RPE_RS24550 751d3f04c7c258a1677ebd2d2f04e04a 617 Gene3D G3DSA:1.10.150.80 548 613 2.1E-13 T 23-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 RPE_RS24550 751d3f04c7c258a1677ebd2d2f04e04a 617 PANTHER PTHR13710:SF81 1 615 7.9E-282 T 23-04-2016 RPE_RS24550 751d3f04c7c258a1677ebd2d2f04e04a 617 SMART SM00341 543 615 1.8E-10 T 23-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 RPE_RS24550 751d3f04c7c258a1677ebd2d2f04e04a 617 SMART SM00956 417 520 2.0E-51 T 23-04-2016 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 RPE_RS24550 751d3f04c7c258a1677ebd2d2f04e04a 617 SUPERFAMILY SSF47819 546 615 4.36E-21 T 23-04-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 RPE_RS24550 751d3f04c7c258a1677ebd2d2f04e04a 617 SUPERFAMILY SSF52540 11 203 1.52E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS24550 751d3f04c7c258a1677ebd2d2f04e04a 617 SMART SM00487 25 221 5.6E-27 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RPE_RS24550 751d3f04c7c258a1677ebd2d2f04e04a 617 Gene3D G3DSA:1.10.10.10 349 519 2.5E-57 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS24550 751d3f04c7c258a1677ebd2d2f04e04a 617 PANTHER PTHR13710 1 615 7.9E-282 T 23-04-2016 RPE_RS24550 751d3f04c7c258a1677ebd2d2f04e04a 617 SUPERFAMILY SSF52540 211 464 4.67E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS24550 751d3f04c7c258a1677ebd2d2f04e04a 617 Pfam PF09382 RQC domain 412 520 1.0E-38 T 23-04-2016 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 RPE_RS24550 751d3f04c7c258a1677ebd2d2f04e04a 617 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 19 467 1.3E-150 T 23-04-2016 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 RPE_RS24550 751d3f04c7c258a1677ebd2d2f04e04a 617 Pfam PF00270 DEAD/DEAH box helicase 33 188 4.1E-15 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RPE_RS24550 751d3f04c7c258a1677ebd2d2f04e04a 617 SMART SM00490 254 335 1.7E-25 T 23-04-2016 IPR001650 Helicase, C-terminal RPE_RS24550 751d3f04c7c258a1677ebd2d2f04e04a 617 Gene3D G3DSA:3.40.50.300 210 348 1.9E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS24550 751d3f04c7c258a1677ebd2d2f04e04a 617 Pfam PF16124 RecQ zinc-binding 347 410 1.3E-18 T 23-04-2016 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain RPE_RS24550 751d3f04c7c258a1677ebd2d2f04e04a 617 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 19 614 9.6E-235 T 23-04-2016 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 RPE_RS24550 751d3f04c7c258a1677ebd2d2f04e04a 617 Pfam PF00271 Helicase conserved C-terminal domain 227 335 1.1E-14 T 23-04-2016 IPR001650 Helicase, C-terminal RPE_RS24550 751d3f04c7c258a1677ebd2d2f04e04a 617 Gene3D G3DSA:3.40.50.300 16 201 1.5E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS24550 751d3f04c7c258a1677ebd2d2f04e04a 617 Pfam PF00570 HRDC domain 548 613 1.2E-22 T 23-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 RPE_RS14475 6a4597e8d012270c99c0f3d0d415144d 682 PANTHER PTHR11070:SF3 1 618 6.0E-287 T 23-04-2016 RPE_RS14475 6a4597e8d012270c99c0f3d0d415144d 682 PANTHER PTHR11070 1 618 6.0E-287 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RPE_RS14475 6a4597e8d012270c99c0f3d0d415144d 682 Gene3D G3DSA:1.10.486.10 407 532 6.2E-11 T 23-04-2016 RPE_RS14475 6a4597e8d012270c99c0f3d0d415144d 682 Pfam PF13361 UvrD-like helicase C-terminal domain 554 614 6.2E-17 T 23-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RPE_RS14475 6a4597e8d012270c99c0f3d0d415144d 682 Pfam PF13361 UvrD-like helicase C-terminal domain 296 446 2.1E-21 T 23-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RPE_RS14475 6a4597e8d012270c99c0f3d0d415144d 682 Gene3D G3DSA:3.40.50.300 554 627 5.8E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14475 6a4597e8d012270c99c0f3d0d415144d 682 Gene3D G3DSA:3.40.50.300 299 406 5.8E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14475 6a4597e8d012270c99c0f3d0d415144d 682 Pfam PF00580 UvrD/REP helicase N-terminal domain 9 134 8.8E-25 T 23-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 RPE_RS14475 6a4597e8d012270c99c0f3d0d415144d 682 Pfam PF00580 UvrD/REP helicase N-terminal domain 187 288 2.9E-27 T 23-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 RPE_RS14475 6a4597e8d012270c99c0f3d0d415144d 682 Gene3D G3DSA:3.40.50.300 7 290 1.5E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14475 6a4597e8d012270c99c0f3d0d415144d 682 SUPERFAMILY SSF52540 4 625 4.22E-126 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS17375 4ef451f1e9e78f0b67722141ff0d4429 560 Gene3D G3DSA:2.40.160.50 168 556 9.0E-49 T 23-04-2016 RPE_RS17375 4ef451f1e9e78f0b67722141ff0d4429 560 Pfam PF08479 POTRA domain, ShlB-type 55 129 2.4E-11 T 23-04-2016 IPR013686 Polypeptide-transport-associated, ShlB-type RPE_RS17375 4ef451f1e9e78f0b67722141ff0d4429 560 PANTHER PTHR34597:SF1 477 560 9.4E-65 T 23-04-2016 RPE_RS17375 4ef451f1e9e78f0b67722141ff0d4429 560 PANTHER PTHR34597:SF1 44 460 9.4E-65 T 23-04-2016 RPE_RS17375 4ef451f1e9e78f0b67722141ff0d4429 560 PANTHER PTHR34597 477 560 9.4E-65 T 23-04-2016 RPE_RS17375 4ef451f1e9e78f0b67722141ff0d4429 560 PANTHER PTHR34597 44 460 9.4E-65 T 23-04-2016 RPE_RS17375 4ef451f1e9e78f0b67722141ff0d4429 560 Gene3D G3DSA:3.10.20.310 53 129 5.2E-9 T 23-04-2016 RPE_RS18440 a41c61e3c45354be8ef4a0fc188d8703 328 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 208 4.2E-21 T 23-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 RPE_RS18440 a41c61e3c45354be8ef4a0fc188d8703 328 Gene3D G3DSA:3.40.50.720 2 191 7.4E-26 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS18440 a41c61e3c45354be8ef4a0fc188d8703 328 Gene3D G3DSA:3.90.25.10 192 302 6.7E-35 T 23-04-2016 RPE_RS18440 a41c61e3c45354be8ef4a0fc188d8703 328 SUPERFAMILY SSF51735 2 320 1.17E-37 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS18440 a41c61e3c45354be8ef4a0fc188d8703 328 PANTHER PTHR10366:SF440 2 320 1.1E-66 T 23-04-2016 RPE_RS18440 a41c61e3c45354be8ef4a0fc188d8703 328 PANTHER PTHR10366 2 320 1.1E-66 T 23-04-2016 RPE_RS12835 13a67464a2421aef28c460c03f8c3a71 407 PANTHER PTHR30525 1 407 8.5E-211 T 23-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 RPE_RS12835 13a67464a2421aef28c460c03f8c3a71 407 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 17 395 8.4E-138 T 23-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 RPE_RS12835 13a67464a2421aef28c460c03f8c3a71 407 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 19 144 2.5E-37 T 23-04-2016 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 RPE_RS12835 13a67464a2421aef28c460c03f8c3a71 407 SUPERFAMILY SSF51735 17 162 2.9E-43 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS12835 13a67464a2421aef28c460c03f8c3a71 407 SUPERFAMILY SSF55347 138 276 4.25E-58 T 23-04-2016 RPE_RS12835 13a67464a2421aef28c460c03f8c3a71 407 PIRSF PIRSF006205 16 405 1.6E-148 T 23-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 RPE_RS12835 13a67464a2421aef28c460c03f8c3a71 407 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 19 398 43.553 T 23-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 RPE_RS12835 13a67464a2421aef28c460c03f8c3a71 407 SUPERFAMILY SSF69055 303 400 1.22E-27 T 23-04-2016 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 RPE_RS12835 13a67464a2421aef28c460c03f8c3a71 407 Pfam PF13288 DXP reductoisomerase C-terminal domain 273 393 1.8E-38 T 23-04-2016 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 RPE_RS12835 13a67464a2421aef28c460c03f8c3a71 407 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 158 241 4.6E-39 T 23-04-2016 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 RPE_RS12835 13a67464a2421aef28c460c03f8c3a71 407 Gene3D G3DSA:1.10.1740.10 315 400 5.8E-25 T 23-04-2016 RPE_RS12835 13a67464a2421aef28c460c03f8c3a71 407 Gene3D G3DSA:3.40.50.720 13 162 3.8E-45 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS17655 4a09de85c3d0a6d5c7589c50c6da5518 894 Gene3D G3DSA:3.30.450.20 360 479 9.0E-22 T 23-04-2016 RPE_RS17655 4a09de85c3d0a6d5c7589c50c6da5518 894 Pfam PF13426 PAS domain 377 481 5.8E-13 T 23-04-2016 IPR000014 PAS domain RPE_RS17655 4a09de85c3d0a6d5c7589c50c6da5518 894 Pfam PF08448 PAS fold 501 611 9.1E-17 T 23-04-2016 IPR013656 PAS fold-4 RPE_RS17655 4a09de85c3d0a6d5c7589c50c6da5518 894 SUPERFAMILY SSF55874 732 883 4.19E-34 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS17655 4a09de85c3d0a6d5c7589c50c6da5518 894 SUPERFAMILY SSF55785 371 485 2.27E-21 T 23-04-2016 IPR000014 PAS domain RPE_RS17655 4a09de85c3d0a6d5c7589c50c6da5518 894 PANTHER PTHR24423 641 673 2.2E-175 T 23-04-2016 RPE_RS17655 4a09de85c3d0a6d5c7589c50c6da5518 894 PANTHER PTHR24423 45 624 2.2E-175 T 23-04-2016 RPE_RS17655 4a09de85c3d0a6d5c7589c50c6da5518 894 PANTHER PTHR24423 693 893 2.2E-175 T 23-04-2016 RPE_RS17655 4a09de85c3d0a6d5c7589c50c6da5518 894 SUPERFAMILY SSF55785 479 606 1.22E-20 T 23-04-2016 IPR000014 PAS domain RPE_RS17655 4a09de85c3d0a6d5c7589c50c6da5518 894 PRINTS PR00344 Bacterial sensor protein C-terminal signature 868 881 3.65E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS17655 4a09de85c3d0a6d5c7589c50c6da5518 894 PRINTS PR00344 Bacterial sensor protein C-terminal signature 812 826 3.65E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS17655 4a09de85c3d0a6d5c7589c50c6da5518 894 PRINTS PR00344 Bacterial sensor protein C-terminal signature 830 840 3.65E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS17655 4a09de85c3d0a6d5c7589c50c6da5518 894 PRINTS PR00344 Bacterial sensor protein C-terminal signature 843 861 3.65E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS17655 4a09de85c3d0a6d5c7589c50c6da5518 894 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 778 882 7.5E-20 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS17655 4a09de85c3d0a6d5c7589c50c6da5518 894 Pfam PF00672 HAMP domain 277 345 1.6E-7 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS17655 4a09de85c3d0a6d5c7589c50c6da5518 894 PANTHER PTHR24423:SF445 641 673 2.2E-175 T 23-04-2016 RPE_RS17655 4a09de85c3d0a6d5c7589c50c6da5518 894 PANTHER PTHR24423:SF445 45 624 2.2E-175 T 23-04-2016 RPE_RS17655 4a09de85c3d0a6d5c7589c50c6da5518 894 PANTHER PTHR24423:SF445 693 893 2.2E-175 T 23-04-2016 RPE_RS17655 4a09de85c3d0a6d5c7589c50c6da5518 894 Gene3D G3DSA:3.30.565.10 732 882 5.9E-35 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS17655 4a09de85c3d0a6d5c7589c50c6da5518 894 SMART SM00086 567 609 240.0 T 23-04-2016 IPR001610 PAC motif RPE_RS17655 4a09de85c3d0a6d5c7589c50c6da5518 894 SMART SM00086 440 482 1.6E-7 T 23-04-2016 IPR001610 PAC motif RPE_RS17655 4a09de85c3d0a6d5c7589c50c6da5518 894 SUPERFAMILY SSF158472 296 346 1.7E-5 T 23-04-2016 RPE_RS17655 4a09de85c3d0a6d5c7589c50c6da5518 894 SMART SM00387 771 884 4.4E-22 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS17655 4a09de85c3d0a6d5c7589c50c6da5518 894 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 365 488 7.4E-19 T 23-04-2016 IPR000014 PAS domain RPE_RS17655 4a09de85c3d0a6d5c7589c50c6da5518 894 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 493 615 8.0E-13 T 23-04-2016 IPR000014 PAS domain RPE_RS17655 4a09de85c3d0a6d5c7589c50c6da5518 894 Gene3D G3DSA:3.30.450.20 480 602 2.2E-21 T 23-04-2016 RPE_RS17655 4a09de85c3d0a6d5c7589c50c6da5518 894 SMART SM00091 494 560 0.43 T 23-04-2016 IPR000014 PAS domain RPE_RS17655 4a09de85c3d0a6d5c7589c50c6da5518 894 SMART SM00091 366 433 6.4E-5 T 23-04-2016 IPR000014 PAS domain RPE_RS17655 4a09de85c3d0a6d5c7589c50c6da5518 894 SMART SM00304 296 349 2.3E-4 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS12895 bf9540a01ad6e7cd16c4779bd7547fa3 237 PANTHER PTHR33516 107 237 9.3E-78 T 23-04-2016 RPE_RS12895 bf9540a01ad6e7cd16c4779bd7547fa3 237 PANTHER PTHR33516 1 74 9.3E-78 T 23-04-2016 RPE_RS12895 bf9540a01ad6e7cd16c4779bd7547fa3 237 SUPERFAMILY SSF51306 113 235 2.79E-32 T 23-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C RPE_RS12895 bf9540a01ad6e7cd16c4779bd7547fa3 237 PANTHER PTHR33516:SF2 107 237 9.3E-78 T 23-04-2016 RPE_RS12895 bf9540a01ad6e7cd16c4779bd7547fa3 237 PANTHER PTHR33516:SF2 1 74 9.3E-78 T 23-04-2016 RPE_RS12895 bf9540a01ad6e7cd16c4779bd7547fa3 237 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 161 172 1.1E-9 T 23-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 RPE_RS12895 bf9540a01ad6e7cd16c4779bd7547fa3 237 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 190 202 1.1E-9 T 23-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 RPE_RS12895 bf9540a01ad6e7cd16c4779bd7547fa3 237 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 150 160 1.1E-9 T 23-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 RPE_RS12895 bf9540a01ad6e7cd16c4779bd7547fa3 237 TIGRFAM TIGR00498 lexA: repressor LexA 2 236 1.0E-53 T 23-04-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 RPE_RS12895 bf9540a01ad6e7cd16c4779bd7547fa3 237 Gene3D G3DSA:1.10.10.10 2 67 3.9E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS12895 bf9540a01ad6e7cd16c4779bd7547fa3 237 Pfam PF00717 Peptidase S24-like 153 218 2.0E-13 T 23-04-2016 IPR019759 Peptidase S24/S26A/S26B RPE_RS12895 bf9540a01ad6e7cd16c4779bd7547fa3 237 SUPERFAMILY SSF46785 2 68 1.78E-18 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS12895 bf9540a01ad6e7cd16c4779bd7547fa3 237 Pfam PF01726 LexA DNA binding domain 2 63 7.3E-16 T 23-04-2016 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 RPE_RS12895 bf9540a01ad6e7cd16c4779bd7547fa3 237 Hamap MF_00015 LexA repressor [lexA]. 1 237 34.085 T 23-04-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 RPE_RS12895 bf9540a01ad6e7cd16c4779bd7547fa3 237 Gene3D G3DSA:2.10.109.10 115 237 9.8E-39 T 23-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain RPE_RS08865 e6c79633c85ef7ebae8776483cd9dce4 473 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 219 451 8.2E-77 T 23-04-2016 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RPE_RS08865 e6c79633c85ef7ebae8776483cd9dce4 473 Gene3D G3DSA:1.10.8.210 150 205 1.2E-17 T 23-04-2016 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RPE_RS08865 e6c79633c85ef7ebae8776483cd9dce4 473 PIRSF PIRSF036426 1 469 2.1E-164 T 23-04-2016 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RPE_RS08865 e6c79633c85ef7ebae8776483cd9dce4 473 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 220 430 8.2E-46 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RPE_RS08865 e6c79633c85ef7ebae8776483cd9dce4 473 Gene3D G3DSA:3.30.160.110 113 148 1.2E-18 T 23-04-2016 RPE_RS08865 e6c79633c85ef7ebae8776483cd9dce4 473 SUPERFAMILY SSF53790 218 454 1.57E-66 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RPE_RS08865 e6c79633c85ef7ebae8776483cd9dce4 473 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 224 238 - T 23-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RPE_RS08865 e6c79633c85ef7ebae8776483cd9dce4 473 PANTHER PTHR21091 168 430 2.5E-66 T 23-04-2016 RPE_RS08865 e6c79633c85ef7ebae8776483cd9dce4 473 SUPERFAMILY SSF51735 1 112 3.35E-9 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS08865 e6c79633c85ef7ebae8776483cd9dce4 473 Gene3D G3DSA:3.30.950.10 335 462 7.7E-31 T 23-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 RPE_RS08865 e6c79633c85ef7ebae8776483cd9dce4 473 PANTHER PTHR21091:SF16 168 430 2.5E-66 T 23-04-2016 RPE_RS08865 e6c79633c85ef7ebae8776483cd9dce4 473 Gene3D G3DSA:3.40.50.720 1 112 6.3E-18 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS08865 e6c79633c85ef7ebae8776483cd9dce4 473 Pfam PF10414 Sirohaem synthase dimerisation region 151 204 1.3E-18 T 23-04-2016 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RPE_RS08865 e6c79633c85ef7ebae8776483cd9dce4 473 SUPERFAMILY SSF75615 114 208 1.16E-26 T 23-04-2016 RPE_RS08865 e6c79633c85ef7ebae8776483cd9dce4 473 Pfam PF14824 Sirohaem biosynthesis protein central 119 145 3.9E-6 T 23-04-2016 IPR028281 Siroheme synthase, central domain KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RPE_RS08865 e6c79633c85ef7ebae8776483cd9dce4 473 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 204 3.9E-51 T 23-04-2016 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RPE_RS08865 e6c79633c85ef7ebae8776483cd9dce4 473 Gene3D G3DSA:3.40.1010.10 219 334 1.4E-41 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 RPE_RS08865 e6c79633c85ef7ebae8776483cd9dce4 473 Pfam PF13241 Putative NAD(P)-binding 6 115 9.7E-10 T 23-04-2016 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RPE_RS00730 b48db280974a97bd92b3e66f4e2e6886 447 PANTHER PTHR22777 3 442 1.8E-150 T 23-04-2016 RPE_RS00730 b48db280974a97bd92b3e66f4e2e6886 447 Gene3D G3DSA:3.30.465.10 335 432 7.4E-27 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RPE_RS00730 b48db280974a97bd92b3e66f4e2e6886 447 SUPERFAMILY SSF56176 354 439 1.64E-23 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RPE_RS00730 b48db280974a97bd92b3e66f4e2e6886 447 SUPERFAMILY SSF54631 212 358 3.54E-32 T 23-04-2016 RPE_RS00730 b48db280974a97bd92b3e66f4e2e6886 447 Pfam PF03471 Transporter associated domain 357 431 5.9E-20 T 23-04-2016 IPR005170 Transporter-associated domain RPE_RS00730 b48db280974a97bd92b3e66f4e2e6886 447 SMART SM01091 355 433 3.1E-28 T 23-04-2016 IPR005170 Transporter-associated domain RPE_RS00730 b48db280974a97bd92b3e66f4e2e6886 447 Pfam PF01595 Domain of unknown function DUF21 10 199 2.7E-43 T 23-04-2016 IPR002550 Domain of unknown function DUF21 RPE_RS00730 b48db280974a97bd92b3e66f4e2e6886 447 SMART SM00116 226 275 1.5 T 23-04-2016 IPR000644 CBS domain RPE_RS00730 b48db280974a97bd92b3e66f4e2e6886 447 SMART SM00116 292 340 7.8 T 23-04-2016 IPR000644 CBS domain RPE_RS00730 b48db280974a97bd92b3e66f4e2e6886 447 Pfam PF00571 CBS domain 296 340 9.2E-7 T 23-04-2016 IPR000644 CBS domain RPE_RS00730 b48db280974a97bd92b3e66f4e2e6886 447 Pfam PF00571 CBS domain 217 274 3.2E-5 T 23-04-2016 IPR000644 CBS domain RPE_RS00730 b48db280974a97bd92b3e66f4e2e6886 447 Gene3D G3DSA:3.10.580.10 204 334 2.3E-21 T 23-04-2016 RPE_RS19340 611b942ba4d743406924655e399805a4 840 PANTHER PTHR10422:SF6 570 616 9.8E-235 T 23-04-2016 RPE_RS19340 611b942ba4d743406924655e399805a4 840 PANTHER PTHR10422:SF6 18 551 9.8E-235 T 23-04-2016 RPE_RS19340 611b942ba4d743406924655e399805a4 840 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 34 537 1.2E-215 T 23-04-2016 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005507|GO:0005886|GO:0006810|GO:0022900|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS19340 611b942ba4d743406924655e399805a4 840 Gene3D G3DSA:1.20.210.10 33 547 5.7E-164 T 23-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS19340 611b942ba4d743406924655e399805a4 840 PANTHER PTHR10422 570 616 9.8E-235 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS19340 611b942ba4d743406924655e399805a4 840 PANTHER PTHR10422 18 551 9.8E-235 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS19340 611b942ba4d743406924655e399805a4 840 SUPERFAMILY SSF81442 31 539 5.63E-161 T 23-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS19340 611b942ba4d743406924655e399805a4 840 PRINTS PR01165 Cytochrome c oxidase subunit I signature 180 198 3.2E-81 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS19340 611b942ba4d743406924655e399805a4 840 PRINTS PR01165 Cytochrome c oxidase subunit I signature 79 102 3.2E-81 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS19340 611b942ba4d743406924655e399805a4 840 PRINTS PR01165 Cytochrome c oxidase subunit I signature 306 321 3.2E-81 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS19340 611b942ba4d743406924655e399805a4 840 PRINTS PR01165 Cytochrome c oxidase subunit I signature 106 130 3.2E-81 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS19340 611b942ba4d743406924655e399805a4 840 PRINTS PR01165 Cytochrome c oxidase subunit I signature 148 160 3.2E-81 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS19340 611b942ba4d743406924655e399805a4 840 PRINTS PR01165 Cytochrome c oxidase subunit I signature 209 228 3.2E-81 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS19340 611b942ba4d743406924655e399805a4 840 PRINTS PR01165 Cytochrome c oxidase subunit I signature 393 412 3.2E-81 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS19340 611b942ba4d743406924655e399805a4 840 PRINTS PR01165 Cytochrome c oxidase subunit I signature 330 351 3.2E-81 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS19340 611b942ba4d743406924655e399805a4 840 PRINTS PR01165 Cytochrome c oxidase subunit I signature 32 57 3.2E-81 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS19340 611b942ba4d743406924655e399805a4 840 PRINTS PR01165 Cytochrome c oxidase subunit I signature 443 464 3.2E-81 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS19340 611b942ba4d743406924655e399805a4 840 PRINTS PR01165 Cytochrome c oxidase subunit I signature 260 281 3.2E-81 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS19340 611b942ba4d743406924655e399805a4 840 PRINTS PR01165 Cytochrome c oxidase subunit I signature 365 383 3.2E-81 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS19340 611b942ba4d743406924655e399805a4 840 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 42 486 7.1E-138 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS19340 611b942ba4d743406924655e399805a4 840 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 262 316 - T 23-04-2016 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS01600 4c9d180c3eff9edc7ac47126eadd0238 278 PANTHER PTHR11079 191 278 1.9E-51 T 23-04-2016 RPE_RS01600 4c9d180c3eff9edc7ac47126eadd0238 278 PANTHER PTHR11079 11 151 1.9E-51 T 23-04-2016 RPE_RS01600 4c9d180c3eff9edc7ac47126eadd0238 278 SUPERFAMILY SSF55120 20 152 9.6E-56 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RPE_RS01600 4c9d180c3eff9edc7ac47126eadd0238 278 SUPERFAMILY SSF55120 192 276 9.6E-56 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RPE_RS01600 4c9d180c3eff9edc7ac47126eadd0238 278 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 68 82 - T 23-04-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 RPE_RS01600 4c9d180c3eff9edc7ac47126eadd0238 278 PANTHER PTHR11079:SF60 191 278 1.9E-51 T 23-04-2016 RPE_RS01600 4c9d180c3eff9edc7ac47126eadd0238 278 PANTHER PTHR11079:SF60 11 151 1.9E-51 T 23-04-2016 RPE_RS01600 4c9d180c3eff9edc7ac47126eadd0238 278 Pfam PF00849 RNA pseudouridylate synthase 30 216 6.3E-29 T 23-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RPE_RS17910 df221dabc940ab0d5b2a916426d5aedd 104 Pfam PF00467 KOW motif 7 25 5.7E-5 T 23-04-2016 IPR005824 KOW RPE_RS17910 df221dabc940ab0d5b2a916426d5aedd 104 SUPERFAMILY SSF50104 2 98 1.34E-30 T 23-04-2016 IPR008991 Translation protein SH3-like domain RPE_RS17910 df221dabc940ab0d5b2a916426d5aedd 104 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 3 102 2.5E-35 T 23-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17910 df221dabc940ab0d5b2a916426d5aedd 104 Gene3D G3DSA:2.30.30.30 3 91 6.4E-23 T 23-04-2016 IPR014722 Ribosomal protein L2 domain 2 RPE_RS17910 df221dabc940ab0d5b2a916426d5aedd 104 SMART SM00739 4 31 3.9E-4 T 23-04-2016 IPR005824 KOW RPE_RS17910 df221dabc940ab0d5b2a916426d5aedd 104 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 40 102 1.8E-25 T 23-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17910 df221dabc940ab0d5b2a916426d5aedd 104 ProSitePatterns PS01108 Ribosomal protein L24 signature. 8 25 - T 23-04-2016 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17910 df221dabc940ab0d5b2a916426d5aedd 104 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 3 96 20.668 T 23-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17910 df221dabc940ab0d5b2a916426d5aedd 104 PANTHER PTHR12903 4 103 8.0E-40 T 23-04-2016 RPE_RS17815 db9ffd050e1457d165828703dc2ac507 442 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 28 153 2.3E-14 T 23-04-2016 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 RPE_RS17815 db9ffd050e1457d165828703dc2ac507 442 PANTHER PTHR13779:SF7 25 441 3.3E-179 T 23-04-2016 RPE_RS17815 db9ffd050e1457d165828703dc2ac507 442 Gene3D G3DSA:1.10.3710.10 349 440 2.8E-30 T 23-04-2016 RPE_RS17815 db9ffd050e1457d165828703dc2ac507 442 SUPERFAMILY SSF48019 254 438 7.37E-75 T 23-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 RPE_RS17815 db9ffd050e1457d165828703dc2ac507 442 Pfam PF16193 AAA C-terminal domain 193 268 1.1E-20 T 23-04-2016 IPR032423 AAA ATPase, C-terminal domain RPE_RS17815 db9ffd050e1457d165828703dc2ac507 442 SUPERFAMILY SSF52540 24 230 3.54E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS17815 db9ffd050e1457d165828703dc2ac507 442 Gene3D G3DSA:3.40.50.300 216 251 2.1E-4 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS17815 db9ffd050e1457d165828703dc2ac507 442 Gene3D G3DSA:1.20.272.10 252 348 1.2E-44 T 23-04-2016 RPE_RS17815 db9ffd050e1457d165828703dc2ac507 442 Gene3D G3DSA:1.10.8.60 164 215 8.5E-8 T 23-04-2016 RPE_RS17815 db9ffd050e1457d165828703dc2ac507 442 PANTHER PTHR13779 25 441 3.3E-179 T 23-04-2016 RPE_RS17815 db9ffd050e1457d165828703dc2ac507 442 Gene3D G3DSA:3.40.50.300 24 163 1.2E-28 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS17815 db9ffd050e1457d165828703dc2ac507 442 SMART SM00382 59 175 1.3E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS17815 db9ffd050e1457d165828703dc2ac507 442 Pfam PF12002 MgsA AAA+ ATPase C terminal 269 434 1.2E-67 T 23-04-2016 IPR021886 MgsA AAA+ ATPase C-terminal RPE_RS03380 c7910594b81a60be63a44ab713a1d0d5 159 SMART SM00347 29 133 0.0074 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RPE_RS03380 c7910594b81a60be63a44ab713a1d0d5 159 SUPERFAMILY SSF46785 11 143 6.18E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS03380 c7910594b81a60be63a44ab713a1d0d5 159 Gene3D G3DSA:1.10.10.10 4 143 1.9E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS03380 c7910594b81a60be63a44ab713a1d0d5 159 PRINTS PR00598 Bacterial regulatory protein MarR family signature 56 72 1.8E-7 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RPE_RS03380 c7910594b81a60be63a44ab713a1d0d5 159 PRINTS PR00598 Bacterial regulatory protein MarR family signature 73 88 1.8E-7 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RPE_RS03380 c7910594b81a60be63a44ab713a1d0d5 159 PRINTS PR00598 Bacterial regulatory protein MarR family signature 123 143 1.8E-7 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RPE_RS03380 c7910594b81a60be63a44ab713a1d0d5 159 PRINTS PR00598 Bacterial regulatory protein MarR family signature 92 108 1.8E-7 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RPE_RS03380 c7910594b81a60be63a44ab713a1d0d5 159 PANTHER PTHR33164 13 157 2.3E-35 T 23-04-2016 RPE_RS03380 c7910594b81a60be63a44ab713a1d0d5 159 Pfam PF12802 MarR family 35 96 5.9E-12 T 23-04-2016 RPE_RS03380 c7910594b81a60be63a44ab713a1d0d5 159 PANTHER PTHR33164:SF4 13 157 2.3E-35 T 23-04-2016 RPE_RS04200 8e6e3ad25bfa9b3e0e0a59959a1d9fff 694 PANTHER PTHR24031 8 351 4.2E-142 T 23-04-2016 RPE_RS04200 8e6e3ad25bfa9b3e0e0a59959a1d9fff 694 PANTHER PTHR24031 413 438 4.2E-142 T 23-04-2016 RPE_RS04200 8e6e3ad25bfa9b3e0e0a59959a1d9fff 694 PANTHER PTHR24031 549 559 4.2E-142 T 23-04-2016 RPE_RS04200 8e6e3ad25bfa9b3e0e0a59959a1d9fff 694 Pfam PF00270 DEAD/DEAH box helicase 23 192 2.0E-42 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RPE_RS04200 8e6e3ad25bfa9b3e0e0a59959a1d9fff 694 Gene3D G3DSA:3.40.50.300 208 363 4.5E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS04200 8e6e3ad25bfa9b3e0e0a59959a1d9fff 694 SMART SM00487 18 219 2.5E-48 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RPE_RS04200 8e6e3ad25bfa9b3e0e0a59959a1d9fff 694 PANTHER PTHR24031:SF145 8 351 4.2E-142 T 23-04-2016 RPE_RS04200 8e6e3ad25bfa9b3e0e0a59959a1d9fff 694 PANTHER PTHR24031:SF145 413 438 4.2E-142 T 23-04-2016 RPE_RS04200 8e6e3ad25bfa9b3e0e0a59959a1d9fff 694 PANTHER PTHR24031:SF145 549 559 4.2E-142 T 23-04-2016 RPE_RS04200 8e6e3ad25bfa9b3e0e0a59959a1d9fff 694 Pfam PF03880 DbpA RNA binding domain 487 556 1.1E-12 T 23-04-2016 IPR005580 DbpA, RNA-binding domain RPE_RS04200 8e6e3ad25bfa9b3e0e0a59959a1d9fff 694 SUPERFAMILY SSF52540 75 352 4.78E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS04200 8e6e3ad25bfa9b3e0e0a59959a1d9fff 694 SMART SM00490 257 338 6.3E-27 T 23-04-2016 IPR001650 Helicase, C-terminal RPE_RS04200 8e6e3ad25bfa9b3e0e0a59959a1d9fff 694 Gene3D G3DSA:3.40.50.300 6 207 1.4E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS04200 8e6e3ad25bfa9b3e0e0a59959a1d9fff 694 Pfam PF00271 Helicase conserved C-terminal domain 243 338 2.3E-24 T 23-04-2016 IPR001650 Helicase, C-terminal RPE_RS04200 8e6e3ad25bfa9b3e0e0a59959a1d9fff 694 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 152 160 - T 23-04-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site RPE_RS09680 001fc6dbcecd2851c9aeaf5cdfac63c7 190 Pfam PF11351 Holin of 3TMs, for gene-transfer release 69 163 1.1E-8 T 23-04-2016 IPR021497 Holin of 3TMs, for gene-transfer release RPE_RS04780 e14418d5cca7622aa287c52031cb42b1 691 Gene3D G3DSA:1.20.5.100 657 689 5.7E-18 T 23-04-2016 RPE_RS04780 e14418d5cca7622aa287c52031cb42b1 691 Gene3D G3DSA:1.20.810.10 15 394 2.2E-169 T 23-04-2016 IPR027387 Cytochrome b/b6-like domain RPE_RS04780 e14418d5cca7622aa287c52031cb42b1 691 PANTHER PTHR19271 11 420 8.8E-247 T 23-04-2016 RPE_RS04780 e14418d5cca7622aa287c52031cb42b1 691 SUPERFAMILY SSF46626 445 655 4.66E-64 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS04780 e14418d5cca7622aa287c52031cb42b1 691 Pfam PF00033 Cytochrome b/b6/petB 32 219 2.3E-76 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 RPE_RS04780 e14418d5cca7622aa287c52031cb42b1 691 SUPERFAMILY SSF81342 15 277 4.24E-105 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 RPE_RS04780 e14418d5cca7622aa287c52031cb42b1 691 PRINTS PR00603 Cytochrome C1 signature 468 487 1.6E-61 T 23-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RPE_RS04780 e14418d5cca7622aa287c52031cb42b1 691 PRINTS PR00603 Cytochrome C1 signature 516 536 1.6E-61 T 23-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RPE_RS04780 e14418d5cca7622aa287c52031cb42b1 691 PRINTS PR00603 Cytochrome C1 signature 549 573 1.6E-61 T 23-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RPE_RS04780 e14418d5cca7622aa287c52031cb42b1 691 PRINTS PR00603 Cytochrome C1 signature 637 656 1.6E-61 T 23-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RPE_RS04780 e14418d5cca7622aa287c52031cb42b1 691 PRINTS PR00603 Cytochrome C1 signature 448 467 1.6E-61 T 23-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RPE_RS04780 e14418d5cca7622aa287c52031cb42b1 691 PRINTS PR00603 Cytochrome C1 signature 656 671 1.6E-61 T 23-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RPE_RS04780 e14418d5cca7622aa287c52031cb42b1 691 PRINTS PR00603 Cytochrome C1 signature 617 636 1.6E-61 T 23-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RPE_RS04780 e14418d5cca7622aa287c52031cb42b1 691 PRINTS PR00603 Cytochrome C1 signature 606 617 1.6E-61 T 23-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RPE_RS04780 e14418d5cca7622aa287c52031cb42b1 691 SUPERFAMILY SSF81648 278 398 1.61E-42 T 23-04-2016 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 RPE_RS04780 e14418d5cca7622aa287c52031cb42b1 691 PANTHER PTHR19271:SF9 11 420 8.8E-247 T 23-04-2016 RPE_RS04780 e14418d5cca7622aa287c52031cb42b1 691 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 275 376 7.9E-41 T 23-04-2016 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 RPE_RS04780 e14418d5cca7622aa287c52031cb42b1 691 Gene3D G3DSA:1.10.760.10 443 656 1.1E-81 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS04780 e14418d5cca7622aa287c52031cb42b1 691 Pfam PF02167 Cytochrome C1 family 450 689 9.8E-99 T 23-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RPE_RS23455 f7d8084962235647ae41bbcc667f9d03 413 PANTHER PTHR11748:SF1 3 409 7.8E-121 T 23-04-2016 RPE_RS23455 f7d8084962235647ae41bbcc667f9d03 413 Gene3D G3DSA:3.30.465.10 55 183 1.1E-20 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RPE_RS23455 f7d8084962235647ae41bbcc667f9d03 413 PANTHER PTHR11748 3 409 7.8E-121 T 23-04-2016 RPE_RS23455 f7d8084962235647ae41bbcc667f9d03 413 Pfam PF01565 FAD binding domain 4 141 2.4E-18 T 23-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RPE_RS23455 f7d8084962235647ae41bbcc667f9d03 413 SUPERFAMILY SSF56176 4 183 3.64E-35 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RPE_RS23455 f7d8084962235647ae41bbcc667f9d03 413 SUPERFAMILY SSF55103 198 409 3.6E-25 T 23-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RPE_RS23455 f7d8084962235647ae41bbcc667f9d03 413 Gene3D G3DSA:1.10.45.10 387 407 2.6E-6 T 23-04-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 RPE_RS23455 f7d8084962235647ae41bbcc667f9d03 413 Pfam PF02913 FAD linked oxidases, C-terminal domain 387 406 0.0024 T 23-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 RPE_RS18080 8f86eadf9e42b4ea9128f27ad07da93b 361 PANTHER PTHR12302 145 278 2.1E-17 T 23-04-2016 RPE_RS18080 8f86eadf9e42b4ea9128f27ad07da93b 361 SMART SM00318 139 264 5.3E-5 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RPE_RS18080 8f86eadf9e42b4ea9128f27ad07da93b 361 PANTHER PTHR12302:SF0 145 278 2.1E-17 T 23-04-2016 RPE_RS18080 8f86eadf9e42b4ea9128f27ad07da93b 361 SUPERFAMILY SSF50199 139 269 6.8E-26 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RPE_RS18080 8f86eadf9e42b4ea9128f27ad07da93b 361 Pfam PF00565 Staphylococcal nuclease homologue 161 263 1.0E-7 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RPE_RS18080 8f86eadf9e42b4ea9128f27ad07da93b 361 Pfam PF03330 Lytic transglycolase 49 127 8.6E-8 T 23-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain RPE_RS18080 8f86eadf9e42b4ea9128f27ad07da93b 361 Gene3D G3DSA:2.40.50.90 138 236 1.2E-14 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RPE_RS18080 8f86eadf9e42b4ea9128f27ad07da93b 361 SUPERFAMILY SSF50685 48 128 2.51E-5 T 23-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain RPE_RS03975 a0e9302e61d075938df04e08744a48b1 224 Pfam PF13462 Thioredoxin 59 214 7.6E-22 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS03975 a0e9302e61d075938df04e08744a48b1 224 SUPERFAMILY SSF52833 48 214 2.95E-39 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS03975 a0e9302e61d075938df04e08744a48b1 224 PANTHER PTHR13887:SF25 16 221 6.6E-70 T 23-04-2016 RPE_RS03975 a0e9302e61d075938df04e08744a48b1 224 Gene3D G3DSA:3.40.30.10 50 219 2.3E-40 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS03975 a0e9302e61d075938df04e08744a48b1 224 PANTHER PTHR13887 16 221 6.6E-70 T 23-04-2016 RPE_RS02800 c5668f095746c1d616a93131f977934e 544 PANTHER PTHR30349:SF20 223 529 1.3E-20 T 23-04-2016 RPE_RS02800 c5668f095746c1d616a93131f977934e 544 Gene3D G3DSA:1.10.443.10 316 495 1.7E-15 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 RPE_RS02800 c5668f095746c1d616a93131f977934e 544 SUPERFAMILY SSF56349 216 505 4.41E-30 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RPE_RS02800 c5668f095746c1d616a93131f977934e 544 PANTHER PTHR30349 223 529 1.3E-20 T 23-04-2016 RPE_RS02800 c5668f095746c1d616a93131f977934e 544 Pfam PF00589 Phage integrase family 340 488 3.2E-7 T 23-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RPE_RS02800 c5668f095746c1d616a93131f977934e 544 Gene3D G3DSA:1.10.150.130 217 305 4.7E-4 T 23-04-2016 IPR023109 Integrase/recombinase, N-terminal RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 SUPERFAMILY SSF55874 518 688 7.33E-37 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 PANTHER PTHR24423 288 307 7.2E-196 T 23-04-2016 RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 SUPERFAMILY SSF55785 45 159 1.22E-8 T 23-04-2016 IPR000014 PAS domain RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 Gene3D G3DSA:3.30.450.20 152 298 1.4E-24 T 23-04-2016 RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 PANTHER PTHR24423 327 824 7.2E-196 T 23-04-2016 RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 PANTHER PTHR24423 42 156 7.2E-196 T 23-04-2016 RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 SUPERFAMILY SSF55785 334 438 5.8E-18 T 23-04-2016 IPR000014 PAS domain RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 569 688 8.4E-15 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 SMART SM00448 711 820 5.0E-25 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 SUPERFAMILY SSF47384 451 524 3.73E-11 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 PANTHER PTHR24423:SF438 288 307 7.2E-196 T 23-04-2016 RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 Gene3D G3DSA:3.40.50.2300 709 826 3.4E-32 T 23-04-2016 RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 SUPERFAMILY SSF52172 710 825 9.53E-30 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 SMART SM00387 568 690 1.7E-25 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 SMART SM00091 329 394 0.027 T 23-04-2016 IPR000014 PAS domain RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 SMART SM00091 44 114 64.0 T 23-04-2016 IPR000014 PAS domain RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 Gene3D G3DSA:3.30.450.20 48 151 6.3E-7 T 23-04-2016 RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 Pfam PF08448 PAS fold 66 162 8.4E-7 T 23-04-2016 IPR013656 PAS fold-4 RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 Pfam PF00512 His Kinase A (phospho-acceptor) domain 460 525 3.7E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 SUPERFAMILY SSF55785 200 300 1.24E-12 T 23-04-2016 IPR000014 PAS domain RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 225 299 1.2E-5 T 23-04-2016 IPR000014 PAS domain RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 328 442 1.9E-12 T 23-04-2016 IPR000014 PAS domain RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 PRINTS PR00344 Bacterial sensor protein C-terminal signature 637 647 1.4E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 PRINTS PR00344 Bacterial sensor protein C-terminal signature 674 687 1.4E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 PRINTS PR00344 Bacterial sensor protein C-terminal signature 650 668 1.4E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 PRINTS PR00344 Bacterial sensor protein C-terminal signature 619 633 1.4E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 SMART SM00086 250 292 0.0065 T 23-04-2016 IPR001610 PAC motif RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 SMART SM00086 401 437 17.0 T 23-04-2016 IPR001610 PAC motif RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 Gene3D G3DSA:3.30.565.10 514 689 6.4E-35 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 Gene3D G3DSA:1.10.287.130 452 513 1.7E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 PANTHER PTHR24423:SF438 327 824 7.2E-196 T 23-04-2016 RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 PANTHER PTHR24423:SF438 42 156 7.2E-196 T 23-04-2016 RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 Pfam PF08447 PAS fold 353 423 2.4E-7 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 Pfam PF08447 PAS fold 200 285 7.2E-15 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 Pfam PF00072 Response regulator receiver domain 713 820 4.5E-20 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 Gene3D G3DSA:3.30.450.20 299 435 1.8E-21 T 23-04-2016 RPE_RS01185 a32595c2b001d505da8d741492dfcb08 832 SMART SM00388 459 527 5.2E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS00975 ed5842c0fb68cb95ac3b72e24d21652c 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 5 89 2.6E-33 T 23-04-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 RPE_RS00975 ed5842c0fb68cb95ac3b72e24d21652c 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 23-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS00975 ed5842c0fb68cb95ac3b72e24d21652c 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 10 88 1.0E-39 T 23-04-2016 RPE_RS00975 ed5842c0fb68cb95ac3b72e24d21652c 89 PANTHER PTHR23321 1 89 2.1E-37 T 23-04-2016 RPE_RS00975 ed5842c0fb68cb95ac3b72e24d21652c 89 SMART SM01387 8 88 7.1E-46 T 23-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS00975 ed5842c0fb68cb95ac3b72e24d21652c 89 Pfam PF00312 Ribosomal protein S15 8 88 9.0E-33 T 23-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS00975 ed5842c0fb68cb95ac3b72e24d21652c 89 SUPERFAMILY SSF47060 3 89 1.15E-30 T 23-04-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 RPE_RS00975 ed5842c0fb68cb95ac3b72e24d21652c 89 Gene3D G3DSA:1.10.287.10 3 89 1.6E-34 T 23-04-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 RPE_RS00975 ed5842c0fb68cb95ac3b72e24d21652c 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 20.233 T 23-04-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 RPE_RS23695 e42c28ae2dc3fa056ec0f5d55b0883a3 200 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 4 191 32.085 T 23-04-2016 IPR004507 Flavin prenyltransferase UbiX/Pad1 RPE_RS23695 e42c28ae2dc3fa056ec0f5d55b0883a3 200 SUPERFAMILY SSF52507 5 180 1.83E-47 T 23-04-2016 IPR003382 Flavoprotein GO:0003824 RPE_RS23695 e42c28ae2dc3fa056ec0f5d55b0883a3 200 Gene3D G3DSA:3.40.50.1950 5 181 2.7E-61 T 23-04-2016 IPR003382 Flavoprotein GO:0003824 RPE_RS23695 e42c28ae2dc3fa056ec0f5d55b0883a3 200 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 5 181 9.0E-56 T 23-04-2016 IPR004507 Flavin prenyltransferase UbiX/Pad1 RPE_RS23695 e42c28ae2dc3fa056ec0f5d55b0883a3 200 PANTHER PTHR30108:SF10 5 177 6.2E-73 T 23-04-2016 RPE_RS23695 e42c28ae2dc3fa056ec0f5d55b0883a3 200 Pfam PF02441 Flavoprotein 5 130 1.9E-22 T 23-04-2016 IPR003382 Flavoprotein GO:0003824 RPE_RS23695 e42c28ae2dc3fa056ec0f5d55b0883a3 200 PANTHER PTHR30108 5 177 6.2E-73 T 23-04-2016 RPE_RS19665 cc4b96fe5f576f58142f063b2f623745 246 PANTHER PTHR11124:SF2 183 246 1.3E-43 T 23-04-2016 RPE_RS19665 cc4b96fe5f576f58142f063b2f623745 246 PANTHER PTHR11124:SF2 1 75 1.3E-43 T 23-04-2016 RPE_RS19665 cc4b96fe5f576f58142f063b2f623745 246 PANTHER PTHR11124:SF2 99 161 1.3E-43 T 23-04-2016 RPE_RS19665 cc4b96fe5f576f58142f063b2f623745 246 SUPERFAMILY SSF56300 3 246 3.64E-48 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RPE_RS19665 cc4b96fe5f576f58142f063b2f623745 246 Gene3D G3DSA:3.60.21.10 3 246 6.2E-64 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RPE_RS19665 cc4b96fe5f576f58142f063b2f623745 246 PANTHER PTHR11124 99 161 1.3E-43 T 23-04-2016 IPR000979 Phosphodiesterase MJ0936/Vps29 RPE_RS19665 cc4b96fe5f576f58142f063b2f623745 246 PANTHER PTHR11124 183 246 1.3E-43 T 23-04-2016 IPR000979 Phosphodiesterase MJ0936/Vps29 RPE_RS19665 cc4b96fe5f576f58142f063b2f623745 246 PANTHER PTHR11124 1 75 1.3E-43 T 23-04-2016 IPR000979 Phosphodiesterase MJ0936/Vps29 RPE_RS19665 cc4b96fe5f576f58142f063b2f623745 246 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 2 210 1.2E-20 T 23-04-2016 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type RPE_RS19665 cc4b96fe5f576f58142f063b2f623745 246 PIRSF PIRSF000883 1 246 1.7E-48 T 23-04-2016 IPR011152 Phosphoesterase MJ0912 RPE_RS18500 722e59d4227864718b757d51f459387d 613 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 137 202 8.8E-14 T 23-04-2016 IPR000160 GGDEF domain RPE_RS18500 722e59d4227864718b757d51f459387d 613 SMART SM00304 81 133 9.4E-5 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS18500 722e59d4227864718b757d51f459387d 613 Pfam PF00563 EAL domain 333 567 6.1E-73 T 23-04-2016 IPR001633 EAL domain RPE_RS18500 722e59d4227864718b757d51f459387d 613 SMART SM00267 128 317 8.3E-31 T 23-04-2016 IPR000160 GGDEF domain RPE_RS18500 722e59d4227864718b757d51f459387d 613 Pfam PF00990 Diguanylate cyclase, GGDEF domain 139 203 1.4E-15 T 23-04-2016 IPR000160 GGDEF domain RPE_RS18500 722e59d4227864718b757d51f459387d 613 Pfam PF00990 Diguanylate cyclase, GGDEF domain 231 311 1.8E-9 T 23-04-2016 IPR000160 GGDEF domain RPE_RS18500 722e59d4227864718b757d51f459387d 613 Gene3D G3DSA:3.30.70.270 141 322 1.0E-37 T 23-04-2016 RPE_RS18500 722e59d4227864718b757d51f459387d 613 SMART SM00052 327 572 1.6E-117 T 23-04-2016 IPR001633 EAL domain RPE_RS18500 722e59d4227864718b757d51f459387d 613 SUPERFAMILY SSF141868 332 579 7.06E-87 T 23-04-2016 IPR001633 EAL domain RPE_RS18500 722e59d4227864718b757d51f459387d 613 SUPERFAMILY SSF158472 83 129 4.45E-5 T 23-04-2016 RPE_RS18500 722e59d4227864718b757d51f459387d 613 Gene3D G3DSA:3.20.20.450 330 579 8.1E-94 T 23-04-2016 IPR001633 EAL domain RPE_RS18500 722e59d4227864718b757d51f459387d 613 SUPERFAMILY SSF55073 144 313 4.32E-29 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS18500 722e59d4227864718b757d51f459387d 613 PANTHER PTHR33121 275 603 6.3E-88 T 23-04-2016 RPE_RS18500 722e59d4227864718b757d51f459387d 613 PANTHER PTHR33121:SF13 275 603 6.3E-88 T 23-04-2016 RPE_RS18500 722e59d4227864718b757d51f459387d 613 Pfam PF00672 HAMP domain 64 129 8.7E-7 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS22715 39214cae5deacb2517bf9bcb24005f8b 47 Gene3D G3DSA:1.20.5.250 7 46 1.4E-21 T 23-04-2016 RPE_RS22715 39214cae5deacb2517bf9bcb24005f8b 47 Pfam PF00556 Antenna complex alpha/beta subunit 13 46 6.1E-10 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS22715 39214cae5deacb2517bf9bcb24005f8b 47 ProSitePatterns PS00969 Antenna complexes beta subunits signature. 13 44 - T 23-04-2016 IPR023623 Antenna complex, beta subunit, conserved site RPE_RS22715 39214cae5deacb2517bf9bcb24005f8b 47 PRINTS PR00674 Light harvesting protein B chain signature 28 45 1.3E-13 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS22715 39214cae5deacb2517bf9bcb24005f8b 47 PRINTS PR00674 Light harvesting protein B chain signature 8 28 1.3E-13 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS22715 39214cae5deacb2517bf9bcb24005f8b 47 SUPERFAMILY SSF56918 3 46 4.71E-15 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS22715 39214cae5deacb2517bf9bcb24005f8b 47 PIRSF PIRSF002900 1 47 8.6E-18 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS03140 39214cae5deacb2517bf9bcb24005f8b 47 Gene3D G3DSA:1.20.5.250 7 46 1.4E-21 T 23-04-2016 RPE_RS03140 39214cae5deacb2517bf9bcb24005f8b 47 Pfam PF00556 Antenna complex alpha/beta subunit 13 46 6.1E-10 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS03140 39214cae5deacb2517bf9bcb24005f8b 47 ProSitePatterns PS00969 Antenna complexes beta subunits signature. 13 44 - T 23-04-2016 IPR023623 Antenna complex, beta subunit, conserved site RPE_RS03140 39214cae5deacb2517bf9bcb24005f8b 47 PRINTS PR00674 Light harvesting protein B chain signature 28 45 1.3E-13 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS03140 39214cae5deacb2517bf9bcb24005f8b 47 PRINTS PR00674 Light harvesting protein B chain signature 8 28 1.3E-13 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS03140 39214cae5deacb2517bf9bcb24005f8b 47 SUPERFAMILY SSF56918 3 46 4.71E-15 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS03140 39214cae5deacb2517bf9bcb24005f8b 47 PIRSF PIRSF002900 1 47 8.6E-18 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS09960 d6d048ecfd358c54e38ee06dea7252cc 343 Pfam PF06463 Molybdenum Cofactor Synthesis C 198 322 6.8E-37 T 23-04-2016 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 RPE_RS09960 d6d048ecfd358c54e38ee06dea7252cc 343 SMART SM00729 24 228 3.5E-5 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RPE_RS09960 d6d048ecfd358c54e38ee06dea7252cc 343 Gene3D G3DSA:3.20.20.70 15 313 2.2E-70 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS09960 d6d048ecfd358c54e38ee06dea7252cc 343 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 15 343 2.9E-109 T 23-04-2016 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 RPE_RS09960 d6d048ecfd358c54e38ee06dea7252cc 343 Hamap MF_01225_B Cyclic pyranopterin monophosphate synthase [moaA]. 15 343 38.975 T 23-04-2016 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 RPE_RS09960 d6d048ecfd358c54e38ee06dea7252cc 343 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 30 41 - T 23-04-2016 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 RPE_RS09960 d6d048ecfd358c54e38ee06dea7252cc 343 Pfam PF04055 Radical SAM superfamily 28 190 1.2E-27 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RPE_RS09960 d6d048ecfd358c54e38ee06dea7252cc 343 SUPERFAMILY SSF102114 16 288 3.01E-71 T 23-04-2016 RPE_RS09960 d6d048ecfd358c54e38ee06dea7252cc 343 Pfam PF13353 4Fe-4S single cluster domain 31 124 3.5E-11 T 23-04-2016 RPE_RS09960 d6d048ecfd358c54e38ee06dea7252cc 343 PANTHER PTHR22960 15 294 9.7E-113 T 23-04-2016 RPE_RS10570 186e8f02397678571f29e542eb81dfd2 383 Pfam PF01098 Cell cycle protein 20 365 8.9E-76 T 23-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 RPE_RS10570 186e8f02397678571f29e542eb81dfd2 383 PANTHER PTHR30474:SF2 1 382 5.1E-127 T 23-04-2016 RPE_RS10570 186e8f02397678571f29e542eb81dfd2 383 PANTHER PTHR30474 1 382 5.1E-127 T 23-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 RPE_RS10570 186e8f02397678571f29e542eb81dfd2 383 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 18 364 7.4E-105 T 23-04-2016 IPR013437 Cell division protein FtsW GO:0009252|GO:0016021|GO:0051301 RPE_RS07170 34d5761dc9ba8830b91f442a3d85ad8d 182 Pfam PF12802 MarR family 53 111 2.8E-10 T 23-04-2016 RPE_RS07170 34d5761dc9ba8830b91f442a3d85ad8d 182 Gene3D G3DSA:1.10.10.10 25 160 4.8E-32 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS07170 34d5761dc9ba8830b91f442a3d85ad8d 182 SMART SM00347 47 147 1.9E-15 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RPE_RS07170 34d5761dc9ba8830b91f442a3d85ad8d 182 PANTHER PTHR33164 1 171 9.7E-14 T 23-04-2016 RPE_RS07170 34d5761dc9ba8830b91f442a3d85ad8d 182 SUPERFAMILY SSF46785 27 162 1.77E-28 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS22440 708693a6237f938577af752524d4d032 568 Pfam PF00027 Cyclic nucleotide-binding domain 44 128 1.3E-9 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RPE_RS22440 708693a6237f938577af752524d4d032 568 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 345 363 2.4E-25 T 23-04-2016 RPE_RS22440 708693a6237f938577af752524d4d032 568 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 388 406 2.4E-25 T 23-04-2016 RPE_RS22440 708693a6237f938577af752524d4d032 568 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 476 492 2.4E-25 T 23-04-2016 RPE_RS22440 708693a6237f938577af752524d4d032 568 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 513 535 2.4E-25 T 23-04-2016 RPE_RS22440 708693a6237f938577af752524d4d032 568 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 244 263 2.4E-25 T 23-04-2016 RPE_RS22440 708693a6237f938577af752524d4d032 568 SUPERFAMILY SSF51905 236 560 1.07E-47 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS22440 708693a6237f938577af752524d4d032 568 SMART SM00100 25 143 2.0E-9 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RPE_RS22440 708693a6237f938577af752524d4d032 568 Gene3D G3DSA:2.60.120.10 26 144 3.3E-17 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS22440 708693a6237f938577af752524d4d032 568 SUPERFAMILY SSF51206 25 150 2.23E-21 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like RPE_RS22440 708693a6237f938577af752524d4d032 568 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 242 549 5.0E-33 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS22440 708693a6237f938577af752524d4d032 568 PANTHER PTHR22912:SF138 228 559 2.4E-159 T 23-04-2016 RPE_RS22440 708693a6237f938577af752524d4d032 568 Gene3D G3DSA:3.50.50.60 242 351 1.1E-26 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS22440 708693a6237f938577af752524d4d032 568 Gene3D G3DSA:3.50.50.60 352 558 1.2E-32 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS22440 708693a6237f938577af752524d4d032 568 PANTHER PTHR22912 228 559 2.4E-159 T 23-04-2016 RPE_RS22440 708693a6237f938577af752524d4d032 568 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 523 541 4.2E-35 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RPE_RS22440 708693a6237f938577af752524d4d032 568 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 243 265 4.2E-35 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RPE_RS22440 708693a6237f938577af752524d4d032 568 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 276 291 4.2E-35 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RPE_RS22440 708693a6237f938577af752524d4d032 568 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 346 354 4.2E-35 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RPE_RS22440 708693a6237f938577af752524d4d032 568 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 438 454 4.2E-35 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RPE_RS22440 708693a6237f938577af752524d4d032 568 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 384 408 4.2E-35 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RPE_RS14160 80d0c427aaf2d49ee07ebb5579b006ab 453 SMART SM00304 176 228 7.4E-6 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS14160 80d0c427aaf2d49ee07ebb5579b006ab 453 Pfam PF00672 HAMP domain 160 221 2.1E-7 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS14160 80d0c427aaf2d49ee07ebb5579b006ab 453 SUPERFAMILY SSF55874 316 449 1.23E-15 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS14160 80d0c427aaf2d49ee07ebb5579b006ab 453 Pfam PF16448 LapD/MoxY periplasmic domain 100 150 5.8E-6 T 23-04-2016 IPR032244 LapD/MoxY, periplasmic domain RPE_RS14160 80d0c427aaf2d49ee07ebb5579b006ab 453 Gene3D G3DSA:3.30.565.10 317 450 1.2E-8 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS14160 80d0c427aaf2d49ee07ebb5579b006ab 453 PANTHER PTHR24421:SF1 239 450 1.4E-32 T 23-04-2016 RPE_RS14160 80d0c427aaf2d49ee07ebb5579b006ab 453 PANTHER PTHR24421:SF1 5 10 1.4E-32 T 23-04-2016 RPE_RS14160 80d0c427aaf2d49ee07ebb5579b006ab 453 Pfam PF07730 Histidine kinase 244 314 1.9E-11 T 23-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RPE_RS14160 80d0c427aaf2d49ee07ebb5579b006ab 453 SMART SM00387 353 451 6.2E-7 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS14160 80d0c427aaf2d49ee07ebb5579b006ab 453 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 356 434 4.7E-7 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS14160 80d0c427aaf2d49ee07ebb5579b006ab 453 PANTHER PTHR24421 239 450 1.4E-32 T 23-04-2016 RPE_RS14160 80d0c427aaf2d49ee07ebb5579b006ab 453 PANTHER PTHR24421 5 10 1.4E-32 T 23-04-2016 RPE_RS06415 97787867a9503111b0f84bf64df5e032 82 Gene3D G3DSA:1.20.1250.20 10 72 6.0E-4 T 23-04-2016 RPE_RS22015 7786fe4c851bf0716a703cb15ede51d7 1007 Gene3D G3DSA:3.30.470.20 362 471 1.1E-37 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RPE_RS22015 7786fe4c851bf0716a703cb15ede51d7 1007 PANTHER PTHR22931:SF9 110 1007 0.0 T 23-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RPE_RS22015 7786fe4c851bf0716a703cb15ede51d7 1007 Gene3D G3DSA:3.50.30.10 529 634 4.7E-41 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RPE_RS22015 7786fe4c851bf0716a703cb15ede51d7 1007 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 889 907 - T 23-04-2016 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 RPE_RS22015 7786fe4c851bf0716a703cb15ede51d7 1007 PANTHER PTHR22931 110 1007 0.0 T 23-04-2016 RPE_RS22015 7786fe4c851bf0716a703cb15ede51d7 1007 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 578 589 - T 23-04-2016 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 RPE_RS22015 7786fe4c851bf0716a703cb15ede51d7 1007 SUPERFAMILY SSF52009 515 640 5.76E-38 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RPE_RS22015 7786fe4c851bf0716a703cb15ede51d7 1007 SUPERFAMILY SSF51621 639 999 3.77E-130 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RPE_RS22015 7786fe4c851bf0716a703cb15ede51d7 1007 SUPERFAMILY SSF56059 118 506 4.12E-145 T 23-04-2016 RPE_RS22015 7786fe4c851bf0716a703cb15ede51d7 1007 PIRSF PIRSF000853 116 1007 0.0 T 23-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RPE_RS22015 7786fe4c851bf0716a703cb15ede51d7 1007 TIGRFAM TIGR01828 pyru_phos_dikin: pyruvate, phosphate dikinase 118 999 0.0 T 23-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RPE_RS22015 7786fe4c851bf0716a703cb15ede51d7 1007 Gene3D G3DSA:3.30.1490.20 118 229 8.8E-57 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RPE_RS22015 7786fe4c851bf0716a703cb15ede51d7 1007 Gene3D G3DSA:3.30.1490.20 318 361 8.8E-57 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RPE_RS22015 7786fe4c851bf0716a703cb15ede51d7 1007 Gene3D G3DSA:3.20.20.60 660 1000 6.5E-138 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RPE_RS22015 7786fe4c851bf0716a703cb15ede51d7 1007 Pfam PF00391 PEP-utilising enzyme, mobile domain 551 631 4.8E-28 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RPE_RS22015 7786fe4c851bf0716a703cb15ede51d7 1007 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 645 997 3.3E-88 T 23-04-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 RPE_RS22015 7786fe4c851bf0716a703cb15ede51d7 1007 Gene3D G3DSA:1.20.80.30 230 316 3.3E-33 T 23-04-2016 RPE_RS22015 7786fe4c851bf0716a703cb15ede51d7 1007 Gene3D G3DSA:1.10.189.10 472 528 2.1E-30 T 23-04-2016 RPE_RS22015 7786fe4c851bf0716a703cb15ede51d7 1007 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 136 485 1.8E-60 T 23-04-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 RPE_RS17110 a6fcb1b6d0cf32f128fc0a790516a0f4 146 Pfam PF07370 Protein of unknown function (DUF1489) 5 146 9.1E-58 T 23-04-2016 IPR008320 Uncharacterised conserved protein UCP032025 RPE_RS17110 a6fcb1b6d0cf32f128fc0a790516a0f4 146 PIRSF PIRSF032025 1 146 2.0E-68 T 23-04-2016 IPR008320 Uncharacterised conserved protein UCP032025 RPE_RS21175 6c6b08dbf5528427d4a9209d48de8b76 645 PANTHER PTHR11624:SF2 31 639 4.5E-102 T 23-04-2016 RPE_RS21175 6c6b08dbf5528427d4a9209d48de8b76 645 Pfam PF02779 Transketolase, pyrimidine binding domain 335 487 2.2E-22 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RPE_RS21175 6c6b08dbf5528427d4a9209d48de8b76 645 Gene3D G3DSA:3.40.50.970 331 487 1.1E-35 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS21175 6c6b08dbf5528427d4a9209d48de8b76 645 Gene3D G3DSA:3.40.50.920 507 635 3.2E-21 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RPE_RS21175 6c6b08dbf5528427d4a9209d48de8b76 645 Pfam PF02780 Transketolase, C-terminal domain 507 630 9.6E-19 T 23-04-2016 IPR033248 Transketolase, C-terminal domain RPE_RS21175 6c6b08dbf5528427d4a9209d48de8b76 645 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 38 268 1.4E-26 T 23-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RPE_RS21175 6c6b08dbf5528427d4a9209d48de8b76 645 SUPERFAMILY SSF52518 33 270 3.75E-69 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS21175 6c6b08dbf5528427d4a9209d48de8b76 645 PANTHER PTHR11624 31 639 4.5E-102 T 23-04-2016 IPR033247 Transketolase family RPE_RS21175 6c6b08dbf5528427d4a9209d48de8b76 645 SMART SM00861 330 494 6.2E-32 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RPE_RS21175 6c6b08dbf5528427d4a9209d48de8b76 645 Gene3D G3DSA:3.40.50.970 34 302 7.8E-77 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS21175 6c6b08dbf5528427d4a9209d48de8b76 645 SUPERFAMILY SSF52922 506 638 1.03E-19 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RPE_RS21175 6c6b08dbf5528427d4a9209d48de8b76 645 SUPERFAMILY SSF52518 321 487 4.87E-39 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS04535 1052af095c73c3cf2fd8152a486a80ba 289 SUPERFAMILY SSF52129 55 276 1.94E-42 T 23-04-2016 IPR029030 Caspase-like domain RPE_RS04535 1052af095c73c3cf2fd8152a486a80ba 289 Pfam PF00656 Caspase domain 57 275 2.6E-30 T 23-04-2016 RPE_RS04535 1052af095c73c3cf2fd8152a486a80ba 289 PANTHER PTHR22576 50 270 4.5E-67 T 23-04-2016 RPE_RS04535 1052af095c73c3cf2fd8152a486a80ba 289 Gene3D G3DSA:3.40.50.1460 55 189 1.3E-11 T 23-04-2016 IPR029030 Caspase-like domain RPE_RS17935 fb34e1b1b10fd70f9535a6dd5028edb9 232 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 1.3E-95 T 23-04-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 RPE_RS17935 fb34e1b1b10fd70f9535a6dd5028edb9 232 SUPERFAMILY SSF54821 108 206 8.11E-41 T 23-04-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 RPE_RS17935 fb34e1b1b10fd70f9535a6dd5028edb9 232 Pfam PF07650 KH domain 38 111 4.0E-18 T 23-04-2016 IPR004044 K Homology domain, type 2 GO:0003723 RPE_RS17935 fb34e1b1b10fd70f9535a6dd5028edb9 232 SUPERFAMILY SSF54814 2 106 4.19E-38 T 23-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 RPE_RS17935 fb34e1b1b10fd70f9535a6dd5028edb9 232 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 38.991 T 23-04-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 RPE_RS17935 fb34e1b1b10fd70f9535a6dd5028edb9 232 PANTHER PTHR11760:SF19 2 209 3.5E-132 T 23-04-2016 RPE_RS17935 fb34e1b1b10fd70f9535a6dd5028edb9 232 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 3.3E-39 T 23-04-2016 RPE_RS17935 fb34e1b1b10fd70f9535a6dd5028edb9 232 PANTHER PTHR11760 2 209 3.5E-132 T 23-04-2016 RPE_RS17935 fb34e1b1b10fd70f9535a6dd5028edb9 232 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 23-04-2016 IPR018280 Ribosomal protein S3, conserved site RPE_RS17935 fb34e1b1b10fd70f9535a6dd5028edb9 232 SMART SM00322 60 125 9.4E-10 T 23-04-2016 IPR004087 K Homology domain GO:0003676 RPE_RS17935 fb34e1b1b10fd70f9535a6dd5028edb9 232 Gene3D G3DSA:3.30.300.20 17 107 3.5E-33 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta RPE_RS17935 fb34e1b1b10fd70f9535a6dd5028edb9 232 Gene3D G3DSA:3.30.1140.32 108 207 8.0E-47 T 23-04-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 RPE_RS11715 bf1e507f26e602f31bd624b15b79a623 834 PANTHER PTHR10799:SF657 367 676 6.7E-111 T 23-04-2016 RPE_RS11715 bf1e507f26e602f31bd624b15b79a623 834 PANTHER PTHR10799 367 676 6.7E-111 T 23-04-2016 RPE_RS11715 bf1e507f26e602f31bd624b15b79a623 834 SUPERFAMILY SSF55073 411 568 1.02E-45 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS11715 bf1e507f26e602f31bd624b15b79a623 834 SMART SM00052 576 818 7.3E-117 T 23-04-2016 IPR001633 EAL domain RPE_RS11715 bf1e507f26e602f31bd624b15b79a623 834 Pfam PF00563 EAL domain 583 812 1.8E-77 T 23-04-2016 IPR001633 EAL domain RPE_RS11715 bf1e507f26e602f31bd624b15b79a623 834 SMART SM00091 283 350 1.5E-10 T 23-04-2016 IPR000014 PAS domain RPE_RS11715 bf1e507f26e602f31bd624b15b79a623 834 SMART SM00091 166 241 110.0 T 23-04-2016 IPR000014 PAS domain RPE_RS11715 bf1e507f26e602f31bd624b15b79a623 834 SUPERFAMILY SSF55785 277 393 1.2E-17 T 23-04-2016 IPR000014 PAS domain RPE_RS11715 bf1e507f26e602f31bd624b15b79a623 834 Gene3D G3DSA:3.30.450.20 278 393 1.5E-17 T 23-04-2016 RPE_RS11715 bf1e507f26e602f31bd624b15b79a623 834 Gene3D G3DSA:3.30.70.270 407 574 2.6E-54 T 23-04-2016 RPE_RS11715 bf1e507f26e602f31bd624b15b79a623 834 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 280 401 1.4E-16 T 23-04-2016 IPR000014 PAS domain RPE_RS11715 bf1e507f26e602f31bd624b15b79a623 834 Pfam PF00990 Diguanylate cyclase, GGDEF domain 406 560 1.0E-44 T 23-04-2016 IPR000160 GGDEF domain RPE_RS11715 bf1e507f26e602f31bd624b15b79a623 834 Pfam PF13188 PAS domain 285 350 1.1E-7 T 23-04-2016 IPR000014 PAS domain RPE_RS11715 bf1e507f26e602f31bd624b15b79a623 834 Pfam PF13188 PAS domain 168 216 0.017 T 23-04-2016 IPR000014 PAS domain RPE_RS11715 bf1e507f26e602f31bd624b15b79a623 834 SUPERFAMILY SSF141868 583 825 7.59E-93 T 23-04-2016 IPR001633 EAL domain RPE_RS11715 bf1e507f26e602f31bd624b15b79a623 834 Gene3D G3DSA:3.30.450.20 167 276 1.8E-4 T 23-04-2016 RPE_RS11715 bf1e507f26e602f31bd624b15b79a623 834 Gene3D G3DSA:3.20.20.450 580 824 1.0E-99 T 23-04-2016 IPR001633 EAL domain RPE_RS11715 bf1e507f26e602f31bd624b15b79a623 834 SMART SM00267 395 566 1.6E-60 T 23-04-2016 IPR000160 GGDEF domain RPE_RS11715 bf1e507f26e602f31bd624b15b79a623 834 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 403 561 2.6E-39 T 23-04-2016 IPR000160 GGDEF domain RPE_RS18390 ede0b8fb4845abae74301a8c975d183d 283 Gene3D G3DSA:3.40.50.720 6 254 1.2E-65 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS18390 ede0b8fb4845abae74301a8c975d183d 283 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 7.8E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18390 ede0b8fb4845abae74301a8c975d183d 283 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 7.8E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18390 ede0b8fb4845abae74301a8c975d183d 283 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 7.8E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18390 ede0b8fb4845abae74301a8c975d183d 283 SUPERFAMILY SSF51735 1 271 2.37E-65 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS18390 ede0b8fb4845abae74301a8c975d183d 283 PANTHER PTHR24322 11 138 7.3E-47 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18390 ede0b8fb4845abae74301a8c975d183d 283 PANTHER PTHR24322 154 185 7.3E-47 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18390 ede0b8fb4845abae74301a8c975d183d 283 Pfam PF00106 short chain dehydrogenase 7 196 1.6E-51 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18390 ede0b8fb4845abae74301a8c975d183d 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 2.2E-25 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18390 ede0b8fb4845abae74301a8c975d183d 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 2.2E-25 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18390 ede0b8fb4845abae74301a8c975d183d 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.2E-25 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18390 ede0b8fb4845abae74301a8c975d183d 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 2.2E-25 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18390 ede0b8fb4845abae74301a8c975d183d 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 2.2E-25 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18390 ede0b8fb4845abae74301a8c975d183d 283 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RPE_RS18390 ede0b8fb4845abae74301a8c975d183d 283 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 188 3.0E-6 T 23-04-2016 RPE_RS06470 c340a4c4f658222c04ac01525754ee7d 549 Gene3D G3DSA:3.40.120.10 313 449 9.0E-34 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS06470 c340a4c4f658222c04ac01525754ee7d 549 Gene3D G3DSA:3.40.120.10 32 227 4.4E-60 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS06470 c340a4c4f658222c04ac01525754ee7d 549 PANTHER PTHR22573:SF52 20 547 1.2E-259 T 23-04-2016 RPE_RS06470 c340a4c4f658222c04ac01525754ee7d 549 Gene3D G3DSA:3.30.310.50 470 547 5.2E-26 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS06470 c340a4c4f658222c04ac01525754ee7d 549 PANTHER PTHR22573 20 547 1.2E-259 T 23-04-2016 RPE_RS06470 c340a4c4f658222c04ac01525754ee7d 549 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 42 183 1.7E-34 T 23-04-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS06470 c340a4c4f658222c04ac01525754ee7d 549 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 213 316 1.0E-14 T 23-04-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS06470 c340a4c4f658222c04ac01525754ee7d 549 Gene3D G3DSA:3.40.120.10 228 312 2.5E-41 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS06470 c340a4c4f658222c04ac01525754ee7d 549 SUPERFAMILY SSF55957 437 548 2.49E-20 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS06470 c340a4c4f658222c04ac01525754ee7d 549 SUPERFAMILY SSF53738 28 238 6.48E-51 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS06470 c340a4c4f658222c04ac01525754ee7d 549 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 483 542 4.2E-9 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS06470 c340a4c4f658222c04ac01525754ee7d 549 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 143 152 - T 23-04-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS06470 c340a4c4f658222c04ac01525754ee7d 549 TIGRFAM TIGR01132 pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific 5 547 1.8E-269 T 23-04-2016 IPR005852 Phosphoglucomutase, alpha-D-glucose specific GO:0004614|GO:0005975 KEGG: 00010+5.4.2.2|KEGG: 00030+5.4.2.2|KEGG: 00052+5.4.2.2|KEGG: 00230+5.4.2.2|KEGG: 00500+5.4.2.2|KEGG: 00520+5.4.2.2|KEGG: 00521+5.4.2.2|MetaCyc: PWY-2723|MetaCyc: PWY-3801|MetaCyc: PWY-5384|MetaCyc: PWY-5661|MetaCyc: PWY-5940|MetaCyc: PWY-5941|MetaCyc: PWY-622|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|MetaCyc: PWY-7343 RPE_RS06470 c340a4c4f658222c04ac01525754ee7d 549 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 324 442 5.3E-27 T 23-04-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS06470 c340a4c4f658222c04ac01525754ee7d 549 SUPERFAMILY SSF53738 309 451 5.49E-33 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS06470 c340a4c4f658222c04ac01525754ee7d 549 SUPERFAMILY SSF53738 212 319 7.06E-9 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS04730 12af62007036ba0950ef2b2444782c77 312 PANTHER PTHR33608 8 303 5.4E-95 T 23-04-2016 RPE_RS04730 12af62007036ba0950ef2b2444782c77 312 PANTHER PTHR33608:SF2 8 303 5.4E-95 T 23-04-2016 RPE_RS04730 12af62007036ba0950ef2b2444782c77 312 Pfam PF01882 Protein of unknown function DUF58 56 143 1.3E-17 T 23-04-2016 IPR002881 Domain of unknown function DUF58 RPE_RS22975 0d16ad8c0517db0f65a5058972ed25c3 251 PANTHER PTHR24220:SF366 13 250 2.0E-134 T 23-04-2016 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD RPE_RS22975 0d16ad8c0517db0f65a5058972ed25c3 251 TIGRFAM TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD 11 251 1.1E-114 T 23-04-2016 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD RPE_RS22975 0d16ad8c0517db0f65a5058972ed25c3 251 PANTHER PTHR24220 13 250 2.0E-134 T 23-04-2016 RPE_RS22975 0d16ad8c0517db0f65a5058972ed25c3 251 Pfam PF00005 ABC transporter 28 181 1.3E-29 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS22975 0d16ad8c0517db0f65a5058972ed25c3 251 Gene3D G3DSA:3.40.50.300 11 248 3.3E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS22975 0d16ad8c0517db0f65a5058972ed25c3 251 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 228 250 7.1E-9 T 23-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RPE_RS22975 0d16ad8c0517db0f65a5058972ed25c3 251 SUPERFAMILY SSF52540 10 249 5.65E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS19925 4b62b7d8eeb2d7d25a55a868b666930e 438 SUPERFAMILY SSF51905 167 294 9.84E-14 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS19925 4b62b7d8eeb2d7d25a55a868b666930e 438 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 41 144 2.2E-10 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS19925 4b62b7d8eeb2d7d25a55a868b666930e 438 Gene3D G3DSA:3.50.50.60 39 153 4.7E-42 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS19925 4b62b7d8eeb2d7d25a55a868b666930e 438 Gene3D G3DSA:3.50.50.60 295 369 4.7E-42 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS19925 4b62b7d8eeb2d7d25a55a868b666930e 438 SUPERFAMILY SSF51905 41 145 5.5E-22 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS19925 4b62b7d8eeb2d7d25a55a868b666930e 438 SUPERFAMILY SSF51905 289 363 5.5E-22 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS19925 4b62b7d8eeb2d7d25a55a868b666930e 438 PANTHER PTHR10632 12 436 6.6E-114 T 23-04-2016 RPE_RS19925 4b62b7d8eeb2d7d25a55a868b666930e 438 PANTHER PTHR10632:SF2 12 436 6.6E-114 T 23-04-2016 RPE_RS13290 0a40e47ab42252a40af80644ed97910f 201 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 8 158 1.8E-18 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS13290 0a40e47ab42252a40af80644ed97910f 201 Pfam PF08281 Sigma-70, region 4 109 157 9.1E-10 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS13290 0a40e47ab42252a40af80644ed97910f 201 PANTHER PTHR30173 8 168 3.1E-35 T 23-04-2016 RPE_RS13290 0a40e47ab42252a40af80644ed97910f 201 SUPERFAMILY SSF88659 92 168 5.01E-12 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS13290 0a40e47ab42252a40af80644ed97910f 201 PANTHER PTHR30173:SF30 8 168 3.1E-35 T 23-04-2016 RPE_RS13290 0a40e47ab42252a40af80644ed97910f 201 Pfam PF04542 Sigma-70 region 2 19 79 8.6E-7 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS13290 0a40e47ab42252a40af80644ed97910f 201 Gene3D G3DSA:1.10.1740.10 8 98 6.7E-10 T 23-04-2016 RPE_RS13290 0a40e47ab42252a40af80644ed97910f 201 Gene3D G3DSA:1.10.10.10 104 165 1.9E-7 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS13290 0a40e47ab42252a40af80644ed97910f 201 SUPERFAMILY SSF88946 8 97 7.06E-11 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS07210 775b79b0e9eb994a849af597020b0674 255 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 19 251 6.9E-69 T 23-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase RPE_RS07210 775b79b0e9eb994a849af597020b0674 255 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 30 240 4.7E-49 T 23-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase RPE_RS07210 775b79b0e9eb994a849af597020b0674 255 Gene3D G3DSA:3.60.140.10 6 252 2.6E-85 T 23-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase RPE_RS07210 775b79b0e9eb994a849af597020b0674 255 SUPERFAMILY SSF64438 6 252 7.69E-82 T 23-04-2016 IPR011324 Cytotoxic necrotizing factor-like, catalytic RPE_RS07210 775b79b0e9eb994a849af597020b0674 255 PANTHER PTHR30616 13 255 6.1E-81 T 23-04-2016 RPE_RS15815 5e758a935cc74e93c67460a5884159a1 68 Gene3D G3DSA:2.10.70.10 30 68 3.3E-19 T 23-04-2016 RPE_RS15815 5e758a935cc74e93c67460a5884159a1 68 Pfam PF10636 Hemin uptake protein hemP 32 68 4.8E-18 T 23-04-2016 IPR019600 Hemin uptake protein HemP RPE_RS07575 82f962ef065c2dfc9029be235b7f637a 186 PANTHER PTHR23133 1 175 1.2E-31 T 23-04-2016 RPE_RS07575 82f962ef065c2dfc9029be235b7f637a 186 Pfam PF13242 HAD-hyrolase-like 101 145 9.7E-12 T 23-04-2016 RPE_RS07575 82f962ef065c2dfc9029be235b7f637a 186 PANTHER PTHR23133:SF3 1 175 1.2E-31 T 23-04-2016 RPE_RS07575 82f962ef065c2dfc9029be235b7f637a 186 Gene3D G3DSA:3.40.50.1000 1 173 8.3E-45 T 23-04-2016 IPR023214 HAD-like domain RPE_RS07575 82f962ef065c2dfc9029be235b7f637a 186 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 5 144 2.8E-35 T 23-04-2016 IPR006543 Histidinol-phosphate phosphatase GO:0016791 RPE_RS07575 82f962ef065c2dfc9029be235b7f637a 186 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 4 145 2.6E-25 T 23-04-2016 IPR006549 HAD-superfamily hydrolase,subfamily IIIA RPE_RS07575 82f962ef065c2dfc9029be235b7f637a 186 PIRSF PIRSF004682 1 181 2.0E-42 T 23-04-2016 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 RPE_RS07575 82f962ef065c2dfc9029be235b7f637a 186 SUPERFAMILY SSF56784 1 174 1.0E-37 T 23-04-2016 IPR023214 HAD-like domain RPE_RS24165 337d0707c798bef80a1d282bf7cb0b93 491 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 57 421 1.1E-62 T 23-04-2016 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 RPE_RS24165 337d0707c798bef80a1d282bf7cb0b93 491 Gene3D G3DSA:3.40.640.10 102 374 3.7E-87 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS24165 337d0707c798bef80a1d282bf7cb0b93 491 Gene3D G3DSA:1.20.1340.10 22 99 7.6E-16 T 23-04-2016 RPE_RS24165 337d0707c798bef80a1d282bf7cb0b93 491 PANTHER PTHR11999 15 480 9.8E-141 T 23-04-2016 RPE_RS24165 337d0707c798bef80a1d282bf7cb0b93 491 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 130 149 1.0E-20 T 23-04-2016 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 RPE_RS24165 337d0707c798bef80a1d282bf7cb0b93 491 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 360 375 1.0E-20 T 23-04-2016 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 RPE_RS24165 337d0707c798bef80a1d282bf7cb0b93 491 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 92 111 1.0E-20 T 23-04-2016 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 RPE_RS24165 337d0707c798bef80a1d282bf7cb0b93 491 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 403 422 1.0E-20 T 23-04-2016 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 RPE_RS24165 337d0707c798bef80a1d282bf7cb0b93 491 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 26 45 1.0E-20 T 23-04-2016 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 RPE_RS24165 337d0707c798bef80a1d282bf7cb0b93 491 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 66 85 1.0E-20 T 23-04-2016 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 RPE_RS24165 337d0707c798bef80a1d282bf7cb0b93 491 ProSitePatterns PS00392 DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 303 324 - T 23-04-2016 IPR021115 Pyridoxal-phosphate binding site GO:0016831 RPE_RS24165 337d0707c798bef80a1d282bf7cb0b93 491 SUPERFAMILY SSF53383 22 484 1.77E-120 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS24165 337d0707c798bef80a1d282bf7cb0b93 491 PANTHER PTHR11999:SF70 15 480 9.8E-141 T 23-04-2016 RPE_RS24165 337d0707c798bef80a1d282bf7cb0b93 491 Gene3D G3DSA:3.90.1150.10 375 484 9.2E-37 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS01000 b3af3165dc693d2d5bd7073f457d7621 538 SUPERFAMILY SSF50249 137 204 7.17E-20 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS01000 b3af3165dc693d2d5bd7073f457d7621 538 SUPERFAMILY SSF69705 9 131 1.06E-36 T 23-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 RPE_RS01000 b3af3165dc693d2d5bd7073f457d7621 538 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 8 428 30.481 T 23-04-2016 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 RPE_RS01000 b3af3165dc693d2d5bd7073f457d7621 538 Gene3D G3DSA:3.30.300.20 284 353 9.4E-31 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta RPE_RS01000 b3af3165dc693d2d5bd7073f457d7621 538 SUPERFAMILY SSF47794 437 486 7.59E-5 T 23-04-2016 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 RPE_RS01000 b3af3165dc693d2d5bd7073f457d7621 538 Pfam PF08529 NusA N-terminal domain 10 130 5.9E-32 T 23-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 RPE_RS01000 b3af3165dc693d2d5bd7073f457d7621 538 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 372 421 9.7E-19 T 23-04-2016 IPR010214 Transcription termination factor NusA, C-terminal duplication RPE_RS01000 b3af3165dc693d2d5bd7073f457d7621 538 SUPERFAMILY SSF47794 361 421 2.67E-15 T 23-04-2016 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 RPE_RS01000 b3af3165dc693d2d5bd7073f457d7621 538 Gene3D G3DSA:3.30.1480.10 9 131 3.4E-44 T 23-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 RPE_RS01000 b3af3165dc693d2d5bd7073f457d7621 538 Gene3D G3DSA:2.40.50.140 134 203 1.4E-28 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS01000 b3af3165dc693d2d5bd7073f457d7621 538 PANTHER PTHR22648 7 455 2.3E-175 T 23-04-2016 RPE_RS01000 b3af3165dc693d2d5bd7073f457d7621 538 PANTHER PTHR22648:SF0 7 455 2.3E-175 T 23-04-2016 RPE_RS01000 b3af3165dc693d2d5bd7073f457d7621 538 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 10 349 5.9E-130 T 23-04-2016 IPR010213 Transcription termination factor NusA GO:0003723 RPE_RS01000 b3af3165dc693d2d5bd7073f457d7621 538 SUPERFAMILY SSF54814 205 282 3.4E-31 T 23-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 RPE_RS01000 b3af3165dc693d2d5bd7073f457d7621 538 SUPERFAMILY SSF54814 284 350 1.11E-14 T 23-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 RPE_RS01000 b3af3165dc693d2d5bd7073f457d7621 538 Pfam PF13184 NusA-like KH domain 235 302 1.6E-28 T 23-04-2016 IPR025249 KH domain, NusA-like GO:0003723 RPE_RS01000 b3af3165dc693d2d5bd7073f457d7621 538 SMART SM00316 139 205 3.7E-10 T 23-04-2016 IPR022967 RNA-binding domain, S1 RPE_RS01000 b3af3165dc693d2d5bd7073f457d7621 538 Pfam PF14520 Helix-hairpin-helix domain 379 418 7.2E-4 T 23-04-2016 RPE_RS01000 b3af3165dc693d2d5bd7073f457d7621 538 Pfam PF14520 Helix-hairpin-helix domain 439 474 0.0021 T 23-04-2016 RPE_RS01000 b3af3165dc693d2d5bd7073f457d7621 538 Gene3D G3DSA:3.30.300.20 204 282 3.1E-37 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta RPE_RS01000 b3af3165dc693d2d5bd7073f457d7621 538 SMART SM00322 306 384 6.9E-5 T 23-04-2016 IPR004087 K Homology domain GO:0003676 RPE_RS01000 b3af3165dc693d2d5bd7073f457d7621 538 SMART SM00322 235 298 9.6 T 23-04-2016 IPR004087 K Homology domain GO:0003676 RPE_RS01000 b3af3165dc693d2d5bd7073f457d7621 538 Pfam PF00575 S1 RNA binding domain 137 199 3.9E-7 T 23-04-2016 IPR003029 S1 domain GO:0003676 RPE_RS01000 b3af3165dc693d2d5bd7073f457d7621 538 Gene3D G3DSA:1.10.150.20 363 425 1.2E-18 T 23-04-2016 RPE_RS01000 b3af3165dc693d2d5bd7073f457d7621 538 Gene3D G3DSA:1.10.150.20 438 512 5.3E-15 T 23-04-2016 RPE_RS06205 7233a4af8170bac213d01f976c579db7 1055 SUPERFAMILY SSF82866 805 1027 1.83E-42 T 23-04-2016 RPE_RS06205 7233a4af8170bac213d01f976c579db7 1055 Gene3D G3DSA:3.30.70.1430 39 140 7.6E-29 T 23-04-2016 RPE_RS06205 7233a4af8170bac213d01f976c579db7 1055 PRINTS PR00702 Acriflavin resistance protein family signature 37 55 3.4E-89 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS06205 7233a4af8170bac213d01f976c579db7 1055 PRINTS PR00702 Acriflavin resistance protein family signature 338 361 3.4E-89 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS06205 7233a4af8170bac213d01f976c579db7 1055 PRINTS PR00702 Acriflavin resistance protein family signature 551 568 3.4E-89 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS06205 7233a4af8170bac213d01f976c579db7 1055 PRINTS PR00702 Acriflavin resistance protein family signature 620 634 3.4E-89 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS06205 7233a4af8170bac213d01f976c579db7 1055 PRINTS PR00702 Acriflavin resistance protein family signature 365 386 3.4E-89 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS06205 7233a4af8170bac213d01f976c579db7 1055 PRINTS PR00702 Acriflavin resistance protein family signature 473 496 3.4E-89 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS06205 7233a4af8170bac213d01f976c579db7 1055 PRINTS PR00702 Acriflavin resistance protein family signature 448 471 3.4E-89 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS06205 7233a4af8170bac213d01f976c579db7 1055 PRINTS PR00702 Acriflavin resistance protein family signature 9 33 3.4E-89 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS06205 7233a4af8170bac213d01f976c579db7 1055 PRINTS PR00702 Acriflavin resistance protein family signature 393 417 3.4E-89 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS06205 7233a4af8170bac213d01f976c579db7 1055 SUPERFAMILY SSF82714 721 805 9.81E-21 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS06205 7233a4af8170bac213d01f976c579db7 1055 SUPERFAMILY SSF82866 298 501 6.54E-49 T 23-04-2016 RPE_RS06205 7233a4af8170bac213d01f976c579db7 1055 SUPERFAMILY SSF82693 39 133 1.07E-22 T 23-04-2016 RPE_RS06205 7233a4af8170bac213d01f976c579db7 1055 PANTHER PTHR32063 1 1030 0.0 T 23-04-2016 RPE_RS06205 7233a4af8170bac213d01f976c579db7 1055 SUPERFAMILY SSF82714 184 274 9.02E-20 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS06205 7233a4af8170bac213d01f976c579db7 1055 Gene3D G3DSA:3.30.2090.10 721 809 2.6E-21 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS06205 7233a4af8170bac213d01f976c579db7 1055 Gene3D G3DSA:3.30.2090.10 184 276 2.0E-26 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS06205 7233a4af8170bac213d01f976c579db7 1055 PANTHER PTHR32063:SF27 1 1030 0.0 T 23-04-2016 RPE_RS06205 7233a4af8170bac213d01f976c579db7 1055 SUPERFAMILY SSF82693 564 670 2.28E-25 T 23-04-2016 RPE_RS06205 7233a4af8170bac213d01f976c579db7 1055 SUPERFAMILY SSF82693 136 183 2.62E-24 T 23-04-2016 RPE_RS06205 7233a4af8170bac213d01f976c579db7 1055 SUPERFAMILY SSF82693 276 332 2.62E-24 T 23-04-2016 RPE_RS06205 7233a4af8170bac213d01f976c579db7 1055 Gene3D G3DSA:3.30.70.1430 566 669 2.1E-27 T 23-04-2016 RPE_RS06205 7233a4af8170bac213d01f976c579db7 1055 Gene3D G3DSA:1.10.3850.10 281 501 9.6E-60 T 23-04-2016 RPE_RS06205 7233a4af8170bac213d01f976c579db7 1055 Gene3D G3DSA:1.10.3850.10 812 1026 5.5E-53 T 23-04-2016 RPE_RS06205 7233a4af8170bac213d01f976c579db7 1055 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 3 1026 0.0 T 23-04-2016 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 RPE_RS06205 7233a4af8170bac213d01f976c579db7 1055 Pfam PF00873 AcrB/AcrD/AcrF family 3 1025 0.0 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS10345 aeb3b64daee5383978145b7366155515 507 SUPERFAMILY SSF55073 184 340 7.53E-45 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS10345 aeb3b64daee5383978145b7366155515 507 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 363 486 4.1E-21 T 23-04-2016 IPR012827 Haemerythrin, metal-binding domain GO:0046872 RPE_RS10345 aeb3b64daee5383978145b7366155515 507 Gene3D G3DSA:3.30.70.270 182 343 9.8E-50 T 23-04-2016 RPE_RS10345 aeb3b64daee5383978145b7366155515 507 ProSitePatterns PS00550 Hemerythrin family signature. 416 439 - T 23-04-2016 IPR016131 Haemerythrin, iron-binding site GO:0046872 RPE_RS10345 aeb3b64daee5383978145b7366155515 507 Pfam PF00990 Diguanylate cyclase, GGDEF domain 181 338 9.6E-44 T 23-04-2016 IPR000160 GGDEF domain RPE_RS10345 aeb3b64daee5383978145b7366155515 507 PANTHER PTHR10799 212 442 2.1E-28 T 23-04-2016 RPE_RS10345 aeb3b64daee5383978145b7366155515 507 PANTHER PTHR10799 1 39 2.1E-28 T 23-04-2016 RPE_RS10345 aeb3b64daee5383978145b7366155515 507 PANTHER PTHR10799:SF750 212 442 2.1E-28 T 23-04-2016 RPE_RS10345 aeb3b64daee5383978145b7366155515 507 PANTHER PTHR10799:SF750 1 39 2.1E-28 T 23-04-2016 RPE_RS10345 aeb3b64daee5383978145b7366155515 507 Gene3D G3DSA:1.20.120.50 361 484 1.2E-20 T 23-04-2016 IPR012827 Haemerythrin, metal-binding domain GO:0046872 RPE_RS10345 aeb3b64daee5383978145b7366155515 507 SMART SM00267 168 342 1.9E-50 T 23-04-2016 IPR000160 GGDEF domain RPE_RS10345 aeb3b64daee5383978145b7366155515 507 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 176 341 6.1E-50 T 23-04-2016 IPR000160 GGDEF domain RPE_RS10345 aeb3b64daee5383978145b7366155515 507 SUPERFAMILY SSF47188 361 485 1.31E-20 T 23-04-2016 IPR012827 Haemerythrin, metal-binding domain GO:0046872 RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 PRINTS PR00418 DNA topoisomerase II family signature 285 298 3.4E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 PRINTS PR00418 DNA topoisomerase II family signature 435 449 3.4E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 PRINTS PR00418 DNA topoisomerase II family signature 520 537 3.4E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 PRINTS PR00418 DNA topoisomerase II family signature 128 142 3.4E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 PRINTS PR00418 DNA topoisomerase II family signature 50 65 3.4E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 PRINTS PR00418 DNA topoisomerase II family signature 540 552 3.4E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 PRINTS PR00418 DNA topoisomerase II family signature 85 98 3.4E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 PRINTS PR00418 DNA topoisomerase II family signature 746 762 3.4E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 PRINTS PR00418 DNA topoisomerase II family signature 502 518 3.4E-71 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 47 189 1.7E-24 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 PANTHER PTHR10169 1 568 1.3E-293 T 23-04-2016 RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 PANTHER PTHR10169 731 806 1.3E-293 T 23-04-2016 RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 Pfam PF00204 DNA gyrase B 238 405 9.2E-55 T 23-04-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 ProSitePatterns PS00177 DNA topoisomerase II signature. 437 445 - T 23-04-2016 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 SUPERFAMILY SSF56719 409 575 1.23E-84 T 23-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 SUPERFAMILY SSF56719 740 805 1.23E-84 T 23-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 17 813 98.84 T 23-04-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 SUPERFAMILY SSF55874 20 228 4.19E-70 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 742 803 2.9E-26 T 23-04-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 20 809 7.1E-294 T 23-04-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 Gene3D G3DSA:3.30.230.10 237 407 4.9E-70 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 Gene3D G3DSA:3.30.565.10 20 230 2.1E-89 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 SMART SM00433 50 807 1.6E-252 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 Pfam PF01751 Toprim domain 434 535 1.6E-17 T 23-04-2016 IPR006171 Toprim domain RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 SUPERFAMILY SSF54211 238 406 3.79E-57 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 Gene3D G3DSA:3.40.50.670 731 796 1.1E-91 T 23-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 Gene3D G3DSA:3.40.50.670 419 565 1.1E-91 T 23-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 PRINTS PR01159 DNA gyrase subunit B signature 767 779 1.4E-67 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 PRINTS PR01159 DNA gyrase subunit B signature 20 30 1.4E-67 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 PRINTS PR01159 DNA gyrase subunit B signature 196 211 1.4E-67 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 PRINTS PR01159 DNA gyrase subunit B signature 327 343 1.4E-67 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 PRINTS PR01159 DNA gyrase subunit B signature 783 799 1.4E-67 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 PRINTS PR01159 DNA gyrase subunit B signature 389 409 1.4E-67 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 PRINTS PR01159 DNA gyrase subunit B signature 211 224 1.4E-67 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 PRINTS PR01159 DNA gyrase subunit B signature 485 494 1.4E-67 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 PRINTS PR01159 DNA gyrase subunit B signature 237 259 1.4E-67 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 PRINTS PR01159 DNA gyrase subunit B signature 375 389 1.4E-67 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS00025 519f86ccae283bbf61a6a0f0bdd49e3d 813 SMART SM00387 46 191 4.5E-26 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS01720 926088893d8fe3ea4bb8ae0a51c7794b 273 SUPERFAMILY SSF51735 4 128 3.42E-44 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS01720 926088893d8fe3ea4bb8ae0a51c7794b 273 SUPERFAMILY SSF51735 238 269 3.42E-44 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS01720 926088893d8fe3ea4bb8ae0a51c7794b 273 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 4 127 2.7E-32 T 23-04-2016 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RPE_RS01720 926088893d8fe3ea4bb8ae0a51c7794b 273 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 4 267 31.379 T 23-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RPE_RS01720 926088893d8fe3ea4bb8ae0a51c7794b 273 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 4 267 2.0E-78 T 23-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RPE_RS01720 926088893d8fe3ea4bb8ae0a51c7794b 273 PANTHER PTHR20836:SF0 1 270 3.6E-84 T 23-04-2016 RPE_RS01720 926088893d8fe3ea4bb8ae0a51c7794b 273 PIRSF PIRSF000161 2 270 1.5E-76 T 23-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RPE_RS01720 926088893d8fe3ea4bb8ae0a51c7794b 273 PANTHER PTHR20836 1 270 3.6E-84 T 23-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RPE_RS01720 926088893d8fe3ea4bb8ae0a51c7794b 273 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 152 169 - T 23-04-2016 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RPE_RS01720 926088893d8fe3ea4bb8ae0a51c7794b 273 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 130 266 9.2E-43 T 23-04-2016 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RPE_RS01720 926088893d8fe3ea4bb8ae0a51c7794b 273 Gene3D G3DSA:3.40.50.720 2 165 1.2E-50 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS01720 926088893d8fe3ea4bb8ae0a51c7794b 273 SUPERFAMILY SSF55347 129 238 1.5E-35 T 23-04-2016 RPE_RS01315 535c6bd957dbdd7a4fd16d77589b5de5 911 Gene3D G3DSA:3.40.50.2300 784 903 1.1E-27 T 23-04-2016 RPE_RS01315 535c6bd957dbdd7a4fd16d77589b5de5 911 SUPERFAMILY SSF52172 786 903 5.69E-24 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS01315 535c6bd957dbdd7a4fd16d77589b5de5 911 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 644 763 3.0E-17 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS01315 535c6bd957dbdd7a4fd16d77589b5de5 911 SUPERFAMILY SSF55785 387 519 5.9E-10 T 23-04-2016 IPR000014 PAS domain RPE_RS01315 535c6bd957dbdd7a4fd16d77589b5de5 911 Gene3D G3DSA:3.30.450.20 396 519 1.8E-11 T 23-04-2016 RPE_RS01315 535c6bd957dbdd7a4fd16d77589b5de5 911 Gene3D G3DSA:3.30.565.10 590 766 1.2E-37 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS01315 535c6bd957dbdd7a4fd16d77589b5de5 911 Gene3D G3DSA:3.30.450.20 93 221 2.3E-18 T 23-04-2016 RPE_RS01315 535c6bd957dbdd7a4fd16d77589b5de5 911 SMART SM00304 344 395 5.1E-5 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS01315 535c6bd957dbdd7a4fd16d77589b5de5 911 Pfam PF00512 His Kinase A (phospho-acceptor) domain 538 600 5.5E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS01315 535c6bd957dbdd7a4fd16d77589b5de5 911 Pfam PF00072 Response regulator receiver domain 788 898 5.6E-14 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS01315 535c6bd957dbdd7a4fd16d77589b5de5 911 SMART SM00388 536 602 5.0E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS01315 535c6bd957dbdd7a4fd16d77589b5de5 911 SMART SM00387 643 766 1.1E-26 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS01315 535c6bd957dbdd7a4fd16d77589b5de5 911 Pfam PF00672 HAMP domain 325 391 1.2E-8 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS01315 535c6bd957dbdd7a4fd16d77589b5de5 911 PRINTS PR00344 Bacterial sensor protein C-terminal signature 695 709 1.7E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS01315 535c6bd957dbdd7a4fd16d77589b5de5 911 PRINTS PR00344 Bacterial sensor protein C-terminal signature 713 723 1.7E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS01315 535c6bd957dbdd7a4fd16d77589b5de5 911 PRINTS PR00344 Bacterial sensor protein C-terminal signature 750 763 1.7E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS01315 535c6bd957dbdd7a4fd16d77589b5de5 911 PRINTS PR00344 Bacterial sensor protein C-terminal signature 726 744 1.7E-17 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS01315 535c6bd957dbdd7a4fd16d77589b5de5 911 SUPERFAMILY SSF103190 44 221 6.28E-20 T 23-04-2016 IPR029151 Periplasmic sensor domain-like RPE_RS01315 535c6bd957dbdd7a4fd16d77589b5de5 911 SMART SM00448 785 898 4.5E-20 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS01315 535c6bd957dbdd7a4fd16d77589b5de5 911 SUPERFAMILY SSF55874 591 765 1.31E-40 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS01315 535c6bd957dbdd7a4fd16d77589b5de5 911 SUPERFAMILY SSF47384 528 599 6.47E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS01315 535c6bd957dbdd7a4fd16d77589b5de5 911 PANTHER PTHR24423:SF438 386 903 1.8E-178 T 23-04-2016 RPE_RS01315 535c6bd957dbdd7a4fd16d77589b5de5 911 PANTHER PTHR24423 386 903 1.8E-178 T 23-04-2016 RPE_RS01315 535c6bd957dbdd7a4fd16d77589b5de5 911 Gene3D G3DSA:1.10.287.130 529 589 5.6E-5 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS06645 31af3c3dc88c3e6ef5fd52b6339cf3af 350 Gene3D G3DSA:1.10.600.10 3 284 2.5E-83 T 23-04-2016 IPR008949 Isoprenoid synthase domain RPE_RS06645 31af3c3dc88c3e6ef5fd52b6339cf3af 350 ProSitePatterns PS01045 Squalene and phytoene synthases signature 2. 153 178 - T 23-04-2016 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 RPE_RS06645 31af3c3dc88c3e6ef5fd52b6339cf3af 350 PANTHER PTHR31480:SF0 2 294 3.2E-81 T 23-04-2016 RPE_RS06645 31af3c3dc88c3e6ef5fd52b6339cf3af 350 ProSitePatterns PS01044 Squalene and phytoene synthases signature 1. 123 138 - T 23-04-2016 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 RPE_RS06645 31af3c3dc88c3e6ef5fd52b6339cf3af 350 Pfam PF00494 Squalene/phytoene synthase 14 266 2.6E-72 T 23-04-2016 IPR002060 Squalene/phytoene synthase GO:0009058|GO:0016740 RPE_RS06645 31af3c3dc88c3e6ef5fd52b6339cf3af 350 PANTHER PTHR31480 2 294 3.2E-81 T 23-04-2016 RPE_RS06645 31af3c3dc88c3e6ef5fd52b6339cf3af 350 SUPERFAMILY SSF48576 6 278 1.73E-82 T 23-04-2016 IPR008949 Isoprenoid synthase domain RPE_RS18735 58b979810331ab3473b0194e8b5a44b2 70 PRINTS PR00050 Cold shock protein signature 25 34 3.0E-13 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RPE_RS18735 58b979810331ab3473b0194e8b5a44b2 70 PRINTS PR00050 Cold shock protein signature 4 19 3.0E-13 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RPE_RS18735 58b979810331ab3473b0194e8b5a44b2 70 PRINTS PR00050 Cold shock protein signature 40 58 3.0E-13 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RPE_RS18735 58b979810331ab3473b0194e8b5a44b2 70 Gene3D G3DSA:2.40.50.140 3 66 1.2E-25 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS18735 58b979810331ab3473b0194e8b5a44b2 70 SMART SM00357 3 69 8.2E-27 T 23-04-2016 IPR011129 Cold shock protein GO:0003676 RPE_RS18735 58b979810331ab3473b0194e8b5a44b2 70 PANTHER PTHR11544 4 57 1.3E-21 T 23-04-2016 RPE_RS18735 58b979810331ab3473b0194e8b5a44b2 70 Pfam PF00313 'Cold-shock' DNA-binding domain 4 67 1.2E-23 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RPE_RS18735 58b979810331ab3473b0194e8b5a44b2 70 PIRSF PIRSF002599 1 69 7.9E-21 T 23-04-2016 IPR012156 Cold shock, CspA GO:0003676 RPE_RS18735 58b979810331ab3473b0194e8b5a44b2 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 23-04-2016 IPR019844 Cold-shock conserved site RPE_RS18735 58b979810331ab3473b0194e8b5a44b2 70 SUPERFAMILY SSF50249 3 68 1.18E-22 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS07435 070689ca7e01146deb76bcfbd902ba19 151 SUPERFAMILY SSF54637 17 144 6.43E-34 T 23-04-2016 IPR029069 HotDog domain RPE_RS07435 070689ca7e01146deb76bcfbd902ba19 151 Gene3D G3DSA:3.10.129.10 11 145 6.6E-36 T 23-04-2016 IPR029069 HotDog domain RPE_RS07435 070689ca7e01146deb76bcfbd902ba19 151 Pfam PF13279 Thioesterase-like superfamily 24 137 9.4E-13 T 23-04-2016 RPE_RS07435 070689ca7e01146deb76bcfbd902ba19 151 PANTHER PTHR31793 8 143 6.4E-30 T 23-04-2016 RPE_RS13395 7dcb6cf1fbfee3f43f7188aa9c9dbcd0 707 SMART SM00028 87 120 24.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS13395 7dcb6cf1fbfee3f43f7188aa9c9dbcd0 707 SMART SM00028 257 290 0.4 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS13395 7dcb6cf1fbfee3f43f7188aa9c9dbcd0 707 SMART SM00028 121 154 0.11 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS13395 7dcb6cf1fbfee3f43f7188aa9c9dbcd0 707 SMART SM00028 19 52 22.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS13395 7dcb6cf1fbfee3f43f7188aa9c9dbcd0 707 SMART SM00028 155 188 0.12 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS13395 7dcb6cf1fbfee3f43f7188aa9c9dbcd0 707 SMART SM00028 53 86 10.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS13395 7dcb6cf1fbfee3f43f7188aa9c9dbcd0 707 SMART SM00028 223 256 13.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS13395 7dcb6cf1fbfee3f43f7188aa9c9dbcd0 707 Gene3D G3DSA:1.25.40.10 147 304 9.0E-32 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS13395 7dcb6cf1fbfee3f43f7188aa9c9dbcd0 707 Gene3D G3DSA:1.25.40.10 13 146 1.9E-26 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS13395 7dcb6cf1fbfee3f43f7188aa9c9dbcd0 707 Pfam PF13432 Tetratricopeptide repeat 125 188 2.2E-4 T 23-04-2016 RPE_RS13395 7dcb6cf1fbfee3f43f7188aa9c9dbcd0 707 Pfam PF13432 Tetratricopeptide repeat 234 290 2.8E-5 T 23-04-2016 RPE_RS13395 7dcb6cf1fbfee3f43f7188aa9c9dbcd0 707 Pfam PF13432 Tetratricopeptide repeat 25 88 6.6E-6 T 23-04-2016 RPE_RS13395 7dcb6cf1fbfee3f43f7188aa9c9dbcd0 707 PANTHER PTHR23083 30 291 1.2E-46 T 23-04-2016 RPE_RS13395 7dcb6cf1fbfee3f43f7188aa9c9dbcd0 707 SUPERFAMILY SSF48452 81 302 1.09E-33 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS13395 7dcb6cf1fbfee3f43f7188aa9c9dbcd0 707 Pfam PF13844 Glycosyl transferase family 41 512 699 1.1E-16 T 23-04-2016 IPR029489 O-GlcNAc transferase, C-terminal UniPathway: UPA00378 RPE_RS13395 7dcb6cf1fbfee3f43f7188aa9c9dbcd0 707 Pfam PF13844 Glycosyl transferase family 41 345 491 7.1E-14 T 23-04-2016 IPR029489 O-GlcNAc transferase, C-terminal UniPathway: UPA00378 RPE_RS13395 7dcb6cf1fbfee3f43f7188aa9c9dbcd0 707 SUPERFAMILY SSF48452 19 103 3.95E-11 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS13395 7dcb6cf1fbfee3f43f7188aa9c9dbcd0 707 SUPERFAMILY SSF53756 511 625 4.96E-8 T 23-04-2016 RPE_RS09810 e5bbfd320ba3276719d2979c27d76f1c 261 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 56 253 8.3E-50 T 23-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RPE_RS09810 e5bbfd320ba3276719d2979c27d76f1c 261 PANTHER PTHR11820:SF6 39 258 4.8E-68 T 23-04-2016 RPE_RS09810 e5bbfd320ba3276719d2979c27d76f1c 261 SUPERFAMILY SSF56529 48 255 7.72E-58 T 23-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RPE_RS09810 e5bbfd320ba3276719d2979c27d76f1c 261 PANTHER PTHR11820 39 258 4.8E-68 T 23-04-2016 RPE_RS09810 e5bbfd320ba3276719d2979c27d76f1c 261 Pfam PF10370 Domain of unknown function (DUF2437) 3 51 1.1E-13 T 23-04-2016 IPR018833 Domain of unknown function DUF2437 RPE_RS09810 e5bbfd320ba3276719d2979c27d76f1c 261 Gene3D G3DSA:3.90.850.10 48 257 3.2E-65 T 23-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RPE_RS09765 b6b1a2c11cb8b5ba7d2418218473dfb8 988 SUPERFAMILY SSF81301 555 836 1.83E-68 T 23-04-2016 RPE_RS09765 b6b1a2c11cb8b5ba7d2418218473dfb8 988 SUPERFAMILY SSF81593 839 983 3.61E-34 T 23-04-2016 RPE_RS09765 b6b1a2c11cb8b5ba7d2418218473dfb8 988 SUPERFAMILY SSF81593 316 468 3.22E-42 T 23-04-2016 RPE_RS09765 b6b1a2c11cb8b5ba7d2418218473dfb8 988 Hamap MF_00802 Glutamate-ammonia-ligase adenylyltransferase [glnE]. 57 971 17.631 T 23-04-2016 IPR023057 Glutamate-ammonia-ligase adenylyltransferase GO:0008882 RPE_RS09765 b6b1a2c11cb8b5ba7d2418218473dfb8 988 SUPERFAMILY SSF81301 50 315 2.78E-67 T 23-04-2016 RPE_RS09765 b6b1a2c11cb8b5ba7d2418218473dfb8 988 Gene3D G3DSA:3.30.460.10 667 833 9.2E-48 T 23-04-2016 RPE_RS09765 b6b1a2c11cb8b5ba7d2418218473dfb8 988 Gene3D G3DSA:3.30.460.10 141 314 3.8E-50 T 23-04-2016 RPE_RS09765 b6b1a2c11cb8b5ba7d2418218473dfb8 988 Pfam PF08335 GlnD PII-uridylyltransferase 849 983 4.6E-13 T 23-04-2016 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 RPE_RS09765 b6b1a2c11cb8b5ba7d2418218473dfb8 988 Pfam PF08335 GlnD PII-uridylyltransferase 328 468 3.6E-39 T 23-04-2016 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 RPE_RS09765 b6b1a2c11cb8b5ba7d2418218473dfb8 988 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 62 305 3.8E-64 T 23-04-2016 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 RPE_RS09765 b6b1a2c11cb8b5ba7d2418218473dfb8 988 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 584 823 3.8E-66 T 23-04-2016 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 RPE_RS09765 b6b1a2c11cb8b5ba7d2418218473dfb8 988 PANTHER PTHR30621 3 988 2.5E-298 T 23-04-2016 RPE_RS09905 bfff426068bafe8055eacf3197db42f9 167 Gene3D G3DSA:3.30.70.1150 52 133 4.9E-34 T 23-04-2016 RPE_RS09905 bfff426068bafe8055eacf3197db42f9 167 PANTHER PTHR34719:SF2 1 136 3.7E-51 T 23-04-2016 RPE_RS09905 bfff426068bafe8055eacf3197db42f9 167 Hamap MF_00476 Putative nickel-responsive regulator [nikR]. 1 132 28.042 T 23-04-2016 IPR022988 Nickel-responsive transcriptional regulator NikR GO:0003677|GO:0006355|GO:0010045|GO:0016151 RPE_RS09905 bfff426068bafe8055eacf3197db42f9 167 Gene3D G3DSA:1.10.1220.10 1 46 5.2E-21 T 23-04-2016 IPR013321 Arc-type ribbon-helix-helix GO:0006355 RPE_RS09905 bfff426068bafe8055eacf3197db42f9 167 Pfam PF01402 Ribbon-helix-helix protein, copG family 3 40 1.4E-8 T 23-04-2016 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 RPE_RS09905 bfff426068bafe8055eacf3197db42f9 167 Pfam PF08753 NikR C terminal nickel binding domain 54 129 5.7E-31 T 23-04-2016 IPR014864 Transcription factor, NikR, nickel binding C-terminal RPE_RS09905 bfff426068bafe8055eacf3197db42f9 167 SUPERFAMILY SSF55021 52 133 2.98E-27 T 23-04-2016 RPE_RS09905 bfff426068bafe8055eacf3197db42f9 167 PANTHER PTHR34719 1 136 3.7E-51 T 23-04-2016 RPE_RS09905 bfff426068bafe8055eacf3197db42f9 167 SUPERFAMILY SSF47598 1 45 8.89E-12 T 23-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 RPE_RS18340 f709e87ec274e72d7193d0aa964bd3ad 169 Gene3D G3DSA:1.20.1260.10 2 168 1.2E-65 T 23-04-2016 IPR012347 Ferritin-related RPE_RS18340 f709e87ec274e72d7193d0aa964bd3ad 169 Pfam PF05974 Domain of unknown function (DUF892) 11 167 1.5E-58 T 23-04-2016 IPR010287 Domain of unknown function DUF892 RPE_RS18340 f709e87ec274e72d7193d0aa964bd3ad 169 PANTHER PTHR30565 1 167 1.6E-70 T 23-04-2016 RPE_RS18340 f709e87ec274e72d7193d0aa964bd3ad 169 SUPERFAMILY SSF47240 1 158 2.84E-54 T 23-04-2016 IPR009078 Ferritin-like superfamily RPE_RS02030 e12aeffab02c2f6203fc18a27aad492a 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 23-04-2016 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 RPE_RS02030 e12aeffab02c2f6203fc18a27aad492a 112 PANTHER PTHR30115 1 112 2.1E-68 T 23-04-2016 RPE_RS02030 e12aeffab02c2f6203fc18a27aad492a 112 PRINTS PR00340 P-II protein signature 2 17 3.3E-40 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RPE_RS02030 e12aeffab02c2f6203fc18a27aad492a 112 PRINTS PR00340 P-II protein signature 52 75 3.3E-40 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RPE_RS02030 e12aeffab02c2f6203fc18a27aad492a 112 PRINTS PR00340 P-II protein signature 83 103 3.3E-40 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RPE_RS02030 e12aeffab02c2f6203fc18a27aad492a 112 PRINTS PR00340 P-II protein signature 23 41 3.3E-40 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RPE_RS02030 e12aeffab02c2f6203fc18a27aad492a 112 PIRSF PIRSF039144 1 112 7.0E-52 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RPE_RS02030 e12aeffab02c2f6203fc18a27aad492a 112 SMART SM00938 4 105 7.8E-63 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RPE_RS02030 e12aeffab02c2f6203fc18a27aad492a 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 1.7E-42 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RPE_RS02030 e12aeffab02c2f6203fc18a27aad492a 112 Gene3D G3DSA:3.30.70.120 1 112 2.7E-48 T 23-04-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RPE_RS02030 e12aeffab02c2f6203fc18a27aad492a 112 PANTHER PTHR30115:SF15 1 112 2.1E-68 T 23-04-2016 RPE_RS02030 e12aeffab02c2f6203fc18a27aad492a 112 SUPERFAMILY SSF54913 1 112 3.11E-44 T 23-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta RPE_RS02030 e12aeffab02c2f6203fc18a27aad492a 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 23-04-2016 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 RPE_RS00375 a5aa9a55bdca056d51ff2eecd155e830 166 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 25 164 1.2E-45 T 23-04-2016 IPR005247 YbhB/YbcL RPE_RS00375 a5aa9a55bdca056d51ff2eecd155e830 166 Gene3D G3DSA:3.90.280.10 3 166 9.4E-56 T 23-04-2016 IPR008914 Phosphatidylethanolamine-binding protein RPE_RS00375 a5aa9a55bdca056d51ff2eecd155e830 166 Pfam PF01161 Phosphatidylethanolamine-binding protein 26 164 8.8E-39 T 23-04-2016 IPR008914 Phosphatidylethanolamine-binding protein RPE_RS00375 a5aa9a55bdca056d51ff2eecd155e830 166 PANTHER PTHR30289 2 166 4.3E-74 T 23-04-2016 RPE_RS00375 a5aa9a55bdca056d51ff2eecd155e830 166 PANTHER PTHR30289:SF0 2 166 4.3E-74 T 23-04-2016 RPE_RS00375 a5aa9a55bdca056d51ff2eecd155e830 166 SUPERFAMILY SSF49777 3 165 3.27E-52 T 23-04-2016 IPR008914 Phosphatidylethanolamine-binding protein RPE_RS15730 0302be17c0be4edfd59b623fd55284c8 350 Gene3D G3DSA:3.40.50.300 37 201 6.1E-28 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15730 0302be17c0be4edfd59b623fd55284c8 350 PANTHER PTHR11603 17 350 8.1E-46 T 23-04-2016 RPE_RS15730 0302be17c0be4edfd59b623fd55284c8 350 SMART SM00382 52 196 9.5E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS15730 0302be17c0be4edfd59b623fd55284c8 350 Gene3D G3DSA:1.10.8.300 237 345 1.8E-23 T 23-04-2016 RPE_RS15730 0302be17c0be4edfd59b623fd55284c8 350 PIRSF PIRSF002849 3 350 2.5E-79 T 23-04-2016 IPR016366 ATPase chaperone, AAA-type, MoxR, predicted RPE_RS15730 0302be17c0be4edfd59b623fd55284c8 350 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 56 74 2.2E-5 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 RPE_RS15730 0302be17c0be4edfd59b623fd55284c8 350 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 125 143 2.2E-5 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 RPE_RS15730 0302be17c0be4edfd59b623fd55284c8 350 SUPERFAMILY SSF52540 237 322 2.79E-30 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15730 0302be17c0be4edfd59b623fd55284c8 350 SUPERFAMILY SSF52540 28 205 2.79E-30 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15730 0302be17c0be4edfd59b623fd55284c8 350 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 55 188 6.1E-25 T 23-04-2016 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 RPE_RS23285 7f24fdfff3f781762af4ac0db4ef6f02 1048 SUPERFAMILY SSF82693 268 325 1.44E-16 T 23-04-2016 RPE_RS23285 7f24fdfff3f781762af4ac0db4ef6f02 1048 Gene3D G3DSA:3.30.2090.10 183 265 4.7E-20 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS23285 7f24fdfff3f781762af4ac0db4ef6f02 1048 SUPERFAMILY SSF82714 183 266 5.89E-18 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS23285 7f24fdfff3f781762af4ac0db4ef6f02 1048 Gene3D G3DSA:3.30.2090.10 711 800 1.8E-17 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS23285 7f24fdfff3f781762af4ac0db4ef6f02 1048 SUPERFAMILY SSF82714 711 797 1.57E-16 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS23285 7f24fdfff3f781762af4ac0db4ef6f02 1048 PRINTS PR00702 Acriflavin resistance protein family signature 541 558 1.4E-30 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS23285 7f24fdfff3f781762af4ac0db4ef6f02 1048 PRINTS PR00702 Acriflavin resistance protein family signature 442 465 1.4E-30 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS23285 7f24fdfff3f781762af4ac0db4ef6f02 1048 PRINTS PR00702 Acriflavin resistance protein family signature 467 490 1.4E-30 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS23285 7f24fdfff3f781762af4ac0db4ef6f02 1048 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 1.4E-30 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS23285 7f24fdfff3f781762af4ac0db4ef6f02 1048 PRINTS PR00702 Acriflavin resistance protein family signature 331 354 1.4E-30 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS23285 7f24fdfff3f781762af4ac0db4ef6f02 1048 PRINTS PR00702 Acriflavin resistance protein family signature 358 379 1.4E-30 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS23285 7f24fdfff3f781762af4ac0db4ef6f02 1048 PRINTS PR00702 Acriflavin resistance protein family signature 386 410 1.4E-30 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS23285 7f24fdfff3f781762af4ac0db4ef6f02 1048 PANTHER PTHR32063:SF19 2 1032 0.0 T 23-04-2016 RPE_RS23285 7f24fdfff3f781762af4ac0db4ef6f02 1048 PANTHER PTHR32063 2 1032 0.0 T 23-04-2016 RPE_RS23285 7f24fdfff3f781762af4ac0db4ef6f02 1048 SUPERFAMILY SSF82866 291 495 5.23E-39 T 23-04-2016 RPE_RS23285 7f24fdfff3f781762af4ac0db4ef6f02 1048 SUPERFAMILY SSF82866 797 1034 9.02E-50 T 23-04-2016 RPE_RS23285 7f24fdfff3f781762af4ac0db4ef6f02 1048 Pfam PF00873 AcrB/AcrD/AcrF family 22 1030 1.3E-241 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS23285 7f24fdfff3f781762af4ac0db4ef6f02 1048 Gene3D G3DSA:3.30.70.1430 45 142 5.7E-22 T 23-04-2016 RPE_RS23285 7f24fdfff3f781762af4ac0db4ef6f02 1048 SUPERFAMILY SSF82693 45 128 9.42E-19 T 23-04-2016 RPE_RS23285 7f24fdfff3f781762af4ac0db4ef6f02 1048 Gene3D G3DSA:1.10.3850.10 273 496 1.2E-66 T 23-04-2016 RPE_RS23285 7f24fdfff3f781762af4ac0db4ef6f02 1048 Gene3D G3DSA:1.10.3850.10 803 1033 2.2E-55 T 23-04-2016 RPE_RS23285 7f24fdfff3f781762af4ac0db4ef6f02 1048 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 1 1036 0.0 T 23-04-2016 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 RPE_RS23285 7f24fdfff3f781762af4ac0db4ef6f02 1048 SUPERFAMILY SSF82693 137 182 1.44E-16 T 23-04-2016 RPE_RS07765 fedb946d0e94e84b8f94829e7fb34b22 426 Gene3D G3DSA:1.20.1250.20 33 222 5.4E-23 T 23-04-2016 RPE_RS07765 fedb946d0e94e84b8f94829e7fb34b22 426 SUPERFAMILY SSF103473 28 421 2.75E-52 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS07765 fedb946d0e94e84b8f94829e7fb34b22 426 Gene3D G3DSA:1.20.1250.20 247 422 4.5E-13 T 23-04-2016 RPE_RS07765 fedb946d0e94e84b8f94829e7fb34b22 426 PANTHER PTHR11360:SF115 32 423 3.6E-132 T 23-04-2016 RPE_RS07765 fedb946d0e94e84b8f94829e7fb34b22 426 PANTHER PTHR11360 32 423 3.6E-132 T 23-04-2016 RPE_RS07765 fedb946d0e94e84b8f94829e7fb34b22 426 Pfam PF07690 Major Facilitator Superfamily 44 386 3.3E-25 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RPE_RS22560 10819738a6807244bf49c37faaedf8d4 368 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 298 324 - T 23-04-2016 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site RPE_RS22560 10819738a6807244bf49c37faaedf8d4 368 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 235 317 3.5E-34 T 23-04-2016 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal RPE_RS22560 10819738a6807244bf49c37faaedf8d4 368 PANTHER PTHR10909 212 352 8.8E-29 T 23-04-2016 RPE_RS22560 10819738a6807244bf49c37faaedf8d4 368 PANTHER PTHR10909:SF294 212 352 8.8E-29 T 23-04-2016 RPE_RS22560 10819738a6807244bf49c37faaedf8d4 368 PIRSF PIRSF000089 27 359 5.3E-103 T 23-04-2016 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 RPE_RS22560 10819738a6807244bf49c37faaedf8d4 368 Gene3D G3DSA:3.40.50.1220 229 355 1.4E-50 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RPE_RS22560 10819738a6807244bf49c37faaedf8d4 368 Gene3D G3DSA:3.40.50.620 29 225 8.5E-71 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS22560 10819738a6807244bf49c37faaedf8d4 368 SUPERFAMILY SSF52467 235 353 5.07E-43 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RPE_RS22560 10819738a6807244bf49c37faaedf8d4 368 Pfam PF01012 Electron transfer flavoprotein domain 31 198 4.2E-37 T 23-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 RPE_RS22560 10819738a6807244bf49c37faaedf8d4 368 SUPERFAMILY SSF52402 29 224 1.74E-49 T 23-04-2016 RPE_RS22560 10819738a6807244bf49c37faaedf8d4 368 SMART SM00893 31 222 2.0E-39 T 23-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 RPE_RS23785 1a341e520b4fae0c20dade0d5a513361 195 SUPERFAMILY SSF55729 18 189 5.03E-45 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS23785 1a341e520b4fae0c20dade0d5a513361 195 PANTHER PTHR13256:SF24 11 194 4.2E-71 T 23-04-2016 RPE_RS23785 1a341e520b4fae0c20dade0d5a513361 195 Gene3D G3DSA:3.40.630.30 18 189 6.9E-51 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS23785 1a341e520b4fae0c20dade0d5a513361 195 PANTHER PTHR13256 11 194 4.2E-71 T 23-04-2016 RPE_RS23785 1a341e520b4fae0c20dade0d5a513361 195 Pfam PF13302 Acetyltransferase (GNAT) domain 21 164 1.6E-22 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RPE_RS17880 199eb37a64b747a106d090e4af3994e7 190 SUPERFAMILY SSF54768 19 87 5.13E-23 T 23-04-2016 RPE_RS17880 199eb37a64b747a106d090e4af3994e7 190 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 175 35.632 T 23-04-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 RPE_RS17880 199eb37a64b747a106d090e4af3994e7 190 Gene3D G3DSA:3.30.160.20 20 83 4.4E-30 T 23-04-2016 IPR014720 Double-stranded RNA-binding domain RPE_RS17880 199eb37a64b747a106d090e4af3994e7 190 Gene3D G3DSA:3.30.230.10 87 170 1.6E-33 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RPE_RS17880 199eb37a64b747a106d090e4af3994e7 190 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 20 174 1.1E-65 T 23-04-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 RPE_RS17880 199eb37a64b747a106d090e4af3994e7 190 PANTHER PTHR13718 13 173 1.6E-71 T 23-04-2016 IPR000851 Ribosomal protein S5 GO:0003735|GO:0005840|GO:0006412 RPE_RS17880 199eb37a64b747a106d090e4af3994e7 190 ProSitePatterns PS00585 Ribosomal protein S5 signature. 