gene4783 http://www.ncbi.nlm.nih.gov/gene/?term=RB8518 RB8519 RB8519 RB8519 4545120 4546163 - hypothetical protein gene gene4784 http://www.ncbi.nlm.nih.gov/gene/?term=RB8519 RB8520 RB8520 RB8520 4546045 4546170 + hypothetical protein gene gene4785 http://www.ncbi.nlm.nih.gov/gene/?term=RB8520 RB8522 RB8522 RB8522 4546213 4547121 + rRNA methylase best DB hits: BLAST: embl:CAB76071.1%3B (AL157953) rRNA methylase [Streptomyces%3B E%3D1e-22 swissprot:Q10543%3B Y881_MYCTU HYPOTHETICAL TRNARRNA%3B E%3D7e-18 pir:C82904%3B rRNA methylase UU327 [imported] - Ureaplasma urealyticum%3B E%3D3e-14 COG: Rv0881%3B COG0566 rRNA methylases%3B E%3D7e-19 PFAM: PF00588%3B SpoU rRNA Methylase%3B E%3D2.6e-26 gene gene4786 http://www.ncbi.nlm.nih.gov/gene/?term=RB8522 RB8524 RB8524 lcfA lcfA 4547108 4548595 + 2-acylglycerophosphoethanolamine acyltransferase (aas) PMID: 8969504 best DB hits: BLAST: pir:E71667%3B 2-acylglycerophosphoethanolamine acyltransferase (aas)%3B E%3D6e-18 gb:AAG19674.1%3B (AE005055) Vng1339c [Halobacterium sp. NRC-1]%3B E%3D5e-17 pir:A69831%3B probable acid--CoA ligase (EC 6.2.1.-) yhfL [similarity]%3B E%3D8e-17 COG: RP620_3%3B COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases%3B E%3D5e-19 VNG1339C%3B COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid%3B E%3D5e-18 BS_yhfL%3B COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases%3B E%3D7e-18 PFAM: PF00501%3B AMP-binding enzyme%3B E%3D1.3e-08 PF01781%3B Ribosomal L38e protein family%3B E%3D0.56 gene gene4787 http://www.ncbi.nlm.nih.gov/gene/?term=RB8524 RB8526 RB8526 RB8526 4548811 4549104 - hypothetical protein gene gene4788 http://www.ncbi.nlm.nih.gov/gene/?term=RB8526 RB8527 RB8527 RB8527 4549097 4550089 + hypothetical protein best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene4789 http://www.ncbi.nlm.nih.gov/gene/?term=RB8527 RB8528 RB8528 RB8528 4550184 4550294 + hypothetical protein gene gene4790 http://www.ncbi.nlm.nih.gov/gene/?term=RB8528 RB8529 RB8529 RB8529 4550288 4550716 + signal peptide gene gene4791 http://www.ncbi.nlm.nih.gov/gene/?term=RB8529 RB8530 RB8530 RB8530 4550725 4550886 - cag pathogenicity island protein cag5 best DB hits: BLAST: pir:D64585%3B cag pathogenicity island protein cag5 - Helicobacter%3B E%3D0.63 pir:F71927%3B cag island protein%2C DNA transfer protein - Helicobacter%3B E%3D0.63 gb:AAF80195.1%3B AF282852_5 (AF282852) Cag-beta [Helicobacter%3B E%3D0.63 gene gene4792 http://www.ncbi.nlm.nih.gov/gene/?term=RB8530 RB8531 RB8531 tatC tatC 4550911 4552125 - Sec-independent protein translocase tatC-like protein PMID: 9649434 PMID: 9546395 best DB hits: BLAST: swissprot:O05523%3B YDIJ_BACSU HYPOTHETICAL 29.1 KDA PROTEIN IN%3B E%3D4e-18 swissprot:Q9ZM59%3B TATC_HELPJ SEC-INDEPENDENT PROTEIN TRANSLOCASE%3B E%3D6e-18 swissprot:Q9ZCG6%3B TATC_RICPR SEC-INDEPENDENT PROTEIN TRANSLOCASE%3B E%3D7e-18 COG: BS_ydiJ%3B COG0805 Sec-independent protein secretion pathway component%3B E%3D4e-19 VNG2267G%3B COG0805 Sec-independent protein secretion pathway%3B E%3D9e-06 PFAM: PF00902%3B MttB family UPF0032%3B E%3D4.5e-35 gene gene4793 http://www.ncbi.nlm.nih.gov/gene/?term=RB8531 RB8533 RB8533 pfpI pfpI 4552172 4552762 + intracellular proteinase pfpI best DB hits: BLAST: pir:H75163%3B intracellular proteinase (pfpi) PAB0311 - Pyrococcus%3B E%3D1e-30 pir:F72722%3B hypothetical protein APE0319 - Aeropyrum pernix (strain%3B E%3D4e-30 gb:AAB89965.1%3B (AE001016) intracellular protease (pfpI)%3B E%3D2e-29 COG: PAB0311%3B COG0693 intracellular protease/amidase%3B E%3D1e-31 PFAM: PF01965%3B ThiJ/PfpI family%3B E%3D1.1e-39 gene gene4794 http://www.ncbi.nlm.nih.gov/gene/?term=RB8533 RB8534 RB8534 RB8534 4552802 4552930 + hypothetical protein gene gene4795 http://www.ncbi.nlm.nih.gov/gene/?term=RB8534 RB8535 RB8535 RB8535 4552942 4553163 - hypothetical protein gene gene4796 http://www.ncbi.nlm.nih.gov/gene/?term=RB8535 RB8536 RB8536 RB8536 4553098 4554066 + hypothetical protein gene gene4797 http://www.ncbi.nlm.nih.gov/gene/?term=RB8536 RB8538 RB8538 RB8538 4554117 4554302 - hypothetical protein gene gene4798 http://www.ncbi.nlm.nih.gov/gene/?term=RB8538 RB854 RB854 RB854 451843 452154 - hypothetical protein gene gene460 http://www.ncbi.nlm.nih.gov/gene/?term=RB854 RB8540 RB8540 argA argA 4554349 4554768 + N-acetylglutamate synthase best DB hits: BLAST: pir:A70418%3B conserved hypothetical protein aq_1359 - Aquifex%3B E%3D2e-08 pir:H75488%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D5e-08 pir:B81033%3B N-acetylglutamate synthase NMB1876 [imported] -%3B E%3D9e-07 COG: aq_1359%3B COG1246 N-acetylglutamate synthase and related%3B E%3D2e-09 PFAM: PF00583%3B Acetyltransferase (GNAT) family%3B E%3D6e-15 gene gene4799 http://www.ncbi.nlm.nih.gov/gene/?term=RB8540 RB8541 RB8541 celM celM 4554758 4555831 + endoglucanase best DB hits: BLAST: pir:E75542%3B probable endoglucanase - Deinococcus radiodurans (strain%3B E%3D6e-48 gb:AAG19796.1%3B (AE005064) endoglucanase%3B CelM [Halobacterium sp.%3B E%3D2e-47 pir:A69157%3B endo-1%2C4-beta-glucanase - Methanobacterium%3B E%3D8e-47 COG: DR0229%3B COG1363 Cellulase M and related proteins%3B E%3D6e-49 gene gene4800 http://www.ncbi.nlm.nih.gov/gene/?term=RB8541 RB8542 RB8542 pyrH pyrH 4556001 4557038 - adenylate kinase PMID: 9576794 best DB hits: BLAST: swissprot:O04905%3B UMPK_ARATH URIDYLATE KINASE (UK) (URIDINE%3B E%3D1e-30 pir:T47842%3B URIDYLATE KINASE-like protein - Arabidopsis thaliana%3B E%3D9e-30 gb:AAB27365.1%3B UMP kinase [Saccharomyces cerevisiae%2C Peptide%2C 204%3B E%3D1e-29 COG: YKL024c%3B COG0563 Adenylate kinase and related kinases%3B E%3D1e-30 PFAM: PF00406%3B Adenylate kinase%3B E%3D2.6e-39 gene gene4801 http://www.ncbi.nlm.nih.gov/gene/?term=RB8542 RB8543 RB8543 alaS alaS 4557105 4559942 - alanyl-tRNA synthetase PMID: 7005898 PMID: 7025207 PMID: 6256345 best DB hits: BLAST: pir:H83533%3B alanyl-tRNA synthetase PA0903 [imported] - Pseudomonas%3B E%3D1e-132 swissprot:O67323%3B SYA_AQUAE ALANYL-TRNA SYNTHETASE (ALANINE--TRNA%3B E%3D1e-130 pir:F75289%3B alanyl-tRNA synthetase - Deinococcus radiodurans (strain%3B E%3D1e-129 COG: PA0903%3B COG0013 Alanyl-tRNA synthetase%3B E%3D1e-133 PFAM: PF01411%3B tRNA synthetases class II (A)%3B E%3D2.8e-255 PF02272%3B DHHA1 domain%3B E%3D5.4e-20 gene gene4802 http://www.ncbi.nlm.nih.gov/gene/?term=RB8543 RB8546 RB8546 RB8546 4559942 4560166 - hypothetical protein gene gene4803 http://www.ncbi.nlm.nih.gov/gene/?term=RB8546 RB8547 RB8547 RB8547 4560165 4561271 + peptidase best DB hits: BLAST: pir:F65012%3B hypothetical protein b2385 - Escherichia coli (strain%3B E%3D1e-55 gb:AAG57511.1%3B AE005469_11 (AE005469) peptidase%3B E%3D1e-53 pir:D75419%3B proline dipeptidase - Deinococcus radiodurans (strain%3B E%3D1e-49 COG: ypdF%3B COG0006 Xaa-Pro aminopeptidase%3B E%3D1e-56 PFAM: PF00557%3B metallopeptidase M24%3B E%3D2.9e-50 gene gene4804 http://www.ncbi.nlm.nih.gov/gene/?term=RB8547 RB8548 RB8548 accB accB 4561336 4561863 + acetyl-CoA carboxylase%2C biotin carboxyl carrier protein PMID: 7592499 best DB hits: BLAST: pir:H69580%3B acetyl-CoA carboxylase (biotin carboxyl carrier subunit)%3B E%3D1e-18 gb:AAB00182.1%3B (U36245) biotin carboxyl carrier protein [Bacillus%3B E%3D1e-17 swissprot:P49786%3B BCCP_BACSU BIOTIN CARBOXYL CARRIER PROTEIN OF%3B E%3D1e-17 COG: BS_accB%3B COG0511 Biotin carboxyl carrier protein of acetyl-CoA%3B E%3D1e-19 PFAM: PF00364%3B Biotin-requiring enzyme%3B E%3D1.5e-25 gene gene4805 http://www.ncbi.nlm.nih.gov/gene/?term=RB8548 RB8550 RB8550 accC accC 4561867 4563219 + acetyl-CoA carboxylase biotin carboxylase subunit PMID: 8102363 best DB hits: BLAST: gb:AAB88214.1%3B (U59234) biotin carboxylase [Synechococcus sp. PCC%3B E%3D1e-139 swissprot:Q06862%3B ACCC_ANASP BIOTIN CARBOXYLASE (A SUBUNIT OF%3B E%3D1e-138 pir:S74380%3B biotin carboxylase accC - Synechocystis sp. (strain PCC%3B E%3D1e-136 COG: sll0053%3B COG0439 Biotin carboxylase%3B E%3D1e-137 PFAM: PF00289%3B Carbamoyl-phosphate synthase L%3B E%3D5.1e-48 PF02786%3B Carbamoyl-phosphate synthase L%3B E%3D1.4e-100 PF02785%3B Biotin carboxylase C-terminal%3B E%3D2.7e-58 gene gene4806 http://www.ncbi.nlm.nih.gov/gene/?term=RB8550 RB8551 RB8551 hpnA hpnA 4563289 4564425 + HpnA protein best DB hits: BLAST: embl:CAA04730.1%3B (AJ001401) HpnA protein [Zymomonas mobilis]%3B E%3D3e-17 swissprot:P73212%3B DFRA_SYNY3 DIHYDROFLAVONOL-4-REDUCTASE%3B E%3D1e-13 pir:C83067%3B hypothetical protein PA4631 [imported] - Pseudomonas%3B E%3D3e-12 COG: slr1706%3B COG0451 Nucleoside-diphosphate-sugar epimerases%3B E%3D1e-14 PFAM: PF01370%3B NAD dependent epimerase/dehydra%3B E%3D0.51 PF01073%3B 3-beta hydroxysteroid dehydroge%3B E%3D1.6e-06 gene gene4807 http://www.ncbi.nlm.nih.gov/gene/?term=RB8551 RB8552 RB8552 RB8552 4564021 4564509 - signal peptide gene gene4808 http://www.ncbi.nlm.nih.gov/gene/?term=RB8552 RB8553 RB8553 sigW sigW 4564556 4565191 + ECF sigma factor best DB hits: BLAST: embl:CAC17654.1%3B (AL450450) ECF sigma factor%3B E%3D0.003 ddbj:BAB03982.1%3B (AP001507) RNA polymerase ECF-type sigma%3B E%3D0.005 swissprot:Q45585%3B SIGW_BACSU RNA POLYMERASE SIGMA FACTOR SIGW%3B E%3D0.005 COG: BH0263%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D4e-04 PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D5.2e-10 gene gene4809 http://www.ncbi.nlm.nih.gov/gene/?term=RB8553 RB8555 RB8555 pkn2 pkn2 4565184 4566725 + serine/threonine-specific protein kinase 2 PMID: 7774814 best DB hits: BLAST: pir:B70936%3B probable serinethreonine-specific protein kinase (EC%3B E%3D3e-31 embl:CAA18685.1%3B (AL022602) serinethreonine protein%3B E%3D5e-31 ddbj:BAB06223.1%3B (AP001515) serinethreonine protein kinase%3B E%3D6e-30 COG: Rv2176%3B COG0515 Serine/threonine protein kinases%3B E%3D3e-32 PFAM: PF00069%3B Protein kinase domain%3B E%3D1.2e-49 gene gene4810 http://www.ncbi.nlm.nih.gov/gene/?term=RB8555 RB8557 RB8557 RB8557 4566722 4568275 + hypothetical protein best DB hits: BLAST: pir:G82380%3B hypothetical protein VCA1075 [imported] - Vibrio%3B E%3D0.50 gene gene4811 http://www.ncbi.nlm.nih.gov/gene/?term=RB8557 RB8559 RB8559 RB8559 4568305 4568877 - signal peptide gene gene4812 http://www.ncbi.nlm.nih.gov/gene/?term=RB8559 RB856 RB856 ldh ldh 452224 453138 + L-lactate/malate dehydrogenase PMID: 8404889 PMID: 3098260 best DB hits: BLAST: swissprot:P16115%3B LDH_THEMA L-LACTATE DEHYDROGENASE ----- pir:%3B E%3D2e-51 pdb:1A5Z%3B Lactate Dehydrogenase From Thermotoga Maritima%3B E%3D2e-51 pdb:1LLC%3B L-Lactate Dehydrogenase (E.C.1.1.1.27) Complex With%3B E%3D9e-49 COG: TM1867%3B COG0039 Malate/lactate dehydrogenases%3B E%3D2e-52 PFAM: PF00056%3B lactate/malate dehydrogenase%2C NA%3B E%3D7.5e-36 PF02866%3B lactate/malate dehydrogenase%2C al%3B E%3D5e-36 gene gene461 http://www.ncbi.nlm.nih.gov/gene/?term=RB856 RB8561 RB8561 RB8561 4568962 4570281 - hypothetical protein gene gene4813 http://www.ncbi.nlm.nih.gov/gene/?term=RB8561 RB8562 RB8562 pgm pgm 4570281 4571912 - 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate gene gene4814 http://www.ncbi.nlm.nih.gov/gene/?term=RB8562 RB8563 RB8563 glbN glbN 4572043 4572426 - hemoglobin-like protein HbN PMID: 10500158 PMID: 10636862 best DB hits: BLAST: swissprot:Q10784%3B GLBN_MYCTU HEMOGLOBIN HBN ----- pir: C70761%3B E%3D2e-18 gb:AAA29446.2%3B (M57542) hemoglobin major component [Paramecium%3B E%3D3e-09 swissprot:P15160%3B GLB_PARCA MYOGLOBIN (HEMOGLOBIN) ----- pir:%3B E%3D2e-08 COG: Rv1542c%3B COG2346 Hemoglobin-like proteins%3B E%3D2e-19 PFAM: PF01152%3B Protozoan/cyanobacterial globin%3B E%3D5.3e-25 gene gene4815 http://www.ncbi.nlm.nih.gov/gene/?term=RB8563 RB8565 RB8565 iolI iolI 4572448 4573365 - xylose isomerase PMID: 7952181 best DB hits: BLAST: swissprot:P42419%3B IOLI_BACSU IOLI PROTEIN ----- pir: A69646%3B E%3D0.026 COG: BS_iolI%3B COG1082 Predicted endonucleases%3B E%3D0.002 gene gene4816 http://www.ncbi.nlm.nih.gov/gene/?term=RB8565 RB8568 RB8568 RB8568 4573453 4575297 - hypothetical protein gene gene4817 http://www.ncbi.nlm.nih.gov/gene/?term=RB8568 RB857 RB857 RB857 453154 454224 - hypothetical protein gene gene462 http://www.ncbi.nlm.nih.gov/gene/?term=RB857 RB8572 RB8572 RB8572 4575518 4575709 - hypothetical protein gene gene4818 http://www.ncbi.nlm.nih.gov/gene/?term=RB8572 RB8573 RB8573 RB8573 4575565 4575681 - hypothetical protein gene gene4819 http://www.ncbi.nlm.nih.gov/gene/?term=RB8573 RB8574 RB8574 RB8574 4575727 4576830 - peptidylarginine deiminase or related enzyme best DB hits: BLAST: pir:E75284%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D1e-36 gb:AAK05795.1%3B AE006400_5 (AE006400) conserved hypothetical%3B E%3D1e-35 pir:T50502%3B hypothetical protein T22D6.110 - Arabidopsis thaliana%3B E%3D7e-34 COG: DR2359%3B COG2957 Peptidylarginine deiminase and related enzymes%3B E%3D1e-37 gene gene4820 http://www.ncbi.nlm.nih.gov/gene/?term=RB8574 RB8576 RB8576 RB8576 4576842 4577132 - hypothetical protein gene gene4821 http://www.ncbi.nlm.nih.gov/gene/?term=RB8576 RB858 RB858 RB858 454221 456329 - signal peptide gene gene463 http://www.ncbi.nlm.nih.gov/gene/?term=RB858 RB8580 RB8580 RB8580 4577393 4577734 + sigma-54 modulation protein best DB hits: BLAST: pir:B53373%3B hypothetical protein 1 (rpoN 3' region) - Pseudomonas%3B E%3D0.004 pir:G82065%3B probable sigma-54 modulation protein VC2530 [imported]%3B E%3D0.005 swissprot:P17160%3B RP5M_AZOVI PROBABLE SIGMA(54) MODULATION%3B E%3D0.007 COG: VC2530%3B COG1544 Ribosome-associated protein Y (PSrp-1)%3B E%3D5e-04 PFAM: PF02482%3B Sigma 54 modulation protein / S%3B E%3D0.0074 gene gene4822 http://www.ncbi.nlm.nih.gov/gene/?term=RB8580 RB8584 RB8584 fruA fruA 4577819 4578298 + PTS system%2C fructose-specific enzyme II%2C BC component best DB hits: BLAST: ddbj:BAB04547.1%3B (AP001510) PTS system%2C fructose-specific enzyme%3B E%3D6e-19 gb:AAK05057.1%3B AE006330_5 (AE006330) fructose-specific PTS system%3B E%3D9e-18 ddbj:BAB03332.1%3B (AB035450) fructose specific permease%3B E%3D1e-16 COG: BH0828_1%3B COG1762 Phosphotransferase system%3B E%3D3e-19 TP0085%3B COG1762 Phosphotransferase system mannitol/fructose-specific%3B E%3D5e-16 NMB0736%3B COG1762 Phosphotransferase system%3B E%3D7e-14 PFAM: PF00359%3B Phosphoenolpyruvate-dependent suga%3B E%3D3.6e-13 gene gene4823 http://www.ncbi.nlm.nih.gov/gene/?term=RB8584 RB8588 RB8588 ptsH ptsH 4578438 4578785 + phosphocarrier protein HPr PMID: 9172326 best DB hits: BLAST: swissprot:O83598%3B PTHP_TREPA PHOSPHOCARRIER PROTEIN HPR%3B E%3D8e-11 pir:D69607%3B catabolite repression protein crh [validated] -%3B E%3D1e-09 embl:CAB10076.1%3B (Z97203) histidine containing protein%3B E%3D2e-09 COG: TP0589%3B COG1925 Phosphotransferase system%2C HPr-related proteins%3B E%3D9e-12 PFAM: PF00381%3B PTS HPr component phosphorylation si%3B E%3D5.8e-25 gene gene4824 http://www.ncbi.nlm.nih.gov/gene/?term=RB8588 RB8590 RB8590 RB8590 4578825 4579148 + hypothetical protein gene gene4825 http://www.ncbi.nlm.nih.gov/gene/?term=RB8590 RB8591 RB8591 ptsI ptsI 4579130 4580950 + phosphoenolpyruvate-protein phosphotransferase PMID: 7670643 best DB hits: BLAST: swissprot:P42014%3B PT1_BACST PHOSPHOENOLPYRUVATE-PROTEIN%3B E%3D1e-108 swissprot:O83018%3B PT1_BACSP PHOSPHOENOLPYRUVATE-PROTEIN%3B E%3D1e-108 ddbj:BAB06792.1%3B (AP001517) PTS system%2C enzyme I [Bacillus%3B E%3D1e-106 COG: BH3073%3B COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI%3B E%3D1e-107 PFAM: PF00391%3B PEP-utilizing enzyme%2C mobile%3B E%3D4e-21 PF02896%3B PEP-utilizing enzyme%2C TIM bar%3B E%3D1.4e-115 gene gene4826 http://www.ncbi.nlm.nih.gov/gene/?term=RB8591 RB8592 RB8592 RB8592 4580947 4581648 + hypothetical protein best DB hits: BLAST: pir:S77440%3B hypothetical protein sll1084 - Synechocystis sp. (strain%3B E%3D2e-14 embl:CAB75381.1%3B (AL139298) hypothetical protein SCC88.11c%3B E%3D6e-09 pir:E72374%3B hypothetical protein - Thermotoga maritima (strain%3B E%3D4e-05 COG: sll1084%3B COG1032 Fe-S oxidoreductases family 2%3B E%3D2e-15 PFAM: PF02474%3B Nodulation protein A (NodA)%3B E%3D0.78 gene gene4827 http://www.ncbi.nlm.nih.gov/gene/?term=RB8592 RB8594 RB8594 RB8594 4581645 4581770 + hypothetical protein gene gene4828 http://www.ncbi.nlm.nih.gov/gene/?term=RB8594 RB8595 RB8595 rne rne 4581760 4583364 + ribonuclease E PMID: 2011493 PMID: 8415644 PMID: 11328869 best DB hits: BLAST: pir:B82538%3B ribonuclease E XF2607 [imported] - Xylella fastidiosa%3B E%3D1e-100 pir:H83273%3B ribonuclease E PA2976 [imported] - Pseudomonas%3B E%3D7e-97 gb:AAK03075.1%3B (AE006138) Rne [Pasteurella multocida]%3B E%3D2e-95 COG: XF2607%3B COG1530 Ribonucleases G and E%3B E%3D1e-101 PFAM: PF00575%3B S1 RNA binding domain%3B E%3D3.6e-07 gene gene4829 http://www.ncbi.nlm.nih.gov/gene/?term=RB8595 RB8596 RB8596 mdsA mdsA 4583361 4584935 + mucin-desulfating sulfatase (N-acetylglucosamine-6-sulfatase) PMID: 10809675 best DB hits: BLAST: gb:AAF72520.1%3B AF248951_1 (AF248951) mucin-desulfating sulfatase%3B E%3D2e-56 pir:T44602%3B phosphonate monoester hydrolase (EC 3.1.3.-) PEH%3B E%3D3e-30 pir:F83354%3B probable sulfatase PA2333 [imported] - Pseudomonas%3B E%3D1e-26 COG: PA2333%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D9e-28 PAB0793%3B COG2194 Predicted membrane-associated%2C metal-dependent%3B E%3D9e-08 VC2600%3B COG3083 Predicted hydrolase of alkaline phosphatase%3B E%3D9e-07 PFAM: PF00884%3B Sulfatase%3B E%3D2.6e-65 gene gene4830 http://www.ncbi.nlm.nih.gov/gene/?term=RB8596 RB8597 RB8597 GALNS GALNS 4584856 4586307 + sulfatase atsG PMID: 9634230 best DB hits: BLAST: gb:AAF63858.1%3B (AF112242) N-acetylgalactosamine-6-sulfate%3B E%3D8e-20 ddbj:BAA04535.1%3B (D17629) N-acetylgalactosamine 6-sulfate%3B E%3D3e-18 pir:F70837%3B probable sulfatase (EC 3.1.6.-) atsG - Mycobacterium%3B E%3D2e-15 COG: Rv0296c%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D2e-16 BS_yvgJ%3B COG1368 Phosphoglycerol transferase and related proteins%2C%3B E%3D0.001 PAB0793%3B COG2194 Predicted membrane-associated%2C metal-dependent%3B E%3D0.002 PFAM: PF01663%3B Type I phosphodiesterase / nucle%3B E%3D0.89 PF00884%3B Sulfatase%3B E%3D7.3e-28 gene gene4831 http://www.ncbi.nlm.nih.gov/gene/?term=RB8597 RB8598 RB8598 fdhF fdhF 4586329 4588524 + formate dehydrogenase-like protein PMID: 2941757 PMID: 2211698 PMID: 9036855 best DB hits: BLAST: gb:AAC44462.1%3B (U60056) CbbBc [Ralstonia eutropha]%3B E%3D7e-98 pir:T35749%3B probable formate dehydrogenase - Streptomyces coelicolor%3B E%3D8e-96 pir:A82998%3B probable oxidoreductase PA5181 [imported] - Pseudomonas%3B E%3D7e-93 COG: PA5181%3B COG0243 Anaerobic dehydrogenases%2C typically%3B E%3D6e-94 MTH1552%3B COG3383 Uncharacterized anaerobic dehydrogenase%3B E%3D9e-45 PH1353%3B COG0243 Anaerobic dehydrogenases%2C typically%3B E%3D7e-38 PFAM: PF00384%3B Molybdopterin oxidoreductases%3B E%3D2e-36 PF01568%3B Molydopterin dinucleotide bin%3B E%3D1.7e-08 gene gene4832 http://www.ncbi.nlm.nih.gov/gene/?term=RB8598 RB8599 RB8599 RB8599 4588490 4588870 - hypothetical protein gene gene4833 http://www.ncbi.nlm.nih.gov/gene/?term=RB8599 RB8601 RB8601 RB8601 4588912 4590165 + signal peptide gene gene4834 http://www.ncbi.nlm.nih.gov/gene/?term=RB8601 RB8604 RB8604 ccsA ccsA 4590203 4593886 + cytochrome c-type biogenesis protein PMID: 7610180 PMID: 8617725 best DB hits: BLAST: pir:D81040%3B cytochrome c-type biogenesis protein%2C probable NMB1803%3B E%3D2e-18 pir:B81986%3B probable membrane protein NMA0660 [imported] - Neisseria%3B E%3D2e-18 pir:H71862%3B probable cytochrome C-type biogenesis protein -%3B E%3D7e-17 COG: NMB1803%3B COG0755 Cytochrome c-type biogenesis protein (heme exporter%3B E%3D2e-19 APE2274%3B COG1138 Cytochrome c biogenesis factor%3B E%3D5e-04 NMB1804%3B COG1333 ResB protein required for cytochrome c biosynthesis%3B E%3D0.002 PFAM: PF02590%3B Uncharacterized ACR%2C COG1576%3B E%3D0.15 PF01578%3B Cytochrome C assembly protein%3B E%3D0.036 gene gene4835 http://www.ncbi.nlm.nih.gov/gene/?term=RB8604 RB861 RB861 tolQ tolQ 456326 457825 - biopolymer transport protein PMID: 9371459 best DB hits: BLAST: swissprot:O27101%3B YA22_METTH BIOPOLYMER TRANSPORT PROTEIN%3B E%3D0.006 pir:G83274%3B probable tolQ-type transport protein PA2983 [imported] -%3B E%3D0.009 gb:AAD39910.1%3B AF119047_3 (AF119047) ExbB-like protein [Vibrio%3B E%3D0.013 COG: MTH1022%3B COG0811 Biopolymer transport proteins%3B E%3D6e-04 PFAM: PF01618%3B MotA/TolQ/ExbB proton channel famil%3B E%3D4.6e-05 gene gene464 http://www.ncbi.nlm.nih.gov/gene/?term=RB861 RB8611 RB8611 RB8611 4593970 4594224 + hypothetical protein gene gene4836 http://www.ncbi.nlm.nih.gov/gene/?term=RB8611 RB8612 RB8612 ubiG ubiG 4594213 4595094 - 3-demethylubiquinone-9 3-methyltransferase PMID: 1479344 best DB hits: BLAST: pir:C83249%3B 3-demethylubiquinone-9 3-methyltransferase PA3171%3B E%3D0.004 swissprot:P08442%3B YAT1_SYNP6 ATP SYNTHASE SUBUNITS REGION ORF 1%3B E%3D0.055 pir:S76629%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D0.19 COG: PA3171%3B COG2227%3B E%3D3e-04 gene gene4837 http://www.ncbi.nlm.nih.gov/gene/?term=RB8612 RB8613 RB8613 pfaS pfaS 4595082 4595960 - phosphoribosylformylglycinamidine synthase I (purQ) PMID: 10548741 best DB hits: BLAST: gb:AAB89983.1%3B (AE001017) phosphoribosylformylglycinamidine%3B E%3D2e-33 ddbj:BAA20816.1%3B (AB002359) KIAA0361 [Homo sapiens]%3B E%3D2e-26 swissprot:O15067%3B PUR4_HUMAN PHOSPHORIBOSYLFORMYLGLYCINAMIDINE%3B E%3D2e-26 COG: AF1260%3B COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase%2C%3B E%3D1e-34 NMB1996_2%3B COG0047 Phosphoribosylformylglycinamidine (FGAM)%3B E%3D3e-22 HI0752_2%3B COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase%2C%3B E%3D1e-20 gene gene4838 http://www.ncbi.nlm.nih.gov/gene/?term=RB8613 RB8615 RB8615 RB8615 4595974 4598340 + thioredoxin related protein ykvV best DB hits: BLAST: pir:E69869%3B thioredoxin related protein ykvV - Bacillus subtilis%3B E%3D1e-07 pir:E69891%3B cytochrome c biogenesis protein CycX homolog homolog%3B E%3D4e-07 swissprot:P43221%3B TLPA_BRAJA THIOL:DISULFIDE INTERCHANGE PROTEIN%3B E%3D3e-06 COG: BS_ykvV%3B COG0526 Thiol-disulfide isomerase and thioredoxins%3B E%3D9e-09 PFAM: PF02369%3B Bacterial Ig-like domain (group 1)%3B E%3D0.033 gene gene4839 http://www.ncbi.nlm.nih.gov/gene/?term=RB8615 RB862 RB862 RB862 457775 457945 + hypothetical protein gene gene465 http://www.ncbi.nlm.nih.gov/gene/?term=RB862 RB8622 RB8622 RB8622 4598321 4599388 + hypothetical protein gene gene4840 http://www.ncbi.nlm.nih.gov/gene/?term=RB8622 RB8625 RB8625 RB8625 4599385 4599855 + signal peptide gene gene4841 http://www.ncbi.nlm.nih.gov/gene/?term=RB8625 RB8628 RB8628 RB8628 4599960 4600265 + hypothetical protein gene gene4842 http://www.ncbi.nlm.nih.gov/gene/?term=RB8628 RB8629 RB8629 RB8629 4600323 4600619 + hypothetical protein best DB hits: BLAST: pir:B70403%3B hypothetical protein aq_1194 - Aquifex aeolicus -----%3B E%3D0.009 swissprot:P72821%3B YC90_SYNY3 HYPOTHETICAL 21.6 KD PROTEIN SLR1290%3B E%3D0.013 pir:T34610%3B hypothetical protein SC10A7.07 - Streptomyces coelicolor%3B E%3D0.069 gene gene4843 http://www.ncbi.nlm.nih.gov/gene/?term=RB8629 RB863 RB863 RB863 457928 458119 - hypothetical protein gene gene466 http://www.ncbi.nlm.nih.gov/gene/?term=RB863 RB8630 RB8630 RB8630 4600763 4601035 + hypothetical protein gene gene4844 http://www.ncbi.nlm.nih.gov/gene/?term=RB8630 RB8633 RB8633 argD argD 4601126 4602520 + acetylornithine aminotransferase PMID: 2199330 best DB hits: BLAST: swissprot:Q58131%3B ARGD_METJA ACETYLORNITHINE AMINOTRANSFERASE%3B E%3D2e-23 swissprot:P30268%3B YKAB_BACFI PROBABLE AMINOTRANSFERASE IN KATA%3B E%3D3e-19 embl:CAC11216.1%3B (AL445063) L-2%2C%3B E%3D5e-19 COG: MJ0721%3B COG0160 PLP-dependent aminotransferases%3B E%3D2e-24 PFAM: PF00202%3B Aminotransferase class-III%3B E%3D1.7e-39 gene gene4845 http://www.ncbi.nlm.nih.gov/gene/?term=RB8633 RB8634 RB8634 RB8634 4602560 4602715 + hypothetical protein gene gene4846 http://www.ncbi.nlm.nih.gov/gene/?term=RB8634 RB8635 RB8635 ykuE ykuE 4602649 4603914 - phosphoesterase ykuE best DB hits: BLAST: pir:B69865%3B probable phosphoesterase (EC 3.1.-.-) ykuE - Bacillus%3B E%3D1e-16 gb:AAB08594.1%3B (U70214) hypothetical [Escherichia coli]%3B E%3D1e-15 pir:D64740%3B probable phosphoesterase (EC 3.1.-.-) yaeI - Escherichia%3B E%3D1e-15 COG: BS_ykuE%3B COG1408 Predicted phosphohydrolases%3B E%3D1e-17 PFAM: PF02549%3B DNA repair exonuclease%3B E%3D0.12 gene gene4847 http://www.ncbi.nlm.nih.gov/gene/?term=RB8635 RB8637 RB8637 sixA sixA 4603872 4604477 - phosphohistidine phosphatase best DB hits: BLAST: pir:T36773%3B hypothetical protein SCI28.03c - Streptomyces coelicolor%3B E%3D2e-12 pir:T49094%3B hypothetical protein F4F15.260 - Arabidopsis thaliana%3B E%3D5e-12 swissprot:Q11043%3B YC76_MYCTU HYPOTHETICAL 16.5 KDA PROTEIN RV1276C%3B E%3D3e-08 COG: Rv1276c%3B COG2062 Phosphohistidine phosphatase SixA%3B E%3D3e-09 slr1124%3B COG0406 Phosphoglycerate mutase/fructose-2%2C6-bisphosphatase%3B E%3D0.001 Cj1002c%3B COG2062 Phosphohistidine phosphatase SixA%3B E%3D0.002 PFAM: PF00300%3B Phosphoglycerate mutase%3B E%3D0.013 gene gene4848 http://www.ncbi.nlm.nih.gov/gene/?term=RB8637 RB8639 RB8639 RB8639 4604495 4605874 + hypothetical protein best DB hits: BLAST: gb:AAG20856.1%3B (AE005154) Vng6189h [Halobacterium sp. NRC-1]%3B E%3D5e-05 pir:H69064%3B serinethreonine protein kinase related protein -%3B E%3D0.005 pir:C82804%3B conserved hypothetical protein XF0464 [imported] -%3B E%3D0.053 COG: MTH1485%3B COG1520 Uncharacterized proteins of WD40-like repeat family%3B E%3D5e-04 PFAM: PF01011%3B PQQ enzyme repeat%3B E%3D0.27 gene gene4849 http://www.ncbi.nlm.nih.gov/gene/?term=RB8639 RB864 RB864 RB864 458119 458598 + hypothetical protein gene gene467 http://www.ncbi.nlm.nih.gov/gene/?term=RB864 RB8641 RB8641 RB8641 4605970 4606248 + hypothetical protein gene gene4850 http://www.ncbi.nlm.nih.gov/gene/?term=RB8641 RB8644 RB8644 RB8644 4606349 4606828 + hypothetical protein best DB hits: BLAST: gb:AAF29108.1%3B AF161493_1 (AF161493) HSPC144 [Homo sapiens]%3B E%3D7e-35 gb:AAG43118.1%3B AF059619_1 (AF059619) My005 protein [Homo sapiens]%3B E%3D7e-35 pir:C82610%3B conserved hypothetical protein XF2014 [imported] -%3B E%3D3e-31 COG: XF2014%3B COG2947 Uncharacterized BCR%3B E%3D3e-32 gene gene4851 http://www.ncbi.nlm.nih.gov/gene/?term=RB8644 RB8646 RB8646 RB8646 4606868 4607347 - hypothetical protein gene gene4852 http://www.ncbi.nlm.nih.gov/gene/?term=RB8646 RB8648 RB8648 RB8648 4607282 4607563 + hypothetical protein gene gene4853 http://www.ncbi.nlm.nih.gov/gene/?term=RB8648 RB8649 RB8649 cypH cypH 4607622 4608245 + peptidylprolyl isomerase PMID: 8694762 best DB hits: BLAST: pir:T02489%3B peptidylprolyl isomerase (EC 5.2.1.8) F23F1.12 -%3B E%3D2e-55 pir:T50837%3B cyclophilin CYP5 [imported] - Arabidopsis thaliana%3B E%3D3e-55 pir:T50838%3B cyclophilin ROC7 [imported] - Arabidopsis thaliana%3B E%3D1e-53 COG: slr1251%3B COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) -%3B E%3D6e-54 PFAM: PF00160%3B Cyclophilin type peptidyl-proly%3B E%3D1.4e-105 gene gene4854 http://www.ncbi.nlm.nih.gov/gene/?term=RB8649 RB865 RB865 RB865 458731 460359 + hypothetical protein PMID: 8918248 best DB hits: BLAST: swissprot:P94661%3B EUO2_CHLPS EARLY UPSTREAM OPEN READING FRAME%3B E%3D0.25 swissprot:Q06566%3B EUO1_CHLPS EARLY UPSTREAM OPEN READING FRAME%3B E%3D0.42 swissprot:Q9Z7Z2%3B Y561_CHLPN HYPOTHETICAL PROTEIN CPN0561CP0189%3B E%3D0.44 gene gene468 http://www.ncbi.nlm.nih.gov/gene/?term=RB865 RB8651 RB8651 RB8651 4608494 4609975 + hypothetical protein best DB hits: BLAST: pir:S75346%3B hypothetical protein slr2013 - Synechocystis sp. (strain%3B E%3D2e-34 pir:D83106%3B hypothetical protein PA4323 [imported] - Pseudomonas%3B E%3D3e-33 ddbj:BAB04451.1%3B (AP001509) BH0732~~unknown conserved protein in%3B E%3D9e-31 COG: slr2013%3B COG1721 Uncharacterized ACR%3B E%3D2e-35 PFAM: PF01882%3B Protein of unknown function DUF%3B E%3D5.3e-19 gene gene4855 http://www.ncbi.nlm.nih.gov/gene/?term=RB8651 RB8652 RB8652 RB8652 4609979 4610365 + hypothetical protein gene gene4856 http://www.ncbi.nlm.nih.gov/gene/?term=RB8652 RB8669 RB8669 RB8669 4614557 4614670 + hypothetical protein gene gene4859 http://www.ncbi.nlm.nih.gov/gene/?term=RB8669 RB867 RB867 RB867 460429 460731 - hypothetical protein gene gene469 http://www.ncbi.nlm.nih.gov/gene/?term=RB867 RB8670 RB8670 RB8670 4614842 4614985 + hypothetical protein gene gene4860 http://www.ncbi.nlm.nih.gov/gene/?term=RB8670 RB8672 RB8672 RB8672 4615354 4615710 - hypothetical protein gene gene4863 http://www.ncbi.nlm.nih.gov/gene/?term=RB8672 RB8674 RB8674 RB8674 4615595 4617571 + thioredoxin best DB hits: BLAST: pir:H71366%3B probable thioredoxin - syphilis spirochete ----- gb:%3B E%3D2e-11 gb:AAD00775.1%3B (U95250) thioredoxin [Treponema pallidum]%3B E%3D2e-11 ddbj:BAB06587.1%3B (AP001516) thioldisulfide interchange protein%3B E%3D7e-09 COG: TP0100%3B COG0526 Thiol-disulfide isomerase and thioredoxins%3B E%3D2e-12 XF2174%3B COG3118 Thioredoxin domain-containing protein%3B E%3D7e-07 XF1990%3B COG0526 Thiol-disulfide isomerase and thioredoxins%3B E%3D1e-06 PFAM: PF00085%3B Thioredoxin%3B E%3D0.34 gene gene4864 http://www.ncbi.nlm.nih.gov/gene/?term=RB8674 RB8677 RB8677 RB8677 4617669 4618556 - hypothetical protein best DB hits: BLAST: pir:S76850%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D0.56 gene gene4865 http://www.ncbi.nlm.nih.gov/gene/?term=RB8677 RB8679 RB8679 RB8679 4618580 4620013 - oxidoreductase best DB hits: BLAST: gb:AAF23289.1%3B AC016661_14 (AC016661) oxidoreductase%3B E%3D1e-52 gb:AAG19065.1%3B (AE005005) Vng0542c [Halobacterium sp. NRC-1]%3B E%3D2e-45 pir:C75327%3B oxidoreductase%2C FAD-binding - Deinococcus radiodurans%3B E%3D2e-41 COG: VNG0542C%3B COG1233 Phytoene dehydrogenase and related proteins%3B E%3D2e-46 PFAM: PF00070%3B Pyridine nucleotide-disulphide%3B E%3D0.041 PF01593%3B Flavin containing amine oxidase%3B E%3D2.5e-05 PF01494%3B FAD binding domain%3B E%3D0.0013 gene gene4866 http://www.ncbi.nlm.nih.gov/gene/?term=RB8679 RB8680 RB8680 RB8680 4620010 4621476 - cleavage and polyadenylation specifity factor-related protein best DB hits: BLAST: ddbj:BAA33615.1%3B (AB012956) unknown [Vibrio cholerae]%3B E%3D6e-99 pir:F82345%3B conserved hypothetical protein VC0264 [imported] -%3B E%3D9e-96 gb:AAD54657.1%3B AF090685_1 (AF090685) hypothetical protein [Vibrio%3B E%3D7e-67 COG: VC0264%3B COG1236 Predicted exonuclease of the beta-lactamase fold%3B E%3D9e-97 MJ1236%3B COG1782 Predicted metal-dependent RNase%2C consists of a%3B E%3D4e-39 MJ0162%3B COG1236 Predicted exonuclease of the beta-lactamase fold%3B E%3D1e-26 PFAM: PF00753%3B Metallo-beta-lactamase superfami%3B E%3D9.3e-07 gene gene4867 http://www.ncbi.nlm.nih.gov/gene/?term=RB8680 RB8681 RB8681 RB8681 4621513 4621959 + hypothetical protein gene gene4868 http://www.ncbi.nlm.nih.gov/gene/?term=RB8681 RB8683 RB8683 RB8683 4621902 4622102 + hypothetical protein gene gene4869 http://www.ncbi.nlm.nih.gov/gene/?term=RB8683 RB8684 RB8684 RB8684 4622113 4623192 + hypothetical protein best DB hits: BLAST: gb:AAG20046.1%3B (AE005084) Vng1839h [Halobacterium sp. NRC-1]%3B E%3D3e-46 embl:CAC11174.1%3B (AL445063) hypothetical protein [Thermoplasma%3B E%3D3e-40 pir:E72334%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D6e-29 COG: VNG1839H%3B COG3367 Uncharacterized ACR%3B E%3D3e-47 gene gene4870 http://www.ncbi.nlm.nih.gov/gene/?term=RB8684 RB8686 RB8686 ykfB ykfB 4623156 4624238 + chloromuconate cycloisomerase YkfB1 PMID: 2583528 best DB hits: BLAST: gb:AAG20045.1%3B (AE005084) chloromuconate cycloisomerase%3B YkfB1%3B E%3D3e-38 pir:H64881%3B hypothetical protein b1325 - Escherichia coli -----%3B E%3D1e-24 swissprot:P51981%3B YCJG_ECOLI HYPOTHETICAL 34.7 KD PROTEIN IN%3B E%3D8e-24 COG: VNG1837G%3B COG1441 O-succinylbenzoate synthase and related enzymes%3B E%3D3e-39 PFAM: PF02746%3B Mandelate racemase / muconate lacton%3B E%3D0.00038 PF01188%3B Mandelate racemase / muconate lacton%3B E%3D9.6e-23 gene gene4871 http://www.ncbi.nlm.nih.gov/gene/?term=RB8686 RB8687 RB8687 RB8687 4624297 4626705 + beta-lactamase best DB hits: BLAST: pir:A83422%3B hypothetical protein PA1797 [imported] - Pseudomonas%3B E%3D4e-34 pir:G75201%3B probable beta-lactamase (EC 3.5.2.6) PAB0087 -%3B E%3D3e-29 gb:AAF86053.1%3B AF210139_1 (AF210139) fmtA-like protein%3B E%3D4e-28 COG: PA1797%3B COG1680 Beta-lactamase class C and other penicillin binding%3B E%3D3e-35 ddpX%3B COG2173 D-alanyl-D-alanine dipeptidase%3B E%3D6e-16 Rv0399c%3B COG1680 Beta-lactamase class C and other penicillin binding%3B E%3D6e-14 PFAM: PF01427%3B D-ala-D-ala dipeptidase%3B E%3D3.1e-32 gene gene4872 http://www.ncbi.nlm.nih.gov/gene/?term=RB8687 RB8689 RB8689 RB8689 4626753 4626875 - hypothetical protein gene gene4873 http://www.ncbi.nlm.nih.gov/gene/?term=RB8689 RB869 RB869 RB869 460848 461063 + signal peptide gene gene470 http://www.ncbi.nlm.nih.gov/gene/?term=RB869 RB8690 RB8690 RB8690 4626859 4628703 - hypothetical protein best DB hits: PFAM: PF02774%3B Semialdehyde dehydrogenase%2C d%3B E%3D0.16 gene gene4874 http://www.ncbi.nlm.nih.gov/gene/?term=RB8690 RB8693 RB8693 RB8693 4628700 4629695 - ABC transporter ATP binding protein best DB hits: BLAST: gb:AAF81232.1%3B (AF263012) ABC transporter ATP binding protein%3B E%3D4e-31 pir:C72303%3B ABC transporter ATP-binding protein - Thermotoga%3B E%3D5e-29 pir:T36523%3B probable ABC-type transport system ATP-binding protein -%3B E%3D1e-28 COG: TM1028%3B COG1131 ABC-type multidrug transport system%2C ATPase%3B E%3D5e-30 PFAM: PF00005%3B ABC transporter%3B E%3D4.5e-39 gene gene4875 http://www.ncbi.nlm.nih.gov/gene/?term=RB8693 RB8695 RB8695 RB8695 4629692 4630087 - GntR family transcriptional regulator PMID: 7612925 best DB hits: BLAST: pir:G69999%3B transcriptional regulator GntR related protein ytrA -%3B E%3D7e-17 swissprot:P54590%3B YHCF_BACSU HYPOTHETICAL TRANSCRIPTIONAL%3B E%3D1e-11 pir:D72336%3B transcriptional regulator%2C GntR family - Thermotoga%3B E%3D5e-11 COG: BS_ytrA%3B COG1725 Predicted transcriptional regulators%3B E%3D7e-18 PA0268%3B COG1167 Transcriptional regulators containing a%3B E%3D1e-08 BH1940%3B COG1167 Transcriptional regulators containing a DNA-binding%3B E%3D1e-08 PFAM: PF01047%3B MarR family%3B E%3D0.01 PF00392%3B Bacterial regulatory proteins%2C gntR%3B E%3D5.7e-17 gene gene4876 http://www.ncbi.nlm.nih.gov/gene/?term=RB8695 RB8697 RB8697 RB8697 4630111 4630281 - hypothetical protein gene gene4877 http://www.ncbi.nlm.nih.gov/gene/?term=RB8697 RB87 RB87 RB87 32765 34051 + signal peptide gene gene49 http://www.ncbi.nlm.nih.gov/gene/?term=RB87 RB870 RB870 RB870 461164 462450 + signal peptide best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene471 http://www.ncbi.nlm.nih.gov/gene/?term=RB870 RB8700 RB8700 RB8700 4630224 4630400 + hypothetical protein gene gene4878 http://www.ncbi.nlm.nih.gov/gene/?term=RB8700 RB8701 RB8701 sigH sigH 4630397 4630999 + sigma factor SigH PMID: 99328972 best DB hits: BLAST: gb:AAD41810.1%3B AF144091_4 (AF144091) sigma factor SigH%3B E%3D7e-06 pir:H75550%3B RNA polymerase sigma-E factor - Deinococcus radiodurans%3B E%3D3e-05 swissprot:O05843%3B RPOE_MYCTU RNA POLYMERASE SIGMA-E FACTOR%3B E%3D8e-05 COG: DR0180%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D3e-06 PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D0.0092 gene gene4879 http://www.ncbi.nlm.nih.gov/gene/?term=RB8701 RB8703 RB8703 RB8703 4630992 4631468 + hypothetical protein gene gene4880 http://www.ncbi.nlm.nih.gov/gene/?term=RB8703 RB8704 RB8704 RB8704 4631375 4632673 + hypothetical protein gene gene4881 http://www.ncbi.nlm.nih.gov/gene/?term=RB8704 RB8707 RB8707 pilC pilC 4632670 4633758 + type IV pilin biogenesis protein PilC PMID: 95369727 PMID: 1971619 best DB hits: BLAST: pir:A82078%3B type IV pilin biogenesis protein PilC VC2425 [imported]%3B E%3D8e-09 gb:AAB65806.1%3B (U17138) FimO [Dichelobacter nodosus]%3B E%3D3e-06 swissprot:P22609%3B PILC_PSEAE FIMBRIAL ASSEMBLY PROTEIN PILC%3B E%3D2e-05 COG: VC2425%3B COG1459 General secretory pathway protein F%3B E%3D7e-10 PFAM: PF00482%3B Bacterial type II secretion syst%3B E%3D8.1e-08 gene gene4882 http://www.ncbi.nlm.nih.gov/gene/?term=RB8707 RB871 RB871 RB871 462534 463841 - hypothetical protein PMID: 9537320 best DB hits: BLAST: pir:B70374%3B conserved hypothetical protein aq_854 - Aquifex aeolicus%3B E%3D0.002 COG: aq_854%3B COG0457 TPR-repeat-containing proteins%3B E%3D2e-04 PFAM: PF00515%3B TPR Domain%3B E%3D0.0063 gene gene472 http://www.ncbi.nlm.nih.gov/gene/?term=RB871 RB8711 RB8711 tapC tapC 4633755 4634828 + type IV pilus assembly protein TapC PMID: 8820654 best DB hits: BLAST: gb:AAC23568.1%3B (AF059249) type IV pilus assembly protein TapC%3B E%3D2e-04 swissprot:P45793%3B TAPC_AERHY TYPE IV PILUS ASSEMBLY PROTEIN TAPC%3B E%3D5e-04 pir:S77585%3B pilus assembly protein pilG - Neisseria gonorrhoeae%3B E%3D0.036 PFAM: PF00482%3B Bacterial type II secretion system%3B E%3D0.0045 gene gene4883 http://www.ncbi.nlm.nih.gov/gene/?term=RB8711 RB8713 RB8713 RB8713 4634825 4635253 + hypothetical protein gene gene4884 http://www.ncbi.nlm.nih.gov/gene/?term=RB8713 RB8715 RB8715 RB8715 4635250 4635789 + hypothetical protein gene gene4885 http://www.ncbi.nlm.nih.gov/gene/?term=RB8715 RB8717 RB8717 RB8717 4635786 4636415 + hypothetical protein gene gene4886 http://www.ncbi.nlm.nih.gov/gene/?term=RB8717 RB8718 RB8718 RB8718 4636447 4637355 + signal peptide best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene4887 http://www.ncbi.nlm.nih.gov/gene/?term=RB8718 RB8722 RB8722 RB8722 4637352 4638119 + hypothetical protein gene gene4888 http://www.ncbi.nlm.nih.gov/gene/?term=RB8722 RB8723 RB8723 RB8723 4638077 4638301 + hypothetical protein gene gene4889 http://www.ncbi.nlm.nih.gov/gene/?term=RB8723 RB8725 RB8725 rpmG rpmG 4638301 4638465 + 50S ribosomal protein L33 PMID: 9403685 best DB hits: BLAST: swissprot:O51357%3B RL33_BORBU 50S RIBOSOMAL PROTEIN L33 -----%3B E%3D0.32 PFAM: PF00471%3B Ribosomal protein L33%3B E%3D0.00011 gene gene4890 http://www.ncbi.nlm.nih.gov/gene/?term=RB8725 RB8726 RB8726 recJ recJ 4638505 4640304 + single-strand DNA-specific exonuclease PMID: 1987126 PMID: 2649886 best DB hits: BLAST: ddbj:BAB04959.1%3B (AP001511) single-strand DNA-specific%3B E%3D5e-91 pir:H69980%3B single-strand DNA-specific exonuclease homolog yrvE -%3B E%3D3e-88 pir:D72062%3B single-stranded-DNA-specific exonuclease RecJ CP0187%3B E%3D3e-73 COG: BH1240_1%3B COG0608 Single-stranded DNA-specific exonuclease%3B E%3D5e-92 PFAM: PF01368%3B DHH family%3B E%3D3e-41 PF02272%3B DHHA1 domain%3B E%3D0.00061 gene gene4891 http://www.ncbi.nlm.nih.gov/gene/?term=RB8726 RB8728 RB8728 RB8728 4640698 4641507 + D-mannonate oxidoreductase Converts D-mannonate to D-mannuronate gene gene4892 http://www.ncbi.nlm.nih.gov/gene/?term=RB8728 RB873 RB873 RB873 463836 464060 + hypothetical protein gene gene473 http://www.ncbi.nlm.nih.gov/gene/?term=RB873 RB8731 RB8731 kdgK kdgK 4641652 4642728 + 2-keto-3-deoxygluconate kinase PMID: 8157608 best DB hits: BLAST: pir:G72422%3B 2-keto-3-deoxygluconate kinase - Thermotoga maritima%3B E%3D1e-15 embl:CAB61818.1%3B (AL133236) sugar kinase [Streptomyces%3B E%3D2e-08 pir:D83362%3B probable 2-ketogluconate kinase PA2261 [imported] -%3B E%3D2e-06 COG: TM0067%3B COG0524 Sugar kinases%2C ribokinase%3B E%3D1e-16 PFAM: PF00294%3B pfkB family carbohydrate kinase%3B E%3D3.8e-10 gene gene4893 http://www.ncbi.nlm.nih.gov/gene/?term=RB8731 RB8734 RB8734 RB8734 4642725 4643033 - hypothetical protein gene gene4894 http://www.ncbi.nlm.nih.gov/gene/?term=RB8734 RB8736 RB8736 RB8736 4643049 4643357 - hypothetical protein gene gene4895 http://www.ncbi.nlm.nih.gov/gene/?term=RB8736 RB8738 RB8738 RB8738 4643329 4643880 - hypothetical protein gene gene4896 http://www.ncbi.nlm.nih.gov/gene/?term=RB8738 RB8739 RB8739 RB8739 4643832 4644191 + hypothetical protein gene gene4897 http://www.ncbi.nlm.nih.gov/gene/?term=RB8739 RB874 RB874 RB874 464081 465733 + hypothetical protein PMID: 11481431 gene gene474 http://www.ncbi.nlm.nih.gov/gene/?term=RB874 RB8740 RB8740 RB8740 4644150 4644689 - hypothetical protein gene gene4898 http://www.ncbi.nlm.nih.gov/gene/?term=RB8740 RB8741 RB8741 aroH aroH 4644447 4644920 + chorismate mutase PMID: 2105742 PMID: 8046752 best DB hits: BLAST: ddbj:BAB05377.1%3B (AP001512) chorismate mutase [Bacillus%3B E%3D6e-26 gb:AAD33790.1%3B AF139534_1 (AF139534) chorismate mutase [Bacillus%3B E%3D5e-25 swissprot:P19080%3B CHMU_BACSU CHORISMATE MUTASE (CM) ----- pir:%3B E%3D1e-22 gene gene4899 http://www.ncbi.nlm.nih.gov/gene/?term=RB8741 RB8742 RB8742 RB8742 4644874 4645908 + hypothetical protein gene gene4900 http://www.ncbi.nlm.nih.gov/gene/?term=RB8742 RB8745 RB8745 RB8745 4645847 4647718 + nitrogen fixation protein anfA (sigma-54 dependendent transcriptional regulator PMID: 2722750 best DB hits: BLAST: swissprot:P12626%3B ANFA_AZOVI NITROGEN FIXATION PROTEIN ANFA%3B E%3D1e-64 pir:A48291%3B ornithine decarboxylase inhibitor - Escherichia coli%3B E%3D7e-61 swissprot:Q06065%3B ATOC_ECOLI ACETOACETATE METABOLISM REGULATORY%3B E%3D7e-61 COG: atoC%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D7e-62 ygeV_3%3B COG1221 NtrC family transcriptional regulators%2C ATPase%3B E%3D3e-61 TP0519%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D8e-60 PFAM: PF00498%3B FHA domain%3B E%3D1.4e-16 PF00158%3B Sigma-54 interaction domain%3B E%3D1.6e-129 PF02001%3B Protein of unknown function DUF134%3B E%3D0.73 gene gene4901 http://www.ncbi.nlm.nih.gov/gene/?term=RB8745 RB8746 RB8746 RB8746 4647715 4648155 + hypothetical protein gene gene4902 http://www.ncbi.nlm.nih.gov/gene/?term=RB8746 RB8747 RB8747 dfp dfp 4648152 4648808 + flavoprotein best DB hits: BLAST: ddbj:BAB06229.1%3B (AP001515) flavoprotein [Bacillus halodurans]%3B E%3D2e-26 swissprot:P44953%3B DFP_HAEIN DNAPANTOTHENATE METABOLISM%3B E%3D2e-26 pir:B82982%3B DNApantothenate metabolism flavoprotein PA5320%3B E%3D5e-25 COG: BH2510%3B COG0452 Flavoprotein involved in pantothenate metabolism%3B E%3D2e-27 gene gene4903 http://www.ncbi.nlm.nih.gov/gene/?term=RB8747 RB8748 RB8748 pyrD pyrD 4648815 4649732 + dihydroorotate dehydrogenase PMID: 1709162 PMID: 10545205 best DB hits: BLAST: ddbj:BAB06253.1%3B (AP001515) dihydroorotate dehydrogenase%3B E%3D6e-68 swissprot:P25996%3B PYRD_BACSU DIHYDROOROTATE DEHYDROGENASE%2C%3B E%3D3e-67 swissprot:P46539%3B PYRD_BACCL DIHYDROOROTATE DEHYDROGENASE%2C%3B E%3D2e-65 COG: BH2534%3B COG0167 Dihydroorotate dehydrogenase%3B E%3D6e-69 PFAM: PF00977%3B Histidine biosynthesis protein%3B E%3D0.004 PF01180%3B Dihydroorotate dehydrogenase%3B E%3D4.3e-82 gene gene4904 http://www.ncbi.nlm.nih.gov/gene/?term=RB8748 RB8749 RB8749 RB8749 4649739 4649927 - hypothetical protein gene gene4905 http://www.ncbi.nlm.nih.gov/gene/?term=RB8749 RB8750 RB8750 RB8750 4649932 4651029 - signal peptide gene gene4906 http://www.ncbi.nlm.nih.gov/gene/?term=RB8750 RB8752 RB8752 RB8752 4651227 4652345 - hypothetical protein gene gene4907 http://www.ncbi.nlm.nih.gov/gene/?term=RB8752 RB8754 RB8754 batD batD 4652356 4655331 - hypothetical protein PMID: 99232513 best DB hits: BLAST: gb:AAD30861.1%3B AF116251_4 (AF116251) BatD [Bacteroides fragilis]%3B E%3D2e-10 gb:AAD30862.1%3B AF116251_5 (AF116251) BatE [Bacteroides fragilis]%3B E%3D4e-04 embl:CAA76834.1%3B (Y17720) SPINDLY protein [Petunia x hybrida]%3B E%3D0.59 PFAM: PF00515%3B TPR Domain%3B E%3D4e-07 gene gene4908 http://www.ncbi.nlm.nih.gov/gene/?term=RB8754 RB8759 RB8759 batB batB 4655325 4657568 - BatB PMID: 99232513 best DB hits: BLAST: gb:AAD30859.1%3B AF116251_2 (AF116251) BatB [Bacteroides fragilis]%3B E%3D5e-25 gb:AAD30858.1%3B AF116251_1 (AF116251) BatA [Bacteroides fragilis]%3B E%3D8e-15 pir:E70121%3B hypothetical protein BB0173 - Lyme disease spirochete%3B E%3D1e-09 COG: BB0173%3B COG3035 Uncharacterized BCR%3B E%3D1e-10 yfbK%3B COG2304 Protein containing von Willebrand factor (vWF) type A%3B E%3D0.003 APE0605%3B COG3035 Uncharacterized BCR%3B E%3D0.006 PFAM: PF00092%3B von Willebrand factor type A domain%3B E%3D6e-05 gene gene4909 http://www.ncbi.nlm.nih.gov/gene/?term=RB8759 RB8763 RB8763 batA batA 4657463 4658536 - BatA PMID: 99232513 best DB hits: BLAST: gb:AAD30858.1%3B AF116251_1 (AF116251) BatA [Bacteroides fragilis]%3B E%3D3e-38 pir:E82493%3B conserved hypothetical protein VCA0172 [imported] -%3B E%3D8e-29 pir:B83262%3B hypothetical protein PA3073 [imported] - Pseudomonas%3B E%3D4e-23 COG: VCA0172%3B COG3035 Uncharacterized BCR%3B E%3D8e-30 PFAM: PF00092%3B von Willebrand factor type A do%3B E%3D0.00041 gene gene4910 http://www.ncbi.nlm.nih.gov/gene/?term=RB8763 RB8764 RB8764 RB8764 4658533 4659579 - hypothetical protein gene gene4911 http://www.ncbi.nlm.nih.gov/gene/?term=RB8764 RB8767 RB8767 RB8767 4659576 4660451 - hypothetical protein best DB hits: BLAST: pir:G70121%3B conserved hypothetical protein BB0175 - Lyme disease%3B E%3D7e-30 swissprot:P71761%3B YE80_MYCTU HYPOTHETICAL 34.3 KDA PROTEIN RV1480%3B E%3D7e-27 pir:H83261%3B hypothetical protein PA3071 [imported] - Pseudomonas%3B E%3D3e-26 COG: BB0175%3B COG1721 Uncharacterized ACR%3B E%3D7e-31 PFAM: PF01882%3B Protein of unknown function DUF58%3B E%3D4.2e-38 gene gene4912 http://www.ncbi.nlm.nih.gov/gene/?term=RB8767 RB8768 RB8768 RB8768 4660455 4661498 - moxR-type regulator best DB hits: BLAST: pir:G83261%3B conserved hypothetical protein PA3070 [imported] -%3B E%3D9e-66 pir:H82493%3B MoxR-related protein VCA0175 [imported] - Vibrio%3B E%3D2e-65 pir:B70874%3B probable moxR protein - Mycobacterium tuberculosis%3B E%3D4e-63 COG: PA3070%3B COG0714 MoxR-like ATPases%3B E%3D9e-67 PFAM: PF01078%3B Magnesium chelatase%2C subunit Chl%3B E%3D1e-06 gene gene4913 http://www.ncbi.nlm.nih.gov/gene/?term=RB8768 RB8770 RB8770 RB8770 4661775 4663367 - hypothetical protein best DB hits: BLAST: gb:AAG20870.1%3B (AE005155) Vng6208c [Halobacterium sp. NRC-1]%3B E%3D7e-05 pir:E75514%3B B-cell receptor associated protein-related protein -%3B E%3D0.016 COG: DR0482%3B COG0330 Membrane protease subunits%2C stomatin/prohibitin%3B E%3D0.002 gene gene4914 http://www.ncbi.nlm.nih.gov/gene/?term=RB8770 RB8773 RB8773 RB8773 4663364 4665094 - hypothetical protein best DB hits: BLAST: gb:AAG20870.1%3B (AE005155) Vng6208c [Halobacterium sp. NRC-1]%3B E%3D3e-04 pir:E75514%3B B-cell receptor associated protein-related protein -%3B E%3D8e-04 pir:S75156%3B hypothetical protein slr1768 - Synechocystis sp. (strain%3B E%3D8e-04 COG: DR0482%3B COG0330 Membrane protease subunits%2C stomatin/prohibitin%3B E%3D8e-05 gene gene4915 http://www.ncbi.nlm.nih.gov/gene/?term=RB8773 RB8774 RB8774 RB8774 4665122 4665250 - hypothetical protein gene gene4916 http://www.ncbi.nlm.nih.gov/gene/?term=RB8774 RB8775 RB8775 RB8775 4665252 4665497 - hypothetical protein gene gene4917 http://www.ncbi.nlm.nih.gov/gene/?term=RB8775 RB8776 RB8776 RB8776 4665512 4665772 + hypothetical protein gene gene4918 http://www.ncbi.nlm.nih.gov/gene/?term=RB8776 RB8777 RB8777 rho rho 4665826 4667160 + transcription termination factor Rho An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes gene gene4919 http://www.ncbi.nlm.nih.gov/gene/?term=RB8777 RB8779 RB8779 sdaA sdaA 4667344 4668846 + L-serine dehydratase PMID: 2504697 best DB hits: BLAST: pir:B83341%3B L-serine dehydratase PA2443 [imported] - Pseudomonas%3B E%3D1e-141 pir:D82974%3B L-serine dehydratase PA5379 [imported] - Pseudomonas%3B E%3D1e-127 swissprot:O86564%3B SDHL_STRCO L-SERINE DEHYDRATASE (L-SERINE%3B E%3D1e-126 COG: PA2443%3B COG1760 L-serine deaminase%3B E%3D1e-142 gene gene4921 http://www.ncbi.nlm.nih.gov/gene/?term=RB8779 RB878 RB878 mtrA mtrA 465702 467144 - c-type cytochrome precursor best DB hits: BLAST: gb:AAD05531.1%3B (AF083240) c-type cytochrome precursor [Shewanella%3B E%3D0.024 gb:AAD05534.1%3B (AF083240) deca-heme c-type cytochrome [Shewanella%3B E%3D0.039 gene gene475 http://www.ncbi.nlm.nih.gov/gene/?term=RB878 RB8780 RB8780 RB8780 4668909 4669028 - hypothetical protein gene gene4922 http://www.ncbi.nlm.nih.gov/gene/?term=RB8780 RB8781 RB8781 RB8781 4669001 4670116 + NADH-dependent oxidoreductase best DB hits: BLAST: embl:CAC14937.1%3B (AL449216) oxidoreductase [Streptomyces%3B E%3D8e-20 swissprot:P49305%3B YMO1_RHIME HYPOTHETICAL 36.4 KD PROTEIN IN%3B E%3D1e-12 ddbj:BAB04429.1%3B (AP001509) BH0710~~unknown conserved protein%3B E%3D3e-11 COG: BH0710%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D3e-12 PFAM: PF01408%3B Oxidoreductase%2C NAD-bindi%3B E%3D2.3e-26 gene gene4923 http://www.ncbi.nlm.nih.gov/gene/?term=RB8781 RB8783 RB8783 RB8783 4670203 4671168 - hypothetical protein best DB hits: BLAST: pir:T48821%3B hypothetical protein 68B2.50 [imported] - Neurospora%3B E%3D7e-21 pir:T37061%3B probable secreted protein - Streptomyces coelicolor%3B E%3D1e-05 pir:S71925%3B angel protein - fruit fly (Drosophila melanogaster)%3B E%3D0.001 gene gene4924 http://www.ncbi.nlm.nih.gov/gene/?term=RB8783 RB8785 RB8785 fucI fucI 4671165 4672793 - L-fucose isomerase best DB hits: BLAST: pir:H72393%3B hypothetical protein TM0307 - Thermotoga maritima%3B E%3D3e-12 COG: TM0307%3B COG2407 L-fucose isomerase and related proteins%3B E%3D3e-13 gene gene4925 http://www.ncbi.nlm.nih.gov/gene/?term=RB8785 RB8788 RB8788 araB araB 4672814 4674508 - ribulokinase catalyzes the phosphorylation of ribulose to ribulose 5-phosphate gene gene4926 http://www.ncbi.nlm.nih.gov/gene/?term=RB8788 RB8789 RB8789 RB8789 4674623 4677007 - hypothetical protein best DB hits: BLAST: pir:T35497%3B hypothetical protein SC6E10.10 - Streptomyces coelicolor%3B E%3D0.14 gb:AAG54838.1%3B AE005229_1 (AE005229) RTX family exoprotein%3B E%3D0.87 gene gene4927 http://www.ncbi.nlm.nih.gov/gene/?term=RB8789 RB879 RB879 RB879 467102 467422 - hypothetical protein gene gene476 http://www.ncbi.nlm.nih.gov/gene/?term=RB879 RB8792 RB8792 yidR yidR 4677023 4678378 - hypothetical protein best DB hits: BLAST: swissprot:P31455%3B YIDR_ECOLI HYPOTHETICAL 46.4 KD PROTEIN IN%3B E%3D5e-86 gb:AAA62041.1%3B (L10328) f416 [Escherichia coli]%3B E%3D3e-85 gb:AAG58891.1%3B AE005600_9 (AE005600) orf%2C hypothetical protein%3B E%3D3e-85 COG: RP302%3B COG0823 Periplasmic component of the Tol biopolymer transport%3B E%3D0.004 PFAM: PF02039%3B Adrenomedullin%3B E%3D0.72 gene gene4928 http://www.ncbi.nlm.nih.gov/gene/?term=RB8792 RB8796 RB8796 RB8796 4678582 4679277 + GntR family transcriptional regulator best DB hits: BLAST: pir:T36491%3B probable gntR-family transcriptional regulator -%3B E%3D1e-12 pir:T34672%3B probable gntR family transcriptional regulator -%3B E%3D2e-10 pir:B83545%3B probable transcriptional regulator PA0797 [imported] -%3B E%3D3e-10 COG: PA0797%3B COG1802 Transcriptional regulators%3B E%3D3e-11 DR1905%3B COG2186 Transcriptional regulators%3B E%3D2e-07 VC1335%3B COG1802 Transcriptional regulators%3B E%3D2e-07 PFAM: PF00392%3B Bacterial regulatory proteins%2C gntR%3B E%3D3.7e-09 gene gene4929 http://www.ncbi.nlm.nih.gov/gene/?term=RB8796 RB8797 RB8797 RB8797 4679244 4680872 - sodium iodide symporter PMID: 9329364 best DB hits: BLAST: pir:S75887%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D3e-31 embl:CAC16517.1%3B (AL450223) integral membrane transport%3B E%3D1e-27 gb:AAF57192.1%3B (AE003779) CG2187 gene product [Drosophila%3B E%3D6e-27 COG: sll1087%3B COG0591 Na+/proline%2C Na+/panthothenate symporters and%3B E%3D3e-32 yidK%3B COG0591 Na+/proline%2C Na+/panthothenate symporters and related%3B E%3D3e-06 PAB0609%3B COG0591 Na+/proline%2C Na+/panthothenate symporters and%3B E%3D1e-04 PFAM: PF00474%3B Sodium:solute symporter family%3B E%3D1.5e-11 gene gene4930 http://www.ncbi.nlm.nih.gov/gene/?term=RB8797 RB8798 RB8798 dapA dapA 4680869 4681828 - dihydrodipicolinate synthase DapA PMID: 8098035 best DB hits: BLAST: gb:AAG18989.1%3B (AE004999) dihydrodipicolinate synthase%3B DapA%3B E%3D2e-23 swissprot:P75682%3B YAGE_ECOLI HYPOTHETICAL 33.3 KD PROTEIN IN%3B E%3D6e-19 pir:S56523%3B dihydrodipicolinate synthase homolog yjhH - Escherichia%3B E%3D1e-18 COG: VNG0444G%3B COG0329 Dihydrodipicolinate synthetase/N-acetylneuraminate%3B E%3D2e-24 PFAM: PF00701%3B Dihydrodipicolinate synthetase famil%3B E%3D1.6e-46 gene gene4931 http://www.ncbi.nlm.nih.gov/gene/?term=RB8798 RB8799 RB8799 RB8799 4681977 4683413 - NADH-dependent dyhydrogenase best DB hits: BLAST: ddbj:BAB04967.1%3B (AP001511) NADH-dependent dyhydrogenase%3B E%3D6e-11 ddbj:BAB05884.1%3B (AP001514) BH2165~~unknown conserved protein%3B E%3D7e-11 pir:T34927%3B probable oxidoreductase - Streptomyces coelicolor%3B E%3D8e-11 COG: BH1248%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D6e-12 PFAM: PF01408%3B Oxidoreductase%2C NAD-bin%3B E%3D9.9e-20 gene gene4932 http://www.ncbi.nlm.nih.gov/gene/?term=RB8799 RB88 RB88 phoD phoD 34254 35666 + alkaline phosphatase PMID: 8760916 best DB hits: BLAST: embl:CAC18240.1%3B (AL451018) conserved hypothetical protein%3B E%3D2e-12 ddbj:BAB10478.1%3B (AB016888) gene_id:MDH9.6~~similar to unknown%3B E%3D2e-12 embl:CAB92825.1%3B (AL356892) hypothetical protein [Streptomyces%3B E%3D6e-05 gene gene50 http://www.ncbi.nlm.nih.gov/gene/?term=RB88 RB880 RB880 RB880 467399 467755 + signal peptide gene gene477 http://www.ncbi.nlm.nih.gov/gene/?term=RB880 RB8803 RB8803 RB8803 4683497 4684438 - hypothetical protein gene gene4933 http://www.ncbi.nlm.nih.gov/gene/?term=RB8803 RB8806 RB8806 RB8806 4684515 4685042 + 6-pyruvoyl tetrahydrobiopterin synthase best DB hits: BLAST: embl:CAC12079.1%3B (AL445066) conserved hypothetical protein%3B E%3D2e-11 swissprot:Q58668%3B YC72_METJA HYPOTHETICAL PROTEIN MJ1272 -----%3B E%3D1e-10 swissprot:O27296%3B YC28_METTH HYPOTHETICAL PROTEIN MTH1228 -----%3B E%3D2e-10 COG: Ta0950%3B COG0720 6-pyruvoyl-tetrahydropterin synthase%3B E%3D1e-12 PFAM: PF01242%3B 6-pyruvoyl tetrahydropterin synthas%3B E%3D0.0016 PF01945%3B Domain of unknown function%3B E%3D0.87 gene gene4934 http://www.ncbi.nlm.nih.gov/gene/?term=RB8806 RB8807 RB8807 RB8807 4685078 4686313 - hypothetical protein best DB hits: BLAST: ddbj:BAB05084.1%3B (AP001511) BH1365~~unknown conserved protein in%3B E%3D1e-17 pir:G81831%3B probable integral membrane protein NMA2020 [imported] -%3B E%3D1e-16 pir:F81195%3B conserved hypothetical protein NMB0465 [imported] -%3B E%3D1e-16 COG: BH1365%3B COG2928 Uncharacterized BCR%3B E%3D1e-18 gene gene4935 http://www.ncbi.nlm.nih.gov/gene/?term=RB8807 RB8812 RB8812 RB8812 4686310 4687218 - phosphoribosyl transferase best DB hits: BLAST: pir:D83584%3B probable phosphoribosyl transferase PA0489 [imported] -%3B E%3D1e-05 gb:AAD29646.1%3B AF124757_6 (AF124757) competence protein F%3B E%3D2e-05 pir:H82042%3B ComF-related protein VC2719 [imported] - Vibrio cholerae%3B E%3D0.50 COG: PA0489%3B COG1040 Predicted amidophosphoribosyltransferases%3B E%3D1e-06 PFAM: PF00156%3B Phosphoribosyl transferase domai%3B E%3D0.00076 gene gene4936 http://www.ncbi.nlm.nih.gov/gene/?term=RB8812 RB8813 RB8813 RB8813 4687305 4687445 + hypothetical protein gene gene4937 http://www.ncbi.nlm.nih.gov/gene/?term=RB8813 RB8814 RB8814 RB8814 4687433 4687669 + hypothetical protein gene gene4938 http://www.ncbi.nlm.nih.gov/gene/?term=RB8814 RB8815 RB8815 RB8815 4687740 4687955 - hypothetical protein gene gene4939 http://www.ncbi.nlm.nih.gov/gene/?term=RB8815 RB8816 RB8816 sigW sigW 4688029 4688784 + RNA polymerase sigma factor sigW PMID: 8432708 PMID: 7961421 best DB hits: BLAST: swissprot:Q45585%3B SIGW_BACSU RNA POLYMERASE SIGMA FACTOR SIGW%3B E%3D1e-15 ddbj:BAB03982.1%3B (AP001507) RNA polymerase ECF-type sigma factor%3B E%3D5e-13 gb:AAF18265.1%3B U22895_1 (U22895) alternative sigma factor AlgU%3B E%3D3e-10 COG: BS_sigW%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D1e-16 PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D2.9e-11 gene gene4940 http://www.ncbi.nlm.nih.gov/gene/?term=RB8816 RB8818 RB8818 RB8818 4688839 4689021 - hypothetical protein gene gene4941 http://www.ncbi.nlm.nih.gov/gene/?term=RB8818 RB8819 RB8819 RB8819 4689011 4689157 - hypothetical protein gene gene4942 http://www.ncbi.nlm.nih.gov/gene/?term=RB8819 RB8820 RB8820 RB8820 4689239 4690069 + sensory transduction histidine kinase best DB hits: BLAST: pir:S75136%3B sensory transduction histidine kinase slr2104 -%3B E%3D5e-05 swissprot:P39663%3B SPHR_SYNP7 ALKALINE PHOSPHATASE SYNTHESIS%3B E%3D8e-05 ddbj:BAB09274.1%3B (AB011485) histidine kinase-like protein%3B E%3D1e-04 COG: slr2104_4%3B COG0784 CheY-like receiver domains%3B E%3D4e-06 VC0719%3B COG0745 Response regulators consisting of a CheY-like%3B E%3D2e-05 slr1042%3B COG0784 CheY-like receiver domains%3B E%3D5e-05 PFAM: PF02599%3B Carbon storage regulator%3B E%3D0.2 PF00072%3B Response regulator receiver d%3B E%3D1.7e-10 gene gene4943 http://www.ncbi.nlm.nih.gov/gene/?term=RB8820 RB8821 RB8821 RB8821 4690159 4690344 + hypothetical protein gene gene4944 http://www.ncbi.nlm.nih.gov/gene/?term=RB8821 RB8823 RB8823 xynE xynE 4690285 4691280 - endo-1%2C4-beta-xylanase 1 precursor PMID: 3139632 PMID: 7664125 best DB hits: BLAST: swissprot:Q10614%3B YC88_MYCTU HYPOTHETICAL 49.6 KDA PROTEIN RV1288%3B E%3D2e-08 pir:S58235%3B endo-1%2C4-beta-xylanase (EC 3.2.1.8) 1 precursor -%3B E%3D2e-07 embl:CAB93667.1%3B (AJ272430) endoxylanase [Ruminococcus%3B E%3D4e-07 COG: yieL%3B COG2382 Enterochelin esterase and related enzymes%3B E%3D0.001 gene gene4945 http://www.ncbi.nlm.nih.gov/gene/?term=RB8823 RB8824 RB8824 RB8824 4691280 4691843 + cytosine deaminase PMID: 9000374 best DB hits: BLAST: swissprot:P78594%3B FCA1_CANAL CYTOSINE DEAMINASE (CYTOSINE%3B E%3D9e-32 gb:AAC13409.1%3B (U55193) cytosine deaminase [Saccharomyces%3B E%3D8e-30 gb:AAG33626.1%3B AF312392_1 (AF312392) cytosine deaminase-uracil%3B E%3D8e-30 COG: YPR062w%3B COG0590 Cytosine/adenosine deaminases%3B E%3D8e-31 PFAM: PF00383%3B Cytidine and deoxycytidylate de%3B E%3D6.1e-24 gene gene4946 http://www.ncbi.nlm.nih.gov/gene/?term=RB8824 RB8825 RB8825 RB8825 4691834 4692952 - transmembrane protein PMID: 8445726 best DB hits: BLAST: ddbj:BAA92557.1%3B (AB037740) KIAA1319 protein [Homo sapiens]%3B E%3D0.030 gb:AAF74498.1%3B AF263462_1 (AF263462) cingulin [Homo sapiens]%3B E%3D0.030 embl:CAC14945.1%3B (AL132825) dJ756N5.1 (Myosin heavy chain protein%3B E%3D0.047 gene gene4947 http://www.ncbi.nlm.nih.gov/gene/?term=RB8825 RB8827 RB8827 RB8827 4693062 4694819 - ABC transporter best DB hits: BLAST: pir:H69086%3B ABC transporter - Methanobacterium thermoautotrophicum%3B E%3D3e-56 swissprot:Q46189%3B YHG1_CLOPA HYPOTHETICAL PROTEIN IN HYDROGENASE 1%3B E%3D3e-52 ddbj:BAB06427.1%3B (AP001516) ABC transporter [Bacillus halodurans]%3B E%3D3e-51 COG: MTH1645%3B COG0661 Predicted unusual protein kinase%3B E%3D3e-57 gene gene4948 http://www.ncbi.nlm.nih.gov/gene/?term=RB8827 RB8828 RB8828 RB8828 4694777 4696435 + amino-acid ABC transporter permease Y4TF PMID: 8590279 best DB hits: BLAST: swissprot:P55660%3B Y4TF_RHISN PROBABLE AMINO-ACID ABC TRANSPORTER%3B E%3D0.095 gene gene4949 http://www.ncbi.nlm.nih.gov/gene/?term=RB8828 RB883 RB883 RB883 467780 468271 + hypothetical protein gene gene478 http://www.ncbi.nlm.nih.gov/gene/?term=RB883 RB8833 RB8833 RB8833 4696475 4697428 + hypothetical protein best DB hits: BLAST: embl:CAA86969.1%3B (Z46881) unknown [Saccharomyces cerevisiae]%3B E%3D0.22 PFAM: PF02535%3B ZIP Zinc transporter%3B E%3D0.23 gene gene4950 http://www.ncbi.nlm.nih.gov/gene/?term=RB8833 RB8834 RB8834 czcD czcD 4697452 4698447 + cation efflux system protein PMID: 2678100 best DB hits: BLAST: pir:G72363%3B cation efflux system protein - Thermotoga maritima%3B E%3D4e-37 pir:H71078%3B probable cation efflux system protein czcD - Pyrococcus%3B E%3D4e-37 pir:C83595%3B probable cation efflux system protein PA0397 [imported]%3B E%3D9e-37 COG: TM0538%3B COG1230 Co/Zn/Cd efflux system component%3B E%3D4e-38 Rv2025c%3B COG0053 Predicted Co/Zn/Cd cation transporters%3B E%3D2e-10 PA1297%3B COG1230 Co/Zn/Cd efflux system component%3B E%3D4e-10 PFAM: PF01545%3B Cation efflux family%3B E%3D1.7e-65 gene gene4951 http://www.ncbi.nlm.nih.gov/gene/?term=RB8834 RB8835 RB8835 RB8835 4698524 4700386 + secreted alkaline phosphatase (fragment) best DB hits: BLAST: embl:CAB99170.1%3B (AL390188) secreted alkaline%3B E%3D0.003 embl:CAC18240.1%3B (AL451018) conserved hypothetical protein%3B E%3D0.004 ddbj:BAA06483.1%3B (D30808) unknown [Bacillus subtilis]%3B E%3D0.10 PFAM: PF02908%3B Purple acid phosphatase%2C N-term%3B E%3D0.89 PF00041%3B Fibronectin type III domain%3B E%3D0.42 gene gene4952 http://www.ncbi.nlm.nih.gov/gene/?term=RB8835 RB8838 RB8838 RB8838 4700391 4701458 - nucleotide pyrophosphatase-like protein best DB hits: BLAST: pir:T09933%3B nucleotide pyrophosphatase homolog T16L4.210 -%3B E%3D5e-04 pir:T33724%3B hypothetical protein - Zymomonas mobilis ----- gb:%3B E%3D0.001 pir:B82537%3B phosphodiesterase-nucleotide pyrophosphatase precursor%3B E%3D0.019 PFAM: PF01676%3B Metalloenzyme superfamily%3B E%3D0.0082 gene gene4953 http://www.ncbi.nlm.nih.gov/gene/?term=RB8838 RB8840 RB8840 RB8840 4701445 4701729 + acylphosphatase PMID: 9395090 best DB hits: BLAST: pir:G72240%3B hypothetical protein TM1564 - Thermotoga maritima%3B E%3D3e-04 embl:CAA58988.1%3B (X84195) acylphosphatase [Homo sapiens]%3B E%3D9e-04 swissprot:P00818%3B ACYM_HORSE ACYLPHOSPHATASE%2C MUSCLE TYPE%3B E%3D0.001 COG: TM1564%3B COG1254 Acylphosphatases%3B E%3D3e-05 PFAM: PF00708%3B Acylphosphatase%3B E%3D0.02 gene gene4954 http://www.ncbi.nlm.nih.gov/gene/?term=RB8840 RB8841 RB8841 gyrA gyrA 4701844 4704855 - DNA gyrase subunit A PMID: 2987847 best DB hits: BLAST: swissprot:P05653%3B GYRA_BACSU DNA GYRASE SUBUNIT A ----- pir:%3B E%3D0.0 swissprot:P48372%3B GYRA_PSEAE DNA GYRASE SUBUNIT A ----- pir:%3B E%3D0.0 gb:AAC34892.1%3B (AF085683) DNA gyrase A subunit [Methylovorus sp.%3B E%3D0.0 COG: BS_gyrA%3B COG0188 DNA gyrase (topoisomerase II) A subunit%3B E%3D0.0 PFAM: PF00521%3B DNA gyrase/topoisomerase IV%2C su%3B E%3D1.3e-246 gene gene4955 http://www.ncbi.nlm.nih.gov/gene/?term=RB8841 RB8843 RB8843 RB8843 4705018 4706850 + stage V sporulation protein K best DB hits: BLAST: embl:CAA72104.1%3B (Y11218) stage V sporulation protein K [Bacillus%3B E%3D1e-49 swissprot:O69733%3B Y2G8_MYCTU HYPOTHETICAL 62.4 KDA PROTEIN RV3868%3B E%3D1e-49 embl:CAB96009.1%3B (AL360055) hypothetical protein [Streptomyces%3B E%3D2e-49 COG: Rv3868%3B COG0464 ATPases of the AAA+ class%3B E%3D1e-50 slr0156%3B COG0542 ATPases with chaperone activity%2C ATP-binding domain%3B E%3D7e-05 AF0477%3B COG0464 ATPases of the AAA+ class%3B E%3D0.006 PFAM: PF00004%3B ATPase associated with va%3B E%3D8.9e-22 gene gene4956 http://www.ncbi.nlm.nih.gov/gene/?term=RB8843 RB8846 RB8846 RB8846 4706923 4707834 - hypothetical protein gene gene4957 http://www.ncbi.nlm.nih.gov/gene/?term=RB8846 RB8848 RB8848 ubiE ubiE 4707844 4708572 - ubiquinone/menaquinone biosynthesis methyltransferase UbiE best DB hits: BLAST: gb:AAK03770.1%3B (AE006205) UbiE [Pasteurella multocida]%3B E%3D0.011 embl:CAB86120.1%3B (AL163003) spermidine synthase%3B E%3D0.050 pir:G83392%3B hypothetical protein PA2034 [imported] - Pseudomonas%3B E%3D0.098 gene gene4958 http://www.ncbi.nlm.nih.gov/gene/?term=RB8848 RB8849 RB8849 RB8849 4708527 4709513 - hypothetical protein gene gene4959 http://www.ncbi.nlm.nih.gov/gene/?term=RB8849 RB885 RB885 RB885 468373 470172 + hypothetical protein gene gene480 http://www.ncbi.nlm.nih.gov/gene/?term=RB885 RB8851 RB8851 hpaG hpaG 4709464 4710327 - 2-hydroxyhepta-2%2C4-diene-1%2C7-dioate isomerase PMID: 8550403 best DB hits: BLAST: embl:CAC24092.1%3B (AL512982) hypothetical [Sulfolobus%3B E%3D1e-48 embl:CAB55723.1%3B (AL117387) hypothetical protein SCF41.20c%3B E%3D3e-18 pir:T45421%3B probable 2-hydroxyhepta-2%2C4-diene-1%2C7- dioate isomaerase%3B E%3D1e-10 COG: Rv2993c%3B COG0179 2-keto-4-pentenoate%3B E%3D2e-11 PFAM: PF01557%3B Fumarylacetoacetate (FAA) hydro%3B E%3D0.0074 gene gene4960 http://www.ncbi.nlm.nih.gov/gene/?term=RB8851 RB8853 RB8853 chsA chsA 4710412 4711515 - chalcone synthase PMID: 8108524 best DB hits: BLAST: pir:C75587%3B probable chalcone synthase - Deinococcus radiodurans%3B E%3D5e-46 pir:A75315%3B probable chalcone synthase - Deinococcus radiodurans%3B E%3D3e-35 gb:AAD43969.1%3B AF121274_1 (AF121274) chalcone synthase%3B E%3D1e-33 COG: DRA0326%3B COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III%3B E%3D5e-47 PFAM: PF00195%3B Chalcone and stilbene synthas%3B E%3D1.3e-28 PF02797%3B Chalcone and stilbene synthas%3B E%3D2.9e-25 gene gene4961 http://www.ncbi.nlm.nih.gov/gene/?term=RB8853 RB8854 RB8854 RB8854 4711512 4712861 - FAD-containing oxidoreductase best DB hits: BLAST: pir:D70549%3B hypothetical protein Rv0561c - Mycobacterium%3B E%3D0.12 PFAM: PF02737%3B 3-hydroxyacyl-CoA dehydrogenase%3B E%3D0.26 PF01494%3B FAD binding domain%3B E%3D0.039 PF00070%3B Pyridine nucleotide-disulphide%3B E%3D2.9e-09 gene gene4962 http://www.ncbi.nlm.nih.gov/gene/?term=RB8854 RB8857 RB8857 RB8857 4712858 4713613 - hypothetical protein best DB hits: BLAST: pir:D75587%3B hypothetical protein - Deinococcus radiodurans (strain%3B E%3D5e-04 pir:F75277%3B ubiquinonemenaquinone biosynthesis methyltransferase -%3B E%3D0.11 COG: DRA0327%3B COG0500 SAM-dependent methyltransferases%3B E%3D5e-05 gene gene4963 http://www.ncbi.nlm.nih.gov/gene/?term=RB8857 RB8859 RB8859 ldhA ldhA 4713610 4714608 - D-lactate dehydrogenase Catalyzes the reduction of sulfopyruvate to (R)-sulfolactate much more efficiently than the reverse reaction. Also catalyzes the reduction of oxaloacetate%2C alpha-ketoglutarate%2C and to a much lower extent%2C KHTCA%2C but not pyruvate. Involved in the biosynthes gene gene4964 http://www.ncbi.nlm.nih.gov/gene/?term=RB8859 RB886 RB886 RB886 470277 476306 - hypothetical protein PMID: 96163873 best DB hits: BLAST: pir:S75200%3B fat protein - Synechocystis sp. (strain PCC 6803) -----%3B E%3D6e-43 embl:CAA60685.1%3B (X87241) homologue of Drosophila Fat protein [Homo%3B E%3D2e-33 gb:AAD20459.1%3B (AF100960) protocadherin [Rattus norvegicus]%3B E%3D4e-32 PFAM: PF00028%3B Cadherin domain%3B E%3D0.001 gene gene481 http://www.ncbi.nlm.nih.gov/gene/?term=RB886 RB8861 RB8861 lgt lgt 4714690 4716168 - prolipoprotein diacylglyceryl transferase PMID: 7896715 best DB hits: BLAST: swissprot:P72846%3B LGT_SYNY3 PROBABLE PROLIPOPROTEIN DIACYLGLYCERYL%3B E%3D4e-07 pir:G70324%3B prolipoprotein diacylglyceryl transferase - Aquifex%3B E%3D3e-06 pir:D75473%3B prolipoprotein diacylglyceryl transferase - Deinococcus%3B E%3D8e-06 COG: sll1187%3B COG0682 Prolipoprotein diacylglyceryltransferase%3B E%3D4e-08 PFAM: PF01790%3B Prolipoprotein diacylglyceryl transf%3B E%3D7e-23 gene gene4965 http://www.ncbi.nlm.nih.gov/gene/?term=RB8861 RB8863 RB8863 RB8863 4716340 4716639 - signal peptide gene gene4966 http://www.ncbi.nlm.nih.gov/gene/?term=RB8863 RB8864 RB8864 RB8864 4716455 4716658 + signal peptide gene gene4967 http://www.ncbi.nlm.nih.gov/gene/?term=RB8864 RB8865 RB8865 RB8865 4716709 4716891 - hypothetical protein gene gene4968 http://www.ncbi.nlm.nih.gov/gene/?term=RB8865 RB8866 RB8866 RB8866 4716964 4718301 + hypothetical protein best DB hits: BLAST: pir:T44513%3B hypothetical protein 5P [imported] - Plesiomonas%3B E%3D3e-21 gb:AAG17422.1%3B AF285971_6 (AF285971) WbgV [Shigella sonnei]%3B E%3D4e-21 gb:AAA84874.1%3B (U34305) ORF6%3B Method: conceptual translation%3B E%3D4e-14 gene gene4969 http://www.ncbi.nlm.nih.gov/gene/?term=RB8866 RB8870 RB8870 RB8870 4718340 4719470 + Mrp protein homolog- chromosome partitioning ATPase best DB hits: BLAST: swissprot:Q9RVM9%3B MRP_DEIRA MRP PROTEIN HOMOLOG ----- pir:%3B E%3D1e-60 pir:B82576%3B polysaccharide export protein XF2301 [imported] -%3B E%3D3e-56 pir:A64114%3B probable ATPase mrp - Haemophilus influenzae (strain Rd%3B E%3D2e-53 COG: XF2301%3B COG0489 ATPases involved in chromosome partitioning%3B E%3D3e-57 PFAM: PF02374%3B Anion-transporting ATPase%3B E%3D0.097 PF01209%3B ubiE/COQ5 methyltransferase f%3B E%3D0.6 PF00991%3B ParA family ATPase%3B E%3D0.041 gene gene4970 http://www.ncbi.nlm.nih.gov/gene/?term=RB8870 RB8871 RB8871 fabG fabG 4719525 4720280 + 3-oxoacyl-ACP reductase PMID: 8759840 best DB hits: BLAST: pir:H75014%3B 3-oxoacyl-[acyl-carrier-protein] reductase PAB1085 -%3B E%3D6e-34 swissprot:P16543%3B DHK2_STRVN GRANATICIN POLYKETIDE SYNTHASE%3B E%3D9e-33 gb:AAC44307.1%3B (U59433) 3-ketoacyl-acyl carrier protein reductase%3B E%3D2e-30 COG: PAB1085%3B COG1028 Dehydrogenases with different specificities%3B E%3D6e-35 BH2491%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D3e-31 BS_fabG%3B COG1028 Dehydrogenases with different specificities%3B E%3D3e-31 PFAM: PF00106%3B short chain dehydrogenase%3B E%3D1.1e-62 gene gene4971 http://www.ncbi.nlm.nih.gov/gene/?term=RB8871 RB8872 RB8872 glpF glpF 4720343 4721158 + glycerol uptake facilitator protein PMID: 8436953 best DB hits: BLAST: swissprot:Q9X1E3%3B GLPF_THEMA PROBABLE GLYCEROL UPTAKE FACILITATOR%3B E%3D3e-37 swissprot:P18156%3B GLPF_BACSU GLYCEROL UPTAKE FACILITATOR PROTEIN%3B E%3D4e-33 ddbj:BAB04811.1%3B (AP001510) glycerol uptake facilitator [Bacillus%3B E%3D5e-33 COG: TM1429%3B COG0580 Glycerol uptake facilitator and related permeases%3B E%3D3e-38 PFAM: PF00230%3B Major intrinsic protein%3B E%3D6.1e-57 gene gene4972 http://www.ncbi.nlm.nih.gov/gene/?term=RB8872 RB8873 RB8873 RB8873 4721200 4723605 - sensory transduction histidine kinase PMID: 7984107 best DB hits: BLAST: pir:S75136%3B sensory transduction histidine kinase slr2104 -%3B E%3D2e-56 pir:S75525%3B sensory transduction histidine kinase sll1228 -%3B E%3D4e-50 pir:E82198%3B sensor histidine kinaseresponse regulator VC1445%3B E%3D5e-46 COG: VC1349_2%3B COG0642 Sensory transduction histidine kinases%3B E%3D2e-43 PFAM: PF00785%3B PAC motif%3B E%3D0.00017 PF00512%3B His Kinase A (phosphoacceptor%3B E%3D1.1e-25 PF02518%3B Histidine kinase-%2C DNA gyrase%3B E%3D8.9e-44 gene gene4973 http://www.ncbi.nlm.nih.gov/gene/?term=RB8873 RB8876 RB8876 RB8876 4723629 4723892 + hypothetical protein gene gene4974 http://www.ncbi.nlm.nih.gov/gene/?term=RB8876 RB8877 RB8877 RB8877 4723713 4723982 - hypothetical protein gene gene4975 http://www.ncbi.nlm.nih.gov/gene/?term=RB8877 RB8878 RB8878 yniI yniI 4724071 4725009 + hypothetical protein best DB hits: BLAST: gb:AAK05448.1%3B AE006367_4 (AE006367) HYPOTHETICAL PROTEIN%3B E%3D3e-10 pir:C69789%3B hypothetical protein ydjG - Bacillus subtilis -----%3B E%3D3e-09 ddbj:BAB05525.1%3B (AP001513) BH1806~~unknown conserved protein%3B E%3D5e-09 gene gene4976 http://www.ncbi.nlm.nih.gov/gene/?term=RB8878 RB8880 RB8880 ydjG ydjG 4724951 4725979 + hypothetical protein best DB hits: BLAST: pir:C69789%3B hypothetical protein ydjG - Bacillus subtilis -----%3B E%3D2e-07 embl:CAA76859.1%3B (Y17797) hypothetical protein [Enterococcus%3B E%3D2e-07 gb:AAK05448.1%3B AE006367_4 (AE006367) HYPOTHETICAL PROTEIN%3B E%3D8e-04 gene gene4977 http://www.ncbi.nlm.nih.gov/gene/?term=RB8880 RB8881 RB8881 RB8881 4726013 4726480 - hypothetical protein gene gene4978 http://www.ncbi.nlm.nih.gov/gene/?term=RB8881 RB8882 RB8882 pilE1 pilE1 4726461 4727510 - fimbrial protein MS11-C3/MS11-G2 precursor PMID: 1906968 best DB hits: BLAST: pir:S22102%3B fimbrial protein MS11-C3MS11-G2 precursor - Neisseria%3B E%3D0.57 pir:S22103%3B fimbrial protein MS11-E1MS11-F3 precursor - Neisseria%3B E%3D0.57 pir:S22104%3B fimbrial protein MS11-E3 precursor - Neisseria%3B E%3D0.57 PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.42 gene gene4979 http://www.ncbi.nlm.nih.gov/gene/?term=RB8882 RB8884 RB8884 RB8884 4727666 4727878 + hypothetical protein gene gene4980 http://www.ncbi.nlm.nih.gov/gene/?term=RB8884 RB8885 RB8885 RB8885 4727875 4729392 - phosphatase best DB hits: BLAST: pir:T34690%3B hypothetical protein SC1B5.12c SC1B5.12c - Streptomyces%3B E%3D2e-63 ddbj:BAB07623.1%3B (AP001520) BH3904~~unknown conserved protein in%3B E%3D7e-54 pir:T36920%3B hypothetical protein SCI7.24c - Streptomyces coelicolor%3B E%3D4e-48 COG: BH3904%3B COG3211 Predicted phosphatase%3B E%3D7e-55 gene gene4981 http://www.ncbi.nlm.nih.gov/gene/?term=RB8885 RB8886 RB8886 RB8886 4729323 4729475 - hypothetical protein gene gene4982 http://www.ncbi.nlm.nih.gov/gene/?term=RB8886 RB8888 RB8888 RB8888 4729500 4729718 - hypothetical protein gene gene4983 http://www.ncbi.nlm.nih.gov/gene/?term=RB8888 RB8889 RB8889 phoD phoD 4729717 4731300 + alkaline phosphatase PMID: 8760916 PMID: 25878 best DB hits: BLAST: swissprot:P42251%3B PPBD_BACSU ALKALINE PHOSPHATASE D PRECURSOR%3B E%3D1e-124 ddbj:BAA06483.1%3B (D30808) unknown [Bacillus subtilis]%3B E%3D1e-110 pir:T50595%3B probable alkaline phosphatase [imported] - Streptomyces%3B E%3D1e-103 gene gene4984 