39 71 - T 23-04-2016 IPR018192 Ribosomal protein S5, N-terminal, conserved site RPE_RS17880 199eb37a64b747a106d090e4af3994e7 190 SUPERFAMILY SSF54211 91 170 5.06E-26 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RPE_RS17880 199eb37a64b747a106d090e4af3994e7 190 Pfam PF00333 Ribosomal protein S5, N-terminal domain 23 86 8.8E-29 T 23-04-2016 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 RPE_RS17880 199eb37a64b747a106d090e4af3994e7 190 Pfam PF03719 Ribosomal protein S5, C-terminal domain 99 169 1.6E-30 T 23-04-2016 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 RPE_RS14325 1033f53f4a92fa28c1a0769d38544e71 150 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 20 142 17.883 T 23-04-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 RPE_RS14325 1033f53f4a92fa28c1a0769d38544e71 150 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 22 137 1.3E-21 T 23-04-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 RPE_RS14325 1033f53f4a92fa28c1a0769d38544e71 150 PANTHER PTHR28259 17 150 1.2E-28 T 23-04-2016 RPE_RS23480 15f8603f781e9dda83c79933c99d06fb 638 PANTHER PTHR23076 1 636 0.0 T 23-04-2016 RPE_RS23480 15f8603f781e9dda83c79933c99d06fb 638 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 6 614 37.585 T 23-04-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 RPE_RS23480 15f8603f781e9dda83c79933c99d06fb 638 ProSitePatterns PS00674 AAA-protein family signature. 295 313 - T 23-04-2016 IPR003960 ATPase, AAA-type, conserved site GO:0005524 RPE_RS23480 15f8603f781e9dda83c79933c99d06fb 638 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 104 597 1.6E-237 T 23-04-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 RPE_RS23480 15f8603f781e9dda83c79933c99d06fb 638 SUPERFAMILY SSF140990 406 602 6.02E-72 T 23-04-2016 RPE_RS23480 15f8603f781e9dda83c79933c99d06fb 638 Gene3D G3DSA:3.40.50.300 152 334 3.6E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS23480 15f8603f781e9dda83c79933c99d06fb 638 Pfam PF01434 Peptidase family M41 386 595 1.0E-79 T 23-04-2016 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 RPE_RS23480 15f8603f781e9dda83c79933c99d06fb 638 Gene3D G3DSA:1.10.8.60 335 400 9.9E-30 T 23-04-2016 RPE_RS23480 15f8603f781e9dda83c79933c99d06fb 638 SUPERFAMILY SSF52540 146 395 3.46E-74 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS23480 15f8603f781e9dda83c79933c99d06fb 638 Pfam PF06480 FtsH Extracellular 10 86 3.6E-10 T 23-04-2016 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 RPE_RS23480 15f8603f781e9dda83c79933c99d06fb 638 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 192 324 1.5E-46 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RPE_RS23480 15f8603f781e9dda83c79933c99d06fb 638 SMART SM00382 188 327 4.8E-26 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS14330 4bc93f2eb25d8f71442b10b123c6014a 133 PANTHER PTHR28259 5 131 4.0E-31 T 23-04-2016 RPE_RS14330 4bc93f2eb25d8f71442b10b123c6014a 133 TIGRFAM TIGR00494 crcB: protein CrcB 9 124 3.5E-24 T 23-04-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 RPE_RS14330 4bc93f2eb25d8f71442b10b123c6014a 133 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 9 123 3.1E-20 T 23-04-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 RPE_RS14330 4bc93f2eb25d8f71442b10b123c6014a 133 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 8 128 18.805 T 23-04-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 RPE_RS10130 4bab93d5b740558e42859785b8baef11 426 PANTHER PTHR11712 13 423 6.7E-129 T 23-04-2016 RPE_RS10130 4bab93d5b740558e42859785b8baef11 426 Gene3D G3DSA:3.40.47.10 13 270 3.0E-52 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS10130 4bab93d5b740558e42859785b8baef11 426 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 13 259 1.4E-31 T 23-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal RPE_RS10130 4bab93d5b740558e42859785b8baef11 426 SUPERFAMILY SSF53901 227 424 4.52E-69 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS10130 4bab93d5b740558e42859785b8baef11 426 Gene3D G3DSA:3.40.47.10 277 423 3.3E-58 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS10130 4bab93d5b740558e42859785b8baef11 426 SMART SM00825 Beta-ketoacyl synthase 13 426 4.6E-15 T 23-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RPE_RS10130 4bab93d5b740558e42859785b8baef11 426 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 167 183 - T 23-04-2016 IPR018201 Beta-ketoacyl synthase, active site RPE_RS10130 4bab93d5b740558e42859785b8baef11 426 SUPERFAMILY SSF53901 13 264 7.07E-47 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS10130 4bab93d5b740558e42859785b8baef11 426 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 267 381 1.1E-34 T 23-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal RPE_RS06705 05204b715c89941b090bc364cd669b0a 67 SUPERFAMILY SSF56918 3 46 2.22E-18 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS06705 05204b715c89941b090bc364cd669b0a 67 ProSitePatterns PS00969 Antenna complexes beta subunits signature. 13 44 - T 23-04-2016 IPR023623 Antenna complex, beta subunit, conserved site RPE_RS06705 05204b715c89941b090bc364cd669b0a 67 PRINTS PR00674 Light harvesting protein B chain signature 28 45 3.4E-13 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS06705 05204b715c89941b090bc364cd669b0a 67 PRINTS PR00674 Light harvesting protein B chain signature 8 28 3.4E-13 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS06705 05204b715c89941b090bc364cd669b0a 67 Gene3D G3DSA:1.20.5.250 7 46 6.8E-22 T 23-04-2016 RPE_RS06705 05204b715c89941b090bc364cd669b0a 67 Pfam PF00556 Antenna complex alpha/beta subunit 12 46 1.9E-12 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS09355 62c9a48589eeac39c0867625a63884c7 135 Gene3D G3DSA:1.10.150.20 8 53 5.5E-6 T 23-04-2016 RPE_RS09355 62c9a48589eeac39c0867625a63884c7 135 Pfam PF14229 Domain of unknown function (DUF4332) 9 129 1.7E-37 T 23-04-2016 IPR025567 Domain of unknown function DUF4332 KEGG: 00970+6.1.1.6 RPE_RS02345 1ee4755a10c09b3a4537b9226e35dcba 478 PANTHER PTHR14359 73 473 6.5E-159 T 23-04-2016 RPE_RS02345 1ee4755a10c09b3a4537b9226e35dcba 478 SUPERFAMILY SSF47598 2 40 7.12E-12 T 23-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 RPE_RS02345 1ee4755a10c09b3a4537b9226e35dcba 478 Gene3D G3DSA:1.10.1220.10 9 42 2.0E-4 T 23-04-2016 IPR013321 Arc-type ribbon-helix-helix GO:0006355 RPE_RS02345 1ee4755a10c09b3a4537b9226e35dcba 478 SUPERFAMILY SSF52507 73 247 3.53E-53 T 23-04-2016 IPR003382 Flavoprotein GO:0003824 RPE_RS02345 1ee4755a10c09b3a4537b9226e35dcba 478 Gene3D G3DSA:3.40.50.1950 73 253 8.4E-57 T 23-04-2016 IPR003382 Flavoprotein GO:0003824 RPE_RS02345 1ee4755a10c09b3a4537b9226e35dcba 478 SUPERFAMILY SSF102645 255 474 1.19E-72 T 23-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 RPE_RS02345 1ee4755a10c09b3a4537b9226e35dcba 478 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 75 469 2.1E-116 T 23-04-2016 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|UniPathway: UPA00241|UniPathway: UPA00241 RPE_RS02345 1ee4755a10c09b3a4537b9226e35dcba 478 Pfam PF02441 Flavoprotein 75 202 7.0E-30 T 23-04-2016 IPR003382 Flavoprotein GO:0003824 RPE_RS02345 1ee4755a10c09b3a4537b9226e35dcba 478 Gene3D G3DSA:3.40.50.10300 254 475 4.7E-84 T 23-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 RPE_RS02345 1ee4755a10c09b3a4537b9226e35dcba 478 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 257 441 7.4E-71 T 23-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 RPE_RS02345 1ee4755a10c09b3a4537b9226e35dcba 478 PANTHER PTHR14359:SF20 73 473 6.5E-159 T 23-04-2016 RPE_RS23745 fe7d3330ada1a8bc97e237a567d583c9 313 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 23 302 1.5E-95 T 23-04-2016 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 UniPathway: UPA00834 RPE_RS23745 fe7d3330ada1a8bc97e237a567d583c9 313 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 20 304 19.832 T 23-04-2016 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 UniPathway: UPA00834 RPE_RS23745 fe7d3330ada1a8bc97e237a567d583c9 313 PANTHER PTHR11048 23 301 2.4E-76 T 23-04-2016 RPE_RS23745 fe7d3330ada1a8bc97e237a567d583c9 313 PANTHER PTHR11048:SF3 23 301 2.4E-76 T 23-04-2016 RPE_RS23745 fe7d3330ada1a8bc97e237a567d583c9 313 Pfam PF01040 UbiA prenyltransferase family 37 284 3.5E-58 T 23-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 RPE_RS23745 fe7d3330ada1a8bc97e237a567d583c9 313 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 74 96 - T 23-04-2016 IPR030470 UbiA prenyltransferase conserved site RPE_RS05405 41a4ba54bb28e2175959e3ceb161a300 558 PANTHER PTHR11575 1 555 1.6E-142 T 23-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RPE_RS05405 41a4ba54bb28e2175959e3ceb161a300 558 PRINTS PR01607 Apyrase family signature 421 444 2.2E-19 T 23-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RPE_RS05405 41a4ba54bb28e2175959e3ceb161a300 558 PRINTS PR01607 Apyrase family signature 270 293 2.2E-19 T 23-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RPE_RS05405 41a4ba54bb28e2175959e3ceb161a300 558 PRINTS PR01607 Apyrase family signature 34 52 2.2E-19 T 23-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RPE_RS05405 41a4ba54bb28e2175959e3ceb161a300 558 PRINTS PR01607 Apyrase family signature 495 514 2.2E-19 T 23-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RPE_RS05405 41a4ba54bb28e2175959e3ceb161a300 558 PRINTS PR01607 Apyrase family signature 237 254 2.2E-19 T 23-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RPE_RS05405 41a4ba54bb28e2175959e3ceb161a300 558 Pfam PF02872 5'-nucleotidase, C-terminal domain 364 521 1.6E-39 T 23-04-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 RPE_RS05405 41a4ba54bb28e2175959e3ceb161a300 558 PANTHER PTHR11575:SF7 1 555 1.6E-142 T 23-04-2016 RPE_RS05405 41a4ba54bb28e2175959e3ceb161a300 558 Gene3D G3DSA:3.60.21.10 30 351 4.0E-75 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RPE_RS05405 41a4ba54bb28e2175959e3ceb161a300 558 Gene3D G3DSA:3.90.780.10 362 556 3.3E-47 T 23-04-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 RPE_RS05405 41a4ba54bb28e2175959e3ceb161a300 558 SUPERFAMILY SSF55816 366 557 4.71E-45 T 23-04-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 RPE_RS05405 41a4ba54bb28e2175959e3ceb161a300 558 Pfam PF00149 Calcineurin-like phosphoesterase 36 287 1.2E-10 T 23-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 RPE_RS05405 41a4ba54bb28e2175959e3ceb161a300 558 SUPERFAMILY SSF56300 31 352 6.65E-70 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RPE_RS05405 41a4ba54bb28e2175959e3ceb161a300 558 ProSitePatterns PS00785 5'-nucleotidase signature 1. 36 48 - T 23-04-2016 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 RPE_RS20785 8188f185419e87cb378c5bd81418d931 561 SMART SM00283 308 555 1.2E-35 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS20785 8188f185419e87cb378c5bd81418d931 561 SMART SM00304 211 264 5.4E-6 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS20785 8188f185419e87cb378c5bd81418d931 561 PANTHER PTHR32089 32 246 1.2E-200 T 23-04-2016 RPE_RS20785 8188f185419e87cb378c5bd81418d931 561 PANTHER PTHR32089 279 558 1.2E-200 T 23-04-2016 RPE_RS20785 8188f185419e87cb378c5bd81418d931 561 Gene3D G3DSA:3.30.450.20 28 181 3.9E-29 T 23-04-2016 RPE_RS20785 8188f185419e87cb378c5bd81418d931 561 SUPERFAMILY SSF58104 307 554 1.83E-58 T 23-04-2016 RPE_RS20785 8188f185419e87cb378c5bd81418d931 561 SUPERFAMILY SSF58104 240 266 1.83E-58 T 23-04-2016 RPE_RS20785 8188f185419e87cb378c5bd81418d931 561 Pfam PF17200 Single Cache domain 2 41 189 3.3E-29 T 23-04-2016 IPR033480 Single Cache domain 2 RPE_RS20785 8188f185419e87cb378c5bd81418d931 561 Pfam PF00672 HAMP domain 192 259 2.2E-11 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS20785 8188f185419e87cb378c5bd81418d931 561 Gene3D G3DSA:1.10.287.950 317 523 1.9E-44 T 23-04-2016 RPE_RS20785 8188f185419e87cb378c5bd81418d931 561 SMART SM01049 35 128 1.1E-19 T 23-04-2016 IPR033480 Single Cache domain 2 RPE_RS20785 8188f185419e87cb378c5bd81418d931 561 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 375 547 9.6E-33 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS20785 8188f185419e87cb378c5bd81418d931 561 PANTHER PTHR32089:SF56 32 246 1.2E-200 T 23-04-2016 RPE_RS20785 8188f185419e87cb378c5bd81418d931 561 PANTHER PTHR32089:SF56 279 558 1.2E-200 T 23-04-2016 RPE_RS15040 935115ac2181dd21927b1b15597a4359 229 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 13 185 1.2E-67 T 23-04-2016 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 RPE_RS15040 935115ac2181dd21927b1b15597a4359 229 SUPERFAMILY SSF55729 7 206 3.76E-78 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS15040 935115ac2181dd21927b1b15597a4359 229 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 229 87.082 T 23-04-2016 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 RPE_RS15040 935115ac2181dd21927b1b15597a4359 229 PANTHER PTHR30098 7 229 7.8E-79 T 23-04-2016 RPE_RS15040 935115ac2181dd21927b1b15597a4359 229 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 14 204 4.5E-61 T 23-04-2016 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 RPE_RS20630 9d230251f22ce33834a7bb92900badde 153 PANTHER PTHR10642 7 147 2.2E-60 T 23-04-2016 RPE_RS20630 9d230251f22ce33834a7bb92900badde 153 SUPERFAMILY SSF53098 6 144 1.52E-58 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RPE_RS20630 9d230251f22ce33834a7bb92900badde 153 Hamap MF_00042 Ribonuclease H [rnhA]. 4 152 36.32 T 23-04-2016 IPR022892 Ribonuclease H GO:0004523 RPE_RS20630 9d230251f22ce33834a7bb92900badde 153 Gene3D G3DSA:3.30.420.10 7 146 1.7E-61 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RPE_RS20630 9d230251f22ce33834a7bb92900badde 153 Pfam PF00075 RNase H 6 143 5.3E-52 T 23-04-2016 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 RPE_RS13820 0c0b9d86bb0b8c2f7349c7c8dbbf47db 319 PANTHER PTHR10949 30 309 8.1E-161 T 23-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RPE_RS13820 0c0b9d86bb0b8c2f7349c7c8dbbf47db 319 PIRSF PIRSF005963 4 317 6.8E-129 T 23-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RPE_RS13820 0c0b9d86bb0b8c2f7349c7c8dbbf47db 319 Pfam PF04055 Radical SAM superfamily 84 243 1.0E-9 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RPE_RS13820 0c0b9d86bb0b8c2f7349c7c8dbbf47db 319 Hamap MF_00206 Lipoyl synthase [lipA]. 1 315 151.376 T 23-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RPE_RS13820 0c0b9d86bb0b8c2f7349c7c8dbbf47db 319 SMART SM00729 77 284 1.1E-8 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RPE_RS13820 0c0b9d86bb0b8c2f7349c7c8dbbf47db 319 TIGRFAM TIGR00510 lipA: lipoyl synthase 26 310 8.9E-112 T 23-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RPE_RS13820 0c0b9d86bb0b8c2f7349c7c8dbbf47db 319 SUPERFAMILY SSF102114 44 306 2.35E-59 T 23-04-2016 RPE_RS13820 0c0b9d86bb0b8c2f7349c7c8dbbf47db 319 Gene3D G3DSA:3.20.20.70 46 313 4.2E-66 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS24405 05bfaa7908ff739b489f9589b53a9284 312 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 157 306 1.6E-49 T 23-04-2016 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 RPE_RS24405 05bfaa7908ff739b489f9589b53a9284 312 Gene3D G3DSA:3.40.50.1370 4 148 2.0E-53 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RPE_RS24405 05bfaa7908ff739b489f9589b53a9284 312 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 6 308 9.6E-113 T 23-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 RPE_RS24405 05bfaa7908ff739b489f9589b53a9284 312 PANTHER PTHR11405:SF1 4 309 2.3E-139 T 23-04-2016 RPE_RS24405 05bfaa7908ff739b489f9589b53a9284 312 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 138 149 7.8E-29 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RPE_RS24405 05bfaa7908ff739b489f9589b53a9284 312 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 261 270 7.8E-29 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RPE_RS24405 05bfaa7908ff739b489f9589b53a9284 312 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 273 296 7.8E-29 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RPE_RS24405 05bfaa7908ff739b489f9589b53a9284 312 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 56 75 7.8E-29 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RPE_RS24405 05bfaa7908ff739b489f9589b53a9284 312 PANTHER PTHR11405 4 309 2.3E-139 T 23-04-2016 RPE_RS24405 05bfaa7908ff739b489f9589b53a9284 312 Gene3D G3DSA:3.40.50.1370 149 295 2.0E-60 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RPE_RS24405 05bfaa7908ff739b489f9589b53a9284 312 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 5 309 78.295 T 23-04-2016 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 RPE_RS24405 05bfaa7908ff739b489f9589b53a9284 312 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 6 151 3.9E-48 T 23-04-2016 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 RPE_RS24405 05bfaa7908ff739b489f9589b53a9284 312 PRINTS PR00102 Ornithine carbamoyltransferase signature 87 100 2.8E-29 T 23-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 RPE_RS24405 05bfaa7908ff739b489f9589b53a9284 312 PRINTS PR00102 Ornithine carbamoyltransferase signature 127 141 2.8E-29 T 23-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 RPE_RS24405 05bfaa7908ff739b489f9589b53a9284 312 PRINTS PR00102 Ornithine carbamoyltransferase signature 287 298 2.8E-29 T 23-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 RPE_RS24405 05bfaa7908ff739b489f9589b53a9284 312 PRINTS PR00102 Ornithine carbamoyltransferase signature 226 236 2.8E-29 T 23-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 RPE_RS24405 05bfaa7908ff739b489f9589b53a9284 312 PRINTS PR00102 Ornithine carbamoyltransferase signature 54 68 2.8E-29 T 23-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 RPE_RS24405 05bfaa7908ff739b489f9589b53a9284 312 SUPERFAMILY SSF53671 4 309 7.46E-106 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RPE_RS15960 9c51ce3e0a524dec2d71f41509718d9f 316 PANTHER PTHR23416 59 305 4.8E-88 T 23-04-2016 RPE_RS15960 9c51ce3e0a524dec2d71f41509718d9f 316 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 256 290 3.7E-7 T 23-04-2016 IPR001451 Hexapeptide repeat RPE_RS15960 9c51ce3e0a524dec2d71f41509718d9f 316 Gene3D G3DSA:2.160.10.10 183 305 5.8E-27 T 23-04-2016 RPE_RS15960 9c51ce3e0a524dec2d71f41509718d9f 316 SUPERFAMILY SSF51161 116 299 2.77E-44 T 23-04-2016 IPR011004 Trimeric LpxA-like RPE_RS15960 9c51ce3e0a524dec2d71f41509718d9f 316 PANTHER PTHR23416:SF65 59 305 4.8E-88 T 23-04-2016 RPE_RS15960 9c51ce3e0a524dec2d71f41509718d9f 316 Gene3D G3DSA:1.10.3130.10 43 182 2.8E-39 T 23-04-2016 RPE_RS04595 b2c6a706df08bf325de7bcc9e8350c2e 448 Gene3D G3DSA:2.60.120.10 125 210 2.4E-6 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS04595 b2c6a706df08bf325de7bcc9e8350c2e 448 PANTHER PTHR11056 7 448 4.5E-245 T 23-04-2016 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|UniPathway: UPA00139 RPE_RS04595 b2c6a706df08bf325de7bcc9e8350c2e 448 Hamap MF_00334 Homogentisate 1,2-dioxygenase [hmgA]. 20 445 72.095 T 23-04-2016 IPR022950 Homogentisate 1,2-dioxygenase, bacterial GO:0004411|GO:0006559|GO:0006572|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|UniPathway: UPA00139 RPE_RS04595 b2c6a706df08bf325de7bcc9e8350c2e 448 Gene3D G3DSA:2.60.120.10 211 235 1.9E-68 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS04595 b2c6a706df08bf325de7bcc9e8350c2e 448 Gene3D G3DSA:2.60.120.10 296 413 1.9E-68 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS04595 b2c6a706df08bf325de7bcc9e8350c2e 448 SUPERFAMILY SSF51182 20 446 3.38E-171 T 23-04-2016 IPR011051 RmlC-like cupin domain RPE_RS04595 b2c6a706df08bf325de7bcc9e8350c2e 448 Pfam PF04209 homogentisate 1,2-dioxygenase 21 443 1.2E-205 T 23-04-2016 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|UniPathway: UPA00139 RPE_RS04595 b2c6a706df08bf325de7bcc9e8350c2e 448 TIGRFAM TIGR01015 hmgA: homogentisate 1,2-dioxygenase 20 443 8.3E-206 T 23-04-2016 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|UniPathway: UPA00139 RPE_RS08540 b2eaac6fbafc0513598c3753829f0c81 234 PANTHER PTHR24220 3 233 2.1E-105 T 23-04-2016 RPE_RS08540 b2eaac6fbafc0513598c3753829f0c81 234 Pfam PF00005 ABC transporter 19 162 2.0E-31 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS08540 b2eaac6fbafc0513598c3753829f0c81 234 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS08540 b2eaac6fbafc0513598c3753829f0c81 234 SMART SM00382 26 201 2.7E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS08540 b2eaac6fbafc0513598c3753829f0c81 234 PANTHER PTHR24220:SF568 3 233 2.1E-105 T 23-04-2016 RPE_RS08540 b2eaac6fbafc0513598c3753829f0c81 234 SUPERFAMILY SSF52540 2 232 1.41E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS08540 b2eaac6fbafc0513598c3753829f0c81 234 Gene3D G3DSA:3.40.50.300 1 231 2.4E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS08540 b2eaac6fbafc0513598c3753829f0c81 234 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 215 233 1.1E-4 T 23-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RPE_RS10550 f1b90dcc12b0be7cb2c1a8d372f90a8f 485 Pfam PF02875 Mur ligase family, glutamate ligase domain 332 415 4.4E-24 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RPE_RS10550 f1b90dcc12b0be7cb2c1a8d372f90a8f 485 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 1 480 30.512 T 23-04-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 RPE_RS10550 f1b90dcc12b0be7cb2c1a8d372f90a8f 485 SUPERFAMILY SSF53244 332 481 4.45E-47 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RPE_RS10550 f1b90dcc12b0be7cb2c1a8d372f90a8f 485 SUPERFAMILY SSF53623 96 330 4.69E-66 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RPE_RS10550 f1b90dcc12b0be7cb2c1a8d372f90a8f 485 Gene3D G3DSA:3.40.1390.10 14 96 1.0E-23 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RPE_RS10550 f1b90dcc12b0be7cb2c1a8d372f90a8f 485 Gene3D G3DSA:3.90.190.20 335 473 4.1E-52 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RPE_RS10550 f1b90dcc12b0be7cb2c1a8d372f90a8f 485 PANTHER PTHR23135 9 482 3.8E-156 T 23-04-2016 RPE_RS10550 f1b90dcc12b0be7cb2c1a8d372f90a8f 485 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 20 480 2.8E-132 T 23-04-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 RPE_RS10550 f1b90dcc12b0be7cb2c1a8d372f90a8f 485 Pfam PF08245 Mur ligase middle domain 105 310 1.2E-40 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RPE_RS10550 f1b90dcc12b0be7cb2c1a8d372f90a8f 485 SUPERFAMILY SSF63418 15 96 1.57E-20 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RPE_RS10550 f1b90dcc12b0be7cb2c1a8d372f90a8f 485 Gene3D G3DSA:3.40.1190.10 97 334 4.8E-66 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RPE_RS10550 f1b90dcc12b0be7cb2c1a8d372f90a8f 485 PANTHER PTHR23135:SF4 9 482 3.8E-156 T 23-04-2016 RPE_RS10550 f1b90dcc12b0be7cb2c1a8d372f90a8f 485 Pfam PF01225 Mur ligase family, catalytic domain 22 95 1.2E-12 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RPE_RS18855 58b87aa0e217e2bbf1f80f9837dcba91 286 SUPERFAMILY SSF55021 176 275 2.25E-24 T 23-04-2016 RPE_RS18855 58b87aa0e217e2bbf1f80f9837dcba91 286 Gene3D G3DSA:3.40.190.10 2 90 6.0E-28 T 23-04-2016 RPE_RS18855 58b87aa0e217e2bbf1f80f9837dcba91 286 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 157 179 - T 23-04-2016 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 RPE_RS18855 58b87aa0e217e2bbf1f80f9837dcba91 286 Gene3D G3DSA:3.40.190.10 91 169 4.0E-28 T 23-04-2016 RPE_RS18855 58b87aa0e217e2bbf1f80f9837dcba91 286 Pfam PF00800 Prephenate dehydratase 7 183 1.3E-54 T 23-04-2016 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 RPE_RS18855 58b87aa0e217e2bbf1f80f9837dcba91 286 SUPERFAMILY SSF53850 6 187 2.53E-60 T 23-04-2016 RPE_RS18855 58b87aa0e217e2bbf1f80f9837dcba91 286 Gene3D G3DSA:3.30.70.260 190 274 2.0E-22 T 23-04-2016 RPE_RS18855 58b87aa0e217e2bbf1f80f9837dcba91 286 PIRSF PIRSF001500 1 276 9.3E-62 T 23-04-2016 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 RPE_RS18855 58b87aa0e217e2bbf1f80f9837dcba91 286 PANTHER PTHR21022 5 273 2.5E-100 T 23-04-2016 RPE_RS17265 b3b620ab7a6ef8c340d8df194ad33357 294 SUPERFAMILY SSF103481 192 290 1.83E-13 T 23-04-2016 RPE_RS17265 b3b620ab7a6ef8c340d8df194ad33357 294 Pfam PF00892 EamA-like transporter family 153 287 1.3E-11 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RPE_RS17265 b3b620ab7a6ef8c340d8df194ad33357 294 Pfam PF00892 EamA-like transporter family 17 142 1.5E-12 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RPE_RS17265 b3b620ab7a6ef8c340d8df194ad33357 294 PANTHER PTHR32322:SF11 1 291 8.6E-152 T 23-04-2016 RPE_RS17265 b3b620ab7a6ef8c340d8df194ad33357 294 SUPERFAMILY SSF103481 47 145 7.19E-12 T 23-04-2016 RPE_RS17265 b3b620ab7a6ef8c340d8df194ad33357 294 PANTHER PTHR32322 1 291 8.6E-152 T 23-04-2016 RPE_RS14940 fda5ad7a92091697d0d4f06862c72aed 152 Gene3D G3DSA:3.40.30.10 3 151 4.5E-45 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS14940 fda5ad7a92091697d0d4f06862c72aed 152 Pfam PF00578 AhpC/TSA family 4 130 6.0E-32 T 23-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 RPE_RS14940 fda5ad7a92091697d0d4f06862c72aed 152 SUPERFAMILY SSF52833 2 151 4.4E-45 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS14940 fda5ad7a92091697d0d4f06862c72aed 152 PANTHER PTHR10681 1 150 4.8E-39 T 23-04-2016 RPE_RS21985 0a7402bc78fe16a181ee8cb65af5ea9f 328 SMART SM00829 15 325 1.3E-5 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RPE_RS21985 0a7402bc78fe16a181ee8cb65af5ea9f 328 Gene3D G3DSA:3.40.50.720 135 294 8.6E-77 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS21985 0a7402bc78fe16a181ee8cb65af5ea9f 328 SUPERFAMILY SSF50129 4 148 1.05E-43 T 23-04-2016 IPR011032 GroES-like RPE_RS21985 0a7402bc78fe16a181ee8cb65af5ea9f 328 PANTHER PTHR11695:SF13 18 327 4.1E-159 T 23-04-2016 IPR014188 Acrylyl-CoA reductase AcuI RPE_RS21985 0a7402bc78fe16a181ee8cb65af5ea9f 328 Pfam PF00107 Zinc-binding dehydrogenase 161 273 1.1E-11 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RPE_RS21985 0a7402bc78fe16a181ee8cb65af5ea9f 328 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 31 91 5.1E-5 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RPE_RS21985 0a7402bc78fe16a181ee8cb65af5ea9f 328 Gene3D G3DSA:3.90.180.10 10 134 2.7E-7 T 23-04-2016 IPR011032 GroES-like RPE_RS21985 0a7402bc78fe16a181ee8cb65af5ea9f 328 SUPERFAMILY SSF51735 118 290 4.33E-37 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS21985 0a7402bc78fe16a181ee8cb65af5ea9f 328 PANTHER PTHR11695 18 327 4.1E-159 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RPE_RS21985 0a7402bc78fe16a181ee8cb65af5ea9f 328 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 5 327 2.6E-138 T 23-04-2016 IPR014188 Acrylyl-CoA reductase AcuI RPE_RS14265 4ef7f191922c33c0ff7e39aba18cb3dd 276 PANTHER PTHR24220 25 256 1.1E-118 T 23-04-2016 RPE_RS14265 4ef7f191922c33c0ff7e39aba18cb3dd 276 Pfam PF00005 ABC transporter 41 185 5.4E-27 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS14265 4ef7f191922c33c0ff7e39aba18cb3dd 276 SUPERFAMILY SSF52540 24 244 1.28E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14265 4ef7f191922c33c0ff7e39aba18cb3dd 276 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS14265 4ef7f191922c33c0ff7e39aba18cb3dd 276 PANTHER PTHR24220:SF581 25 256 1.1E-118 T 23-04-2016 RPE_RS14265 4ef7f191922c33c0ff7e39aba18cb3dd 276 Gene3D G3DSA:3.40.50.300 19 254 4.5E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14265 4ef7f191922c33c0ff7e39aba18cb3dd 276 SMART SM00382 48 233 5.4E-15 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS00495 7f7728e71e8dcf4b1cf68d6ee8307ce5 231 Gene3D G3DSA:3.40.50.150 14 137 1.2E-22 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS00495 7f7728e71e8dcf4b1cf68d6ee8307ce5 231 PANTHER PTHR10108:SF779 1 119 3.2E-16 T 23-04-2016 RPE_RS00495 7f7728e71e8dcf4b1cf68d6ee8307ce5 231 PANTHER PTHR10108 1 119 3.2E-16 T 23-04-2016 RPE_RS00495 7f7728e71e8dcf4b1cf68d6ee8307ce5 231 SUPERFAMILY SSF53335 10 132 2.07E-23 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS00495 7f7728e71e8dcf4b1cf68d6ee8307ce5 231 Pfam PF08241 Methyltransferase domain 23 111 4.4E-16 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 RPE_RS09970 1f61c1d6a464d77f4a60064d4cbb4209 228 SUPERFAMILY SSF56784 5 221 2.46E-54 T 23-04-2016 IPR023214 HAD-like domain RPE_RS09970 1f61c1d6a464d77f4a60064d4cbb4209 228 PANTHER PTHR18901:SF14 5 221 3.0E-50 T 23-04-2016 RPE_RS09970 1f61c1d6a464d77f4a60064d4cbb4209 228 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 102 184 8.7E-7 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RPE_RS09970 1f61c1d6a464d77f4a60064d4cbb4209 228 Gene3D G3DSA:3.40.50.1000 2 20 7.7E-35 T 23-04-2016 IPR023214 HAD-like domain RPE_RS09970 1f61c1d6a464d77f4a60064d4cbb4209 228 Gene3D G3DSA:3.40.50.1000 87 218 7.7E-35 T 23-04-2016 IPR023214 HAD-like domain RPE_RS09970 1f61c1d6a464d77f4a60064d4cbb4209 228 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 190 7.7E-31 T 23-04-2016 IPR023214 HAD-like domain RPE_RS09970 1f61c1d6a464d77f4a60064d4cbb4209 228 PANTHER PTHR18901 5 221 3.0E-50 T 23-04-2016 RPE_RS09970 1f61c1d6a464d77f4a60064d4cbb4209 228 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 7 217 7.8E-54 T 23-04-2016 IPR006346 2-phosphoglycolate phosphatase, prokaryotic GO:0008967|GO:0046295 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181|UniPathway: UPA00865 RPE_RS09970 1f61c1d6a464d77f4a60064d4cbb4209 228 Gene3D G3DSA:1.10.150.240 21 86 5.8E-16 T 23-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 RPE_RS06515 6f9df7d9ef98712600e9a54e5d8167ce 212 PANTHER PTHR26402:SF151 53 212 2.6E-34 T 23-04-2016 RPE_RS06515 6f9df7d9ef98712600e9a54e5d8167ce 212 PANTHER PTHR26402 53 212 2.6E-34 T 23-04-2016 RPE_RS06515 6f9df7d9ef98712600e9a54e5d8167ce 212 Gene3D G3DSA:3.40.50.2300 53 148 4.6E-16 T 23-04-2016 RPE_RS06515 6f9df7d9ef98712600e9a54e5d8167ce 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 6.7E-9 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS06515 6f9df7d9ef98712600e9a54e5d8167ce 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 6.7E-9 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS06515 6f9df7d9ef98712600e9a54e5d8167ce 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 6.7E-9 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS06515 6f9df7d9ef98712600e9a54e5d8167ce 212 SUPERFAMILY SSF52172 48 137 5.55E-13 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS06515 6f9df7d9ef98712600e9a54e5d8167ce 212 SUPERFAMILY SSF46894 138 209 3.74E-18 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RPE_RS06515 6f9df7d9ef98712600e9a54e5d8167ce 212 Pfam PF00072 Response regulator receiver domain 53 119 1.0E-8 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS06515 6f9df7d9ef98712600e9a54e5d8167ce 212 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 203 5.1E-16 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS06515 6f9df7d9ef98712600e9a54e5d8167ce 212 SMART SM00421 146 203 3.8E-17 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS06515 6f9df7d9ef98712600e9a54e5d8167ce 212 Gene3D G3DSA:1.10.10.10 149 208 7.9E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS02580 abf0b66baa60e6615a5d2f8ef4f6d51b 260 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 171 182 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RPE_RS02580 abf0b66baa60e6615a5d2f8ef4f6d51b 260 SUPERFAMILY SSF54292 27 129 1.8E-27 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RPE_RS02580 abf0b66baa60e6615a5d2f8ef4f6d51b 260 SUPERFAMILY SSF46548 131 258 2.27E-34 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 RPE_RS02580 abf0b66baa60e6615a5d2f8ef4f6d51b 260 Gene3D G3DSA:3.10.20.30 21 129 3.4E-40 T 23-04-2016 IPR012675 Beta-grasp domain RPE_RS02580 abf0b66baa60e6615a5d2f8ef4f6d51b 260 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 80 88 - T 23-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RPE_RS02580 abf0b66baa60e6615a5d2f8ef4f6d51b 260 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 30 134 4.1E-31 T 23-04-2016 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 RPE_RS02580 abf0b66baa60e6615a5d2f8ef4f6d51b 260 Pfam PF13534 4Fe-4S dicluster domain 170 243 8.2E-10 T 23-04-2016 RPE_RS02580 abf0b66baa60e6615a5d2f8ef4f6d51b 260 PANTHER PTHR11921 19 260 1.3E-183 T 23-04-2016 RPE_RS02580 abf0b66baa60e6615a5d2f8ef4f6d51b 260 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 32 252 2.0E-77 T 23-04-2016 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 RPE_RS02580 abf0b66baa60e6615a5d2f8ef4f6d51b 260 Gene3D G3DSA:1.10.1060.10 131 259 6.1E-48 T 23-04-2016 RPE_RS02580 abf0b66baa60e6615a5d2f8ef4f6d51b 260 PANTHER PTHR11921:SF27 19 260 1.3E-183 T 23-04-2016 RPE_RS08745 a4410d64d1ea9de698090bb02249a620 257 PANTHER PTHR24220 11 251 4.6E-129 T 23-04-2016 RPE_RS08745 a4410d64d1ea9de698090bb02249a620 257 PANTHER PTHR24220:SF483 11 251 4.6E-129 T 23-04-2016 RPE_RS08745 a4410d64d1ea9de698090bb02249a620 257 SMART SM00382 34 230 3.3E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS08745 a4410d64d1ea9de698090bb02249a620 257 SUPERFAMILY SSF52540 8 235 3.48E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS08745 a4410d64d1ea9de698090bb02249a620 257 Gene3D G3DSA:3.40.50.300 8 248 1.5E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS08745 a4410d64d1ea9de698090bb02249a620 257 Pfam PF00005 ABC transporter 25 173 3.1E-25 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS18435 b592bebbac47d547b67fe6948e0a2483 276 Pfam PF00588 SpoU rRNA Methylase family 124 264 2.5E-34 T 23-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RPE_RS18435 b592bebbac47d547b67fe6948e0a2483 276 SUPERFAMILY SSF75217 102 264 4.97E-40 T 23-04-2016 IPR029028 Alpha/beta knot methyltransferases RPE_RS18435 b592bebbac47d547b67fe6948e0a2483 276 SMART SM00967 41 114 2.6E-14 T 23-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 RPE_RS18435 b592bebbac47d547b67fe6948e0a2483 276 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 41 112 3.6E-10 T 23-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 RPE_RS18435 b592bebbac47d547b67fe6948e0a2483 276 PANTHER PTHR12029:SF58 3 264 1.3E-54 T 23-04-2016 RPE_RS18435 b592bebbac47d547b67fe6948e0a2483 276 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 41 264 2.4E-48 T 23-04-2016 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 RPE_RS18435 b592bebbac47d547b67fe6948e0a2483 276 Gene3D G3DSA:3.30.1330.30 37 110 9.3E-10 T 23-04-2016 IPR029064 50S ribosomal protein L30e-like RPE_RS18435 b592bebbac47d547b67fe6948e0a2483 276 Gene3D G3DSA:3.40.1280.10 121 264 1.9E-43 T 23-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RPE_RS18435 b592bebbac47d547b67fe6948e0a2483 276 SUPERFAMILY SSF55315 37 111 1.53E-11 T 23-04-2016 IPR029064 50S ribosomal protein L30e-like RPE_RS18435 b592bebbac47d547b67fe6948e0a2483 276 PANTHER PTHR12029 3 264 1.3E-54 T 23-04-2016 RPE_RS01795 10f3184ab0c7149ba9744f980be4e822 130 Hamap MF_00048 UPF0102 protein YraN [yraN]. 17 126 21.87 T 23-04-2016 IPR003509 Uncharacterised protein family UPF0102 RPE_RS01795 10f3184ab0c7149ba9744f980be4e822 130 SUPERFAMILY SSF52980 24 121 1.88E-25 T 23-04-2016 IPR011335 Restriction endonuclease type II-like RPE_RS01795 10f3184ab0c7149ba9744f980be4e822 130 PANTHER PTHR34039 13 130 1.0E-35 T 23-04-2016 RPE_RS01795 10f3184ab0c7149ba9744f980be4e822 130 PANTHER PTHR34039:SF1 13 130 1.0E-35 T 23-04-2016 RPE_RS01795 10f3184ab0c7149ba9744f980be4e822 130 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 20 114 3.4E-21 T 23-04-2016 IPR003509 Uncharacterised protein family UPF0102 RPE_RS01795 10f3184ab0c7149ba9744f980be4e822 130 Gene3D G3DSA:3.40.1350.10 24 128 3.3E-35 T 23-04-2016 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 RPE_RS01795 10f3184ab0c7149ba9744f980be4e822 130 Pfam PF02021 Uncharacterised protein family UPF0102 24 113 6.2E-25 T 23-04-2016 IPR003509 Uncharacterised protein family UPF0102 RPE_RS20475 ff5f9cab84d76caa601a66d6e0656cc2 105 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 15 102 2.0E-35 T 23-04-2016 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2 RPE_RS20475 ff5f9cab84d76caa601a66d6e0656cc2 105 PANTHER PTHR10160 11 102 3.2E-31 T 23-04-2016 RPE_RS04120 1172eeb413fa4389f3f443b8ef071ce2 537 PANTHER PTHR30031:SF0 24 533 3.7E-293 T 23-04-2016 RPE_RS04120 1172eeb413fa4389f3f443b8ef071ce2 537 PIRSF PIRSF006294 6 532 1.0E-224 T 23-04-2016 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117|UniPathway: UPA00138 RPE_RS04120 1172eeb413fa4389f3f443b8ef071ce2 537 TIGRFAM TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP) 17 531 2.7E-203 T 23-04-2016 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117|UniPathway: UPA00138 RPE_RS04120 1172eeb413fa4389f3f443b8ef071ce2 537 Gene3D G3DSA:3.90.228.20 216 278 6.8E-122 T 23-04-2016 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 RPE_RS04120 1172eeb413fa4389f3f443b8ef071ce2 537 Gene3D G3DSA:3.90.228.20 340 530 6.8E-122 T 23-04-2016 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 RPE_RS04120 1172eeb413fa4389f3f443b8ef071ce2 537 PANTHER PTHR30031 24 533 3.7E-293 T 23-04-2016 RPE_RS04120 1172eeb413fa4389f3f443b8ef071ce2 537 Gene3D G3DSA:3.40.449.10 24 215 2.7E-73 T 23-04-2016 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 RPE_RS04120 1172eeb413fa4389f3f443b8ef071ce2 537 SUPERFAMILY SSF53795 216 531 1.44E-134 T 23-04-2016 RPE_RS04120 1172eeb413fa4389f3f443b8ef071ce2 537 Hamap MF_00453 Phosphoenolpyruvate carboxykinase [ATP] [pckA]. 17 532 55.309 T 23-04-2016 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117|UniPathway: UPA00138 RPE_RS04120 1172eeb413fa4389f3f443b8ef071ce2 537 SUPERFAMILY SSF68923 11 215 2.27E-79 T 23-04-2016 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 RPE_RS04120 1172eeb413fa4389f3f443b8ef071ce2 537 Pfam PF01293 Phosphoenolpyruvate carboxykinase 24 484 6.0E-211 T 23-04-2016 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117|UniPathway: UPA00138 RPE_RS04120 1172eeb413fa4389f3f443b8ef071ce2 537 ProSitePatterns PS00532 Phosphoenolpyruvate carboxykinase (ATP) signature. 253 268 - T 23-04-2016 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117|UniPathway: UPA00138 RPE_RS17980 f2bdc25b24ff8f810dd70c8498829a76 690 Hamap MF_00054_B Elongation factor G [fusA]. 6 689 106.63 T 23-04-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 RPE_RS17980 f2bdc25b24ff8f810dd70c8498829a76 690 Pfam PF03764 Elongation factor G, domain IV 477 595 1.5E-44 T 23-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 RPE_RS17980 f2bdc25b24ff8f810dd70c8498829a76 690 Gene3D G3DSA:3.30.230.10 482 596 4.3E-47 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RPE_RS17980 f2bdc25b24ff8f810dd70c8498829a76 690 SUPERFAMILY SSF54980 400 478 2.66E-22 T 23-04-2016 IPR009022 Elongation factor G, III-V domain RPE_RS17980 f2bdc25b24ff8f810dd70c8498829a76 690 Pfam PF14492 Elongation Factor G, domain II 402 475 6.4E-31 T 23-04-2016 IPR009022 Elongation factor G, III-V domain RPE_RS17980 f2bdc25b24ff8f810dd70c8498829a76 690 Gene3D G3DSA:3.30.70.240 597 682 7.5E-32 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain RPE_RS17980 f2bdc25b24ff8f810dd70c8498829a76 690 SUPERFAMILY SSF54980 601 687 3.26E-28 T 23-04-2016 IPR009022 Elongation factor G, III-V domain RPE_RS17980 f2bdc25b24ff8f810dd70c8498829a76 690 PANTHER PTHR23115 301 689 0.0 T 23-04-2016 RPE_RS17980 f2bdc25b24ff8f810dd70c8498829a76 690 PANTHER PTHR23115 254 282 0.0 T 23-04-2016 RPE_RS17980 f2bdc25b24ff8f810dd70c8498829a76 690 PANTHER PTHR23115 7 177 0.0 T 23-04-2016 RPE_RS17980 f2bdc25b24ff8f810dd70c8498829a76 690 Gene3D G3DSA:3.30.70.870 404 478 7.2E-35 T 23-04-2016 RPE_RS17980 f2bdc25b24ff8f810dd70c8498829a76 690 PRINTS PR00315 GTP-binding elongation factor signature 58 66 7.0E-16 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS17980 f2bdc25b24ff8f810dd70c8498829a76 690 PRINTS PR00315 GTP-binding elongation factor signature 130 139 7.0E-16 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS17980 f2bdc25b24ff8f810dd70c8498829a76 690 PRINTS PR00315 GTP-binding elongation factor signature 12 25 7.0E-16 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS17980 f2bdc25b24ff8f810dd70c8498829a76 690 PRINTS PR00315 GTP-binding elongation factor signature 78 88 7.0E-16 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS17980 f2bdc25b24ff8f810dd70c8498829a76 690 PRINTS PR00315 GTP-binding elongation factor signature 94 105 7.0E-16 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS17980 f2bdc25b24ff8f810dd70c8498829a76 690 SUPERFAMILY SSF52540 7 281 3.56E-108 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS17980 f2bdc25b24ff8f810dd70c8498829a76 690 SMART SM00838 598 685 7.1E-51 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain RPE_RS17980 f2bdc25b24ff8f810dd70c8498829a76 690 PANTHER PTHR23115:SF66 301 689 0.0 T 23-04-2016 RPE_RS17980 f2bdc25b24ff8f810dd70c8498829a76 690 PANTHER PTHR23115:SF66 254 282 0.0 T 23-04-2016 RPE_RS17980 f2bdc25b24ff8f810dd70c8498829a76 690 PANTHER PTHR23115:SF66 7 177 0.0 T 23-04-2016 RPE_RS17980 f2bdc25b24ff8f810dd70c8498829a76 690 Gene3D G3DSA:3.40.50.300 7 286 2.1E-102 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS17980 f2bdc25b24ff8f810dd70c8498829a76 690 Pfam PF00679 Elongation factor G C-terminus 598 682 6.4E-28 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain RPE_RS17980 f2bdc25b24ff8f810dd70c8498829a76 690 Pfam PF00009 Elongation factor Tu GTP binding domain 9 281 1.0E-69 T 23-04-2016 RPE_RS17980 f2bdc25b24ff8f810dd70c8498829a76 690 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 10 180 1.7E-38 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RPE_RS17980 f2bdc25b24ff8f810dd70c8498829a76 690 Gene3D G3DSA:2.40.30.10 303 403 2.4E-37 T 23-04-2016 RPE_RS17980 f2bdc25b24ff8f810dd70c8498829a76 690 Pfam PF03144 Elongation factor Tu domain 2 322 389 4.5E-18 T 23-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RPE_RS17980 f2bdc25b24ff8f810dd70c8498829a76 690 SUPERFAMILY SSF54211 477 596 7.84E-42 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RPE_RS17980 f2bdc25b24ff8f810dd70c8498829a76 690 SMART SM00889 478 596 3.4E-64 T 23-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 RPE_RS17980 f2bdc25b24ff8f810dd70c8498829a76 690 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 688 0.0 T 23-04-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 RPE_RS17980 f2bdc25b24ff8f810dd70c8498829a76 690 SUPERFAMILY SSF50447 264 402 8.25E-37 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain RPE_RS17980 f2bdc25b24ff8f810dd70c8498829a76 690 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 23-04-2016 IPR031157 Tr-type G domain, conserved site RPE_RS23070 7016166b0272d44776bbf5b88dc9ad04 322 PANTHER PTHR30514:SF0 4 322 1.0E-81 T 23-04-2016 RPE_RS23070 7016166b0272d44776bbf5b88dc9ad04 322 Gene3D G3DSA:3.40.367.20 105 302 1.6E-66 T 23-04-2016 RPE_RS23070 7016166b0272d44776bbf5b88dc9ad04 322 TIGRFAM TIGR00749 glk: glucokinase 11 311 4.6E-81 T 23-04-2016 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 RPE_RS23070 7016166b0272d44776bbf5b88dc9ad04 322 Pfam PF02685 Glucokinase 11 314 2.4E-101 T 23-04-2016 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 RPE_RS23070 7016166b0272d44776bbf5b88dc9ad04 322 PANTHER PTHR30514 4 322 1.0E-81 T 23-04-2016 RPE_RS23070 7016166b0272d44776bbf5b88dc9ad04 322 SUPERFAMILY SSF53067 13 311 7.53E-51 T 23-04-2016 RPE_RS10015 63ecc4363a6a71282f775528541236c1 87 SUPERFAMILY SSF89447 5 59 2.98E-8 T 23-04-2016 RPE_RS10015 63ecc4363a6a71282f775528541236c1 87 PANTHER PTHR37550:SF3 1 82 1.4E-17 T 23-04-2016 RPE_RS10015 63ecc4363a6a71282f775528541236c1 87 Gene3D G3DSA:2.10.260.10 4 65 5.4E-4 T 23-04-2016 RPE_RS10015 63ecc4363a6a71282f775528541236c1 87 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 9 54 2.3E-9 T 23-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 RPE_RS10015 63ecc4363a6a71282f775528541236c1 87 SMART SM00966 9 51 5.2E-4 T 23-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 RPE_RS10015 63ecc4363a6a71282f775528541236c1 87 PANTHER PTHR37550 1 82 1.4E-17 T 23-04-2016 RPE_RS13850 415f84d02188debdf4de0904648996e7 480 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 6 471 1.2E-222 T 23-04-2016 IPR010114 Signal transduction response regulator, nitrogen regulation NR(I) GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 RPE_RS13850 415f84d02188debdf4de0904648996e7 480 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 437 454 1.9E-11 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RPE_RS13850 415f84d02188debdf4de0904648996e7 480 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 454 474 1.9E-11 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RPE_RS13850 415f84d02188debdf4de0904648996e7 480 Gene3D G3DSA:1.10.10.60 413 473 9.3E-19 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS13850 415f84d02188debdf4de0904648996e7 480 SUPERFAMILY SSF52172 4 184 1.11E-39 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS13850 415f84d02188debdf4de0904648996e7 480 Gene3D G3DSA:3.40.50.2300 5 129 1.3E-31 T 23-04-2016 RPE_RS13850 415f84d02188debdf4de0904648996e7 480 PANTHER PTHR32071:SF15 3 478 6.6E-202 T 23-04-2016 RPE_RS13850 415f84d02188debdf4de0904648996e7 480 Pfam PF00072 Response regulator receiver domain 6 115 1.4E-24 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS13850 415f84d02188debdf4de0904648996e7 480 SUPERFAMILY SSF52540 140 377 2.36E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS13850 415f84d02188debdf4de0904648996e7 480 Pfam PF02954 Bacterial regulatory protein, Fis family 431 469 2.3E-13 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RPE_RS13850 415f84d02188debdf4de0904648996e7 480 SUPERFAMILY SSF46689 413 473 2.51E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS13850 415f84d02188debdf4de0904648996e7 480 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 226 241 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RPE_RS13850 415f84d02188debdf4de0904648996e7 480 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 164 177 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RPE_RS13850 415f84d02188debdf4de0904648996e7 480 Gene3D G3DSA:3.40.50.300 139 312 3.7E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS13850 415f84d02188debdf4de0904648996e7 480 PANTHER PTHR32071 3 478 6.6E-202 T 23-04-2016 RPE_RS13850 415f84d02188debdf4de0904648996e7 480 Gene3D G3DSA:1.10.8.60 313 385 9.1E-18 T 23-04-2016 RPE_RS13850 415f84d02188debdf4de0904648996e7 480 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 352 361 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site RPE_RS13850 415f84d02188debdf4de0904648996e7 480 Pfam PF00158 Sigma-54 interaction domain 140 306 3.8E-68 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RPE_RS13850 415f84d02188debdf4de0904648996e7 480 SMART SM00448 4 115 8.4E-31 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS13850 415f84d02188debdf4de0904648996e7 480 SMART SM00382 160 307 2.2E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS02310 2dd4535ec89f1eaddd8a4c7fcbd740af 1163 Gene3D G3DSA:3.40.50.300 774 931 3.4E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02310 2dd4535ec89f1eaddd8a4c7fcbd740af 1163 Gene3D G3DSA:3.40.50.300 484 620 3.4E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02310 2dd4535ec89f1eaddd8a4c7fcbd740af 1163 PANTHER PTHR11070 856 1027 6.6E-138 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RPE_RS02310 2dd4535ec89f1eaddd8a4c7fcbd740af 1163 PANTHER PTHR11070 319 533 6.6E-138 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RPE_RS02310 2dd4535ec89f1eaddd8a4c7fcbd740af 1163 PANTHER PTHR11070 556 821 6.6E-138 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RPE_RS02310 2dd4535ec89f1eaddd8a4c7fcbd740af 1163 Gene3D G3DSA:1.10.486.10 628 764 1.2E-7 T 23-04-2016 RPE_RS02310 2dd4535ec89f1eaddd8a4c7fcbd740af 1163 Gene3D G3DSA:3.40.50.300 122 184 3.2E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02310 2dd4535ec89f1eaddd8a4c7fcbd740af 1163 Gene3D G3DSA:3.40.50.300 354 464 3.2E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02310 2dd4535ec89f1eaddd8a4c7fcbd740af 1163 Gene3D G3DSA:3.40.50.300 16 71 3.2E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02310 2dd4535ec89f1eaddd8a4c7fcbd740af 1163 TIGRFAM TIGR02784 addA_alphas: double-strand break repair helicase AddA 12 1148 0.0 T 23-04-2016 IPR014151 DNA helicase, AddA type RPE_RS02310 2dd4535ec89f1eaddd8a4c7fcbd740af 1163 SUPERFAMILY SSF52540 857 883 1.5E-98 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02310 2dd4535ec89f1eaddd8a4c7fcbd740af 1163 SUPERFAMILY SSF52540 344 813 1.5E-98 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02310 2dd4535ec89f1eaddd8a4c7fcbd740af 1163 SUPERFAMILY SSF52540 114 167 1.5E-98 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02310 2dd4535ec89f1eaddd8a4c7fcbd740af 1163 SUPERFAMILY SSF52540 20 75 1.5E-98 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02310 2dd4535ec89f1eaddd8a4c7fcbd740af 1163 PANTHER PTHR11070:SF23 319 533 6.6E-138 T 23-04-2016 RPE_RS02310 2dd4535ec89f1eaddd8a4c7fcbd740af 1163 Pfam PF13361 UvrD-like helicase C-terminal domain 562 877 4.9E-18 T 23-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RPE_RS02310 2dd4535ec89f1eaddd8a4c7fcbd740af 1163 PANTHER PTHR11070 19 84 6.6E-138 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RPE_RS02310 2dd4535ec89f1eaddd8a4c7fcbd740af 1163 PANTHER PTHR11070 114 199 6.6E-138 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RPE_RS02310 2dd4535ec89f1eaddd8a4c7fcbd740af 1163 PANTHER PTHR11070:SF23 556 821 6.6E-138 T 23-04-2016 RPE_RS02310 2dd4535ec89f1eaddd8a4c7fcbd740af 1163 Pfam PF12705 PD-(D/E)XK nuclease superfamily 982 1141 6.4E-11 T 23-04-2016 RPE_RS02310 2dd4535ec89f1eaddd8a4c7fcbd740af 1163 PANTHER PTHR11070:SF23 19 84 6.6E-138 T 23-04-2016 RPE_RS02310 2dd4535ec89f1eaddd8a4c7fcbd740af 1163 PANTHER PTHR11070:SF23 856 1027 6.6E-138 T 23-04-2016 RPE_RS02310 2dd4535ec89f1eaddd8a4c7fcbd740af 1163 PANTHER PTHR11070:SF23 114 199 6.6E-138 T 23-04-2016 RPE_RS02310 2dd4535ec89f1eaddd8a4c7fcbd740af 1163 Pfam PF00580 UvrD/REP helicase N-terminal domain 15 463 2.0E-47 T 23-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 RPE_RS02310 2dd4535ec89f1eaddd8a4c7fcbd740af 1163 SUPERFAMILY SSF52980 979 1128 7.51E-8 T 23-04-2016 IPR011335 Restriction endonuclease type II-like RPE_RS08025 3a321f047c56ad290219294d988edddd 121 Gene3D G3DSA:2.40.50.100 4 120 7.0E-49 T 23-04-2016 RPE_RS08025 3a321f047c56ad290219294d988edddd 121 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 43 72 - T 23-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site RPE_RS08025 3a321f047c56ad290219294d988edddd 121 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 1 121 26.405 T 23-04-2016 IPR002930 Glycine cleavage system H-protein RPE_RS08025 3a321f047c56ad290219294d988edddd 121 PANTHER PTHR11715 2 119 1.1E-62 T 23-04-2016 IPR002930 Glycine cleavage system H-protein RPE_RS08025 3a321f047c56ad290219294d988edddd 121 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 5 119 6.0E-43 T 23-04-2016 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 RPE_RS08025 3a321f047c56ad290219294d988edddd 121 SUPERFAMILY SSF51230 4 119 4.19E-42 T 23-04-2016 IPR011053 Single hybrid motif RPE_RS08025 3a321f047c56ad290219294d988edddd 121 Pfam PF01597 Glycine cleavage H-protein 4 118 1.3E-41 T 23-04-2016 IPR002930 Glycine cleavage system H-protein RPE_RS07470 0c85760093cc0cf30bd15c993d29fce6 307 Gene3D G3DSA:3.30.70.270 151 305 6.2E-50 T 23-04-2016 RPE_RS07470 0c85760093cc0cf30bd15c993d29fce6 307 PANTHER PTHR10799:SF750 182 304 2.9E-26 T 23-04-2016 RPE_RS07470 0c85760093cc0cf30bd15c993d29fce6 307 PANTHER PTHR10799:SF750 85 93 2.9E-26 T 23-04-2016 RPE_RS07470 0c85760093cc0cf30bd15c993d29fce6 307 PANTHER PTHR10799 182 304 2.9E-26 T 23-04-2016 RPE_RS07470 0c85760093cc0cf30bd15c993d29fce6 307 SUPERFAMILY SSF55073 154 305 1.41E-44 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS07470 0c85760093cc0cf30bd15c993d29fce6 307 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 148 305 6.5E-45 T 23-04-2016 IPR000160 GGDEF domain RPE_RS07470 0c85760093cc0cf30bd15c993d29fce6 307 SMART SM00267 138 307 2.6E-56 T 23-04-2016 IPR000160 GGDEF domain RPE_RS07470 0c85760093cc0cf30bd15c993d29fce6 307 Pfam PF00990 Diguanylate cyclase, GGDEF domain 150 302 2.8E-43 T 23-04-2016 IPR000160 GGDEF domain RPE_RS07470 0c85760093cc0cf30bd15c993d29fce6 307 PANTHER PTHR10799 85 93 2.9E-26 T 23-04-2016 RPE_RS01865 91f8d9f64b1143ee700fb9ff8ded0777 433 PANTHER PTHR11262:SF3 1 105 2.6E-201 T 23-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 RPE_RS01865 91f8d9f64b1143ee700fb9ff8ded0777 433 PANTHER PTHR11262:SF3 208 433 2.6E-201 T 23-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 RPE_RS01865 91f8d9f64b1143ee700fb9ff8ded0777 433 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 5 433 2.4E-186 T 23-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 RPE_RS01865 91f8d9f64b1143ee700fb9ff8ded0777 433 SMART SM00382 49 322 6.5E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS01865 91f8d9f64b1143ee700fb9ff8ded0777 433 Gene3D G3DSA:3.40.50.300 5 110 2.1E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01865 91f8d9f64b1143ee700fb9ff8ded0777 433 Gene3D G3DSA:3.40.50.300 235 321 2.1E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01865 91f8d9f64b1143ee700fb9ff8ded0777 433 PANTHER PTHR11262 1 105 2.6E-201 T 23-04-2016 RPE_RS01865 91f8d9f64b1143ee700fb9ff8ded0777 433 PANTHER PTHR11262 208 433 2.6E-201 T 23-04-2016 RPE_RS01865 91f8d9f64b1143ee700fb9ff8ded0777 433 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 1 433 41.591 T 23-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 RPE_RS01865 91f8d9f64b1143ee700fb9ff8ded0777 433 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 325 393 3.6E-7 T 23-04-2016 IPR019489 Clp ATPase, C-terminal RPE_RS01865 91f8d9f64b1143ee700fb9ff8ded0777 433 Pfam PF07724 AAA domain (Cdc48 subfamily) 196 319 5.4E-38 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RPE_RS01865 91f8d9f64b1143ee700fb9ff8ded0777 433 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 53 102 9.0E-7 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RPE_RS01865 91f8d9f64b1143ee700fb9ff8ded0777 433 SUPERFAMILY SSF52540 6 431 2.91E-85 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01865 91f8d9f64b1143ee700fb9ff8ded0777 433 Gene3D G3DSA:1.10.8.10 203 233 1.1E-24 T 23-04-2016 RPE_RS01865 91f8d9f64b1143ee700fb9ff8ded0777 433 Gene3D G3DSA:1.10.8.10 111 166 1.1E-24 T 23-04-2016 RPE_RS01865 91f8d9f64b1143ee700fb9ff8ded0777 433 Gene3D G3DSA:1.10.8.60 325 433 9.9E-35 T 23-04-2016 RPE_RS01865 91f8d9f64b1143ee700fb9ff8ded0777 433 SMART SM01086 325 416 2.3E-23 T 23-04-2016 IPR019489 Clp ATPase, C-terminal RPE_RS14130 eaa0b21b923fec5ac760bdfe29ce4f56 163 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 13 160 24.965 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RPE_RS14130 eaa0b21b923fec5ac760bdfe29ce4f56 163 PANTHER PTHR21058 11 163 5.4E-47 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RPE_RS14130 eaa0b21b923fec5ac760bdfe29ce4f56 163 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 21 155 1.7E-33 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RPE_RS14130 eaa0b21b923fec5ac760bdfe29ce4f56 163 SUPERFAMILY SSF52121 15 160 6.41E-48 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RPE_RS14130 eaa0b21b923fec5ac760bdfe29ce4f56 163 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 18 157 2.1E-44 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RPE_RS14130 eaa0b21b923fec5ac760bdfe29ce4f56 163 Gene3D G3DSA:3.40.50.960 11 158 2.4E-49 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 302 309 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 SMART SM01096 431 553 9.4E-70 T 23-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 SUPERFAMILY SSF56059 689 968 2.47E-91 T 23-04-2016 RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 SUPERFAMILY SSF52440 1 132 5.47E-44 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 SUPERFAMILY SSF56059 133 406 1.34E-108 T 23-04-2016 RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 SMART SM00851 991 1077 3.1E-34 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1085 0.0 T 23-04-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 PANTHER PTHR11405 1 753 0.0 T 23-04-2016 RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 PANTHER PTHR11405 775 1108 0.0 T 23-04-2016 RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 PANTHER PTHR11405:SF5 775 1108 0.0 T 23-04-2016 RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 Pfam PF02142 MGS-like domain 992 1077 3.8E-20 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 875 882 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 SUPERFAMILY SSF52335 971 1107 8.11E-40 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 PANTHER PTHR11405:SF5 1 753 0.0 T 23-04-2016 RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 Gene3D G3DSA:3.30.1490.20 702 786 4.2E-19 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 Gene3D G3DSA:3.40.50.1380 973 1108 4.8E-41 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1097 12.96 T 23-04-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 133 339 1.3E-71 T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 689 911 1.5E-26 T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 Gene3D G3DSA:3.40.50.20 543 678 1.9E-56 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 434 553 3.1E-39 T 23-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 SUPERFAMILY SSF48108 401 555 1.57E-47 T 23-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 Gene3D G3DSA:3.30.1490.20 146 205 5.4E-21 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 Gene3D G3DSA:3.30.470.20 206 404 3.9E-78 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 Gene3D G3DSA:3.30.470.20 787 968 4.6E-70 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 Gene3D G3DSA:3.40.50.20 4 112 2.4E-39 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 SUPERFAMILY SSF52440 569 691 9.35E-47 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 302 331 1.1E-65 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 1.1E-65 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 385 403 1.1E-65 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 1.1E-65 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 209 228 1.1E-65 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 244 261 1.1E-65 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 173 185 1.1E-65 T 23-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RPE_RS19800 0b3718ce8ba7fb56afe61482d2b029a4 1109 Gene3D G3DSA:1.10.1030.10 405 542 2.7E-47 T 23-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RPE_RS05070 db931dbf8add3d9e21e08c24262b7d55 583 PANTHER PTHR24222:SF0 13 560 4.2E-199 T 23-04-2016 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 RPE_RS05070 db931dbf8add3d9e21e08c24262b7d55 583 SMART SM00382 362 549 3.5E-6 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS05070 db931dbf8add3d9e21e08c24262b7d55 583 Pfam PF00664 ABC transporter transmembrane region 26 285 2.0E-13 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RPE_RS05070 db931dbf8add3d9e21e08c24262b7d55 583 Gene3D G3DSA:3.40.50.300 336 561 2.2E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS05070 db931dbf8add3d9e21e08c24262b7d55 583 Pfam PF00005 ABC transporter 353 501 2.3E-25 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS05070 db931dbf8add3d9e21e08c24262b7d55 583 ProSitePatterns PS00211 ABC transporters family signature. 474 488 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS05070 db931dbf8add3d9e21e08c24262b7d55 583 SUPERFAMILY SSF52540 326 561 2.46E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS05070 db931dbf8add3d9e21e08c24262b7d55 583 Gene3D G3DSA:1.20.1560.10 14 326 9.2E-37 T 23-04-2016 RPE_RS05070 db931dbf8add3d9e21e08c24262b7d55 583 TIGRFAM TIGR01842 type_I_sec_PrtD: type I secretion system ATPase 23 560 2.7E-197 T 23-04-2016 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 RPE_RS05070 db931dbf8add3d9e21e08c24262b7d55 583 SUPERFAMILY SSF90123 13 316 2.35E-43 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RPE_RS05070 db931dbf8add3d9e21e08c24262b7d55 583 PANTHER PTHR24222 13 560 4.2E-199 T 23-04-2016 RPE_RS17240 bd56961d8530cb382e6c135c7bad9f1f 670 Gene3D G3DSA:3.40.50.20 1 129 1.0E-50 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RPE_RS17240 bd56961d8530cb382e6c135c7bad9f1f 670 SUPERFAMILY SSF56059 83 348 1.54E-68 T 23-04-2016 RPE_RS17240 bd56961d8530cb382e6c135c7bad9f1f 670 SMART SM00878 336 447 6.0E-52 T 23-04-2016 IPR005482 Biotin carboxylase, C-terminal RPE_RS17240 bd56961d8530cb382e6c135c7bad9f1f 670 SUPERFAMILY SSF51230 592 669 5.5E-19 T 23-04-2016 IPR011053 Single hybrid motif RPE_RS17240 bd56961d8530cb382e6c135c7bad9f1f 670 PANTHER PTHR18866 1 669 0.0 T 23-04-2016 RPE_RS17240 bd56961d8530cb382e6c135c7bad9f1f 670 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RPE_RS17240 bd56961d8530cb382e6c135c7bad9f1f 670 Gene3D G3DSA:2.40.50.100 598 669 2.4E-21 T 23-04-2016 RPE_RS17240 bd56961d8530cb382e6c135c7bad9f1f 670 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RPE_RS17240 bd56961d8530cb382e6c135c7bad9f1f 670 Pfam PF02785 Biotin carboxylase C-terminal domain 336 447 2.9E-34 T 23-04-2016 IPR005482 Biotin carboxylase, C-terminal RPE_RS17240 bd56961d8530cb382e6c135c7bad9f1f 670 PANTHER PTHR18866:SF92 1 669 0.0 T 23-04-2016 RPE_RS17240 bd56961d8530cb382e6c135c7bad9f1f 670 SUPERFAMILY SSF51246 331 451 3.82E-37 T 23-04-2016 IPR011054 Rudiment single hybrid motif RPE_RS17240 bd56961d8530cb382e6c135c7bad9f1f 670 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 109 1.2E-44 T 23-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain RPE_RS17240 bd56961d8530cb382e6c135c7bad9f1f 670 Pfam PF00364 Biotin-requiring enzyme 604 668 5.8E-15 T 23-04-2016 IPR000089 Biotin/lipoyl attachment RPE_RS17240 bd56961d8530cb382e6c135c7bad9f1f 670 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 322 1.1E-80 T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RPE_RS17240 bd56961d8530cb382e6c135c7bad9f1f 670 Gene3D G3DSA:3.30.470.20 205 452 1.7E-96 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RPE_RS17240 bd56961d8530cb382e6c135c7bad9f1f 670 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 626 643 - T 23-04-2016 IPR001882 Biotin-binding site RPE_RS17240 bd56961d8530cb382e6c135c7bad9f1f 670 SUPERFAMILY SSF52440 1 113 2.37E-48 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RPE_RS17240 bd56961d8530cb382e6c135c7bad9f1f 670 Gene3D G3DSA:3.30.1490.20 130 202 2.4E-30 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RPE_RS13055 75f3e2f679e9cd206ccf7d60aab6f09f 360 PANTHER PTHR33121 96 338 1.5E-33 T 23-04-2016 RPE_RS13055 75f3e2f679e9cd206ccf7d60aab6f09f 360 SUPERFAMILY SSF55781 210 351 7.36E-21 T 23-04-2016 IPR029016 GAF domain-like RPE_RS13055 75f3e2f679e9cd206ccf7d60aab6f09f 360 Pfam PF01590 GAF domain 223 337 1.1E-7 T 23-04-2016 IPR003018 GAF domain GO:0005515 RPE_RS13055 75f3e2f679e9cd206ccf7d60aab6f09f 360 SMART SM00065 208 350 4.1E-6 T 23-04-2016 IPR003018 GAF domain GO:0005515 RPE_RS13055 75f3e2f679e9cd206ccf7d60aab6f09f 360 SUPERFAMILY SSF46955 5 52 9.16E-7 T 23-04-2016 IPR009061 Putative DNA-binding domain RPE_RS13055 75f3e2f679e9cd206ccf7d60aab6f09f 360 Gene3D G3DSA:3.30.450.40 206 352 4.9E-9 T 23-04-2016 IPR029016 GAF domain-like RPE_RS13055 75f3e2f679e9cd206ccf7d60aab6f09f 360 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 6 54 1.4E-13 T 23-04-2016 IPR010093 SinI-like, DNA-binding domain GO:0003677 RPE_RS13055 75f3e2f679e9cd206ccf7d60aab6f09f 360 Pfam PF12728 Helix-turn-helix domain 5 54 4.8E-9 T 23-04-2016 RPE_RS13055 75f3e2f679e9cd206ccf7d60aab6f09f 360 PANTHER PTHR33121:SF7 96 338 1.5E-33 T 23-04-2016 RPE_RS04160 b467ce100d95b32e6a5731843f275532 603 Gene3D G3DSA:3.30.70.240 408 495 1.0E-21 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain RPE_RS04160 b467ce100d95b32e6a5731843f275532 603 Gene3D G3DSA:3.40.50.300 7 200 9.0E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS04160 b467ce100d95b32e6a5731843f275532 603 SMART SM00838 405 492 0.0057 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain RPE_RS04160 b467ce100d95b32e6a5731843f275532 603 PANTHER PTHR23115 404 602 0.0 T 23-04-2016 RPE_RS04160 b467ce100d95b32e6a5731843f275532 603 PANTHER PTHR23115 7 380 0.0 T 23-04-2016 RPE_RS04160 b467ce100d95b32e6a5731843f275532 603 SUPERFAMILY SSF52540 5 241 4.83E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS04160 b467ce100d95b32e6a5731843f275532 603 Gene3D G3DSA:3.30.70.870 300 376 6.4E-25 T 23-04-2016 RPE_RS04160 b467ce100d95b32e6a5731843f275532 603 Pfam PF06421 GTP-binding protein LepA C-terminus 494 600 1.2E-48 T 23-04-2016 IPR013842 GTP-binding protein LepA, C-terminal RPE_RS04160 b467ce100d95b32e6a5731843f275532 603 SUPERFAMILY SSF54980 406 500 5.76E-24 T 23-04-2016 IPR009022 Elongation factor G, III-V domain RPE_RS04160 b467ce100d95b32e6a5731843f275532 603 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 10 181 7.9E-19 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RPE_RS04160 b467ce100d95b32e6a5731843f275532 603 Pfam PF00679 Elongation factor G C-terminus 406 492 1.0E-20 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain RPE_RS04160 b467ce100d95b32e6a5731843f275532 603 TIGRFAM TIGR01393 lepA: elongation factor 4 8 602 7.7E-292 T 23-04-2016 IPR006297 Elongation factor 4 GO:0005525 RPE_RS04160 b467ce100d95b32e6a5731843f275532 603 Pfam PF00009 Elongation factor Tu GTP binding domain 8 188 8.3E-52 T 23-04-2016 RPE_RS04160 b467ce100d95b32e6a5731843f275532 603 Hamap MF_00071 Elongation factor 4 [lepA]. 1 603 303.093 T 23-04-2016 IPR006297 Elongation factor 4 GO:0005525 RPE_RS04160 b467ce100d95b32e6a5731843f275532 603 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 49 64 - T 23-04-2016 IPR031157 Tr-type G domain, conserved site RPE_RS04160 b467ce100d95b32e6a5731843f275532 603 PRINTS PR00315 GTP-binding elongation factor signature 97 108 4.5E-13 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS04160 b467ce100d95b32e6a5731843f275532 603 PRINTS PR00315 GTP-binding elongation factor signature 133 142 4.5E-13 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS04160 b467ce100d95b32e6a5731843f275532 603 PRINTS PR00315 GTP-binding elongation factor signature 56 64 4.5E-13 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS04160 b467ce100d95b32e6a5731843f275532 603 PRINTS PR00315 GTP-binding elongation factor signature 11 24 4.5E-13 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS04160 b467ce100d95b32e6a5731843f275532 603 PRINTS PR00315 GTP-binding elongation factor signature 81 91 4.5E-13 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS04160 b467ce100d95b32e6a5731843f275532 603 Gene3D G3DSA:2.40.30.10 201 296 1.4E-23 T 23-04-2016 RPE_RS04160 b467ce100d95b32e6a5731843f275532 603 PANTHER PTHR23115:SF175 404 602 0.0 T 23-04-2016 RPE_RS04160 b467ce100d95b32e6a5731843f275532 603 PANTHER PTHR23115:SF175 7 380 0.0 T 23-04-2016 RPE_RS04160 b467ce100d95b32e6a5731843f275532 603 Pfam PF03144 Elongation factor Tu domain 2 212 282 3.5E-11 T 23-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RPE_RS04160 b467ce100d95b32e6a5731843f275532 603 SUPERFAMILY SSF54980 300 377 2.66E-17 T 23-04-2016 IPR009022 Elongation factor G, III-V domain RPE_RS12090 e417ede1baf02740cac722cd736e0211 283 SUPERFAMILY SSF81901 84 271 2.18E-33 T 23-04-2016 RPE_RS12090 e417ede1baf02740cac722cd736e0211 283 Gene3D G3DSA:1.25.40.10 67 263 1.1E-42 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS12090 e417ede1baf02740cac722cd736e0211 283 SMART SM00671 183 218 4.6E-7 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS12090 e417ede1baf02740cac722cd736e0211 283 SMART SM00671 219 254 3.1E-4 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS12090 e417ede1baf02740cac722cd736e0211 283 SMART SM00671 150 182 210.0 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS12090 e417ede1baf02740cac722cd736e0211 283 SMART SM00671 82 113 40.0 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS12090 e417ede1baf02740cac722cd736e0211 283 SMART SM00671 114 149 3.9E-6 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS12090 e417ede1baf02740cac722cd736e0211 283 Pfam PF08238 Sel1 repeat 114 149 1.6E-6 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS12090 e417ede1baf02740cac722cd736e0211 283 Pfam PF08238 Sel1 repeat 221 254 0.0013 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS12090 e417ede1baf02740cac722cd736e0211 283 Pfam PF08238 Sel1 repeat 183 218 1.4E-6 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS12090 e417ede1baf02740cac722cd736e0211 283 Pfam PF08238 Sel1 repeat 156 180 0.83 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS12090 e417ede1baf02740cac722cd736e0211 283 PANTHER PTHR11102 75 258 5.4E-33 T 23-04-2016 RPE_RS11125 39a9404156ce5ed9f58f5fc5fe8e0dca 256 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 14 224 9.4E-41 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RPE_RS11125 39a9404156ce5ed9f58f5fc5fe8e0dca 256 SUPERFAMILY SSF53790 10 247 2.75E-66 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RPE_RS11125 39a9404156ce5ed9f58f5fc5fe8e0dca 256 PANTHER PTHR21091:SF16 8 231 2.1E-55 T 23-04-2016 RPE_RS11125 39a9404156ce5ed9f58f5fc5fe8e0dca 256 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 12 246 6.9E-74 T 23-04-2016 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RPE_RS11125 39a9404156ce5ed9f58f5fc5fe8e0dca 256 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 17 31 - T 23-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RPE_RS11125 39a9404156ce5ed9f58f5fc5fe8e0dca 256 Gene3D G3DSA:3.40.1010.10 11 127 1.0E-38 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 RPE_RS11125 39a9404156ce5ed9f58f5fc5fe8e0dca 256 Gene3D G3DSA:3.30.950.10 130 247 4.0E-29 T 23-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 RPE_RS11125 39a9404156ce5ed9f58f5fc5fe8e0dca 256 PANTHER PTHR21091 8 231 2.1E-55 T 23-04-2016 RPE_RS19535 2bd8f863bee727a2d598b01f8e987d62 434 PANTHER PTHR36932 22 332 3.4E-26 T 23-04-2016 RPE_RS19535 2bd8f863bee727a2d598b01f8e987d62 434 PANTHER PTHR36932:SF1 22 332 3.4E-26 T 23-04-2016 RPE_RS19535 2bd8f863bee727a2d598b01f8e987d62 434 Gene3D G3DSA:3.40.50.980 88 157 9.5E-6 T 23-04-2016 RPE_RS19535 2bd8f863bee727a2d598b01f8e987d62 434 Pfam PF00501 AMP-binding enzyme 156 275 2.6E-9 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS19535 2bd8f863bee727a2d598b01f8e987d62 434 SUPERFAMILY SSF56801 26 418 1.42E-32 T 23-04-2016 RPE_RS19535 2bd8f863bee727a2d598b01f8e987d62 434 Gene3D G3DSA:3.40.50.980 158 220 3.0E-7 T 23-04-2016 RPE_RS01890 77937c40f004e73de1849f022f187ae7 229 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 2 225 3.0E-83 T 23-04-2016 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS01890 77937c40f004e73de1849f022f187ae7 229 PANTHER PTHR30231:SF0 1 195 3.5E-89 T 23-04-2016 RPE_RS01890 77937c40f004e73de1849f022f187ae7 229 SUPERFAMILY SSF53098 1 171 3.8E-53 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RPE_RS01890 77937c40f004e73de1849f022f187ae7 229 SMART SM00479 2 172 2.6E-46 T 23-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III RPE_RS01890 77937c40f004e73de1849f022f187ae7 229 Gene3D G3DSA:3.30.420.10 1 173 2.7E-63 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RPE_RS01890 77937c40f004e73de1849f022f187ae7 229 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 3 189 8.7E-50 T 23-04-2016 IPR006054 DNA polymerase III, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS01890 77937c40f004e73de1849f022f187ae7 229 PANTHER PTHR30231 1 195 3.5E-89 T 23-04-2016 RPE_RS01890 77937c40f004e73de1849f022f187ae7 229 Pfam PF00929 Exonuclease 4 163 2.3E-35 T 23-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III RPE_RS22565 9cece7e57f46ebb2172ab1622bddba36 281 Pfam PF01012 Electron transfer flavoprotein domain 23 214 4.9E-48 T 23-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 RPE_RS22565 9cece7e57f46ebb2172ab1622bddba36 281 Gene3D G3DSA:3.40.50.620 1 259 1.5E-88 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS22565 9cece7e57f46ebb2172ab1622bddba36 281 PANTHER PTHR21294 1 263 1.1E-104 T 23-04-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 RPE_RS22565 9cece7e57f46ebb2172ab1622bddba36 281 PIRSF PIRSF000090 1 268 5.0E-83 T 23-04-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 RPE_RS22565 9cece7e57f46ebb2172ab1622bddba36 281 SUPERFAMILY SSF52402 1 261 1.81E-73 T 23-04-2016 RPE_RS22565 9cece7e57f46ebb2172ab1622bddba36 281 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 163 183 - T 23-04-2016 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 RPE_RS22565 9cece7e57f46ebb2172ab1622bddba36 281 PANTHER PTHR21294:SF0 1 263 1.1E-104 T 23-04-2016 RPE_RS22565 9cece7e57f46ebb2172ab1622bddba36 281 SMART SM00893 22 219 1.3E-58 T 23-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 RPE_RS21385 2c5ec1f04f57111ec3512658ba1a1a5d 292 Pfam PF03705 CheR methyltransferase, all-alpha domain 4 54 2.3E-13 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RPE_RS21385 2c5ec1f04f57111ec3512658ba1a1a5d 292 Gene3D G3DSA:1.10.155.10 1 68 8.5E-11 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RPE_RS21385 2c5ec1f04f57111ec3512658ba1a1a5d 292 PANTHER PTHR24422 1 289 1.0E-113 T 23-04-2016 RPE_RS21385 2c5ec1f04f57111ec3512658ba1a1a5d 292 Pfam PF01739 CheR methyltransferase, SAM binding domain 70 262 2.5E-60 T 23-04-2016 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal RPE_RS21385 2c5ec1f04f57111ec3512658ba1a1a5d 292 SUPERFAMILY SSF53335 70 265 8.79E-50 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS21385 2c5ec1f04f57111ec3512658ba1a1a5d 292 PRINTS PR00996 Glutamate methyltransferase family signature 138 154 9.1E-41 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS21385 2c5ec1f04f57111ec3512658ba1a1a5d 292 PRINTS PR00996 Glutamate methyltransferase family signature 206 220 9.1E-41 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS21385 2c5ec1f04f57111ec3512658ba1a1a5d 292 PRINTS PR00996 Glutamate methyltransferase family signature 25 38 9.1E-41 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS21385 2c5ec1f04f57111ec3512658ba1a1a5d 292 PRINTS PR00996 Glutamate methyltransferase family signature 63 75 9.1E-41 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS21385 2c5ec1f04f57111ec3512658ba1a1a5d 292 PRINTS PR00996 Glutamate methyltransferase family signature 225 248 9.1E-41 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS21385 2c5ec1f04f57111ec3512658ba1a1a5d 292 PRINTS PR00996 Glutamate methyltransferase family signature 103 123 9.1E-41 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS21385 2c5ec1f04f57111ec3512658ba1a1a5d 292 SMART SM00138 3 266 7.5E-91 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS21385 2c5ec1f04f57111ec3512658ba1a1a5d 292 SUPERFAMILY SSF47757 1 69 2.22E-13 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RPE_RS21385 2c5ec1f04f57111ec3512658ba1a1a5d 292 Gene3D G3DSA:3.40.50.150 69 265 1.5E-63 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS21385 2c5ec1f04f57111ec3512658ba1a1a5d 292 PANTHER PTHR24422:SF9 1 289 1.0E-113 T 23-04-2016 RPE_RS12950 c35c06b983a3a5ffbeadfe0b2259b710 280 Gene3D G3DSA:3.30.1330.60 163 267 1.2E-12 T 23-04-2016 IPR006665 OmpA-like domain RPE_RS12950 c35c06b983a3a5ffbeadfe0b2259b710 280 SUPERFAMILY SSF103088 161 267 2.75E-16 T 23-04-2016 IPR006665 OmpA-like domain RPE_RS12950 c35c06b983a3a5ffbeadfe0b2259b710 280 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 7 60 1.3E-18 T 23-04-2016 IPR025713 Motility protein B, N-terminal domain RPE_RS12950 c35c06b983a3a5ffbeadfe0b2259b710 280 PANTHER PTHR30329:SF2 7 276 6.4E-75 T 23-04-2016 RPE_RS12950 c35c06b983a3a5ffbeadfe0b2259b710 280 PANTHER PTHR30329 7 276 6.4E-75 T 23-04-2016 RPE_RS12950 c35c06b983a3a5ffbeadfe0b2259b710 280 Pfam PF00691 OmpA family 179 254 1.1E-6 T 23-04-2016 IPR006665 OmpA-like domain RPE_RS12790 a7289f2cff22a6858694730eaeffe247 1165 SMART SM00481 7 74 6.9E-23 T 23-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 RPE_RS12790 a7289f2cff22a6858694730eaeffe247 1165 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 306 737 1.0E-174 T 23-04-2016 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS12790 a7289f2cff22a6858694730eaeffe247 1165 Gene3D G3DSA:3.20.20.140 6 268 6.7E-22 T 23-04-2016 RPE_RS12790 a7289f2cff22a6858694730eaeffe247 1165 Gene3D G3DSA:1.10.150.280 835 885 9.4E-7 T 23-04-2016 RPE_RS12790 a7289f2cff22a6858694730eaeffe247 1165 Pfam PF02811 PHP domain 8 181 5.7E-35 T 23-04-2016 IPR004013 PHP domain GO:0003824 RPE_RS12790 a7289f2cff22a6858694730eaeffe247 1165 Pfam PF14579 Helix-hairpin-helix motif 810 897 4.6E-25 T 23-04-2016 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS12790 a7289f2cff22a6858694730eaeffe247 1165 SUPERFAMILY SSF89550 6 270 3.14E-12 T 23-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 RPE_RS12790 a7289f2cff22a6858694730eaeffe247 1165 SUPERFAMILY SSF160975 831 882 3.79E-7 T 23-04-2016 RPE_RS12790 a7289f2cff22a6858694730eaeffe247 1165 PANTHER PTHR32294 2 1093 0.0 T 23-04-2016 RPE_RS12790 a7289f2cff22a6858694730eaeffe247 1165 PANTHER PTHR32294:SF0 2 1093 0.0 T 23-04-2016 RPE_RS12790 a7289f2cff22a6858694730eaeffe247 1165 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 6 1029 0.0 T 23-04-2016 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS22995 46246528ef4b622480fb3287ef766674 1123 Pfam PF00072 Response regulator receiver domain 920 1028 3.8E-16 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS22995 46246528ef4b622480fb3287ef766674 1123 SMART SM00388 672 738 2.9E-18 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS22995 46246528ef4b622480fb3287ef766674 1123 PANTHER PTHR24423 4 17 2.3E-107 T 23-04-2016 RPE_RS22995 46246528ef4b622480fb3287ef766674 1123 PANTHER PTHR24423 608 1070 2.3E-107 T 23-04-2016 RPE_RS22995 46246528ef4b622480fb3287ef766674 1123 SUPERFAMILY SSF47384 658 739 2.55E-18 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS22995 46246528ef4b622480fb3287ef766674 1123 SUPERFAMILY SSF52172 916 1046 2.42E-27 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS22995 46246528ef4b622480fb3287ef766674 1123 SUPERFAMILY SSF55874 728 892 3.01E-42 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS22995 46246528ef4b622480fb3287ef766674 1123 PANTHER PTHR24423:SF421 4 17 2.3E-107 T 23-04-2016 RPE_RS22995 46246528ef4b622480fb3287ef766674 1123 PANTHER PTHR24423:SF421 608 1070 2.3E-107 T 23-04-2016 RPE_RS22995 46246528ef4b622480fb3287ef766674 1123 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 786 894 1.4E-23 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS22995 46246528ef4b622480fb3287ef766674 1123 SMART SM00448 918 1030 2.5E-19 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS22995 46246528ef4b622480fb3287ef766674 1123 Gene3D G3DSA:1.10.287.130 665 734 5.3E-13 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS22995 46246528ef4b622480fb3287ef766674 1123 PRINTS PR00344 Bacterial sensor protein C-terminal signature 856 874 2.4E-9 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS22995 46246528ef4b622480fb3287ef766674 1123 PRINTS PR00344 Bacterial sensor protein C-terminal signature 880 893 2.4E-9 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS22995 46246528ef4b622480fb3287ef766674 1123 PRINTS PR00344 Bacterial sensor protein C-terminal signature 821 835 2.4E-9 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS22995 46246528ef4b622480fb3287ef766674 1123 PRINTS PR00344 Bacterial sensor protein C-terminal signature 839 849 2.4E-9 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS22995 46246528ef4b622480fb3287ef766674 1123 Pfam PF00512 His Kinase A (phospho-acceptor) domain 673 738 1.2E-14 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS22995 46246528ef4b622480fb3287ef766674 1123 Gene3D G3DSA:3.40.50.2300 917 1043 8.5E-25 T 23-04-2016 RPE_RS22995 46246528ef4b622480fb3287ef766674 1123 SMART SM00387 785 896 8.9E-31 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS22995 46246528ef4b622480fb3287ef766674 1123 Gene3D G3DSA:3.30.565.10 740 894 3.6E-40 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS02280 859e09ad0b7efa1b395d02115adce9cd 404 PANTHER PTHR10314 17 400 7.2E-228 T 23-04-2016 RPE_RS02280 859e09ad0b7efa1b395d02115adce9cd 404 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 64 387 5.3E-44 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RPE_RS02280 859e09ad0b7efa1b395d02115adce9cd 404 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 17 399 5.8E-186 T 23-04-2016 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RPE_RS02280 859e09ad0b7efa1b395d02115adce9cd 404 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 12 400 51.843 T 23-04-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RPE_RS02280 859e09ad0b7efa1b395d02115adce9cd 404 Gene3D G3DSA:3.40.50.1100 108 187 1.8E-20 T 23-04-2016 RPE_RS02280 859e09ad0b7efa1b395d02115adce9cd 404 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 91 105 - T 23-04-2016 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RPE_RS02280 859e09ad0b7efa1b395d02115adce9cd 404 PANTHER PTHR10314:SF3 17 400 7.2E-228 T 23-04-2016 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RPE_RS02280 859e09ad0b7efa1b395d02115adce9cd 404 Gene3D G3DSA:3.40.50.1100 188 402 4.2E-91 T 23-04-2016 RPE_RS02280 859e09ad0b7efa1b395d02115adce9cd 404 PIRSF PIRSF001413 9 404 2.1E-155 T 23-04-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RPE_RS02280 859e09ad0b7efa1b395d02115adce9cd 404 SUPERFAMILY SSF53686 13 399 5.37E-143 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RPE_RS01830 77d1106bc89ce8986dca8e7716b3c24f 107 PANTHER PTHR21256 1 106 2.5E-42 T 23-04-2016 RPE_RS01830 77d1106bc89ce8986dca8e7716b3c24f 107 SUPERFAMILY SSF101386 6 93 2.43E-23 T 23-04-2016 RPE_RS01830 77d1106bc89ce8986dca8e7716b3c24f 107 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 7 92 7.3E-16 T 23-04-2016 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31|UniPathway: UPA00031 RPE_RS01830 77d1106bc89ce8986dca8e7716b3c24f 107 Gene3D G3DSA:1.10.287.1080 31 84 6.0E-4 T 23-04-2016 RPE_RS01830 77d1106bc89ce8986dca8e7716b3c24f 107 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 7 89 2.8E-29 T 23-04-2016 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31|UniPathway: UPA00031 RPE_RS01830 77d1106bc89ce8986dca8e7716b3c24f 107 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 3 89 19.04 T 23-04-2016 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31|UniPathway: UPA00031 RPE_RS00800 0c319b55fe4f642a4a1be7f3ea75eed1 755 SUPERFAMILY SSF55781 12 160 2.09E-23 T 23-04-2016 IPR029016 GAF domain-like RPE_RS00800 0c319b55fe4f642a4a1be7f3ea75eed1 755 Gene3D G3DSA:3.30.450.40 11 165 2.6E-38 T 23-04-2016 IPR029016 GAF domain-like RPE_RS00800 0c319b55fe4f642a4a1be7f3ea75eed1 755 Gene3D G3DSA:3.50.30.10 311 433 3.8E-31 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RPE_RS00800 0c319b55fe4f642a4a1be7f3ea75eed1 755 SUPERFAMILY SSF51621 428 724 7.07E-87 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RPE_RS00800 0c319b55fe4f642a4a1be7f3ea75eed1 755 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 678 690 1.3E-14 T 23-04-2016 RPE_RS00800 0c319b55fe4f642a4a1be7f3ea75eed1 755 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 471 490 1.3E-14 T 23-04-2016 RPE_RS00800 0c319b55fe4f642a4a1be7f3ea75eed1 755 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 625 640 1.3E-14 T 23-04-2016 RPE_RS00800 0c319b55fe4f642a4a1be7f3ea75eed1 755 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 642 657 1.3E-14 T 23-04-2016 RPE_RS00800 0c319b55fe4f642a4a1be7f3ea75eed1 755 Gene3D G3DSA:3.20.20.60 434 736 8.6E-83 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RPE_RS00800 0c319b55fe4f642a4a1be7f3ea75eed1 755 PANTHER PTHR22931 217 728 5.5E-234 T 23-04-2016 RPE_RS00800 0c319b55fe4f642a4a1be7f3ea75eed1 755 Pfam PF05524 PEP-utilising enzyme, N-terminal 185 303 2.2E-22 T 23-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 RPE_RS00800 0c319b55fe4f642a4a1be7f3ea75eed1 755 SUPERFAMILY SSF52009 302 421 4.97E-26 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RPE_RS00800 0c319b55fe4f642a4a1be7f3ea75eed1 755 SUPERFAMILY SSF47831 200 320 7.19E-29 T 23-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 RPE_RS00800 0c319b55fe4f642a4a1be7f3ea75eed1 755 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 430 715 2.7E-82 T 23-04-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 RPE_RS00800 0c319b55fe4f642a4a1be7f3ea75eed1 755 PANTHER PTHR22931:SF23 217 728 5.5E-234 T 23-04-2016 RPE_RS00800 0c319b55fe4f642a4a1be7f3ea75eed1 755 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 625 643 - T 23-04-2016 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 RPE_RS00800 0c319b55fe4f642a4a1be7f3ea75eed1 755 SMART SM00065 24 170 9.9E-16 T 23-04-2016 IPR003018 GAF domain GO:0005515 RPE_RS00800 0c319b55fe4f642a4a1be7f3ea75eed1 755 Gene3D G3DSA:1.10.274.10 200 310 1.9E-32 T 23-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 RPE_RS00800 0c319b55fe4f642a4a1be7f3ea75eed1 755 Pfam PF00391 PEP-utilising enzyme, mobile domain 330 403 1.2E-15 T 23-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RPE_RS00800 0c319b55fe4f642a4a1be7f3ea75eed1 755 Pfam PF01590 GAF domain 26 157 6.2E-11 T 23-04-2016 IPR003018 GAF domain GO:0005515 RPE_RS00800 0c319b55fe4f642a4a1be7f3ea75eed1 755 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 185 735 1.8E-123 T 23-04-2016 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 RPE_RS20830 8ef96957d657f4f7d90eedb615ae7016 450 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 94 108 9.0E-11 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS20830 8ef96957d657f4f7d90eedb615ae7016 450 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 175 194 9.0E-11 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS20830 8ef96957d657f4f7d90eedb615ae7016 450 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 235 250 9.0E-11 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS20830 8ef96957d657f4f7d90eedb615ae7016 450 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 376 439 7.5E-15 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS20830 8ef96957d657f4f7d90eedb615ae7016 450 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 2 445 47.256 T 23-04-2016 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS20830 8ef96957d657f4f7d90eedb615ae7016 450 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 259 366 1.7E-34 T 23-04-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS20830 8ef96957d657f4f7d90eedb615ae7016 450 Gene3D G3DSA:3.40.120.10 3 138 1.2E-43 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS20830 8ef96957d657f4f7d90eedb615ae7016 450 PANTHER PTHR22573:SF15 2 446 2.3E-170 T 23-04-2016 RPE_RS20830 8ef96957d657f4f7d90eedb615ae7016 450 SUPERFAMILY SSF53738 259 367 4.32E-32 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS20830 8ef96957d657f4f7d90eedb615ae7016 450 Gene3D G3DSA:3.40.120.10 177 251 3.4E-27 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS20830 8ef96957d657f4f7d90eedb615ae7016 450 SUPERFAMILY SSF53738 2 182 4.71E-46 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS20830 8ef96957d657f4f7d90eedb615ae7016 450 Gene3D G3DSA:3.30.310.50 362 442 5.7E-16 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS20830 8ef96957d657f4f7d90eedb615ae7016 450 SUPERFAMILY SSF53738 157 258 1.45E-29 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS20830 8ef96957d657f4f7d90eedb615ae7016 450 PANTHER PTHR22573 2 446 2.3E-170 T 23-04-2016 RPE_RS20830 8ef96957d657f4f7d90eedb615ae7016 450 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3 133 3.6E-41 T 23-04-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS20830 8ef96957d657f4f7d90eedb615ae7016 450 Gene3D G3DSA:3.40.120.10 252 361 5.7E-37 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS20830 8ef96957d657f4f7d90eedb615ae7016 450 SUPERFAMILY SSF55957 360 445 3.79E-20 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS20830 8ef96957d657f4f7d90eedb615ae7016 450 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 6 441 5.2E-189 T 23-04-2016 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS20830 8ef96957d657f4f7d90eedb615ae7016 450 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 158 255 3.4E-20 T 23-04-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS17155 e23e5926ca9d92ec260a2494966ebaf4 258 Gene3D G3DSA:3.20.20.370 52 246 2.9E-49 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RPE_RS17155 e23e5926ca9d92ec260a2494966ebaf4 258 Pfam PF01522 Polysaccharide deacetylase 58 180 4.3E-25 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RPE_RS17155 e23e5926ca9d92ec260a2494966ebaf4 258 PANTHER PTHR10587:SF70 24 249 3.1E-60 T 23-04-2016 RPE_RS17155 e23e5926ca9d92ec260a2494966ebaf4 258 SUPERFAMILY SSF88713 47 246 1.61E-49 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RPE_RS17155 e23e5926ca9d92ec260a2494966ebaf4 258 PANTHER PTHR10587 24 249 3.1E-60 T 23-04-2016 RPE_RS13160 27ed0d2416cdf76cb88e4a533a98784a 1042 Gene3D G3DSA:3.30.70.1430 560 649 1.9E-9 T 23-04-2016 RPE_RS13160 27ed0d2416cdf76cb88e4a533a98784a 1042 SUPERFAMILY SSF82693 557 651 2.2E-14 T 23-04-2016 RPE_RS13160 27ed0d2416cdf76cb88e4a533a98784a 1042 Gene3D G3DSA:3.30.2090.10 706 795 3.4E-19 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS13160 27ed0d2416cdf76cb88e4a533a98784a 1042 SUPERFAMILY SSF82866 290 491 2.62E-47 T 23-04-2016 RPE_RS13160 27ed0d2416cdf76cb88e4a533a98784a 1042 Gene3D G3DSA:1.10.3850.10 798 1014 2.0E-52 T 23-04-2016 RPE_RS13160 27ed0d2416cdf76cb88e4a533a98784a 1042 PANTHER PTHR32063 1 1024 0.0 T 23-04-2016 RPE_RS13160 27ed0d2416cdf76cb88e4a533a98784a 1042 Gene3D G3DSA:3.30.2090.10 184 264 8.7E-16 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS13160 27ed0d2416cdf76cb88e4a533a98784a 1042 SUPERFAMILY SSF82693 40 131 2.09E-22 T 23-04-2016 RPE_RS13160 27ed0d2416cdf76cb88e4a533a98784a 1042 Gene3D G3DSA:3.30.70.1430 40 141 2.0E-27 T 23-04-2016 RPE_RS13160 27ed0d2416cdf76cb88e4a533a98784a 1042 Pfam PF00873 AcrB/AcrD/AcrF family 4 1012 0.0 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS13160 27ed0d2416cdf76cb88e4a533a98784a 1042 SUPERFAMILY SSF82714 184 266 1.12E-14 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS13160 27ed0d2416cdf76cb88e4a533a98784a 1042 Gene3D G3DSA:1.20.1640.10 285 499 2.8E-57 T 23-04-2016 RPE_RS13160 27ed0d2416cdf76cb88e4a533a98784a 1042 SUPERFAMILY SSF82693 137 182 6.54E-21 T 23-04-2016 RPE_RS13160 27ed0d2416cdf76cb88e4a533a98784a 1042 SUPERFAMILY SSF82693 268 324 6.54E-21 T 23-04-2016 RPE_RS13160 27ed0d2416cdf76cb88e4a533a98784a 1042 PANTHER PTHR32063:SF21 1 1024 0.0 T 23-04-2016 RPE_RS13160 27ed0d2416cdf76cb88e4a533a98784a 1042 SUPERFAMILY SSF82866 792 1015 2.75E-43 T 23-04-2016 RPE_RS13160 27ed0d2416cdf76cb88e4a533a98784a 1042 SUPERFAMILY SSF82714 707 792 1.96E-18 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS13160 27ed0d2416cdf76cb88e4a533a98784a 1042 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 2.4E-82 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS13160 27ed0d2416cdf76cb88e4a533a98784a 1042 PRINTS PR00702 Acriflavin resistance protein family signature 544 561 2.4E-82 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS13160 27ed0d2416cdf76cb88e4a533a98784a 1042 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 2.4E-82 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS13160 27ed0d2416cdf76cb88e4a533a98784a 1042 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 2.4E-82 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS13160 27ed0d2416cdf76cb88e4a533a98784a 1042 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 2.4E-82 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS13160 27ed0d2416cdf76cb88e4a533a98784a 1042 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 2.4E-82 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS13160 27ed0d2416cdf76cb88e4a533a98784a 1042 PRINTS PR00702 Acriflavin resistance protein family signature 611 625 2.4E-82 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS13160 27ed0d2416cdf76cb88e4a533a98784a 1042 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 2.4E-82 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS13160 27ed0d2416cdf76cb88e4a533a98784a 1042 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 2.4E-82 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS07375 6c8a9771dc1ce611c3e7bc6d4de034e1 265 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 12 226 1.8E-12 T 23-04-2016 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type RPE_RS07375 6c8a9771dc1ce611c3e7bc6d4de034e1 265 PANTHER PTHR34990 1 265 1.5E-144 T 23-04-2016 RPE_RS07375 6c8a9771dc1ce611c3e7bc6d4de034e1 265 SUPERFAMILY SSF56300 7 251 5.01E-37 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RPE_RS07375 6c8a9771dc1ce611c3e7bc6d4de034e1 265 PANTHER PTHR34990:SF2 1 265 1.5E-144 T 23-04-2016 RPE_RS07375 6c8a9771dc1ce611c3e7bc6d4de034e1 265 Gene3D G3DSA:3.60.21.10 11 148 2.1E-34 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RPE_RS07375 6c8a9771dc1ce611c3e7bc6d4de034e1 265 Gene3D G3DSA:3.60.21.10 194 246 2.1E-34 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RPE_RS21145 73609030c73ccaacb13df3865c095bfa 278 SMART SM00382 45 251 6.7E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS21145 73609030c73ccaacb13df3865c095bfa 278 Pfam PF00005 ABC transporter 36 184 2.8E-24 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS21145 73609030c73ccaacb13df3865c095bfa 278 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS21145 73609030c73ccaacb13df3865c095bfa 278 PANTHER PTHR24220:SF498 21 278 2.5E-170 T 23-04-2016 RPE_RS21145 73609030c73ccaacb13df3865c095bfa 278 PANTHER PTHR24220 21 278 2.5E-170 T 23-04-2016 RPE_RS21145 73609030c73ccaacb13df3865c095bfa 278 SUPERFAMILY SSF52540 18 255 1.52E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS21145 73609030c73ccaacb13df3865c095bfa 278 Gene3D G3DSA:3.40.50.300 17 251 4.0E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS03005 19ac00f1a63845f4664f503dab93f975 577 PANTHER PTHR32154:SF20 10 385 9.1E-111 T 23-04-2016 RPE_RS03005 19ac00f1a63845f4664f503dab93f975 577 PANTHER PTHR32154:SF20 412 542 9.1E-111 T 23-04-2016 RPE_RS03005 19ac00f1a63845f4664f503dab93f975 577 PANTHER PTHR32154 10 385 9.1E-111 T 23-04-2016 RPE_RS03005 19ac00f1a63845f4664f503dab93f975 577 PANTHER PTHR32154 412 542 9.1E-111 T 23-04-2016 RPE_RS03005 19ac00f1a63845f4664f503dab93f975 577 Gene3D G3DSA:3.40.50.970 198 390 3.0E-68 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS03005 19ac00f1a63845f4664f503dab93f975 577 Gene3D G3DSA:3.40.50.920 471 545 5.3E-16 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RPE_RS03005 19ac00f1a63845f4664f503dab93f975 577 Gene3D G3DSA:3.40.920.10 8 183 2.2E-20 T 23-04-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 RPE_RS03005 19ac00f1a63845f4664f503dab93f975 577 SUPERFAMILY SSF52518 204 457 4.2E-60 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS03005 19ac00f1a63845f4664f503dab93f975 577 TIGRFAM TIGR03710 OAFO_sf: 2-oxoacid:acceptor oxidoreductase, alpha subunit 10 565 8.9E-173 T 23-04-2016 IPR022367 2-oxoacid:acceptor oxidoreductase, alpha subunit KEGG: 00020+1.2.7.3|KEGG: 00720+1.2.7.3|MetaCyc: PWY-5392|MetaCyc: PWY-6969|UniPathway: UPA00223 RPE_RS03005 19ac00f1a63845f4664f503dab93f975 577 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 473 544 3.8E-8 T 23-04-2016 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II RPE_RS03005 19ac00f1a63845f4664f503dab93f975 577 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 18 181 3.5E-24 T 23-04-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 RPE_RS03005 19ac00f1a63845f4664f503dab93f975 577 SUPERFAMILY SSF53323 10 224 5.89E-22 T 23-04-2016 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 RPE_RS03005 19ac00f1a63845f4664f503dab93f975 577 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 216 449 8.6E-53 T 23-04-2016 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 RPE_RS03005 19ac00f1a63845f4664f503dab93f975 577 SUPERFAMILY SSF52922 470 572 6.71E-20 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RPE_RS03320 5de9da0c507bae4bdf4fca2f95f2b761 635 Gene3D G3DSA:3.40.50.300 394 625 5.4E-86 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS03320 5de9da0c507bae4bdf4fca2f95f2b761 635 Pfam PF00664 ABC transporter transmembrane region 78 342 2.1E-51 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RPE_RS03320 5de9da0c507bae4bdf4fca2f95f2b761 635 ProSitePatterns PS00211 ABC transporters family signature. 