http://www.ncbi.nlm.nih.gov/gene/?term=RB8889 RB8890 RB8890 RB8890 4731429 4731620 - hypothetical protein gene gene4985 http://www.ncbi.nlm.nih.gov/gene/?term=RB8890 RB8891 RB8891 RB8891 4731627 4731824 - hypothetical protein gene gene4986 http://www.ncbi.nlm.nih.gov/gene/?term=RB8891 RB8892 RB8892 RB8892 4731727 4735809 + cytochrome c precursor best DB hits: BLAST: pir:A83363%3B probable cytochrome c precursor PA2266 [imported] -%3B E%3D6e-09 pir:B81167%3B cytochrome c552 NMB0717 precursor [similarity] - Neisseria%3B E%3D7e-09 pir:F83631%3B cytochrome c oxidase%2C subunit II PA0105 [imported] -%3B E%3D2e-08 COG: PA2266%3B COG2010 Cytochrome c%2C mono- and diheme variants%3B E%3D6e-10 gene gene4987 http://www.ncbi.nlm.nih.gov/gene/?term=RB8892 RB8895 RB8895 nanH nanH 4736087 4737343 + neuraminidase precursor PMID: 8093075 best DB hits: BLAST: ddbj:BAA05853.1%3B (D28493) neuraminidase precursor [Bacteroides%3B E%3D4e-90 pir:JC2500%3B exo-alpha-sialidase (EC 3.2.1.18) precursor -%3B E%3D8e-89 swissprot:P31206%3B NANH_BACFR SIALIDASE (NEURAMINIDASE) -----%3B E%3D2e-68 PFAM: PF02012%3B BNR repeat%3B E%3D0.038 gene gene4988 http://www.ncbi.nlm.nih.gov/gene/?term=RB8895 RB8898 RB8898 RB8898 4737468 4738433 + hypothetical protein best DB hits: BLAST: pir:E82335%3B hypothetical protein VC0334 [imported] - Vibrio cholerae%3B E%3D3e-58 PFAM: PF02272%3B DHHA1 domain%3B E%3D0.84 gene gene4989 http://www.ncbi.nlm.nih.gov/gene/?term=RB8898 RB89 RB89 RB89 35663 36370 + hypothetical protein best DB hits: PFAM: PF00975%3B Thioesterase domain%3B E%3D0.51 PF00561%3B alpha/beta hydrolase fold%3B E%3D0.084 gene gene51 http://www.ncbi.nlm.nih.gov/gene/?term=RB89 RB8900 RB8900 RB8900 4738478 4738645 + hypothetical protein gene gene4990 http://www.ncbi.nlm.nih.gov/gene/?term=RB8900 RB8901 RB8901 RB8901 4738703 4740295 + hypothetical protein best DB hits: BLAST: pir:S75223%3B hypothetical protein sll1835 - Synechocystis sp. (strain%3B E%3D0.16 gene gene4991 http://www.ncbi.nlm.nih.gov/gene/?term=RB8901 RB8902 RB8902 RB8902 4740226 4740474 - hypothetical protein gene gene4992 http://www.ncbi.nlm.nih.gov/gene/?term=RB8902 RB8903 RB8903 RB8903 4740607 4740744 - hypothetical protein gene gene4993 http://www.ncbi.nlm.nih.gov/gene/?term=RB8903 RB8904 RB8904 tyv tyv 4740862 4741962 + CDP-tyvelose epimerase PMID: 8541300 PMID: 9004408 best DB hits: BLAST: gb:AAB48319.1%3B (U29691) CDP-tyvelose epimerase [Yersinia%3B E%3D5e-14 pir:B33604%3B rfbE protein - Salmonella sp%3B E%3D1e-11 swissprot:P14169%3B RFBE_SALTI CDP-TYVELOSE-2-EPIMERASE -----%3B E%3D1e-11 COG: PAB1299%3B COG0451 Nucleoside-diphosphate-sugar epimerases%3B E%3D3e-09 PAB0785%3B COG1088 dTDP-D-glucose 4%2C6-dehydratase%3B E%3D7e-08 PH1742%3B COG0451 Nucleoside-diphosphate-sugar epimerases%3B E%3D2e-07 PFAM: PF01370%3B NAD dependent epimerase/dehydratase%3B E%3D2.5e-05 gene gene4994 http://www.ncbi.nlm.nih.gov/gene/?term=RB8904 RB8905 RB8905 RB8905 4742073 4742894 + polyprenol phosphate mannosyl transferase 1 (Ppm1) best DB hits: BLAST: embl:CAC15463.1%3B (AJ294477) polyprenol phosphate%3B E%3D6e-18 pir:B70945%3B hypothetical protein Rv2051c - Mycobacterium%3B E%3D2e-16 embl:CAB11300.1%3B (Z98604) hypothetical protein MLCB2052.02%3B E%3D2e-14 COG: Rv2051c_2%3B COG0463 Glycosyltransferases involved in cell wall%3B E%3D6e-17 PFAM: PF00535%3B Glycosyl transferase%3B E%3D4.6e-17 gene gene4995 http://www.ncbi.nlm.nih.gov/gene/?term=RB8905 RB8908 RB8908 RB8908 4743202 4743357 + hypothetical protein gene gene4996 http://www.ncbi.nlm.nih.gov/gene/?term=RB8908 RB8909 RB8909 RB8909 4743469 4745151 + Na/phosphate symporter best DB hits: BLAST: ddbj:BAB05126.1%3B (AP001511) BH1407~~unknown conserved protein%3B E%3D2e-60 pir:H71283%3B conserved hypothetical integral membrane protein TP0771%3B E%3D1e-47 embl:CAC27413.1%3B (AJ307315) membrane protein%3B E%3D4e-47 COG: BH1407%3B COG1283 Na+/phosphate symporter%3B E%3D2e-61 PFAM: PF02690%3B Na+/Pi-cotransporter%3B E%3D1.4e-26 gene gene4997 http://www.ncbi.nlm.nih.gov/gene/?term=RB8909 RB8910 RB8910 RB8910 4745087 4745500 + hypothetical protein gene gene4998 http://www.ncbi.nlm.nih.gov/gene/?term=RB8910 RB8913 RB8913 trpF trpF 4745692 4746429 - N-(5'-phosphoribosyl)anthranilate isomerase PMID: 96003619 PMID: 97309356 best DB hits: BLAST: pdb:1DL3%3B A Chain A%2C Crystal Structure Of Mutually Generated%3B E%3D2e-19 swissprot:Q56320%3B TRPF_THEMA N-(5'-PHOSPHORIBOSYL)ANTHRANILATE%3B E%3D5e-19 pir:E81935%3B probable phosphoribosylanthranilate isomerase (EC%3B E%3D6e-18 COG: TM0139%3B COG0135 Phosphoribosylanthranilate isomerase%3B E%3D5e-20 PFAM: PF00697%3B N-(5'phosphoribosyl)anthranilate (PR%3B E%3D7.3e-41 gene gene5000 http://www.ncbi.nlm.nih.gov/gene/?term=RB8913 RB8914 RB8914 RB8914 4746481 4747422 + hypothetical protein gene gene5001 http://www.ncbi.nlm.nih.gov/gene/?term=RB8914 RB8917 RB8917 RB8917 4747435 4747659 + hypothetical protein gene gene5002 http://www.ncbi.nlm.nih.gov/gene/?term=RB8917 RB8919 RB8919 lueS lueS 4747666 4750518 + leucyl-tRNA synthetase PMID: 1317842 best DB hits: BLAST: ddbj:BAB17162.1%3B (AP002868) leucyl-tRNA synthetase%3B E%3D0.0 embl:CAB77903.1%3B (AL161500) leucyl tRNA synthetase%3B E%3D0.0 gb:AAK04914.1%3B AE006315_3 (AE006315) leucyl-tRNA synthetase (EC%3B E%3D0.0 COG: TP0586%3B COG0495 Leucyl-tRNA synthetase%3B E%3D0.0 PFAM: PF00133%3B tRNA synthetases class I (I%2C L%3B E%3D1.4e-39 gene gene5003 http://www.ncbi.nlm.nih.gov/gene/?term=RB8919 RB8921 RB8921 RB8921 4750749 4751930 - acyltransferase best DB hits: BLAST: embl:CAB69781.1%3B (AL137187) membrane protein%3B E%3D2e-18 pir:T36253%3B probable membrane protein - Streptomyces coelicolor%3B E%3D1e-16 pir:T21781%3B hypothetical protein F35E2.6 - Caenorhabditis elegans%3B E%3D4e-06 COG: BS_yrhL%3B COG1835 Predicted acyltransferases%3B E%3D1e-05 gene gene5004 http://www.ncbi.nlm.nih.gov/gene/?term=RB8921 RB8923 RB8923 RB8923 4751924 4752370 + hypothetical protein gene gene5005 http://www.ncbi.nlm.nih.gov/gene/?term=RB8923 RB8924 RB8924 bcpC bcpC 4752367 4753608 + cofactor-independent phosphoglycerate mutase catalyzes the interconversion of 3-phosphoglycerate and 2-phosphoglycerate%3B this enzyme does not require the cofactor 2%2C3-bisphosphoglycerate as a phosphate donor%3B BPG-independent PGAM%3B aPGAM gene gene5006 http://www.ncbi.nlm.nih.gov/gene/?term=RB8924 RB8926 RB8926 ask ask 4753687 4755474 + aspartate kinase catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP gene gene5007 http://www.ncbi.nlm.nih.gov/gene/?term=RB8926 RB8927 RB8927 pbrT pbrT 4755670 4757094 - PbrT protein- c-type cytochrome PMID: 21429239 best DB hits: BLAST: embl:CAC28871.1%3B (AJ278984) PbrT protein [Ralstonia%3B E%3D2e-05 pir:B82990%3B hypothetical protein PA5248 [imported] - Pseudomonas%3B E%3D0.15 PFAM: PF00034%3B Cytochrome c%3B E%3D0.04 gene gene5008 http://www.ncbi.nlm.nih.gov/gene/?term=RB8927 RB8928 RB8928 RB8928 4757129 4758355 - 1-acyl-sn-glycerol-3-phosphate acyltransferase best DB hits: BLAST: pir:S74905%3B hypothetical protein slr2060 - Synechocystis sp. (strain%3B E%3D4e-10 ddbj:BAB05354.1%3B (AP001512) BH1635~~unknown conserved protein%3B E%3D0.004 gb:AAF73599.1%3B (AE002342) 1-acyl-sn-glycerol-3-phosphate%3B E%3D0.004 COG: BH1635%3B COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase%3B E%3D4e-04 PFAM: PF01553%3B Acyltransferase%3B E%3D2.7e-09 gene gene5009 http://www.ncbi.nlm.nih.gov/gene/?term=RB8928 RB8929 RB8929 RB8929 4758352 4759884 - protein kinase yloP- serine/threonine protein kinase PMID: 1835671 best DB hits: BLAST: pir:H69878%3B probable protein kinase (EC 2.7.1.-) yloP - Bacillus%3B E%3D3e-44 pir:T36717%3B probable serinethreonine protein kinase - Streptomyces%3B E%3D2e-42 swissprot:P54744%3B PKNB_MYCLE SERINETHREONINE-PROTEIN%3B E%3D7e-42 COG: BS_yloP_1%3B COG0515 Serine/threonine protein kinases%3B E%3D3e-45 PFAM: PF01740%3B STAS domain%3B E%3D0.19 PF00069%3B Protein kinase domain%3B E%3D7.3e-58 gene gene5010 http://www.ncbi.nlm.nih.gov/gene/?term=RB8929 RB893 RB893 RB893 476445 477704 + fibrinogen-binding protein PMID: 9884231 best DB hits: BLAST: pir:T28679%3B fibrinogen-binding protein homolog - Staphylococcus%3B E%3D0.003 embl:CAB75732.1%3B (Y18653) bone sialoprotein-binding protein%3B E%3D0.024 pir:T28680%3B fibrinogen-binding protein homolog - Staphylococcus%3B E%3D0.030 gene gene482 http://www.ncbi.nlm.nih.gov/gene/?term=RB893 RB8930 RB8930 RB8930 4759922 4760098 + hypothetical protein gene gene5011 http://www.ncbi.nlm.nih.gov/gene/?term=RB8930 RB8932 RB8932 RB8932 4760145 4760954 + hypothetical protein best DB hits: BLAST: ddbj:BAA84086.1%3B (AB032065) hypothetical protein [Streptomyces%3B E%3D3e-15 embl:CAB61872.1%3B (AL133252) hypothetical protein SCE46.21%3B E%3D7e-14 gb:AAC15821.1%3B (U44977) unknown [Prochlorococcus marinus]%3B E%3D7e-13 COG: sll1095%3B COG3222 Uncharacterized BCR%3B E%3D5e-08 gene gene5012 http://www.ncbi.nlm.nih.gov/gene/?term=RB8932 RB8935 RB8935 RB8935 4760956 4762170 + D-amino acid oxidase PMID: 8682785 best DB hits: BLAST: swissprot:P33642%3B Y9E8_PSEAE PROBABLE D-AMINO ACID OXIDASE PA4548%3B E%3D5e-27 ddbj:BAB05760.1%3B (AP001514) BH2041~~unknown conserved protein%3B E%3D6e-26 gb:AAB39269.1%3B (L48934) homolgous to D-amino acid dehydrogenase%3B E%3D1e-25 COG: PA4548%3B COG0665 Glycine/D-amino acid oxidases (deaminating)%3B E%3D5e-28 PFAM: PF01494%3B FAD binding domain%3B E%3D0.022 PF02254%3B KTN NAD-binding domain%3B E%3D0.00026 PF00070%3B Pyridine nucleotide-disulphide%3B E%3D0.00011 gene gene5013 http://www.ncbi.nlm.nih.gov/gene/?term=RB8935 RB8937 RB8937 noxA noxA 4762195 4763877 - NADH oxidase best DB hits: BLAST: pir:B82434%3B probable NADH oxidase VCA0644 [imported] - Vibrio%3B E%3D1e-102 gb:AAK04884.1%3B AE006312_4 (AE006312) NADH oxidase [Lactococcus%3B E%3D3e-99 gb:AAB90837.1%3B (AE001077) NADH oxidase (noxA-3) [Archaeoglobus%3B E%3D2e-75 COG: VCA0644_1%3B COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases%3B E%3D5e-87 BH0613%3B COG1251 NAD(P)H-nitrite reductase%3B E%3D1e-18 PFAM: PF01266%3B D-amino acid oxidase%3B E%3D0.47 PF02032%3B Phytoene dehydrogenase related%3B E%3D0.14 PF00070%3B Pyridine nucleotide-disulphide%3B E%3D8.8e-72 gene gene5014 http://www.ncbi.nlm.nih.gov/gene/?term=RB8937 RB8939 RB8939 RB8939 4763963 4764310 + transcriptional regulator PMID: 8231807 PMID: 9457888 best DB hits: BLAST: pir:B70850%3B probable transcriptional regulator Rv0081 - Mycobacterium%3B E%3D7e-07 pir:D82766%3B transcriptional regulator ArsR family XF0767 [imported] -%3B E%3D1e-06 pir:E70585%3B probable transcriptional regulator Rv2358 - Mycobacterium%3B E%3D4e-06 COG: Rv0081%3B COG0640 Predicted transcriptional regulators%3B E%3D7e-08 PFAM: PF01022%3B Bacterial regulatory protein%2C arsR f%3B E%3D1.8e-18 gene gene5015 http://www.ncbi.nlm.nih.gov/gene/?term=RB8939 RB8941 RB8941 RB8941 4764387 4766054 + ketoglutarate semialdehyde dehydrogenase PMID: 96118391 PMID: 20363527 best DB hits: BLAST: pir:S27619%3B ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.-) -%3B E%3D2e-65 pir:S27612%3B ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.-) -%3B E%3D6e-61 pdb:1EYY%3B A Chain A%2C Crystal Structure Of The Nadp+ Dependent%3B E%3D5e-54 COG: PA2217%3B COG1012 NAD-dependent aldehyde dehydrogenases%3B E%3D4e-54 PFAM: PF00171%3B Aldehyde dehydrogenase%3B E%3D3.5e-08 gene gene5016 http://www.ncbi.nlm.nih.gov/gene/?term=RB8941 RB8943 RB8943 RB8943 4766175 4766504 - hypothetical protein gene gene5017 http://www.ncbi.nlm.nih.gov/gene/?term=RB8943 RB8945 RB8945 RB8945 4766541 4767818 + hypothetical protein gene gene5018 http://www.ncbi.nlm.nih.gov/gene/?term=RB8945 RB8947 RB8947 RB8947 4767992 4774183 + hypothetical protein best DB hits: PFAM: PF02058%3B Guanylin precursor%3B E%3D0.81 gene gene5019 http://www.ncbi.nlm.nih.gov/gene/?term=RB8947 RB895 RB895 RB895 477738 477938 - hypothetical protein gene gene483 http://www.ncbi.nlm.nih.gov/gene/?term=RB895 RB8957 RB8957 RB8957 4774288 4775019 + hypothetical protein gene gene5020 http://www.ncbi.nlm.nih.gov/gene/?term=RB8957 RB8959 RB8959 RB8959 4775133 4777121 - signal peptide gene gene5021 http://www.ncbi.nlm.nih.gov/gene/?term=RB8959 RB896 RB896 RB896 477914 478597 - hypothetical protein gene gene484 http://www.ncbi.nlm.nih.gov/gene/?term=RB896 RB8964 RB8964 RB8964 4777134 4777445 - hypothetical protein gene gene5022 http://www.ncbi.nlm.nih.gov/gene/?term=RB8964 RB8965 RB8965 RB8965 4777180 4777473 + hypothetical protein gene gene5023 http://www.ncbi.nlm.nih.gov/gene/?term=RB8965 RB8966 RB8966 groEL groEL 4777493 4779475 + molecular chaperone GroEL PMID: 8097179 best DB hits: BLAST: swissprot:O67943%3B CH60_AQUAE 60 KDA CHAPERONIN (PROTEIN CPN60)%3B E%3D1e-160 swissprot:P35471%3B CH63_RHIME 60 KDA CHAPERONIN C (PROTEIN CPN60 C)%3B E%3D1e-159 swissprot:P45746%3B CH60_THETH 60 KDA CHAPERONIN (PROTEIN CPN60)%3B E%3D1e-159 COG: aq_2200%3B COG0459 Chaperonin GroEL (HSP60 family)%3B E%3D1e-161 PFAM: PF00118%3B TCP-1/cpn60 chaperonin family%3B E%3D3.3e-207 gene gene5024 http://www.ncbi.nlm.nih.gov/gene/?term=RB8966 RB8969 RB8969 groES groES 4779554 4779859 + molecular chaperone GroES PMID: 7913076 PMID: 9387235 best DB hits: BLAST: swissprot:P40172%3B CH10_STRCO 10 KDA CHAPERONIN (PROTEIN CPN10)%3B E%3D1e-23 swissprot:P26195%3B CH10_LEGMI 10 KD CHAPERONIN (PROTEIN CPN10)%3B E%3D5e-22 swissprot:Q07200%3B CH10_BACST 10 KD CHAPERONIN (PROTEIN CPN10)%3B E%3D6e-22 COG: BS_groES%3B COG0234 Co-chaperonin GroES (HSP10)%3B E%3D1e-22 PFAM: PF00166%3B Chaperonin 10 Kd subunit%3B E%3D5.4e-52 gene gene5025 http://www.ncbi.nlm.nih.gov/gene/?term=RB8969 RB897 RB897 RB897 477995 478672 + hypothetical protein gene gene485 http://www.ncbi.nlm.nih.gov/gene/?term=RB897 RB8970 RB8970 groEL groEL 4779905 4781527 + molecular chaperone GroEL PMID: 8097179 best DB hits: BLAST: swissprot:P35471%3B CH63_RHIME 60 KDA CHAPERONIN C (PROTEIN CPN60 C)%3B E%3D1e-163 gb:AAF64160.1%3B AF239163_2 (AF239163) GroEL [Rhizobium%3B E%3D1e-163 swissprot:P77829%3B CH61_BRAJA 60 KD CHAPERONIN 1 (PROTEIN CPN60 1)%3B E%3D1e-162 COG: TM0506%3B COG0459 Chaperonin GroEL (HSP60 family)%3B E%3D1e-163 PFAM: PF00118%3B TCP-1/cpn60 chaperonin family%3B E%3D4.9e-226 gene gene5026 http://www.ncbi.nlm.nih.gov/gene/?term=RB8970 RB8972 RB8972 dnaJ dnaJ 4781697 4782872 + molecular chaperone DnaJ PMID: 9061015 best DB hits: BLAST: pir:A83052%3B DnaJ protein PA4760 [imported] - Pseudomonas aeruginosa%3B E%3D6e-83 swissprot:Q9ZFC5%3B DNAJ_METSS CHAPERONE PROTEIN DNAJ ----- gb:%3B E%3D3e-81 gb:AAG54315.1%3B AE005178_5 (AE005178) chaperone with DnaK%3B heat%3B E%3D1e-80 COG: PA4760%3B COG0484 Molecular chaperones (contain C-terminal Zn finger%3B E%3D5e-84 PFAM: PF00226%3B DnaJ domain%3B E%3D2.8e-32 PF00684%3B DnaJ central domain (4 repeats)%3B E%3D1.3e-22 PF01556%3B DnaJ C terminal region%3B E%3D7e-58 gene gene5027 http://www.ncbi.nlm.nih.gov/gene/?term=RB8972 RB8974 RB8974 grpE grpE 4782869 4783471 + molecular chaperone GrpE PMID: 10024539 PMID: 2108432 PMID: 1339421 best DB hits: BLAST: swissprot:Q9ZCT4%3B GRPE_RICPR GRPE PROTEIN (HSP-70 COFACTOR)%3B E%3D3e-19 swissprot:P95333%3B GRPS_MYXXA GRPS PROTEIN ----- gb: AAC64204.1%3B E%3D2e-18 gb:AAC72386.1%3B (AF098635) chaperone GrpE type 1 [Nicotiana%3B E%3D3e-18 COG: RP629%3B COG0576 Molecular chaperone GrpE (heat shock protein)%3B E%3D3e-20 PFAM: PF01025%3B GrpE%3B E%3D1e-49 gene gene5028 http://www.ncbi.nlm.nih.gov/gene/?term=RB8974 RB8975 RB8975 RB8975 4783556 4783888 - signal peptide gene gene5029 http://www.ncbi.nlm.nih.gov/gene/?term=RB8975 RB8976 RB8976 RB8976 4783568 4783846 + hypothetical protein best DB hits: BLAST: pir:F72411%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D3e-08 embl:CAB90971.1%3B (AL355832) hypothetical protein SCE22.04%3B E%3D6e-07 pir:B70601%3B hypothetical protein Rv0991c - Mycobacterium%3B E%3D2e-06 COG: TM0144%3B COG2331 Uncharacterized BCR%3B E%3D3e-09 gene gene5030 http://www.ncbi.nlm.nih.gov/gene/?term=RB8976 RB8978 RB8978 RB8978 4783977 4784783 + metal-dependent hydrolase best DB hits: BLAST: pir:E83520%3B conserved hypothetical protein PA1012 [imported] -%3B E%3D4e-34 embl:CAB65404.1%3B (AJ012052) YycJ protein [Staphylococcus aureus]%3B E%3D3e-28 embl:CAB64977.1%3B (AJ012050) YycJ protein [Enterococcus faecalis]%3B E%3D2e-27 COG: PA1012%3B COG1235 Metal-dependent hydrolases of the beta-lactamase%3B E%3D4e-35 PAB0518%3B COG1237 Metal-dependent hydrolases of the beta-lactamase%3B E%3D0.005 BS_yqgX%3B COG0491 Zn-dependent hydrolases%2C including glyoxylases%3B E%3D0.007 PFAM: PF00753%3B Metallo-beta-lactamase superfamil%3B E%3D6.5e-14 gene gene5031 http://www.ncbi.nlm.nih.gov/gene/?term=RB8978 RB8979 RB8979 RB8979 4785013 4786671 + L-serine dehydratase%2C alpha chain PMID: 2504697 PMID: 8436113 best DB hits: BLAST: swissprot:O34607%3B SDHA_BACSU PROBABLE L-SERINE DEHYDRATASE%2C ALPHA%3B E%3D1e-26 ddbj:BAB06215.1%3B (AP001515) L-serine dehydratase alpha subunit%3B E%3D9e-26 gb:AAK04929.1%3B AE006316_10 (AE006316) alpha-subuni L-serine%3B E%3D5e-25 COG: BS_ylpA%3B COG1760 L-serine deaminase%3B E%3D1e-27 gene gene5032 http://www.ncbi.nlm.nih.gov/gene/?term=RB8979 RB898 RB898 RB898 478681 480243 - sulfatase 1 precursor PMID: 20233298 PMID: 11743194 best DB hits: BLAST: gb:AAF30402.1%3B AF109924_1 (AF109924) sulfatase 1 precursor [Helix%3B E%3D0.009 gene gene486 http://www.ncbi.nlm.nih.gov/gene/?term=RB898 RB8980 RB8980 RB8980 4786833 4788689 - hypothetical protein gene gene5033 http://www.ncbi.nlm.nih.gov/gene/?term=RB8980 RB8983 RB8983 moxR moxR 4788960 4790000 + moxR-like transcriptional regulator protein best DB hits: BLAST: pir:G71146%3B hypothetical protein PH0385 - Pyrococcus horikoshii%3B E%3D3e-58 pir:C83106%3B conserved hypothetical protein PA4322 [imported] -%3B E%3D2e-56 pir:D75008%3B methanol dehydrogenase regulatory protein (moxr-2)%3B E%3D3e-56 COG: PH0385%3B COG0714 MoxR-like ATPases%3B E%3D2e-59 PFAM: PF00004%3B ATPase associated with v%3B E%3D0.23 PF01078%3B Magnesium chelatase%2C subunit Ch%3B E%3D1.9e-12 gene gene5034 http://www.ncbi.nlm.nih.gov/gene/?term=RB8983 RB8985 RB8985 RB8985 4790156 4790524 + hypothetical protein best DB hits: BLAST: pir:A81035%3B conserved hypothetical protein NMB1852 [imported] -%3B E%3D2e-18 gb:AAC78448.1%3B (AF029361) similar to E. coli ORF%2C encoded by%3B E%3D7e-18 gb:AAC78450.1%3B (AF029362) similar to E. coli ORF%2C encoded by%3B E%3D2e-17 COG: NMB1852%3B COG2852 Uncharacterized BCR%3B E%3D2e-19 gene gene5035 http://www.ncbi.nlm.nih.gov/gene/?term=RB8985 RB8987 RB8987 RB8987 4790710 4790856 - hypothetical protein gene gene5036 http://www.ncbi.nlm.nih.gov/gene/?term=RB8987 RB8988 RB8988 RB8988 4790886 4791797 + hypothetical protein best DB hits: BLAST: pir:G70121%3B conserved hypothetical protein BB0175 - Lyme disease%3B E%3D2e-13 swissprot:P71761%3B YE80_MYCTU HYPOTHETICAL 34.3 KDA PROTEIN RV1480%3B E%3D1e-12 pir:D83106%3B hypothetical protein PA4323 [imported] - Pseudomonas%3B E%3D2e-11 COG: BB0175%3B COG1721 Uncharacterized ACR%3B E%3D2e-14 PFAM: PF01882%3B Protein of unknown function DUF%3B E%3D6.5e-23 gene gene5037 http://www.ncbi.nlm.nih.gov/gene/?term=RB8988 RB8992 RB8992 RB8992 4791794 4793851 + hypothetical protein gene gene5038 http://www.ncbi.nlm.nih.gov/gene/?term=RB8992 RB8999 RB8999 RB8999 4793791 4796112 + transmembrane protein PMID: 11214968 gene gene5039 http://www.ncbi.nlm.nih.gov/gene/?term=RB8999 RB900 RB900 RB900 480387 482858 - signal peptide gene gene487 http://www.ncbi.nlm.nih.gov/gene/?term=RB900 RB9000 RB9000 RB9000 4794141 4794812 - signal peptide gene gene5040 http://www.ncbi.nlm.nih.gov/gene/?term=RB9000 RB9002 RB9002 RB9002 4796028 4799393 + hypothetical protein gene gene5041 http://www.ncbi.nlm.nih.gov/gene/?term=RB9002 RB9009 RB9009 RB9009 4799393 4800166 + signal peptide gene gene5042 http://www.ncbi.nlm.nih.gov/gene/?term=RB9009 RB9010 RB9010 RB9010 4800154 4800963 + signal peptide gene gene5043 http://www.ncbi.nlm.nih.gov/gene/?term=RB9010 RB9011 RB9011 RB9011 4800960 4802027 + squalene-hopene cyclase PMID: 92104976 best DB hits: BLAST: pir:A43300%3B squalene-hopene cyclase (EC 5.4.99.-) - Alicyclobacillus%3B E%3D0.089 gene gene5044 http://www.ncbi.nlm.nih.gov/gene/?term=RB9011 RB9012 RB9012 cycX cycX 4801715 4804966 + cytochrome c biogenesis protein CycX-like protein best DB hits: BLAST: pir:F75549%3B cytochrome c biogenesis protein CycX homolog DR0189%3B E%3D1e-15 pir:E69891%3B cytochrome c biogenesis protein CycX homolog homolog yneN%3B E%3D9e-14 swissprot:P35160%3B RESA_BACSU RESA PROTEIN ----- pir: S45556%3B E%3D2e-13 COG: DR0189%3B COG0526 Thiol-disulfide isomerase and thioredoxins%3B E%3D1e-16 PFAM: PF00578%3B AhpC/TSA family%3B E%3D0.072 PF00085%3B Thioredoxin%3B E%3D9.1e-07 gene gene5045 http://www.ncbi.nlm.nih.gov/gene/?term=RB9012 RB9013 RB9013 RB9013 4802188 4802682 - signal peptide gene gene5046 http://www.ncbi.nlm.nih.gov/gene/?term=RB9013 RB9015 RB9015 RB9015 4804993 4805181 + signal peptide gene gene5047 http://www.ncbi.nlm.nih.gov/gene/?term=RB9015 RB9017 RB9017 RB9017 4805225 4805806 + RNA polymerase sigma-H factor best DB hits: BLAST: pir:C82583%3B RNA polymerase sigma-H factor XF2239 [imported] -%3B E%3D0.001 embl:CAC01348.1%3B (AL390975) ECF-subfamily sigma factor%3B E%3D0.018 gb:AAC45221.1%3B (U87307) extracytoplasmic function alternative%3B E%3D0.030 COG: XF2239%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D1e-04 PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D0.016 PF00196%3B Bacterial regulatory proteins%2C%3B E%3D0.13 gene gene5048 http://www.ncbi.nlm.nih.gov/gene/?term=RB9017 RB9019 RB9019 pknB pknB 4805803 4807269 + serine/threonine-protein kinase pknB PMID: 7774814 best DB hits: BLAST: swissprot:P54744%3B PKNB_MYCLE SERINETHREONINE-PROTEIN%3B E%3D4e-41 ddbj:BAB06223.1%3B (AP001515) serinethreonine protein kinase%3B E%3D2e-38 pir:T36717%3B probable serinethreonine protein kinase - Streptomyces%3B E%3D4e-38 COG: BH2504_1%3B COG0515 Serine/threonine protein kinases%3B E%3D2e-39 PFAM: PF00069%3B Protein kinase domain%3B E%3D5.1e-52 gene gene5049 http://www.ncbi.nlm.nih.gov/gene/?term=RB9019 RB9020 RB9020 RB9020 4807486 4808631 + signal peptide gene gene5050 http://www.ncbi.nlm.nih.gov/gene/?term=RB9020 RB9022 RB9022 RB9022 4808543 4808899 + hypothetical protein gene gene5051 http://www.ncbi.nlm.nih.gov/gene/?term=RB9022 RB9023 RB9023 RB9023 4808850 4809074 + hypothetical protein gene gene5052 http://www.ncbi.nlm.nih.gov/gene/?term=RB9023 RB9024 RB9024 RB9024 4809050 4809190 - hypothetical protein gene gene5053 http://www.ncbi.nlm.nih.gov/gene/?term=RB9024 RB9026 RB9026 RB9026 4809363 4810784 - NADH-dependent dyhydrogenase best DB hits: BLAST: swissprot:O05389%3B YRBE_BACSU HYPOTHETICAL 37.8 KDA PROTEIN IN%3B E%3D2e-08 swissprot:P40332%3B YISS_BACSU HYPOTHETICAL 37.5 KD PROTEIN IN%3B E%3D1e-07 ddbj:BAB04967.1%3B (AP001511) NADH-dependent dyhydrogenase%3B E%3D1e-06 COG: BS_yrbE%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D2e-09 PFAM: PF01408%3B Oxidoreductase%2C NAD-bin%3B E%3D3.2e-25 gene gene5054 http://www.ncbi.nlm.nih.gov/gene/?term=RB9026 RB9029 RB9029 RB9029 4810823 4813102 + zinc metalloproteinase PMID: 10571076 best DB hits: BLAST: embl:CAB08809.1%3B (Z95398) unknown [Mycobacterium leprae]%3B E%3D1e-152 pir:C70838%3B probable zinc metalloproteinase Rv0198c - Mycobacterium%3B E%3D1e-150 ddbj:BAA24495.1%3B (AB010440) PepO [Porphyromonas gingivalis]%3B E%3D1e-142 PFAM: PF01447%3B Thermolysin metallopeptidase%2C c%3B E%3D0.64 PF01431%3B Peptidase M13%3B E%3D1.3e-88 gene gene5055 http://www.ncbi.nlm.nih.gov/gene/?term=RB9029 RB9030 RB9030 RB9030 4813245 4815728 + hypothetical protein gene gene5056 http://www.ncbi.nlm.nih.gov/gene/?term=RB9030 RB9032 RB9032 RB9032 4815824 4818418 - hypothetical protein gene gene5057 http://www.ncbi.nlm.nih.gov/gene/?term=RB9032 RB9034 RB9034 RB9034 4818355 4821450 + hypothetical protein best DB hits: PFAM: PF00515%3B TPR Domain%3B E%3D0.008 gene gene5058 http://www.ncbi.nlm.nih.gov/gene/?term=RB9034 RB9037 RB9037 RB9037 4821537 4822571 + hypothetical protein best DB hits: BLAST: gb:AAF46853.2%3B (AE003457) CG4554 gene product [Drosophila%3B E%3D0.55 PFAM: PF00515%3B TPR Domain%3B E%3D0.5 gene gene5059 http://www.ncbi.nlm.nih.gov/gene/?term=RB9037 RB9038 RB9038 RB9038 4822642 4823103 - hypothetical protein gene gene5060 http://www.ncbi.nlm.nih.gov/gene/?term=RB9038 RB9039 RB9039 RB9039 4823138 4824610 - sulfatase gene gene5061 http://www.ncbi.nlm.nih.gov/gene/?term=RB9039 RB9042 RB9042 RB9042 4824607 4827714 - hypothetical protein gene gene5062 http://www.ncbi.nlm.nih.gov/gene/?term=RB9042 RB9047 RB9047 RB9047 4828072 4829721 + hypothetical protein gene gene5063 http://www.ncbi.nlm.nih.gov/gene/?term=RB9047 RB905 RB905 RB905 482976 483482 - hypothetical protein best DB hits: PFAM: PF00036%3B EF hand%3B E%3D0.00036 gene gene488 http://www.ncbi.nlm.nih.gov/gene/?term=RB905 RB9050 RB9050 RB9050 4829676 4829846 - hypothetical protein gene gene5064 http://www.ncbi.nlm.nih.gov/gene/?term=RB9050 RB9053 RB9053 RB9053 4830021 4834586 + hypothetical protein best DB hits: BLAST: pir:F69009%3B probable membrane protein MTH1074 - Methanobacterium%3B E%3D1e-19 pir:T28679%3B fibrinogen-binding protein homolog - Staphylococcus aureus%3B E%3D0.008 pir:B75556%3B hypothetical protein - Deinococcus radiodurans (strain R1)%3B E%3D0.059 PFAM: PF01345%3B Domain of unknown function DUF11%3B E%3D0.14 gene gene5065 http://www.ncbi.nlm.nih.gov/gene/?term=RB9053 RB9057 RB9057 RB9057 4834562 4834849 - hypothetical protein best DB hits: BLAST: gb:AAB91043.1%3B (AE001093) conserved hypothetical protein%3B E%3D0.84 gene gene5066 http://www.ncbi.nlm.nih.gov/gene/?term=RB9057 RB9058 RB9058 RB9058 4834725 4834922 - DNA-binding protein best DB hits: BLAST: embl:CAB88963.1%3B (AL353864) DNA-binding protein.%3B E%3D0.38 gene gene5067 http://www.ncbi.nlm.nih.gov/gene/?term=RB9058 RB9063 RB9063 RB9063 4835065 4836423 + signal peptide gene gene5068 http://www.ncbi.nlm.nih.gov/gene/?term=RB9063 RB9066 RB9066 RB9066 4836501 4839587 + RTX family protein exoprotein best DB hits: BLAST: gb:AAG54838.1%3B AE005229_1 (AE005229) RTX family exoprotein%3B E%3D0.005 swissprot:Q99144%3B PEX5_YARLI PEROXISOMAL TARGETING SIGNAL RECEPTOR%3B E%3D0.056 pir:A72220%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D0.084 COG: TM1695%3B COG0457 TPR-repeat-containing proteins%3B E%3D0.008 PFAM: PF00515%3B TPR Domain%3B E%3D0.28 PF01839%3B FG-GAP repeat%3B E%3D0.0027 gene gene5069 http://www.ncbi.nlm.nih.gov/gene/?term=RB9066 RB9067 RB9067 RB9067 4839661 4839834 + signal peptide gene gene5070 http://www.ncbi.nlm.nih.gov/gene/?term=RB9067 RB9068 RB9068 RB9068 4839822 4840145 - signal peptide gene gene5071 http://www.ncbi.nlm.nih.gov/gene/?term=RB9068 RB9070 RB9070 RB9070 4840267 4841496 + signal peptide best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene5072 http://www.ncbi.nlm.nih.gov/gene/?term=RB9070 RB9072 RB9072 RB9072 4841493 4841639 - hypothetical protein gene gene5073 http://www.ncbi.nlm.nih.gov/gene/?term=RB9072 RB9073 RB9073 RB9073 4841676 4844801 + hypothetical protein best DB hits: PFAM: PF00515%3B TPR Domain%3B E%3D0.83 gene gene5074 http://www.ncbi.nlm.nih.gov/gene/?term=RB9073 RB9075 RB9075 RB9075 4844694 4844849 - hypothetical protein gene gene5075 http://www.ncbi.nlm.nih.gov/gene/?term=RB9075 RB9076 RB9076 ybiT ybiT 4844854 4846761 - ABC transporter ATP-binding protein best DB hits: BLAST: swissprot:P75790%3B YBIT_ECOLI HYPOTHETICAL ABC TRANSPORTER%3B E%3D1e-60 pir:D83399%3B probable ATP-binding component of ABC transporter PA1964%3B E%3D2e-60 swissprot:O05519%3B YDIF_BACSU HYPOTHETICAL ABC TRANSPORTER%3B E%3D2e-60 COG: ybiT%3B COG0488 ATPase components of ABC transporters with duplicated%3B E%3D1e-61 PA1964%3B COG0488 ATPase components of ABC transporters with%3B E%3D2e-61 yheS%3B COG0488 ATPase components of ABC transporters with duplicated%3B E%3D2e-52 PFAM: PF00005%3B ABC transporter%3B E%3D4.7e-40 PF00006%3B ATP synthase alpha/beta family%3B E%3D0.83 PF00005%3B ABC transporter%3B E%3D8.7e-34 gene gene5076 http://www.ncbi.nlm.nih.gov/gene/?term=RB9076 RB9078 RB9078 sucA sucA 4846881 4849790 + 2-oxoglutarate dehydrogenase E1 SucA%3B E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate%3B SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide gene gene5077 http://www.ncbi.nlm.nih.gov/gene/?term=RB9078 RB9079 RB9079 RB9079 4849845 4850678 - hypothetical protein gene gene5078 http://www.ncbi.nlm.nih.gov/gene/?term=RB9079 RB908 RB908 RB908 483544 485055 - hypothetical protein gene gene489 http://www.ncbi.nlm.nih.gov/gene/?term=RB908 RB9080 RB9080 RB9080 4850732 4851769 - hydrolase best DB hits: BLAST: pir:F83600%3B conserved hypothetical protein PA0368 [imported] -%3B E%3D6e-21 gb:AAG24650.1%3B (AF193866) unknown [Alcanivorax borkumensis]%3B E%3D8e-17 pir:F81794%3B conserved hypothetical protein NMA2211 [imported] -%3B E%3D1e-16 COG: PA0368%3B COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold%3B E%3D5e-22 NMB0276%3B COG0429 Predicted hydrolase of the alpha/beta-hydrolase%3B E%3D3e-17 VC2610%3B COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold%3B E%3D7e-15 PFAM: PF00561%3B alpha/beta hydrolase fold%3B E%3D0.0028 gene gene5079 http://www.ncbi.nlm.nih.gov/gene/?term=RB9080 RB9083 RB9083 RB9083 4851788 4852357 + 2'-5' RNA ligase best DB hits: BLAST: swissprot:O66967%3B Y768_AQUAE HYPOTHETICAL PROTEIN AQ_768 -----%3B E%3D1e-17 swissprot:O26683%3B Y583_METTH HYPOTHETICAL PROTEIN MTH583 -----%3B E%3D7e-17 swissprot:Q58963%3B YF68_METJA HYPOTHETICAL PROTEIN MJ1568 -----%3B E%3D1e-14 COG: aq_768%3B COG1514 2'-5' RNA ligase%3B E%3D1e-18 PFAM: PF02834%3B 2'%2C5' RNA ligase%3B E%3D4.1e-11 gene gene5080 http://www.ncbi.nlm.nih.gov/gene/?term=RB9083 RB9084 RB9084 RB9084 4852354 4853430 + glycoprotein endopeptidase PMID: 1885539 best DB hits: BLAST: ddbj:BAB04267.1%3B (AP001508) glycoprotein endopeptidase [Bacillus%3B E%3D3e-64 swissprot:O05518%3B GCP_BACSU PROBABLE O-SIALOGLYCOPROTEIN%3B E%3D4e-62 gb:AAK03322.1%3B (AE006163) Gcp [Pasteurella multocida]%3B E%3D1e-61 COG: BH0548%3B COG0533 Metal-dependent proteases with possible chaperone%3B E%3D3e-65 PFAM: PF00814%3B Glycoprotease%3B E%3D1.8e-113 gene gene5081 http://www.ncbi.nlm.nih.gov/gene/?term=RB9084 RB9087 RB9087 RB9087 4853477 4854022 + hypothetical protein PMID: 21595285 gene gene5082 http://www.ncbi.nlm.nih.gov/gene/?term=RB9087 RB9089 RB9089 pgl pgl 4854131 4854832 - 6-phosphogluconolactonase PMID: 9020051 best DB hits: BLAST: swissprot:P46016%3B 6PGL_ANASP 6-PHOSPHOGLUCONOLACTONASE (6PGL)%3B E%3D5e-36 pir:S76814%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D8e-31 swissprot:P74618%3B 6PGL_SYNY3 6-PHOSPHOGLUCONOLACTONASE (6PGL)%3B E%3D8e-31 COG: sll1479%3B COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate%3B E%3D8e-32 PFAM: PF00256%3B Ribosomal protein L15%3B E%3D0.018 gene gene5083 http://www.ncbi.nlm.nih.gov/gene/?term=RB9089 RB9090 RB9090 panB panB 4854896 4855705 - 3-methyl-2-oxobutanoate hydroxymethyltransferase PMID: 10223988 best DB hits: BLAST: pir:T50554%3B 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC%3B E%3D2e-47 swissprot:Q10505%3B PANB_MYCTU 3-METHYL-2-OXOBUTANOATE%3B E%3D1e-46 pir:T50565%3B 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC%3B E%3D1e-45 COG: Rv2225%3B COG0413 Ketopantoate hydroxymethyltransferase%3B E%3D1e-47 PFAM: PF02548%3B Ketopantoate hydroxymethyltra%3B E%3D3.6e-110 gene gene5084 http://www.ncbi.nlm.nih.gov/gene/?term=RB9090 RB9091 RB9091 atsA atsA 4855732 4857735 - N-acetylgalactosamine 6-sulfatase (GALNS) PMID: 8020961 PMID: 7744061 best DB hits: BLAST: ddbj:BAA04535.1%3B (D17629) N-acetylgalactosamine 6-sulfate%3B E%3D2e-35 gb:AAF63858.1%3B (AF112242) N-acetylgalactosamine-6-sulfate%3B E%3D5e-35 pir:S69336%3B arylsulfatase (EC 3.1.6.1) - Pseudomonas aeruginosa%3B E%3D6e-33 COG: PA0183%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D4e-33 PFAM: PF00884%3B Sulfatase%3B E%3D1.8e-50 gene gene5085 http://www.ncbi.nlm.nih.gov/gene/?term=RB9091 RB9094 RB9094 hasC hasC 4857876 4858808 + UTP-glucose-1-phosphate uridylyltransferase PMID: 7499387 best DB hits: BLAST: pir:A75096%3B UTP--glucose-1-phosphate uridylyltransferase (EC%3B E%3D3e-20 gb:AAD32398.1%3B AAD32398 (AF065404) pXO1-94 [Bacillus anthracis]%3B E%3D4e-19 swissprot:Q54713%3B HASC_STRPY UTP--GLUCOSE-1-PHOSPHATE%3B E%3D2e-17 COG: PAB0771%3B COG1210 UDP-glucose pyrophosphorylase%3B E%3D3e-21 PAB0784%3B COG1209 dTDP-glucose pyrophosphorylase%3B E%3D3e-04 PFAM: PF00483%3B Nucleotidyl transferase%3B E%3D0.014 gene gene5086 http://www.ncbi.nlm.nih.gov/gene/?term=RB9094 RB9096 RB9096 RB9096 4858808 4862176 + UTP-glucose-1-phosphate uridylyltransferase PMID: 8666250 best DB hits: BLAST: swissprot:Q43772%3B UDPG_HORVU UTP--GLUCOSE-1-PHOSPHATE%3B E%3D3e-04 swissprot:P57751%3B UDPG_ARATH UTP--GLUCOSE-1-PHOSPHATE%3B E%3D0.001 swissprot:O64459%3B UDPG_PYRPY UTP--GLUCOSE-1-PHOSPHATE%3B E%3D0.001 gene gene5087 http://www.ncbi.nlm.nih.gov/gene/?term=RB9096 RB9100 RB9100 RB9100 4862220 4863167 - hypothetical protein gene gene5088 http://www.ncbi.nlm.nih.gov/gene/?term=RB9100 RB9101 RB9101 RB9101 4863130 4863681 - hypothetical protein best DB hits: BLAST: pir:E82631%3B conserved hypothetical protein XF1840 [imported] -%3B E%3D4e-08 pir:F81836%3B probable periplasmic protein NMA1457 [imported] -%3B E%3D7e-08 pir:D81130%3B conserved hypothetical protein NMB1030 [imported] -%3B E%3D1e-07 COG: XF1840%3B COG2353 Uncharacterized BCR%3B E%3D4e-09 gene gene5089 http://www.ncbi.nlm.nih.gov/gene/?term=RB9101 RB9103 RB9103 clpB clpB 4863850 4866549 - ClpB protein PMID: 8759846 best DB hits: BLAST: swissprot:P74361%3B CLPB_SYNY3 CLPB PROTEIN ----- pir: S76197%3B E%3D0.0 gb:AAK03788.1%3B (AE006206) ClpB [Pasteurella multocida]%3B E%3D0.0 swissprot:P53533%3B CLPB_SYNP7 CLPB PROTEIN ----- gb: AAB09631.1%3B E%3D0.0 COG: slr1641%3B COG0542 ATPases with chaperone activity%2C ATP-binding domain%3B E%3D0.0 PFAM: PF02861%3B Clp amino terminal domain%3B E%3D1.1e-07 PF02421%3B Ferrous iron transport protein%3B E%3D0.54 PF00004%3B ATPase associated with v%3B E%3D6e-14 gene gene5090 http://www.ncbi.nlm.nih.gov/gene/?term=RB9103 RB9104 RB9104 RB9104 4866559 4866696 - hypothetical protein gene gene5091 http://www.ncbi.nlm.nih.gov/gene/?term=RB9104 RB9105 RB9105 dnaK dnaK 4866720 4868834 - molecular chaperone DnaK PMID: 9061015 best DB hits: BLAST: ddbj:BAA19796.1%3B (D78133) DnaK protein [Rhodopseudomonas sp.]