533 547 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS03320 5de9da0c507bae4bdf4fca2f95f2b761 635 TIGRFAM TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein 58 632 1.4E-276 T 23-04-2016 IPR011918 ABC transporter, ATP-binding/permease protein RPE_RS03320 5de9da0c507bae4bdf4fca2f95f2b761 635 PANTHER PTHR24221 60 633 4.3E-242 T 23-04-2016 RPE_RS03320 5de9da0c507bae4bdf4fca2f95f2b761 635 Pfam PF00005 ABC transporter 412 561 2.9E-36 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS03320 5de9da0c507bae4bdf4fca2f95f2b761 635 Gene3D G3DSA:1.20.1560.10 65 379 4.6E-79 T 23-04-2016 RPE_RS03320 5de9da0c507bae4bdf4fca2f95f2b761 635 SUPERFAMILY SSF52540 385 632 2.44E-91 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS03320 5de9da0c507bae4bdf4fca2f95f2b761 635 SUPERFAMILY SSF90123 65 380 1.96E-75 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RPE_RS03320 5de9da0c507bae4bdf4fca2f95f2b761 635 SMART SM00382 421 593 1.2E-19 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS00750 0e9214b2c12d8a582d401a473180e47a 133 TIGRFAM TIGR00586 mutt: mutator mutT protein 6 126 1.9E-29 T 23-04-2016 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 RPE_RS00750 0e9214b2c12d8a582d401a473180e47a 133 Gene3D G3DSA:3.90.79.10 6 126 8.5E-37 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS00750 0e9214b2c12d8a582d401a473180e47a 133 PRINTS PR00502 NUDIX hydrolase family signature 33 47 1.1E-8 T 23-04-2016 IPR020476 NUDIX hydrolase RPE_RS00750 0e9214b2c12d8a582d401a473180e47a 133 PRINTS PR00502 NUDIX hydrolase family signature 47 62 1.1E-8 T 23-04-2016 IPR020476 NUDIX hydrolase RPE_RS00750 0e9214b2c12d8a582d401a473180e47a 133 PANTHER PTHR22769:SF35 1 129 5.0E-34 T 23-04-2016 RPE_RS00750 0e9214b2c12d8a582d401a473180e47a 133 PANTHER PTHR22769 1 129 5.0E-34 T 23-04-2016 RPE_RS00750 0e9214b2c12d8a582d401a473180e47a 133 Pfam PF00293 NUDIX domain 6 126 3.8E-20 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RPE_RS00750 0e9214b2c12d8a582d401a473180e47a 133 SUPERFAMILY SSF55811 2 128 1.35E-40 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS00750 0e9214b2c12d8a582d401a473180e47a 133 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 23-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RPE_RS14245 c3c21e39b252205025651a32bd05516c 234 Pfam PF13545 Crp-like helix-turn-helix domain 152 214 1.4E-13 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RPE_RS14245 c3c21e39b252205025651a32bd05516c 234 SUPERFAMILY SSF51206 22 147 1.28E-31 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like RPE_RS14245 c3c21e39b252205025651a32bd05516c 234 SUPERFAMILY SSF46785 150 212 1.24E-10 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS14245 c3c21e39b252205025651a32bd05516c 234 PANTHER PTHR24567:SF37 16 210 1.6E-57 T 23-04-2016 RPE_RS14245 c3c21e39b252205025651a32bd05516c 234 Pfam PF00027 Cyclic nucleotide-binding domain 33 118 9.8E-22 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RPE_RS14245 c3c21e39b252205025651a32bd05516c 234 SMART SM00100 12 131 6.0E-18 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RPE_RS14245 c3c21e39b252205025651a32bd05516c 234 Gene3D G3DSA:1.10.10.10 150 212 2.6E-14 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS14245 c3c21e39b252205025651a32bd05516c 234 Gene3D G3DSA:2.60.120.10 22 142 3.5E-28 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS14245 c3c21e39b252205025651a32bd05516c 234 SMART SM00419 168 215 5.6E-5 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RPE_RS14245 c3c21e39b252205025651a32bd05516c 234 PANTHER PTHR24567 16 210 1.6E-57 T 23-04-2016 RPE_RS15290 bcc0b29d9669df87244d96edfb60ee83 540 PRINTS PR00315 GTP-binding elongation factor signature 26 39 6.2E-12 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS15290 bcc0b29d9669df87244d96edfb60ee83 540 PRINTS PR00315 GTP-binding elongation factor signature 76 84 6.2E-12 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS15290 bcc0b29d9669df87244d96edfb60ee83 540 PRINTS PR00315 GTP-binding elongation factor signature 148 157 6.2E-12 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS15290 bcc0b29d9669df87244d96edfb60ee83 540 PRINTS PR00315 GTP-binding elongation factor signature 112 123 6.2E-12 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS15290 bcc0b29d9669df87244d96edfb60ee83 540 PRINTS PR00315 GTP-binding elongation factor signature 96 106 6.2E-12 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS15290 bcc0b29d9669df87244d96edfb60ee83 540 SUPERFAMILY SSF54980 400 471 2.34E-12 T 23-04-2016 IPR009022 Elongation factor G, III-V domain RPE_RS15290 bcc0b29d9669df87244d96edfb60ee83 540 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 18 534 1.9E-202 T 23-04-2016 IPR004548 Peptide chain release factor 3 GO:0005525|GO:0005737|GO:0006415|GO:0016149 RPE_RS15290 bcc0b29d9669df87244d96edfb60ee83 540 Gene3D G3DSA:3.30.70.870 402 470 1.7E-10 T 23-04-2016 RPE_RS15290 bcc0b29d9669df87244d96edfb60ee83 540 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 15 534 49.551 T 23-04-2016 IPR004548 Peptide chain release factor 3 GO:0005525|GO:0005737|GO:0006415|GO:0016149 RPE_RS15290 bcc0b29d9669df87244d96edfb60ee83 540 SUPERFAMILY SSF50447 269 400 7.3E-27 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain RPE_RS15290 bcc0b29d9669df87244d96edfb60ee83 540 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 69 84 - T 23-04-2016 IPR031157 Tr-type G domain, conserved site RPE_RS15290 bcc0b29d9669df87244d96edfb60ee83 540 Pfam PF16658 Class II release factor RF3, C-terminal domain 394 521 1.9E-40 T 23-04-2016 IPR032090 Peptide chain release factor 3, C-terminal RPE_RS15290 bcc0b29d9669df87244d96edfb60ee83 540 Gene3D G3DSA:2.40.30.10 300 401 2.6E-22 T 23-04-2016 RPE_RS15290 bcc0b29d9669df87244d96edfb60ee83 540 SUPERFAMILY SSF52540 21 284 6.86E-82 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15290 bcc0b29d9669df87244d96edfb60ee83 540 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 27 164 7.6E-22 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RPE_RS15290 bcc0b29d9669df87244d96edfb60ee83 540 Pfam PF00009 Elongation factor Tu GTP binding domain 24 284 1.3E-47 T 23-04-2016 RPE_RS15290 bcc0b29d9669df87244d96edfb60ee83 540 PANTHER PTHR23115:SF69 7 195 3.6E-217 T 23-04-2016 RPE_RS15290 bcc0b29d9669df87244d96edfb60ee83 540 PANTHER PTHR23115:SF69 258 471 3.6E-217 T 23-04-2016 RPE_RS15290 bcc0b29d9669df87244d96edfb60ee83 540 PANTHER PTHR23115 7 195 3.6E-217 T 23-04-2016 RPE_RS15290 bcc0b29d9669df87244d96edfb60ee83 540 PANTHER PTHR23115 258 471 3.6E-217 T 23-04-2016 RPE_RS15290 bcc0b29d9669df87244d96edfb60ee83 540 Pfam PF03144 Elongation factor Tu domain 2 321 387 6.3E-8 T 23-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RPE_RS15290 bcc0b29d9669df87244d96edfb60ee83 540 Gene3D G3DSA:3.40.50.300 20 289 2.9E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS20750 68dbecdb15228ed52c4c7d42ed68b260 158 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 5 155 2.3E-51 T 23-04-2016 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC RPE_RS20750 68dbecdb15228ed52c4c7d42ed68b260 158 PANTHER PTHR30411 5 154 2.8E-53 T 23-04-2016 RPE_RS20750 68dbecdb15228ed52c4c7d42ed68b260 158 PANTHER PTHR30411:SF0 5 154 2.8E-53 T 23-04-2016 RPE_RS20750 68dbecdb15228ed52c4c7d42ed68b260 158 PIRSF PIRSF006181 1 158 3.9E-49 T 23-04-2016 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC RPE_RS20750 68dbecdb15228ed52c4c7d42ed68b260 158 Gene3D G3DSA:3.90.960.10 3 156 8.7E-54 T 23-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 RPE_RS20750 68dbecdb15228ed52c4c7d42ed68b260 158 SUPERFAMILY SSF55826 5 154 1.28E-44 T 23-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 RPE_RS20750 68dbecdb15228ed52c4c7d42ed68b260 158 Pfam PF04073 Aminoacyl-tRNA editing domain 27 143 1.6E-24 T 23-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 RPE_RS06085 796d26da816d1eda7ea8a3d04b463d89 218 Gene3D G3DSA:3.30.565.10 86 198 7.4E-4 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS06085 796d26da816d1eda7ea8a3d04b463d89 218 Pfam PF13581 Histidine kinase-like ATPase domain 70 212 4.8E-12 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS06085 796d26da816d1eda7ea8a3d04b463d89 218 SUPERFAMILY SSF55874 145 201 1.05E-5 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS06085 796d26da816d1eda7ea8a3d04b463d89 218 SUPERFAMILY SSF55874 90 112 1.05E-5 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS08915 27fc50f5b3a21ee82086b7267bd4274a 262 PANTHER PTHR24322:SF330 157 189 3.4E-54 T 23-04-2016 RPE_RS08915 27fc50f5b3a21ee82086b7267bd4274a 262 PANTHER PTHR24322:SF330 11 141 3.4E-54 T 23-04-2016 RPE_RS08915 27fc50f5b3a21ee82086b7267bd4274a 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.7E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS08915 27fc50f5b3a21ee82086b7267bd4274a 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 2.7E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS08915 27fc50f5b3a21ee82086b7267bd4274a 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 2.7E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS08915 27fc50f5b3a21ee82086b7267bd4274a 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 2.7E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS08915 27fc50f5b3a21ee82086b7267bd4274a 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 2.7E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS08915 27fc50f5b3a21ee82086b7267bd4274a 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 223 243 2.7E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS08915 27fc50f5b3a21ee82086b7267bd4274a 262 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RPE_RS08915 27fc50f5b3a21ee82086b7267bd4274a 262 Gene3D G3DSA:3.40.50.720 2 261 1.7E-79 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS08915 27fc50f5b3a21ee82086b7267bd4274a 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 1.9E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS08915 27fc50f5b3a21ee82086b7267bd4274a 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 1.9E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS08915 27fc50f5b3a21ee82086b7267bd4274a 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 1.9E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS08915 27fc50f5b3a21ee82086b7267bd4274a 262 TIGRFAM TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase 7 261 2.7E-112 T 23-04-2016 IPR011294 3-hydroxybutyrate dehydrogenase GO:0003858|GO:0055114 RPE_RS08915 27fc50f5b3a21ee82086b7267bd4274a 262 SUPERFAMILY SSF51735 6 261 2.7E-77 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS08915 27fc50f5b3a21ee82086b7267bd4274a 262 PANTHER PTHR24322 157 189 3.4E-54 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS08915 27fc50f5b3a21ee82086b7267bd4274a 262 PANTHER PTHR24322 11 141 3.4E-54 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS08915 27fc50f5b3a21ee82086b7267bd4274a 262 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 260 1.8E-57 T 23-04-2016 RPE_RS21155 73350c6fc64a318c3889b643e914c71b 484 Gene3D G3DSA:3.40.309.10 263 450 4.5E-62 T 23-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RPE_RS21155 73350c6fc64a318c3889b643e914c71b 484 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 249 256 - T 23-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 RPE_RS21155 73350c6fc64a318c3889b643e914c71b 484 SUPERFAMILY SSF53720 10 482 1.1E-152 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RPE_RS21155 73350c6fc64a318c3889b643e914c71b 484 Pfam PF00171 Aldehyde dehydrogenase family 22 476 1.4E-154 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RPE_RS21155 73350c6fc64a318c3889b643e914c71b 484 PANTHER PTHR11699 5 483 1.1E-195 T 23-04-2016 RPE_RS21155 73350c6fc64a318c3889b643e914c71b 484 Gene3D G3DSA:3.40.605.10 10 262 3.5E-90 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RPE_RS21155 73350c6fc64a318c3889b643e914c71b 484 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 277 288 - T 23-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 RPE_RS00795 bd055e08d1edbdcdd5ab108b33ce9723 417 Pfam PF00696 Amino acid kinase family 3 231 5.3E-45 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RPE_RS00795 bd055e08d1edbdcdd5ab108b33ce9723 417 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 4 412 5.5E-124 T 23-04-2016 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RPE_RS00795 bd055e08d1edbdcdd5ab108b33ce9723 417 Gene3D G3DSA:3.40.1160.10 1 258 1.7E-72 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RPE_RS00795 bd055e08d1edbdcdd5ab108b33ce9723 417 PANTHER PTHR21499:SF27 1 416 3.0E-156 T 23-04-2016 RPE_RS00795 bd055e08d1edbdcdd5ab108b33ce9723 417 Pfam PF13840 ACT domain 347 409 5.8E-13 T 23-04-2016 IPR027795 GATS-like ACT domain RPE_RS00795 bd055e08d1edbdcdd5ab108b33ce9723 417 SUPERFAMILY SSF55021 258 337 8.89E-20 T 23-04-2016 RPE_RS00795 bd055e08d1edbdcdd5ab108b33ce9723 417 SUPERFAMILY SSF55021 343 415 6.79E-20 T 23-04-2016 RPE_RS00795 bd055e08d1edbdcdd5ab108b33ce9723 417 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 63 412 3.0E-111 T 23-04-2016 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RPE_RS00795 bd055e08d1edbdcdd5ab108b33ce9723 417 PIRSF PIRSF000726 60 417 1.8E-124 T 23-04-2016 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RPE_RS00795 bd055e08d1edbdcdd5ab108b33ce9723 417 PANTHER PTHR21499 1 416 3.0E-156 T 23-04-2016 RPE_RS00795 bd055e08d1edbdcdd5ab108b33ce9723 417 Gene3D G3DSA:3.30.70.260 281 339 7.1E-4 T 23-04-2016 RPE_RS00795 bd055e08d1edbdcdd5ab108b33ce9723 417 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 23-04-2016 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RPE_RS00795 bd055e08d1edbdcdd5ab108b33ce9723 417 Pfam PF01842 ACT domain 276 333 1.6E-12 T 23-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 RPE_RS00795 bd055e08d1edbdcdd5ab108b33ce9723 417 SUPERFAMILY SSF53633 3 254 6.28E-69 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RPE_RS00030 b487cdd2fc546f5e9493784936f03faa 332 SMART SM00911 143 219 1.2E-14 T 23-04-2016 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 RPE_RS00030 b487cdd2fc546f5e9493784936f03faa 332 SUPERFAMILY SSF55874 216 275 1.49E-5 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS00030 b487cdd2fc546f5e9493784936f03faa 332 PANTHER PTHR41523 27 327 8.7E-30 T 23-04-2016 RPE_RS00030 b487cdd2fc546f5e9493784936f03faa 332 Pfam PF13493 Domain of unknown function (DUF4118) 29 125 3.8E-6 T 23-04-2016 IPR025201 Sensor protein KdpD, transmembrane domain RPE_RS00030 b487cdd2fc546f5e9493784936f03faa 332 Pfam PF07536 HWE histidine kinase 143 218 1.5E-6 T 23-04-2016 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 RPE_RS17490 594068de5e5015ba8e1889cfb0b7cfe9 532 SUPERFAMILY SSF53738 207 306 3.34E-27 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS17490 594068de5e5015ba8e1889cfb0b7cfe9 532 PANTHER PTHR22573 37 529 2.7E-177 T 23-04-2016 RPE_RS17490 594068de5e5015ba8e1889cfb0b7cfe9 532 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 60 186 1.5E-26 T 23-04-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS17490 594068de5e5015ba8e1889cfb0b7cfe9 532 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 311 423 1.7E-16 T 23-04-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS17490 594068de5e5015ba8e1889cfb0b7cfe9 532 SUPERFAMILY SSF55957 423 521 5.23E-15 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS17490 594068de5e5015ba8e1889cfb0b7cfe9 532 SUPERFAMILY SSF53738 311 420 1.73E-17 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS17490 594068de5e5015ba8e1889cfb0b7cfe9 532 PANTHER PTHR22573:SF28 37 529 2.7E-177 T 23-04-2016 RPE_RS17490 594068de5e5015ba8e1889cfb0b7cfe9 532 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 437 515 1.8E-6 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS17490 594068de5e5015ba8e1889cfb0b7cfe9 532 Gene3D G3DSA:3.30.310.50 425 520 2.6E-19 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS17490 594068de5e5015ba8e1889cfb0b7cfe9 532 Gene3D G3DSA:3.40.120.10 302 423 4.3E-27 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS17490 594068de5e5015ba8e1889cfb0b7cfe9 532 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 222 241 2.77E-12 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS17490 594068de5e5015ba8e1889cfb0b7cfe9 532 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 256 269 2.77E-12 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS17490 594068de5e5015ba8e1889cfb0b7cfe9 532 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 285 300 2.77E-12 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS17490 594068de5e5015ba8e1889cfb0b7cfe9 532 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 148 162 2.77E-12 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS17490 594068de5e5015ba8e1889cfb0b7cfe9 532 SUPERFAMILY SSF53738 54 188 8.63E-31 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS17490 594068de5e5015ba8e1889cfb0b7cfe9 532 Gene3D G3DSA:3.40.120.10 59 185 1.6E-25 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS17490 594068de5e5015ba8e1889cfb0b7cfe9 532 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 209 305 2.2E-25 T 23-04-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS17490 594068de5e5015ba8e1889cfb0b7cfe9 532 Gene3D G3DSA:3.40.120.10 224 301 7.3E-27 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS19555 721a309c2876bab991c9460e0ce34264 148 PANTHER PTHR35526:SF1 16 146 1.5E-15 T 23-04-2016 RPE_RS19555 721a309c2876bab991c9460e0ce34264 148 Gene3D G3DSA:3.30.565.10 20 133 1.4E-4 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS19555 721a309c2876bab991c9460e0ce34264 148 SUPERFAMILY SSF55874 41 135 1.05E-7 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS19555 721a309c2876bab991c9460e0ce34264 148 PANTHER PTHR35526 16 146 1.5E-15 T 23-04-2016 RPE_RS19555 721a309c2876bab991c9460e0ce34264 148 Pfam PF13581 Histidine kinase-like ATPase domain 17 139 1.1E-25 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS00225 0709f8db6f87ad62a77a1c6340a52c0b 295 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 110 131 7.0E-81 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RPE_RS00225 0709f8db6f87ad62a77a1c6340a52c0b 295 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 155 175 7.0E-81 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RPE_RS00225 0709f8db6f87ad62a77a1c6340a52c0b 295 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 34 56 7.0E-81 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RPE_RS00225 0709f8db6f87ad62a77a1c6340a52c0b 295 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 261 279 7.0E-81 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RPE_RS00225 0709f8db6f87ad62a77a1c6340a52c0b 295 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 75 102 7.0E-81 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RPE_RS00225 0709f8db6f87ad62a77a1c6340a52c0b 295 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 244 260 7.0E-81 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RPE_RS00225 0709f8db6f87ad62a77a1c6340a52c0b 295 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 204 233 7.0E-81 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RPE_RS00225 0709f8db6f87ad62a77a1c6340a52c0b 295 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 76 101 - T 23-04-2016 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RPE_RS00225 0709f8db6f87ad62a77a1c6340a52c0b 295 Gene3D G3DSA:3.40.50.720 142 269 1.4E-51 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS00225 0709f8db6f87ad62a77a1c6340a52c0b 295 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 121 4.7E-40 T 23-04-2016 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RPE_RS00225 0709f8db6f87ad62a77a1c6340a52c0b 295 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 288 37.839 T 23-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RPE_RS00225 0709f8db6f87ad62a77a1c6340a52c0b 295 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 124 285 7.2E-64 T 23-04-2016 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RPE_RS00225 0709f8db6f87ad62a77a1c6340a52c0b 295 PANTHER PTHR10025 1 295 5.9E-156 T 23-04-2016 RPE_RS00225 0709f8db6f87ad62a77a1c6340a52c0b 295 Gene3D G3DSA:3.40.192.10 7 141 1.7E-47 T 23-04-2016 RPE_RS00225 0709f8db6f87ad62a77a1c6340a52c0b 295 SUPERFAMILY SSF51735 123 284 8.21E-47 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS00225 0709f8db6f87ad62a77a1c6340a52c0b 295 SUPERFAMILY SSF53223 1 122 9.02E-41 T 23-04-2016 RPE_RS18970 0c2f19d585b96575181a42334a26393b 247 PANTHER PTHR13696 1 218 3.2E-66 T 23-04-2016 RPE_RS18970 0c2f19d585b96575181a42334a26393b 247 PANTHER PTHR13696:SF66 1 218 3.2E-66 T 23-04-2016 RPE_RS18970 0c2f19d585b96575181a42334a26393b 247 SUPERFAMILY SSF52540 1 211 2.51E-33 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18970 0c2f19d585b96575181a42334a26393b 247 PIRSF PIRSF009320 1 218 1.5E-53 T 23-04-2016 RPE_RS18970 0c2f19d585b96575181a42334a26393b 247 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 4 140 2.7E-17 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain RPE_RS18970 0c2f19d585b96575181a42334a26393b 247 Gene3D G3DSA:3.40.50.300 3 210 5.0E-26 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS24050 e34c927b030a119f54aa13c5c23701fa 629 Gene3D G3DSA:3.40.50.300 37 207 4.7E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS24050 e34c927b030a119f54aa13c5c23701fa 629 Pfam PF13177 DNA polymerase III, delta subunit 56 220 1.7E-31 T 23-04-2016 RPE_RS24050 e34c927b030a119f54aa13c5c23701fa 629 PANTHER PTHR11669 24 452 1.3E-170 T 23-04-2016 RPE_RS24050 e34c927b030a119f54aa13c5c23701fa 629 SUPERFAMILY SSF52540 69 267 6.17E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS24050 e34c927b030a119f54aa13c5c23701fa 629 SUPERFAMILY SSF48019 285 411 3.15E-28 T 23-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 RPE_RS24050 e34c927b030a119f54aa13c5c23701fa 629 Pfam PF12362 DNA polymerase III gamma and tau subunits C terminal 488 600 1.4E-37 T 23-04-2016 IPR022107 DNA polymerase III, subunit gamma/ tau, C-terminal RPE_RS24050 e34c927b030a119f54aa13c5c23701fa 629 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 39 400 1.1E-121 T 23-04-2016 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 RPE_RS24050 e34c927b030a119f54aa13c5c23701fa 629 Gene3D G3DSA:1.20.272.10 285 401 1.3E-22 T 23-04-2016 RPE_RS24050 e34c927b030a119f54aa13c5c23701fa 629 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 274 416 7.4E-53 T 23-04-2016 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 RPE_RS24050 e34c927b030a119f54aa13c5c23701fa 629 PANTHER PTHR11669:SF0 24 452 1.3E-170 T 23-04-2016 RPE_RS24050 e34c927b030a119f54aa13c5c23701fa 629 SMART SM00382 73 221 1.9E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS24050 e34c927b030a119f54aa13c5c23701fa 629 Gene3D G3DSA:1.10.8.60 208 284 9.4E-32 T 23-04-2016 RPE_RS18280 eb64a6827a12730b5c5e051baf0c97ea 2843 PANTHER PTHR37469 79 1759 0.0 T 23-04-2016 RPE_RS18280 eb64a6827a12730b5c5e051baf0c97ea 2843 PANTHER PTHR37469 1775 2794 0.0 T 23-04-2016 RPE_RS18280 eb64a6827a12730b5c5e051baf0c97ea 2843 SUPERFAMILY SSF48208 2307 2809 2.99E-98 T 23-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 RPE_RS18280 eb64a6827a12730b5c5e051baf0c97ea 2843 PANTHER PTHR37469:SF2 79 1759 0.0 T 23-04-2016 RPE_RS18280 eb64a6827a12730b5c5e051baf0c97ea 2843 PANTHER PTHR37469:SF2 1775 2794 0.0 T 23-04-2016 RPE_RS18280 eb64a6827a12730b5c5e051baf0c97ea 2843 Pfam PF06165 Glycosyltransferase family 36 2062 2302 1.8E-80 T 23-04-2016 IPR010383 Glycosyl hydrolase 94 RPE_RS18280 eb64a6827a12730b5c5e051baf0c97ea 2843 Pfam PF06165 Glycosyltransferase family 36 1557 1804 1.3E-70 T 23-04-2016 IPR010383 Glycosyl hydrolase 94 RPE_RS18280 eb64a6827a12730b5c5e051baf0c97ea 2843 SMART SM01068 2039 2104 7.6E-33 T 23-04-2016 IPR009342 Putative carbohydrate binding domain RPE_RS18280 eb64a6827a12730b5c5e051baf0c97ea 2843 SMART SM01068 1533 1594 2.9E-23 T 23-04-2016 IPR009342 Putative carbohydrate binding domain RPE_RS18280 eb64a6827a12730b5c5e051baf0c97ea 2843 Gene3D G3DSA:2.60.420.10 2751 2809 1.7E-8 T 23-04-2016 RPE_RS18280 eb64a6827a12730b5c5e051baf0c97ea 2843 Gene3D G3DSA:2.70.98.40 1555 1840 7.7E-90 T 23-04-2016 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 RPE_RS18280 eb64a6827a12730b5c5e051baf0c97ea 2843 Gene3D G3DSA:2.70.98.40 2039 2361 1.8E-96 T 23-04-2016 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 RPE_RS18280 eb64a6827a12730b5c5e051baf0c97ea 2843 Pfam PF10091 Putative glucoamylase 1299 1505 1.9E-13 T 23-04-2016 IPR019282 Domain of unknown function DUF2329 RPE_RS18280 eb64a6827a12730b5c5e051baf0c97ea 2843 SUPERFAMILY SSF74650 2039 2304 2.04E-88 T 23-04-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 RPE_RS18280 eb64a6827a12730b5c5e051baf0c97ea 2843 Pfam PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain 2332 2758 1.5E-121 T 23-04-2016 IPR033432 Glycosyl hydrolase 36, catalytic domain RPE_RS18280 eb64a6827a12730b5c5e051baf0c97ea 2843 SUPERFAMILY SSF74650 1552 1808 3.04E-74 T 23-04-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 RPE_RS20510 41fd61a0543d124c288a2418f9a314f6 495 PANTHER PTHR32071 1 495 3.2E-198 T 23-04-2016 RPE_RS20510 41fd61a0543d124c288a2418f9a314f6 495 SUPERFAMILY SSF46689 434 483 1.37E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS20510 41fd61a0543d124c288a2418f9a314f6 495 SUPERFAMILY SSF46689 359 402 1.37E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS20510 41fd61a0543d124c288a2418f9a314f6 495 SUPERFAMILY SSF52172 4 190 6.26E-39 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS20510 41fd61a0543d124c288a2418f9a314f6 495 Gene3D G3DSA:1.10.8.60 319 393 6.8E-26 T 23-04-2016 RPE_RS20510 41fd61a0543d124c288a2418f9a314f6 495 Pfam PF00072 Response regulator receiver domain 5 116 2.3E-25 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS20510 41fd61a0543d124c288a2418f9a314f6 495 Gene3D G3DSA:3.40.50.300 143 318 4.3E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS20510 41fd61a0543d124c288a2418f9a314f6 495 Gene3D G3DSA:3.40.50.2300 4 138 4.4E-32 T 23-04-2016 RPE_RS20510 41fd61a0543d124c288a2418f9a314f6 495 Pfam PF02954 Bacterial regulatory protein, Fis family 444 482 6.3E-9 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RPE_RS20510 41fd61a0543d124c288a2418f9a314f6 495 SMART SM00448 3 117 1.4E-29 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS20510 41fd61a0543d124c288a2418f9a314f6 495 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 359 368 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site RPE_RS20510 41fd61a0543d124c288a2418f9a314f6 495 SUPERFAMILY SSF52540 145 388 6.44E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS20510 41fd61a0543d124c288a2418f9a314f6 495 Pfam PF00158 Sigma-54 interaction domain 147 312 3.2E-66 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RPE_RS20510 41fd61a0543d124c288a2418f9a314f6 495 PANTHER PTHR32071:SF18 1 495 3.2E-198 T 23-04-2016 RPE_RS20510 41fd61a0543d124c288a2418f9a314f6 495 SMART SM00382 166 313 5.0E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS20510 41fd61a0543d124c288a2418f9a314f6 495 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 232 247 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RPE_RS20510 41fd61a0543d124c288a2418f9a314f6 495 Gene3D G3DSA:1.10.10.60 439 481 2.9E-13 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS11130 c738aeca6fe15f101c3de40cb45280e3 447 TIGRFAM TIGR00379 cobB: cobyrinic acid a,c-diamide synthase 13 443 1.7E-97 T 23-04-2016 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 RPE_RS11130 c738aeca6fe15f101c3de40cb45280e3 447 PANTHER PTHR21343 11 439 1.0E-140 T 23-04-2016 RPE_RS11130 c738aeca6fe15f101c3de40cb45280e3 447 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 13 182 9.2E-23 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain RPE_RS11130 c738aeca6fe15f101c3de40cb45280e3 447 Hamap MF_00027 Cobyrinate a,c-diamide synthase [cbiA]. 10 445 40.91 T 23-04-2016 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 RPE_RS11130 c738aeca6fe15f101c3de40cb45280e3 447 Gene3D G3DSA:3.40.50.300 11 205 1.9E-23 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS11130 c738aeca6fe15f101c3de40cb45280e3 447 PANTHER PTHR21343:SF6 11 439 1.0E-140 T 23-04-2016 RPE_RS11130 c738aeca6fe15f101c3de40cb45280e3 447 SUPERFAMILY SSF52540 12 206 1.29E-42 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS11130 c738aeca6fe15f101c3de40cb45280e3 447 SUPERFAMILY SSF52317 253 440 3.88E-25 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RPE_RS11130 c738aeca6fe15f101c3de40cb45280e3 447 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 254 440 2.5E-29 T 23-04-2016 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 UniPathway: UPA00148 RPE_RS11130 c738aeca6fe15f101c3de40cb45280e3 447 Gene3D G3DSA:3.40.50.880 257 439 1.8E-18 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RPE_RS12675 234ec6f2d03100c0614a4cbcb7ad35ab 249 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 27 172 2.5E-52 T 23-04-2016 RPE_RS12675 234ec6f2d03100c0614a4cbcb7ad35ab 249 PANTHER PTHR10371 16 201 6.3E-82 T 23-04-2016 RPE_RS12675 234ec6f2d03100c0614a4cbcb7ad35ab 249 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 131 149 - T 23-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 RPE_RS12675 234ec6f2d03100c0614a4cbcb7ad35ab 249 SUPERFAMILY SSF52833 18 190 5.26E-52 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS12675 234ec6f2d03100c0614a4cbcb7ad35ab 249 Gene3D G3DSA:3.40.30.10 94 171 3.0E-10 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS12675 234ec6f2d03100c0614a4cbcb7ad35ab 249 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 26 171 4.1E-50 T 23-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 RPE_RS08445 a65c4a3f0dbf7816e8f1a64209c8a999 405 PANTHER PTHR22912:SF180 5 382 3.9E-109 T 23-04-2016 RPE_RS08445 a65c4a3f0dbf7816e8f1a64209c8a999 405 Gene3D G3DSA:3.50.50.60 4 108 1.6E-31 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS08445 a65c4a3f0dbf7816e8f1a64209c8a999 405 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 145 163 1.1E-24 T 23-04-2016 RPE_RS08445 a65c4a3f0dbf7816e8f1a64209c8a999 405 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 231 247 1.1E-24 T 23-04-2016 RPE_RS08445 a65c4a3f0dbf7816e8f1a64209c8a999 405 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 256 278 1.1E-24 T 23-04-2016 RPE_RS08445 a65c4a3f0dbf7816e8f1a64209c8a999 405 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 1.1E-24 T 23-04-2016 RPE_RS08445 a65c4a3f0dbf7816e8f1a64209c8a999 405 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 100 118 1.1E-24 T 23-04-2016 RPE_RS08445 a65c4a3f0dbf7816e8f1a64209c8a999 405 PANTHER PTHR22912 5 382 3.9E-109 T 23-04-2016 RPE_RS08445 a65c4a3f0dbf7816e8f1a64209c8a999 405 SUPERFAMILY SSF55424 315 404 8.24E-27 T 23-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 RPE_RS08445 a65c4a3f0dbf7816e8f1a64209c8a999 405 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 145 170 1.5E-16 T 23-04-2016 RPE_RS08445 a65c4a3f0dbf7816e8f1a64209c8a999 405 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 363 378 1.5E-16 T 23-04-2016 RPE_RS08445 a65c4a3f0dbf7816e8f1a64209c8a999 405 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 271 278 1.5E-16 T 23-04-2016 RPE_RS08445 a65c4a3f0dbf7816e8f1a64209c8a999 405 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 232 246 1.5E-16 T 23-04-2016 RPE_RS08445 a65c4a3f0dbf7816e8f1a64209c8a999 405 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 1.5E-16 T 23-04-2016 RPE_RS08445 a65c4a3f0dbf7816e8f1a64209c8a999 405 SUPERFAMILY SSF51905 142 310 5.4E-32 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS08445 a65c4a3f0dbf7816e8f1a64209c8a999 405 Pfam PF14759 Reductase C-terminal 320 403 3.2E-29 T 23-04-2016 IPR028202 Reductase, C-terminal RPE_RS08445 a65c4a3f0dbf7816e8f1a64209c8a999 405 Gene3D G3DSA:3.50.50.60 109 309 5.6E-47 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS08445 a65c4a3f0dbf7816e8f1a64209c8a999 405 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 301 2.9E-65 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS08445 a65c4a3f0dbf7816e8f1a64209c8a999 405 SUPERFAMILY SSF51905 4 191 1.09E-47 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS08445 a65c4a3f0dbf7816e8f1a64209c8a999 405 Gene3D G3DSA:3.30.390.30 320 404 3.4E-28 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RPE_RS05545 084f7db44754eb07fd6dd0e417272f1f 401 Gene3D G3DSA:3.90.550.10 50 274 4.1E-12 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS05545 084f7db44754eb07fd6dd0e417272f1f 401 PANTHER PTHR10859 32 395 3.7E-62 T 23-04-2016 RPE_RS05545 084f7db44754eb07fd6dd0e417272f1f 401 PANTHER PTHR10859:SF96 32 395 3.7E-62 T 23-04-2016 RPE_RS05545 084f7db44754eb07fd6dd0e417272f1f 401 SUPERFAMILY SSF53448 48 286 7.31E-27 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS05545 084f7db44754eb07fd6dd0e417272f1f 401 Pfam PF13641 Glycosyltransferase like family 2 50 270 2.2E-17 T 23-04-2016 RPE_RS12815 4a23cf1ada3277a597fc68ba6d0d215e 238 SUPERFAMILY SSF53633 5 236 6.41E-64 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RPE_RS12815 4a23cf1ada3277a597fc68ba6d0d215e 238 PANTHER PTHR21499:SF23 3 238 4.5E-93 T 23-04-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 RPE_RS12815 4a23cf1ada3277a597fc68ba6d0d215e 238 PIRSF PIRSF005650 1 238 1.1E-84 T 23-04-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 RPE_RS12815 4a23cf1ada3277a597fc68ba6d0d215e 238 PANTHER PTHR21499 3 238 4.5E-93 T 23-04-2016 RPE_RS12815 4a23cf1ada3277a597fc68ba6d0d215e 238 Pfam PF00696 Amino acid kinase family 8 216 1.2E-31 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RPE_RS12815 4a23cf1ada3277a597fc68ba6d0d215e 238 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 6 236 1.0E-85 T 23-04-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 RPE_RS12815 4a23cf1ada3277a597fc68ba6d0d215e 238 Gene3D G3DSA:3.40.1160.10 3 236 1.8E-76 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RPE_RS12815 4a23cf1ada3277a597fc68ba6d0d215e 238 Hamap MF_01220_B Uridylate kinase [pyrH]. 4 237 39.144 T 23-04-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 RPE_RS00135 74c7aba0fe6da379fd67908669d10611 449 SUPERFAMILY SSF48013 17 163 1.8E-24 T 23-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RPE_RS00135 74c7aba0fe6da379fd67908669d10611 449 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 430 447 7.3E-24 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RPE_RS00135 74c7aba0fe6da379fd67908669d10611 449 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 256 266 7.3E-24 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RPE_RS00135 74c7aba0fe6da379fd67908669d10611 449 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 318 330 7.3E-24 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RPE_RS00135 74c7aba0fe6da379fd67908669d10611 449 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 368 384 7.3E-24 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RPE_RS00135 74c7aba0fe6da379fd67908669d10611 449 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 227 241 7.3E-24 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RPE_RS00135 74c7aba0fe6da379fd67908669d10611 449 Gene3D G3DSA:3.40.50.150 237 448 5.8E-49 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS00135 74c7aba0fe6da379fd67908669d10611 449 SUPERFAMILY SSF53335 158 447 2.74E-63 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS00135 74c7aba0fe6da379fd67908669d10611 449 PANTHER PTHR22807 51 447 1.4E-85 T 23-04-2016 RPE_RS00135 74c7aba0fe6da379fd67908669d10611 449 Gene3D G3DSA:1.10.940.10 15 163 6.4E-32 T 23-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RPE_RS00135 74c7aba0fe6da379fd67908669d10611 449 PANTHER PTHR22807:SF30 51 447 1.4E-85 T 23-04-2016 RPE_RS00135 74c7aba0fe6da379fd67908669d10611 449 Pfam PF01189 16S rRNA methyltransferase RsmB/F 251 445 1.2E-48 T 23-04-2016 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RPE_RS00135 74c7aba0fe6da379fd67908669d10611 449 Pfam PF01029 NusB family 16 143 8.7E-18 T 23-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RPE_RS23250 65eb6777045d55c00a03e8b573471fe5 329 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 25 325 2.3E-35 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RPE_RS23250 65eb6777045d55c00a03e8b573471fe5 329 PANTHER PTHR30158 25 327 5.9E-64 T 23-04-2016 RPE_RS23250 65eb6777045d55c00a03e8b573471fe5 329 Gene3D G3DSA:2.40.50.100 155 188 7.5E-12 T 23-04-2016 RPE_RS23250 65eb6777045d55c00a03e8b573471fe5 329 Gene3D G3DSA:2.40.50.100 51 80 7.5E-12 T 23-04-2016 RPE_RS23250 65eb6777045d55c00a03e8b573471fe5 329 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 51 236 1.5E-14 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RPE_RS23250 65eb6777045d55c00a03e8b573471fe5 329 SUPERFAMILY SSF111369 39 249 8.37E-16 T 23-04-2016 RPE_RS03175 4d852ada1da1ab7bf9c743ace7f49d73 347 SUPERFAMILY SSF51412 5 336 4.19E-87 T 23-04-2016 RPE_RS03175 4d852ada1da1ab7bf9c743ace7f49d73 347 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 9 338 2.0E-65 T 23-04-2016 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 Reactome: REACT_1698 RPE_RS03175 4d852ada1da1ab7bf9c743ace7f49d73 347 Hamap MF_00596 GMP reductase [guaC]. 1 346 47.292 T 23-04-2016 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: REACT_1698 RPE_RS03175 4d852ada1da1ab7bf9c743ace7f49d73 347 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 172 184 - T 23-04-2016 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 Reactome: REACT_1698 RPE_RS03175 4d852ada1da1ab7bf9c743ace7f49d73 347 PANTHER PTHR11911:SF66 1 159 2.4E-154 T 23-04-2016 RPE_RS03175 4d852ada1da1ab7bf9c743ace7f49d73 347 PANTHER PTHR11911:SF66 177 347 2.4E-154 T 23-04-2016 RPE_RS03175 4d852ada1da1ab7bf9c743ace7f49d73 347 PANTHER PTHR11911 1 159 2.4E-154 T 23-04-2016 RPE_RS03175 4d852ada1da1ab7bf9c743ace7f49d73 347 PANTHER PTHR11911 177 347 2.4E-154 T 23-04-2016 RPE_RS03175 4d852ada1da1ab7bf9c743ace7f49d73 347 SMART SM01240 7 345 1.6E-95 T 23-04-2016 RPE_RS03175 4d852ada1da1ab7bf9c743ace7f49d73 347 PIRSF PIRSF000235 1 347 1.1E-166 T 23-04-2016 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: REACT_1698 RPE_RS03175 4d852ada1da1ab7bf9c743ace7f49d73 347 Gene3D G3DSA:3.20.20.70 6 343 9.3E-94 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS13430 df9e39ae8d322014692b194f21e146df 326 PRINTS PR00116 Arginase signature 106 121 3.5E-42 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RPE_RS13430 df9e39ae8d322014692b194f21e146df 326 PRINTS PR00116 Arginase signature 133 160 3.5E-42 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RPE_RS13430 df9e39ae8d322014692b194f21e146df 326 PRINTS PR00116 Arginase signature 271 285 3.5E-42 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RPE_RS13430 df9e39ae8d322014692b194f21e146df 326 PRINTS PR00116 Arginase signature 236 265 3.5E-42 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RPE_RS13430 df9e39ae8d322014692b194f21e146df 326 PRINTS PR00116 Arginase signature 187 205 3.5E-42 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RPE_RS13430 df9e39ae8d322014692b194f21e146df 326 ProSitePatterns PS01053 Arginase family signature. 239 260 - T 23-04-2016 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 Reactome: REACT_13 RPE_RS13430 df9e39ae8d322014692b194f21e146df 326 PIRSF PIRSF036979 5 315 1.9E-33 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RPE_RS13430 df9e39ae8d322014692b194f21e146df 326 Gene3D G3DSA:3.40.800.10 13 315 3.0E-78 T 23-04-2016 IPR023696 Ureohydrolase domain RPE_RS13430 df9e39ae8d322014692b194f21e146df 326 PANTHER PTHR11358 7 326 3.1E-104 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RPE_RS13430 df9e39ae8d322014692b194f21e146df 326 PANTHER PTHR11358:SF2 7 326 3.1E-104 T 23-04-2016 RPE_RS13430 df9e39ae8d322014692b194f21e146df 326 Pfam PF00491 Arginase family 14 309 2.5E-70 T 23-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 RPE_RS13430 df9e39ae8d322014692b194f21e146df 326 TIGRFAM TIGR01229 rocF_arginase: arginase 17 312 8.7E-82 T 23-04-2016 IPR014033 Arginase GO:0004053|GO:0006525|GO:0046872 KEGG: 00220+3.5.3.1|KEGG: 00330+3.5.3.1|MetaCyc: PWY-31|MetaCyc: PWY-4984|MetaCyc: PWY-6305|MetaCyc: PWY-6922|Reactome: REACT_13|UniPathway: UPA00158 RPE_RS13430 df9e39ae8d322014692b194f21e146df 326 SUPERFAMILY SSF52768 14 312 4.32E-81 T 23-04-2016 RPE_RS09740 42022d2759c37b7a52c531a04e412ef0 528 Gene3D G3DSA:2.40.10.10 74 209 5.8E-34 T 23-04-2016 RPE_RS09740 42022d2759c37b7a52c531a04e412ef0 528 Gene3D G3DSA:2.30.42.10 322 416 1.7E-29 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS09740 42022d2759c37b7a52c531a04e412ef0 528 SUPERFAMILY SSF50156 455 526 3.42E-14 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS09740 42022d2759c37b7a52c531a04e412ef0 528 PRINTS PR00834 HtrA/DegQ protease family signature 251 268 1.2E-55 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RPE_RS09740 42022d2759c37b7a52c531a04e412ef0 528 PRINTS PR00834 HtrA/DegQ protease family signature 359 371 1.2E-55 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RPE_RS09740 42022d2759c37b7a52c531a04e412ef0 528 PRINTS PR00834 HtrA/DegQ protease family signature 156 168 1.2E-55 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RPE_RS09740 42022d2759c37b7a52c531a04e412ef0 528 PRINTS PR00834 HtrA/DegQ protease family signature 217 241 1.2E-55 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RPE_RS09740 42022d2759c37b7a52c531a04e412ef0 528 PRINTS PR00834 HtrA/DegQ protease family signature 273 290 1.2E-55 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RPE_RS09740 42022d2759c37b7a52c531a04e412ef0 528 PRINTS PR00834 HtrA/DegQ protease family signature 177 197 1.2E-55 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RPE_RS09740 42022d2759c37b7a52c531a04e412ef0 528 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 75 522 2.2E-135 T 23-04-2016 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 RPE_RS09740 42022d2759c37b7a52c531a04e412ef0 528 Pfam PF13365 Trypsin-like peptidase domain 147 280 4.3E-32 T 23-04-2016 RPE_RS09740 42022d2759c37b7a52c531a04e412ef0 528 SUPERFAMILY SSF50156 277 402 4.73E-24 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS09740 42022d2759c37b7a52c531a04e412ef0 528 Gene3D G3DSA:2.40.10.10 213 321 1.1E-41 T 23-04-2016 RPE_RS09740 42022d2759c37b7a52c531a04e412ef0 528 SUPERFAMILY SSF50494 136 315 8.66E-61 T 23-04-2016 IPR009003 Peptidase S1, PA clan RPE_RS09740 42022d2759c37b7a52c531a04e412ef0 528 SUPERFAMILY SSF50494 72 96 8.66E-61 T 23-04-2016 IPR009003 Peptidase S1, PA clan RPE_RS09740 42022d2759c37b7a52c531a04e412ef0 528 Gene3D G3DSA:2.30.42.10 453 523 1.4E-15 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS09740 42022d2759c37b7a52c531a04e412ef0 528 PANTHER PTHR22939:SF79 15 95 2.3E-111 T 23-04-2016 RPE_RS09740 42022d2759c37b7a52c531a04e412ef0 528 PANTHER PTHR22939:SF79 129 414 2.3E-111 T 23-04-2016 RPE_RS09740 42022d2759c37b7a52c531a04e412ef0 528 SMART SM00228 319 401 1.6E-14 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS09740 42022d2759c37b7a52c531a04e412ef0 528 SMART SM00228 437 516 8.6E-9 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS09740 42022d2759c37b7a52c531a04e412ef0 528 Pfam PF13180 PDZ domain 437 519 3.1E-10 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS09740 42022d2759c37b7a52c531a04e412ef0 528 Pfam PF13180 PDZ domain 319 410 1.8E-17 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS09740 42022d2759c37b7a52c531a04e412ef0 528 PANTHER PTHR22939 15 95 2.3E-111 T 23-04-2016 RPE_RS09740 42022d2759c37b7a52c531a04e412ef0 528 PANTHER PTHR22939 129 414 2.3E-111 T 23-04-2016 RPE_RS07610 3ec1685f4b5dbc9eb36d8c7eb6526f65 292 SUPERFAMILY SSF51735 14 281 3.52E-34 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS07610 3ec1685f4b5dbc9eb36d8c7eb6526f65 292 PANTHER PTHR10366:SF466 14 244 4.8E-22 T 23-04-2016 RPE_RS07610 3ec1685f4b5dbc9eb36d8c7eb6526f65 292 PANTHER PTHR10366 14 244 4.8E-22 T 23-04-2016 RPE_RS07610 3ec1685f4b5dbc9eb36d8c7eb6526f65 292 Pfam PF01370 NAD dependent epimerase/dehydratase family 15 210 6.9E-20 T 23-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 RPE_RS07610 3ec1685f4b5dbc9eb36d8c7eb6526f65 292 Gene3D G3DSA:3.40.50.720 12 237 2.6E-26 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS05970 2b178fbf25c50e616fe8d5eff1504d70 88 Pfam PF01313 Bacterial export proteins, family 3 6 77 8.5E-26 T 23-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RPE_RS05970 2b178fbf25c50e616fe8d5eff1504d70 88 PANTHER PTHR34040 1 86 2.4E-28 T 23-04-2016 RPE_RS05970 2b178fbf25c50e616fe8d5eff1504d70 88 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 86 2.8E-27 T 23-04-2016 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 RPE_RS05970 2b178fbf25c50e616fe8d5eff1504d70 88 PIRSF PIRSF004669 1 88 1.8E-26 T 23-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RPE_RS05970 2b178fbf25c50e616fe8d5eff1504d70 88 PANTHER PTHR34040:SF2 1 86 2.4E-28 T 23-04-2016 RPE_RS05970 2b178fbf25c50e616fe8d5eff1504d70 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 1.3E-16 T 23-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RPE_RS05970 2b178fbf25c50e616fe8d5eff1504d70 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 1.3E-16 T 23-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RPE_RS05970 2b178fbf25c50e616fe8d5eff1504d70 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 1.3E-16 T 23-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RPE_RS24225 6552cec2e5116714ae05b2967a56a1dc 249 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 155 175 - T 23-04-2016 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 RPE_RS24225 6552cec2e5116714ae05b2967a56a1dc 249 PANTHER PTHR21294 1 249 5.5E-157 T 23-04-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 RPE_RS24225 6552cec2e5116714ae05b2967a56a1dc 249 PANTHER PTHR21294:SF8 1 249 5.5E-157 T 23-04-2016 RPE_RS24225 6552cec2e5116714ae05b2967a56a1dc 249 SMART SM00893 23 211 6.0E-69 T 23-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 RPE_RS24225 6552cec2e5116714ae05b2967a56a1dc 249 Gene3D G3DSA:3.40.50.620 1 246 1.1E-105 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS24225 6552cec2e5116714ae05b2967a56a1dc 249 SUPERFAMILY SSF52402 1 242 4.4E-87 T 23-04-2016 RPE_RS24225 6552cec2e5116714ae05b2967a56a1dc 249 PIRSF PIRSF000090 1 249 6.3E-87 T 23-04-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 RPE_RS24225 6552cec2e5116714ae05b2967a56a1dc 249 Pfam PF01012 Electron transfer flavoprotein domain 31 206 4.4E-47 T 23-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 RPE_RS09175 603944400824ab5f2a4b7e1ea0a506e9 390 PANTHER PTHR11014 1 390 2.4E-160 T 23-04-2016 RPE_RS09175 603944400824ab5f2a4b7e1ea0a506e9 390 PIRSF PIRSF005962 2 390 4.2E-130 T 23-04-2016 IPR017439 Amidohydrolase GO:0016787 RPE_RS09175 603944400824ab5f2a4b7e1ea0a506e9 390 PANTHER PTHR11014:SF63 1 390 2.4E-160 T 23-04-2016 RPE_RS09175 603944400824ab5f2a4b7e1ea0a506e9 390 SUPERFAMILY SSF55031 190 302 2.62E-32 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RPE_RS09175 603944400824ab5f2a4b7e1ea0a506e9 390 Pfam PF01546 Peptidase family M20/M25/M40 79 385 1.2E-40 T 23-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 RPE_RS09175 603944400824ab5f2a4b7e1ea0a506e9 390 Gene3D G3DSA:3.30.70.360 187 303 1.8E-43 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RPE_RS09175 603944400824ab5f2a4b7e1ea0a506e9 390 SUPERFAMILY SSF53187 304 388 1.89E-88 T 23-04-2016 RPE_RS09175 603944400824ab5f2a4b7e1ea0a506e9 390 SUPERFAMILY SSF53187 2 203 1.89E-88 T 23-04-2016 RPE_RS09175 603944400824ab5f2a4b7e1ea0a506e9 390 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 14 375 1.2E-114 T 23-04-2016 IPR017439 Amidohydrolase GO:0016787 RPE_RS09175 603944400824ab5f2a4b7e1ea0a506e9 390 Gene3D G3DSA:3.40.630.10 304 388 3.9E-101 T 23-04-2016 RPE_RS09175 603944400824ab5f2a4b7e1ea0a506e9 390 Gene3D G3DSA:3.40.630.10 3 184 3.9E-101 T 23-04-2016 RPE_RS09175 603944400824ab5f2a4b7e1ea0a506e9 390 Pfam PF07687 Peptidase dimerisation domain 192 283 1.7E-11 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RPE_RS15135 2dd90e1e407f5b63c440f1b13cc53e57 206 SUPERFAMILY SSF55136 22 203 6.8E-51 T 23-04-2016 IPR011256 Regulatory factor, effector binding domain RPE_RS15135 2dd90e1e407f5b63c440f1b13cc53e57 206 Pfam PF04832 SOUL heme-binding protein 26 202 1.9E-42 T 23-04-2016 IPR006917 SOUL haem-binding protein RPE_RS15135 2dd90e1e407f5b63c440f1b13cc53e57 206 PANTHER PTHR11220:SF35 26 204 1.2E-33 T 23-04-2016 RPE_RS15135 2dd90e1e407f5b63c440f1b13cc53e57 206 PANTHER PTHR11220 26 204 1.2E-33 T 23-04-2016 IPR006917 SOUL haem-binding protein RPE_RS05805 c7bffd3a2f0e8091e0acedfa5560c022 165 Gene3D G3DSA:3.40.630.30 30 144 9.1E-13 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS05805 c7bffd3a2f0e8091e0acedfa5560c022 165 SUPERFAMILY SSF55729 39 146 1.08E-12 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS05805 c7bffd3a2f0e8091e0acedfa5560c022 165 PANTHER PTHR36449 1 165 6.1E-35 T 23-04-2016 RPE_RS05805 c7bffd3a2f0e8091e0acedfa5560c022 165 Pfam PF00583 Acetyltransferase (GNAT) family 49 142 1.5E-8 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RPE_RS14615 6e6c7ecb3bd1f639df6ffc23a1d076f4 301 Pfam PF00682 HMGL-like 4 277 8.1E-55 T 23-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 RPE_RS14615 6e6c7ecb3bd1f639df6ffc23a1d076f4 301 Gene3D G3DSA:3.20.20.70 3 288 4.1E-85 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS14615 6e6c7ecb3bd1f639df6ffc23a1d076f4 301 PANTHER PTHR10277:SF40 1 301 1.3E-156 T 23-04-2016 RPE_RS14615 6e6c7ecb3bd1f639df6ffc23a1d076f4 301 PANTHER PTHR10277 1 301 1.3E-156 T 23-04-2016 RPE_RS14615 6e6c7ecb3bd1f639df6ffc23a1d076f4 301 SUPERFAMILY SSF51569 1 292 1.42E-69 T 23-04-2016 RPE_RS18150 8873e2964bff912a52a7e9e29f3d0113 325 Gene3D G3DSA:3.40.50.1100 135 316 9.4E-74 T 23-04-2016 RPE_RS18150 8873e2964bff912a52a7e9e29f3d0113 325 PANTHER PTHR10314:SF110 6 319 6.5E-162 T 23-04-2016 RPE_RS18150 8873e2964bff912a52a7e9e29f3d0113 325 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 10 303 4.1E-68 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RPE_RS18150 8873e2964bff912a52a7e9e29f3d0113 325 TIGRFAM TIGR01136 cysKM: cysteine synthase 9 314 4.9E-133 T 23-04-2016 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936|UniPathway: UPA00136 RPE_RS18150 8873e2964bff912a52a7e9e29f3d0113 325 TIGRFAM TIGR01139 cysK: cysteine synthase A 9 314 2.6E-138 T 23-04-2016 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936|UniPathway: UPA00136 RPE_RS18150 8873e2964bff912a52a7e9e29f3d0113 325 Gene3D G3DSA:3.40.50.1100 39 134 1.8E-36 T 23-04-2016 RPE_RS18150 8873e2964bff912a52a7e9e29f3d0113 325 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 34 52 - T 23-04-2016 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 RPE_RS18150 8873e2964bff912a52a7e9e29f3d0113 325 SUPERFAMILY SSF53686 4 316 7.73E-98 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RPE_RS18150 8873e2964bff912a52a7e9e29f3d0113 325 PANTHER PTHR10314 6 319 6.5E-162 T 23-04-2016 RPE_RS14380 f38483ea2bfe83dcba7c61acbb2aa127 310 PANTHER PTHR34183 51 263 5.0E-73 T 23-04-2016 RPE_RS14380 f38483ea2bfe83dcba7c61acbb2aa127 310 SUPERFAMILY SSF50685 81 179 2.86E-10 T 23-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain RPE_RS14380 f38483ea2bfe83dcba7c61acbb2aa127 310 Pfam PF03330 Lytic transglycolase 87 176 2.1E-24 T 23-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain RPE_RS14380 f38483ea2bfe83dcba7c61acbb2aa127 310 PANTHER PTHR34183:SF1 51 263 5.0E-73 T 23-04-2016 RPE_RS14380 f38483ea2bfe83dcba7c61acbb2aa127 310 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 89 183 4.6E-41 T 23-04-2016 IPR012997 Rare lipoprotein A RPE_RS10515 b0bcc9a00eee9e492678b38c241587e2 768 PANTHER PTHR32552:SF11 478 768 6.3E-38 T 23-04-2016 RPE_RS10515 b0bcc9a00eee9e492678b38c241587e2 768 Gene3D G3DSA:2.40.170.20 206 768 1.6E-41 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RPE_RS10515 b0bcc9a00eee9e492678b38c241587e2 768 Gene3D G3DSA:2.170.130.10 98 205 1.2E-7 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RPE_RS10515 b0bcc9a00eee9e492678b38c241587e2 768 Pfam PF07715 TonB-dependent Receptor Plug Domain 98 201 1.9E-7 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RPE_RS10515 b0bcc9a00eee9e492678b38c241587e2 768 Pfam PF00593 TonB dependent receptor 489 766 5.5E-17 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RPE_RS10515 b0bcc9a00eee9e492678b38c241587e2 768 PANTHER PTHR32552 135 456 6.3E-38 T 23-04-2016 RPE_RS10515 b0bcc9a00eee9e492678b38c241587e2 768 PANTHER PTHR32552 478 768 6.3E-38 T 23-04-2016 RPE_RS10515 b0bcc9a00eee9e492678b38c241587e2 768 PANTHER PTHR32552:SF11 135 456 6.3E-38 T 23-04-2016 RPE_RS10515 b0bcc9a00eee9e492678b38c241587e2 768 SUPERFAMILY SSF56935 98 453 4.03E-63 T 23-04-2016 RPE_RS10515 b0bcc9a00eee9e492678b38c241587e2 768 SUPERFAMILY SSF56935 481 768 4.03E-63 T 23-04-2016 RPE_RS16990 0fb987778e72d3df6248f0d112bd5935 289 Pfam PF08904 Domain of unknown function (DUF1849) 34 282 1.1E-89 T 23-04-2016 IPR015000 Protein of unknown function DUF1849 RPE_RS18270 6a243f686833bda1f69d9b0a83e04ee9 763 Gene3D G3DSA:2.40.40.20 648 761 2.5E-10 T 23-04-2016 RPE_RS18270 6a243f686833bda1f69d9b0a83e04ee9 763 PANTHER PTHR11615 58 258 8.6E-199 T 23-04-2016 RPE_RS18270 6a243f686833bda1f69d9b0a83e04ee9 763 PANTHER PTHR11615 277 761 8.6E-199 T 23-04-2016 RPE_RS18270 6a243f686833bda1f69d9b0a83e04ee9 763 PIRSF PIRSF000144 1 763 0.0 T 23-04-2016 IPR010046 Oxidoreductase alpha (molybdopterin) subunit GO:0008863|GO:0030151|GO:0051539 RPE_RS18270 6a243f686833bda1f69d9b0a83e04ee9 763 Gene3D G3DSA:3.40.50.740 400 633 1.3E-46 T 23-04-2016 RPE_RS18270 6a243f686833bda1f69d9b0a83e04ee9 763 Gene3D G3DSA:3.40.50.740 116 188 1.3E-46 T 23-04-2016 RPE_RS18270 6a243f686833bda1f69d9b0a83e04ee9 763 Pfam PF00384 Molybdopterin oxidoreductase 116 418 1.5E-21 T 23-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 RPE_RS18270 6a243f686833bda1f69d9b0a83e04ee9 763 SUPERFAMILY SSF50692 645 762 3.16E-17 T 23-04-2016 IPR009010 Aspartate decarboxylase-like domain RPE_RS18270 6a243f686833bda1f69d9b0a83e04ee9 763 PANTHER PTHR11615:SF114 58 258 8.6E-199 T 23-04-2016 RPE_RS18270 6a243f686833bda1f69d9b0a83e04ee9 763 PANTHER PTHR11615:SF114 277 761 8.6E-199 T 23-04-2016 RPE_RS18270 6a243f686833bda1f69d9b0a83e04ee9 763 TIGRFAM TIGR01701 Fdhalpha-like: oxidoreductase alpha (molybdopterin) subunit 20 761 9.5E-277 T 23-04-2016 IPR010046 Oxidoreductase alpha (molybdopterin) subunit GO:0008863|GO:0030151|GO:0051539 RPE_RS18270 6a243f686833bda1f69d9b0a83e04ee9 763 Pfam PF01568 Molydopterin dinucleotide binding domain 650 758 1.9E-10 T 23-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 RPE_RS18270 6a243f686833bda1f69d9b0a83e04ee9 763 SUPERFAMILY SSF53706 54 633 8.64E-127 T 23-04-2016 RPE_RS18270 6a243f686833bda1f69d9b0a83e04ee9 763 Gene3D G3DSA:3.40.228.10 189 399 2.1E-48 T 23-04-2016 RPE_RS20625 089946f9bb693b749899d333ccd1f9d2 259 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 258 2.5E-60 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RPE_RS20625 089946f9bb693b749899d333ccd1f9d2 259 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 98 118 - T 23-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 RPE_RS20625 089946f9bb693b749899d333ccd1f9d2 259 Gene3D G3DSA:1.10.12.10 199 259 7.0E-17 T 23-04-2016 IPR014748 Crontonase, C-terminal RPE_RS20625 089946f9bb693b749899d333ccd1f9d2 259 PANTHER PTHR11941 4 256 1.3E-86 T 23-04-2016 RPE_RS20625 089946f9bb693b749899d333ccd1f9d2 259 PANTHER PTHR11941:SF13 4 256 1.3E-86 T 23-04-2016 RPE_RS20625 089946f9bb693b749899d333ccd1f9d2 259 Gene3D G3DSA:3.90.226.10 6 198 9.6E-65 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS20625 089946f9bb693b749899d333ccd1f9d2 259 SUPERFAMILY SSF52096 2 258 3.95E-80 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS20725 11e53f9f9af2b49e4003dc57d0a04ba5 533 Pfam PF10996 Beta-Casp domain 260 379 3.8E-26 T 23-04-2016 IPR022712 Beta-Casp domain RPE_RS20725 11e53f9f9af2b49e4003dc57d0a04ba5 533 SUPERFAMILY SSF56281 3 457 1.44E-112 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS20725 11e53f9f9af2b49e4003dc57d0a04ba5 533 SMART SM01027 260 380 5.6E-47 T 23-04-2016 IPR022712 Beta-Casp domain RPE_RS20725 11e53f9f9af2b49e4003dc57d0a04ba5 533 Gene3D G3DSA:3.60.15.10 4 102 1.4E-40 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS20725 11e53f9f9af2b49e4003dc57d0a04ba5 533 Gene3D G3DSA:3.60.15.10 138 271 1.4E-40 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS20725 11e53f9f9af2b49e4003dc57d0a04ba5 533 SMART SM00849 15 255 3.7E-14 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS20725 11e53f9f9af2b49e4003dc57d0a04ba5 533 PANTHER PTHR11203 1 467 3.7E-116 T 23-04-2016 RPE_RS20725 11e53f9f9af2b49e4003dc57d0a04ba5 533 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 394 448 1.8E-11 T 23-04-2016 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain RPE_RS20725 11e53f9f9af2b49e4003dc57d0a04ba5 533 PANTHER PTHR11203:SF11 1 467 3.7E-116 T 23-04-2016 RPE_RS20725 11e53f9f9af2b49e4003dc57d0a04ba5 533 Pfam PF00753 Metallo-beta-lactamase superfamily 15 234 7.8E-14 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS21535 6bd608ed2f8362c455d388db425c9c64 390 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 15 126 3.3E-37 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS21535 6bd608ed2f8362c455d388db425c9c64 390 Gene3D G3DSA:1.20.140.10 225 388 2.8E-67 T 23-04-2016 RPE_RS21535 6bd608ed2f8362c455d388db425c9c64 390 PANTHER PTHR10909 1 387 2.2E-274 T 23-04-2016 RPE_RS21535 6bd608ed2f8362c455d388db425c9c64 390 Gene3D G3DSA:2.40.110.10 129 224 1.9E-42 T 23-04-2016 RPE_RS21535 6bd608ed2f8362c455d388db425c9c64 390 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 132 144 - T 23-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RPE_RS21535 6bd608ed2f8362c455d388db425c9c64 390 PANTHER PTHR10909:SF332 1 387 2.2E-274 T 23-04-2016 RPE_RS21535 6bd608ed2f8362c455d388db425c9c64 390 SUPERFAMILY SSF56645 7 250 2.23E-88 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RPE_RS21535 6bd608ed2f8362c455d388db425c9c64 390 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 237 385 9.5E-46 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS21535 6bd608ed2f8362c455d388db425c9c64 390 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 344 363 - T 23-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RPE_RS21535 6bd608ed2f8362c455d388db425c9c64 390 Gene3D G3DSA:1.10.540.10 6 127 7.2E-44 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS21535 6bd608ed2f8362c455d388db425c9c64 390 SUPERFAMILY SSF47203 236 386 2.09E-49 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS21535 6bd608ed2f8362c455d388db425c9c64 390 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 130 225 6.8E-27 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RPE_RS11280 2f61257ca6183a572e8ba15ba735df19 379 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 8 120 6.9E-32 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS11280 2f61257ca6183a572e8ba15ba735df19 379 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 229 377 3.8E-46 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS11280 2f61257ca6183a572e8ba15ba735df19 379 SUPERFAMILY SSF56645 6 242 3.53E-79 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RPE_RS11280 2f61257ca6183a572e8ba15ba735df19 379 PANTHER PTHR10909 4 377 1.4E-240 T 23-04-2016 RPE_RS11280 2f61257ca6183a572e8ba15ba735df19 379 Gene3D G3DSA:2.40.110.10 124 216 2.3E-36 T 23-04-2016 RPE_RS11280 2f61257ca6183a572e8ba15ba735df19 379 PANTHER PTHR10909:SF204 4 377 1.4E-240 T 23-04-2016 RPE_RS11280 2f61257ca6183a572e8ba15ba735df19 379 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 124 217 2.0E-24 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RPE_RS11280 2f61257ca6183a572e8ba15ba735df19 379 Gene3D G3DSA:1.10.540.10 4 122 4.1E-39 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS11280 2f61257ca6183a572e8ba15ba735df19 379 SUPERFAMILY SSF47203 228 377 1.93E-45 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS11280 2f61257ca6183a572e8ba15ba735df19 379 Gene3D G3DSA:1.20.140.10 217 377 1.7E-61 T 23-04-2016 RPE_RS03000 796ef9f26b411d75df1573b7954e311e 279 PANTHER PTHR18968 7 259 4.9E-98 T 23-04-2016 RPE_RS03000 796ef9f26b411d75df1573b7954e311e 279 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 57 204 2.3E-29 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RPE_RS03000 796ef9f26b411d75df1573b7954e311e 279 Gene3D G3DSA:3.40.50.970 22 230 9.1E-75 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS03000 796ef9f26b411d75df1573b7954e311e 279 PANTHER PTHR18968:SF40 7 259 4.9E-98 T 23-04-2016 RPE_RS03000 796ef9f26b411d75df1573b7954e311e 279 SUPERFAMILY SSF52518 20 260 3.25E-72 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS03000 796ef9f26b411d75df1573b7954e311e 279 TIGRFAM TIGR02177 PorB_KorB: 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family 23 223 1.5E-78 T 23-04-2016 IPR011896 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate RPE_RS00255 b958e34d0202ce919f80a89557905609 161 Pfam PF12680 SnoaL-like domain 13 116 2.1E-17 T 23-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain RPE_RS00255 b958e34d0202ce919f80a89557905609 161 SUPERFAMILY SSF54427 9 134 4.2E-23 T 23-04-2016 IPR032710 NTF2-like domain RPE_RS00255 b958e34d0202ce919f80a89557905609 161 Gene3D G3DSA:3.10.450.50 9 133 6.5E-20 T 23-04-2016 IPR032710 NTF2-like domain RPE_RS20270 bbc68b0233bf4b7b00bd8726dc02eaa6 594 PANTHER PTHR11070 1 293 3.3E-34 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RPE_RS20270 bbc68b0233bf4b7b00bd8726dc02eaa6 594 Gene3D G3DSA:3.40.50.300 2 269 2.6E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS20270 bbc68b0233bf4b7b00bd8726dc02eaa6 594 SUPERFAMILY SSF52540 3 564 9.66E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS20270 bbc68b0233bf4b7b00bd8726dc02eaa6 594 Gene3D G3DSA:3.40.50.300 492 562 3.1E-9 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS20270 bbc68b0233bf4b7b00bd8726dc02eaa6 594 Pfam PF13245 Part of AAA domain 18 70 1.6E-6 T 23-04-2016 RPE_RS20270 bbc68b0233bf4b7b00bd8726dc02eaa6 594 Pfam PF00580 UvrD/REP helicase N-terminal domain 165 266 5.1E-14 T 23-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 RPE_RS20270 bbc68b0233bf4b7b00bd8726dc02eaa6 594 Pfam PF13361 UvrD-like helicase C-terminal domain 500 560 1.6E-7 T 23-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RPE_RS04680 2ac5f20c2f8329ef4e24347d7515c06f 184 SUPERFAMILY SSF53335 1 181 1.65E-39 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS04680 2ac5f20c2f8329ef4e24347d7515c06f 184 PANTHER PTHR18895:SF60 1 184 1.8E-30 T 23-04-2016 RPE_RS04680 2ac5f20c2f8329ef4e24347d7515c06f 184 PIRSF PIRSF004553 1 184 1.3E-47 T 23-04-2016 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RPE_RS04680 2ac5f20c2f8329ef4e24347d7515c06f 184 Pfam PF03602 Conserved hypothetical protein 95 1 181 2.0E-49 T 23-04-2016 RPE_RS04680 2ac5f20c2f8329ef4e24347d7515c06f 184 PANTHER PTHR18895 1 184 1.8E-30 T 23-04-2016 RPE_RS04680 2ac5f20c2f8329ef4e24347d7515c06f 184 Gene3D G3DSA:3.40.50.150 1 183 5.4E-53 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS04680 2ac5f20c2f8329ef4e24347d7515c06f 184 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 2 182 5.2E-41 T 23-04-2016 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RPE_RS04680 2ac5f20c2f8329ef4e24347d7515c06f 184 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 119 125 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RPE_RS21195 46447c5de7d6f48798a53e37ab6f160f 255 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 37 181 3.9E-27 T 23-04-2016 IPR006342 Methyltransferase FkbM KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- RPE_RS21195 46447c5de7d6f48798a53e37ab6f160f 255 SUPERFAMILY SSF53335 19 206 1.96E-42 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS21195 46447c5de7d6f48798a53e37ab6f160f 255 Pfam PF05050 Methyltransferase FkbM domain 39 201 5.5E-19 T 23-04-2016 IPR006342 Methyltransferase FkbM KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- RPE_RS21195 46447c5de7d6f48798a53e37ab6f160f 255 PANTHER PTHR34203:SF2 34 180 7.2E-19 T 23-04-2016 RPE_RS21195 46447c5de7d6f48798a53e37ab6f160f 255 PANTHER PTHR34203 34 180 7.2E-19 T 23-04-2016 RPE_RS21195 46447c5de7d6f48798a53e37ab6f160f 255 Gene3D G3DSA:3.40.50.150 21 207 5.1E-39 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS10680 a3a774429f9df17e25e5e86f7be72c1f 759 SUPERFAMILY SSF53335 491 671 1.74E-19 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS10680 a3a774429f9df17e25e5e86f7be72c1f 759 Gene3D G3DSA:3.40.50.150 486 747 4.1E-31 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS23900 f37e0243cc585177d31338e44ec55d07 157 PANTHER PTHR30615 25 157 2.4E-62 T 23-04-2016 RPE_RS23900 f37e0243cc585177d31338e44ec55d07 157 PIRSF PIRSF004681 17 155 3.6E-54 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 RPE_RS23900 f37e0243cc585177d31338e44ec55d07 157 Gene3D G3DSA:2.60.120.460 18 154 1.8E-54 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 RPE_RS23900 f37e0243cc585177d31338e44ec55d07 157 SUPERFAMILY SSF111038 25 154 6.67E-48 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 RPE_RS23900 f37e0243cc585177d31338e44ec55d07 157 Pfam PF01894 Uncharacterised protein family UPF0047 36 151 1.8E-40 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 RPE_RS23900 f37e0243cc585177d31338e44ec55d07 157 TIGRFAM TIGR00149 TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme 29 154 2.1E-41 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 RPE_RS23900 f37e0243cc585177d31338e44ec55d07 157 ProSitePatterns PS01314 Uncharacterized protein family UPF0047 signature. 116 134 - T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 RPE_RS17325 8843e8e8f543af6743f952cbb2d7e747 262 Pfam PF01464 Transglycosylase SLT domain 90 188 1.1E-18 T 23-04-2016 IPR008258 Transglycosylase SLT domain 1 RPE_RS17325 8843e8e8f543af6743f952cbb2d7e747 262 PANTHER PTHR21666 68 183 4.4E-17 T 23-04-2016 RPE_RS17325 8843e8e8f543af6743f952cbb2d7e747 262 SUPERFAMILY SSF53955 63 184 4.07E-28 T 23-04-2016 IPR023346 Lysozyme-like domain RPE_RS17325 8843e8e8f543af6743f952cbb2d7e747 262 Gene3D G3DSA:1.10.530.10 84 186 4.7E-26 T 23-04-2016 RPE_RS21860 7b40d5527b6f37ca2ca80eaaa0425beb 270 SUPERFAMILY SSF103088 151 257 2.09E-17 T 23-04-2016 IPR006665 OmpA-like domain RPE_RS21860 7b40d5527b6f37ca2ca80eaaa0425beb 270 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 6 61 5.9E-15 T 23-04-2016 IPR025713 Motility protein B, N-terminal domain RPE_RS21860 7b40d5527b6f37ca2ca80eaaa0425beb 270 PANTHER PTHR30329 6 270 9.5E-53 T 23-04-2016 RPE_RS21860 7b40d5527b6f37ca2ca80eaaa0425beb 270 Gene3D G3DSA:3.30.1330.60 153 257 6.7E-14 T 23-04-2016 IPR006665 OmpA-like domain RPE_RS21860 7b40d5527b6f37ca2ca80eaaa0425beb 270 Pfam PF00691 OmpA family 169 246 2.2E-9 T 23-04-2016 IPR006665 OmpA-like domain RPE_RS21860 7b40d5527b6f37ca2ca80eaaa0425beb 270 PANTHER PTHR30329:SF2 6 270 9.5E-53 T 23-04-2016 RPE_RS11975 48484221a94e1e4427c88f078c144efd 361 PANTHER PTHR11941:SF53 1 195 1.1E-119 T 23-04-2016 RPE_RS11975 48484221a94e1e4427c88f078c144efd 361 PANTHER PTHR11941:SF53 254 332 1.1E-119 T 23-04-2016 RPE_RS11975 48484221a94e1e4427c88f078c144efd 361 Pfam PF16113 Enoyl-CoA hydratase/isomerase 23 349 4.9E-123 T 23-04-2016 IPR032259 Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type GO:0003860 RPE_RS11975 48484221a94e1e4427c88f078c144efd 361 Gene3D G3DSA:1.10.12.10 275 333 7.0E-5 T 23-04-2016 IPR014748 Crontonase, C-terminal RPE_RS11975 48484221a94e1e4427c88f078c144efd 361 PANTHER PTHR11941 1 195 1.1E-119 T 23-04-2016 RPE_RS11975 48484221a94e1e4427c88f078c144efd 361 PANTHER PTHR11941 254 332 1.1E-119 T 23-04-2016 RPE_RS11975 48484221a94e1e4427c88f078c144efd 361 SUPERFAMILY SSF52096 13 203 4.34E-59 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS11975 48484221a94e1e4427c88f078c144efd 361 SUPERFAMILY SSF52096 262 333 4.34E-59 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS11975 48484221a94e1e4427c88f078c144efd 361 Gene3D G3DSA:3.90.226.10 14 208 8.0E-52 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS24020 60a6bf48650eaf9dc7b352d57d8b1168 345 PANTHER PTHR11108 10 342 2.3E-112 T 23-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 RPE_RS24020 60a6bf48650eaf9dc7b352d57d8b1168 345 Gene3D G3DSA:3.40.50.1400 19 222 4.9E-64 T 23-04-2016 RPE_RS24020 60a6bf48650eaf9dc7b352d57d8b1168 345 Hamap MF_00323 Ferrochelatase [hemH]. 19 341 36.776 T 23-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 RPE_RS24020 60a6bf48650eaf9dc7b352d57d8b1168 345 Pfam PF00762 Ferrochelatase 21 340 2.1E-104 T 23-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 RPE_RS24020 60a6bf48650eaf9dc7b352d57d8b1168 345 Gene3D G3DSA:3.40.50.1400 223 342 2.6E-34 T 23-04-2016 RPE_RS24020 60a6bf48650eaf9dc7b352d57d8b1168 345 TIGRFAM TIGR00109 hemH: ferrochelatase 19 341 2.5E-87 T 23-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 RPE_RS24020 60a6bf48650eaf9dc7b352d57d8b1168 345 ProSitePatterns PS00534 Ferrochelatase signature. 210 230 - T 23-04-2016 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 RPE_RS24020 60a6bf48650eaf9dc7b352d57d8b1168 345 SUPERFAMILY SSF53800 19 344 1.29E-99 T 23-04-2016 RPE_RS24140 444ab9a19e50aa8c0a81109acaf997fe 219 Pfam PF00005 ABC transporter 18 165 5.3E-28 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS24140 444ab9a19e50aa8c0a81109acaf997fe 219 PANTHER PTHR24220 3 216 1.0E-99 T 23-04-2016 RPE_RS24140 444ab9a19e50aa8c0a81109acaf997fe 219 PANTHER PTHR24220:SF470 3 216 1.0E-99 T 23-04-2016 RPE_RS24140 444ab9a19e50aa8c0a81109acaf997fe 219 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS24140 444ab9a19e50aa8c0a81109acaf997fe 219 SUPERFAMILY SSF52540 2 216 9.38E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS24140 444ab9a19e50aa8c0a81109acaf997fe 219 Gene3D G3DSA:3.40.50.300 2 215 6.7E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS24140 444ab9a19e50aa8c0a81109acaf997fe 219 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 1 214 1.5E-82 T 23-04-2016 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 RPE_RS24140 444ab9a19e50aa8c0a81109acaf997fe 219 SMART SM00382 27 214 3.5E-6 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS02180 93a06a56b7823cd289debb033d6d84b2 87 Pfam PF06620 Protein of unknown function (DUF1150) 13 87 3.5E-33 T 23-04-2016 IPR009531 Protein of unknown function DUF1150 RPE_RS00695 2740160b017370b16b6b73341b7fbb9c 90 Pfam PF01722 BolA-like protein 11 88 1.3E-32 T 23-04-2016 IPR002634 BolA protein RPE_RS00695 2740160b017370b16b6b73341b7fbb9c 90 PANTHER PTHR12735:SF24 1 88 7.3E-30 T 23-04-2016 RPE_RS00695 2740160b017370b16b6b73341b7fbb9c 90 PANTHER PTHR12735 1 88 7.3E-30 T 23-04-2016 RPE_RS00695 2740160b017370b16b6b73341b7fbb9c 90 Gene3D G3DSA:3.30.70.1500 2 85 9.2E-32 T 23-04-2016 RPE_RS00695 2740160b017370b16b6b73341b7fbb9c 90 PIRSF PIRSF003113 1 90 1.7E-32 T 23-04-2016 IPR002634 BolA protein RPE_RS00695 2740160b017370b16b6b73341b7fbb9c 90 SUPERFAMILY SSF82657 2 88 8.89E-28 T 23-04-2016 IPR002634 BolA protein RPE_RS23990 7758f074c41b9fb7549ec4718e8e3cfa 195 PANTHER PTHR23091 20 163 4.6E-13 T 23-04-2016 RPE_RS23990 7758f074c41b9fb7549ec4718e8e3cfa 195 Gene3D G3DSA:3.40.630.30 19 143 5.0E-18 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS23990 7758f074c41b9fb7549ec4718e8e3cfa 195 Pfam PF00583 Acetyltransferase (GNAT) family 66 138 1.7E-8 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RPE_RS23990 7758f074c41b9fb7549ec4718e8e3cfa 195 SUPERFAMILY SSF55729 18 143 4.29E-22 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS10780 f0accd413924865ef59175359454d582 300 PRINTS PR00108 Thymidylate synthase family signature 150 169 8.5E-39 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RPE_RS10780 f0accd413924865ef59175359454d582 300 PRINTS PR00108 Thymidylate synthase family signature 195 221 8.5E-39 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RPE_RS10780 f0accd413924865ef59175359454d582 300 PRINTS PR00108 Thymidylate synthase family signature 176 191 8.5E-39 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RPE_RS10780 f0accd413924865ef59175359454d582 300 PRINTS PR00108 Thymidylate synthase family signature 233 250 8.5E-39 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RPE_RS10780 f0accd413924865ef59175359454d582 300 PRINTS PR00108 Thymidylate synthase family signature 49 70 8.5E-39 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RPE_RS10780 f0accd413924865ef59175359454d582 300 SUPERFAMILY SSF55831 3 300 3.01E-111 T 23-04-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RPE_RS10780 f0accd413924865ef59175359454d582 300 PANTHER PTHR11548 1 95 1.4E-126 T 23-04-2016 RPE_RS10780 f0accd413924865ef59175359454d582 300 PANTHER PTHR11548 123 300 1.4E-126 T 23-04-2016 RPE_RS10780 f0accd413924865ef59175359454d582 300 ProSitePatterns PS00091 Thymidylate synthase active site. 161 189 - T 23-04-2016 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RPE_RS10780 f0accd413924865ef59175359454d582 300 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 8 300 3.7E-104 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RPE_RS10780 f0accd413924865ef59175359454d582 300 Pfam PF00303 Thymidylate synthase 8 300 6.8E-103 T 23-04-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RPE_RS10780 f0accd413924865ef59175359454d582 300 Gene3D G3DSA:3.30.572.10 3 300 2.4E-110 T 23-04-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RPE_RS10780 f0accd413924865ef59175359454d582 300 Hamap MF_00008 Thymidylate synthase [thyA]. 7 300 42.303 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RPE_RS18785 d4514ee7585783d025843b015d3aac08 324 Pfam PF00482 Type II secretion system (T2SS), protein F 185 313 5.7E-20 T 23-04-2016 IPR018076 Type II secretion system F domain RPE_RS18785 d4514ee7585783d025843b015d3aac08 324 PANTHER PTHR35007 15 323 5.1E-88 T 23-04-2016 RPE_RS18785 d4514ee7585783d025843b015d3aac08 324 PANTHER PTHR35007:SF2 15 323 5.1E-88 T 23-04-2016 RPE_RS10750 1402a2ca690acdbdd73df952ea1c10df 474 PRINTS PR00149 Fumarate lyase superfamily signature 145 163 3.9E-33 T 23-04-2016 IPR000362 Fumarate lyase family RPE_RS10750 1402a2ca690acdbdd73df952ea1c10df 474 PRINTS PR00149 Fumarate lyase superfamily signature 191 209 3.9E-33 T 23-04-2016 IPR000362 Fumarate lyase family RPE_RS10750 1402a2ca690acdbdd73df952ea1c10df 474 PRINTS PR00149 Fumarate lyase superfamily signature 328 344 3.9E-33 T 23-04-2016 IPR000362 Fumarate lyase family RPE_RS10750 1402a2ca690acdbdd73df952ea1c10df 474 PRINTS PR00149 Fumarate lyase superfamily signature 282 309 3.9E-33 T 23-04-2016 IPR000362 Fumarate lyase family RPE_RS10750 1402a2ca690acdbdd73df952ea1c10df 474 PRINTS PR00145 Argininosuccinate lyase family signature 328 344 4.5E-5 T 23-04-2016 RPE_RS10750 1402a2ca690acdbdd73df952ea1c10df 474 PRINTS PR00145 Argininosuccinate lyase family signature 144 166 4.5E-5 T 23-04-2016 RPE_RS10750 1402a2ca690acdbdd73df952ea1c10df 474 PRINTS PR00145 Argininosuccinate lyase family signature 186 206 4.5E-5 T 23-04-2016 RPE_RS10750 1402a2ca690acdbdd73df952ea1c10df 474 Pfam PF00206 Lyase 23 353 9.1E-117 T 23-04-2016 IPR022761 Fumarate lyase, N-terminal RPE_RS10750 1402a2ca690acdbdd73df952ea1c10df 474 Hamap MF_00743 Fumarate hydratase class II [fumC]. 15 473 89.044 T 23-04-2016 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 RPE_RS10750 1402a2ca690acdbdd73df952ea1c10df 474 ProSitePatterns PS00163 Fumarate lyases signature. 328 337 - T 23-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 RPE_RS10750 1402a2ca690acdbdd73df952ea1c10df 474 Gene3D G3DSA:1.20.200.10 150 427 5.1E-103 T 23-04-2016 RPE_RS10750 1402a2ca690acdbdd73df952ea1c10df 474 Gene3D G3DSA:1.10.40.30 428 474 1.1E-28 T 23-04-2016 RPE_RS10750 1402a2ca690acdbdd73df952ea1c10df 474 PANTHER PTHR11444:SF1 3 474 1.2E-248 T 23-04-2016 RPE_RS10750 1402a2ca690acdbdd73df952ea1c10df 474 Gene3D G3DSA:1.10.275.10 15 149 6.8E-61 T 23-04-2016 IPR024083 Fumarase/histidase, N-terminal RPE_RS10750 1402a2ca690acdbdd73df952ea1c10df 474 Pfam PF10415 Fumarase C C-terminus 419 472 7.8E-22 T 23-04-2016 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 RPE_RS10750 1402a2ca690acdbdd73df952ea1c10df 474 PANTHER PTHR11444 3 474 1.2E-248 T 23-04-2016 IPR000362 Fumarate lyase family RPE_RS10750 1402a2ca690acdbdd73df952ea1c10df 474 SUPERFAMILY SSF48557 16 474 6.44E-154 T 23-04-2016 IPR008948 L-Aspartase-like GO:0003824 RPE_RS10750 1402a2ca690acdbdd73df952ea1c10df 474 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 16 470 1.1E-223 T 23-04-2016 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 RPE_RS13660 9505fb977a05be3f64c29a0f12d6202d 1738 SMART SM01359 872 1016 1.6E-30 T 23-04-2016 IPR011625 Alpha-2-macroglobulin, N-terminal 2 RPE_RS13660 9505fb977a05be3f64c29a0f12d6202d 1738 PANTHER PTHR40094 404 1738 7.9E-50 T 23-04-2016 RPE_RS13660 9505fb977a05be3f64c29a0f12d6202d 1738 SUPERFAMILY SSF48239 1280 1531 7.18E-41 T 23-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid RPE_RS13660 9505fb977a05be3f64c29a0f12d6202d 1738 Pfam PF11974 Alpha-2-macroglobulin MG1 domain 407 507 2.1E-26 T 23-04-2016 IPR021868 Alpha-2-macroglobulin MG1 domain RPE_RS13660 9505fb977a05be3f64c29a0f12d6202d 1738 Gene3D G3DSA:1.50.10.20 1280 1527 1.6E-28 T 23-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid RPE_RS13660 9505fb977a05be3f64c29a0f12d6202d 1738 PIRSF PIRSF038980 11 1738 0.0 T 23-04-2016 IPR026284 Alpha-2-macroglobulin domain protein, bacteria RPE_RS13660 9505fb977a05be3f64c29a0f12d6202d 1738 Pfam PF01835 MG2 domain 514 609 2.5E-20 T 23-04-2016 IPR002890 Alpha-2-macroglobulin, N-terminal GO:0004866 RPE_RS13660 9505fb977a05be3f64c29a0f12d6202d 1738 SMART SM01360 1077 1166 3.4E-22 T 23-04-2016 IPR001599 Alpha-2-macroglobulin GO:0004866 RPE_RS13660 9505fb977a05be3f64c29a0f12d6202d 1738 Pfam PF07703 Alpha-2-macroglobulin family N-terminal region 873 1016 1.4E-10 T 23-04-2016 IPR011625 Alpha-2-macroglobulin, N-terminal 2 RPE_RS13660 9505fb977a05be3f64c29a0f12d6202d 1738 PANTHER PTHR40094:SF1 404 1738 7.9E-50 T 23-04-2016 RPE_RS13660 9505fb977a05be3f64c29a0f12d6202d 1738 Pfam PF00207 Alpha-2-macroglobulin family 1079 1155 1.4E-7 T 23-04-2016 IPR001599 Alpha-2-macroglobulin GO:0004866 RPE_RS11180 8b8c5bbb2fd1740ad1b85ff5ae7f2377 460 PANTHER PTHR11632 7 458 3.9E-113 T 23-04-2016 RPE_RS11180 8b8c5bbb2fd1740ad1b85ff5ae7f2377 460 Pfam PF00890 FAD binding domain 8 429 2.5E-32 T 23-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain RPE_RS11180 8b8c5bbb2fd1740ad1b85ff5ae7f2377 460 Gene3D G3DSA:3.50.50.60 395 457 8.8E-41 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS11180 8b8c5bbb2fd1740ad1b85ff5ae7f2377 460 Gene3D G3DSA:3.50.50.60 5 234 8.8E-41 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS11180 8b8c5bbb2fd1740ad1b85ff5ae7f2377 460 TIGRFAM TIGR02485 CobZ_N-term: precorrin 3B synthase CobZ 7 458 7.0E-151 T 23-04-2016 IPR012831 Precorrin 3B synthase CobZ RPE_RS11180 8b8c5bbb2fd1740ad1b85ff5ae7f2377 460 SUPERFAMILY SSF51905 1 205 2.0E-29 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS11180 8b8c5bbb2fd1740ad1b85ff5ae7f2377 460 SUPERFAMILY SSF51905 393 459 2.0E-29 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS11180 8b8c5bbb2fd1740ad1b85ff5ae7f2377 460 Gene3D G3DSA:3.90.700.10 254 391 2.4E-12 T 23-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain RPE_RS11180 8b8c5bbb2fd1740ad1b85ff5ae7f2377 460 SUPERFAMILY SSF56425 251 394 1.26E-17 T 23-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain RPE_RS11180 8b8c5bbb2fd1740ad1b85ff5ae7f2377 460 PANTHER PTHR11632:SF47 7 458 3.9E-113 T 23-04-2016 RPE_RS07465 4a69e9c73f1658d042846f2bbdc9321b 226 Pfam PF09917 Uncharacterized protein conserved in bacteria (DUF2147) 36 153 1.0E-18 T 23-04-2016 IPR019223 Domain of unknown function DUF2147 RPE_RS07465 4a69e9c73f1658d042846f2bbdc9321b 226 PANTHER PTHR36919 6 172 8.2E-56 T 23-04-2016 RPE_RS07465 4a69e9c73f1658d042846f2bbdc9321b 226 PANTHER PTHR36919:SF1 6 172 8.2E-56 T 23-04-2016 RPE_RS18605 fc846372f65608a12173a19499c86c20 1100 Gene3D G3DSA:3.90.400.10 122 190 1.3E-22 T 23-04-2016 RPE_RS18605 fc846372f65608a12173a19499c86c20 1100 SUPERFAMILY SSF56112 1024 1041 1.55E-18 T 23-04-2016 IPR011009 Protein kinase-like domain RPE_RS18605 fc846372f65608a12173a19499c86c20 1100 SUPERFAMILY SSF56112 845 997 1.55E-18 T 23-04-2016 IPR011009 Protein kinase-like domain RPE_RS18605 fc846372f65608a12173a19499c86c20 1100 SUPERFAMILY SSF56112 730 802 1.55E-18 T 23-04-2016 IPR011009 Protein kinase-like domain RPE_RS18605 fc846372f65608a12173a19499c86c20 1100 PANTHER PTHR10357:SF164 453 582 1.2E-281 T 23-04-2016 RPE_RS18605 fc846372f65608a12173a19499c86c20 1100 PANTHER PTHR10357:SF164 7 414 1.2E-281 T 23-04-2016 RPE_RS18605 fc846372f65608a12173a19499c86c20 1100 TIGRFAM TIGR02457 TreS_Cterm: putative maltokinase 572 1092 1.3E-173 T 23-04-2016 IPR012811 Trehalose synthase/probable maltokinase, C-terminal domain RPE_RS18605 fc846372f65608a12173a19499c86c20 1100 Gene3D G3DSA:3.20.20.80 456 469 6.8E-106 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RPE_RS18605 fc846372f65608a12173a19499c86c20 1100 Gene3D G3DSA:3.20.20.80 24 121 6.8E-106 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RPE_RS18605 fc846372f65608a12173a19499c86c20 1100 Gene3D G3DSA:3.20.20.80 198 423 6.8E-106 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RPE_RS18605 fc846372f65608a12173a19499c86c20 1100 Pfam PF16657 Maltogenic Amylase, C-terminal domain 477 554 3.5E-30 T 23-04-2016 IPR032091 Maltogenic Amylase, C-terminal RPE_RS18605 fc846372f65608a12173a19499c86c20 1100 TIGRFAM TIGR02456 treS_nterm: trehalose synthase 22 557 1.1E-275 T 23-04-2016 IPR012810 Trehalose synthase/alpha-amylase, N-terminal GO:0003824|GO:0005975 KEGG: 00500+5.4.99.16|MetaCyc: PWY-2622 RPE_RS18605 fc846372f65608a12173a19499c86c20 1100 SUPERFAMILY SSF51445 367 474 2.21E-125 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RPE_RS18605 fc846372f65608a12173a19499c86c20 1100 SUPERFAMILY SSF51445 21 340 2.21E-125 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RPE_RS18605 fc846372f65608a12173a19499c86c20 1100 PANTHER PTHR10357 453 582 1.2E-281 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RPE_RS18605 fc846372f65608a12173a19499c86c20 1100 PANTHER PTHR10357 7 414 1.2E-281 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RPE_RS18605 fc846372f65608a12173a19499c86c20 1100 SMART SM00642 30 429 4.9E-101 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RPE_RS18605 fc846372f65608a12173a19499c86c20 1100 SUPERFAMILY SSF51011 477 557 4.32E-18 T 23-04-2016 RPE_RS18605 fc846372f65608a12173a19499c86c20 1100 Gene3D G3DSA:2.60.40.1180 477 557 6.4E-19 T 23-04-2016 IPR013780 Glycosyl hydrolase, all-beta RPE_RS18605 fc846372f65608a12173a19499c86c20 1100 Pfam PF00128 Alpha amylase, catalytic domain 45 398 1.8E-75 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RPE_RS19610 6204517480c3001bef3a0921fee92732 845 PRINTS PR00344 Bacterial sensor protein C-terminal signature 535 548 1.0E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS19610 6204517480c3001bef3a0921fee92732 845 PRINTS PR00344 Bacterial sensor protein C-terminal signature 494 504 1.0E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS19610 6204517480c3001bef3a0921fee92732 845 PRINTS PR00344 Bacterial sensor protein C-terminal signature 511 529 1.0E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS19610 6204517480c3001bef3a0921fee92732 845 PRINTS PR00344 Bacterial sensor protein C-terminal signature 476 490 1.0E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS19610 6204517480c3001bef3a0921fee92732 845 Gene3D G3DSA:3.30.565.10 389 554 1.9E-42 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS19610 6204517480c3001bef3a0921fee92732 845 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 435 550 7.7E-27 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS19610 6204517480c3001bef3a0921fee92732 845 Gene3D G3DSA:1.20.120.160 726 831 1.3E-18 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS19610 6204517480c3001bef3a0921fee92732 845 Pfam PF00512 His Kinase A (phospho-acceptor) domain 323 388 1.2E-15 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS19610 6204517480c3001bef3a0921fee92732 845 SMART SM00448 580 694 8.7E-33 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS19610 6204517480c3001bef3a0921fee92732 845 SMART SM00073 740 837 0.0052 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS19610 6204517480c3001bef3a0921fee92732 845 SUPERFAMILY SSF47384 311 389 1.35E-18 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS19610 6204517480c3001bef3a0921fee92732 845 Gene3D G3DSA:1.10.287.130 315 384 1.1E-13 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS19610 6204517480c3001bef3a0921fee92732 845 PANTHER PTHR24423 5 10 1.3E-141 T 23-04-2016 RPE_RS19610 6204517480c3001bef3a0921fee92732 845 PANTHER PTHR24423 302 698 1.3E-141 T 23-04-2016 RPE_RS19610 6204517480c3001bef3a0921fee92732 845 Gene3D G3DSA:3.30.450.20 91 190 1.0E-10 T 23-04-2016 RPE_RS19610 6204517480c3001bef3a0921fee92732 845 Gene3D G3DSA:3.40.50.2300 578 702 4.3E-38 T 23-04-2016 RPE_RS19610 6204517480c3001bef3a0921fee92732 845 Pfam PF00072 Response regulator receiver domain 582 694 1.7E-25 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS19610 6204517480c3001bef3a0921fee92732 845 SUPERFAMILY SSF52172 578 701 1.71E-36 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS19610 6204517480c3001bef3a0921fee92732 845 Pfam PF02743 Cache domain 40 220 2.0E-14 T 23-04-2016 IPR033479 Double Cache domain 1 RPE_RS19610 6204517480c3001bef3a0921fee92732 845 SMART SM00387 435 551 1.2E-34 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS19610 6204517480c3001bef3a0921fee92732 845 SUPERFAMILY SSF47226 732 831 1.1E-17 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS19610 6204517480c3001bef3a0921fee92732 845 SMART SM00388 323 388 3.6E-20 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS19610 6204517480c3001bef3a0921fee92732 845 Pfam PF01627 Hpt domain 751 829 2.7E-9 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS19610 6204517480c3001bef3a0921fee92732 845 SUPERFAMILY SSF55874 377 549 1.17E-43 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS19610 6204517480c3001bef3a0921fee92732 845 PANTHER PTHR24423:SF491 5 10 1.3E-141 T 23-04-2016 RPE_RS19610 6204517480c3001bef3a0921fee92732 845 PANTHER PTHR24423:SF491 302 698 1.3E-141 T 23-04-2016 RPE_RS17660 7716112e8d0da4313005064577a39d0d 726 SUPERFAMILY SSF50998 71 623 4.71E-169 T 23-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily RPE_RS17660 7716112e8d0da4313005064577a39d0d 726 Pfam PF01011 PQQ enzyme repeat 332 359 1.2E-5 T 23-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat RPE_RS17660 7716112e8d0da4313005064577a39d0d 726 PANTHER PTHR32303 429 598 6.4E-88 T 23-04-2016 RPE_RS17660 7716112e8d0da4313005064577a39d0d 726 PANTHER PTHR32303 76 399 6.4E-88 T 23-04-2016 RPE_RS17660 7716112e8d0da4313005064577a39d0d 726 Pfam PF13360 PQQ-like domain 137 260 6.8E-15 T 23-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat RPE_RS17660 7716112e8d0da4313005064577a39d0d 726 Pfam PF13360 PQQ-like domain 506 575 3.2E-8 T 23-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat RPE_RS17660 7716112e8d0da4313005064577a39d0d 726 SMART SM00564 173 205 2.7E-6 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RPE_RS17660 7716112e8d0da4313005064577a39d0d 726 SMART SM00564 296 350 28.0 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RPE_RS17660 7716112e8d0da4313005064577a39d0d 726 SMART SM00564 123 154 1.7E-6 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RPE_RS17660 7716112e8d0da4313005064577a39d0d 726 SMART SM00564 533 565 1.2E-5 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RPE_RS17660 7716112e8d0da4313005064577a39d0d 726 SMART SM00564 219 257 0.0022 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RPE_RS17660 7716112e8d0da4313005064577a39d0d 726 Gene3D G3DSA:1.10.760.10 635 720 1.4E-15 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS17660 7716112e8d0da4313005064577a39d0d 726 ProSitePatterns PS00364 Bacterial quinoprotein dehydrogenases signature 2. 295 316 - T 23-04-2016 IPR001479 Quinoprotein dehydrogenase, conserved site GO:0030288|GO:0055114 RPE_RS17660 7716112e8d0da4313005064577a39d0d 726 PANTHER PTHR32303:SF2 429 598 6.4E-88 T 23-04-2016 RPE_RS17660 7716112e8d0da4313005064577a39d0d 726 PANTHER PTHR32303:SF2 76 399 6.4E-88 T 23-04-2016 RPE_RS17660 7716112e8d0da4313005064577a39d0d 726 TIGRFAM TIGR03075 PQQ_enz_alc_DH: PQQ-dependent dehydrogenase, methanol/ethanol family 61 593 3.3E-209 T 23-04-2016 IPR017512 PQQ-dependent dehydrogenase, methanol/ethanol family GO:0005509|GO:0016020|GO:0016614|GO:0055114 RPE_RS17660 7716112e8d0da4313005064577a39d0d 726 Gene3D G3DSA:2.140.10.10 32 625 2.0E-157 T 23-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain RPE_RS17660 7716112e8d0da4313005064577a39d0d 726 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 643 716 3.4E-10 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS17660 7716112e8d0da4313005064577a39d0d 726 SUPERFAMILY SSF46626 634 719 1.58E-15 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS06090 00604e936ead8e94dfc27fe548f2c00d 441 SUPERFAMILY SSF52172 27 175 9.96E-38 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS06090 00604e936ead8e94dfc27fe548f2c00d 441 Pfam PF00072 Response regulator receiver domain 28 140 1.3E-28 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS06090 00604e936ead8e94dfc27fe548f2c00d 441 PANTHER PTHR26402:SF292 26 148 2.2E-34 T 23-04-2016 RPE_RS06090 00604e936ead8e94dfc27fe548f2c00d 441 SMART SM00448 26 140 2.5E-31 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS06090 00604e936ead8e94dfc27fe548f2c00d 441 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 214 404 1.0E-33 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 RPE_RS06090 00604e936ead8e94dfc27fe548f2c00d 441 Gene3D G3DSA:3.40.50.2300 27 153 1.2E-35 T 23-04-2016 RPE_RS06090 00604e936ead8e94dfc27fe548f2c00d 441 SMART SM00331 187 404 3.2E-20 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 RPE_RS06090 00604e936ead8e94dfc27fe548f2c00d 441 PANTHER PTHR26402 26 148 2.2E-34 T 23-04-2016 RPE_RS13595 5cb92a111b1088498f97b9cf39074483 607 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 3 598 5.9E-275 T 23-04-2016 IPR006298 GTP-binding protein TypA GO:0005525 RPE_RS13595 5cb92a111b1088498f97b9cf39074483 607 Gene3D G3DSA:3.30.70.240 400 481 2.1E-29 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain RPE_RS13595 5cb92a111b1088498f97b9cf39074483 607 Pfam PF00009 Elongation factor Tu GTP binding domain 2 193 2.9E-57 T 23-04-2016 RPE_RS13595 5cb92a111b1088498f97b9cf39074483 607 Pfam PF03144 Elongation factor Tu domain 2 217 287 2.0E-11 T 23-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RPE_RS13595 5cb92a111b1088498f97b9cf39074483 607 PANTHER PTHR23115 2 592 7.6E-267 T 23-04-2016 RPE_RS13595 5cb92a111b1088498f97b9cf39074483 607 PANTHER PTHR23115:SF14 2 592 7.6E-267 T 23-04-2016 IPR006298 GTP-binding protein TypA GO:0005525 RPE_RS13595 5cb92a111b1088498f97b9cf39074483 607 Gene3D G3DSA:2.40.50.250 482 576 1.1E-40 T 23-04-2016 RPE_RS13595 5cb92a111b1088498f97b9cf39074483 607 SUPERFAMILY SSF54980 301 386 1.06E-12 T 23-04-2016 IPR009022 Elongation factor G, III-V domain RPE_RS13595 5cb92a111b1088498f97b9cf39074483 607 SUPERFAMILY SSF54980 398 512 1.77E-26 T 23-04-2016 IPR009022 Elongation factor G, III-V domain RPE_RS13595 5cb92a111b1088498f97b9cf39074483 607 PRINTS PR00315 GTP-binding elongation factor signature 121 130 7.7E-15 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS13595 5cb92a111b1088498f97b9cf39074483 607 PRINTS PR00315 GTP-binding elongation factor signature 69 79 7.7E-15 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS13595 5cb92a111b1088498f97b9cf39074483 607 PRINTS PR00315 GTP-binding elongation factor signature 5 18 7.7E-15 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS13595 5cb92a111b1088498f97b9cf39074483 607 PRINTS PR00315 GTP-binding elongation factor signature 49 57 7.7E-15 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS13595 5cb92a111b1088498f97b9cf39074483 607 PRINTS PR00315 GTP-binding elongation factor signature 85 96 7.7E-15 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS13595 5cb92a111b1088498f97b9cf39074483 607 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 1 145 5.0E-25 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RPE_RS13595 5cb92a111b1088498f97b9cf39074483 607 SUPERFAMILY SSF50447 149 296 5.2E-28 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain RPE_RS13595 5cb92a111b1088498f97b9cf39074483 607 Pfam PF00679 Elongation factor G C-terminus 396 481 1.5E-20 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain RPE_RS13595 5cb92a111b1088498f97b9cf39074483 607 SUPERFAMILY SSF52540 3 198 2.59E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS13595 5cb92a111b1088498f97b9cf39074483 607 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 42 57 - T 23-04-2016 IPR031157 Tr-type G domain, conserved site RPE_RS13595 5cb92a111b1088498f97b9cf39074483 607 Gene3D G3DSA:2.40.30.10 203 301 4.3E-22 T 23-04-2016 RPE_RS13595 5cb92a111b1088498f97b9cf39074483 607 Gene3D G3DSA:3.30.70.870 302 399 2.9E-34 T 23-04-2016 RPE_RS13595 5cb92a111b1088498f97b9cf39074483 607 Gene3D G3DSA:3.40.50.300 2 202 2.2E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS09035 183aab8e53a53272263e6d9ddb28464b 379 SUPERFAMILY SSF53901 244 367 1.73E-15 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS09035 183aab8e53a53272263e6d9ddb28464b 379 Gene3D G3DSA:3.40.47.10 148 177 5.5E-9 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS09035 183aab8e53a53272263e6d9ddb28464b 379 Gene3D G3DSA:3.40.47.10 238 368 5.5E-9 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS09035 183aab8e53a53272263e6d9ddb28464b 379 SUPERFAMILY SSF53901 4 222 3.99E-26 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS09035 183aab8e53a53272263e6d9ddb28464b 379 PIRSF PIRSF000429 1 378 4.0E-19 T 23-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RPE_RS09035 183aab8e53a53272263e6d9ddb28464b 379 PANTHER PTHR18919:SF108 1 379 1.7E-180 T 23-04-2016 RPE_RS09035 183aab8e53a53272263e6d9ddb28464b 379 Gene3D G3DSA:3.40.47.10 21 109 1.3E-17 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS09035 183aab8e53a53272263e6d9ddb28464b 379 Gene3D G3DSA:3.40.47.10 192 219 1.3E-17 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS09035 183aab8e53a53272263e6d9ddb28464b 379 PANTHER PTHR18919 1 379 1.7E-180 T 23-04-2016 RPE_RS16100 b1b4cb10d722c16da0739e7b3dfc19d8 794 Gene3D G3DSA:3.30.365.10 301 375 2.2E-30 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS16100 b1b4cb10d722c16da0739e7b3dfc19d8 794 Gene3D G3DSA:3.30.365.10 121 192 2.2E-30 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS16100 b1b4cb10d722c16da0739e7b3dfc19d8 794 Gene3D G3DSA:3.30.365.10 466 624 2.4E-37 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS16100 b1b4cb10d722c16da0739e7b3dfc19d8 794 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 165 722 1.3E-152 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS16100 b1b4cb10d722c16da0739e7b3dfc19d8 794 SMART SM01008 27 132 2.4E-45 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RPE_RS16100 b1b4cb10d722c16da0739e7b3dfc19d8 794 PANTHER PTHR11908:SF95 12 151 8.9E-208 T 23-04-2016 RPE_RS16100 b1b4cb10d722c16da0739e7b3dfc19d8 794 PANTHER PTHR11908:SF95 172 582 8.9E-208 T 23-04-2016 RPE_RS16100 b1b4cb10d722c16da0739e7b3dfc19d8 794 PANTHER PTHR11908:SF95 601 788 8.9E-208 T 23-04-2016 RPE_RS16100 b1b4cb10d722c16da0739e7b3dfc19d8 794 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 27 132 5.5E-29 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RPE_RS16100 b1b4cb10d722c16da0739e7b3dfc19d8 794 Gene3D G3DSA:3.30.365.10 193 299 4.9E-32 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS16100 b1b4cb10d722c16da0739e7b3dfc19d8 794 Gene3D G3DSA:3.30.365.10 640 782 5.0E-65 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS16100 b1b4cb10d722c16da0739e7b3dfc19d8 794 Gene3D G3DSA:3.30.365.10 377 465 5.0E-65 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS16100 b1b4cb10d722c16da0739e7b3dfc19d8 794 SUPERFAMILY SSF56003 124 782 7.72E-181 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS16100 b1b4cb10d722c16da0739e7b3dfc19d8 794 PANTHER PTHR11908 12 151 8.9E-208 T 23-04-2016 RPE_RS16100 b1b4cb10d722c16da0739e7b3dfc19d8 794 PANTHER PTHR11908 172 582 8.9E-208 T 23-04-2016 RPE_RS16100 b1b4cb10d722c16da0739e7b3dfc19d8 794 PANTHER PTHR11908 601 788 8.9E-208 T 23-04-2016 RPE_RS16100 b1b4cb10d722c16da0739e7b3dfc19d8 794 SUPERFAMILY SSF54665 8 150 1.96E-40 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RPE_RS16100 b1b4cb10d722c16da0739e7b3dfc19d8 794 Gene3D G3DSA:3.90.1170.50 5 120 6.7E-43 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RPE_RS14750 fec799e70b34ef1bac1c5c9e9b19184e 239 SUPERFAMILY SSF56784 7 236 7.67E-45 T 23-04-2016 IPR023214 HAD-like domain RPE_RS14750 fec799e70b34ef1bac1c5c9e9b19184e 239 TIGRFAM TIGR01428 HAD_type_II: haloacid dehalogenase, type II 8 208 7.3E-49 T 23-04-2016 IPR006328 Haloacid dehalogenase, type II GO:0008152|GO:0019120 KEGG: 00361+3.8.1.2|KEGG: 00625+3.8.1.2|MetaCyc: PWY-7425 RPE_RS14750 fec799e70b34ef1bac1c5c9e9b19184e 239 TIGRFAM TIGR01493 HAD-SF-IA-v2: HAD hydrolase, family IA, variant 2 9 194 7.3E-24 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RPE_RS14750 fec799e70b34ef1bac1c5c9e9b19184e 239 PANTHER PTHR12725:SF66 1 237 2.7E-67 T 23-04-2016 RPE_RS14750 fec799e70b34ef1bac1c5c9e9b19184e 239 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 165 185 6.6E-10 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RPE_RS14750 fec799e70b34ef1bac1c5c9e9b19184e 239 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 147 163 6.6E-10 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RPE_RS14750 fec799e70b34ef1bac1c5c9e9b19184e 239 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 7 18 6.6E-10 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RPE_RS14750 fec799e70b34ef1bac1c5c9e9b19184e 239 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 192 205 6.6E-10 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RPE_RS14750 fec799e70b34ef1bac1c5c9e9b19184e 239 PANTHER PTHR12725 1 237 2.7E-67 T 23-04-2016 RPE_RS14750 fec799e70b34ef1bac1c5c9e9b19184e 239 Gene3D G3DSA:3.40.50.1000 7 219 2.2E-33 T 23-04-2016 IPR023214 HAD-like domain RPE_RS14750 fec799e70b34ef1bac1c5c9e9b19184e 239 Pfam PF13419 Haloacid dehalogenase-like hydrolase 11 203 1.7E-13 T 23-04-2016 IPR023214 HAD-like domain RPE_RS02430 0e0d53cfa4531475d0b2e89c1f204085 189 Hamap MF_00143 UPF0114 protein YqhA [yqhA]. 1 183 76.393 T 23-04-2016 IPR020765 Uncharacterised protein family UPF0114, gammaproteobacteria GO:0005886 RPE_RS02430 0e0d53cfa4531475d0b2e89c1f204085 189 PANTHER PTHR38596 3 187 1.6E-60 T 23-04-2016 RPE_RS02430 0e0d53cfa4531475d0b2e89c1f204085 189 Pfam PF03350 Uncharacterized protein family, UPF0114 25 141 4.0E-37 T 23-04-2016 IPR005134 Uncharacterised protein family UPF0114 RPE_RS02430 0e0d53cfa4531475d0b2e89c1f204085 189 PANTHER PTHR38596:SF1 3 187 1.6E-60 T 23-04-2016 RPE_RS02430 0e0d53cfa4531475d0b2e89c1f204085 189 TIGRFAM TIGR00645 HI0507: TIGR00645 family protein 19 175 1.1E-49 T 23-04-2016 IPR020761 Uncharacterised protein family UPF0114, bacteria RPE_RS23275 0f46fd7ecf3c471530b9bbda215842c3 248 Pfam PF00072 Response regulator receiver domain 7 116 1.1E-29 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS23275 0f46fd7ecf3c471530b9bbda215842c3 248 PANTHER PTHR26402 5 238 8.5E-127 T 23-04-2016 RPE_RS23275 0f46fd7ecf3c471530b9bbda215842c3 248 SUPERFAMILY SSF46894 131 233 2.52E-23 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RPE_RS23275 0f46fd7ecf3c471530b9bbda215842c3 248 SMART SM00862 156 232 1.3E-22 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS23275 0f46fd7ecf3c471530b9bbda215842c3 248 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 232 4.1E-21 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS23275 0f46fd7ecf3c471530b9bbda215842c3 248 SMART SM00448 5 115 8.3E-42 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS23275 0f46fd7ecf3c471530b9bbda215842c3 248 Gene3D G3DSA:1.10.10.10 136 234 1.3E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS23275 0f46fd7ecf3c471530b9bbda215842c3 248 Gene3D G3DSA:3.40.50.2300 6 125 1.3E-41 T 23-04-2016 RPE_RS23275 0f46fd7ecf3c471530b9bbda215842c3 248 PANTHER PTHR26402:SF528 5 238 8.5E-127 T 23-04-2016 RPE_RS23275 0f46fd7ecf3c471530b9bbda215842c3 248 SUPERFAMILY SSF52172 6 128 2.7E-42 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS05575 0cf2d8a88410e0f67f18d5b8b5d45e8c 378 PANTHER PTHR12526 73 376 2.1E-46 T 23-04-2016 RPE_RS05575 0cf2d8a88410e0f67f18d5b8b5d45e8c 378 PANTHER PTHR12526 14 57 2.1E-46 T 23-04-2016 RPE_RS05575 0cf2d8a88410e0f67f18d5b8b5d45e8c 378 Gene3D G3DSA:3.40.50.2000 179 348 6.0E-19 T 23-04-2016 RPE_RS05575 0cf2d8a88410e0f67f18d5b8b5d45e8c 378 Pfam PF13439 Glycosyltransferase Family 4 30 189 4.6E-10 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RPE_RS05575 0cf2d8a88410e0f67f18d5b8b5d45e8c 378 Pfam PF00534 Glycosyl transferases group 1 197 346 3.3E-22 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 RPE_RS05575 0cf2d8a88410e0f67f18d5b8b5d45e8c 378 SUPERFAMILY SSF53756 15 373 2.1E-56 T 23-04-2016 RPE_RS18675 a7759d1671ab7d19a3ab9a524c85f00b 570 Pfam PF00449 Urease alpha-subunit, N-terminal domain 4 121 1.3E-56 T 23-04-2016 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RPE_RS18675 a7759d1671ab7d19a3ab9a524c85f00b 570 Gene3D G3DSA:2.30.40.10 69 138 9.2E-14 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RPE_RS18675 a7759d1671ab7d19a3ab9a524c85f00b 570 Pfam PF01979 Amidohydrolase family 127 455 8.8E-77 T 23-04-2016 IPR006680 Amidohydrolase-related GO:0016787 RPE_RS18675 a7759d1671ab7d19a3ab9a524c85f00b 570 Gene3D G3DSA:3.20.20.140 490 568 2.2E-211 T 23-04-2016 RPE_RS18675 a7759d1671ab7d19a3ab9a524c85f00b 570 Gene3D G3DSA:3.20.20.140 139 431 2.2E-211 T 23-04-2016 RPE_RS18675 a7759d1671ab7d19a3ab9a524c85f00b 570 PANTHER PTHR22642 322 503 1.0E-263 T 23-04-2016 RPE_RS18675 a7759d1671ab7d19a3ab9a524c85f00b 570 PANTHER PTHR22642:SF7 25 298 1.0E-263 T 23-04-2016 RPE_RS18675 a7759d1671ab7d19a3ab9a524c85f00b 570 PANTHER PTHR22642:SF7 322 503 1.0E-263 T 23-04-2016 RPE_RS18675 a7759d1671ab7d19a3ab9a524c85f00b 570 ProSitePatterns PS00145 Urease active site. 319 335 - T 23-04-2016 IPR017950 Urease active site GO:0009039 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RPE_RS18675 a7759d1671ab7d19a3ab9a524c85f00b 570 Hamap MF_01953 Urease subunit alpha [ureC]. 3 570 55.818 T 23-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RPE_RS18675 a7759d1671ab7d19a3ab9a524c85f00b 570 SUPERFAMILY SSF51338 426 479 2.7E-5 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RPE_RS18675 a7759d1671ab7d19a3ab9a524c85f00b 570 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 429 442 2.4E-34 T 23-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RPE_RS18675 a7759d1671ab7d19a3ab9a524c85f00b 570 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 297 314 2.4E-34 T 23-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RPE_RS18675 a7759d1671ab7d19a3ab9a524c85f00b 570 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 336 352 2.4E-34 T 23-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RPE_RS18675 a7759d1671ab7d19a3ab9a524c85f00b 570 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 403 418 2.4E-34 T 23-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RPE_RS18675 a7759d1671ab7d19a3ab9a524c85f00b 570 ProSitePatterns PS01120 Urease nickel ligands signature. 129 142 - T 23-04-2016 IPR029754 Urease nickel binding site GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RPE_RS18675 a7759d1671ab7d19a3ab9a524c85f00b 570 PANTHER PTHR22642 25 298 1.0E-263 T 23-04-2016 RPE_RS18675 a7759d1671ab7d19a3ab9a524c85f00b 570 SUPERFAMILY SSF51556 483 570 9.18E-198 T 23-04-2016 IPR032466 Metal-dependent hydrolase RPE_RS18675 a7759d1671ab7d19a3ab9a524c85f00b 570 SUPERFAMILY SSF51556 131 434 9.18E-198 T 23-04-2016 IPR032466 Metal-dependent hydrolase RPE_RS18675 a7759d1671ab7d19a3ab9a524c85f00b 570 SUPERFAMILY SSF51338 4 179 9.67E-65 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RPE_RS18675 a7759d1671ab7d19a3ab9a524c85f00b 570 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 4 570 9.0E-294 T 23-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RPE_RS11500 66f9c1c67583fa2bc392f1263211dd50 252 SUPERFAMILY SSF51735 3 231 1.12E-60 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS11500 66f9c1c67583fa2bc392f1263211dd50 252 PANTHER PTHR24322 157 188 2.6E-46 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11500 66f9c1c67583fa2bc392f1263211dd50 252 PANTHER PTHR24322 11 141 2.6E-46 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11500 66f9c1c67583fa2bc392f1263211dd50 252 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RPE_RS11500 66f9c1c67583fa2bc392f1263211dd50 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 5.2E-23 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11500 66f9c1c67583fa2bc392f1263211dd50 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 5.2E-23 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11500 66f9c1c67583fa2bc392f1263211dd50 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 5.2E-23 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11500 66f9c1c67583fa2bc392f1263211dd50 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 5.2E-23 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11500 66f9c1c67583fa2bc392f1263211dd50 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 5.2E-23 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11500 66f9c1c67583fa2bc392f1263211dd50 252 Gene3D G3DSA:3.40.50.720 3 230 1.4E-62 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS11500 66f9c1c67583fa2bc392f1263211dd50 252 Pfam PF00106 short chain dehydrogenase 7 198 7.5E-47 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11500 66f9c1c67583fa2bc392f1263211dd50 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 2.1E-9 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11500 66f9c1c67583fa2bc392f1263211dd50 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 2.1E-9 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11500 66f9c1c67583fa2bc392f1263211dd50 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 2.1E-9 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS14365 50acf167c63dc59d86091c8203871bac 418 Pfam PF00990 Diguanylate cyclase, GGDEF domain 218 373 3.8E-40 T 23-04-2016 IPR000160 GGDEF domain RPE_RS14365 50acf167c63dc59d86091c8203871bac 418 SMART SM00267 208 377 4.5E-49 T 23-04-2016 IPR000160 GGDEF domain RPE_RS14365 50acf167c63dc59d86091c8203871bac 418 PANTHER PTHR10799 248 390 4.3E-27 T 23-04-2016 RPE_RS14365 50acf167c63dc59d86091c8203871bac 418 Gene3D G3DSA:3.30.70.270 220 378 1.6E-48 T 23-04-2016 RPE_RS14365 50acf167c63dc59d86091c8203871bac 418 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 217 376 2.3E-44 T 23-04-2016 IPR000160 GGDEF domain RPE_RS14365 50acf167c63dc59d86091c8203871bac 418 SUPERFAMILY SSF55073 223 375 5.26E-43 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS04495 bed8bb4cd8d85834c83c0db53fff4434 571 Gene3D G3DSA:3.20.20.450 294 538 4.7E-70 T 23-04-2016 IPR001633 EAL domain RPE_RS04495 bed8bb4cd8d85834c83c0db53fff4434 571 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 123 277 1.9E-32 T 23-04-2016 IPR000160 GGDEF domain RPE_RS04495 bed8bb4cd8d85834c83c0db53fff4434 571 PANTHER PTHR10799 494 513 4.2E-80 T 23-04-2016 RPE_RS04495 bed8bb4cd8d85834c83c0db53fff4434 571 SUPERFAMILY SSF55073 129 282 7.53E-43 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS04495 bed8bb4cd8d85834c83c0db53fff4434 571 PANTHER PTHR10799:SF619 494 513 4.2E-80 T 23-04-2016 RPE_RS04495 bed8bb4cd8d85834c83c0db53fff4434 571 Gene3D G3DSA:3.30.450.20 3 112 1.4E-6 T 23-04-2016 RPE_RS04495 bed8bb4cd8d85834c83c0db53fff4434 571 PANTHER PTHR10799:SF619 85 369 4.2E-80 T 23-04-2016 RPE_RS04495 bed8bb4cd8d85834c83c0db53fff4434 571 Pfam PF00563 EAL domain 297 532 1.8E-58 T 23-04-2016 IPR001633 EAL domain RPE_RS04495 bed8bb4cd8d85834c83c0db53fff4434 571 SMART SM00052 291 537 2.0E-73 T 23-04-2016 IPR001633 EAL domain RPE_RS04495 bed8bb4cd8d85834c83c0db53fff4434 571 SMART SM00267 113 281 7.7E-47 T 23-04-2016 IPR000160 GGDEF domain RPE_RS04495 bed8bb4cd8d85834c83c0db53fff4434 571 Pfam PF00990 Diguanylate cyclase, GGDEF domain 124 274 1.2E-38 T 23-04-2016 IPR000160 GGDEF domain RPE_RS04495 bed8bb4cd8d85834c83c0db53fff4434 571 Gene3D G3DSA:3.30.70.270 125 289 1.5E-46 T 23-04-2016 RPE_RS04495 bed8bb4cd8d85834c83c0db53fff4434 571 SUPERFAMILY SSF55785 15 120 2.56E-5 T 23-04-2016 IPR000014 PAS domain RPE_RS04495 bed8bb4cd8d85834c83c0db53fff4434 571 SUPERFAMILY SSF141868 296 538 1.02E-65 T 23-04-2016 IPR001633 EAL domain RPE_RS04495 bed8bb4cd8d85834c83c0db53fff4434 571 PANTHER PTHR10799 85 369 4.2E-80 T 23-04-2016 RPE_RS24075 26ed3673647ac7a3f1371761fbc62241 851 PIRSF PIRSF005496 4 851 0.0 T 23-04-2016 IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB-type RPE_RS24075 26ed3673647ac7a3f1371761fbc62241 851 Pfam PF00271 Helicase conserved C-terminal domain 211 334 8.7E-11 T 23-04-2016 IPR001650 Helicase, C-terminal RPE_RS24075 26ed3673647ac7a3f1371761fbc62241 851 Gene3D G3DSA:3.40.50.300 206 348 1.5E-13 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS24075 26ed3673647ac7a3f1371761fbc62241 851 SUPERFAMILY SSF52540 20 447 5.83E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS24075 26ed3673647ac7a3f1371761fbc62241 851 TIGRFAM TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB 9 850 0.0 T 23-04-2016 IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB-type RPE_RS24075 26ed3673647ac7a3f1371761fbc62241 851 SMART SM00487 7 192 1.3E-12 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RPE_RS24075 26ed3673647ac7a3f1371761fbc62241 851 Gene3D G3DSA:3.40.50.300 9 167 2.0E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS24075 26ed3673647ac7a3f1371761fbc62241 851 PANTHER PTHR18934 9 454 1.6E-161 T 23-04-2016 RPE_RS24075 26ed3673647ac7a3f1371761fbc62241 851 SMART SM00847 395 485 3.6E-18 T 23-04-2016 IPR007502 Helicase-associated domain GO:0004386 RPE_RS24075 26ed3673647ac7a3f1371761fbc62241 851 Pfam PF08482 ATP-dependent helicase C-terminal 705 837 1.4E-51 T 23-04-2016 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal RPE_RS24075 26ed3673647ac7a3f1371761fbc62241 851 SMART SM00490 232 335 1.0E-15 T 23-04-2016 IPR001650 Helicase, C-terminal RPE_RS24075 26ed3673647ac7a3f1371761fbc62241 851 Pfam PF04408 Helicase associated domain (HA2) 396 454 4.2E-13 T 23-04-2016 IPR007502 Helicase-associated domain GO:0004386 RPE_RS13470 7d9ee7437e368abaf8bd117ca9bc8856 460 Gene3D G3DSA:3.30.70.150 6 137 2.5E-44 T 23-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RPE_RS13470 7d9ee7437e368abaf8bd117ca9bc8856 460 ProSitePatterns PS00157 Ribulose bisphosphate carboxylase large chain active site. 187 195 - T 23-04-2016 IPR020878 Ribulose bisphosphate carboxylase, large chain, active site GO:0000287|GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RPE_RS13470 7d9ee7437e368abaf8bd117ca9bc8856 460 SUPERFAMILY SSF54966 2 138 1.57E-47 T 23-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RPE_RS13470 7d9ee7437e368abaf8bd117ca9bc8856 460 PANTHER PTHR23321:SF19 14 445 5.9E-44 T 23-04-2016 RPE_RS13470 7d9ee7437e368abaf8bd117ca9bc8856 460 SUPERFAMILY SSF51649 139 455 4.71E-110 T 23-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RPE_RS13470 7d9ee7437e368abaf8bd117ca9bc8856 460 Gene3D G3DSA:3.20.20.110 138 439 4.2E-112 T 23-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RPE_RS13470 7d9ee7437e368abaf8bd117ca9bc8856 460 Pfam PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain 144 441 1.3E-119 T 23-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RPE_RS13470 7d9ee7437e368abaf8bd117ca9bc8856 460 PANTHER PTHR23321 14 445 5.9E-44 T 23-04-2016 RPE_RS13470 7d9ee7437e368abaf8bd117ca9bc8856 460 Pfam PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain 12 133 3.8E-36 T 23-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RPE_RS13470 7d9ee7437e368abaf8bd117ca9bc8856 460 Hamap MF_01339 Ribulose bisphosphate carboxylase [cbbM]. 1 460 74.151 T 23-04-2016 IPR020871 Ribulose bisphosphate carboxylase GO:0000287|GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RPE_RS03275 02a7943e781d60785782c818a0606171 314 PANTHER PTHR11138 2 300 2.1E-103 T 23-04-2016 RPE_RS03275 02a7943e781d60785782c818a0606171 314 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 3 304 34.813 T 23-04-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RPE_RS03275 02a7943e781d60785782c818a0606171 314 SUPERFAMILY SSF53328 3 208 3.79E-63 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RPE_RS03275 02a7943e781d60785782c818a0606171 314 SUPERFAMILY SSF50486 206 304 1.49E-27 T 23-04-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 RPE_RS03275 02a7943e781d60785782c818a0606171 314 Gene3D G3DSA:3.10.25.10 208 304 5.0E-28 T 23-04-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RPE_RS03275 02a7943e781d60785782c818a0606171 314 Pfam PF02911 Formyl transferase, C-terminal domain 205 301 2.0E-25 T 23-04-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RPE_RS03275 02a7943e781d60785782c818a0606171 314 Pfam PF00551 Formyl transferase 4 181 1.8E-38 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RPE_RS03275 02a7943e781d60785782c818a0606171 314 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 4 301 1.0E-80 T 23-04-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RPE_RS03275 02a7943e781d60785782c818a0606171 314 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 134 157 - T 23-04-2016 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RPE_RS03275 02a7943e781d60785782c818a0606171 314 Gene3D G3DSA:3.40.50.170 2 206 1.2E-69 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RPE_RS12475 2df93db477220b7ec2b54412bd246759 283 Pfam PF13020 Domain of unknown function (DUF3883) 165 260 2.7E-20 T 23-04-2016 IPR024975 Domain of unknown function DUF3883 RPE_RS19115 657e6374130daeb96da2db41bd3ae5dc 375 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 118 1.4E-29 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS19115 657e6374130daeb96da2db41bd3ae5dc 375 SUPERFAMILY SSF47203 221 369 7.41E-37 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS19115 657e6374130daeb96da2db41bd3ae5dc 375 Gene3D G3DSA:2.40.110.10 146 207 2.7E-6 T 23-04-2016 RPE_RS19115 657e6374130daeb96da2db41bd3ae5dc 375 PANTHER PTHR10909:SF302 1 369 4.2E-134 T 23-04-2016 RPE_RS19115 657e6374130daeb96da2db41bd3ae5dc 375 SUPERFAMILY SSF56645 1 212 1.16E-47 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RPE_RS19115 657e6374130daeb96da2db41bd3ae5dc 375 Gene3D G3DSA:1.10.540.10 1 119 1.6E-34 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS19115 657e6374130daeb96da2db41bd3ae5dc 375 PANTHER PTHR10909 1 369 4.2E-134 T 23-04-2016 RPE_RS19115 657e6374130daeb96da2db41bd3ae5dc 375 Gene3D G3DSA:1.20.140.10 208 371 1.7E-35 T 23-04-2016 RPE_RS19115 657e6374130daeb96da2db41bd3ae5dc 375 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 220 368 5.1E-26 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS18905 d97adeb7b813bae1c483817ca1347292 694 SUPERFAMILY SSF52096 3 282 1.66E-67 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS18905 d97adeb7b813bae1c483817ca1347292 694 PANTHER PTHR23309 2 689 0.0 T 23-04-2016 RPE_RS18905 d97adeb7b813bae1c483817ca1347292 694 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 599 685 4.1E-9 T 23-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 RPE_RS18905 d97adeb7b813bae1c483817ca1347292 694 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 477 563 8.7E-22 T 23-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 RPE_RS18905 d97adeb7b813bae1c483817ca1347292 694 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 296 472 8.4E-57 T 23-04-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 RPE_RS18905 d97adeb7b813bae1c483817ca1347292 694 SUPERFAMILY SSF48179 596 687 2.47E-23 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RPE_RS18905 d97adeb7b813bae1c483817ca1347292 694 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 92 112 - T 23-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 RPE_RS18905 d97adeb7b813bae1c483817ca1347292 694 Gene3D G3DSA:1.10.1040.10 479 564 2.0E-17 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RPE_RS18905 d97adeb7b813bae1c483817ca1347292 694 Gene3D G3DSA:3.40.50.720 290 478 1.9E-56 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS18905 d97adeb7b813bae1c483817ca1347292 694 SUPERFAMILY SSF51735 293 473 3.85E-53 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS18905 d97adeb7b813bae1c483817ca1347292 694 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 174 4.8E-40 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RPE_RS18905 d97adeb7b813bae1c483817ca1347292 694 PANTHER PTHR23309:SF9 2 689 0.0 T 23-04-2016 RPE_RS18905 d97adeb7b813bae1c483817ca1347292 694 Gene3D G3DSA:1.10.1040.10 605 688 7.8E-20 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RPE_RS18905 d97adeb7b813bae1c483817ca1347292 694 SUPERFAMILY SSF48179 476 612 5.61E-27 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RPE_RS18905 d97adeb7b813bae1c483817ca1347292 694 Gene3D G3DSA:3.90.226.10 3 280 9.5E-65 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS14600 593ab2ce2afebd99f1282e901a11e1fb 533 PANTHER PTHR30081:SF1 158 216 7.1E-158 T 23-04-2016 RPE_RS14600 593ab2ce2afebd99f1282e901a11e1fb 533 PANTHER PTHR30081:SF1 249 527 7.1E-158 T 23-04-2016 RPE_RS14600 593ab2ce2afebd99f1282e901a11e1fb 533 PANTHER PTHR30081:SF1 23 96 7.1E-158 T 23-04-2016 RPE_RS14600 593ab2ce2afebd99f1282e901a11e1fb 533 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 2 532 44.43 T 23-04-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 RPE_RS14600 593ab2ce2afebd99f1282e901a11e1fb 533 Pfam PF02355 Protein export membrane protein 353 522 2.2E-17 T 23-04-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial RPE_RS14600 593ab2ce2afebd99f1282e901a11e1fb 533 Pfam PF07549 SecD/SecF GG Motif 40 62 1.3E-5 T 23-04-2016 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site RPE_RS14600 593ab2ce2afebd99f1282e901a11e1fb 533 PANTHER PTHR30081 158 216 7.1E-158 T 23-04-2016 RPE_RS14600 593ab2ce2afebd99f1282e901a11e1fb 533 PANTHER PTHR30081 249 527 7.1E-158 T 23-04-2016 RPE_RS14600 593ab2ce2afebd99f1282e901a11e1fb 533 PANTHER PTHR30081 23 96 7.1E-158 T 23-04-2016 RPE_RS14600 593ab2ce2afebd99f1282e901a11e1fb 533 Gene3D G3DSA:1.20.1640.10 329 529 1.7E-28 T 23-04-2016 RPE_RS14600 593ab2ce2afebd99f1282e901a11e1fb 533 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 282 512 1.2E-81 T 23-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RPE_RS14600 593ab2ce2afebd99f1282e901a11e1fb 533 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 46 519 1.3E-150 T 23-04-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 RPE_RS14600 593ab2ce2afebd99f1282e901a11e1fb 533 PRINTS PR00702 Acriflavin resistance protein family signature 421 445 2.6E-7 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS14600 593ab2ce2afebd99f1282e901a11e1fb 533 PRINTS PR00702 Acriflavin resistance protein family signature 496 519 2.6E-7 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS14600 593ab2ce2afebd99f1282e901a11e1fb 533 PRINTS PR00702 Acriflavin resistance protein family signature 368 391 2.6E-7 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS14600 593ab2ce2afebd99f1282e901a11e1fb 533 SUPERFAMILY SSF82866 329 527 8.24E-47 T 23-04-2016 RPE_RS19000 c52451b00dc797282bfd18f9d3e89183 260 PANTHER PTHR10799:SF750 1 249 1.8E-21 T 23-04-2016 RPE_RS19000 c52451b00dc797282bfd18f9d3e89183 260 SMART SM00267 81 252 3.0E-48 T 23-04-2016 IPR000160 GGDEF domain RPE_RS19000 c52451b00dc797282bfd18f9d3e89183 260 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 91 250 2.8E-40 T 23-04-2016 IPR000160 GGDEF domain RPE_RS19000 c52451b00dc797282bfd18f9d3e89183 260 PANTHER PTHR10799 1 249 1.8E-21 T 23-04-2016 RPE_RS19000 c52451b00dc797282bfd18f9d3e89183 260 Pfam PF00990 Diguanylate cyclase, GGDEF domain 93 248 3.3E-38 T 23-04-2016 IPR000160 GGDEF domain RPE_RS19000 c52451b00dc797282bfd18f9d3e89183 260 Gene3D G3DSA:3.30.70.270 93 253 1.3E-46 T 23-04-2016 RPE_RS19000 c52451b00dc797282bfd18f9d3e89183 260 SUPERFAMILY SSF55073 97 251 2.75E-41 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS22030 148533cf86bb740b56a323694236a28d 744 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 1 742 24.393 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RPE_RS22030 148533cf86bb740b56a323694236a28d 744 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 5 18 2.5E-32 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RPE_RS22030 148533cf86bb740b56a323694236a28d 744 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 48 60 2.5E-32 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RPE_RS22030 148533cf86bb740b56a323694236a28d 744 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 398 417 2.5E-32 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RPE_RS22030 148533cf86bb740b56a323694236a28d 744 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 322 338 2.5E-32 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RPE_RS22030 148533cf86bb740b56a323694236a28d 744 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 248 263 2.5E-32 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RPE_RS22030 148533cf86bb740b56a323694236a28d 744 Pfam PF05746 DALR anticodon binding domain 632 730 5.1E-9 T 23-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RPE_RS22030 148533cf86bb740b56a323694236a28d 744 Gene3D G3DSA:1.10.730.10 635 730 3.8E-4 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS22030 148533cf86bb740b56a323694236a28d 744 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 3 508 5.0E-148 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RPE_RS22030 148533cf86bb740b56a323694236a28d 744 SUPERFAMILY SSF109604 352 494 2.76E-16 T 23-04-2016 RPE_RS22030 148533cf86bb740b56a323694236a28d 744 PANTHER PTHR30075 538 544 1.1E-286 T 23-04-2016 RPE_RS22030 148533cf86bb740b56a323694236a28d 744 PANTHER PTHR30075 569 743 1.1E-286 T 23-04-2016 RPE_RS22030 148533cf86bb740b56a323694236a28d 744 PANTHER PTHR30075 1 518 1.1E-286 T 23-04-2016 RPE_RS22030 148533cf86bb740b56a323694236a28d 744 PANTHER PTHR30075:SF2 538 544 1.1E-286 T 23-04-2016 RPE_RS22030 148533cf86bb740b56a323694236a28d 744 PANTHER PTHR30075:SF2 569 743 1.1E-286 T 23-04-2016 RPE_RS22030 148533cf86bb740b56a323694236a28d 744 PANTHER PTHR30075:SF2 1 518 1.1E-286 T 23-04-2016 RPE_RS22030 148533cf86bb740b56a323694236a28d 744 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 4 600 1.5E-201 T 23-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RPE_RS00860 052ecddc8f0ee11e3a426c68147c7910 562 SUPERFAMILY SSF55073 140 297 1.1E-34 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS00860 052ecddc8f0ee11e3a426c68147c7910 562 SMART SM00267 124 296 1.3E-42 T 23-04-2016 IPR000160 GGDEF domain RPE_RS00860 052ecddc8f0ee11e3a426c68147c7910 562 Gene3D G3DSA:3.20.20.450 315 542 2.5E-61 T 23-04-2016 IPR001633 EAL domain RPE_RS00860 052ecddc8f0ee11e3a426c68147c7910 562 SUPERFAMILY SSF141868 315 542 1.18E-61 T 23-04-2016 IPR001633 EAL domain RPE_RS00860 052ecddc8f0ee11e3a426c68147c7910 562 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 133 294 1.7E-31 T 23-04-2016 IPR000160 GGDEF domain RPE_RS00860 052ecddc8f0ee11e3a426c68147c7910 562 Gene3D G3DSA:3.30.70.270 136 303 7.8E-41 T 23-04-2016 RPE_RS00860 052ecddc8f0ee11e3a426c68147c7910 562 PANTHER PTHR33121 260 538 2.4E-49 T 23-04-2016 RPE_RS00860 052ecddc8f0ee11e3a426c68147c7910 562 PANTHER PTHR33121 119 126 2.4E-49 T 23-04-2016 RPE_RS00860 052ecddc8f0ee11e3a426c68147c7910 562 Gene3D G3DSA:3.30.450.20 9 119 6.5E-5 T 23-04-2016 RPE_RS00860 052ecddc8f0ee11e3a426c68147c7910 562 Pfam PF00990 Diguanylate cyclase, GGDEF domain 135 290 5.4E-32 T 23-04-2016 IPR000160 GGDEF domain RPE_RS00860 052ecddc8f0ee11e3a426c68147c7910 562 PANTHER PTHR33121:SF10 260 538 2.4E-49 T 23-04-2016 RPE_RS00860 052ecddc8f0ee11e3a426c68147c7910 562 PANTHER PTHR33121:SF10 119 126 2.4E-49 T 23-04-2016 RPE_RS00860 052ecddc8f0ee11e3a426c68147c7910 562 Pfam PF00563 EAL domain 318 541 1.2E-60 T 23-04-2016 IPR001633 EAL domain RPE_RS00860 052ecddc8f0ee11e3a426c68147c7910 562 SMART SM00052 308 549 5.2E-51 T 23-04-2016 IPR001633 EAL domain RPE_RS18800 ab5afd58d892246d06f15b64488222f7 279 SUPERFAMILY SSF50044 58 106 7.4E-5 T 23-04-2016 IPR001452 SH3 domain GO:0005515 RPE_RS18800 ab5afd58d892246d06f15b64488222f7 279 PANTHER PTHR21666 160 274 8.5E-15 T 23-04-2016 RPE_RS18800 ab5afd58d892246d06f15b64488222f7 279 Pfam PF00877 NlpC/P60 family 170 253 2.1E-15 T 23-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RPE_RS18800 ab5afd58d892246d06f15b64488222f7 279 Gene3D G3DSA:2.30.30.40 49 100 3.7E-4 T 23-04-2016 RPE_RS18800 ab5afd58d892246d06f15b64488222f7 279 SUPERFAMILY SSF54001 147 278 1.37E-33 T 23-04-2016 RPE_RS18800 ab5afd58d892246d06f15b64488222f7 279 Gene3D G3DSA:3.90.1720.10 152 277 4.0E-28 T 23-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RPE_RS16355 2cd8b9007197f44480db05cbb8a3e56c 535 Pfam PF00958 GMP synthase C terminal domain 443 534 1.2E-43 T 23-04-2016 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 RPE_RS16355 2cd8b9007197f44480db05cbb8a3e56c 535 Gene3D G3DSA:3.40.50.880 20 232 8.6E-59 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RPE_RS16355 2cd8b9007197f44480db05cbb8a3e56c 535 Pfam PF02540 NAD synthase 234 268 6.8E-6 T 23-04-2016 IPR022310 NAD/GMP synthase RPE_RS16355 2cd8b9007197f44480db05cbb8a3e56c 535 SUPERFAMILY SSF52317 20 247 9.62E-56 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RPE_RS16355 2cd8b9007197f44480db05cbb8a3e56c 535 Pfam PF00117 Glutamine amidotransferase class-I 27 209 9.8E-37 T 23-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 RPE_RS16355 2cd8b9007197f44480db05cbb8a3e56c 535 Gene3D G3DSA:3.40.50.620 233 407 9.7E-59 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS16355 2cd8b9007197f44480db05cbb8a3e56c 535 PANTHER PTHR11922:SF2 6 532 1.5E-279 T 23-04-2016 RPE_RS16355 2cd8b9007197f44480db05cbb8a3e56c 535 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 223 535 8.5E-145 T 23-04-2016 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 RPE_RS16355 2cd8b9007197f44480db05cbb8a3e56c 535 Gene3D G3DSA:3.30.300.10 411 535 5.3E-52 T 23-04-2016 RPE_RS16355 2cd8b9007197f44480db05cbb8a3e56c 535 SUPERFAMILY SSF52402 207 428 5.07E-58 T 23-04-2016 RPE_RS16355 2cd8b9007197f44480db05cbb8a3e56c 535 PANTHER PTHR11922 6 532 1.5E-279 T 23-04-2016 RPE_RS16355 2cd8b9007197f44480db05cbb8a3e56c 535 PRINTS PR00096 Glutamine amidotransferase superfamily signature 69 78 9.4E-8 T 23-04-2016 RPE_RS16355 2cd8b9007197f44480db05cbb8a3e56c 535 PRINTS PR00096 Glutamine amidotransferase superfamily signature 96 107 9.4E-8 T 23-04-2016 RPE_RS16355 2cd8b9007197f44480db05cbb8a3e56c 535 PRINTS PR00096 Glutamine amidotransferase superfamily signature 187 200 9.4E-8 T 23-04-2016 RPE_RS16355 2cd8b9007197f44480db05cbb8a3e56c 535 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 22 535 53.77 T 23-04-2016 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 RPE_RS16355 2cd8b9007197f44480db05cbb8a3e56c 535 SUPERFAMILY SSF54810 415 535 1.05E-51 T 23-04-2016 RPE_RS16355 2cd8b9007197f44480db05cbb8a3e56c 535 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 25 213 1.1E-69 T 23-04-2016 IPR004739 GMP synthase, N-terminal GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 RPE_RS16355 2cd8b9007197f44480db05cbb8a3e56c 535 PRINTS PR00097 Anthranilate synthase component II signature 187 200 3.6E-6 T 23-04-2016 RPE_RS16355 2cd8b9007197f44480db05cbb8a3e56c 535 PRINTS PR00097 Anthranilate synthase component II signature 96 107 3.6E-6 T 23-04-2016 RPE_RS16355 2cd8b9007197f44480db05cbb8a3e56c 535 PRINTS PR00097 Anthranilate synthase component II signature 69 78 3.6E-6 T 23-04-2016 RPE_RS08280 dc10e5d2bdc808efb7eddfd31520a3cc 215 Pfam PF13499 EF-hand domain pair 124 180 2.2E-9 T 23-04-2016 IPR002048 EF-hand domain GO:0005509 RPE_RS08280 dc10e5d2bdc808efb7eddfd31520a3cc 215 SUPERFAMILY SSF47473 119 184 4.78E-13 T 23-04-2016 IPR011992 EF-hand domain pair RPE_RS08280 dc10e5d2bdc808efb7eddfd31520a3cc 215 SMART SM00054 125 153 0.0062 T 23-04-2016 IPR002048 EF-hand domain GO:0005509 RPE_RS08280 dc10e5d2bdc808efb7eddfd31520a3cc 215 SMART SM00054 159 187 1.0 T 23-04-2016 IPR002048 EF-hand domain GO:0005509 RPE_RS08280 dc10e5d2bdc808efb7eddfd31520a3cc 215 Gene3D G3DSA:1.10.238.10 134 184 5.6E-14 T 23-04-2016 IPR011992 EF-hand domain pair RPE_RS08280 dc10e5d2bdc808efb7eddfd31520a3cc 215 ProSitePatterns PS00018 EF-hand calcium-binding domain. 134 146 - T 23-04-2016 IPR018247 EF-Hand 1, calcium-binding site RPE_RS08280 dc10e5d2bdc808efb7eddfd31520a3cc 215 ProSitePatterns PS00018 EF-hand calcium-binding domain. 168 180 - T 23-04-2016 IPR018247 EF-Hand 1, calcium-binding site RPE_RS08280 dc10e5d2bdc808efb7eddfd31520a3cc 215 Gene3D G3DSA:1.10.238.10 86 133 3.0E-4 T 23-04-2016 IPR011992 EF-hand domain pair RPE_RS05395 c6b1b28276e11ee857c9a5f22ea9a7c8 81 SUPERFAMILY SSF116842 6 70 2.88E-21 T 23-04-2016 RPE_RS05395 c6b1b28276e11ee857c9a5f22ea9a7c8 81 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 8 52 3.0E-18 T 23-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RPE_RS05395 c6b1b28276e11ee857c9a5f22ea9a7c8 81 PIRSF PIRSF006488 1 80 2.1E-24 T 23-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RPE_RS05395 c6b1b28276e11ee857c9a5f22ea9a7c8 81 Gene3D G3DSA:1.10.287.1040 6 72 2.4E-27 T 23-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RPE_RS05395 c6b1b28276e11ee857c9a5f22ea9a7c8 81 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 11 66 2.7E-24 T 23-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RPE_RS05395 c6b1b28276e11ee857c9a5f22ea9a7c8 81 Pfam PF02609 Exonuclease VII small subunit 12 63 1.2E-20 T 23-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RPE_RS05395 c6b1b28276e11ee857c9a5f22ea9a7c8 81 PANTHER PTHR34137 1 81 1.1E-23 T 23-04-2016 RPE_RS05395 c6b1b28276e11ee857c9a5f22ea9a7c8 81 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 11 71 16.217 T 23-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RPE_RS15030 d8ed3eb8e4ff5682b440673d29b9387a 229 Gene3D G3DSA:3.40.50.150 59 204 1.2E-21 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS15030 d8ed3eb8e4ff5682b440673d29b9387a 229 PANTHER PTHR11558:SF4 59 195 4.8E-40 T 23-04-2016 RPE_RS15030 d8ed3eb8e4ff5682b440673d29b9387a 229 PANTHER PTHR11558 59 195 4.8E-40 T 23-04-2016 RPE_RS15030 d8ed3eb8e4ff5682b440673d29b9387a 229 SUPERFAMILY SSF53335 44 205 5.79E-23 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS19630 1162f8bdd0b4e0ab5f76f5ca7316cced 163 PANTHER PTHR22617 12 155 2.3E-22 T 23-04-2016 RPE_RS19630 1162f8bdd0b4e0ab5f76f5ca7316cced 163 SUPERFAMILY SSF50341 16 155 7.98E-29 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS19630 1162f8bdd0b4e0ab5f76f5ca7316cced 163 Pfam PF01584 CheW-like domain 21 155 7.7E-27 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS19630 1162f8bdd0b4e0ab5f76f5ca7316cced 163 Gene3D G3DSA:2.40.50.180 59 88 7.7E-4 T 23-04-2016 RPE_RS19630 1162f8bdd0b4e0ab5f76f5ca7316cced 163 SMART SM00260 17 154 1.5E-22 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS24450 351ca8c47a4e050100e8ca01d1587869 415 Pfam PF00989 PAS fold 68 137 5.9E-5 T 23-04-2016 IPR013767 PAS fold GO:0006355 RPE_RS24450 351ca8c47a4e050100e8ca01d1587869 415 PANTHER PTHR24423:SF554 68 407 1.8E-107 T 23-04-2016 RPE_RS24450 351ca8c47a4e050100e8ca01d1587869 415 SUPERFAMILY SSF47384 167 245 2.75E-18 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS24450 351ca8c47a4e050100e8ca01d1587869 415 SUPERFAMILY SSF55785 68 172 3.26E-6 T 23-04-2016 IPR000014 PAS domain RPE_RS24450 351ca8c47a4e050100e8ca01d1587869 415 PRINTS PR00344 Bacterial sensor protein C-terminal signature 353 363 1.3E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS24450 351ca8c47a4e050100e8ca01d1587869 415 PRINTS PR00344 Bacterial sensor protein C-terminal signature 370 388 1.3E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS24450 351ca8c47a4e050100e8ca01d1587869 415 PRINTS PR00344 Bacterial sensor protein C-terminal signature 335 349 1.3E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS24450 351ca8c47a4e050100e8ca01d1587869 415 PRINTS PR00344 Bacterial sensor protein C-terminal signature 394 407 1.3E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS24450 351ca8c47a4e050100e8ca01d1587869 415 PANTHER PTHR24423 68 407 1.8E-107 T 23-04-2016 RPE_RS24450 351ca8c47a4e050100e8ca01d1587869 415 SMART SM00387 293 410 2.9E-33 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS24450 351ca8c47a4e050100e8ca01d1587869 415 SUPERFAMILY SSF55874 236 408 1.23E-40 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS24450 351ca8c47a4e050100e8ca01d1587869 415 Pfam PF00512 His Kinase A (phospho-acceptor) domain 181 245 9.8E-17 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS24450 351ca8c47a4e050100e8ca01d1587869 415 Gene3D G3DSA:3.30.565.10 234 408 1.0E-40 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS24450 351ca8c47a4e050100e8ca01d1587869 415 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 293 408 7.9E-20 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS24450 351ca8c47a4e050100e8ca01d1587869 415 Gene3D G3DSA:1.10.287.130 173 233 7.2E-19 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS24450 351ca8c47a4e050100e8ca01d1587869 415 Gene3D G3DSA:3.30.450.20 68 172 2.5E-8 T 23-04-2016 RPE_RS24450 351ca8c47a4e050100e8ca01d1587869 415 SMART SM00388 180 247 2.2E-19 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS00535 057dff68255d7c5a70c0cf42ec32c703 376 SUPERFAMILY SSF53850 68 276 6.6E-21 T 23-04-2016 RPE_RS00535 057dff68255d7c5a70c0cf42ec32c703 376 PANTHER PTHR31528 67 376 1.3E-152 T 23-04-2016 IPR027939 NMT1/THI5 family GO:0009228 UniPathway: UPA00060 RPE_RS00535 057dff68255d7c5a70c0cf42ec32c703 376 Pfam PF09084 NMT1/THI5 like 79 278 9.9E-25 T 23-04-2016 IPR015168 SsuA/THI5-like RPE_RS00535 057dff68255d7c5a70c0cf42ec32c703 376 PANTHER PTHR31528:SF6 67 376 1.3E-152 T 23-04-2016 RPE_RS00040 594d1a15de7bf1be3130fdc59364c933 169 PANTHER PTHR30154 7 165 6.8E-95 T 23-04-2016 RPE_RS00040 594d1a15de7bf1be3130fdc59364c933 169 SMART SM00344 15 124 3.5E-44 T 23-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RPE_RS00040 594d1a15de7bf1be3130fdc59364c933 169 SUPERFAMILY SSF46785 14 74 1.06E-16 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS00040 594d1a15de7bf1be3130fdc59364c933 169 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 15 31 6.9E-15 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RPE_RS00040 594d1a15de7bf1be3130fdc59364c933 169 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 42 61 6.9E-15 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RPE_RS00040 594d1a15de7bf1be3130fdc59364c933 169 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 42 6.9E-15 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RPE_RS00040 594d1a15de7bf1be3130fdc59364c933 169 ProSitePatterns PS00519 AsnC-type HTH domain signature. 33 59 - T 23-04-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RPE_RS00040 594d1a15de7bf1be3130fdc59364c933 169 Pfam PF13404 AsnC-type helix-turn-helix domain 15 56 7.1E-19 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RPE_RS00040 594d1a15de7bf1be3130fdc59364c933 169 Gene3D G3DSA:1.10.10.10 16 67 9.0E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS00040 594d1a15de7bf1be3130fdc59364c933 169 Gene3D G3DSA:3.30.70.920 68 151 5.6E-29 T 23-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RPE_RS00040 594d1a15de7bf1be3130fdc59364c933 169 PANTHER PTHR30154:SF17 7 165 6.8E-95 T 23-04-2016 RPE_RS00040 594d1a15de7bf1be3130fdc59364c933 169 SUPERFAMILY SSF54909 76 156 1.47E-18 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RPE_RS00040 594d1a15de7bf1be3130fdc59364c933 169 Pfam PF01037 Lrp/AsnC ligand binding domain 80 153 6.7E-20 T 23-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RPE_RS16045 9691034a3efc950ec01b01895486e1de 305 SUPERFAMILY SSF52210 121 288 2.35E-44 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RPE_RS16045 9691034a3efc950ec01b01895486e1de 305 Pfam PF02629 CoA binding domain 5 97 9.5E-22 T 23-04-2016 IPR003781 CoA-binding GO:0048037 RPE_RS16045 9691034a3efc950ec01b01895486e1de 305 SMART SM00881 2 98 2.6E-24 T 23-04-2016 IPR003781 CoA-binding GO:0048037 RPE_RS16045 9691034a3efc950ec01b01895486e1de 305 PIRSF PIRSF001553 1 291 2.7E-101 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RPE_RS16045 9691034a3efc950ec01b01895486e1de 305 Gene3D G3DSA:3.40.50.720 1 117 3.9E-42 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS16045 9691034a3efc950ec01b01895486e1de 305 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 146 285 5.5E-16 T 23-04-2016 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain RPE_RS16045 9691034a3efc950ec01b01895486e1de 305 SUPERFAMILY SSF51735 3 120 8.47E-35 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS16045 9691034a3efc950ec01b01895486e1de 305 Gene3D G3DSA:3.40.50.261 118 285 5.6E-56 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RPE_RS16045 9691034a3efc950ec01b01895486e1de 305 PRINTS PR01798 Succinyl-CoA synthase signature 80 97 7.7E-27 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RPE_RS16045 9691034a3efc950ec01b01895486e1de 305 PRINTS PR01798 Succinyl-CoA synthase signature 240 257 7.7E-27 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RPE_RS16045 9691034a3efc950ec01b01895486e1de 305 PRINTS PR01798 Succinyl-CoA synthase signature 209 222 7.7E-27 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RPE_RS16045 9691034a3efc950ec01b01895486e1de 305 PRINTS PR01798 Succinyl-CoA synthase signature 178 196 7.7E-27 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RPE_RS16045 9691034a3efc950ec01b01895486e1de 305 PANTHER PTHR11117 1 289 5.5E-116 T 23-04-2016 RPE_RS15500 8a5b03ad60ea5bd4075b0172f3d69ad3 224 Gene3D G3DSA:1.20.950.20 36 184 5.4E-5 T 23-04-2016 RPE_RS15500 8a5b03ad60ea5bd4075b0172f3d69ad3 224 Pfam PF01292 Prokaryotic cytochrome b561 10 180 1.1E-13 T 23-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 RPE_RS15500 8a5b03ad60ea5bd4075b0172f3d69ad3 224 SUPERFAMILY SSF81342 5 186 5.65E-27 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 RPE_RS04905 aa01e0819df8d85497ccdb8e2346d763 369 PANTHER PTHR23274 3 364 1.4E-38 T 23-04-2016 IPR003840 DNA helicase GO:0004386|GO:0005524 RPE_RS04905 aa01e0819df8d85497ccdb8e2346d763 369 Gene3D G3DSA:3.40.50.300 7 128 4.5E-8 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS04905 aa01e0819df8d85497ccdb8e2346d763 369 SUPERFAMILY SSF52540 3 368 4.35E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS04905 aa01e0819df8d85497ccdb8e2346d763 369 Pfam PF13538 UvrD-like helicase C-terminal domain 320 368 2.9E-19 T 23-04-2016 IPR027785 UvrD-like helicase C-terminal domain RPE_RS04905 aa01e0819df8d85497ccdb8e2346d763 369 Gene3D G3DSA:3.40.50.300 309 368 4.4E-26 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS04905 aa01e0819df8d85497ccdb8e2346d763 369 Gene3D G3DSA:3.40.50.300 132 235 4.4E-26 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS04905 aa01e0819df8d85497ccdb8e2346d763 369 PANTHER PTHR23274:SF1 3 364 1.4E-38 T 23-04-2016 RPE_RS04905 aa01e0819df8d85497ccdb8e2346d763 369 Pfam PF13604 AAA domain 34 201 1.2E-25 T 23-04-2016 RPE_RS18560 8cc194ef73c225b1982bf9cc7fc14a82 951 Gene3D G3DSA:3.40.50.10490 451 570 1.1E-27 T 23-04-2016 RPE_RS18560 8cc194ef73c225b1982bf9cc7fc14a82 951 TIGRFAM TIGR00876 tal_mycobact: transaldolase 12 364 1.0E-93 T 23-04-2016 IPR004732 Transaldolase type 2 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RPE_RS18560 8cc194ef73c225b1982bf9cc7fc14a82 951 ProSitePatterns PS00958 Transaldolase active site. 137 154 - T 23-04-2016 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RPE_RS18560 8cc194ef73c225b1982bf9cc7fc14a82 951 Gene3D G3DSA:3.20.20.70 1 367 2.4E-118 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS18560 8cc194ef73c225b1982bf9cc7fc14a82 951 Pfam PF00342 Phosphoglucose isomerase 452 666 5.2E-17 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RPE_RS18560 8cc194ef73c225b1982bf9cc7fc14a82 951 ProSitePatterns PS01054 Transaldolase signature 1. 40 48 - T 23-04-2016 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RPE_RS18560 8cc194ef73c225b1982bf9cc7fc14a82 951 Hamap MF_00493 Transaldolase [tal]. 1 377 130.542 T 23-04-2016 IPR004732 Transaldolase type 2 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RPE_RS18560 8cc194ef73c225b1982bf9cc7fc14a82 951 PANTHER PTHR10683:SF6 1 375 9.8E-118 T 23-04-2016 RPE_RS18560 8cc194ef73c225b1982bf9cc7fc14a82 951 Pfam PF00923 Transaldolase 14 365 2.4E-86 T 23-04-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RPE_RS18560 8cc194ef73c225b1982bf9cc7fc14a82 951 SUPERFAMILY SSF51569 2 370 1.22E-81 T 23-04-2016 RPE_RS18560 8cc194ef73c225b1982bf9cc7fc14a82 951 PANTHER PTHR10683 1 375 9.8E-118 T 23-04-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RPE_RS18560 8cc194ef73c225b1982bf9cc7fc14a82 951 SUPERFAMILY SSF53697 304 793 7.97E-92 T 23-04-2016 RPE_RS18560 8cc194ef73c225b1982bf9cc7fc14a82 951 Gene3D G3DSA:3.40.50.10490 855 931 1.3E-9 T 23-04-2016 RPE_RS18560 8cc194ef73c225b1982bf9cc7fc14a82 951 Gene3D G3DSA:3.40.50.10490 571 675 2.5E-31 T 23-04-2016 RPE_RS18560 8cc194ef73c225b1982bf9cc7fc14a82 951 PRINTS PR00662 Glucose-6-phosphate isomerase signature 570 588 5.0E-10 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RPE_RS18560 8cc194ef73c225b1982bf9cc7fc14a82 951 PRINTS PR00662 Glucose-6-phosphate isomerase signature 458 477 5.0E-10 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RPE_RS18560 8cc194ef73c225b1982bf9cc7fc14a82 951 PRINTS PR00662 Glucose-6-phosphate isomerase signature 645 666 5.0E-10 T 23-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 RPE_RS18560 8cc194ef73c225b1982bf9cc7fc14a82 951 Gene3D G3DSA:3.40.50.10490 708 776 1.1E-10 T 23-04-2016 RPE_RS10945 80a52bf9e109dc5533fb00c2ead2c2d7 365 PANTHER PTHR30298 1 365 3.3E-67 T 23-04-2016 RPE_RS10945 80a52bf9e109dc5533fb00c2ead2c2d7 365 Pfam PF13808 DDE_Tnp_1-associated 6 91 4.8E-27 T 23-04-2016 IPR032806 H repeat-associated protein, N-terminal RPE_RS10945 80a52bf9e109dc5533fb00c2ead2c2d7 365 Pfam PF01609 Transposase DDE domain 103 331 6.3E-19 T 23-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 RPE_RS22395 80a52bf9e109dc5533fb00c2ead2c2d7 365 PANTHER PTHR30298 1 365 3.3E-67 T 23-04-2016 RPE_RS22395 80a52bf9e109dc5533fb00c2ead2c2d7 365 Pfam PF13808 DDE_Tnp_1-associated 6 91 4.8E-27 T 23-04-2016 IPR032806 H repeat-associated protein, N-terminal RPE_RS22395 80a52bf9e109dc5533fb00c2ead2c2d7 365 Pfam PF01609 Transposase DDE domain 103 331 6.3E-19 T 23-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 RPE_RS09560 80a52bf9e109dc5533fb00c2ead2c2d7 365 PANTHER PTHR30298 1 365 3.3E-67 T 23-04-2016 RPE_RS09560 80a52bf9e109dc5533fb00c2ead2c2d7 365 Pfam PF13808 DDE_Tnp_1-associated 6 91 4.8E-27 T 23-04-2016 IPR032806 H repeat-associated protein, N-terminal RPE_RS09560 80a52bf9e109dc5533fb00c2ead2c2d7 365 Pfam PF01609 Transposase DDE domain 103 331 6.3E-19 T 23-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 RPE_RS01255 80a52bf9e109dc5533fb00c2ead2c2d7 365 PANTHER PTHR30298 1 365 3.3E-67 T 23-04-2016 RPE_RS01255 80a52bf9e109dc5533fb00c2ead2c2d7 365 Pfam PF13808 DDE_Tnp_1-associated 6 91 4.8E-27 T 23-04-2016 IPR032806 H repeat-associated protein, N-terminal RPE_RS01255 80a52bf9e109dc5533fb00c2ead2c2d7 365 Pfam PF01609 Transposase DDE domain 103 331 6.3E-19 T 23-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 RPE_RS17485 dddd9fddd2a6e7995d999b9cd1f100f0 459 Gene3D G3DSA:2.160.20.10 134 416 4.6E-13 T 23-04-2016 IPR012334 Pectin lyase fold RPE_RS17485 dddd9fddd2a6e7995d999b9cd1f100f0 459 Gene3D G3DSA:2.160.20.10 17 62 4.6E-13 T 23-04-2016 IPR012334 Pectin lyase fold RPE_RS17485 dddd9fddd2a6e7995d999b9cd1f100f0 459 SMART SM00710 187 209 1.4 T 23-04-2016 IPR006626 Parallel beta-helix repeat RPE_RS17485 dddd9fddd2a6e7995d999b9cd1f100f0 459 SMART SM00710 230 261 990.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RPE_RS17485 dddd9fddd2a6e7995d999b9cd1f100f0 459 SMART SM00710 262 283 540.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RPE_RS17485 dddd9fddd2a6e7995d999b9cd1f100f0 459 SMART SM00710 377 402 1500.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RPE_RS17485 dddd9fddd2a6e7995d999b9cd1f100f0 459 SMART SM00710 340 363 4800.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RPE_RS17485 dddd9fddd2a6e7995d999b9cd1f100f0 459 SMART SM00710 309 333 8400.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RPE_RS17485 dddd9fddd2a6e7995d999b9cd1f100f0 459 SUPERFAMILY SSF51126 6 72 2.28E-26 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor RPE_RS17485 dddd9fddd2a6e7995d999b9cd1f100f0 459 SUPERFAMILY SSF51126 151 421 2.28E-26 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor RPE_RS17485 dddd9fddd2a6e7995d999b9cd1f100f0 459 Pfam PF13229 Right handed beta helix region 189 349 4.7E-15 T 23-04-2016 RPE_RS06770 67ddc087af430a18ea1c3f2b3afaae34 229 PIRSF PIRSF000343 1 228 1.3E-60 T 23-04-2016 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: REACT_9431 RPE_RS06770 67ddc087af430a18ea1c3f2b3afaae34 229 Gene3D G3DSA:1.20.910.10 7 221 1.7E-47 T 23-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 RPE_RS06770 67ddc087af430a18ea1c3f2b3afaae34 229 Pfam PF01126 Heme oxygenase 17 211 1.3E-40 T 23-04-2016 IPR016053 Haem oxygenase-like GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: REACT_9431 RPE_RS06770 67ddc087af430a18ea1c3f2b3afaae34 229 ProSitePatterns PS00593 Heme oxygenase signature. 129 139 - T 23-04-2016 IPR018207 Haem oxygenase conserved site GO:0004392|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: REACT_9431 RPE_RS06770 67ddc087af430a18ea1c3f2b3afaae34 229 SUPERFAMILY SSF48613 13 217 1.31E-47 T 23-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 RPE_RS06770 67ddc087af430a18ea1c3f2b3afaae34 229 PANTHER PTHR10720 22 211 2.6E-30 T 23-04-2016 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: REACT_9431 RPE_RS06770 67ddc087af430a18ea1c3f2b3afaae34 229 PRINTS PR00088 Haem oxygenase signature 126 147 6.0E-17 T 23-04-2016 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: REACT_9431 RPE_RS06770 67ddc087af430a18ea1c3f2b3afaae34 229 PRINTS PR00088 Haem oxygenase signature 200 218 6.0E-17 T 23-04-2016 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: REACT_9431 RPE_RS06770 67ddc087af430a18ea1c3f2b3afaae34 229 PRINTS PR00088 Haem oxygenase signature 13 38 6.0E-17 T 23-04-2016 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: REACT_9431 RPE_RS06770 67ddc087af430a18ea1c3f2b3afaae34 229 PRINTS PR00088 Haem oxygenase signature 48 73 6.0E-17 T 23-04-2016 IPR002051 Haem oxygenase GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: REACT_9431 RPE_RS17840 723ee99e33499771515f08107236f73e 136 Gene3D G3DSA:3.90.1030.10 1 117 1.6E-51 T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17840 723ee99e33499771515f08107236f73e 136 SUPERFAMILY SSF64263 1 119 7.98E-52 T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17840 723ee99e33499771515f08107236f73e 136 PANTHER PTHR14413:SF5 1 130 1.0E-70 T 23-04-2016 RPE_RS17840 723ee99e33499771515f08107236f73e 136 PANTHER PTHR14413 1 130 1.0E-70 T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17840 723ee99e33499771515f08107236f73e 136 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 25.916 T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17840 723ee99e33499771515f08107236f73e 136 Pfam PF01196 Ribosomal protein L17 20 116 1.5E-37 T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17840 723ee99e33499771515f08107236f73e 136 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17840 723ee99e33499771515f08107236f73e 136 TIGRFAM TIGR00059 L17: ribosomal protein bL17 8 117 2.1E-43 T 23-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS22090 0a11b7b4b52563ec0b63da1c5d7ee6d1 273 SMART SM00986 111 261 1.1E-36 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like RPE_RS22090 0a11b7b4b52563ec0b63da1c5d7ee6d1 273 SMART SM00987 111 261 1.1E-36 T 23-04-2016 RPE_RS22090 0a11b7b4b52563ec0b63da1c5d7ee6d1 273 Gene3D G3DSA:3.40.470.10 86 270 3.8E-66 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like RPE_RS22090 0a11b7b4b52563ec0b63da1c5d7ee6d1 273 PANTHER PTHR33693:SF1 1 273 1.4E-91 T 23-04-2016 RPE_RS22090 0a11b7b4b52563ec0b63da1c5d7ee6d1 273 PANTHER PTHR33693 1 273 1.4E-91 T 23-04-2016 RPE_RS22090 0a11b7b4b52563ec0b63da1c5d7ee6d1 273 SUPERFAMILY SSF52141 83 267 4.58E-62 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like RPE_RS22090 0a11b7b4b52563ec0b63da1c5d7ee6d1 273 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 98 267 1.1E-62 T 23-04-2016 IPR005273 Uracil-DNA glycosylase, family 4 domain RPE_RS22090 0a11b7b4b52563ec0b63da1c5d7ee6d1 273 Pfam PF03167 Uracil DNA glycosylase superfamily 113 261 7.0E-44 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like RPE_RS13925 3dc17b98f92450784c723a6eaa8c14d3 326 PANTHER PTHR10314:SF110 16 326 2.8E-158 T 23-04-2016 RPE_RS13925 3dc17b98f92450784c723a6eaa8c14d3 326 TIGRFAM TIGR01136 cysKM: cysteine synthase 24 323 4.9E-130 T 23-04-2016 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936|UniPathway: UPA00136 RPE_RS13925 3dc17b98f92450784c723a6eaa8c14d3 326 Gene3D G3DSA:3.40.50.1100 153 324 5.9E-74 T 23-04-2016 RPE_RS13925 3dc17b98f92450784c723a6eaa8c14d3 326 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 25 311 3.4E-65 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RPE_RS13925 3dc17b98f92450784c723a6eaa8c14d3 326 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 51 69 - T 23-04-2016 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 RPE_RS13925 3dc17b98f92450784c723a6eaa8c14d3 326 PANTHER PTHR10314 16 326 2.8E-158 T 23-04-2016 RPE_RS13925 3dc17b98f92450784c723a6eaa8c14d3 326 SUPERFAMILY SSF53686 19 323 4.71E-97 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RPE_RS13925 3dc17b98f92450784c723a6eaa8c14d3 326 Gene3D G3DSA:3.40.50.1100 56 152 5.3E-36 T 23-04-2016 RPE_RS13925 3dc17b98f92450784c723a6eaa8c14d3 326 TIGRFAM TIGR01139 cysK: cysteine synthase A 25 323 8.4E-133 T 23-04-2016 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936|UniPathway: UPA00136 RPE_RS09040 ba104c78eca210658de68ae7639010b0 137 PANTHER PTHR34075 1 125 2.7E-55 T 23-04-2016 RPE_RS09040 ba104c78eca210658de68ae7639010b0 137 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 58 121 4.1E-19 T 23-04-2016 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal RPE_RS09040 ba104c78eca210658de68ae7639010b0 137 Pfam PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) 19 54 9.2E-14 T 23-04-2016 IPR022002 Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal RPE_RS09040 ba104c78eca210658de68ae7639010b0 137 SUPERFAMILY SSF50249 4 129 2.91E-37 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS09040 ba104c78eca210658de68ae7639010b0 137 PANTHER PTHR34075:SF2 1 125 2.7E-55 T 23-04-2016 RPE_RS11955 db4e6d0ed5dccd77a96acc6e1b404476 498 Gene3D G3DSA:3.40.309.10 261 443 1.8E-62 T 23-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RPE_RS11955 db4e6d0ed5dccd77a96acc6e1b404476 498 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 274 285 - T 23-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 RPE_RS11955 db4e6d0ed5dccd77a96acc6e1b404476 498 SUPERFAMILY SSF53720 2 482 1.3E-149 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RPE_RS11955 db4e6d0ed5dccd77a96acc6e1b404476 498 Gene3D G3DSA:3.40.605.10 3 260 9.9E-91 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RPE_RS11955 db4e6d0ed5dccd77a96acc6e1b404476 498 Pfam PF00171 Aldehyde dehydrogenase family 16 478 2.0E-140 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RPE_RS11955 db4e6d0ed5dccd77a96acc6e1b404476 498 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 5 482 9.6E-196 T 23-04-2016 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00410+1.2.1.18|KEGG: 00562+1.2.1.18|KEGG: 00640+1.2.1.18+1.2.1.27|MetaCyc: PWY-5642|MetaCyc: PWY-6373 RPE_RS11955 db4e6d0ed5dccd77a96acc6e1b404476 498 PANTHER PTHR11699:SF189 1 497 0.0 T 23-04-2016 RPE_RS11955 db4e6d0ed5dccd77a96acc6e1b404476 498 PANTHER PTHR11699 1 497 0.0 T 23-04-2016 RPE_RS20330 c9f7c8a6d32a6bc8cfa1389cd2ebf66a 240 PANTHER PTHR24567 12 223 5.7E-76 T 23-04-2016 RPE_RS20330 c9f7c8a6d32a6bc8cfa1389cd2ebf66a 240 SMART SM00100 14 135 4.2E-18 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RPE_RS20330 c9f7c8a6d32a6bc8cfa1389cd2ebf66a 240 Pfam PF00027 Cyclic nucleotide-binding domain 34 120 1.3E-17 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RPE_RS20330 c9f7c8a6d32a6bc8cfa1389cd2ebf66a 240 SUPERFAMILY SSF46785 150 226 1.5E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS20330 c9f7c8a6d32a6bc8cfa1389cd2ebf66a 240 Gene3D G3DSA:2.60.120.10 11 146 1.2E-32 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS20330 c9f7c8a6d32a6bc8cfa1389cd2ebf66a 240 Pfam PF13545 Crp-like helix-turn-helix domain 152 223 7.5E-19 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RPE_RS20330 c9f7c8a6d32a6bc8cfa1389cd2ebf66a 240 Gene3D G3DSA:1.10.10.10 149 228 2.0E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS20330 c9f7c8a6d32a6bc8cfa1389cd2ebf66a 240 SUPERFAMILY SSF51206 9 146 5.89E-32 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like RPE_RS20330 c9f7c8a6d32a6bc8cfa1389cd2ebf66a 240 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 193 208 2.1E-6 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RPE_RS20330 c9f7c8a6d32a6bc8cfa1389cd2ebf66a 240 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 177 193 2.1E-6 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RPE_RS20330 c9f7c8a6d32a6bc8cfa1389cd2ebf66a 240 SMART SM00419 171 219 4.1E-15 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RPE_RS20330 c9f7c8a6d32a6bc8cfa1389cd2ebf66a 240 PANTHER PTHR24567:SF32 12 223 5.7E-76 T 23-04-2016 RPE_RS16185 6e339373c3fa61808d99ff0428a0b9ca 172 PANTHER PTHR33164 2 168 9.6E-45 T 23-04-2016 RPE_RS16185 6e339373c3fa61808d99ff0428a0b9ca 172 PRINTS PR00598 Bacterial regulatory protein MarR family signature 76 92 4.0E-6 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RPE_RS16185 6e339373c3fa61808d99ff0428a0b9ca 172 PRINTS PR00598 Bacterial regulatory protein MarR family signature 93 108 4.0E-6 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RPE_RS16185 6e339373c3fa61808d99ff0428a0b9ca 172 PRINTS PR00598 Bacterial regulatory protein MarR family signature 112 128 4.0E-6 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RPE_RS16185 6e339373c3fa61808d99ff0428a0b9ca 172 Pfam PF01047 MarR family 58 116 8.8E-15 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RPE_RS16185 6e339373c3fa61808d99ff0428a0b9ca 172 PANTHER PTHR33164:SF3 2 168 9.6E-45 T 23-04-2016 RPE_RS16185 6e339373c3fa61808d99ff0428a0b9ca 172 Gene3D G3DSA:1.10.10.10 22 167 7.4E-36 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS16185 6e339373c3fa61808d99ff0428a0b9ca 172 ProSitePatterns PS01117 MarR-type HTH domain signature. 91 125 - T 23-04-2016 IPR023187 Transcriptional regulator MarR-type, conserved site RPE_RS16185 6e339373c3fa61808d99ff0428a0b9ca 172 SMART SM00347 51 152 3.3E-21 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RPE_RS16185 6e339373c3fa61808d99ff0428a0b9ca 172 SUPERFAMILY SSF46785 24 164 5.88E-29 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS15860 4a0c60e037717aed488c661edc4d9112 472 SUPERFAMILY SSF54637 2 138 5.69E-25 T 23-04-2016 IPR029069 HotDog domain RPE_RS15860 4a0c60e037717aed488c661edc4d9112 472 Pfam PF01515 Phosphate acetyl/butaryl transferase 232 448 3.3E-42 T 23-04-2016 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 RPE_RS15860 4a0c60e037717aed488c661edc4d9112 472 Gene3D G3DSA:3.10.129.10 6 134 1.2E-25 T 23-04-2016 IPR029069 HotDog domain RPE_RS15860 4a0c60e037717aed488c661edc4d9112 472 Gene3D G3DSA:3.40.50.10750 270 425 1.9E-45 T 23-04-2016 RPE_RS15860 4a0c60e037717aed488c661edc4d9112 472 PANTHER PTHR13078 1 173 2.9E-17 T 23-04-2016 RPE_RS15860 4a0c60e037717aed488c661edc4d9112 472 SUPERFAMILY SSF53659 164 451 7.81E-62 T 23-04-2016 RPE_RS15860 4a0c60e037717aed488c661edc4d9112 472 Pfam PF01575 MaoC like domain 18 106 5.1E-7 T 23-04-2016 IPR002539 MaoC-like domain RPE_RS08035 c4495464b3e83e1f2fd6879f356e8160 891 Gene3D G3DSA:3.30.930.10 4 242 1.2E-113 T 23-04-2016 RPE_RS08035 c4495464b3e83e1f2fd6879f356e8160 891 SMART SM00863 653 707 1.0E-17 T 23-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 RPE_RS08035 c4495464b3e83e1f2fd6879f356e8160 891 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 653 707 3.8E-16 T 23-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 RPE_RS08035 c4495464b3e83e1f2fd6879f356e8160 891 Pfam PF01411 tRNA synthetases class II (A) 6 556 1.9E-219 T 23-04-2016 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 RPE_RS08035 c4495464b3e83e1f2fd6879f356e8160 891 SUPERFAMILY SSF55681 4 245 2.73E-108 T 23-04-2016 RPE_RS08035 c4495464b3e83e1f2fd6879f356e8160 891 SUPERFAMILY SSF101353 246 461 1.7E-61 T 23-04-2016 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RPE_RS08035 c4495464b3e83e1f2fd6879f356e8160 891 PANTHER PTHR11777 1 891 0.0 T 23-04-2016 RPE_RS08035 c4495464b3e83e1f2fd6879f356e8160 891 PRINTS PR00980 Alanyl-tRNA synthetase signature 199 210 1.5E-32 T 23-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RPE_RS08035 c4495464b3e83e1f2fd6879f356e8160 891 PRINTS PR00980 Alanyl-tRNA synthetase signature 226 239 1.5E-32 T 23-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RPE_RS08035 c4495464b3e83e1f2fd6879f356e8160 891 PRINTS PR00980 Alanyl-tRNA synthetase signature 75 86 1.5E-32 T 23-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RPE_RS08035 c4495464b3e83e1f2fd6879f356e8160 891 PRINTS PR00980 Alanyl-tRNA synthetase signature 298 311 1.5E-32 T 23-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RPE_RS08035 c4495464b3e83e1f2fd6879f356e8160 891 PRINTS PR00980 Alanyl-tRNA synthetase signature 274 290 1.5E-32 T 23-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RPE_RS08035 c4495464b3e83e1f2fd6879f356e8160 891 Pfam PF02272 DHHA1 domain 816 885 1.5E-15 T 23-04-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7 RPE_RS08035 c4495464b3e83e1f2fd6879f356e8160 891 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 6 872 6.3E-293 T 23-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RPE_RS08035 c4495464b3e83e1f2fd6879f356e8160 891 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 891 200.237 T 23-04-2016 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 RPE_RS08035 c4495464b3e83e1f2fd6879f356e8160 891 PANTHER PTHR11777:SF9 1 891 0.0 T 23-04-2016 RPE_RS08035 c4495464b3e83e1f2fd6879f356e8160 891 SUPERFAMILY SSF50447 453 548 2.01E-18 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain RPE_RS08035 c4495464b3e83e1f2fd6879f356e8160 891 SUPERFAMILY SSF55186 552 715 1.96E-48 T 23-04-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 RPE_RS00585 cc29c70a804d941908883522bdffb9b8 95 Pfam PF04226 Transglycosylase associated protein 37 79 1.9E-12 T 23-04-2016 IPR007341 Transglycosylase-associated protein GO:0016021 RPE_RS00585 cc29c70a804d941908883522bdffb9b8 95 PANTHER PTHR33884 1 86 1.2E-26 T 23-04-2016 RPE_RS00585 cc29c70a804d941908883522bdffb9b8 95 PANTHER PTHR33884:SF1 1 86 1.2E-26 T 23-04-2016 RPE_RS05380 2818ac3ea39b559b3eb727fb34a0454e 190 Pfam PF05014 Nucleoside 2-deoxyribosyltransferase 3 141 1.2E-42 T 23-04-2016 IPR007710 Nucleoside 2-deoxyribosyltransferase GO:0009159|GO:0050144|GO:0070694 RPE_RS05380 2818ac3ea39b559b3eb727fb34a0454e 190 SUPERFAMILY SSF52309 1 155 2.59E-45 T 23-04-2016 RPE_RS05380 2818ac3ea39b559b3eb727fb34a0454e 190 Gene3D G3DSA:3.40.50.1810 1 163 6.9E-24 T 23-04-2016 IPR007710 Nucleoside 2-deoxyribosyltransferase GO:0009159|GO:0050144|GO:0070694 RPE_RS05380 2818ac3ea39b559b3eb727fb34a0454e 190 PANTHER PTHR15364 1 176 3.6E-55 T 23-04-2016 RPE_RS05380 2818ac3ea39b559b3eb727fb34a0454e 190 PANTHER PTHR15364:SF1 1 176 3.6E-55 T 23-04-2016 RPE_RS09690 b1901e88d48b0ba2b0f9b4e7306f5ab9 456 PRINTS PR00344 Bacterial sensor protein C-terminal signature 417 435 7.2E-7 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS09690 b1901e88d48b0ba2b0f9b4e7306f5ab9 456 PRINTS PR00344 Bacterial sensor protein C-terminal signature 386 400 7.2E-7 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS09690 b1901e88d48b0ba2b0f9b4e7306f5ab9 456 SUPERFAMILY SSF55874 311 454 1.96E-24 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS09690 b1901e88d48b0ba2b0f9b4e7306f5ab9 456 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 348 454 7.3E-13 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS09690 b1901e88d48b0ba2b0f9b4e7306f5ab9 456 SMART SM00387 346 456 4.5E-16 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS09690 b1901e88d48b0ba2b0f9b4e7306f5ab9 456 SUPERFAMILY SSF47384 227 298 5.49E-6 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS09690 b1901e88d48b0ba2b0f9b4e7306f5ab9 456 PANTHER PTHR24423:SF496 186 454 5.0E-45 T 23-04-2016 RPE_RS09690 b1901e88d48b0ba2b0f9b4e7306f5ab9 456 PANTHER PTHR24423:SF496 1 7 5.0E-45 T 23-04-2016 RPE_RS09690 b1901e88d48b0ba2b0f9b4e7306f5ab9 456 PANTHER PTHR24423 186 454 5.0E-45 T 23-04-2016 RPE_RS09690 b1901e88d48b0ba2b0f9b4e7306f5ab9 456 PANTHER PTHR24423 1 7 5.0E-45 T 23-04-2016 RPE_RS09690 b1901e88d48b0ba2b0f9b4e7306f5ab9 456 Gene3D G3DSA:3.30.565.10 312 454 8.8E-26 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS22950 a623ab14d6cb4132fb7e035db70b46d9 213 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 181 194 - T 23-04-2016 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RPE_RS22950 a623ab14d6cb4132fb7e035db70b46d9 213 PANTHER PTHR10851:SF0 22 213 1.1E-88 T 23-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RPE_RS22950 a623ab14d6cb4132fb7e035db70b46d9 213 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 20 213 1.6E-69 T 23-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RPE_RS22950 a623ab14d6cb4132fb7e035db70b46d9 213 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 34 118 1.6E-25 T 23-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RPE_RS22950 a623ab14d6cb4132fb7e035db70b46d9 213 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 7 213 38.325 T 23-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RPE_RS22950 a623ab14d6cb4132fb7e035db70b46d9 213 SUPERFAMILY SSF50475 21 213 9.17E-65 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RPE_RS22950 a623ab14d6cb4132fb7e035db70b46d9 213 Gene3D G3DSA:2.30.110.10 20 213 9.0E-78 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RPE_RS22950 a623ab14d6cb4132fb7e035db70b46d9 213 PANTHER PTHR10851 22 213 1.1E-88 T 23-04-2016 RPE_RS22950 a623ab14d6cb4132fb7e035db70b46d9 213 PIRSF PIRSF000190 2 213 1.0E-72 T 23-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RPE_RS22950 a623ab14d6cb4132fb7e035db70b46d9 213 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 171 213 3.7E-16 T 23-04-2016 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RPE_RS21140 e40c071550944c941a4e9ce85bbc8fbf 426 Pfam PF13458 Periplasmic binding protein 26 388 1.3E-60 T 23-04-2016 IPR028081 Leucine-binding protein domain RPE_RS21140 e40c071550944c941a4e9ce85bbc8fbf 426 SUPERFAMILY SSF53822 27 389 2.25E-51 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RPE_RS21140 e40c071550944c941a4e9ce85bbc8fbf 426 Gene3D G3DSA:3.40.50.2300 21 155 6.2E-20 T 23-04-2016 RPE_RS21140 e40c071550944c941a4e9ce85bbc8fbf 426 Gene3D G3DSA:3.40.50.2300 300 378 6.2E-20 T 23-04-2016 RPE_RS21140 e40c071550944c941a4e9ce85bbc8fbf 426 PANTHER PTHR30483:SF5 1 389 7.3E-216 T 23-04-2016 RPE_RS21140 e40c071550944c941a4e9ce85bbc8fbf 426 PANTHER PTHR30483 1 389 7.3E-216 T 23-04-2016 RPE_RS21140 e40c071550944c941a4e9ce85bbc8fbf 426 Gene3D G3DSA:3.40.50.2300 156 299 9.7E-19 T 23-04-2016 RPE_RS14585 d8c9df49adcadf1d3134a72a540faeeb 287 Pfam PF00494 Squalene/phytoene synthase 18 274 1.9E-51 T 23-04-2016 IPR002060 Squalene/phytoene synthase GO:0009058|GO:0016740 RPE_RS14585 d8c9df49adcadf1d3134a72a540faeeb 287 PANTHER PTHR21181:SF18 9 286 2.8E-110 T 23-04-2016 RPE_RS14585 d8c9df49adcadf1d3134a72a540faeeb 287 SUPERFAMILY SSF48576 10 284 6.62E-56 T 23-04-2016 IPR008949 Isoprenoid synthase domain RPE_RS14585 d8c9df49adcadf1d3134a72a540faeeb 287 PANTHER PTHR21181 9 286 2.8E-110 T 23-04-2016 RPE_RS14585 d8c9df49adcadf1d3134a72a540faeeb 287 Gene3D G3DSA:1.10.600.10 7 281 7.3E-23 T 23-04-2016 IPR008949 Isoprenoid synthase domain RPE_RS16430 26e648a5df3065f50e200c46616de72a 590 Gene3D G3DSA:3.30.1360.30 283 415 2.1E-45 T 23-04-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 RPE_RS16430 26e648a5df3065f50e200c46616de72a 590 PANTHER PTHR22594:SF5 2 303 3.6E-200 T 23-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 RPE_RS16430 26e648a5df3065f50e200c46616de72a 590 PANTHER PTHR22594:SF5 371 573 3.6E-200 T 23-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 RPE_RS16430 26e648a5df3065f50e200c46616de72a 590 SUPERFAMILY SSF55681 426 585 6.13E-96 T 23-04-2016 RPE_RS16430 26e648a5df3065f50e200c46616de72a 590 SUPERFAMILY SSF55681 114 298 6.13E-96 T 23-04-2016 RPE_RS16430 26e648a5df3065f50e200c46616de72a 590 Pfam PF00152 tRNA synthetases class II (D, K and N) 122 559 2.7E-92 T 23-04-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS16430 26e648a5df3065f50e200c46616de72a 590 Gene3D G3DSA:2.40.50.140 4 107 8.4E-38 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS16430 26e648a5df3065f50e200c46616de72a 590 Gene3D G3DSA:3.30.930.10 136 282 4.6E-98 T 23-04-2016 RPE_RS16430 26e648a5df3065f50e200c46616de72a 590 Gene3D G3DSA:3.30.930.10 416 586 4.6E-98 T 23-04-2016 RPE_RS16430 26e648a5df3065f50e200c46616de72a 590 PRINTS PR01042 Aspartyl-tRNA synthetase signature 520 534 7.93E-21 T 23-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS16430 26e648a5df3065f50e200c46616de72a 590 PRINTS PR01042 Aspartyl-tRNA synthetase signature 211 224 7.93E-21 T 23-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS16430 26e648a5df3065f50e200c46616de72a 590 PRINTS PR01042 Aspartyl-tRNA synthetase signature 476 492 7.93E-21 T 23-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS16430 26e648a5df3065f50e200c46616de72a 590 PRINTS PR01042 Aspartyl-tRNA synthetase signature 194 206 7.93E-21 T 23-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS16430 26e648a5df3065f50e200c46616de72a 590 Hamap MF_00044 Aspartate--tRNA(Asp) ligase [aspS]. 4 565 32.559 T 23-04-2016 RPE_RS16430 26e648a5df3065f50e200c46616de72a 590 Pfam PF01336 OB-fold nucleic acid binding domain 21 104 2.3E-17 T 23-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 RPE_RS16430 26e648a5df3065f50e200c46616de72a 590 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 5 584 2.7E-177 T 23-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 RPE_RS16430 26e648a5df3065f50e200c46616de72a 590 SUPERFAMILY SSF55261 295 421 2.45E-32 T 23-04-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 RPE_RS16430 26e648a5df3065f50e200c46616de72a 590 PANTHER PTHR22594 2 303 3.6E-200 T 23-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS16430 26e648a5df3065f50e200c46616de72a 590 PANTHER PTHR22594 371 573 3.6E-200 T 23-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS16430 26e648a5df3065f50e200c46616de72a 590 SUPERFAMILY SSF50249 4 107 4.76E-32 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS00910 60febb9539e3ca12a4e20ef542cb9e0d 535 TIGRFAM TIGR00831 a_cpa1: Na+/H+ antiporter 8 526 3.5E-106 T 23-04-2016 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria GO:0006812|GO:0015299|GO:0016021 RPE_RS00910 60febb9539e3ca12a4e20ef542cb9e0d 535 Pfam PF00999 Sodium/hydrogen exchanger family 7 405 1.3E-53 T 23-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RPE_RS00910 60febb9539e3ca12a4e20ef542cb9e0d 535 PANTHER PTHR10110 5 530 4.2E-98 T 23-04-2016 IPR018422 Cation/H+ exchanger, CPA1 family GO:0006812|GO:0015299|GO:0016021 Reactome: REACT_15518 RPE_RS00910 60febb9539e3ca12a4e20ef542cb9e0d 535 PANTHER PTHR10110:SF86 5 530 4.2E-98 T 23-04-2016 RPE_RS19430 764aff7036947f513d95a742552d2947 526 Pfam PF02954 Bacterial regulatory protein, Fis family 471 510 2.8E-11 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RPE_RS19430 764aff7036947f513d95a742552d2947 526 SMART SM00382 227 370 5.1E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS19430 764aff7036947f513d95a742552d2947 526 SUPERFAMILY SSF52540 206 450 1.82E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS19430 764aff7036947f513d95a742552d2947 526 PANTHER PTHR32071 154 523 3.9E-159 T 23-04-2016 RPE_RS19430 764aff7036947f513d95a742552d2947 526 Pfam PF01590 GAF domain 34 172 2.9E-10 T 23-04-2016 IPR003018 GAF domain GO:0005515 RPE_RS19430 764aff7036947f513d95a742552d2947 526 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 293 308 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RPE_RS19430 764aff7036947f513d95a742552d2947 526 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 493 513 7.8E-9 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RPE_RS19430 764aff7036947f513d95a742552d2947 526 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 476 493 7.8E-9 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RPE_RS19430 764aff7036947f513d95a742552d2947 526 Gene3D G3DSA:1.10.8.60 380 456 3.7E-27 T 23-04-2016 RPE_RS19430 764aff7036947f513d95a742552d2947 526 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 231 244 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RPE_RS19430 764aff7036947f513d95a742552d2947 526 SUPERFAMILY SSF55781 15 179 1.48E-20 T 23-04-2016 IPR029016 GAF domain-like RPE_RS19430 764aff7036947f513d95a742552d2947 526 Gene3D G3DSA:3.30.450.40 15 176 1.4E-25 T 23-04-2016 IPR029016 GAF domain-like RPE_RS19430 764aff7036947f513d95a742552d2947 526 SMART SM00065 34 183 5.6E-25 T 23-04-2016 IPR003018 GAF domain GO:0005515 RPE_RS19430 764aff7036947f513d95a742552d2947 526 Pfam PF00158 Sigma-54 interaction domain 206 373 1.3E-69 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RPE_RS19430 764aff7036947f513d95a742552d2947 526 Gene3D G3DSA:3.40.50.300 204 379 2.5E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS19430 764aff7036947f513d95a742552d2947 526 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 420 429 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site RPE_RS19430 764aff7036947f513d95a742552d2947 526 SUPERFAMILY SSF46689 420 512 5.38E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS19430 764aff7036947f513d95a742552d2947 526 Gene3D G3DSA:1.10.10.60 457 512 1.1E-9 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS02445 ec8d85841ebd098083075f709a498354 264 SUPERFAMILY SSF48150 60 260 4.87E-70 T 23-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RPE_RS02445 ec8d85841ebd098083075f709a498354 264 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 240 256 - T 23-04-2016 IPR004035 Endonuclease III, iron-sulphur binding site RPE_RS02445 ec8d85841ebd098083075f709a498354 264 SMART SM00525 239 259 8.3E-4 T 23-04-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: REACT_216 RPE_RS02445 ec8d85841ebd098083075f709a498354 264 Pfam PF00633 Helix-hairpin-helix motif 153 180 8.0E-6 T 23-04-2016 IPR000445 Helix-hairpin-helix motif GO:0003677 RPE_RS02445 ec8d85841ebd098083075f709a498354 264 TIGRFAM TIGR01083 nth: endonuclease III 58 247 1.7E-80 T 23-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 RPE_RS02445 ec8d85841ebd098083075f709a498354 264 PANTHER PTHR10359:SF18 58 262 5.2E-90 T 23-04-2016 RPE_RS02445 ec8d85841ebd098083075f709a498354 264 Hamap MF_00942 Endonuclease III [nth]. 27 262 37.636 T 23-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 RPE_RS02445 ec8d85841ebd098083075f709a498354 264 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 240 256 8.0E-5 T 23-04-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: REACT_216 RPE_RS02445 ec8d85841ebd098083075f709a498354 264 Gene3D G3DSA:1.10.340.30 76 175 5.9E-34 T 23-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RPE_RS02445 ec8d85841ebd098083075f709a498354 264 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 87 220 5.0E-20 T 23-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 RPE_RS02445 ec8d85841ebd098083075f709a498354 264 PANTHER PTHR10359 58 262 5.2E-90 T 23-04-2016 RPE_RS02445 ec8d85841ebd098083075f709a498354 264 Gene3D G3DSA:1.10.1670.10 176 261 3.1E-34 T 23-04-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal RPE_RS02445 ec8d85841ebd098083075f709a498354 264 SMART SM00478 91 238 1.3E-56 T 23-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 RPE_RS02760 72ae342061c1954aa015973398ad840a 349 Hamap MF_01454 GTPase Obg [obg]. 2 327 46.389 T 23-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 RPE_RS02760 72ae342061c1954aa015973398ad840a 349 Gene3D G3DSA:2.70.210.12 2 155 2.3E-59 T 23-04-2016 IPR006169 GTP1/OBG domain GO:0005525 RPE_RS02760 72ae342061c1954aa015973398ad840a 349 SUPERFAMILY SSF52540 150 332 4.3E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02760 72ae342061c1954aa015973398ad840a 349 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 227 245 1.5E-34 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RPE_RS02760 72ae342061c1954aa015973398ad840a 349 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 1.5E-34 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RPE_RS02760 72ae342061c1954aa015973398ad840a 349 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 210 225 1.5E-34 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RPE_RS02760 72ae342061c1954aa015973398ad840a 349 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 1.5E-34 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RPE_RS02760 72ae342061c1954aa015973398ad840a 349 PANTHER PTHR11702:SF3 1 342 7.3E-153 T 23-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 RPE_RS02760 72ae342061c1954aa015973398ad840a 349 PIRSF PIRSF002401 1 343 1.1E-132 T 23-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 RPE_RS02760 72ae342061c1954aa015973398ad840a 349 PANTHER PTHR11702 1 342 7.3E-153 T 23-04-2016 RPE_RS02760 72ae342061c1954aa015973398ad840a 349 Pfam PF01926 50S ribosome-binding GTPase 162 280 1.2E-24 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RPE_RS02760 72ae342061c1954aa015973398ad840a 349 Pfam PF01018 GTP1/OBG 3 158 1.7E-61 T 23-04-2016 IPR006169 GTP1/OBG domain GO:0005525 RPE_RS02760 72ae342061c1954aa015973398ad840a 349 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 325 3.5E-139 T 23-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 RPE_RS02760 72ae342061c1954aa015973398ad840a 349 Gene3D G3DSA:3.40.50.300 156 333 8.3E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02760 72ae342061c1954aa015973398ad840a 349 SUPERFAMILY SSF82051 2 158 2.22E-56 T 23-04-2016 IPR006169 GTP1/OBG domain GO:0005525 RPE_RS02760 72ae342061c1954aa015973398ad840a 349 ProSitePatterns PS00905 GTP1/OBG family signature. 212 225 - T 23-04-2016 IPR006074 GTP1/OBG, conserved site GO:0005525 RPE_RS15920 a056da0d875b16798f3f3e28e97d624d 673 PANTHER PTHR21075 3 662 7.7E-226 T 23-04-2016 RPE_RS15920 a056da0d875b16798f3f3e28e97d624d 673 Pfam PF03477 ATP cone domain 12 100 9.0E-20 T 23-04-2016 IPR005144 ATP-cone domain RPE_RS15920 a056da0d875b16798f3f3e28e97d624d 673 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 130 660 1.3E-170 T 23-04-2016 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.17.4.2|KEGG: 00240+1.17.4.2|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 RPE_RS15920 a056da0d875b16798f3f3e28e97d624d 673 Gene3D G3DSA:3.20.70.20 135 662 4.5E-197 T 23-04-2016 RPE_RS15920 a056da0d875b16798f3f3e28e97d624d 673 SUPERFAMILY SSF51998 130 662 3.97E-156 T 23-04-2016 RPE_RS15920 a056da0d875b16798f3f3e28e97d624d 673 TIGRFAM TIGR02487 NrdD: anaerobic ribonucleoside-triphosphate reductase 129 662 2.0E-137 T 23-04-2016 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.17.4.2|KEGG: 00240+1.17.4.2|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 RPE_RS06080 37ee133b3591541fe7064d318725c8f5 99 SUPERFAMILY SSF52091 3 97 7.06E-20 T 23-04-2016 IPR002645 STAS domain RPE_RS06080 37ee133b3591541fe7064d318725c8f5 99 Gene3D G3DSA:3.30.750.24 2 98 3.1E-20 T 23-04-2016 IPR002645 STAS domain RPE_RS06080 37ee133b3591541fe7064d318725c8f5 99 Pfam PF13466 STAS domain 12 89 4.5E-15 T 23-04-2016 IPR002645 STAS domain RPE_RS00330 845d801e51dc36580db7974c1a525526 328 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 6 158 9.6E-44 T 23-04-2016 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RPE_RS00330 845d801e51dc36580db7974c1a525526 328 PIRSF PIRSF000114 1 328 1.5E-87 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RPE_RS00330 845d801e51dc36580db7974c1a525526 328 PANTHER PTHR11728 1 328 6.1E-102 T 23-04-2016 RPE_RS00330 845d801e51dc36580db7974c1a525526 328 Gene3D G3DSA:1.10.1040.10 179 326 9.9E-42 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RPE_RS00330 845d801e51dc36580db7974c1a525526 328 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 5 319 33.256 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RPE_RS00330 845d801e51dc36580db7974c1a525526 328 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 58 85 2.4E-31 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RPE_RS00330 845d801e51dc36580db7974c1a525526 328 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 9 26 2.4E-31 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RPE_RS00330 845d801e51dc36580db7974c1a525526 328 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 237 254 2.4E-31 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RPE_RS00330 845d801e51dc36580db7974c1a525526 328 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 197 221 2.4E-31 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RPE_RS00330 845d801e51dc36580db7974c1a525526 328 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 132 152 2.4E-31 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RPE_RS00330 845d801e51dc36580db7974c1a525526 328 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 172 196 2.4E-31 T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RPE_RS00330 845d801e51dc36580db7974c1a525526 328 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 179 317 8.1E-40 T 23-04-2016 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RPE_RS00330 845d801e51dc36580db7974c1a525526 328 SUPERFAMILY SSF48179 178 328 2.04E-43 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RPE_RS00330 845d801e51dc36580db7974c1a525526 328 SUPERFAMILY SSF51735 2 179 7.89E-47 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS00330 845d801e51dc36580db7974c1a525526 328 PANTHER PTHR11728:SF1 1 328 6.1E-102 T 23-04-2016 RPE_RS00330 845d801e51dc36580db7974c1a525526 328 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 187 208 - T 23-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RPE_RS00330 845d801e51dc36580db7974c1a525526 328 Gene3D G3DSA:3.40.50.720 7 178 9.5E-56 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS18345 88b25e2e50573d0459657807cbad996b 187 Pfam PF13628 Domain of unknown function (DUF4142) 37 173 5.8E-44 T 23-04-2016 IPR025419 Domain of unknown function DUF4142 RPE_RS18345 88b25e2e50573d0459657807cbad996b 187 Gene3D G3DSA:1.20.1260.10 105 162 1.9E-4 T 23-04-2016 IPR012347 Ferritin-related RPE_RS18345 88b25e2e50573d0459657807cbad996b 187 PANTHER PTHR38593 36 181 3.2E-16 T 23-04-2016 RPE_RS07955 77799d98bb88affd9efa3593e68b74cc 479 PRINTS PR00376 Interleukin-1B converting enzyme signature 138 156 7.4E-5 T 23-04-2016 IPR015917 Peptidase C14A, caspase catalytic domain GO:0006915|GO:0008234 RPE_RS07955 77799d98bb88affd9efa3593e68b74cc 479 PRINTS PR00376 Interleukin-1B converting enzyme signature 60 78 7.4E-5 T 23-04-2016 IPR015917 Peptidase C14A, caspase catalytic domain GO:0006915|GO:0008234 RPE_RS07955 77799d98bb88affd9efa3593e68b74cc 479 PRINTS PR00376 Interleukin-1B converting enzyme signature 243 252 7.4E-5 T 23-04-2016 IPR015917 Peptidase C14A, caspase catalytic domain GO:0006915|GO:0008234 RPE_RS07955 77799d98bb88affd9efa3593e68b74cc 479 PRINTS PR00376 Interleukin-1B converting enzyme signature 24 37 7.4E-5 T 23-04-2016 IPR015917 Peptidase C14A, caspase catalytic domain GO:0006915|GO:0008234 RPE_RS07955 77799d98bb88affd9efa3593e68b74cc 479 SUPERFAMILY SSF52129 19 253 2.39E-50 T 23-04-2016 IPR029030 Caspase-like domain RPE_RS07955 77799d98bb88affd9efa3593e68b74cc 479 Pfam PF00656 Caspase domain 26 249 1.0E-33 T 23-04-2016 RPE_RS07955 77799d98bb88affd9efa3593e68b74cc 479 Gene3D G3DSA:3.40.50.1460 25 252 3.3E-17 T 23-04-2016 IPR029030 Caspase-like domain RPE_RS07955 77799d98bb88affd9efa3593e68b74cc 479 PANTHER PTHR22576:SF30 1 383 2.3E-94 T 23-04-2016 RPE_RS07955 77799d98bb88affd9efa3593e68b74cc 479 PANTHER PTHR22576 1 383 2.3E-94 T 23-04-2016 RPE_RS03045 ae54f99053480430a12e243ceabc741d 175 Pfam PF12802 MarR family 45 106 2.3E-10 T 23-04-2016 RPE_RS03045 ae54f99053480430a12e243ceabc741d 175 ProSitePatterns PS01117 MarR-type HTH domain signature. 81 115 - T 23-04-2016 IPR023187 Transcriptional regulator MarR-type, conserved site RPE_RS03045 ae54f99053480430a12e243ceabc741d 175 SUPERFAMILY SSF46785 16 161 5.03E-27 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS03045 ae54f99053480430a12e243ceabc741d 175 SMART SM00347 39 143 1.9E-24 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RPE_RS03045 ae54f99053480430a12e243ceabc741d 175 PANTHER PTHR33164 16 167 1.5E-20 T 23-04-2016 RPE_RS03045 ae54f99053480430a12e243ceabc741d 175 Gene3D G3DSA:1.10.10.10 14 161 1.2E-32 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS17515 9fe17750b6a7e502d4137fa99c1a9ad0 483 Pfam PF01050 Mannose-6-phosphate isomerase 328 478 2.1E-61 T 23-04-2016 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882|UniPathway: UPA00126 RPE_RS17515 9fe17750b6a7e502d4137fa99c1a9ad0 483 SUPERFAMILY SSF53448 20 293 4.22E-61 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS17515 9fe17750b6a7e502d4137fa99c1a9ad0 483 PANTHER PTHR12526:SF387 169 302 4.2E-84 T 23-04-2016 RPE_RS17515 9fe17750b6a7e502d4137fa99c1a9ad0 483 PANTHER PTHR12526:SF387 365 482 4.2E-84 T 23-04-2016 RPE_RS17515 9fe17750b6a7e502d4137fa99c1a9ad0 483 Pfam PF00483 Nucleotidyl transferase 22 298 5.8E-53 T 23-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 RPE_RS17515 9fe17750b6a7e502d4137fa99c1a9ad0 483 Gene3D G3DSA:3.90.550.10 19 284 2.2E-74 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS17515 9fe17750b6a7e502d4137fa99c1a9ad0 483 PANTHER PTHR12526 169 302 4.2E-84 T 23-04-2016 RPE_RS17515 9fe17750b6a7e502d4137fa99c1a9ad0 483 PANTHER PTHR12526 365 482 4.2E-84 T 23-04-2016 RPE_RS17515 9fe17750b6a7e502d4137fa99c1a9ad0 483 SUPERFAMILY SSF51182 204 482 5.44E-65 T 23-04-2016 IPR011051 RmlC-like cupin domain RPE_RS17515 9fe17750b6a7e502d4137fa99c1a9ad0 483 TIGRFAM TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 20 481 8.8E-166 T 23-04-2016 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GO:0000271|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882|UniPathway: UPA00126 RPE_RS17515 9fe17750b6a7e502d4137fa99c1a9ad0 483 Gene3D G3DSA:2.60.120.10 370 482 1.4E-37 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS02955 4f7dc1c6f3648454060da3a413ac789c 521 Gene3D G3DSA:2.30.38.10 336 410 9.2E-18 T 23-04-2016 RPE_RS02955 4f7dc1c6f3648454060da3a413ac789c 521 SUPERFAMILY SSF56801 7 517 1.14E-140 T 23-04-2016 RPE_RS02955 4f7dc1c6f3648454060da3a413ac789c 521 Gene3D G3DSA:3.30.300.30 411 516 3.1E-25 T 23-04-2016 RPE_RS02955 4f7dc1c6f3648454060da3a413ac789c 521 TIGRFAM TIGR02262 benz_CoA_lig: benzoate-CoA ligase family 4 513 1.1E-254 T 23-04-2016 IPR011957 Benzoate-CoA ligase family GO:0005524|GO:0016405 RPE_RS02955 4f7dc1c6f3648454060da3a413ac789c 521 PANTHER PTHR24095 7 518 1.0E-149 T 23-04-2016 RPE_RS02955 4f7dc1c6f3648454060da3a413ac789c 521 Gene3D G3DSA:3.40.50.980 175 330 6.0E-36 T 23-04-2016 RPE_RS02955 4f7dc1c6f3648454060da3a413ac789c 521 Pfam PF00501 AMP-binding enzyme 17 417 8.7E-94 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS02955 4f7dc1c6f3648454060da3a413ac789c 521 Pfam PF13193 AMP-binding enzyme C-terminal domain 425 504 3.8E-19 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RPE_RS02955 4f7dc1c6f3648454060da3a413ac789c 521 Gene3D G3DSA:3.40.50.980 13 174 1.9E-38 T 23-04-2016 RPE_RS10990 8398b661584b31c4d4ddca94ba1cad50 114 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 7 40 1.0E-6 T 23-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 RPE_RS10990 8398b661584b31c4d4ddca94ba1cad50 114 PANTHER PTHR40516 2 83 9.5E-16 T 23-04-2016 RPE_RS10990 8398b661584b31c4d4ddca94ba1cad50 114 SMART SM00966 6 51 5.5E-8 T 23-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 RPE_RS10990 8398b661584b31c4d4ddca94ba1cad50 114 SUPERFAMILY SSF89447 1 74 5.41E-17 T 23-04-2016 RPE_RS10990 8398b661584b31c4d4ddca94ba1cad50 114 Gene3D G3DSA:2.10.260.10 1 80 2.0E-24 T 23-04-2016 RPE_RS00070 8d0387e37e185e299e058fd8c840d2b3 293 Gene3D G3DSA:1.10.760.10 210 292 6.4E-29 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS00070 8d0387e37e185e299e058fd8c840d2b3 293 PIRSF PIRSF000006 2 293 7.4E-111 T 23-04-2016 IPR004678 Cytochrome c oxidase cbb3-type, subunit III UniPathway: UPA00705 RPE_RS00070 8d0387e37e185e299e058fd8c840d2b3 293 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 115 197 3.1E-10 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS00070 8d0387e37e185e299e058fd8c840d2b3 293 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 211 286 3.3E-14 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS00070 8d0387e37e185e299e058fd8c840d2b3 293 SUPERFAMILY SSF46626 34 68 4.36E-28 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS00070 8d0387e37e185e299e058fd8c840d2b3 293 SUPERFAMILY SSF46626 104 206 4.36E-28 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS00070 8d0387e37e185e299e058fd8c840d2b3 293 Gene3D G3DSA:1.10.760.10 104 203 7.8E-26 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS00070 8d0387e37e185e299e058fd8c840d2b3 293 Gene3D G3DSA:1.10.760.10 39 61 7.8E-26 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS00070 8d0387e37e185e299e058fd8c840d2b3 293 PANTHER PTHR33751 4 58 5.7E-93 T 23-04-2016 RPE_RS00070 8d0387e37e185e299e058fd8c840d2b3 293 PANTHER PTHR33751 79 293 5.7E-93 T 23-04-2016 RPE_RS00070 8d0387e37e185e299e058fd8c840d2b3 293 PANTHER PTHR33751:SF1 4 58 5.7E-93 T 23-04-2016 RPE_RS00070 8d0387e37e185e299e058fd8c840d2b3 293 PANTHER PTHR33751:SF1 79 293 5.7E-93 T 23-04-2016 RPE_RS00070 8d0387e37e185e299e058fd8c840d2b3 293 TIGRFAM TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III 10 292 3.8E-109 T 23-04-2016 IPR004678 Cytochrome c oxidase cbb3-type, subunit III UniPathway: UPA00705 RPE_RS00070 8d0387e37e185e299e058fd8c840d2b3 293 SUPERFAMILY SSF46626 210 291 2.29E-25 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS00070 8d0387e37e185e299e058fd8c840d2b3 293 Pfam PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP 16 60 7.0E-25 T 23-04-2016 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal UniPathway: UPA00705 RPE_RS00070 8d0387e37e185e299e058fd8c840d2b3 293 PRINTS PR00605 Class IC cytochrome C signature 264 286 1.4E-6 T 23-04-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 RPE_RS00070 8d0387e37e185e299e058fd8c840d2b3 293 PRINTS PR00605 Class IC cytochrome C signature 123 134 1.4E-6 T 23-04-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 RPE_RS01590 da691e8e5ea980dd449a2dd8159f3465 207 Pfam PF04279 Intracellular septation protein A 18 189 3.5E-56 T 23-04-2016 IPR006008 Intracellular septation protein A GO:0016021 RPE_RS01590 da691e8e5ea980dd449a2dd8159f3465 207 PANTHER PTHR36917:SF1 14 201 1.0E-61 T 23-04-2016 RPE_RS01590 da691e8e5ea980dd449a2dd8159f3465 207 TIGRFAM TIGR00997 ispZ: intracellular septation protein A 18 191 7.0E-59 T 23-04-2016 IPR006008 Intracellular septation protein A GO:0016021 RPE_RS01590 da691e8e5ea980dd449a2dd8159f3465 207 PANTHER PTHR36917 14 201 1.0E-61 T 23-04-2016 RPE_RS01590 da691e8e5ea980dd449a2dd8159f3465 207 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 17 191 17.978 T 23-04-2016 IPR006008 Intracellular septation protein A GO:0016021 RPE_RS02435 769b0ceac13b1a8173cd67cce52cfeb2 297 Gene3D G3DSA:3.30.160.70 117 201 6.7E-27 T 23-04-2016 RPE_RS02435 769b0ceac13b1a8173cd67cce52cfeb2 297 PANTHER PTHR10815:SF5 99 291 2.4E-56 T 23-04-2016 RPE_RS02435 769b0ceac13b1a8173cd67cce52cfeb2 297 SMART SM00342 41 123 7.6E-11 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RPE_RS02435 769b0ceac13b1a8173cd67cce52cfeb2 297 SUPERFAMILY SSF53155 129 201 1.96E-18 T 23-04-2016 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 RPE_RS02435 769b0ceac13b1a8173cd67cce52cfeb2 297 Pfam PF12833 Helix-turn-helix domain 47 123 3.0E-14 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RPE_RS02435 769b0ceac13b1a8173cd67cce52cfeb2 297 Gene3D G3DSA:1.10.10.10 211 292 3.0E-28 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS02435 769b0ceac13b1a8173cd67cce52cfeb2 297 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 212 290 7.1E-29 T 23-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 RPE_RS02435 769b0ceac13b1a8173cd67cce52cfeb2 297 SUPERFAMILY SSF46689 25 75 6.27E-5 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS02435 769b0ceac13b1a8173cd67cce52cfeb2 297 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 214 291 2.4E-26 T 23-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 RPE_RS02435 769b0ceac13b1a8173cd67cce52cfeb2 297 SUPERFAMILY SSF46767 211 291 2.09E-27 T 23-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 RPE_RS02435 769b0ceac13b1a8173cd67cce52cfeb2 297 Gene3D G3DSA:1.10.10.60 23 80 1.1E-12 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS02435 769b0ceac13b1a8173cd67cce52cfeb2 297 PANTHER PTHR10815 99 291 2.4E-56 T 23-04-2016 RPE_RS13810 4bfed7af8f3ef76336d79e6198d5e621 952 Gene3D G3DSA:1.10.730.10 612 818 1.4E-70 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS13810 4bfed7af8f3ef76336d79e6198d5e621 952 Gene3D G3DSA:1.10.287.380 877 948 1.8E-6 T 23-04-2016 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 RPE_RS13810 4bfed7af8f3ef76336d79e6198d5e621 952 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 884 949 3.7E-17 T 23-04-2016 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 RPE_RS13810 4bfed7af8f3ef76336d79e6198d5e621 952 Hamap MF_02004 Valine--tRNA ligase [valS]. 2 949 15.878 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RPE_RS13810 4bfed7af8f3ef76336d79e6198d5e621 952 SUPERFAMILY SSF46589 884 948 2.41E-14 T 23-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 RPE_RS13810 4bfed7af8f3ef76336d79e6198d5e621 952 PANTHER PTHR11946 2 750 0.0 T 23-04-2016 RPE_RS13810 4bfed7af8f3ef76336d79e6198d5e621 952 PANTHER PTHR11946:SF5 880 942 0.0 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RPE_RS13810 4bfed7af8f3ef76336d79e6198d5e621 952 PANTHER PTHR11946:SF5 773 862 0.0 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RPE_RS13810 4bfed7af8f3ef76336d79e6198d5e621 952 PRINTS PR00986 Valyl-tRNA synthetase signature 371 384 4.8E-37 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RPE_RS13810 4bfed7af8f3ef76336d79e6198d5e621 952 PRINTS PR00986 Valyl-tRNA synthetase signature 240 257 4.8E-37 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RPE_RS13810 4bfed7af8f3ef76336d79e6198d5e621 952 PRINTS PR00986 Valyl-tRNA synthetase signature 492 513 4.8E-37 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RPE_RS13810 4bfed7af8f3ef76336d79e6198d5e621 952 PRINTS PR00986 Valyl-tRNA synthetase signature 38 49 4.8E-37 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RPE_RS13810 4bfed7af8f3ef76336d79e6198d5e621 952 PRINTS PR00986 Valyl-tRNA synthetase signature 523 541 4.8E-37 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RPE_RS13810 4bfed7af8f3ef76336d79e6198d5e621 952 Pfam PF08264 Anticodon-binding domain of tRNA 653 823 2.4E-36 T 23-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 RPE_RS13810 4bfed7af8f3ef76336d79e6198d5e621 952 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 45 56 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS13810 4bfed7af8f3ef76336d79e6198d5e621 952 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 15 610 4.9E-207 T 23-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS13810 4bfed7af8f3ef76336d79e6198d5e621 952 PANTHER PTHR11946:SF5 2 750 0.0 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RPE_RS13810 4bfed7af8f3ef76336d79e6198d5e621 952 Gene3D G3DSA:3.90.740.10 197 360 5.6E-45 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RPE_RS13810 4bfed7af8f3ef76336d79e6198d5e621 952 TIGRFAM TIGR00422 valS: valine--tRNA ligase 3 931 0.0 T 23-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RPE_RS13810 4bfed7af8f3ef76336d79e6198d5e621 952 SUPERFAMILY SSF50677 195 367 3.92E-57 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RPE_RS13810 4bfed7af8f3ef76336d79e6198d5e621 952 PANTHER PTHR11946 880 942 0.0 T 23-04-2016 RPE_RS13810 4bfed7af8f3ef76336d79e6198d5e621 952 SUPERFAMILY SSF52374 366 621 3.49E-140 T 23-04-2016 RPE_RS13810 4bfed7af8f3ef76336d79e6198d5e621 952 SUPERFAMILY SSF52374 3 195 3.49E-140 T 23-04-2016 RPE_RS13810 4bfed7af8f3ef76336d79e6198d5e621 952 PANTHER PTHR11946 773 862 0.0 T 23-04-2016 RPE_RS13810 4bfed7af8f3ef76336d79e6198d5e621 952 SUPERFAMILY SSF47323 624 749 7.48E-53 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS13810 4bfed7af8f3ef76336d79e6198d5e621 952 SUPERFAMILY SSF47323 786 898 7.48E-53 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS13810 4bfed7af8f3ef76336d79e6198d5e621 952 Gene3D G3DSA:3.40.50.620 366 609 1.1E-143 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS13810 4bfed7af8f3ef76336d79e6198d5e621 952 Gene3D G3DSA:3.40.50.620 4 196 1.1E-143 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS15640 9ecfeb7bcfdd4e1b453383e948190663 222 PANTHER PTHR23416:SF61 43 80 1.8E-63 T 23-04-2016 RPE_RS15640 9ecfeb7bcfdd4e1b453383e948190663 222 PANTHER PTHR23416:SF61 100 217 1.8E-63 T 23-04-2016 RPE_RS15640 9ecfeb7bcfdd4e1b453383e948190663 222 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 113 144 2.6E-4 T 23-04-2016 IPR001451 Hexapeptide repeat RPE_RS15640 9ecfeb7bcfdd4e1b453383e948190663 222 Gene3D G3DSA:2.160.10.10 22 200 1.0E-46 T 23-04-2016 RPE_RS15640 9ecfeb7bcfdd4e1b453383e948190663 222 PANTHER PTHR23416 43 80 1.8E-63 T 23-04-2016 RPE_RS15640 9ecfeb7bcfdd4e1b453383e948190663 222 PANTHER PTHR23416 100 217 1.8E-63 T 23-04-2016 RPE_RS15640 9ecfeb7bcfdd4e1b453383e948190663 222 TIGRFAM TIGR03308 phn_thr-fam: phosphonate metabolim protein, transferase hexapeptide repeat family 3 204 1.1E-97 T 23-04-2016 IPR017694 Phosphonate metabolim protein, transferase hexapeptide repeat family RPE_RS15640 9ecfeb7bcfdd4e1b453383e948190663 222 SUPERFAMILY SSF51161 52 204 5.82E-40 T 23-04-2016 IPR011004 Trimeric LpxA-like RPE_RS11140 a3a215b8daf408aad103281b304866a9 131 Gene3D G3DSA:3.30.420.180 3 126 1.5E-25 T 23-04-2016 IPR002750 CobE/GbiG C-terminal domain GO:0009236 RPE_RS11140 a3a215b8daf408aad103281b304866a9 131 SUPERFAMILY SSF159664 4 126 2.75E-25 T 23-04-2016 IPR002750 CobE/GbiG C-terminal domain GO:0009236 RPE_RS11140 a3a215b8daf408aad103281b304866a9 131 Pfam PF01890 Cobalamin synthesis G C-terminus 4 124 2.0E-19 T 23-04-2016 IPR002750 CobE/GbiG C-terminal domain GO:0009236 RPE_RS23755 1abf8da711458a97d58df729aa11c2ab 208 SUPERFAMILY SSF110111 70 189 1.96E-45 T 23-04-2016 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain RPE_RS23755 1abf8da711458a97d58df729aa11c2ab 208 Hamap MF_00155 Cytochrome c oxidase assembly protein CtaG [ctaG]. 1 193 40.602 T 23-04-2016 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 RPE_RS23755 1abf8da711458a97d58df729aa11c2ab 208 PANTHER PTHR21320:SF3 31 186 2.0E-50 T 23-04-2016 RPE_RS23755 1abf8da711458a97d58df729aa11c2ab 208 PANTHER PTHR21320 31 186 2.0E-50 T 23-04-2016 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 RPE_RS23755 1abf8da711458a97d58df729aa11c2ab 208 PIRSF PIRSF005413 6 204 3.3E-66 T 23-04-2016 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 RPE_RS23755 1abf8da711458a97d58df729aa11c2ab 208 Gene3D G3DSA:2.60.370.10 71 198 7.5E-49 T 23-04-2016 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain RPE_RS23755 1abf8da711458a97d58df729aa11c2ab 208 Pfam PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 42 186 7.0E-52 T 23-04-2016 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 RPE_RS07125 2e2f75aa241a9bea8bc6b22131eb0e3b 165 Pfam PF01252 Signal peptidase (SPase) II 12 156 2.5E-31 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RPE_RS07125 2e2f75aa241a9bea8bc6b22131eb0e3b 165 PANTHER PTHR33695 5 164 1.1E-41 T 23-04-2016 RPE_RS07125 2e2f75aa241a9bea8bc6b22131eb0e3b 165 TIGRFAM TIGR00077 lspA: signal peptidase II 10 158 5.3E-34 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RPE_RS07125 2e2f75aa241a9bea8bc6b22131eb0e3b 165 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 3 162 15.312 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RPE_RS07125 2e2f75aa241a9bea8bc6b22131eb0e3b 165 PANTHER PTHR33695:SF1 5 164 1.1E-41 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RPE_RS07125 2e2f75aa241a9bea8bc6b22131eb0e3b 165 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 137 153 9.4E-14 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RPE_RS07125 2e2f75aa241a9bea8bc6b22131eb0e3b 165 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 51 59 9.4E-14 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RPE_RS07125 2e2f75aa241a9bea8bc6b22131eb0e3b 165 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 97 112 9.4E-14 T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RPE_RS07125 2e2f75aa241a9bea8bc6b22131eb0e3b 165 ProSitePatterns PS00855 Signal peptidases II signature. 100 112 - T 23-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RPE_RS13345 b2bbb8b843720f1d77dc8458f4e6bfcb 156 Gene3D G3DSA:3.30.700.10 26 112 8.0E-10 T 23-04-2016 RPE_RS13345 b2bbb8b843720f1d77dc8458f4e6bfcb 156 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 24 44 - T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site RPE_RS13345 b2bbb8b843720f1d77dc8458f4e6bfcb 156 Pfam PF08334 Type II secretion system (T2SS), protein G 48 156 9.1E-38 T 23-04-2016 IPR013545 Type II secretion system protein G RPE_RS13345 b2bbb8b843720f1d77dc8458f4e6bfcb 156 SUPERFAMILY SSF54523 51 156 2.04E-31 T 23-04-2016 RPE_RS13345 b2bbb8b843720f1d77dc8458f4e6bfcb 156 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 24 46 4.9E-8 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site RPE_RS13345 b2bbb8b843720f1d77dc8458f4e6bfcb 156 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 25 156 5.7E-44 T 23-04-2016 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 RPE_RS13345 b2bbb8b843720f1d77dc8458f4e6bfcb 156 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 22 45 9.7E-9 T 23-04-2016 IPR012902 Prokaryotic N-terminal methylation site RPE_RS13345 b2bbb8b843720f1d77dc8458f4e6bfcb 156 PANTHER PTHR30093:SF9 1 156 7.7E-39 T 23-04-2016 RPE_RS13345 b2bbb8b843720f1d77dc8458f4e6bfcb 156 PANTHER PTHR30093 1 156 7.7E-39 T 23-04-2016 RPE_RS13345 b2bbb8b843720f1d77dc8458f4e6bfcb 156 PRINTS PR00813 Bacterial general secretion pathway protein G signature 25 50 1.6E-12 T 23-04-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 RPE_RS13345 b2bbb8b843720f1d77dc8458f4e6bfcb 156 PRINTS PR00813 Bacterial general secretion pathway protein G signature 61 79 1.6E-12 T 23-04-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 RPE_RS01455 4e67dfbaad81ba25739f8c067afb81f8 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 137 155 1.7E-37 T 23-04-2016 RPE_RS01455 4e67dfbaad81ba25739f8c067afb81f8 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 176 194 1.7E-37 T 23-04-2016 RPE_RS01455 4e67dfbaad81ba25739f8c067afb81f8 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 1.7E-37 T 23-04-2016 RPE_RS01455 4e67dfbaad81ba25739f8c067afb81f8 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 265 281 1.7E-37 T 23-04-2016 RPE_RS01455 4e67dfbaad81ba25739f8c067afb81f8 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 294 316 1.7E-37 T 23-04-2016 RPE_RS01455 4e67dfbaad81ba25739f8c067afb81f8 467 Gene3D G3DSA:3.50.50.60 141 335 2.1E-53 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS01455 4e67dfbaad81ba25739f8c067afb81f8 467 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 329 4.3E-70 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS01455 4e67dfbaad81ba25739f8c067afb81f8 467 SUPERFAMILY SSF55424 344 466 1.15E-43 T 23-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 RPE_RS01455 4e67dfbaad81ba25739f8c067afb81f8 467 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 348 457 7.8E-42 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RPE_RS01455 4e67dfbaad81ba25739f8c067afb81f8 467 Gene3D G3DSA:3.30.390.30 336 466 1.2E-51 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RPE_RS01455 4e67dfbaad81ba25739f8c067afb81f8 467 PANTHER PTHR22912:SF151 3 460 3.4E-248 T 23-04-2016 RPE_RS01455 4e67dfbaad81ba25739f8c067afb81f8 467 SUPERFAMILY SSF51905 3 323 5.42E-65 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS01455 4e67dfbaad81ba25739f8c067afb81f8 467 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 23-04-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 RPE_RS01455 4e67dfbaad81ba25739f8c067afb81f8 467 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 3 467 7.2E-170 T 23-04-2016 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084 RPE_RS01455 4e67dfbaad81ba25739f8c067afb81f8 467 PIRSF PIRSF000350 1 466 4.0E-95 T 23-04-2016 RPE_RS01455 4e67dfbaad81ba25739f8c067afb81f8 467 Gene3D G3DSA:3.50.50.60 3 140 2.6E-43 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS01455 4e67dfbaad81ba25739f8c067afb81f8 467 PANTHER PTHR22912 3 460 3.4E-248 T 23-04-2016 RPE_RS01455 4e67dfbaad81ba25739f8c067afb81f8 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 4.7E-79 T 23-04-2016 RPE_RS01455 4e67dfbaad81ba25739f8c067afb81f8 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 344 365 4.7E-79 T 23-04-2016 RPE_RS01455 4e67dfbaad81ba25739f8c067afb81f8 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 309 316 4.7E-79 T 23-04-2016 RPE_RS01455 4e67dfbaad81ba25739f8c067afb81f8 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 431 451 4.7E-79 T 23-04-2016 RPE_RS01455 4e67dfbaad81ba25739f8c067afb81f8 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 4.7E-79 T 23-04-2016 RPE_RS01455 4e67dfbaad81ba25739f8c067afb81f8 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 266 280 4.7E-79 T 23-04-2016 RPE_RS01455 4e67dfbaad81ba25739f8c067afb81f8 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 140 149 4.7E-79 T 23-04-2016 RPE_RS01455 4e67dfbaad81ba25739f8c067afb81f8 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 409 424 4.7E-79 T 23-04-2016 RPE_RS01455 4e67dfbaad81ba25739f8c067afb81f8 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 176 201 4.7E-79 T 23-04-2016 RPE_RS00600 3525447814aae1d2c168f64b071f5101 386 SUPERFAMILY SSF56645 10 250 1.13E-61 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RPE_RS00600 3525447814aae1d2c168f64b071f5101 386 Gene3D G3DSA:2.40.110.10 130 239 1.8E-30 T 23-04-2016 RPE_RS00600 3525447814aae1d2c168f64b071f5101 386 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 14 127 3.6E-20 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS00600 3525447814aae1d2c168f64b071f5101 386 PANTHER PTHR10909:SF242 1 381 7.0E-108 T 23-04-2016 RPE_RS00600 3525447814aae1d2c168f64b071f5101 386 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 131 226 1.1E-19 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RPE_RS00600 3525447814aae1d2c168f64b071f5101 386 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 133 145 - T 23-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RPE_RS00600 3525447814aae1d2c168f64b071f5101 386 Gene3D G3DSA:1.10.540.10 11 128 3.6E-20 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS00600 3525447814aae1d2c168f64b071f5101 386 Gene3D G3DSA:1.20.140.10 285 383 7.8E-5 T 23-04-2016 RPE_RS00600 3525447814aae1d2c168f64b071f5101 386 PANTHER PTHR10909 1 381 7.0E-108 T 23-04-2016 RPE_RS00600 3525447814aae1d2c168f64b071f5101 386 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 285 383 1.8E-4 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS05425 fdc36c036911b2e26d2ec680cef005f6 593 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 283 450 8.7E-24 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS05425 fdc36c036911b2e26d2ec680cef005f6 593 SUPERFAMILY SSF47203 281 459 3.38E-46 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS05425 fdc36c036911b2e26d2ec680cef005f6 593 SUPERFAMILY SSF56645 37 281 7.98E-57 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RPE_RS05425 fdc36c036911b2e26d2ec680cef005f6 593 PANTHER PTHR10909 3 478 1.7E-206 T 23-04-2016 RPE_RS05425 fdc36c036911b2e26d2ec680cef005f6 593 PANTHER PTHR10909:SF296 3 478 1.7E-206 T 23-04-2016 RPE_RS05425 fdc36c036911b2e26d2ec680cef005f6 593 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 161 269 3.1E-15 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RPE_RS05425 fdc36c036911b2e26d2ec680cef005f6 593 Gene3D G3DSA:1.10.540.10 35 157 1.3E-14 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS05425 fdc36c036911b2e26d2ec680cef005f6 593 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 468 585 4.5E-19 T 23-04-2016 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain RPE_RS05425 fdc36c036911b2e26d2ec680cef005f6 593 Gene3D G3DSA:2.40.110.10 160 271 1.1E-23 T 23-04-2016 RPE_RS05425 fdc36c036911b2e26d2ec680cef005f6 593 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 38 156 1.5E-10 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS05425 fdc36c036911b2e26d2ec680cef005f6 593 Gene3D G3DSA:1.20.140.10 272 455 1.0E-53 T 23-04-2016 RPE_RS03345 968ea6fc88527c3020ca779097648ede 958 Pfam PF00990 Diguanylate cyclase, GGDEF domain 526 682 7.4E-36 T 23-04-2016 IPR000160 GGDEF domain RPE_RS03345 968ea6fc88527c3020ca779097648ede 958 Gene3D G3DSA:3.20.20.450 700 951 8.7E-92 T 23-04-2016 IPR001633 EAL domain RPE_RS03345 968ea6fc88527c3020ca779097648ede 958 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 398 520 3.4E-12 T 23-04-2016 IPR000014 PAS domain RPE_RS03345 968ea6fc88527c3020ca779097648ede 958 Pfam PF00563 EAL domain 703 939 2.9E-66 T 23-04-2016 IPR001633 EAL domain RPE_RS03345 968ea6fc88527c3020ca779097648ede 958 PANTHER PTHR10799:SF710 559 797 7.5E-89 T 23-04-2016 RPE_RS03345 968ea6fc88527c3020ca779097648ede 958 Gene3D G3DSA:3.30.70.270 527 693 7.5E-46 T 23-04-2016 RPE_RS03345 968ea6fc88527c3020ca779097648ede 958 Gene3D G3DSA:3.30.450.20 400 512 1.6E-24 T 23-04-2016 RPE_RS03345 968ea6fc88527c3020ca779097648ede 958 Pfam PF08447 PAS fold 420 507 7.4E-17 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 RPE_RS03345 968ea6fc88527c3020ca779097648ede 958 SUPERFAMILY SSF141868 702 951 8.5E-81 T 23-04-2016 IPR001633 EAL domain RPE_RS03345 968ea6fc88527c3020ca779097648ede 958 SMART SM00052 697 944 4.2E-102 T 23-04-2016 IPR001633 EAL domain RPE_RS03345 968ea6fc88527c3020ca779097648ede 958 SUPERFAMILY SSF55785 406 516 3.44E-20 T 23-04-2016 IPR000014 PAS domain RPE_RS03345 968ea6fc88527c3020ca779097648ede 958 SMART SM00086 472 514 4.7E-8 T 23-04-2016 IPR001610 PAC motif RPE_RS03345 968ea6fc88527c3020ca779097648ede 958 PANTHER PTHR10799 559 797 7.5E-89 T 23-04-2016 RPE_RS03345 968ea6fc88527c3020ca779097648ede 958 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 524 686 4.2E-31 T 23-04-2016 IPR000160 GGDEF domain RPE_RS03345 968ea6fc88527c3020ca779097648ede 958 SMART SM00091 397 465 0.0026 T 23-04-2016 IPR000014 PAS domain RPE_RS03345 968ea6fc88527c3020ca779097648ede 958 SMART SM00267 515 687 6.8E-39 T 23-04-2016 IPR000160 GGDEF domain RPE_RS03345 968ea6fc88527c3020ca779097648ede 958 Pfam PF07696 7TMR-DISM extracellular 2 79 169 5.1E-6 T 23-04-2016 IPR011622 7TM-DISM receptor, extracellular domain, type 2 RPE_RS03345 968ea6fc88527c3020ca779097648ede 958 SUPERFAMILY SSF55073 530 688 7.85E-38 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS03700 35ff43e9317acc30527f68fd8368653b 197 SUPERFAMILY SSF52833 41 197 6.64E-51 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS03700 35ff43e9317acc30527f68fd8368653b 197 PANTHER PTHR12151 7 197 7.6E-64 T 23-04-2016 IPR003782 Copper chaperone SCO1/SenC RPE_RS03700 35ff43e9317acc30527f68fd8368653b 197 Gene3D G3DSA:3.40.30.10 23 196 1.8E-58 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS03700 35ff43e9317acc30527f68fd8368653b 197 Pfam PF02630 SCO1/SenC 39 181 1.9E-43 T 23-04-2016 IPR003782 Copper chaperone SCO1/SenC RPE_RS23205 545944f83f3f59c42f7da77c3ae0f56d 962 PANTHER PTHR21248 777 958 9.6E-16 T 23-04-2016 RPE_RS23205 545944f83f3f59c42f7da77c3ae0f56d 962 Gene3D G3DSA:2.40.10.10 223 338 9.7E-10 T 23-04-2016 RPE_RS23205 545944f83f3f59c42f7da77c3ae0f56d 962 Gene3D G3DSA:2.40.10.10 133 222 4.7E-6 T 23-04-2016 RPE_RS23205 545944f83f3f59c42f7da77c3ae0f56d 962 Pfam PF13091 PLD-like domain 780 916 1.4E-16 T 23-04-2016 IPR025202 Phospholipase D-like domain RPE_RS23205 545944f83f3f59c42f7da77c3ae0f56d 962 SUPERFAMILY SSF56024 764 926 4.97E-21 T 23-04-2016 RPE_RS23205 545944f83f3f59c42f7da77c3ae0f56d 962 Pfam PF13365 Trypsin-like peptidase domain 139 317 3.1E-11 T 23-04-2016 RPE_RS23205 545944f83f3f59c42f7da77c3ae0f56d 962 SUPERFAMILY SSF50494 117 335 2.95E-19 T 23-04-2016 IPR009003 Peptidase S1, PA clan RPE_RS23205 545944f83f3f59c42f7da77c3ae0f56d 962 SMART SM00155 637 664 290.0 T 23-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 RPE_RS23205 545944f83f3f59c42f7da77c3ae0f56d 962 SMART SM00155 861 888 0.0081 T 23-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 RPE_RS23205 545944f83f3f59c42f7da77c3ae0f56d 962 SUPERFAMILY SSF56024 537 714 8.63E-11 T 23-04-2016 RPE_RS23205 545944f83f3f59c42f7da77c3ae0f56d 962 Gene3D G3DSA:3.30.870.10 771 924 8.6E-20 T 23-04-2016 RPE_RS23205 545944f83f3f59c42f7da77c3ae0f56d 962 Gene3D G3DSA:3.30.870.10 537 714 4.4E-14 T 23-04-2016 RPE_RS20910 7959f9e75076183555b3af53997b9e59 240 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 10 21 8.9E-9 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RPE_RS20910 7959f9e75076183555b3af53997b9e59 240 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 154 174 8.9E-9 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RPE_RS20910 7959f9e75076183555b3af53997b9e59 240 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 136 152 8.9E-9 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RPE_RS20910 7959f9e75076183555b3af53997b9e59 240 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 105 118 8.9E-9 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RPE_RS20910 7959f9e75076183555b3af53997b9e59 240 PANTHER PTHR18901 8 223 1.5E-47 T 23-04-2016 RPE_RS20910 7959f9e75076183555b3af53997b9e59 240 SUPERFAMILY SSF56784 9 220 1.87E-47 T 23-04-2016 IPR023214 HAD-like domain RPE_RS20910 7959f9e75076183555b3af53997b9e59 240 Pfam PF13419 Haloacid dehalogenase-like hydrolase 13 187 4.8E-26 T 23-04-2016 IPR023214 HAD-like domain RPE_RS20910 7959f9e75076183555b3af53997b9e59 240 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 84 187 7.7E-15 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RPE_RS20910 7959f9e75076183555b3af53997b9e59 240 Gene3D G3DSA:3.40.50.1000 96 220 7.1E-41 T 23-04-2016 IPR023214 HAD-like domain RPE_RS20910 7959f9e75076183555b3af53997b9e59 240 Gene3D G3DSA:3.40.50.1000 6 24 7.1E-41 T 23-04-2016 IPR023214 HAD-like domain RPE_RS21245 f110e99a94649b08dc9e06f316c12a62 359 Gene3D G3DSA:3.40.640.10 2 223 5.8E-65 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS21245 f110e99a94649b08dc9e06f316c12a62 359 PANTHER PTHR30244 1 346 4.0E-87 T 23-04-2016 RPE_RS21245 f110e99a94649b08dc9e06f316c12a62 359 Gene3D G3DSA:3.90.1150.10 226 344 1.0E-25 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS21245 f110e99a94649b08dc9e06f316c12a62 359 PANTHER PTHR30244:SF3 1 346 4.0E-87 T 23-04-2016 RPE_RS21245 f110e99a94649b08dc9e06f316c12a62 359 PIRSF PIRSF000390 1 347 6.1E-83 T 23-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RPE_RS21245 f110e99a94649b08dc9e06f316c12a62 359 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 2 339 2.4E-88 T 23-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RPE_RS21245 f110e99a94649b08dc9e06f316c12a62 359 SUPERFAMILY SSF53383 1 343 1.33E-87 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS08300 fb554eec97aa61f5709b913fb12a6ecb 373 Pfam PF13458 Periplasmic binding protein 26 362 1.6E-55 T 23-04-2016 IPR028081 Leucine-binding protein domain RPE_RS08300 fb554eec97aa61f5709b913fb12a6ecb 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 48 64 6.9E-27 T 23-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RPE_RS08300 fb554eec97aa61f5709b913fb12a6ecb 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 67 85 6.9E-27 T 23-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RPE_RS08300 fb554eec97aa61f5709b913fb12a6ecb 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 328 343 6.9E-27 T 23-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RPE_RS08300 fb554eec97aa61f5709b913fb12a6ecb 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 254 272 6.9E-27 T 23-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RPE_RS08300 fb554eec97aa61f5709b913fb12a6ecb 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 26 42 6.9E-27 T 23-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RPE_RS08300 fb554eec97aa61f5709b913fb12a6ecb 373 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 277 290 6.9E-27 T 23-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RPE_RS08300 fb554eec97aa61f5709b913fb12a6ecb 373 SUPERFAMILY SSF53822 25 365 1.0E-90 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RPE_RS08300 fb554eec97aa61f5709b913fb12a6ecb 373 PANTHER PTHR30483 1 368 2.9E-122 T 23-04-2016 RPE_RS08300 fb554eec97aa61f5709b913fb12a6ecb 373 Gene3D G3DSA:3.40.50.2300 25 223 2.6E-60 T 23-04-2016 RPE_RS08300 fb554eec97aa61f5709b913fb12a6ecb 373 PANTHER PTHR30483:SF20 1 368 2.9E-122 T 23-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RPE_RS05040 b51aedc5216dacb6f3ba99c0a602ac36 260 SMART SM00382 28 228 5.8E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS05040 b51aedc5216dacb6f3ba99c0a602ac36 260 SUPERFAMILY SSF52540 3 250 1.23E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS05040 b51aedc5216dacb6f3ba99c0a602ac36 260 PANTHER PTHR24220:SF358 126 251 6.5E-107 T 23-04-2016 RPE_RS05040 b51aedc5216dacb6f3ba99c0a602ac36 260 PANTHER PTHR24220:SF358 5 110 6.5E-107 T 23-04-2016 RPE_RS05040 b51aedc5216dacb6f3ba99c0a602ac36 260 PANTHER PTHR24220 126 251 6.5E-107 T 23-04-2016 RPE_RS05040 b51aedc5216dacb6f3ba99c0a602ac36 260 PANTHER PTHR24220 5 110 6.5E-107 T 23-04-2016 RPE_RS05040 b51aedc5216dacb6f3ba99c0a602ac36 260 Pfam PF00005 ABC transporter 20 179 6.1E-31 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS05040 b51aedc5216dacb6f3ba99c0a602ac36 260 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 230 250 8.0E-8 T 23-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RPE_RS05040 b51aedc5216dacb6f3ba99c0a602ac36 260 Gene3D G3DSA:3.40.50.300 2 248 2.2E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS08560 562a556334bf75eb71cdcf2c580c08ff 502 PANTHER PTHR18919:SF94 158 397 1.3E-137 T 23-04-2016 RPE_RS08560 562a556334bf75eb71cdcf2c580c08ff 502 PANTHER PTHR18919:SF94 4 136 1.3E-137 T 23-04-2016 RPE_RS08560 562a556334bf75eb71cdcf2c580c08ff 502 SUPERFAMILY SSF53901 217 383 3.81E-10 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS08560 562a556334bf75eb71cdcf2c580c08ff 502 SUPERFAMILY SSF53901 30 127 3.81E-10 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS08560 562a556334bf75eb71cdcf2c580c08ff 502 Gene3D G3DSA:3.40.47.10 30 132 3.1E-4 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS08560 562a556334bf75eb71cdcf2c580c08ff 502 PANTHER PTHR18919 158 397 1.3E-137 T 23-04-2016 RPE_RS08560 562a556334bf75eb71cdcf2c580c08ff 502 PANTHER PTHR18919 4 136 1.3E-137 T 23-04-2016 RPE_RS11940 d8a4d10ad3d1748cbc4ba14edcd8ebaf 329 Pfam PF01614 Bacterial transcriptional regulator 145 265 6.4E-7 T 23-04-2016 IPR014757 Transcription regulator IclR, C-terminal RPE_RS11940 d8a4d10ad3d1748cbc4ba14edcd8ebaf 329 SUPERFAMILY SSF55781 97 267 4.05E-28 T 23-04-2016 IPR029016 GAF domain-like RPE_RS11940 d8a4d10ad3d1748cbc4ba14edcd8ebaf 329 SMART SM00346 23 113 4.9E-14 T 23-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RPE_RS11940 d8a4d10ad3d1748cbc4ba14edcd8ebaf 329 SUPERFAMILY SSF46785 23 93 2.62E-12 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS11940 d8a4d10ad3d1748cbc4ba14edcd8ebaf 329 PANTHER PTHR30136 20 279 8.5E-110 T 23-04-2016 RPE_RS11940 d8a4d10ad3d1748cbc4ba14edcd8ebaf 329 Gene3D G3DSA:1.10.10.10 23 85 5.7E-19 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS11940 d8a4d10ad3d1748cbc4ba14edcd8ebaf 329 PANTHER PTHR30136:SF4 20 279 8.5E-110 T 23-04-2016 RPE_RS11940 d8a4d10ad3d1748cbc4ba14edcd8ebaf 329 Pfam PF09339 IclR helix-turn-helix domain 26 74 6.6E-14 T 23-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RPE_RS11940 d8a4d10ad3d1748cbc4ba14edcd8ebaf 329 Gene3D G3DSA:3.30.450.40 97 267 1.0E-27 T 23-04-2016 IPR029016 GAF domain-like RPE_RS23350 65fb58e773420dae7e51ae2eec2e73c9 160 SMART SM00260 2 143 3.3E-33 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS23350 65fb58e773420dae7e51ae2eec2e73c9 160 Gene3D G3DSA:2.40.50.180 45 76 6.0E-4 T 23-04-2016 RPE_RS23350 65fb58e773420dae7e51ae2eec2e73c9 160 Pfam PF01584 CheW-like domain 6 145 5.9E-30 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS23350 65fb58e773420dae7e51ae2eec2e73c9 160 SUPERFAMILY SSF50341 3 146 4.45E-32 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS23350 65fb58e773420dae7e51ae2eec2e73c9 160 PANTHER PTHR22617 3 159 1.5E-41 T 23-04-2016 RPE_RS23350 65fb58e773420dae7e51ae2eec2e73c9 160 Gene3D G3DSA:2.30.30.40 77 136 1.9E-5 T 23-04-2016 RPE_RS10925 9c37018d53a2804e606190c58ca38e4b 382 SMART SM00244 72 255 1.9E-27 T 23-04-2016 IPR001107 Band 7 domain RPE_RS10925 9c37018d53a2804e606190c58ca38e4b 382 SUPERFAMILY SSF117892 140 258 1.16E-16 T 23-04-2016 IPR001107 Band 7 domain RPE_RS10925 9c37018d53a2804e606190c58ca38e4b 382 Pfam PF12221 Bacterial membrane protein N terminal 1 51 5.2E-8 T 23-04-2016 IPR020980 Menbrane protein HflK, N-terminal RPE_RS10925 9c37018d53a2804e606190c58ca38e4b 382 Pfam PF01145 SPFH domain / Band 7 family 76 271 2.0E-25 T 23-04-2016 IPR001107 Band 7 domain RPE_RS10925 9c37018d53a2804e606190c58ca38e4b 382 TIGRFAM TIGR01933 hflK: HflK protein 75 350 1.3E-79 T 23-04-2016 IPR010201 HflK GO:0016021 RPE_RS10925 9c37018d53a2804e606190c58ca38e4b 382 PANTHER PTHR10264:SF51 147 370 5.0E-132 T 23-04-2016 IPR010201 HflK GO:0016021 RPE_RS10925 9c37018d53a2804e606190c58ca38e4b 382 PANTHER PTHR10264:SF51 1 126 5.0E-132 T 23-04-2016 IPR010201 HflK GO:0016021 RPE_RS10925 9c37018d53a2804e606190c58ca38e4b 382 PANTHER PTHR10264 147 370 5.0E-132 T 23-04-2016 IPR001972 Stomatin family GO:0016020 RPE_RS10925 9c37018d53a2804e606190c58ca38e4b 382 PANTHER PTHR10264 1 126 5.0E-132 T 23-04-2016 IPR001972 Stomatin family GO:0016020 RPE_RS16350 792d5aae7faa129e13db448650eb7d2a 449 Gene3D G3DSA:1.10.150.130 116 217 3.6E-12 T 23-04-2016 IPR023109 Integrase/recombinase, N-terminal RPE_RS16350 792d5aae7faa129e13db448650eb7d2a 449 Gene3D G3DSA:1.10.443.10 228 408 5.1E-29 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 RPE_RS16350 792d5aae7faa129e13db448650eb7d2a 449 Pfam PF13356 Domain of unknown function (DUF4102) 4 106 7.2E-14 T 23-04-2016 IPR025166 Domain of unknown function DUF4102 RPE_RS16350 792d5aae7faa129e13db448650eb7d2a 449 SUPERFAMILY SSF56349 116 411 1.85E-54 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RPE_RS16350 792d5aae7faa129e13db448650eb7d2a 449 Pfam PF00589 Phage integrase family 230 398 6.6E-22 T 23-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RPE_RS16350 792d5aae7faa129e13db448650eb7d2a 449 PANTHER PTHR30629:SF2 77 444 3.6E-73 T 23-04-2016 RPE_RS16350 792d5aae7faa129e13db448650eb7d2a 449 PANTHER PTHR30629:SF2 1 58 3.6E-73 T 23-04-2016 RPE_RS16350 792d5aae7faa129e13db448650eb7d2a 449 PANTHER PTHR30629 77 444 3.6E-73 T 23-04-2016 RPE_RS16350 792d5aae7faa129e13db448650eb7d2a 449 PANTHER PTHR30629 1 58 3.6E-73 T 23-04-2016 RPE_RS14385 2cd7e3f49ba41a336f5e46e6fc8b5439 315 PANTHER PTHR10992:SF305 3 161 2.0E-105 T 23-04-2016 RPE_RS14385 2cd7e3f49ba41a336f5e46e6fc8b5439 315 PANTHER PTHR10992:SF305 199 312 2.0E-105 T 23-04-2016 RPE_RS14385 2cd7e3f49ba41a336f5e46e6fc8b5439 315 SUPERFAMILY SSF53474 4 312 3.03E-76 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS14385 2cd7e3f49ba41a336f5e46e6fc8b5439 315 Gene3D G3DSA:3.40.50.1820 3 313 7.9E-86 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS14385 2cd7e3f49ba41a336f5e46e6fc8b5439 315 PANTHER PTHR10992 3 161 2.0E-105 T 23-04-2016 RPE_RS14385 2cd7e3f49ba41a336f5e46e6fc8b5439 315 PANTHER PTHR10992 199 312 2.0E-105 T 23-04-2016 RPE_RS14385 2cd7e3f49ba41a336f5e46e6fc8b5439 315 PRINTS PR00412 Epoxide hydrolase signature 49 64 9.5E-28 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RPE_RS14385 2cd7e3f49ba41a336f5e46e6fc8b5439 315 PRINTS PR00412 Epoxide hydrolase signature 109 122 9.5E-28 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RPE_RS14385 2cd7e3f49ba41a336f5e46e6fc8b5439 315 PRINTS PR00412 Epoxide hydrolase signature 249 265 9.5E-28 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RPE_RS14385 2cd7e3f49ba41a336f5e46e6fc8b5439 315 PRINTS PR00412 Epoxide hydrolase signature 287 309 9.5E-28 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RPE_RS14385 2cd7e3f49ba41a336f5e46e6fc8b5439 315 PRINTS PR00412 Epoxide hydrolase signature 29 47 9.5E-28 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RPE_RS14385 2cd7e3f49ba41a336f5e46e6fc8b5439 315 PRINTS PR00412 Epoxide hydrolase signature 95 108 9.5E-28 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RPE_RS14385 2cd7e3f49ba41a336f5e46e6fc8b5439 315 Pfam PF00561 alpha/beta hydrolase fold 23 298 3.9E-26 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS19135 3bd54323377188943fca1b9d67372abd 390 ProSitePatterns PS00737 Thiolases signature 2. 336 352 - T 23-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 RPE_RS19135 3bd54323377188943fca1b9d67372abd 390 SUPERFAMILY SSF53901 3 266 5.61E-65 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS19135 3bd54323377188943fca1b9d67372abd 390 PANTHER PTHR18919 1 390 1.2E-229 T 23-04-2016 RPE_RS19135 3bd54323377188943fca1b9d67372abd 390 Pfam PF00108 Thiolase, N-terminal domain 5 259 3.1E-62 T 23-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 RPE_RS19135 3bd54323377188943fca1b9d67372abd 390 Pfam PF02803 Thiolase, C-terminal domain 268 389 7.2E-43 T 23-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 RPE_RS19135 3bd54323377188943fca1b9d67372abd 390 SUPERFAMILY SSF53901 268 389 1.81E-40 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS19135 3bd54323377188943fca1b9d67372abd 390 Gene3D G3DSA:3.40.47.10 274 389 2.7E-53 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS19135 3bd54323377188943fca1b9d67372abd 390 Gene3D G3DSA:3.40.47.10 156 191 2.7E-53 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS19135 3bd54323377188943fca1b9d67372abd 390 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 388 4.1E-123 T 23-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RPE_RS19135 3bd54323377188943fca1b9d67372abd 390 Gene3D G3DSA:3.40.47.10 4 124 5.8E-56 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS19135 3bd54323377188943fca1b9d67372abd 390 Gene3D G3DSA:3.40.47.10 192 273 5.8E-56 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS19135 3bd54323377188943fca1b9d67372abd 390 PIRSF PIRSF000429 1 390 2.1E-115 T 23-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RPE_RS19135 3bd54323377188943fca1b9d67372abd 390 PANTHER PTHR18919:SF71 1 390 1.2E-229 T 23-04-2016 RPE_RS06765 d389c6712bdafbd38d097ba71621c01e 726 Pfam PF01590 GAF domain 146 309 7.0E-21 T 23-04-2016 IPR003018 GAF domain GO:0005515 RPE_RS06765 d389c6712bdafbd38d097ba71621c01e 726 SMART SM00065 145 319 2.3E-11 T 23-04-2016 IPR003018 GAF domain GO:0005515 RPE_RS06765 d389c6712bdafbd38d097ba71621c01e 726 PANTHER PTHR24423 90 439 1.6E-55 T 23-04-2016 RPE_RS06765 d389c6712bdafbd38d097ba71621c01e 726 PANTHER PTHR24423 499 634 1.6E-55 T 23-04-2016 RPE_RS06765 d389c6712bdafbd38d097ba71621c01e 726 Gene3D G3DSA:3.30.450.40 136 317 8.6E-13 T 23-04-2016 IPR029016 GAF domain-like RPE_RS06765 d389c6712bdafbd38d097ba71621c01e 726 SUPERFAMILY SSF55781 322 505 1.28E-51 T 23-04-2016 IPR029016 GAF domain-like RPE_RS06765 d389c6712bdafbd38d097ba71621c01e 726 Gene3D G3DSA:3.30.450.20 514 628 6.6E-9 T 23-04-2016 RPE_RS06765 d389c6712bdafbd38d097ba71621c01e 726 SUPERFAMILY SSF55781 135 319 1.09E-59 T 23-04-2016 IPR029016 GAF domain-like RPE_RS06765 d389c6712bdafbd38d097ba71621c01e 726 Pfam PF00360 Phytochrome region 325 504 4.2E-59 T 23-04-2016 IPR013515 Phytochrome, central region GO:0006355|GO:0009584|GO:0018298 RPE_RS06765 d389c6712bdafbd38d097ba71621c01e 726 PRINTS PR01033 Phytochrome signature 247 268 6.2E-20 T 23-04-2016 IPR001294 Phytochrome GO:0006355|GO:0009584 RPE_RS06765 d389c6712bdafbd38d097ba71621c01e 726 PRINTS PR01033 Phytochrome signature 430 449 6.2E-20 T 23-04-2016 IPR001294 Phytochrome GO:0006355|GO:0009584 RPE_RS06765 d389c6712bdafbd38d097ba71621c01e 726 PRINTS PR01033 Phytochrome signature 464 482 6.2E-20 T 23-04-2016 IPR001294 Phytochrome GO:0006355|GO:0009584 RPE_RS06765 d389c6712bdafbd38d097ba71621c01e 726 PRINTS PR01033 Phytochrome signature 160 179 6.2E-20 T 23-04-2016 IPR001294 Phytochrome GO:0006355|GO:0009584 RPE_RS06765 d389c6712bdafbd38d097ba71621c01e 726 PRINTS PR01033 Phytochrome signature 345 365 6.2E-20 T 23-04-2016 IPR001294 Phytochrome GO:0006355|GO:0009584 RPE_RS06765 d389c6712bdafbd38d097ba71621c01e 726 SUPERFAMILY SSF55785 7 123 6.15E-29 T 23-04-2016 IPR000014 PAS domain RPE_RS06765 d389c6712bdafbd38d097ba71621c01e 726 SUPERFAMILY SSF55785 530 636 5.93E-11 T 23-04-2016 IPR000014 PAS domain RPE_RS06765 d389c6712bdafbd38d097ba71621c01e 726 Pfam PF08446 PAS fold 19 122 7.3E-18 T 23-04-2016 IPR013654 PAS fold-2 GO:0006355 RPE_RS06765 d389c6712bdafbd38d097ba71621c01e 726 Pfam PF13426 PAS domain 528 629 1.0E-5 T 23-04-2016 IPR000014 PAS domain RPE_RS01155 a4a161133b163aef65a654f1f0dd1af3 444 PRINTS PR00344 Bacterial sensor protein C-terminal signature 349 363 3.5E-6 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS01155 a4a161133b163aef65a654f1f0dd1af3 444 PRINTS PR00344 Bacterial sensor protein C-terminal signature 388 406 3.5E-6 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS01155 a4a161133b163aef65a654f1f0dd1af3 444 SUPERFAMILY SSF47384 198 268 4.12E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS01155 a4a161133b163aef65a654f1f0dd1af3 444 PANTHER PTHR24423 186 429 1.0E-40 T 23-04-2016 RPE_RS01155 a4a161133b163aef65a654f1f0dd1af3 444 Gene3D G3DSA:3.30.565.10 278 431 7.2E-22 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS01155 a4a161133b163aef65a654f1f0dd1af3 444 Gene3D G3DSA:1.10.287.130 203 266 2.9E-5 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS01155 a4a161133b163aef65a654f1f0dd1af3 444 Pfam PF00512 His Kinase A (phospho-acceptor) domain 211 270 1.5E-6 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS01155 a4a161133b163aef65a654f1f0dd1af3 444 SMART SM00387 314 430 2.6E-18 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS01155 a4a161133b163aef65a654f1f0dd1af3 444 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 323 427 2.3E-13 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS01155 a4a161133b163aef65a654f1f0dd1af3 444 PANTHER PTHR24423:SF474 186 429 1.0E-40 T 23-04-2016 RPE_RS01155 a4a161133b163aef65a654f1f0dd1af3 444 SUPERFAMILY SSF55874 276 430 6.29E-23 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS01155 a4a161133b163aef65a654f1f0dd1af3 444 SMART SM00388 209 275 5.0E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS21600 4bf77b0d26117b0ab6d7b4b789c3247b 773 Gene3D G3DSA:3.30.365.10 193 298 9.7E-31 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS21600 4bf77b0d26117b0ab6d7b4b789c3247b 773 SMART SM01008 26 146 1.1E-50 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RPE_RS21600 4bf77b0d26117b0ab6d7b4b789c3247b 773 SUPERFAMILY SSF56003 138 769 2.09E-177 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS21600 4bf77b0d26117b0ab6d7b4b789c3247b 773 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 26 146 7.6E-26 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RPE_RS21600 4bf77b0d26117b0ab6d7b4b789c3247b 773 SUPERFAMILY SSF54665 11 168 2.49E-43 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RPE_RS21600 4bf77b0d26117b0ab6d7b4b789c3247b 773 Gene3D G3DSA:3.30.365.10 301 377 2.9E-41 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS21600 4bf77b0d26117b0ab6d7b4b789c3247b 773 Gene3D G3DSA:3.30.365.10 136 192 2.9E-41 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS21600 4bf77b0d26117b0ab6d7b4b789c3247b 773 Gene3D G3DSA:3.30.365.10 621 769 2.3E-63 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS21600 4bf77b0d26117b0ab6d7b4b789c3247b 773 Gene3D G3DSA:3.30.365.10 380 471 2.3E-63 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS21600 4bf77b0d26117b0ab6d7b4b789c3247b 773 PANTHER PTHR11908:SF85 597 773 0.0 T 23-04-2016 RPE_RS21600 4bf77b0d26117b0ab6d7b4b789c3247b 773 PANTHER PTHR11908:SF85 6 580 0.0 T 23-04-2016 RPE_RS21600 4bf77b0d26117b0ab6d7b4b789c3247b 773 Gene3D G3DSA:3.30.365.10 472 620 1.0E-31 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS21600 4bf77b0d26117b0ab6d7b4b789c3247b 773 Gene3D G3DSA:3.90.1170.50 12 135 2.5E-38 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RPE_RS21600 4bf77b0d26117b0ab6d7b4b789c3247b 773 PANTHER PTHR11908 597 773 0.0 T 23-04-2016 RPE_RS21600 4bf77b0d26117b0ab6d7b4b789c3247b 773 PANTHER PTHR11908 6 580 0.0 T 23-04-2016 RPE_RS21600 4bf77b0d26117b0ab6d7b4b789c3247b 773 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 164 704 1.2E-145 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS23240 16e6ac4e56bf2b40c60bb8aec7a10415 296 SUPERFAMILY SSF46785 3 86 1.84E-18 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS23240 16e6ac4e56bf2b40c60bb8aec7a10415 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 1.4E-15 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS23240 16e6ac4e56bf2b40c60bb8aec7a10415 296 PANTHER PTHR30419:SF4 2 290 7.3E-100 T 23-04-2016 RPE_RS23240 16e6ac4e56bf2b40c60bb8aec7a10415 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 38 49 3.2E-6 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS23240 16e6ac4e56bf2b40c60bb8aec7a10415 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 17 28 3.2E-6 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS23240 16e6ac4e56bf2b40c60bb8aec7a10415 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 38 3.2E-6 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS23240 16e6ac4e56bf2b40c60bb8aec7a10415 296 SUPERFAMILY SSF53850 86 294 1.45E-35 T 23-04-2016 RPE_RS23240 16e6ac4e56bf2b40c60bb8aec7a10415 296 Pfam PF03466 LysR substrate binding domain 86 291 5.6E-34 T 23-04-2016 IPR005119 LysR, substrate-binding RPE_RS23240 16e6ac4e56bf2b40c60bb8aec7a10415 296 PANTHER PTHR30419 2 290 7.3E-100 T 23-04-2016 RPE_RS23240 16e6ac4e56bf2b40c60bb8aec7a10415 296 Gene3D G3DSA:1.10.10.10 2 86 6.3E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS23240 16e6ac4e56bf2b40c60bb8aec7a10415 296 Gene3D G3DSA:3.40.190.10 87 180 6.0E-12 T 23-04-2016 RPE_RS23240 16e6ac4e56bf2b40c60bb8aec7a10415 296 Gene3D G3DSA:3.40.190.10 181 262 6.8E-12 T 23-04-2016 RPE_RS08640 0050c68746955c5ed069563c3b5dd943 173 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 1 139 25.487 T 23-04-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 RPE_RS08640 0050c68746955c5ed069563c3b5dd943 173 Pfam PF12838 4Fe-4S dicluster domain 52 106 1.1E-10 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RPE_RS08640 0050c68746955c5ed069563c3b5dd943 173 PANTHER PTHR10849 7 173 4.1E-62 T 23-04-2016 RPE_RS08640 0050c68746955c5ed069563c3b5dd943 173 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 10 130 2.1E-44 T 23-04-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 RPE_RS08640 0050c68746955c5ed069563c3b5dd943 173 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 92 103 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RPE_RS08640 0050c68746955c5ed069563c3b5dd943 173 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 53 64 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RPE_RS08640 0050c68746955c5ed069563c3b5dd943 173 SUPERFAMILY SSF54862 26 136 2.93E-25 T 23-04-2016 RPE_RS08640 0050c68746955c5ed069563c3b5dd943 173 PANTHER PTHR10849:SF13 7 173 4.1E-62 T 23-04-2016 RPE_RS08640 0050c68746955c5ed069563c3b5dd943 173 Gene3D G3DSA:3.30.70.20 26 110 3.6E-17 T 23-04-2016 RPE_RS22880 4ddcdfaa3f5f0a604daf889e76998c43 143 TIGRFAM TIGR02803 ExbD_1: TonB system transport protein ExbD 19 138 2.6E-54 T 23-04-2016 IPR014170 TonB system transport protein ExbD type-1 GO:0006810|GO:0016020 RPE_RS22880 4ddcdfaa3f5f0a604daf889e76998c43 143 PANTHER PTHR30558:SF9 13 142 6.2E-60 T 23-04-2016 RPE_RS22880 4ddcdfaa3f5f0a604daf889e76998c43 143 Pfam PF02472 Biopolymer transport protein ExbD/TolR 17 136 1.0E-26 T 23-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 RPE_RS22880 4ddcdfaa3f5f0a604daf889e76998c43 143 PANTHER PTHR30558 13 142 6.2E-60 T 23-04-2016 RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 PRINTS PR00681 Ribosomal protein S1 signature 117 133 5.8E-81 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 PRINTS PR00681 Ribosomal protein S1 signature 164 184 5.8E-81 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 PRINTS PR00681 Ribosomal protein S1 signature 299 318 5.8E-81 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 PRINTS PR00681 Ribosomal protein S1 signature 135 152 5.8E-81 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 PRINTS PR00681 Ribosomal protein S1 signature 221 242 5.8E-81 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 PRINTS PR00681 Ribosomal protein S1 signature 48 62 5.8E-81 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 PRINTS PR00681 Ribosomal protein S1 signature 339 357 5.8E-81 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 PRINTS PR00681 Ribosomal protein S1 signature 30 48 5.8E-81 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 PRINTS PR00681 Ribosomal protein S1 signature 93 112 5.8E-81 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 SUPERFAMILY SSF50249 198 285 2.64E-27 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 Gene3D G3DSA:2.40.50.140 367 446 5.1E-24 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 Gene3D G3DSA:2.40.50.140 184 273 1.1E-30 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 SMART SM00316 284 356 1.8E-23 T 23-04-2016 IPR022967 RNA-binding domain, S1 RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 SMART SM00316 371 443 1.3E-19 T 23-04-2016 IPR022967 RNA-binding domain, S1 RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 SMART SM00316 28 96 6.1E-8 T 23-04-2016 IPR022967 RNA-binding domain, S1 RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 SMART SM00316 112 180 4.9E-6 T 23-04-2016 IPR022967 RNA-binding domain, S1 RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 SMART SM00316 199 269 3.9E-28 T 23-04-2016 IPR022967 RNA-binding domain, S1 RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 SMART SM00316 457 529 3.2E-10 T 23-04-2016 IPR022967 RNA-binding domain, S1 RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 SUPERFAMILY SSF50249 438 543 1.5E-17 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 SUPERFAMILY SSF50249 356 446 3.36E-21 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 PANTHER PTHR10724:SF6 11 523 2.0E-228 T 23-04-2016 RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 Gene3D G3DSA:2.40.50.140 31 110 2.2E-10 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 Gene3D G3DSA:2.40.50.140 288 366 1.3E-27 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 Pfam PF00575 S1 RNA binding domain 456 529 6.8E-11 T 23-04-2016 IPR003029 S1 domain GO:0003676 RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 Pfam PF00575 S1 RNA binding domain 370 443 2.1E-16 T 23-04-2016 IPR003029 S1 domain GO:0003676 RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 Pfam PF00575 S1 RNA binding domain 29 95 4.6E-6 T 23-04-2016 IPR003029 S1 domain GO:0003676 RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 Pfam PF00575 S1 RNA binding domain 286 356 1.4E-20 T 23-04-2016 IPR003029 S1 domain GO:0003676 RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 Pfam PF00575 S1 RNA binding domain 112 180 6.5E-11 T 23-04-2016 IPR003029 S1 domain GO:0003676 RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 Pfam PF00575 S1 RNA binding domain 198 269 1.8E-22 T 23-04-2016 IPR003029 S1 domain GO:0003676 RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 SUPERFAMILY SSF50249 20 121 6.42E-17 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 SUPERFAMILY SSF50249 113 194 3.12E-12 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 Gene3D G3DSA:2.40.50.140 455 530 4.2E-13 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 Gene3D G3DSA:2.40.50.140 111 181 3.3E-12 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 PIRSF PIRSF002111 2 543 4.4E-193 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 13 529 8.3E-188 T 23-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 PANTHER PTHR10724 11 523 2.0E-228 T 23-04-2016 RPE_RS02255 ec82464ca2fdd502b007d852b8cef432 565 SUPERFAMILY SSF50249 264 380 3.51E-28 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS15575 3fd44d74998f83668e02d17256bdc5d9 191 PANTHER PTHR23117 13 190 1.5E-61 T 23-04-2016 RPE_RS15575 3fd44d74998f83668e02d17256bdc5d9 191 TIGRFAM TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN 16 190 2.4E-61 T 23-04-2016 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN GO:0006015|GO:0033863 KEGG: 00030+2.7.4.23|MetaCyc: PWY-5532|UniPathway: UPA00087 RPE_RS15575 3fd44d74998f83668e02d17256bdc5d9 191 SMART SM00072 15 191 3.4E-5 T 23-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit RPE_RS15575 3fd44d74998f83668e02d17256bdc5d9 191 Hamap MF_00836 Ribose 1,5-bisphosphate phosphokinase PhnN [phnN]. 