%3B E%3D0.0 gb:AAK00145.1%3B AF222752_1 (AF222752) heat shock protein%3B E%3D0.0 swissprot:P28608%3B DNAK_BORBU DNAK PROTEIN (HEAT SHOCK PROTEIN 70)%3B E%3D0.0 COG: BB0518%3B COG0443 Molecular chaperone%3B E%3D0.0 PFAM: PF00012%3B Hsp70 protein%3B E%3D0 gene gene5092 http://www.ncbi.nlm.nih.gov/gene/?term=RB9105 RB9107 RB9107 pheA pheA 4868997 4870088 + P-protein (PheA) PMID: 1919506 best DB hits: BLAST: swissprot:O67085%3B PHEA_AQUAE P-PROTEIN [INCLUDES: CHORISMATE%3B E%3D2e-40 swissprot:P27603%3B PHEA_PSEST P-PROTEIN [INCLUDES: CHORISMATE%3B E%3D8e-40 gb:AAD47360.1%3B AF038578_3 (AF038578) chorismate mutaseprephenate%3B E%3D1e-38 COG: aq_951_2%3B COG0077 Prephenate dehydratase%3B E%3D9e-40 PFAM: PF00800%3B Prephenate dehydratase%3B E%3D4.5e-50 PF01842%3B ACT domain%3B E%3D3.1e-09 gene gene5093 http://www.ncbi.nlm.nih.gov/gene/?term=RB9107 RB9108 RB9108 moxR moxR 4870326 4871405 - MoxR-related protein PMID: 8997703 best DB hits: BLAST: pir:H82493%3B MoxR-related protein VCA0175 [imported] - Vibrio%3B E%3D4e-67 pir:C75037%3B methanol dehydrogenase regulatory protein (moxr-3)%3B E%3D3e-65 pir:G71146%3B hypothetical protein PH0385 - Pyrococcus horikoshii%3B E%3D6e-65 COG: VCA0175%3B COG0714 MoxR-like ATPases%3B E%3D4e-68 PFAM: PF00004%3B ATPase associated with%3B E%3D0.00052 PF01078%3B Magnesium chelatase%2C subunit%3B E%3D0.00014 gene gene5094 http://www.ncbi.nlm.nih.gov/gene/?term=RB9108 RB9109 RB9109 gyrB gyrB 4871365 4874058 - DNA gyrase subunit B PMID: 2170947 PMID: 2540413 best DB hits: BLAST: swissprot:O84193%3B GYRB_CHLTR DNA GYRASE SUBUNIT B ----- pir:%3B E%3D1e-154 gb:AAC33551.1%3B (AF044267) gyrase subunit B [Chlamydia%3B E%3D1e-153 swissprot:P13364%3B GYRB_PSEPU DNA GYRASE SUBUNIT B ----- pir:%3B E%3D1e-141 COG: CT190%3B COG0187 DNA gyrase (topoisomerase II) B subunit%3B E%3D1e-155 PFAM: PF02518%3B Histidine kinase-%2C DNA gyrase B%3B E%3D2.2e-17 PF00204%3B DNA topoisomerase II (N-termina%3B E%3D6.5e-78 PF00750%3B tRNA synthetases class I (R)%3B E%3D0.49 gene gene5095 http://www.ncbi.nlm.nih.gov/gene/?term=RB9109 RB9110 RB9110 RB9110 4874173 4875924 - serine/threonine protein kinase related protein best DB hits: BLAST: pir:H69064%3B serinethreonine protein kinase related protein -%3B E%3D0.037 embl:CAB57415.1%3B (AL121746) hypothetical protein SCF73.10c%3B E%3D0.075 COG: MTH1485%3B COG1520 Uncharacterized proteins of WD40-like repeat family%3B E%3D0.003 PFAM: PF01011%3B PQQ enzyme repeat%3B E%3D0.25 gene gene5096 http://www.ncbi.nlm.nih.gov/gene/?term=RB9110 RB9112 RB9112 RB9112 4875751 4876041 + thymidylate kinase best DB hits: BLAST: pir:E83275%3B thymidylate kinase PA2962 [imported] - Pseudomonas%3B E%3D0.27 gene gene5097 http://www.ncbi.nlm.nih.gov/gene/?term=RB9112 RB9113 RB9113 pfpI pfpI 4876026 4876598 + intracellular proteinase best DB hits: BLAST: pir:A83103%3B conserved hypothetical protein PA4336 [imported] -%3B E%3D3e-62 gb:AAF26988.1%3B AC018363_33 (AC018363) unknown protein [Arabidopsis%3B E%3D2e-55 gb:AAD56430.1%3B AF158699_2 (AF158699) unknown [Burkholderia%3B E%3D1e-51 COG: PA4336%3B COG0693 intracellular protease/amidase%3B E%3D3e-63 PAB1200%3B COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase%2C%3B E%3D5e-04 Cj0899c%3B COG0693 intracellular protease/amidase%3B E%3D5e-04 PFAM: PF01965%3B ThiJ/PfpI family%3B E%3D2.5e-45 gene gene5098 http://www.ncbi.nlm.nih.gov/gene/?term=RB9113 RB9114 RB9114 RB9114 4876598 4878172 + hypothetical protein gene gene5099 http://www.ncbi.nlm.nih.gov/gene/?term=RB9114 RB9115 RB9115 RB9115 4878182 4878685 + endonuclease best DB hits: BLAST: pir:A82306%3B conserved hypothetical protein VC0580 [imported] -%3B E%3D1e-05 swissprot:Q10819%3B YS98_MYCTU HYPOTHETICAL 14.2 KDA PROTEIN RV2898C%3B E%3D8e-04 pir:H83091%3B conserved hypothetical protein PA4424 [imported] -%3B E%3D0.001 COG: VC0580%3B COG0792 Predicted endonuclease distantly related to archaeal%3B E%3D1e-06 Rv2898c%3B COG0792 Predicted endonuclease distantly related to%3B E%3D8e-05 PA4424%3B COG0792 Predicted endonuclease distantly related to archaeal%3B E%3D1e-04 PFAM: PF02021%3B Uncharacterised protein family%3B E%3D1.4e-18 gene gene5100 http://www.ncbi.nlm.nih.gov/gene/?term=RB9115 RB9116 RB9116 argE argE 4878718 4879983 - acetylornithine deacetylase PMID: 99047594 best DB hits: BLAST: pir:B82973%3B probable peptidic bond hydrolase PA5390 [imported] -%3B E%3D2e-32 gb:AAC82366.1%3B (AF055904) acetylornithine deacetylase%3B ArgE%3B E%3D3e-31 gb:AAK03201.1%3B (AE006153) ArgE [Pasteurella multocida]%3B E%3D8e-27 COG: PA5390%3B COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate%3B E%3D2e-33 BS_argE%3B COG0624 Acetylornithine%3B E%3D8e-12 AF0904%3B COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate%3B E%3D1e-10 PFAM: PF01546%3B Peptidase M20/M25/M40%3B E%3D0.12 gene gene5101 http://www.ncbi.nlm.nih.gov/gene/?term=RB9116 RB9119 RB9119 ykoK ykoK 4879893 4881428 + magnesium transporter Ykok best DB hits: BLAST: ddbj:BAA75383.1%3B (AB013374) Ykok [Bacillus halodurans]%3B E%3D5e-38 ddbj:BAB04230.1%3B (AP001508) magnesium (Mg2+) transporter%3B E%3D5e-38 pir:B81018%3B magnesium transporter NMB1999 [imported] - Neisseria%3B E%3D2e-37 COG: BH0511%3B COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain)%3B E%3D5e-39 PFAM: PF00571%3B CBS domain%3B E%3D0.081 PF01769%3B Divalent cation transporter%3B E%3D7.3e-28 gene gene5102 http://www.ncbi.nlm.nih.gov/gene/?term=RB9119 RB912 RB912 RB912 485013 485501 - ECF-family RNA polymerase sigma factor PMID: 8052622 best DB hits: BLAST: swissprot:P45215%3B YE59_HAEIN PROBABLE RNA POLYMERASE SIGMA FACTOR%3B E%3D0.28 embl:CAB55836.1%3B (AJ249581) Sig15 protein [Streptomyces%3B E%3D0.38 pir:F81002%3B probable sigma factor%2C NMB2144 [imported] - Neisseria%3B E%3D0.79 PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D5.8e-10 gene gene490 http://www.ncbi.nlm.nih.gov/gene/?term=RB912 RB9120 RB9120 RB9120 4881482 4885273 - hypothetical protein best DB hits: BLAST: pir:T36406%3B hypothetical protein SCF34.07 - Streptomyces coelicolor%3B E%3D1e-06 pir:F75417%3B L-sorbosone dehydrogenase - Deinococcus radiodurans%3B E%3D7e-04 pir:C75617%3B probable oxidoreductase - Deinococcus radiodurans%3B E%3D0.022 COG: DR1257%3B COG2133 Glucose/sorbosone dehydrogenases%3B E%3D7e-05 PFAM: PF02837%3B Glycosyl hydrolases family 2%2C%3B E%3D0.00037 PF00034%3B Cytochrome c%3B E%3D0.0092 gene gene5103 http://www.ncbi.nlm.nih.gov/gene/?term=RB9120 RB9126 RB9126 RB9126 4885253 4885417 + hypothetical protein gene gene5104 http://www.ncbi.nlm.nih.gov/gene/?term=RB9126 RB9128 RB9128 RB9128 4885396 4886001 - hypothetical protein gene gene5105 http://www.ncbi.nlm.nih.gov/gene/?term=RB9128 RB913 RB913 RB913 485752 487095 + hypothetical protein gene gene491 http://www.ncbi.nlm.nih.gov/gene/?term=RB913 RB9130 RB9130 RB9130 4886018 4886818 - hypothetical protein gene gene5106 http://www.ncbi.nlm.nih.gov/gene/?term=RB9130 RB9132 RB9132 RB9132 4886727 4888004 + hypothetical protein best DB hits: BLAST: swissprot:P55480%3B Y4HM_RHISN HYPOTHETICAL PROTEIN Y4HM PRECURSOR%3B E%3D7e-52 pir:D69803%3B hypothetical protein yfiI - Bacillus subtilis -----%3B E%3D7e-49 pir:T34927%3B probable oxidoreductase - Streptomyces coelicolor%3B E%3D1e-21 COG: BS_yfiI%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D7e-50 PFAM: PF01408%3B Oxidoreductase%2C NAD-bin%3B E%3D6.1e-30 PF02894%3B Oxidoreductase%2C C-termi%3B E%3D2.5e-09 gene gene5107 http://www.ncbi.nlm.nih.gov/gene/?term=RB9132 RB9133 RB9133 ispD ispD 4888021 4888752 + 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PMID: 10518523 PMID: 11427897 best DB hits: BLAST: swissprot:Q06755%3B ISPD_BACSU%3B E%3D2e-32 pir:S66119%3B conserved hypothetical protein yacM - Bacillus subtilis%3B E%3D7e-32 swissprot:Q9KGF8%3B ISPD_BACHD%3B E%3D4e-28 COG: BS_yacM%3B COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase%3B E%3D7e-33 PFAM: PF01128%3B Uncharacterized protein family UPF00%3B E%3D4.2e-63 gene gene5108 http://www.ncbi.nlm.nih.gov/gene/?term=RB9133 RB9134 RB9134 tyrS tyrS 4888731 4890047 + tyrosyl-tRNA synthetase PMID: 3011073 best DB hits: BLAST: swissprot:P04077%3B SYY_BACCA TYROSYL-TRNA SYNTHETASE%3B E%3D1e-104 swissprot:P00952%3B SYY_BACST TYROSYL-TRNA SYNTHETASE%3B E%3D1e-104 swissprot:P22326%3B SYY1_BACSU TYROSYL-TRNA SYNTHETASE 1%3B E%3D1e-98 COG: BS_tyrS%3B COG0162 Tyrosyl-tRNA synthetase%3B E%3D1e-99 PFAM: PF00579%3B tRNA synthetases class I (W and%3B E%3D2.3e-107 gene gene5109 http://www.ncbi.nlm.nih.gov/gene/?term=RB9134 RB9136 RB9136 xlnC xlnC 4890050 4891843 + endo-1%2C4-beta-xylanase PMID: 8917072 best DB hits: BLAST: pir:T05214%3B hypothetical protein F17I5.50 - Arabidopsis thaliana%3B E%3D1e-14 pir:T00624%3B endo-1%2C4-beta-xylanase homolog T27I1.7 - Arabidopsis%3B E%3D6e-14 ddbj:BAA88262.1%3B (AB008015) similar to xylan endohydrolase%3B E%3D1e-12 gene gene5110 http://www.ncbi.nlm.nih.gov/gene/?term=RB9136 RB9141 RB9141 rsmC rsmC 4891836 4892876 + ribosomal RNA small subunit methyltransferase C PMID: 9873033 best DB hits: BLAST: pir:E72640%3B hypothetical protein APE0557 - Aeropyrum pernix (strain%3B E%3D7e-07 embl:CAC22834.1%3B (AL512963) hypothetical [Sulfolobus%3B E%3D5e-06 swissprot:P37872%3B YBXB_BACSU HYPOTHETICAL 22.5 KDA PROTEIN IN%3B E%3D9e-06 COG: APE0557%3B COG0116 Predicted N6-adenine-specific DNA methylases%3B E%3D7e-08 BS_ybxB%3B COG2813 16S RNA G1207 methylase RsmC%3B E%3D9e-07 MTH1918%3B COG2263 Predicted RNA methylase%3B E%3D0.004 gene gene5111 http://www.ncbi.nlm.nih.gov/gene/?term=RB9141 RB9142 RB9142 titin titin 4892884 4893279 + titin best DB hits: BLAST: embl:CAA62188.1%3B (X90568) Protein sequence and annotation%3B E%3D0.25 pir:I38344%3B titin%2C cardiac muscle [validated] - human%3B E%3D0.25 gene gene5112 http://www.ncbi.nlm.nih.gov/gene/?term=RB9142 RB9143 RB9143 RB9143 4893247 4893513 - hypothetical protein gene gene5113 http://www.ncbi.nlm.nih.gov/gene/?term=RB9143 RB9144 RB9144 RB9144 4893346 4893798 + hypothetical protein gene gene5114 http://www.ncbi.nlm.nih.gov/gene/?term=RB9144 RB9146 RB9146 RB9146 4893681 4895339 - hypothetical protein best DB hits: BLAST: pir:A72314%3B hypothetical protein TM0950 - Thermotoga maritima%3B E%3D0.001 gene gene5115 http://www.ncbi.nlm.nih.gov/gene/?term=RB9146 RB9149 RB9149 RB9149 4895461 4895574 - hypothetical protein gene gene5116 http://www.ncbi.nlm.nih.gov/gene/?term=RB9149 RB9151 RB9151 RB9151 4895546 4895821 + hypothetical protein gene gene5117 http://www.ncbi.nlm.nih.gov/gene/?term=RB9151 RB9155 RB9155 RB9155 4895920 4896042 - hypothetical protein gene gene5118 http://www.ncbi.nlm.nih.gov/gene/?term=RB9155 RB9156 RB9156 RB9156 4896072 4899233 + hypothetical protein best DB hits: BLAST: pir:B70374%3B conserved hypothetical protein aq_854 - Aquifex aeolicus%3B E%3D2e-04 pir:H71261%3B conserved hypothetical protein TP0954 - syphilis%3B E%3D0.21 gb:AAF26789.1%3B AC016829_13 (AC016829) O-linked GlcNAc%3B E%3D0.44 COG: aq_854%3B COG0457 TPR-repeat-containing proteins%3B E%3D2e-05 PFAM: PF00515%3B TPR Domain%3B E%3D0.14 gene gene5119 http://www.ncbi.nlm.nih.gov/gene/?term=RB9156 RB9157 RB9157 RB9157 4899277 4899549 - signal peptide gene gene5120 http://www.ncbi.nlm.nih.gov/gene/?term=RB9157 RB9159 RB9159 RB9159 4899546 4900523 - hypothetical protein gene gene5121 http://www.ncbi.nlm.nih.gov/gene/?term=RB9159 RB916 RB916 RB916 487115 487360 + hypothetical protein gene gene492 http://www.ncbi.nlm.nih.gov/gene/?term=RB916 RB9160 RB9160 RB9160 4900491 4900847 + hypothetical protein gene gene5122 http://www.ncbi.nlm.nih.gov/gene/?term=RB9160 RB9161 RB9161 RB9161 4900858 4901631 - metallopeptidase gene gene5123 http://www.ncbi.nlm.nih.gov/gene/?term=RB9161 RB9164 RB9164 RB9164 4901660 4903453 - thiol-disulfide isomerase best DB hits: BLAST: pir:G70687%3B hypothetical protein Rv1732c - Mycobacterium%3B E%3D5e-13 pir:S75290%3B hypothetical protein sll1289 - Synechocystis sp. (strain%3B E%3D6e-11 gb:AAG19194.1%3B (AE005016) Vng0711c [Halobacterium sp. NRC-1]%3B E%3D1e-10 COG: Rv1732c%3B COG0526 Thiol-disulfide isomerase and thioredoxins%3B E%3D5e-14 DR2242%3B COG0450 Thiol - alkyl hydroperoxide reductases%3B E%3D4e-06 BS_yneN%3B COG0526 Thiol-disulfide isomerase and thioredoxins%3B E%3D5e-06 PFAM: PF00578%3B AhpC/TSA family%3B E%3D0.00037 PF00255%3B Glutathione peroxidase%3B E%3D0.77 gene gene5124 http://www.ncbi.nlm.nih.gov/gene/?term=RB9164 RB9167 RB9167 RB9167 4903417 4903614 - hypothetical protein gene gene5125 http://www.ncbi.nlm.nih.gov/gene/?term=RB9167 RB9168 RB9168 RB9168 4903635 4904627 - nucleotide sugar epimerase PMID: 10531250 best DB hits: BLAST: pir:G70415%3B nucleotide sugar epimerase - Aquifex aeolicus -----%3B E%3D5e-90 ddbj:BAB07428.1%3B (AP001519) nucleotide sugar epimerase%3B E%3D6e-57 gb:AAD50494.1%3B AF172324_12 (AF172324) WbnF [Escherichia coli]%3B E%3D2e-55 COG: aq_1335%3B COG0451 Nucleoside-diphosphate-sugar epimerases%3B E%3D5e-91 XF0255%3B COG1088 dTDP-D-glucose 4%2C6-dehydratase%3B E%3D1e-23 PA1384%3B COG1087 UDP-glucose 4-epimerase%3B E%3D1e-23 PFAM: PF00106%3B short chain dehydrogenase%3B E%3D0.16 PF01370%3B NAD dependent epimerase/dehydratase%3B E%3D8.9e-98 gene gene5126 http://www.ncbi.nlm.nih.gov/gene/?term=RB9168 RB9169 RB9169 wecB wecB 4904739 4905881 + UDP-N-acetylglucosamine 2-epimerase PMID: 8226648 best DB hits: BLAST: pir:A82264%3B UDP-N-acetylglucosamine 2-epimerase VC0917 [imported] -%3B E%3D1e-106 pir:T44828%3B probable UDP-N-acetylglucosamine 2-epimerase (EC%3B E%3D1e-101 swissprot:P27828%3B WECB_ECOLI UDP-N-ACETYLGLUCOSAMINE 2-EPIMERASE%3B E%3D1e-101 COG: VC0917%3B COG0381 UDP-N-acetylglucosamine 2-epimerase%3B E%3D1e-107 PFAM: PF02350%3B UDP-N-acetylglucosamine 2-epimera%3B E%3D1.7e-162 gene gene5127 http://www.ncbi.nlm.nih.gov/gene/?term=RB9169 RB9170 RB9170 RB9170 4905872 4907278 - signal peptide gene gene5128 http://www.ncbi.nlm.nih.gov/gene/?term=RB9170 RB9174 RB9174 RB9174 4907485 4908450 - hypothetical protein best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene5129 http://www.ncbi.nlm.nih.gov/gene/?term=RB9174 RB9176 RB9176 RB9176 4908466 4908651 + hypothetical protein gene gene5130 http://www.ncbi.nlm.nih.gov/gene/?term=RB9176 RB918 RB918 RB918 487595 488473 + integrase PMID: 7607529 best DB hits: BLAST: swissprot:P55632%3B Y4QK_RHISN INTEGRASERECOMBINASE Y4QK%3B E%3D5e-30 prf:2115270D%3B integrase [Weeksella zoohelcum]%3B E%3D3e-29 swissprot:P55429%3B Y4EF_RHISN INTEGRASERECOMBINASE Y4EF%3B E%3D2e-28 COG: MTH893%3B COG0582 Integrase%3B E%3D4e-26 PFAM: PF00589%3B Phage integrase%3B E%3D2.8e-39 gene gene493 http://www.ncbi.nlm.nih.gov/gene/?term=RB918 RB9180 RB9180 RB9180 4908835 4910352 + signal peptide gene gene5131 http://www.ncbi.nlm.nih.gov/gene/?term=RB9180 RB9183 RB9183 exoF exoF 4910352 4912637 + polysaccharide biosynthesis protein PMID: 8439670 best DB hits: BLAST: pir:F70345%3B polysaccharide biosynthesis protein - Aquifex aeolicus%3B E%3D2e-07 pir:S70958%3B otnA protein - Vibrio cholerae ----- embl:%3B E%3D1e-06 swissprot:Q02728%3B EXOF_RHIME EXOPOLYSACCHARIDE PRODUCTION PROTEIN%3B E%3D3e-05 COG: aq_505%3B COG1596 Periplasmic protein involved in polysaccharide%3B E%3D2e-08 yccZ%3B COG1596 Periplasmic protein involved in polysaccharide export%3B E%3D1e-05 PA2234%3B COG1596 Periplasmic protein involved in polysaccharide%3B E%3D0.001 PFAM: PF00159%3B Pancreatic hormone peptide%3B E%3D0.82 gene gene5132 http://www.ncbi.nlm.nih.gov/gene/?term=RB9183 RB9188 RB9188 lysA lysA 4912719 4914002 + diaminopimelate decarboxylase PMID: 6350601 best DB hits: BLAST: gb:AAK05382.1%3B AE006360_11 (AE006360) diaminopimelate%3B E%3D1e-106 swissprot:P31851%3B TABA_PSESZ TABA PROTEIN ----- pir: S27649%3B E%3D6e-92 swissprot:O27390%3B DCDA_METTH DIAMINOPIMELATE DECARBOXYLASE (DAP%3B E%3D7e-59 COG: MTH1335%3B COG0019 Diaminopimelate decarboxylase%3B E%3D7e-60 PFAM: PF02784%3B Pyridoxal-dependent decarboxy%3B E%3D3.1e-40 PF00278%3B Pyridoxal-dependent decarboxy%3B E%3D1.4e-29 gene gene5133 http://www.ncbi.nlm.nih.gov/gene/?term=RB9188 RB919 RB919 RB919 488470 488799 - hypothetical protein gene gene494 http://www.ncbi.nlm.nih.gov/gene/?term=RB919 RB9190 RB9190 RB9190 4914039 4914437 + ferredoxin best DB hits: BLAST: pir:E75319%3B ferredoxin - Deinococcus radiodurans (strain R1) -----%3B E%3D2e-18 pir:C83272%3B Na+-translocating NADH:quinone oxidoreductase%2C subunit%3B E%3D0.002 gb:AAD03987.1%3B (AF079317) xylene monooxygenase electron transfer%3B E%3D0.005 COG: DR2075%3B COG0633 Ferredoxin%3B E%3D2e-19 PA2994%3B COG2871 Na+-transporting NADH:ubiquinone oxidoreductase beta%3B E%3D2e-04 CPn0883%3B COG2871 Na+-transporting NADH:ubiquinone oxidoreductase%3B E%3D0.001 PFAM: PF00111%3B 2Fe-2S iron-sulfur cluster binding d%3B E%3D2.6e-05 gene gene5134 http://www.ncbi.nlm.nih.gov/gene/?term=RB9190 RB9191 RB9191 RB9191 4914516 4914653 + hypothetical protein gene gene5135 http://www.ncbi.nlm.nih.gov/gene/?term=RB9191 RB9192 RB9192 arsA arsA 4914631 4916001 - arylsulphatase A PMID: 7910580 PMID: 1572648 best DB hits: BLAST: embl:CAA36398.1%3B (X52150) arylsulphatase a [Homo sapiens]%3B E%3D2e-27 gb:AAB03341.1%3B (U62317) arylsulfatase A [Homo sapiens]%3B E%3D2e-27 gb:AAF63858.1%3B (AF112242) N-acetylgalactosamine-6-sulfate%3B E%3D7e-27 COG: aslA%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D9e-22 PFAM: PF00884%3B Sulfatase%3B E%3D1.5e-55 gene gene5136 http://www.ncbi.nlm.nih.gov/gene/?term=RB9192 RB9195 RB9195 RB9195 4916023 4916592 - hypothetical protein gene gene5137 http://www.ncbi.nlm.nih.gov/gene/?term=RB9195 RB9196 RB9196 RB9196 4916635 4917975 + secreted glycosyl hydrolase best DB hits: BLAST: pir:T34929%3B hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces%3B E%3D1e-05 embl:CAB94634.1%3B (AL359215) secreted glycosyl hydrolase.%3B E%3D1e-04 gene gene5138 http://www.ncbi.nlm.nih.gov/gene/?term=RB9196 RB9197 RB9197 RB9197 4918018 4918140 + hypothetical protein gene gene5139 http://www.ncbi.nlm.nih.gov/gene/?term=RB9197 RB9198 RB9198 RB9198 4918032 4918208 + hypothetical protein gene gene5140 http://www.ncbi.nlm.nih.gov/gene/?term=RB9198 RB9199 RB9199 RB9199 4918120 4918323 - hypothetical protein gene gene5141 http://www.ncbi.nlm.nih.gov/gene/?term=RB9199 RB92 RB92 phoD phoD 36400 38457 - alkaline phosphatase PMID: 8760916 best DB hits: BLAST: pir:F83157%3B hypothetical protein PA3910 [imported] - Pseudomonas%3B E%3D6e-05 ddbj:BAA06483.1%3B (D30808) unknown [Bacillus subtilis]%3B E%3D1e-04 swissprot:P42251%3B PPBD_BACSU ALKALINE PHOSPHATASE D PRECURSOR%3B E%3D1e-04 gene gene52 http://www.ncbi.nlm.nih.gov/gene/?term=RB92 RB9200 RB9200 nagD nagD 4918369 4919220 - N-acetylglucosamine-6-phoshatase or p-nitrophenyl phosphatase PMID: 97000351 PMID: 99411980 PMID: 2668691 PMID: 2190615 best DB hits: BLAST: embl:CAB65573.1%3B (AL136058) probable%3B E%3D1e-51 ddbj:BAB07147.1%3B (AP001518) p-nitrophenyl phosphatase [Bacillus%3B E%3D4e-43 swissprot:P15302%3B NAGD_ECOLI NAGD PROTEIN ----- pir: B64802%3B E%3D6e-42 COG: BH3428%3B COG0647 Predicted sugar phosphatases of the HAD superfamily%3B E%3D4e-44 VNG0719G%3B COG0647 Predicted sugar phosphatases of the HAD%3B E%3D7e-31 BH1074%3B COG0647 Predicted sugar phosphatases of the HAD superfamily%3B E%3D2e-24 PFAM: PF00702%3B haloacid dehalogenase-like hydr%3B E%3D2.9e-14 gene gene5142 http://www.ncbi.nlm.nih.gov/gene/?term=RB9200 RB9201 RB9201 RB9201 4919456 4925596 - hypothetical protein best DB hits: BLAST: pir:E72310%3B hypothetical protein - Thermotoga maritima (strain MSB8)%3B E%3D8e-06 pir:F83085%3B conserved hypothetical protein PA4489 [imported] -%3B E%3D9e-06 ddbj:BAA12317.1%3B (D84339) murinoglobulin [Cavia porcellus]%3B E%3D9e-05 COG: TM0984%3B COG2373 Large extracellular alpha-helical protein%3B E%3D8e-07 gene gene5143 http://www.ncbi.nlm.nih.gov/gene/?term=RB9201 RB9208 RB9208 RB9208 4925661 4926506 + hypothetical protein PMID: 9163424 best DB hits: BLAST: swissprot:P55478%3B Y4HK_RHISN HYPOTHETICAL 25.4 KD PROTEIN Y4HK%3B E%3D8e-07 gb:AAG60981.1%3B AF322013_100 (AF322013) ID687 [Bradyrhizobium%3B E%3D2e-04 PFAM: PF02056%3B Family 4 glycosyl hydrolase%3B E%3D0.31 PF01925%3B Domain of unknown function DUF8%3B E%3D0.00091 gene gene5144 http://www.ncbi.nlm.nih.gov/gene/?term=RB9208 RB921 RB921 RB921 488758 489126 + hypothetical protein best DB hits: BLAST: gb:AAC23940.1%3B (U93274) FimV [Pseudomonas aeruginosa]%3B E%3D0.78 gene gene495 http://www.ncbi.nlm.nih.gov/gene/?term=RB921 RB9210 RB9210 nifS nifS 4926525 4927712 - NifS-like aminotranfserase- cysteine desulfurase PMID: 8663056 PMID: 10600118 PMID: iscS best DB hits: BLAST: pir:E81852%3B NifS-like aminotranfserase NMA1594 [imported] -%3B E%3D1e-63 gb:AAF62329.1%3B (AE002486) nifS protein [Neisseria meningitidis%3B E%3D9e-63 pir:A71652%3B iron-sulfur cofactor synthesis protein RP486 -%3B E%3D1e-60 COG: NMB1379%3B COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase%3B E%3D8e-64 PFAM: PF00266%3B Aminotransferase class-V%3B E%3D3.4e-70 gene gene5145 http://www.ncbi.nlm.nih.gov/gene/?term=RB9210 RB9212 RB9212 dnl1 dnl1 4927739 4928980 - deoxyribonuclease I precursor (DNase I) PMID: 9469931 best DB hits: BLAST: swissprot:P00639%3B DRN1_BOVIN DEOXYRIBONUCLEASE I PRECURSOR (DNASE%3B E%3D6e-11 pdb:3DNI%3B Deoxyribonuclease I (Dnase I) (E.C.3.1.21.1) -----%3B E%3D6e-11 pdb:1ATN%3B D Chain D%2C Deoxyribonuclease I Complex With Actin%3B E%3D9e-11 PFAM: PF01181%3B Deoxyribonuclease I (DNase I)%3B E%3D0.053 gene gene5146 http://www.ncbi.nlm.nih.gov/gene/?term=RB9212 RB9215 RB9215 sucB sucB 4929311 4930618 + dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex PMID: 9823893 best DB hits: BLAST: swissprot:Q9ZDY4%3B ODO2_RICPR DIHYDROLIPOAMIDE SUCCINYLTRANSFERASE%3B E%3D4e-93 pir:S42875%3B dihydrolipoamide S-succinyltransferase (EC 2.3.1.61) -%3B E%3D7e-92 swissprot:P52993%3B ODO2_ALCEU DIHYDROLIPOAMIDE SUCCINYLTRANSFERASE%3B E%3D7e-92 COG: RP179%3B COG0508 Dihydrolipoamide acyltransferases%3B E%3D4e-94 PFAM: PF00364%3B Biotin-requiring enzyme%3B E%3D5e-17 PF02817%3B e3 binding domain%3B E%3D1.8e-14 PF00198%3B 2-oxo acid dehydrogenases acylt%3B E%3D2.2e-96 gene gene5147 http://www.ncbi.nlm.nih.gov/gene/?term=RB9215 RB9216 RB9216 ank2 ank2 4930706 4931395 - ankyrin repeat-containing protein PMID: 1830053 best DB hits: BLAST: ddbj:BAA86537.1%3B (AB033049) KIAA1223 protein [Homo sapiens]%3B E%3D5e-12 gb:AAF56803.1%3B (AE003766) CG10011 gene product [Drosophila%3B E%3D5e-12 pir:T25412%3B hypothetical protein T28D6.4 - Caenorhabditis elegans%3B E%3D1e-11 COG: XF1640%3B COG0666 Ankyrin repeat proteins%3B E%3D2e-07 PFAM: PF00023%3B Ank repeat%3B E%3D0.00059 gene gene5148 http://www.ncbi.nlm.nih.gov/gene/?term=RB9216 RB9218 RB9218 RB9218 4931428 4932162 - hypothetical protein best DB hits: BLAST: pir:F70418%3B conserved hypothetical protein aq_1365 - Aquifex%3B E%3D9e-24 embl:CAB94036.1%3B (AL358652) conserved hypothetical protein%3B E%3D6e-21 gb:AAB90387.1%3B (AE001045) conserved hypothetical protein%3B E%3D6e-19 COG: aq_1365_1%3B COG0062 Uncharacterized ACR%3B E%3D5e-22 gene gene5149 http://www.ncbi.nlm.nih.gov/gene/?term=RB9218 RB922 RB922 RB922 489145 489258 + hypothetical protein gene gene496 http://www.ncbi.nlm.nih.gov/gene/?term=RB922 RB9220 RB9220 RB9220 4932047 4932877 - hypothetical protein gene gene5150 http://www.ncbi.nlm.nih.gov/gene/?term=RB9220 RB9222 RB9222 mucD mucD 4932617 4934044 + MucD- a secreted serine proteinase PMID: 11761711 PMID: 8606151 best DB hits: BLAST: gb:AAK01318.1%3B (AF190580) MucD [Pseudomonas syringae pv.%3B E%3D0.010 gb:AAB01513.1%3B (U30799) MucD [Azotobacter vinelandii]%3B E%3D0.087 pir:F83550%3B serine proteinase MucD precursor PA0766 [imported] -%3B E%3D0.50 PFAM: PF00595%3B PDZ domain (Also known as DHR or%3B E%3D7.1e-05 gene gene5151 http://www.ncbi.nlm.nih.gov/gene/?term=RB9222 RB9226 RB9226 RB9226 4934175 4934600 - hypothetical protein gene gene5152 http://www.ncbi.nlm.nih.gov/gene/?term=RB9226 RB9227 RB9227 RB9227 4934332 4934649 - ferric iron reductase fhuF PMID: 9990318 best DB hits: BLAST: swissprot:P39405%3B FHUF_ECOLI FERRIC IRON REDUCTase FHUF%3B E%3D0.82 gb:AAG59550.1%3B AE005668_5 (AE005668) orf%2C hypothetical protein%3B E%3D0.85 gene gene5153 http://www.ncbi.nlm.nih.gov/gene/?term=RB9227 RB9228 RB9228 RB9228 4934679 4936592 + hypothetical protein gene gene5154 http://www.ncbi.nlm.nih.gov/gene/?term=RB9228 RB923 RB923 RB923 489282 489677 + signal peptide gene gene497 http://www.ncbi.nlm.nih.gov/gene/?term=RB923 RB9230 RB9230 RB9230 4936673 4936996 + hypothetical protein gene gene5155 http://www.ncbi.nlm.nih.gov/gene/?term=RB9230 RB9231 RB9231 RB9231 4936679 4937008 - hypothetical protein gene gene5156 http://www.ncbi.nlm.nih.gov/gene/?term=RB9231 RB9232 RB9232 RB9232 4937011 4937940 + transposase best DB hits: BLAST: embl:CAB93418.1%3B (AL357524) transposase [Streptomyces%3B E%3D0.60 gene gene5157 http://www.ncbi.nlm.nih.gov/gene/?term=RB9232 RB9233 RB9233 RB9233 4938001 4938246 + signal peptide gene gene5158 http://www.ncbi.nlm.nih.gov/gene/?term=RB9233 RB9235 RB9235 noeI noeI 4938435 4939232 + nodulation protein noeI- methyltransferase PMID: 9163424 best DB hits: BLAST: swissprot:P55473%3B NOEI_RHISN NODULATION PROTEIN NOEI ----- gb:%3B E%3D0.004 gb:AAF67136.1%3B AF228683_3 (AF228683) nodulation protein NoeI%3B E%3D0.006 pir:S73065%3B u0002kb protein - Mycobacterium tuberculosis -----%3B E%3D0.014 COG: sll1456%3B COG0500 SAM-dependent methyltransferases%3B E%3D0.003 gene gene5159 http://www.ncbi.nlm.nih.gov/gene/?term=RB9235 RB9236 RB9236 RB9236 4939229 4939393 + hypothetical protein gene gene5160 http://www.ncbi.nlm.nih.gov/gene/?term=RB9236 RB9237 RB9237 RB9237 4939360 4940193 + glycosyltransferase PMID: 20127862 PMID: 10350455 best DB hits: BLAST: pir:B81318%3B probable two-domain glycosyltransferase Cj1135%3B E%3D1e-20 gb:AAF34140.1%3B (AF167344) glycosyltransferase [Campylobacter%3B E%3D2e-13 gb:AAG43975.1%3B AF215659_3 (AF215659) glycosyltransferase%3B E%3D2e-13 COG: Cj1135%3B COG0463 Glycosyltransferases involved in cell wall%3B E%3D1e-21 aq_1407%3B COG1215 Glycosyltransferases%2C probably involved in cell%3B E%3D0.010 PFAM: PF00535%3B Glycosyl transferase%3B E%3D2.8e-19 gene gene5161 http://www.ncbi.nlm.nih.gov/gene/?term=RB9237 RB9238 RB9238 fucT2 fucT2 4940193 4941143 + fucosyl transferase PMID: 10377135 PMID: 99195826 PMID: 7721792 best DB hits: BLAST: pir:T44328%3B hypothetical protein wblA [imported] - Vibrio cholerae%3B E%3D7e-32 gb:AAD40713.1%3B AF048749_9 (AF048749) fucosyl transferase%3B E%3D1e-18 gb:AAD29863.1%3B (AF093828) alpha-1%2C2-fucosyltransferase%3B E%3D2e-18 PFAM: PF01531%3B Glycosyl transferase 1%3B E%3D2.2e-16 gene gene5162 http://www.ncbi.nlm.nih.gov/gene/?term=RB9238 RB9239 RB9239 RB9239 4941209 4941904 + hypothetical protein best DB hits: BLAST: pir:D70714%3B hypothetical protein Rv1513 - Mycobacterium tuberculosis%3B E%3D2e-04 pir:S73065%3B u0002kb protein - Mycobacterium tuberculosis -----%3B E%3D0.021 embl:CAA11577.1%3B (AJ223833) gsc [Mycobacterium avium subsp.%3B E%3D0.080 gene gene5163 http://www.ncbi.nlm.nih.gov/gene/?term=RB9239 RB924 RB924 RB924 489774 490400 - hypothetical protein gene gene498 http://www.ncbi.nlm.nih.gov/gene/?term=RB924 RB9241 RB9241 RB9241 4941959 4942762 + hypothetical protein best DB hits: BLAST: pir:E83602%3B hypothetical protein PA0343 [imported] - Pseudomonas%3B E%3D4e-07 pir:C82785%3B hypothetical protein XF0607 [imported] - Xylella%3B E%3D0.17 gb:AAF86398.1%3B AF235504_19 (AF235504) FkbM [Streptomyces%3B E%3D0.73 gene gene5164 http://www.ncbi.nlm.nih.gov/gene/?term=RB9241 RB9243 RB9243 RB9243 4942873 4943853 - glycosyltransferase best DB hits: PFAM: PF01668%3B SmpB protein%3B E%3D0.84 PF00535%3B Glycosyl transferase%3B E%3D0.029 gene gene5165 http://www.ncbi.nlm.nih.gov/gene/?term=RB9243 RB9245 RB9245 waaQ waaQ 4944047 4945117 - heptosyl III transferase PMID: 11371519 PMID: 97315213 best DB hits: BLAST: gb:AAD37767.1%3B AF146532_7 (AF146532) heptosyl III%3B E%3D9e-13 gb:AAK03386.1%3B (AE006169) OpsX [Pasteurella multocida]%3B E%3D3e-07 embl:CAA07672.1%3B (AJ007747) heptosyltransferase%3B E%3D5e-07 COG: HI0261%3B COG0859 ADP-heptose:LPS heptosyltransferase%3B E%3D3e-07 PFAM: PF01075%3B Glycosyltransferase 9 (%3B E%3D6.9e-06 gene gene5166 http://www.ncbi.nlm.nih.gov/gene/?term=RB9245 RB9249 RB9249 RB9249 4945139 4947571 - hypothetical protein gene gene5167 http://www.ncbi.nlm.nih.gov/gene/?term=RB9249 RB925 RB925 RB925 490025 491152 - transposase PMID: 9163424 best DB hits: BLAST: swissprot:P55631%3B Y4QJ_RHISN TRANSPOSASE Y4QJ -----%3B E%3D1e-38 prf:2115270C%3B transposase [Weeksella zoohelcum]%3B E%3D6e-35 pir:S23782%3B transposase tnpA (insertion sequence IS91) - Escherichia%3B E%3D4e-13 gene gene499 http://www.ncbi.nlm.nih.gov/gene/?term=RB925 RB9255 RB9255 gidA gidA 4947533 4949536 + tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA GidA%3B glucose-inhibited cell division protein A%3B involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs gene gene5168 http://www.ncbi.nlm.nih.gov/gene/?term=RB9255 RB9256 RB9256 RB9256 4949533 4950621 + SAM-depedent methyltransferase best DB hits: BLAST: pir:C83451%3B conserved hypothetical protein PA1563 [imported] -%3B E%3D0.089 pir:A82768%3B conserved hypothetical protein XF0748 [imported] -%3B E%3D0.11 COG: PA1563%3B COG2933 Predicted SAM-dependent methyltransferase%3B E%3D0.008 gene gene5169 http://www.ncbi.nlm.nih.gov/gene/?term=RB9256 RB9260 RB9260 RB9260 4951242 4952522 + SD repeat-containing protein PMID: 9884231 best DB hits: BLAST: embl:CAA06650.1%3B (AJ005645) sdrc [Staphylococcus aureus]%3B E%3D0.21 gene gene5170 http://www.ncbi.nlm.nih.gov/gene/?term=RB9260 RB9261 RB9261 RB9261 4952589 4953827 + hypothetical protein best DB hits: BLAST: ddbj:BAA37082.1%3B (AB022095) ORF2 [Streptomyces griseus]%3B E%3D5e-45 embl:CAC04221.1%3B (AL391515) conserved hypothetical protein%3B E%3D9e-35 pir:G69070%3B coenzyme F390 synthetase I - Methanobacterium%3B E%3D0.004 COG: MTH1528%3B COG1541 Coenzyme F390 synthetase%3B E%3D4e-04 PFAM: PF00031%3B Cystatin domain%3B E%3D0.0015 gene gene5171 http://www.ncbi.nlm.nih.gov/gene/?term=RB9261 RB9262 RB9262 RB9262 4953841 4955331 + NAD-dependent aldehyde dehydrogenase best DB hits: BLAST: embl:CAC04220.1%3B (AL391515) conserved hypothetical protein%3B E%3D1e-21 ddbj:BAA37083.1%3B (AB022095) ORF3 [Streptomyces griseus]%3B E%3D8e-13 pir:E70961%3B hypothetical protein Rv0223c - Mycobacterium%3B E%3D4e-06 COG: Rv0223c%3B COG1012 NAD-dependent aldehyde dehydrogenases%3B E%3D3e-07 PFAM: PF00171%3B Aldehyde dehydrogenase%3B E%3D0.21 gene gene5172 http://www.ncbi.nlm.nih.gov/gene/?term=RB9262 RB9266 RB9266 RB9266 4955344 4955742 + hypothetical protein gene gene5173 http://www.ncbi.nlm.nih.gov/gene/?term=RB9266 RB9268 RB9268 flbD flbD 4955675 4955920 + flagellar protein (flbD)-like protein best DB hits: BLAST: pir:A72347%3B hypothetical protein TM0675 - Thermotoga maritima%3B E%3D1e-08 ddbj:BAB06167.1%3B (AP001515) BH2448~~unknown conserved protein in%3B E%3D4e-05 pir:B70135%3B flagellar protein (flbD) homolog - Lyme disease%3B E%3D3e-04 COG: TM0675%3B COG1582 Uncharacterized protein%2C possibly involved in%3B E%3D1e-09 gene gene5174 http://www.ncbi.nlm.nih.gov/gene/?term=RB9268 RB9269 RB9269 pomA pomA 4955939 4956700 + chemotaxis pomA protein PMID: 99254111 best DB hits: BLAST: swissprot:P46826%3B YTXD_BACME HYPOTHETICAL 29.3 KD PROTEIN IN CCPA%3B E%3D9e-35 swissprot:O06873%3B POMA_VIBAL CHEMOTAXIS POMA PROTEIN -----%3B E%3D2e-31 gb:AAD15904.1%3B (AF069391) sodium-driven polar flagellar protein%3B E%3D3e-31 COG: BS_ytxD%3B COG1291 Flagellar motor component%3B E%3D5e-32 PFAM: PF01618%3B MotA/TolQ/ExbB proton channel famil%3B E%3D0.0002 gene gene5175 http://www.ncbi.nlm.nih.gov/gene/?term=RB9269 RB927 RB927 RB927 491254 491937 - integrase PMID: 7607529 best DB hits: BLAST: swissprot:P55632%3B Y4QK_RHISN INTEGRASERECOMBINASE Y4QK%3B E%3D5e-23 swissprot:P55429%3B Y4EF_RHISN INTEGRASERECOMBINASE Y4EF%3B E%3D1e-22 prf:2115270D%3B integrase [Weeksella zoohelcum]%3B E%3D4e-15 COG: PAB0255%3B COG0582 Integrase%3B E%3D5e-15 PFAM: PF00589%3B Phage integrase%3B E%3D2.4e-13 gene gene500 http://www.ncbi.nlm.nih.gov/gene/?term=RB927 RB9271 RB9271 motB motB 4956700 4957455 + MotB-like protein PMID: 7934817 PMID: 9387221 PMID: 1447140 best DB hits: BLAST: swissprot:P39064%3B YTXE_BACSU HYPOTHETICAL 27.6 KD PROTEIN IN ACUC%3B E%3D2e-10 gb:AAB94398.1%3B (U91841) MotB homolog [Bacillus firmus]%3B E%3D3e-09 ddbj:BAB06958.1%3B (AP001518) BH3239~~unknown conserved protein%3B E%3D2e-07 COG: BS_ytxE%3B COG1360 Flagellar motor protein%3B E%3D2e-11 PA0973%3B COG2885 Outer membrane protein and related%3B E%3D5e-05 PFAM: PF00691%3B OmpA family%3B E%3D1.4e-11 gene gene5176 http://www.ncbi.nlm.nih.gov/gene/?term=RB9271 RB9273 RB9273 RB9273 4957465 4958022 + dihydrolipoamide acetyltransferase PMID: 10368162 best DB hits: BLAST: gb:AAC05584.1%3B (AF006075) dihydrolipoamide acetyltransferase%3B E%3D0.090 swissprot:O31550%3B ACOC_BACSU DIHYDROLIPOAMIDE ACETYLTRANSFERASE%3B E%3D0.090 COG: BS_acoC%3B COG0508 Dihydrolipoamide acyltransferases%3B E%3D0.009 gene gene5177 http://www.ncbi.nlm.nih.gov/gene/?term=RB9273 RB9275 RB9275 fliN fliN 4958039 4958464 + flagellar motor switch protein fliN (fragment) PMID: 2656645 PMID: 2651416 best DB hits: BLAST: swissprot:P35539%3B FLIN_ERWCA FLAGELLAR MOTOR SWITCH PROTEIN FLIN%3B E%3D5e-16 swissprot:P24073%3B FLIY_BACSU FLAGELLAR MOTOR SWITCH PROTEIN FLIY%3B E%3D8e-16 swissprot:P26419%3B FLIN_SALTY FLAGELLAR MOTOR SWITCH PROTEIN FLIN%3B E%3D2e-15 COG: BS_fliY_2%3B COG1886 Flagellar motor switch/type III secretory pathway%3B E%3D6e-17 PFAM: PF01052%3B Surface presentation of antigens (SP%3B E%3D2.5e-25 gene gene5178 http://www.ncbi.nlm.nih.gov/gene/?term=RB9275 RB9276 RB9276 RB9276 4958461 4959162 + bifunctional aspartokinase/homoserine dehydrogenase 2 best DB hits: BLAST: swissprot:P49080%3B AKH2_MAIZE BIFUNCTIONAL ASPARTOKINASEHOMOSERINE%3B E%3D0.43 gene gene5179 http://www.ncbi.nlm.nih.gov/gene/?term=RB9276 RB9278 RB9278 phr phr 4959131 4961644 - deoxyribodipyrimidine photolyase PMID: 7813451 PMID: 2668276 best DB hits: BLAST: pir:A83065%3B hypothetical protein PA4657 [imported] - Pseudomonas%3B E%3D4e-47 swissprot:P12769%3B PHR_METTH DEOXYRIBODIPYRIMIDINE PHOTOLYASE (DNA%3B E%3D6e-41 swissprot:P34205%3B PHR_CARAU DEOXYRIBODIPYRIMIDINE PHOTOLYASE (DNA%3B E%3D4e-37 COG: PA4657%3B COG3380 Predicted NAD/FAD-dependent oxidoreductase%3B E%3D3e-48 MTH904%3B COG0415 Deoxyribodipyrimidine photolyase%3B E%3D5e-42 sll1135%3B COG3380 Predicted NAD/FAD-dependent oxidoreductase%3B E%3D1e-21 PFAM: PF00875%3B DNA photolyase%3B E%3D6.3e-06 PF02254%3B KTN NAD-binding domain%3B E%3D0.19 PF01266%3B D-amino acid oxidase%3B E%3D0.0088 gene gene5180 http://www.ncbi.nlm.nih.gov/gene/?term=RB9278 RB9280 RB9280 pds pds 4961732 4963150 - phytoene dehydrogenase PMID: 97227932 PMID: 1594600 best DB hits: BLAST: pir:T35402%3B probable phytoene dehydrogenase - Streptomyces%3B E%3D7e-25 pir:T10701%3B probable phytoene dehydrogenase (EC 1.3.-.-) - green%3B E%3D3e-18 embl:CAA60479.1%3B (X86783) Phytoene desaturase [Haematococcus%3B E%3D1e-15 COG: slr1254%3B COG3349 Uncharacterized ACR%3B E%3D5e-14 PFAM: PF01593%3B Flavin containing amine oxidase%3B E%3D0.51 PF01494%3B FAD binding domain%3B E%3D0.00029 PF01266%3B D-amino acid oxidase%3B E%3D0.019 gene gene5181 http://www.ncbi.nlm.nih.gov/gene/?term=RB9280 RB9283 RB9283 crtB crtB 4963147 4964157 - phytoene synthase PMID: 1537409 best DB hits: BLAST: pir:T35400%3B probable phytoene synthase - Streptomyces coelicolor%3B E%3D5e-25 pir:A81118%3B phytoene synthase%2C probable NMB1130%2C NMB1168 [imported]%3B E%3D3e-21 swissprot:P37269%3B CRTB_SYNP7 PHYTOENE SYNTHASE ----- pir:%3B E%3D5e-21 COG: NMB1130%3B COG1562 Phytoene/squalene synthetase%3B E%3D3e-22 PFAM: PF00494%3B Squalene/phytoene synthase%3B E%3D0.0026 gene gene5182 http://www.ncbi.nlm.nih.gov/gene/?term=RB9283 RB9284 RB9284 ctrB ctrB 4964154 4965053 - phytoene synthase PMID: 20175755 PMID: 1537409 best DB hits: BLAST: pir:H81074%3B phytoene synthase-related protein NMB1521 [imported] -%3B E%3D6e-38 pir:D81868%3B probable transferase NMA1721 [imported] - Neisseria%3B E%3D2e-37 pir:T35399%3B probable phytoene synthase - Streptomyces coelicolor%3B E%3D2e-25 COG: NMB1521%3B COG1562 Phytoene/squalene synthetase%3B E%3D5e-39 PFAM: PF00494%3B Squalene/phytoene synthase%3B E%3D2.8e-23 gene gene5183 http://www.ncbi.nlm.nih.gov/gene/?term=RB9284 RB9288 RB9288 lytB lytB 4965373 4966332 + LytB protein PMID: 11818558 best DB hits: BLAST: pir:G83076%3B LytB protein PA4557 [imported] - Pseudomonas aeruginosa%3B E%3D4e-81 gb:AAD55804.1%3B (AF027189) LytB [Acinetobacter sp. BD413]%3B E%3D1e-80 pir:G82293%3B lytB protein VC0685 [imported] - Vibrio cholerae (group%3B E%3D7e-77 COG: PA4557%3B COG0761 Penicillin tolerance protein%3B E%3D4e-82 PFAM: PF02401%3B LytB protein%3B E%3D2.4e-132 gene gene5184 http://www.ncbi.nlm.nih.gov/gene/?term=RB9288 RB9289 RB9289 RB9289 4966456 4969701 - hypothetical protein best DB hits: BLAST: ddbj:BAA91540.1%3B (AK001182) unnamed protein product [Homo sapiens]%3B E%3D9e-08 embl:CAB98267.1%3B (AJ276171) ASPIC [Homo sapiens]%3B E%3D1e-07 embl:CAB98268.1%3B (AJ276171) ASPIC [Homo sapiens] ----- embl:%3B E%3D1e-07 COG: nfrA%3B COG0457 TPR-repeat-containing proteins%3B E%3D0.002 gene gene5185 http://www.ncbi.nlm.nih.gov/gene/?term=RB9289 RB9292 RB9292 glgX glgX 4969727 4971928 - glycogen operon protein glgX-2 PMID: 97061201 PMID: 10333591 PMID: 10669803 best DB hits: BLAST: pir:S77094%3B glycogen operon protein (EC 3.2.1.-) glgX-2 -%3B E%3D1e-149 pir:S74546%3B glycogen operon protein (EC 3.2.1.-) glgX-1 -%3B E%3D1e-139 embl:CAB92884.1%3B (AL356932) glycogen debranching enzyme.