15 190 31.568 T 23-04-2016 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN GO:0006015|GO:0033863 KEGG: 00030+2.7.4.23|MetaCyc: PWY-5532|UniPathway: UPA00087 RPE_RS15575 3fd44d74998f83668e02d17256bdc5d9 191 SUPERFAMILY SSF52540 11 190 6.39E-32 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15575 3fd44d74998f83668e02d17256bdc5d9 191 Pfam PF13671 AAA domain 18 150 3.7E-6 T 23-04-2016 RPE_RS15575 3fd44d74998f83668e02d17256bdc5d9 191 Gene3D G3DSA:3.40.50.300 27 71 3.6E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15575 3fd44d74998f83668e02d17256bdc5d9 191 PANTHER PTHR23117:SF8 13 190 1.5E-61 T 23-04-2016 RPE_RS15575 3fd44d74998f83668e02d17256bdc5d9 191 Gene3D G3DSA:3.40.50.300 11 26 2.9E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15575 3fd44d74998f83668e02d17256bdc5d9 191 Gene3D G3DSA:3.40.50.300 87 174 2.9E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS09490 c8d94ab7daed9dcba6deb07174aa6b07 567 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 365 560 2.6E-36 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS09490 c8d94ab7daed9dcba6deb07174aa6b07 567 Pfam PF17200 Single Cache domain 2 43 192 5.4E-48 T 23-04-2016 IPR033480 Single Cache domain 2 RPE_RS09490 c8d94ab7daed9dcba6deb07174aa6b07 567 Gene3D G3DSA:1.10.287.950 323 530 1.2E-49 T 23-04-2016 RPE_RS09490 c8d94ab7daed9dcba6deb07174aa6b07 567 PANTHER PTHR32089:SF40 285 564 9.5E-198 T 23-04-2016 RPE_RS09490 c8d94ab7daed9dcba6deb07174aa6b07 567 PANTHER PTHR32089:SF40 81 252 9.5E-198 T 23-04-2016 RPE_RS09490 c8d94ab7daed9dcba6deb07174aa6b07 567 SMART SM00283 307 561 3.6E-49 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS09490 c8d94ab7daed9dcba6deb07174aa6b07 567 SUPERFAMILY SSF158472 217 266 1.83E-12 T 23-04-2016 RPE_RS09490 c8d94ab7daed9dcba6deb07174aa6b07 567 PANTHER PTHR32089 285 564 9.5E-198 T 23-04-2016 RPE_RS09490 c8d94ab7daed9dcba6deb07174aa6b07 567 PANTHER PTHR32089 81 252 9.5E-198 T 23-04-2016 RPE_RS09490 c8d94ab7daed9dcba6deb07174aa6b07 567 SMART SM01049 40 134 4.5E-38 T 23-04-2016 IPR033480 Single Cache domain 2 RPE_RS09490 c8d94ab7daed9dcba6deb07174aa6b07 567 Pfam PF00672 HAMP domain 198 265 1.7E-16 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS09490 c8d94ab7daed9dcba6deb07174aa6b07 567 SMART SM00304 217 270 1.9E-13 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS09490 c8d94ab7daed9dcba6deb07174aa6b07 567 SUPERFAMILY SSF58104 280 560 7.06E-63 T 23-04-2016 RPE_RS09490 c8d94ab7daed9dcba6deb07174aa6b07 567 Gene3D G3DSA:3.30.450.20 33 187 1.5E-51 T 23-04-2016 RPE_RS08095 386dfc1da848ff88211bbc9d25af9007 80 Hamap MF_01926 Phosphoribosylformylglycinamidine synthase subunit PurS [purS]. 1 78 20.871 T 23-04-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RPE_RS08095 386dfc1da848ff88211bbc9d25af9007 80 PANTHER PTHR34696 1 77 9.1E-29 T 23-04-2016 RPE_RS08095 386dfc1da848ff88211bbc9d25af9007 80 Pfam PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase 2 77 1.2E-30 T 23-04-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RPE_RS08095 386dfc1da848ff88211bbc9d25af9007 80 TIGRFAM TIGR00302 TIGR00302: phosphoribosylformylglycinamidine synthase, purS protein 1 79 8.9E-25 T 23-04-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RPE_RS08095 386dfc1da848ff88211bbc9d25af9007 80 SUPERFAMILY SSF82697 1 77 1.92E-26 T 23-04-2016 RPE_RS08095 386dfc1da848ff88211bbc9d25af9007 80 Gene3D G3DSA:3.30.1280.10 1 79 3.1E-33 T 23-04-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RPE_RS08095 386dfc1da848ff88211bbc9d25af9007 80 ProDom PD010362 PHOSPHORIBOSYLFORMYLGLYCINAMIDINE PURS SYNTHETASE SYNTHASE COMPONENT SYNTHASE LIGASE FGAM UPF0062 I 9 77 4.0E-18 T 23-04-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RPE_RS10110 bb911abc1dfa7d90849497b2d34cc9de 370 Gene3D G3DSA:3.40.190.10 29 151 6.0E-9 T 23-04-2016 RPE_RS10110 bb911abc1dfa7d90849497b2d34cc9de 370 Gene3D G3DSA:3.40.190.10 152 318 7.7E-70 T 23-04-2016 RPE_RS10110 bb911abc1dfa7d90849497b2d34cc9de 370 PANTHER PTHR30222 13 370 3.2E-140 T 23-04-2016 RPE_RS10110 bb911abc1dfa7d90849497b2d34cc9de 370 PANTHER PTHR30222:SF11 13 370 3.2E-140 T 23-04-2016 RPE_RS10110 bb911abc1dfa7d90849497b2d34cc9de 370 Pfam PF13416 Bacterial extracellular solute-binding protein 46 322 1.1E-29 T 23-04-2016 RPE_RS10110 bb911abc1dfa7d90849497b2d34cc9de 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 182 201 1.5E-64 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RPE_RS10110 bb911abc1dfa7d90849497b2d34cc9de 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 219 238 1.5E-64 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RPE_RS10110 bb911abc1dfa7d90849497b2d34cc9de 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 36 52 1.5E-64 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RPE_RS10110 bb911abc1dfa7d90849497b2d34cc9de 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 314 340 1.5E-64 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RPE_RS10110 bb911abc1dfa7d90849497b2d34cc9de 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 95 108 1.5E-64 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RPE_RS10110 bb911abc1dfa7d90849497b2d34cc9de 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 159 173 1.5E-64 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RPE_RS10110 bb911abc1dfa7d90849497b2d34cc9de 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 79 93 1.5E-64 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RPE_RS10110 bb911abc1dfa7d90849497b2d34cc9de 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 128 144 1.5E-64 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RPE_RS10110 bb911abc1dfa7d90849497b2d34cc9de 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 52 73 1.5E-64 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RPE_RS10110 bb911abc1dfa7d90849497b2d34cc9de 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 269 288 1.5E-64 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RPE_RS10110 bb911abc1dfa7d90849497b2d34cc9de 370 SUPERFAMILY SSF53850 30 369 2.59E-93 T 23-04-2016 RPE_RS10110 bb911abc1dfa7d90849497b2d34cc9de 370 PIRSF PIRSF019574 1 370 2.6E-139 T 23-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 RPE_RS16685 9d246c01328be25d43122de1b05b8380 405 Gene3D G3DSA:2.40.50.100 66 99 3.1E-22 T 23-04-2016 RPE_RS16685 9d246c01328be25d43122de1b05b8380 405 Gene3D G3DSA:2.40.50.100 174 207 3.1E-22 T 23-04-2016 RPE_RS16685 9d246c01328be25d43122de1b05b8380 405 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 41 373 8.2E-74 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RPE_RS16685 9d246c01328be25d43122de1b05b8380 405 PANTHER PTHR30158:SF3 7 373 3.0E-139 T 23-04-2016 RPE_RS16685 9d246c01328be25d43122de1b05b8380 405 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 56 294 6.7E-13 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RPE_RS16685 9d246c01328be25d43122de1b05b8380 405 SUPERFAMILY SSF111369 54 301 2.88E-78 T 23-04-2016 RPE_RS16685 9d246c01328be25d43122de1b05b8380 405 PANTHER PTHR30158 7 373 3.0E-139 T 23-04-2016 RPE_RS10775 d089c3fcf290efebda8062575c5d64b8 175 PRINTS PR00108 Thymidylate synthase family signature 141 156 2.0E-33 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RPE_RS10775 d089c3fcf290efebda8062575c5d64b8 175 PRINTS PR00108 Thymidylate synthase family signature 115 134 2.0E-33 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RPE_RS10775 d089c3fcf290efebda8062575c5d64b8 175 PRINTS PR00108 Thymidylate synthase family signature 159 175 2.0E-33 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RPE_RS10775 d089c3fcf290efebda8062575c5d64b8 175 PRINTS PR00108 Thymidylate synthase family signature 42 63 2.0E-33 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RPE_RS10775 d089c3fcf290efebda8062575c5d64b8 175 ProSitePatterns PS00091 Thymidylate synthase active site. 126 154 - T 23-04-2016 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RPE_RS10775 d089c3fcf290efebda8062575c5d64b8 175 Pfam PF00303 Thymidylate synthase 2 174 7.8E-79 T 23-04-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RPE_RS10775 d089c3fcf290efebda8062575c5d64b8 175 Gene3D G3DSA:3.30.572.10 1 174 1.6E-85 T 23-04-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RPE_RS10775 d089c3fcf290efebda8062575c5d64b8 175 SUPERFAMILY SSF55831 1 174 2.22E-84 T 23-04-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RPE_RS10775 d089c3fcf290efebda8062575c5d64b8 175 PANTHER PTHR11548 1 174 4.0E-120 T 23-04-2016 RPE_RS10775 d089c3fcf290efebda8062575c5d64b8 175 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 2 84 2.0E-41 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RPE_RS10775 d089c3fcf290efebda8062575c5d64b8 175 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 85 174 3.3E-51 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RPE_RS12585 c20fdcd80341b9f21050c1f5cc9f100a 453 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 167 249 2.3E-13 T 23-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 RPE_RS12585 c20fdcd80341b9f21050c1f5cc9f100a 453 Pfam PF05697 Bacterial trigger factor protein (TF) 1 151 2.9E-35 T 23-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 RPE_RS12585 c20fdcd80341b9f21050c1f5cc9f100a 453 PANTHER PTHR30560 1 445 2.9E-112 T 23-04-2016 RPE_RS12585 c20fdcd80341b9f21050c1f5cc9f100a 453 Gene3D G3DSA:1.10.3120.10 225 403 7.7E-49 T 23-04-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 RPE_RS12585 c20fdcd80341b9f21050c1f5cc9f100a 453 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 270 428 2.1E-41 T 23-04-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 RPE_RS12585 c20fdcd80341b9f21050c1f5cc9f100a 453 PIRSF PIRSF003095 1 449 7.9E-127 T 23-04-2016 IPR005215 Trigger factor GO:0015031 RPE_RS12585 c20fdcd80341b9f21050c1f5cc9f100a 453 Gene3D G3DSA:3.10.50.40 162 224 1.1E-12 T 23-04-2016 RPE_RS12585 c20fdcd80341b9f21050c1f5cc9f100a 453 SUPERFAMILY SSF102735 1 139 1.03E-32 T 23-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 RPE_RS12585 c20fdcd80341b9f21050c1f5cc9f100a 453 SUPERFAMILY SSF54534 108 246 1.57E-29 T 23-04-2016 RPE_RS12585 c20fdcd80341b9f21050c1f5cc9f100a 453 Gene3D G3DSA:3.30.70.1050 1 125 5.1E-30 T 23-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 RPE_RS12585 c20fdcd80341b9f21050c1f5cc9f100a 453 Hamap MF_00303 Trigger factor [tig]. 1 433 19.846 T 23-04-2016 IPR005215 Trigger factor GO:0015031 RPE_RS12585 c20fdcd80341b9f21050c1f5cc9f100a 453 TIGRFAM TIGR00115 tig: trigger factor 11 427 5.5E-125 T 23-04-2016 IPR005215 Trigger factor GO:0015031 RPE_RS12585 c20fdcd80341b9f21050c1f5cc9f100a 453 PANTHER PTHR30560:SF3 1 445 2.9E-112 T 23-04-2016 RPE_RS12585 c20fdcd80341b9f21050c1f5cc9f100a 453 SUPERFAMILY SSF109998 259 444 4.05E-47 T 23-04-2016 IPR027304 Trigger factor/SurA domain RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 TIGRFAM TIGR00593 pola: DNA polymerase I 25 1012 2.9E-273 T 23-04-2016 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 SUPERFAMILY SSF56672 601 1012 1.05E-146 T 23-04-2016 RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 SMART SM00279 193 228 4.5E-13 T 23-04-2016 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 SMART SM00475 22 282 1.2E-117 T 23-04-2016 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 SUPERFAMILY SSF47807 191 305 2.24E-29 T 23-04-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 ProSitePatterns PS00447 DNA polymerase family A signature. 834 853 - T 23-04-2016 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 23 190 8.6E-55 T 23-04-2016 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 PANTHER PTHR10133 22 302 0.0 T 23-04-2016 RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 PANTHER PTHR10133 387 1011 0.0 T 23-04-2016 RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 SUPERFAMILY SSF88723 21 190 4.77E-52 T 23-04-2016 IPR029060 PIN domain-like RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 Gene3D G3DSA:3.30.70.370 743 791 1.3E-62 T 23-04-2016 RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 Gene3D G3DSA:3.30.70.370 899 1012 1.3E-62 T 23-04-2016 RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 Gene3D G3DSA:3.30.420.10 401 621 2.2E-70 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 SMART SM00474 401 597 2.0E-24 T 23-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 PRINTS PR00868 DNA-polymerase family A (pol I) signature 735 757 1.1E-71 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 PRINTS PR00868 DNA-polymerase family A (pol I) signature 893 904 1.1E-71 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 PRINTS PR00868 DNA-polymerase family A (pol I) signature 925 941 1.1E-71 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 PRINTS PR00868 DNA-polymerase family A (pol I) signature 834 859 1.1E-71 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 PRINTS PR00868 DNA-polymerase family A (pol I) signature 758 773 1.1E-71 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 PRINTS PR00868 DNA-polymerase family A (pol I) signature 810 823 1.1E-71 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 PRINTS PR00868 DNA-polymerase family A (pol I) signature 871 882 1.1E-71 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 PRINTS PR00868 DNA-polymerase family A (pol I) signature 780 803 1.1E-71 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 PRINTS PR00868 DNA-polymerase family A (pol I) signature 955 968 1.1E-71 T 23-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 191 286 9.1E-31 T 23-04-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 SUPERFAMILY SSF53098 398 596 1.9E-44 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 Pfam PF01612 3'-5' exonuclease 401 596 3.5E-26 T 23-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 Gene3D G3DSA:1.10.150.20 206 266 4.5E-26 T 23-04-2016 RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 SMART SM00482 766 972 2.9E-117 T 23-04-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 Gene3D G3DSA:1.10.150.20 792 898 5.1E-31 T 23-04-2016 RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 Pfam PF00476 DNA polymerase family A 630 1010 9.4E-144 T 23-04-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 Gene3D G3DSA:3.40.50.1010 23 205 4.1E-68 T 23-04-2016 IPR029060 PIN domain-like RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 Gene3D G3DSA:1.20.1060.10 622 742 3.2E-33 T 23-04-2016 RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 PANTHER PTHR10133:SF27 22 302 0.0 T 23-04-2016 RPE_RS24090 9a1e21881d984c23ea9c6361f4dd0431 1012 PANTHER PTHR10133:SF27 387 1011 0.0 T 23-04-2016 RPE_RS08670 e08bc7e9f27f4186559eb99abb2b2159 435 Gene3D G3DSA:3.90.1150.10 293 428 1.7E-43 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS08670 e08bc7e9f27f4186559eb99abb2b2159 435 PIRSF PIRSF001434 1 430 7.4E-121 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RPE_RS08670 e08bc7e9f27f4186559eb99abb2b2159 435 PANTHER PTHR11808 270 431 5.3E-216 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RPE_RS08670 e08bc7e9f27f4186559eb99abb2b2159 435 PANTHER PTHR11808 1 237 5.3E-216 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RPE_RS08670 e08bc7e9f27f4186559eb99abb2b2159 435 SUPERFAMILY SSF53383 6 426 1.04E-116 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS08670 e08bc7e9f27f4186559eb99abb2b2159 435 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 7 426 1.6E-182 T 23-04-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 RPE_RS08670 e08bc7e9f27f4186559eb99abb2b2159 435 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 8 426 1.2E-125 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RPE_RS08670 e08bc7e9f27f4186559eb99abb2b2159 435 Gene3D G3DSA:3.40.640.10 6 291 7.3E-110 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS08670 e08bc7e9f27f4186559eb99abb2b2159 435 PANTHER PTHR11808:SF12 270 431 5.3E-216 T 23-04-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 RPE_RS08670 e08bc7e9f27f4186559eb99abb2b2159 435 PANTHER PTHR11808:SF12 1 237 5.3E-216 T 23-04-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 RPE_RS01235 dc633f506dd211682b1138ff72153b11 175 Pfam PF06347 Bacterial SH3 domain 46 102 1.9E-22 T 23-04-2016 IPR010466 Protein of unknown function DUF1058 RPE_RS01235 dc633f506dd211682b1138ff72153b11 175 Pfam PF06347 Bacterial SH3 domain 113 167 8.2E-17 T 23-04-2016 IPR010466 Protein of unknown function DUF1058 RPE_RS17950 2b52853af7c12d6768407bebc9c07e0d 277 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 273 6.6E-127 T 23-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 RPE_RS17950 2b52853af7c12d6768407bebc9c07e0d 277 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 1.8E-32 T 23-04-2016 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17950 2b52853af7c12d6768407bebc9c07e0d 277 SMART SM01382 124 252 2.7E-91 T 23-04-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 RPE_RS17950 2b52853af7c12d6768407bebc9c07e0d 277 PIRSF PIRSF002158 3 275 2.9E-101 T 23-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17950 2b52853af7c12d6768407bebc9c07e0d 277 Gene3D G3DSA:2.30.30.30 119 195 1.8E-34 T 23-04-2016 IPR014722 Ribosomal protein L2 domain 2 RPE_RS17950 2b52853af7c12d6768407bebc9c07e0d 277 SUPERFAMILY SSF50249 2 125 7.54E-48 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS17950 2b52853af7c12d6768407bebc9c07e0d 277 Gene3D G3DSA:4.10.950.10 196 274 6.0E-34 T 23-04-2016 IPR014726 Ribosomal protein L2, domain 3 RPE_RS17950 2b52853af7c12d6768407bebc9c07e0d 277 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 250 8.6E-58 T 23-04-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 RPE_RS17950 2b52853af7c12d6768407bebc9c07e0d 277 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 277 46.63 T 23-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 RPE_RS17950 2b52853af7c12d6768407bebc9c07e0d 277 Gene3D G3DSA:2.40.50.140 1 114 1.6E-50 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS17950 2b52853af7c12d6768407bebc9c07e0d 277 SMART SM01383 42 118 2.9E-44 T 23-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17950 2b52853af7c12d6768407bebc9c07e0d 277 SUPERFAMILY SSF50104 126 272 2.17E-62 T 23-04-2016 IPR008991 Translation protein SH3-like domain RPE_RS17950 2b52853af7c12d6768407bebc9c07e0d 277 PANTHER PTHR13691 1 277 2.4E-140 T 23-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17950 2b52853af7c12d6768407bebc9c07e0d 277 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 23-04-2016 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 RPE_RS17950 2b52853af7c12d6768407bebc9c07e0d 277 PANTHER PTHR13691:SF5 1 277 2.4E-140 T 23-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 RPE_RS19390 4c8d2e5407c7026de2e0a754fb2b4ffc 708 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 509 520 2.4E-27 T 23-04-2016 RPE_RS19390 4c8d2e5407c7026de2e0a754fb2b4ffc 708 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 608 620 2.4E-27 T 23-04-2016 RPE_RS19390 4c8d2e5407c7026de2e0a754fb2b4ffc 708 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 382 396 2.4E-27 T 23-04-2016 RPE_RS19390 4c8d2e5407c7026de2e0a754fb2b4ffc 708 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 585 604 2.4E-27 T 23-04-2016 RPE_RS19390 4c8d2e5407c7026de2e0a754fb2b4ffc 708 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 240 254 2.4E-27 T 23-04-2016 RPE_RS19390 4c8d2e5407c7026de2e0a754fb2b4ffc 708 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 532 542 2.4E-27 T 23-04-2016 RPE_RS19390 4c8d2e5407c7026de2e0a754fb2b4ffc 708 Pfam PF00122 E1-E2 ATPase 165 373 1.6E-40 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 RPE_RS19390 4c8d2e5407c7026de2e0a754fb2b4ffc 708 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 585 601 1.4E-7 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 RPE_RS19390 4c8d2e5407c7026de2e0a754fb2b4ffc 708 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 616 641 1.4E-7 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 RPE_RS19390 4c8d2e5407c7026de2e0a754fb2b4ffc 708 Gene3D G3DSA:3.40.1110.10 398 511 1.5E-14 T 23-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 RPE_RS19390 4c8d2e5407c7026de2e0a754fb2b4ffc 708 PANTHER PTHR24093:SF50 159 667 4.0E-111 T 23-04-2016 RPE_RS19390 4c8d2e5407c7026de2e0a754fb2b4ffc 708 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 140 686 7.9E-140 T 23-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 RPE_RS19390 4c8d2e5407c7026de2e0a754fb2b4ffc 708 PANTHER PTHR24093 159 667 4.0E-111 T 23-04-2016 RPE_RS19390 4c8d2e5407c7026de2e0a754fb2b4ffc 708 Gene3D G3DSA:3.40.50.1000 512 652 6.2E-43 T 23-04-2016 IPR023214 HAD-like domain RPE_RS19390 4c8d2e5407c7026de2e0a754fb2b4ffc 708 Gene3D G3DSA:3.40.50.1000 359 397 6.2E-43 T 23-04-2016 IPR023214 HAD-like domain RPE_RS19390 4c8d2e5407c7026de2e0a754fb2b4ffc 708 Pfam PF00702 haloacid dehalogenase-like hydrolase 378 599 1.4E-35 T 23-04-2016 RPE_RS19390 4c8d2e5407c7026de2e0a754fb2b4ffc 708 Gene3D G3DSA:2.70.150.10 158 290 4.6E-26 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 RPE_RS19390 4c8d2e5407c7026de2e0a754fb2b4ffc 708 SUPERFAMILY SSF56784 382 400 2.41E-43 T 23-04-2016 IPR023214 HAD-like domain RPE_RS19390 4c8d2e5407c7026de2e0a754fb2b4ffc 708 SUPERFAMILY SSF56784 441 684 2.41E-43 T 23-04-2016 IPR023214 HAD-like domain RPE_RS19390 4c8d2e5407c7026de2e0a754fb2b4ffc 708 SUPERFAMILY SSF81653 193 289 7.72E-25 T 23-04-2016 RPE_RS19390 4c8d2e5407c7026de2e0a754fb2b4ffc 708 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 165 661 5.0E-65 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 RPE_RS19390 4c8d2e5407c7026de2e0a754fb2b4ffc 708 ProSitePatterns PS01229 Hypothetical cof family signature 2. 585 607 - T 23-04-2016 RPE_RS00955 e3c16d68d02477243f4aa1f00bfddc3e 385 PANTHER PTHR30386 34 377 4.1E-114 T 23-04-2016 RPE_RS00955 e3c16d68d02477243f4aa1f00bfddc3e 385 Gene3D G3DSA:2.40.50.100 76 109 1.2E-17 T 23-04-2016 RPE_RS00955 e3c16d68d02477243f4aa1f00bfddc3e 385 Gene3D G3DSA:2.40.50.100 233 267 1.2E-17 T 23-04-2016 RPE_RS00955 e3c16d68d02477243f4aa1f00bfddc3e 385 PANTHER PTHR30386:SF7 34 377 4.1E-114 T 23-04-2016 RPE_RS00955 e3c16d68d02477243f4aa1f00bfddc3e 385 Pfam PF13533 Biotin-lipoyl like 77 123 1.4E-15 T 23-04-2016 RPE_RS00955 e3c16d68d02477243f4aa1f00bfddc3e 385 SUPERFAMILY SSF111369 215 283 4.45E-5 T 23-04-2016 RPE_RS00955 e3c16d68d02477243f4aa1f00bfddc3e 385 Pfam PF00529 HlyD membrane-fusion protein of T1SS 149 364 5.1E-9 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RPE_RS00955 e3c16d68d02477243f4aa1f00bfddc3e 385 SUPERFAMILY SSF111369 157 193 1.01E-13 T 23-04-2016 RPE_RS00955 e3c16d68d02477243f4aa1f00bfddc3e 385 SUPERFAMILY SSF111369 74 128 1.01E-13 T 23-04-2016 RPE_RS00955 e3c16d68d02477243f4aa1f00bfddc3e 385 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 179 312 3.1E-14 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RPE_RS18950 5341bb7d67ce03406bdb81f9c6269dc2 410 PANTHER PTHR30483 6 404 5.8E-200 T 23-04-2016 RPE_RS18950 5341bb7d67ce03406bdb81f9c6269dc2 410 PANTHER PTHR30483:SF11 6 404 5.8E-200 T 23-04-2016 RPE_RS18950 5341bb7d67ce03406bdb81f9c6269dc2 410 SUPERFAMILY SSF53822 38 398 5.5E-74 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RPE_RS18950 5341bb7d67ce03406bdb81f9c6269dc2 410 Gene3D G3DSA:3.40.50.2300 321 364 2.6E-29 T 23-04-2016 RPE_RS18950 5341bb7d67ce03406bdb81f9c6269dc2 410 Gene3D G3DSA:3.40.50.2300 34 161 2.6E-29 T 23-04-2016 RPE_RS18950 5341bb7d67ce03406bdb81f9c6269dc2 410 Pfam PF13458 Periplasmic binding protein 38 390 2.0E-61 T 23-04-2016 IPR028081 Leucine-binding protein domain RPE_RS18950 5341bb7d67ce03406bdb81f9c6269dc2 410 Gene3D G3DSA:3.40.50.2300 162 320 1.5E-22 T 23-04-2016 RPE_RS02170 5c2eeca5eab291ee43732d8d8512ed31 153 PANTHER PTHR30505:SF6 1 146 5.3E-59 T 23-04-2016 RPE_RS02170 5c2eeca5eab291ee43732d8d8512ed31 153 TIGRFAM TIGR01419 nitro_reg_IIA: PTS IIA-like nitrogen-regulatory protein PtsN 3 145 7.6E-46 T 23-04-2016 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN GO:0008982|GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- RPE_RS02170 5c2eeca5eab291ee43732d8d8512ed31 153 Gene3D G3DSA:3.40.930.10 1 145 9.1E-46 T 23-04-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- RPE_RS02170 5c2eeca5eab291ee43732d8d8512ed31 153 SUPERFAMILY SSF55804 1 149 2.35E-42 T 23-04-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: REACT_15518 RPE_RS02170 5c2eeca5eab291ee43732d8d8512ed31 153 PANTHER PTHR30505 1 146 5.3E-59 T 23-04-2016 RPE_RS02170 5c2eeca5eab291ee43732d8d8512ed31 153 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 51 67 - T 23-04-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- RPE_RS02170 5c2eeca5eab291ee43732d8d8512ed31 153 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 8 145 2.9E-34 T 23-04-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- RPE_RS16515 78e065e59a6f9f5a54f010459c491445 388 PANTHER PTHR33529 1 386 5.5E-85 T 23-04-2016 RPE_RS16515 78e065e59a6f9f5a54f010459c491445 388 PANTHER PTHR33529:SF2 1 386 5.5E-85 T 23-04-2016 RPE_RS16515 78e065e59a6f9f5a54f010459c491445 388 Pfam PF03739 Predicted permease YjgP/YjgQ family 7 354 5.2E-62 T 23-04-2016 IPR005495 Permease LptG/LptF-related GO:0016021 RPE_RS16515 78e065e59a6f9f5a54f010459c491445 388 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 5 355 8.6E-85 T 23-04-2016 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 RPE_RS14030 9d950c807be87432a690c03f8028ace0 617 PIRSF PIRSF002741 10 613 9.8E-95 T 23-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RPE_RS14030 9d950c807be87432a690c03f8028ace0 617 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 116 526 5.3E-70 T 23-04-2016 IPR000914 Solute-binding protein family 5 domain RPE_RS14030 9d950c807be87432a690c03f8028ace0 617 PANTHER PTHR30290 400 610 1.7E-192 T 23-04-2016 RPE_RS14030 9d950c807be87432a690c03f8028ace0 617 SUPERFAMILY SSF53850 409 611 2.9E-113 T 23-04-2016 RPE_RS14030 9d950c807be87432a690c03f8028ace0 617 SUPERFAMILY SSF53850 66 375 2.9E-113 T 23-04-2016 RPE_RS14030 9d950c807be87432a690c03f8028ace0 617 PANTHER PTHR30290:SF2 400 610 1.7E-192 T 23-04-2016 RPE_RS14030 9d950c807be87432a690c03f8028ace0 617 PANTHER PTHR30290 7 372 1.7E-192 T 23-04-2016 RPE_RS14030 9d950c807be87432a690c03f8028ace0 617 Gene3D G3DSA:3.10.105.10 328 580 3.8E-41 T 23-04-2016 RPE_RS14030 9d950c807be87432a690c03f8028ace0 617 PANTHER PTHR30290:SF2 7 372 1.7E-192 T 23-04-2016 RPE_RS14030 9d950c807be87432a690c03f8028ace0 617 Gene3D G3DSA:3.90.76.10 80 233 1.2E-31 T 23-04-2016 RPE_RS20770 425f2a495c0a4769550d8b412a085620 698 SMART SM00283 438 692 1.8E-48 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS20770 425f2a495c0a4769550d8b412a085620 698 SUPERFAMILY SSF58104 413 691 1.96E-62 T 23-04-2016 RPE_RS20770 425f2a495c0a4769550d8b412a085620 698 PANTHER PTHR32089:SF40 416 695 9.1E-186 T 23-04-2016 RPE_RS20770 425f2a495c0a4769550d8b412a085620 698 PANTHER PTHR32089:SF40 282 382 9.1E-186 T 23-04-2016 RPE_RS20770 425f2a495c0a4769550d8b412a085620 698 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 496 691 4.6E-35 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS20770 425f2a495c0a4769550d8b412a085620 698 Gene3D G3DSA:1.10.287.950 455 662 9.8E-48 T 23-04-2016 RPE_RS20770 425f2a495c0a4769550d8b412a085620 698 PANTHER PTHR32089 416 695 9.1E-186 T 23-04-2016 RPE_RS20770 425f2a495c0a4769550d8b412a085620 698 Pfam PF00672 HAMP domain 329 390 4.6E-11 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS20770 425f2a495c0a4769550d8b412a085620 698 SUPERFAMILY SSF158472 348 391 1.7E-8 T 23-04-2016 RPE_RS20770 425f2a495c0a4769550d8b412a085620 698 SMART SM00304 347 400 2.1E-8 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS20770 425f2a495c0a4769550d8b412a085620 698 PANTHER PTHR32089 282 382 9.1E-186 T 23-04-2016 RPE_RS03830 bbaf83ed49a948dd387d6cffa99e4b6b 263 SUPERFAMILY SSF50331 196 263 4.89E-17 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RPE_RS03830 bbaf83ed49a948dd387d6cffa99e4b6b 263 SUPERFAMILY SSF50331 123 191 2.36E-19 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RPE_RS03830 bbaf83ed49a948dd387d6cffa99e4b6b 263 PIRSF PIRSF005763 1 263 5.3E-97 T 23-04-2016 IPR016462 Molybdate-dependent transcriptional regulator ModE GO:0006355|GO:0015689|GO:0030151 RPE_RS03830 bbaf83ed49a948dd387d6cffa99e4b6b 263 TIGRFAM TIGR00637 ModE_repress: ModE molybdate transport repressor domain 17 105 7.4E-30 T 23-04-2016 IPR003725 Molybdenum-binding protein ModE, N-terminal RPE_RS03830 bbaf83ed49a948dd387d6cffa99e4b6b 263 SUPERFAMILY SSF46785 4 108 3.47E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS03830 bbaf83ed49a948dd387d6cffa99e4b6b 263 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 20 82 3.6E-17 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS03830 bbaf83ed49a948dd387d6cffa99e4b6b 263 Gene3D G3DSA:1.10.10.10 3 125 1.4E-37 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS03830 bbaf83ed49a948dd387d6cffa99e4b6b 263 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 196 261 1.7E-17 T 23-04-2016 IPR004606 Molybdenum-pterin binding GO:0006810|GO:0030151 RPE_RS03830 bbaf83ed49a948dd387d6cffa99e4b6b 263 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 123 190 4.7E-20 T 23-04-2016 IPR004606 Molybdenum-pterin binding GO:0006810|GO:0030151 RPE_RS03830 bbaf83ed49a948dd387d6cffa99e4b6b 263 Gene3D G3DSA:2.40.50.100 126 190 1.0E-23 T 23-04-2016 RPE_RS03830 bbaf83ed49a948dd387d6cffa99e4b6b 263 Gene3D G3DSA:2.40.50.100 195 263 5.3E-21 T 23-04-2016 RPE_RS03830 bbaf83ed49a948dd387d6cffa99e4b6b 263 Pfam PF03459 TOBE domain 198 259 2.4E-13 T 23-04-2016 IPR005116 Transport-associated OB, type 1 RPE_RS03830 bbaf83ed49a948dd387d6cffa99e4b6b 263 Pfam PF03459 TOBE domain 125 187 5.7E-13 T 23-04-2016 IPR005116 Transport-associated OB, type 1 RPE_RS03830 bbaf83ed49a948dd387d6cffa99e4b6b 263 PANTHER PTHR30432 1 263 2.3E-40 T 23-04-2016 RPE_RS10105 f9e7a3cdf183ea24010d832e0f896c9a 384 PANTHER PTHR11751 4 384 1.2E-140 T 23-04-2016 RPE_RS10105 f9e7a3cdf183ea24010d832e0f896c9a 384 Gene3D G3DSA:3.40.640.10 38 264 6.4E-70 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS10105 f9e7a3cdf183ea24010d832e0f896c9a 384 SUPERFAMILY SSF53383 2 381 6.52E-102 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS10105 f9e7a3cdf183ea24010d832e0f896c9a 384 Gene3D G3DSA:3.90.1150.10 265 383 8.0E-22 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS10105 f9e7a3cdf183ea24010d832e0f896c9a 384 Pfam PF00155 Aminotransferase class I and II 24 377 2.5E-62 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RPE_RS10105 f9e7a3cdf183ea24010d832e0f896c9a 384 PANTHER PTHR11751:SF301 4 384 1.2E-140 T 23-04-2016 RPE_RS18835 7673edeba7f34c08b1a3d33d5249a3ad 623 SUPERFAMILY SSF53850 82 610 6.15E-102 T 23-04-2016 RPE_RS18835 7673edeba7f34c08b1a3d33d5249a3ad 623 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 117 525 4.7E-61 T 23-04-2016 IPR000914 Solute-binding protein family 5 domain RPE_RS18835 7673edeba7f34c08b1a3d33d5249a3ad 623 PANTHER PTHR30290:SF2 400 622 1.5E-182 T 23-04-2016 RPE_RS18835 7673edeba7f34c08b1a3d33d5249a3ad 623 PANTHER PTHR30290:SF2 4 373 1.5E-182 T 23-04-2016 RPE_RS18835 7673edeba7f34c08b1a3d33d5249a3ad 623 PANTHER PTHR30290 400 622 1.5E-182 T 23-04-2016 RPE_RS18835 7673edeba7f34c08b1a3d33d5249a3ad 623 PANTHER PTHR30290 4 373 1.5E-182 T 23-04-2016 RPE_RS18835 7673edeba7f34c08b1a3d33d5249a3ad 623 Gene3D G3DSA:3.90.76.10 112 185 1.9E-17 T 23-04-2016 RPE_RS18835 7673edeba7f34c08b1a3d33d5249a3ad 623 Gene3D G3DSA:3.40.190.10 186 339 1.1E-21 T 23-04-2016 RPE_RS18835 7673edeba7f34c08b1a3d33d5249a3ad 623 Gene3D G3DSA:3.10.105.10 410 580 3.4E-39 T 23-04-2016 RPE_RS18835 7673edeba7f34c08b1a3d33d5249a3ad 623 Gene3D G3DSA:3.10.105.10 340 377 3.4E-39 T 23-04-2016 RPE_RS18835 7673edeba7f34c08b1a3d33d5249a3ad 623 PIRSF PIRSF002741 21 614 7.8E-81 T 23-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RPE_RS24395 339ce9f0a388b359174683674faa5d48 130 SUPERFAMILY SSF110069 5 127 3.92E-49 T 23-04-2016 IPR007474 ApaG domain RPE_RS24395 339ce9f0a388b359174683674faa5d48 130 Pfam PF04379 Protein of unknown function (DUF525) 20 104 4.3E-36 T 23-04-2016 IPR007474 ApaG domain RPE_RS24395 339ce9f0a388b359174683674faa5d48 130 Gene3D G3DSA:2.60.40.1470 3 124 1.7E-50 T 23-04-2016 IPR007474 ApaG domain RPE_RS24395 339ce9f0a388b359174683674faa5d48 130 PANTHER PTHR14289 4 124 2.5E-58 T 23-04-2016 RPE_RS24395 339ce9f0a388b359174683674faa5d48 130 Hamap MF_00791 Protein ApaG [apaG]. 2 130 33.027 T 23-04-2016 IPR023065 Uncharacterised protein family ApaG RPE_RS07240 b41521e1966511c0463f7970000be71d 365 SUPERFAMILY SSF81271 281 362 2.62E-35 T 23-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 RPE_RS07240 b41521e1966511c0463f7970000be71d 365 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 364 2.6E-150 T 23-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 RPE_RS07240 b41521e1966511c0463f7970000be71d 365 SUPERFAMILY SSF52540 3 303 5.26E-81 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS07240 b41521e1966511c0463f7970000be71d 365 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 365 43.282 T 23-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 RPE_RS07240 b41521e1966511c0463f7970000be71d 365 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 6.2E-35 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RPE_RS07240 b41521e1966511c0463f7970000be71d 365 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 71 86 6.2E-35 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RPE_RS07240 b41521e1966511c0463f7970000be71d 365 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 27 45 6.2E-35 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RPE_RS07240 b41521e1966511c0463f7970000be71d 365 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 88 106 6.2E-35 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RPE_RS07240 b41521e1966511c0463f7970000be71d 365 Pfam PF06071 Protein of unknown function (DUF933) 281 364 1.9E-39 T 23-04-2016 IPR013029 Domain of unknown function DUF933 RPE_RS07240 b41521e1966511c0463f7970000be71d 365 PIRSF PIRSF006641 1 365 1.3E-153 T 23-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 RPE_RS07240 b41521e1966511c0463f7970000be71d 365 Pfam PF01926 50S ribosome-binding GTPase 5 127 2.6E-24 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RPE_RS07240 b41521e1966511c0463f7970000be71d 365 Gene3D G3DSA:1.10.150.300 133 201 5.9E-24 T 23-04-2016 IPR023192 TGS-like domain RPE_RS07240 b41521e1966511c0463f7970000be71d 365 PANTHER PTHR23305 1 365 5.9E-202 T 23-04-2016 RPE_RS07240 b41521e1966511c0463f7970000be71d 365 PANTHER PTHR23305:SF12 1 365 5.9E-202 T 23-04-2016 RPE_RS07240 b41521e1966511c0463f7970000be71d 365 Gene3D G3DSA:3.10.20.30 270 364 2.4E-48 T 23-04-2016 IPR012675 Beta-grasp domain RPE_RS07240 b41521e1966511c0463f7970000be71d 365 Gene3D G3DSA:3.40.50.300 4 132 2.6E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS07240 b41521e1966511c0463f7970000be71d 365 Gene3D G3DSA:3.40.50.300 202 269 2.6E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS11695 cd92a563d7017c2cd9be9c376e36802a 260 Gene3D G3DSA:1.20.1540.10 60 246 4.0E-31 T 23-04-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 RPE_RS11695 cd92a563d7017c2cd9be9c376e36802a 260 Pfam PF01694 Rhomboid family 77 245 6.3E-26 T 23-04-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 RPE_RS11695 cd92a563d7017c2cd9be9c376e36802a 260 SUPERFAMILY SSF144091 20 250 3.79E-30 T 23-04-2016 RPE_RS11695 cd92a563d7017c2cd9be9c376e36802a 260 PANTHER PTHR22936 182 257 4.0E-22 T 23-04-2016 IPR002610 Peptidase S54, rhomboid GO:0004252|GO:0006508|GO:0016021 RPE_RS11695 cd92a563d7017c2cd9be9c376e36802a 260 PANTHER PTHR22936 78 157 4.0E-22 T 23-04-2016 IPR002610 Peptidase S54, rhomboid GO:0004252|GO:0006508|GO:0016021 RPE_RS13720 66440dcc985ffc3e73b288d546e31b3e 345 PANTHER PTHR10314 3 339 1.1E-153 T 23-04-2016 RPE_RS13720 66440dcc985ffc3e73b288d546e31b3e 345 Gene3D G3DSA:3.40.50.1100 43 150 3.3E-34 T 23-04-2016 RPE_RS13720 66440dcc985ffc3e73b288d546e31b3e 345 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 9 306 4.3E-65 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RPE_RS13720 66440dcc985ffc3e73b288d546e31b3e 345 SUPERFAMILY SSF53686 2 326 2.88E-93 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RPE_RS13720 66440dcc985ffc3e73b288d546e31b3e 345 PANTHER PTHR10314:SF83 3 339 1.1E-153 T 23-04-2016 RPE_RS13720 66440dcc985ffc3e73b288d546e31b3e 345 Gene3D G3DSA:3.40.50.1100 3 42 4.5E-67 T 23-04-2016 RPE_RS13720 66440dcc985ffc3e73b288d546e31b3e 345 Gene3D G3DSA:3.40.50.1100 157 324 4.5E-67 T 23-04-2016 RPE_RS13720 66440dcc985ffc3e73b288d546e31b3e 345 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 33 51 - T 23-04-2016 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 RPE_RS09800 b9c5c20f3a9fcb418f12a6e4084ecd8d 771 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 649 758 2.4E-22 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS09800 b9c5c20f3a9fcb418f12a6e4084ecd8d 771 SMART SM00387 648 760 4.7E-34 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS09800 b9c5c20f3a9fcb418f12a6e4084ecd8d 771 Pfam PF12860 PAS fold 378 483 2.6E-14 T 23-04-2016 RPE_RS09800 b9c5c20f3a9fcb418f12a6e4084ecd8d 771 Pfam PF08447 PAS fold 267 339 8.0E-8 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 RPE_RS09800 b9c5c20f3a9fcb418f12a6e4084ecd8d 771 Gene3D G3DSA:1.10.287.130 527 599 8.8E-19 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS09800 b9c5c20f3a9fcb418f12a6e4084ecd8d 771 PRINTS PR00344 Bacterial sensor protein C-terminal signature 685 699 1.5E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS09800 b9c5c20f3a9fcb418f12a6e4084ecd8d 771 PRINTS PR00344 Bacterial sensor protein C-terminal signature 744 757 1.5E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS09800 b9c5c20f3a9fcb418f12a6e4084ecd8d 771 PRINTS PR00344 Bacterial sensor protein C-terminal signature 720 738 1.5E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS09800 b9c5c20f3a9fcb418f12a6e4084ecd8d 771 Gene3D G3DSA:3.30.565.10 603 762 1.3E-41 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS09800 b9c5c20f3a9fcb418f12a6e4084ecd8d 771 PANTHER PTHR24423 513 759 7.0E-130 T 23-04-2016 RPE_RS09800 b9c5c20f3a9fcb418f12a6e4084ecd8d 771 PANTHER PTHR24423 243 477 7.0E-130 T 23-04-2016 RPE_RS09800 b9c5c20f3a9fcb418f12a6e4084ecd8d 771 SUPERFAMILY SSF55874 592 758 2.23E-45 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS09800 b9c5c20f3a9fcb418f12a6e4084ecd8d 771 Gene3D G3DSA:3.30.450.20 371 477 2.3E-9 T 23-04-2016 RPE_RS09800 b9c5c20f3a9fcb418f12a6e4084ecd8d 771 SUPERFAMILY SSF55785 357 477 9.25E-10 T 23-04-2016 IPR000014 PAS domain RPE_RS09800 b9c5c20f3a9fcb418f12a6e4084ecd8d 771 Pfam PF00512 His Kinase A (phospho-acceptor) domain 535 603 2.3E-18 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS09800 b9c5c20f3a9fcb418f12a6e4084ecd8d 771 PANTHER PTHR24423:SF480 513 759 7.0E-130 T 23-04-2016 RPE_RS09800 b9c5c20f3a9fcb418f12a6e4084ecd8d 771 PANTHER PTHR24423:SF480 243 477 7.0E-130 T 23-04-2016 RPE_RS09800 b9c5c20f3a9fcb418f12a6e4084ecd8d 771 SUPERFAMILY SSF47384 518 604 3.34E-21 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS09800 b9c5c20f3a9fcb418f12a6e4084ecd8d 771 SMART SM00388 534 603 8.4E-22 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS09800 b9c5c20f3a9fcb418f12a6e4084ecd8d 771 Gene3D G3DSA:3.30.450.20 245 363 2.2E-13 T 23-04-2016 RPE_RS09800 b9c5c20f3a9fcb418f12a6e4084ecd8d 771 SUPERFAMILY SSF55785 251 361 1.06E-12 T 23-04-2016 IPR000014 PAS domain RPE_RS09800 b9c5c20f3a9fcb418f12a6e4084ecd8d 771 SMART SM00086 318 360 3.8E-4 T 23-04-2016 IPR001610 PAC motif RPE_RS04620 96b994214fff03bfb4862f6780ecaf23 284 Pfam PF13344 Haloacid dehalogenase-like hydrolase 20 117 2.7E-16 T 23-04-2016 IPR006357 HAD-superfamily hydrolase, subfamily IIA RPE_RS04620 96b994214fff03bfb4862f6780ecaf23 284 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 20 248 3.5E-40 T 23-04-2016 IPR006357 HAD-superfamily hydrolase, subfamily IIA RPE_RS04620 96b994214fff03bfb4862f6780ecaf23 284 PANTHER PTHR19288:SF3 7 268 1.3E-74 T 23-04-2016 RPE_RS04620 96b994214fff03bfb4862f6780ecaf23 284 SUPERFAMILY SSF56784 17 254 1.26E-43 T 23-04-2016 IPR023214 HAD-like domain RPE_RS04620 96b994214fff03bfb4862f6780ecaf23 284 TIGRFAM TIGR01459 HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family 11 247 1.5E-47 T 23-04-2016 IPR006356 HAD-superfamily hydrolase, subfamily IIA, hypothetical 3 RPE_RS04620 96b994214fff03bfb4862f6780ecaf23 284 Gene3D G3DSA:3.40.50.1000 191 256 1.3E-27 T 23-04-2016 IPR023214 HAD-like domain RPE_RS04620 96b994214fff03bfb4862f6780ecaf23 284 Gene3D G3DSA:3.40.50.1000 16 93 1.3E-27 T 23-04-2016 IPR023214 HAD-like domain RPE_RS04620 96b994214fff03bfb4862f6780ecaf23 284 Pfam PF13242 HAD-hyrolase-like 195 254 3.0E-12 T 23-04-2016 RPE_RS04620 96b994214fff03bfb4862f6780ecaf23 284 PANTHER PTHR19288 7 268 1.3E-74 T 23-04-2016 RPE_RS06045 75369a374d232fbf7fc6ac211ddca533 713 SMART SM01231 298 361 3.5E-22 T 23-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RPE_RS06045 75369a374d232fbf7fc6ac211ddca533 713 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 299 361 3.8E-15 T 23-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RPE_RS06045 75369a374d232fbf7fc6ac211ddca533 713 Pfam PF01627 Hpt domain 15 105 6.2E-16 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS06045 75369a374d232fbf7fc6ac211ddca533 713 SUPERFAMILY SSF47226 13 133 1.31E-26 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS06045 75369a374d232fbf7fc6ac211ddca533 713 PRINTS PR00344 Bacterial sensor protein C-terminal signature 531 544 2.0E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS06045 75369a374d232fbf7fc6ac211ddca533 713 PRINTS PR00344 Bacterial sensor protein C-terminal signature 491 501 2.0E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS06045 75369a374d232fbf7fc6ac211ddca533 713 PRINTS PR00344 Bacterial sensor protein C-terminal signature 451 465 2.0E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS06045 75369a374d232fbf7fc6ac211ddca533 713 PRINTS PR00344 Bacterial sensor protein C-terminal signature 507 525 2.0E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS06045 75369a374d232fbf7fc6ac211ddca533 713 SUPERFAMILY SSF55874 365 545 4.71E-39 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS06045 75369a374d232fbf7fc6ac211ddca533 713 SMART SM00073 12 109 8.3E-26 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS06045 75369a374d232fbf7fc6ac211ddca533 713 Gene3D G3DSA:3.30.565.10 365 546 9.1E-35 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS06045 75369a374d232fbf7fc6ac211ddca533 713 SMART SM00260 539 680 4.4E-34 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS06045 75369a374d232fbf7fc6ac211ddca533 713 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 409 546 2.2E-18 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS06045 75369a374d232fbf7fc6ac211ddca533 713 PANTHER PTHR22617:SF20 12 696 1.2E-214 T 23-04-2016 RPE_RS06045 75369a374d232fbf7fc6ac211ddca533 713 SMART SM00387 406 547 3.1E-30 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS06045 75369a374d232fbf7fc6ac211ddca533 713 Gene3D G3DSA:1.10.287.560 299 362 9.0E-19 T 23-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RPE_RS06045 75369a374d232fbf7fc6ac211ddca533 713 SUPERFAMILY SSF47384 299 362 1.96E-13 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS06045 75369a374d232fbf7fc6ac211ddca533 713 Gene3D G3DSA:2.40.50.180 571 626 1.1E-9 T 23-04-2016 RPE_RS06045 75369a374d232fbf7fc6ac211ddca533 713 PANTHER PTHR22617 12 696 1.2E-214 T 23-04-2016 RPE_RS06045 75369a374d232fbf7fc6ac211ddca533 713 Pfam PF01584 CheW-like domain 552 679 2.3E-24 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS06045 75369a374d232fbf7fc6ac211ddca533 713 Gene3D G3DSA:2.30.30.40 635 679 6.4E-23 T 23-04-2016 RPE_RS06045 75369a374d232fbf7fc6ac211ddca533 713 Gene3D G3DSA:2.30.30.40 547 568 6.4E-23 T 23-04-2016 RPE_RS06045 75369a374d232fbf7fc6ac211ddca533 713 Gene3D G3DSA:1.20.120.160 13 150 1.6E-32 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS06045 75369a374d232fbf7fc6ac211ddca533 713 SUPERFAMILY SSF50341 546 679 4.97E-30 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS04155 43c14769bb03504d2148be5728832054 511 PANTHER PTHR33908:SF2 9 430 2.1E-52 T 23-04-2016 RPE_RS04155 43c14769bb03504d2148be5728832054 511 PANTHER PTHR33908 9 430 2.1E-52 T 23-04-2016 RPE_RS04155 43c14769bb03504d2148be5728832054 511 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 73 233 6.3E-29 T 23-04-2016 RPE_RS22115 aab40e4d87492695f76df72ea332d299 316 PANTHER PTHR13947 132 316 9.4E-59 T 23-04-2016 RPE_RS22115 aab40e4d87492695f76df72ea332d299 316 Gene3D G3DSA:3.40.630.30 150 302 1.2E-34 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS22115 aab40e4d87492695f76df72ea332d299 316 PANTHER PTHR13947:SF16 132 316 9.4E-59 T 23-04-2016 RPE_RS22115 aab40e4d87492695f76df72ea332d299 316 Pfam PF12802 MarR family 34 92 5.0E-14 T 23-04-2016 RPE_RS22115 aab40e4d87492695f76df72ea332d299 316 SMART SM00347 28 128 7.9E-9 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RPE_RS22115 aab40e4d87492695f76df72ea332d299 316 Gene3D G3DSA:1.10.10.10 10 143 4.5E-33 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS22115 aab40e4d87492695f76df72ea332d299 316 SUPERFAMILY SSF46785 8 142 3.29E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS22115 aab40e4d87492695f76df72ea332d299 316 Pfam PF00583 Acetyltransferase (GNAT) family 206 282 2.9E-14 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RPE_RS22115 aab40e4d87492695f76df72ea332d299 316 SUPERFAMILY SSF55729 152 292 2.87E-29 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS15000 05d2df11cd388880229ed00f5f2fb1fa 151 Gene3D G3DSA:3.40.50.9100 4 145 1.8E-63 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RPE_RS15000 05d2df11cd388880229ed00f5f2fb1fa 151 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 5 143 1.8E-55 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RPE_RS15000 05d2df11cd388880229ed00f5f2fb1fa 151 Pfam PF01220 Dehydroquinase class II 5 140 4.9E-58 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RPE_RS15000 05d2df11cd388880229ed00f5f2fb1fa 151 SUPERFAMILY SSF52304 4 145 3.4E-60 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RPE_RS15000 05d2df11cd388880229ed00f5f2fb1fa 151 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 151 69.308 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RPE_RS15000 05d2df11cd388880229ed00f5f2fb1fa 151 PIRSF PIRSF001399 1 147 2.2E-60 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RPE_RS15000 05d2df11cd388880229ed00f5f2fb1fa 151 ProSitePatterns PS01029 Dehydroquinase class II signature. 8 25 - T 23-04-2016 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RPE_RS15000 05d2df11cd388880229ed00f5f2fb1fa 151 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 5 143 2.0E-76 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RPE_RS15000 05d2df11cd388880229ed00f5f2fb1fa 151 PANTHER PTHR21272 1 151 1.0E-86 T 23-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 RPE_RS17845 ac3cf78bbd9aa04f1a7155590228069d 343 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 32 323 4.1E-116 T 23-04-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RPE_RS17845 ac3cf78bbd9aa04f1a7155590228069d 343 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 263 332 6.0E-35 T 23-04-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RPE_RS17845 ac3cf78bbd9aa04f1a7155590228069d 343 SMART SM00662 31 238 3.2E-93 T 23-04-2016 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RPE_RS17845 ac3cf78bbd9aa04f1a7155590228069d 343 Gene3D G3DSA:2.170.120.12 75 181 1.3E-43 T 23-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RPE_RS17845 ac3cf78bbd9aa04f1a7155590228069d 343 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 11 323 35.762 T 23-04-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RPE_RS17845 ac3cf78bbd9aa04f1a7155590228069d 343 SUPERFAMILY SSF55257 183 235 1.44E-30 T 23-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RPE_RS17845 ac3cf78bbd9aa04f1a7155590228069d 343 SUPERFAMILY SSF55257 11 61 1.44E-30 T 23-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RPE_RS17845 ac3cf78bbd9aa04f1a7155590228069d 343 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 37 232 3.1E-23 T 23-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RPE_RS17845 ac3cf78bbd9aa04f1a7155590228069d 343 Gene3D G3DSA:3.30.1360.10 27 74 2.2E-8 T 23-04-2016 RPE_RS17845 ac3cf78bbd9aa04f1a7155590228069d 343 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 259 314 4.4E-25 T 23-04-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RPE_RS17845 ac3cf78bbd9aa04f1a7155590228069d 343 SUPERFAMILY SSF47789 257 332 5.49E-27 T 23-04-2016 RPE_RS17845 ac3cf78bbd9aa04f1a7155590228069d 343 Gene3D G3DSA:1.10.150.20 254 334 2.0E-36 T 23-04-2016 RPE_RS17845 ac3cf78bbd9aa04f1a7155590228069d 343 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 70 163 1.3E-21 T 23-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RPE_RS17845 ac3cf78bbd9aa04f1a7155590228069d 343 PANTHER PTHR32108 6 336 4.3E-138 T 23-04-2016 RPE_RS17845 ac3cf78bbd9aa04f1a7155590228069d 343 SUPERFAMILY SSF56553 61 182 9.81E-41 T 23-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RPE_RS17845 ac3cf78bbd9aa04f1a7155590228069d 343 PANTHER PTHR32108:SF0 6 336 4.3E-138 T 23-04-2016 RPE_RS10715 46591dfb15ca0f526ef0ab0e835d37a4 97 Pfam PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system 4 84 3.0E-17 T 23-04-2016 IPR031807 HicB-like antitoxin of toxin-antitoxin system RPE_RS10715 46591dfb15ca0f526ef0ab0e835d37a4 97 SUPERFAMILY SSF143100 2 44 6.8E-14 T 23-04-2016 RPE_RS05450 dd271907b047943fcf3fc1b9f544a552 486 SMART SM00857 16 166 1.4E-29 T 23-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RPE_RS05450 dd271907b047943fcf3fc1b9f544a552 486 Pfam PF07508 Recombinase 191 311 5.3E-13 T 23-04-2016 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 RPE_RS05450 dd271907b047943fcf3fc1b9f544a552 486 SUPERFAMILY SSF53041 15 165 1.44E-22 T 23-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RPE_RS05450 dd271907b047943fcf3fc1b9f544a552 486 Pfam PF13408 Recombinase zinc beta ribbon domain 329 386 4.4E-7 T 23-04-2016 IPR025827 Recombinase zinc beta ribbon domain RPE_RS05450 dd271907b047943fcf3fc1b9f544a552 486 PANTHER PTHR30461:SF3 15 471 2.6E-53 T 23-04-2016 RPE_RS05450 dd271907b047943fcf3fc1b9f544a552 486 PANTHER PTHR30461 15 471 2.6E-53 T 23-04-2016 RPE_RS05450 dd271907b047943fcf3fc1b9f544a552 486 Gene3D G3DSA:3.40.50.1390 15 146 7.4E-15 T 23-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RPE_RS05450 dd271907b047943fcf3fc1b9f544a552 486 Pfam PF00239 Resolvase, N terminal domain 16 165 7.8E-22 T 23-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RPE_RS21360 79ce9650b1cdc9ee4dd3594f7de19499 245 SUPERFAMILY SSF54001 42 181 4.77E-20 T 23-04-2016 RPE_RS21360 79ce9650b1cdc9ee4dd3594f7de19499 245 SMART SM00460 93 165 2.6E-4 T 23-04-2016 IPR002931 Transglutaminase-like RPE_RS21360 79ce9650b1cdc9ee4dd3594f7de19499 245 Pfam PF01841 Transglutaminase-like superfamily 50 163 2.3E-15 T 23-04-2016 IPR002931 Transglutaminase-like RPE_RS06800 b3eea40e269c977c76c4ed98fd9719b7 310 Hamap MF_00355 Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein [bchL]. 44 310 53.374 T 23-04-2016 IPR005971 Light-independent protochlorophyllide reductase, iron-sulphur ATP-binding protein GO:0005524|GO:0015995|GO:0016730|GO:0019685|GO:0046148|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RPE_RS06800 b3eea40e269c977c76c4ed98fd9719b7 310 ProSitePatterns PS00692 NifH/frxC family signature 2. 165 178 - T 23-04-2016 IPR030655 NifH/chlL conserved site RPE_RS06800 b3eea40e269c977c76c4ed98fd9719b7 310 PIRSF PIRSF000363 42 309 7.3E-103 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RPE_RS06800 b3eea40e269c977c76c4ed98fd9719b7 310 PRINTS PR00091 Nitrogenase component II signature 71 86 7.5E-32 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RPE_RS06800 b3eea40e269c977c76c4ed98fd9719b7 310 PRINTS PR00091 Nitrogenase component II signature 49 62 7.5E-32 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RPE_RS06800 b3eea40e269c977c76c4ed98fd9719b7 310 PRINTS PR00091 Nitrogenase component II signature 164 179 7.5E-32 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RPE_RS06800 b3eea40e269c977c76c4ed98fd9719b7 310 PRINTS PR00091 Nitrogenase component II signature 126 140 7.5E-32 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RPE_RS06800 b3eea40e269c977c76c4ed98fd9719b7 310 Pfam PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 46 307 2.6E-84 T 23-04-2016 RPE_RS06800 b3eea40e269c977c76c4ed98fd9719b7 310 SUPERFAMILY SSF52540 43 288 4.51E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS06800 b3eea40e269c977c76c4ed98fd9719b7 310 TIGRFAM TIGR01281 DPOR_bchL: light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein 45 308 4.6E-133 T 23-04-2016 IPR005971 Light-independent protochlorophyllide reductase, iron-sulphur ATP-binding protein GO:0005524|GO:0015995|GO:0016730|GO:0019685|GO:0046148|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RPE_RS06800 b3eea40e269c977c76c4ed98fd9719b7 310 PANTHER PTHR13696 48 285 1.0E-102 T 23-04-2016 RPE_RS06800 b3eea40e269c977c76c4ed98fd9719b7 310 PANTHER PTHR13696:SF74 48 285 1.0E-102 T 23-04-2016 RPE_RS06800 b3eea40e269c977c76c4ed98fd9719b7 310 ProSitePatterns PS00746 NifH/frxC family signature 1. 128 140 - T 23-04-2016 IPR030655 NifH/chlL conserved site RPE_RS06800 b3eea40e269c977c76c4ed98fd9719b7 310 Gene3D G3DSA:3.40.50.300 45 305 1.2E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS08725 1c64163cd6809ee470a4114ed2e8d122 902 PANTHER PTHR11117 29 712 6.2E-293 T 23-04-2016 RPE_RS08725 1c64163cd6809ee470a4114ed2e8d122 902 Gene3D G3DSA:3.40.50.720 3 130 6.5E-31 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS08725 1c64163cd6809ee470a4114ed2e8d122 902 SUPERFAMILY SSF55729 742 879 1.24E-20 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS08725 1c64163cd6809ee470a4114ed2e8d122 902 SUPERFAMILY SSF56059 490 714 3.41E-33 T 23-04-2016 RPE_RS08725 1c64163cd6809ee470a4114ed2e8d122 902 Gene3D G3DSA:3.40.50.261 131 285 4.9E-36 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RPE_RS08725 1c64163cd6809ee470a4114ed2e8d122 902 SUPERFAMILY SSF51735 2 138 1.5E-28 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS08725 1c64163cd6809ee470a4114ed2e8d122 902 PANTHER PTHR11117:SF8 29 712 6.2E-293 T 23-04-2016 RPE_RS08725 1c64163cd6809ee470a4114ed2e8d122 902 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 153 289 2.6E-57 T 23-04-2016 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain RPE_RS08725 1c64163cd6809ee470a4114ed2e8d122 902 Gene3D G3DSA:3.40.630.30 738 881 3.4E-17 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS08725 1c64163cd6809ee470a4114ed2e8d122 902 Pfam PF13302 Acetyltransferase (GNAT) domain 743 878 3.5E-8 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RPE_RS08725 1c64163cd6809ee470a4114ed2e8d122 902 Pfam PF13380 CoA binding domain 13 135 7.6E-21 T 23-04-2016 IPR003781 CoA-binding GO:0048037 RPE_RS08725 1c64163cd6809ee470a4114ed2e8d122 902 Gene3D G3DSA:3.40.50.261 286 448 1.9E-20 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RPE_RS08725 1c64163cd6809ee470a4114ed2e8d122 902 SMART SM00881 9 104 1.5E-22 T 23-04-2016 IPR003781 CoA-binding GO:0048037 RPE_RS08725 1c64163cd6809ee470a4114ed2e8d122 902 SUPERFAMILY SSF52210 295 453 6.54E-36 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RPE_RS08725 1c64163cd6809ee470a4114ed2e8d122 902 SUPERFAMILY SSF52210 130 293 8.9E-46 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RPE_RS08725 1c64163cd6809ee470a4114ed2e8d122 902 Pfam PF13549 ATP-grasp domain 483 707 1.4E-76 T 23-04-2016 RPE_RS20590 0ec1120d4c7b610d384afb8e4d34829d 256 Pfam PF09339 IclR helix-turn-helix domain 11 58 1.7E-11 T 23-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RPE_RS20590 0ec1120d4c7b610d384afb8e4d34829d 256 PANTHER PTHR30136 3 251 6.1E-65 T 23-04-2016 RPE_RS20590 0ec1120d4c7b610d384afb8e4d34829d 256 Pfam PF01614 Bacterial transcriptional regulator 125 250 2.5E-33 T 23-04-2016 IPR014757 Transcription regulator IclR, C-terminal RPE_RS20590 0ec1120d4c7b610d384afb8e4d34829d 256 SMART SM00346 9 97 1.5E-10 T 23-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RPE_RS20590 0ec1120d4c7b610d384afb8e4d34829d 256 SUPERFAMILY SSF46785 9 80 8.27E-10 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS20590 0ec1120d4c7b610d384afb8e4d34829d 256 Gene3D G3DSA:3.30.450.40 77 251 2.3E-52 T 23-04-2016 IPR029016 GAF domain-like RPE_RS20590 0ec1120d4c7b610d384afb8e4d34829d 256 PANTHER PTHR30136:SF10 3 251 6.1E-65 T 23-04-2016 RPE_RS20590 0ec1120d4c7b610d384afb8e4d34829d 256 Gene3D G3DSA:1.10.10.10 3 76 1.1E-19 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS20590 0ec1120d4c7b610d384afb8e4d34829d 256 SUPERFAMILY SSF55781 74 250 2.42E-47 T 23-04-2016 IPR029016 GAF domain-like RPE_RS22385 cb5db6d861203bb93a24d158c5442f24 163 Pfam PF06793 Uncharacterised protein family (UPF0262) 12 162 3.4E-71 T 23-04-2016 IPR008321 Uncharacterised conserved protein UCP032146 RPE_RS22385 cb5db6d861203bb93a24d158c5442f24 163 Hamap MF_00678 UPF0262 protein . 10 162 40.067 T 23-04-2016 IPR008321 Uncharacterised conserved protein UCP032146 RPE_RS22385 cb5db6d861203bb93a24d158c5442f24 163 PIRSF PIRSF032146 1 163 4.5E-81 T 23-04-2016 IPR008321 Uncharacterised conserved protein UCP032146 RPE_RS18410 be8590d1c70e4003b9bb90e7bcdaa12b 368 PANTHER PTHR23321:SF19 81 262 2.2E-22 T 23-04-2016 RPE_RS18410 be8590d1c70e4003b9bb90e7bcdaa12b 368 Pfam PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain 117 346 1.2E-27 T 23-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RPE_RS18410 be8590d1c70e4003b9bb90e7bcdaa12b 368 Gene3D G3DSA:3.30.70.150 5 110 2.0E-4 T 23-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RPE_RS18410 be8590d1c70e4003b9bb90e7bcdaa12b 368 SUPERFAMILY SSF51649 111 347 2.75E-63 T 23-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RPE_RS18410 be8590d1c70e4003b9bb90e7bcdaa12b 368 Gene3D G3DSA:3.20.20.110 112 362 2.2E-52 T 23-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RPE_RS18410 be8590d1c70e4003b9bb90e7bcdaa12b 368 PANTHER PTHR23321 81 262 2.2E-22 T 23-04-2016 RPE_RS18410 be8590d1c70e4003b9bb90e7bcdaa12b 368 SUPERFAMILY SSF54966 3 112 9.82E-14 T 23-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RPE_RS17895 caf5b8096bae2b90e862401f5af95f10 132 SUPERFAMILY SSF56047 3 132 1.14E-43 T 23-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 RPE_RS17895 caf5b8096bae2b90e862401f5af95f10 132 Gene3D G3DSA:3.30.1370.30 3 73 3.7E-23 T 23-04-2016 RPE_RS17895 caf5b8096bae2b90e862401f5af95f10 132 PANTHER PTHR11758 1 132 4.0E-53 T 23-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 RPE_RS17895 caf5b8096bae2b90e862401f5af95f10 132 Pfam PF00410 Ribosomal protein S8 5 132 3.1E-47 T 23-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 RPE_RS17895 caf5b8096bae2b90e862401f5af95f10 132 Gene3D G3DSA:3.30.1490.10 76 132 6.6E-27 T 23-04-2016 RPE_RS17895 caf5b8096bae2b90e862401f5af95f10 132 ProSitePatterns PS00053 Ribosomal protein S8 signature. 102 119 - T 23-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 RPE_RS17895 caf5b8096bae2b90e862401f5af95f10 132 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 132 29.862 T 23-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 RPE_RS09935 c954820013d627952941a50289a7f986 289 SUPERFAMILY SSF48179 165 288 8.62E-39 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RPE_RS09935 c954820013d627952941a50289a7f986 289 Gene3D G3DSA:3.40.50.720 1 160 1.4E-48 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS09935 c954820013d627952941a50289a7f986 289 PANTHER PTHR22981 1 289 4.8E-161 T 23-04-2016 RPE_RS09935 c954820013d627952941a50289a7f986 289 Gene3D G3DSA:1.10.1040.10 167 288 5.5E-39 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RPE_RS09935 c954820013d627952941a50289a7f986 289 PIRSF PIRSF000103 1 289 2.1E-65 T 23-04-2016 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 RPE_RS09935 c954820013d627952941a50289a7f986 289 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 160 1.8E-44 T 23-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 RPE_RS09935 c954820013d627952941a50289a7f986 289 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 167 285 1.1E-33 T 23-04-2016 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 RPE_RS09935 c954820013d627952941a50289a7f986 289 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 6 19 - T 23-04-2016 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 RPE_RS09935 c954820013d627952941a50289a7f986 289 SUPERFAMILY SSF51735 2 165 1.23E-46 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS09935 c954820013d627952941a50289a7f986 289 PANTHER PTHR22981:SF49 1 289 4.8E-161 T 23-04-2016 RPE_RS18585 e3c0bc7d8adc681911997597ce7775e1 269 PANTHER PTHR10000 4 266 7.2E-64 T 23-04-2016 RPE_RS18585 e3c0bc7d8adc681911997597ce7775e1 269 ProSitePatterns PS01228 Hypothetical cof family signature 1. 6 17 - T 23-04-2016 IPR000150 Cof protein GO:0016787 RPE_RS18585 e3c0bc7d8adc681911997597ce7775e1 269 PANTHER PTHR10000:SF8 4 266 7.2E-64 T 23-04-2016 RPE_RS18585 e3c0bc7d8adc681911997597ce7775e1 269 Gene3D G3DSA:3.40.50.1000 180 265 7.3E-44 T 23-04-2016 IPR023214 HAD-like domain RPE_RS18585 e3c0bc7d8adc681911997597ce7775e1 269 Gene3D G3DSA:3.40.50.1000 3 74 7.3E-44 T 23-04-2016 IPR023214 HAD-like domain RPE_RS18585 e3c0bc7d8adc681911997597ce7775e1 269 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 6 233 1.6E-21 T 23-04-2016 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: REACT_17015 RPE_RS18585 e3c0bc7d8adc681911997597ce7775e1 269 SUPERFAMILY SSF56784 3 261 6.09E-62 T 23-04-2016 IPR023214 HAD-like domain RPE_RS18585 e3c0bc7d8adc681911997597ce7775e1 269 Pfam PF08282 haloacid dehalogenase-like hydrolase 7 259 1.2E-58 T 23-04-2016 IPR023214 HAD-like domain RPE_RS18585 e3c0bc7d8adc681911997597ce7775e1 269 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 6 259 2.5E-47 T 23-04-2016 IPR000150 Cof protein GO:0016787 RPE_RS18585 e3c0bc7d8adc681911997597ce7775e1 269 Gene3D G3DSA:3.30.1240.10 86 179 3.5E-9 T 23-04-2016 RPE_RS04765 c7203155bd5da8d3ce7d16ec9eaa353b 210 PANTHER PTHR11228:SF6 1 189 6.7E-30 T 23-04-2016 RPE_RS04765 c7203155bd5da8d3ce7d16ec9eaa353b 210 PANTHER PTHR11228 1 189 6.7E-30 T 23-04-2016 RPE_RS04765 c7203155bd5da8d3ce7d16ec9eaa353b 210 PIRSF PIRSF000370 1 210 4.9E-37 T 23-04-2016 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703|UniPathway: UPA00391 RPE_RS04765 c7203155bd5da8d3ce7d16ec9eaa353b 210 Pfam PF04055 Radical SAM superfamily 45 127 4.2E-7 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RPE_RS04765 c7203155bd5da8d3ce7d16ec9eaa353b 210 SUPERFAMILY SSF102114 45 130 2.35E-8 T 23-04-2016 RPE_RS04765 c7203155bd5da8d3ce7d16ec9eaa353b 210 TIGRFAM TIGR04508 queE_Cx14CxxC: 7-carboxy-7-deazaguanine synthase 3 210 5.8E-108 T 23-04-2016 IPR030977 7-carboxy-7-deazaguanine synthase, Cx14CxxC-type GO:0008616|GO:0046872 KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703|UniPathway: UPA00391 RPE_RS04765 c7203155bd5da8d3ce7d16ec9eaa353b 210 Pfam PF13394 4Fe-4S single cluster domain 44 122 7.0E-6 T 23-04-2016 RPE_RS04765 c7203155bd5da8d3ce7d16ec9eaa353b 210 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 3 210 32.889 T 23-04-2016 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703|UniPathway: UPA00391 RPE_RS04765 c7203155bd5da8d3ce7d16ec9eaa353b 210 Gene3D G3DSA:3.20.20.70 45 129 3.1E-8 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS13865 85557ee0cd1cdd76eb40fdc104a3103a 285 Gene3D G3DSA:3.20.10.10 128 280 2.5E-45 T 23-04-2016 RPE_RS13865 85557ee0cd1cdd76eb40fdc104a3103a 285 PANTHER PTHR11825 4 278 1.2E-97 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RPE_RS13865 85557ee0cd1cdd76eb40fdc104a3103a 285 PANTHER PTHR11825:SF38 4 278 1.2E-97 T 23-04-2016 RPE_RS13865 85557ee0cd1cdd76eb40fdc104a3103a 285 Pfam PF01063 Amino-transferase class IV 31 255 1.8E-46 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RPE_RS13865 85557ee0cd1cdd76eb40fdc104a3103a 285 SUPERFAMILY SSF56752 3 280 1.83E-73 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RPE_RS13865 85557ee0cd1cdd76eb40fdc104a3103a 285 Gene3D G3DSA:3.30.470.10 4 120 5.8E-32 T 23-04-2016 RPE_RS09235 242c495a14f275c38bfe1595bf8a77fc 783 Gene3D G3DSA:3.30.70.270 346 511 1.8E-57 T 23-04-2016 RPE_RS09235 242c495a14f275c38bfe1595bf8a77fc 783 SMART SM00052 515 763 1.3E-99 T 23-04-2016 IPR001633 EAL domain RPE_RS09235 242c495a14f275c38bfe1595bf8a77fc 783 PANTHER PTHR10799 253 616 2.3E-73 T 23-04-2016 RPE_RS09235 242c495a14f275c38bfe1595bf8a77fc 783 SMART SM00267 334 505 1.2E-67 T 23-04-2016 IPR000160 GGDEF domain RPE_RS09235 242c495a14f275c38bfe1595bf8a77fc 783 Pfam PF00563 EAL domain 521 758 2.1E-72 T 23-04-2016 IPR001633 EAL domain RPE_RS09235 242c495a14f275c38bfe1595bf8a77fc 783 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 243 341 3.4E-7 T 23-04-2016 IPR000014 PAS domain RPE_RS09235 242c495a14f275c38bfe1595bf8a77fc 783 Gene3D G3DSA:3.20.20.450 519 768 1.4E-90 T 23-04-2016 IPR001633 EAL domain RPE_RS09235 242c495a14f275c38bfe1595bf8a77fc 783 PANTHER PTHR10799:SF774 253 616 2.3E-73 T 23-04-2016 RPE_RS09235 242c495a14f275c38bfe1595bf8a77fc 783 Pfam PF00990 Diguanylate cyclase, GGDEF domain 345 500 1.0E-45 T 23-04-2016 IPR000160 GGDEF domain RPE_RS09235 242c495a14f275c38bfe1595bf8a77fc 783 SUPERFAMILY SSF55785 240 343 3.32E-13 T 23-04-2016 IPR000014 PAS domain RPE_RS09235 242c495a14f275c38bfe1595bf8a77fc 783 SUPERFAMILY SSF55073 350 507 2.35E-49 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS09235 242c495a14f275c38bfe1595bf8a77fc 783 SUPERFAMILY SSF141868 522 770 1.57E-81 T 23-04-2016 IPR001633 EAL domain RPE_RS09235 242c495a14f275c38bfe1595bf8a77fc 783 Pfam PF08447 PAS fold 241 328 2.1E-6 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 RPE_RS09235 242c495a14f275c38bfe1595bf8a77fc 783 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 341 501 1.5E-41 T 23-04-2016 IPR000160 GGDEF domain RPE_RS09235 242c495a14f275c38bfe1595bf8a77fc 783 Gene3D G3DSA:3.30.450.20 213 332 5.6E-12 T 23-04-2016 RPE_RS09235 242c495a14f275c38bfe1595bf8a77fc 783 SMART SM00086 292 334 0.002 T 23-04-2016 IPR001610 PAC motif RPE_RS17920 1e76b356305e3bd7988a3931bf3a1144 82 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 3 74 3.7E-34 T 23-04-2016 IPR019984 Ribosomal protein S17, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17920 1e76b356305e3bd7988a3931bf3a1144 82 Gene3D G3DSA:2.40.50.140 1 79 6.5E-33 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS17920 1e76b356305e3bd7988a3931bf3a1144 82 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 1 74 2.0E-37 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17920 1e76b356305e3bd7988a3931bf3a1144 82 PRINTS PR00973 Ribosomal protein S17 family signature 54 64 3.1E-11 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17920 1e76b356305e3bd7988a3931bf3a1144 82 PRINTS PR00973 Ribosomal protein S17 family signature 22 45 3.1E-11 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17920 1e76b356305e3bd7988a3931bf3a1144 82 PRINTS PR00973 Ribosomal protein S17 family signature 64 71 3.1E-11 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17920 1e76b356305e3bd7988a3931bf3a1144 82 Pfam PF00366 Ribosomal protein S17 8 74 1.1E-31 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17920 1e76b356305e3bd7988a3931bf3a1144 82 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 1 79 23.671 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17920 1e76b356305e3bd7988a3931bf3a1144 82 PANTHER PTHR10744 1 75 1.4E-35 T 23-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17920 1e76b356305e3bd7988a3931bf3a1144 82 SUPERFAMILY SSF50249 3 77 1.88E-30 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS17920 1e76b356305e3bd7988a3931bf3a1144 82 ProSitePatterns PS00056 Ribosomal protein S17 signature. 54 66 - T 23-04-2016 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS00805 48145a5119f5315863d745c7f6dafb06 359 PANTHER PTHR11075:SF9 6 357 9.4E-175 T 23-04-2016 RPE_RS00805 48145a5119f5315863d745c7f6dafb06 359 Gene3D G3DSA:1.20.58.410 8 93 1.0E-8 T 23-04-2016 RPE_RS00805 48145a5119f5315863d745c7f6dafb06 359 PANTHER PTHR11075 6 357 9.4E-175 T 23-04-2016 RPE_RS00805 48145a5119f5315863d745c7f6dafb06 359 Gene3D G3DSA:3.30.160.20 211 285 7.5E-35 T 23-04-2016 IPR014720 Double-stranded RNA-binding domain RPE_RS00805 48145a5119f5315863d745c7f6dafb06 359 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 8 355 4.8E-146 T 23-04-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 RPE_RS00805 48145a5119f5315863d745c7f6dafb06 359 Pfam PF03462 PCRF domain 14 204 1.5E-64 T 23-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 RPE_RS00805 48145a5119f5315863d745c7f6dafb06 359 SUPERFAMILY SSF75620 15 354 1.31E-123 T 23-04-2016 RPE_RS00805 48145a5119f5315863d745c7f6dafb06 359 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 228 244 - T 23-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RPE_RS00805 48145a5119f5315863d745c7f6dafb06 359 SMART SM00937 64 179 6.5E-58 T 23-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 RPE_RS00805 48145a5119f5315863d745c7f6dafb06 359 Pfam PF00472 RF-1 domain 212 321 6.5E-43 T 23-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RPE_RS00805 48145a5119f5315863d745c7f6dafb06 359 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 358 38.458 T 23-04-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 RPE_RS15765 d184670f5df72331b7d0599e5a2fb4f8 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 7.5E-8 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS15765 d184670f5df72331b7d0599e5a2fb4f8 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 7.5E-8 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS15765 d184670f5df72331b7d0599e5a2fb4f8 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 7.5E-8 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS15765 d184670f5df72331b7d0599e5a2fb4f8 218 PANTHER PTHR26402 2 204 3.8E-48 T 23-04-2016 RPE_RS15765 d184670f5df72331b7d0599e5a2fb4f8 218 PANTHER PTHR26402:SF151 2 204 3.8E-48 T 23-04-2016 RPE_RS15765 d184670f5df72331b7d0599e5a2fb4f8 218 Gene3D G3DSA:3.40.50.2300 1 121 1.7E-30 T 23-04-2016 RPE_RS15765 d184670f5df72331b7d0599e5a2fb4f8 218 SMART SM00421 146 203 7.9E-15 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS15765 d184670f5df72331b7d0599e5a2fb4f8 218 SMART SM00448 2 116 1.5E-27 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS15765 d184670f5df72331b7d0599e5a2fb4f8 218 Gene3D G3DSA:1.10.10.10 122 206 1.2E-18 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS15765 d184670f5df72331b7d0599e5a2fb4f8 218 SUPERFAMILY SSF52172 1 130 7.12E-28 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS15765 d184670f5df72331b7d0599e5a2fb4f8 218 Pfam PF00072 Response regulator receiver domain 4 117 5.5E-24 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS15765 d184670f5df72331b7d0599e5a2fb4f8 218 SUPERFAMILY SSF46894 139 205 1.05E-14 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RPE_RS15765 d184670f5df72331b7d0599e5a2fb4f8 218 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 203 9.5E-13 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS16495 a4ee9ce179699fb0219917612961df8e 621 Pfam PF12848 ABC transporter 214 297 2.1E-24 T 23-04-2016 IPR032781 ABC-transporter extension domain RPE_RS16495 a4ee9ce179699fb0219917612961df8e 621 SMART SM00382 336 504 6.0E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS16495 a4ee9ce179699fb0219917612961df8e 621 SMART SM00382 26 220 1.5E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS16495 a4ee9ce179699fb0219917612961df8e 621 Pfam PF00005 ABC transporter 327 458 3.9E-18 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS16495 a4ee9ce179699fb0219917612961df8e 621 Pfam PF00005 ABC transporter 18 175 3.5E-21 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS16495 a4ee9ce179699fb0219917612961df8e 621 SUPERFAMILY SSF52540 2 241 5.62E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16495 a4ee9ce179699fb0219917612961df8e 621 SUPERFAMILY SSF52540 295 509 1.1E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16495 a4ee9ce179699fb0219917612961df8e 621 ProSitePatterns PS00211 ABC transporters family signature. 430 444 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS16495 a4ee9ce179699fb0219917612961df8e 621 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS16495 a4ee9ce179699fb0219917612961df8e 621 Gene3D G3DSA:3.40.50.300 308 516 9.0E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16495 a4ee9ce179699fb0219917612961df8e 621 Gene3D G3DSA:3.40.50.300 1 263 9.6E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16495 a4ee9ce179699fb0219917612961df8e 621 PANTHER PTHR19211 1 557 2.1E-241 T 23-04-2016 RPE_RS12735 45f290b39a93ec246a0ef8ed439703c5 556 SUPERFAMILY SSF56281 8 425 1.83E-81 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS12735 45f290b39a93ec246a0ef8ed439703c5 556 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 356 410 3.0E-8 T 23-04-2016 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain RPE_RS12735 45f290b39a93ec246a0ef8ed439703c5 556 Gene3D G3DSA:3.60.15.10 5 260 4.4E-68 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS12735 45f290b39a93ec246a0ef8ed439703c5 556 PANTHER PTHR11203:SF22 1 556 2.8E-180 T 23-04-2016 IPR004613 Ribonuclease J GO:0003723|GO:0046872 RPE_RS12735 45f290b39a93ec246a0ef8ed439703c5 556 SMART SM00849 21 219 1.8E-15 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS12735 45f290b39a93ec246a0ef8ed439703c5 556 PANTHER PTHR11203 1 556 2.8E-180 T 23-04-2016 RPE_RS12735 45f290b39a93ec246a0ef8ed439703c5 556 Pfam PF12706 Beta-lactamase superfamily domain 66 167 5.2E-8 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS15405 9d0a80441ac5e425abbfe02a10aea50e 419 SUPERFAMILY SSF51905 271 346 4.52E-24 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS15405 9d0a80441ac5e425abbfe02a10aea50e 419 SUPERFAMILY SSF51905 30 134 4.52E-24 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS15405 9d0a80441ac5e425abbfe02a10aea50e 419 Pfam PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding 352 418 6.0E-21 T 23-04-2016 IPR015323 Flavocytochrome c sulphide dehydrogenase, flavin-binding GO:0016491|GO:0050660|GO:0055114 KEGG: 00920+1.8.2.3|MetaCyc: PWY-5274 RPE_RS15405 9d0a80441ac5e425abbfe02a10aea50e 419 PANTHER PTHR10632 12 376 1.9E-91 T 23-04-2016 RPE_RS15405 9d0a80441ac5e425abbfe02a10aea50e 419 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 30 145 2.3E-11 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS15405 9d0a80441ac5e425abbfe02a10aea50e 419 Gene3D G3DSA:3.50.50.60 144 277 1.4E-54 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS15405 9d0a80441ac5e425abbfe02a10aea50e 419 SUPERFAMILY SSF51905 141 276 2.78E-35 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS15405 9d0a80441ac5e425abbfe02a10aea50e 419 PANTHER PTHR10632:SF10 12 376 1.9E-91 T 23-04-2016 RPE_RS15405 9d0a80441ac5e425abbfe02a10aea50e 419 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 31 50 4.3E-5 T 23-04-2016 RPE_RS15405 9d0a80441ac5e425abbfe02a10aea50e 419 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 123 141 4.3E-5 T 23-04-2016 RPE_RS15405 9d0a80441ac5e425abbfe02a10aea50e 419 SUPERFAMILY SSF55424 351 419 5.49E-19 T 23-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 RPE_RS15405 9d0a80441ac5e425abbfe02a10aea50e 419 Gene3D G3DSA:3.90.760.10 351 419 2.5E-22 T 23-04-2016 IPR015323 Flavocytochrome c sulphide dehydrogenase, flavin-binding GO:0016491|GO:0050660|GO:0055114 KEGG: 00920+1.8.2.3|MetaCyc: PWY-5274 RPE_RS15405 9d0a80441ac5e425abbfe02a10aea50e 419 Gene3D G3DSA:3.50.50.60 28 142 3.3E-41 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS15405 9d0a80441ac5e425abbfe02a10aea50e 419 Gene3D G3DSA:3.50.50.60 278 347 3.3E-41 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS03150 89e7e6e38ca8a134ef9ee0ba1cf0bea7 765 SUPERFAMILY SSF55781 134 313 2.4E-60 T 23-04-2016 IPR029016 GAF domain-like RPE_RS03150 89e7e6e38ca8a134ef9ee0ba1cf0bea7 765 PANTHER PTHR24423 47 753 5.8E-124 T 23-04-2016 RPE_RS03150 89e7e6e38ca8a134ef9ee0ba1cf0bea7 765 PANTHER PTHR24423:SF518 47 753 5.8E-124 T 23-04-2016 RPE_RS03150 89e7e6e38ca8a134ef9ee0ba1cf0bea7 765 SUPERFAMILY SSF55781 300 504 2.55E-48 T 23-04-2016 IPR029016 GAF domain-like RPE_RS03150 89e7e6e38ca8a134ef9ee0ba1cf0bea7 765 Pfam PF00512 His Kinase A (phospho-acceptor) domain 524 589 1.9E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS03150 89e7e6e38ca8a134ef9ee0ba1cf0bea7 765 Gene3D G3DSA:3.30.450.40 140 319 1.7E-11 T 23-04-2016 IPR029016 GAF domain-like RPE_RS03150 89e7e6e38ca8a134ef9ee0ba1cf0bea7 765 SMART SM00065 148 326 2.6E-9 T 23-04-2016 IPR003018 GAF domain GO:0005515 RPE_RS03150 89e7e6e38ca8a134ef9ee0ba1cf0bea7 765 Pfam PF01590 GAF domain 149 314 1.9E-18 T 23-04-2016 IPR003018 GAF domain GO:0005515 RPE_RS03150 89e7e6e38ca8a134ef9ee0ba1cf0bea7 765 SMART SM00387 632 753 2.8E-34 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS03150 89e7e6e38ca8a134ef9ee0ba1cf0bea7 765 Pfam PF00360 Phytochrome region 329 507 2.4E-55 T 23-04-2016 IPR013515 Phytochrome, central region GO:0006355|GO:0009584|GO:0018298 RPE_RS03150 89e7e6e38ca8a134ef9ee0ba1cf0bea7 765 Gene3D G3DSA:3.30.565.10 599 754 1.4E-41 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS03150 89e7e6e38ca8a134ef9ee0ba1cf0bea7 765 Pfam PF08446 PAS fold 16 121 4.9E-18 T 23-04-2016 IPR013654 PAS fold-2 GO:0006355 RPE_RS03150 89e7e6e38ca8a134ef9ee0ba1cf0bea7 765 SMART SM00388 523 591 1.1E-5 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS03150 89e7e6e38ca8a134ef9ee0ba1cf0bea7 765 Gene3D G3DSA:1.10.287.130 516 586 6.9E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS03150 89e7e6e38ca8a134ef9ee0ba1cf0bea7 765 SUPERFAMILY SSF55874 599 750 1.83E-38 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS03150 89e7e6e38ca8a134ef9ee0ba1cf0bea7 765 SUPERFAMILY SSF55785 6 121 1.67E-29 T 23-04-2016 IPR000014 PAS domain RPE_RS03150 89e7e6e38ca8a134ef9ee0ba1cf0bea7 765 SUPERFAMILY SSF47384 509 589 2.55E-13 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS03150 89e7e6e38ca8a134ef9ee0ba1cf0bea7 765 PRINTS PR00344 Bacterial sensor protein C-terminal signature 737 750 3.1E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS03150 89e7e6e38ca8a134ef9ee0ba1cf0bea7 765 PRINTS PR00344 Bacterial sensor protein C-terminal signature 698 708 3.1E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS03150 89e7e6e38ca8a134ef9ee0ba1cf0bea7 765 PRINTS PR00344 Bacterial sensor protein C-terminal signature 680 694 3.1E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS03150 89e7e6e38ca8a134ef9ee0ba1cf0bea7 765 PRINTS PR00344 Bacterial sensor protein C-terminal signature 713 731 3.1E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS03150 89e7e6e38ca8a134ef9ee0ba1cf0bea7 765 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 633 752 3.5E-23 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS08165 e15ec1a75b20303cdadd3ca3c3ff5118 422 PANTHER PTHR22935 31 421 7.7E-107 T 23-04-2016 RPE_RS08165 e15ec1a75b20303cdadd3ca3c3ff5118 422 Pfam PF00144 Beta-lactamase 46 406 2.2E-66 T 23-04-2016 IPR001466 Beta-lactamase-related RPE_RS08165 e15ec1a75b20303cdadd3ca3c3ff5118 422 PANTHER PTHR22935:SF77 31 421 7.7E-107 T 23-04-2016 RPE_RS08165 e15ec1a75b20303cdadd3ca3c3ff5118 422 SUPERFAMILY SSF56601 39 405 9.39E-93 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS08165 e15ec1a75b20303cdadd3ca3c3ff5118 422 Gene3D G3DSA:3.40.710.10 33 403 1.3E-86 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS20575 da7d266ff22e8781dc62cba7ee191ba5 321 PIRSF PIRSF017082 1 320 1.5E-77 T 23-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RPE_RS20575 da7d266ff22e8781dc62cba7ee191ba5 321 Gene3D G3DSA:3.20.20.70 136 284 6.2E-5 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS20575 da7d266ff22e8781dc62cba7ee191ba5 321 SUPERFAMILY SSF53850 107 280 8.07E-13 T 23-04-2016 RPE_RS20575 da7d266ff22e8781dc62cba7ee191ba5 321 PANTHER PTHR30349:SF16 4 277 3.3E-91 T 23-04-2016 RPE_RS20575 da7d266ff22e8781dc62cba7ee191ba5 321 PANTHER PTHR30349 4 277 3.3E-91 T 23-04-2016 RPE_RS20575 da7d266ff22e8781dc62cba7ee191ba5 321 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 45 316 1.6E-82 T 23-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RPE_RS05940 45e8b4a3737fc13732ce459b983766f6 411 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 335 409 5.5E-16 T 23-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RPE_RS05940 45e8b4a3737fc13732ce459b983766f6 411 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 6 392 1.8E-92 T 23-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G RPE_RS05940 45e8b4a3737fc13732ce459b983766f6 411 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 23-04-2016 IPR019776 Flagellar basal body rod protein, conserved site RPE_RS05940 45e8b4a3737fc13732ce459b983766f6 411 SUPERFAMILY SSF117143 81 371 2.09E-62 T 23-04-2016 RPE_RS05940 45e8b4a3737fc13732ce459b983766f6 411 Pfam PF07559 Flagellar basal body protein FlaE 178 290 7.1E-11 T 23-04-2016 IPR011491 Flagellar hook protein FlgE RPE_RS05940 45e8b4a3737fc13732ce459b983766f6 411 Pfam PF00460 Flagella basal body rod protein 7 37 1.4E-12 T 23-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RPE_RS05940 45e8b4a3737fc13732ce459b983766f6 411 PANTHER PTHR30435 288 411 9.8E-60 T 23-04-2016 RPE_RS05940 45e8b4a3737fc13732ce459b983766f6 411 PANTHER PTHR30435 2 125 9.8E-60 T 23-04-2016 RPE_RS05940 45e8b4a3737fc13732ce459b983766f6 411 PANTHER PTHR30435:SF1 288 411 9.8E-60 T 23-04-2016 RPE_RS05940 45e8b4a3737fc13732ce459b983766f6 411 PANTHER PTHR30435:SF1 2 125 9.8E-60 T 23-04-2016 RPE_RS02775 d375667236dc3a8d379e37b5de1af751 198 PANTHER PTHR23091:SF190 18 161 1.2E-39 T 23-04-2016 RPE_RS02775 d375667236dc3a8d379e37b5de1af751 198 Gene3D G3DSA:3.40.630.30 15 184 2.7E-43 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS02775 d375667236dc3a8d379e37b5de1af751 198 SUPERFAMILY SSF55729 16 166 4.33E-39 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS02775 d375667236dc3a8d379e37b5de1af751 198 PANTHER PTHR23091 18 161 1.2E-39 T 23-04-2016 RPE_RS02775 d375667236dc3a8d379e37b5de1af751 198 Pfam PF13302 Acetyltransferase (GNAT) domain 22 156 5.5E-30 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RPE_RS09170 6c0fe00e040c3f92608b0a669527d84e 539 Gene3D G3DSA:3.50.50.60 471 537 2.8E-116 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS09170 6c0fe00e040c3f92608b0a669527d84e 539 Gene3D G3DSA:3.50.50.60 6 130 2.8E-116 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS09170 6c0fe00e040c3f92608b0a669527d84e 539 Gene3D G3DSA:3.50.50.60 191 317 2.8E-116 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS09170 6c0fe00e040c3f92608b0a669527d84e 539 SUPERFAMILY SSF51905 474 537 1.94E-84 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS09170 6c0fe00e040c3f92608b0a669527d84e 539 SUPERFAMILY SSF51905 8 287 1.94E-84 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS09170 6c0fe00e040c3f92608b0a669527d84e 539 SUPERFAMILY SSF54373 294 478 6.87E-53 T 23-04-2016 RPE_RS09170 6c0fe00e040c3f92608b0a669527d84e 539 Pfam PF05199 GMC oxidoreductase 391 529 2.9E-35 T 23-04-2016 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 RPE_RS09170 6c0fe00e040c3f92608b0a669527d84e 539 PANTHER PTHR11552 4 537 6.7E-214 T 23-04-2016 RPE_RS09170 6c0fe00e040c3f92608b0a669527d84e 539 PANTHER PTHR11552:SF51 4 537 6.7E-214 T 23-04-2016 RPE_RS09170 6c0fe00e040c3f92608b0a669527d84e 539 PIRSF PIRSF000137 2 539 1.0E-138 T 23-04-2016 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|UniPathway: UPA00529 RPE_RS09170 6c0fe00e040c3f92608b0a669527d84e 539 Pfam PF00732 GMC oxidoreductase 9 299 3.8E-81 T 23-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 RPE_RS06640 cf2e2e82fde1f10a072549572c3de204 510 PANTHER PTHR10668:SF4 19 503 3.4E-111 T 23-04-2016 RPE_RS06640 cf2e2e82fde1f10a072549572c3de204 510 PANTHER PTHR10668 19 503 3.4E-111 T 23-04-2016 RPE_RS06640 cf2e2e82fde1f10a072549572c3de204 510 ProSitePatterns PS00982 Bacterial-type phytoene dehydrogenase signature. 473 493 - T 23-04-2016 IPR008150 Phytoene dehydrogenase, bacterial-type, conserved site RPE_RS06640 cf2e2e82fde1f10a072549572c3de204 510 Gene3D G3DSA:3.50.50.60 16 120 1.4E-36 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS06640 cf2e2e82fde1f10a072549572c3de204 510 Gene3D G3DSA:3.50.50.60 225 370 1.4E-36 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS06640 cf2e2e82fde1f10a072549572c3de204 510 Pfam PF01593 Flavin containing amine oxidoreductase 27 495 5.8E-35 T 23-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 RPE_RS06640 cf2e2e82fde1f10a072549572c3de204 510 SUPERFAMILY SSF51905 15 332 3.18E-74 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS06640 cf2e2e82fde1f10a072549572c3de204 510 SUPERFAMILY SSF51905 463 495 3.18E-74 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS06640 cf2e2e82fde1f10a072549572c3de204 510 TIGRFAM TIGR02734 crtI_fam: phytoene desaturase 19 504 1.8E-190 T 23-04-2016 IPR014105 Carotenoid/retinoid oxidoreductase GO:0016117|GO:0055114 RPE_RS22940 2c8e12f98ba87a0488c22be28a1ff2d8 322 SUPERFAMILY SSF49493 221 298 1.01E-19 T 23-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RPE_RS22940 2c8e12f98ba87a0488c22be28a1ff2d8 322 Pfam PF00226 DnaJ domain 3 65 4.0E-23 T 23-04-2016 IPR001623 DnaJ domain RPE_RS22940 2c8e12f98ba87a0488c22be28a1ff2d8 322 SUPERFAMILY SSF49493 150 222 1.11E-17 T 23-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RPE_RS22940 2c8e12f98ba87a0488c22be28a1ff2d8 322 PRINTS PR00625 DnaJ domain signature 40 60 1.9E-16 T 23-04-2016 IPR001623 DnaJ domain RPE_RS22940 2c8e12f98ba87a0488c22be28a1ff2d8 322 PRINTS PR00625 DnaJ domain signature 23 38 1.9E-16 T 23-04-2016 IPR001623 DnaJ domain RPE_RS22940 2c8e12f98ba87a0488c22be28a1ff2d8 322 PRINTS PR00625 DnaJ domain signature 5 23 1.9E-16 T 23-04-2016 IPR001623 DnaJ domain RPE_RS22940 2c8e12f98ba87a0488c22be28a1ff2d8 322 SMART SM00271 2 60 1.9E-26 T 23-04-2016 IPR001623 DnaJ domain RPE_RS22940 2c8e12f98ba87a0488c22be28a1ff2d8 322 Gene3D G3DSA:1.10.287.110 104 128 2.0E-26 T 23-04-2016 IPR001623 DnaJ domain RPE_RS22940 2c8e12f98ba87a0488c22be28a1ff2d8 322 Gene3D G3DSA:1.10.287.110 1 70 2.0E-26 T 23-04-2016 IPR001623 DnaJ domain RPE_RS22940 2c8e12f98ba87a0488c22be28a1ff2d8 322 Gene3D G3DSA:2.60.260.20 219 296 7.1E-21 T 23-04-2016 RPE_RS22940 2c8e12f98ba87a0488c22be28a1ff2d8 322 Gene3D G3DSA:2.60.260.20 147 216 1.3E-18 T 23-04-2016 RPE_RS22940 2c8e12f98ba87a0488c22be28a1ff2d8 322 Pfam PF01556 DnaJ C terminal domain 153 295 4.2E-39 T 23-04-2016 IPR002939 Chaperone DnaJ, C-terminal RPE_RS22940 2c8e12f98ba87a0488c22be28a1ff2d8 322 PANTHER PTHR24078 135 296 1.2E-66 T 23-04-2016 RPE_RS22940 2c8e12f98ba87a0488c22be28a1ff2d8 322 PANTHER PTHR24078 1 117 1.2E-66 T 23-04-2016 RPE_RS22940 2c8e12f98ba87a0488c22be28a1ff2d8 322 SUPERFAMILY SSF46565 1 104 6.93E-25 T 23-04-2016 IPR001623 DnaJ domain RPE_RS13310 ac092eeebf6ededc50ce0dc33944941d 239 Pfam PF07660 Secretin and TonB N terminus short domain 58 107 4.5E-7 T 23-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 RPE_RS13310 ac092eeebf6ededc50ce0dc33944941d 239 SMART SM00965 57 108 4.9E-11 T 23-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 RPE_RS13310 ac092eeebf6ededc50ce0dc33944941d 239 SUPERFAMILY SSF74653 113 211 2.55E-7 T 23-04-2016 RPE_RS13310 ac092eeebf6ededc50ce0dc33944941d 239 Gene3D G3DSA:3.30.1150.10 135 212 1.9E-7 T 23-04-2016 RPE_RS03065 daec91559c3fa9c7f50728f5926cbd0d 547 Gene3D G3DSA:3.30.300.30 442 542 1.2E-27 T 23-04-2016 RPE_RS03065 daec91559c3fa9c7f50728f5926cbd0d 547 TIGRFAM TIGR03208 cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase 3 540 0.0 T 23-04-2016 IPR017621 Cyclohexanecarboxylate-CoA ligase RPE_RS03065 daec91559c3fa9c7f50728f5926cbd0d 547 Pfam PF13193 AMP-binding enzyme C-terminal domain 456 532 1.6E-12 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RPE_RS03065 daec91559c3fa9c7f50728f5926cbd0d 547 Gene3D G3DSA:3.40.50.980 208 360 1.4E-35 T 23-04-2016 RPE_RS03065 daec91559c3fa9c7f50728f5926cbd0d 547 Gene3D G3DSA:3.40.50.980 24 207 1.6E-35 T 23-04-2016 RPE_RS03065 daec91559c3fa9c7f50728f5926cbd0d 547 ProSitePatterns PS00455 Putative AMP-binding domain signature. 202 213 - T 23-04-2016 IPR020845 AMP-binding, conserved site RPE_RS03065 daec91559c3fa9c7f50728f5926cbd0d 547 SUPERFAMILY SSF56801 23 543 7.2E-139 T 23-04-2016 RPE_RS03065 daec91559c3fa9c7f50728f5926cbd0d 547 Gene3D G3DSA:2.30.38.10 369 441 6.5E-21 T 23-04-2016 RPE_RS03065 daec91559c3fa9c7f50728f5926cbd0d 547 Pfam PF00501 AMP-binding enzyme 34 447 1.3E-92 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS03065 daec91559c3fa9c7f50728f5926cbd0d 547 PANTHER PTHR24095 25 544 1.2E-130 T 23-04-2016 RPE_RS08250 1e1a321e53ab78a59aac4bfff4398617 175 Gene3D G3DSA:3.40.630.30 42 150 1.8E-11 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS08250 1e1a321e53ab78a59aac4bfff4398617 175 SUPERFAMILY SSF55729 36 150 3.84E-11 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS08250 1e1a321e53ab78a59aac4bfff4398617 175 Pfam PF00583 Acetyltransferase (GNAT) family 58 150 2.6E-6 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RPE_RS08250 1e1a321e53ab78a59aac4bfff4398617 175 PANTHER PTHR36449 7 175 3.5E-40 T 23-04-2016 RPE_RS23270 9066ddad3d7f3d19f36504db3075e533 443 Pfam PF00512 His Kinase A (phospho-acceptor) domain 230 286 3.5E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS23270 9066ddad3d7f3d19f36504db3075e533 443 SUPERFAMILY SSF55874 282 434 2.49E-28 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS23270 9066ddad3d7f3d19f36504db3075e533 443 SUPERFAMILY SSF47384 212 285 1.0E-11 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS23270 9066ddad3d7f3d19f36504db3075e533 443 Gene3D G3DSA:1.10.287.130 221 282 3.0E-12 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS23270 9066ddad3d7f3d19f36504db3075e533 443 Pfam PF00672 HAMP domain 158 223 1.4E-11 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS23270 9066ddad3d7f3d19f36504db3075e533 443 SMART SM00304 176 228 1.2E-7 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS23270 9066ddad3d7f3d19f36504db3075e533 443 PANTHER PTHR24423:SF533 170 433 7.0E-125 T 23-04-2016 RPE_RS23270 9066ddad3d7f3d19f36504db3075e533 443 PANTHER PTHR24423:SF533 1 68 7.0E-125 T 23-04-2016 RPE_RS23270 9066ddad3d7f3d19f36504db3075e533 443 Gene3D G3DSA:3.30.565.10 297 438 3.8E-28 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS23270 9066ddad3d7f3d19f36504db3075e533 443 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 329 434 2.6E-16 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS23270 9066ddad3d7f3d19f36504db3075e533 443 SMART SM00387 326 436 2.5E-25 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS23270 9066ddad3d7f3d19f36504db3075e533 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 420 433 3.5E-9 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS23270 9066ddad3d7f3d19f36504db3075e533 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 396 414 3.5E-9 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS23270 9066ddad3d7f3d19f36504db3075e533 443 PRINTS PR00344 Bacterial sensor protein C-terminal signature 360 374 3.5E-9 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS23270 9066ddad3d7f3d19f36504db3075e533 443 PANTHER PTHR24423 170 433 7.0E-125 T 23-04-2016 RPE_RS23270 9066ddad3d7f3d19f36504db3075e533 443 PANTHER PTHR24423 1 68 7.0E-125 T 23-04-2016 RPE_RS23270 9066ddad3d7f3d19f36504db3075e533 443 SMART SM00388 229 287 3.3E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS05335 4e895f0403faf4459aa5b78c4a0a18c9 669 Pfam PF13662 Toprim domain 259 322 5.5E-15 T 23-04-2016 IPR006171 Toprim domain RPE_RS05335 4e895f0403faf4459aa5b78c4a0a18c9 669 Gene3D G3DSA:3.40.1360.10 239 364 3.2E-43 T 23-04-2016 RPE_RS05335 4e895f0403faf4459aa5b78c4a0a18c9 669 SUPERFAMILY SSF57783 1 98 3.57E-30 T 23-04-2016 RPE_RS05335 4e895f0403faf4459aa5b78c4a0a18c9 669 Gene3D G3DSA:3.90.580.10 1 98 1.1E-31 T 23-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 RPE_RS05335 4e895f0403faf4459aa5b78c4a0a18c9 669 TIGRFAM TIGR01391 dnaG: DNA primase 3 416 4.4E-123 T 23-04-2016 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 RPE_RS05335 4e895f0403faf4459aa5b78c4a0a18c9 669 PIRSF PIRSF002811 1 629 2.3E-126 T 23-04-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 RPE_RS05335 4e895f0403faf4459aa5b78c4a0a18c9 669 Gene3D G3DSA:3.90.980.10 111 238 1.3E-38 T 23-04-2016 IPR013264 DNA primase, catalytic core, N-terminal RPE_RS05335 4e895f0403faf4459aa5b78c4a0a18c9 669 Pfam PF01807 CHC2 zinc finger 5 97 1.3E-25 T 23-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 RPE_RS05335 4e895f0403faf4459aa5b78c4a0a18c9 669 Pfam PF10410 DnaB-helicase binding domain of primase 379 418 7.8E-5 T 23-04-2016 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 RPE_RS05335 4e895f0403faf4459aa5b78c4a0a18c9 669 SUPERFAMILY SSF56731 111 418 1.96E-96 T 23-04-2016 RPE_RS05335 4e895f0403faf4459aa5b78c4a0a18c9 669 Gene3D G3DSA:1.20.50.20 381 417 5.1E-4 T 23-04-2016 RPE_RS05335 4e895f0403faf4459aa5b78c4a0a18c9 669 Hamap MF_00974 DNA primase [dnaG]. 2 639 23.257 T 23-04-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 RPE_RS05335 4e895f0403faf4459aa5b78c4a0a18c9 669 Pfam PF08275 DNA primase catalytic core, N-terminal domain 122 249 1.7E-38 T 23-04-2016 IPR013264 DNA primase, catalytic core, N-terminal RPE_RS05335 4e895f0403faf4459aa5b78c4a0a18c9 669 SMART SM00400 34 88 2.1E-13 T 23-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 RPE_RS05335 4e895f0403faf4459aa5b78c4a0a18c9 669 SMART SM00493 257 328 1.2E-14 T 23-04-2016 IPR006171 Toprim domain RPE_RS05335 4e895f0403faf4459aa5b78c4a0a18c9 669 PANTHER PTHR30313 1 651 2.8E-125 T 23-04-2016 RPE_RS17645 af2c59a5e4c637e23ff7778f287b3c2c 565 PANTHER PTHR32089 283 562 1.2E-196 T 23-04-2016 RPE_RS17645 af2c59a5e4c637e23ff7778f287b3c2c 565 PANTHER PTHR32089 161 250 1.2E-196 T 23-04-2016 RPE_RS17645 af2c59a5e4c637e23ff7778f287b3c2c 565 Pfam PF00672 HAMP domain 196 262 4.0E-13 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS17645 af2c59a5e4c637e23ff7778f287b3c2c 565 Gene3D G3DSA:1.10.287.950 334 528 1.8E-49 T 23-04-2016 RPE_RS17645 af2c59a5e4c637e23ff7778f287b3c2c 565 SMART SM01049 38 132 1.3E-35 T 23-04-2016 IPR033480 Single Cache domain 2 RPE_RS17645 af2c59a5e4c637e23ff7778f287b3c2c 565 Pfam PF17200 Single Cache domain 2 41 191 7.2E-45 T 23-04-2016 IPR033480 Single Cache domain 2 RPE_RS17645 af2c59a5e4c637e23ff7778f287b3c2c 565 PANTHER PTHR32089:SF40 283 562 1.2E-196 T 23-04-2016 RPE_RS17645 af2c59a5e4c637e23ff7778f287b3c2c 565 PANTHER PTHR32089:SF40 161 250 1.2E-196 T 23-04-2016 RPE_RS17645 af2c59a5e4c637e23ff7778f287b3c2c 565 Gene3D G3DSA:3.30.450.20 31 185 8.7E-53 T 23-04-2016 RPE_RS17645 af2c59a5e4c637e23ff7778f287b3c2c 565 SMART SM00304 215 268 5.3E-10 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS17645 af2c59a5e4c637e23ff7778f287b3c2c 565 SUPERFAMILY SSF58104 280 558 8.37E-63 T 23-04-2016 RPE_RS17645 af2c59a5e4c637e23ff7778f287b3c2c 565 SMART SM00283 301 559 2.8E-53 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS17645 af2c59a5e4c637e23ff7778f287b3c2c 565 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 381 558 5.0E-37 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS17645 af2c59a5e4c637e23ff7778f287b3c2c 565 SUPERFAMILY SSF158472 215 263 9.15E-11 T 23-04-2016 RPE_RS08710 4afd9b9e2c5d06dd084e11d3a4ad1dd9 597 PANTHER PTHR36837 23 597 5.6E-232 T 23-04-2016 RPE_RS08710 4afd9b9e2c5d06dd084e11d3a4ad1dd9 597 SUPERFAMILY SSF53474 221 521 1.35E-39 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS08710 4afd9b9e2c5d06dd084e11d3a4ad1dd9 597 PANTHER PTHR36837:SF2 23 597 5.6E-232 T 23-04-2016 RPE_RS08710 4afd9b9e2c5d06dd084e11d3a4ad1dd9 597 Pfam PF12551 Poly-beta-hydroxybutyrate polymerase N terminal 36 75 2.8E-18 T 23-04-2016 IPR022211 Poly-beta-hydroxybutyrate polymerase N-terminal RPE_RS08710 4afd9b9e2c5d06dd084e11d3a4ad1dd9 597 Pfam PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus 110 277 1.2E-58 T 23-04-2016 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 KEGG: 00061+2.3.1.-|KEGG: 00253+2.3.1.-|KEGG: 00261+2.3.1.-|KEGG: 00310+2.3.1.-|KEGG: 00330+2.3.1.-|KEGG: 00332+2.3.1.-|KEGG: 00340+2.3.1.-|KEGG: 00350+2.3.1.-|KEGG: 00564+2.3.1.-|KEGG: 00565+2.3.1.-|KEGG: 00604+2.3.1.-|KEGG: 00623+2.3.1.-|KEGG: 00626+2.3.1.-|KEGG: 00627+2.3.1.-|KEGG: 00642+2.3.1.-|KEGG: 00650+2.3.1.-|KEGG: 00680+2.3.1.-|KEGG: 00903+2.3.1.-|KEGG: 00904+2.3.1.-|KEGG: 00906+2.3.1.-|KEGG: 00940+2.3.1.-|KEGG: 00942+2.3.1.-|KEGG: 00950+2.3.1.-|KEGG: 00960+2.3.1.-|KEGG: 00965+2.3.1.- RPE_RS08710 4afd9b9e2c5d06dd084e11d3a4ad1dd9 597 Gene3D G3DSA:3.40.50.1820 223 568 1.1E-29 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS01610 1531c69a6738f11eb5426e660d4abbaa 288 Pfam PF01678 Diaminopimelate epimerase 9 124 1.2E-13 T 23-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RPE_RS01610 1531c69a6738f11eb5426e660d4abbaa 288 Pfam PF01678 Diaminopimelate epimerase 159 273 9.9E-25 T 23-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RPE_RS01610 1531c69a6738f11eb5426e660d4abbaa 288 SUPERFAMILY SSF54506 146 279 4.26E-48 T 23-04-2016 RPE_RS01610 1531c69a6738f11eb5426e660d4abbaa 288 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 8 279 2.5E-62 T 23-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RPE_RS01610 1531c69a6738f11eb5426e660d4abbaa 288 SUPERFAMILY SSF54506 8 132 8.97E-33 T 23-04-2016 RPE_RS01610 1531c69a6738f11eb5426e660d4abbaa 288 Gene3D G3DSA:3.10.310.10 121 269 8.7E-50 T 23-04-2016 RPE_RS01610 1531c69a6738f11eb5426e660d4abbaa 288 PANTHER PTHR31689 9 285 4.8E-99 T 23-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RPE_RS01610 1531c69a6738f11eb5426e660d4abbaa 288 Gene3D G3DSA:3.10.310.10 7 120 2.3E-33 T 23-04-2016 RPE_RS01610 1531c69a6738f11eb5426e660d4abbaa 288 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 7 281 31.429 T 23-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RPE_RS01610 1531c69a6738f11eb5426e660d4abbaa 288 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 67 81 - T 23-04-2016 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RPE_RS10765 06f346e5210782497ab9de6e1443ae6d 505 PANTHER PTHR35342 3 504 0.0 T 23-04-2016 RPE_RS10765 06f346e5210782497ab9de6e1443ae6d 505 PANTHER PTHR35342:SF2 3 504 0.0 T 23-04-2016 RPE_RS10765 06f346e5210782497ab9de6e1443ae6d 505 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 21 441 3.3E-147 T 23-04-2016 IPR002823 Protein of unknown function DUF112, transmembrane RPE_RS15855 a2055fc7f04d0387bdadf47833d0d8ce 397 Hamap MF_00020 Acetate kinase [ackA]. 1 391 158.182 T 23-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RPE_RS15855 a2055fc7f04d0387bdadf47833d0d8ce 397 PRINTS PR00471 Acetate kinase family signature 317 333 3.6E-37 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RPE_RS15855 a2055fc7f04d0387bdadf47833d0d8ce 397 PRINTS PR00471 Acetate kinase family signature 369 381 3.6E-37 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RPE_RS15855 a2055fc7f04d0387bdadf47833d0d8ce 397 PRINTS PR00471 Acetate kinase family signature 4 15 3.6E-37 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RPE_RS15855 a2055fc7f04d0387bdadf47833d0d8ce 397 PRINTS PR00471 Acetate kinase family signature 201 222 3.6E-37 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RPE_RS15855 a2055fc7f04d0387bdadf47833d0d8ce 397 PRINTS PR00471 Acetate kinase family signature 295 308 3.6E-37 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RPE_RS15855 a2055fc7f04d0387bdadf47833d0d8ce 397 PRINTS PR00471 Acetate kinase family signature 172 185 3.6E-37 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RPE_RS15855 a2055fc7f04d0387bdadf47833d0d8ce 397 Pfam PF00871 Acetokinase family 4 382 9.4E-109 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RPE_RS15855 a2055fc7f04d0387bdadf47833d0d8ce 397 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 201 218 - T 23-04-2016 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RPE_RS15855 a2055fc7f04d0387bdadf47833d0d8ce 397 Gene3D G3DSA:3.30.420.40 204 387 2.3E-69 T 23-04-2016 RPE_RS15855 a2055fc7f04d0387bdadf47833d0d8ce 397 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 4 15 - T 23-04-2016 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RPE_RS15855 a2055fc7f04d0387bdadf47833d0d8ce 397 PANTHER PTHR21060 1 397 1.9E-153 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RPE_RS15855 a2055fc7f04d0387bdadf47833d0d8ce 397 SUPERFAMILY SSF53067 159 387 2.41E-77 T 23-04-2016 RPE_RS15855 a2055fc7f04d0387bdadf47833d0d8ce 397 SUPERFAMILY SSF53067 1 193 3.11E-57 T 23-04-2016 RPE_RS15855 a2055fc7f04d0387bdadf47833d0d8ce 397 PIRSF PIRSF000722 1 391 1.8E-136 T 23-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RPE_RS15855 a2055fc7f04d0387bdadf47833d0d8ce 397 TIGRFAM TIGR00016 ackA: acetate kinase 3 386 4.8E-109 T 23-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RPE_RS15855 a2055fc7f04d0387bdadf47833d0d8ce 397 Gene3D G3DSA:3.30.420.40 75 203 2.7E-6 T 23-04-2016 RPE_RS15855 a2055fc7f04d0387bdadf47833d0d8ce 397 PANTHER PTHR21060:SF11 1 397 1.9E-153 T 23-04-2016 RPE_RS12120 b2cc2242ab711de505b24841c52b0751 196 PANTHER PTHR30543:SF1 1 196 3.3E-33 T 23-04-2016 RPE_RS12120 b2cc2242ab711de505b24841c52b0751 196 PANTHER PTHR30543 1 196 3.3E-33 T 23-04-2016 RPE_RS12120 b2cc2242ab711de505b24841c52b0751 196 Gene3D G3DSA:3.40.50.360 4 190 2.4E-38 T 23-04-2016 IPR029039 Flavoprotein-like domain RPE_RS12120 b2cc2242ab711de505b24841c52b0751 196 Pfam PF03358 NADPH-dependent FMN reductase 4 147 7.0E-23 T 23-04-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 RPE_RS12120 b2cc2242ab711de505b24841c52b0751 196 SUPERFAMILY SSF52218 4 169 4.04E-33 T 23-04-2016 IPR029039 Flavoprotein-like domain RPE_RS01400 85ba65a1f5b7d5b0f5f0c81287b287fc 267 Gene3D G3DSA:1.10.10.60 222 265 4.3E-7 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS01400 85ba65a1f5b7d5b0f5f0c81287b287fc 267 SUPERFAMILY SSF46689 221 265 2.42E-5 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS01400 85ba65a1f5b7d5b0f5f0c81287b287fc 267 PANTHER PTHR11019 7 267 2.7E-90 T 23-04-2016 RPE_RS01400 85ba65a1f5b7d5b0f5f0c81287b287fc 267 Pfam PF02311 AraC-like ligand binding domain 36 99 2.1E-5 T 23-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 RPE_RS01400 85ba65a1f5b7d5b0f5f0c81287b287fc 267 SUPERFAMILY SSF51182 14 193 1.93E-19 T 23-04-2016 IPR011051 RmlC-like cupin domain RPE_RS01400 85ba65a1f5b7d5b0f5f0c81287b287fc 267 Gene3D G3DSA:1.10.10.60 164 221 2.5E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS01400 85ba65a1f5b7d5b0f5f0c81287b287fc 267 Gene3D G3DSA:2.60.120.10 21 94 2.4E-11 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS01400 85ba65a1f5b7d5b0f5f0c81287b287fc 267 SMART SM00342 184 266 2.4E-17 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RPE_RS01400 85ba65a1f5b7d5b0f5f0c81287b287fc 267 Pfam PF12833 Helix-turn-helix domain 190 267 7.7E-20 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RPE_RS01400 85ba65a1f5b7d5b0f5f0c81287b287fc 267 PANTHER PTHR11019:SF99 7 267 2.7E-90 T 23-04-2016 RPE_RS01640 25b9f31cda53e4b3c9a77331f0c6a063 510 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 2.5E-21 T 23-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 RPE_RS01640 25b9f31cda53e4b3c9a77331f0c6a063 510 SMART SM00382 99 246 3.0E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS01640 25b9f31cda53e4b3c9a77331f0c6a063 510 PANTHER PTHR11564 1 434 8.0E-230 T 23-04-2016 RPE_RS01640 25b9f31cda53e4b3c9a77331f0c6a063 510 SUPERFAMILY SSF52540 42 354 1.17E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01640 25b9f31cda53e4b3c9a77331f0c6a063 510 Pfam PF00448 SRP54-type protein, GTPase domain 103 296 1.4E-67 T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RPE_RS01640 25b9f31cda53e4b3c9a77331f0c6a063 510 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 428 8.3E-174 T 23-04-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 RPE_RS01640 25b9f31cda53e4b3c9a77331f0c6a063 510 SMART SM00962 100 296 2.1E-102 T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RPE_RS01640 25b9f31cda53e4b3c9a77331f0c6a063 510 Gene3D G3DSA:1.20.120.140 2 89 3.2E-33 T 23-04-2016 RPE_RS01640 25b9f31cda53e4b3c9a77331f0c6a063 510 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RPE_RS01640 25b9f31cda53e4b3c9a77331f0c6a063 510 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 442 32.036 T 23-04-2016 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 RPE_RS01640 25b9f31cda53e4b3c9a77331f0c6a063 510 Pfam PF02978 Signal peptide binding domain 327 427 6.7E-29 T 23-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 RPE_RS01640 25b9f31cda53e4b3c9a77331f0c6a063 510 SMART SM00963 1 86 2.9E-32 T 23-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 RPE_RS01640 25b9f31cda53e4b3c9a77331f0c6a063 510 Gene3D G3DSA:3.40.50.300 100 297 6.1E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01640 25b9f31cda53e4b3c9a77331f0c6a063 510 Gene3D G3DSA:1.10.260.30 327 431 3.5E-35 T 23-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 RPE_RS01640 25b9f31cda53e4b3c9a77331f0c6a063 510 PANTHER PTHR11564:SF7 1 434 8.0E-230 T 23-04-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 RPE_RS01640 25b9f31cda53e4b3c9a77331f0c6a063 510 SUPERFAMILY SSF47446 327 430 6.87E-34 T 23-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 RPE_RS07745 3ddbf1aa8085bf7a26a48378bfc7d6bf 403 SUPERFAMILY SSF101801 307 384 3.27E-13 T 23-04-2016 IPR001543 Surface presentation of antigen (SpoA) RPE_RS07745 3ddbf1aa8085bf7a26a48378bfc7d6bf 403 PANTHER PTHR30034:SF0 66 399 1.3E-124 T 23-04-2016 RPE_RS07745 3ddbf1aa8085bf7a26a48378bfc7d6bf 403 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 68 380 8.1E-91 T 23-04-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 RPE_RS07745 3ddbf1aa8085bf7a26a48378bfc7d6bf 403 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 310 379 1.4E-17 T 23-04-2016 IPR001543 Surface presentation of antigen (SpoA) RPE_RS07745 3ddbf1aa8085bf7a26a48378bfc7d6bf 403 PANTHER PTHR30034 66 399 1.3E-124 T 23-04-2016 RPE_RS07745 3ddbf1aa8085bf7a26a48378bfc7d6bf 403 Pfam PF02154 Flagellar motor switch protein FliM 97 288 1.4E-64 T 23-04-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 RPE_RS07745 3ddbf1aa8085bf7a26a48378bfc7d6bf 403 Gene3D G3DSA:2.30.330.10 306 383 2.6E-10 T 23-04-2016 RPE_RS07745 3ddbf1aa8085bf7a26a48378bfc7d6bf 403 PRINTS PR00955 Flagellar motor switch protein FliM signature 146 162 9.5E-22 T 23-04-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 RPE_RS07745 3ddbf1aa8085bf7a26a48378bfc7d6bf 403 PRINTS PR00955 Flagellar motor switch protein FliM signature 171 190 9.5E-22 T 23-04-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 RPE_RS07745 3ddbf1aa8085bf7a26a48378bfc7d6bf 403 PRINTS PR00955 Flagellar motor switch protein FliM signature 270 288 9.5E-22 T 23-04-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 RPE_RS07745 3ddbf1aa8085bf7a26a48378bfc7d6bf 403 PRINTS PR00955 Flagellar motor switch protein FliM signature 67 80 9.5E-22 T 23-04-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 RPE_RS07745 3ddbf1aa8085bf7a26a48378bfc7d6bf 403 SUPERFAMILY SSF103039 103 288 3.4E-10 T 23-04-2016 IPR028976 CheC-like domain RPE_RS09265 0570375d684882f01cd7584eab8a3d91 188 SUPERFAMILY SSF88659 103 180 3.05E-15 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS09265 0570375d684882f01cd7584eab8a3d91 188 Gene3D G3DSA:1.10.10.10 118 179 3.0E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS09265 0570375d684882f01cd7584eab8a3d91 188 Pfam PF04542 Sigma-70 region 2 26 92 3.0E-15 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS09265 0570375d684882f01cd7584eab8a3d91 188 PANTHER PTHR30173:SF19 1 180 4.8E-115 T 23-04-2016 RPE_RS09265 0570375d684882f01cd7584eab8a3d91 188 PANTHER PTHR30173 1 180 4.8E-115 T 23-04-2016 RPE_RS09265 0570375d684882f01cd7584eab8a3d91 188 Gene3D G3DSA:1.10.1740.10 5 117 1.2E-29 T 23-04-2016 RPE_RS09265 0570375d684882f01cd7584eab8a3d91 188 Pfam PF08281 Sigma-70, region 4 122 174 4.1E-14 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS09265 0570375d684882f01cd7584eab8a3d91 188 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 24 176 1.5E-31 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS09265 0570375d684882f01cd7584eab8a3d91 188 SUPERFAMILY SSF88946 5 103 2.88E-25 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS01770 595a428cad8cd460e4af378d71a774b9 237 Hamap MF_00564 Ribonuclease PH [rph]. 1 237 46.947 T 23-04-2016 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 RPE_RS01770 595a428cad8cd460e4af378d71a774b9 237 Pfam PF03725 3' exoribonuclease family, domain 2 159 224 2.3E-10 T 23-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 RPE_RS01770 595a428cad8cd460e4af378d71a774b9 237 ProSitePatterns PS01277 Ribonuclease PH signature. 