%3B E%3D1e-136 COG: slr1857%3B COG1523 Pullulanase and related glycosidases%3B E%3D1e-151 DR0464%3B COG0296 1%2C4-alpha-glucan branching enzyme%3B E%3D3e-17 DR0405%3B COG1523 Pullulanase and related glycosidases%3B E%3D3e-12 PFAM: PF02922%3B Isoamylase N-terminal domain%3B E%3D1.3e-22 PF00128%3B Alpha amylase%2C catalytic domain%3B E%3D9.7e-21 gene gene5186 http://www.ncbi.nlm.nih.gov/gene/?term=RB9292 RB9294 RB9294 RB9294 4972084 4972386 - hypothetical protein gene gene5187 http://www.ncbi.nlm.nih.gov/gene/?term=RB9294 RB9296 RB9296 RB9296 4972307 4972768 + hypothetical protein gene gene5188 http://www.ncbi.nlm.nih.gov/gene/?term=RB9296 RB9298 RB9298 RB9298 4972886 4973878 - hypothetical protein best DB hits: PFAM: PF00114%3B Pilin (bacterial filament)%3B E%3D0.038 gene gene5189 http://www.ncbi.nlm.nih.gov/gene/?term=RB9298 RB93 RB93 RB93 38470 39441 - signal peptide gene gene53 http://www.ncbi.nlm.nih.gov/gene/?term=RB93 RB930 RB930 RB930 492023 492148 - hypothetical protein gene gene501 http://www.ncbi.nlm.nih.gov/gene/?term=RB930 RB9301 RB9301 RB9301 4974088 4974270 - hypothetical protein gene gene5190 http://www.ncbi.nlm.nih.gov/gene/?term=RB9301 RB9304 RB9304 rpmE rpmE 4974378 4974623 + 50S ribosomal protein L31 PMID: 339950 best DB hits: BLAST: pir:C81433%3B 50S ribosomal protein L31 Cj0155c [imported] -%3B E%3D2e-17 swissprot:O66075%3B RL31_TREPA 50S RIBOSOMAL PROTEIN L31 -----%3B E%3D9e-17 swissprot:P45834%3B RL31_MYCLE 50S RIBOSOMAL PROTEIN L31 -----%3B E%3D5e-16 COG: Cj0155c%3B COG0254 Ribosomal protein L31%3B E%3D2e-18 PFAM: PF01197%3B Ribosomal protein L31%3B E%3D1.6e-37 gene gene5191 http://www.ncbi.nlm.nih.gov/gene/?term=RB9304 RB9305 RB9305 prfA prfA 4974620 4975702 + peptide chain release factor 1 PMID: 9353933 PMID: 8662205 best DB hits: BLAST: swissprot:P45872%3B RF1_BACSU PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1)%3B E%3D1e-80 swissprot:P43917%3B RF1_HAEIN PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1)%3B E%3D2e-79 gb:AAK02639.1%3B (AE006091) PrfA [Pasteurella multocida]%3B E%3D6e-79 COG: BS_prfA%3B COG0216 Protein chain release factor A%3B E%3D1e-81 PFAM: PF00472%3B Peptidyl-tRNA hydrolase domain%3B E%3D2.2e-66 gene gene5192 http://www.ncbi.nlm.nih.gov/gene/?term=RB9305 RB9306 RB9306 hemK hemK 4975706 4976596 + hemK protein PMID: 11805295 best DB hits: BLAST: pir:A82109%3B hemK protein VC2178 [imported] - Vibrio cholerae (group%3B E%3D4e-33 ddbj:BAB07493.1%3B (AP001519) protoporphyrinogen oxidase [Bacillus%3B E%3D7e-33 swissprot:P45873%3B HEMK_BACSU HEMK PROTEIN HOMOLOG ----- pir:%3B E%3D8e-32 COG: VC2178%3B COG2890 Predicted rRNA or tRNA methylase%3B E%3D4e-34 PFAM: PF02390%3B methyltransferase%3B E%3D0.19 gene gene5193 http://www.ncbi.nlm.nih.gov/gene/?term=RB9306 RB9307 RB9307 RB9307 4976727 4976945 + hypothetical protein gene gene5194 http://www.ncbi.nlm.nih.gov/gene/?term=RB9307 RB9308 RB9308 RB9308 4976960 4978849 - hypothetical protein best DB hits: PFAM: PF02321%3B Outer membrane efflux protein%3B E%3D5.8e-06 gene gene5195 http://www.ncbi.nlm.nih.gov/gene/?term=RB9308 RB931 RB931 RB931 492159 492278 + hypothetical protein gene gene502 http://www.ncbi.nlm.nih.gov/gene/?term=RB931 RB9310 RB9310 RB9310 4978793 4979035 + hypothetical protein gene gene5196 http://www.ncbi.nlm.nih.gov/gene/?term=RB9310 RB9311 RB9311 RB9311 4979077 4980462 + hypothetical protein best DB hits: PFAM: PF00364%3B Biotin-requiring enzyme%3B E%3D0.13 PF02749%3B Quinolinate phosphoribosyl tran%3B E%3D0.19 gene gene5197 http://www.ncbi.nlm.nih.gov/gene/?term=RB9311 RB9313 RB9313 RB9313 4980456 4981586 + copper efflux system protein cusB (precursor) PMID: 11004187 best DB hits: BLAST: swissprot:P77239%3B YLCD_ECOLI HYPOTHETICAL 44.3 KDA PROTEIN IN%3B E%3D0.003 gb:AAG54907.1%3B AE005237_3 (AE005237) resistance protein%3B E%3D0.003 pir:A72386%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D0.037 COG: ylcD%3B COG0845 Membrane-fusion protein%3B E%3D3e-04 PFAM: PF00364%3B Biotin-requiring enzyme%3B E%3D0.0042 PF00529%3B HlyD family secretion protein%3B E%3D0.005 PF00364%3B Biotin-requiring enzyme%3B E%3D0.0068 gene gene5198 http://www.ncbi.nlm.nih.gov/gene/?term=RB9313 RB9315 RB9315 RB9315 4981583 4983793 + hypothetical protein best DB hits: BLAST: pir:G82300%3B conserved hypothetical protein VC0628 [imported] -%3B E%3D0.002 pir:F70091%3B hypothetical protein yydH - Bacillus subtilis -----%3B E%3D0.14 pir:D70385%3B hypothetical protein aq_986 - Aquifex aeolicus -----%3B E%3D0.31 COG: VC0628%3B COG0845 Membrane-fusion protein%3B E%3D2e-04 PFAM: PF02163%3B Sterol-regulatory element bindi%3B E%3D6.4e-05 gene gene5199 http://www.ncbi.nlm.nih.gov/gene/?term=RB9315 RB9317 RB9317 RB9317 4983811 4989579 - threonine/tyrosine-specific protein kinase PMID: 99000809 PMID: 97000351 best DB hits: BLAST: pir:G71532%3B probable threoninetyrosine-specific protein kinase (EC%3B E%3D4e-30 gb:AAF73573.1%3B (AE002326) serinethreonine protein kinase%3B E%3D3e-27 embl:CAB45034.1%3B (AL078635) WD-repeat containing protein%3B E%3D3e-26 COG: CT301_1%3B COG0515 Serine/threonine protein kinases%3B E%3D3e-31 sll0163%3B COG2319 WD40 repeat protein%3B E%3D1e-19 Rv1266c%3B COG0515 Serine/threonine protein kinases%3B E%3D1e-19 PFAM: PF00069%3B Protein kinase domain%3B E%3D1.1e-26 PF00400%3B WD domain%2C G-beta repeat%3B E%3D7.5e-06 gene gene5200 http://www.ncbi.nlm.nih.gov/gene/?term=RB9317 RB932 RB932 RB932 492306 492716 + hypothetical protein gene gene503 http://www.ncbi.nlm.nih.gov/gene/?term=RB932 RB9320 RB9320 RB9320 4989569 4992178 - hypothetical protein best DB hits: PFAM: PF00956%3B Nucleosome assembly protein (NAP)%3B E%3D0.78 gene gene5201 http://www.ncbi.nlm.nih.gov/gene/?term=RB9320 RB9322 RB9322 RB9322 4992331 4992459 - hypothetical protein gene gene5202 http://www.ncbi.nlm.nih.gov/gene/?term=RB9322 RB9324 RB9324 RB9324 4992474 4993277 + signal peptide gene gene5203 http://www.ncbi.nlm.nih.gov/gene/?term=RB9324 RB9326 RB9326 RB9326 4993426 4994358 + hypothetical protein PMID: 20222556 best DB hits: BLAST: pir:H81856%3B hypothetical protein NMA1628 [imported] - Neisseria%3B E%3D1e-17 pir:C81085%3B conserved hypothetical protein NMB1417 [imported] -%3B E%3D4e-17 embl:CAC01390.1%3B (AJ131360) WlaX protein [Campylobacter jejuni]%3B E%3D7e-17 COG: NMB1417%3B COG3298 Predicted 3'-5' exonuclease related to the%3B E%3D4e-18 gene gene5204 http://www.ncbi.nlm.nih.gov/gene/?term=RB9326 RB9327 RB9327 RB9327 4994375 4995406 + hypothetical protein gene gene5205 http://www.ncbi.nlm.nih.gov/gene/?term=RB9327 RB9329 RB9329 RB9329 4995491 4996729 + hypothetical protein best DB hits: BLAST: embl:CAB45034.1%3B (AL078635) WD-repeat containing protein%3B E%3D1e-12 swissprot:Q00808%3B HET1_PODAN VEGETATIBLE INCOMPATIBILITY PROTEIN%3B E%3D5e-12 gb:AAG40737.1%3B AF299085_1 (AF299085) Bap1 [Myxococcus xanthus]%3B E%3D3e-09 COG: slr0143_2%3B COG2319 WD40 repeat protein%3B E%3D2e-09 PFAM: PF00400%3B WD domain%2C G-beta repeat%3B E%3D0.87 gene gene5206 http://www.ncbi.nlm.nih.gov/gene/?term=RB9329 RB933 RB933 RB933 492825 493451 - hypothetical protein gene gene504 http://www.ncbi.nlm.nih.gov/gene/?term=RB933 RB9330 RB9330 RB9330 4996801 5002071 + fibrinogen-binding protein PMID: 99098700 PMID: 98261511 best DB hits: BLAST: pir:T28679%3B fibrinogen-binding protein homolog - Staphylococcus aureus%3B E%3D9e-46 gb:AAF72509.1%3B AF245041_1 (AF245041) cell-surface adhesin%3B E%3D1e-37 embl:CAB75732.1%3B (Y18653) bone sialoprotein-binding protein%3B E%3D6e-24 gene gene5207 http://www.ncbi.nlm.nih.gov/gene/?term=RB9330 RB9337 RB9337 RB9337 5002119 5002295 + hypothetical protein gene gene5208 http://www.ncbi.nlm.nih.gov/gene/?term=RB9337 RB9338 RB9338 fae fae 5002305 5002853 + formaldehyde-activating enzyme PMID: 11073907 PMID: 9651254 best DB hits: BLAST: pir:D69063%3B conserved hypothetical protein MTH1474 -%3B E%3D2e-16 gb:AAB89943.1%3B (AE001014) D-arabino 3-hexulose 6-phosphate%3B E%3D7e-13 gb:AAG32954.1%3B (AF032114) formaldehyde-activating enzyme%3B E%3D3e-10 COG: MTH1474_1%3B COG1795 Uncharacterized archaeal domain%3B E%3D1e-17 gene gene5209 http://www.ncbi.nlm.nih.gov/gene/?term=RB9338 RB934 RB934 RB934 493076 494203 - transposase PMID: 7607529 best DB hits: BLAST: swissprot:P55631%3B Y4QJ_RHISN TRANSPOSASE Y4QJ -----%3B E%3D9e-39 prf:2115270C%3B transposase [Weeksella zoohelcum]%3B E%3D7e-35 pir:S23782%3B transposase tnpA (insertion sequence IS91) - Escherichia%3B E%3D4e-14 gene gene505 http://www.ncbi.nlm.nih.gov/gene/?term=RB934 RB9340 RB9340 cpcE cpcE 5002928 5003644 - phycocyanin alpha phycocyanobilin lyase CpcE PMID: 9882677 best DB hits: BLAST: pir:S74670%3B hypothetical protein sll1663 - Synechocystis sp. (strain%3B E%3D0.069 pir:D69108%3B phycocyanin alpha phycocyanobilin lyase CpcE -%3B E%3D0.20 pir:F83358%3B hypothetical protein PA2293 [imported] - Pseudomonas%3B E%3D0.35 COG: sll1663%3B COG1413 Phycocyanin alpha-subunit phycocyanobilin lyase and%3B E%3D0.007 gene gene5210 http://www.ncbi.nlm.nih.gov/gene/?term=RB9340 RB9342 RB9342 RB9342 5003578 5003808 + hypothetical protein gene gene5211 http://www.ncbi.nlm.nih.gov/gene/?term=RB9342 RB9343 RB9343 RB9343 5003789 5003968 + hypothetical protein gene gene5212 http://www.ncbi.nlm.nih.gov/gene/?term=RB9343 RB9344 RB9344 RB9344 5003979 5008139 + SWF/SNF family helicase best DB hits: BLAST: pir:D83545%3B probable helicase PA0799 [imported] - Pseudomonas%3B E%3D2e-96 embl:CAA67095.1%3B (X98455) SNF [Bacillus cereus]%3B E%3D8e-90 embl:CAB60181.1%3B (AL132824) helicase [Streptomyces%3B E%3D1e-86 COG: PA0799%3B COG0553 Superfamily II DNA/RNA helicases%2C SNF2 family%3B E%3D2e-97 PFAM: PF02561%3B Flagellar protein FliS%3B E%3D0.63 PF02156%3B Glycosyl hydrolase 26%3B E%3D0.62 PF00176%3B SNF2 and others N-terminal dom%3B E%3D1.5e-71 gene gene5213 http://www.ncbi.nlm.nih.gov/gene/?term=RB9344 RB9345 RB9345 RB9345 5008092 5008376 - hypothetical protein gene gene5214 http://www.ncbi.nlm.nih.gov/gene/?term=RB9345 RB9346 RB9346 RB9346 5008335 5008550 + hypothetical protein gene gene5215 http://www.ncbi.nlm.nih.gov/gene/?term=RB9346 RB9347 RB9347 RB9347 5008394 5008600 - hypothetical protein gene gene5216 http://www.ncbi.nlm.nih.gov/gene/?term=RB9347 RB9348 RB9348 RB9348 5008536 5008826 - hypothetical protein gene gene5217 http://www.ncbi.nlm.nih.gov/gene/?term=RB9348 RB9349 RB9349 RB9349 5008812 5009219 + hypothetical protein gene gene5218 http://www.ncbi.nlm.nih.gov/gene/?term=RB9349 RB9350 RB9350 RB9350 5009312 5011513 - hypothetical protein gene gene5219 http://www.ncbi.nlm.nih.gov/gene/?term=RB9350 RB9351 RB9351 RB9351 5011447 5011785 + hypothetical protein gene gene5220 http://www.ncbi.nlm.nih.gov/gene/?term=RB9351 RB9352 RB9352 RB9352 5011516 5011746 - polypeptide HsdS PMID: 2585490 best DB hits: BLAST: embl:CAA35604.1%3B (X17591) HsdS polypeptide%2C part of CfrA family%3B E%3D0.17 pir:NDECAS%3B type I site-specific deoxyribonuclease (EC 3.1.21.3)%3B E%3D0.17 swissprot:P19705%3B T1SE_ECOLI TYPE I RESTRICTION ENZYME ECOEI%3B E%3D0.17 gene gene5221 http://www.ncbi.nlm.nih.gov/gene/?term=RB9352 RB9353 RB9353 RB9353 5011753 5011917 - modification methylase- transcriptional regulator PMID: 7607524 best DB hits: BLAST: swissprot:P50196%3B MTE8_ECOLI MODIFICATION METHYLASE ECO47II%3B E%3D0.004 swissprot:P55393%3B Y4CK_RHISN REPLICATION PROTEIN A%3B E%3D0.35 gene gene5222 http://www.ncbi.nlm.nih.gov/gene/?term=RB9353 RB9354 RB9354 RB9354 5011855 5012406 + hypothetical protein gene gene5223 http://www.ncbi.nlm.nih.gov/gene/?term=RB9354 RB9356 RB9356 RB9356 5012382 5012771 - hypothetical protein gene gene5224 http://www.ncbi.nlm.nih.gov/gene/?term=RB9356 RB9359 RB9359 rtcA rtcA 5012956 5014053 - RNA 3'-terminal-phosphate cyclase catalyzes the conversion of terminal3'-phosphate of RNA to the 2'%2C3'-cyclicphosphodiester gene gene5225 http://www.ncbi.nlm.nih.gov/gene/?term=RB9359 RB936 RB936 RB936 494267 494524 - hypothetical protein gene gene506 http://www.ncbi.nlm.nih.gov/gene/?term=RB936 RB9360 RB9360 rtcB rtcB 5014031 5015563 - hypothetical protein PMID: 9738023 best DB hits: BLAST: pir:E72265%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D1e-45 gb:AAB90372.1%3B (AE001044) conserved hypothetical protein%3B E%3D3e-43 pir:B69080%3B conserved hypothetical protein MTH1597 -%3B E%3D2e-40 COG: TM1357%3B COG1690 Uncharacterized ACR%3B E%3D1e-46 PFAM: PF01139%3B Uncharacterized protein family UPF00%3B E%3D3e-38 PF00367%3B phosphotransferase system%2C EIIB%3B E%3D0.44 gene gene5226 http://www.ncbi.nlm.nih.gov/gene/?term=RB9360 RB9364 RB9364 rtcR rtcR 5015748 5017364 + transcriptional regulator RtcR PMID: 9738023 best DB hits: BLAST: pir:C83074%3B transcriptional regulator RtcR PA4581 [imported] -%3B E%3D1e-163 swissprot:P38035%3B RTCR_ECOLI transcriptional regulator%3B E%3D1e-162 gb:AAA58220.1%3B (U18997) ORF_o532 [Escherichia coli]%3B E%3D1e-161 COG: rtcR_2%3B COG1221 NtrC family transcriptional regulators%2C ATPase%3B E%3D1e-111 atoC%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D8e-38 aq_218_2%3B COG1221 NtrC family transcriptional regulators%2C ATPase%3B E%3D3e-37 PFAM: PF00004%3B ATPase associated with variou%3B E%3D0.29 PF00158%3B Sigma-54 interaction domain%3B E%3D4e-84 gene gene5227 http://www.ncbi.nlm.nih.gov/gene/?term=RB9364 RB9365 RB9365 RB9365 5017351 5017809 + hypothetical protein gene gene5228 http://www.ncbi.nlm.nih.gov/gene/?term=RB9365 RB9366 RB9366 RB9366 5017918 5018946 - sodium-dependent transporter best DB hits: BLAST: swissprot:P39879%3B YK26_PSEAE HYPOTHETICAL PROTEIN PA2026 -----%3B E%3D7e-06 gb:AAG57528.1%3B AE005471_5 (AE005471) cytochrome oxidase%3B E%3D0.004 ddbj:BAA16281.1%3B (D90870) similar to [SwissProt Accession Number%3B E%3D0.015 COG: PA2026%3B COG0385 Predicted Na+-dependent transporter%3B E%3D7e-07 gene gene5229 http://www.ncbi.nlm.nih.gov/gene/?term=RB9366 RB9367 RB9367 lolI lolI 5018952 5019971 - xylose isomerase PMID: 7952181 best DB hits: BLAST: swissprot:P42419%3B IOLI_BACSU IOLI PROTEIN ----- pir: A69646%3B E%3D3e-12 ddbj:BAB06034.1%3B (AP001515) myo-inositol catabolism [Bacillus%3B E%3D1e-08 pir:D83615%3B hypothetical protein PA0242 [imported] - Pseudomonas%3B E%3D1e-05 COG: BS_iolI%3B COG1082 Predicted endonucleases%3B E%3D3e-13 gene gene5230 http://www.ncbi.nlm.nih.gov/gene/?term=RB9367 RB9369 RB9369 RB9369 5020156 5020713 - hypothetical protein gene gene5231 http://www.ncbi.nlm.nih.gov/gene/?term=RB9369 RB9372 RB9372 hisH hisH 5020746 5021363 - amidotransferase hisH PMID: 3062174 PMID: 8494895 PMID: 11551184 best DB hits: BLAST: swissprot:O66943%3B HIS5_AQUAE AMIDOTRANSFERASE HISH ----- pir:%3B E%3D9e-37 gb:AAA81252.1%3B (U30821) glutamine amidotransferase [Cyanophora%3B E%3D7e-34 swissprot:O27568%3B HIS5_METTH AMIDOTRANSFERASE HISH ----- pir:%3B E%3D3e-33 COG: aq_732%3B COG0118 Glutamine amidotransferase%3B E%3D9e-38 PFAM: PF00117%3B Glutamine amidotransferase class-I%3B E%3D8.1e-34 gene gene5232 http://www.ncbi.nlm.nih.gov/gene/?term=RB9372 RB9374 RB9374 recQ recQ 5021612 5023600 - ATP-dependent DNA helicase RecQ PMID: 3027506 PMID: 2164680 best DB hits: BLAST: gb:AAK05906.1%3B AE006411_1 (AE006411) ATP-dependent DNA helicase%3B E%3D9e-60 pir:E83226%3B ATP-dependent DNA helicase RecQ PA3344 [imported] -%3B E%3D4e-58 pir:G75413%3B DNA helicase RecQ - Deinococcus radiodurans (strain R1)%3B E%3D1e-56 COG: PA3344%3B COG0514 Superfamily II DNA helicase%3B E%3D4e-59 YPL119c%3B COG0513 Superfamily II DNA and RNA helicases%3B E%3D5e-12 PFAM: PF00270%3B DEAD/DEAH box helicase%3B E%3D1e-32 PF00271%3B Helicase conserved C-terminal d%3B E%3D3.8e-26 gene gene5233 http://www.ncbi.nlm.nih.gov/gene/?term=RB9374 RB9376 RB9376 RB9376 5023619 5029102 - G-cadherin PMID: 9441671 best DB hits: BLAST: pir:T30213%3B G-cadherin - sea urchin (Lytechinus variegatus) -----%3B E%3D9e-17 ddbj:BAA84069.1%3B (AB028498) Flamingo [Drosophila melanogaster]%3B E%3D5e-14 gb:AAF02618.1%3B AF172329_1 (AF172329) starry night protein%3B E%3D5e-14 PFAM: PF00028%3B Cadherin domain%3B E%3D7.1e-08 gene gene5234 http://www.ncbi.nlm.nih.gov/gene/?term=RB9376 RB938 RB938 RB938 494630 494833 - hypothetical protein gene gene507 http://www.ncbi.nlm.nih.gov/gene/?term=RB938 RB9380 RB9380 RB9380 5029125 5029487 - hypothetical protein gene gene5235 http://www.ncbi.nlm.nih.gov/gene/?term=RB9380 RB9382 RB9382 htrA htrA 5029471 5030859 + serine protease do-like [precursor] PMID: 8576051 best DB hits: BLAST: swissprot:P18584%3B DEGP_CHLTR PROBABLE SERINE PROTEASE DO-LIKE%3B E%3D2e-39 pir:B81728%3B serine proteinase%2C HtrADegQ/DegS family TC0210%3B E%3D4e-39 swissprot:Q9Z6T0%3B DEGP_CHLPN PROBABLE SERINE PROTEASE DO-LIKE%3B E%3D2e-36 COG: CT823%3B COG0265 Trypsin-like serine proteases%2C typically periplasmic%2C%3B E%3D2e-40 CPn0979%3B COG0265 Trypsin-like serine proteases%2C typically%3B E%3D2e-37 degQ%3B COG0265 Trypsin-like serine proteases%2C typically periplasmic%2C%3B E%3D4e-31 PFAM: PF00089%3B Trypsin%3B E%3D3.9e-17 PF00595%3B PDZ domain (Also known as DHR or GLG%3B E%3D1.5e-07 gene gene5236 http://www.ncbi.nlm.nih.gov/gene/?term=RB9382 RB9384 RB9384 rbsC rbsC 5030902 5032212 - ribose ABC transporter permease PMID: 11337471 PMID: 7921236 best DB hits: BLAST: gb:AAK05734.1%3B AE006394_4 (AE006394) ribose ABC transporter%3B E%3D1e-16 pir:G72416%3B sugar ABC transporter%2C permease - Thermotoga%3B E%3D3e-16 pir:B69690%3B ribose ABC transporter (permease) rbsC - Bacillus%3B E%3D3e-16 COG: TM0112%3B COG1172 Ribose/xylose/arabinose/galactoside ABC-type%3B E%3D3e-17 rbsC%3B COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport%3B E%3D2e-14 VCA0129%3B COG1172 Ribose/xylose/arabinose/galactoside ABC-type%3B E%3D3e-14 PFAM: PF02653%3B Branched-chain amino acid transp%3B E%3D6e-09 gene gene5237 http://www.ncbi.nlm.nih.gov/gene/?term=RB9384 RB9385 RB9385 rbsA rbsA 5032209 5033732 - ribose ABC transporter ATP-binding protein PMID: 3011793 PMID: 3086314 best DB hits: BLAST: gb:AAG59288.1%3B AE005642_7 (AE005642) ATP-binding protein%3B E%3D8e-88 ddbj:BAB06041.1%3B (AP001515) sugar ABC transporter (ATP-binding%3B E%3D1e-86 ddbj:BAB07449.1%3B (AP001519) ribose ABC transporter (ATP-binding%3B E%3D2e-86 COG: BH2322%3B COG1129 ABC-type sugar (aldose) transport system%2C ATPase%3B E%3D1e-87 PFAM: PF00005%3B ABC transporter%3B E%3D2.1e-51 gene gene5238 http://www.ncbi.nlm.nih.gov/gene/?term=RB9385 RB9386 RB9386 fixW fixW 5033729 5034937 - FixW protein PMID: 2555670 PMID: 2137818 best DB hits: BLAST: swissprot:P14312%3B FIXW_RHILE FIXW PROTEIN ----- pir: JQ0313%3B E%3D7e-12 swissprot:P36893%3B HELX_RHOCA THIOL:DISULFIDE INTERCHANGE PROTEIN%3B E%3D1e-08 pir:C70314%3B thiol-disulfide interchange protein tlpA [imported] -%3B E%3D3e-05 COG: aq_152%3B COG0526 Thiol-disulfide isomerase and thioredoxins%3B E%3D3e-06 PFAM: PF00085%3B Thioredoxin%3B E%3D4.6e-05 gene gene5239 http://www.ncbi.nlm.nih.gov/gene/?term=RB9386 RB9388 RB9388 RB9388 5034987 5035370 + hypothetical protein gene gene5240 http://www.ncbi.nlm.nih.gov/gene/?term=RB9388 RB9389 RB9389 RB9389 5034998 5035390 - hypothetical protein gene gene5241 http://www.ncbi.nlm.nih.gov/gene/?term=RB9389 RB9390 RB9390 RB9390 5035453 5038491 + signal peptide PMID: 11823852 best DB hits: PFAM: PF00263%3B Bacterial type II and III secretion%3B E%3D0.68 gene gene5242 http://www.ncbi.nlm.nih.gov/gene/?term=RB9390 RB9392 RB9392 RB9392 5037580 5038107 - signal peptide gene gene5243 http://www.ncbi.nlm.nih.gov/gene/?term=RB9392 RB9395 RB9395 RB9395 5038491 5041415 + membrane protein- transporter best DB hits: BLAST: swissprot:O54101%3B MMLB_STRCO MEMBRANE PROTEIN SC10A5.10C%3B E%3D2e-29 swissprot:P96706%3B YDGH_BACSU MEMBRANE PROTEIN YDGH%3B E%3D3e-17 swissprot:Q53902%3B MMLA_STRCO MEMBRANE PROTEIN ACTII-3%3B E%3D1e-15 COG: BS_ydgH%3B COG2409 Predicted transporters%3B E%3D3e-18 AF0459%3B COG1033 Membrane proteins related to SecD/SecF%3B E%3D3e-07 BS_ydfJ%3B COG2409 Predicted transporters%3B E%3D3e-07 gene gene5244 http://www.ncbi.nlm.nih.gov/gene/?term=RB9395 RB9399 RB9399 RB9399 5041464 5041676 + signal peptide gene gene5245 http://www.ncbi.nlm.nih.gov/gene/?term=RB9399 RB940 RB940 RB940 494838 496547 - hypothetical protein best DB hits: PFAM: PF02012%3B BNR repeat%3B E%3D0.072 gene gene508 http://www.ncbi.nlm.nih.gov/gene/?term=RB940 RB9401 RB9401 miaB miaB 5041673 5043112 + MiaB protein- tRNA-thiotransferase PMID: 20042346 best DB hits: BLAST: swissprot:Q57163%3B YLEA_HAEIN HYPOTHETICAL PROTEIN HI0019 -----%3B E%3D2e-87 gb:AAK03085.1%3B (AE006140) unknown [Pasteurella multocida]%3B E%3D3e-85 pir:C81034%3B conserved hypothetical protein NMB1866 [imported] -%3B E%3D3e-85 COG: HI0019%3B COG0621 Fe-S oxidoreductases family 1%3B E%3D2e-88 PFAM: PF00919%3B Uncharacterized protein family UPF00%3B E%3D1e-42 gene gene5246 http://www.ncbi.nlm.nih.gov/gene/?term=RB9401 RB9402 RB9402 RB9402 5043252 5044550 + zinc protease PMID: 9634230 best DB hits: BLAST: pir:A75264%3B hypothetical protein - Deinococcus radiodurans (strain%3B E%3D2e-36 gb:AAF78805.1%3B (U33883) mitochondrial processing peptidase-like%3B E%3D1e-35 swissprot:O86835%3B YA12_STRCO HYPOTHETICAL ZINC PROTEASE SC9A10.02%3B E%3D7e-26 COG: DR2516%3B COG0612 Predicted Zn-dependent peptidases%3B E%3D2e-37 gene gene5247 http://www.ncbi.nlm.nih.gov/gene/?term=RB9402 RB9404 RB9404 RB9404 5044547 5045809 + zinc protease best DB hits: BLAST: swissprot:O33324%3B YR82_MYCTU HYPOTHETICAL ZINC PROTEASE RV2782C%3B E%3D3e-47 swissprot:O32965%3B YR82_MYCLE HYPOTHETICAL ZINC PROTEASE MLCB22.26C%3B E%3D7e-44 pir:H75263%3B probable zinc proteinase - Deinococcus radiodurans%3B E%3D9e-43 COG: Rv2782c%3B COG0612 Predicted Zn-dependent peptidases%3B E%3D3e-48 PFAM: PF00675%3B Insulinase (Peptidase M1%3B E%3D4.8e-38 gene gene5248 http://www.ncbi.nlm.nih.gov/gene/?term=RB9404 RB9405 RB9405 RB9405 5045817 5047787 + hypothetical protein gene gene5249 http://www.ncbi.nlm.nih.gov/gene/?term=RB9405 RB9409 RB9409 RB9409 5047798 5048169 - hypothetical protein gene gene5250 http://www.ncbi.nlm.nih.gov/gene/?term=RB9409 RB941 RB941 RB941 496342 498192 - hypothetical protein PMID: 8905231 best DB hits: BLAST: pir:S75363%3B hypothetical protein sll1913 - Synechocystis sp. (strain%3B E%3D2e-04 pir:S76658%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D9e-04 embl:CAB62685.1%3B (AL133422) membrane protein.%3B E%3D0.002 PFAM: PF01593%3B Flavin containing amine oxidase%3B E%3D0.49 PF00070%3B Pyridine nucleotide-disulphide%3B E%3D0.14 gene gene509 http://www.ncbi.nlm.nih.gov/gene/?term=RB941 RB9410 RB9410 RB9410 5048166 5048582 - hypothetical protein gene gene5251 http://www.ncbi.nlm.nih.gov/gene/?term=RB9410 RB9411 RB9411 RB9411 5048517 5049893 + transposase PMID: 20002534 PMID: 20225833 best DB hits: BLAST: gb:AAD38020.1%3B AF148127_1 (AF148127) transposase [Porphyromonas%3B E%3D2e-13 ddbj:BAA83477.1%3B (AB009361) transposase [Porphyromonas%3B E%3D3e-13 ddbj:BAA92234.1%3B (AB031551) transposase [Bacillus subtilis]%3B E%3D4e-10 COG: BH0691%3B COG3385 Predicted transposase%3B E%3D4e-10 PFAM: PF01609%3B Transposase (IS4 family)%3B E%3D6.2e-08 gene gene5252 http://www.ncbi.nlm.nih.gov/gene/?term=RB9411 RB9412 RB9412 RB9412 5049820 5050239 + signal peptide gene gene5253 http://www.ncbi.nlm.nih.gov/gene/?term=RB9412 RB9414 RB9414 RB9414 5050290 5050445 - hypothetical protein gene gene5254 http://www.ncbi.nlm.nih.gov/gene/?term=RB9414 RB9415 RB9415 RB9415 5050419 5050529 + hypothetical protein gene gene5255 http://www.ncbi.nlm.nih.gov/gene/?term=RB9415 RB9417 RB9417 RB9417 5050621 5050932 + hypothetical protein gene gene5256 http://www.ncbi.nlm.nih.gov/gene/?term=RB9417 RB9418 RB9418 RB9418 5051079 5053283 - signal-transducing histidine kinase best DB hits: BLAST: swissprot:Q9R6X3%3B PHYB_ANASP CYANOBACTERIAL PHYTOCHROME B -----%3B E%3D5e-32 gb:AAB89763.1%3B (AE001000) signal-transducing histidine kinase%3B E%3D7e-28 pir:C75276%3B sensory box sensor histidine kinase - Deinococcus%3B E%3D5e-25 COG: DR2419_2%3B COG0642 Sensory transduction histidine kinases%3B E%3D5e-26 PFAM: PF00989%3B PAS domain%3B E%3D1.5e-06 PF00785%3B PAC motif%3B E%3D0.00034 PF00512%3B His Kinase A (phosphoacceptor) doma%3B E%3D1.3e-11 gene gene5257 http://www.ncbi.nlm.nih.gov/gene/?term=RB9418 RB9420 RB9420 msaB msaB 5053377 5055368 - ABC transporter ATP-binding protein PMID: 8094880 PMID: 9575204 PMID: 11546864 best DB hits: BLAST: pir:G69815%3B ABC transporter (ATP-binding protein) homolog ygaD -%3B E%3D7e-74 ddbj:BAB04660.1%3B (AP001510) ABC transporter (ATP-binding protein)%3B E%3D3e-66 swissprot:P27299%3B MSBA_ECOLI PROBABLE TRANSPORT ATP-BINDING%3B E%3D6e-65 COG: BS_ygaD%3B COG1132 ABC-type multidrug/protein/lipid transport system%2C%3B E%3D7e-75 PFAM: PF00664%3B ABC transporter transmembrane re%3B E%3D1.7e-13 PF01583%3B Adenylylsulfate kinase%3B E%3D0.7 PF01202%3B Shikimate kinase%3B E%3D0.27 gene gene5258 http://www.ncbi.nlm.nih.gov/gene/?term=RB9420 RB9421 RB9421 RB9421 5055426 5057453 - lipoprotein best DB hits: BLAST: embl:CAB75310.1%3B (AL139164) lipoprotein [Streptomyces%3B E%3D0.011 gene gene5259 http://www.ncbi.nlm.nih.gov/gene/?term=RB9421 RB9423 RB9423 RB9423 5056635 5057219 + talin PMID: 1629228 best DB hits: BLAST: gb:AAG22814.1%3B (AF299248) talin [Drosophila melanogaster]%3B E%3D0.78 gene gene5260 http://www.ncbi.nlm.nih.gov/gene/?term=RB9423 RB9424 RB9424 RB9424 5057450 5058616 - hypothetical protein best DB hits: BLAST: pir:G70121%3B conserved hypothetical protein BB0175 - Lyme disease%3B E%3D4e-10 pir:G82493%3B conserved hypothetical protein VCA0174 [imported] -%3B E%3D6e-09 swissprot:P71761%3B YE80_MYCTU HYPOTHETICAL 34.3 KDA PROTEIN RV1480%3B E%3D1e-08 COG: BB0175%3B COG1721 Uncharacterized ACR%3B E%3D3e-11 PFAM: PF01882%3B Protein of unknown function DUF58%3B E%3D3.1e-15 gene gene5261 http://www.ncbi.nlm.nih.gov/gene/?term=RB9424 RB9427 RB9427 RB9427 5058620 5060074 + hypothetical protein best DB hits: BLAST: pir:T47637%3B hypothetical protein T5N23.140 - Arabidopsis thaliana%3B E%3D5e-20 swissprot:Q55874%3B Y103_SYNY3 HYPOTHETICAL 45.8 KD PROTEIN SLL0103%3B E%3D2e-18 swissprot:P76481%3B YFBK_ECOLI HYPOTHETICAL 63.6 KD PROTEIN IN%3B E%3D3e-18 COG: sll0103%3B COG2304 Protein containing von Willebrand factor (vWF) type%3B E%3D2e-19 yfbK%3B COG2304 Protein containing von Willebrand factor (vWF) type A%3B E%3D3e-19 PFAM: PF00092%3B von Willebrand factor type A domain%3B E%3D4.8e-06 gene gene5262 http://www.ncbi.nlm.nih.gov/gene/?term=RB9427 RB9428 RB9428 RB9428 5060081 5061778 + two-component sensor histidine kinase VicK best DB hits: BLAST: embl:CAB64973.1%3B (AJ012050) VicK protein [Enterococcus faecalis]%3B E%3D2e-15 pir:C72228%3B sensor histidine kinase HpkA - Thermotoga maritima%3B E%3D5e-15 ddbj:BAB05664.1%3B (AP001513) two-component sensor histidine kinase%3B E%3D5e-15 COG: TM1654_2%3B COG0642 Sensory transduction histidine kinases%3B E%3D5e-16 PFAM: PF00193%3B Extracellular link domain%3B E%3D0.19 PF00512%3B His Kinase A (phosphoacceptor) doma%3B E%3D2.9e-16 PF02518%3B Histidine kinase-%2C DNA gyrase B-%2C p%3B E%3D6.3e-27 gene gene5263 http://www.ncbi.nlm.nih.gov/gene/?term=RB9428 RB943 RB943 RB943 498189 498341 - hypothetical protein gene gene510 http://www.ncbi.nlm.nih.gov/gene/?term=RB943 RB9431 RB9431 cheY cheY 5061763 5062482 + two-component system response regulator PMID: 1454550 best DB hits: BLAST: embl:CAB90891.1%3B (AL355753) two-component system response%3B E%3D4e-40 swissprot:P37478%3B YYCF_BACSU HYPOTHETICAL 27.2 KD SENSORY%3B E%3D5e-40 gb:AAD10263.1%3B (AF036966) response regulator%3B E%3D9e-40 COG: BS_yycF%3B COG0745 Response regulators consisting of a CheY-like%3B E%3D5e-41 ompR%3B COG0745 Response regulators consisting of a CheY-like receiver%3B E%3D8e-37 TM1655%3B COG0745 Response regulators consisting of a CheY-like%3B E%3D7e-36 PFAM: PF00072%3B Response regulator receiver doma%3B E%3D3.9e-38 PF00486%3B Transcriptional regulatory prote%3B E%3D4.2e-23 gene gene5264 http://www.ncbi.nlm.nih.gov/gene/?term=RB9431 RB9432 RB9432 RB9432 5062464 5063273 + signal peptide gene gene5265 http://www.ncbi.nlm.nih.gov/gene/?term=RB9432 RB9433 RB9433 RB9433 5063294 5063998 - hypothetical protein best DB hits: BLAST: pir:S76975%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D1e-10 pir:S74748%3B hypothetical protein slr0981 - Synechocystis sp. (strain%3B E%3D2e-08 pir:B70303%3B hypothetical protein aq_037 - Aquifex aeolicus -----%3B E%3D4e-08 gene gene5266 http://www.ncbi.nlm.nih.gov/gene/?term=RB9433 RB9434 RB9434 RB9434 5064002 5064139 - hypothetical protein gene gene5267 http://www.ncbi.nlm.nih.gov/gene/?term=RB9434 RB9435 RB9435 pkn2 pkn2 5064117 5067209 - serine/threonine-protein kinase PMID: 7774814 best DB hits: BLAST: embl:CAB94054.1%3B (AL358672) serinethreonine-protein%3B E%3D9e-43 swissprot:P54736%3B PKN2_MYXXA SERINETHREONINE-PROTEIN KINASE PKN2%3B E%3D4e-39 swissprot:Q10697%3B PKNJ_MYCTU PROBABLE SERINETHREONINE-PROTEIN%3B E%3D2e-38 COG: Rv2088%3B COG0515 Serine/threonine protein kinases%3B E%3D2e-39 PFAM: PF00069%3B Protein kinase domain%3B E%3D1.6e-54 gene gene5268 http://www.ncbi.nlm.nih.gov/gene/?term=RB9435 RB9437 RB9437 sigY sigY 5067290 5067919 + RNA polymerase sigma factor Y best DB hits: BLAST: ddbj:BAB05334.1%3B (AP001512) RNA polymerase sigma factor Y%3B E%3D5e-04 swissprot:Q44583%3B NCCH_ALCXX RNA POLYMERASE SIGMA FACTOR NCCH%3B E%3D6e-04 embl:CAB55345.1%3B (AJ010584) ECF sigma factor [Streptomyces%3B E%3D6e-04 COG: BH1615%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D4e-05 PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D2.8e-10 PF00140%3B Sigma-70 factor%3B E%3D0.11 gene gene5269 http://www.ncbi.nlm.nih.gov/gene/?term=RB9437 RB9438 RB9438 RB9438 5067945 5069423 - large%2C multifunctional secreted protein best DB hits: BLAST: pir:T36423%3B probable large%2C multifunctional secreted protein -%3B E%3D4e-50 embl:CAB45032.1%3B (AL078635) large multi-functional%3B E%3D6e-45 gene gene5270 http://www.ncbi.nlm.nih.gov/gene/?term=RB9438 RB9439 RB9439 RB9439 5069490 5073116 - large multi-functional protein best DB hits: BLAST: embl:CAB58265.1%3B (AL121849) multi-domain protein%3B E%3D6e-33 embl:CAB45032.1%3B (AL078635) large multi-functional%3B E%3D1e-32 pir:T36423%3B probable large%2C multifunctional secreted protein -%3B E%3D1e-06 PFAM: PF00034%3B Cytochrome c%3B E%3D0.023 gene gene5271 http://www.ncbi.nlm.nih.gov/gene/?term=RB9439 RB9442 RB9442 RB9442 5073113 5074930 - hypothetical protein gene gene5272 http://www.ncbi.nlm.nih.gov/gene/?term=RB9442 RB9445 RB9445 RB9445 5074872 5075621 + hypothetical protein best DB hits: BLAST: embl:CAB89030.1%3B (AL353870) integral membrane protein.%3B E%3D6e-17 gene gene5273 http://www.ncbi.nlm.nih.gov/gene/?term=RB9445 RB9447 RB9447 RB9447 5075664 5076218 + hypothetical protein best DB hits: BLAST: pir:S75593%3B hypothetical protein slr1340 - Synechocystis sp. (strain%3B E%3D3e-27 swissprot:P08457%3B STA_STRLA STREPTOTHRICIN ACETYLTRANSFERASE%3B E%3D2e-05 pir:JN0662%3B nourseothricin acetyltransferase (EC 2.3.1.-) -%3B E%3D3e-04 COG: slr1340%3B COG0454 Histone acetyltransferase HPA2 and related%3B E%3D3e-28 MTH1284%3B COG0456 Acetyltransferases%3B E%3D0.001 AF0521%3B COG0454 Histone acetyltransferase HPA2 and related%3B E%3D0.001 PFAM: PF00583%3B Acetyltransferase (GNAT) family%3B E%3D1.7e-20 gene gene5274 http://www.ncbi.nlm.nih.gov/gene/?term=RB9447 RB9448 RB9448 RB9448 5076267 5076614 + hypothetical protein best DB hits: BLAST: pir:C82978%3B conserved hypothetical protein PA5333 [imported] -%3B E%3D1e-12 pir:S74932%3B hypothetical protein slr0686 - Synechocystis sp. (strain%3B E%3D1e-08 COG: PA5333%3B COG3296 Uncharacterized BCR%3B E%3D1e-13 gene gene5275 http://www.ncbi.nlm.nih.gov/gene/?term=RB9448 RB945 RB945 lldP lldP 498338 500020 - L-lactate permease PMID: 11785976 best DB hits: BLAST: ddbj:BAB05550.1%3B (AP001513) L-lactate permease [Bacillus%3B E%3D1e-116 pir:H82393%3B probable L-lactate permease VCA0983 [imported] - Vibrio%3B E%3D1e-105 ddbj:BAB03938.1%3B (AP001507) L-lactate permease [Bacillus%3B E%3D1e-102 COG: BH1831%3B COG1620 L-lactate permease%3B E%3D1e-117 PFAM: PF02652%3B L-lactate permease%3B E%3D1.9e-41 gene gene511 http://www.ncbi.nlm.nih.gov/gene/?term=RB945 RB9450 RB9450 RB9450 5076581 5076739 + hypothetical protein gene gene5276 http://www.ncbi.nlm.nih.gov/gene/?term=RB9450 RB9460 RB9460 RB9460 5078621 5078860 - hypothetical protein best DB hits: BLAST: gb:AAF79368.1%3B AC007887_27 (AC007887) F15O4.40 [Arabidopsis%3B E%3D0.77 gene gene5278 http://www.ncbi.nlm.nih.gov/gene/?term=RB9460 RB9462 RB9462 RB9462 5078876 5079106 - hypothetical protein gene gene5279 http://www.ncbi.nlm.nih.gov/gene/?term=RB9462 RB9463 RB9463 RB9463 5079098 5080984 + hypothetical protein best DB hits: BLAST: pir:H69181%3B hypothetical protein MTH616 - Methanobacterium%3B E%3D4e-31 pir:H69125%3B hypothetical protein MTH210 - Methanobacterium%3B E%3D2e-30 gb:AAF35993.1%3B AC005836_5 (AC005836) 26S Protease Regulatory%3B E%3D0.42 COG: MTH616%3B COG0606 Predicted ATPases%3B E%3D4e-32 PFAM: PF00004%3B ATPase associated with variou%3B E%3D0.039 gene gene5280 http://www.ncbi.nlm.nih.gov/gene/?term=RB9463 RB9469 RB9469 RB9469 5081396 5082625 + hypothetical protein best DB hits: PFAM: PF01040%3B UbiA prenyltransferase%3B E%3D0.14 gene gene5281 http://www.ncbi.nlm.nih.gov/gene/?term=RB9469 RB9470 RB9470 ppk ppk 5082460 5085018 + polyphosphate kinase catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate gene gene5282 http://www.ncbi.nlm.nih.gov/gene/?term=RB9470 RB9472 RB9472 RB9472 5085031 5085393 + hypothetical protein gene gene5283 http://www.ncbi.nlm.nih.gov/gene/?term=RB9472 RB9474 RB9474 RB9474 5085390 5087720 + signal peptide gene gene5284 http://www.ncbi.nlm.nih.gov/gene/?term=RB9474 RB9477 RB9477 RB9477 5087717 5088817 + ABC-type transport protein best DB hits: BLAST: pir:S74476%3B ABC-type transport protein slr1113 - Synechocystis sp.%3B E%3D2e-46 pir:H71008%3B probable ATP-binding transport protein - Pyrococcus%3B E%3D2e-41 pir:E75122%3B hypothetical protein PAB1845 - Pyrococcus abyssi (strain%3B E%3D2e-40 COG: slr1113%3B COG1131 ABC-type multidrug transport system%2C ATPase%3B E%3D2e-47 ybhF%3B COG1131 ABC-type multidrug transport system%2C ATPase component%3B E%3D1e-33 TM1403%3B COG1131 ABC-type multidrug transport system%2C ATPase%3B E%3D2e-33 PFAM: PF00005%3B ABC transporter%3B E%3D5e-40 gene gene5285 http://www.ncbi.nlm.nih.gov/gene/?term=RB9477 RB9478 RB9478 RB9478 5088814 5089818 + methyltransferase best DB hits: BLAST: pir:F81850%3B conserved hypothetical protein NMA1579 [imported] -%3B E%3D1e-66 pir:D81090%3B conserved hypothetical protein NMB1367 [imported] -%3B E%3D3e-66 pir:A82195%3B conserved hypothetical protein VC1488 [imported] -%3B E%3D1e-65 COG: NMB1367%3B COG1092 Predicted SAM-dependent methyltransferases%3B E%3D3e-67 gene gene5286 http://www.ncbi.nlm.nih.gov/gene/?term=RB9478 RB9480 RB9480 RB9480 5089839 5090633 - hypothetical protein gene gene5287 http://www.ncbi.nlm.nih.gov/gene/?term=RB9480 RB9481 RB9481 RB9481 5090691 5090858 - hypothetical protein gene gene5288 http://www.ncbi.nlm.nih.gov/gene/?term=RB9481 RB9482 RB9482 RB9482 5090809 5092401 + hypothetical protein best DB hits: BLAST: pir:G71008%3B hypothetical protein PH1365 - Pyrococcus horikoshii%3B E%3D0.58 pir:F75122%3B hypothetical protein PAB1844 - Pyrococcus abyssi (strain%3B E%3D0.72 gene gene5289 http://www.ncbi.nlm.nih.gov/gene/?term=RB9482 RB9484 RB9484 RB9484 5092452 5094011 - hypothetical protein best DB hits: BLAST: gb:AAF87925.1%3B AF163841_2 (AF163841) unknown [Myxococcus xanthus]%3B E%3D9e-51 swissprot:Q50722%3B YY03_MYCTU HYPOTHETICAL 57.9 KDA PROTEIN RV3403C%3B E%3D0.031 PFAM: PF00070%3B Pyridine nucleotide-disulphide oxid%3B E%3D4.7e-05 gene gene5290 http://www.ncbi.nlm.nih.gov/gene/?term=RB9484 RB9485 RB9485 RB9485 5094035 5094190 - hypothetical protein gene gene5291 http://www.ncbi.nlm.nih.gov/gene/?term=RB9485 RB9486 RB9486 RB9486 5094163 5094687 + hypothetical protein PMID: 8384293 best DB hits: BLAST: gb:AAB87745.1%3B (U89914) hypothetical 16.1 kDa transcriptional%3B E%3D8e-10 pir:G69867%3B transcriptional regulator MarR family homolog ykvE -%3B E%3D6e-06 pir:A82692%3B transcriptional regulator MarR family XF1354 [imported] -%3B E%3D1e-05 COG: BS_ykvE%3B COG1846 Transcriptional regulators%3B E%3D6e-07 PFAM: PF01047%3B MarR family%3B E%3D3.1e-20 gene gene5292 http://www.ncbi.nlm.nih.gov/gene/?term=RB9486 RB9488 RB9488 RB9488 5094757 5096388 + hypothetical protein PMID: 11549181 best DB hits: BLAST: gb:AAF82075.1%3B AF232751_3 (AF232751) unknown protein%3B E%3D1e-22 gb:AAB89642.1%3B (AE000991) conserved hypothetical protein%3B E%3D1e-10 gb:AAB89643.1%3B (AE000991) A. fulgidus predicted coding region%3B E%3D8e-05 COG: yeiH%3B COG2855 Uncharacterized membrane protein%3B E%3D2e-04 PFAM: PF00065%3B Neurotransmitter-gated ion-channel%3B E%3D0.36 gene gene5293 http://www.ncbi.nlm.nih.gov/gene/?term=RB9488 RB949 RB949 RB949 500121 500420 + hypothetical protein gene gene512 http://www.ncbi.nlm.nih.gov/gene/?term=RB949 RB9491 RB9491 RB9491 5096385 5096651 + signal peptide gene gene5294 http://www.ncbi.nlm.nih.gov/gene/?term=RB9491 RB9493 RB9493 RB9493 5096754 5097221 + acetyltransferase best DB hits: BLAST: pir:G83613%3B probable acetyltransferase PA0249 [imported] -%3B E%3D7e-20 pir:S41381%3B hypothetical protein - Pseudomonas aeruginosa -----%3B E%3D5e-16 swissprot:P37664%3B YIAC_ECOLI HYPOTHETICAL 17.1 KDA PROTEIN IN%3B E%3D2e-13 COG: PA0249%3B COG0454 Histone acetyltransferase HPA2 and related%3B E%3D6e-21 Rv3420c%3B COG0456 Acetyltransferases%3B E%3D0.006 PFAM: PF00583%3B Acetyltransferase (GNAT) family%3B E%3D4.2e-21 gene gene5295 http://www.ncbi.nlm.nih.gov/gene/?term=RB9493 RB9494 RB9494 RB9494 5097275 5098132 - hypothetical protein best DB hits: BLAST: pir:B83343%3B hypothetical protein PA2418 [imported] - Pseudomonas%3B E%3D2e-88 embl:CAC08479.1%3B (AL392189) possible chromosome condensation%3B E%3D8e-42 pir:B83239%3B conserved hypothetical protein PA3240 [imported] -%3B E%3D2e-38 COG: PA2418%3B COG1741 Uncharacterized BCR%3B E%3D2e-89 PFAM: PF02678%3B Uncharacterized BCR%2C YhhW family COG%3B E%3D6.7e-09 gene gene5296 http://www.ncbi.nlm.nih.gov/gene/?term=RB9494 RB9495 RB9495 RB9495 5098332 5098523 - hypothetical protein gene gene5297 http://www.ncbi.nlm.nih.gov/gene/?term=RB9495 RB9496 RB9496 RB9496 5098535 5099059 + hypothetical protein gene gene5298 http://www.ncbi.nlm.nih.gov/gene/?term=RB9496 RB9498 RB9498 arsA arsA 5099139 5100695 + arylsulfatase PMID: 10336424 best DB hits: BLAST: gb:AAF04318.1%3B (AF065159) arylsulfatase [Bradyrhizobium%3B E%3D1e-59 gb:AAG58993.1%3B AE005611_3 (AE005611) arylsulfatase [Escherichia%3B E%3D5e-45 swissprot:P25549%3B ASLA_ECOLI ARYLSULFATASE (ARYL-SULFATE%3B E%3D5e-45 COG: aslA%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D4e-46 yejM%3B COG3083 Predicted hydrolase of alkaline phosphatase%3B E%3D0.001 PFAM: PF00884%3B Sulfatase%3B E%3D5.8e-75 gene gene5299 http://www.ncbi.nlm.nih.gov/gene/?term=RB9498 RB9499 RB9499 moxR moxR 5100826 5101953 + MoxR-related protein PMID: 1657871 best DB hits: BLAST: pir:H82493%3B MoxR-related protein VCA0175 [imported] - Vibrio%3B E%3D1e-87 pir:G83261%3B conserved hypothetical protein PA3070 [imported] -%3B E%3D2e-87 pir:H70121%3B methanol dehydrogenase regulator (moxR) homolog - Lyme%3B E%3D3e-69 COG: VCA0175%3B COG0714 MoxR-like ATPases%3B E%3D9e-89 PFAM: PF01078%3B Magnesium chelatase%2C subunit Chl%3B E%3D6.9e-08 gene gene5300 http://www.ncbi.nlm.nih.gov/gene/?term=RB9499 RB95 RB95 RB95 39617 40090 - hypothetical protein gene gene54 http://www.ncbi.nlm.nih.gov/gene/?term=RB95 RB950 RB950 RB950 500437 501765 - amino acid transporter PMID: 3146645 best DB hits: BLAST: swissprot:Q10858%3B YJ99_MYCTU HYPOTHETICAL 45.3 KDA TRANSPORT%3B E%3D2e-23 embl:CAB76881.1%3B (AL159139) amino acid transporter%3B E%3D2e-16 pir:G82809%3B amino acid transporter XF0408 [imported] - Xylella%3B E%3D3e-15 COG: Rv1999c%3B COG0531 Amino acid transporters%3B E%3D2e-24 BS_gabP%3B COG1113 Gamma-aminobutyrate and related permeases%3B E%3D2e-06 Rv3253c%3B COG0531 Amino acid transporters%3B E%3D4e-06 PFAM: PF00324%3B Amino acid permease%3B E%3D0.00042 gene gene513 http://www.ncbi.nlm.nih.gov/gene/?term=RB950 RB9500 RB9500 RB9500 5101960 5102925 + hypothetical protein best DB hits: BLAST: pir:H83261%3B hypothetical protein PA3071 [imported] - Pseudomonas%3B E%3D2e-35 pir:G82493%3B conserved hypothetical protein VCA0174 [imported] -%3B E%3D6e-30 pir:D83106%3B hypothetical protein PA4323 [imported] - Pseudomonas%3B E%3D1e-11 COG: PA3071%3B COG1721 Uncharacterized ACR%3B E%3D2e-36 PFAM: PF01882%3B Protein of unknown function DUF58%3B E%3D2.4e-18 gene gene5301 http://www.ncbi.nlm.nih.gov/gene/?term=RB9500 RB9501 RB9501 RB9501 5102922 5103431 + hypothetical protein gene gene5302 http://www.ncbi.nlm.nih.gov/gene/?term=RB9501 RB9502 RB9502 RB9502 5103356 5104462 + hypothetical protein best DB hits: BLAST: pir:E82493%3B conserved hypothetical protein VCA0172 [imported] -%3B E%3D7e-49 pir:B83262%3B hypothetical protein PA3073 [imported] - Pseudomonas%3B E%3D3e-44 gb:AAD30858.1%3B AF116251_1 (AF116251) BatA [Bacteroides fragilis]%3B E%3D6e-23 COG: VCA0172%3B COG3035 Uncharacterized BCR%3B E%3D7e-50 gene gene5303 http://www.ncbi.nlm.nih.gov/gene/?term=RB9502 RB9504 RB9504 RB9504 5104459 5105412 + hypothetical protein best DB hits: BLAST: pir:D82493%3B conserved hypothetical protein VCA0171 [imported] -%3B E%3D9e-11 pir:C83262%3B hypothetical protein PA3074 [imported] - Pseudomonas%3B E%3D4e-10 gb:AAD30859.1%3B AF116251_2 (AF116251) BatB [Bacteroides fragilis]%3B E%3D0.046 COG: VCA0171_1%3B COG3035 Uncharacterized BCR%3B E%3D2e-12 gene gene5304 http://www.ncbi.nlm.nih.gov/gene/?term=RB9504 RB9505 RB9505 RB9505 5105412 5106041 + hypothetical protein best DB hits: BLAST: pir:D82493%3B conserved hypothetical protein VCA0171 [imported] -%3B E%3D4e-12 pir:C83262%3B hypothetical protein PA3074 [imported] - Pseudomonas%3B E%3D9e-06 pir:S74853%3B hypothetical protein sll0837 - Synechocystis sp. (strain%3B E%3D0.059 COG: VCA0171_2%3B COG0457 TPR-repeat-containing proteins%3B E%3D2e-10 PFAM: PF00515%3B TPR Domain%3B E%3D1.3e-05 gene gene5305 http://www.ncbi.nlm.nih.gov/gene/?term=RB9505 RB9506 RB9506 RB9506 5106038 5107351 + hypothetical protein best DB hits: BLAST: pir:D83262%3B hypothetical protein PA3075 [imported] - Pseudomonas%3B E%3D1e-18 gene gene5306 http://www.ncbi.nlm.nih.gov/gene/?term=RB9506 RB9508 RB9508 RB9508 5107377 5108834 - hypothetical protein best DB hits: BLAST: pir:S77346%3B hypothetical protein slr1841 - Synechocystis sp. (strain%3B E%3D0.64 gene gene5307 http://www.ncbi.nlm.nih.gov/gene/?term=RB9508 RB951 RB951 RB951 501755 502459 - hypothetical protein gene gene514 http://www.ncbi.nlm.nih.gov/gene/?term=RB951 RB9512 RB9512 RB9512 5108992 5109963 + signal peptide gene gene5308 http://www.ncbi.nlm.nih.gov/gene/?term=RB9512 RB9513 RB9513 RB9513 5109960 5111885 + mu-protocadherin- cell-suface protein PMID: 1501644 best DB hits: BLAST: gb:AAF70456.1%3B AF221952_1 (AF221952) mu-protocadherin [Rattus%3B E%3D5e-08 gb:AAF45927.1%3B (AE003430) CG15570 gene product [Drosophila%3B E%3D3e-07 embl:CAC16087.1%3B (AJ289697) zona pellucida protein 1 [Gallus%3B E%3D5e-07 COG: VC1711%3B COG1032 Fe-S oxidoreductases family 2%3B E%3D6e-04 gene gene5309 http://www.ncbi.nlm.nih.gov/gene/?term=RB9513 RB9518 RB9518 RB9518 5111918 5112856 + signal peptide gene gene5310 http://www.ncbi.nlm.nih.gov/gene/?term=RB9518 RB952 RB952 RB952 502128 502904 + hypothetical protein gene gene515 http://www.ncbi.nlm.nih.gov/gene/?term=RB952 RB9520 RB9520 RB9520 5112897 5114495 - hypothetical protein PMID: 12024217 gene gene5311 http://www.ncbi.nlm.nih.gov/gene/?term=RB9520 RB9522 RB9522 RB9522 5114655 5115068 + hypothetical protein best DB hits: BLAST: swissprot:P37684%3B YIAW_ECOLI HYPOTHETICAL 12.4 KD PROTEIN IN%3B E%3D0.006 swissprot:P32108%3B YIBI_ECOLI HYPOTHETICAL 13.9 KD PROTEIN IN%3B E%3D0.019 gb:AAG58742.1%3B AE005586_7 (AE005586) orf%2C hypothetical protein%3B E%3D0.019 gene gene5312 http://www.ncbi.nlm.nih.gov/gene/?term=RB9522 RB9526 RB9526 RB9526 5115178 5116371 + multidrug resistance efflux pump best DB hits: BLAST: pir:H82507%3B conserved hypothetical protein VCA0047 [imported] -%3B E%3D1e-42 swissprot:P32107%3B YIBH_ECOLI HYPOTHETICAL 42.0 KD PROTEIN IN%3B E%3D2e-27 swissprot:P37683%3B YIAV_ECOLI HYPOTHETICAL 41.8 KD PROTEIN IN%3B E%3D2e-23 COG: VCA0047%3B COG1566 Multidrug resistance efflux pump%3B E%3D1e-43 ybhG%3B COG0845 Membrane-fusion protein%3B E%3D2e-08 PA1237%3B COG1566 Multidrug resistance efflux pump%3B E%3D5e-08 PFAM: PF00529%3B HlyD family secretion protein%3B E%3D3.2e-10 gene gene5313 http://www.ncbi.nlm.nih.gov/gene/?term=RB9526 RB9527 RB9527 RB9527 5116407 5117846 + signal peptide gene gene5314 http://www.ncbi.nlm.nih.gov/gene/?term=RB9527 RB9528 RB9528 RB9528 5117274 5117864 - hypothetical protein gene gene5315 http://www.ncbi.nlm.nih.gov/gene/?term=RB9528 RB9529 RB9529 RB9529 5117956 5118297 + hypothetical protein gene gene5316 http://www.ncbi.nlm.nih.gov/gene/?term=RB9529 RB953 RB953 RB953 502308 503045 - hypothetical protein gene gene516 http://www.ncbi.nlm.nih.gov/gene/?term=RB953 RB9530 RB9530 aslA aslA 5118294 5119910 - arylsulfatase PMID: 10336424 best DB hits: BLAST: swissprot:P25549%3B ASLA_ECOLI ARYLSULFATASE (ARYL-SULFATE%3B E%3D4e-62 gb:AAG58993.1%3B AE005611_3 (AE005611) arylsulfatase [Escherichia%3B E%3D6e-62 gb:AAC32036.1%3B (M90498) arylsulfatase [Escherichia coli]%3B E%3D1e-54 COG: aslA%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D4e-63 PFAM: PF00884%3B Sulfatase%3B E%3D3.6e-42 gene gene5317 http://www.ncbi.nlm.nih.gov/gene/?term=RB9530 RB9532 RB9532 RB9532 5119929 5120243 + hypothetical protein gene gene5318 http://www.ncbi.nlm.nih.gov/gene/?term=RB9532 RB9533 RB9533 cls cls 5120240 5121715 + cardiolipin synthase PMID: 9370333 PMID: 1663113 best DB hits: BLAST: gb:AAB60128.1%3B (U24202) cardiolipin synthase [Escherichia coli]%3B E%3D2e-68 swissprot:P31071%3B CLS_ECOLI CARDIOLIPIN SYNTHETASE (CARDIOLIPIN%3B E%3D4e-68 gb:AAB60144.1%3B (U24204) cardiolipin synthase [Escherichia coli]%3B E%3D7e-68 COG: cls%3B COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiol%3B E%3D3e-69 VC1670%3B COG1502%3B E%3D2e-64 PFAM: PF00614%3B Phospholipase D. Active site motif%3B E%3D0.016 gene gene5319 http://www.ncbi.nlm.nih.gov/gene/?term=RB9533 RB9535 RB9535 ykbA ykbA 5121750 5123204 + amino acid permease PMID: http://us.expasy.org/cgi-bin/niceprot.pl?Q9WVR6 best DB hits: BLAST: pir:B69855%3B amino acid permease homolog ykbA - Bacillus subtilis%3B E%3D4e-13 swissprot:Q9WVR6%3B LAT2_RAT LARGE NEUTRAL AMINO ACIDS TRANSPORTER%3B E%3D2e-11 embl:CAB69072.1%3B (Y19022) LAT2 protein [Mus musculus]%3B E%3D3e-11 COG: BS_ykbA%3B COG0531 Amino acid transporters%3B E%3D4e-14 gene gene5320 http://www.ncbi.nlm.nih.gov/gene/?term=RB9535 RB9536 RB9536 RB9536 5123259 5123963 - hypothetical protein best DB hits: BLAST: pir:S76625%3B hypothetical protein - Synechocystis sp. (strain PCC%3B E%3D1e-13 pir:A83553%3B hypothetical protein PA0742 [imported] - Pseudomonas%3B E%3D3e-06 swissprot:P06549%3B LCTB_BACCA LCTB PROTEIN ----- pir: A25748%3B E%3D0.007 COG: PA0742%3B COG1226 Kef-type K+ transport systems%2C predicted NAD-binding%3B E%3D3e-07 gene gene5321 http://www.ncbi.nlm.nih.gov/gene/?term=RB9536 RB954 RB954 RB954 503004 503387 + hypothetical protein gene gene517 http://www.ncbi.nlm.nih.gov/gene/?term=RB954 RB9540 RB9540 RB9540 5124085 5124243 - hypothetical protein gene gene5322 http://www.ncbi.nlm.nih.gov/gene/?term=RB9540 RB9541 RB9541 mexE mexE 5124210 5125622 + RND multidrug efflux membrane fusion protein MexE precursor PMID: 8196548 best DB hits: BLAST: pir:E83335%3B RND multidrug efflux membrane fusion protein MexE%3B E%3D9e-33 pir:T30829%3B hypothetical protein mexE - Pseudomonas aeruginosa%3B E%3D1e-31 embl:CAC14594.1%3B (AJ252200) membrane fusion protein%3B E%3D1e-21 COG: PA2493%3B COG0845 Membrane-fusion protein%3B E%3D9e-34 PFAM: PF00364%3B Biotin-requiring enzyme%3B E%3D0.31 PF00529%3B HlyD family secretion protein%3B E%3D5.5e-13 gene gene5323 http://www.ncbi.nlm.nih.gov/gene/?term=RB9541 RB9542 RB9542 mexF mexF 5125626 5128739 + RND multidrug efflux transporter MexF best DB hits: BLAST: pir:F83335%3B RND multidrug efflux transporter MexF PA2494 [imported] -%3B E%3D0.0 pir:T30830%3B hypothetical protein mexF - Pseudomonas aeruginosa -----%3B E%3D0.0 pir:T43024%3B ceoB protein - Burkholderia cepacia ----- gb:%3B E%3D0.0 COG: PA2494%3B COG0841 Cation/multidrug efflux pump%3B E%3D0.0 PFAM: PF00873%3B AcrB/AcrD/AcrF family%3B E%3D0 gene gene5324 http://www.ncbi.nlm.nih.gov/gene/?term=RB9542 RB9543 RB9543 RB9543 5128796 5129950 - membrane protein- a permease best DB hits: BLAST: embl:CAB83202.1%3B (AJ277117) membrane protein%3B E%3D6e-21 pir:S47693%3B hypothetical 38.5K protein (ftsy-nika intergenic region)%3B E%3D2e-18 gb:AAG58583.1%3B AE005570_10 (AE005570) orf%2C hypothetical protein%3B E%3D3e-18 COG: yhhT%3B COG0628 Predicted permease%3B E%3D2e-19 PFAM: PF01594%3B Domain of unknown function DUF20%3B E%3D5e-05 gene gene5325 http://www.ncbi.nlm.nih.gov/gene/?term=RB9543 RB9544 RB9544 RB9544 5129925 5130128 + hypothetical protein gene gene5326 http://www.ncbi.nlm.nih.gov/gene/?term=RB9544 RB9546 RB9546 RB9546 5130161 5130991 - a hydrolase best DB hits: BLAST: pir:F72424%3B hypothetical protein - Thermotoga maritima (strain MSB8)%3B E%3D8e-27 gb:AAK03442.1%3B (AE006173) unknown [Pasteurella multocida]%3B E%3D8e-09 swissprot:P10478%3B XYNZ_CLOTM ENDO-1%2C4-BETA-XYLANASE Z PRECURSOR%3B E%3D1e-07 COG: TM0033%3B COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases%3B E%3D7e-28 PFAM: PF00561%3B alpha/beta hydrolase fold%3B E%3D0.033 PF01738%3B Dienelactone hydrolase%3B E%3D0.00013 PF02230%3B Phospholipase/Carboxylesterase%3B E%3D0.012 gene gene5327 http://www.ncbi.nlm.nih.gov/gene/?term=RB9546 RB9547 RB9547 RB9547 5131031 5131201 - hypothetical protein gene gene5328 http://www.ncbi.nlm.nih.gov/gene/?term=RB9547 RB9549 RB9549 RB9549 5131295 5134444 + iduronate-sulfatase (partial) and sulfatase 1 precursor PMID: 8244397 PMID: 8325651 PMID: 20233298 best DB hits: BLAST: gb:AAA37880.1%3B (L07921) iduronate sulfatase [Mus musculus]%3B E%3D6e-34 gb:AAF30402.1%3B AF109924_1 (AF109924) sulfatase 1 precursor [Helix%3B E%3D9e-33 gb:AAF49287.1%3B (AE003522) CG7402 gene product [Drosophila%3B E%3D3e-31 COG: PA0031%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D2e-28 PFAM: PF00884%3B Sulfatase%3B E%3D1.7e-25 gene gene5329 http://www.ncbi.nlm.nih.gov/gene/?term=RB9549 RB955 RB955 RB955 503514 504140 - hypothetical protein gene gene518 http://www.ncbi.nlm.nih.gov/gene/?term=RB955 RB9550 RB9550 RB9550 5134564 5135298 - hypothetical protein PMID: 11823852 gene gene5330 http://www.ncbi.nlm.nih.gov/gene/?term=RB9550 RB9551 RB9551 arsA arsA 5135358 5137139 - ArsA-catalytic subunit of arsenic oxyanion-translocating ATPase PMID: 9464374 best DB hits: BLAST: gb:AAD51849.1%3B AF178758_5 (AF178758) ArsA [Sinorhizobium sp. As4]%3B E%3D1e-162 swissprot:O50593%3B ARSA_ACIMU ARSENICAL PUMP-DRIVING ATPASE%3B E%3D1e-148 swissprot:P52145%3B ARA2_ECOLI ARSENICAL PUMP-DRIVING ATPASE%3B E%3D1e-147 COG: MJ1142%3B COG0003 Arsenite transporting ATPase%3B E%3D6e-22 PA1462%3B COG1192 ATPases involved in chromosome partitioning%3B E%3D4e-04 PFAM: PF01583%3B Adenylylsulfate kinase%3B E%3D0.42 PF00142%3B 4Fe-4S iron sulfur cluster bi%3B E%3D0.31 PF01695%3B IstB-like ATP binding protein%3B E%3D0.025 gene gene5331 http://www.ncbi.nlm.nih.gov/gene/?term=RB9551 RB9555 RB9555 arsD arsD 5137202 5137570 - ArsD repressor protein PMID: 9464374 best DB hits: BLAST: ddbj:BAA24821.1%3B (AB004659) ArsD [Acidiphilium multivorum]%3B E%3D7e-21 swissprot:P46003%3B ARD1_ECOLI ARSENICAL RESISTANCE OPERON%3B E%3D2e-20 gb:AAF89639.1%3B AF168737_2 (AF168737) ArsD [Klebsiella oxytoca]%3B E%3D3e-20 gene gene5332 http://www.ncbi.nlm.nih.gov/gene/?term=RB9555 RB9556 RB9556 RB9556 5137602 5137772 - hypothetical protein gene gene5333 http://www.ncbi.nlm.nih.gov/gene/?term=RB9556 RB9557 RB9557 RB9557 5137783 5140833 - hypothetical protein gene gene5334 http://www.ncbi.nlm.nih.gov/gene/?term=RB9557 RB956 RB956 RB956 503765 504892 - transposase PMID: 7607529 best DB hits: BLAST: swissprot:P55631%3B Y4QJ_RHISN TRANSPOSASE Y4QJ -----%3B E%3D7e-39 prf:2115270C%3B transposase [Weeksella zoohelcum]%3B E%3D6e-35 pir:S23782%3B transposase tnpA (insertion sequence IS91) - Escherichia%3B E%3D5e-14 gene gene519 http://www.ncbi.nlm.nih.gov/gene/?term=RB956 RB9561 RB9561 sigE sigE 5140686 5141429 + extracytoplasmic function alternative sigma factor PMID: 9139909 best DB hits: BLAST: gb:AAC45219.1%3B (U87308) extracytoplasmic function alternative%3B E%3D7e-05 pir:H70507%3B probable sigE protein - Mycobacterium tuberculosis%3B E%3D1e-04 gb:AAC45221.1%3B (U87307) extracytoplasmic function alternative%3B E%3D4e-04 COG: Rv1221%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D1e-05 PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D3.2e-06 gene gene5335 http://www.ncbi.nlm.nih.gov/gene/?term=RB9561 RB9563 RB9563 RB9563 5141426 5142799 + hypothetical protein gene gene5336 http://www.ncbi.nlm.nih.gov/gene/?term=RB9563 RB9565 RB9565 RB9565 5142812 5143795 - hydrolase best DB hits: BLAST: embl:CAA96346.1%3B (Z71679) ORF YNR064c [Saccharomyces cerevisiae]%3B E%3D3e-59 embl:CAB56721.1%3B (AL121600) hydrolase [Streptomyces%3B E%3D1e-53 embl:CAB56691.1%3B (AL121596) hydrolase [Streptomyces%3B E%3D6e-30 COG: YNR064c%3B COG0596 Predicted hydrolases or acyltransferases%3B E%3D3e-60 Rv2296%3B COG0596 Predicted hydrolases or acyltransferases (alpha/beta%3B E%3D1e-15 BS_yugF%3B COG0596 Predicted hydrolases or acyltransferases%3B E%3D2e-15 PFAM: PF00561%3B alpha/beta hydrolase fold%3B E%3D7.1e-28 gene gene5337 http://www.ncbi.nlm.nih.gov/gene/?term=RB9565 RB9566 RB9566 RB9566 5143784 5143894 + signal peptide gene gene5338 http://www.ncbi.nlm.nih.gov/gene/?term=RB9566 RB9567 RB9567 RB9567 5143904 5144374 - hypothetical protein best DB hits: BLAST: pir:C82971%3B conserved hypothetical protein PA5395 [imported] -%3B E%3D1e-46 pir:S77029%3B hypothetical protein sll0781 - Synechocystis sp. (strain%3B E%3D1e-42 embl:CAC14336.1%3B (AL445945) conserved hypothetical protein%3B E%3D3e-36 gene gene5339 http://www.ncbi.nlm.nih.gov/gene/?term=RB9567 RB9569 RB9569 mip mip 5144424 5145056 - hypothetical protein PMID: 8007818 best DB hits: BLAST: gb:AAB31024.1%3B (S71704) Mip%3D24 kda macrophage infectivity%3B E%3D3e-32 pir:D83354%3B hypothetical protein PA2331 [imported] - Pseudomonas%3B E%3D8e-14 pir:B81134%3B macrophage infectivity potentiator-related protein%3B E%3D1e-13 COG: PA2331%3B COG2128 Uncharacterized ACR%3B E%3D7e-15 PA0565%3B COG0599 Uncharacterized ACR%2C homolog of%3B E%3D0.002 PFAM: PF02627%3B Carboxymuconolactone decarboxylase%3B E%3D1e-06 gene gene5340 http://www.ncbi.nlm.nih.gov/gene/?term=RB9569 RB957 RB957 RB957 504889 505476 - integrase PMID: 7607529 best DB hits: BLAST: prf:2115270D%3B integrase [Weeksella zoohelcum]%3B E%3D7e-17 swissprot:P55632%3B Y4QK_RHISN INTEGRASERECOMBINASE Y4QK%3B E%3D9e-17 swissprot:P55429%3B Y4EF_RHISN INTEGRASERECOMBINASE Y4EF%3B E%3D5e-16 COG: PAB0255%3B COG0582 Integrase%3B E%3D5e-13 PFAM: PF00589%3B Phage integrase%3B E%3D2.6e-19 gene gene520 http://www.ncbi.nlm.nih.gov/gene/?term=RB957 RB9570 RB9570 hyfR hyfR 5145205 5146848 + hydrogenase-4 transcriptional activator best DB hits: BLAST: swissprot:P71229%3B HYFR_ECOLI HYDROGENASE-4 TRANSCRIPTIONAL%3B E%3D1e-83 pir:B65025%3B hypothetical protein b2491 - Escherichia coli (strain%3B E%3D1e-83 ddbj:BAA16380.1%3B (D90878) FORMATE HYDROGENLYASE TRANSCRIPTIONAL%3B E%3D1e-83 COG: hyfR_2%3B COG1221 NtrC family transcriptional regulators%2C ATPase%3B E%3D2e-77 hydG%3B COG2204 AAA superfamily ATPases with N-terminal receiver%3B E%3D4e-66 aq_1792_2%3B COG1221 NtrC family transcriptional regulators%2C ATPase%3B E%3D8e-66 PFAM: PF01590%3B GAF domain%3B E%3D9.9e-11 PF00158%3B Sigma-54 interaction domain%3B E%3D2.1e-138 gene gene5341 http://www.ncbi.nlm.nih.gov/gene/?term=RB9570 RB9572 RB9572 RB9572 5146973 5149477 + L-sorbosone dehydrogenase PMID: 7574579 best DB hits: BLAST: pir:F75417%3B L-sorbosone dehydrogenase - Deinococcus radiodurans%3B E%3D8e-06 swissprot:Q44091%3B SNDH_ACELI L-SORBOSONE DEHYDROGENASE (SNDH)%3B E%3D0.20 COG: DR1257%3B COG2133 Glucose/sorbosone dehydrogenases%3B E%3D8e-07 PFAM: PF01436%3B NHL repeat%3B E%3D0.028 gene gene5342 http://www.ncbi.nlm.nih.gov/gene/?term=RB9572 RB9574 RB9574 fabG fabG 5149549 5150355 - 3-oxoacyl-ACP reductase best DB hits: BLAST: swissprot:Q9X248%3B FABG_THEMA 3-OXOACYL-[ACYL-CARRIER PROTEIN]%3B E%3D7e-33 pir:E81695%3B 3-oxoacyl-(acyl carrier protein) reductase TC0508%3B E%3D3e-29 swissprot:P38004%3B FABG_CHLTR 3-OXOACYL-[ACYL-CARRIER PROTEIN]%3B E%3D2e-28 COG: TM1724%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D7e-34 CPn0296%3B COG1028 Dehydrogenases with different specificities%3B E%3D3e-28 BH2491%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D4e-27 PFAM: PF00106%3B short chain dehydrogenase%3B E%3D3.1e-58 PF00678%3B Short chain dehydrogenase/reduct%3B E%3D3.5e-06 gene gene5343 http://www.ncbi.nlm.nih.gov/gene/?term=RB9574 RB9577 RB9577 RB9577 5150346 5150501 - hypothetical protein gene gene5344 http://www.ncbi.nlm.nih.gov/gene/?term=RB9577 RB9578 RB9578 RB9578 5150392 5150592 + hypothetical protein gene gene5345 http://www.ncbi.nlm.nih.gov/gene/?term=RB9578 RB9581 RB9581 RB9581 5150535 5150921 - cinnamoyl ester hydrolase- a transcriptional regulator best DB hits: BLAST: swissprot:P37486%3B YYBR_BACSU HYPOTHETICAL 14.7 KDA PROTEIN IN%3B E%3D3e-25 ddbj:BAA19363.1%3B (AB001488) FUNCTION UNKNOWN%2C SIMILAR PRODUCT IN%3B E%3D3e-25 swissprot:P96673%3B YDEP_BACSU HYPOTHETICAL 15.2 KDA PROTEIN IN%3B E%3D3e-25 COG: BS_yybR%3B COG1733 Predicted transcriptional regulators%3B E%3D3e-26 PFAM: PF01638%3B Protein of unknown function DUF24%3B E%3D1.9e-44 gene gene5346 http://www.ncbi.nlm.nih.gov/gene/?term=RB9581 RB9584 RB9584 RB9584 5151075 5152061 + ripening-induced protein- Zn-containing oxidoreductase best DB hits: BLAST: embl:CAA04767.1%3B (AJ001445) ripening-induced protein [Fragaria%3B E%3D6e-31 pir:T10824%3B auxin-induced protein (clone MII-3) - mung bean -----%3B E%3D3e-29 swissprot:Q9ZUC1%3B QORL_ARATH QUINONE OXIDOREDUCTASE-LIKE PROTEIN%3B E%3D9e-27 COG: PA1137%3B COG0604 NADPH:quinone reductase and related Zn-dependent%3B E%3D2e-24 PA5427%3B COG1064 Zn-dependent alcohol dehydrogenases%3B E%3D4e-10 VNG1821G%3B COG0604 NADPH:quinone reductase and related Zn-dependent%3B E%3D5e-10 PFAM: PF00107%3B Zinc-binding dehydrogenases%3B E%3D2.8e-68 gene gene5347 http://www.ncbi.nlm.nih.gov/gene/?term=RB9584 RB9585 RB9585 RB9585 5152143 5153129 + coenzyme F420-dependent N5%2CN10-methylene tetrahydromethanopterin reductase best DB hits: BLAST: pir:E83496%3B hypothetical protein PA1186 [imported] - Pseudomonas%3B E%3D8e-50 embl:CAB76875.1%3B (AL159139) hypothetical protein SCL6.10%3B E%3D2e-12 swissprot:P71557%3B Y953_MYCTU HYPOTHETICAL 30.9 KDA PROTEIN RV0953C%3B E%3D7e-08 COG: PA1186%3B COG2141 Coenzyme F420-dependent N5%2CN10-methylene%3B E%3D8e-51 PFAM: PF00296%3B Bacterial luciferase%3B E%3D0.86 gene gene5348 http://www.ncbi.nlm.nih.gov/gene/?term=RB9585 RB9586 RB9586 RB9586 5153129 5153929 + oxidoreductase best DB hits: BLAST: ddbj:BAB03618.1%3B (AP002522) contains ESTs%3B E%3D3e-20 pir:S42651%3B hypothetical protein - rape ----- embl: CAB58175.1%3B E%3D1e-19 pir:T02520%3B hypothetical protein F13M22.4 - Arabidopsis thaliana%3B E%3D2e-18 COG: Rv0068%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D8e-17 VNG0479G%3B COG1028 Dehydrogenases with different specificities%3B E%3D1e-15 XF2716%3B COG1028 Dehydrogenases with different specificities (related%3B E%3D1e-15 PFAM: PF00106%3B short chain dehydrogenase%3B E%3D4.1e-22 gene gene5349 http://www.ncbi.nlm.nih.gov/gene/?term=RB9586 RB9587 RB9587 RB9587 5153993 5155975 + hypothetical protein PMID: 11932238 gene gene5350 http://www.ncbi.nlm.nih.gov/gene/?term=RB9587 RB9588 RB9588 RB9588 5156015 5156821 - hypothetical protein best DB hits: BLAST: embl:CAB62700.1%3B (AL133422) hypothetical protein SCM1.42c%3B E%3D7e-34 gb:AAF12648.1%3B AE001826_117 (AE001826) hypothetical protein%3B E%3D4e-33 gene gene5351 http://www.ncbi.nlm.nih.gov/gene/?term=RB9588 RB9591 RB9591 RB9591 5156987 5157931 + hypothetical protein best DB hits: BLAST: pir:T36867%3B hypothetical protein SCI51.04 - Streptomyces coelicolor%3B E%3D3e-50 pir:T36868%3B hypothetical protein SCI51.05c - Streptomyces coelicolor%3B E%3D7e-07 pir:D83072%3B conserved hypothetical protein PA4584 [imported] -%3B E%3D2e-05 gene gene5352 http://www.ncbi.nlm.nih.gov/gene/?term=RB9591 RB9592 RB9592 RB9592 5157928 5158737 + hypothetical protein best DB hits: BLAST: pir:T36868%3B hypothetical protein SCI51.05c - Streptomyces coelicolor%3B E%3D6e-54 swissprot:Q60312%3B Y002_METJA HYPOTHETICAL PROTEIN MJ0002 -----%3B E%3D1e-13 pir:T36867%3B hypothetical protein SCI51.04 - Streptomyces coelicolor%3B E%3D9e-07 gene gene5353 http://www.ncbi.nlm.nih.gov/gene/?term=RB9592 RB9593 RB9593 butB butB 5158697 5161153 + S-layer related protein [precursor] PMID: 7522196 best DB hits: BLAST: swissprot:P35824%3B SLAP_BACCI S-LAYER RELATED PROTEIN PRECURSOR%3B E%3D4e-04 PFAM: PF02368%3B Bacterial Ig-like domain (group 2%3B E%3D0.013 gene gene5354 http://www.ncbi.nlm.nih.gov/gene/?term=RB9593 RB9598 RB9598 RB9598 5161160 5162500 + hypothetical protein gene gene5355 http://www.ncbi.nlm.nih.gov/gene/?term=RB9598 RB9599 RB9599 RB9599 5161286 5162521 - hypothetical protein gene gene5356 http://www.ncbi.nlm.nih.gov/gene/?term=RB9599 RB9600 RB9600 RB9600 5162500 5164209 + serine proteinase best DB hits: BLAST: pir:A75582%3B serine proteinase%2C subtilase - Deinococcus%3B E%3D0.064 COG: DRA0283%3B COG1404 Subtilisin-like serine proteases%3B E%3D0.006 gene gene5357 http://www.ncbi.nlm.nih.gov/gene/?term=RB9600 RB9604 RB9604 RB9604 5164206 5167013 + vegetatible incompatibility protein HET-E1 PMID: 7557402 best DB hits: BLAST: swissprot:Q00808%3B HET1_PODAN VEGETATIBLE INCOMPATIBILITY PROTEIN%3B E%3D3e-21 pir:T41075%3B hypothetical WD-repeat protein - fission yeast%3B E%3D9e-17 embl:CAA04998.1%3B (AJ001774) vanadium chloroperoxidase [Anabaena%3B E%3D2e-16 COG: YCR084c%3B COG2319 WD40 repeat protein%3B E%3D9e-14 PFAM: PF00400%3B WD domain%2C G-beta repeat%3B E%3D0.058 gene gene5358 http://www.ncbi.nlm.nih.gov/gene/?term=RB9604 RB9606 RB9606 RB9606 5167135 5168976 + cytoskeleton assembly control protein SLA1- secreted or membrane associated protein PMID: 8335689 best DB hits: BLAST: embl:CAA84826.1%3B (Z35768) ORF YBL007c [Saccharomyces cerevisiae]%3B E%3D0.67 gene gene5359 http://www.ncbi.nlm.nih.gov/gene/?term=RB9606 RB9610 RB9610 acrA1 acrA1 5169123 5170628 + AcrA1 protein best DB hits: BLAST: pir:F70974%3B probable acrA1 protein - Mycobacterium tuberculosis%3B E%3D4e-15 gb:AAG31130.1%3B AF299336_7 (AF299336) MxcG [Stigmatella aurantiaca]%3B E%3D6e-12 pir:T37054%3B hypothetical protein SCJ21.05 - Streptomyces coelicolor%3B E%3D7e-10 COG: Rv3391_1%3B COG0451 Nucleoside-diphosphate-sugar epimerases%3B E%3D4e-16 PA4078_2%3B COG3320 Epimerase domains of multifunctional non-ribosomal%3B E%3D2e-04 PFAM: PF01073%3B 3-beta hydroxysteroid dehydro%3B E%3D0.7 gene gene5360 http://www.ncbi.nlm.nih.gov/gene/?term=RB9610 RB9611 RB9611 RB9611 5170773 5172827 - ABC transporter ATP-binding protein best DB hits: BLAST: pir:C81187%3B ABC transporter ATP-binding protein NMB0549 [imported]%3B E%3D3e-97 pir:C81916%3B probable ABC transporter ATP-binding protein NMA0729%3B E%3D8e-96 gb:AAG55261.1%3B AE005269_5 (AE005269) ATP-binding%3B E%3D7e-94 COG: BS_yknY%3B COG1136 ABC-type (unclassified) transport system%2C ATPase%3B E%3D1e-56 NMB0549_2%3B COG0577 Predicted permease%3B E%3D5e-46 PFAM: PF00735%3B Cell division protein%3B E%3D0.7 PF00005%3B ABC transporter%3B E%3D3e-64 PF02687%3B Predicted permease%3B E%3D0.2 gene gene5361 http://www.ncbi.nlm.nih.gov/gene/?term=RB9611 RB9612 RB9612 syrD syrD 5172824 5174467 - ATP-binding protein syrD-ATP binding protein of ABC-type transporter PMID: 8231810 best DB hits: BLAST: swissprot:P33951%3B SYRD_PSESY ATP-BINDING PROTEIN SYRD -----%3B E%3D8e-65 pir:G83345%3B pyoverdine biosynthesis protein PvdE PA2397 [imported] -%3B E%3D8e-65 pir:S54001%3B pyoverdine synthetase E - Pseudomonas aeruginosa -----%3B E%3D9e-64 COG: PA2397%3B COG1132 ABC-type multidrug/protein/lipid transport system%2C%3B E%3D8e-66 APE1253%3B COG1136 ABC-type (unclassified) transport system%2C ATPase%3B E%3D2e-09 XF1081%3B COG1132 ABC-type multidrug/protein/lipid transport system%2C%3B E%3D2e-07 PFAM: PF00664%3B ABC transporter transmembrane%3B E%3D0.25 PF00470%3B RecF protein%3B E%3D0.13 PF02223%3B Thymidylate kinase%3B E%3D0.0054 gene gene5362 http://www.ncbi.nlm.nih.gov/gene/?term=RB9612 RB9613 RB9613 RB9613 5174489 5174650 - hypothetical protein gene gene5363 http://www.ncbi.nlm.nih.gov/gene/?term=RB9613 RB9614 RB9614 sur1 sur1 5174663 5175448 - surface protein Sur1 best DB hits: BLAST: swissprot:Q10323%3B YD6B_SCHPO HYPOTHETICAL 42.2 KD PROTEIN%3B E%3D1e-28 pir:T38533%3B similar to S. cerevisiae sur1 protein - fission yeast%3B E%3D4e-27 gb:AAB68308.1%3B (U39205) Sur1p [Saccharomyces cerevisiae]%3B E%3D8e-26 gene gene5364 http://www.ncbi.nlm.nih.gov/gene/?term=RB9614 RB9617 RB9617 mtfB mtfB 5175471 5176667 - mannosyltransferase PMID: 8162191 PMID: 7536735 best DB hits: BLAST: pir:I76776%3B Mannosyltransferase (EC 5.-.-.-) B - Escherichia coli%3B E%3D2e-26 gb:AAF04384.1%3B AF189151_7 (AF189151) WbdB%3B mannosyl transferase B%3B E%3D2e-26 gb:AAC38771.1%3B (AF010182) glycosyltransferase WbpY [Pseudomonas%3B E%3D3e-21 COG: PA5448%3B COG0438 Predicted glycosyltransferases%3B E%3D3e-22 PFAM: PF00534%3B Glycosyl transferases group 1%3B E%3D2.1e-24 gene gene5365 http://www.ncbi.nlm.nih.gov/gene/?term=RB9617 RB9619 RB9619 RB9619 5176761 5177939 - hypothetical protein gene gene5366 http://www.ncbi.nlm.nih.gov/gene/?term=RB9619 RB962 RB962 RB962 505439 505738 - hypothetical protein gene gene521 http://www.ncbi.nlm.nih.gov/gene/?term=RB962 RB9620 RB9620 RB9620 5177920 5179596 - hypothetical protein gene gene5367 http://www.ncbi.nlm.nih.gov/gene/?term=RB9620 RB9623 RB9623 RB9623 5179518 5180189 - sugar transferase- a glycosyl transferase best DB hits: BLAST: embl:CAA69119.1%3B (Y07786) sugar transferase [Vibrio cholerae]%3B E%3D3e-13 ddbj:BAA33603.1%3B (AB012956) probable glycosyl transferase [Vibrio%3B E%3D3e-13 pir:T44330%3B glycosyl transferase homolog [imported] - Vibrio%3B E%3D3e-12 COG: BH3661%3B COG0463 Glycosyltransferases involved in cell wall%3B E%3D7e-13 RP339%3B COG0463 Glycosyltransferases involved in cell wall biogenesis%3B E%3D5e-10 HI0868%3B COG0463 Glycosyltransferases involved in cell wall%3B E%3D4e-09 PFAM: PF00535%3B Glycosyl transferase%3B E%3D1.9e-44 gene gene5368 http://www.ncbi.nlm.nih.gov/gene/?term=RB9623 RB9624 RB9624 RB9624 5180186 5181259 - hypothetical protein gene gene5369 http://www.ncbi.nlm.nih.gov/gene/?term=RB9624 RB9625 RB9625 RB9625 5181277 5181714 - hypothetical protein gene gene5370 http://www.ncbi.nlm.nih.gov/gene/?term=RB9625 RB9626 RB9626 RB9626 5181753 5181959 + hypothetical protein gene gene5371 http://www.ncbi.nlm.nih.gov/gene/?term=RB9626 RB9627 RB9627 mtfA mtfA 5181911 5183374 + mannosyltransferase best DB hits: BLAST: pir:S74764%3B hypothetical protein slr1063 - Synechocystis sp. (strain%3B E%3D2e-10 gb:AAB91182.1%3B (AE001103) mannosyltransferase A (mtfA)%3B E%3D3e-10 pir:S77338%3B LPS glycosyltransferase icsA - Synechocystis sp. (strain%3B E%3D0.004 COG: AF0045%3B COG0438 Predicted glycosyltransferases%3B E%3D3e-11 PFAM: PF00534%3B Glycosyl transferases group 1%3B E%3D9.2e-10 gene gene5372 http://www.ncbi.nlm.nih.gov/gene/?term=RB9627 RB9629 RB9629 desC desC 5183393 5184385 - delta-9 desaturase PMID: 9106218 best DB hits: BLAST: gb:AAB61353.1%3B (U36390) delta-9 desaturase [Synechococcus sp. PCC%3B E%3D2e-39 pir:S75765%3B stearoyl-CoA desaturase (EC 1.14.99.5) 1 - Synechocystis%3B E%3D1e-36 pir:S57643%3B stearoyl-CoA desaturase (EC 1.14.99.5) - Synechococcus%3B E%3D2e-36 COG: sll0541%3B COG1398 Fatty-acid desaturase%3B E%3D1e-37 PFAM: PF01069%3B Fatty acid desaturase%3B E%3D7.5e-32 gene gene5373 http://www.ncbi.nlm.nih.gov/gene/?term=RB9629 RB963 RB963 RB963 505900 506019 + hypothetical protein gene gene522 http://www.ncbi.nlm.nih.gov/gene/?term=RB963 RB9631 RB9631 RB9631 5184595 5185926 - hypothetical protein best DB hits: BLAST: gb:AAF15891.2%3B AF204805_1 (AF204805) NosA [Nostoc sp. GSV224]%3B E%3D0.19 PFAM: PF00668%3B Condensation domain%3B E%3D0.00055 gene gene5374 http://www.ncbi.nlm.nih.gov/gene/?term=RB9631 RB9635 RB9635 RB9635 5185973 5187031 - hypothetical protein gene gene5375 http://www.ncbi.nlm.nih.gov/gene/?term=RB9635 RB9637 RB9637 RB9637 5187058 5188608 + glycosyl transferase best DB hits: BLAST: pir:B75096%3B glycosyl transferase PAB0772 - Pyrococcus abyssi (strain%3B E%3D8e-23 gb:AAC44786.1%3B (U70729) MigA [Pseudomonas aeruginosa]%3B E%3D2e-22 pir:B83557%3B probable glycosyl transferase PA0705 [imported] -%3B E%3D2e-22 COG: PAB0772%3B COG0463 Glycosyltransferases involved in cell wall%3B E%3D7e-24 RP339%3B COG0463 Glycosyltransferases involved in cell wall biogenesis%3B E%3D2e-17 PA5000%3B COG0463 Glycosyltransferases involved in cell wall%3B E%3D3e-17 PFAM: PF00535%3B Glycosyl transferase%3B E%3D3.7e-41 gene gene5376 http://www.ncbi.nlm.nih.gov/gene/?term=RB9637 RB964 RB964 RB964 506032 506475 + hypothetical protein gene gene523 http://www.ncbi.nlm.nih.gov/gene/?term=RB964 RB9640 RB9640 RB9640 5188617 5189891 - ceramide glucosyltransferase best DB hits: BLAST: embl:CAC11705.1%3B (AL445064) hypothetical protein [Thermoplasma%3B E%3D5e-14 pir:S75560%3B ceramide glucosyltransferase - Synechocystis sp. (strain%3B E%3D2e-11 ddbj:BAA09451.1%3B (D50840) ceramide glucosyltransferase [Homo%3B E%3D0.004 COG: Ta0565%3B COG1215 Glycosyltransferases%2C probably involved in cell wall%3B E%3D5e-15 slr0813%3B COG1215 Glycosyltransferases%2C probably involved in cell%3B E%3D2e-12 PFAM: PF00535%3B Glycosyl transferase%3B E%3D0.014 gene gene5377 http://www.ncbi.nlm.nih.gov/gene/?term=RB9640 RB9641 RB9641 RB9641 5189877 5190098 + hypothetical protein gene gene5378 http://www.ncbi.nlm.nih.gov/gene/?term=RB9641 RB9642 RB9642 RB9642 5190092 5190214 + hypothetical protein gene gene5379 http://www.ncbi.nlm.nih.gov/gene/?term=RB9642 RB9643 RB9643 RB9643 5190264 5191526 + hypothetical protein best DB hits: BLAST: gb:AAK03081.1%3B (AE006139) unknown [Pasteurella multocida]%3B E%3D8e-11 gb:AAG55260.1%3B AE005269_4 (AE005269) membrane protein%3B E%3D5e-10 pir:F64826%3B probable membrane protein b0878 - Escherichia coli%3B E%3D1e-09 COG: ybjY%3B COG0845 Membrane-fusion protein%3B E%3D1e-10 VC1410%3B COG1566 Multidrug resistance efflux pump%3B E%3D6e-06 NMB0548%3B COG0845 Membrane-fusion protein%3B E%3D1e-05 PFAM: PF00529%3B HlyD family secretion protein%3B E%3D7.9e-05 gene gene5380 http://www.ncbi.nlm.nih.gov/gene/?term=RB9643 RB9646 RB9646 aprF aprF 5191659 5193572 - AprF- outer membrane efflux protein or secreted alkaline phosphatase PMID: 11222613 best DB hits: BLAST: gb:AAF87592.1%3B AF286062_5 (AF286062) AprF [Pseudomonas%3B E%3D0.29 gb:AAF01330.1%3B (AF188365) outer membrane protein [Pseudomonas%3B E%3D0.64 PFAM: PF02321%3B Outer membrane efflux protein%3B E%3D2.3e-05 gene gene5381 http://www.ncbi.nlm.nih.gov/gene/?term=RB9646 RB9648 RB9648 RB9648 5193858 5195090 - ceramide glucosyltransferase best DB hits: BLAST: embl:CAC11705.1%3B (AL445064) hypothetical protein [Thermoplasma%3B E%3D9e-09 pir:S75560%3B ceramide glucosyltransferase - Synechocystis sp. (strain%3B E%3D3e-08 ddbj:BAA09451.1%3B (D50840) ceramide glucosyltransferase [Homo%3B E%3D7e-05 COG: Ta0565%3B COG1215 Glycosyltransferases%2C probably involved in cell wall%3B E%3D8e-10 slr0813%3B COG1215 Glycosyltransferases%2C probably involved in cell%3B E%3D3e-09 sll1004%3B COG0463 Glycosyltransferases involved in cell wall%3B E%3D4e-05 PFAM: PF00535%3B Glycosyl transferase%3B E%3D2e-07 gene gene5382 http://www.ncbi.nlm.nih.gov/gene/?term=RB9648 RB965 RB965 RB965 506479 506949 + signal peptide gene gene524 http://www.ncbi.nlm.nih.gov/gene/?term=RB965 RB9650 RB9650 RB9650 5195258 5196670 - N-acetylgalactosamine 6-sulfatase (GALNS) PMID: 8020961 best DB hits: BLAST: ddbj:BAA04535.1%3B (D17629) N-acetylgalactosamine 6-sulfate%3B E%3D5e-38 embl:CAA36398.1%3B (X52150) arylsulphatase a [Homo sapiens]%3B E%3D4e-37 gb:AAB03341.1%3B (U62317) arylsulfatase A [Homo sapiens]%3B E%3D4e-37 COG: PA0183%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D6e-29 TM1703%3B COG1368 Phosphoglycerol transferase and related proteins%2C%3B E%3D2e-04 VNG1337C%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D8e-04 PFAM: PF00884%3B Sulfatase%3B E%3D5.7e-53 gene gene5383 http://www.ncbi.nlm.nih.gov/gene/?term=RB9650 RB9651 RB9651 