116 129 - T 23-04-2016 IPR018336 Ribonuclease PH, conserved site RPE_RS01770 595a428cad8cd460e4af378d71a774b9 237 Pfam PF01138 3' exoribonuclease family, domain 1 10 140 1.3E-25 T 23-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 RPE_RS01770 595a428cad8cd460e4af378d71a774b9 237 PANTHER PTHR11953 1 236 1.5E-81 T 23-04-2016 RPE_RS01770 595a428cad8cd460e4af378d71a774b9 237 SUPERFAMILY SSF54211 1 181 1.82E-46 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RPE_RS01770 595a428cad8cd460e4af378d71a774b9 237 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 2 236 2.0E-112 T 23-04-2016 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 RPE_RS01770 595a428cad8cd460e4af378d71a774b9 237 SUPERFAMILY SSF55666 156 235 2.88E-23 T 23-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 RPE_RS01770 595a428cad8cd460e4af378d71a774b9 237 Gene3D G3DSA:3.30.230.70 9 236 6.5E-30 T 23-04-2016 IPR027408 PNPase/RNase PH domain RPE_RS01770 595a428cad8cd460e4af378d71a774b9 237 PANTHER PTHR11953:SF0 1 236 1.5E-81 T 23-04-2016 RPE_RS16710 5014963bb6b8ac951bc2dea72002572d 349 Pfam PF12860 PAS fold 45 157 1.8E-11 T 23-04-2016 RPE_RS16710 5014963bb6b8ac951bc2dea72002572d 349 SUPERFAMILY SSF55073 169 323 6.2E-50 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS16710 5014963bb6b8ac951bc2dea72002572d 349 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 160 323 3.5E-54 T 23-04-2016 IPR000160 GGDEF domain RPE_RS16710 5014963bb6b8ac951bc2dea72002572d 349 SMART SM00267 153 325 3.1E-65 T 23-04-2016 IPR000160 GGDEF domain RPE_RS16710 5014963bb6b8ac951bc2dea72002572d 349 Gene3D G3DSA:3.30.70.270 166 324 1.1E-53 T 23-04-2016 RPE_RS16710 5014963bb6b8ac951bc2dea72002572d 349 PANTHER PTHR10799 186 321 7.1E-32 T 23-04-2016 RPE_RS16710 5014963bb6b8ac951bc2dea72002572d 349 Pfam PF00990 Diguanylate cyclase, GGDEF domain 164 321 1.5E-47 T 23-04-2016 IPR000160 GGDEF domain RPE_RS16710 5014963bb6b8ac951bc2dea72002572d 349 Gene3D G3DSA:3.30.450.20 33 152 4.6E-7 T 23-04-2016 RPE_RS18600 f9050f519462d1aeb6a4f18b60ed2b6e 650 SMART SM00642 202 546 6.7E-6 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RPE_RS18600 f9050f519462d1aeb6a4f18b60ed2b6e 650 Gene3D G3DSA:3.20.20.80 68 105 2.0E-74 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RPE_RS18600 f9050f519462d1aeb6a4f18b60ed2b6e 650 Gene3D G3DSA:3.20.20.80 152 549 2.0E-74 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RPE_RS18600 f9050f519462d1aeb6a4f18b60ed2b6e 650 PANTHER PTHR10357 165 647 3.3E-227 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RPE_RS18600 f9050f519462d1aeb6a4f18b60ed2b6e 650 PANTHER PTHR10357 19 140 3.3E-227 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RPE_RS18600 f9050f519462d1aeb6a4f18b60ed2b6e 650 Pfam PF11896 Domain of unknown function (DUF3416) 17 192 4.7E-56 T 23-04-2016 IPR021828 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase, domain N/S GO:0004553 KEGG: 00500+2.4.99.16 RPE_RS18600 f9050f519462d1aeb6a4f18b60ed2b6e 650 PANTHER PTHR10357:SF137 165 647 3.3E-227 T 23-04-2016 RPE_RS18600 f9050f519462d1aeb6a4f18b60ed2b6e 650 PANTHER PTHR10357:SF137 19 140 3.3E-227 T 23-04-2016 RPE_RS18600 f9050f519462d1aeb6a4f18b60ed2b6e 650 Hamap MF_02124 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase [glgE]. 13 650 43.133 T 23-04-2016 IPR026585 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase GO:0016757 KEGG: 00500+2.4.99.16 RPE_RS18600 f9050f519462d1aeb6a4f18b60ed2b6e 650 SUPERFAMILY SSF51445 192 552 8.22E-90 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RPE_RS18600 f9050f519462d1aeb6a4f18b60ed2b6e 650 Pfam PF00128 Alpha amylase, catalytic domain 222 321 1.6E-6 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RPE_RS07055 c47ddf26bec37958c25292d4d0d1593f 172 PANTHER PTHR23091:SF237 1 156 2.2E-20 T 23-04-2016 RPE_RS07055 c47ddf26bec37958c25292d4d0d1593f 172 Gene3D G3DSA:3.40.630.30 5 135 1.5E-17 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS07055 c47ddf26bec37958c25292d4d0d1593f 172 Pfam PF00583 Acetyltransferase (GNAT) family 74 127 5.8E-6 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RPE_RS07055 c47ddf26bec37958c25292d4d0d1593f 172 SUPERFAMILY SSF55729 6 134 1.53E-19 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS07055 c47ddf26bec37958c25292d4d0d1593f 172 PANTHER PTHR23091 1 156 2.2E-20 T 23-04-2016 RPE_RS18125 2e2f392b43eb167c6495f61f04351b27 411 Gene3D G3DSA:1.10.540.10 1 136 2.4E-36 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS18125 2e2f392b43eb167c6495f61f04351b27 411 Gene3D G3DSA:1.20.140.10 241 406 2.2E-45 T 23-04-2016 RPE_RS18125 2e2f392b43eb167c6495f61f04351b27 411 PANTHER PTHR10909 1 407 1.5E-262 T 23-04-2016 RPE_RS18125 2e2f392b43eb167c6495f61f04351b27 411 Gene3D G3DSA:2.40.110.10 137 240 1.2E-38 T 23-04-2016 RPE_RS18125 2e2f392b43eb167c6495f61f04351b27 411 SUPERFAMILY SSF47203 249 406 3.22E-42 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS18125 2e2f392b43eb167c6495f61f04351b27 411 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 134 5.8E-21 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS18125 2e2f392b43eb167c6495f61f04351b27 411 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 138 231 1.5E-18 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RPE_RS18125 2e2f392b43eb167c6495f61f04351b27 411 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 251 399 7.7E-35 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS18125 2e2f392b43eb167c6495f61f04351b27 411 SUPERFAMILY SSF56645 1 264 5.89E-70 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RPE_RS18125 2e2f392b43eb167c6495f61f04351b27 411 PANTHER PTHR10909:SF329 1 407 1.5E-262 T 23-04-2016 RPE_RS23195 74860dd152b83111f9cc9aab4bdf7ac6 643 Gene3D G3DSA:2.40.10.10 242 354 9.0E-4 T 23-04-2016 RPE_RS23195 74860dd152b83111f9cc9aab4bdf7ac6 643 Pfam PF13365 Trypsin-like peptidase domain 139 324 1.1E-8 T 23-04-2016 RPE_RS23195 74860dd152b83111f9cc9aab4bdf7ac6 643 Gene3D G3DSA:2.40.10.10 233 241 2.7E-7 T 23-04-2016 RPE_RS23195 74860dd152b83111f9cc9aab4bdf7ac6 643 Gene3D G3DSA:2.40.10.10 122 196 2.7E-7 T 23-04-2016 RPE_RS23195 74860dd152b83111f9cc9aab4bdf7ac6 643 SUPERFAMILY SSF50494 115 168 1.78E-15 T 23-04-2016 IPR009003 Peptidase S1, PA clan RPE_RS23195 74860dd152b83111f9cc9aab4bdf7ac6 643 SUPERFAMILY SSF50494 204 336 1.78E-15 T 23-04-2016 IPR009003 Peptidase S1, PA clan RPE_RS07615 0e56f0b3a3ce927baa77488733b01511 218 PANTHER PTHR10108 37 209 8.2E-22 T 23-04-2016 RPE_RS07615 0e56f0b3a3ce927baa77488733b01511 218 Pfam PF08241 Methyltransferase domain 77 165 8.8E-16 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 RPE_RS07615 0e56f0b3a3ce927baa77488733b01511 218 Gene3D G3DSA:3.40.50.150 38 209 7.4E-30 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS07615 0e56f0b3a3ce927baa77488733b01511 218 SUPERFAMILY SSF53335 15 211 2.17E-31 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS14165 0b856b38836aeae9bc9a663fd9ecaa64 210 PANTHER PTHR26402 1 205 5.4E-84 T 23-04-2016 RPE_RS14165 0b856b38836aeae9bc9a663fd9ecaa64 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 146 200 7.7E-12 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS14165 0b856b38836aeae9bc9a663fd9ecaa64 210 PANTHER PTHR26402:SF570 1 205 5.4E-84 T 23-04-2016 RPE_RS14165 0b856b38836aeae9bc9a663fd9ecaa64 210 SUPERFAMILY SSF52172 1 126 3.56E-28 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS14165 0b856b38836aeae9bc9a663fd9ecaa64 210 SMART SM00421 143 200 3.5E-5 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS14165 0b856b38836aeae9bc9a663fd9ecaa64 210 SMART SM00448 1 113 1.6E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS14165 0b856b38836aeae9bc9a663fd9ecaa64 210 Gene3D G3DSA:3.40.50.2300 1 147 5.6E-34 T 23-04-2016 RPE_RS14165 0b856b38836aeae9bc9a663fd9ecaa64 210 SUPERFAMILY SSF46894 138 205 9.52E-15 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RPE_RS14165 0b856b38836aeae9bc9a663fd9ecaa64 210 Pfam PF00072 Response regulator receiver domain 3 113 5.1E-25 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS14165 0b856b38836aeae9bc9a663fd9ecaa64 210 Gene3D G3DSA:1.10.10.10 148 205 1.8E-15 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS05605 00c277f56f03b23467b47de37d6cfe5d 878 Gene3D G3DSA:2.130.10.140 573 763 1.6E-7 T 23-04-2016 RPE_RS05605 00c277f56f03b23467b47de37d6cfe5d 878 Gene3D G3DSA:2.130.10.140 3 292 1.1E-22 T 23-04-2016 RPE_RS05605 00c277f56f03b23467b47de37d6cfe5d 878 SUPERFAMILY SSF110296 563 763 3.4E-7 T 23-04-2016 RPE_RS05605 00c277f56f03b23467b47de37d6cfe5d 878 SUPERFAMILY SSF110296 323 390 3.4E-7 T 23-04-2016 RPE_RS05605 00c277f56f03b23467b47de37d6cfe5d 878 SUPERFAMILY SSF110296 6 290 3.01E-20 T 23-04-2016 RPE_RS11925 c88e447a02ac9630ebace5e13fc5244a 694 Gene3D G3DSA:3.30.1490.20 493 522 2.4E-5 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RPE_RS11925 c88e447a02ac9630ebace5e13fc5244a 694 Gene3D G3DSA:3.40.50.261 132 293 6.8E-21 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RPE_RS11925 c88e447a02ac9630ebace5e13fc5244a 694 PANTHER PTHR33303 3 691 1.4E-155 T 23-04-2016 RPE_RS11925 c88e447a02ac9630ebace5e13fc5244a 694 SUPERFAMILY SSF52210 302 455 1.83E-27 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RPE_RS11925 c88e447a02ac9630ebace5e13fc5244a 694 Pfam PF13549 ATP-grasp domain 476 690 1.3E-55 T 23-04-2016 RPE_RS11925 c88e447a02ac9630ebace5e13fc5244a 694 SUPERFAMILY SSF52210 135 297 3.27E-32 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RPE_RS11925 c88e447a02ac9630ebace5e13fc5244a 694 Gene3D G3DSA:3.40.50.720 4 131 5.0E-36 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS11925 c88e447a02ac9630ebace5e13fc5244a 694 Pfam PF13380 CoA binding domain 11 136 1.0E-22 T 23-04-2016 IPR003781 CoA-binding GO:0048037 RPE_RS11925 c88e447a02ac9630ebace5e13fc5244a 694 SUPERFAMILY SSF51735 3 140 5.25E-35 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS11925 c88e447a02ac9630ebace5e13fc5244a 694 SMART SM00881 7 102 2.1E-34 T 23-04-2016 IPR003781 CoA-binding GO:0048037 RPE_RS11925 c88e447a02ac9630ebace5e13fc5244a 694 SUPERFAMILY SSF56059 479 688 5.5E-30 T 23-04-2016 RPE_RS11925 c88e447a02ac9630ebace5e13fc5244a 694 PANTHER PTHR33303:SF3 3 691 1.4E-155 T 23-04-2016 RPE_RS11925 c88e447a02ac9630ebace5e13fc5244a 694 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 159 295 4.9E-38 T 23-04-2016 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain RPE_RS13235 836857332f49b4249fc017db3e05ba1a 4338 PANTHER PTHR12338:SF6 1104 3246 0.0 T 23-04-2016 RPE_RS13235 836857332f49b4249fc017db3e05ba1a 4338 SMART SM00912 135 252 1.6E-31 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal RPE_RS13235 836857332f49b4249fc017db3e05ba1a 4338 PANTHER PTHR12338 89 282 0.0 T 23-04-2016 RPE_RS13235 836857332f49b4249fc017db3e05ba1a 4338 PANTHER PTHR12338 298 951 0.0 T 23-04-2016 RPE_RS13235 836857332f49b4249fc017db3e05ba1a 4338 PANTHER PTHR12338 3292 4081 0.0 T 23-04-2016 RPE_RS13235 836857332f49b4249fc017db3e05ba1a 4338 PANTHER PTHR12338 1104 3246 0.0 T 23-04-2016 RPE_RS13235 836857332f49b4249fc017db3e05ba1a 4338 Pfam PF12545 Filamentous haemagglutinin family outer membrane protein 4147 4257 5.1E-40 T 23-04-2016 IPR021026 Filamentous haemagglutinin family outer membrane protein, domain of unknown function DUF3739 RPE_RS13235 836857332f49b4249fc017db3e05ba1a 4338 Pfam PF05860 haemagglutination activity domain 154 252 7.6E-19 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal RPE_RS13235 836857332f49b4249fc017db3e05ba1a 4338 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 172 248 1.7E-22 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal RPE_RS13235 836857332f49b4249fc017db3e05ba1a 4338 SUPERFAMILY SSF51126 144 422 2.01E-33 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor RPE_RS13235 836857332f49b4249fc017db3e05ba1a 4338 PANTHER PTHR12338:SF6 3292 4081 0.0 T 23-04-2016 RPE_RS13235 836857332f49b4249fc017db3e05ba1a 4338 PANTHER PTHR12338:SF6 89 282 0.0 T 23-04-2016 RPE_RS13235 836857332f49b4249fc017db3e05ba1a 4338 PANTHER PTHR12338:SF6 298 951 0.0 T 23-04-2016 RPE_RS13235 836857332f49b4249fc017db3e05ba1a 4338 Gene3D G3DSA:2.160.20.10 146 421 9.7E-18 T 23-04-2016 IPR012334 Pectin lyase fold RPE_RS13275 cbeee36c57987cc1b93bed085e002a79 325 Pfam PF16344 Domain of unknown function (DUF4974) 227 311 1.3E-8 T 23-04-2016 IPR032508 Protein FecR, C-terminal RPE_RS13275 cbeee36c57987cc1b93bed085e002a79 325 Pfam PF04773 FecR protein 122 214 2.5E-10 T 23-04-2016 IPR006860 FecR protein RPE_RS13275 cbeee36c57987cc1b93bed085e002a79 325 PANTHER PTHR30273 6 325 2.6E-36 T 23-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component RPE_RS13275 cbeee36c57987cc1b93bed085e002a79 325 PANTHER PTHR30273:SF2 6 325 2.6E-36 T 23-04-2016 RPE_RS13275 cbeee36c57987cc1b93bed085e002a79 325 PIRSF PIRSF018266 4 325 6.7E-57 T 23-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component RPE_RS13275 cbeee36c57987cc1b93bed085e002a79 325 Pfam PF16220 Domain of unknown function (DUF4880) 14 52 1.3E-6 T 23-04-2016 IPR032623 FecR, N-terminal RPE_RS07320 7d0ebf02295ade06b75ee52bd5a24539 334 PANTHER PTHR22604 14 315 6.6E-83 T 23-04-2016 RPE_RS07320 7d0ebf02295ade06b75ee52bd5a24539 334 Gene3D G3DSA:3.40.50.720 10 143 3.9E-42 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS07320 7d0ebf02295ade06b75ee52bd5a24539 334 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 14 131 4.9E-27 T 23-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 RPE_RS07320 7d0ebf02295ade06b75ee52bd5a24539 334 SUPERFAMILY SSF55347 136 297 1.96E-16 T 23-04-2016 RPE_RS07320 7d0ebf02295ade06b75ee52bd5a24539 334 Gene3D G3DSA:3.30.360.10 144 315 4.2E-33 T 23-04-2016 RPE_RS07320 7d0ebf02295ade06b75ee52bd5a24539 334 PANTHER PTHR22604:SF14 14 315 6.6E-83 T 23-04-2016 RPE_RS07320 7d0ebf02295ade06b75ee52bd5a24539 334 SUPERFAMILY SSF51735 11 147 1.32E-43 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS14345 c5c1ad803b240905a3ec82e194184b96 274 Gene3D G3DSA:3.90.226.10 10 214 1.8E-62 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS14345 c5c1ad803b240905a3ec82e194184b96 274 Pfam PF00378 Enoyl-CoA hydratase/isomerase 20 274 1.8E-56 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RPE_RS14345 c5c1ad803b240905a3ec82e194184b96 274 PANTHER PTHR11941:SF28 1 271 3.4E-118 T 23-04-2016 RPE_RS14345 c5c1ad803b240905a3ec82e194184b96 274 SUPERFAMILY SSF52096 17 273 2.02E-79 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS14345 c5c1ad803b240905a3ec82e194184b96 274 PANTHER PTHR11941 1 271 3.4E-118 T 23-04-2016 RPE_RS14345 c5c1ad803b240905a3ec82e194184b96 274 Gene3D G3DSA:1.10.12.10 220 274 1.7E-15 T 23-04-2016 IPR014748 Crontonase, C-terminal RPE_RS17175 c7f656a65e8df79d107c85b2f99279a5 347 Gene3D G3DSA:3.40.50.620 133 337 2.0E-34 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS17175 c7f656a65e8df79d107c85b2f99279a5 347 SMART SM00764 148 334 4.7E-111 T 23-04-2016 IPR013166 Citrate lyase ligase, C-terminal GO:0008771 RPE_RS17175 c7f656a65e8df79d107c85b2f99279a5 347 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 148 205 1.7E-11 T 23-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RPE_RS17175 c7f656a65e8df79d107c85b2f99279a5 347 SUPERFAMILY SSF55729 36 114 5.31E-8 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS17175 c7f656a65e8df79d107c85b2f99279a5 347 PANTHER PTHR40599:SF2 1 335 8.2E-143 T 23-04-2016 RPE_RS17175 c7f656a65e8df79d107c85b2f99279a5 347 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 112 341 3.0E-134 T 23-04-2016 RPE_RS17175 c7f656a65e8df79d107c85b2f99279a5 347 SUPERFAMILY SSF52374 154 335 3.56E-21 T 23-04-2016 RPE_RS17175 c7f656a65e8df79d107c85b2f99279a5 347 Gene3D G3DSA:3.40.630.30 38 113 1.6E-7 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS17175 c7f656a65e8df79d107c85b2f99279a5 347 PANTHER PTHR40599 1 335 8.2E-143 T 23-04-2016 RPE_RS17175 c7f656a65e8df79d107c85b2f99279a5 347 PIRSF PIRSF005751 8 346 3.3E-119 T 23-04-2016 IPR005216 Citrate lyase ligase GO:0008771 RPE_RS17175 c7f656a65e8df79d107c85b2f99279a5 347 TIGRFAM TIGR00124 cit_ly_ligase: [citrate (pro-3S)-lyase] ligase 19 335 1.9E-120 T 23-04-2016 IPR005216 Citrate lyase ligase GO:0008771 RPE_RS17175 c7f656a65e8df79d107c85b2f99279a5 347 Pfam PF08218 Citrate lyase ligase C-terminal domain 148 333 2.4E-72 T 23-04-2016 IPR013166 Citrate lyase ligase, C-terminal GO:0008771 RPE_RS23735 0c8f3c410a19a482a58e3d7e8fe9e241 283 PANTHER PTHR22888 11 268 3.6E-98 T 23-04-2016 RPE_RS23735 0c8f3c410a19a482a58e3d7e8fe9e241 283 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 35 121 1.3E-26 T 23-04-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 RPE_RS23735 0c8f3c410a19a482a58e3d7e8fe9e241 283 Gene3D G3DSA:2.60.40.420 122 267 1.7E-55 T 23-04-2016 IPR008972 Cupredoxin RPE_RS23735 0c8f3c410a19a482a58e3d7e8fe9e241 283 SUPERFAMILY SSF81464 27 125 1.96E-30 T 23-04-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 RPE_RS23735 0c8f3c410a19a482a58e3d7e8fe9e241 283 TIGRFAM TIGR02866 CoxB: cytochrome c oxidase, subunit II 46 263 1.0E-60 T 23-04-2016 IPR014222 Cytochrome c oxidase, subunit II GO:0016021|GO:0016491 RPE_RS23735 0c8f3c410a19a482a58e3d7e8fe9e241 283 PRINTS PR01166 Cytochrome c oxidase subunit II signature 236 253 2.0E-46 T 23-04-2016 RPE_RS23735 0c8f3c410a19a482a58e3d7e8fe9e241 283 PRINTS PR01166 Cytochrome c oxidase subunit II signature 174 195 2.0E-46 T 23-04-2016 RPE_RS23735 0c8f3c410a19a482a58e3d7e8fe9e241 283 PRINTS PR01166 Cytochrome c oxidase subunit II signature 218 235 2.0E-46 T 23-04-2016 RPE_RS23735 0c8f3c410a19a482a58e3d7e8fe9e241 283 PRINTS PR01166 Cytochrome c oxidase subunit II signature 95 107 2.0E-46 T 23-04-2016 RPE_RS23735 0c8f3c410a19a482a58e3d7e8fe9e241 283 PRINTS PR01166 Cytochrome c oxidase subunit II signature 129 148 2.0E-46 T 23-04-2016 RPE_RS23735 0c8f3c410a19a482a58e3d7e8fe9e241 283 PRINTS PR01166 Cytochrome c oxidase subunit II signature 107 127 2.0E-46 T 23-04-2016 RPE_RS23735 0c8f3c410a19a482a58e3d7e8fe9e241 283 PRINTS PR01166 Cytochrome c oxidase subunit II signature 198 218 2.0E-46 T 23-04-2016 RPE_RS23735 0c8f3c410a19a482a58e3d7e8fe9e241 283 SUPERFAMILY SSF49503 129 267 5.83E-52 T 23-04-2016 IPR008972 Cupredoxin RPE_RS23735 0c8f3c410a19a482a58e3d7e8fe9e241 283 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 199 247 - T 23-04-2016 IPR001505 Copper centre Cu(A) GO:0005507 RPE_RS23735 0c8f3c410a19a482a58e3d7e8fe9e241 283 Gene3D G3DSA:1.10.287.90 36 121 1.1E-30 T 23-04-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 RPE_RS23735 0c8f3c410a19a482a58e3d7e8fe9e241 283 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 133 254 1.1E-43 T 23-04-2016 IPR002429 Cytochrome c oxidase subunit II C-terminal GO:0004129|GO:0005507|GO:0016020 RPE_RS15625 923828201c29940988a87d45782248a6 293 PANTHER PTHR30043:SF1 5 293 9.5E-95 T 23-04-2016 RPE_RS15625 923828201c29940988a87d45782248a6 293 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 27 287 9.1E-79 T 23-04-2016 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 RPE_RS15625 923828201c29940988a87d45782248a6 293 SUPERFAMILY SSF161098 94 278 7.46E-30 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS15625 923828201c29940988a87d45782248a6 293 PANTHER PTHR30043 5 293 9.5E-95 T 23-04-2016 RPE_RS15625 923828201c29940988a87d45782248a6 293 Gene3D G3DSA:1.10.3720.10 96 287 9.7E-20 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS15625 923828201c29940988a87d45782248a6 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 122 285 8.8E-15 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS12860 0c66ac9df99877cda1256150e7be8183 277 PANTHER PTHR23416:SF8 1 250 1.0E-103 T 23-04-2016 RPE_RS12860 0c66ac9df99877cda1256150e7be8183 277 SUPERFAMILY SSF51161 3 253 4.72E-68 T 23-04-2016 IPR011004 Trimeric LpxA-like RPE_RS12860 0c66ac9df99877cda1256150e7be8183 277 PANTHER PTHR23416 1 250 1.0E-103 T 23-04-2016 RPE_RS12860 0c66ac9df99877cda1256150e7be8183 277 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 176 256 4.8E-18 T 23-04-2016 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 RPE_RS12860 0c66ac9df99877cda1256150e7be8183 277 PIRSF PIRSF000456 1 263 1.9E-98 T 23-04-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 RPE_RS12860 0c66ac9df99877cda1256150e7be8183 277 Gene3D G3DSA:2.160.10.10 3 188 4.7E-43 T 23-04-2016 RPE_RS12860 0c66ac9df99877cda1256150e7be8183 277 Gene3D G3DSA:1.20.1180.10 193 253 1.5E-12 T 23-04-2016 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 RPE_RS12860 0c66ac9df99877cda1256150e7be8183 277 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 4 255 2.4E-93 T 23-04-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 RPE_RS12860 0c66ac9df99877cda1256150e7be8183 277 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 13 46 8.0E-9 T 23-04-2016 IPR001451 Hexapeptide repeat RPE_RS03815 62570375aa93ef3d5635dea04e31ddfb 369 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS03815 62570375aa93ef3d5635dea04e31ddfb 369 PANTHER PTHR24220:SF284 259 293 1.3E-101 T 23-04-2016 RPE_RS03815 62570375aa93ef3d5635dea04e31ddfb 369 PANTHER PTHR24220:SF284 6 228 1.3E-101 T 23-04-2016 RPE_RS03815 62570375aa93ef3d5635dea04e31ddfb 369 SUPERFAMILY SSF50331 241 361 2.21E-18 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RPE_RS03815 62570375aa93ef3d5635dea04e31ddfb 369 SUPERFAMILY SSF52540 16 233 2.55E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS03815 62570375aa93ef3d5635dea04e31ddfb 369 SMART SM00382 29 213 7.8E-15 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS03815 62570375aa93ef3d5635dea04e31ddfb 369 Gene3D G3DSA:2.40.50.100 284 358 5.5E-15 T 23-04-2016 RPE_RS03815 62570375aa93ef3d5635dea04e31ddfb 369 TIGRFAM TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein 8 361 2.7E-128 T 23-04-2016 IPR011868 Molybdate ABC transporter, ATP-binding protein GO:0005524|GO:0015098|GO:0015689|GO:0016020 RPE_RS03815 62570375aa93ef3d5635dea04e31ddfb 369 Pfam PF00005 ABC transporter 24 163 1.2E-29 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS03815 62570375aa93ef3d5635dea04e31ddfb 369 Gene3D G3DSA:3.40.50.300 24 235 1.9E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS03815 62570375aa93ef3d5635dea04e31ddfb 369 Pfam PF03459 TOBE domain 296 361 1.4E-11 T 23-04-2016 IPR005116 Transport-associated OB, type 1 RPE_RS03815 62570375aa93ef3d5635dea04e31ddfb 369 PANTHER PTHR24220 259 293 1.3E-101 T 23-04-2016 RPE_RS03815 62570375aa93ef3d5635dea04e31ddfb 369 PANTHER PTHR24220 6 228 1.3E-101 T 23-04-2016 RPE_RS00925 59d83cf7072311e2b3e44e344e9c93d9 426 PIRSF PIRSF004640 11 417 3.8E-131 T 23-04-2016 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 RPE_RS00925 59d83cf7072311e2b3e44e344e9c93d9 426 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 18 406 3.2E-124 T 23-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 RPE_RS00925 59d83cf7072311e2b3e44e344e9c93d9 426 PANTHER PTHR30454 7 412 4.1E-150 T 23-04-2016 RPE_RS00925 59d83cf7072311e2b3e44e344e9c93d9 426 Pfam PF04551 GcpE protein 21 407 5.9E-111 T 23-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 RPE_RS00925 59d83cf7072311e2b3e44e344e9c93d9 426 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 16 414 29.521 T 23-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 RPE_RS18115 75f5fb3fd9e7195e50d6ca2aee29d1bb 261 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 186 6.7E-4 T 23-04-2016 RPE_RS18115 75f5fb3fd9e7195e50d6ca2aee29d1bb 261 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RPE_RS18115 75f5fb3fd9e7195e50d6ca2aee29d1bb 261 SUPERFAMILY SSF51735 5 252 4.23E-75 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS18115 75f5fb3fd9e7195e50d6ca2aee29d1bb 261 PANTHER PTHR24322:SF542 155 186 2.9E-85 T 23-04-2016 RPE_RS18115 75f5fb3fd9e7195e50d6ca2aee29d1bb 261 PANTHER PTHR24322:SF542 11 139 2.9E-85 T 23-04-2016 RPE_RS18115 75f5fb3fd9e7195e50d6ca2aee29d1bb 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 1.3E-5 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18115 75f5fb3fd9e7195e50d6ca2aee29d1bb 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 1.3E-5 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18115 75f5fb3fd9e7195e50d6ca2aee29d1bb 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 1.3E-5 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18115 75f5fb3fd9e7195e50d6ca2aee29d1bb 261 PANTHER PTHR24322 155 186 2.9E-85 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18115 75f5fb3fd9e7195e50d6ca2aee29d1bb 261 PANTHER PTHR24322 11 139 2.9E-85 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18115 75f5fb3fd9e7195e50d6ca2aee29d1bb 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 7.9E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18115 75f5fb3fd9e7195e50d6ca2aee29d1bb 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 7.9E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18115 75f5fb3fd9e7195e50d6ca2aee29d1bb 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 7.9E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18115 75f5fb3fd9e7195e50d6ca2aee29d1bb 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 7.9E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18115 75f5fb3fd9e7195e50d6ca2aee29d1bb 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 7.9E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18115 75f5fb3fd9e7195e50d6ca2aee29d1bb 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 7.9E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18115 75f5fb3fd9e7195e50d6ca2aee29d1bb 261 Gene3D G3DSA:3.40.50.720 1 252 6.1E-79 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS18115 75f5fb3fd9e7195e50d6ca2aee29d1bb 261 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 251 3.1E-63 T 23-04-2016 RPE_RS21800 5bb4612a63e00d9466490e0871a8f675 225 Pfam PF13545 Crp-like helix-turn-helix domain 155 218 1.0E-14 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RPE_RS21800 5bb4612a63e00d9466490e0871a8f675 225 SMART SM00100 14 134 3.4E-4 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RPE_RS21800 5bb4612a63e00d9466490e0871a8f675 225 Gene3D G3DSA:1.10.10.10 151 220 3.7E-15 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS21800 5bb4612a63e00d9466490e0871a8f675 225 PANTHER PTHR24567 1 220 8.6E-36 T 23-04-2016 RPE_RS21800 5bb4612a63e00d9466490e0871a8f675 225 Gene3D G3DSA:2.60.120.10 8 149 5.1E-28 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS21800 5bb4612a63e00d9466490e0871a8f675 225 SMART SM00419 164 212 4.1E-11 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RPE_RS21800 5bb4612a63e00d9466490e0871a8f675 225 SUPERFAMILY SSF46785 151 220 8.35E-15 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS21800 5bb4612a63e00d9466490e0871a8f675 225 SUPERFAMILY SSF51206 9 149 2.75E-28 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like RPE_RS21800 5bb4612a63e00d9466490e0871a8f675 225 Pfam PF00027 Cyclic nucleotide-binding domain 35 121 1.3E-14 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RPE_RS13270 3a6264ad1aeaf1e571c8052e88754f05 202 SUPERFAMILY SSF88659 91 170 4.05E-9 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS13270 3a6264ad1aeaf1e571c8052e88754f05 202 Pfam PF04542 Sigma-70 region 2 17 78 9.0E-7 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS13270 3a6264ad1aeaf1e571c8052e88754f05 202 Gene3D G3DSA:1.10.1740.10 17 100 6.2E-10 T 23-04-2016 RPE_RS13270 3a6264ad1aeaf1e571c8052e88754f05 202 Gene3D G3DSA:1.10.10.10 103 167 1.7E-7 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS13270 3a6264ad1aeaf1e571c8052e88754f05 202 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 16 157 1.3E-16 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS13270 3a6264ad1aeaf1e571c8052e88754f05 202 Pfam PF08281 Sigma-70, region 4 109 157 1.3E-9 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS13270 3a6264ad1aeaf1e571c8052e88754f05 202 SUPERFAMILY SSF88946 2 74 1.84E-9 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS13270 3a6264ad1aeaf1e571c8052e88754f05 202 PANTHER PTHR30173:SF30 9 174 2.6E-29 T 23-04-2016 RPE_RS13270 3a6264ad1aeaf1e571c8052e88754f05 202 PANTHER PTHR30173 9 174 2.6E-29 T 23-04-2016 RPE_RS05650 d028d211d5fd9c6b06d46cc1be6d33c6 435 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 201 293 4.1E-38 T 23-04-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 RPE_RS05650 d028d211d5fd9c6b06d46cc1be6d33c6 435 SUPERFAMILY SSF48179 201 298 5.71E-33 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RPE_RS05650 d028d211d5fd9c6b06d46cc1be6d33c6 435 SUPERFAMILY SSF52413 307 428 9.42E-38 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 RPE_RS05650 d028d211d5fd9c6b06d46cc1be6d33c6 435 SUPERFAMILY SSF51735 1 189 5.84E-53 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS05650 d028d211d5fd9c6b06d46cc1be6d33c6 435 PIRSF PIRSF500134 1 435 1.5E-185 T 23-04-2016 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00500+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|UniPathway: UPA00038 RPE_RS05650 d028d211d5fd9c6b06d46cc1be6d33c6 435 PANTHER PTHR11374 1 434 1.3E-237 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 RPE_RS05650 d028d211d5fd9c6b06d46cc1be6d33c6 435 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 317 417 5.2E-31 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 RPE_RS05650 d028d211d5fd9c6b06d46cc1be6d33c6 435 PANTHER PTHR11374:SF18 1 434 1.3E-237 T 23-04-2016 RPE_RS05650 d028d211d5fd9c6b06d46cc1be6d33c6 435 SMART SM00984 317 418 1.8E-50 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 RPE_RS05650 d028d211d5fd9c6b06d46cc1be6d33c6 435 Gene3D G3DSA:1.20.5.100 205 231 3.3E-20 T 23-04-2016 RPE_RS05650 d028d211d5fd9c6b06d46cc1be6d33c6 435 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 414 4.9E-140 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 RPE_RS05650 d028d211d5fd9c6b06d46cc1be6d33c6 435 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 183 3.1E-68 T 23-04-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 RPE_RS05650 d028d211d5fd9c6b06d46cc1be6d33c6 435 Gene3D G3DSA:3.40.50.720 232 434 1.9E-76 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS05650 d028d211d5fd9c6b06d46cc1be6d33c6 435 Gene3D G3DSA:3.40.50.720 1 204 1.1E-75 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS05650 d028d211d5fd9c6b06d46cc1be6d33c6 435 PIRSF PIRSF000124 1 433 8.2E-146 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 RPE_RS19895 d63c2fa21322d5e38fed9b307e5d112f 308 Gene3D G3DSA:1.10.10.10 6 86 5.6E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS19895 d63c2fa21322d5e38fed9b307e5d112f 308 SUPERFAMILY SSF53850 92 300 1.71E-32 T 23-04-2016 RPE_RS19895 d63c2fa21322d5e38fed9b307e5d112f 308 PANTHER PTHR30346 6 296 1.6E-77 T 23-04-2016 RPE_RS19895 d63c2fa21322d5e38fed9b307e5d112f 308 PANTHER PTHR30346:SF15 6 296 1.6E-77 T 23-04-2016 RPE_RS19895 d63c2fa21322d5e38fed9b307e5d112f 308 Pfam PF03466 LysR substrate binding domain 92 297 2.4E-35 T 23-04-2016 IPR005119 LysR, substrate-binding RPE_RS19895 d63c2fa21322d5e38fed9b307e5d112f 308 SUPERFAMILY SSF46785 6 90 4.09E-19 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS19895 d63c2fa21322d5e38fed9b307e5d112f 308 Gene3D G3DSA:3.40.190.10 92 185 2.7E-23 T 23-04-2016 RPE_RS19895 d63c2fa21322d5e38fed9b307e5d112f 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 2.3E-15 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS19895 d63c2fa21322d5e38fed9b307e5d112f 308 Gene3D G3DSA:3.40.190.10 186 268 4.3E-21 T 23-04-2016 RPE_RS24160 38c8df84007d3c74fbdaaf427a24875c 417 Gene3D G3DSA:3.30.1490.20 186 263 1.6E-4 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RPE_RS24160 38c8df84007d3c74fbdaaf427a24875c 417 SUPERFAMILY SSF56059 180 374 4.37E-15 T 23-04-2016 RPE_RS04990 ca1dd1a89de2d98e9a86e4b02efc78ef 359 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 274 348 4.9E-17 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RPE_RS04990 ca1dd1a89de2d98e9a86e4b02efc78ef 359 Pfam PF00970 Oxidoreductase FAD-binding domain 13 106 2.9E-14 T 23-04-2016 IPR008333 Oxidoreductase, FAD-binding domain RPE_RS04990 ca1dd1a89de2d98e9a86e4b02efc78ef 359 TIGRFAM TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit 7 357 9.3E-140 T 23-04-2016 IPR011884 Phenylacetate-CoA oxygenase/reductase, PaaK subunit GO:0010124 KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.-|UniPathway: UPA00930 RPE_RS04990 ca1dd1a89de2d98e9a86e4b02efc78ef 359 Gene3D G3DSA:3.10.20.30 241 357 5.7E-32 T 23-04-2016 IPR012675 Beta-grasp domain RPE_RS04990 ca1dd1a89de2d98e9a86e4b02efc78ef 359 PANTHER PTHR19370 7 267 1.9E-62 T 23-04-2016 RPE_RS04990 ca1dd1a89de2d98e9a86e4b02efc78ef 359 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 305 313 - T 23-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RPE_RS04990 ca1dd1a89de2d98e9a86e4b02efc78ef 359 SUPERFAMILY SSF54292 237 355 2.62E-27 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RPE_RS04990 ca1dd1a89de2d98e9a86e4b02efc78ef 359 Gene3D G3DSA:2.40.30.10 4 96 1.1E-27 T 23-04-2016 RPE_RS04990 ca1dd1a89de2d98e9a86e4b02efc78ef 359 PANTHER PTHR19370:SF93 7 267 1.9E-62 T 23-04-2016 RPE_RS04990 ca1dd1a89de2d98e9a86e4b02efc78ef 359 Pfam PF00175 Oxidoreductase NAD-binding domain 122 228 2.5E-15 T 23-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RPE_RS04990 ca1dd1a89de2d98e9a86e4b02efc78ef 359 SUPERFAMILY SSF63380 4 107 1.45E-27 T 23-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 RPE_RS04990 ca1dd1a89de2d98e9a86e4b02efc78ef 359 SUPERFAMILY SSF52343 97 245 1.19E-33 T 23-04-2016 RPE_RS04990 ca1dd1a89de2d98e9a86e4b02efc78ef 359 Gene3D G3DSA:3.40.50.80 97 240 2.1E-38 T 23-04-2016 RPE_RS04990 ca1dd1a89de2d98e9a86e4b02efc78ef 359 PRINTS PR00410 Phenol hydroxylase reductase family signature 119 138 3.2E-7 T 23-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 RPE_RS04990 ca1dd1a89de2d98e9a86e4b02efc78ef 359 PRINTS PR00410 Phenol hydroxylase reductase family signature 144 153 3.2E-7 T 23-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 RPE_RS04990 ca1dd1a89de2d98e9a86e4b02efc78ef 359 PRINTS PR00410 Phenol hydroxylase reductase family signature 39 51 3.2E-7 T 23-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 RPE_RS04990 ca1dd1a89de2d98e9a86e4b02efc78ef 359 PRINTS PR00410 Phenol hydroxylase reductase family signature 215 223 3.2E-7 T 23-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 RPE_RS11660 391078fc2220c0c4ef5bf2032e5d2425 246 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 198 214 2.2E-7 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS11660 391078fc2220c0c4ef5bf2032e5d2425 246 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 198 2.2E-7 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS11660 391078fc2220c0c4ef5bf2032e5d2425 246 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 214 226 2.2E-7 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS11660 391078fc2220c0c4ef5bf2032e5d2425 246 SUPERFAMILY SSF46894 172 244 6.46E-16 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RPE_RS11660 391078fc2220c0c4ef5bf2032e5d2425 246 SMART SM00421 181 238 2.0E-17 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS11660 391078fc2220c0c4ef5bf2032e5d2425 246 SUPERFAMILY SSF75516 14 176 4.71E-42 T 23-04-2016 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain RPE_RS11660 391078fc2220c0c4ef5bf2032e5d2425 246 Gene3D G3DSA:1.10.10.10 186 244 4.0E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS11660 391078fc2220c0c4ef5bf2032e5d2425 246 Gene3D G3DSA:3.30.450.80 14 185 2.8E-39 T 23-04-2016 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain RPE_RS11660 391078fc2220c0c4ef5bf2032e5d2425 246 Pfam PF00196 Bacterial regulatory proteins, luxR family 183 238 1.6E-14 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS11660 391078fc2220c0c4ef5bf2032e5d2425 246 Pfam PF03472 Autoinducer binding domain 30 169 1.2E-34 T 23-04-2016 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain RPE_RS02140 bfb73b2579603692cc40eb05da727288 204 SUPERFAMILY SSF53098 17 191 1.31E-52 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RPE_RS02140 bfb73b2579603692cc40eb05da727288 204 PANTHER PTHR12124 15 201 2.0E-96 T 23-04-2016 RPE_RS02140 bfb73b2579603692cc40eb05da727288 204 Gene3D G3DSA:3.30.420.10 17 172 2.1E-25 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RPE_RS02140 bfb73b2579603692cc40eb05da727288 204 Pfam PF01612 3'-5' exonuclease 18 168 1.0E-38 T 23-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RPE_RS02140 bfb73b2579603692cc40eb05da727288 204 SMART SM00474 1 169 5.0E-40 T 23-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RPE_RS02140 bfb73b2579603692cc40eb05da727288 204 PANTHER PTHR12124:SF48 15 201 2.0E-96 T 23-04-2016 RPE_RS15510 9b27dda08aef71507e4ffef9e2448056 160 ProSitePatterns PS00201 Flavodoxin signature. 5 21 - T 23-04-2016 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 RPE_RS15510 9b27dda08aef71507e4ffef9e2448056 160 Pfam PF00258 Flavodoxin 5 155 1.2E-21 T 23-04-2016 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 RPE_RS15510 9b27dda08aef71507e4ffef9e2448056 160 TIGRFAM TIGR01752 flav_long: flavodoxin 3 158 1.8E-53 T 23-04-2016 IPR010086 Flavodoxin, long chain GO:0010181 RPE_RS15510 9b27dda08aef71507e4ffef9e2448056 160 Gene3D G3DSA:3.40.50.360 4 159 1.4E-46 T 23-04-2016 IPR029039 Flavoprotein-like domain RPE_RS15510 9b27dda08aef71507e4ffef9e2448056 160 PIRSF PIRSF038996 1 160 4.4E-57 T 23-04-2016 IPR010086 Flavodoxin, long chain GO:0010181 RPE_RS15510 9b27dda08aef71507e4ffef9e2448056 160 PANTHER PTHR19384 1 116 3.4E-25 T 23-04-2016 RPE_RS15510 9b27dda08aef71507e4ffef9e2448056 160 PANTHER PTHR19384 136 156 3.4E-25 T 23-04-2016 RPE_RS15510 9b27dda08aef71507e4ffef9e2448056 160 PANTHER PTHR19384:SF73 1 116 3.4E-25 T 23-04-2016 RPE_RS15510 9b27dda08aef71507e4ffef9e2448056 160 PANTHER PTHR19384:SF73 136 156 3.4E-25 T 23-04-2016 RPE_RS15510 9b27dda08aef71507e4ffef9e2448056 160 SUPERFAMILY SSF52218 4 159 2.03E-40 T 23-04-2016 IPR029039 Flavoprotein-like domain RPE_RS13080 e02860df316716e7aeb6a83268c60ed8 378 PANTHER PTHR11695:SF28 89 264 3.7E-51 T 23-04-2016 RPE_RS13080 e02860df316716e7aeb6a83268c60ed8 378 PANTHER PTHR11695:SF28 20 57 3.7E-51 T 23-04-2016 RPE_RS13080 e02860df316716e7aeb6a83268c60ed8 378 SUPERFAMILY SSF50129 90 182 3.09E-23 T 23-04-2016 IPR011032 GroES-like RPE_RS13080 e02860df316716e7aeb6a83268c60ed8 378 SUPERFAMILY SSF50129 17 63 3.09E-23 T 23-04-2016 IPR011032 GroES-like RPE_RS13080 e02860df316716e7aeb6a83268c60ed8 378 Gene3D G3DSA:3.40.50.720 181 263 3.4E-7 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS13080 e02860df316716e7aeb6a83268c60ed8 378 PANTHER PTHR11695 89 264 3.7E-51 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RPE_RS13080 e02860df316716e7aeb6a83268c60ed8 378 PANTHER PTHR11695 20 57 3.7E-51 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RPE_RS13080 e02860df316716e7aeb6a83268c60ed8 378 Gene3D G3DSA:3.90.180.10 22 180 3.1E-23 T 23-04-2016 IPR011032 GroES-like RPE_RS13080 e02860df316716e7aeb6a83268c60ed8 378 SUPERFAMILY SSF51735 148 256 1.84E-14 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS05375 480bd758d4c5c611b3a8a5a8e4c50efb 246 PANTHER PTHR32319 1 243 3.3E-104 T 23-04-2016 RPE_RS05375 480bd758d4c5c611b3a8a5a8e4c50efb 246 SUPERFAMILY SSF55174 6 81 9.13E-8 T 23-04-2016 RPE_RS05375 480bd758d4c5c611b3a8a5a8e4c50efb 246 PIRSF PIRSF005578 1 246 6.5E-89 T 23-04-2016 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 RPE_RS05375 480bd758d4c5c611b3a8a5a8e4c50efb 246 TIGRFAM TIGR00478 tly: TlyA family rRNA methyltransferase/putative hemolysin 7 236 1.2E-59 T 23-04-2016 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 RPE_RS05375 480bd758d4c5c611b3a8a5a8e4c50efb 246 Pfam PF01479 S4 domain 7 52 2.5E-6 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RPE_RS05375 480bd758d4c5c611b3a8a5a8e4c50efb 246 Pfam PF01728 FtsJ-like methyltransferase 61 240 1.0E-19 T 23-04-2016 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 RPE_RS05375 480bd758d4c5c611b3a8a5a8e4c50efb 246 PANTHER PTHR32319:SF0 1 243 3.3E-104 T 23-04-2016 RPE_RS05375 480bd758d4c5c611b3a8a5a8e4c50efb 246 Gene3D G3DSA:3.40.50.150 93 160 2.2E-4 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS05375 480bd758d4c5c611b3a8a5a8e4c50efb 246 SMART SM00363 6 70 4.8E-4 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RPE_RS05375 480bd758d4c5c611b3a8a5a8e4c50efb 246 Gene3D G3DSA:3.10.290.10 6 92 7.0E-18 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RPE_RS05375 480bd758d4c5c611b3a8a5a8e4c50efb 246 SUPERFAMILY SSF53335 60 241 6.81E-20 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS19950 cb4ca9cfff3dd8163f1de73119ea75cd 397 PANTHER PTHR24423 89 396 4.4E-38 T 23-04-2016 RPE_RS19950 cb4ca9cfff3dd8163f1de73119ea75cd 397 SUPERFAMILY SSF55874 249 393 8.91E-29 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS19950 cb4ca9cfff3dd8163f1de73119ea75cd 397 SMART SM00387 286 395 1.9E-25 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS19950 cb4ca9cfff3dd8163f1de73119ea75cd 397 SMART SM00388 189 247 4.4E-4 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS19950 cb4ca9cfff3dd8163f1de73119ea75cd 397 Gene3D G3DSA:1.10.287.130 182 233 4.4E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS19950 cb4ca9cfff3dd8163f1de73119ea75cd 397 Pfam PF00672 HAMP domain 120 183 2.1E-6 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS19950 cb4ca9cfff3dd8163f1de73119ea75cd 397 Gene3D G3DSA:3.30.565.10 234 395 7.3E-29 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS19950 cb4ca9cfff3dd8163f1de73119ea75cd 397 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 287 392 5.6E-17 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS19950 cb4ca9cfff3dd8163f1de73119ea75cd 397 PRINTS PR00344 Bacterial sensor protein C-terminal signature 355 373 1.7E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS19950 cb4ca9cfff3dd8163f1de73119ea75cd 397 PRINTS PR00344 Bacterial sensor protein C-terminal signature 338 348 1.7E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS19950 cb4ca9cfff3dd8163f1de73119ea75cd 397 PRINTS PR00344 Bacterial sensor protein C-terminal signature 320 334 1.7E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS19950 cb4ca9cfff3dd8163f1de73119ea75cd 397 SUPERFAMILY SSF47384 173 247 1.45E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS23395 3e07463b8f5b4813201aaf4f2000a9a4 281 Gene3D G3DSA:3.40.50.1820 6 280 3.0E-73 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS23395 3e07463b8f5b4813201aaf4f2000a9a4 281 SUPERFAMILY SSF53474 4 280 1.71E-84 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS23395 3e07463b8f5b4813201aaf4f2000a9a4 281 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 5 279 3.7E-123 T 23-04-2016 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801 RPE_RS23395 3e07463b8f5b4813201aaf4f2000a9a4 281 Pfam PF00756 Putative esterase 23 273 1.9E-54 T 23-04-2016 IPR000801 Putative esterase RPE_RS23395 3e07463b8f5b4813201aaf4f2000a9a4 281 PANTHER PTHR10061 3 281 1.9E-152 T 23-04-2016 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801 RPE_RS07945 15cde6224dbf058f49094340f5af8f5b 224 Pfam PF01323 DSBA-like thioredoxin domain 7 210 1.9E-37 T 23-04-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 RPE_RS07945 15cde6224dbf058f49094340f5af8f5b 224 PANTHER PTHR13887:SF10 1 224 9.5E-56 T 23-04-2016 RPE_RS07945 15cde6224dbf058f49094340f5af8f5b 224 PANTHER PTHR13887 1 224 9.5E-56 T 23-04-2016 RPE_RS07945 15cde6224dbf058f49094340f5af8f5b 224 Gene3D G3DSA:3.40.30.10 5 214 1.4E-49 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS07945 15cde6224dbf058f49094340f5af8f5b 224 SUPERFAMILY SSF52833 4 215 1.49E-48 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS03105 b373ee4f4181280cf3a0ad7eded0952b 150 Pfam PF00034 Cytochrome c 50 134 1.8E-9 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS03105 b373ee4f4181280cf3a0ad7eded0952b 150 SUPERFAMILY SSF46626 35 148 1.64E-19 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS03105 b373ee4f4181280cf3a0ad7eded0952b 150 Gene3D G3DSA:1.10.760.10 30 134 1.4E-14 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS00345 34a318c3270e7f3eeafb36922eace2a8 648 PANTHER PTHR24095:SF178 10 646 0.0 T 23-04-2016 RPE_RS00345 34a318c3270e7f3eeafb36922eace2a8 648 Gene3D G3DSA:2.30.38.10 436 512 2.1E-7 T 23-04-2016 RPE_RS00345 34a318c3270e7f3eeafb36922eace2a8 648 Gene3D G3DSA:3.40.50.980 78 263 1.4E-41 T 23-04-2016 RPE_RS00345 34a318c3270e7f3eeafb36922eace2a8 648 Gene3D G3DSA:3.40.50.980 264 421 1.3E-27 T 23-04-2016 RPE_RS00345 34a318c3270e7f3eeafb36922eace2a8 648 PANTHER PTHR24095 10 646 0.0 T 23-04-2016 RPE_RS00345 34a318c3270e7f3eeafb36922eace2a8 648 Gene3D G3DSA:3.30.300.30 515 632 7.2E-28 T 23-04-2016 RPE_RS00345 34a318c3270e7f3eeafb36922eace2a8 648 SUPERFAMILY SSF56801 8 639 2.49E-182 T 23-04-2016 RPE_RS00345 34a318c3270e7f3eeafb36922eace2a8 648 Pfam PF13193 AMP-binding enzyme C-terminal domain 528 606 1.9E-25 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RPE_RS00345 34a318c3270e7f3eeafb36922eace2a8 648 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 1 642 53.182 T 23-04-2016 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118|Reactome: REACT_13433 RPE_RS00345 34a318c3270e7f3eeafb36922eace2a8 648 ProSitePatterns PS00455 Putative AMP-binding domain signature. 258 269 - T 23-04-2016 IPR020845 AMP-binding, conserved site RPE_RS00345 34a318c3270e7f3eeafb36922eace2a8 648 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 21 640 0.0 T 23-04-2016 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118|Reactome: REACT_13433 RPE_RS00345 34a318c3270e7f3eeafb36922eace2a8 648 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 23 80 6.4E-20 T 23-04-2016 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118 RPE_RS00345 34a318c3270e7f3eeafb36922eace2a8 648 Pfam PF00501 AMP-binding enzyme 83 519 1.4E-92 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS12565 4474d2cc173558b17e2477a7d8ac718f 112 Gene3D G3DSA:3.30.70.120 2 112 5.4E-49 T 23-04-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RPE_RS12565 4474d2cc173558b17e2477a7d8ac718f 112 SMART SM00938 4 105 3.9E-65 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RPE_RS12565 4474d2cc173558b17e2477a7d8ac718f 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 9.4E-43 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RPE_RS12565 4474d2cc173558b17e2477a7d8ac718f 112 PANTHER PTHR30115 2 112 2.2E-62 T 23-04-2016 RPE_RS12565 4474d2cc173558b17e2477a7d8ac718f 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 23-04-2016 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 RPE_RS12565 4474d2cc173558b17e2477a7d8ac718f 112 PRINTS PR00340 P-II protein signature 23 41 5.2E-45 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RPE_RS12565 4474d2cc173558b17e2477a7d8ac718f 112 PRINTS PR00340 P-II protein signature 2 17 5.2E-45 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RPE_RS12565 4474d2cc173558b17e2477a7d8ac718f 112 PRINTS PR00340 P-II protein signature 83 103 5.2E-45 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RPE_RS12565 4474d2cc173558b17e2477a7d8ac718f 112 PRINTS PR00340 P-II protein signature 52 75 5.2E-45 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RPE_RS12565 4474d2cc173558b17e2477a7d8ac718f 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 23-04-2016 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 RPE_RS12565 4474d2cc173558b17e2477a7d8ac718f 112 SUPERFAMILY SSF54913 2 112 2.13E-44 T 23-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta RPE_RS12565 4474d2cc173558b17e2477a7d8ac718f 112 PIRSF PIRSF039144 1 112 9.4E-53 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RPE_RS11985 0b518bc2e413b80985068ad8464d9fd0 574 Gene3D G3DSA:3.30.300.30 445 546 2.6E-24 T 23-04-2016 RPE_RS11985 0b518bc2e413b80985068ad8464d9fd0 574 Pfam PF13193 AMP-binding enzyme C-terminal domain 456 534 2.3E-18 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RPE_RS11985 0b518bc2e413b80985068ad8464d9fd0 574 PANTHER PTHR24095:SF180 16 548 1.5E-199 T 23-04-2016 RPE_RS11985 0b518bc2e413b80985068ad8464d9fd0 574 Gene3D G3DSA:3.40.50.980 208 365 3.2E-28 T 23-04-2016 RPE_RS11985 0b518bc2e413b80985068ad8464d9fd0 574 Pfam PF00501 AMP-binding enzyme 52 447 9.1E-69 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS11985 0b518bc2e413b80985068ad8464d9fd0 574 Gene3D G3DSA:3.40.50.980 52 207 2.7E-28 T 23-04-2016 RPE_RS11985 0b518bc2e413b80985068ad8464d9fd0 574 PANTHER PTHR24095 16 548 1.5E-199 T 23-04-2016 RPE_RS11985 0b518bc2e413b80985068ad8464d9fd0 574 Gene3D G3DSA:2.30.38.10 366 441 2.1E-11 T 23-04-2016 RPE_RS11985 0b518bc2e413b80985068ad8464d9fd0 574 SUPERFAMILY SSF56801 14 546 9.16E-129 T 23-04-2016 RPE_RS05890 4951a14af4df072fd9d206dc4d3f26ff 231 PRINTS PR01008 Flagellar L-ring protein signature 145 160 1.3E-27 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RPE_RS05890 4951a14af4df072fd9d206dc4d3f26ff 231 PRINTS PR01008 Flagellar L-ring protein signature 208 222 1.3E-27 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RPE_RS05890 4951a14af4df072fd9d206dc4d3f26ff 231 PRINTS PR01008 Flagellar L-ring protein signature 73 85 1.3E-27 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RPE_RS05890 4951a14af4df072fd9d206dc4d3f26ff 231 PRINTS PR01008 Flagellar L-ring protein signature 171 187 1.3E-27 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RPE_RS05890 4951a14af4df072fd9d206dc4d3f26ff 231 PRINTS PR01008 Flagellar L-ring protein signature 192 206 1.3E-27 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RPE_RS05890 4951a14af4df072fd9d206dc4d3f26ff 231 PANTHER PTHR34933 26 231 4.6E-59 T 23-04-2016 RPE_RS05890 4951a14af4df072fd9d206dc4d3f26ff 231 Pfam PF02107 Flagellar L-ring protein 55 230 1.3E-54 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RPE_RS05890 4951a14af4df072fd9d206dc4d3f26ff 231 Hamap MF_00415 Flagellar L-ring protein [flgH]. 1 229 22.891 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RPE_RS05890 4951a14af4df072fd9d206dc4d3f26ff 231 PANTHER PTHR34933:SF1 26 231 4.6E-59 T 23-04-2016 RPE_RS09220 5a40fa27b13bf2e113d11cdcd048765c 95 Pfam PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH 6 72 9.1E-13 T 23-04-2016 IPR022789 Antitoxin ParD RPE_RS09220 5a40fa27b13bf2e113d11cdcd048765c 95 SUPERFAMILY SSF47598 3 43 5.11E-9 T 23-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 RPE_RS09220 5a40fa27b13bf2e113d11cdcd048765c 95 PANTHER PTHR36582:SF2 6 91 4.3E-12 T 23-04-2016 RPE_RS09220 5a40fa27b13bf2e113d11cdcd048765c 95 TIGRFAM TIGR02606 antidote_CC2985: putative addiction module antidote protein, CC2985 family 5 62 2.8E-16 T 23-04-2016 IPR022789 Antitoxin ParD RPE_RS09220 5a40fa27b13bf2e113d11cdcd048765c 95 PANTHER PTHR36582 6 91 4.3E-12 T 23-04-2016 RPE_RS03840 8d1fe80c6b3a74c290ddc526111be2e9 945 Gene3D G3DSA:1.10.1060.10 131 284 1.7E-26 T 23-04-2016 RPE_RS03840 8d1fe80c6b3a74c290ddc526111be2e9 945 SUPERFAMILY SSF63380 652 741 3.78E-14 T 23-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 RPE_RS03840 8d1fe80c6b3a74c290ddc526111be2e9 945 PANTHER PTHR11938 214 842 2.6E-103 T 23-04-2016 RPE_RS03840 8d1fe80c6b3a74c290ddc526111be2e9 945 SUPERFAMILY SSF52343 750 919 4.85E-28 T 23-04-2016 RPE_RS03840 8d1fe80c6b3a74c290ddc526111be2e9 945 Gene3D G3DSA:3.40.50.720 565 627 2.9E-21 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS03840 8d1fe80c6b3a74c290ddc526111be2e9 945 Gene3D G3DSA:3.40.50.720 310 398 2.9E-21 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS03840 8d1fe80c6b3a74c290ddc526111be2e9 945 Pfam PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B 879 919 2.6E-10 T 23-04-2016 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain UniPathway: UPA00070 RPE_RS03840 8d1fe80c6b3a74c290ddc526111be2e9 945 PANTHER PTHR11938:SF90 214 842 2.6E-103 T 23-04-2016 RPE_RS03840 8d1fe80c6b3a74c290ddc526111be2e9 945 SUPERFAMILY SSF51971 309 560 1.0E-55 T 23-04-2016 RPE_RS03840 8d1fe80c6b3a74c290ddc526111be2e9 945 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 211 282 2.3E-18 T 23-04-2016 IPR028261 Dihydroprymidine dehydrogenase domain II RPE_RS03840 8d1fe80c6b3a74c290ddc526111be2e9 945 Gene3D G3DSA:3.50.50.60 399 560 3.6E-38 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS03840 8d1fe80c6b3a74c290ddc526111be2e9 945 Gene3D G3DSA:3.40.50.80 749 877 6.4E-28 T 23-04-2016 RPE_RS03840 8d1fe80c6b3a74c290ddc526111be2e9 945 SUPERFAMILY SSF46548 138 317 1.05E-17 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 RPE_RS03840 8d1fe80c6b3a74c290ddc526111be2e9 945 Gene3D G3DSA:2.40.30.10 651 741 8.2E-15 T 23-04-2016 RPE_RS03840 8d1fe80c6b3a74c290ddc526111be2e9 945 PRINTS PR00419 Adrenodoxin reductase family signature 332 345 1.1E-13 T 23-04-2016 RPE_RS03840 8d1fe80c6b3a74c290ddc526111be2e9 945 PRINTS PR00419 Adrenodoxin reductase family signature 451 465 1.1E-13 T 23-04-2016 RPE_RS03840 8d1fe80c6b3a74c290ddc526111be2e9 945 PRINTS PR00419 Adrenodoxin reductase family signature 309 331 1.1E-13 T 23-04-2016 RPE_RS03840 8d1fe80c6b3a74c290ddc526111be2e9 945 PRINTS PR00419 Adrenodoxin reductase family signature 374 384 1.1E-13 T 23-04-2016 RPE_RS03840 8d1fe80c6b3a74c290ddc526111be2e9 945 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 310 614 2.3E-25 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS21180 fc951c472ee0246b70abe213768e9ef2 259 PANTHER PTHR21485 1 231 1.9E-33 T 23-04-2016 RPE_RS21180 fc951c472ee0246b70abe213768e9ef2 259 PANTHER PTHR21485:SF20 1 231 1.9E-33 T 23-04-2016 RPE_RS21180 fc951c472ee0246b70abe213768e9ef2 259 Gene3D G3DSA:3.90.550.10 5 235 2.3E-60 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS21180 fc951c472ee0246b70abe213768e9ef2 259 Pfam PF02348 Cytidylyltransferase 8 83 1.6E-21 T 23-04-2016 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 RPE_RS21180 fc951c472ee0246b70abe213768e9ef2 259 SUPERFAMILY SSF53448 5 235 1.05E-37 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS13130 06288c42031e8db50d728aa2973e7544 473 PANTHER PTHR22912 3 120 1.7E-214 T 23-04-2016 RPE_RS13130 06288c42031e8db50d728aa2973e7544 473 PANTHER PTHR22912 142 466 1.7E-214 T 23-04-2016 RPE_RS13130 06288c42031e8db50d728aa2973e7544 473 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 40 50 - T 23-04-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 RPE_RS13130 06288c42031e8db50d728aa2973e7544 473 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 6 471 2.2E-180 T 23-04-2016 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084 RPE_RS13130 06288c42031e8db50d728aa2973e7544 473 Gene3D G3DSA:3.50.50.60 4 148 1.8E-41 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS13130 06288c42031e8db50d728aa2973e7544 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 350 371 1.08E-67 T 23-04-2016 RPE_RS13130 06288c42031e8db50d728aa2973e7544 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 1.08E-67 T 23-04-2016 RPE_RS13130 06288c42031e8db50d728aa2973e7544 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 272 286 1.08E-67 T 23-04-2016 RPE_RS13130 06288c42031e8db50d728aa2973e7544 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 156 1.08E-67 T 23-04-2016 RPE_RS13130 06288c42031e8db50d728aa2973e7544 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 1.08E-67 T 23-04-2016 RPE_RS13130 06288c42031e8db50d728aa2973e7544 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 437 457 1.08E-67 T 23-04-2016 RPE_RS13130 06288c42031e8db50d728aa2973e7544 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 314 321 1.08E-67 T 23-04-2016 RPE_RS13130 06288c42031e8db50d728aa2973e7544 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 183 208 1.08E-67 T 23-04-2016 RPE_RS13130 06288c42031e8db50d728aa2973e7544 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 415 430 1.08E-67 T 23-04-2016 RPE_RS13130 06288c42031e8db50d728aa2973e7544 473 Gene3D G3DSA:3.30.390.30 341 470 2.1E-49 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RPE_RS13130 06288c42031e8db50d728aa2973e7544 473 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 334 6.7E-69 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS13130 06288c42031e8db50d728aa2973e7544 473 SUPERFAMILY SSF55424 350 471 5.67E-41 T 23-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 RPE_RS13130 06288c42031e8db50d728aa2973e7544 473 Gene3D G3DSA:3.50.50.60 149 340 2.2E-52 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS13130 06288c42031e8db50d728aa2973e7544 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 271 287 6.61E-39 T 23-04-2016 RPE_RS13130 06288c42031e8db50d728aa2973e7544 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 299 321 6.61E-39 T 23-04-2016 RPE_RS13130 06288c42031e8db50d728aa2973e7544 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 6.61E-39 T 23-04-2016 RPE_RS13130 06288c42031e8db50d728aa2973e7544 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 144 162 6.61E-39 T 23-04-2016 RPE_RS13130 06288c42031e8db50d728aa2973e7544 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 183 201 6.61E-39 T 23-04-2016 RPE_RS13130 06288c42031e8db50d728aa2973e7544 473 PIRSF PIRSF000350 2 470 1.4E-82 T 23-04-2016 RPE_RS13130 06288c42031e8db50d728aa2973e7544 473 PANTHER PTHR22912:SF125 3 120 1.7E-214 T 23-04-2016 RPE_RS13130 06288c42031e8db50d728aa2973e7544 473 PANTHER PTHR22912:SF125 142 466 1.7E-214 T 23-04-2016 RPE_RS13130 06288c42031e8db50d728aa2973e7544 473 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 354 462 1.6E-38 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RPE_RS13130 06288c42031e8db50d728aa2973e7544 473 SUPERFAMILY SSF51905 2 381 2.36E-70 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS18940 fa175d5bc2ba1eed2d102b8e88443b11 411 PANTHER PTHR30483 3 407 3.7E-208 T 23-04-2016 RPE_RS18940 fa175d5bc2ba1eed2d102b8e88443b11 411 PANTHER PTHR30483:SF11 3 407 3.7E-208 T 23-04-2016 RPE_RS18940 fa175d5bc2ba1eed2d102b8e88443b11 411 SUPERFAMILY SSF53822 40 401 1.67E-75 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RPE_RS18940 fa175d5bc2ba1eed2d102b8e88443b11 411 Gene3D G3DSA:3.40.50.2300 36 163 9.3E-34 T 23-04-2016 RPE_RS18940 fa175d5bc2ba1eed2d102b8e88443b11 411 Gene3D G3DSA:3.40.50.2300 326 367 9.3E-34 T 23-04-2016 RPE_RS18940 fa175d5bc2ba1eed2d102b8e88443b11 411 Pfam PF13458 Periplasmic binding protein 40 391 9.4E-58 T 23-04-2016 IPR028081 Leucine-binding protein domain RPE_RS18940 fa175d5bc2ba1eed2d102b8e88443b11 411 Gene3D G3DSA:3.40.50.2300 164 325 1.8E-20 T 23-04-2016 RPE_RS21510 e772538eb4ac1560522126fa81e74756 560 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 29 193 6.6E-39 T 23-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RPE_RS21510 e772538eb4ac1560522126fa81e74756 560 SUPERFAMILY SSF52518 30 198 1.13E-36 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS21510 e772538eb4ac1560522126fa81e74756 560 Gene3D G3DSA:3.40.50.1220 204 360 4.2E-43 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RPE_RS21510 e772538eb4ac1560522126fa81e74756 560 Gene3D G3DSA:3.40.50.970 30 195 1.1E-39 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS21510 e772538eb4ac1560522126fa81e74756 560 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 213 347 5.8E-19 T 23-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RPE_RS21510 e772538eb4ac1560522126fa81e74756 560 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 400 542 8.8E-34 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RPE_RS21510 e772538eb4ac1560522126fa81e74756 560 Gene3D G3DSA:3.40.50.970 367 547 2.6E-52 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS21510 e772538eb4ac1560522126fa81e74756 560 SUPERFAMILY SSF52518 372 553 4.16E-51 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS21510 e772538eb4ac1560522126fa81e74756 560 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 432 451 - T 23-04-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 RPE_RS21510 e772538eb4ac1560522126fa81e74756 560 PANTHER PTHR18968:SF133 8 545 4.2E-237 T 23-04-2016 RPE_RS21510 e772538eb4ac1560522126fa81e74756 560 SUPERFAMILY SSF52467 205 361 1.15E-59 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RPE_RS21510 e772538eb4ac1560522126fa81e74756 560 PANTHER PTHR18968 8 545 4.2E-237 T 23-04-2016 RPE_RS14490 774d27e1091207357c61d3deed5c8ac6 242 PANTHER PTHR11587 10 232 6.1E-79 T 23-04-2016 RPE_RS14490 774d27e1091207357c61d3deed5c8ac6 242 PANTHER PTHR11587:SF3 10 232 6.1E-79 T 23-04-2016 RPE_RS14490 774d27e1091207357c61d3deed5c8ac6 242 Gene3D G3DSA:3.40.50.620 10 236 8.6E-72 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS14490 774d27e1091207357c61d3deed5c8ac6 242 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 10 226 4.2E-59 T 23-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 RPE_RS14490 774d27e1091207357c61d3deed5c8ac6 242 SUPERFAMILY SSF52402 10 233 4.19E-52 T 23-04-2016 RPE_RS14490 774d27e1091207357c61d3deed5c8ac6 242 Pfam PF06508 Queuosine biosynthesis protein QueC 10 233 1.7E-71 T 23-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 RPE_RS14490 774d27e1091207357c61d3deed5c8ac6 242 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 8 239 51.224 T 23-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 RPE_RS14490 774d27e1091207357c61d3deed5c8ac6 242 PIRSF PIRSF006293 6 241 6.5E-67 T 23-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 RPE_RS18780 82e3c507d7c7ef49bd174d8c82c0b52e 324 Pfam PF00482 Type II secretion system (T2SS), protein F 158 281 7.2E-19 T 23-04-2016 IPR018076 Type II secretion system F domain RPE_RS18780 82e3c507d7c7ef49bd174d8c82c0b52e 324 PANTHER PTHR35007:SF1 1 324 6.5E-103 T 23-04-2016 RPE_RS18780 82e3c507d7c7ef49bd174d8c82c0b52e 324 PANTHER PTHR35007 1 324 6.5E-103 T 23-04-2016 RPE_RS01855 fc35a01ca44bdeb2b9604b1966890c60 197 SUPERFAMILY SSF54211 88 178 2.28E-36 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RPE_RS01855 fc35a01ca44bdeb2b9604b1966890c60 197 PANTHER PTHR23133 1 195 1.5E-106 T 23-04-2016 RPE_RS01855 fc35a01ca44bdeb2b9604b1966890c60 197 Gene3D G3DSA:3.30.230.40 1 88 3.6E-38 T 23-04-2016 RPE_RS01855 fc35a01ca44bdeb2b9604b1966890c60 197 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 156 168 - T 23-04-2016 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 RPE_RS01855 fc35a01ca44bdeb2b9604b1966890c60 197 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 31 174 5.1E-66 T 23-04-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 RPE_RS01855 fc35a01ca44bdeb2b9604b1966890c60 197 SUPERFAMILY SSF54211 1 84 3.41E-33 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RPE_RS01855 fc35a01ca44bdeb2b9604b1966890c60 197 PANTHER PTHR23133:SF2 1 195 1.5E-106 T 23-04-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 RPE_RS01855 fc35a01ca44bdeb2b9604b1966890c60 197 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 2 195 43.1 T 23-04-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 RPE_RS01855 fc35a01ca44bdeb2b9604b1966890c60 197 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 61 74 - T 23-04-2016 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 RPE_RS01855 fc35a01ca44bdeb2b9604b1966890c60 197 Gene3D G3DSA:3.30.230.40 90 195 6.5E-34 T 23-04-2016 RPE_RS21995 cfeedef973e9521e977fde4e7debda3a 535 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 16 35 2.0E-6 T 23-04-2016 RPE_RS21995 cfeedef973e9521e977fde4e7debda3a 535 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 350 372 2.0E-6 T 23-04-2016 RPE_RS21995 cfeedef973e9521e977fde4e7debda3a 535 Gene3D G3DSA:3.90.700.10 241 343 5.5E-32 T 23-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain RPE_RS21995 cfeedef973e9521e977fde4e7debda3a 535 PANTHER PTHR11632:SF27 15 521 9.9E-181 T 23-04-2016 RPE_RS21995 cfeedef973e9521e977fde4e7debda3a 535 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 14 498 1.3E-147 T 23-04-2016 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 RPE_RS21995 cfeedef973e9521e977fde4e7debda3a 535 Gene3D G3DSA:3.50.50.60 344 403 8.5E-83 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS21995 cfeedef973e9521e977fde4e7debda3a 535 Gene3D G3DSA:3.50.50.60 14 240 8.5E-83 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS21995 cfeedef973e9521e977fde4e7debda3a 535 SUPERFAMILY SSF46977 427 508 3.53E-21 T 23-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 RPE_RS21995 cfeedef973e9521e977fde4e7debda3a 535 Pfam PF02910 Fumarate reductase flavoprotein C-term 467 501 1.0E-7 T 23-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 RPE_RS21995 cfeedef973e9521e977fde4e7debda3a 535 SUPERFAMILY SSF51905 351 403 9.22E-53 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS21995 cfeedef973e9521e977fde4e7debda3a 535 SUPERFAMILY SSF51905 14 261 9.22E-53 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS21995 cfeedef973e9521e977fde4e7debda3a 535 Pfam PF00890 FAD binding domain 15 387 4.7E-80 T 23-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain RPE_RS21995 cfeedef973e9521e977fde4e7debda3a 535 PANTHER PTHR11632 15 521 9.9E-181 T 23-04-2016 RPE_RS21995 cfeedef973e9521e977fde4e7debda3a 535 Gene3D G3DSA:1.20.58.100 426 503 1.1E-16 T 23-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 RPE_RS21995 cfeedef973e9521e977fde4e7debda3a 535 SUPERFAMILY SSF56425 235 347 6.88E-36 T 23-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain RPE_RS13590 9a882ecadd4d3b5e131ae0af2f241f19 476 PANTHER PTHR30024 23 341 1.9E-41 T 23-04-2016 RPE_RS13590 9a882ecadd4d3b5e131ae0af2f241f19 476 Pfam PF16868 NMT1-like family 79 343 2.0E-17 T 23-04-2016 IPR011852 TRAP transporter solute receptor, TAXI family RPE_RS13590 9a882ecadd4d3b5e131ae0af2f241f19 476 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 38 343 5.7E-26 T 23-04-2016 IPR011852 TRAP transporter solute receptor, TAXI family RPE_RS13590 9a882ecadd4d3b5e131ae0af2f241f19 476 Gene3D G3DSA:3.40.190.10 62 141 5.6E-18 T 23-04-2016 RPE_RS13590 9a882ecadd4d3b5e131ae0af2f241f19 476 Gene3D G3DSA:3.40.190.10 281 343 5.6E-18 T 23-04-2016 RPE_RS13590 9a882ecadd4d3b5e131ae0af2f241f19 476 PANTHER PTHR30024:SF5 23 341 1.9E-41 T 23-04-2016 RPE_RS13590 9a882ecadd4d3b5e131ae0af2f241f19 476 Gene3D G3DSA:3.40.190.10 154 280 1.7E-14 T 23-04-2016 RPE_RS13590 9a882ecadd4d3b5e131ae0af2f241f19 476 SUPERFAMILY SSF53850 60 343 2.17E-41 T 23-04-2016 RPE_RS07010 f11c929978ae44fa471a734592711306 90 PIRSF PIRSF006156 1 90 4.9E-27 T 23-04-2016 IPR004386 Toxin-antitoxin system, YafQ-like toxin RPE_RS07010 f11c929978ae44fa471a734592711306 90 Pfam PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ 3 89 2.5E-33 T 23-04-2016 IPR004386 Toxin-antitoxin system, YafQ-like toxin RPE_RS07010 f11c929978ae44fa471a734592711306 90 PANTHER PTHR40588 1 89 1.7E-21 T 23-04-2016 RPE_RS07010 f11c929978ae44fa471a734592711306 90 SUPERFAMILY SSF143011 1 88 7.85E-27 T 23-04-2016 RPE_RS07010 f11c929978ae44fa471a734592711306 90 TIGRFAM TIGR02385 RelE_StbE: addiction module toxin, RelE/StbE family 3 88 3.4E-23 T 23-04-2016 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family RPE_RS16975 a1870b267469cae4fe22e1e973df325a 432 Pfam PF00817 impB/mucB/samB family 51 197 1.7E-44 T 23-04-2016 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS16975 a1870b267469cae4fe22e1e973df325a 432 Gene3D G3DSA:3.30.70.270 108 206 7.0E-25 T 23-04-2016 RPE_RS16975 a1870b267469cae4fe22e1e973df325a 432 Gene3D G3DSA:1.10.150.20 209 277 1.4E-18 T 23-04-2016 RPE_RS16975 a1870b267469cae4fe22e1e973df325a 432 SUPERFAMILY SSF100879 282 380 1.2E-26 T 23-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS16975 a1870b267469cae4fe22e1e973df325a 432 Pfam PF11799 impB/mucB/samB family C-terminal domain 280 388 6.9E-17 T 23-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS16975 a1870b267469cae4fe22e1e973df325a 432 Gene3D G3DSA:3.30.1490.100 284 386 5.4E-32 T 23-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS16975 a1870b267469cae4fe22e1e973df325a 432 Hamap MF_01113 DNA polymerase IV [dinB]. 45 394 34.267 T 23-04-2016 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS16975 a1870b267469cae4fe22e1e973df325a 432 SUPERFAMILY SSF56672 47 277 5.6E-76 T 23-04-2016 RPE_RS16975 a1870b267469cae4fe22e1e973df325a 432 PANTHER PTHR11076 49 384 2.3E-109 T 23-04-2016 RPE_RS21745 8841d152fb9dd0e6722c9ef73a429889 326 Gene3D G3DSA:1.20.58.340 131 168 6.1E-4 T 23-04-2016 RPE_RS21745 8841d152fb9dd0e6722c9ef73a429889 326 Gene3D G3DSA:1.20.58.340 250 326 1.5E-27 T 23-04-2016 RPE_RS21745 8841d152fb9dd0e6722c9ef73a429889 326 Pfam PF01544 CorA-like Mg2+ transporter protein 26 321 8.4E-50 T 23-04-2016 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 RPE_RS21745 8841d152fb9dd0e6722c9ef73a429889 326 SUPERFAMILY SSF144083 261 324 7.59E-21 T 23-04-2016 RPE_RS21745 8841d152fb9dd0e6722c9ef73a429889 326 PANTHER PTHR21535 22 326 9.9E-130 T 23-04-2016 RPE_RS21745 8841d152fb9dd0e6722c9ef73a429889 326 PANTHER PTHR21535:SF37 22 326 9.9E-130 T 23-04-2016 RPE_RS21745 8841d152fb9dd0e6722c9ef73a429889 326 SUPERFAMILY SSF143865 18 265 4.45E-37 T 23-04-2016 RPE_RS24360 ce115f9229dafb3969d6c92dbcd09afd 206 PANTHER PTHR36558 5 203 6.3E-13 T 23-04-2016 RPE_RS24360 ce115f9229dafb3969d6c92dbcd09afd 206 Pfam PF05685 Putative restriction endonuclease 19 156 1.6E-14 T 23-04-2016 IPR008538 Domain of unknown function DUF820 RPE_RS24360 ce115f9229dafb3969d6c92dbcd09afd 206 SUPERFAMILY SSF52980 9 120 5.36E-11 T 23-04-2016 IPR011335 Restriction endonuclease type II-like RPE_RS24360 ce115f9229dafb3969d6c92dbcd09afd 206 Gene3D G3DSA:3.90.1570.10 9 120 3.6E-10 T 23-04-2016 IPR012296 Nuclease, putative, TT1808 RPE_RS13050 c24610ec68a3898919e4606a5c2831f7 994 SUPERFAMILY SSF52343 89 248 1.27E-32 T 23-04-2016 RPE_RS13050 c24610ec68a3898919e4606a5c2831f7 994 PANTHER PTHR11938:SF90 316 753 2.1E-141 T 23-04-2016 RPE_RS13050 c24610ec68a3898919e4606a5c2831f7 994 SUPERFAMILY SSF47240 850 985 1.39E-19 T 23-04-2016 IPR009078 Ferritin-like superfamily RPE_RS13050 c24610ec68a3898919e4606a5c2831f7 994 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 310 420 1.0E-39 T 23-04-2016 IPR028261 Dihydroprymidine dehydrogenase domain II RPE_RS13050 c24610ec68a3898919e4606a5c2831f7 994 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 434 740 1.3E-34 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS13050 c24610ec68a3898919e4606a5c2831f7 994 Gene3D G3DSA:3.50.50.60 525 686 4.3E-44 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS13050 c24610ec68a3898919e4606a5c2831f7 994 Gene3D G3DSA:1.10.1060.10 299 436 3.3E-40 T 23-04-2016 RPE_RS13050 c24610ec68a3898919e4606a5c2831f7 994 Gene3D G3DSA:1.20.1260.10 850 985 1.4E-28 T 23-04-2016 IPR012347 Ferritin-related RPE_RS13050 c24610ec68a3898919e4606a5c2831f7 994 Gene3D G3DSA:3.40.50.80 95 210 1.3E-35 T 23-04-2016 RPE_RS13050 c24610ec68a3898919e4606a5c2831f7 994 SUPERFAMILY SSF46548 297 443 1.26E-31 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 RPE_RS13050 c24610ec68a3898919e4606a5c2831f7 994 TIGRFAM TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric 308 752 2.3E-163 T 23-04-2016 IPR006004 Glutamate synthase (NADPH), homotetrameric KEGG: 00195+1.18.1.2|MetaCyc: PWY-101|MetaCyc: PWY-7230 RPE_RS13050 c24610ec68a3898919e4606a5c2831f7 994 SUPERFAMILY SSF63380 1 91 3.21E-15 T 23-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 RPE_RS13050 c24610ec68a3898919e4606a5c2831f7 994 PRINTS PR00419 Adrenodoxin reductase family signature 457 470 9.492192E-19 T 23-04-2016 RPE_RS13050 c24610ec68a3898919e4606a5c2831f7 994 PRINTS PR00419 Adrenodoxin reductase family signature 434 456 9.492192E-19 T 23-04-2016 RPE_RS13050 c24610ec68a3898919e4606a5c2831f7 994 PRINTS PR00419 Adrenodoxin reductase family signature 499 509 9.492192E-19 T 23-04-2016 RPE_RS13050 c24610ec68a3898919e4606a5c2831f7 994 PRINTS PR00419 Adrenodoxin reductase family signature 576 590 9.492192E-19 T 23-04-2016 RPE_RS13050 c24610ec68a3898919e4606a5c2831f7 994 PANTHER PTHR11938 316 753 2.1E-141 T 23-04-2016 RPE_RS13050 c24610ec68a3898919e4606a5c2831f7 994 Pfam PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B 212 248 5.6E-11 T 23-04-2016 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain UniPathway: UPA00070 RPE_RS13050 c24610ec68a3898919e4606a5c2831f7 994 SUPERFAMILY SSF51971 434 685 2.71E-64 T 23-04-2016 RPE_RS13050 c24610ec68a3898919e4606a5c2831f7 994 Gene3D G3DSA:2.40.30.10 1 91 6.6E-20 T 23-04-2016 RPE_RS13050 c24610ec68a3898919e4606a5c2831f7 994 Gene3D G3DSA:3.40.50.720 690 760 3.5E-29 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS13050 c24610ec68a3898919e4606a5c2831f7 994 Gene3D G3DSA:3.40.50.720 437 524 3.5E-29 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS17415 d998dea91616fe0ed0e23c000fcba525 330 PANTHER PTHR30273:SF2 10 330 2.0E-41 T 23-04-2016 RPE_RS17415 d998dea91616fe0ed0e23c000fcba525 330 PANTHER PTHR30273 10 330 2.0E-41 T 23-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component RPE_RS17415 d998dea91616fe0ed0e23c000fcba525 330 PIRSF PIRSF018266 7 330 3.9E-66 T 23-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component RPE_RS17415 d998dea91616fe0ed0e23c000fcba525 330 Pfam PF16344 Domain of unknown function (DUF4974) 231 315 4.4E-8 T 23-04-2016 IPR032508 Protein FecR, C-terminal RPE_RS17415 d998dea91616fe0ed0e23c000fcba525 330 Pfam PF16220 Domain of unknown function (DUF4880) 16 58 9.8E-10 T 23-04-2016 IPR032623 FecR, N-terminal RPE_RS17415 d998dea91616fe0ed0e23c000fcba525 330 Pfam PF04773 FecR protein 122 217 2.3E-9 T 23-04-2016 IPR006860 FecR protein RPE_RS03015 29a81f0aea7e27db97c7b3ec805192c0 523 Gene3D G3DSA:3.40.50.980 183 342 2.8E-31 T 23-04-2016 RPE_RS03015 29a81f0aea7e27db97c7b3ec805192c0 523 Pfam PF00501 AMP-binding enzyme 21 428 7.0E-95 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS03015 29a81f0aea7e27db97c7b3ec805192c0 523 SUPERFAMILY SSF56801 11 522 5.1E-144 T 23-04-2016 RPE_RS03015 29a81f0aea7e27db97c7b3ec805192c0 523 Gene3D G3DSA:3.30.300.30 424 519 6.6E-32 T 23-04-2016 RPE_RS03015 29a81f0aea7e27db97c7b3ec805192c0 523 Gene3D G3DSA:3.40.50.980 20 182 2.3E-39 T 23-04-2016 RPE_RS03015 29a81f0aea7e27db97c7b3ec805192c0 523 Gene3D G3DSA:2.30.38.10 347 421 8.6E-18 T 23-04-2016 RPE_RS03015 29a81f0aea7e27db97c7b3ec805192c0 523 Pfam PF13193 AMP-binding enzyme C-terminal domain 436 511 1.0E-19 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RPE_RS03015 29a81f0aea7e27db97c7b3ec805192c0 523 TIGRFAM TIGR02262 benz_CoA_lig: benzoate-CoA ligase family 10 520 5.0E-255 T 23-04-2016 IPR011957 Benzoate-CoA ligase family GO:0005524|GO:0016405 RPE_RS03015 29a81f0aea7e27db97c7b3ec805192c0 523 PANTHER PTHR24095 10 519 1.4E-153 T 23-04-2016 RPE_RS24765 a67a6029371f16001cc2dce9028495fa 224 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 49 210 5.3E-45 T 23-04-2016 IPR000160 GGDEF domain RPE_RS24765 a67a6029371f16001cc2dce9028495fa 224 SMART SM00267 42 210 5.7E-55 T 23-04-2016 IPR000160 GGDEF domain RPE_RS24765 a67a6029371f16001cc2dce9028495fa 224 PANTHER PTHR10799 9 208 7.7E-22 T 23-04-2016 RPE_RS24765 a67a6029371f16001cc2dce9028495fa 224 SUPERFAMILY SSF55073 58 211 5.41E-46 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS24765 a67a6029371f16001cc2dce9028495fa 224 Gene3D G3DSA:3.30.70.270 55 214 3.2E-50 T 23-04-2016 RPE_RS24765 a67a6029371f16001cc2dce9028495fa 224 PANTHER PTHR10799:SF710 9 208 7.7E-22 T 23-04-2016 RPE_RS24765 a67a6029371f16001cc2dce9028495fa 224 Pfam PF00990 Diguanylate cyclase, GGDEF domain 53 206 1.2E-41 T 23-04-2016 IPR000160 GGDEF domain RPE_RS02460 73e3e7d5a794a65c4331775778de12a6 474 PANTHER PTHR10742:SF277 28 462 1.4E-83 T 23-04-2016 RPE_RS02460 73e3e7d5a794a65c4331775778de12a6 474 Gene3D G3DSA:3.40.50.720 121 153 5.2E-6 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS02460 73e3e7d5a794a65c4331775778de12a6 474 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 404 419 1.9E-5 T 23-04-2016 RPE_RS02460 73e3e7d5a794a65c4331775778de12a6 474 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 35 57 1.9E-5 T 23-04-2016 RPE_RS02460 73e3e7d5a794a65c4331775778de12a6 474 SUPERFAMILY SSF51905 376 439 1.04E-53 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS02460 73e3e7d5a794a65c4331775778de12a6 474 SUPERFAMILY SSF51905 32 297 1.04E-53 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS02460 73e3e7d5a794a65c4331775778de12a6 474 SUPERFAMILY SSF54373 283 387 5.57E-11 T 23-04-2016 RPE_RS02460 73e3e7d5a794a65c4331775778de12a6 474 Pfam PF01593 Flavin containing amine oxidoreductase 44 436 3.0E-46 T 23-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 RPE_RS02460 73e3e7d5a794a65c4331775778de12a6 474 PANTHER PTHR10742 28 462 1.4E-83 T 23-04-2016 RPE_RS02460 73e3e7d5a794a65c4331775778de12a6 474 Gene3D G3DSA:3.50.50.60 32 115 1.2E-51 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS02460 73e3e7d5a794a65c4331775778de12a6 474 Gene3D G3DSA:3.50.50.60 202 299 1.2E-51 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS02460 73e3e7d5a794a65c4331775778de12a6 474 Gene3D G3DSA:3.50.50.60 396 441 1.2E-51 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS06590 960706c28901807bf1393661105d49e7 340 TIGRFAM TIGR02030 BchI-ChlI: magnesium chelatase ATPase subunit I 5 339 4.2E-161 T 23-04-2016 IPR011775 Magnesium chelatase, ATPase subunit I GO:0005524|GO:0015995|GO:0016851 KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00668 RPE_RS06590 960706c28901807bf1393661105d49e7 340 SUPERFAMILY SSF52540 5 328 2.33E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS06590 960706c28901807bf1393661105d49e7 340 SMART SM00382 28 209 7.0E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS06590 960706c28901807bf1393661105d49e7 340 Pfam PF01078 Magnesium chelatase, subunit ChlI 117 186 4.3E-8 T 23-04-2016 IPR000523 Magnesium chelatase ChlI domain RPE_RS06590 960706c28901807bf1393661105d49e7 340 Gene3D G3DSA:1.10.8.80 252 339 6.1E-30 T 23-04-2016 RPE_RS06590 960706c28901807bf1393661105d49e7 340 Gene3D G3DSA:3.40.50.300 4 205 4.2E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS06590 960706c28901807bf1393661105d49e7 340 PANTHER PTHR32039 4 340 1.1E-146 T 23-04-2016 RPE_RS06590 960706c28901807bf1393661105d49e7 340 PANTHER PTHR32039:SF10 4 340 1.1E-146 T 23-04-2016 RPE_RS18650 4f169252ad295a5b9cdfb652b1894675 79 SUPERFAMILY SSF64307 4 73 2.88E-20 T 23-04-2016 IPR001455 TusA-like domain RPE_RS18650 4f169252ad295a5b9cdfb652b1894675 79 Gene3D G3DSA:3.30.110.40 4 73 2.3E-22 T 23-04-2016 IPR001455 TusA-like domain RPE_RS18650 4f169252ad295a5b9cdfb652b1894675 79 Pfam PF01206 Sulfurtransferase TusA 6 73 1.4E-18 T 23-04-2016 IPR001455 TusA-like domain RPE_RS18650 4f169252ad295a5b9cdfb652b1894675 79 PANTHER PTHR33279 6 75 2.8E-15 T 23-04-2016 RPE_RS18650 4f169252ad295a5b9cdfb652b1894675 79 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 6 30 - T 23-04-2016 IPR001455 TusA-like domain RPE_RS24295 9014cb9b92a9f08db69345802501f603 723 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 453 571 4.0E-14 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS24295 9014cb9b92a9f08db69345802501f603 723 SMART SM00388 342 411 3.5E-5 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS24295 9014cb9b92a9f08db69345802501f603 723 SUPERFAMILY SSF55785 155 279 1.45E-12 T 23-04-2016 IPR000014 PAS domain RPE_RS24295 9014cb9b92a9f08db69345802501f603 723 Gene3D G3DSA:3.30.565.10 410 571 1.2E-33 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS24295 9014cb9b92a9f08db69345802501f603 723 SMART SM00387 452 573 1.3E-23 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS24295 9014cb9b92a9f08db69345802501f603 723 PANTHER PTHR24423:SF438 43 303 4.2E-171 T 23-04-2016 RPE_RS24295 9014cb9b92a9f08db69345802501f603 723 PANTHER PTHR24423:SF438 338 710 4.2E-171 T 23-04-2016 RPE_RS24295 9014cb9b92a9f08db69345802501f603 723 Pfam PF08448 PAS fold 175 289 1.0E-9 T 23-04-2016 IPR013656 PAS fold-4 RPE_RS24295 9014cb9b92a9f08db69345802501f603 723 Pfam PF08448 PAS fold 53 159 5.6E-9 T 23-04-2016 IPR013656 PAS fold-4 RPE_RS24295 9014cb9b92a9f08db69345802501f603 723 Pfam PF00512 His Kinase A (phospho-acceptor) domain 343 409 7.0E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS24295 9014cb9b92a9f08db69345802501f603 723 Gene3D G3DSA:1.10.287.130 336 407 1.9E-5 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS24295 9014cb9b92a9f08db69345802501f603 723 SUPERFAMILY SSF55874 401 571 2.13E-35 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS24295 9014cb9b92a9f08db69345802501f603 723 Gene3D G3DSA:3.30.450.20 45 162 2.7E-12 T 23-04-2016 RPE_RS24295 9014cb9b92a9f08db69345802501f603 723 PRINTS PR00344 Bacterial sensor protein C-terminal signature 557 570 1.4E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS24295 9014cb9b92a9f08db69345802501f603 723 PRINTS PR00344 Bacterial sensor protein C-terminal signature 520 530 1.4E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS24295 9014cb9b92a9f08db69345802501f603 723 PRINTS PR00344 Bacterial sensor protein C-terminal signature 502 516 1.4E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS24295 9014cb9b92a9f08db69345802501f603 723 PRINTS PR00344 Bacterial sensor protein C-terminal signature 533 551 1.4E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS24295 9014cb9b92a9f08db69345802501f603 723 Pfam PF00072 Response regulator receiver domain 598 706 5.1E-22 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS24295 9014cb9b92a9f08db69345802501f603 723 SUPERFAMILY SSF47384 330 408 4.32E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS24295 9014cb9b92a9f08db69345802501f603 723 PANTHER PTHR24423 43 303 4.2E-171 T 23-04-2016 RPE_RS24295 9014cb9b92a9f08db69345802501f603 723 PANTHER PTHR24423 338 710 4.2E-171 T 23-04-2016 RPE_RS24295 9014cb9b92a9f08db69345802501f603 723 Gene3D G3DSA:3.30.450.20 163 288 8.2E-17 T 23-04-2016 RPE_RS24295 9014cb9b92a9f08db69345802501f603 723 SUPERFAMILY SSF55785 61 164 9.9E-6 T 23-04-2016 IPR000014 PAS domain RPE_RS24295 9014cb9b92a9f08db69345802501f603 723 SMART SM00448 596 706 6.4E-27 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS24295 9014cb9b92a9f08db69345802501f603 723 SUPERFAMILY SSF52172 596 711 7.68E-32 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS24295 9014cb9b92a9f08db69345802501f603 723 Gene3D G3DSA:3.40.50.2300 595 712 3.3E-34 T 23-04-2016 RPE_RS12000 c5427208ef5895f35c44bbd69a9d75f4 392 SUPERFAMILY SSF51905 329 388 2.02E-31 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS12000 c5427208ef5895f35c44bbd69a9d75f4 392 SUPERFAMILY SSF51905 1 178 2.02E-31 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS12000 c5427208ef5895f35c44bbd69a9d75f4 392 PANTHER PTHR10617 322 392 4.8E-39 T 23-04-2016 RPE_RS12000 c5427208ef5895f35c44bbd69a9d75f4 392 PANTHER PTHR10617 1 285 4.8E-39 T 23-04-2016 RPE_RS12000 c5427208ef5895f35c44bbd69a9d75f4 392 Pfam PF03486 HI0933-like protein 1 383 1.5E-101 T 23-04-2016 RPE_RS12000 c5427208ef5895f35c44bbd69a9d75f4 392 TIGRFAM TIGR03862 flavo_PP4765: flavoprotein, TIGR03862 family 11 389 1.0E-155 T 23-04-2016 IPR022460 Conserved hyptotheical protein CHP03862, flavoprotein, PP4765 RPE_RS12000 c5427208ef5895f35c44bbd69a9d75f4 392 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 1 383 5.3E-79 T 23-04-2016 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like RPE_RS12000 c5427208ef5895f35c44bbd69a9d75f4 392 SUPERFAMILY SSF160996 180 329 7.98E-14 T 23-04-2016 RPE_RS12000 c5427208ef5895f35c44bbd69a9d75f4 392 PANTHER PTHR10617:SF103 322 392 4.8E-39 T 23-04-2016 RPE_RS12000 c5427208ef5895f35c44bbd69a9d75f4 392 PANTHER PTHR10617:SF103 1 285 4.8E-39 T 23-04-2016 RPE_RS12000 c5427208ef5895f35c44bbd69a9d75f4 392 Gene3D G3DSA:3.50.50.60 1 174 9.1E-24 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS12000 c5427208ef5895f35c44bbd69a9d75f4 392 Gene3D G3DSA:3.50.50.60 331 387 9.1E-24 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS16880 3ef915be827ed8692c1e334882353562 308 PANTHER PTHR31752 1 6 9.4E-39 T 23-04-2016 RPE_RS16880 3ef915be827ed8692c1e334882353562 308 PANTHER PTHR31752 123 307 9.4E-39 T 23-04-2016 RPE_RS16880 3ef915be827ed8692c1e334882353562 308 PANTHER PTHR31752:SF13 1 6 9.4E-39 T 23-04-2016 RPE_RS16880 3ef915be827ed8692c1e334882353562 308 PANTHER PTHR31752:SF13 123 307 9.4E-39 T 23-04-2016 RPE_RS16880 3ef915be827ed8692c1e334882353562 308 Pfam PF03547 Membrane transport protein 164 304 1.2E-12 T 23-04-2016 IPR004776 Auxin efflux carrier GO:0016021|GO:0055085 RPE_RS13835 f08c1c77636899af4fa78232ecd36a3e 398 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 268 283 - T 23-04-2016 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 RPE_RS13835 f08c1c77636899af4fa78232ecd36a3e 398 Gene3D G3DSA:3.30.1330.50 233 388 4.7E-65 T 23-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 RPE_RS13835 f08c1c77636899af4fa78232ecd36a3e 398 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 235 387 1.7E-59 T 23-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 RPE_RS13835 f08c1c77636899af4fa78232ecd36a3e 398 PANTHER PTHR32125 246 389 2.7E-63 T 23-04-2016 RPE_RS13835 f08c1c77636899af4fa78232ecd36a3e 398 PANTHER PTHR32125 1 74 2.7E-63 T 23-04-2016 RPE_RS13835 f08c1c77636899af4fa78232ecd36a3e 398 Hamap MF_01520 Bifunctional enzyme IspD/IspF [ispDF]. 5 390 43.134 T 23-04-2016 IPR026596 Bifunctional enzyme IspD/IspF KEGG: 00900+4.6.1.12+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056|UniPathway: UPA00056 RPE_RS13835 f08c1c77636899af4fa78232ecd36a3e 398 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 103 110 - T 23-04-2016 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 RPE_RS13835 f08c1c77636899af4fa78232ecd36a3e 398 Gene3D G3DSA:3.90.550.10 3 227 3.7E-64 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS13835 f08c1c77636899af4fa78232ecd36a3e 398 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 234 389 32.391 T 23-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 RPE_RS13835 f08c1c77636899af4fa78232ecd36a3e 398 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 8 225 1.9E-58 T 23-04-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 RPE_RS13835 f08c1c77636899af4fa78232ecd36a3e 398 SUPERFAMILY SSF53448 7 225 2.16E-53 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS13835 f08c1c77636899af4fa78232ecd36a3e 398 Pfam PF02542 YgbB family 234 387 6.8E-58 T 23-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 RPE_RS13835 f08c1c77636899af4fa78232ecd36a3e 398 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 6 234 28.525 T 23-04-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 RPE_RS13835 f08c1c77636899af4fa78232ecd36a3e 398 SUPERFAMILY SSF69765 234 388 4.84E-60 T 23-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 RPE_RS13835 f08c1c77636899af4fa78232ecd36a3e 398 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 9 223 8.3E-67 T 23-04-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 RPE_RS13835 f08c1c77636899af4fa78232ecd36a3e 398 PANTHER PTHR32125:SF5 246 389 2.7E-63 T 23-04-2016 RPE_RS13835 f08c1c77636899af4fa78232ecd36a3e 398 PANTHER PTHR32125:SF5 1 74 2.7E-63 T 23-04-2016 RPE_RS04545 cf7e37e17d242a1fb78adb6cd29aff7e 501 SUPERFAMILY SSF81296 406 500 9.52E-22 T 23-04-2016 IPR014756 Immunoglobulin E-set RPE_RS04545 cf7e37e17d242a1fb78adb6cd29aff7e 501 PANTHER PTHR30504:SF2 33 500 2.8E-241 T 23-04-2016 RPE_RS04545 cf7e37e17d242a1fb78adb6cd29aff7e 501 Gene3D G3DSA:2.70.98.10 32 404 6.5E-166 T 23-04-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 RPE_RS04545 cf7e37e17d242a1fb78adb6cd29aff7e 501 PANTHER PTHR30504 33 500 2.8E-241 T 23-04-2016 RPE_RS04545 cf7e37e17d242a1fb78adb6cd29aff7e 501 PIRSF PIRSF006281 3 501 1.8E-198 T 23-04-2016 IPR014438 Glucan biosynthesis, periplasmic, MdoG/D UniPathway: UPA00637 RPE_RS04545 cf7e37e17d242a1fb78adb6cd29aff7e 501 Pfam PF04349 Periplasmic glucan biosynthesis protein, MdoG 33 499 1.2E-194 T 23-04-2016 IPR007444 Glucan biosynthesis, periplasmic, MdoG C-terminal GO:0016051|GO:0042597 UniPathway: UPA00637 RPE_RS04545 cf7e37e17d242a1fb78adb6cd29aff7e 501 SUPERFAMILY SSF74650 33 403 3.77E-157 T 23-04-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 RPE_RS04545 cf7e37e17d242a1fb78adb6cd29aff7e 501 Hamap MF_01069 Glucans biosynthesis protein G [mdoG]. 7 501 55.894 T 23-04-2016 IPR023704 Glucan biosynthesis protein G UniPathway: UPA00637 RPE_RS04545 cf7e37e17d242a1fb78adb6cd29aff7e 501 Gene3D G3DSA:2.60.40.10 417 500 1.4E-23 T 23-04-2016 IPR013783 Immunoglobulin-like fold RPE_RS23520 afd235414fcc7ef60339dfb65f21ece8 447 PANTHER PTHR36842 19 447 1.3E-77 T 23-04-2016 RPE_RS23520 afd235414fcc7ef60339dfb65f21ece8 447 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 30 443 8.0E-143 T 23-04-2016 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 RPE_RS23520 afd235414fcc7ef60339dfb65f21ece8 447 SUPERFAMILY SSF52964 41 175 5.49E-42 T 23-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 RPE_RS23520 afd235414fcc7ef60339dfb65f21ece8 447 Hamap MF_00671 Protein TolB [tolB]. 21 442 31.883 T 23-04-2016 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 RPE_RS23520 afd235414fcc7ef60339dfb65f21ece8 447 Pfam PF07676 WD40-like Beta Propeller Repeat 296 331 8.9E-11 T 23-04-2016 IPR011659 WD40-like Beta Propeller RPE_RS23520 afd235414fcc7ef60339dfb65f21ece8 447 Pfam PF07676 WD40-like Beta Propeller Repeat 383 419 2.5E-6 T 23-04-2016 IPR011659 WD40-like Beta Propeller RPE_RS23520 afd235414fcc7ef60339dfb65f21ece8 447 Pfam PF07676 WD40-like Beta Propeller Repeat 255 287 9.6E-7 T 23-04-2016 IPR011659 WD40-like Beta Propeller RPE_RS23520 afd235414fcc7ef60339dfb65f21ece8 447 Pfam PF07676 WD40-like Beta Propeller Repeat 340 373 6.0E-6 T 23-04-2016 IPR011659 WD40-like Beta Propeller RPE_RS23520 afd235414fcc7ef60339dfb65f21ece8 447 Pfam PF04052 TolB amino-terminal domain 37 143 2.7E-32 T 23-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 RPE_RS23520 afd235414fcc7ef60339dfb65f21ece8 447 SUPERFAMILY SSF69304 168 444 1.44E-59 T 23-04-2016 RPE_RS23520 afd235414fcc7ef60339dfb65f21ece8 447 Gene3D G3DSA:2.130.10.10 166 444 2.2E-76 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RPE_RS23520 afd235414fcc7ef60339dfb65f21ece8 447 Gene3D G3DSA:3.40.50.10070 36 165 4.7E-51 T 23-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 RPE_RS08030 98dcc014f00d0411f71d9cf44e23d834 382 PANTHER PTHR13847:SF209 11 377 1.0E-177 T 23-04-2016 RPE_RS08030 98dcc014f00d0411f71d9cf44e23d834 382 Gene3D G3DSA:2.40.30.110 295 382 5.7E-22 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RPE_RS08030 98dcc014f00d0411f71d9cf44e23d834 382 PANTHER PTHR13847 11 377 1.0E-177 T 23-04-2016 RPE_RS08030 98dcc014f00d0411f71d9cf44e23d834 382 SUPERFAMILY SSF103025 11 293 2.2E-80 T 23-04-2016 RPE_RS08030 98dcc014f00d0411f71d9cf44e23d834 382 Gene3D G3DSA:3.30.1360.120 11 63 3.8E-53 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RPE_RS08030 98dcc014f00d0411f71d9cf44e23d834 382 Gene3D G3DSA:3.30.1360.120 155 242 3.8E-53 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RPE_RS08030 98dcc014f00d0411f71d9cf44e23d834 382 SUPERFAMILY SSF101790 286 382 3.43E-22 T 23-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain RPE_RS08030 98dcc014f00d0411f71d9cf44e23d834 382 PIRSF PIRSF006487 2 382 1.7E-68 T 23-04-2016 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RPE_RS08030 98dcc014f00d0411f71d9cf44e23d834 382 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 11 376 1.9E-94 T 23-04-2016 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RPE_RS08030 98dcc014f00d0411f71d9cf44e23d834 382 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 278 370 5.7E-20 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RPE_RS08030 98dcc014f00d0411f71d9cf44e23d834 382 Pfam PF01571 Aminomethyltransferase folate-binding domain 16 264 6.6E-79 T 23-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal RPE_RS08030 98dcc014f00d0411f71d9cf44e23d834 382 Gene3D G3DSA:3.30.70.1400 64 152 4.1E-27 T 23-04-2016 RPE_RS20810 94ec9534722bfb9e148be3f35ff33fd4 195 SUPERFAMILY SSF47616 76 192 3.34E-22 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RPE_RS20810 94ec9534722bfb9e148be3f35ff33fd4 195 Gene3D G3DSA:1.20.1050.10 84 190 1.2E-23 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RPE_RS20810 94ec9534722bfb9e148be3f35ff33fd4 195 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 75 1.6E-13 T 23-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RPE_RS20810 94ec9534722bfb9e148be3f35ff33fd4 195 Gene3D G3DSA:3.40.30.10 1 83 1.8E-23 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS20810 94ec9534722bfb9e148be3f35ff33fd4 195 PANTHER PTHR11260 1 192 1.1E-36 T 23-04-2016 RPE_RS20810 94ec9534722bfb9e148be3f35ff33fd4 195 Pfam PF00043 Glutathione S-transferase, C-terminal domain 123 183 9.5E-6 T 23-04-2016 IPR004046 Glutathione S-transferase, C-terminal RPE_RS20810 94ec9534722bfb9e148be3f35ff33fd4 195 SUPERFAMILY SSF52833 1 85 1.99E-21 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS05145 0cf78d2a43ecd5a003a90746b3d4341a 1649 Gene3D G3DSA:3.40.50.300 327 480 1.7E-4 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS05145 0cf78d2a43ecd5a003a90746b3d4341a 1649 SUPERFAMILY SSF48371 1223 1355 9.22E-6 T 23-04-2016 IPR016024 Armadillo-type fold GO:0005488 RPE_RS05145 0cf78d2a43ecd5a003a90746b3d4341a 1649 SUPERFAMILY SSF48371 1402 1437 9.22E-6 T 23-04-2016 IPR016024 Armadillo-type fold GO:0005488 RPE_RS05145 0cf78d2a43ecd5a003a90746b3d4341a 1649 Gene3D G3DSA:1.25.10.10 1200 1327 1.7E-4 T 23-04-2016 IPR011989 Armadillo-like helical RPE_RS05145 0cf78d2a43ecd5a003a90746b3d4341a 1649 SUPERFAMILY SSF52540 327 483 8.65E-7 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS08905 7c1882e911d6aec0889f3cdf6ec697c5 349 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS08905 7c1882e911d6aec0889f3cdf6ec697c5 349 Pfam PF12857 TOBE-like domain 286 340 1.3E-11 T 23-04-2016 IPR024765 TOBE-like domain KEGG: 00920+3.6.3.25 RPE_RS08905 7c1882e911d6aec0889f3cdf6ec697c5 349 SMART SM00382 27 214 1.8E-18 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS08905 7c1882e911d6aec0889f3cdf6ec697c5 349 PANTHER PTHR24220 4 310 7.6E-146 T 23-04-2016 RPE_RS08905 7c1882e911d6aec0889f3cdf6ec697c5 349 PANTHER PTHR24220:SF123 4 310 7.6E-146 T 23-04-2016 RPE_RS08905 7c1882e911d6aec0889f3cdf6ec697c5 349 SUPERFAMILY SSF52540 3 240 4.78E-85 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS08905 7c1882e911d6aec0889f3cdf6ec697c5 349 Gene3D G3DSA:3.40.50.300 3 239 2.0E-80 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS08905 7c1882e911d6aec0889f3cdf6ec697c5 349 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 241 4.3E-117 T 23-04-2016 IPR005666 Sulphate transport system permease protein 1 GO:0006810|GO:0016020|GO:0042626 KEGG: 00920+3.6.3.25 RPE_RS08905 7c1882e911d6aec0889f3cdf6ec697c5 349 Pfam PF00005 ABC transporter 18 164 7.3E-35 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS08905 7c1882e911d6aec0889f3cdf6ec697c5 349 SUPERFAMILY SSF50331 243 345 4.08E-7 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RPE_RS12615 1452e6b6c3ddb92a70e542a916c6d5a1 1047 SUPERFAMILY SSF82693 138 183 6.45E-24 T 23-04-2016 RPE_RS12615 1452e6b6c3ddb92a70e542a916c6d5a1 1047 SUPERFAMILY SSF82693 278 334 6.45E-24 T 23-04-2016 RPE_RS12615 1452e6b6c3ddb92a70e542a916c6d5a1 1047 Gene3D G3DSA:3.30.2090.10 184 279 4.5E-23 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS12615 1452e6b6c3ddb92a70e542a916c6d5a1 1047 Gene3D G3DSA:3.30.2090.10 726 815 2.5E-20 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS12615 1452e6b6c3ddb92a70e542a916c6d5a1 1047 SUPERFAMILY SSF82693 40 132 1.74E-26 T 23-04-2016 RPE_RS12615 1452e6b6c3ddb92a70e542a916c6d5a1 1047 PRINTS PR00702 Acriflavin resistance protein family signature 367 388 1.7E-82 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS12615 1452e6b6c3ddb92a70e542a916c6d5a1 1047 PRINTS PR00702 Acriflavin resistance protein family signature 624 638 1.7E-82 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS12615 1452e6b6c3ddb92a70e542a916c6d5a1 1047 PRINTS PR00702 Acriflavin resistance protein family signature 554 571 1.7E-82 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS12615 1452e6b6c3ddb92a70e542a916c6d5a1 1047 PRINTS PR00702 Acriflavin resistance protein family signature 448 471 1.7E-82 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS12615 1452e6b6c3ddb92a70e542a916c6d5a1 1047 PRINTS PR00702 Acriflavin resistance protein family signature 395 419 1.7E-82 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS12615 1452e6b6c3ddb92a70e542a916c6d5a1 1047 PRINTS PR00702 Acriflavin resistance protein family signature 473 496 1.7E-82 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS12615 1452e6b6c3ddb92a70e542a916c6d5a1 1047 PRINTS PR00702 Acriflavin resistance protein family signature 37 55 1.7E-82 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS12615 1452e6b6c3ddb92a70e542a916c6d5a1 1047 PRINTS PR00702 Acriflavin resistance protein family signature 340 363 1.7E-82 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS12615 1452e6b6c3ddb92a70e542a916c6d5a1 1047 PRINTS PR00702 Acriflavin resistance protein family signature 9 33 1.7E-82 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS12615 1452e6b6c3ddb92a70e542a916c6d5a1 1047 Gene3D G3DSA:3.30.70.1430 40 140 1.2E-31 T 23-04-2016 RPE_RS12615 1452e6b6c3ddb92a70e542a916c6d5a1 1047 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 2 1044 0.0 T 23-04-2016 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 RPE_RS12615 1452e6b6c3ddb92a70e542a916c6d5a1 1047 PANTHER PTHR32063 1 1033 0.0 T 23-04-2016 RPE_RS12615 1452e6b6c3ddb92a70e542a916c6d5a1 1047 Gene3D G3DSA:1.10.3850.10 284 501 4.8E-54 T 23-04-2016 RPE_RS12615 1452e6b6c3ddb92a70e542a916c6d5a1 1047 Gene3D G3DSA:1.10.3850.10 820 1032 5.7E-55 T 23-04-2016 RPE_RS12615 1452e6b6c3ddb92a70e542a916c6d5a1 1047 SUPERFAMILY SSF82693 812 861 4.03E-20 T 23-04-2016 RPE_RS12615 1452e6b6c3ddb92a70e542a916c6d5a1 1047 SUPERFAMILY SSF82693 676 725 4.03E-20 T 23-04-2016 RPE_RS12615 1452e6b6c3ddb92a70e542a916c6d5a1 1047 SUPERFAMILY SSF82866 835 1031 1.07E-45 T 23-04-2016 RPE_RS12615 1452e6b6c3ddb92a70e542a916c6d5a1 1047 Pfam PF00873 AcrB/AcrD/AcrF family 2 1030 0.0 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS12615 1452e6b6c3ddb92a70e542a916c6d5a1 1047 SUPERFAMILY SSF82714 184 275 4.71E-17 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS12615 1452e6b6c3ddb92a70e542a916c6d5a1 1047 PANTHER PTHR32063:SF27 1 1033 0.0 T 23-04-2016 RPE_RS12615 1452e6b6c3ddb92a70e542a916c6d5a1 1047 SUPERFAMILY SSF82714 726 811 2.49E-18 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS12615 1452e6b6c3ddb92a70e542a916c6d5a1 1047 Gene3D G3DSA:3.30.70.1430 569 674 8.0E-23 T 23-04-2016 RPE_RS12615 1452e6b6c3ddb92a70e542a916c6d5a1 1047 SUPERFAMILY SSF82693 567 674 1.05E-22 T 23-04-2016 RPE_RS12615 1452e6b6c3ddb92a70e542a916c6d5a1 1047 SUPERFAMILY SSF82866 300 501 8.63E-45 T 23-04-2016 RPE_RS01910 a9b01563d5d06863578cad12103d7b56 144 PANTHER PTHR40255 4 144 1.4E-51 T 23-04-2016 RPE_RS01910 a9b01563d5d06863578cad12103d7b56 144 PIRSF PIRSF004638 1 144 1.4E-57 T 23-04-2016 IPR005265 Uncharacterised protein family UPF0093 RPE_RS01910 a9b01563d5d06863578cad12103d7b56 144 Pfam PF03653 Uncharacterised protein family (UPF0093) 4 144 5.4E-57 T 23-04-2016 IPR005265 Uncharacterised protein family UPF0093 RPE_RS01910 a9b01563d5d06863578cad12103d7b56 144 TIGRFAM TIGR00701 TIGR00701: TIGR00701 family protein 6 144 5.9E-48 T 23-04-2016 IPR014351 Conserved hypothetical protein CHP00701 RPE_RS07525 a74fa1ead59c355d92059ebf8e5d009d 490 Pfam PF03734 L,D-transpeptidase catalytic domain 48 154 1.7E-19 T 23-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 RPE_RS07525 a74fa1ead59c355d92059ebf8e5d009d 490 PANTHER PTHR30582:SF2 43 235 1.7E-55 T 23-04-2016 RPE_RS07525 a74fa1ead59c355d92059ebf8e5d009d 490 Gene3D G3DSA:2.40.440.10 48 154 7.5E-22 T 23-04-2016 RPE_RS07525 a74fa1ead59c355d92059ebf8e5d009d 490 SUPERFAMILY SSF141523 44 154 9.42E-29 T 23-04-2016 RPE_RS07525 a74fa1ead59c355d92059ebf8e5d009d 490 PANTHER PTHR30582 43 235 1.7E-55 T 23-04-2016 RPE_RS19425 14168cdb4b1d075fd79c8cd71ba5a785 275 ProSitePatterns PS00692 NifH/frxC family signature 2. 125 138 - T 23-04-2016 IPR030655 NifH/chlL conserved site RPE_RS19425 14168cdb4b1d075fd79c8cd71ba5a785 275 PANTHER PTHR13696 1 259 3.3E-142 T 23-04-2016 RPE_RS19425 14168cdb4b1d075fd79c8cd71ba5a785 275 PRINTS PR00091 Nitrogenase component II signature 124 139 5.2E-35 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RPE_RS19425 14168cdb4b1d075fd79c8cd71ba5a785 275 PRINTS PR00091 Nitrogenase component II signature 85 99 5.2E-35 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RPE_RS19425 14168cdb4b1d075fd79c8cd71ba5a785 275 PRINTS PR00091 Nitrogenase component II signature 31 46 5.2E-35 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RPE_RS19425 14168cdb4b1d075fd79c8cd71ba5a785 275 PRINTS PR00091 Nitrogenase component II signature 8 21 5.2E-35 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RPE_RS19425 14168cdb4b1d075fd79c8cd71ba5a785 275 TIGRFAM TIGR01287 nifH: nitrogenase iron protein 3 274 1.6E-139 T 23-04-2016 IPR005977 Nitrogenase iron protein NifH GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 RPE_RS19425 14168cdb4b1d075fd79c8cd71ba5a785 275 Pfam PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 3 274 1.3E-130 T 23-04-2016 RPE_RS19425 14168cdb4b1d075fd79c8cd71ba5a785 275 PANTHER PTHR13696:SF5 1 259 3.3E-142 T 23-04-2016 RPE_RS19425 14168cdb4b1d075fd79c8cd71ba5a785 275 ProSitePatterns PS00746 NifH/frxC family signature 1. 87 99 - T 23-04-2016 IPR030655 NifH/chlL conserved site RPE_RS19425 14168cdb4b1d075fd79c8cd71ba5a785 275 Gene3D G3DSA:3.40.50.300 3 270 3.7E-72 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS19425 14168cdb4b1d075fd79c8cd71ba5a785 275 SUPERFAMILY SSF52540 3 268 2.81E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS19425 14168cdb4b1d075fd79c8cd71ba5a785 275 PIRSF PIRSF000363 1 275 1.3E-121 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RPE_RS19425 14168cdb4b1d075fd79c8cd71ba5a785 275 Hamap MF_00533 Nitrogenase iron protein [nifH]. 2 275 53.043 T 23-04-2016 IPR005977 Nitrogenase iron protein NifH GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 RPE_RS18015 e6d636770ac689eda3db9d11c741f83b 1400 Gene3D G3DSA:2.40.40.20 419 491 2.4E-37 T 23-04-2016 RPE_RS18015 e6d636770ac689eda3db9d11c741f83b 1400 Gene3D G3DSA:2.40.40.20 351 378 2.4E-37 T 23-04-2016 RPE_RS18015 e6d636770ac689eda3db9d11c741f83b 1400 Pfam PF04983 RNA polymerase Rpb1, domain 3 491 644 5.6E-22 T 23-04-2016 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RPE_RS18015 e6d636770ac689eda3db9d11c741f83b 1400 PANTHER PTHR19376:SF32 1171 1256 0.0 T 23-04-2016 RPE_RS18015 e6d636770ac689eda3db9d11c741f83b 1400 PANTHER PTHR19376:SF32 5 1150 0.0 T 23-04-2016 RPE_RS18015 e6d636770ac689eda3db9d11c741f83b 1400 PANTHER PTHR19376:SF32 1297 1357 0.0 T 23-04-2016 RPE_RS18015 e6d636770ac689eda3db9d11c741f83b 1400 Pfam PF00623 RNA polymerase Rpb1, domain 2 394 487 8.0E-27 T 23-04-2016 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RPE_RS18015 e6d636770ac689eda3db9d11c741f83b 1400 Pfam PF00623 RNA polymerase Rpb1, domain 2 346 400 1.7E-8 T 23-04-2016 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RPE_RS18015 e6d636770ac689eda3db9d11c741f83b 1400 PANTHER PTHR19376 1171 1256 0.0 T 23-04-2016 RPE_RS18015 e6d636770ac689eda3db9d11c741f83b 1400 PANTHER PTHR19376 5 1150 0.0 T 23-04-2016 RPE_RS18015 e6d636770ac689eda3db9d11c741f83b 1400 PANTHER PTHR19376 1297 1357 0.0 T 23-04-2016 RPE_RS18015 e6d636770ac689eda3db9d11c741f83b 1400 SMART SM00663 237 516 4.4E-182 T 23-04-2016 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RPE_RS18015 e6d636770ac689eda3db9d11c741f83b 1400 SUPERFAMILY SSF64484 17 939 0.0 T 23-04-2016 RPE_RS18015 e6d636770ac689eda3db9d11c741f83b 1400 SUPERFAMILY SSF64484 1126 1357 0.0 T 23-04-2016 RPE_RS18015 e6d636770ac689eda3db9d11c741f83b 1400 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 16 1370 10.332 T 23-04-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RPE_RS18015 e6d636770ac689eda3db9d11c741f83b 1400 Gene3D G3DSA:2.40.50.100 1148 1202 6.7E-9 T 23-04-2016 RPE_RS18015 e6d636770ac689eda3db9d11c741f83b 1400 Gene3D G3DSA:2.40.50.100 976 1012 7.6E-4 T 23-04-2016 RPE_RS18015 e6d636770ac689eda3db9d11c741f83b 1400 Pfam PF04998 RNA polymerase Rpb1, domain 5 762 1309 6.0E-71 T 23-04-2016 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RPE_RS18015 e6d636770ac689eda3db9d11c741f83b 1400 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 20 1029 0.0 T 23-04-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RPE_RS18015 e6d636770ac689eda3db9d11c741f83b 1400 Pfam PF04997 RNA polymerase Rpb1, domain 1 18 344 8.1E-90 T 23-04-2016 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RPE_RS18015 e6d636770ac689eda3db9d11c741f83b 1400 Pfam PF05000 RNA polymerase Rpb1, domain 4 673 758 9.0E-17 T 23-04-2016 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RPE_RS04560 cf8d14ef013535793946a32eabd57958 1052 Gene3D G3DSA:1.20.1640.10 301 496 3.2E-52 T 23-04-2016 RPE_RS04560 cf8d14ef013535793946a32eabd57958 1052 PANTHER PTHR32063 3 1048 0.0 T 23-04-2016 RPE_RS04560 cf8d14ef013535793946a32eabd57958 1052 SUPERFAMILY SSF82693 547 641 1.48E-9 T 23-04-2016 RPE_RS04560 cf8d14ef013535793946a32eabd57958 1052 Gene3D G3DSA:3.30.2090.10 690 783 7.3E-7 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS04560 cf8d14ef013535793946a32eabd57958 1052 SUPERFAMILY SSF82693 138 183 1.33E-15 T 23-04-2016 RPE_RS04560 cf8d14ef013535793946a32eabd57958 1052 SUPERFAMILY SSF82693 269 314 1.33E-15 T 23-04-2016 RPE_RS04560 cf8d14ef013535793946a32eabd57958 1052 SUPERFAMILY SSF82866 292 491 1.96E-42 T 23-04-2016 RPE_RS04560 cf8d14ef013535793946a32eabd57958 1052 Gene3D G3DSA:3.30.2090.10 184 266 2.9E-8 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS04560 cf8d14ef013535793946a32eabd57958 1052 Pfam PF00873 AcrB/AcrD/AcrF family 7 1000 2.8E-223 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS04560 cf8d14ef013535793946a32eabd57958 1052 Gene3D G3DSA:1.10.3850.10 786 1001 1.8E-54 T 23-04-2016 RPE_RS04560 cf8d14ef013535793946a32eabd57958 1052 Gene3D G3DSA:3.30.70.1320 143 180 6.0E-11 T 23-04-2016 RPE_RS04560 cf8d14ef013535793946a32eabd57958 1052 Gene3D G3DSA:3.30.70.1320 271 300 6.0E-11 T 23-04-2016 RPE_RS04560 cf8d14ef013535793946a32eabd57958 1052 SUPERFAMILY SSF82693 43 134 3.66E-21 T 23-04-2016 RPE_RS04560 cf8d14ef013535793946a32eabd57958 1052 Gene3D G3DSA:3.30.70.1430 43 141 3.4E-23 T 23-04-2016 RPE_RS04560 cf8d14ef013535793946a32eabd57958 1052 Gene3D G3DSA:3.30.70.1430 554 638 9.0E-6 T 23-04-2016 RPE_RS04560 cf8d14ef013535793946a32eabd57958 1052 SUPERFAMILY SSF82714 185 266 1.7E-10 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS04560 cf8d14ef013535793946a32eabd57958 1052 PANTHER PTHR32063:SF20 3 1048 0.0 T 23-04-2016 RPE_RS04560 cf8d14ef013535793946a32eabd57958 1052 SUPERFAMILY SSF82866 778 1002 7.19E-49 T 23-04-2016 RPE_RS04560 cf8d14ef013535793946a32eabd57958 1052 SUPERFAMILY SSF82714 691 780 9.81E-8 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS04560 cf8d14ef013535793946a32eabd57958 1052 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 5.6E-50 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS04560 cf8d14ef013535793946a32eabd57958 1052 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 5.6E-50 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS04560 cf8d14ef013535793946a32eabd57958 1052 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 5.6E-50 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS04560 cf8d14ef013535793946a32eabd57958 1052 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 5.6E-50 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS04560 cf8d14ef013535793946a32eabd57958 1052 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 5.6E-50 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS04560 cf8d14ef013535793946a32eabd57958 1052 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 5.6E-50 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS04560 cf8d14ef013535793946a32eabd57958 1052 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 5.6E-50 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS04560 cf8d14ef013535793946a32eabd57958 1052 PRINTS PR00702 Acriflavin resistance protein family signature 534 551 5.6E-50 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS01790 b131f06154f7ec07112f16a8b209405c 315 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 36 254 35.621 T 23-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RPE_RS01790 b131f06154f7ec07112f16a8b209405c 315 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 114 125 - T 23-04-2016 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RPE_RS01790 b131f06154f7ec07112f16a8b209405c 315 PANTHER PTHR21091 37 267 1.5E-78 T 23-04-2016 RPE_RS01790 b131f06154f7ec07112f16a8b209405c 315 SUPERFAMILY SSF53790 35 252 8.24E-78 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RPE_RS01790 b131f06154f7ec07112f16a8b209405c 315 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 37 236 5.8E-31 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RPE_RS01790 b131f06154f7ec07112f16a8b209405c 315 PANTHER PTHR21091:SF18 37 267 1.5E-78 T 23-04-2016 RPE_RS01790 b131f06154f7ec07112f16a8b209405c 315 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 37 303 1.2E-71 T 23-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RPE_RS01790 b131f06154f7ec07112f16a8b209405c 315 Gene3D G3DSA:3.30.950.10 144 254 2.9E-38 T 23-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 RPE_RS01790 b131f06154f7ec07112f16a8b209405c 315 Gene3D G3DSA:3.40.1010.10 37 143 8.1E-13 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 RPE_RS01790 b131f06154f7ec07112f16a8b209405c 315 PIRSF PIRSF005917 27 308 1.3E-98 T 23-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RPE_RS14225 11c3d6fb6bf8a23a42ca2cc656c6865d 46 Pfam PF00556 Antenna complex alpha/beta subunit 12 45 7.6E-9 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS14225 11c3d6fb6bf8a23a42ca2cc656c6865d 46 ProSitePatterns PS00969 Antenna complexes beta subunits signature. 12 43 - T 23-04-2016 IPR023623 Antenna complex, beta subunit, conserved site RPE_RS14225 11c3d6fb6bf8a23a42ca2cc656c6865d 46 PRINTS PR00674 Light harvesting protein B chain signature 27 44 1.6E-13 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS14225 11c3d6fb6bf8a23a42ca2cc656c6865d 46 PRINTS PR00674 Light harvesting protein B chain signature 7 27 1.6E-13 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS14225 11c3d6fb6bf8a23a42ca2cc656c6865d 46 SUPERFAMILY SSF56918 3 45 1.52E-14 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS14225 11c3d6fb6bf8a23a42ca2cc656c6865d 46 PIRSF PIRSF002900 1 46 4.4E-17 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS14225 11c3d6fb6bf8a23a42ca2cc656c6865d 46 Gene3D G3DSA:1.20.5.250 6 45 4.2E-21 T 23-04-2016 RPE_RS16570 411b4d780d4b310b835bdc406d9236dc 418 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 178 352 2.9E-57 T 23-04-2016 IPR003770 Uncharacterised protein family UPF0755, YceG-like RPE_RS16570 411b4d780d4b310b835bdc406d9236dc 418 Gene3D G3DSA:3.30.160.60 326 361 1.3E-13 T 23-04-2016 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain GO:0003676 RPE_RS16570 411b4d780d4b310b835bdc406d9236dc 418 PANTHER PTHR30518:SF2 23 364 1.1E-88 T 23-04-2016 RPE_RS16570 411b4d780d4b310b835bdc406d9236dc 418 Pfam PF02618 YceG-like family 76 352 4.3E-81 T 23-04-2016 IPR003770 Uncharacterised protein family UPF0755, YceG-like RPE_RS16570 411b4d780d4b310b835bdc406d9236dc 418 PANTHER PTHR30518 23 364 1.1E-88 T 23-04-2016 RPE_RS23020 6b863d3cf6b23c202abcdddccd87c800 412 Gene3D G3DSA:1.20.120.20 205 279 4.8E-4 T 23-04-2016 RPE_RS23020 6b863d3cf6b23c202abcdddccd87c800 412 Gene3D G3DSA:1.20.120.20 119 164 4.8E-4 T 23-04-2016 RPE_RS23020 6b863d3cf6b23c202abcdddccd87c800 412 Gene3D G3DSA:1.20.120.20 16 44 4.8E-4 T 23-04-2016 RPE_RS23020 6b863d3cf6b23c202abcdddccd87c800 412 SUPERFAMILY SSF58113 139 289 4.32E-5 T 23-04-2016 RPE_RS23020 6b863d3cf6b23c202abcdddccd87c800 412 Pfam PF12277 Protein of unknown function (DUF3618) 6 34 6.5E-6 T 23-04-2016 IPR022062 Protein of unknown function DUF3618 RPE_RS04550 016542d3ea6f1adb13df6ad804e6078d 300 Gene3D G3DSA:2.40.50.100 69 140 3.7E-8 T 23-04-2016 RPE_RS04550 016542d3ea6f1adb13df6ad804e6078d 300 PANTHER PTHR30097 98 300 1.4E-33 T 23-04-2016 RPE_RS04550 016542d3ea6f1adb13df6ad804e6078d 300 SUPERFAMILY SSF51230 77 140 1.86E-5 T 23-04-2016 IPR011053 Single hybrid motif RPE_RS04550 016542d3ea6f1adb13df6ad804e6078d 300 Pfam PF13437 HlyD family secretion protein 111 203 1.4E-10 T 23-04-2016 RPE_RS04550 016542d3ea6f1adb13df6ad804e6078d 300 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 111 290 9.3E-30 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RPE_RS09930 54ddb49613ccff05a37068ade135bd18 534 Gene3D G3DSA:1.10.287.130 256 318 8.5E-17 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS09930 54ddb49613ccff05a37068ade135bd18 534 PRINTS PR00344 Bacterial sensor protein C-terminal signature 416 430 4.2E-10 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS09930 54ddb49613ccff05a37068ade135bd18 534 PRINTS PR00344 Bacterial sensor protein C-terminal signature 451 469 4.2E-10 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS09930 54ddb49613ccff05a37068ade135bd18 534 PRINTS PR00344 Bacterial sensor protein C-terminal signature 475 488 4.2E-10 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS09930 54ddb49613ccff05a37068ade135bd18 534 Pfam PF00512 His Kinase A (phospho-acceptor) domain 263 332 2.9E-18 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS09930 54ddb49613ccff05a37068ade135bd18 534 SUPERFAMILY SSF55874 321 488 2.49E-39 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS09930 54ddb49613ccff05a37068ade135bd18 534 Gene3D G3DSA:3.30.565.10 319 488 3.6E-35 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS09930 54ddb49613ccff05a37068ade135bd18 534 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 379 490 1.5E-21 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS09930 54ddb49613ccff05a37068ade135bd18 534 PANTHER PTHR24423:SF490 242 532 2.3E-89 T 23-04-2016 RPE_RS09930 54ddb49613ccff05a37068ade135bd18 534 SMART SM00387 378 491 3.7E-32 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS09930 54ddb49613ccff05a37068ade135bd18 534 SMART SM00388 263 332 9.5E-20 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS09930 54ddb49613ccff05a37068ade135bd18 534 PANTHER PTHR24423 242 532 2.3E-89 T 23-04-2016 RPE_RS09930 54ddb49613ccff05a37068ade135bd18 534 SUPERFAMILY SSF47384 252 333 8.44E-20 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS12080 088cf551948ef98d305aef18f60f53a1 166 PRINTS PR01837 MgtC/SapB protein signature 21 40 4.5E-26 T 23-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RPE_RS12080 088cf551948ef98d305aef18f60f53a1 166 PRINTS PR01837 MgtC/SapB protein signature 95 119 4.5E-26 T 23-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RPE_RS12080 088cf551948ef98d305aef18f60f53a1 166 PRINTS PR01837 MgtC/SapB protein signature 68 90 4.5E-26 T 23-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RPE_RS12080 088cf551948ef98d305aef18f60f53a1 166 PRINTS PR01837 MgtC/SapB protein signature 40 58 4.5E-26 T 23-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RPE_RS12080 088cf551948ef98d305aef18f60f53a1 166 Pfam PF02308 MgtC family 18 140 5.3E-29 T 23-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RPE_RS12080 088cf551948ef98d305aef18f60f53a1 166 PANTHER PTHR33778 18 142 2.0E-24 T 23-04-2016 RPE_RS18055 1ed64d9cb09edca412c0882f0cbf3054 316 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 283 5.5E-47 T 23-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RPE_RS18055 1ed64d9cb09edca412c0882f0cbf3054 316 SUPERFAMILY SSF52283 4 135 1.17E-27 T 23-04-2016 RPE_RS18055 1ed64d9cb09edca412c0882f0cbf3054 316 Gene3D G3DSA:3.40.50.720 114 284 7.6E-53 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS18055 1ed64d9cb09edca412c0882f0cbf3054 316 SUPERFAMILY SSF51735 99 284 1.49E-50 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS18055 1ed64d9cb09edca412c0882f0cbf3054 316 PANTHER PTHR10996 4 314 5.3E-111 T 23-04-2016 RPE_RS18055 1ed64d9cb09edca412c0882f0cbf3054 316 PANTHER PTHR10996:SF152 4 314 5.3E-111 T 23-04-2016 RPE_RS18055 1ed64d9cb09edca412c0882f0cbf3054 316 Gene3D G3DSA:3.40.50.720 4 113 1.0E-27 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS18055 1ed64d9cb09edca412c0882f0cbf3054 316 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 5 314 4.2E-22 T 23-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 RPE_RS00655 40d8f77e051e3a5e6b6a81baff06f4eb 1060 SMART SM00091 411 482 22.0 T 23-04-2016 IPR000014 PAS domain RPE_RS00655 40d8f77e051e3a5e6b6a81baff06f4eb 1060 SMART SM00091 543 610 8.8E-7 T 23-04-2016 IPR000014 PAS domain RPE_RS00655 40d8f77e051e3a5e6b6a81baff06f4eb 1060 Gene3D G3DSA:3.30.450.20 411 535 4.1E-12 T 23-04-2016 RPE_RS00655 40d8f77e051e3a5e6b6a81baff06f4eb 1060 SMART SM00448 926 1039 4.6E-14 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS00655 40d8f77e051e3a5e6b6a81baff06f4eb 1060 Pfam PF00672 HAMP domain 327 393 9.1E-11 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS00655 40d8f77e051e3a5e6b6a81baff06f4eb 1060 Gene3D G3DSA:3.40.50.2300 925 1045 1.1E-27 T 23-04-2016 RPE_RS00655 40d8f77e051e3a5e6b6a81baff06f4eb 1060 Gene3D G3DSA:1.10.287.130 668 727 2.6E-4 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS00655 40d8f77e051e3a5e6b6a81baff06f4eb 1060 SUPERFAMILY SSF55785 528 658 2.44E-24 T 23-04-2016 IPR000014 PAS domain RPE_RS00655 40d8f77e051e3a5e6b6a81baff06f4eb 1060 PANTHER PTHR24423:SF438 401 1049 6.3E-201 T 23-04-2016 RPE_RS00655 40d8f77e051e3a5e6b6a81baff06f4eb 1060 SUPERFAMILY SSF47384 664 738 2.55E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS00655 40d8f77e051e3a5e6b6a81baff06f4eb 1060 SUPERFAMILY SSF55874 732 906 1.83E-38 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS00655 40d8f77e051e3a5e6b6a81baff06f4eb 1060 Pfam PF08448 PAS fold 417 532 2.4E-5 T 23-04-2016 IPR013656 PAS fold-4 RPE_RS00655 40d8f77e051e3a5e6b6a81baff06f4eb 1060 PANTHER PTHR24423 401 1049 6.3E-201 T 23-04-2016 RPE_RS00655 40d8f77e051e3a5e6b6a81baff06f4eb 1060 SUPERFAMILY SSF55785 422 540 2.27E-8 T 23-04-2016 IPR000014 PAS domain RPE_RS00655 40d8f77e051e3a5e6b6a81baff06f4eb 1060 Gene3D G3DSA:3.30.450.20 536 658 4.1E-24 T 23-04-2016 RPE_RS00655 40d8f77e051e3a5e6b6a81baff06f4eb 1060 Pfam PF00072 Response regulator receiver domain 928 1039 1.7E-13 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS00655 40d8f77e051e3a5e6b6a81baff06f4eb 1060 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 783 904 5.9E-17 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS00655 40d8f77e051e3a5e6b6a81baff06f4eb 1060 Pfam PF00989 PAS fold 546 648 5.9E-14 T 23-04-2016 IPR013767 PAS fold GO:0006355 RPE_RS00655 40d8f77e051e3a5e6b6a81baff06f4eb 1060 Gene3D G3DSA:3.30.450.20 94 219 1.5E-27 T 23-04-2016 RPE_RS00655 40d8f77e051e3a5e6b6a81baff06f4eb 1060 SMART SM00387 782 905 1.0E-27 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS00655 40d8f77e051e3a5e6b6a81baff06f4eb 1060 SUPERFAMILY SSF103190 42 219 2.62E-32 T 23-04-2016 IPR029151 Periplasmic sensor domain-like RPE_RS00655 40d8f77e051e3a5e6b6a81baff06f4eb 1060 SUPERFAMILY SSF52172 926 1046 4.55E-23 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS00655 40d8f77e051e3a5e6b6a81baff06f4eb 1060 Gene3D G3DSA:3.30.565.10 728 907 2.7E-36 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS00655 40d8f77e051e3a5e6b6a81baff06f4eb 1060 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 539 667 2.5E-17 T 23-04-2016 IPR000014 PAS domain RPE_RS00655 40d8f77e051e3a5e6b6a81baff06f4eb 1060 PRINTS PR00344 Bacterial sensor protein C-terminal signature 852 862 6.4E-18 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS00655 40d8f77e051e3a5e6b6a81baff06f4eb 1060 PRINTS PR00344 Bacterial sensor protein C-terminal signature 865 883 6.4E-18 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS00655 40d8f77e051e3a5e6b6a81baff06f4eb 1060 PRINTS PR00344 Bacterial sensor protein C-terminal signature 834 848 6.4E-18 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS00655 40d8f77e051e3a5e6b6a81baff06f4eb 1060 PRINTS PR00344 Bacterial sensor protein C-terminal signature 889 902 6.4E-18 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS00655 40d8f77e051e3a5e6b6a81baff06f4eb 1060 SMART SM00388 675 741 0.0043 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS07830 359ed9808acb328b7a0f8e34cef504e2 859 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 578 698 6.9E-20 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS07830 359ed9808acb328b7a0f8e34cef504e2 859 SMART SM00387 577 700 5.0E-28 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS07830 359ed9808acb328b7a0f8e34cef504e2 859 PRINTS PR00344 Bacterial sensor protein C-terminal signature 660 678 7.7E-20 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS07830 359ed9808acb328b7a0f8e34cef504e2 859 PRINTS PR00344 Bacterial sensor protein C-terminal signature 647 657 7.7E-20 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS07830 359ed9808acb328b7a0f8e34cef504e2 859 PRINTS PR00344 Bacterial sensor protein C-terminal signature 629 643 7.7E-20 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS07830 359ed9808acb328b7a0f8e34cef504e2 859 PRINTS PR00344 Bacterial sensor protein C-terminal signature 684 697 7.7E-20 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS07830 359ed9808acb328b7a0f8e34cef504e2 859 Pfam PF13426 PAS domain 99 201 0.043 T 23-04-2016 IPR000014 PAS domain RPE_RS07830 359ed9808acb328b7a0f8e34cef504e2 859 Pfam PF13188 PAS domain 221 256 0.3 T 23-04-2016 IPR000014 PAS domain RPE_RS07830 359ed9808acb328b7a0f8e34cef504e2 859 SUPERFAMILY SSF55785 91 201 2.44E-8 T 23-04-2016 IPR000014 PAS domain RPE_RS07830 359ed9808acb328b7a0f8e34cef504e2 859 SUPERFAMILY SSF55785 199 315 1.27E-7 T 23-04-2016 IPR000014 PAS domain RPE_RS07830 359ed9808acb328b7a0f8e34cef504e2 859 SUPERFAMILY SSF47384 463 533 4.12E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS07830 359ed9808acb328b7a0f8e34cef504e2 859 Gene3D G3DSA:3.30.450.20 91 200 1.9E-8 T 23-04-2016 RPE_RS07830 359ed9808acb328b7a0f8e34cef504e2 859 Pfam PF00072 Response regulator receiver domain 741 853 3.6E-21 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS07830 359ed9808acb328b7a0f8e34cef504e2 859 Gene3D G3DSA:3.30.450.20 201 318 2.1E-5 T 23-04-2016 RPE_RS07830 359ed9808acb328b7a0f8e34cef504e2 859 Pfam PF08448 PAS fold 347 456 2.7E-9 T 23-04-2016 IPR013656 PAS fold-4 RPE_RS07830 359ed9808acb328b7a0f8e34cef504e2 859 SMART SM00448 739 852 2.7E-27 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS07830 359ed9808acb328b7a0f8e34cef504e2 859 Gene3D G3DSA:1.10.287.130 465 522 2.4E-4 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS07830 359ed9808acb328b7a0f8e34cef504e2 859 SUPERFAMILY SSF55785 337 441 5.93E-5 T 23-04-2016 IPR000014 PAS domain RPE_RS07830 359ed9808acb328b7a0f8e34cef504e2 859 SMART SM00091 215 282 2.7 T 23-04-2016 IPR000014 PAS domain RPE_RS07830 359ed9808acb328b7a0f8e34cef504e2 859 SMART SM00091 341 408 100.0 T 23-04-2016 IPR000014 PAS domain RPE_RS07830 359ed9808acb328b7a0f8e34cef504e2 859 SMART SM00091 88 155 8.9 T 23-04-2016 IPR000014 PAS domain RPE_RS07830 359ed9808acb328b7a0f8e34cef504e2 859 PANTHER PTHR24423 89 218 1.1E-239 T 23-04-2016 RPE_RS07830 359ed9808acb328b7a0f8e34cef504e2 859 PANTHER PTHR24423 339 858 1.1E-239 T 23-04-2016 RPE_RS07830 359ed9808acb328b7a0f8e34cef504e2 859 SMART SM00388 470 536 1.2E-5 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS07830 359ed9808acb328b7a0f8e34cef504e2 859 Pfam PF00512 His Kinase A (phospho-acceptor) domain 472 534 1.7E-6 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS07830 359ed9808acb328b7a0f8e34cef504e2 859 SUPERFAMILY SSF55874 526 705 1.31E-40 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS07830 359ed9808acb328b7a0f8e34cef504e2 859 Gene3D G3DSA:3.30.450.20 337 440 1.8E-5 T 23-04-2016 RPE_RS07830 359ed9808acb328b7a0f8e34cef504e2 859 SUPERFAMILY SSF52172 739 856 1.85E-31 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS07830 359ed9808acb328b7a0f8e34cef504e2 859 Gene3D G3DSA:3.40.50.2300 738 856 3.0E-33 T 23-04-2016 RPE_RS07830 359ed9808acb328b7a0f8e34cef504e2 859 Gene3D G3DSA:3.30.565.10 523 702 7.6E-40 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS07830 359ed9808acb328b7a0f8e34cef504e2 859 PANTHER PTHR24423:SF379 89 218 1.1E-239 T 23-04-2016 RPE_RS07830 359ed9808acb328b7a0f8e34cef504e2 859 PANTHER PTHR24423:SF379 339 858 1.1E-239 T 23-04-2016 RPE_RS21150 97307c9a4165f183f88e23315bf3b2c4 389 PANTHER PTHR12526:SF373 66 380 4.2E-36 T 23-04-2016 RPE_RS21150 97307c9a4165f183f88e23315bf3b2c4 389 SUPERFAMILY SSF53756 17 381 1.57E-58 T 23-04-2016 RPE_RS21150 97307c9a4165f183f88e23315bf3b2c4 389 Pfam PF00534 Glycosyl transferases group 1 201 359 1.4E-28 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 RPE_RS21150 97307c9a4165f183f88e23315bf3b2c4 389 Gene3D G3DSA:3.40.50.2000 197 359 2.5E-24 T 23-04-2016 RPE_RS21150 97307c9a4165f183f88e23315bf3b2c4 389 Pfam PF13477 Glycosyl transferase 4-like 18 106 3.5E-10 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RPE_RS21150 97307c9a4165f183f88e23315bf3b2c4 389 PANTHER PTHR12526 66 380 4.2E-36 T 23-04-2016 RPE_RS10590 c0b7fe6ea48675c946c6dc3897663845 306 Gene3D G3DSA:3.90.78.10 231 303 5.6E-32 T 23-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RPE_RS10590 c0b7fe6ea48675c946c6dc3897663845 306 PANTHER PTHR21071:SF4 4 303 3.8E-118 T 23-04-2016 RPE_RS10590 c0b7fe6ea48675c946c6dc3897663845 306 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 27 303 5.1E-56 T 23-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RPE_RS10590 c0b7fe6ea48675c946c6dc3897663845 306 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 204 301 1.4E-29 T 23-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RPE_RS10590 c0b7fe6ea48675c946c6dc3897663845 306 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 306 99.719 T 23-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RPE_RS10590 c0b7fe6ea48675c946c6dc3897663845 306 Pfam PF01565 FAD binding domain 40 168 2.8E-15 T 23-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RPE_RS10590 c0b7fe6ea48675c946c6dc3897663845 306 Gene3D G3DSA:3.30.465.10 94 230 1.8E-37 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RPE_RS10590 c0b7fe6ea48675c946c6dc3897663845 306 SUPERFAMILY SSF56194 203 304 1.01E-38 T 23-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RPE_RS10590 c0b7fe6ea48675c946c6dc3897663845 306 Gene3D G3DSA:3.30.43.10 9 88 1.2E-15 T 23-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 RPE_RS10590 c0b7fe6ea48675c946c6dc3897663845 306 SUPERFAMILY SSF56176 26 212 1.78E-38 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RPE_RS10590 c0b7fe6ea48675c946c6dc3897663845 306 PANTHER PTHR21071 4 303 3.8E-118 T 23-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RPE_RS10165 fa4b1e3e6884d876a09c0ef5867cf21a 583 Pfam PF01935 Domain of unknown function DUF87 126 371 1.4E-47 T 23-04-2016 IPR002789 Helicase HerA, central domain RPE_RS10165 fa4b1e3e6884d876a09c0ef5867cf21a 583 PANTHER PTHR30121:SF1 9 554 4.2E-167 T 23-04-2016 RPE_RS10165 fa4b1e3e6884d876a09c0ef5867cf21a 583 SUPERFAMILY SSF52540 128 505 3.61E-38 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10165 fa4b1e3e6884d876a09c0ef5867cf21a 583 PANTHER PTHR30121 9 554 4.2E-167 T 23-04-2016 RPE_RS10165 fa4b1e3e6884d876a09c0ef5867cf21a 583 Gene3D G3DSA:3.40.50.300 140 211 2.1E-27 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10165 fa4b1e3e6884d876a09c0ef5867cf21a 583 Gene3D G3DSA:3.40.50.300 339 502 2.1E-27 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS07420 e92008d72efe72a344a619a72aec9f9b 2088 PANTHER PTHR18976:SF17 1251 1317 4.1E-284 T 23-04-2016 RPE_RS07420 e92008d72efe72a344a619a72aec9f9b 2088 PANTHER PTHR18976:SF17 1362 2061 4.1E-284 T 23-04-2016 RPE_RS07420 e92008d72efe72a344a619a72aec9f9b 2088 PANTHER PTHR18976:SF17 2 786 4.1E-284 T 23-04-2016 RPE_RS07420 e92008d72efe72a344a619a72aec9f9b 2088 PANTHER PTHR18976:SF17 875 1206 4.1E-284 T 23-04-2016 RPE_RS07420 e92008d72efe72a344a619a72aec9f9b 2088 Pfam PF01442 Apolipoprotein A1/A4/E domain 354 519 2.7E-7 T 23-04-2016 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: REACT_22258 RPE_RS07420 e92008d72efe72a344a619a72aec9f9b 2088 Pfam PF01442 Apolipoprotein A1/A4/E domain 985 1073 17.0 T 23-04-2016 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: REACT_22258 RPE_RS07420 e92008d72efe72a344a619a72aec9f9b 2088 Pfam PF01442 Apolipoprotein A1/A4/E domain 1293 1428 0.011 T 23-04-2016 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: REACT_22258 RPE_RS07420 e92008d72efe72a344a619a72aec9f9b 2088 Pfam PF01442 Apolipoprotein A1/A4/E domain 814 987 1.2E-7 T 23-04-2016 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: REACT_22258 RPE_RS07420 e92008d72efe72a344a619a72aec9f9b 2088 Pfam PF01442 Apolipoprotein A1/A4/E domain 914 1073 0.0036 T 23-04-2016 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: REACT_22258 RPE_RS07420 e92008d72efe72a344a619a72aec9f9b 2088 Pfam PF01442 Apolipoprotein A1/A4/E domain 268 414 0.0011 T 23-04-2016 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: REACT_22258 RPE_RS07420 e92008d72efe72a344a619a72aec9f9b 2088 Pfam PF01442 Apolipoprotein A1/A4/E domain 478 655 1.2E-10 T 23-04-2016 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: REACT_22258 RPE_RS07420 e92008d72efe72a344a619a72aec9f9b 2088 Pfam PF01442 Apolipoprotein A1/A4/E domain 640 809 7.6E-9 T 23-04-2016 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: REACT_22258 RPE_RS07420 e92008d72efe72a344a619a72aec9f9b 2088 Pfam PF01442 Apolipoprotein A1/A4/E domain 1680 1831 16.0 T 23-04-2016 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: REACT_22258 RPE_RS07420 e92008d72efe72a344a619a72aec9f9b 2088 Pfam PF01442 Apolipoprotein A1/A4/E domain 1429 1632 3.6E-17 T 23-04-2016 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: REACT_22258 RPE_RS07420 e92008d72efe72a344a619a72aec9f9b 2088 Pfam PF01442 Apolipoprotein A1/A4/E domain 1130 1295 7.4E-4 T 23-04-2016 IPR000074 Apolipoprotein A/E GO:0005576|GO:0006869|GO:0008289|GO:0042157 Reactome: REACT_22258 RPE_RS07420 e92008d72efe72a344a619a72aec9f9b 2088 SUPERFAMILY SSF58113 753 893 9.29E-6 T 23-04-2016 RPE_RS07420 e92008d72efe72a344a619a72aec9f9b 2088 PANTHER PTHR18976 1251 1317 4.1E-284 T 23-04-2016 RPE_RS07420 e92008d72efe72a344a619a72aec9f9b 2088 PANTHER PTHR18976 1362 2061 4.1E-284 T 23-04-2016 RPE_RS07420 e92008d72efe72a344a619a72aec9f9b 2088 PANTHER PTHR18976 2 786 4.1E-284 T 23-04-2016 RPE_RS07420 e92008d72efe72a344a619a72aec9f9b 2088 PANTHER PTHR18976 875 1206 4.1E-284 T 23-04-2016 RPE_RS07420 e92008d72efe72a344a619a72aec9f9b 2088 SUPERFAMILY SSF58113 457 642 2.62E-7 T 23-04-2016 RPE_RS07420 e92008d72efe72a344a619a72aec9f9b 2088 Gene3D G3DSA:1.20.120.20 688 828 3.0E-4 T 23-04-2016 RPE_RS07420 e92008d72efe72a344a619a72aec9f9b 2088 Gene3D G3DSA:1.20.120.20 463 558 7.2E-5 T 23-04-2016 RPE_RS07420 e92008d72efe72a344a619a72aec9f9b 2088 Gene3D G3DSA:1.20.120.20 384 412 7.2E-5 T 23-04-2016 RPE_RS03055 519351a097527a51567ce074e6a13fc5 260 SUPERFAMILY SSF52096 1 257 4.1E-75 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS03055 519351a097527a51567ce074e6a13fc5 260 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 256 3.9E-67 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RPE_RS03055 519351a097527a51567ce074e6a13fc5 260 Hamap MF_01934 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 1 260 41.661 T 23-04-2016 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837|UniPathway: UPA00079|UniPathway: UPA01057 RPE_RS03055 519351a097527a51567ce074e6a13fc5 260 Gene3D G3DSA:3.90.226.10 3 199 1.8E-61 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS03055 519351a097527a51567ce074e6a13fc5 260 PANTHER PTHR11941:SF20 3 255 1.2E-111 T 23-04-2016 RPE_RS03055 519351a097527a51567ce074e6a13fc5 260 Gene3D G3DSA:1.10.12.10 201 250 5.4E-17 T 23-04-2016 IPR014748 Crontonase, C-terminal RPE_RS03055 519351a097527a51567ce074e6a13fc5 260 PANTHER PTHR11941 3 255 1.2E-111 T 23-04-2016 RPE_RS03055 519351a097527a51567ce074e6a13fc5 260 TIGRFAM TIGR03210 badI: 2-ketocyclohexanecarboxyl-CoA hydrolase 3 258 6.4E-166 T 23-04-2016 IPR017623 2-ketocyclohexanecarboxyl-CoA hydrolase RPE_RS03055 519351a097527a51567ce074e6a13fc5 260 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 100 120 - T 23-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 RPE_RS02425 1d2eb4c4df711f2a022e4258a202bd67 344 Gene3D G3DSA:3.30.360.10 143 314 3.9E-80 T 23-04-2016 RPE_RS02425 1d2eb4c4df711f2a022e4258a202bd67 344 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 2 332 35.805 T 23-04-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RPE_RS02425 1d2eb4c4df711f2a022e4258a202bd67 344 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 4 117 8.2E-32 T 23-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RPE_RS02425 1d2eb4c4df711f2a022e4258a202bd67 344 Gene3D G3DSA:3.40.50.720 1 142 1.2E-62 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS02425 1d2eb4c4df711f2a022e4258a202bd67 344 PIRSF PIRSF000148 2 337 2.3E-127 T 23-04-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RPE_RS02425 1d2eb4c4df711f2a022e4258a202bd67 344 SUPERFAMILY SSF51735 3 157 5.88E-51 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS02425 1d2eb4c4df711f2a022e4258a202bd67 344 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 139 318 1.3E-53 T 23-04-2016 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RPE_RS02425 1d2eb4c4df711f2a022e4258a202bd67 344 SUPERFAMILY SSF55347 129 319 3.67E-75 T 23-04-2016 RPE_RS02425 1d2eb4c4df711f2a022e4258a202bd67 344 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 4 333 1.0E-144 T 23-04-2016 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RPE_RS02425 1d2eb4c4df711f2a022e4258a202bd67 344 PANTHER PTHR10174 65 340 3.6E-76 T 23-04-2016 RPE_RS02425 1d2eb4c4df711f2a022e4258a202bd67 344 PANTHER PTHR10174:SF2 65 340 3.6E-76 T 23-04-2016 RPE_RS02425 1d2eb4c4df711f2a022e4258a202bd67 344 SMART SM00859 4 119 4.1E-38 T 23-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RPE_RS16555 d611320317b8158402af645c1d681af2 338 Pfam PF14415 Domain of unknown function (DUF4424) 25 331 3.8E-107 T 23-04-2016 IPR025538 Domain of unknown function DUF4424 RPE_RS12770 34f85ce7bbd409c065fadf7862f6ffb8 232 Pfam PF00005 ABC transporter 30 178 2.3E-27 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS12770 34f85ce7bbd409c065fadf7862f6ffb8 232 PANTHER PTHR24220 12 226 3.7E-87 T 23-04-2016 RPE_RS12770 34f85ce7bbd409c065fadf7862f6ffb8 232 SMART SM00382 39 227 3.2E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS12770 34f85ce7bbd409c065fadf7862f6ffb8 232 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS12770 34f85ce7bbd409c065fadf7862f6ffb8 232 SUPERFAMILY SSF52540 11 231 5.84E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12770 34f85ce7bbd409c065fadf7862f6ffb8 232 PANTHER PTHR24220:SF111 12 226 3.7E-87 T 23-04-2016 RPE_RS12770 34f85ce7bbd409c065fadf7862f6ffb8 232 Gene3D G3DSA:3.40.50.300 10 230 2.6E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS11630 0b46aa4ecd3b4385bde50721f81399e6 176 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 91 124 7.6E-7 T 23-04-2016 IPR001451 Hexapeptide repeat RPE_RS11630 0b46aa4ecd3b4385bde50721f81399e6 176 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 18 47 0.0028 T 23-04-2016 IPR001451 Hexapeptide repeat RPE_RS11630 0b46aa4ecd3b4385bde50721f81399e6 176 PANTHER PTHR13061 15 174 1.6E-58 T 23-04-2016 RPE_RS11630 0b46aa4ecd3b4385bde50721f81399e6 176 SUPERFAMILY SSF51161 9 170 3.47E-45 T 23-04-2016 IPR011004 Trimeric LpxA-like RPE_RS11630 0b46aa4ecd3b4385bde50721f81399e6 176 Gene3D G3DSA:2.160.10.10 11 170 3.8E-44 T 23-04-2016 RPE_RS06390 a088a66b7fb7a20f810dd61901f357ff 299 PANTHER PTHR30151:SF7 21 295 1.1E-111 T 23-04-2016 RPE_RS06390 a088a66b7fb7a20f810dd61901f357ff 299 Gene3D G3DSA:1.10.3720.10 99 287 1.7E-19 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS06390 a088a66b7fb7a20f810dd61901f357ff 299 SUPERFAMILY SSF161098 99 284 2.75E-28 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS06390 a088a66b7fb7a20f810dd61901f357ff 299 PANTHER PTHR30151 21 295 1.1E-111 T 23-04-2016 RPE_RS06390 a088a66b7fb7a20f810dd61901f357ff 299 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 123 281 1.3E-24 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS06390 a088a66b7fb7a20f810dd61901f357ff 299 TIGRFAM TIGR01183 ntrB: nitrate ABC transporter, permease protein 87 286 6.7E-97 T 23-04-2016 IPR005889 Nitrate transport permease GO:0015112|GO:0015706|GO:0016021 RPE_RS23290 646b0ed510759f4488eacc7ace24571e 471 Pfam PF00529 HlyD membrane-fusion protein of T1SS 6 444 7.7E-10 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RPE_RS23290 646b0ed510759f4488eacc7ace24571e 471 PANTHER PTHR30097 52 470 4.4E-123 T 23-04-2016 RPE_RS23290 646b0ed510759f4488eacc7ace24571e 471 SUPERFAMILY SSF111369 200 385 4.45E-12 T 23-04-2016 RPE_RS23290 646b0ed510759f4488eacc7ace24571e 471 PANTHER PTHR30097:SF3 52 470 4.4E-123 T 23-04-2016 RPE_RS23290 646b0ed510759f4488eacc7ace24571e 471 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 276 451 4.5E-31 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RPE_RS23290 646b0ed510759f4488eacc7ace24571e 471 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 167 378 6.5E-66 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RPE_RS23290 646b0ed510759f4488eacc7ace24571e 471 Gene3D G3DSA:2.40.50.100 267 303 2.7E-5 T 23-04-2016 RPE_RS23290 646b0ed510759f4488eacc7ace24571e 471 Gene3D G3DSA:2.40.50.100 199 215 2.7E-5 T 23-04-2016 RPE_RS00215 c29f62f0fc0e7b2dbd8cb8d7394a4ce4 493 Pfam PF01546 Peptidase family M20/M25/M40 123 490 7.3E-38 T 23-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 RPE_RS00215 c29f62f0fc0e7b2dbd8cb8d7394a4ce4 493 SUPERFAMILY SSF55031 340 386 1.15E-9 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RPE_RS00215 c29f62f0fc0e7b2dbd8cb8d7394a4ce4 493 SUPERFAMILY SSF55031 248 291 1.15E-9 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RPE_RS00215 c29f62f0fc0e7b2dbd8cb8d7394a4ce4 493 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 121 130 - T 23-04-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 RPE_RS00215 c29f62f0fc0e7b2dbd8cb8d7394a4ce4 493 PANTHER PTHR11014 1 490 2.1E-152 T 23-04-2016 RPE_RS00215 c29f62f0fc0e7b2dbd8cb8d7394a4ce4 493 PANTHER PTHR11014:SF16 1 490 2.1E-152 T 23-04-2016 RPE_RS00215 c29f62f0fc0e7b2dbd8cb8d7394a4ce4 493 Pfam PF07687 Peptidase dimerisation domain 244 387 5.7E-15 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RPE_RS00215 c29f62f0fc0e7b2dbd8cb8d7394a4ce4 493 Gene3D G3DSA:3.30.70.360 257 295 5.8E-17 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RPE_RS00215 c29f62f0fc0e7b2dbd8cb8d7394a4ce4 493 Gene3D G3DSA:3.30.70.360 339 386 5.8E-17 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RPE_RS00215 c29f62f0fc0e7b2dbd8cb8d7394a4ce4 493 SUPERFAMILY SSF53187 403 490 9.14E-54 T 23-04-2016 RPE_RS00215 c29f62f0fc0e7b2dbd8cb8d7394a4ce4 493 SUPERFAMILY SSF53187 48 232 9.14E-54 T 23-04-2016 RPE_RS00215 c29f62f0fc0e7b2dbd8cb8d7394a4ce4 493 Gene3D G3DSA:3.40.630.10 428 490 6.0E-57 T 23-04-2016 RPE_RS00215 c29f62f0fc0e7b2dbd8cb8d7394a4ce4 493 Gene3D G3DSA:3.40.630.10 53 256 6.0E-57 T 23-04-2016 RPE_RS24215 5dac08f135405c83e8bccc352945f023 293 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 185 210 - T 23-04-2016 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 RPE_RS24215 5dac08f135405c83e8bccc352945f023 293 Gene3D G3DSA:3.40.50.720 4 190 1.7E-55 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS24215 5dac08f135405c83e8bccc352945f023 293 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 189 284 1.7E-33 T 23-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 RPE_RS24215 5dac08f135405c83e8bccc352945f023 293 PIRSF PIRSF000105 2 293 8.3E-85 T 23-04-2016 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 RPE_RS24215 5dac08f135405c83e8bccc352945f023 293 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 7 184 8.2E-61 T 23-04-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 RPE_RS24215 5dac08f135405c83e8bccc352945f023 293 SUPERFAMILY SSF51735 4 187 2.9E-56 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS24215 5dac08f135405c83e8bccc352945f023 293 SUPERFAMILY SSF48179 187 289 4.51E-34 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RPE_RS24215 5dac08f135405c83e8bccc352945f023 293 PANTHER PTHR23309 5 291 6.8E-142 T 23-04-2016 RPE_RS24215 5dac08f135405c83e8bccc352945f023 293 Gene3D G3DSA:1.10.1040.10 191 285 8.0E-36 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RPE_RS21490 1b0fff4ec9aa36205a5256b8202b99f0 190 PANTHER PTHR30582:SF1 46 188 1.8E-60 T 23-04-2016 RPE_RS21490 1b0fff4ec9aa36205a5256b8202b99f0 190 SUPERFAMILY SSF141523 55 189 2.09E-35 T 23-04-2016 RPE_RS21490 1b0fff4ec9aa36205a5256b8202b99f0 190 Gene3D G3DSA:2.40.440.10 58 189 3.6E-36 T 23-04-2016 RPE_RS21490 1b0fff4ec9aa36205a5256b8202b99f0 190 Pfam PF03734 L,D-transpeptidase catalytic domain 61 188 1.5E-18 T 23-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 RPE_RS21490 1b0fff4ec9aa36205a5256b8202b99f0 190 PANTHER PTHR30582 46 188 1.8E-60 T 23-04-2016 RPE_RS13155 b15593385e1a167014197a10d705c850 376 PANTHER PTHR30469:SF0 1 373 1.6E-93 T 23-04-2016 RPE_RS13155 b15593385e1a167014197a10d705c850 376 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 45 369 1.4E-67 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RPE_RS13155 b15593385e1a167014197a10d705c850 376 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 73 289 1.8E-16 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RPE_RS13155 b15593385e1a167014197a10d705c850 376 Gene3D G3DSA:2.40.50.100 178 212 4.6E-16 T 23-04-2016 RPE_RS13155 b15593385e1a167014197a10d705c850 376 Gene3D G3DSA:2.40.50.100 71 103 4.6E-16 T 23-04-2016 RPE_RS13155 b15593385e1a167014197a10d705c850 376 SUPERFAMILY SSF111369 59 294 1.02E-44 T 23-04-2016 RPE_RS13155 b15593385e1a167014197a10d705c850 376 PANTHER PTHR30469 1 373 1.6E-93 T 23-04-2016 RPE_RS13385 62645eb6055989e2efcd213244b743b8 751 PRINTS PR01032 Gene IV protein signature 578 601 5.5E-5 T 23-04-2016 RPE_RS13385 62645eb6055989e2efcd213244b743b8 751 PRINTS PR01032 Gene IV protein signature 647 675 5.5E-5 T 23-04-2016 RPE_RS13385 62645eb6055989e2efcd213244b743b8 751 PANTHER PTHR30332 102 739 9.0E-84 T 23-04-2016 RPE_RS13385 62645eb6055989e2efcd213244b743b8 751 TIGRFAM TIGR02517 type_II_gspD: type II secretion system protein D 112 729 8.6E-109 T 23-04-2016 IPR013356 Type II secretion system GspD GO:0008565|GO:0015627|GO:0015628|GO:0019867 RPE_RS13385 62645eb6055989e2efcd213244b743b8 751 Pfam PF00263 Bacterial type II and III secretion system protein 557 719 7.8E-40 T 23-04-2016 IPR004846 Type II/III secretion system GO:0009306 RPE_RS13385 62645eb6055989e2efcd213244b743b8 751 Pfam PF03958 Bacterial type II/III secretion system short domain 344 490 2.9E-11 T 23-04-2016 IPR005644 NolW-like RPE_RS13385 62645eb6055989e2efcd213244b743b8 751 PANTHER PTHR30332:SF0 102 739 9.0E-84 T 23-04-2016 RPE_RS13385 62645eb6055989e2efcd213244b743b8 751 PRINTS PR00811 Bacterial general secretion pathway protein D signature 553 577 1.2E-13 T 23-04-2016 IPR001775 GspD/PilQ family RPE_RS13385 62645eb6055989e2efcd213244b743b8 751 PRINTS PR00811 Bacterial general secretion pathway protein D signature 684 702 1.2E-13 T 23-04-2016 IPR001775 GspD/PilQ family RPE_RS13385 62645eb6055989e2efcd213244b743b8 751 PRINTS PR00811 Bacterial general secretion pathway protein D signature 588 598 1.2E-13 T 23-04-2016 IPR001775 GspD/PilQ family RPE_RS13385 62645eb6055989e2efcd213244b743b8 751 PRINTS PR00811 Bacterial general secretion pathway protein D signature 493 503 1.2E-13 T 23-04-2016 IPR001775 GspD/PilQ family RPE_RS13385 62645eb6055989e2efcd213244b743b8 751 PRINTS PR00811 Bacterial general secretion pathway protein D signature 707 721 1.2E-13 T 23-04-2016 IPR001775 GspD/PilQ family RPE_RS14290 403161a2d8f2aa260334c01c568f352a 201 Gene3D G3DSA:3.30.1950.10 57 118 3.2E-16 T 23-04-2016 RPE_RS14290 403161a2d8f2aa260334c01c568f352a 201 Pfam PF02563 Polysaccharide biosynthesis/export protein 49 122 2.5E-16 T 23-04-2016 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 RPE_RS14290 403161a2d8f2aa260334c01c568f352a 201 Gene3D G3DSA:3.10.560.10 119 177 3.4E-11 T 23-04-2016 RPE_RS14290 403161a2d8f2aa260334c01c568f352a 201 PANTHER PTHR33619:SF2 45 193 5.8E-49 T 23-04-2016 RPE_RS14290 403161a2d8f2aa260334c01c568f352a 201 PANTHER PTHR33619 45 193 5.8E-49 T 23-04-2016 RPE_RS14290 403161a2d8f2aa260334c01c568f352a 201 Pfam PF10531 SLBB domain 129 176 1.6E-9 T 23-04-2016 IPR019554 Soluble ligand binding domain RPE_RS02575 0bf8d740e4d7960fe6407d97399479c1 607 Gene3D G3DSA:3.50.50.60 365 439 1.4E-125 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS02575 0bf8d740e4d7960fe6407d97399479c1 607 Gene3D G3DSA:3.50.50.60 15 257 1.4E-125 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS02575 0bf8d740e4d7960fe6407d97399479c1 607 SUPERFAMILY SSF51905 373 448 2.13E-80 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS02575 0bf8d740e4d7960fe6407d97399479c1 607 SUPERFAMILY SSF51905 12 274 2.13E-80 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS02575 0bf8d740e4d7960fe6407d97399479c1 607 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 58 67 - T 23-04-2016 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 RPE_RS02575 0bf8d740e4d7960fe6407d97399479c1 607 SUPERFAMILY SSF56425 251 369 3.29E-41 T 23-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain RPE_RS02575 0bf8d740e4d7960fe6407d97399479c1 607 PANTHER PTHR11632 14 602 0.0 T 23-04-2016 RPE_RS02575 0bf8d740e4d7960fe6407d97399479c1 607 PANTHER PTHR11632:SF51 14 602 0.0 T 23-04-2016 RPE_RS02575 0bf8d740e4d7960fe6407d97399479c1 607 Gene3D G3DSA:3.90.700.10 258 363 1.9E-41 T 23-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain RPE_RS02575 0bf8d740e4d7960fe6407d97399479c1 607 Pfam PF00890 FAD binding domain 24 419 3.3E-126 T 23-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain RPE_RS02575 0bf8d740e4d7960fe6407d97399479c1 607 SUPERFAMILY SSF46977 466 607 3.27E-49 T 23-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 RPE_RS02575 0bf8d740e4d7960fe6407d97399479c1 607 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 21 607 2.5E-287 T 23-04-2016 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 RPE_RS02575 0bf8d740e4d7960fe6407d97399479c1 607 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 24 607 2.5E-242 T 23-04-2016 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 RPE_RS02575 0bf8d740e4d7960fe6407d97399479c1 607 PIRSF PIRSF000171 14 597 5.9E-38 T 23-04-2016 IPR030664 Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit RPE_RS02575 0bf8d740e4d7960fe6407d97399479c1 607 Gene3D G3DSA:4.10.80.40 553 607 5.0E-30 T 23-04-2016 RPE_RS02575 0bf8d740e4d7960fe6407d97399479c1 607 Gene3D G3DSA:1.20.58.100 447 552 5.9E-34 T 23-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 RPE_RS02575 0bf8d740e4d7960fe6407d97399479c1 607 Pfam PF02910 Fumarate reductase flavoprotein C-term 474 607 1.5E-42 T 23-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 RPE_RS11425 ccf2aeb5013badeb84354e2156925402 273 PRINTS PR00111 Alpha/beta hydrolase fold signature 47 62 3.6E-11 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS11425 ccf2aeb5013badeb84354e2156925402 273 PRINTS PR00111 Alpha/beta hydrolase fold signature 91 104 3.6E-11 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS11425 ccf2aeb5013badeb84354e2156925402 273 PRINTS PR00111 Alpha/beta hydrolase fold signature 216 230 3.6E-11 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS11425 ccf2aeb5013badeb84354e2156925402 273 PANTHER PTHR10992 2 273 3.8E-115 T 23-04-2016 RPE_RS11425 ccf2aeb5013badeb84354e2156925402 273 Gene3D G3DSA:3.40.50.1820 2 272 9.0E-72 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS11425 ccf2aeb5013badeb84354e2156925402 273 Pfam PF00561 alpha/beta hydrolase fold 22 255 7.8E-29 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS11425 ccf2aeb5013badeb84354e2156925402 273 PANTHER PTHR10992:SF859 2 273 3.8E-115 T 23-04-2016 RPE_RS11425 ccf2aeb5013badeb84354e2156925402 273 SUPERFAMILY SSF53474 3 272 3.57E-66 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS19355 2cb386c177f8cc3e88a54a4fa508797e 89 PANTHER PTHR34702:SF1 1 89 3.5E-13 T 23-04-2016 RPE_RS19355 2cb386c177f8cc3e88a54a4fa508797e 89 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 32 82 1.4E-17 T 23-04-2016 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 RPE_RS19355 2cb386c177f8cc3e88a54a4fa508797e 89 PIRSF PIRSF028784 1 89 1.1E-24 T 23-04-2016 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 RPE_RS19355 2cb386c177f8cc3e88a54a4fa508797e 89 PANTHER PTHR34702 1 89 3.5E-13 T 23-04-2016 RPE_RS02750 38562ecdcb62f72220b6c1f484e0f832 305 SUPERFAMILY SSF56104 4 301 5.23E-94 T 23-04-2016 RPE_RS02750 38562ecdcb62f72220b6c1f484e0f832 305 ProSitePatterns PS01057 SAICAR synthetase signature 1. 109 123 - T 23-04-2016 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 RPE_RS02750 38562ecdcb62f72220b6c1f484e0f832 305 Gene3D G3DSA:3.30.470.20 121 251 2.7E-49 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RPE_RS02750 38562ecdcb62f72220b6c1f484e0f832 305 Gene3D G3DSA:3.30.200.20 7 120 2.0E-42 T 23-04-2016 RPE_RS02750 38562ecdcb62f72220b6c1f484e0f832 305 ProSitePatterns PS01058 SAICAR synthetase signature 2. 207 215 - T 23-04-2016 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 RPE_RS02750 38562ecdcb62f72220b6c1f484e0f832 305 PANTHER PTHR11609 91 304 4.1E-102 T 23-04-2016 RPE_RS02750 38562ecdcb62f72220b6c1f484e0f832 305 PANTHER PTHR11609 1 75 4.1E-102 T 23-04-2016 RPE_RS02750 38562ecdcb62f72220b6c1f484e0f832 305 PANTHER PTHR11609:SF1 91 304 4.1E-102 T 23-04-2016 RPE_RS02750 38562ecdcb62f72220b6c1f484e0f832 305 PANTHER PTHR11609:SF1 1 75 4.1E-102 T 23-04-2016 RPE_RS02750 38562ecdcb62f72220b6c1f484e0f832 305 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 13 300 5.0E-68 T 23-04-2016 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 RPE_RS02750 38562ecdcb62f72220b6c1f484e0f832 305 Pfam PF01259 SAICAR synthetase 13 266 1.2E-94 T 23-04-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 RPE_RS02750 38562ecdcb62f72220b6c1f484e0f832 305 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 11 299 24.168 T 23-04-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 RPE_RS15540 8d6392da1b4916c959edd818fed275d9 456 TIGRFAM TIGR04247 NosD_copper_fam: nitrous oxide reductase family maturation protein NosD 38 443 6.2E-144 T 23-04-2016 IPR026464 Nitrous oxide reductase family maturation protein NosD RPE_RS15540 8d6392da1b4916c959edd818fed275d9 456 Pfam PF05048 Periplasmic copper-binding protein (NosD) 160 407 9.5E-52 T 23-04-2016 IPR007742 Periplasmic copper-binding protein NosD, beta helix domain RPE_RS15540 8d6392da1b4916c959edd818fed275d9 456 SUPERFAMILY SSF51126 32 433 8.98E-72 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor RPE_RS15540 8d6392da1b4916c959edd818fed275d9 456 Gene3D G3DSA:2.160.20.10 307 417 5.6E-29 T 23-04-2016 IPR012334 Pectin lyase fold RPE_RS15540 8d6392da1b4916c959edd818fed275d9 456 Gene3D G3DSA:2.160.20.10 32 267 5.6E-29 T 23-04-2016 IPR012334 Pectin lyase fold RPE_RS15540 8d6392da1b4916c959edd818fed275d9 456 SMART SM00710 262 284 490.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RPE_RS15540 8d6392da1b4916c959edd818fed275d9 456 SMART SM00710 316 337 270.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RPE_RS15540 8d6392da1b4916c959edd818fed275d9 456 SMART SM00710 217 238 2000.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RPE_RS15540 8d6392da1b4916c959edd818fed275d9 456 SMART SM00710 91 119 31.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RPE_RS15540 8d6392da1b4916c959edd818fed275d9 456 SMART SM00710 239 261 1400.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RPE_RS15540 8d6392da1b4916c959edd818fed275d9 456 SMART SM00710 195 216 3500.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RPE_RS15540 8d6392da1b4916c959edd818fed275d9 456 SMART SM00710 339 377 3300.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RPE_RS15540 8d6392da1b4916c959edd818fed275d9 456 SMART SM00710 143 172 1600.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RPE_RS15540 8d6392da1b4916c959edd818fed275d9 456 SMART SM00710 173 194 420.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RPE_RS15540 8d6392da1b4916c959edd818fed275d9 456 SMART SM00710 121 142 3.8 T 23-04-2016 IPR006626 Parallel beta-helix repeat RPE_RS15540 8d6392da1b4916c959edd818fed275d9 456 Pfam PF13229 Right handed beta helix region 89 155 3.0E-5 T 23-04-2016 RPE_RS15540 8d6392da1b4916c959edd818fed275d9 456 SMART SM00722 45 193 4.7E-18 T 23-04-2016 IPR006633 Carbohydrate-binding/sugar hydrolysis domain RPE_RS15540 8d6392da1b4916c959edd818fed275d9 456 SMART SM00722 199 391 5.2E-26 T 23-04-2016 IPR006633 Carbohydrate-binding/sugar hydrolysis domain RPE_RS15570 f951a08610b6933d72cb9c7738d2cd37 269 Pfam PF13353 4Fe-4S single cluster domain 42 137 1.6E-17 T 23-04-2016 RPE_RS15570 f951a08610b6933d72cb9c7738d2cd37 269 Pfam PF04055 Radical SAM superfamily 52 205 4.4E-22 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RPE_RS15570 f951a08610b6933d72cb9c7738d2cd37 269 PANTHER PTHR30352 22 268 2.1E-93 T 23-04-2016 RPE_RS15570 f951a08610b6933d72cb9c7738d2cd37 269 TIGRFAM TIGR02493 PFLA: pyruvate formate-lyase 1-activating enzyme 33 263 3.2E-95 T 23-04-2016 IPR012838 Pyruvate formate-lyase activating enzyme GO:0043365|GO:0055114 RPE_RS15570 f951a08610b6933d72cb9c7738d2cd37 269 Gene3D G3DSA:3.80.30.10 97 268 4.6E-61 T 23-04-2016 RPE_RS15570 f951a08610b6933d72cb9c7738d2cd37 269 SUPERFAMILY SSF102114 49 239 1.2E-27 T 23-04-2016 RPE_RS15570 f951a08610b6933d72cb9c7738d2cd37 269 ProSitePatterns PS01087 Radical activating enzymes signature. 44 65 - T 23-04-2016 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 RPE_RS15570 f951a08610b6933d72cb9c7738d2cd37 269 PANTHER PTHR30352:SF9 22 268 2.1E-93 T 23-04-2016 RPE_RS12800 d44d73ccf78945d8ca843fd7d23ee05a 133 PANTHER PTHR33653 1 133 5.4E-18 T 23-04-2016 RPE_RS12800 d44d73ccf78945d8ca843fd7d23ee05a 133 SUPERFAMILY SSF88723 3 129 1.68E-22 T 23-04-2016 IPR029060 PIN domain-like RPE_RS12800 d44d73ccf78945d8ca843fd7d23ee05a 133 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 2 128 10.621 T 23-04-2016 IPR022907 VapC family GO:0004540 RPE_RS12800 d44d73ccf78945d8ca843fd7d23ee05a 133 PANTHER PTHR33653:SF4 1 133 5.4E-18 T 23-04-2016 RPE_RS12800 d44d73ccf78945d8ca843fd7d23ee05a 133 Pfam PF01850 PIN domain 2 121 1.4E-12 T 23-04-2016 IPR002716 PIN domain RPE_RS12800 d44d73ccf78945d8ca843fd7d23ee05a 133 Gene3D G3DSA:3.40.50.1010 2 127 1.1E-14 T 23-04-2016 IPR029060 PIN domain-like RPE_RS22690 252123649263a5fffd7a147741e90643 576 SUPERFAMILY SSF52540 225 466 2.21E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS22690 252123649263a5fffd7a147741e90643 576 Pfam PF02954 Bacterial regulatory protein, Fis family 533 569 1.1E-13 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RPE_RS22690 252123649263a5fffd7a147741e90643 576 SMART SM00065 42 195 4.2E-23 T 23-04-2016 IPR003018 GAF domain GO:0005515 RPE_RS22690 252123649263a5fffd7a147741e90643 576 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 438 447 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site RPE_RS22690 252123649263a5fffd7a147741e90643 576 Pfam PF00158 Sigma-54 interaction domain 226 392 1.1E-71 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RPE_RS22690 252123649263a5fffd7a147741e90643 576 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 552 572 2.2E-10 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RPE_RS22690 252123649263a5fffd7a147741e90643 576 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 535 552 2.2E-10 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RPE_RS22690 252123649263a5fffd7a147741e90643 576 Pfam PF01590 GAF domain 43 184 2.2E-14 T 23-04-2016 IPR003018 GAF domain GO:0005515 RPE_RS22690 252123649263a5fffd7a147741e90643 576 Gene3D G3DSA:3.40.50.300 221 397 2.4E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS22690 252123649263a5fffd7a147741e90643 576 Gene3D G3DSA:1.10.10.60 517 560 3.3E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS22690 252123649263a5fffd7a147741e90643 576 Gene3D G3DSA:1.10.10.60 452 470 3.3E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS22690 252123649263a5fffd7a147741e90643 576 PANTHER PTHR32071 144 576 1.5E-143 T 23-04-2016 RPE_RS22690 252123649263a5fffd7a147741e90643 576 PANTHER PTHR32071:SF18 144 576 1.5E-143 T 23-04-2016 RPE_RS22690 252123649263a5fffd7a147741e90643 576 Gene3D G3DSA:1.10.8.60 399 451 3.7E-18 T 23-04-2016 RPE_RS22690 252123649263a5fffd7a147741e90643 576 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 312 327 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RPE_RS22690 252123649263a5fffd7a147741e90643 576 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 250 263 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RPE_RS22690 252123649263a5fffd7a147741e90643 576 SMART SM00382 246 389 3.9E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS22690 252123649263a5fffd7a147741e90643 576 Gene3D G3DSA:3.30.450.40 27 195 4.7E-21 T 23-04-2016 IPR029016 GAF domain-like RPE_RS22690 252123649263a5fffd7a147741e90643 576 TIGRFAM TIGR01817 nifA: Nif-specific regulatory protein 26 576 2.6E-229 T 23-04-2016 IPR010113 Nif-specific regulatory protein GO:0003700|GO:0006355|GO:0009399 RPE_RS22690 252123649263a5fffd7a147741e90643 576 SUPERFAMILY SSF55781 27 189 2.24E-17 T 23-04-2016 IPR029016 GAF domain-like RPE_RS17420 d666a1e08cef7c15952b4b8a35cc3f93 171 SUPERFAMILY SSF88946 3 74 2.12E-8 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS17420 d666a1e08cef7c15952b4b8a35cc3f93 171 Pfam PF04542 Sigma-70 region 2 18 78 1.2E-6 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS17420 d666a1e08cef7c15952b4b8a35cc3f93 171 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 20 160 3.8E-19 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS17420 d666a1e08cef7c15952b4b8a35cc3f93 171 Gene3D G3DSA:1.10.10.10 105 160 1.2E-8 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS17420 d666a1e08cef7c15952b4b8a35cc3f93 171 SUPERFAMILY SSF88659 92 162 8.72E-11 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS17420 d666a1e08cef7c15952b4b8a35cc3f93 171 PANTHER PTHR30173:SF30 1 162 4.3E-34 T 23-04-2016 RPE_RS17420 d666a1e08cef7c15952b4b8a35cc3f93 171 Gene3D G3DSA:1.10.1740.10 11 101 4.7E-7 T 23-04-2016 RPE_RS17420 d666a1e08cef7c15952b4b8a35cc3f93 171 Pfam PF08281 Sigma-70, region 4 110 158 7.2E-12 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS17420 d666a1e08cef7c15952b4b8a35cc3f93 171 PANTHER PTHR30173 1 162 4.3E-34 T 23-04-2016 RPE_RS20185 273985ab4c32ea35460e857f3f8d9c7f 1459 SUPERFAMILY SSF53335 123 311 3.11E-13 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS20185 273985ab4c32ea35460e857f3f8d9c7f 1459 Gene3D G3DSA:3.40.50.300 509 670 9.1E-7 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS20185 273985ab4c32ea35460e857f3f8d9c7f 1459 Pfam PF13871 C-terminal domain on Strawberry notch homologue 924 1180 4.3E-84 T 23-04-2016 IPR026937 Strawberry notch, helicase C domain RPE_RS20185 273985ab4c32ea35460e857f3f8d9c7f 1459 SUPERFAMILY SSF52540 500 708 1.55E-14 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS20185 273985ab4c32ea35460e857f3f8d9c7f 1459 SUPERFAMILY SSF52540 421 471 1.55E-14 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS20185 273985ab4c32ea35460e857f3f8d9c7f 1459 Pfam PF13872 P-loop containing NTP hydrolase pore-1 421 753 5.2E-116 T 23-04-2016 RPE_RS20185 273985ab4c32ea35460e857f3f8d9c7f 1459 Gene3D G3DSA:3.40.50.150 144 261 1.4E-7 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS20185 273985ab4c32ea35460e857f3f8d9c7f 1459 PANTHER PTHR12706 499 1369 1.4E-303 T 23-04-2016 IPR026741 Protein strawberry notch GO:0006355 RPE_RS20185 273985ab4c32ea35460e857f3f8d9c7f 1459 PANTHER PTHR12706 220 476 1.4E-303 T 23-04-2016 IPR026741 Protein strawberry notch GO:0006355 RPE_RS09870 476d962189c0b312707dd0d95844da47 453 PANTHER PTHR24423 182 443 1.0E-40 T 23-04-2016 RPE_RS09870 476d962189c0b312707dd0d95844da47 453 PANTHER PTHR24423:SF496 182 443 1.0E-40 T 23-04-2016 RPE_RS09870 476d962189c0b312707dd0d95844da47 453 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 343 443 1.6E-9 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS09870 476d962189c0b312707dd0d95844da47 453 SUPERFAMILY SSF55874 305 445 2.23E-20 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS09870 476d962189c0b312707dd0d95844da47 453 Gene3D G3DSA:3.30.565.10 306 448 6.0E-20 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS09870 476d962189c0b312707dd0d95844da47 453 SMART SM00387 340 446 5.8E-14 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS13665 cf9fecbf0476dc6c9490ed75c4f229ad 730 PANTHER PTHR32282:SF0 17 605 1.5E-168 T 23-04-2016 RPE_RS13665 cf9fecbf0476dc6c9490ed75c4f229ad 730 SUPERFAMILY SSF53955 81 302 4.22E-62 T 23-04-2016 IPR023346 Lysozyme-like domain RPE_RS13665 cf9fecbf0476dc6c9490ed75c4f229ad 730 Gene3D G3DSA:3.40.710.10 272 611 2.1E-62 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS13665 cf9fecbf0476dc6c9490ed75c4f229ad 730 Pfam PF00912 Transglycosylase 110 269 3.7E-48 T 23-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 RPE_RS13665 cf9fecbf0476dc6c9490ed75c4f229ad 730 Gene3D G3DSA:1.10.3810.10 110 271 3.3E-51 T 23-04-2016 RPE_RS13665 cf9fecbf0476dc6c9490ed75c4f229ad 730 Pfam PF06832 Penicillin-Binding Protein C-terminus Family 646 726 1.2E-14 T 23-04-2016 IPR009647 Penicillin-binding, C-terminal KEGG: 00230+2.4.2.-|KEGG: 00514+2.4.2.-|UniPathway: UPA00219 RPE_RS13665 cf9fecbf0476dc6c9490ed75c4f229ad 730 Pfam PF00905 Penicillin binding protein transpeptidase domain 347 465 1.5E-14 T 23-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RPE_RS13665 cf9fecbf0476dc6c9490ed75c4f229ad 730 SUPERFAMILY SSF56601 253 273 2.25E-84 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS13665 cf9fecbf0476dc6c9490ed75c4f229ad 730 SUPERFAMILY SSF56601 300 611 2.25E-84 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS13665 cf9fecbf0476dc6c9490ed75c4f229ad 730 TIGRFAM TIGR02073 PBP_1c: penicillin-binding protein 1C 74 619 3.6E-220 T 23-04-2016 IPR011815 Penicillin-binding protein 1C GO:0008955|GO:0009252 KEGG: 00230+2.4.2.-|KEGG: 00514+2.4.2.-|UniPathway: UPA00219 RPE_RS13665 cf9fecbf0476dc6c9490ed75c4f229ad 730 PANTHER PTHR32282 17 605 1.5E-168 T 23-04-2016 RPE_RS16525 1627289bb39df42b5421859ea1aab080 827 PANTHER PTHR30189 479 813 5.9E-84 T 23-04-2016 RPE_RS16525 1627289bb39df42b5421859ea1aab080 827 PANTHER PTHR30189 25 457 5.9E-84 T 23-04-2016 RPE_RS16525 1627289bb39df42b5421859ea1aab080 827 Gene3D G3DSA:2.60.450.10 75 231 1.1E-17 T 23-04-2016 RPE_RS16525 1627289bb39df42b5421859ea1aab080 827 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 39 810 18.157 T 23-04-2016 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 RPE_RS16525 1627289bb39df42b5421859ea1aab080 827 Pfam PF04453 Organic solvent tolerance protein 332 745 9.4E-76 T 23-04-2016 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 RPE_RS16055 680f02089c84fe37cb1d7640ec909994 478 PANTHER PTHR11699:SF168 18 473 9.1E-50 T 23-04-2016 RPE_RS16055 680f02089c84fe37cb1d7640ec909994 478 Gene3D G3DSA:3.40.605.10 14 232 1.8E-19 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RPE_RS16055 680f02089c84fe37cb1d7640ec909994 478 SUPERFAMILY SSF53720 14 449 9.56E-65 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RPE_RS16055 680f02089c84fe37cb1d7640ec909994 478 Pfam PF00171 Aldehyde dehydrogenase family 13 276 1.1E-19 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RPE_RS16055 680f02089c84fe37cb1d7640ec909994 478 PANTHER PTHR11699 18 473 9.1E-50 T 23-04-2016 RPE_RS16055 680f02089c84fe37cb1d7640ec909994 478 Gene3D G3DSA:3.40.309.10 233 408 8.7E-20 T 23-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RPE_RS00740 2d3e51ef184f8983e8a052203b74208d 309 PANTHER PTHR10657 14 281 2.4E-53 T 23-04-2016 RPE_RS00740 2d3e51ef184f8983e8a052203b74208d 309 SUPERFAMILY SSF109998 38 176 2.35E-16 T 23-04-2016 IPR027304 Trigger factor/SurA domain RPE_RS00740 2d3e51ef184f8983e8a052203b74208d 309 SUPERFAMILY SSF54534 141 235 1.77E-34 T 23-04-2016 RPE_RS00740 2d3e51ef184f8983e8a052203b74208d 309 Pfam PF13616 PPIC-type PPIASE domain 144 237 1.8E-26 T 23-04-2016 RPE_RS00740 2d3e51ef184f8983e8a052203b74208d 309 PANTHER PTHR10657:SF11 14 281 2.4E-53 T 23-04-2016 RPE_RS00740 2d3e51ef184f8983e8a052203b74208d 309 Gene3D G3DSA:3.10.50.40 141 259 2.3E-46 T 23-04-2016 RPE_RS10655 86dd1de3f3261e45512b0963516f6080 609 Pfam PF01321 Creatinase/Prolidase N-terminal domain 21 153 4.1E-16 T 23-04-2016 IPR000587 Creatinase, N-terminal GO:0016787 RPE_RS10655 86dd1de3f3261e45512b0963516f6080 609 Pfam PF16188 C-terminal region of peptidase_M24 548 607 1.8E-22 T 23-04-2016 IPR032416 Peptidase M24, C-terminal domain RPE_RS10655 86dd1de3f3261e45512b0963516f6080 609 SUPERFAMILY SSF55920 319 573 8.64E-63 T 23-04-2016 IPR000994 Peptidase M24, structural domain RPE_RS10655 86dd1de3f3261e45512b0963516f6080 609 PANTHER PTHR10804 1 194 1.3E-267 T 23-04-2016 RPE_RS10655 86dd1de3f3261e45512b0963516f6080 609 PANTHER PTHR10804 298 605 1.3E-267 T 23-04-2016 RPE_RS10655 86dd1de3f3261e45512b0963516f6080 609 Pfam PF00557 Metallopeptidase family M24 327 536 1.0E-49 T 23-04-2016 IPR000994 Peptidase M24, structural domain RPE_RS10655 86dd1de3f3261e45512b0963516f6080 609 Gene3D G3DSA:3.90.230.10 316 574 2.0E-63 T 23-04-2016 IPR000994 Peptidase M24, structural domain RPE_RS10655 86dd1de3f3261e45512b0963516f6080 609 Pfam PF16189 Creatinase/Prolidase N-terminal domain 162 322 2.9E-36 T 23-04-2016 RPE_RS10655 86dd1de3f3261e45512b0963516f6080 609 SUPERFAMILY SSF53092 19 143 1.33E-9 T 23-04-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal RPE_RS10655 86dd1de3f3261e45512b0963516f6080 609 PANTHER PTHR10804:SF105 1 194 1.3E-267 T 23-04-2016 RPE_RS10655 86dd1de3f3261e45512b0963516f6080 609 PANTHER PTHR10804:SF105 298 605 1.3E-267 T 23-04-2016 RPE_RS10655 86dd1de3f3261e45512b0963516f6080 609 SUPERFAMILY SSF53092 176 297 4.97E-5 T 23-04-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal RPE_RS10655 86dd1de3f3261e45512b0963516f6080 609 Gene3D G3DSA:3.40.350.10 185 300 1.6E-6 T 23-04-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RPE_RS10655 86dd1de3f3261e45512b0963516f6080 609 Gene3D G3DSA:3.40.350.10 20 147 1.0E-16 T 23-04-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RPE_RS18185 67c41cc01bfadd99231d86aacca5053b 130 Pfam PF00072 Response regulator receiver domain 11 123 8.7E-25 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS18185 67c41cc01bfadd99231d86aacca5053b 130 SUPERFAMILY SSF52172 8 127 2.42E-34 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS18185 67c41cc01bfadd99231d86aacca5053b 130 PANTHER PTHR26402 9 126 5.6E-35 T 23-04-2016 RPE_RS18185 67c41cc01bfadd99231d86aacca5053b 130 Gene3D G3DSA:3.40.50.2300 4 126 1.9E-34 T 23-04-2016 RPE_RS18185 67c41cc01bfadd99231d86aacca5053b 130 SMART SM00448 9 123 7.0E-32 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS00875 618f37f5ea95ec743518771848b8ee72 60 Pfam PF01783 Ribosomal L32p protein family 2 55 8.2E-20 T 23-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 RPE_RS00875 618f37f5ea95ec743518771848b8ee72 60 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 55 5.2E-22 T 23-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 RPE_RS00875 618f37f5ea95ec743518771848b8ee72 60 SUPERFAMILY SSF57829 1 55 9.16E-19 T 23-04-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 RPE_RS00875 618f37f5ea95ec743518771848b8ee72 60 PANTHER PTHR35534 1 60 3.0E-26 T 23-04-2016 RPE_RS00875 618f37f5ea95ec743518771848b8ee72 60 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 55 18.232 T 23-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 RPE_RS21560 ac43642eeb34a0f6dc5f7efea5711026 66 PRINTS PR00050 Cold shock protein signature 40 58 8.6E-12 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RPE_RS21560 ac43642eeb34a0f6dc5f7efea5711026 66 PRINTS PR00050 Cold shock protein signature 25 34 8.6E-12 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RPE_RS21560 ac43642eeb34a0f6dc5f7efea5711026 66 PRINTS PR00050 Cold shock protein signature 4 19 8.6E-12 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RPE_RS21560 ac43642eeb34a0f6dc5f7efea5711026 66 Gene3D G3DSA:2.40.50.140 1 65 2.4E-25 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS21560 ac43642eeb34a0f6dc5f7efea5711026 66 SUPERFAMILY SSF50249 1 65 3.0E-21 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS21560 ac43642eeb34a0f6dc5f7efea5711026 66 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 1.7E-23 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RPE_RS21560 ac43642eeb34a0f6dc5f7efea5711026 66 PANTHER PTHR11544 1 66 1.0E-20 T 23-04-2016 RPE_RS21560 ac43642eeb34a0f6dc5f7efea5711026 66 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 23-04-2016 IPR019844 Cold-shock conserved site RPE_RS21560 ac43642eeb34a0f6dc5f7efea5711026 66 PIRSF PIRSF002599 1 66 6.3E-21 T 23-04-2016 IPR012156 Cold shock, CspA GO:0003676 RPE_RS21560 ac43642eeb34a0f6dc5f7efea5711026 66 SMART SM00357 3 66 5.9E-19 T 23-04-2016 IPR011129 Cold shock protein GO:0003676 RPE_RS09295 f2ff482224d71c847226668f0f2fcf6c 328 PANTHER PTHR23408:SF17 12 323 1.4E-159 T 23-04-2016 RPE_RS09295 f2ff482224d71c847226668f0f2fcf6c 328 SUPERFAMILY SSF52540 13 324 3.73E-89 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS09295 f2ff482224d71c847226668f0f2fcf6c 328 TIGRFAM TIGR00750 lao: LAO/AO transport system ATPase 19 324 2.3E-106 T 23-04-2016 IPR005129 SIMIBI class G3E GTPase, ArgK/MeaB GO:0003924|GO:0005525 RPE_RS09295 f2ff482224d71c847226668f0f2fcf6c 328 Gene3D G3DSA:1.20.5.170 4 56 2.0E-20 T 23-04-2016 RPE_RS09295 f2ff482224d71c847226668f0f2fcf6c 328 PANTHER PTHR23408 12 323 1.4E-159 T 23-04-2016 RPE_RS09295 f2ff482224d71c847226668f0f2fcf6c 328 Pfam PF03308 ArgK protein 24 295 9.1E-108 T 23-04-2016 RPE_RS09295 f2ff482224d71c847226668f0f2fcf6c 328 Gene3D G3DSA:3.40.50.300 57 260 6.8E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12450 e32e9d0fdac80e1c4722c497def51b7f 870 PANTHER PTHR11528:SF26 381 495 5.7E-13 T 23-04-2016 RPE_RS12450 e32e9d0fdac80e1c4722c497def51b7f 870 SUPERFAMILY SSF55874 368 557 1.44E-27 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS12450 e32e9d0fdac80e1c4722c497def51b7f 870 Gene3D G3DSA:3.30.565.10 365 548 5.4E-26 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS12450 e32e9d0fdac80e1c4722c497def51b7f 870 PANTHER PTHR11528 381 495 5.7E-13 T 23-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 RPE_RS12450 e32e9d0fdac80e1c4722c497def51b7f 870 PRINTS PR00775 90kDa heat shock protein signature 473 495 2.2E-12 T 23-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RPE_RS12450 e32e9d0fdac80e1c4722c497def51b7f 870 PRINTS PR00775 90kDa heat shock protein signature 426 443 2.2E-12 T 23-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RPE_RS12450 e32e9d0fdac80e1c4722c497def51b7f 870 PRINTS PR00775 90kDa heat shock protein signature 381 403 2.2E-12 T 23-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RPE_RS12450 e32e9d0fdac80e1c4722c497def51b7f 870 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 384 499 2.7E-9 T 23-04-2016 RPE_RS21850 01e639d53c0cc24b144d674cb7625697 253 PANTHER PTHR35811 4 244 3.8E-58 T 23-04-2016 RPE_RS21850 01e639d53c0cc24b144d674cb7625697 253 PANTHER PTHR35811:SF1 4 244 3.8E-58 T 23-04-2016 RPE_RS21850 01e639d53c0cc24b144d674cb7625697 253 Gene3D G3DSA:3.40.50.1010 7 147 1.9E-29 T 23-04-2016 IPR029060 PIN domain-like RPE_RS21850 01e639d53c0cc24b144d674cb7625697 253 Pfam PF12872 OST-HTH/LOTUS domain 175 238 2.5E-15 T 23-04-2016 IPR025605 OST-HTH/LOTUS domain RPE_RS21850 01e639d53c0cc24b144d674cb7625697 253 Pfam PF01936 NYN domain 9 142 4.6E-30 T 23-04-2016 IPR021139 NYN domain, limkain-b1-type RPE_RS13510 3cd2aefb5360e3bb05cfb332f12b06c0 342 PANTHER PTHR30480:SF7 7 328 8.0E-100 T 23-04-2016 RPE_RS13510 3cd2aefb5360e3bb05cfb332f12b06c0 342 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 15 301 1.4E-50 T 23-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RPE_RS13510 3cd2aefb5360e3bb05cfb332f12b06c0 342 SUPERFAMILY SSF51445 6 294 6.42E-67 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RPE_RS13510 3cd2aefb5360e3bb05cfb332f12b06c0 342 Gene3D G3DSA:3.20.20.300 6 297 1.5E-67 T 23-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RPE_RS13510 3cd2aefb5360e3bb05cfb332f12b06c0 342 PANTHER PTHR30480 7 328 8.0E-100 T 23-04-2016 RPE_RS13900 c810804ddc7123d6138f530f654517ff 146 SUPERFAMILY SSF74653 25 125 1.94E-5 T 23-04-2016 RPE_RS13900 c810804ddc7123d6138f530f654517ff 146 Gene3D G3DSA:3.30.1150.10 34 128 4.9E-4 T 23-04-2016 RPE_RS03750 6bb30946ebcd38cfef12fd918f3f3e47 304 Pfam PF04909 Amidohydrolase 28 299 4.9E-48 T 23-04-2016 IPR006680 Amidohydrolase-related GO:0016787 RPE_RS03750 6bb30946ebcd38cfef12fd918f3f3e47 304 SUPERFAMILY SSF51556 24 299 3.66E-75 T 23-04-2016 IPR032466 Metal-dependent hydrolase RPE_RS03750 6bb30946ebcd38cfef12fd918f3f3e47 304 PANTHER PTHR35563 6 303 1.9E-58 T 23-04-2016 RPE_RS03750 6bb30946ebcd38cfef12fd918f3f3e47 304 Gene3D G3DSA:3.20.20.140 3 300 3.9E-105 T 23-04-2016 RPE_RS03750 6bb30946ebcd38cfef12fd918f3f3e47 304 PANTHER PTHR35563:SF1 6 303 1.9E-58 T 23-04-2016 RPE_RS06960 4549528a140e250ff603b00a8ae6c241 268 SUPERFAMILY SSF161098 8 267 2.15E-60 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS06960 4549528a140e250ff603b00a8ae6c241 268 PANTHER PTHR32243:SF18 7 268 6.6E-94 T 23-04-2016 RPE_RS06960 4549528a140e250ff603b00a8ae6c241 268 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 6 257 6.7E-7 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS06960 4549528a140e250ff603b00a8ae6c241 268 PANTHER PTHR32243 7 268 6.6E-94 T 23-04-2016 RPE_RS06960 4549528a140e250ff603b00a8ae6c241 268 Gene3D G3DSA:1.10.3720.10 9 255 3.0E-53 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS09795 ea39f7e07ab4ab083308d89049f3a9e6 174 Pfam PF07681 DoxX 36 129 8.4E-20 T 23-04-2016 IPR032808 DoxX family RPE_RS09795 ea39f7e07ab4ab083308d89049f3a9e6 174 PANTHER PTHR33452 15 172 3.5E-12 T 23-04-2016 RPE_RS00355 c29980dea784e14e1bb9e684012f3ce9 204 Pfam PF13649 Methyltransferase domain 42 133 5.2E-9 T 23-04-2016 RPE_RS00355 c29980dea784e14e1bb9e684012f3ce9 204 PANTHER PTHR10108:SF838 8 162 1.6E-28 T 23-04-2016 RPE_RS00355 c29980dea784e14e1bb9e684012f3ce9 204 SUPERFAMILY SSF53335 6 203 7.81E-26 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS00355 c29980dea784e14e1bb9e684012f3ce9 204 Gene3D G3DSA:3.40.50.150 23 189 2.5E-21 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS00355 c29980dea784e14e1bb9e684012f3ce9 204 PANTHER PTHR10108 8 162 1.6E-28 T 23-04-2016 RPE_RS01420 30e893a84ae6c7e4ef3557d1a6f6a20e 510 PANTHER PTHR15184:SF3 1 494 0.0 T 23-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RPE_RS01420 30e893a84ae6c7e4ef3557d1a6f6a20e 510 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 373 1.7E-74 T 23-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RPE_RS01420 30e893a84ae6c7e4ef3557d1a6f6a20e 510 Gene3D G3DSA:3.40.50.300 94 380 5.5E-123 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01420 30e893a84ae6c7e4ef3557d1a6f6a20e 510 Gene3D G3DSA:1.20.150.20 381 509 1.4E-54 T 23-04-2016 RPE_RS01420 30e893a84ae6c7e4ef3557d1a6f6a20e 510 SUPERFAMILY SSF50615 10 94 4.19E-30 T 23-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RPE_RS01420 30e893a84ae6c7e4ef3557d1a6f6a20e 510 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 364 373 - T 23-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RPE_RS01420 30e893a84ae6c7e4ef3557d1a6f6a20e 510 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 380 504 9.9E-48 T 23-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RPE_RS01420 30e893a84ae6c7e4ef3557d1a6f6a20e 510 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 26 91 1.7E-18 T 23-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RPE_RS01420 30e893a84ae6c7e4ef3557d1a6f6a20e 510 SUPERFAMILY SSF52540 96 379 4.69E-100 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01420 30e893a84ae6c7e4ef3557d1a6f6a20e 510 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 510 51.62 T 23-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RPE_RS01420 30e893a84ae6c7e4ef3557d1a6f6a20e 510 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 3 510 1.1E-250 T 23-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RPE_RS01420 30e893a84ae6c7e4ef3557d1a6f6a20e 510 PANTHER PTHR15184 1 494 0.0 T 23-04-2016 RPE_RS01420 30e893a84ae6c7e4ef3557d1a6f6a20e 510 SUPERFAMILY SSF47917 381 509 9.94E-48 T 23-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RPE_RS01420 30e893a84ae6c7e4ef3557d1a6f6a20e 510 PIRSF PIRSF039088 1 510 2.8E-280 T 23-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RPE_RS01420 30e893a84ae6c7e4ef3557d1a6f6a20e 510 Gene3D G3DSA:2.40.30.20 1 92 2.0E-41 T 23-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RPE_RS14195 d46ae629117e38fbd524b9bd45ca5b37 325 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 109 192 1.0E-33 T 23-04-2016 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 RPE_RS14195 d46ae629117e38fbd524b9bd45ca5b37 325 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 6 325 4.0E-124 T 23-04-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 RPE_RS14195 d46ae629117e38fbd524b9bd45ca5b37 325 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 4 325 71.653 T 23-04-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 RPE_RS14195 d46ae629117e38fbd524b9bd45ca5b37 325 PANTHER PTHR18919:SF109 29 325 4.9E-137 T 23-04-2016 RPE_RS14195 d46ae629117e38fbd524b9bd45ca5b37 325 Gene3D G3DSA:3.40.47.10 4 163 1.5E-67 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS14195 d46ae629117e38fbd524b9bd45ca5b37 325 PANTHER PTHR18919 29 325 4.9E-137 T 23-04-2016 RPE_RS14195 d46ae629117e38fbd524b9bd45ca5b37 325 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 237 325 1.4E-36 T 23-04-2016 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 RPE_RS14195 d46ae629117e38fbd524b9bd45ca5b37 325 SUPERFAMILY SSF53901 8 325 3.22E-74 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS14195 d46ae629117e38fbd524b9bd45ca5b37 325 Gene3D G3DSA:3.40.47.10 164 325 4.8E-55 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS18885 240f1315bfdf6d6db92cc7f66be33ef7 396 PANTHER PTHR10909 1 396 1.4E-191 T 23-04-2016 RPE_RS18885 240f1315bfdf6d6db92cc7f66be33ef7 396 Gene3D G3DSA:1.20.140.10 221 395 1.2E-30 T 23-04-2016 RPE_RS18885 240f1315bfdf6d6db92cc7f66be33ef7 396 Gene3D G3DSA:1.10.540.10 1 120 1.9E-28 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS18885 240f1315bfdf6d6db92cc7f66be33ef7 396 SUPERFAMILY SSF47203 231 396 5.96E-21 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS18885 240f1315bfdf6d6db92cc7f66be33ef7 396 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 119 3.9E-22 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS18885 240f1315bfdf6d6db92cc7f66be33ef7 396 Gene3D G3DSA:2.40.110.10 124 220 7.2E-37 T 23-04-2016 RPE_RS18885 240f1315bfdf6d6db92cc7f66be33ef7 396 PANTHER PTHR10909:SF229 1 396 1.4E-191 T 23-04-2016 RPE_RS18885 240f1315bfdf6d6db92cc7f66be33ef7 396 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 231 393 6.4E-21 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS18885 240f1315bfdf6d6db92cc7f66be33ef7 396 SUPERFAMILY SSF56645 2 244 5.37E-79 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RPE_RS18885 240f1315bfdf6d6db92cc7f66be33ef7 396 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 125 219 1.4E-21 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RPE_RS18885 240f1315bfdf6d6db92cc7f66be33ef7 396 TIGRFAM TIGR03204 pimC_large: pimeloyl-CoA dehydrogenase, large subunit 2 396 3.1E-264 T 23-04-2016 IPR017617 Pimeloyl-CoA dehydrogenase, large subunit RPE_RS06290 8b1b336466533775ced8a54402c8b476 751 Pfam PF07503 HypF finger 164 194 5.7E-14 T 23-04-2016 IPR011125 Zinc finger, HypF-type GO:0008270 UniPathway: UPA00335 RPE_RS06290 8b1b336466533775ced8a54402c8b476 751 Pfam PF07503 HypF finger 114 146 1.1E-13 T 23-04-2016 IPR011125 Zinc finger, HypF-type GO:0008270 UniPathway: UPA00335 RPE_RS06290 8b1b336466533775ced8a54402c8b476 751 ProSitePatterns PS00150 Acylphosphatase signature 1. 19 29 - T 23-04-2016 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 RPE_RS06290 8b1b336466533775ced8a54402c8b476 751 PANTHER PTHR10029:SF4 14 751 0.0 T 23-04-2016 RPE_RS06290 8b1b336466533775ced8a54402c8b476 751 SUPERFAMILY SSF54975 14 96 5.67E-20 T 23-04-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 RPE_RS06290 8b1b336466533775ced8a54402c8b476 751 PIRSF PIRSF006256 10 749 3.6E-268 T 23-04-2016 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 UniPathway: UPA00335 RPE_RS06290 8b1b336466533775ced8a54402c8b476 751 PANTHER PTHR10029 14 751 0.0 T 23-04-2016 RPE_RS06290 8b1b336466533775ced8a54402c8b476 751 SUPERFAMILY SSF55821 181 395 7.32E-42 T 23-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain RPE_RS06290 8b1b336466533775ced8a54402c8b476 751 Pfam PF00708 Acylphosphatase 14 96 1.2E-18 T 23-04-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 RPE_RS06290 8b1b336466533775ced8a54402c8b476 751 TIGRFAM TIGR00143 hypF: carbamoyltransferase HypF 17 741 7.0E-216 T 23-04-2016 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 UniPathway: UPA00335 RPE_RS06290 8b1b336466533775ced8a54402c8b476 751 Pfam PF01300 Telomere recombination 204 387 3.0E-46 T 23-04-2016 IPR006070 YrdC-like domain GO:0003725 RPE_RS06290 8b1b336466533775ced8a54402c8b476 751 Gene3D G3DSA:3.90.870.10 198 381 9.4E-40 T 23-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain RPE_RS06290 8b1b336466533775ced8a54402c8b476 751 Gene3D G3DSA:3.30.70.100 14 96 9.5E-24 T 23-04-2016 RPE_RS11790 6119cfbacf2a428d49ac138549a67d41 147 SUPERFAMILY SSF141734 18 127 2.75E-45 T 23-04-2016 RPE_RS11790 6119cfbacf2a428d49ac138549a67d41 147 PANTHER PTHR21256 1 132 3.0E-58 T 23-04-2016 RPE_RS11790 6119cfbacf2a428d49ac138549a67d41 147 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 67 121 2.0E-26 T 23-04-2016 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19|UniPathway: UPA00031 RPE_RS11790 6119cfbacf2a428d49ac138549a67d41 147 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 18 122 31.441 T 23-04-2016 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19|UniPathway: UPA00031 RPE_RS11790 6119cfbacf2a428d49ac138549a67d41 147 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 44 118 1.5E-34 T 23-04-2016 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19|UniPathway: UPA00031 RPE_RS06790 be292a00d4b6dac283246f64f044a1ce 531 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 13 419 1.4E-82 T 23-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 RPE_RS06790 be292a00d4b6dac283246f64f044a1ce 531 PIRSF PIRSF000163 1 531 7.0E-216 T 23-04-2016 IPR016209 Protochlorophyllide reductase, ChlB, light independent GO:0016730|GO:0046148|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RPE_RS06790 be292a00d4b6dac283246f64f044a1ce 531 SUPERFAMILY SSF53807 3 438 5.23E-111 T 23-04-2016 RPE_RS06790 be292a00d4b6dac283246f64f044a1ce 531 Gene3D G3DSA:3.40.50.1980 159 265 1.6E-16 T 23-04-2016 RPE_RS06790 be292a00d4b6dac283246f64f044a1ce 531 PANTHER PTHR33712 1 531 1.8E-125 T 23-04-2016 RPE_RS06790 be292a00d4b6dac283246f64f044a1ce 531 TIGRFAM TIGR01278 DPOR_BchB: light-independent protochlorophyllide reductase, B subunit 1 530 4.9E-190 T 23-04-2016 IPR005969 Light-independent protochlorophyllide reductase, B subunit GO:0015995|GO:0016730|GO:0019685|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RPE_RS06790 be292a00d4b6dac283246f64f044a1ce 531 Hamap MF_00353 Light-independent protochlorophyllide reductase subunit B [bchB]. 1 530 52.339 T 23-04-2016 IPR005969 Light-independent protochlorophyllide reductase, B subunit GO:0015995|GO:0016730|GO:0019685|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RPE_RS06790 be292a00d4b6dac283246f64f044a1ce 531 Pfam PF08369 Proto-chlorophyllide reductase 57 kD subunit 482 526 1.1E-18 T 23-04-2016 IPR013580 Proto-chlorophyllide/chlorophyllide reductase, C-terminal GO:0015979|GO:0015995|GO:0016491|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RPE_RS06790 be292a00d4b6dac283246f64f044a1ce 531 Gene3D G3DSA:3.40.50.1980 13 149 6.2E-20 T 23-04-2016 RPE_RS06790 be292a00d4b6dac283246f64f044a1ce 531 PANTHER PTHR33712:SF5 1 531 1.8E-125 T 23-04-2016 RPE_RS06790 be292a00d4b6dac283246f64f044a1ce 531 Gene3D G3DSA:3.40.50.1980 290 443 3.2E-34 T 23-04-2016 RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 Gene3D G3DSA:1.10.287.950 606 810 2.9E-61 T 23-04-2016 RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 Pfam PF13426 PAS domain 311 409 3.5E-12 T 23-04-2016 IPR000014 PAS domain RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 PANTHER PTHR24422 278 605 1.6E-155 T 23-04-2016 RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 PANTHER PTHR24422 663 817 1.6E-155 T 23-04-2016 RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 SMART SM00091 415 483 3.0 T 23-04-2016 IPR000014 PAS domain RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 SMART SM00091 46 115 0.25 T 23-04-2016 IPR000014 PAS domain RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 SMART SM00091 293 366 1.1 T 23-04-2016 IPR000014 PAS domain RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 SMART SM00091 174 241 2.8 T 23-04-2016 IPR000014 PAS domain RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 SMART SM00086 121 163 7.6E-4 T 23-04-2016 IPR001610 PAC motif RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 SMART SM00086 246 288 3.0E-7 T 23-04-2016 IPR001610 PAC motif RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 SMART SM00086 490 532 0.0028 T 23-04-2016 IPR001610 PAC motif RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 SMART SM00086 368 410 0.0014 T 23-04-2016 IPR001610 PAC motif RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 Pfam PF08448 PAS fold 58 164 2.6E-11 T 23-04-2016 IPR013656 PAS fold-4 RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 SUPERFAMILY SSF55785 428 529 1.2E-23 T 23-04-2016 IPR000014 PAS domain RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 PANTHER PTHR24422:SF12 278 605 1.6E-155 T 23-04-2016 RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 PANTHER PTHR24422:SF12 663 817 1.6E-155 T 23-04-2016 RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 SUPERFAMILY SSF55785 305 407 2.09E-20 T 23-04-2016 IPR000014 PAS domain RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 SUPERFAMILY SSF55785 58 163 2.09E-20 T 23-04-2016 IPR000014 PAS domain RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 SUPERFAMILY SSF58104 557 838 3.49E-73 T 23-04-2016 RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 612 641 2.8E-56 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 718 747 2.8E-56 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 689 716 2.8E-56 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 766 795 2.8E-56 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 SUPERFAMILY SSF55785 182 285 6.28E-25 T 23-04-2016 IPR000014 PAS domain RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 650 837 9.8E-62 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 SMART SM00283 591 838 5.6E-92 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 Pfam PF08447 PAS fold 440 525 1.4E-12 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 428 538 1.5E-14 T 23-04-2016 IPR000014 PAS domain RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 300 410 1.5E-12 T 23-04-2016 IPR000014 PAS domain RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 180 293 3.0E-13 T 23-04-2016 IPR000014 PAS domain RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 55 166 2.5E-12 T 23-04-2016 IPR000014 PAS domain RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 Pfam PF00989 PAS fold 177 281 2.6E-10 T 23-04-2016 IPR013767 PAS fold GO:0006355 RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 Gene3D G3DSA:3.30.450.20 428 531 2.3E-21 T 23-04-2016 RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 Gene3D G3DSA:3.30.450.20 186 287 5.5E-23 T 23-04-2016 RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 Gene3D G3DSA:3.30.450.20 58 162 1.3E-18 T 23-04-2016 RPE_RS06055 fafe92bf0f50f4e0a10adfcf44084252 910 Gene3D G3DSA:3.30.450.20 307 409 4.7E-20 T 23-04-2016 RPE_RS23605 82b9860979a2875710c4b7c0ffd70a8f 398 PIRSF PIRSF000724 1 398 1.5E-141 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RPE_RS23605 82b9860979a2875710c4b7c0ffd70a8f 398 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 7 397 38.719 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RPE_RS23605 82b9860979a2875710c4b7c0ffd70a8f 398 Pfam PF00162 Phosphoglycerate kinase 8 387 6.5E-142 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RPE_RS23605 82b9860979a2875710c4b7c0ffd70a8f 398 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 17 27 - T 23-04-2016 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RPE_RS23605 82b9860979a2875710c4b7c0ffd70a8f 398 Gene3D G3DSA:3.40.50.1260 6 179 3.2E-69 T 23-04-2016 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RPE_RS23605 82b9860979a2875710c4b7c0ffd70a8f 398 SUPERFAMILY SSF53748 5 396 1.65E-145 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RPE_RS23605 82b9860979a2875710c4b7c0ffd70a8f 398 PANTHER PTHR11406 6 395 6.1E-189 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RPE_RS23605 82b9860979a2875710c4b7c0ffd70a8f 398 Gene3D G3DSA:3.40.50.1270 180 385 1.0E-74 T 23-04-2016 IPR015901 Phosphoglycerate kinase, C-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RPE_RS23605 82b9860979a2875710c4b7c0ffd70a8f 398 PRINTS PR00477 Phosphoglycerate kinase family signature 373 390 2.7E-79 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RPE_RS23605 82b9860979a2875710c4b7c0ffd70a8f 398 PRINTS PR00477 Phosphoglycerate kinase family signature 12 28 2.7E-79 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RPE_RS23605 82b9860979a2875710c4b7c0ffd70a8f 398 PRINTS PR00477 Phosphoglycerate kinase family signature 350 361 2.7E-79 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RPE_RS23605 82b9860979a2875710c4b7c0ffd70a8f 398 PRINTS PR00477 Phosphoglycerate kinase family signature 110 125 2.7E-79 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RPE_RS23605 82b9860979a2875710c4b7c0ffd70a8f 398 PRINTS PR00477 Phosphoglycerate kinase family signature 168 190 2.7E-79 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RPE_RS23605 82b9860979a2875710c4b7c0ffd70a8f 398 PRINTS PR00477 Phosphoglycerate kinase family signature 313 338 2.7E-79 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RPE_RS23605 82b9860979a2875710c4b7c0ffd70a8f 398 PRINTS PR00477 Phosphoglycerate kinase family signature 191 210 2.7E-79 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RPE_RS23605 82b9860979a2875710c4b7c0ffd70a8f 398 PRINTS PR00477 Phosphoglycerate kinase family signature 138 160 2.7E-79 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RPE_RS23605 82b9860979a2875710c4b7c0ffd70a8f 398 PRINTS PR00477 Phosphoglycerate kinase family signature 33 55 2.7E-79 T 23-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 RPE_RS21035 65fe56796ae9f31dd060a25185341281 241 Gene3D G3DSA:3.40.50.300 3 227 5.0E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS21035 65fe56796ae9f31dd060a25185341281 241 PANTHER PTHR24220:SF568 6 233 1.1E-96 T 23-04-2016 RPE_RS21035 65fe56796ae9f31dd060a25185341281 241 SUPERFAMILY SSF52540 4 227 3.33E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS21035 65fe56796ae9f31dd060a25185341281 241 SMART SM00382 29 209 5.7E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS21035 65fe56796ae9f31dd060a25185341281 241 Pfam PF00005 ABC transporter 22 159 1.9E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS21035 65fe56796ae9f31dd060a25185341281 241 PANTHER PTHR24220 6 233 1.1E-96 T 23-04-2016 RPE_RS21035 65fe56796ae9f31dd060a25185341281 241 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS19525 acd015be337489681da5cccef392d018 905 Gene3D G3DSA:3.30.300.30 789 903 2.2E-11 T 23-04-2016 RPE_RS19525 acd015be337489681da5cccef392d018 905 PANTHER PTHR36932:SF1 448 826 1.4E-49 T 23-04-2016 RPE_RS19525 acd015be337489681da5cccef392d018 905 Pfam PF00501 AMP-binding enzyme 554 750 3.6E-7 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS19525 acd015be337489681da5cccef392d018 905 Gene3D G3DSA:3.40.50.980 550 694 1.9E-4 T 23-04-2016 RPE_RS19525 acd015be337489681da5cccef392d018 905 PANTHER PTHR36932 448 826 1.4E-49 T 23-04-2016 RPE_RS19525 acd015be337489681da5cccef392d018 905 SUPERFAMILY SSF56801 461 860 1.44E-34 T 23-04-2016 RPE_RS19525 acd015be337489681da5cccef392d018 905 Pfam PF14535 AMP-binding enzyme C-terminal domain 804 903 3.6E-8 T 23-04-2016 IPR028154 AMP-dependent ligase, C-terminal RPE_RS19525 acd015be337489681da5cccef392d018 905 Pfam PF05893 Acyl-CoA reductase (LuxC) 35 442 6.4E-93 T 23-04-2016 IPR008670 Acyl-CoA reductase, LuxC GO:0003995|GO:0008218|GO:0055114 KEGG: 00073+1.2.1.50|MetaCyc: PWY-7723|UniPathway: UPA00569 RPE_RS19525 acd015be337489681da5cccef392d018 905 SUPERFAMILY SSF53720 34 434 3.8E-15 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RPE_RS23025 965f6b58778169ac14bb4f3558920075 503 Gene3D G3DSA:3.40.50.980 183 315 3.1E-21 T 23-04-2016 RPE_RS23025 965f6b58778169ac14bb4f3558920075 503 Pfam PF00501 AMP-binding enzyme 14 406 2.4E-76 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS23025 965f6b58778169ac14bb4f3558920075 503 Gene3D G3DSA:3.40.50.980 7 119 6.5E-26 T 23-04-2016 RPE_RS23025 965f6b58778169ac14bb4f3558920075 503 Gene3D G3DSA:3.40.50.980 151 182 6.5E-26 T 23-04-2016 RPE_RS23025 965f6b58778169ac14bb4f3558920075 503 Gene3D G3DSA:3.30.300.30 401 498 7.1E-32 T 23-04-2016 RPE_RS23025 965f6b58778169ac14bb4f3558920075 503 SUPERFAMILY SSF56801 6 499 1.07E-128 T 23-04-2016 RPE_RS23025 965f6b58778169ac14bb4f3558920075 503 Pfam PF13193 AMP-binding enzyme C-terminal domain 415 489 8.5E-18 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RPE_RS23025 965f6b58778169ac14bb4f3558920075 503 Gene3D G3DSA:2.30.38.10 322 394 6.6E-28 T 23-04-2016 RPE_RS23025 965f6b58778169ac14bb4f3558920075 503 PANTHER PTHR24096 7 493 2.9E-132 T 23-04-2016 RPE_RS16560 0479dc5cae15df105a549faf58f02587 220 SMART SM00072 14 197 2.5E-62 T 23-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit RPE_RS16560 0479dc5cae15df105a549faf58f02587 220 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 16 194 1.9E-71 T 23-04-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 RPE_RS16560 0479dc5cae15df105a549faf58f02587 220 Pfam PF00625 Guanylate kinase 18 195 1.5E-49 T 23-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit RPE_RS16560 0479dc5cae15df105a549faf58f02587 220 ProSitePatterns PS00856 Guanylate kinase-like signature. 49 66 - T 23-04-2016 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 RPE_RS16560 0479dc5cae15df105a549faf58f02587 220 Hamap MF_00328 Guanylate kinase [gmk]. 13 197 36.825 T 23-04-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 RPE_RS16560 0479dc5cae15df105a549faf58f02587 220 Gene3D G3DSA:3.30.63.10 44 96 8.7E-28 T 23-04-2016 RPE_RS16560 0479dc5cae15df105a549faf58f02587 220 SUPERFAMILY SSF52540 13 200 6.55E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16560 0479dc5cae15df105a549faf58f02587 220 Gene3D G3DSA:3.40.50.300 97 207 2.7E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16560 0479dc5cae15df105a549faf58f02587 220 Gene3D G3DSA:3.40.50.300 13 37 2.7E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16560 0479dc5cae15df105a549faf58f02587 220 PANTHER PTHR23117 9 218 4.5E-90 T 23-04-2016 RPE_RS16560 0479dc5cae15df105a549faf58f02587 220 PANTHER PTHR23117:SF13 9 218 4.5E-90 T 23-04-2016 RPE_RS06295 99d44f31c9a3dbd037324fec07106280 78 PANTHER PTHR35177:SF2 1 70 1.6E-24 T 23-04-2016 RPE_RS06295 99d44f31c9a3dbd037324fec07106280 78 SUPERFAMILY SSF159127 1 72 5.62E-23 T 23-04-2016 RPE_RS06295 99d44f31c9a3dbd037324fec07106280 78 PANTHER PTHR35177 1 70 1.6E-24 T 23-04-2016 RPE_RS06295 99d44f31c9a3dbd037324fec07106280 78 Pfam PF01455 HupF/HypC family 1 66 1.0E-25 T 23-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RPE_RS06295 99d44f31c9a3dbd037324fec07106280 78 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 1 73 1.3E-23 T 23-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RPE_RS06295 99d44f31c9a3dbd037324fec07106280 78 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 18 34 2.8E-21 T 23-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RPE_RS06295 99d44f31c9a3dbd037324fec07106280 78 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 39 55 2.8E-21 T 23-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RPE_RS06295 99d44f31c9a3dbd037324fec07106280 78 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 57 69 2.8E-21 T 23-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RPE_RS06295 99d44f31c9a3dbd037324fec07106280 78 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 2.8E-21 T 23-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RPE_RS19185 8dde0c04bf60ab137f827449963b16f5 201 SUPERFAMILY SSF46689 5 82 4.74E-18 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS19185 8dde0c04bf60ab137f827449963b16f5 201 SUPERFAMILY SSF48498 78 194 1.16E-7 T 23-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RPE_RS19185 8dde0c04bf60ab137f827449963b16f5 201 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 8.4E-9 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS19185 8dde0c04bf60ab137f827449963b16f5 201 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 8.4E-9 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS19185 8dde0c04bf60ab137f827449963b16f5 201 PANTHER PTHR30055 7 162 8.9E-22 T 23-04-2016 RPE_RS19185 8dde0c04bf60ab137f827449963b16f5 201 Gene3D G3DSA:1.10.357.10 3 193 2.2E-36 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RPE_RS19185 8dde0c04bf60ab137f827449963b16f5 201 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 56 5.7E-16 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS24785 b3c99a866583677cfba4cb6a235f119e 1010 Pfam PF00072 Response regulator receiver domain 893 978 1.7E-13 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS24785 b3c99a866583677cfba4cb6a235f119e 1010 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 750 869 9.6E-15 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS24785 b3c99a866583677cfba4cb6a235f119e 1010 SMART SM00387 749 871 9.0E-22 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS24785 b3c99a866583677cfba4cb6a235f119e 1010 SUPERFAMILY SSF55874 699 873 7.07E-34 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS24785 b3c99a866583677cfba4cb6a235f119e 1010 SMART SM00448 891 1002 2.4E-16 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS24785 b3c99a866583677cfba4cb6a235f119e 1010 Pfam PF08447 PAS fold 375 450 8.9E-8 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 RPE_RS24785 b3c99a866583677cfba4cb6a235f119e 1010 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 545 603 9.3E-8 T 23-04-2016 IPR000014 PAS domain RPE_RS24785 b3c99a866583677cfba4cb6a235f119e 1010 Gene3D G3DSA:3.30.450.20 100 174 5.9E-4 T 23-04-2016 RPE_RS24785 b3c99a866583677cfba4cb6a235f119e 1010 SMART SM00086 554 596 0.033 T 23-04-2016 IPR001610 PAC motif RPE_RS24785 b3c99a866583677cfba4cb6a235f119e 1010 SMART SM00086 423 463 0.28 T 23-04-2016 IPR001610 PAC motif RPE_RS24785 b3c99a866583677cfba4cb6a235f119e 1010 Gene3D G3DSA:3.30.450.20 341 460 5.9E-17 T 23-04-2016 RPE_RS24785 b3c99a866583677cfba4cb6a235f119e 1010 SUPERFAMILY SSF55785 339 461 5.58E-15 T 23-04-2016 IPR000014 PAS domain RPE_RS24785 b3c99a866583677cfba4cb6a235f119e 1010 Gene3D G3DSA:3.30.565.10 710 869 3.6E-31 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS24785 b3c99a866583677cfba4cb6a235f119e 1010 Gene3D G3DSA:3.40.50.2300 891 1005 3.2E-25 T 23-04-2016 RPE_RS24785 b3c99a866583677cfba4cb6a235f119e 1010 SUPERFAMILY SSF52172 893 1005 1.39E-20 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS24785 b3c99a866583677cfba4cb6a235f119e 1010 SMART SM00388 643 708 6.7E-6 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS24785 b3c99a866583677cfba4cb6a235f119e 1010 Gene3D G3DSA:3.30.450.20 461 594 7.7E-17 T 23-04-2016 RPE_RS24785 b3c99a866583677cfba4cb6a235f119e 1010 Pfam PF13426 PAS domain 547 594 2.1E-4 T 23-04-2016 IPR000014 PAS domain RPE_RS24785 b3c99a866583677cfba4cb6a235f119e 1010 SUPERFAMILY SSF47384 633 706 6.47E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS24785 b3c99a866583677cfba4cb6a235f119e 1010 PRINTS PR00344 Bacterial sensor protein C-terminal signature 800 814 1.9E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS24785 b3c99a866583677cfba4cb6a235f119e 1010 PRINTS PR00344 Bacterial sensor protein C-terminal signature 855 868 1.9E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS24785 b3c99a866583677cfba4cb6a235f119e 1010 PRINTS PR00344 Bacterial sensor protein C-terminal signature 831 849 1.9E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS24785 b3c99a866583677cfba4cb6a235f119e 1010 PRINTS PR00344 Bacterial sensor protein C-terminal signature 818 828 1.9E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS24785 b3c99a866583677cfba4cb6a235f119e 1010 PANTHER PTHR24423 639 1005 1.4E-153 T 23-04-2016 RPE_RS24785 b3c99a866583677cfba4cb6a235f119e 1010 PANTHER PTHR24423 459 611 1.4E-153 T 23-04-2016 RPE_RS24785 b3c99a866583677cfba4cb6a235f119e 1010 PANTHER PTHR24423:SF438 639 1005 1.4E-153 T 23-04-2016 RPE_RS24785 b3c99a866583677cfba4cb6a235f119e 1010 PANTHER PTHR24423:SF438 459 611 1.4E-153 T 23-04-2016 RPE_RS24785 b3c99a866583677cfba4cb6a235f119e 1010 SUPERFAMILY SSF55785 460 594 1.13E-16 T 23-04-2016 IPR000014 PAS domain RPE_RS17665 1d0f7dc64da901f23152e5b837b86ef2 266 PANTHER PTHR12318 4 256 5.0E-59 T 23-04-2016 RPE_RS17665 1d0f7dc64da901f23152e5b837b86ef2 266 PANTHER PTHR12318:SF0 4 256 5.0E-59 T 23-04-2016 RPE_RS17665 1d0f7dc64da901f23152e5b837b86ef2 266 SUPERFAMILY SSF55811 139 201 7.93E-15 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS17665 1d0f7dc64da901f23152e5b837b86ef2 266 SUPERFAMILY SSF55811 9 92 7.93E-15 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS17665 1d0f7dc64da901f23152e5b837b86ef2 266 Gene3D G3DSA:3.90.79.10 5 96 6.8E-18 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS17665 1d0f7dc64da901f23152e5b837b86ef2 266 Gene3D G3DSA:3.90.79.10 140 208 6.8E-18 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS15005 b969810814e8acb228d875871b960258 160 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 116 133 - T 23-04-2016 IPR001882 Biotin-binding site RPE_RS15005 b969810814e8acb228d875871b960258 160 Pfam PF00364 Biotin-requiring enzyme 87 159 1.8E-20 T 23-04-2016 IPR000089 Biotin/lipoyl attachment RPE_RS15005 b969810814e8acb228d875871b960258 160 Gene3D G3DSA:2.40.50.100 84 160 1.8E-27 T 23-04-2016 RPE_RS15005 b969810814e8acb228d875871b960258 160 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 106 120 1.1E-10 T 23-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 RPE_RS15005 b969810814e8acb228d875871b960258 160 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 89 102 1.1E-10 T 23-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 RPE_RS15005 b969810814e8acb228d875871b960258 160 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 121 134 1.1E-10 T 23-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 RPE_RS15005 b969810814e8acb228d875871b960258 160 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 22 160 3.8E-36 T 23-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 RPE_RS15005 b969810814e8acb228d875871b960258 160 PANTHER PTHR23151 22 160 2.4E-30 T 23-04-2016 RPE_RS15005 b969810814e8acb228d875871b960258 160 SUPERFAMILY SSF51230 85 160 2.22E-23 T 23-04-2016 IPR011053 Single hybrid motif RPE_RS15275 b61b84517e1802351f1dfbf1558587d8 275 PANTHER PTHR34383 25 275 9.0E-162 T 23-04-2016 RPE_RS15275 b61b84517e1802351f1dfbf1558587d8 275 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 22 244 8.4E-107 T 23-04-2016 IPR022488 Polyphosphate kinase-2-related RPE_RS15275 b61b84517e1802351f1dfbf1558587d8 275 Gene3D G3DSA:3.40.50.300 15 254 8.1E-105 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15275 b61b84517e1802351f1dfbf1558587d8 275 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 22 245 2.2E-113 T 23-04-2016 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 RPE_RS15275 b61b84517e1802351f1dfbf1558587d8 275 PIRSF PIRSF028756 5 275 2.2E-126 T 23-04-2016 IPR016898 Polyphosphate kinase 2 RPE_RS15275 b61b84517e1802351f1dfbf1558587d8 275 SUPERFAMILY SSF52540 52 240 7.58E-32 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15275 b61b84517e1802351f1dfbf1558587d8 275 PANTHER PTHR34383:SF1 25 275 9.0E-162 T 23-04-2016 RPE_RS19655 10f128046bc1223832dfe6f31239bca8 216 Pfam PF04972 BON domain 77 143 3.5E-17 T 23-04-2016 IPR007055 BON domain RPE_RS19655 10f128046bc1223832dfe6f31239bca8 216 Pfam PF04972 BON domain 150 213 2.6E-15 T 23-04-2016 IPR007055 BON domain RPE_RS19655 10f128046bc1223832dfe6f31239bca8 216 Pfam PF04972 BON domain 2 69 7.8E-15 T 23-04-2016 IPR007055 BON domain RPE_RS19655 10f128046bc1223832dfe6f31239bca8 216 PANTHER PTHR34606:SF2 1 215 7.3E-35 T 23-04-2016 RPE_RS19655 10f128046bc1223832dfe6f31239bca8 216 PANTHER PTHR34606 1 215 7.3E-35 T 23-04-2016 RPE_RS19655 10f128046bc1223832dfe6f31239bca8 216 SMART SM00749 7 70 12.0 T 23-04-2016 IPR014004 Transport-associated and nodulation domain, bacteria RPE_RS19655 10f128046bc1223832dfe6f31239bca8 216 SMART SM00749 81 144 27.0 T 23-04-2016 IPR014004 Transport-associated and nodulation domain, bacteria RPE_RS19655 10f128046bc1223832dfe6f31239bca8 216 SMART SM00749 153 215 0.05 T 23-04-2016 IPR014004 Transport-associated and nodulation domain, bacteria RPE_RS04655 1e5be9b232aadc32fc348ea7fb22f05c 680 Gene3D G3DSA:3.40.1440.10 76 156 3.1E-10 T 23-04-2016 IPR027299 GIY-YIG domain RPE_RS04655 1e5be9b232aadc32fc348ea7fb22f05c 680 Gene3D G3DSA:4.10.860.10 247 302 6.5E-13 T 23-04-2016 IPR001943 UVR domain GO:0005515 RPE_RS04655 1e5be9b232aadc32fc348ea7fb22f05c 680 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 442 609 6.4E-52 T 23-04-2016 IPR001162 UvrC family homology region RPE_RS04655 1e5be9b232aadc32fc348ea7fb22f05c 680 SMART SM00465 76 157 9.6E-18 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily RPE_RS04655 1e5be9b232aadc32fc348ea7fb22f05c 680 Gene3D G3DSA:1.10.150.20 625 676 1.7E-20 T 23-04-2016 RPE_RS04655 1e5be9b232aadc32fc348ea7fb22f05c 680 PANTHER PTHR30562:SF1 40 675 4.5E-256 T 23-04-2016 RPE_RS04655 1e5be9b232aadc32fc348ea7fb22f05c 680 Hamap MF_00203 UvrABC system protein C [uvrC]. 63 674 27.328 T 23-04-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 RPE_RS04655 1e5be9b232aadc32fc348ea7fb22f05c 680 SUPERFAMILY SSF46600 250 302 7.06E-11 T 23-04-2016 IPR001943 UVR domain GO:0005515 RPE_RS04655 1e5be9b232aadc32fc348ea7fb22f05c 680 Pfam PF14520 Helix-hairpin-helix domain 625 672 6.7E-10 T 23-04-2016 RPE_RS04655 1e5be9b232aadc32fc348ea7fb22f05c 680 PANTHER PTHR30562 40 675 4.5E-256 T 23-04-2016 RPE_RS04655 1e5be9b232aadc32fc348ea7fb22f05c 680 SUPERFAMILY SSF47781 586 676 7.63E-22 T 23-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 RPE_RS04655 1e5be9b232aadc32fc348ea7fb22f05c 680 Pfam PF01541 GIY-YIG catalytic domain 78 150 7.4E-9 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily RPE_RS04655 1e5be9b232aadc32fc348ea7fb22f05c 680 Pfam PF02151 UvrB/uvrC motif 268 297 2.4E-7 T 23-04-2016 IPR001943 UVR domain GO:0005515 RPE_RS04655 1e5be9b232aadc32fc348ea7fb22f05c 680 SUPERFAMILY SSF82771 76 159 5.89E-21 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily RPE_RS04655 1e5be9b232aadc32fc348ea7fb22f05c 680 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 70 654 1.7E-162 T 23-04-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 RPE_RS04655 1e5be9b232aadc32fc348ea7fb22f05c 680 SMART SM00278 623 642 43.0 T 23-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RPE_RS04655 1e5be9b232aadc32fc348ea7fb22f05c 680 SMART SM00278 655 674 2.5 T 23-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RPE_RS01405 08353c89c4cd6bfa9fee35f85b2cfcff 135 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 3 128 1.9E-27 T 23-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RPE_RS01405 08353c89c4cd6bfa9fee35f85b2cfcff 135 PANTHER PTHR13822 1 115 5.5E-33 T 23-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RPE_RS01405 08353c89c4cd6bfa9fee35f85b2cfcff 135 SUPERFAMILY SSF51344 3 82 7.32E-23 T 23-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 RPE_RS01405 08353c89c4cd6bfa9fee35f85b2cfcff 135 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 4 82 1.6E-25 T 23-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 RPE_RS01405 08353c89c4cd6bfa9fee35f85b2cfcff 135 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 2 121 18.449 T 23-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RPE_RS01405 08353c89c4cd6bfa9fee35f85b2cfcff 135 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 9 82 4.0E-35 T 23-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 RPE_RS01405 08353c89c4cd6bfa9fee35f85b2cfcff 135 Gene3D G3DSA:2.60.15.10 3 89 1.1E-29 T 23-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 RPE_RS22375 0859ac77cfe8205797ae43e17a9e960a 384 PIRSF PIRSF029347 1 384 8.3E-141 T 23-04-2016 IPR014555 RecF-like RPE_RS22375 0859ac77cfe8205797ae43e17a9e960a 384 PANTHER PTHR32182:SF13 1 365 1.7E-77 T 23-04-2016 RPE_RS22375 0859ac77cfe8205797ae43e17a9e960a 384 SUPERFAMILY SSF52540 259 362 7.13E-24 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS22375 0859ac77cfe8205797ae43e17a9e960a 384 SUPERFAMILY SSF52540 1 82 7.13E-24 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS22375 0859ac77cfe8205797ae43e17a9e960a 384 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 234 350 2.5E-18 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RPE_RS22375 0859ac77cfe8205797ae43e17a9e960a 384 Gene3D G3DSA:3.40.50.300 1 110 3.3E-29 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS22375 0859ac77cfe8205797ae43e17a9e960a 384 Gene3D G3DSA:3.40.50.300 194 359 3.3E-29 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS22375 0859ac77cfe8205797ae43e17a9e960a 384 PANTHER PTHR32182 1 365 1.7E-77 T 23-04-2016 RPE_RS22375 0859ac77cfe8205797ae43e17a9e960a 384 Pfam PF13175 AAA ATPase domain 1 47 6.6E-8 T 23-04-2016 RPE_RS08855 88e875e0cee9a41734662f222a1630f3 637 SUPERFAMILY SSF52540 453 622 7.97E-32 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS08855 88e875e0cee9a41734662f222a1630f3 637 Pfam PF00009 Elongation factor Tu GTP binding domain 21 210 5.1E-47 T 23-04-2016 RPE_RS08855 88e875e0cee9a41734662f222a1630f3 637 Gene3D G3DSA:3.40.50.300 435 628 1.1E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS08855 88e875e0cee9a41734662f222a1630f3 637 PRINTS PR00315 GTP-binding elongation factor signature 116 127 5.5E-19 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS08855 88e875e0cee9a41734662f222a1630f3 637 PRINTS PR00315 GTP-binding elongation factor signature 80 88 5.5E-19 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS08855 88e875e0cee9a41734662f222a1630f3 637 PRINTS PR00315 GTP-binding elongation factor signature 153 162 5.5E-19 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS08855 88e875e0cee9a41734662f222a1630f3 637 PRINTS PR00315 GTP-binding elongation factor signature 22 35 5.5E-19 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS08855 88e875e0cee9a41734662f222a1630f3 637 PRINTS PR00315 GTP-binding elongation factor signature 100 110 5.5E-19 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS08855 88e875e0cee9a41734662f222a1630f3 637 Gene3D G3DSA:2.40.30.10 339 425 2.0E-7 T 23-04-2016 RPE_RS08855 88e875e0cee9a41734662f222a1630f3 637 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 441 616 8.3E-58 T 23-04-2016 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: REACT_13433|UniPathway: UPA00140 RPE_RS08855 88e875e0cee9a41734662f222a1630f3 637 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 73 88 - T 23-04-2016 IPR031157 Tr-type G domain, conserved site RPE_RS08855 88e875e0cee9a41734662f222a1630f3 637 Gene3D G3DSA:2.40.30.10 234 338 1.1E-19 T 23-04-2016 RPE_RS08855 88e875e0cee9a41734662f222a1630f3 637 Gene3D G3DSA:3.40.50.300 18 224 3.7E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS08855 88e875e0cee9a41734662f222a1630f3 637 SUPERFAMILY SSF50447 234 319 9.15E-15 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain RPE_RS08855 88e875e0cee9a41734662f222a1630f3 637 SUPERFAMILY SSF50465 324 423 1.21E-21 T 23-04-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RPE_RS08855 88e875e0cee9a41734662f222a1630f3 637 SUPERFAMILY SSF52540 18 244 2.3E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS08855 88e875e0cee9a41734662f222a1630f3 637 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 453 624 32.8 T 23-04-2016 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: REACT_13433|UniPathway: UPA00140 RPE_RS08855 88e875e0cee9a41734662f222a1630f3 637 PANTHER PTHR23115:SF170 3 336 1.1E-72 T 23-04-2016 RPE_RS08855 88e875e0cee9a41734662f222a1630f3 637 Pfam PF01583 Adenylylsulphate kinase 455 606 4.8E-56 T 23-04-2016 RPE_RS08855 88e875e0cee9a41734662f222a1630f3 637 PANTHER PTHR23115 3 336 1.1E-72 T 23-04-2016 RPE_RS08365 9e7b08a59f9b7647952ffa8fcead0742 233 PANTHER PTHR30388 16 223 5.3E-65 T 23-04-2016 RPE_RS08365 9e7b08a59f9b7647952ffa8fcead0742 233 Gene3D G3DSA:3.40.50.720 74 108 1.9E-4 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS08365 9e7b08a59f9b7647952ffa8fcead0742 233 Gene3D G3DSA:3.40.50.720 180 199 1.9E-4 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS08365 9e7b08a59f9b7647952ffa8fcead0742 233 Pfam PF13478 XdhC Rossmann domain 77 218 3.1E-45 T 23-04-2016 IPR027051 XdhC Rossmann domain RPE_RS08365 9e7b08a59f9b7647952ffa8fcead0742 233 PANTHER PTHR30388:SF4 16 223 5.3E-65 T 23-04-2016 RPE_RS12595 3027aafa830840343b6e275e7056e76b 424 SMART SM00382 110 330 2.1E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS12595 3027aafa830840343b6e275e7056e76b 424 SUPERFAMILY SSF57716 13 48 1.2E-11 T 23-04-2016 RPE_RS12595 3027aafa830840343b6e275e7056e76b 424 Gene3D G3DSA:1.10.8.60 314 414 6.0E-36 T 23-04-2016 RPE_RS12595 3027aafa830840343b6e275e7056e76b 424 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 2 412 53.454 T 23-04-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 RPE_RS12595 3027aafa830840343b6e275e7056e76b 424 Gene3D G3DSA:3.40.50.300 291 308 1.6E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12595 3027aafa830840343b6e275e7056e76b 424 Gene3D G3DSA:3.40.50.300 64 252 1.6E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12595 3027aafa830840343b6e275e7056e76b 424 PANTHER PTHR11262 7 415 1.4E-250 T 23-04-2016 RPE_RS12595 3027aafa830840343b6e275e7056e76b 424 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 10 407 2.0E-200 T 23-04-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 RPE_RS12595 3027aafa830840343b6e275e7056e76b 424 SMART SM00994 12 51 1.7E-24 T 23-04-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 RPE_RS12595 3027aafa830840343b6e275e7056e76b 424 Pfam PF06689 ClpX C4-type zinc finger 13 50 2.7E-20 T 23-04-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 RPE_RS12595 3027aafa830840343b6e275e7056e76b 424 SUPERFAMILY SSF52540 61 394 3.81E-75 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12595 3027aafa830840343b6e275e7056e76b 424 Pfam PF07724 AAA domain (Cdc48 subfamily) 111 307 1.8E-50 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RPE_RS12595 3027aafa830840343b6e275e7056e76b 424 SMART SM01086 314 409 7.7E-31 T 23-04-2016 IPR019489 Clp ATPase, C-terminal RPE_RS12595 3027aafa830840343b6e275e7056e76b 424 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 314 385 2.7E-15 T 23-04-2016 IPR019489 Clp ATPase, C-terminal RPE_RS06310 fb3c1bdb6222515716cf379f5c842a3d 488 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 250 265 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RPE_RS06310 fb3c1bdb6222515716cf379f5c842a3d 488 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 188 201 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RPE_RS06310 fb3c1bdb6222515716cf379f5c842a3d 488 Pfam PF00158 Sigma-54 interaction domain 170 330 1.1E-65 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RPE_RS06310 fb3c1bdb6222515716cf379f5c842a3d 488 Gene3D G3DSA:1.10.10.60 431 480 5.7E-12 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS06310 fb3c1bdb6222515716cf379f5c842a3d 488 Gene3D G3DSA:3.40.50.2300 6 130 1.4E-28 T 23-04-2016 RPE_RS06310 fb3c1bdb6222515716cf379f5c842a3d 488 Pfam PF02954 Bacterial regulatory protein, Fis family 438 478 3.8E-13 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RPE_RS06310 fb3c1bdb6222515716cf379f5c842a3d 488 Gene3D G3DSA:1.10.8.60 337 412 1.7E-22 T 23-04-2016 RPE_RS06310 fb3c1bdb6222515716cf379f5c842a3d 488 SMART SM00382 184 327 1.5E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS06310 fb3c1bdb6222515716cf379f5c842a3d 488 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 444 461 8.6E-7 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RPE_RS06310 fb3c1bdb6222515716cf379f5c842a3d 488 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 461 481 8.6E-7 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RPE_RS06310 fb3c1bdb6222515716cf379f5c842a3d 488 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 377 386 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site RPE_RS06310 fb3c1bdb6222515716cf379f5c842a3d 488 SUPERFAMILY SSF52172 5 207 2.7E-33 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS06310 fb3c1bdb6222515716cf379f5c842a3d 488 Pfam PF00072 Response regulator receiver domain 7 116 6.1E-18 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS06310 fb3c1bdb6222515716cf379f5c842a3d 488 SUPERFAMILY SSF52540 169 406 9.75E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS06310 fb3c1bdb6222515716cf379f5c842a3d 488 Gene3D G3DSA:3.40.50.300 170 336 5.5E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS06310 fb3c1bdb6222515716cf379f5c842a3d 488 PANTHER PTHR32071:SF16 7 483 2.3E-192 T 23-04-2016 RPE_RS06310 fb3c1bdb6222515716cf379f5c842a3d 488 SMART SM00448 5 116 2.0E-24 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS06310 fb3c1bdb6222515716cf379f5c842a3d 488 SUPERFAMILY SSF46689 377 480 8.96E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS06310 fb3c1bdb6222515716cf379f5c842a3d 488 PANTHER PTHR32071 7 483 2.3E-192 T 23-04-2016 RPE_RS10390 19b46d5ae3059aa2bf9ffa028a92e5c4 260 Gene3D G3DSA:3.20.20.70 2 256 1.1E-50 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS10390 19b46d5ae3059aa2bf9ffa028a92e5c4 260 PANTHER PTHR34266 1 260 1.3E-145 T 23-04-2016 RPE_RS10390 19b46d5ae3059aa2bf9ffa028a92e5c4 260 SUPERFAMILY SSF110399 2 240 3.4E-81 T 23-04-2016 IPR008867 Thiazole biosynthesis GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892|UniPathway: UPA00060 RPE_RS10390 19b46d5ae3059aa2bf9ffa028a92e5c4 260 Hamap MF_00443 Thiazole synthase [thiG]. 