RB9651 5196643 5198277 - sialic acid-specific 9-O-acetylesterase PMID: 97078679 PMID: 8662838 PMID: 10464298 PMID: 8918804 best DB hits: BLAST: embl:CAA67214.1%3B (X98625) sialic acid-specific 9-O-acetylesterase%3B E%3D3e-37 gb:AAB07813.1%3B (U40408) sialic-acid O-acetylesterase [Mus%3B E%3D6e-37 pir:T46250%3B hypothetical protein DKFZp761A051.1 - human (fragment)%3B E%3D1e-34 gene gene5384 http://www.ncbi.nlm.nih.gov/gene/?term=RB9651 RB9653 RB9653 RB9653 5198245 5198721 + hypothetical protein gene gene5385 http://www.ncbi.nlm.nih.gov/gene/?term=RB9653 RB9654 RB9654 pta pta 5198833 5200932 + phosphate acetyltransferase catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate%3B when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate gene gene5386 http://www.ncbi.nlm.nih.gov/gene/?term=RB9654 RB9655 RB9655 ackA ackA 5200863 5202038 + acetate kinase PMID: 10074080 best DB hits: BLAST: swissprot:O52594%3B ACKA_CLOTM ACETATE KINASE (ACETOKINASE) -----%3B E%3D7e-71 swissprot:Q9WYB1%3B ACKA_THEMA ACETATE KINASE (ACETOKINASE) -----%3B E%3D2e-68 swissprot:P38502%3B ACKA_METTE ACETATE KINASE (ACETOKINASE) -----%3B E%3D5e-66 COG: TM0274%3B COG0282 Acetate kinase%3B E%3D2e-69 PFAM: PF00871%3B Acetokinase%3B E%3D3.3e-06 gene gene5387 http://www.ncbi.nlm.nih.gov/gene/?term=RB9655 RB9657 RB9657 RB9657 5202179 5203258 + dTDP-4-keto-L-6-deoxy-hexose 2%2C3-reductase- a NADP-dependent oxidoreductase best DB hits: BLAST: embl:CAC18708.1%3B (AL451182) aldoketoreductase%3B E%3D9e-18 embl:CAA74709.1%3B (Y14332) dTDP-4-keto-L-6-deoxy-hexose%3B E%3D6e-17 ddbj:BAB04730.1%3B (AP001510) oxidoreductase [Bacillus halodurans]%3B E%3D2e-15 COG: BH1011%3B COG0667 Predicted oxidoreductases (related to aryl-alcohol%3B E%3D2e-16 Ta0027%3B COG0656 Aldo/keto reductases%2C related to diketogulonate%3B E%3D3e-12 BS_iolS%3B COG0667 Predicted oxidoreductases (related to aryl-alcohol%3B E%3D4e-12 PFAM: PF00248%3B Aldo/keto reductase%3B E%3D1.6e-13 gene gene5388 http://www.ncbi.nlm.nih.gov/gene/?term=RB9657 RB9658 RB9658 RB9658 5203305 5203856 - hypothetical protein best DB hits: BLAST: pir:D82155%3B hypothetical protein VC1816 [imported] - Vibrio cholerae%3B E%3D1e-16 ddbj:BAA89380.1%3B (AB025342) ORF6 [Moritella marina]%3B E%3D2e-15 pir:G75556%3B hypothetical protein - Deinococcus radiodurans (strain%3B E%3D2e-13 COG: DR0127%3B COG0666 Ankyrin repeat proteins%3B E%3D2e-14 gene gene5389 http://www.ncbi.nlm.nih.gov/gene/?term=RB9658 RB9659 RB9659 RB9659 5203888 5204784 - hypothetical protein best DB hits: BLAST: gb:AAG58178.1%3B AE005533_11 (AE005533) orf%2C hypothetical protein%3B E%3D1e-59 swissprot:P24197%3B YGID_ECOLI HYPOTHETICAL 29.9 KD PROTEIN IN%3B E%3D6e-59 pir:S22362%3B hypothetical protein C - Escherichia coli ----- gb:%3B E%3D1e-54 COG: ygiD%3B COG3384 Uncharacterized protein%3B E%3D6e-60 gene gene5390 http://www.ncbi.nlm.nih.gov/gene/?term=RB9659 RB9660 RB9660 RB9660 5204810 5205271 - membrane associated or secreted protein best DB hits: BLAST: ddbj:BAB05804.1%3B (AP001514) BH2085~~unknown [Bacillus halodurans]%3B E%3D5e-19 gene gene5391 http://www.ncbi.nlm.nih.gov/gene/?term=RB9660 RB9661 RB9661 araC araC 5205359 5206723 + AraC family transcriptional regulator best DB hits: BLAST: pir:T35901%3B probable araC family transcriptional regulator -%3B E%3D1e-17 swissprot:Q03320%3B ARAL_STRAT ARAC-LIKE TRANSCRIPTION%3B E%3D2e-16 swissprot:P35319%3B ARAL_STRLI ARAC-LIKE TRANSCRIPTION%3B E%3D2e-15 COG: ykgD%3B COG2207 AraC-type DNA-binding domain-containing proteins%3B E%3D2e-12 VCA1018_1%3B COG2169 Adenosine deaminase%3B E%3D3e-05 VCA1074%3B COG2207 AraC-type DNA-binding domain-containing proteins%3B E%3D3e-05 PFAM: PF00440%3B Bacterial regulatory proteins%2C tetR%3B E%3D0.37 PF00165%3B Bacterial regulatory helix-turn-heli%3B E%3D3.5e-25 PF01047%3B MarR family%3B E%3D0.25 gene gene5392 http://www.ncbi.nlm.nih.gov/gene/?term=RB9661 RB9664 RB9664 RB9664 5206898 5209192 + inter-alpha-trypsin inhibitor domain-containing protein PMID: 8830057 best DB hits: BLAST: gb:AAD05198.1%3B (U43163) inter-alpha-trypsin inhibitor family%3B E%3D3e-24 ddbj:BAA07602.1%3B (D38595) inter-alpha-trypsin inhibitor family%3B E%3D4e-24 ddbj:BAA07536.1%3B (D38535) PK-120 precursor [Homo sapiens]%3B E%3D8e-24 COG: sll0103%3B COG2304 Protein containing von Willebrand factor (vWF) type%3B E%3D1e-04 PFAM: PF02138%3B Beige/BEACH domain%3B E%3D0.089 PF00092%3B von Willebrand factor type A domain%3B E%3D0.084 gene gene5393 http://www.ncbi.nlm.nih.gov/gene/?term=RB9664 RB9666 RB9666 RB9666 5209189 5209872 + hypothetical protein best DB hits: PFAM: PF01694%3B Rhomboid family%3B E%3D0.038 gene gene5394 http://www.ncbi.nlm.nih.gov/gene/?term=RB9666 RB9668 RB9668 RB9668 5209887 5210069 - hypothetical protein gene gene5395 http://www.ncbi.nlm.nih.gov/gene/?term=RB9668 RB9669 RB9669 RB9669 5210092 5210265 - hypothetical protein gene gene5396 http://www.ncbi.nlm.nih.gov/gene/?term=RB9669 RB967 RB967 RB967 507068 507280 - hypothetical protein gene gene525 http://www.ncbi.nlm.nih.gov/gene/?term=RB967 RB9670 RB9670 RB9670 5210290 5211006 - hypothetical protein best DB hits: BLAST: pir:E81971%3B hypothetical protein NMA0532 [imported] - Neisseria%3B E%3D0.079 pir:G81862%3B conserved hypothetical protein NMA1675 [imported] -%3B E%3D0.079 pir:F81882%3B hypothetical protein NMA1155 [imported] - Neisseria%3B E%3D0.17 gene gene5397 http://www.ncbi.nlm.nih.gov/gene/?term=RB9670 RB9673 RB9673 RB9673 5211126 5211281 + hypothetical protein gene gene5398 http://www.ncbi.nlm.nih.gov/gene/?term=RB9673 RB9674 RB9674 pepX pepX 5211283 5213163 + x-prolyl-dipeptidyl aminopeptidase catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue gene gene5399 http://www.ncbi.nlm.nih.gov/gene/?term=RB9674 RB9676 RB9676 RB9676 5213215 5214558 - signal peptide gene gene5400 http://www.ncbi.nlm.nih.gov/gene/?term=RB9676 RB9679 RB9679 RB9679 5214695 5216233 + hypothetical protein best DB hits: BLAST: gb:AAG54525.1%3B AE005198_6 (AE005198) Z0256 gene product%3B E%3D2e-16 pir:D83634%3B hypothetical protein PA0079 [imported] - Pseudomonas%3B E%3D3e-16 pir:E82499%3B hypothetical protein VCA0114 [imported] - Vibrio%3B E%3D2e-14 gene gene5401 http://www.ncbi.nlm.nih.gov/gene/?term=RB9679 RB968 RB968 RB968 507079 507840 - hypothetical protein gene gene526 http://www.ncbi.nlm.nih.gov/gene/?term=RB968 RB9684 RB9684 RB9684 5216230 5216877 + hypothetical protein best DB hits: BLAST: pir:F83350%3B hypothetical protein PA2362 [imported] - Pseudomonas%3B E%3D3e-05 pir:G83437%3B hypothetical protein PA1668 [imported] - Pseudomonas%3B E%3D0.006 gene gene5402 http://www.ncbi.nlm.nih.gov/gene/?term=RB9684 RB9685 RB9685 RB9685 5216911 5218644 + hypothetical protein best DB hits: BLAST: embl:CAC05884.1%3B (AL391754) penicillin-binding protein%3B E%3D0.22 gene gene5403 http://www.ncbi.nlm.nih.gov/gene/?term=RB9685 RB9687 RB9687 RB9687 5218795 5219868 + hypothetical protein best DB hits: BLAST: pir:G83634%3B hypothetical protein PA0082 [imported] - Pseudomonas%3B E%3D1e-34 pir:D83350%3B hypothetical protein PA2360 [imported] - Pseudomonas%3B E%3D3e-10 gene gene5404 http://www.ncbi.nlm.nih.gov/gene/?term=RB9687 RB9689 RB9689 RB9689 5219934 5220461 + hypothetical protein best DB hits: BLAST: pir:H83634%3B conserved hypothetical protein PA0083 [imported] -%3B E%3D2e-54 gb:AAB92577.1%3B (AF037441) 19.5 kDa protein [Edwardsiella%3B E%3D7e-29 pir:A83351%3B conserved hypothetical protein PA2365 [imported] -%3B E%3D8e-28 gene gene5405 http://www.ncbi.nlm.nih.gov/gene/?term=RB9689 RB969 RB969 RB969 507238 507945 + signal peptide gene gene527 http://www.ncbi.nlm.nih.gov/gene/?term=RB969 RB9690 RB9690 RB9690 5220509 5222011 + hypothetical protein best DB hits: BLAST: pir:A83635%3B conserved hypothetical protein PA0084 [imported] -%3B E%3D0.0 gb:AAB92576.1%3B (AF037441) 54.5 kDa protein [Edwardsiella%3B E%3D1e-110 pir:B83351%3B conserved hypothetical protein PA2366 [imported] -%3B E%3D1e-109 gene gene5406 http://www.ncbi.nlm.nih.gov/gene/?term=RB9690 RB9692 RB9692 RB9692 5222065 5222544 + hypothetical protein best DB hits: BLAST: pir:A83349%3B hypothetical protein PA2367 [imported] - Pseudomonas%3B E%3D9e-13 gb:AAB92575.1%3B (AF037441) 17.8 kDa protein [Edwardsiella%3B E%3D0.006 COG: PA2367%3B COG3157 Hemolysin-coregulated protein (uncharacterized)%3B E%3D9e-14 gene gene5407 http://www.ncbi.nlm.nih.gov/gene/?term=RB9692 RB9693 RB9693 RB9693 5222556 5223110 + hypothetical protein best DB hits: BLAST: pir:D83635%3B hypothetical protein PA0087 [imported] - Pseudomonas%3B E%3D6e-06 gb:AAB92574.1%3B (AF037441) 18.8 kDa protein [Edwardsiella%3B E%3D1e-04 gene gene5408 http://www.ncbi.nlm.nih.gov/gene/?term=RB9693 RB9696 RB9696 RB9696 5223290 5225191 + hypothetical protein best DB hits: BLAST: pir:E83635%3B hypothetical protein PA0088 [imported] - Pseudomonas%3B E%3D1e-139 pir:C83349%3B hypothetical protein PA2369 [imported] - Pseudomonas%3B E%3D2e-61 pir:A82499%3B hypothetical protein VCA0110 [imported] - Vibrio%3B E%3D3e-40 gene gene5409 http://www.ncbi.nlm.nih.gov/gene/?term=RB9696 RB9698 RB9698 RB9698 5225279 5226328 + hypothetical protein best DB hits: BLAST: pir:F83635%3B hypothetical protein PA0089 [imported] - Pseudomonas%3B E%3D4e-31 pir:D83349%3B hypothetical protein PA2370 [imported] - Pseudomonas%3B E%3D1e-05 gb:AAG54528.1%3B AE005198_9 (AE005198) Z0259 gene product%3B E%3D0.001 gene gene5410 http://www.ncbi.nlm.nih.gov/gene/?term=RB9698 RB9699 RB9699 RB9699 5226252 5228345 + hypothetical protein best DB hits: BLAST: pir:H83635%3B conserved hypothetical protein PA0091 [imported] -%3B E%3D1e-104 pir:D83633%3B conserved hypothetical protein PA0095 [imported] -%3B E%3D1e-101 pir:G83310%3B conserved hypothetical protein PA2685 [imported] -%3B E%3D5e-97 gene gene5411 http://www.ncbi.nlm.nih.gov/gene/?term=RB9699 RB9700 RB9700 RB9700 5228428 5229342 + hypothetical protein gene gene5412 http://www.ncbi.nlm.nih.gov/gene/?term=RB9700 RB9702 RB9702 RB9702 5229342 5229632 + hypothetical protein best DB hits: BLAST: pir:H83542%3B hypothetical protein PA0824 [imported] - Pseudomonas%3B E%3D0.042 pir:F82478%3B hypothetical protein VCA0284 [imported] - Vibrio%3B E%3D0.18 gb:AAG54900.1%3B AE005236_1 (AE005236) Z0705 gene product%3B E%3D0.36 gene gene5413 http://www.ncbi.nlm.nih.gov/gene/?term=RB9702 RB9704 RB9704 RB9704 5229636 5234027 + hypothetical protein gene gene5414 http://www.ncbi.nlm.nih.gov/gene/?term=RB9704 RB9707 RB9707 RB9707 5234044 5234844 + hypothetical protein gene gene5415 http://www.ncbi.nlm.nih.gov/gene/?term=RB9707 RB971 RB971 RB971 508101 509411 - hypothetical protein gene gene528 http://www.ncbi.nlm.nih.gov/gene/?term=RB971 RB9710 RB9710 RB9710 5235132 5240027 - hypothetical protein best DB hits: PFAM: PF02869%3B Eukaryotic initiation factor 5A hypu%3B E%3D0.64 PF00092%3B von Willebrand factor type A domain%3B E%3D0.00092 gene gene5416 http://www.ncbi.nlm.nih.gov/gene/?term=RB9710 RB9713 RB9713 RB9713 5240049 5243297 - large%2C multifunctional secreted protein best DB hits: BLAST: pir:T36423%3B probable large%2C multifunctional secreted protein -%3B E%3D8e-23 embl:CAB45032.1%3B (AL078635) large multi-functional protein%3B E%3D2e-22 pir:C75617%3B probable oxidoreductase - Deinococcus radiodurans%3B E%3D0.40 PFAM: PF01436%3B NHL repeat%3B E%3D0.1 gene gene5417 http://www.ncbi.nlm.nih.gov/gene/?term=RB9713 RB9717 RB9717 RB9717 5243612 5243833 - hypothetical protein gene gene5418 http://www.ncbi.nlm.nih.gov/gene/?term=RB9717 RB9720 RB9720 RB9720 5243888 5244346 + hypothetical protein gene gene5419 http://www.ncbi.nlm.nih.gov/gene/?term=RB9720 RB9722 RB9722 RB9722 5244321 5246186 - phospholipid-binding protein best DB hits: BLAST: swissprot:O67293%3B YC50_AQUAE HYPOTHETICAL PROTEIN AQ_1250 -----%3B E%3D2e-09 swissprot:Q9Z729%3B Y877_CHLPN HYPOTHETICAL PROTEIN CPN0877CP0992%3B E%3D2e-07 swissprot:O26373%3B Y273_METTH HYPOTHETICAL PROTEIN MTH273 -----%3B E%3D4e-07 COG: aq_1250%3B COG1881 Phospholipid-binding protein%3B E%3D2e-10 gene gene5420 http://www.ncbi.nlm.nih.gov/gene/?term=RB9722 RB9724 RB9724 RB9724 5246183 5246920 - signal peptide gene gene5421 http://www.ncbi.nlm.nih.gov/gene/?term=RB9724 RB9725 RB9725 RB9725 5246921 5247988 - hypothetical protein gene gene5422 http://www.ncbi.nlm.nih.gov/gene/?term=RB9725 RB9728 RB9728 rfaY rfaY 5247985 5248503 - RNA polymerase sigma factor rfaY PMID: 8052622 best DB hits: BLAST: swissprot:P46358%3B RFAY_XANCP PROBABLE RNA POLYMERASE SIGMA FACTOR%3B E%3D5e-05 swissprot:P37978%3B CNRH_ALCEU RNA POLYMERASE SIGMA FACTOR CNRH%3B E%3D9e-04 pir:C69826%3B RNA polymerase ECF-type sigma factor homolog yhdM -%3B E%3D0.001 COG: BS_yhdM%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D1e-04 PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D4.8e-07 gene gene5423 http://www.ncbi.nlm.nih.gov/gene/?term=RB9728 RB973 RB973 RB973 509484 511727 - mucin-desulfating sulfatase (N-acetylglucosamine-6-sulfatase) PMID: 10809675 best DB hits: BLAST: gb:AAF72520.1%3B AF248951_1 (AF248951) mucin-desulfating sulfatase%3B E%3D1e-111 swissprot:Q29460%3B PA1G_BOVIN PLATELET-ACTIVATING FACTOR%3B E%3D4e-23 pdb:1ES9%3B A Chain A%2C X-Ray Crystal Structure Of R22k Mutant Of The%3B E%3D4e-23 COG: PA0183%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D4e-23 PAB0793%3B COG2194 Predicted membrane-associated%2C metal-dependent%3B E%3D3e-04 yejM%3B COG3083 Predicted hydrolase of alkaline phosphatase%3B E%3D0.005 PFAM: PF00884%3B Sulfatase%3B E%3D2.8e-33 PF00657%3B Lipase/Acylhydrolase with GDSL-li%3B E%3D0.033 PF02266%3B Platelet activating factor acetyl%3B E%3D2.5e-24 gene gene529 http://www.ncbi.nlm.nih.gov/gene/?term=RB973 RB9731 RB9731 RB9731 5248458 5248703 + hypothetical protein gene gene5424 http://www.ncbi.nlm.nih.gov/gene/?term=RB9731 RB9732 RB9732 RB9732 5248700 5250529 + gluconolactonase best DB hits: BLAST: pir:B82698%3B gluconolactonase precursor XF1297 [imported] - Xylella%3B E%3D4e-05 embl:CAB59581.1%3B (AL132662) possible gluconolactonase precursor%3B E%3D0.028 pir:B83340%3B hypothetical protein PA2451 [imported] - Pseudomonas%3B E%3D0.036 COG: XF1297%3B COG3386 Uncharacterized protein%3B E%3D4e-06 PA2451%3B COG2382 Enterochelin esterase and related enzymes%3B E%3D0.003 gene gene5425 http://www.ncbi.nlm.nih.gov/gene/?term=RB9732 RB9736 RB9736 RB9736 5250678 5250788 - hypothetical protein gene gene5426 http://www.ncbi.nlm.nih.gov/gene/?term=RB9736 RB9737 RB9737 RB9737 5250930 5251292 + hypothetical protein gene gene5427 http://www.ncbi.nlm.nih.gov/gene/?term=RB9737 RB9739 RB9739 RB9739 5251375 5251554 + hypothetical protein gene gene5428 http://www.ncbi.nlm.nih.gov/gene/?term=RB9739 RB974 RB974 RB974 511880 512353 + hypothetical protein best DB hits: BLAST: pir:A82990%3B conserved hypothetical protein PA5247 [imported] -%3B E%3D2e-27 swissprot:P52089%3B YPAH_PSELE HYPOTHETICAL 21.7 KD PROTEIN IN PAHZ1%3B E%3D3e-26 pir:C64767%3B yaiI protein - Escherichia coli ----- gb:%3B E%3D4e-26 COG: PA5247%3B COG1671 Uncharacterized BCR%3B E%3D2e-28 PFAM: PF02639%3B Uncharacterized BCR%2C YaiI/YqxD%3B E%3D7e-46 gene gene530 http://www.ncbi.nlm.nih.gov/gene/?term=RB974 RB9740 RB9740 RB9740 5251409 5251600 - hypothetical protein gene gene5429 http://www.ncbi.nlm.nih.gov/gene/?term=RB9740 RB9742 RB9742 RB9742 5251548 5252279 - hypothetical protein gene gene5430 http://www.ncbi.nlm.nih.gov/gene/?term=RB9742 RB9744 RB9744 RB9744 5252292 5252417 - hypothetical protein gene gene5431 http://www.ncbi.nlm.nih.gov/gene/?term=RB9744 RB9745 RB9745 pknB pknB 5252442 5254412 + serine/threonine protein kinase best DB hits: BLAST: ddbj:BAB06223.1%3B (AP001515) serinethreonine protein kinase%3B E%3D1e-33 swissprot:P71584%3B PKNB_MYCTU SERINETHREONINE-PROTEIN%3B E%3D1e-32 pir:H69878%3B probable protein kinase (EC 2.7.1.-) yloP - Bacillus%3B E%3D1e-32 COG: BH2504_1%3B COG0515 Serine/threonine protein kinases%3B E%3D1e-34 PFAM: PF00069%3B Protein kinase domain%3B E%3D2.6e-53 gene gene5432 http://www.ncbi.nlm.nih.gov/gene/?term=RB9745 RB9747 RB9747 RB9747 5254530 5254748 + hypothetical protein gene gene5433 http://www.ncbi.nlm.nih.gov/gene/?term=RB9747 RB9748 RB9748 RB9748 5254745 5255845 + dihydroorotate dehydrogenase 2 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway%3B uses a flavin nucleotide as an essential cofactor%3B class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus%2C which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors gene gene5434 http://www.ncbi.nlm.nih.gov/gene/?term=RB9748 RB9751 RB9751 RB9751 5255923 5256858 + signal peptide gene gene5435 http://www.ncbi.nlm.nih.gov/gene/?term=RB9751 RB9752 RB9752 RB9752 5256855 5257259 - hypothetical protein gene gene5436 http://www.ncbi.nlm.nih.gov/gene/?term=RB9752 RB9755 RB9755 arsA arsA 5257623 5259401 - arylsulfatase PMID: 7910580 PMID: 1572648 best DB hits: BLAST: pdb:1E2S%3B P Chain P%2C Crystal Structure Of An Arylsulfatase A%3B E%3D5e-34 pdb:1AUK%3B Human Arylsulfatase A%3B E%3D6e-34 embl:CAA36398.1%3B (X52150) arylsulphatase a [Homo sapiens]%3B E%3D7e-34 COG: PA0183%3B COG3119 Arylsulfatase A and related enzymes%3B E%3D9e-32 TM1703%3B COG1368 Phosphoglycerol transferase and related proteins%2C%3B E%3D0.008 PFAM: PF00884%3B Sulfatase%3B E%3D4.8e-55 gene gene5437 http://www.ncbi.nlm.nih.gov/gene/?term=RB9755 RB9757 RB9757 RB9757 5259412 5259519 - hypothetical protein gene gene5438 http://www.ncbi.nlm.nih.gov/gene/?term=RB9757 RB9758 RB9758 RB9758 5259536 5259928 - hypothetical protein gene gene5439 http://www.ncbi.nlm.nih.gov/gene/?term=RB9758 RB9761 RB9761 RB9761 5260004 5260363 + signal peptide gene gene5440 http://www.ncbi.nlm.nih.gov/gene/?term=RB9761 RB9765 RB9765 RB9765 5260845 5263346 - subtilisin proteinase-like protein PMID: 11544236 best DB hits: BLAST: gb:AAK02042.1%3B AF261825_11 (AF261825) hypothetical protein%3B E%3D2e-97 PFAM: PF02662%3B Methyl-viologen-reducing hydrogenase%3B E%3D0.091 gene gene5441 http://www.ncbi.nlm.nih.gov/gene/?term=RB9765 RB9766 RB9766 RB9766 5263361 5264383 - ATPase PMID: 11544236 best DB hits: BLAST: gb:AAK02043.1%3B AF261825_12 (AF261825) ATPase [Salmonella%3B E%3D3e-67 swissprot:P55530%3B Y4KL_RHISN HYPOTHETICAL 37.6 KD AAA-FAMILY%3B E%3D2e-41 gb:AAA64864.1%3B (U23723) orf300 [Escherichia coli]%3B E%3D9e-32 COG: HP1069%3B COG0465 ATP-dependent Zn proteases%3B E%3D4e-24 AF0477%3B COG0464 ATPases of the AAA+ class%3B E%3D3e-23 Cj1116c%3B COG0465 ATP-dependent Zn proteases%3B E%3D5e-22 PFAM: PF00406%3B Adenylate kinase%3B E%3D0.57 PF00071%3B Ras family%3B E%3D0.09 PF01202%3B Shikimate kinase%3B E%3D0.028 gene gene5442 http://www.ncbi.nlm.nih.gov/gene/?term=RB9766 RB9767 RB9767 RB9767 5264348 5264641 + hypothetical protein gene gene5443 http://www.ncbi.nlm.nih.gov/gene/?term=RB9767 RB9768 RB9768 RB9768 5264812 5264970 - hypothetical protein gene gene5444 http://www.ncbi.nlm.nih.gov/gene/?term=RB9768 RB9769 RB9769 RB9769 5264970 5265335 - phosphotyrosine protein phosphatase best DB hits: BLAST: pir:F83457%3B hypothetical protein PA1506 [imported] - Pseudomonas%3B E%3D9e-13 COG: PA1506%3B COG0394 Protein-tyrosine-phosphatase%3B E%3D9e-14 PFAM: PF01451%3B Low molecular weight phosphotyrosine%3B E%3D0.00019 gene gene5445 http://www.ncbi.nlm.nih.gov/gene/?term=RB9769 RB977 RB977 nagA nagA 512471 516040 + N-acetylglucosamine-6-phosphate deacetylase PMID: 9301118 best DB hits: BLAST: pir:G72219%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D1e-40 ddbj:BAB06727.1%3B (AP001517) BH3008~~unknown conserved protein%3B E%3D2e-36 pir:H71130%3B hypothetical protein PH0813 - Pyrococcus horikoshii%3B E%3D3e-26 COG: TM1723%3B COG1228 Imidazolonepropionase and related amidohydrolases%3B E%3D1e-41 BH0421%3B COG1820 N-acetylglucosamine-6-phosphate deacetylase%3B E%3D1e-04 VC1205%3B COG1228 Imidazolonepropionase and related amidohydrolases%3B E%3D3e-04 PFAM: PF02612%3B N-acetylglucosamine-6-phosphat%3B E%3D0.073 PF01979%3B Adenine deaminase%3B E%3D0.0022 PF00744%3B Dihydroorotase-like%3B E%3D0.48 gene gene531 http://www.ncbi.nlm.nih.gov/gene/?term=RB977 RB9771 RB9771 RB9771 5265332 5265928 - exonuclease best DB hits: BLAST: embl:CAB76298.1%3B (AL158057) hypothetical protein SC10G8.25c.%3B E%3D8e-33 pir:A82207%3B conserved hypothetical protein VC1377 [imported] -%3B E%3D2e-12 pir:E83447%3B hypothetical protein PA1575 [imported] - Pseudomonas%3B E%3D5e-10 PFAM: PF00929%3B Exonuclease%3B E%3D1.8e-09 gene gene5446 http://www.ncbi.nlm.nih.gov/gene/?term=RB9771 RB9772 RB9772 RB9772 5265889 5266926 + hypothetical protein PMID: 11759840 gene gene5447 http://www.ncbi.nlm.nih.gov/gene/?term=RB9772 RB9774 RB9774 RB9774 5267010 5267189 - hypothetical protein gene gene5448 http://www.ncbi.nlm.nih.gov/gene/?term=RB9774 RB9779 RB9779 RB9779 5267553 5268920 + hypothetical protein gene gene5450 http://www.ncbi.nlm.nih.gov/gene/?term=RB9779 RB9782 RB9782 RB9782 5268914 5269594 - signal peptide gene gene5451 http://www.ncbi.nlm.nih.gov/gene/?term=RB9782 RB9784 RB9784 RB9784 5269555 5270166 - hypothetical protein gene gene5452 http://www.ncbi.nlm.nih.gov/gene/?term=RB9784 RB9786 RB9786 RB9786 5270205 5270645 - hypothetical protein gene gene5453 http://www.ncbi.nlm.nih.gov/gene/?term=RB9786 RB9787 RB9787 RB9787 5270719 5270904 - hypothetical protein gene gene5454 http://www.ncbi.nlm.nih.gov/gene/?term=RB9787 RB9788 RB9788 RB9788 5270809 5271042 + hypothetical protein gene gene5455 http://www.ncbi.nlm.nih.gov/gene/?term=RB9788 RB9790 RB9790 RB9790 5271138 5271476 - protein kinase C inhibitor PMID: 2307677 best DB hits: BLAST: swissprot:P32084%3B YHIT_SYNP7 HYPOTHETICAL 12.4 KD HIT-LIKE PROTEIN%3B E%3D5e-34 pir:A35350%3B protein kinase C inhibitor - bovine%3B E%3D8e-34 gb:AAA18398.1%3B (U09407) protein kinase C inhibitor%3B E%3D8e-34 COG: slr1234%3B COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and%3B E%3D6e-33 ycfF%3B COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other%3B E%3D9e-26 XF1810%3B COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and%3B E%3D1e-21 PFAM: PF01230%3B HIT family%3B E%3D6e-59 gene gene5456 http://www.ncbi.nlm.nih.gov/gene/?term=RB9790 RB9791 RB9791 radC radC 5271583 5272542 + DNA repair protein PMID: 1741263 best DB hits: BLAST: ddbj:BAB06751.1%3B (AP001517) DNA repair protein [Bacillus%3B E%3D6e-32 swissprot:Q02170%3B RADC_BACSU DNA REPAIR PROTEIN RADC HOMOLOG%3B E%3D9e-32 swissprot:Q9X1P3%3B RADC_THEMA DNA REPAIR PROTEIN RADC HOMOLOG%3B E%3D1e-30 COG: BH3032%3B COG2003 DNA repair proteins%3B E%3D5e-33 gene gene5457 http://www.ncbi.nlm.nih.gov/gene/?term=RB9791 RB9792 RB9792 RB9792 5272603 5272740 + hypothetical protein gene gene5458 http://www.ncbi.nlm.nih.gov/gene/?term=RB9792 RB9793 RB9793 RB9793 5272850 5273041 - hypothetical protein gene gene5459 http://www.ncbi.nlm.nih.gov/gene/?term=RB9793 RB9794 RB9794 glnB glnB 5273274 5273591 - nitrogen regulatory protein P-II PMID: 7590157 PMID: 9733647 best DB hits: BLAST: swissprot:Q10960%3B GLNB_MYCTU NITROGEN REGULATORY PROTEIN P-II%3B E%3D5e-16 swissprot:O30794%3B GLNB_NOSPU NITROGEN REGULATORY PROTEIN P-II (PII%3B E%3D4e-15 swissprot:P80016%3B GLNB_SYNP7 NITROGEN REGULATORY PROTEIN P-II (PII%3B E%3D5e-15 COG: Rv2919c%3B COG0347 Nitrogen regulatory protein PII%3B E%3D5e-17 PFAM: PF00543%3B Nitrogen regulatory protein P-II%3B E%3D1.2e-10 gene gene5460 http://www.ncbi.nlm.nih.gov/gene/?term=RB9794 RB9795 RB9795 asd asd 5273623 5274642 - aspartate-semialdehyde dehydrogenase best DB hits: BLAST: swissprot:O67716%3B DHAS_AQUAE ASPARTATE-SEMIALDEHYDE DEHYDROGENASE%3B E%3D1e-78 swissprot:Q04797%3B DHAS_BACSU ASPARTATE-SEMIALDEHYDE DEHYDROGENASE%3B E%3D4e-78 pir:D46665%3B aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) -%3B E%3D9e-78 COG: aq_1866%3B COG0136 Aspartate-semialdehyde dehydrogenase%3B E%3D1e-79 PFAM: PF01118%3B Semialdehyde dehydrogenase%2C N%3B E%3D9.5e-36 PF02774%3B Semialdehyde dehydrogenase%2C d%3B E%3D5.2e-65 gene gene5461 http://www.ncbi.nlm.nih.gov/gene/?term=RB9795 RB9797 RB9797 RB9797 5274691 5275002 - hypothetical protein gene gene5462 http://www.ncbi.nlm.nih.gov/gene/?term=RB9797 RB9798 RB9798 RB9798 5275172 5276314 - hypothetical protein gene gene5463 http://www.ncbi.nlm.nih.gov/gene/?term=RB9798 RB98 RB98 RB98 40275 40571 - 50S ribosomal protein L37 PMID: 9679194 PMID: 2546769 best DB hits: BLAST: pir:E75218%3B lsu ribosomal protein l37ae (rpl37ae) PAB7067 -%3B E%3D0.14 swissprot:O74106%3B R37A_PYRHO 50S RIBOSOMAL PROTEIN L37AE -----%3B E%3D0.30 gene gene55 http://www.ncbi.nlm.nih.gov/gene/?term=RB98 RB9800 RB9800 RB9800 5276364 5276618 - hypothetical protein gene gene5464 http://www.ncbi.nlm.nih.gov/gene/?term=RB9800 RB9801 RB9801 RB9801 5276520 5276741 + hypothetical protein gene gene5465 http://www.ncbi.nlm.nih.gov/gene/?term=RB9801 RB9805 RB9805 RB9805 5276839 5280519 + circumsporozoite protein- membrane associated protein PMID: 8426613 best DB hits: BLAST: gb:AAA70381.1%3B (L05069) circumsporozoite protein [Plasmodium%3B E%3D0.15 pir:A41156%3B circumsporozoite protein - Plasmodium vivax (isolate%3B E%3D0.35 embl:CAB58111.1%3B (AL121806) prediction%3D(method:''genefinder''%2C%3B E%3D0.48 gene gene5466 http://www.ncbi.nlm.nih.gov/gene/?term=RB9805 RB9806 RB9806 RB9806 5280590 5281087 + signal peptide gene gene5467 http://www.ncbi.nlm.nih.gov/gene/?term=RB9806 RB9808 RB9808 comM comM 5281208 5282749 + comM protein PMID: 9457884 best DB hits: BLAST: pir:S75721%3B hypothetical protein slr0904 - Synechocystis sp. (strain%3B E%3D1e-117 pir:G72368%3B comM protein - Thermotoga maritima (strain MSB8) -----%3B E%3D1e-113 pir:C75370%3B Mg(2+) chelatase - Deinococcus%3B E%3D1e-111 COG: slr0904%3B COG0606 Predicted ATPases%3B E%3D1e-118 BH3051%3B COG1067 Predicted ATP-dependent protease%3B ATPase domain%3B E%3D7e-06 MTH556%3B COG1239 Mg-chelatase subunit ChlI%3B E%3D5e-04 PFAM: PF01078%3B Magnesium chelatase%2C subunit%3B E%3D1.2e-10 PF01202%3B Shikimate kinase%3B E%3D0.29 PF01695%3B IstB-like ATP binding protein%3B E%3D0.57 gene gene5468 http://www.ncbi.nlm.nih.gov/gene/?term=RB9808 RB9809 RB9809 RB9809 5282685 5283128 - hypothetical protein gene gene5469 http://www.ncbi.nlm.nih.gov/gene/?term=RB9809 RB981 RB981 RB981 516037 517344 + imidazolonepropionase PMID: 10192928 best DB hits: BLAST: ddbj:BAB06727.1%3B (AP001517) BH3008~~unknown conserved protein%3B E%3D1e-19 pir:G72219%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D3e-16 pir:G71130%3B hypothetical protein PH0812 - Pyrococcus horikoshii%3B E%3D2e-12 COG: BH3008%3B COG1228 Imidazolonepropionase and related amidohydrolases%3B E%3D1e-20 PFAM: PF01311%3B Bacterial export proteins%2C famil%3B E%3D0.13 PF02612%3B N-acetylglucosamine-6-phosphate%3B E%3D0.17 gene gene532 http://www.ncbi.nlm.nih.gov/gene/?term=RB981 RB9810 RB9810 RB9810 5283122 5284438 + transposase best DB hits: BLAST: gb:AAD38020.1%3B AF148127_1 (AF148127) transposase [Porphyromonas%3B E%3D2e-13 ddbj:BAA83477.1%3B (AB009361) transposase [Porphyromonas%3B E%3D3e-13 ddbj:BAA92234.1%3B (AB031551) transposase [Bacillus subtilis]%3B E%3D4e-10 COG: BH0691%3B COG3385 Predicted transposase%3B E%3D4e-10 PFAM: PF01609%3B Transposase (IS4 family)%3B E%3D6.2e-08 gene gene5470 http://www.ncbi.nlm.nih.gov/gene/?term=RB9810 RB9811 RB9811 RB9811 5284365 5284673 + hypothetical protein gene gene5471 http://www.ncbi.nlm.nih.gov/gene/?term=RB9811 RB9813 RB9813 RB9813 5284638 5285123 - hypothetical protein best DB hits: BLAST: pir:T00198%3B vp80 protein - Leucania separata nuclear polyhedrosis%3B E%3D0.39 gene gene5472 http://www.ncbi.nlm.nih.gov/gene/?term=RB9813 RB9817 RB9817 RB9817 5285340 5288765 - hypothetical protein gene gene5473 http://www.ncbi.nlm.nih.gov/gene/?term=RB9817 RB9821 RB9821 RB9821 5288732 5289274 - hypothetical protein best DB hits: BLAST: pir:B82065%3B conserved hypothetical protein VC2524 [imported] -%3B E%3D9e-28 embl:CAC12689.1%3B (AJ272115) hypothetical protein [Thauera%3B E%3D6e-26 pir:B83087%3B conserved hypothetical protein PA4458 [imported] -%3B E%3D7e-26 COG: VC2524%3B COG1778 Uncharacterized proteins of HAD superfamily%2C%3B E%3D8e-29 APE0766%3B COG0561 Predicted hydrolases of the HAD superfamily%3B E%3D6e-05 gene gene5474 http://www.ncbi.nlm.nih.gov/gene/?term=RB9821 RB9823 RB9823 RB9823 5289276 5290535 - hypothetical protein best DB hits: BLAST: swissprot:O67500%3B YF46_AQUAE HYPOTHETICAL PROTEIN AQ_1546 -----%3B E%3D3e-47 swissprot:P45313%3B YRBH_HAEIN HYPOTHETICAL PROTEIN HI1678 -----%3B E%3D2e-46 gb:AAK02609.1%3B (AE006087) KpsF [Pasteurella multocida]%3B E%3D3e-43 COG: aq_1546_1%3B COG0794 Predicted sugar phosphate isomerase involved in%3B E%3D7e-37 APE1838%3B COG0517 CBS domains%3B E%3D2e-08 PFAM: PF01380%3B SIS domain%3B E%3D1.1e-28 PF00571%3B CBS domain%3B E%3D0.059 gene gene5475 http://www.ncbi.nlm.nih.gov/gene/?term=RB9823 RB9826 RB9826 RB9826 5290549 5291328 - hypothetical protein best DB hits: BLAST: pir:G83105%3B hypothetical protein PA4318 [imported] - Pseudomonas%3B E%3D2e-12 ddbj:BAB04453.1%3B (AP001509) BH0734~~unknown conserved protein%3B E%3D3e-04 pir:S74573%3B hypothetical protein slr0254 - Synechocystis sp. (strain%3B E%3D4e-04 COG: PA4318%3B COG1714 Uncharacterized membrane protein/domain%3B E%3D2e-13 gene gene5476 http://www.ncbi.nlm.nih.gov/gene/?term=RB9826 RB9828 RB9828 RB9828 5291466 5293130 + transmembrane Mn(2+) transporter best DB hits: BLAST: gb:AAK02765.1%3B (AE006104) unknown [Pasteurella multocida]%3B E%3D0.006 gb:AAD41078.1%3B AF141204_1 (AF141204) Nramp2 [Arabidopsis thaliana]%3B E%3D0.014 gb:AAG52643.1%3B AC079677_7 (AC079677) stress response protein%3B E%3D0.014 COG: NMB1426%3B COG1914 Mn2+ and Fe2+ transporters of the NRAMP family%3B E%3D0.002 BS_ycsG%3B COG0591 Na+/proline%2C Na+/panthothenate symporters and%3B E%3D0.008 gene gene5477 http://www.ncbi.nlm.nih.gov/gene/?term=RB9828 RB983 RB983 RB983 517529 518806 + serine/threonine protein kinase PMID: 8063104 best DB hits: BLAST: swissprot:P54741%3B AFSK_STRCO SERINETHREONINE PROTEIN KINASE AFSK%3B E%3D0.001 embl:CAB88430.1%3B (AL353815) serinethreonine protein kinase%3B E%3D0.001 pir:H69064%3B serinethreonine protein kinase related protein -%3B E%3D0.001 COG: MTH1485%3B COG1520 Uncharacterized proteins of WD40-like repeat family%3B E%3D1e-04 PFAM: PF01011%3B PQQ enzyme repeat%3B E%3D0.77 gene gene533 http://www.ncbi.nlm.nih.gov/gene/?term=RB983 RB9830 RB9830 RB9830 5293111 5293341 - hypothetical protein gene gene5478 http://www.ncbi.nlm.nih.gov/gene/?term=RB9830 RB9832 RB9832 RB9832 5293371 5294813 - phosphomannomutase (pmm) best DB hits: BLAST: pir:E71082%3B probable phospho-sugar mutase 2 - Pyrococcus horikoshii%3B E%3D1e-60 pir:H75104%3B phosphomannomutase (pmm) PAB0819 - Pyrococcus abyssi%3B E%3D7e-58 gb:AAB90779.1%3B (AE001073) phosphomannomutase (pmm) [Archaeoglobus%3B E%3D5e-53 COG: PH0923%3B COG1109 Phosphomannomutase%3B E%3D1e-61 PFAM: PF02878%3B Phosphoglucomutase/phosphomannomu%3B E%3D4.1e-29 PF02879%3B Phosphoglucomutase/phosphomannomu%3B E%3D1.2e-15 PF02880%3B Phosphoglucomutase/phosphomannomu%3B E%3D0.00028 gene gene5479 http://www.ncbi.nlm.nih.gov/gene/?term=RB9832 RB9834 RB9834 fwdA fwdA 5294812 5296632 + formylmethanofuran dehydrogenase subunit A PMID: 9651254 PMID: 10215859 PMID: 10848995 PMID: 11073907 best DB hits: BLAST: gb:AAG32950.1%3B (AF032114) formylmethanofuran%3B E%3D6e-98 pir:S57456%3B formylmethanofuran dehydrogenase (EC 1.2.99.5)%3B E%3D8e-72 pir:G69074%3B formylmethanofuran dehydrogenase (EC 1.2.99.5)%3B E%3D3e-71 COG: MTH1557%3B COG1229 Formylmethanofuran dehydrogenase subunit A%3B E%3D3e-72 PFAM: PF02612%3B N-acetylglucosamine-6-phosphat%3B E%3D0.0077 gene gene5480 http://www.ncbi.nlm.nih.gov/gene/?term=RB9834 RB9835 RB9835 ffsA ffsA 5296625 5297629 + formylmethanofuran--tetrahydromethanopterin formyltransferase catalyzes the transfer of a formyl group from formylmethanofuran to tetrahydromethanopterin tetrahydromethanopterin gene gene5481 http://www.ncbi.nlm.nih.gov/gene/?term=RB9835 RB9836 RB9836 fwdC fwdC 5297626 5298417 + tungsten formylmethanofuran dehydrogenase%2C subunit C (fwdC) PMID: 8575452 best DB hits: BLAST: gb:AAB89324.1%3B (AE000970) tungsten formylmethanofuran%3B E%3D2e-17 pir:T45154%3B probable formylmethanofuran dehydrogenase (EC 1.2.99.5)%3B E%3D3e-17 swissprot:Q59579%3B FWDC_METTM TUNGSTEN-CONTAINING%3B E%3D2e-14 COG: AF1931%3B COG2218 Formylmethanofuran dehydrogenase subunit C%3B E%3D2e-18 TM0394%3B COG0070 Glutamate synthetase domain 3%3B E%3D2e-06 MJ0658%3B COG2218 Formylmethanofuran dehydrogenase subunit C%3B E%3D0.001 PFAM: PF01493%3B Domain of unknown function DUF14%3B E%3D1.3e-06 gene gene5482 http://www.ncbi.nlm.nih.gov/gene/?term=RB9836 RB9838 RB9838 RB9838 5298462 5298938 - hypothetical protein gene gene5483 http://www.ncbi.nlm.nih.gov/gene/?term=RB9838 RB9839 RB9839 RB9839 5299011 5299172 - hypothetical protein gene gene5484 http://www.ncbi.nlm.nih.gov/gene/?term=RB9839 RB9840 RB9840 comE comE 5299200 5301809 + competence protein ComEC PMID: 7968523 best DB hits: BLAST: pir:B75346%3B probable competence protein ComECRec2 - Deinococcus%3B E%3D2e-19 ddbj:BAA12454.1%3B (D84432) ComEC [Bacillus subtilis] -----%3B E%3D3e-19 swissprot:P39695%3B CME3_BACSU COME OPERON PROTEIN 3 ----- pir:%3B E%3D1e-18 COG: DR1854_2%3B COG2333 Predicted hydrolases of metallo-beta-lactamase%3B E%3D3e-16 BH1335_1%3B COG0658 Predicted multitransmembrane%2C metal-binding%3B E%3D5e-13 PA2984_2%3B COG2333 Predicted hydrolases of metallo-beta-lactamase%3B E%3D5e-09 PFAM: PF00753%3B Metallo-beta-lactamase superfamil%3B E%3D1.5e-07 gene gene5485 http://www.ncbi.nlm.nih.gov/gene/?term=RB9840 RB9844 RB9844 RB9844 5301844 5302797 + hypothetical protein gene gene5486 http://www.ncbi.nlm.nih.gov/gene/?term=RB9844 RB9848 RB9848 hemA hemA 5302794 5304074 + glutamyl-tRNA reductase PMID: 2110138 best DB hits: BLAST: swissprot:P16618%3B HEM1_BACSU GLUTAMYL-TRNA REDUCTASE (GLUTR)%3B E%3D4e-56 swissprot:P42807%3B HEM1_PSEAE GLUTAMYL-TRNA REDUCTASE (GLUTR)%3B E%3D1e-54 ddbj:BAB06767.1%3B (AP001517) glutamyl-tRNA reductase [Bacillus%3B E%3D8e-53 COG: BS_hemA%3B COG0373 Glutamyl-tRNA reductase%3B E%3D4e-57 PFAM: PF01089%3B Delta 1-pyrroline-5-carboxyla%3B E%3D0.55 PF01408%3B Oxidoreductase%2C NAD-bi%3B E%3D4.2e-05 PF01488%3B Shikimate / quinate 5-dehydro%3B E%3D7.6e-05 gene gene5487 http://www.ncbi.nlm.nih.gov/gene/?term=RB9848 RB9849 RB9849 RB9849 5304088 5304933 + hypothetical protein best DB hits: BLAST: pir:T34929%3B hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces%3B E%3D3e-04 gene gene5488 http://www.ncbi.nlm.nih.gov/gene/?term=RB9849 RB9852 RB9852 cnrH cnrH 5304982 5305653 + RNA polymerase sigma factor cnrH PMID: 8052622 best DB hits: BLAST: swissprot:P37978%3B CNRH_ALCEU RNA POLYMERASE SIGMA FACTOR CNRH%3B E%3D5e-04 pir:G83282%3B probable sigma-70 factor%2C ECF subfamily PA2896%3B E%3D0.008 pir:S74832%3B transcription initiation factor sigma E sll0856 -%3B E%3D0.055 COG: PA2896%3B COG1595 DNA-directed RNA polymerase specialized sigma%3B E%3D8e-04 PFAM: PF00776%3B Sigma-70 factor (ECF subfamily)%3B E%3D0.028 PF00140%3B Sigma-70 factor%3B E%3D0.028 gene gene5489 http://www.ncbi.nlm.nih.gov/gene/?term=RB9852 RB9854 RB9854 pknB pknB 5305661 5307355 + serine/threonine protein kinase best DB hits: BLAST: pir:T36717%3B probable serinethreonine protein kinase - Streptomyces%3B E%3D4e-44 swissprot:P54744%3B PKNB_MYCLE SERINETHREONINE-PROTEIN%3B E%3D5e-44 swissprot:P71584%3B PKNB_MYCTU SERINETHREONINE-PROTEIN%3B E%3D3e-43 COG: Rv0014c_1%3B COG0515 Serine/threonine protein kinases%3B E%3D3e-44 PFAM: PF00069%3B Protein kinase domain%3B E%3D2.2e-48 gene gene5490 http://www.ncbi.nlm.nih.gov/gene/?term=RB9854 RB9855 RB9855 RB9855 5307599 5308990 - transmembrane protein best DB hits: BLAST: pir:E71127%3B hypothetical protein PH0786 - Pyrococcus horikoshii%3B E%3D0.013 pir:T32472%3B hypothetical protein F08F1.7 - Caenorhabditis elegans%3B E%3D0.87 PFAM: PF02366%3B Dolichyl-phosphate-mannose-prote%3B E%3D0.00021 gene gene5491 http://www.ncbi.nlm.nih.gov/gene/?term=RB9855 RB9857 RB9857 metH metH 5308914 5312654 - B12-dependent methionine synthase one of two methionine synthases in Escherichia coli%3B MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine%3B requires zinc for activity gene gene5492 http://www.ncbi.nlm.nih.gov/gene/?term=RB9857 RB9858 RB9858 RB9858 5312605 5312790 + hypothetical protein gene gene5493 http://www.ncbi.nlm.nih.gov/gene/?term=RB9858 RB9859 RB9859 RB9859 5312651 5312860 - hypothetical protein gene gene5494 http://www.ncbi.nlm.nih.gov/gene/?term=RB9859 RB9860 RB9860 RB9860 5312803 5313810 + hypothetical protein best DB hits: BLAST: embl:CAC01649.1%3B (AL391072) conserved hypothetical protein%3B E%3D2e-34 embl:CAB55712.1%3B (AL117387) hypothetical protein SCF41.09%3B E%3D2e-29 swissprot:P55567%3B Y4MH_RHISN HYPOTHETICAL 33.9 KD PROTEIN Y4MH%3B E%3D2e-15 gene gene5495 http://www.ncbi.nlm.nih.gov/gene/?term=RB9860 RB9861 RB9861 RB9861 5313829 5314125 + hypothetical protein gene gene5496 http://www.ncbi.nlm.nih.gov/gene/?term=RB9861 RB9863 RB9863 RB9863 5314129 5314242 + hypothetical protein gene gene5497 http://www.ncbi.nlm.nih.gov/gene/?term=RB9863 RB9867 RB9867 RB9867 5314345 5314974 - hypothetical protein gene gene5498 http://www.ncbi.nlm.nih.gov/gene/?term=RB9867 RB9869 RB9869 ilvC ilvC 5314979 5315983 - ketol-acid reductoisomerase catalyzes the formation of (R)-2%2C3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis gene gene5499 http://www.ncbi.nlm.nih.gov/gene/?term=RB9869 RB9871 RB9871 ilvN ilvN 5316045 5316629 - acetolactate synthase small subunit PMID: 6308579 PMID: 1851954 best DB hits: BLAST: swissprot:O27492%3B ILVH_METTH PROBABLE ACETOLACTATE SYNTHASE SMALL%3B E%3D1e-27 pir:S74358%3B acetolactate synthase ilvN - Synechocystis sp. (strain%3B E%3D5e-27 gb:AAB89532.1%3B (AE000985) acetolactate synthase%2C small subunit%3B E%3D9e-27 COG: MTH1443%3B COG0440 Acetolactate synthase%2C small subunit%3B E%3D9e-29 PFAM: PF01842%3B ACT domain%3B E%3D1.1e-18 gene gene5500 http://www.ncbi.nlm.nih.gov/gene/?term=RB9871 RB9872 RB9872 RB9872 5316692 5316895 + hypothetical protein gene gene5501 http://www.ncbi.nlm.nih.gov/gene/?term=RB9872 RB9874 RB9874 ypuG ypuG 5316908 5317711 + hypothetical protein best DB hits: BLAST: swissprot:P35154%3B YPUG_BACSU HYPOTHETICAL 29.6 KD PROTEIN IN%3B E%3D4e-18 ddbj:BAB05279.1%3B (AP001512) BH1560~~unknown conserved protein%3B E%3D3e-14 pir:D81075%3B conserved hypothetical protein NMB1504 [imported] -%3B E%3D3e-13 COG: BS_ypuG%3B COG1354 Uncharacterized ACR%3B E%3D4e-19 PFAM: PF02616%3B Uncharacterized ACR%2C COG1354%3B E%3D1.1e-14 gene gene5502 http://www.ncbi.nlm.nih.gov/gene/?term=RB9874 RB9875 RB9875 RB9875 5317708 5318550 + hypothetical protein best DB hits: BLAST: gb:AAG52354.1%3B AC011765_6 (AC011765) unknown protein%3B E%3D2e-36 gb:AAD55271.1%3B AC008263_2 (AC008263) ESTs gb AA067482 and gb%3B E%3D4e-34 gb:AAD25827.1%3B AC006951_6 (AC006951) hypothetical protein%3B E%3D1e-29 COG: TM0864%3B COG1234 Metal-dependent hydrolases of the beta-lactamase%3B E%3D8e-06 PFAM: PF02112%3B cAMP phosphodiesterases class-%3B E%3D0.25 PF00753%3B Metallo-beta-lactamase superfa%3B E%3D0.036 gene gene5503 http://www.ncbi.nlm.nih.gov/gene/?term=RB9875 RB9876 RB9876 hemN hemN 5318552 5319721 + coproporphyrinogen III oxidase PMID: 8757728 best DB hits: BLAST: ddbj:BAB05062.1%3B (AP001511) coproporphyrinogen III oxidase%3B E%3D7e-49 pir:B69640%3B coproporphyrinogen oxidase (EC 1.3.3.3) III%2C%3B E%3D4e-47 swissprot:P54304%3B HEMN_BACSU PROBABLE OXYGEN-INDEPENDENT%3B E%3D5e-47 COG: BH1343%3B COG0635 Coproporphyrinogen III oxidase and related FeS%3B E%3D7e-50 PFAM: PF02473%3B Oxygen-independent Coproporphy%3B E%3D2.7e-17 gene gene5504 http://www.ncbi.nlm.nih.gov/gene/?term=RB9876 RB9877 RB9877 RB9877 5319678 5319887 + hypothetical protein gene gene5505 http://www.ncbi.nlm.nih.gov/gene/?term=RB9877 RB9878 RB9878 RB9878 5319838 5320185 + hypothetical protein gene gene5506 http://www.ncbi.nlm.nih.gov/gene/?term=RB9878 RB9879 RB9879 RB9879 5320131 5320868 - transcriptional regulator best DB hits: BLAST: pir:C83489%3B probable transcriptional regulator PA1261 [imported] -%3B E%3D6e-26 pir:H83309%3B probable transcriptional regulator PA2696 [imported] -%3B E%3D8e-14 ddbj:BAB04708.1%3B (AP001510) transcriptional regulator (AraCXylS%3B E%3D1e-11 COG: PA1261%3B COG2207 AraC-type DNA-binding domain-containing proteins%3B E%3D5e-27 PFAM: PF00989%3B PAS domain%3B E%3D0.18 PF00165%3B Bacterial regulatory helix-turn-heli%3B E%3D7.6e-24 gene gene5507 http://www.ncbi.nlm.nih.gov/gene/?term=RB9879 RB988 RB988 RB988 518860 519990 - hypothetical protein gene gene534 http://www.ncbi.nlm.nih.gov/gene/?term=RB988 RB9882 RB9882 pam pam 5320852 5322111 + peptidylglycine monooxygenase PMID: 3153462 best DB hits: BLAST: gb:AAF58870.1%3B (AE003831) CG12130 gene product [Drosophila%3B E%3D0.033 ddbj:BAA06104.1%3B (D29625) precursor peptide [Equus caballus]%3B E%3D0.041 pir:T25723%3B hypothetical protein F21F3.1 - Caenorhabditis elegans%3B E%3D0.14 gene gene5508 http://www.ncbi.nlm.nih.gov/gene/?term=RB9882 RB9884 RB9884 RB9884 5322182 5325406 + endo-inulinase best DB hits: BLAST: gb:AAF24999.1%3B (AF141320) endo-inulinase [Pseudomonas mucidolens]%3B E%3D0.45 gene gene5509 http://www.ncbi.nlm.nih.gov/gene/?term=RB9884 RB9886 RB9886 RB9886 5325468 5327039 + sulfatase gene gene5510 http://www.ncbi.nlm.nih.gov/gene/?term=RB9886 RB9890 RB9890 yjlD yjlD 5327180 5328352 + NADH dehydrogenase best DB hits: BLAST: pir:S74947%3B hypothetical protein slr1591 - Synechocystis sp. (strain%3B E%3D1e-43 pir:F83079%3B NADH dehydrogenase PA4538 [imported] - Pseudomonas%3B E%3D9e-08 gb:AAK06224.1%3B AE006441_2 (AE006441) NADH oxidase [Lactococcus%3B E%3D1e-07 COG: slr1591%3B COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases%3B E%3D1e-44 PA4538%3B COG1252 NADH dehydrogenase%2C FAD-containing subunit%3B E%3D9e-09 Ta1129%3B COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases%3B E%3D6e-07 PFAM: PF02411%3B MerT mercuric transport prote%3B E%3D0.58 PF01266%3B D-amino acid oxidase%3B E%3D0.097 PF00070%3B Pyridine nucleotide-disulphid%3B E%3D4.6e-14 gene gene5511 http://www.ncbi.nlm.nih.gov/gene/?term=RB9890 RB9892 RB9892 cydA cydA 5328390 5329865 + cytochrome oxidase chain I PMID: 2843510 best DB hits: BLAST: pir:F72119%3B cytochrome oxidase chain I - Chlamydophila pneumoniae%3B E%3D3e-89 pir:A81721%3B cytochrome D ubiquinol oxidase%2C chain I TC0281%3B E%3D7e-86 pir:F71567%3B probable cytochrome oxidase chain I - Chlamydia%3B E%3D2e-85 COG: CPn0102%3B COG1271 Cytochrome bd-type quinol oxidase%2C subunit 1%3B E%3D3e-90 PFAM: PF01654%3B Bacterial Cytochrome Ubiquinol Ox%3B E%3D1.3e-170 gene gene5512 http://www.ncbi.nlm.nih.gov/gene/?term=RB9892 RB9894 RB9894 cydB cydB 5329862 5330890 + cytochrome d oxidase subunit PMID: 2843510 best DB hits: BLAST: gb:AAG01153.1%3B AF284438_4 (AF284438) cytochrome d oxidase subunit%3B E%3D3e-51 pir:H70417%3B cytochrome oxidase d subunit II - Aquifex aeolicus%3B E%3D1e-49 pir:G72119%3B cytochrome D ubiquinol oxidase%2C chain II CP0671%3B E%3D2e-47 COG: aq_1358%3B COG1294 Cytochrome bd-type quinol oxidase%2C subunit 2%3B E%3D9e-51 PFAM: PF02322%3B Cytochrome oxidase subunit II%3B E%3D4.7e-139 gene gene5513 http://www.ncbi.nlm.nih.gov/gene/?term=RB9894 RB9895 RB9895 RB9895 5330911 5333682 - signal peptide gene gene5514 http://www.ncbi.nlm.nih.gov/gene/?term=RB9895 RB9897 RB9897 RB9897 5333549 5333773 - hypothetical protein gene gene5515 http://www.ncbi.nlm.nih.gov/gene/?term=RB9897 RB9898 RB9898 RB9898 5333967 5334593 + intracellular proteinase I PMID: 8626329 best DB hits: BLAST: embl:CAC11607.1%3B (AL445064) probable intracellular proteinase I%3B E%3D2e-33 pir:F72722%3B hypothetical protein APE0319 - Aeropyrum pernix (strain%3B E%3D4e-27 gb:AAB89965.1%3B (AE001016) intracellular protease (pfpI)%3B E%3D3e-20 COG: Ta0465%3B COG0693 intracellular protease/amidase%3B E%3D2e-34 PFAM: PF01965%3B ThiJ/PfpI family%3B E%3D3.6e-26 gene gene5516 http://www.ncbi.nlm.nih.gov/gene/?term=RB9898 RB990 RB990 tetA tetA 520003 521505 + tetracycline-efflux transporter PMID: 1517220 best DB hits: BLAST: pir:H75515%3B tetracycline-efflux transporter - Deinococcus%3B E%3D3e-68 swissprot:P02982%3B TCR1_ECOLI TETRACYCLINE RESISTANCE PROTEIN%2C%3B E%3D4e-52 ddbj:BAA96336.1%3B (AB043474) RK2 tetracycline resistance protein%3B E%3D8e-52 COG: DR0472%3B COG0477 Permeases of the major facilitator superfamily%3B E%3D3e-69 BS_ywfA%3B COG2814 Arabinose efflux permease%3B E%3D9e-06 bcr%3B COG0477 Permeases of the major facilitator superfamily%3B E%3D1e-05 PFAM: PF01587%3B Monocarboxylate transporter%3B E%3D0.45 PF00083%3B Sugar (and other) transporter%3B E%3D0.36 gene gene535 http://www.ncbi.nlm.nih.gov/gene/?term=RB990 RB9900 RB9900 RB9900 5334744 5335766 - signal peptide gene gene5517 http://www.ncbi.nlm.nih.gov/gene/?term=RB9900 RB9902 RB9902 RB9902 5335763 5336299 - chaperonine gene gene5518 http://www.ncbi.nlm.nih.gov/gene/?term=RB9902 RB9903 RB9903 RB9903 5336312 5337100 - hypothetical protein gene gene5519 http://www.ncbi.nlm.nih.gov/gene/?term=RB9903 RB9904 RB9904 RB9904 5337111 5337344 - hypothetical protein gene gene5520 http://www.ncbi.nlm.nih.gov/gene/?term=RB9904 RB9905 RB9905 RB9905 5337287 5338162 + transposase best DB hits: BLAST: pir:S35005%3B probable transposase - Acetobacter xylinus insertion%3B E%3D5e-56 gb:AAD47597.1%3B AF144038_1 (AF144038) transposase%3B E%3D1e-55 pir:S77171%3B transposase sll1710 - Synechocystis sp. (strain PCC%3B E%3D4e-55 COG: sll1710%3B COG3293 Predicted transposase%3B E%3D3e-56 PFAM: PF01511%3B Transposase%3B E%3D9e-35 PF01675%3B Transposase%3B E%3D2.1e-31 gene gene5521 http://www.ncbi.nlm.nih.gov/gene/?term=RB9905 RB9907 RB9907 RB9907 5338185 5339486 + InsA (transposase) best DB hits: BLAST: gb:AAD45539.1%3B U70376_1 (U70376) InsA [Streptomyces netropsis]%3B E%3D5e-33 gb:AAG60893.1%3B AF322013_12 (AF322013) ID460 [Bradyrhizobium%3B E%3D8e-33 ddbj:BAA19966.1%3B (D63923) transposase [Acetobacter pasteurianus]%3B E%3D1e-26 gene gene5522 http://www.ncbi.nlm.nih.gov/gene/?term=RB9907 RB9908 RB9908 RB9908 5339497 5339649 + hypothetical protein gene gene5523 http://www.ncbi.nlm.nih.gov/gene/?term=RB9908 RB9909 RB9909 RB9909 5339539 5339913 - hypothetical protein gene gene5524 http://www.ncbi.nlm.nih.gov/gene/?term=RB9909 RB9911 RB9911 RB9911 5340153 5342036 - endo-1%2C4-beta-xylanase PMID: 3139632 PMID: 7664125 best DB hits: BLAST: gb:AAA90913.1%3B (U33060) endo-1%2C4-beta-xylanase [Thermotoga sp.]%3B E%3D2e-33 pir:B72423%3B endo-1%2C4-beta-xylanase B - Thermotoga maritima (strain%3B E%3D3e-33 swissprot:Q60041%3B XYNB_THENE ENDO-1%2C4-BETA-XYLANASE B PRECURSOR%3B E%3D2e-31 PFAM: PF00331%3B Glycosyl hydrolase 10%3B E%3D0.05 gene gene5525 http://www.ncbi.nlm.nih.gov/gene/?term=RB9911 RB9913 RB9913 RB9913 5341978 5342994 - signal peptide gene gene5526 http://www.ncbi.nlm.nih.gov/gene/?term=RB9913 RB9916 RB9916 rplI rplI 5343249 5343782 - ribosomal protein L9 PMID: 3528756 best DB hits: BLAST: pir:C82333%3B ribosomal protein L9 VC0369 [imported] - Vibrio cholerae%3B E%3D2e-23 pir:B82543%3B 50S ribosomal protein L9 XF2559 [imported] - Xylella%3B E%3D9e-20 swissprot:P02418%3B RL9_ECOLI 50S RIBOSOMAL PROTEIN L9 -----%3B E%3D4e-19 COG: VC0369%3B COG0359 Ribosomal protein L9%3B E%3D2e-24 PFAM: PF01281%3B Ribosomal protein L9%3B E%3D1.1e-39 gene gene5528 http://www.ncbi.nlm.nih.gov/gene/?term=RB9916 RB9917 RB9917 ssb ssb 5343861 5344370 - single-strand binding protein PMID: 6270666 PMID: 6384214 best DB hits: BLAST: swissprot:O83101%3B SSB_TREPA SINGLE-STRAND BINDING PROTEIN (SSB)%3B E%3D7e-23 embl:CAA76674.1%3B (Y17166) single strand DNA binding protein%3B E%3D1e-19 pir:B81310%3B single-strand DNA binding protein Cj1071 [imported] -%3B E%3D1e-19 COG: TP0062%3B COG0629 Single-stranded DNA-binding protein%3B E%3D7e-24 PFAM: PF00436%3B Single-strand binding protein family%3B E%3D1.7e-48 gene gene5529 http://www.ncbi.nlm.nih.gov/gene/?term=RB9917 RB9918 RB9918 RB9918 5344369 5344872 + hypothetical protein gene gene5530 http://www.ncbi.nlm.nih.gov/gene/?term=RB9918 RB9920 RB9920 rpsF rpsF 5344405 5344827 - ribosomal protein S6 PMID: 3528756 best DB hits: BLAST: embl:CAA76675.1%3B (Y17166) ribosomal protein S6 [Campylobacter%3B E%3D3e-06 swissprot:Q9ZAH3%3B RS6_CAMJE 30S RIBOSOMAL PROTEIN S6 -----%3B E%3D4e-06 swissprot:P56013%3B RS6_HELPY 30S RIBOSOMAL PROTEIN S6 -----%3B E%3D8e-06 COG: Cj1070%3B COG0360 Ribosomal protein S6%3B E%3D4e-07 PFAM: PF01250%3B Ribosomal protein S6%3B E%3D1.3e-13 gene gene5531 http://www.ncbi.nlm.nih.gov/gene/?term=RB9920 RB9922 RB9922 pth pth 5344869 5345441 - peptidyl-tRNA hydrolase Enables the recycling of peptidyl-tRNAs produced at termination of translation gene gene5532 http://www.ncbi.nlm.nih.gov/gene/?term=RB9922 RB9923 RB9923 rplY rplY 5345438 5346076 - 50S ribosomal protein L25 best DB hits: BLAST: swissprot:P14194%3B CTC_BACSU GENERAL STRESS PROTEIN CTC -----%3B E%3D4e-18 pir:S05373%3B ctc protein - Bacillus subtilis (fragment) -----%3B E%3D1e-17 ddbj:BAB03786.1%3B (AP001507) 50S ribosomal protein L25 [Bacillus%3B E%3D1e-16 COG: BS_ctc%3B COG1825 Ribosomal protein L25 (general stress protein Ctc)%3B E%3D4e-19 PFAM: PF01386%3B Ribosomal L25p family%3B E%3D6.1e-20 gene gene5533 http://www.ncbi.nlm.nih.gov/gene/?term=RB9923 RB9926 RB9926 RB9926 5346254 5347174 - pyruvate kinase-hypothetical secreted or membrane associated protein best DB hits: BLAST: ddbj:BAB10440.1%3B (AB009055) pyruvate kinase [Arabidopsis%3B E%3D0.25 gene gene5534 http://www.ncbi.nlm.nih.gov/gene/?term=RB9926 RB9927 RB9927 clpX clpX 5347256 5348656 - ATP-dependent protease ATP-binding subunit ClpX binds and unfolds substrates as part of the ClpXP protease gene gene5535 http://www.ncbi.nlm.nih.gov/gene/?term=RB9927 RB993 RB993 RB993 521502 522521 + 3-beta-hydroxysteroid dehydrogenase PMID: 8547173 best DB hits: BLAST: pir:E82632%3B NAD(P)H steroid dehydrogenase XF1825 [imported] -%3B E%3D7e-54 pir:H83099%3B probable oxidoreductase PA4361 [imported] - Pseudomonas%3B E%3D2e-39 gb:AAG11424.1%3B AC015449_6 (AC015449) Similar to steriod%3B E%3D3e-34 COG: XF1825%3B COG0451 Nucleoside-diphosphate-sugar epimerases%3B E%3D7e-55 BH1108%3B COG1087 UDP-glucose 4-epimerase%3B E%3D1e-08 Rv3464%3B COG1088 dTDP-D-glucose 4%2C6-dehydratase%3B E%3D1e-07 PFAM: PF01370%3B NAD dependent epimerase/dehydrat%3B E%3D0.087 PF00106%3B short chain dehydrogenase%3B E%3D0.038 PF00235%3B Profilin%3B E%3D0.88 gene gene536 http://www.ncbi.nlm.nih.gov/gene/?term=RB993 RB9930 RB9930 RB9930 5348975 5349331 - signal peptide best DB hits: PFAM: PF01537%3B Herpesvirus glycoprotein D%3B E%3D0.22 gene gene5536 http://www.ncbi.nlm.nih.gov/gene/?term=RB9930 RB9932 RB9932 RB9932 5349475 5350425 - hypothetical protein best DB hits: BLAST: pir:T34932%3B hypothetical protein SC3F9.10 SC3F9.10 - Streptomyces%3B E%3D5e-06 pir:T36189%3B probable isomerase - Streptomyces coelicolor -----%3B E%3D0.001 gene gene5537 http://www.ncbi.nlm.nih.gov/gene/?term=RB9932 RB9936 RB9936 RB9936 5350464 5350640 + hypothetical protein gene gene5538 http://www.ncbi.nlm.nih.gov/gene/?term=RB9936 RB9937 RB9937 RB9937 5350651 5352162 + transporter best DB hits: BLAST: pir:H82133%3B conserved hypothetical protein VC1966 [imported] -%3B E%3D1e-23 pir:F81867%3B probable integral membrane protein NMA1715 [imported] -%3B E%3D4e-22 pir:B81074%3B transporter%2C probable NMB1515 [imported] - Neisseria%3B E%3D1e-21 COG: VC1966_1%3B COG0477 Permeases of the major facilitator superfamily%3B E%3D1e-22 gene gene5539 http://www.ncbi.nlm.nih.gov/gene/?term=RB9937 RB994 RB994 RB994 522493 523314 - signal peptide gene gene537 http://www.ncbi.nlm.nih.gov/gene/?term=RB994 RB9941 RB9941 RB9941 5352096 5352302 - hypothetical protein gene gene5540 http://www.ncbi.nlm.nih.gov/gene/?term=RB9941 RB9942 RB9942 RB9942 5352324 5353916 - SAM-dependent methyltransferase best DB hits: BLAST: swissprot:O05979%3B Y789_RICPR HYPOTHETICAL PROTEIN RP789 -----%3B E%3D9e-51 embl:CAA72463.1%3B (Y11779) hypothetical protein [Rickettsia%3B E%3D6e-37 gb:AAK02458.1%3B (AE006073) unknown [Pasteurella multocida]%3B E%3D5e-35 COG: RP789_1%3B COG0500 SAM-dependent methyltransferases%3B E%3D8e-47 gene gene5541 http://www.ncbi.nlm.nih.gov/gene/?term=RB9942 RB9943 RB9943 cnt1 cnt1 5353964 5355271 + broadly selective sodium/nucleoside transporter hfCNT PMID: 8027026 best DB hits: BLAST: gb:AAD52151.1%3B AF132298_1 (AF132298) broadly selective%3B E%3D3e-54 gb:AAK03376.1%3B (AE006168) unknown [Pasteurella multocida]%3B E%3D6e-54 swissprot:Q62674%3B CNT1_RAT SODIUMNUCLEOSIDE COTRANSPORTER 1%3B E%3D2e-53 COG: BH1446%3B COG1972 Nucleoside permease%3B E%3D2e-53 PFAM: PF01773%3B Na+ dependent nucleoside tran%3B E%3D1.1e-142 gene gene5542 http://www.ncbi.nlm.nih.gov/gene/?term=RB9943 RB9945 RB9945 RB9945 5355360 5356313 + signal peptide gene gene5543 http://www.ncbi.nlm.nih.gov/gene/?term=RB9945 RB9948 RB9948 RB9948 5356736 5357236 - hypothetical protein gene gene5544 http://www.ncbi.nlm.nih.gov/gene/?term=RB9948 RB9950 RB9950 RB9950 5357353 5359563 - hypothetical protein best DB hits: BLAST: embl:CAB66476.1%3B (AL136541) hypothetical protein [Homo sapiens]%3B E%3D0.31 embl:CAA62913.1%3B (X91803) sodium-calcium exchanger%3B E%3D0.43 PFAM: PF00404%3B Dockerin type I repeat%3B E%3D0.19 gene gene5545 http://www.ncbi.nlm.nih.gov/gene/?term=RB9950 RB9952 RB9952 surE surE 5359676 5360476 - 5'/3'-nucleotidase SurE PMID: 7928962 best DB hits: BLAST: pir:F82311%3B survival protein SurE VC0531 [imported] - Vibrio%3B E%3D2e-37 gb:AAD51394.1%3B AF117715_3 (AF117715) survival protein homolog%3B E%3D8e-35 swissprot:O67004%3B SURE_AQUAE STATIONARY-PHASE SURVIVAL PROTEIN%3B E%3D5e-34 COG: VC0531%3B COG0496 Survival protein%2C predicted acid phosphatase%3B E%3D2e-38 PFAM: PF01975%3B Survival protein SurE%3B E%3D3.1e-64 gene gene5546 http://www.ncbi.nlm.nih.gov/gene/?term=RB9952 RB9953 RB9953 RB9953 5360489 5362111 - hypothetical protein best DB hits: BLAST: pir:D82536%3B conserved hypothetical protein XF2619 [imported] -%3B E%3D1e-140 pir:T49917%3B hypothetical protein T24H18.200 - Arabidopsis thaliana%3B E%3D1e-100 swissprot:P77649%3B YDIU_ECOLI HYPOTHETICAL 54.4 KD PROTEIN IN%3B E%3D2e-82 COG: XF2619%3B COG0397 Uncharacterized ACR%3B E%3D1e-141 PFAM: PF02696%3B Uncharacterized ACR%2C YdiU/UPF0061%3B E%3D5e-63 gene gene5547 http://www.ncbi.nlm.nih.gov/gene/?term=RB9953 RB9955 RB9955 RB9955 5362247 5363605 - hypothetical protein best DB hits: PFAM: PF01676%3B Metalloenzyme superfamily%3B E%3D0.78 gene gene5548 http://www.ncbi.nlm.nih.gov/gene/?term=RB9955 RB9957 RB9957 RB9957 5363607 5366096 - signal peptide gene gene5549 http://www.ncbi.nlm.nih.gov/gene/?term=RB9957 RB9959 RB9959 RB9959 5366220 5366417 - hypothetical protein gene gene5550 http://www.ncbi.nlm.nih.gov/gene/?term=RB9959 RB9960 RB9960 RB9960 5366418 5367416 + signal peptide gene gene5551 http://www.ncbi.nlm.nih.gov/gene/?term=RB9960 RB9964 RB9964 RB9964 5367674 5368651 - hypothetical protein gene gene5552 http://www.ncbi.nlm.nih.gov/gene/?term=RB9964 RB9966 RB9966 RB9966 5368655 5370040 - hypothetical protein best DB hits: BLAST: pir:C72330%3B astBchuR-related protein - Thermotoga maritima (strain%3B E%3D1e-30 gb:AAB89245.1%3B (AE000964) heme biosynthesis protein (nirJ-2)%3B E%3D2e-14 pir:H72545%3B probable coenzyme PQQ synthesis protein APE1652 -%3B E%3D4e-10 COG: TM0824%3B COG0535 Predicted Fe-S oxidoreductases%3B E%3D1e-31 AF2006%3B COG2896 Molybdenum cofactor biosynthesis enzyme%3B E%3D0.002 MJ0907%3B COG0641 Arylsulfatase regulator (Fe-S oxidoreductase)%3B E%3D0.004 PFAM: PF01444%3B moaA / nifB / pqqE family%3B E%3D0.00043 gene gene5553 http://www.ncbi.nlm.nih.gov/gene/?term=RB9966 RB9969 RB9969 RB9969 5370020 5370340 + hypothetical protein gene gene5554 http://www.ncbi.nlm.nih.gov/gene/?term=RB9969 RB997 RB997 ogt ogt 523512 525038 + O-linked GlcNAc transferase PMID: 9083067 best DB hits: COG: BH1262%3B COG0457 TPR-repeat-containing proteins%3B E%3D3e-05 PFAM: PF00533%3B BRCA1 C Terminus (BRCT) domain%3B E%3D7.9e-06 PF00515%3B TPR Domain%3B E%3D0.012 gene gene538 http://www.ncbi.nlm.nih.gov/gene/?term=RB997 RB9971 RB9971 RB9971 5370350 5371720 + NADH-dependent dyhydrogenase best DB hits: BLAST: ddbj:BAB05884.1%3B (AP001514) BH2165~~unknown conserved protein%3B E%3D3e-11 ddbj:BAB04967.1%3B (AP001511) NADH-dependent dyhydrogenase%3B E%3D1e-09 gb:AAC23913.1%3B (AF039207) NADH-dependent dehydrogenase homolog%3B E%3D2e-09 COG: BH2165%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D3e-12 PFAM: PF01408%3B Oxidoreductase%2C NAD-bin%3B E%3D3.7e-23 gene gene5555 http://www.ncbi.nlm.nih.gov/gene/?term=RB9971 RB9973 RB9973 RB9973 5371844 5373487 - hypothetical protein PMID: 11259647 gene gene5556 http://www.ncbi.nlm.nih.gov/gene/?term=RB9973 RB9977 RB9977 RB9977 5373768 5375321 + hypothetical protein gene gene5557 http://www.ncbi.nlm.nih.gov/gene/?term=RB9977 RB9979 RB9979 RB9979 5375015 5377234 + mismatch binding protein PMID: 10517319 best DB hits: BLAST: gb:AAF35250.1%3B AF227632_1 (AF227632) mismatch binding protein Mus3%3B E 4e-12 pir:T41262%3B mutS family DNA mismatch repair protein - fission yeast%3B E 3e-11 gb:AAB57798.1%3B (AF001535) AGAA.3 [Arabidopsis thaliana]%3B E%3D5e-11 COG: VC0535%3B COG0249 MutS-like ATPases involved in mismatch repair%2C%3B E%3D5e-12 BU429%3B COG0249 MutS-like ATPases involved in mismatch repair%2C family%3B E%3D6e-12 XF1716%3B COG0249 MutS-like ATPases involved in mismatch repair%2C%3B E%3D1e-10 PFAM: PF00488%3B DNA mismatch repair proteins%2C mutS f%3B E%3D0.0026 gene gene5558 http://www.ncbi.nlm.nih.gov/gene/?term=RB9979 RB9981 RB9981 RB9981 5377256 5377441 - hypothetical protein gene gene5559 http://www.ncbi.nlm.nih.gov/gene/?term=RB9981 RB9982 RB9982 RB9982 5377468 5378649 + 3-chlorobenzoate-3%2C4-dioxygenase dyhydrogenase related protein best DB hits: BLAST: embl:CAC24034.1%3B (AL512980) ORF-c34_017 [Sulfolobus solfataricus]%3B E%3D1e-11 pir:H69216%3B 3-chlorobenzoate-3%2C4-dioxygenase dyhydrogenase related%3B E%3D3e-10 pir:T36464%3B probable oxidoreductase - Streptomyces coelicolor%3B E%3D2e-09 COG: MTH875%3B COG0673 Predicted dehydrogenases and related proteins%3B E%3D3e-11 PFAM: PF01408%3B Oxidoreductase%2C NAD-bin%3B E%3D1.1e-09 PF02894%3B Oxidoreductase%2C C-termi%3B E%3D0.0018 gene gene5560 http://www.ncbi.nlm.nih.gov/gene/?term=RB9982 RB9983 RB9983 pmi pmi 5378777 5379757 - mannose-6-phosphate isomerase PMID: 8293960 best DB hits: BLAST: pir:B75598%3B probable mannose-6-phosphate isomerase - Deinococcus%3B E%3D7e-43 pir:H69848%3B mannose-6-phosphate isomerase homolog yjdE - Bacillus%3B E%3D5e-39 ddbj:BAA75351.1%3B (AB011838) mannnose-6 phospate isomelase%3B E%3D8e-39 COG: DRA0048%3B COG1482 Phosphomannose isomerase%3B E%3D7e-44 PFAM: PF01238%3B Phosphomannose isomerase type I%3B E%3D0.0026 gene gene5561 http://www.ncbi.nlm.nih.gov/gene/?term=RB9983 RB9985 RB9985 RB9985 5379828 5380382 - hypothetical protein gene gene5562 http://www.ncbi.nlm.nih.gov/gene/?term=RB9985 RB9986 RB9986 RB9986 5380379 5380717 - hypothetical protein gene gene5563 http://www.ncbi.nlm.nih.gov/gene/?term=RB9986 RB9989 RB9989 RB9989 5380734 5381816 - hypothetical protein gene gene5564 http://www.ncbi.nlm.nih.gov/gene/?term=RB9989 RB9990 RB9990 RB9990 5381822 5381983 + hypothetical protein gene gene5565 http://www.ncbi.nlm.nih.gov/gene/?term=RB9990 RB9992 RB9992 RB9992 5382085 5383545 - iron-regulated ABC transporter best DB hits: BLAST: pir:C75316%3B conserved hypothetical protein - Deinococcus radiodurans%3B E%3D1e-63 gb:AAG19052.1%3B (AE005004) Vng0525c [Halobacterium sp. NRC-1]%3B E%3D1e-47 pir:B72260%3B conserved hypothetical protein - Thermotoga maritima%3B E%3D2e-46 COG: DR2101%3B COG0719 Predicted membrane components of an uncharacterized%3B E%3D1e-64 VNG0525C%3B COG0719 Predicted membrane components of an%3B E%3D1e-48 TM1369%3B COG0719 Predicted membrane components of an uncharacterized%3B E%3D2e-47 PFAM: PF02291%3B Transcription initiation factor IID%2C%3B E%3D0.53 PF01458%3B Uncharacterized protein family (UPF0%3B E%3D2.1e-67 gene gene5566 http://www.ncbi.nlm.nih.gov/gene/?term=RB9992 RB9995 RB9995 RB9995 5383639 5385045 - iron-regulated ABC transporter best DB hits: BLAST: ddbj:BAB07186.1%3B (AP001518) BH3467~~unknown conserved protein%3B E%3D1e-174 pir:T35997%3B conserved hypothetical protein SCC22.07c - Streptomyces%3B E%3D1e-174 pir:D70019%3B conserved hypothetical protein yurU - Bacillus subtilis%3B E%3D1e-171 COG: BH3467%3B COG0719 Predicted membrane components of an uncharacterized%3B E%3D1e-175 VNG0525C%3B COG0719 Predicted membrane components of an%3B E%3D1e-135 TP0612%3B COG0719 Predicted membrane components of an uncharacterized%3B E%3D1e-132 PFAM: PF01458%3B Uncharacterized protein family (UPF0%3B E%3D8.2e-125 gene gene5567 http://www.ncbi.nlm.nih.gov/gene/?term=RB9995 RB9998 RB9998 RB9998 5385104 5385937 - ABC transporter ATP-binding protein best DB hits: BLAST: pir:B70872%3B probable ABC-type transporter ATP-binding protein -%3B E%3D3e-68 swissprot:P80866%3B V296_BACSU VEGETATIVE PROTEIN 296 (VEG296)%3B E%3D4e-66 ddbj:BAB07190.1%3B (AP001518) ABC transporter (ATP-binding protein)%3B E%3D1e-64 COG: Rv1463%3B COG0396 Iron-regulated ABC transporter ATPase subunit SufC%3B E%3D3e-69 PFAM: PF00005%3B ABC transporter%3B E%3D9.6e-30 gene gene5568 http://www.ncbi.nlm.nih.gov/gene/?term=RB9998 RB9999 RB9999 RB9999 5385983 5386828 - transcriptional regulator best DB hits: BLAST: pir:D82048%3B conserved hypothetical protein VC2666 [imported] -%3B E%3D7e-06 ddbj:BAB07148.1%3B (AP001518) BH3429~~unknown conserved protein in%3B E%3D0.001 pir:S72759%3B hypothetical protein B1496_C2_188 - Mycobacterium leprae%3B E%3D0.004 COG: VC2666%3B COG2345 Predicted transcriptional regulator%3B E%3D7e-07 PFAM: PF01037%3B AsnC family%3B E%3D0.23 gene gene5569 http://www.ncbi.nlm.nih.gov/gene/?term=RB9999 RBr01 RBr01 RBr01 4611203 4611312 - 5S ribosomal RNA rRNA gene4857 http://www.ncbi.nlm.nih.gov/gene/?term=RBr01 RBr02 RBr02 RBr02 4611420 4614312 - 23S ribosomal RNA rRNA gene4858 http://www.ncbi.nlm.nih.gov/gene/?term=RBr02 RBr03 RBr03 RBr03 5076964 5078478 - 16S ribosomal RNA rRNA gene5277 http://www.ncbi.nlm.nih.gov/gene/?term=RBr03 RBs01 RBs01 RBs01 6554248 6554592 - gene gene6757 http://www.ncbi.nlm.nih.gov/gene/?term=RBs01 RBt01 RBt01 RBt01 15141 15217 + tRNA-Arg Arg%2C tRNAscan-SE-score 85.59%25 tRNA gene15 http://www.ncbi.nlm.nih.gov/gene/?term=RBt01 RBt02 RBt02 RBt02 86868 86941 + tRNA-Val Val%2C tRNAscan-SE-score 78.76%25 tRNA gene91 http://www.ncbi.nlm.nih.gov/gene/?term=RBt02 RBt03 RBt03 RBt03 133023 133099 + tRNA-Val Val%2C tRNAscan-SE-score 86.79%25 tRNA gene144 http://www.ncbi.nlm.nih.gov/gene/?term=RBt03 RBt04 RBt04 RBt04 231979 232052 + tRNA-Asp Asp%2C tRNAscan-SE-score 84.19%25 tRNA gene249 http://www.ncbi.nlm.nih.gov/gene/?term=RBt04 RBt05 RBt05 RBt05 425584 425655 - tRNA-Leu Leu%2C tRNAscan-SE-score 51.01%25 tRNA gene425 http://www.ncbi.nlm.nih.gov/gene/?term=RBt05 RBt06 RBt06 RBt06 425672 425742 - tRNA-Ala Ala%2C tRNAscan-SE-score 39.71%25 tRNA gene426 http://www.ncbi.nlm.nih.gov/gene/?term=RBt06 RBt07 RBt07 RBt07 426162 426236 - tRNA-Glu Glu%2C tRNAscan-SE-score 47.24%25 tRNA gene427 http://www.ncbi.nlm.nih.gov/gene/?term=RBt07 RBt08 RBt08 RBt08 426431 426504 - tRNA-OTHER Pseudo%2C tRNAscan-SE-score 22.87%25 tRNA gene429 http://www.ncbi.nlm.nih.gov/gene/?term=RBt08 RBt09 RBt09 RBt09 426774 426845 - tRNA-Asn Asn%2C tRNAscan-SE-score 56.40%25 tRNA gene431 http://www.ncbi.nlm.nih.gov/gene/?term=RBt09 RBt10 RBt10 RBt10 426854 426924 - tRNA-Gly Gly%2C tRNAscan-SE-score 47.00%25 tRNA gene432 http://www.ncbi.nlm.nih.gov/gene/?term=RBt10 RBt11 RBt11 RBt11 427045 427117 - tRNA-Lys Lys%2C tRNAscan-SE-score 50.52%25 tRNA gene433 http://www.ncbi.nlm.nih.gov/gene/?term=RBt11 RBt12 RBt12 RBt12 427143 427215 - tRNA-Ile Ile%2C tRNAscan-SE-score 57.92%25 tRNA gene434 http://www.ncbi.nlm.nih.gov/gene/?term=RBt12 RBt13 RBt13 RBt13 427480 427552 - tRNA-Pro Pro%2C tRNAscan-SE-score 46.00%25 tRNA gene435 http://www.ncbi.nlm.nih.gov/gene/?term=RBt13 RBt14 RBt14 RBt14 468301 468382 + tRNA-Ser Ser%2C tRNAscan-SE-score 38.88%25 tRNA gene479 http://www.ncbi.nlm.nih.gov/gene/?term=RBt14 RBt15 RBt15 RBt15 574208 574291 + tRNA-Leu Leu%2C tRNAscan-SE-score 66.67%25 tRNA gene587 http://www.ncbi.nlm.nih.gov/gene/?term=RBt15 RBt16 RBt16 RBt16 790270 790354 + tRNA-Leu Leu%2C tRNAscan-SE-score 67.89%25 tRNA gene826 http://www.ncbi.nlm.nih.gov/gene/?term=RBt16 RBt17 RBt17 RBt17 1034374 1034447 + tRNA-Thr Thr%2C tRNAscan-SE-score 70.78%25 tRNA gene1027 http://www.ncbi.nlm.nih.gov/gene/?term=RBt17 RBt18 RBt18 RBt18 1124293 1124381 + tRNA-Ser Ser%2C tRNAscan-SE-score 70.78%25 tRNA gene1115 http://www.ncbi.nlm.nih.gov/gene/?term=RBt18 RBt19 RBt19 RBt19 1124509 1124581 + tRNA-Lys Lys%2C tRNAscan-SE-score 82.99%25 tRNA gene1116 http://www.ncbi.nlm.nih.gov/gene/?term=RBt19 RBt20 RBt20 RBt20 1209090 1209161 + tRNA-Gln Gln%2C tRNAscan-SE-score 52.03%25 tRNA gene1220 http://www.ncbi.nlm.nih.gov/gene/?term=RBt20 RBt21 RBt21 RBt21 1636075 1636151 - tRNA-Met Met%2C tRNAscan-SE-score 77.91%25 tRNA gene1715 http://www.ncbi.nlm.nih.gov/gene/?term=RBt21 RBt22 RBt22 RBt22 1916738 1916814 - tRNA-Pro Pro%2C tRNAscan-SE-score 61.04%25 tRNA gene2036 http://www.ncbi.nlm.nih.gov/gene/?term=RBt22 RBt23 RBt23 RBt23 2104395 2104468 + tRNA-Arg Arg%2C tRNAscan-SE-score 73.21%25 tRNA gene2250 http://www.ncbi.nlm.nih.gov/gene/?term=RBt23 RBt24 RBt24 RBt24 2156459 2156532 + tRNA-His His%2C tRNAscan-SE-score 79.60%25 tRNA gene2309 http://www.ncbi.nlm.nih.gov/gene/?term=RBt24 RBt25 RBt25 RBt25 2481587 2481660 - tRNA-Arg Arg%2C tRNAscan-SE-score 75.27%25 tRNA gene2712 http://www.ncbi.nlm.nih.gov/gene/?term=RBt25 RBt26 RBt26 RBt26 2823426 2823502 + tRNA-Arg Arg%2C tRNAscan-SE-score 75.25%25 tRNA gene3067 http://www.ncbi.nlm.nih.gov/gene/?term=RBt26 RBt27 RBt27 RBt27 2964996 2965068 - tRNA-Gly Gly%2C tRNAscan-SE-score 83.01%25 tRNA gene3199 http://www.ncbi.nlm.nih.gov/gene/?term=RBt27 RBt28 RBt28 RBt28 3088066 3088138 - tRNA-Ala Ala%2C tRNAscan-SE-score 74.80%25 tRNA gene3320 http://www.ncbi.nlm.nih.gov/gene/?term=RBt28 RBt29 RBt29 RBt29 3163724 3163810 + tRNA-Ser Ser%2C tRNAscan-SE-score 55.02%25 tRNA gene3403 http://www.ncbi.nlm.nih.gov/gene/?term=RBt29 RBt30 RBt30 RBt30 3188257 3188330 + tRNA-Pro Pro%2C tRNAscan-SE-score 76.55%25 tRNA gene3420 http://www.ncbi.nlm.nih.gov/gene/?term=RBt30 RBt31 RBt31 RBt31 3370937 3371021 + tRNA-Leu Leu%2C tRNAscan-SE-score 63.83%25 tRNA gene3604 http://www.ncbi.nlm.nih.gov/gene/?term=RBt31 RBt32 RBt32 RBt32 3655829 3655905 - tRNA-Met Met%2C tRNAscan-SE-score 83.32%25 tRNA gene3880 http://www.ncbi.nlm.nih.gov/gene/?term=RBt32 RBt33 RBt33 RBt33 4216684 4216756 + tRNA-Thr Thr%2C tRNAscan-SE-score 81.25%25 tRNA gene4453 http://www.ncbi.nlm.nih.gov/gene/?term=RBt33 RBt34 RBt34 RBt34 4216923 4217004 + tRNA-Tyr Tyr%2C tRNAscan-SE-score 65.65%25 tRNA gene4454 http://www.ncbi.nlm.nih.gov/gene/?term=RBt34 RBt35 RBt35 RBt35 4217122 4217192 + tRNA-Gly Gly%2C tRNAscan-SE-score 74.03%25 tRNA gene4455 http://www.ncbi.nlm.nih.gov/gene/?term=RBt35 RBt36 RBt36 RBt36 4217195 4217269 + tRNA-Thr Thr%2C tRNAscan-SE-score 75.24%25 tRNA gene4456 http://www.ncbi.nlm.nih.gov/gene/?term=RBt36 RBt37 RBt37 RBt37 4218751 4218823 + tRNA-Trp Trp%2C tRNAscan-SE-score 73.51%25 tRNA gene4458 http://www.ncbi.nlm.nih.gov/gene/?term=RBt37 RBt38 RBt38 RBt38 4355716 4355788 + tRNA-Glu Glu%2C tRNAscan-SE-score 56.70%25 tRNA gene4590 http://www.ncbi.nlm.nih.gov/gene/?term=RBt38 RBt39 RBt39 RBt39 4615129 4615201 - tRNA-Ala Ala%2C tRNAscan-SE-score 82.89%25 tRNA gene4861 http://www.ncbi.nlm.nih.gov/gene/?term=RBt39 RBt40 RBt40 RBt40 4615279 4615352 - tRNA-Ile Ile%2C tRNAscan-SE-score 84.64%25 tRNA gene4862 http://www.ncbi.nlm.nih.gov/gene/?term=RBt40 RBt41 RBt41 RBt41 4667213 4667295 + tRNA-Ser Ser%2C tRNAscan-SE-score 45.48%25 tRNA gene4920 http://www.ncbi.nlm.nih.gov/gene/?term=RBt41 RBt42 RBt42 RBt42 4745532 4745616 - tRNA-Leu Leu%2C tRNAscan-SE-score 62.60%25 tRNA gene4999 http://www.ncbi.nlm.nih.gov/gene/?term=RBt42 RBt43 RBt43 RBt43 5267340 5267412 - tRNA-Asn Asn%2C tRNAscan-SE-score 79.29%25 tRNA gene5449 http://www.ncbi.nlm.nih.gov/gene/?term=RBt43 RBt44 RBt44 RBt44 5343020 5343101 - tRNA-Leu Leu%2C tRNAscan-SE-score 63.77%25 tRNA gene5527 http://www.ncbi.nlm.nih.gov/gene/?term=RBt44 RBt45 RBt45 RBt45 5811610 5811682 - tRNA-Phe Phe%2C tRNAscan-SE-score 82.98%25 tRNA gene5948 http://www.ncbi.nlm.nih.gov/gene/?term=RBt45 RBt46 RBt46 RBt46 5858391 5858464 - tRNA-Arg Arg%2C tRNAscan-SE-score 70.81%25 tRNA gene6003 http://www.ncbi.nlm.nih.gov/gene/?term=RBt46 RBt47 RBt47 RBt47 5880607 5880681 + tRNA-OTHER Pseudo%2C tRNAscan-SE-score 24.23%25 tRNA gene6026 http://www.ncbi.nlm.nih.gov/gene/?term=RBt47 RBt48 RBt48 RBt48 6198097 6198169 - tRNA-OTHER Pseudo%2C tRNAscan-SE-score 24.93%25 tRNA gene6370 http://www.ncbi.nlm.nih.gov/gene/?term=RBt48 RBt49 RBt49 RBt49 6198373 6198444 - tRNA-Arg Arg%2C tRNAscan-SE-score 48.31%25 tRNA gene6371 http://www.ncbi.nlm.nih.gov/gene/?term=RBt49 RBt50 RBt50 RBt50 6198644 6198714 - tRNA-OTHER Pseudo%2C tRNAscan-SE-score 25.97%25 tRNA gene6372 http://www.ncbi.nlm.nih.gov/gene/?term=RBt50 RBt51 RBt51 RBt51 6198726 6198798 - tRNA-Val Val%2C tRNAscan-SE-score 47.52%25 tRNA gene6373 http://www.ncbi.nlm.nih.gov/gene/?term=RBt51 RBt52 RBt52 RBt52 6198809 6198884 - tRNA-Leu Leu%2C tRNAscan-SE-score 39.53%25 tRNA gene6374 http://www.ncbi.nlm.nih.gov/gene/?term=RBt52 RBt53 RBt53 RBt53 6199058 6199141 - tRNA-Leu Leu%2C tRNAscan-SE-score 54.67%25 tRNA gene6375 http://www.ncbi.nlm.nih.gov/gene/?term=RBt53 RBt54 RBt54 RBt54 6199155 6199228 - tRNA-Leu Leu%2C tRNAscan-SE-score 39.47%25 tRNA gene6376 http://www.ncbi.nlm.nih.gov/gene/?term=RBt54 RBt55 RBt55 RBt55 6199241 6199312 - tRNA-Leu Leu%2C tRNAscan-SE-score 51.01%25 tRNA gene6377 http://www.ncbi.nlm.nih.gov/gene/?term=RBt55 RBt56 RBt56 RBt56 6199318 6199388 - tRNA-Ala Ala%2C tRNAscan-SE-score 40.25%25 tRNA gene6378 http://www.ncbi.nlm.nih.gov/gene/?term=RBt56 RBt57 RBt57 RBt57 6199407 6199480 - tRNA-Leu Leu%2C tRNAscan-SE-score 40.38%25 tRNA gene6379 http://www.ncbi.nlm.nih.gov/gene/?term=RBt57 RBt58 RBt58 RBt58 6199865 6199936 - tRNA-Val Val%2C tRNAscan-SE-score 49.17%25 tRNA gene6381 http://www.ncbi.nlm.nih.gov/gene/?term=RBt58 RBt59 RBt59 RBt59 6199956 6200026 - tRNA-Trp Trp%2C tRNAscan-SE-score 42.37%25 tRNA gene6382 http://www.ncbi.nlm.nih.gov/gene/?term=RBt59 RBt60 RBt60 RBt60 6200255 6200329 - tRNA-Glu Glu%2C tRNAscan-SE-score 43.34%25 tRNA gene6384 http://www.ncbi.nlm.nih.gov/gene/?term=RBt60 RBt61 RBt61 RBt61 6200602 6200675 - tRNA-OTHER Pseudo%2C tRNAscan-SE-score 37.89%25 tRNA gene6386 http://www.ncbi.nlm.nih.gov/gene/?term=RBt61 RBt62 RBt62 RBt62 6200692 6200766 - tRNA-Gln Gln%2C tRNAscan-SE-score 53.85%25 tRNA gene6387 http://www.ncbi.nlm.nih.gov/gene/?term=RBt62 RBt63 RBt63 RBt63 6200873 6200944 - tRNA-Gly Gly%2C tRNAscan-SE-score 45.89%25 tRNA gene6388 http://www.ncbi.nlm.nih.gov/gene/?term=RBt63 RBt64 RBt64 RBt64 6201030 6201101 - tRNA-Asn Asn%2C tRNAscan-SE-score 56.40%25 tRNA gene6389 http://www.ncbi.nlm.nih.gov/gene/?term=RBt64 RBt65 RBt65 RBt65 6201110 6201180 - tRNA-Gly Gly%2C tRNAscan-SE-score 47.00%25 tRNA gene6390 http://www.ncbi.nlm.nih.gov/gene/?term=RBt65 RBt66 RBt66 RBt66 6201233 6201304 - tRNA-Ala Ala%2C tRNAscan-SE-score 30.18%25 tRNA gene6391 http://www.ncbi.nlm.nih.gov/gene/?term=RBt66 RBt67 RBt67 RBt67 6201325 6201397 - tRNA-Lys Lys%2C tRNAscan-SE-score 50.52%25 tRNA gene6392 http://www.ncbi.nlm.nih.gov/gene/?term=RBt67 RBt68 RBt68 RBt68 6201475 6201547 - tRNA-Ile Ile%2C tRNAscan-SE-score 72.90%25 tRNA gene6393 http://www.ncbi.nlm.nih.gov/gene/?term=RBt68 RBt69 RBt69 RBt69 6201559 6201631 - tRNA-Lys Lys%2C tRNAscan-SE-score 60.16%25 tRNA gene6394 http://www.ncbi.nlm.nih.gov/gene/?term=RBt69 RBt70 RBt70 RBt70 6201799 6201871 - tRNA-Pro Pro%2C tRNAscan-SE-score 47.08%25 tRNA gene6395 http://www.ncbi.nlm.nih.gov/gene/?term=RBt70 RBt71 RBt71 RBt71 6238009 6238082 - tRNA-Met Met%2C tRNAscan-SE-score 73.09%25 tRNA gene6448 http://www.ncbi.nlm.nih.gov/gene/?term=RBt71 RBt72 RBt72 RBt72 6260778 6260850 + tRNA-Cys Cys%2C tRNAscan-SE-score 74.01%25 tRNA gene6474 http://www.ncbi.nlm.nih.gov/gene/?term=RBt72 RBt73 RBt73 RBt73 6260960 6261032 + tRNA-Lys Lys%2C tRNAscan-SE-score 82.95%25 tRNA gene6475 http://www.ncbi.nlm.nih.gov/gene/?term=RBt73 RBt74 RBt74 RBt74 6578179 6578252 + tRNA-Val Val%2C tRNAscan-SE-score 83.33%25 tRNA gene6787 http://www.ncbi.nlm.nih.gov/gene/?term=RBt74 RBt75 RBt75 RBt75 6988936 6989010 + tRNA-Pro Pro%2C tRNAscan-SE-score 74.82%25 tRNA gene7230 http://www.ncbi.nlm.nih.gov/gene/?term=RBt75