1 255 41.387 T 23-04-2016 IPR008867 Thiazole biosynthesis GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892|UniPathway: UPA00060 RPE_RS10390 19b46d5ae3059aa2bf9ffa028a92e5c4 260 Pfam PF05690 Thiazole biosynthesis protein ThiG 4 249 1.6E-104 T 23-04-2016 RPE_RS11685 7fa2587b80a81b012a184c3712b96f4f 243 SUPERFAMILY SSF51206 9 127 5.76E-13 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like RPE_RS11685 7fa2587b80a81b012a184c3712b96f4f 243 PANTHER PTHR24567:SF22 9 223 2.9E-61 T 23-04-2016 RPE_RS11685 7fa2587b80a81b012a184c3712b96f4f 243 Pfam PF13545 Crp-like helix-turn-helix domain 150 214 8.7E-12 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RPE_RS11685 7fa2587b80a81b012a184c3712b96f4f 243 SMART SM00100 11 139 0.0089 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RPE_RS11685 7fa2587b80a81b012a184c3712b96f4f 243 Gene3D G3DSA:1.10.10.10 145 217 2.6E-10 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS11685 7fa2587b80a81b012a184c3712b96f4f 243 Gene3D G3DSA:2.60.120.10 9 127 7.9E-10 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS11685 7fa2587b80a81b012a184c3712b96f4f 243 PANTHER PTHR24567 9 223 2.9E-61 T 23-04-2016 RPE_RS11685 7fa2587b80a81b012a184c3712b96f4f 243 SUPERFAMILY SSF46785 146 221 6.34E-14 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS19905 319a7029d3f0e9343d0e3a8e8a8f0613 241 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 190 228 5.8E-10 T 23-04-2016 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RPE_RS19905 319a7029d3f0e9343d0e3a8e8a8f0613 241 SUPERFAMILY SSF52833 36 239 3.46E-68 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS19905 319a7029d3f0e9343d0e3a8e8a8f0613 241 Pfam PF00578 AhpC/TSA family 39 168 1.4E-33 T 23-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 RPE_RS19905 319a7029d3f0e9343d0e3a8e8a8f0613 241 PANTHER PTHR10681 8 238 1.3E-70 T 23-04-2016 RPE_RS19905 319a7029d3f0e9343d0e3a8e8a8f0613 241 Gene3D G3DSA:3.30.1020.10 191 238 8.1E-18 T 23-04-2016 RPE_RS19905 319a7029d3f0e9343d0e3a8e8a8f0613 241 Gene3D G3DSA:3.40.30.10 38 190 6.0E-57 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS19905 319a7029d3f0e9343d0e3a8e8a8f0613 241 PIRSF PIRSF000239 32 240 2.3E-72 T 23-04-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15 RPE_RS09500 5e33625d77878885cde043fd342928ef 369 Gene3D G3DSA:3.30.450.20 133 245 2.6E-16 T 23-04-2016 RPE_RS09500 5e33625d77878885cde043fd342928ef 369 SMART SM00342 274 359 3.1E-22 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RPE_RS09500 5e33625d77878885cde043fd342928ef 369 SMART SM00086 205 247 1.1E-5 T 23-04-2016 IPR001610 PAC motif RPE_RS09500 5e33625d77878885cde043fd342928ef 369 SMART SM00086 87 129 63.0 T 23-04-2016 IPR001610 PAC motif RPE_RS09500 5e33625d77878885cde043fd342928ef 369 Gene3D G3DSA:3.30.450.20 16 121 1.7E-16 T 23-04-2016 RPE_RS09500 5e33625d77878885cde043fd342928ef 369 Gene3D G3DSA:1.10.10.60 256 310 4.3E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS09500 5e33625d77878885cde043fd342928ef 369 Pfam PF12833 Helix-turn-helix domain 280 360 9.1E-22 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RPE_RS09500 5e33625d77878885cde043fd342928ef 369 SUPERFAMILY SSF55785 178 248 6.46E-15 T 23-04-2016 IPR000014 PAS domain RPE_RS09500 5e33625d77878885cde043fd342928ef 369 PANTHER PTHR11019 260 367 7.7E-20 T 23-04-2016 RPE_RS09500 5e33625d77878885cde043fd342928ef 369 SUPERFAMILY SSF55785 15 121 1.64E-15 T 23-04-2016 IPR000014 PAS domain RPE_RS09500 5e33625d77878885cde043fd342928ef 369 Pfam PF08447 PAS fold 175 240 8.8E-13 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 RPE_RS09500 5e33625d77878885cde043fd342928ef 369 Pfam PF08447 PAS fold 36 119 5.6E-12 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 RPE_RS09500 5e33625d77878885cde043fd342928ef 369 SMART SM00091 11 80 7.0E-7 T 23-04-2016 IPR000014 PAS domain RPE_RS09500 5e33625d77878885cde043fd342928ef 369 Gene3D G3DSA:1.10.10.60 311 359 6.0E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS09500 5e33625d77878885cde043fd342928ef 369 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 31 120 6.7E-11 T 23-04-2016 IPR000014 PAS domain RPE_RS09500 5e33625d77878885cde043fd342928ef 369 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 180 251 9.1E-6 T 23-04-2016 IPR000014 PAS domain RPE_RS09500 5e33625d77878885cde043fd342928ef 369 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 311 355 - T 23-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RPE_RS09500 5e33625d77878885cde043fd342928ef 369 SUPERFAMILY SSF46689 310 362 2.69E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS09055 afef878be1fcb7fde3655dcb59a41c0a 407 Gene3D G3DSA:1.20.1250.20 22 200 1.5E-7 T 23-04-2016 RPE_RS09055 afef878be1fcb7fde3655dcb59a41c0a 407 Gene3D G3DSA:1.20.1250.20 235 403 3.9E-5 T 23-04-2016 RPE_RS09055 afef878be1fcb7fde3655dcb59a41c0a 407 SUPERFAMILY SSF103473 21 401 1.57E-17 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS10875 b859f72c92f9ccd304b69f38f2c472f6 648 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 55 182 2.0E-16 T 23-04-2016 RPE_RS10875 b859f72c92f9ccd304b69f38f2c472f6 648 Gene3D G3DSA:3.30.565.10 49 239 2.6E-20 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS10875 b859f72c92f9ccd304b69f38f2c472f6 648 SUPERFAMILY SSF55874 189 248 1.52E-17 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS10875 b859f72c92f9ccd304b69f38f2c472f6 648 SUPERFAMILY SSF55874 47 161 1.52E-17 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS11075 8b8688e7bb24ca02f2dafe1a57bea15b 521 SUPERFAMILY SSF110921 398 505 2.48E-23 T 23-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RPE_RS11075 8b8688e7bb24ca02f2dafe1a57bea15b 521 PANTHER PTHR10277 2 514 5.9E-258 T 23-04-2016 RPE_RS11075 8b8688e7bb24ca02f2dafe1a57bea15b 521 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 206 219 - T 23-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RPE_RS11075 8b8688e7bb24ca02f2dafe1a57bea15b 521 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 19 35 - T 23-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RPE_RS11075 8b8688e7bb24ca02f2dafe1a57bea15b 521 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 9 515 42.351 T 23-04-2016 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RPE_RS11075 8b8688e7bb24ca02f2dafe1a57bea15b 521 Pfam PF08502 LeuA allosteric (dimerisation) domain 377 505 4.0E-37 T 23-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RPE_RS11075 8b8688e7bb24ca02f2dafe1a57bea15b 521 PANTHER PTHR10277:SF9 2 514 5.9E-258 T 23-04-2016 RPE_RS11075 8b8688e7bb24ca02f2dafe1a57bea15b 521 SMART SM00917 376 506 1.4E-41 T 23-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RPE_RS11075 8b8688e7bb24ca02f2dafe1a57bea15b 521 Pfam PF00682 HMGL-like 11 280 3.0E-96 T 23-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 RPE_RS11075 8b8688e7bb24ca02f2dafe1a57bea15b 521 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 11 503 1.1E-210 T 23-04-2016 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RPE_RS11075 8b8688e7bb24ca02f2dafe1a57bea15b 521 SUPERFAMILY SSF51569 4 298 7.69E-100 T 23-04-2016 RPE_RS11075 8b8688e7bb24ca02f2dafe1a57bea15b 521 Gene3D G3DSA:3.20.20.70 3 354 1.1E-146 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS04085 a46a4d598f3ac488e23e7081a90821ff 397 SUPERFAMILY SSF53756 12 376 1.18E-68 T 23-04-2016 RPE_RS04085 a46a4d598f3ac488e23e7081a90821ff 397 Pfam PF00534 Glycosyl transferases group 1 199 354 8.9E-29 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 RPE_RS04085 a46a4d598f3ac488e23e7081a90821ff 397 PANTHER PTHR12526 129 376 2.0E-51 T 23-04-2016 RPE_RS04085 a46a4d598f3ac488e23e7081a90821ff 397 PANTHER PTHR12526 15 104 2.0E-51 T 23-04-2016 RPE_RS04085 a46a4d598f3ac488e23e7081a90821ff 397 Pfam PF13439 Glycosyltransferase Family 4 15 188 4.5E-17 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RPE_RS04085 a46a4d598f3ac488e23e7081a90821ff 397 Gene3D G3DSA:3.40.50.2000 169 354 1.0E-30 T 23-04-2016 RPE_RS01815 877ef64c120d93e7480503110aea650c 749 Gene3D G3DSA:3.40.50.2300 472 584 1.1E-7 T 23-04-2016 RPE_RS01815 877ef64c120d93e7480503110aea650c 749 Gene3D G3DSA:1.10.287.130 239 292 5.8E-15 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS01815 877ef64c120d93e7480503110aea650c 749 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 343 453 6.2E-25 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS01815 877ef64c120d93e7480503110aea650c 749 SUPERFAMILY SSF47384 216 297 3.14E-20 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS01815 877ef64c120d93e7480503110aea650c 749 PANTHER PTHR24423 606 746 1.8E-179 T 23-04-2016 RPE_RS01815 877ef64c120d93e7480503110aea650c 749 SUPERFAMILY SSF55785 99 209 2.62E-12 T 23-04-2016 IPR000014 PAS domain RPE_RS01815 877ef64c120d93e7480503110aea650c 749 Gene3D G3DSA:3.30.565.10 297 459 1.2E-44 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS01815 877ef64c120d93e7480503110aea650c 749 Gene3D G3DSA:3.40.50.2300 615 740 1.6E-37 T 23-04-2016 RPE_RS01815 877ef64c120d93e7480503110aea650c 749 SMART SM00448 617 738 3.0E-35 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS01815 877ef64c120d93e7480503110aea650c 749 SMART SM00448 474 583 0.038 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS01815 877ef64c120d93e7480503110aea650c 749 Gene3D G3DSA:3.30.450.20 103 238 2.9E-11 T 23-04-2016 RPE_RS01815 877ef64c120d93e7480503110aea650c 749 Pfam PF00072 Response regulator receiver domain 619 738 8.5E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS01815 877ef64c120d93e7480503110aea650c 749 Pfam PF00512 His Kinase A (phospho-acceptor) domain 231 296 4.4E-17 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS01815 877ef64c120d93e7480503110aea650c 749 SMART SM00388 231 296 1.2E-23 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS01815 877ef64c120d93e7480503110aea650c 749 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 102 218 3.2E-9 T 23-04-2016 IPR000014 PAS domain RPE_RS01815 877ef64c120d93e7480503110aea650c 749 PANTHER PTHR24423:SF382 606 746 1.8E-179 T 23-04-2016 RPE_RS01815 877ef64c120d93e7480503110aea650c 749 PANTHER PTHR24423 90 459 1.8E-179 T 23-04-2016 RPE_RS01815 877ef64c120d93e7480503110aea650c 749 SUPERFAMILY SSF52172 615 739 1.17E-35 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS01815 877ef64c120d93e7480503110aea650c 749 PRINTS PR00344 Bacterial sensor protein C-terminal signature 399 409 1.3E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS01815 877ef64c120d93e7480503110aea650c 749 PRINTS PR00344 Bacterial sensor protein C-terminal signature 440 453 1.3E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS01815 877ef64c120d93e7480503110aea650c 749 PRINTS PR00344 Bacterial sensor protein C-terminal signature 416 434 1.3E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS01815 877ef64c120d93e7480503110aea650c 749 PRINTS PR00344 Bacterial sensor protein C-terminal signature 381 395 1.3E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS01815 877ef64c120d93e7480503110aea650c 749 SMART SM00387 343 456 1.9E-34 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS01815 877ef64c120d93e7480503110aea650c 749 SUPERFAMILY SSF52172 471 584 3.13E-9 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS01815 877ef64c120d93e7480503110aea650c 749 SUPERFAMILY SSF55874 286 453 5.76E-45 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS01815 877ef64c120d93e7480503110aea650c 749 SMART SM00091 106 175 0.0035 T 23-04-2016 IPR000014 PAS domain RPE_RS01815 877ef64c120d93e7480503110aea650c 749 PANTHER PTHR24423:SF382 90 459 1.8E-179 T 23-04-2016 RPE_RS13520 6de04da61ec53119859470a56cd7ec6b 242 PANTHER PTHR34298 1 242 1.9E-59 T 23-04-2016 RPE_RS13520 6de04da61ec53119859470a56cd7ec6b 242 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 30 187 4.4E-30 T 23-04-2016 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 RPE_RS13520 6de04da61ec53119859470a56cd7ec6b 242 Pfam PF04079 Segregation and condensation complex subunit ScpB 29 182 1.9E-47 T 23-04-2016 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 RPE_RS13520 6de04da61ec53119859470a56cd7ec6b 242 PANTHER PTHR34298:SF2 1 242 1.9E-59 T 23-04-2016 RPE_RS13520 6de04da61ec53119859470a56cd7ec6b 242 SUPERFAMILY SSF46785 25 94 1.58E-15 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS13520 6de04da61ec53119859470a56cd7ec6b 242 Gene3D G3DSA:1.10.10.10 27 92 2.9E-15 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS13520 6de04da61ec53119859470a56cd7ec6b 242 Gene3D G3DSA:1.10.10.10 99 174 7.1E-32 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS13520 6de04da61ec53119859470a56cd7ec6b 242 SUPERFAMILY SSF46785 100 174 8.16E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS03215 043ddec6ff273ef1c413a4dd18f86cde 113 PANTHER PTHR33992 2 111 1.7E-23 T 23-04-2016 RPE_RS03215 043ddec6ff273ef1c413a4dd18f86cde 113 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 2 106 3.1E-16 T 23-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 RPE_RS03215 043ddec6ff273ef1c413a4dd18f86cde 113 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 47 61 - T 23-04-2016 IPR020539 Ribonuclease P, conserved site GO:0004526 RPE_RS03215 043ddec6ff273ef1c413a4dd18f86cde 113 SUPERFAMILY SSF54211 3 108 1.19E-23 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RPE_RS03215 043ddec6ff273ef1c413a4dd18f86cde 113 Pfam PF00825 Ribonuclease P 2 105 4.0E-20 T 23-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 RPE_RS03215 043ddec6ff273ef1c413a4dd18f86cde 113 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 4 86 6.0E-21 T 23-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 RPE_RS03215 043ddec6ff273ef1c413a4dd18f86cde 113 Gene3D G3DSA:3.30.230.10 2 109 8.7E-27 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RPE_RS03215 043ddec6ff273ef1c413a4dd18f86cde 113 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 1 108 12.751 T 23-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 RPE_RS18920 bcc5eabfa1fc0ab977f93bae705b3f68 236 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS18920 bcc5eabfa1fc0ab977f93bae705b3f68 236 PANTHER PTHR24220 6 235 7.7E-121 T 23-04-2016 RPE_RS18920 bcc5eabfa1fc0ab977f93bae705b3f68 236 SUPERFAMILY SSF52540 3 233 4.31E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18920 bcc5eabfa1fc0ab977f93bae705b3f68 236 Pfam PF00005 ABC transporter 20 163 7.4E-28 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS18920 bcc5eabfa1fc0ab977f93bae705b3f68 236 SMART SM00382 29 215 1.9E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS18920 bcc5eabfa1fc0ab977f93bae705b3f68 236 Gene3D G3DSA:3.40.50.300 2 229 1.2E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18920 bcc5eabfa1fc0ab977f93bae705b3f68 236 PANTHER PTHR24220:SF568 6 235 7.7E-121 T 23-04-2016 RPE_RS05250 d3fb27b1501415a1f9fef04d77fa4e0f 400 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 15 372 3.7E-90 T 23-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 RPE_RS05250 d3fb27b1501415a1f9fef04d77fa4e0f 400 SUPERFAMILY SSF52402 13 257 3.97E-51 T 23-04-2016 RPE_RS05250 d3fb27b1501415a1f9fef04d77fa4e0f 400 Pfam PF03054 tRNA methyl transferase 15 372 3.1E-106 T 23-04-2016 RPE_RS05250 d3fb27b1501415a1f9fef04d77fa4e0f 400 Gene3D G3DSA:2.30.30.280 230 284 3.5E-17 T 23-04-2016 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 RPE_RS05250 d3fb27b1501415a1f9fef04d77fa4e0f 400 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 14 373 38.623 T 23-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 RPE_RS05250 d3fb27b1501415a1f9fef04d77fa4e0f 400 PANTHER PTHR11933 6 398 5.4E-162 T 23-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 RPE_RS05250 d3fb27b1501415a1f9fef04d77fa4e0f 400 Gene3D G3DSA:2.40.30.10 288 378 2.8E-18 T 23-04-2016 RPE_RS05250 d3fb27b1501415a1f9fef04d77fa4e0f 400 Gene3D G3DSA:3.40.50.620 11 221 3.9E-80 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS05250 d3fb27b1501415a1f9fef04d77fa4e0f 400 PANTHER PTHR11933:SF10 6 398 5.4E-162 T 23-04-2016 RPE_RS11665 a8b0c52e5adcd068f770effc21c4f82b 207 PANTHER PTHR39327:SF2 2 204 9.6E-98 T 23-04-2016 RPE_RS11665 a8b0c52e5adcd068f770effc21c4f82b 207 PANTHER PTHR39327 2 204 9.6E-98 T 23-04-2016 RPE_RS11665 a8b0c52e5adcd068f770effc21c4f82b 207 Pfam PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP 37 195 4.7E-70 T 23-04-2016 IPR010319 Transglutaminase-like cysteine peptidase, predicted RPE_RS21775 84b9f4a7387adfcf49d8b19ee1bfae19 310 Gene3D G3DSA:3.60.15.10 27 249 2.1E-38 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS21775 84b9f4a7387adfcf49d8b19ee1bfae19 310 PANTHER PTHR23131:SF4 30 302 6.6E-85 T 23-04-2016 RPE_RS21775 84b9f4a7387adfcf49d8b19ee1bfae19 310 Pfam PF00753 Metallo-beta-lactamase superfamily 45 223 2.7E-18 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS21775 84b9f4a7387adfcf49d8b19ee1bfae19 310 PANTHER PTHR23131 30 302 6.6E-85 T 23-04-2016 RPE_RS21775 84b9f4a7387adfcf49d8b19ee1bfae19 310 SMART SM00849 47 223 1.5E-20 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS21775 84b9f4a7387adfcf49d8b19ee1bfae19 310 SUPERFAMILY SSF56281 27 295 3.66E-48 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS08845 959e6d6bdbe460d8ad6b41f5875fae5c 275 SUPERFAMILY SSF161098 13 260 6.28E-54 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS08845 959e6d6bdbe460d8ad6b41f5875fae5c 275 Gene3D G3DSA:1.10.3720.10 15 263 1.2E-48 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS08845 959e6d6bdbe460d8ad6b41f5875fae5c 275 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 5 268 1.2E-113 T 23-04-2016 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 RPE_RS08845 959e6d6bdbe460d8ad6b41f5875fae5c 275 PANTHER PTHR30406:SF6 3 273 8.1E-130 T 23-04-2016 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 RPE_RS08845 959e6d6bdbe460d8ad6b41f5875fae5c 275 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 10 264 1.3E-91 T 23-04-2016 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 RPE_RS08845 959e6d6bdbe460d8ad6b41f5875fae5c 275 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 74 265 8.0E-28 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS08845 959e6d6bdbe460d8ad6b41f5875fae5c 275 PANTHER PTHR30406 3 273 8.1E-130 T 23-04-2016 RPE_RS01765 d26df2861fd40329137fe0449e5f92e6 362 SUPERFAMILY SSF55781 89 361 2.01E-54 T 23-04-2016 IPR029016 GAF domain-like RPE_RS01765 d26df2861fd40329137fe0449e5f92e6 362 SUPERFAMILY SSF46785 19 101 2.07E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS01765 d26df2861fd40329137fe0449e5f92e6 362 PIRSF PIRSF005485 16 362 3.0E-104 T 23-04-2016 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 RPE_RS01765 d26df2861fd40329137fe0449e5f92e6 362 PANTHER PTHR34824 7 360 1.3E-110 T 23-04-2016 RPE_RS01765 d26df2861fd40329137fe0449e5f92e6 362 Gene3D G3DSA:1.10.10.10 16 101 2.4E-34 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS01765 d26df2861fd40329137fe0449e5f92e6 362 TIGRFAM TIGR00331 hrcA: heat-inducible transcription repressor HrcA 20 359 2.9E-98 T 23-04-2016 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 RPE_RS01765 d26df2861fd40329137fe0449e5f92e6 362 Pfam PF01628 HrcA protein C terminal domain 124 346 4.4E-52 T 23-04-2016 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal GO:0003677|GO:0006355 RPE_RS01765 d26df2861fd40329137fe0449e5f92e6 362 Gene3D G3DSA:3.30.450.40 195 360 1.6E-33 T 23-04-2016 IPR029016 GAF domain-like RPE_RS01765 d26df2861fd40329137fe0449e5f92e6 362 Hamap MF_00081 Heat-inducible transcription repressor HrcA [hrcA]. 18 353 29.472 T 23-04-2016 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 RPE_RS23180 d991cca321ec54f94dbb91e52ca12058 645 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 407 422 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RPE_RS23180 d991cca321ec54f94dbb91e52ca12058 645 SUPERFAMILY SSF52540 320 556 1.55E-71 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS23180 d991cca321ec54f94dbb91e52ca12058 645 SMART SM00382 341 485 1.0E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS23180 d991cca321ec54f94dbb91e52ca12058 645 SUPERFAMILY SSF55785 21 124 4.35E-8 T 23-04-2016 IPR000014 PAS domain RPE_RS23180 d991cca321ec54f94dbb91e52ca12058 645 Gene3D G3DSA:1.10.10.60 546 635 3.5E-13 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS23180 d991cca321ec54f94dbb91e52ca12058 645 Gene3D G3DSA:3.40.50.300 319 493 4.3E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS23180 d991cca321ec54f94dbb91e52ca12058 645 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 533 542 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site RPE_RS23180 d991cca321ec54f94dbb91e52ca12058 645 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 345 358 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RPE_RS23180 d991cca321ec54f94dbb91e52ca12058 645 Gene3D G3DSA:1.10.8.60 495 545 7.7E-23 T 23-04-2016 RPE_RS23180 d991cca321ec54f94dbb91e52ca12058 645 SUPERFAMILY SSF55785 147 278 1.62E-25 T 23-04-2016 IPR000014 PAS domain RPE_RS23180 d991cca321ec54f94dbb91e52ca12058 645 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 164 287 1.9E-19 T 23-04-2016 IPR000014 PAS domain RPE_RS23180 d991cca321ec54f94dbb91e52ca12058 645 Pfam PF13188 PAS domain 20 56 1.4E-4 T 23-04-2016 IPR000014 PAS domain RPE_RS23180 d991cca321ec54f94dbb91e52ca12058 645 PANTHER PTHR32071 274 645 8.9E-160 T 23-04-2016 RPE_RS23180 d991cca321ec54f94dbb91e52ca12058 645 Pfam PF00158 Sigma-54 interaction domain 321 488 2.2E-72 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RPE_RS23180 d991cca321ec54f94dbb91e52ca12058 645 SMART SM00086 239 280 4.1E-6 T 23-04-2016 IPR001610 PAC motif RPE_RS23180 d991cca321ec54f94dbb91e52ca12058 645 Gene3D G3DSA:3.30.450.20 19 124 1.3E-10 T 23-04-2016 RPE_RS23180 d991cca321ec54f94dbb91e52ca12058 645 Gene3D G3DSA:3.30.450.20 159 278 6.5E-30 T 23-04-2016 RPE_RS23180 d991cca321ec54f94dbb91e52ca12058 645 SMART SM00091 160 227 4.5E-9 T 23-04-2016 IPR000014 PAS domain RPE_RS23180 d991cca321ec54f94dbb91e52ca12058 645 SMART SM00091 16 82 0.012 T 23-04-2016 IPR000014 PAS domain RPE_RS23180 d991cca321ec54f94dbb91e52ca12058 645 Pfam PF00989 PAS fold 162 277 1.6E-18 T 23-04-2016 IPR013767 PAS fold GO:0006355 RPE_RS23180 d991cca321ec54f94dbb91e52ca12058 645 PANTHER PTHR32071:SF16 274 645 8.9E-160 T 23-04-2016 RPE_RS04075 6a4f996e83a066fabc29e5688b9fdc8f 343 SUPERFAMILY SSF53335 96 269 7.8E-26 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS04075 6a4f996e83a066fabc29e5688b9fdc8f 343 Pfam PF13489 Methyltransferase domain 99 254 1.9E-13 T 23-04-2016 RPE_RS04075 6a4f996e83a066fabc29e5688b9fdc8f 343 Gene3D G3DSA:3.40.50.150 93 256 2.3E-24 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS02470 432733b7b0b581189966795fdd8f5f93 803 PANTHER PTHR10947:SF0 2 802 1.3E-253 T 23-04-2016 RPE_RS02470 432733b7b0b581189966795fdd8f5f93 803 PANTHER PTHR10947 2 802 1.3E-253 T 23-04-2016 RPE_RS02470 432733b7b0b581189966795fdd8f5f93 803 Gene3D G3DSA:3.30.56.20 401 473 1.4E-21 T 23-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 RPE_RS02470 432733b7b0b581189966795fdd8f5f93 803 SMART SM00874 401 469 9.4E-23 T 23-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 RPE_RS02470 432733b7b0b581189966795fdd8f5f93 803 SUPERFAMILY SSF46955 402 473 2.56E-15 T 23-04-2016 IPR009061 Putative DNA-binding domain RPE_RS02470 432733b7b0b581189966795fdd8f5f93 803 Pfam PF03147 Ferredoxin-fold anticodon binding domain 709 802 1.3E-24 T 23-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 RPE_RS02470 432733b7b0b581189966795fdd8f5f93 803 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 796 40.935 T 23-04-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RPE_RS02470 432733b7b0b581189966795fdd8f5f93 803 SMART SM00873 213 385 1.3E-84 T 23-04-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 RPE_RS02470 432733b7b0b581189966795fdd8f5f93 803 Gene3D G3DSA:3.50.40.10 202 393 3.9E-81 T 23-04-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 RPE_RS02470 432733b7b0b581189966795fdd8f5f93 803 Pfam PF01588 Putative tRNA binding domain 46 146 6.5E-24 T 23-04-2016 IPR002547 tRNA-binding domain GO:0000049 Reactome: REACT_71 RPE_RS02470 432733b7b0b581189966795fdd8f5f93 803 Gene3D G3DSA:2.40.50.140 40 154 1.5E-39 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS02470 432733b7b0b581189966795fdd8f5f93 803 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 802 3.0E-210 T 23-04-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RPE_RS02470 432733b7b0b581189966795fdd8f5f93 803 Gene3D G3DSA:3.30.70.380 711 802 2.5E-26 T 23-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 RPE_RS02470 432733b7b0b581189966795fdd8f5f93 803 SUPERFAMILY SSF56037 199 396 1.78E-73 T 23-04-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 RPE_RS02470 432733b7b0b581189966795fdd8f5f93 803 SUPERFAMILY SSF54991 706 802 4.84E-26 T 23-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 RPE_RS02470 432733b7b0b581189966795fdd8f5f93 803 SMART SM00896 709 802 1.1E-38 T 23-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 RPE_RS02470 432733b7b0b581189966795fdd8f5f93 803 Gene3D G3DSA:3.30.56.10 1 38 7.3E-24 T 23-04-2016 RPE_RS02470 432733b7b0b581189966795fdd8f5f93 803 Gene3D G3DSA:3.30.56.10 156 183 7.3E-24 T 23-04-2016 RPE_RS02470 432733b7b0b581189966795fdd8f5f93 803 Pfam PF03484 tRNA synthetase B5 domain 404 468 6.6E-16 T 23-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 RPE_RS02470 432733b7b0b581189966795fdd8f5f93 803 SUPERFAMILY SSF55681 465 693 2.44E-36 T 23-04-2016 RPE_RS02470 432733b7b0b581189966795fdd8f5f93 803 Gene3D G3DSA:3.30.930.10 488 694 6.0E-50 T 23-04-2016 RPE_RS02470 432733b7b0b581189966795fdd8f5f93 803 Pfam PF03483 B3/4 domain 214 385 3.6E-63 T 23-04-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 RPE_RS02470 432733b7b0b581189966795fdd8f5f93 803 SUPERFAMILY SSF50249 36 197 1.2E-44 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS00845 be994cf2af94d7749180302cada868a6 392 SUPERFAMILY SSF53901 4 268 2.6E-85 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS00845 be994cf2af94d7749180302cada868a6 392 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 85 103 - T 23-04-2016 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Reactome: REACT_22258 RPE_RS00845 be994cf2af94d7749180302cada868a6 392 SUPERFAMILY SSF53901 271 389 2.2E-45 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS00845 be994cf2af94d7749180302cada868a6 392 PANTHER PTHR18919:SF95 1 392 1.4E-230 T 23-04-2016 RPE_RS00845 be994cf2af94d7749180302cada868a6 392 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 7 389 7.1E-141 T 23-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RPE_RS00845 be994cf2af94d7749180302cada868a6 392 Gene3D G3DSA:3.40.47.10 142 193 1.5E-72 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS00845 be994cf2af94d7749180302cada868a6 392 Gene3D G3DSA:3.40.47.10 276 389 1.5E-72 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS00845 be994cf2af94d7749180302cada868a6 392 PIRSF PIRSF000429 1 392 5.6E-121 T 23-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RPE_RS00845 be994cf2af94d7749180302cada868a6 392 ProSitePatterns PS00737 Thiolases signature 2. 338 354 - T 23-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 RPE_RS00845 be994cf2af94d7749180302cada868a6 392 PANTHER PTHR18919 1 392 1.4E-230 T 23-04-2016 RPE_RS00845 be994cf2af94d7749180302cada868a6 392 ProSitePatterns PS00099 Thiolases active site. 373 386 - T 23-04-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 RPE_RS00845 be994cf2af94d7749180302cada868a6 392 Pfam PF00108 Thiolase, N-terminal domain 5 261 1.1E-104 T 23-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 RPE_RS00845 be994cf2af94d7749180302cada868a6 392 Pfam PF02803 Thiolase, C-terminal domain 270 390 5.1E-52 T 23-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 RPE_RS00845 be994cf2af94d7749180302cada868a6 392 Gene3D G3DSA:3.40.47.10 4 124 1.4E-75 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS00845 be994cf2af94d7749180302cada868a6 392 Gene3D G3DSA:3.40.47.10 194 275 1.4E-75 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS09030 c664f87e6727ade8ac399025b007bd07 305 PANTHER PTHR13078 1 305 2.9E-127 T 23-04-2016 RPE_RS09030 c664f87e6727ade8ac399025b007bd07 305 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 9 205 2.2E-7 T 23-04-2016 RPE_RS09030 c664f87e6727ade8ac399025b007bd07 305 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 153 181 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RPE_RS09030 c664f87e6727ade8ac399025b007bd07 305 SUPERFAMILY SSF51735 4 259 2.84E-61 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS09030 c664f87e6727ade8ac399025b007bd07 305 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 154 2.6E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS09030 c664f87e6727ade8ac399025b007bd07 305 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 185 2.6E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS09030 c664f87e6727ade8ac399025b007bd07 305 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 93 104 2.6E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS09030 c664f87e6727ade8ac399025b007bd07 305 PANTHER PTHR13078:SF55 1 305 2.9E-127 T 23-04-2016 RPE_RS09030 c664f87e6727ade8ac399025b007bd07 305 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 250 3.8E-38 T 23-04-2016 RPE_RS09030 c664f87e6727ade8ac399025b007bd07 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 156 4.8E-22 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS09030 c664f87e6727ade8ac399025b007bd07 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 4.8E-22 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS09030 c664f87e6727ade8ac399025b007bd07 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 93 104 4.8E-22 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS09030 c664f87e6727ade8ac399025b007bd07 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 4.8E-22 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS09030 c664f87e6727ade8ac399025b007bd07 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 185 4.8E-22 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS09030 c664f87e6727ade8ac399025b007bd07 305 Gene3D G3DSA:3.40.50.720 3 253 4.2E-63 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS18825 4b29efd3e07e7d53177726bff0858116 392 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 208 389 1.1E-26 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS18825 4b29efd3e07e7d53177726bff0858116 392 Gene3D G3DSA:1.10.3720.10 183 387 1.7E-16 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS18825 4b29efd3e07e7d53177726bff0858116 392 PANTHER PTHR30325 169 392 2.3E-199 T 23-04-2016 RPE_RS18825 4b29efd3e07e7d53177726bff0858116 392 PANTHER PTHR30325 27 145 2.3E-199 T 23-04-2016 RPE_RS18825 4b29efd3e07e7d53177726bff0858116 392 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 35 71 5.7E-6 T 23-04-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RPE_RS18825 4b29efd3e07e7d53177726bff0858116 392 SUPERFAMILY SSF161098 185 372 2.09E-18 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS15980 5e97d289de2ab5599908dfad0875e0b1 452 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 54 415 4.7E-42 T 23-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 RPE_RS15980 5e97d289de2ab5599908dfad0875e0b1 452 SUPERFAMILY SSF53807 6 422 1.31E-64 T 23-04-2016 RPE_RS15980 5e97d289de2ab5599908dfad0875e0b1 452 Gene3D G3DSA:3.40.50.1980 53 174 2.3E-22 T 23-04-2016 RPE_RS15980 5e97d289de2ab5599908dfad0875e0b1 452 PANTHER PTHR33712 8 447 5.8E-25 T 23-04-2016 RPE_RS15980 5e97d289de2ab5599908dfad0875e0b1 452 Gene3D G3DSA:3.40.50.1980 298 424 1.8E-8 T 23-04-2016 RPE_RS19470 3ec7ab9afc27efbfd6860bd86b94ff63 275 PIRSF PIRSF039097 1 271 1.3E-95 T 23-04-2016 IPR030669 Molybdenum storage protein subunit alpha/beta GO:0005737|GO:0030151 RPE_RS19470 3ec7ab9afc27efbfd6860bd86b94ff63 275 Pfam PF00696 Amino acid kinase family 40 238 2.1E-19 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RPE_RS19470 3ec7ab9afc27efbfd6860bd86b94ff63 275 SUPERFAMILY SSF53633 41 269 1.07E-25 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RPE_RS19470 3ec7ab9afc27efbfd6860bd86b94ff63 275 Gene3D G3DSA:3.40.1160.10 42 268 4.9E-21 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RPE_RS17930 0a5045476638598fbe6fb6bd23a17017 137 PANTHER PTHR12220 1 134 3.5E-71 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RPE_RS17930 0a5045476638598fbe6fb6bd23a17017 137 PRINTS PR00060 Ribosomal protein L16 signature 42 53 1.5E-39 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RPE_RS17930 0a5045476638598fbe6fb6bd23a17017 137 PRINTS PR00060 Ribosomal protein L16 signature 88 117 1.5E-39 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RPE_RS17930 0a5045476638598fbe6fb6bd23a17017 137 PRINTS PR00060 Ribosomal protein L16 signature 24 36 1.5E-39 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RPE_RS17930 0a5045476638598fbe6fb6bd23a17017 137 PRINTS PR00060 Ribosomal protein L16 signature 58 87 1.5E-39 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RPE_RS17930 0a5045476638598fbe6fb6bd23a17017 137 Gene3D G3DSA:3.90.1170.10 24 134 6.5E-54 T 23-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 RPE_RS17930 0a5045476638598fbe6fb6bd23a17017 137 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 23-04-2016 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17930 0a5045476638598fbe6fb6bd23a17017 137 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 23-04-2016 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17930 0a5045476638598fbe6fb6bd23a17017 137 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 39.169 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RPE_RS17930 0a5045476638598fbe6fb6bd23a17017 137 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 8.8E-51 T 23-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 RPE_RS17930 0a5045476638598fbe6fb6bd23a17017 137 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 127 1.4E-57 T 23-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RPE_RS17930 0a5045476638598fbe6fb6bd23a17017 137 SUPERFAMILY SSF54686 1 134 3.4E-56 T 23-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 RPE_RS08675 c1f555f214dc29a9c6ba31cd53026fec 229 SMART SM00100 23 139 2.7E-6 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RPE_RS08675 c1f555f214dc29a9c6ba31cd53026fec 229 Gene3D G3DSA:1.10.10.10 154 227 7.9E-17 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS08675 c1f555f214dc29a9c6ba31cd53026fec 229 PANTHER PTHR24567:SF28 38 227 3.5E-74 T 23-04-2016 RPE_RS08675 c1f555f214dc29a9c6ba31cd53026fec 229 SUPERFAMILY SSF51206 38 151 3.4E-21 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like RPE_RS08675 c1f555f214dc29a9c6ba31cd53026fec 229 Pfam PF13545 Crp-like helix-turn-helix domain 156 226 3.0E-16 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RPE_RS08675 c1f555f214dc29a9c6ba31cd53026fec 229 Gene3D G3DSA:2.60.120.10 39 146 6.0E-15 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS08675 c1f555f214dc29a9c6ba31cd53026fec 229 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 177 193 2.4E-11 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RPE_RS08675 c1f555f214dc29a9c6ba31cd53026fec 229 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 193 208 2.4E-11 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RPE_RS08675 c1f555f214dc29a9c6ba31cd53026fec 229 Pfam PF00027 Cyclic nucleotide-binding domain 41 119 2.5E-11 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RPE_RS08675 c1f555f214dc29a9c6ba31cd53026fec 229 PANTHER PTHR24567 38 227 3.5E-74 T 23-04-2016 RPE_RS08675 c1f555f214dc29a9c6ba31cd53026fec 229 SMART SM00419 171 220 1.1E-13 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RPE_RS08675 c1f555f214dc29a9c6ba31cd53026fec 229 SUPERFAMILY SSF46785 153 226 5.9E-13 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS24630 a14d65a65ed760e8f747bc00e4778fcd 812 PANTHER PTHR33121:SF13 494 791 5.5E-70 T 23-04-2016 RPE_RS24630 a14d65a65ed760e8f747bc00e4778fcd 812 PANTHER PTHR33121:SF13 13 18 5.5E-70 T 23-04-2016 RPE_RS24630 a14d65a65ed760e8f747bc00e4778fcd 812 SMART SM00267 354 532 1.6E-54 T 23-04-2016 IPR000160 GGDEF domain RPE_RS24630 a14d65a65ed760e8f747bc00e4778fcd 812 Gene3D G3DSA:3.30.70.270 367 539 3.3E-51 T 23-04-2016 RPE_RS24630 a14d65a65ed760e8f747bc00e4778fcd 812 SUPERFAMILY SSF55073 370 533 2.35E-44 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS24630 a14d65a65ed760e8f747bc00e4778fcd 812 PANTHER PTHR33121 494 791 5.5E-70 T 23-04-2016 RPE_RS24630 a14d65a65ed760e8f747bc00e4778fcd 812 PANTHER PTHR33121 13 18 5.5E-70 T 23-04-2016 RPE_RS24630 a14d65a65ed760e8f747bc00e4778fcd 812 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 363 530 3.6E-37 T 23-04-2016 IPR000160 GGDEF domain RPE_RS24630 a14d65a65ed760e8f747bc00e4778fcd 812 Pfam PF00990 Diguanylate cyclase, GGDEF domain 365 528 1.1E-42 T 23-04-2016 IPR000160 GGDEF domain RPE_RS24630 a14d65a65ed760e8f747bc00e4778fcd 812 SMART SM00052 542 788 3.4E-110 T 23-04-2016 IPR001633 EAL domain RPE_RS24630 a14d65a65ed760e8f747bc00e4778fcd 812 Gene3D G3DSA:3.20.20.450 546 791 5.1E-93 T 23-04-2016 IPR001633 EAL domain RPE_RS24630 a14d65a65ed760e8f747bc00e4778fcd 812 Pfam PF00563 EAL domain 548 783 1.8E-72 T 23-04-2016 IPR001633 EAL domain RPE_RS24630 a14d65a65ed760e8f747bc00e4778fcd 812 SUPERFAMILY SSF141868 548 793 1.28E-86 T 23-04-2016 IPR001633 EAL domain RPE_RS01490 a19599d67b70ead0ba4c638995e2a4bb 985 PANTHER PTHR23152 1 984 0.0 T 23-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RPE_RS01490 a19599d67b70ead0ba4c638995e2a4bb 985 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 13 51 1.0E-15 T 23-04-2016 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RPE_RS01490 a19599d67b70ead0ba4c638995e2a4bb 985 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 93 984 0.0 T 23-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RPE_RS01490 a19599d67b70ead0ba4c638995e2a4bb 985 SMART SM00861 632 825 1.1E-61 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RPE_RS01490 a19599d67b70ead0ba4c638995e2a4bb 985 Gene3D G3DSA:3.40.50.970 636 830 7.9E-23 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS01490 a19599d67b70ead0ba4c638995e2a4bb 985 SUPERFAMILY SSF52518 153 580 3.0E-91 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS01490 a19599d67b70ead0ba4c638995e2a4bb 985 Gene3D G3DSA:3.40.50.970 192 581 1.1E-74 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS01490 a19599d67b70ead0ba4c638995e2a4bb 985 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 830 984 1.7E-51 T 23-04-2016 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RPE_RS01490 a19599d67b70ead0ba4c638995e2a4bb 985 SUPERFAMILY SSF52518 615 832 1.07E-51 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS01490 a19599d67b70ead0ba4c638995e2a4bb 985 PIRSF PIRSF000157 1 985 0.0 T 23-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RPE_RS01490 a19599d67b70ead0ba4c638995e2a4bb 985 PANTHER PTHR23152:SF4 1 984 0.0 T 23-04-2016 RPE_RS01490 a19599d67b70ead0ba4c638995e2a4bb 985 Pfam PF02779 Transketolase, pyrimidine binding domain 631 826 7.8E-66 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RPE_RS01490 a19599d67b70ead0ba4c638995e2a4bb 985 Pfam PF00676 Dehydrogenase E1 component 244 554 8.8E-57 T 23-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 RPE_RS08055 2729bd68b8988af67a91997f17343e7f 567 SUPERFAMILY SSF51735 421 547 1.95E-28 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS08055 2729bd68b8988af67a91997f17343e7f 567 Pfam PF00999 Sodium/hydrogen exchanger family 12 387 3.5E-77 T 23-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RPE_RS08055 2729bd68b8988af67a91997f17343e7f 567 PANTHER PTHR16254 1 549 8.0E-265 T 23-04-2016 RPE_RS08055 2729bd68b8988af67a91997f17343e7f 567 Gene3D G3DSA:3.40.50.720 418 548 3.7E-35 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS08055 2729bd68b8988af67a91997f17343e7f 567 Pfam PF02254 TrkA-N domain 422 536 1.9E-25 T 23-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RPE_RS08055 2729bd68b8988af67a91997f17343e7f 567 PANTHER PTHR16254:SF17 1 549 8.0E-265 T 23-04-2016 RPE_RS14435 c967c9f25bab8a760d997173d32914e5 188 SUPERFAMILY SSF54593 20 150 2.89E-21 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RPE_RS14435 c967c9f25bab8a760d997173d32914e5 188 Gene3D G3DSA:3.10.180.10 19 149 1.4E-29 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RPE_RS14435 c967c9f25bab8a760d997173d32914e5 188 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 21 147 1.5E-12 T 23-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RPE_RS14435 c967c9f25bab8a760d997173d32914e5 188 PANTHER PTHR36113 20 155 5.1E-19 T 23-04-2016 RPE_RS17290 fecf47b2d753147abfee8437837af075 224 SMART SM00862 145 220 2.7E-16 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS17290 fecf47b2d753147abfee8437837af075 224 Gene3D G3DSA:3.40.50.2300 2 123 1.8E-32 T 23-04-2016 RPE_RS17290 fecf47b2d753147abfee8437837af075 224 SUPERFAMILY SSF46894 118 220 4.82E-22 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RPE_RS17290 fecf47b2d753147abfee8437837af075 224 SUPERFAMILY SSF52172 2 130 2.28E-33 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS17290 fecf47b2d753147abfee8437837af075 224 PANTHER PTHR26402 1 220 9.3E-74 T 23-04-2016 RPE_RS17290 fecf47b2d753147abfee8437837af075 224 Pfam PF00072 Response regulator receiver domain 3 112 4.5E-22 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS17290 fecf47b2d753147abfee8437837af075 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 219 1.2E-17 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS17290 fecf47b2d753147abfee8437837af075 224 PANTHER PTHR26402:SF578 1 220 9.3E-74 T 23-04-2016 RPE_RS17290 fecf47b2d753147abfee8437837af075 224 Gene3D G3DSA:1.10.10.10 124 221 4.1E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS17290 fecf47b2d753147abfee8437837af075 224 SMART SM00448 1 112 2.6E-29 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS22780 18006f0cae8d693486da9b33525cb804 245 PANTHER PTHR26402:SF528 8 242 1.8E-86 T 23-04-2016 RPE_RS22780 18006f0cae8d693486da9b33525cb804 245 SUPERFAMILY SSF52172 8 131 1.42E-38 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS22780 18006f0cae8d693486da9b33525cb804 245 Pfam PF00072 Response regulator receiver domain 10 119 1.7E-27 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS22780 18006f0cae8d693486da9b33525cb804 245 SMART SM00448 8 118 7.6E-42 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS22780 18006f0cae8d693486da9b33525cb804 245 Pfam PF00486 Transcriptional regulatory protein, C terminal 163 237 2.1E-21 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS22780 18006f0cae8d693486da9b33525cb804 245 SMART SM00862 161 237 4.7E-21 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS22780 18006f0cae8d693486da9b33525cb804 245 Gene3D G3DSA:3.40.50.2300 8 130 3.2E-38 T 23-04-2016 RPE_RS22780 18006f0cae8d693486da9b33525cb804 245 PANTHER PTHR26402 8 242 1.8E-86 T 23-04-2016 RPE_RS22780 18006f0cae8d693486da9b33525cb804 245 SUPERFAMILY SSF46894 141 238 1.87E-22 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RPE_RS22780 18006f0cae8d693486da9b33525cb804 245 Gene3D G3DSA:1.10.10.10 139 240 1.3E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS05000 a7a618a9f8bfda30daf6e1e06efffb32 675 Gene3D G3DSA:3.40.605.10 2 263 6.8E-41 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RPE_RS05000 a7a618a9f8bfda30daf6e1e06efffb32 675 Pfam PF00171 Aldehyde dehydrogenase family 11 500 6.4E-66 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RPE_RS05000 a7a618a9f8bfda30daf6e1e06efffb32 675 PANTHER PTHR11699 5 523 4.7E-123 T 23-04-2016 RPE_RS05000 a7a618a9f8bfda30daf6e1e06efffb32 675 Gene3D G3DSA:3.10.129.10 526 671 1.6E-41 T 23-04-2016 IPR029069 HotDog domain RPE_RS05000 a7a618a9f8bfda30daf6e1e06efffb32 675 SUPERFAMILY SSF53720 3 504 1.57E-84 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RPE_RS05000 a7a618a9f8bfda30daf6e1e06efffb32 675 PANTHER PTHR11699:SF12 5 523 4.7E-123 T 23-04-2016 IPR011966 Phenylacetic acid degradation protein PaaN RPE_RS05000 a7a618a9f8bfda30daf6e1e06efffb32 675 TIGRFAM TIGR02278 PaaN-DH: phenylacetic acid degradation protein paaN 3 671 3.5E-297 T 23-04-2016 IPR011966 Phenylacetic acid degradation protein PaaN RPE_RS05000 a7a618a9f8bfda30daf6e1e06efffb32 675 SUPERFAMILY SSF54637 528 674 8.65E-37 T 23-04-2016 IPR029069 HotDog domain RPE_RS05000 a7a618a9f8bfda30daf6e1e06efffb32 675 Pfam PF01575 MaoC like domain 539 651 2.4E-22 T 23-04-2016 IPR002539 MaoC-like domain RPE_RS05000 a7a618a9f8bfda30daf6e1e06efffb32 675 Gene3D G3DSA:3.40.309.10 264 455 1.5E-39 T 23-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RPE_RS04515 d2633aac7df2ca4146e4f7e732a58069 309 Hamap MF_00188 Protease HtpX [htpX]. 3 278 27.983 T 23-04-2016 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 RPE_RS04515 d2633aac7df2ca4146e4f7e732a58069 309 PANTHER PTHR10120:SF19 1 297 9.5E-112 T 23-04-2016 RPE_RS04515 d2633aac7df2ca4146e4f7e732a58069 309 PANTHER PTHR10120 1 297 9.5E-112 T 23-04-2016 RPE_RS04515 d2633aac7df2ca4146e4f7e732a58069 309 Pfam PF01435 Peptidase family M48 65 278 3.3E-42 T 23-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RPE_RS04515 d2633aac7df2ca4146e4f7e732a58069 309 Gene3D G3DSA:3.30.2010.10 56 146 1.2E-34 T 23-04-2016 RPE_RS16965 34124349c9f1499cda3a601c375d2116 121 Pfam PF00072 Response regulator receiver domain 5 116 1.0E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS16965 34124349c9f1499cda3a601c375d2116 121 SUPERFAMILY SSF52172 3 120 8.4E-36 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS16965 34124349c9f1499cda3a601c375d2116 121 Gene3D G3DSA:3.40.50.2300 3 120 5.6E-37 T 23-04-2016 RPE_RS16965 34124349c9f1499cda3a601c375d2116 121 SMART SM00448 3 116 6.4E-33 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS16965 34124349c9f1499cda3a601c375d2116 121 PANTHER PTHR24423 3 120 2.1E-37 T 23-04-2016 RPE_RS24055 abb1f09aa65fe28ffe8c9d546552ba76 141 Pfam PF01230 HIT domain 15 104 9.1E-16 T 23-04-2016 IPR001310 Histidine triad (HIT) protein RPE_RS24055 abb1f09aa65fe28ffe8c9d546552ba76 141 PIRSF PIRSF000714 7 140 1.6E-49 T 23-04-2016 IPR026026 Histidine triad hydrolase, Hint-type RPE_RS24055 abb1f09aa65fe28ffe8c9d546552ba76 141 Gene3D G3DSA:3.30.428.10 15 137 1.9E-34 T 23-04-2016 IPR011146 HIT-like domain GO:0003824 RPE_RS24055 abb1f09aa65fe28ffe8c9d546552ba76 141 PANTHER PTHR23089 21 137 3.9E-34 T 23-04-2016 IPR001310 Histidine triad (HIT) protein RPE_RS24055 abb1f09aa65fe28ffe8c9d546552ba76 141 PANTHER PTHR23089:SF13 21 137 3.9E-34 T 23-04-2016 RPE_RS24055 abb1f09aa65fe28ffe8c9d546552ba76 141 SUPERFAMILY SSF54197 17 138 1.33E-34 T 23-04-2016 IPR011146 HIT-like domain GO:0003824 RPE_RS08495 d23d96c724950d3a98357ef9a7b25d5d 408 Gene3D G3DSA:3.40.50.1820 180 251 1.6E-40 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS08495 d23d96c724950d3a98357ef9a7b25d5d 408 Gene3D G3DSA:3.40.50.1820 2 136 1.6E-40 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS08495 d23d96c724950d3a98357ef9a7b25d5d 408 Pfam PF12146 Serine aminopeptidase, S33 47 137 1.7E-15 T 23-04-2016 IPR022742 Serine aminopeptidase, S33 RPE_RS08495 d23d96c724950d3a98357ef9a7b25d5d 408 PANTHER PTHR11614 1 272 1.9E-115 T 23-04-2016 RPE_RS08495 d23d96c724950d3a98357ef9a7b25d5d 408 Pfam PF02566 OsmC-like protein 300 402 3.9E-15 T 23-04-2016 IPR003718 OsmC/Ohr family RPE_RS08495 d23d96c724950d3a98357ef9a7b25d5d 408 SUPERFAMILY SSF53474 182 252 3.75E-46 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS08495 d23d96c724950d3a98357ef9a7b25d5d 408 SUPERFAMILY SSF53474 2 138 3.75E-46 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS08495 d23d96c724950d3a98357ef9a7b25d5d 408 Gene3D G3DSA:3.30.300.20 265 404 1.8E-42 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta RPE_RS08495 d23d96c724950d3a98357ef9a7b25d5d 408 SUPERFAMILY SSF82784 228 403 5.37E-42 T 23-04-2016 IPR003718 OsmC/Ohr family RPE_RS08495 d23d96c724950d3a98357ef9a7b25d5d 408 PANTHER PTHR11614:SF108 1 272 1.9E-115 T 23-04-2016 RPE_RS10615 d4d225fd4ade449f11bd2f29843c7b67 442 Pfam PF14450 Cell division protein FtsA 232 381 4.0E-16 T 23-04-2016 RPE_RS10615 d4d225fd4ade449f11bd2f29843c7b67 442 PANTHER PTHR32432 13 425 1.4E-115 T 23-04-2016 RPE_RS10615 d4d225fd4ade449f11bd2f29843c7b67 442 SUPERFAMILY SSF53067 223 406 6.48E-35 T 23-04-2016 RPE_RS10615 d4d225fd4ade449f11bd2f29843c7b67 442 PANTHER PTHR32432:SF4 13 425 1.4E-115 T 23-04-2016 RPE_RS10615 d4d225fd4ade449f11bd2f29843c7b67 442 Pfam PF02491 SHS2 domain inserted in FTSA 110 187 1.2E-16 T 23-04-2016 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 RPE_RS10615 d4d225fd4ade449f11bd2f29843c7b67 442 Gene3D G3DSA:3.30.420.40 12 114 6.3E-14 T 23-04-2016 RPE_RS10615 d4d225fd4ade449f11bd2f29843c7b67 442 Gene3D G3DSA:3.30.420.40 194 233 6.3E-14 T 23-04-2016 RPE_RS10615 d4d225fd4ade449f11bd2f29843c7b67 442 SUPERFAMILY SSF53067 23 222 1.24E-40 T 23-04-2016 RPE_RS10615 d4d225fd4ade449f11bd2f29843c7b67 442 Gene3D G3DSA:3.30.420.40 234 259 1.0E-19 T 23-04-2016 RPE_RS10615 d4d225fd4ade449f11bd2f29843c7b67 442 Gene3D G3DSA:3.30.420.40 326 380 1.0E-19 T 23-04-2016 RPE_RS10615 d4d225fd4ade449f11bd2f29843c7b67 442 Gene3D G3DSA:3.90.640.10 260 325 9.2E-14 T 23-04-2016 RPE_RS10615 d4d225fd4ade449f11bd2f29843c7b67 442 PIRSF PIRSF003101 16 442 7.4E-107 T 23-04-2016 IPR020823 Cell division protein FtsA GO:0007049 RPE_RS10615 d4d225fd4ade449f11bd2f29843c7b67 442 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 25 406 4.9E-89 T 23-04-2016 IPR020823 Cell division protein FtsA GO:0007049 RPE_RS10615 d4d225fd4ade449f11bd2f29843c7b67 442 Hamap MF_02033 Cell division protein FtsA [ftsA]. 21 442 24.731 T 23-04-2016 IPR020823 Cell division protein FtsA GO:0007049 RPE_RS10615 d4d225fd4ade449f11bd2f29843c7b67 442 SMART SM00842 25 221 1.8E-66 T 23-04-2016 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 RPE_RS10615 d4d225fd4ade449f11bd2f29843c7b67 442 Gene3D G3DSA:3.30.1490.110 115 193 8.7E-18 T 23-04-2016 RPE_RS16290 2c90b99e02e55320657a589a3fd039e0 323 Pfam PF14390 Putative PD-(D/E)XK family member, (DUF4420) 6 306 3.3E-64 T 23-04-2016 IPR025534 Putative PD-(D/E)XK family member (DUF4420) RPE_RS22460 6d5d2d274b6ad04bc46f2005ca72f8bc 247 PANTHER PTHR26402 178 238 4.0E-15 T 23-04-2016 RPE_RS22460 6d5d2d274b6ad04bc46f2005ca72f8bc 247 PANTHER PTHR26402:SF151 178 238 4.0E-15 T 23-04-2016 RPE_RS22460 6d5d2d274b6ad04bc46f2005ca72f8bc 247 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 194 1.2E-8 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS22460 6d5d2d274b6ad04bc46f2005ca72f8bc 247 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 210 222 1.2E-8 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS22460 6d5d2d274b6ad04bc46f2005ca72f8bc 247 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 194 210 1.2E-8 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS22460 6d5d2d274b6ad04bc46f2005ca72f8bc 247 Pfam PF00196 Bacterial regulatory proteins, luxR family 180 234 4.0E-16 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS22460 6d5d2d274b6ad04bc46f2005ca72f8bc 247 SMART SM00421 177 234 1.5E-16 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS22460 6d5d2d274b6ad04bc46f2005ca72f8bc 247 SUPERFAMILY SSF46894 174 237 1.56E-17 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RPE_RS22460 6d5d2d274b6ad04bc46f2005ca72f8bc 247 Gene3D G3DSA:1.10.10.10 174 237 3.0E-19 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS24175 12d96bf0ef518e9c7eee5f3ac23974af 119 Gene3D G3DSA:1.20.1290.10 6 97 1.4E-21 T 23-04-2016 IPR029032 AhpD-like RPE_RS24175 12d96bf0ef518e9c7eee5f3ac23974af 119 SUPERFAMILY SSF69118 4 99 5.76E-26 T 23-04-2016 IPR029032 AhpD-like RPE_RS24175 12d96bf0ef518e9c7eee5f3ac23974af 119 Pfam PF02627 Carboxymuconolactone decarboxylase family 36 97 3.1E-15 T 23-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RPE_RS24175 12d96bf0ef518e9c7eee5f3ac23974af 119 PANTHER PTHR33570 2 97 6.4E-36 T 23-04-2016 RPE_RS24175 12d96bf0ef518e9c7eee5f3ac23974af 119 PANTHER PTHR33570:SF2 2 97 6.4E-36 T 23-04-2016 RPE_RS02665 36c92db637f2429f7ad1cc3fe8ed2316 223 SUPERFAMILY SSF53335 23 216 4.43E-24 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS02665 36c92db637f2429f7ad1cc3fe8ed2316 223 PANTHER PTHR20974:SF0 16 223 3.6E-89 T 23-04-2016 RPE_RS02665 36c92db637f2429f7ad1cc3fe8ed2316 223 PANTHER PTHR20974 16 223 3.6E-89 T 23-04-2016 IPR010342 Protein of unknown function DUF938 RPE_RS02665 36c92db637f2429f7ad1cc3fe8ed2316 223 Gene3D G3DSA:3.40.50.150 27 210 1.3E-9 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS02665 36c92db637f2429f7ad1cc3fe8ed2316 223 Pfam PF06080 Protein of unknown function (DUF938) 22 222 4.9E-70 T 23-04-2016 IPR010342 Protein of unknown function DUF938 RPE_RS18610 725ac7df51a1bf03b4fe05e3afe4f8fc 715 Gene3D G3DSA:2.60.40.1180 617 713 4.8E-29 T 23-04-2016 IPR013780 Glycosyl hydrolase, all-beta RPE_RS18610 725ac7df51a1bf03b4fe05e3afe4f8fc 715 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 104 711 1.2E-278 T 23-04-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 RPE_RS18610 725ac7df51a1bf03b4fe05e3afe4f8fc 715 SMART SM00642 242 628 6.8E-8 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RPE_RS18610 725ac7df51a1bf03b4fe05e3afe4f8fc 715 SUPERFAMILY SSF51011 617 714 1.73E-27 T 23-04-2016 RPE_RS18610 725ac7df51a1bf03b4fe05e3afe4f8fc 715 SUPERFAMILY SSF81296 13 108 3.5E-16 T 23-04-2016 IPR014756 Immunoglobulin E-set RPE_RS18610 725ac7df51a1bf03b4fe05e3afe4f8fc 715 PIRSF PIRSF000463 6 715 2.4E-286 T 23-04-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 RPE_RS18610 725ac7df51a1bf03b4fe05e3afe4f8fc 715 SUPERFAMILY SSF51445 232 612 2.69E-114 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RPE_RS18610 725ac7df51a1bf03b4fe05e3afe4f8fc 715 PANTHER PTHR10357:SF160 47 713 0.0 T 23-04-2016 RPE_RS18610 725ac7df51a1bf03b4fe05e3afe4f8fc 715 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 119 202 7.6E-16 T 23-04-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 RPE_RS18610 725ac7df51a1bf03b4fe05e3afe4f8fc 715 Pfam PF00128 Alpha amylase, catalytic domain 264 338 3.0E-8 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RPE_RS18610 725ac7df51a1bf03b4fe05e3afe4f8fc 715 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 96 714 43.766 T 23-04-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 RPE_RS18610 725ac7df51a1bf03b4fe05e3afe4f8fc 715 SUPERFAMILY SSF81296 113 219 4.2E-30 T 23-04-2016 IPR014756 Immunoglobulin E-set RPE_RS18610 725ac7df51a1bf03b4fe05e3afe4f8fc 715 Gene3D G3DSA:2.60.40.10 12 99 8.7E-15 T 23-04-2016 IPR013783 Immunoglobulin-like fold RPE_RS18610 725ac7df51a1bf03b4fe05e3afe4f8fc 715 Gene3D G3DSA:2.60.40.10 108 216 9.4E-35 T 23-04-2016 IPR013783 Immunoglobulin-like fold RPE_RS18610 725ac7df51a1bf03b4fe05e3afe4f8fc 715 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 620 713 2.1E-22 T 23-04-2016 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: REACT_474 RPE_RS18610 725ac7df51a1bf03b4fe05e3afe4f8fc 715 Gene3D G3DSA:3.20.20.80 237 603 4.9E-95 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RPE_RS18610 725ac7df51a1bf03b4fe05e3afe4f8fc 715 PANTHER PTHR10357 47 713 0.0 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RPE_RS22415 b2b362e7556c3d84545856f027762a2d 220 SUPERFAMILY SSF51735 1 208 1.49E-28 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS22415 b2b362e7556c3d84545856f027762a2d 220 Gene3D G3DSA:3.40.50.720 1 205 3.5E-25 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS22415 b2b362e7556c3d84545856f027762a2d 220 PANTHER PTHR14097:SF8 1 203 4.0E-52 T 23-04-2016 RPE_RS22415 b2b362e7556c3d84545856f027762a2d 220 PANTHER PTHR14097 1 203 4.0E-52 T 23-04-2016 RPE_RS20600 fbe491149da2df72819eef3e2c2490ad 157 PANTHER PTHR30411:SF6 1 152 2.6E-64 T 23-04-2016 RPE_RS20600 fbe491149da2df72819eef3e2c2490ad 157 PANTHER PTHR30411 1 152 2.6E-64 T 23-04-2016 RPE_RS20600 fbe491149da2df72819eef3e2c2490ad 157 SUPERFAMILY SSF55826 5 152 2.09E-37 T 23-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 RPE_RS20600 fbe491149da2df72819eef3e2c2490ad 157 Gene3D G3DSA:3.90.960.10 2 153 3.6E-45 T 23-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 RPE_RS20600 fbe491149da2df72819eef3e2c2490ad 157 Pfam PF04073 Aminoacyl-tRNA editing domain 26 139 6.4E-25 T 23-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 RPE_RS18050 8a9549e783caa43a16ab41e6bad3bbf8 154 Pfam PF01799 [2Fe-2S] binding domain 74 145 1.5E-25 T 23-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RPE_RS18050 8a9549e783caa43a16ab41e6bad3bbf8 154 SUPERFAMILY SSF47741 74 152 1.7E-29 T 23-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RPE_RS18050 8a9549e783caa43a16ab41e6bad3bbf8 154 Gene3D G3DSA:3.10.20.30 3 75 4.7E-27 T 23-04-2016 IPR012675 Beta-grasp domain RPE_RS18050 8a9549e783caa43a16ab41e6bad3bbf8 154 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 40 48 - T 23-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RPE_RS18050 8a9549e783caa43a16ab41e6bad3bbf8 154 Gene3D G3DSA:1.10.150.120 76 152 2.8E-29 T 23-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RPE_RS18050 8a9549e783caa43a16ab41e6bad3bbf8 154 SUPERFAMILY SSF54292 3 79 4.33E-25 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RPE_RS18050 8a9549e783caa43a16ab41e6bad3bbf8 154 PANTHER PTHR11908:SF66 1 135 5.3E-30 T 23-04-2016 RPE_RS18050 8a9549e783caa43a16ab41e6bad3bbf8 154 PANTHER PTHR11908 1 135 5.3E-30 T 23-04-2016 RPE_RS18050 8a9549e783caa43a16ab41e6bad3bbf8 154 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 7 53 1.0E-7 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RPE_RS03745 a379132f37b77b06333196026efa4fb1 309 Pfam PF09130 Domain of unknown function (DUF1932) 198 268 3.0E-16 T 23-04-2016 IPR015814 Phosphogluconate dehydrogenase, NAD-binding, putative, C-terminal RPE_RS03745 a379132f37b77b06333196026efa4fb1 309 SUPERFAMILY SSF48179 171 280 7.74E-31 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RPE_RS03745 a379132f37b77b06333196026efa4fb1 309 Gene3D G3DSA:1.10.1040.10 178 279 1.9E-38 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RPE_RS03745 a379132f37b77b06333196026efa4fb1 309 PANTHER PTHR22981 3 211 3.3E-63 T 23-04-2016 RPE_RS03745 a379132f37b77b06333196026efa4fb1 309 Gene3D G3DSA:3.40.50.720 10 177 7.7E-34 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS03745 a379132f37b77b06333196026efa4fb1 309 PANTHER PTHR22981:SF63 3 211 3.3E-63 T 23-04-2016 RPE_RS03745 a379132f37b77b06333196026efa4fb1 309 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 10 109 9.0E-8 T 23-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 RPE_RS03745 a379132f37b77b06333196026efa4fb1 309 SUPERFAMILY SSF51735 9 169 2.23E-41 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS02370 57aa6d3fde80aa460d318f4df4622fca 504 Gene3D G3DSA:2.30.38.10 319 395 2.0E-27 T 23-04-2016 RPE_RS02370 57aa6d3fde80aa460d318f4df4622fca 504 PANTHER PTHR24096 1 496 6.5E-242 T 23-04-2016 RPE_RS02370 57aa6d3fde80aa460d318f4df4622fca 504 Gene3D G3DSA:3.40.50.980 16 165 7.1E-36 T 23-04-2016 RPE_RS02370 57aa6d3fde80aa460d318f4df4622fca 504 Gene3D G3DSA:3.30.300.30 399 498 8.9E-28 T 23-04-2016 RPE_RS02370 57aa6d3fde80aa460d318f4df4622fca 504 PANTHER PTHR24096:SF206 1 496 6.5E-242 T 23-04-2016 RPE_RS02370 57aa6d3fde80aa460d318f4df4622fca 504 Pfam PF00501 AMP-binding enzyme 17 404 3.8E-99 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS02370 57aa6d3fde80aa460d318f4df4622fca 504 Gene3D G3DSA:3.40.50.980 166 312 1.4E-39 T 23-04-2016 RPE_RS02370 57aa6d3fde80aa460d318f4df4622fca 504 Pfam PF13193 AMP-binding enzyme C-terminal domain 413 488 4.6E-14 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RPE_RS02370 57aa6d3fde80aa460d318f4df4622fca 504 ProSitePatterns PS00455 Putative AMP-binding domain signature. 160 171 - T 23-04-2016 IPR020845 AMP-binding, conserved site RPE_RS02370 57aa6d3fde80aa460d318f4df4622fca 504 SUPERFAMILY SSF56801 16 500 2.49E-146 T 23-04-2016 RPE_RS10310 fd9d5bbaa3143964702e7262e00b9b26 159 SUPERFAMILY SSF47240 1 150 6.24E-51 T 23-04-2016 IPR009078 Ferritin-like superfamily RPE_RS10310 fd9d5bbaa3143964702e7262e00b9b26 159 Pfam PF00210 Ferritin-like domain 8 141 6.0E-35 T 23-04-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 RPE_RS10310 fd9d5bbaa3143964702e7262e00b9b26 159 PIRSF PIRSF002560 1 157 2.5E-63 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RPE_RS10310 fd9d5bbaa3143964702e7262e00b9b26 159 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RPE_RS10310 fd9d5bbaa3143964702e7262e00b9b26 159 PANTHER PTHR30295:SF0 1 154 1.4E-42 T 23-04-2016 RPE_RS10310 fd9d5bbaa3143964702e7262e00b9b26 159 PANTHER PTHR30295 1 154 1.4E-42 T 23-04-2016 RPE_RS10310 fd9d5bbaa3143964702e7262e00b9b26 159 TIGRFAM TIGR00754 bfr: bacterioferritin 1 155 1.2E-57 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RPE_RS10310 fd9d5bbaa3143964702e7262e00b9b26 159 PRINTS PR00601 Bacterioferritin signature 86 106 1.3E-57 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RPE_RS10310 fd9d5bbaa3143964702e7262e00b9b26 159 PRINTS PR00601 Bacterioferritin signature 65 85 1.3E-57 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RPE_RS10310 fd9d5bbaa3143964702e7262e00b9b26 159 PRINTS PR00601 Bacterioferritin signature 3 22 1.3E-57 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RPE_RS10310 fd9d5bbaa3143964702e7262e00b9b26 159 PRINTS PR00601 Bacterioferritin signature 107 127 1.3E-57 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RPE_RS10310 fd9d5bbaa3143964702e7262e00b9b26 159 PRINTS PR00601 Bacterioferritin signature 23 43 1.3E-57 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RPE_RS10310 fd9d5bbaa3143964702e7262e00b9b26 159 PRINTS PR00601 Bacterioferritin signature 128 149 1.3E-57 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RPE_RS10310 fd9d5bbaa3143964702e7262e00b9b26 159 PRINTS PR00601 Bacterioferritin signature 44 64 1.3E-57 T 23-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RPE_RS10310 fd9d5bbaa3143964702e7262e00b9b26 159 Gene3D G3DSA:1.20.1260.10 1 155 2.9E-58 T 23-04-2016 IPR012347 Ferritin-related RPE_RS17065 5ffb6254b5d3f5100fc0bc5775bba794 109 SUPERFAMILY SSF54736 24 108 8.89E-33 T 23-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RPE_RS17065 5ffb6254b5d3f5100fc0bc5775bba794 109 Gene3D G3DSA:3.30.1390.10 12 108 8.4E-46 T 23-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RPE_RS17065 5ffb6254b5d3f5100fc0bc5775bba794 109 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 26 104 4.6E-33 T 23-04-2016 IPR003769 Adaptor protein ClpS, core GO:0030163 RPE_RS17065 5ffb6254b5d3f5100fc0bc5775bba794 109 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 14 104 28.351 T 23-04-2016 IPR022935 ATP-dependent Clp protease adaptor protein ClpS RPE_RS17065 5ffb6254b5d3f5100fc0bc5775bba794 109 PANTHER PTHR33473 10 108 9.5E-41 T 23-04-2016 RPE_RS09130 d8fb08a888b8dbb5d595d49b029f470d 417 SUPERFAMILY SSF51905 372 413 6.47E-41 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS09130 d8fb08a888b8dbb5d595d49b029f470d 417 SUPERFAMILY SSF51905 1 276 6.47E-41 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS09130 d8fb08a888b8dbb5d595d49b029f470d 417 Gene3D G3DSA:3.40.50.720 365 412 6.9E-26 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS09130 d8fb08a888b8dbb5d595d49b029f470d 417 Gene3D G3DSA:3.40.50.720 187 274 6.9E-26 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS09130 d8fb08a888b8dbb5d595d49b029f470d 417 Gene3D G3DSA:3.40.50.720 2 80 6.9E-26 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS09130 d8fb08a888b8dbb5d595d49b029f470d 417 TIGRFAM TIGR03467 HpnE: squalene-associated FAD-dependent desaturase 5 412 1.3E-120 T 23-04-2016 IPR017830 Squalene-associated FAD-dependent desaturase RPE_RS09130 d8fb08a888b8dbb5d595d49b029f470d 417 Pfam PF01593 Flavin containing amine oxidoreductase 12 412 4.5E-44 T 23-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 RPE_RS09130 d8fb08a888b8dbb5d595d49b029f470d 417 PANTHER PTHR10742 7 414 1.4E-20 T 23-04-2016 RPE_RS17195 4d1904f7e276b0352586849d94af63c7 181 Pfam PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase 12 173 4.6E-45 T 23-04-2016 IPR005551 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase GO:0051191 RPE_RS17195 4d1904f7e276b0352586849d94af63c7 181 TIGRFAM TIGR03124 citrate_citX: holo-ACP synthase CitX 12 173 4.4E-48 T 23-04-2016 IPR005551 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase GO:0051191 RPE_RS07770 1e41cde8194114ec96783609c7563f08 567 Pfam PF00672 HAMP domain 198 260 8.4E-15 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS07770 1e41cde8194114ec96783609c7563f08 567 Gene3D G3DSA:3.30.450.20 30 187 1.7E-52 T 23-04-2016 RPE_RS07770 1e41cde8194114ec96783609c7563f08 567 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 383 560 1.0E-37 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS07770 1e41cde8194114ec96783609c7563f08 567 SUPERFAMILY SSF58104 280 560 1.03E-63 T 23-04-2016 RPE_RS07770 1e41cde8194114ec96783609c7563f08 567 SUPERFAMILY SSF158472 218 264 4.97E-11 T 23-04-2016 RPE_RS07770 1e41cde8194114ec96783609c7563f08 567 Pfam PF17200 Single Cache domain 2 44 192 2.3E-46 T 23-04-2016 IPR033480 Single Cache domain 2 RPE_RS07770 1e41cde8194114ec96783609c7563f08 567 Gene3D G3DSA:1.10.287.950 331 531 8.1E-50 T 23-04-2016 RPE_RS07770 1e41cde8194114ec96783609c7563f08 567 SMART SM01049 40 134 6.9E-40 T 23-04-2016 IPR033480 Single Cache domain 2 RPE_RS07770 1e41cde8194114ec96783609c7563f08 567 PANTHER PTHR32089:SF40 285 564 7.5E-202 T 23-04-2016 RPE_RS07770 1e41cde8194114ec96783609c7563f08 567 PANTHER PTHR32089:SF40 81 252 7.5E-202 T 23-04-2016 RPE_RS07770 1e41cde8194114ec96783609c7563f08 567 SMART SM00283 307 561 2.2E-51 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS07770 1e41cde8194114ec96783609c7563f08 567 PANTHER PTHR32089 285 564 7.5E-202 T 23-04-2016 RPE_RS07770 1e41cde8194114ec96783609c7563f08 567 PANTHER PTHR32089 81 252 7.5E-202 T 23-04-2016 RPE_RS07770 1e41cde8194114ec96783609c7563f08 567 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 482 511 3.2E-8 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS07770 1e41cde8194114ec96783609c7563f08 567 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 335 364 3.2E-8 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS07770 1e41cde8194114ec96783609c7563f08 567 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 434 463 3.2E-8 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS07770 1e41cde8194114ec96783609c7563f08 567 SMART SM00304 217 270 6.4E-10 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS03485 6beede999534daffdee4d2bbc096081f 550 Pfam PF04311 Protein of unknown function (DUF459) 96 192 5.1E-10 T 23-04-2016 IPR007407 Protein of unknown function DUF459 RPE_RS03485 6beede999534daffdee4d2bbc096081f 550 Pfam PF04311 Protein of unknown function (DUF459) 248 385 1.8E-32 T 23-04-2016 IPR007407 Protein of unknown function DUF459 RPE_RS03485 6beede999534daffdee4d2bbc096081f 550 SUPERFAMILY SSF52266 258 369 1.83E-15 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain RPE_RS03485 6beede999534daffdee4d2bbc096081f 550 SUPERFAMILY SSF52266 101 184 1.83E-15 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain RPE_RS03485 6beede999534daffdee4d2bbc096081f 550 Gene3D G3DSA:3.40.50.1110 76 187 2.4E-13 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain RPE_RS03485 6beede999534daffdee4d2bbc096081f 550 Gene3D G3DSA:3.40.50.1110 261 363 2.4E-13 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain RPE_RS20645 1850647defed90177975fc1531167e36 235 Pfam PF06242 Protein of unknown function (DUF1013) 35 173 1.4E-64 T 23-04-2016 IPR010421 Protein of unknown function DUF1013 RPE_RS02945 16300143862c75e912ce4c1937b6f531 778 Gene3D G3DSA:3.30.365.10 442 596 1.7E-38 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS02945 16300143862c75e912ce4c1937b6f531 778 TIGRFAM TIGR03194 4hydrxCoA_A: 4-hydroxybenzoyl-CoA reductase, alpha subunit 17 761 0.0 T 23-04-2016 IPR017607 4-hydroxybenzoyl-CoA reductase, alpha subunit KEGG: 00362+1.3.7.9|KEGG: 00627+1.3.7.9|MetaCyc: PWY-6080|MetaCyc: PWY-7046 RPE_RS02945 16300143862c75e912ce4c1937b6f531 778 PANTHER PTHR11908 19 561 9.3E-188 T 23-04-2016 RPE_RS02945 16300143862c75e912ce4c1937b6f531 778 PANTHER PTHR11908 579 768 9.3E-188 T 23-04-2016 RPE_RS02945 16300143862c75e912ce4c1937b6f531 778 SUPERFAMILY SSF54665 18 154 7.2E-36 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RPE_RS02945 16300143862c75e912ce4c1937b6f531 778 Gene3D G3DSA:3.90.1170.50 12 132 8.9E-33 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RPE_RS02945 16300143862c75e912ce4c1937b6f531 778 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 148 702 3.4E-149 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS02945 16300143862c75e912ce4c1937b6f531 778 PANTHER PTHR11908:SF95 19 561 9.3E-188 T 23-04-2016 RPE_RS02945 16300143862c75e912ce4c1937b6f531 778 PANTHER PTHR11908:SF95 579 768 9.3E-188 T 23-04-2016 RPE_RS02945 16300143862c75e912ce4c1937b6f531 778 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 26 132 1.1E-28 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RPE_RS02945 16300143862c75e912ce4c1937b6f531 778 Gene3D G3DSA:3.30.365.10 362 441 3.6E-59 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS02945 16300143862c75e912ce4c1937b6f531 778 Gene3D G3DSA:3.30.365.10 620 765 3.6E-59 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS02945 16300143862c75e912ce4c1937b6f531 778 Gene3D G3DSA:3.30.365.10 177 283 2.6E-30 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS02945 16300143862c75e912ce4c1937b6f531 778 SMART SM01008 26 132 7.2E-41 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RPE_RS02945 16300143862c75e912ce4c1937b6f531 778 Gene3D G3DSA:3.30.365.10 135 176 2.6E-31 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS02945 16300143862c75e912ce4c1937b6f531 778 Gene3D G3DSA:3.30.365.10 285 360 2.6E-31 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS02945 16300143862c75e912ce4c1937b6f531 778 SUPERFAMILY SSF56003 136 761 1.83E-172 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS00005 95e25565c888b446682a87dc883c6ad5 474 Pfam PF11638 DnaA N-terminal domain 7 68 1.4E-19 T 23-04-2016 IPR024633 DnaA N-terminal domain RPE_RS00005 95e25565c888b446682a87dc883c6ad5 474 SUPERFAMILY SSF48295 369 473 1.15E-36 T 23-04-2016 IPR010921 Trp repressor/replication initiator GO:0043565 RPE_RS00005 95e25565c888b446682a87dc883c6ad5 474 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 9 472 4.3E-149 T 23-04-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 RPE_RS00005 95e25565c888b446682a87dc883c6ad5 474 SUPERFAMILY SSF52540 131 349 3.1E-28 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS00005 95e25565c888b446682a87dc883c6ad5 474 Gene3D G3DSA:3.40.50.300 127 295 1.7E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS00005 95e25565c888b446682a87dc883c6ad5 474 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 6 473 28.522 T 23-04-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 RPE_RS00005 95e25565c888b446682a87dc883c6ad5 474 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 231 245 6.4E-45 T 23-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RPE_RS00005 95e25565c888b446682a87dc883c6ad5 474 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 199 213 6.4E-45 T 23-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RPE_RS00005 95e25565c888b446682a87dc883c6ad5 474 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 432 451 6.4E-45 T 23-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RPE_RS00005 95e25565c888b446682a87dc883c6ad5 474 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 168 188 6.4E-45 T 23-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RPE_RS00005 95e25565c888b446682a87dc883c6ad5 474 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 264 291 6.4E-45 T 23-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RPE_RS00005 95e25565c888b446682a87dc883c6ad5 474 ProSitePatterns PS01008 DnaA protein signature. 432 451 - T 23-04-2016 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 RPE_RS00005 95e25565c888b446682a87dc883c6ad5 474 Pfam PF00308 Bacterial dnaA protein 132 355 5.1E-73 T 23-04-2016 IPR013317 Chromosomal replication initiator protein DnaA RPE_RS00005 95e25565c888b446682a87dc883c6ad5 474 Gene3D G3DSA:1.10.8.60 301 372 2.0E-19 T 23-04-2016 RPE_RS00005 95e25565c888b446682a87dc883c6ad5 474 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 383 451 4.3E-31 T 23-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 RPE_RS00005 95e25565c888b446682a87dc883c6ad5 474 PANTHER PTHR30050 4 106 1.4E-183 T 23-04-2016 RPE_RS00005 95e25565c888b446682a87dc883c6ad5 474 PANTHER PTHR30050 130 474 1.4E-183 T 23-04-2016 RPE_RS00005 95e25565c888b446682a87dc883c6ad5 474 SMART SM00760 382 451 1.8E-41 T 23-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 RPE_RS00005 95e25565c888b446682a87dc883c6ad5 474 Gene3D G3DSA:1.10.1750.10 373 474 7.5E-41 T 23-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 RPE_RS00005 95e25565c888b446682a87dc883c6ad5 474 PANTHER PTHR30050:SF2 4 106 1.4E-183 T 23-04-2016 RPE_RS00005 95e25565c888b446682a87dc883c6ad5 474 PANTHER PTHR30050:SF2 130 474 1.4E-183 T 23-04-2016 RPE_RS00005 95e25565c888b446682a87dc883c6ad5 474 SMART SM00382 167 293 0.0055 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS13040 038c61fc20321741c5a467bc2860e0a7 291 Gene3D G3DSA:3.10.180.10 2 108 2.8E-8 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RPE_RS13040 038c61fc20321741c5a467bc2860e0a7 291 Pfam PF13468 Glyoxalase-like domain 5 193 3.4E-37 T 23-04-2016 IPR025870 Glyoxalase-like domain RPE_RS13040 038c61fc20321741c5a467bc2860e0a7 291 SUPERFAMILY SSF54593 3 267 9.42E-11 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RPE_RS06265 0b691b10a16d4f5ac74a55e5b5c3bcf4 70 Gene3D G3DSA:2.20.28.10 15 67 4.2E-21 T 23-04-2016 IPR004039 Rubredoxin-type fold RPE_RS06265 0b691b10a16d4f5ac74a55e5b5c3bcf4 70 PRINTS PR00163 Rubredoxin signature 17 33 2.5E-9 T 23-04-2016 IPR024935 Rubredoxin domain GO:0005506 RPE_RS06265 0b691b10a16d4f5ac74a55e5b5c3bcf4 70 PRINTS PR00163 Rubredoxin signature 47 63 2.5E-9 T 23-04-2016 IPR024935 Rubredoxin domain GO:0005506 RPE_RS06265 0b691b10a16d4f5ac74a55e5b5c3bcf4 70 SUPERFAMILY SSF57802 16 67 3.08E-19 T 23-04-2016 RPE_RS06265 0b691b10a16d4f5ac74a55e5b5c3bcf4 70 ProSitePatterns PS00202 Rubredoxin signature. 47 57 - T 23-04-2016 IPR018527 Rubredoxin, iron-binding site GO:0046872 RPE_RS06265 0b691b10a16d4f5ac74a55e5b5c3bcf4 70 Pfam PF00301 Rubredoxin 17 63 2.9E-20 T 23-04-2016 IPR024935 Rubredoxin domain GO:0005506 RPE_RS00965 c4c6c5b3d66edd4f061a2083864848ea 245 SUPERFAMILY SSF54719 129 238 1.83E-39 T 23-04-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RPE_RS00965 c4c6c5b3d66edd4f061a2083864848ea 245 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 133 234 1.4E-35 T 23-04-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RPE_RS00965 c4c6c5b3d66edd4f061a2083864848ea 245 PRINTS PR01703 Manganese superoxide dismutase signature 162 170 1.8E-22 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RPE_RS00965 c4c6c5b3d66edd4f061a2083864848ea 245 PRINTS PR01703 Manganese superoxide dismutase signature 110 123 1.8E-22 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RPE_RS00965 c4c6c5b3d66edd4f061a2083864848ea 245 PRINTS PR01703 Manganese superoxide dismutase signature 43 54 1.8E-22 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RPE_RS00965 c4c6c5b3d66edd4f061a2083864848ea 245 PRINTS PR01703 Manganese superoxide dismutase signature 199 211 1.8E-22 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RPE_RS00965 c4c6c5b3d66edd4f061a2083864848ea 245 PRINTS PR01703 Manganese superoxide dismutase signature 64 77 1.8E-22 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RPE_RS00965 c4c6c5b3d66edd4f061a2083864848ea 245 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 201 208 - T 23-04-2016 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RPE_RS00965 c4c6c5b3d66edd4f061a2083864848ea 245 Gene3D G3DSA:1.10.287.990 57 126 1.8E-27 T 23-04-2016 RPE_RS00965 c4c6c5b3d66edd4f061a2083864848ea 245 PANTHER PTHR11404 11 240 3.9E-93 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RPE_RS00965 c4c6c5b3d66edd4f061a2083864848ea 245 PIRSF PIRSF000349 10 243 5.3E-76 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RPE_RS00965 c4c6c5b3d66edd4f061a2083864848ea 245 SUPERFAMILY SSF46609 37 128 1.2E-34 T 23-04-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RPE_RS00965 c4c6c5b3d66edd4f061a2083864848ea 245 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 40 126 2.8E-28 T 23-04-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RPE_RS03655 19d3abd1067d9381724c2e009ace4a66 906 PANTHER PTHR24031:SF122 298 440 1.6E-59 T 23-04-2016 RPE_RS03655 19d3abd1067d9381724c2e009ace4a66 906 PANTHER PTHR24031:SF122 139 277 1.6E-59 T 23-04-2016 RPE_RS03655 19d3abd1067d9381724c2e009ace4a66 906 SMART SM00487 23 290 4.6E-27 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RPE_RS03655 19d3abd1067d9381724c2e009ace4a66 906 Pfam PF00271 Helicase conserved C-terminal domain 319 422 2.4E-16 T 23-04-2016 IPR001650 Helicase, C-terminal RPE_RS03655 19d3abd1067d9381724c2e009ace4a66 906 PANTHER PTHR24031:SF122 867 879 1.6E-59 T 23-04-2016 RPE_RS03655 19d3abd1067d9381724c2e009ace4a66 906 Pfam PF08494 DEAD/H associated 680 869 2.5E-46 T 23-04-2016 IPR013701 DEAD/H associated GO:0005524|GO:0016818 RPE_RS03655 19d3abd1067d9381724c2e009ace4a66 906 SUPERFAMILY SSF52540 9 71 2.24E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS03655 19d3abd1067d9381724c2e009ace4a66 906 PANTHER PTHR24031:SF122 644 722 1.6E-59 T 23-04-2016 RPE_RS03655 19d3abd1067d9381724c2e009ace4a66 906 PANTHER PTHR24031:SF122 30 66 1.6E-59 T 23-04-2016 RPE_RS03655 19d3abd1067d9381724c2e009ace4a66 906 PIRSF PIRSF037307 118 904 1.2E-182 T 23-04-2016 IPR017170 Lhr-like ATP-dependent RNA helicase, predicted GO:0005524|GO:0016818 RPE_RS03655 19d3abd1067d9381724c2e009ace4a66 906 PANTHER PTHR24031 298 440 1.6E-59 T 23-04-2016 RPE_RS03655 19d3abd1067d9381724c2e009ace4a66 906 PANTHER PTHR24031 139 277 1.6E-59 T 23-04-2016 RPE_RS03655 19d3abd1067d9381724c2e009ace4a66 906 PANTHER PTHR24031 644 722 1.6E-59 T 23-04-2016 RPE_RS03655 19d3abd1067d9381724c2e009ace4a66 906 SUPERFAMILY SSF52540 142 434 1.41E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS03655 19d3abd1067d9381724c2e009ace4a66 906 PANTHER PTHR24031 30 66 1.6E-59 T 23-04-2016 RPE_RS03655 19d3abd1067d9381724c2e009ace4a66 906 PANTHER PTHR24031 867 879 1.6E-59 T 23-04-2016 RPE_RS03655 19d3abd1067d9381724c2e009ace4a66 906 Pfam PF00270 DEAD/DEAH box helicase 31 265 2.1E-20 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RPE_RS03655 19d3abd1067d9381724c2e009ace4a66 906 Gene3D G3DSA:3.40.50.300 312 444 4.4E-28 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS03655 19d3abd1067d9381724c2e009ace4a66 906 Gene3D G3DSA:3.40.50.300 137 263 1.0E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS03655 19d3abd1067d9381724c2e009ace4a66 906 Gene3D G3DSA:3.40.50.300 16 69 1.0E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS03655 19d3abd1067d9381724c2e009ace4a66 906 TIGRFAM TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated 116 897 0.0 T 23-04-2016 IPR026362 DEXH box helicase, DNA ligase-associated RPE_RS03655 19d3abd1067d9381724c2e009ace4a66 906 SMART SM00490 342 427 1.4E-14 T 23-04-2016 IPR001650 Helicase, C-terminal RPE_RS04960 bdaeed44b11a4075784187f255de07d2 605 Gene3D G3DSA:3.40.50.970 350 596 2.1E-31 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS04960 bdaeed44b11a4075784187f255de07d2 605 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 29 192 7.3E-16 T 23-04-2016 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 RPE_RS04960 bdaeed44b11a4075784187f255de07d2 605 PIRSF PIRSF006439 9 604 2.0E-227 T 23-04-2016 IPR017721 Indolepyruvate ferredoxin oxidoreductase, alpha subunit GO:0043805|GO:0055114 RPE_RS04960 bdaeed44b11a4075784187f255de07d2 605 SUPERFAMILY SSF52922 239 297 8.75E-6 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RPE_RS04960 bdaeed44b11a4075784187f255de07d2 605 PANTHER PTHR18968 350 598 1.7E-64 T 23-04-2016 RPE_RS04960 bdaeed44b11a4075784187f255de07d2 605 SUPERFAMILY SSF54862 528 599 5.24E-8 T 23-04-2016 RPE_RS04960 bdaeed44b11a4075784187f255de07d2 605 SUPERFAMILY SSF52518 349 547 6.73E-28 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS04960 bdaeed44b11a4075784187f255de07d2 605 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 382 523 3.2E-29 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RPE_RS04960 bdaeed44b11a4075784187f255de07d2 605 TIGRFAM TIGR03336 IOR_alpha: indolepyruvate ferredoxin oxidoreductase, alpha subunit 20 597 1.3E-217 T 23-04-2016 IPR017721 Indolepyruvate ferredoxin oxidoreductase, alpha subunit GO:0043805|GO:0055114 RPE_RS04960 bdaeed44b11a4075784187f255de07d2 605 PANTHER PTHR18968:SF136 350 598 1.7E-64 T 23-04-2016 RPE_RS04960 bdaeed44b11a4075784187f255de07d2 605 Gene3D G3DSA:3.40.50.970 12 194 8.6E-60 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS04960 bdaeed44b11a4075784187f255de07d2 605 SUPERFAMILY SSF52518 17 239 1.66E-61 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS11680 9d783fa47856ee7fc02e749d0ef92a83 138 SUPERFAMILY SSF52172 1 124 1.57E-31 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS11680 9d783fa47856ee7fc02e749d0ef92a83 138 Gene3D G3DSA:3.40.50.2300 1 128 6.2E-31 T 23-04-2016 RPE_RS11680 9d783fa47856ee7fc02e749d0ef92a83 138 SMART SM00448 2 120 5.4E-23 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS11680 9d783fa47856ee7fc02e749d0ef92a83 138 Pfam PF00072 Response regulator receiver domain 4 120 1.8E-20 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS11680 9d783fa47856ee7fc02e749d0ef92a83 138 PANTHER PTHR26402 2 124 7.9E-30 T 23-04-2016 RPE_RS20400 ddd811671a5eb4adff28aea32b8b13bb 304 PANTHER PTHR30193:SF5 1 52 7.8E-112 T 23-04-2016 RPE_RS20400 ddd811671a5eb4adff28aea32b8b13bb 304 PANTHER PTHR30193:SF5 68 304 7.8E-112 T 23-04-2016 RPE_RS20400 ddd811671a5eb4adff28aea32b8b13bb 304 PANTHER PTHR30193 1 52 7.8E-112 T 23-04-2016 RPE_RS20400 ddd811671a5eb4adff28aea32b8b13bb 304 PANTHER PTHR30193 68 304 7.8E-112 T 23-04-2016 RPE_RS20400 ddd811671a5eb4adff28aea32b8b13bb 304 SUPERFAMILY SSF161098 10 34 5.63E-53 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS20400 ddd811671a5eb4adff28aea32b8b13bb 304 SUPERFAMILY SSF161098 64 296 5.63E-53 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS20400 ddd811671a5eb4adff28aea32b8b13bb 304 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 104 298 2.5E-17 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS20400 ddd811671a5eb4adff28aea32b8b13bb 304 Gene3D G3DSA:1.10.3720.10 10 292 6.0E-50 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS11830 c58cdc9f421201175c400d8afe8836a9 181 Pfam PF00072 Response regulator receiver domain 12 125 6.0E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS11830 c58cdc9f421201175c400d8afe8836a9 181 Gene3D G3DSA:3.40.50.2300 7 132 1.3E-32 T 23-04-2016 RPE_RS11830 c58cdc9f421201175c400d8afe8836a9 181 PANTHER PTHR26402 9 125 1.7E-32 T 23-04-2016 RPE_RS11830 c58cdc9f421201175c400d8afe8836a9 181 SUPERFAMILY SSF52172 7 144 4.55E-35 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS11830 c58cdc9f421201175c400d8afe8836a9 181 SMART SM00448 9 125 3.4E-30 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS12980 2c4485f672f4bee109a97e988d0dd2d1 356 SUPERFAMILY SSF51161 44 334 1.36E-72 T 23-04-2016 IPR011004 Trimeric LpxA-like RPE_RS12980 2c4485f672f4bee109a97e988d0dd2d1 356 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 147 181 1.5E-9 T 23-04-2016 IPR001451 Hexapeptide repeat RPE_RS12980 2c4485f672f4bee109a97e988d0dd2d1 356 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 240 273 1.2E-8 T 23-04-2016 IPR001451 Hexapeptide repeat RPE_RS12980 2c4485f672f4bee109a97e988d0dd2d1 356 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 137 165 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 RPE_RS12980 2c4485f672f4bee109a97e988d0dd2d1 356 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 285 313 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 RPE_RS12980 2c4485f672f4bee109a97e988d0dd2d1 356 Gene3D G3DSA:2.160.10.10 229 339 2.4E-31 T 23-04-2016 RPE_RS12980 2c4485f672f4bee109a97e988d0dd2d1 356 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 7 343 33.94 T 23-04-2016 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 UniPathway: UPA00973 RPE_RS12980 2c4485f672f4bee109a97e988d0dd2d1 356 Gene3D G3DSA:2.160.10.10 126 228 1.3E-24 T 23-04-2016 RPE_RS12980 2c4485f672f4bee109a97e988d0dd2d1 356 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 24 343 2.6E-101 T 23-04-2016 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 UniPathway: UPA00973 RPE_RS12980 2c4485f672f4bee109a97e988d0dd2d1 356 PANTHER PTHR22572:SF117 115 313 8.1E-47 T 23-04-2016 RPE_RS12980 2c4485f672f4bee109a97e988d0dd2d1 356 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 34 100 3.4E-16 T 23-04-2016 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 UniPathway: UPA00973 RPE_RS12980 2c4485f672f4bee109a97e988d0dd2d1 356 PANTHER PTHR22572 115 313 8.1E-47 T 23-04-2016 RPE_RS02690 50062c52858d3d33f81ec057e7861ba8 347 Gene3D G3DSA:3.40.190.10 151 228 3.3E-5 T 23-04-2016 RPE_RS02690 50062c52858d3d33f81ec057e7861ba8 347 Gene3D G3DSA:3.40.190.10 39 150 1.3E-18 T 23-04-2016 RPE_RS02690 50062c52858d3d33f81ec057e7861ba8 347 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 66 79 - T 23-04-2016 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 RPE_RS02690 50062c52858d3d33f81ec057e7861ba8 347 SMART SM00062 43 272 3.8E-41 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RPE_RS02690 50062c52858d3d33f81ec057e7861ba8 347 PANTHER PTHR30085 14 316 4.2E-136 T 23-04-2016 RPE_RS02690 50062c52858d3d33f81ec057e7861ba8 347 PANTHER PTHR30085:SF5 14 316 4.2E-136 T 23-04-2016 RPE_RS02690 50062c52858d3d33f81ec057e7861ba8 347 SUPERFAMILY SSF53850 44 263 4.04E-39 T 23-04-2016 RPE_RS02690 50062c52858d3d33f81ec057e7861ba8 347 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 46 262 2.9E-22 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RPE_RS06620 72462783bf5c5c243a73ba5c54e99a1f 565 PANTHER PTHR32089:SF40 283 562 1.8E-203 T 23-04-2016 RPE_RS06620 72462783bf5c5c243a73ba5c54e99a1f 565 PANTHER PTHR32089:SF40 79 250 1.8E-203 T 23-04-2016 RPE_RS06620 72462783bf5c5c243a73ba5c54e99a1f 565 Pfam PF00672 HAMP domain 196 256 9.3E-13 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS06620 72462783bf5c5c243a73ba5c54e99a1f 565 SMART SM00283 301 559 2.4E-50 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS06620 72462783bf5c5c243a73ba5c54e99a1f 565 Gene3D G3DSA:1.10.287.950 325 526 6.0E-50 T 23-04-2016 RPE_RS06620 72462783bf5c5c243a73ba5c54e99a1f 565 Pfam PF17200 Single Cache domain 2 41 190 1.4E-44 T 23-04-2016 IPR033480 Single Cache domain 2 RPE_RS06620 72462783bf5c5c243a73ba5c54e99a1f 565 SUPERFAMILY SSF58104 311 558 7.06E-65 T 23-04-2016 RPE_RS06620 72462783bf5c5c243a73ba5c54e99a1f 565 SUPERFAMILY SSF58104 245 270 7.06E-65 T 23-04-2016 RPE_RS06620 72462783bf5c5c243a73ba5c54e99a1f 565 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 377 558 1.7E-38 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS06620 72462783bf5c5c243a73ba5c54e99a1f 565 SMART SM00304 215 268 5.2E-8 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS06620 72462783bf5c5c243a73ba5c54e99a1f 565 SMART SM01049 38 132 1.0E-33 T 23-04-2016 IPR033480 Single Cache domain 2 RPE_RS06620 72462783bf5c5c243a73ba5c54e99a1f 565 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 432 461 1.9E-7 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS06620 72462783bf5c5c243a73ba5c54e99a1f 565 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 333 362 1.9E-7 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS06620 72462783bf5c5c243a73ba5c54e99a1f 565 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 480 509 1.9E-7 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS06620 72462783bf5c5c243a73ba5c54e99a1f 565 PANTHER PTHR32089 283 562 1.8E-203 T 23-04-2016 RPE_RS06620 72462783bf5c5c243a73ba5c54e99a1f 565 PANTHER PTHR32089 79 250 1.8E-203 T 23-04-2016 RPE_RS06620 72462783bf5c5c243a73ba5c54e99a1f 565 Gene3D G3DSA:3.30.450.20 28 185 1.2E-50 T 23-04-2016 RPE_RS10695 05b02b021f8ab16100360530d1ebf2bf 253 PIRSF PIRSF006648 10 252 1.8E-30 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RPE_RS10695 05b02b021f8ab16100360530d1ebf2bf 253 PANTHER PTHR30413 1 253 1.8E-122 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RPE_RS10695 05b02b021f8ab16100360530d1ebf2bf 253 Pfam PF01061 ABC-2 type transporter 6 216 1.8E-36 T 23-04-2016 IPR013525 ABC-2 type transporter GO:0016020 RPE_RS10695 05b02b021f8ab16100360530d1ebf2bf 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 136 160 1.6E-13 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RPE_RS10695 05b02b021f8ab16100360530d1ebf2bf 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 193 212 1.6E-13 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RPE_RS10695 05b02b021f8ab16100360530d1ebf2bf 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 99 124 1.6E-13 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RPE_RS10695 05b02b021f8ab16100360530d1ebf2bf 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 173 192 1.6E-13 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RPE_RS10695 05b02b021f8ab16100360530d1ebf2bf 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 21 42 1.6E-13 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RPE_RS10695 05b02b021f8ab16100360530d1ebf2bf 253 PANTHER PTHR30413:SF5 1 253 1.8E-122 T 23-04-2016 RPE_RS15175 af26cc9409ed523d1fd6d27bb074eb42 313 Pfam PF01926 50S ribosome-binding GTPase 23 137 2.5E-23 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RPE_RS15175 af26cc9409ed523d1fd6d27bb074eb42 313 Gene3D G3DSA:3.30.300.20 200 304 3.7E-38 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta RPE_RS15175 af26cc9409ed523d1fd6d27bb074eb42 313 Hamap MF_00367 GTPase Era [era]. 18 308 32.774 T 23-04-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 RPE_RS15175 af26cc9409ed523d1fd6d27bb074eb42 313 Pfam PF07650 KH domain 220 296 8.7E-18 T 23-04-2016 IPR004044 K Homology domain, type 2 GO:0003723 RPE_RS15175 af26cc9409ed523d1fd6d27bb074eb42 313 SUPERFAMILY SSF54814 193 309 1.05E-38 T 23-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 RPE_RS15175 af26cc9409ed523d1fd6d27bb074eb42 313 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 19 177 1.9E-25 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RPE_RS15175 af26cc9409ed523d1fd6d27bb074eb42 313 PANTHER PTHR11649:SF3 17 307 1.8E-116 T 23-04-2016 RPE_RS15175 af26cc9409ed523d1fd6d27bb074eb42 313 TIGRFAM TIGR00436 era: GTP-binding protein Era 21 291 2.2E-76 T 23-04-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 RPE_RS15175 af26cc9409ed523d1fd6d27bb074eb42 313 PANTHER PTHR11649 17 307 1.8E-116 T 23-04-2016 RPE_RS15175 af26cc9409ed523d1fd6d27bb074eb42 313 Gene3D G3DSA:3.40.50.300 18 185 5.0E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15175 af26cc9409ed523d1fd6d27bb074eb42 313 SUPERFAMILY SSF52540 23 194 9.57E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10405 25a4010261ae42342ef7e9d03b07780c 176 Pfam PF05239 PRC-barrel domain 49 104 3.3E-14 T 23-04-2016 IPR027275 PRC-barrel domain RPE_RS10405 25a4010261ae42342ef7e9d03b07780c 176 PANTHER PTHR36505:SF2 151 176 2.7E-39 T 23-04-2016 RPE_RS10405 25a4010261ae42342ef7e9d03b07780c 176 PANTHER PTHR36505:SF2 1 110 2.7E-39 T 23-04-2016 RPE_RS10405 25a4010261ae42342ef7e9d03b07780c 176 Gene3D G3DSA:2.30.30.240 48 106 4.8E-14 T 23-04-2016 RPE_RS10405 25a4010261ae42342ef7e9d03b07780c 176 SUPERFAMILY SSF50346 48 109 1.37E-15 T 23-04-2016 IPR011033 PRC-barrel-like RPE_RS10405 25a4010261ae42342ef7e9d03b07780c 176 PANTHER PTHR36505 151 176 2.7E-39 T 23-04-2016 RPE_RS10405 25a4010261ae42342ef7e9d03b07780c 176 PANTHER PTHR36505 1 110 2.7E-39 T 23-04-2016 RPE_RS18220 6381844eea1b02685ffd973cfba30d91 370 PANTHER PTHR30213 47 370 1.8E-112 T 23-04-2016 RPE_RS18220 6381844eea1b02685ffd973cfba30d91 370 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 79 338 3.2E-28 T 23-04-2016 IPR017039 Virulence factor BrkB RPE_RS18220 6381844eea1b02685ffd973cfba30d91 370 PANTHER PTHR30213:SF2 47 370 1.8E-112 T 23-04-2016 RPE_RS18220 6381844eea1b02685ffd973cfba30d91 370 Pfam PF03631 Virulence factor BrkB 87 341 4.8E-61 T 23-04-2016 IPR017039 Virulence factor BrkB RPE_RS18685 dbaa31bbc13327b2e50b85aa95e284e5 101 Pfam PF00699 Urease beta subunit 3 100 1.2E-47 T 23-04-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RPE_RS18685 dbaa31bbc13327b2e50b85aa95e284e5 101 Gene3D G3DSA:2.10.150.10 1 101 7.9E-53 T 23-04-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RPE_RS18685 dbaa31bbc13327b2e50b85aa95e284e5 101 TIGRFAM TIGR00192 urease_beta: urease, beta subunit 1 100 8.3E-47 T 23-04-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RPE_RS18685 dbaa31bbc13327b2e50b85aa95e284e5 101 PANTHER PTHR33569:SF1 1 101 9.1E-69 T 23-04-2016 RPE_RS18685 dbaa31bbc13327b2e50b85aa95e284e5 101 SUPERFAMILY SSF51278 1 101 5.89E-49 T 23-04-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RPE_RS18685 dbaa31bbc13327b2e50b85aa95e284e5 101 PANTHER PTHR33569 1 101 9.1E-69 T 23-04-2016 RPE_RS18685 dbaa31bbc13327b2e50b85aa95e284e5 101 Hamap MF_01954 Urease subunit beta [ureB]. 1 101 32.942 T 23-04-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RPE_RS00065 6da8ba6632bde2b96346232ab002cb17 485 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 272 283 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RPE_RS00065 6da8ba6632bde2b96346232ab002cb17 485 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 360 485 5.3E-26 T 23-04-2016 IPR032879 FixG, C-terminal immunoglobulin-like domain RPE_RS00065 6da8ba6632bde2b96346232ab002cb17 485 PANTHER PTHR24960:SF45 1 399 1.1E-138 T 23-04-2016 RPE_RS00065 6da8ba6632bde2b96346232ab002cb17 485 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 34 470 1.0E-159 T 23-04-2016 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021 RPE_RS00065 6da8ba6632bde2b96346232ab002cb17 485 Gene3D G3DSA:1.10.1060.10 221 280 7.3E-8 T 23-04-2016 RPE_RS00065 6da8ba6632bde2b96346232ab002cb17 485 SUPERFAMILY SSF54862 103 125 5.11E-30 T 23-04-2016 RPE_RS00065 6da8ba6632bde2b96346232ab002cb17 485 SUPERFAMILY SSF54862 171 334 5.11E-30 T 23-04-2016 RPE_RS00065 6da8ba6632bde2b96346232ab002cb17 485 PANTHER PTHR24960 1 399 1.1E-138 T 23-04-2016 RPE_RS00065 6da8ba6632bde2b96346232ab002cb17 485 Pfam PF12801 4Fe-4S binding domain 95 130 1.7E-10 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RPE_RS00065 6da8ba6632bde2b96346232ab002cb17 485 Pfam PF13746 4Fe-4S dicluster domain 217 324 8.9E-40 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RPE_RS00065 6da8ba6632bde2b96346232ab002cb17 485 Gene3D G3DSA:2.60.40.10 360 485 3.5E-28 T 23-04-2016 IPR013783 Immunoglobulin-like fold RPE_RS00065 6da8ba6632bde2b96346232ab002cb17 485 Gene3D G3DSA:3.30.70.20 281 312 1.3E-5 T 23-04-2016 RPE_RS07800 2dc9133aa9ac516ee60954bcbc01e227 136 PANTHER PTHR30435:SF12 3 133 4.6E-22 T 23-04-2016 RPE_RS07800 2dc9133aa9ac516ee60954bcbc01e227 136 PIRSF PIRSF002889 1 136 4.2E-17 T 23-04-2016 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 RPE_RS07800 2dc9133aa9ac516ee60954bcbc01e227 136 Pfam PF00460 Flagella basal body rod protein 13 39 3.2E-5 T 23-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RPE_RS07800 2dc9133aa9ac516ee60954bcbc01e227 136 PANTHER PTHR30435 3 133 4.6E-22 T 23-04-2016 RPE_RS07800 2dc9133aa9ac516ee60954bcbc01e227 136 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 15 35 - T 23-04-2016 IPR019776 Flagellar basal body rod protein, conserved site RPE_RS13460 435b0f1b6c5cd2c000eae5ae699691df 674 PANTHER PTHR11624:SF1 347 673 0.0 T 23-04-2016 RPE_RS13460 435b0f1b6c5cd2c000eae5ae699691df 674 PANTHER PTHR11624 12 319 0.0 T 23-04-2016 IPR033247 Transketolase family RPE_RS13460 435b0f1b6c5cd2c000eae5ae699691df 674 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 17 326 9.0E-138 T 23-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RPE_RS13460 435b0f1b6c5cd2c000eae5ae699691df 674 SUPERFAMILY SSF52922 542 671 2.49E-40 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RPE_RS13460 435b0f1b6c5cd2c000eae5ae699691df 674 TIGRFAM TIGR00232 tktlase_bact: transketolase 18 669 5.0E-254 T 23-04-2016 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 RPE_RS13460 435b0f1b6c5cd2c000eae5ae699691df 674 SUPERFAMILY SSF52518 348 532 6.7E-67 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS13460 435b0f1b6c5cd2c000eae5ae699691df 674 Pfam PF02780 Transketolase, C-terminal domain 550 661 1.4E-13 T 23-04-2016 IPR033248 Transketolase, C-terminal domain RPE_RS13460 435b0f1b6c5cd2c000eae5ae699691df 674 Gene3D G3DSA:3.40.50.970 16 326 9.9E-121 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS13460 435b0f1b6c5cd2c000eae5ae699691df 674 ProSitePatterns PS00801 Transketolase signature 1. 24 44 - T 23-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RPE_RS13460 435b0f1b6c5cd2c000eae5ae699691df 674 ProSitePatterns PS00802 Transketolase signature 2. 474 490 - T 23-04-2016 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RPE_RS13460 435b0f1b6c5cd2c000eae5ae699691df 674 Pfam PF02779 Transketolase, pyrimidine binding domain 361 531 3.2E-47 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RPE_RS13460 435b0f1b6c5cd2c000eae5ae699691df 674 PANTHER PTHR11624 347 673 0.0 T 23-04-2016 IPR033247 Transketolase family RPE_RS13460 435b0f1b6c5cd2c000eae5ae699691df 674 PANTHER PTHR11624:SF1 12 319 0.0 T 23-04-2016 RPE_RS13460 435b0f1b6c5cd2c000eae5ae699691df 674 Gene3D G3DSA:3.40.50.970 335 537 4.3E-76 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS13460 435b0f1b6c5cd2c000eae5ae699691df 674 Gene3D G3DSA:3.40.50.920 547 671 1.3E-43 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RPE_RS13460 435b0f1b6c5cd2c000eae5ae699691df 674 SUPERFAMILY SSF52518 17 326 1.2E-116 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS13460 435b0f1b6c5cd2c000eae5ae699691df 674 SMART SM00861 361 532 2.8E-65 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RPE_RS22785 dca24e59e914f7bc1b2dc37ff29c6a48 455 PANTHER PTHR24423 1 7 3.3E-53 T 23-04-2016 RPE_RS22785 dca24e59e914f7bc1b2dc37ff29c6a48 455 PANTHER PTHR24423 192 453 3.3E-53 T 23-04-2016 RPE_RS22785 dca24e59e914f7bc1b2dc37ff29c6a48 455 SMART SM00388 251 309 3.4E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS22785 dca24e59e914f7bc1b2dc37ff29c6a48 455 Pfam PF00512 His Kinase A (phospho-acceptor) domain 252 305 2.8E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS22785 dca24e59e914f7bc1b2dc37ff29c6a48 455 Pfam PF00672 HAMP domain 179 246 3.6E-10 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS22785 dca24e59e914f7bc1b2dc37ff29c6a48 455 SUPERFAMILY SSF55874 311 453 1.15E-31 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS22785 dca24e59e914f7bc1b2dc37ff29c6a48 455 SUPERFAMILY SSF47384 234 305 3.53E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS22785 dca24e59e914f7bc1b2dc37ff29c6a48 455 Gene3D G3DSA:3.30.565.10 296 453 1.0E-32 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS22785 dca24e59e914f7bc1b2dc37ff29c6a48 455 Gene3D G3DSA:1.10.287.130 241 295 4.4E-11 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS22785 dca24e59e914f7bc1b2dc37ff29c6a48 455 SMART SM00387 348 455 1.4E-25 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS22785 dca24e59e914f7bc1b2dc37ff29c6a48 455 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 352 453 2.6E-20 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS22785 dca24e59e914f7bc1b2dc37ff29c6a48 455 PRINTS PR00344 Bacterial sensor protein C-terminal signature 417 435 3.5E-10 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS22785 dca24e59e914f7bc1b2dc37ff29c6a48 455 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 410 3.5E-10 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS22785 dca24e59e914f7bc1b2dc37ff29c6a48 455 PRINTS PR00344 Bacterial sensor protein C-terminal signature 382 396 3.5E-10 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS22785 dca24e59e914f7bc1b2dc37ff29c6a48 455 SMART SM00304 198 250 6.9E-5 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS04070 7ff3ca11fe58110085c0c2b3dd8ba696 384 PANTHER PTHR12526:SF374 137 373 1.3E-43 T 23-04-2016 RPE_RS04070 7ff3ca11fe58110085c0c2b3dd8ba696 384 Gene3D G3DSA:3.40.50.2000 171 354 4.3E-23 T 23-04-2016 RPE_RS04070 7ff3ca11fe58110085c0c2b3dd8ba696 384 Pfam PF13439 Glycosyltransferase Family 4 31 180 7.5E-9 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RPE_RS04070 7ff3ca11fe58110085c0c2b3dd8ba696 384 Pfam PF00534 Glycosyl transferases group 1 201 346 2.2E-32 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 RPE_RS04070 7ff3ca11fe58110085c0c2b3dd8ba696 384 SUPERFAMILY SSF53756 31 371 5.89E-61 T 23-04-2016 RPE_RS04070 7ff3ca11fe58110085c0c2b3dd8ba696 384 PANTHER PTHR12526 137 373 1.3E-43 T 23-04-2016 RPE_RS11135 4b7dfb72b0026819ceae5696ac750ece 259 PANTHER PTHR21091 1 224 3.3E-55 T 23-04-2016 RPE_RS11135 4b7dfb72b0026819ceae5696ac750ece 259 Gene3D G3DSA:3.30.950.10 111 232 2.1E-36 T 23-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 RPE_RS11135 4b7dfb72b0026819ceae5696ac750ece 259 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 76 109 - T 23-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RPE_RS11135 4b7dfb72b0026819ceae5696ac750ece 259 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 3 208 2.1E-40 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RPE_RS11135 4b7dfb72b0026819ceae5696ac750ece 259 SUPERFAMILY SSF53790 2 248 6.15E-62 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RPE_RS11135 4b7dfb72b0026819ceae5696ac750ece 259 Gene3D G3DSA:3.40.1010.10 2 110 7.1E-30 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 RPE_RS11135 4b7dfb72b0026819ceae5696ac750ece 259 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 6 20 - T 23-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RPE_RS11135 4b7dfb72b0026819ceae5696ac750ece 259 PANTHER PTHR21091:SF17 1 224 3.3E-55 T 23-04-2016 RPE_RS11135 4b7dfb72b0026819ceae5696ac750ece 259 TIGRFAM TIGR01465 cobM_cbiF: precorrin-4 C11-methyltransferase 3 249 8.0E-95 T 23-04-2016 IPR006362 Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase GO:0009236|GO:0046026 RPE_RS01905 6aa1e2764aac903269fbaba8ef2caa68 279 Pfam PF03618 Kinase/pyrophosphorylase 10 266 3.3E-87 T 23-04-2016 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 RPE_RS01905 6aa1e2764aac903269fbaba8ef2caa68 279 PANTHER PTHR31756:SF3 1 273 4.4E-98 T 23-04-2016 RPE_RS01905 6aa1e2764aac903269fbaba8ef2caa68 279 PANTHER PTHR31756 1 273 4.4E-98 T 23-04-2016 RPE_RS01905 6aa1e2764aac903269fbaba8ef2caa68 279 Hamap MF_00921 Putative pyruvate, phosphate dikinase regulatory protein. 8 272 54.878 T 23-04-2016 IPR026565 Putative pyruvate, phosphate dikinase regulatory protein RPE_RS03385 2251be306a2c52f6a5f41e9ff0cfdb9b 456 TIGRFAM TIGR01436 glu_cys_lig_pln: glutamate--cysteine ligase 10 452 9.9E-201 T 23-04-2016 IPR011556 Glutamate--cysteine ligase, plant GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255|UniPathway: UPA00142 RPE_RS03385 2251be306a2c52f6a5f41e9ff0cfdb9b 456 PANTHER PTHR34378 14 456 1.2E-237 T 23-04-2016 RPE_RS03385 2251be306a2c52f6a5f41e9ff0cfdb9b 456 SUPERFAMILY SSF55931 306 452 2.94E-72 T 23-04-2016 RPE_RS03385 2251be306a2c52f6a5f41e9ff0cfdb9b 456 SUPERFAMILY SSF55931 25 267 2.94E-72 T 23-04-2016 RPE_RS03385 2251be306a2c52f6a5f41e9ff0cfdb9b 456 PANTHER PTHR34378:SF1 14 456 1.2E-237 T 23-04-2016 RPE_RS03385 2251be306a2c52f6a5f41e9ff0cfdb9b 456 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 57 360 1.1E-105 T 23-04-2016 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 RPE_RS03385 2251be306a2c52f6a5f41e9ff0cfdb9b 456 PIRSF PIRSF017901 1 456 7.6E-180 T 23-04-2016 RPE_RS02510 1634d87ab1af576da93e23930479b70c 184 PANTHER PTHR10938 17 184 7.5E-63 T 23-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 RPE_RS02510 1634d87ab1af576da93e23930479b70c 184 SUPERFAMILY SSF55200 100 183 5.49E-31 T 23-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 RPE_RS02510 1634d87ab1af576da93e23930479b70c 184 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 23 92 1.1E-27 T 23-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 RPE_RS02510 1634d87ab1af576da93e23930479b70c 184 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 24 184 3.4E-63 T 23-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 RPE_RS02510 1634d87ab1af576da93e23930479b70c 184 Gene3D G3DSA:3.10.20.80 18 94 1.5E-31 T 23-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 RPE_RS02510 1634d87ab1af576da93e23930479b70c 184 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 16 184 27.416 T 23-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 RPE_RS02510 1634d87ab1af576da93e23930479b70c 184 SUPERFAMILY SSF54364 20 94 6.02E-26 T 23-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 RPE_RS02510 1634d87ab1af576da93e23930479b70c 184 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 99 183 3.5E-36 T 23-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 RPE_RS02510 1634d87ab1af576da93e23930479b70c 184 Gene3D G3DSA:3.30.110.10 95 183 1.4E-36 T 23-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 RPE_RS16310 276ce87332147d8c8b30795f459e2024 518 PANTHER PTHR10629 224 512 5.2E-35 T 23-04-2016 RPE_RS16310 276ce87332147d8c8b30795f459e2024 518 PANTHER PTHR10629 4 200 5.2E-35 T 23-04-2016 RPE_RS16310 276ce87332147d8c8b30795f459e2024 518 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 170 184 1.1E-15 T 23-04-2016 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 RPE_RS16310 276ce87332147d8c8b30795f459e2024 518 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 244 257 1.1E-15 T 23-04-2016 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 RPE_RS16310 276ce87332147d8c8b30795f459e2024 518 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 9 25 1.1E-15 T 23-04-2016 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 RPE_RS16310 276ce87332147d8c8b30795f459e2024 518 Gene3D G3DSA:3.90.120.10 434 495 4.8E-11 T 23-04-2016 RPE_RS16310 276ce87332147d8c8b30795f459e2024 518 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 126 506 8.1E-38 T 23-04-2016 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 RPE_RS16310 276ce87332147d8c8b30795f459e2024 518 Pfam PF00145 C-5 cytosine-specific DNA methylase 118 507 2.6E-43 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS16310 276ce87332147d8c8b30795f459e2024 518 PANTHER PTHR10629:SF32 224 512 5.2E-35 T 23-04-2016 RPE_RS16310 276ce87332147d8c8b30795f459e2024 518 PANTHER PTHR10629:SF32 4 200 5.2E-35 T 23-04-2016 RPE_RS16310 276ce87332147d8c8b30795f459e2024 518 SUPERFAMILY SSF53335 7 65 1.05E-64 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS16310 276ce87332147d8c8b30795f459e2024 518 SUPERFAMILY SSF53335 107 294 1.05E-64 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS16310 276ce87332147d8c8b30795f459e2024 518 SUPERFAMILY SSF53335 370 508 1.05E-64 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS16310 276ce87332147d8c8b30795f459e2024 518 Gene3D G3DSA:3.40.50.150 5 69 2.4E-42 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS16310 276ce87332147d8c8b30795f459e2024 518 Gene3D G3DSA:3.40.50.150 111 301 2.4E-42 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS06625 f8f021170de745e2b07fcbe7f28a992a 348 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 23 32 - T 23-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RPE_RS06625 f8f021170de745e2b07fcbe7f28a992a 348 PANTHER PTHR21091 22 346 1.2E-116 T 23-04-2016 RPE_RS06625 f8f021170de745e2b07fcbe7f28a992a 348 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 142 158 - T 23-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RPE_RS06625 f8f021170de745e2b07fcbe7f28a992a 348 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 7 347 46.739 T 23-04-2016 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RPE_RS06625 f8f021170de745e2b07fcbe7f28a992a 348 SUPERFAMILY SSF51726 6 346 5.76E-102 T 23-04-2016 RPE_RS06625 f8f021170de745e2b07fcbe7f28a992a 348 Gene3D G3DSA:3.20.20.210 7 346 2.0E-127 T 23-04-2016 RPE_RS06625 f8f021170de745e2b07fcbe7f28a992a 348 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 10 344 2.4E-121 T 23-04-2016 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RPE_RS06625 f8f021170de745e2b07fcbe7f28a992a 348 PANTHER PTHR21091:SF2 22 346 1.2E-116 T 23-04-2016 RPE_RS06625 f8f021170de745e2b07fcbe7f28a992a 348 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 8 345 3.4E-114 T 23-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RPE_RS19415 1d890f7173d6be8aa794e35088dfec48 142 ProDom PD006096 DELTA SUBUNIT NITROGENASE DINITROGENASE OXIDOREDUCTASE VANADIUM FIXATION METAL-BINDING IRON CHAIN 34 142 6.0E-60 T 23-04-2016 IPR004349 Vanadium/alternative nitrogenase delta subunit GO:0009399|GO:0016163|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 RPE_RS19415 1d890f7173d6be8aa794e35088dfec48 142 Pfam PF03139 Vanadium/alternative nitrogenase delta subunit 33 142 2.0E-46 T 23-04-2016 IPR004349 Vanadium/alternative nitrogenase delta subunit GO:0009399|GO:0016163|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 RPE_RS19415 1d890f7173d6be8aa794e35088dfec48 142 TIGRFAM TIGR02929 anfG_nitrog: Fe-only nitrogenase, delta subunit 34 142 1.3E-45 T 23-04-2016 IPR014278 Nitrogenase iron-iron, delta subunit GO:0005506|GO:0009399|GO:0016163|GO:0051536|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 RPE_RS00120 663e4bd01d0f89d7740f10fcb797666a 460 PANTHER PTHR23519 370 459 2.4E-82 T 23-04-2016 RPE_RS00120 663e4bd01d0f89d7740f10fcb797666a 460 PANTHER PTHR23519 3 350 2.4E-82 T 23-04-2016 RPE_RS00120 663e4bd01d0f89d7740f10fcb797666a 460 Pfam PF11700 Vacuole effluxer Atg22 like 70 458 7.6E-34 T 23-04-2016 IPR024671 Autophagy-related protein 22-like RPE_RS00120 663e4bd01d0f89d7740f10fcb797666a 460 Gene3D G3DSA:1.20.1250.20 257 454 1.3E-16 T 23-04-2016 RPE_RS00120 663e4bd01d0f89d7740f10fcb797666a 460 SUPERFAMILY SSF103473 21 459 6.02E-37 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS00120 663e4bd01d0f89d7740f10fcb797666a 460 Gene3D G3DSA:1.20.1250.20 36 202 1.9E-7 T 23-04-2016 RPE_RS07220 0093971d17540a6e672ab0e74e8a1534 281 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 9 270 18.041 T 23-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 RPE_RS07220 0093971d17540a6e672ab0e74e8a1534 281 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 146 158 - T 23-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 RPE_RS07220 0093971d17540a6e672ab0e74e8a1534 281 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 4 270 1.8E-66 T 23-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 RPE_RS07220 0093971d17540a6e672ab0e74e8a1534 281 PANTHER PTHR30589 1 271 7.8E-85 T 23-04-2016 RPE_RS07220 0093971d17540a6e672ab0e74e8a1534 281 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 12 263 4.3E-69 T 23-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 RPE_RS07220 0093971d17540a6e672ab0e74e8a1534 281 PANTHER PTHR30589:SF0 1 271 7.8E-85 T 23-04-2016 RPE_RS20930 e490c21797b590bd6c2dc2fe0979b214 662 Pfam PF00753 Metallo-beta-lactamase superfamily 123 349 3.6E-41 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS20930 e490c21797b590bd6c2dc2fe0979b214 662 Pfam PF14863 Alkyl sulfatase dimerisation 386 524 2.7E-56 T 23-04-2016 IPR029228 Alkyl sulfatase dimerisation domain GO:0046983 RPE_RS20930 e490c21797b590bd6c2dc2fe0979b214 662 Pfam PF14864 Alkyl sulfatase C-terminal 533 656 1.4E-32 T 23-04-2016 IPR029229 Alkyl sulfatase, C-terminal RPE_RS20930 e490c21797b590bd6c2dc2fe0979b214 662 PANTHER PTHR11935 78 215 2.7E-175 T 23-04-2016 RPE_RS20930 e490c21797b590bd6c2dc2fe0979b214 662 PANTHER PTHR11935 239 474 2.7E-175 T 23-04-2016 RPE_RS20930 e490c21797b590bd6c2dc2fe0979b214 662 PANTHER PTHR11935:SF93 78 215 2.7E-175 T 23-04-2016 RPE_RS20930 e490c21797b590bd6c2dc2fe0979b214 662 PANTHER PTHR11935:SF93 239 474 2.7E-175 T 23-04-2016 RPE_RS20930 e490c21797b590bd6c2dc2fe0979b214 662 SUPERFAMILY SSF56281 26 527 1.4E-145 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS20930 e490c21797b590bd6c2dc2fe0979b214 662 Gene3D G3DSA:3.60.15.10 112 213 2.8E-38 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS20930 e490c21797b590bd6c2dc2fe0979b214 662 Gene3D G3DSA:3.60.15.10 256 378 2.8E-38 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS20930 e490c21797b590bd6c2dc2fe0979b214 662 Gene3D G3DSA:3.30.1050.10 543 646 9.5E-8 T 23-04-2016 IPR003033 SCP2 sterol-binding domain RPE_RS20930 e490c21797b590bd6c2dc2fe0979b214 662 SMART SM00849 127 349 5.0E-21 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS20930 e490c21797b590bd6c2dc2fe0979b214 662 SUPERFAMILY SSF55718 535 656 8.24E-31 T 23-04-2016 IPR003033 SCP2 sterol-binding domain RPE_RS10285 ad44645489376b682d7f34780bdb8524 331 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 68 297 3.9E-53 T 23-04-2016 RPE_RS10285 ad44645489376b682d7f34780bdb8524 331 PANTHER PTHR35841 18 330 3.3E-17 T 23-04-2016 RPE_RS10285 ad44645489376b682d7f34780bdb8524 331 Gene3D G3DSA:3.40.190.10 154 271 6.9E-9 T 23-04-2016 RPE_RS10285 ad44645489376b682d7f34780bdb8524 331 SUPERFAMILY SSF53850 66 326 1.72E-45 T 23-04-2016 RPE_RS10285 ad44645489376b682d7f34780bdb8524 331 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 22 283 3.2E-71 T 23-04-2016 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 RPE_RS05020 c46f7b30eb297273200008fe9b9c4820 263 SUPERFAMILY SSF52096 3 261 3.37E-83 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS05020 c46f7b30eb297273200008fe9b9c4820 263 PANTHER PTHR11941:SF76 2 259 2.1E-102 T 23-04-2016 RPE_RS05020 c46f7b30eb297273200008fe9b9c4820 263 Gene3D G3DSA:3.90.226.10 4 202 1.7E-66 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS05020 c46f7b30eb297273200008fe9b9c4820 263 PANTHER PTHR11941 2 259 2.1E-102 T 23-04-2016 RPE_RS05020 c46f7b30eb297273200008fe9b9c4820 263 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 260 7.6E-65 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RPE_RS05020 c46f7b30eb297273200008fe9b9c4820 263 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 103 123 - T 23-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 RPE_RS05020 c46f7b30eb297273200008fe9b9c4820 263 Gene3D G3DSA:1.10.12.10 204 262 3.1E-20 T 23-04-2016 IPR014748 Crontonase, C-terminal RPE_RS05020 c46f7b30eb297273200008fe9b9c4820 263 TIGRFAM TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB 6 262 4.4E-121 T 23-04-2016 IPR011968 Phenylacetate degradation probable enoyl-CoA hydratase PaaB GO:0010124 KEGG: 00360+5.3.3.18|UniPathway: UPA00930 RPE_RS07450 fccc2be6162aaac394bf5a2a49384f74 1031 Gene3D G3DSA:3.40.50.150 305 387 3.9E-31 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS07450 fccc2be6162aaac394bf5a2a49384f74 1031 Gene3D G3DSA:3.40.50.150 430 586 3.9E-31 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS07450 fccc2be6162aaac394bf5a2a49384f74 1031 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 450 456 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RPE_RS07450 fccc2be6162aaac394bf5a2a49384f74 1031 SUPERFAMILY SSF53335 445 612 3.97E-37 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS07450 fccc2be6162aaac394bf5a2a49384f74 1031 SUPERFAMILY SSF53335 221 413 3.97E-37 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS07450 fccc2be6162aaac394bf5a2a49384f74 1031 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 338 352 5.7E-13 T 23-04-2016 RPE_RS07450 fccc2be6162aaac394bf5a2a49384f74 1031 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 447 459 5.7E-13 T 23-04-2016 RPE_RS07450 fccc2be6162aaac394bf5a2a49384f74 1031 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 303 319 5.7E-13 T 23-04-2016 RPE_RS07450 fccc2be6162aaac394bf5a2a49384f74 1031 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 496 520 5.7E-13 T 23-04-2016 RPE_RS07450 fccc2be6162aaac394bf5a2a49384f74 1031 Pfam PF02384 N-6 DNA Methylase 283 518 7.1E-11 T 23-04-2016 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 RPE_RS22510 099328ba82f485e1e344281b948ddb43 107 PANTHER PTHR30561:SF0 1 103 6.2E-43 T 23-04-2016 RPE_RS22510 099328ba82f485e1e344281b948ddb43 107 SUPERFAMILY SSF103481 7 105 1.19E-19 T 23-04-2016 RPE_RS22510 099328ba82f485e1e344281b948ddb43 107 Pfam PF00893 Small Multidrug Resistance protein 3 94 1.9E-30 T 23-04-2016 IPR000390 Small multidrug resistance protein family GO:0016021 RPE_RS22510 099328ba82f485e1e344281b948ddb43 107 PANTHER PTHR30561 1 103 6.2E-43 T 23-04-2016 RPE_RS07605 28cd9e1f403af43df2c21fe5eec1a342 425 SUPERFAMILY SSF48179 190 286 1.7E-15 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RPE_RS07605 28cd9e1f403af43df2c21fe5eec1a342 425 PANTHER PTHR11374:SF4 1 425 2.5E-86 T 23-04-2016 RPE_RS07605 28cd9e1f403af43df2c21fe5eec1a342 425 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 6 398 2.7E-61 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 RPE_RS07605 28cd9e1f403af43df2c21fe5eec1a342 425 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 5 164 1.8E-20 T 23-04-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 RPE_RS07605 28cd9e1f403af43df2c21fe5eec1a342 425 PIRSF PIRSF000124 1 420 7.8E-69 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 RPE_RS07605 28cd9e1f403af43df2c21fe5eec1a342 425 Gene3D G3DSA:3.40.50.720 221 422 1.1E-32 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS07605 28cd9e1f403af43df2c21fe5eec1a342 425 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 190 279 1.4E-18 T 23-04-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 RPE_RS07605 28cd9e1f403af43df2c21fe5eec1a342 425 PANTHER PTHR11374 1 425 2.5E-86 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 RPE_RS07605 28cd9e1f403af43df2c21fe5eec1a342 425 Gene3D G3DSA:3.40.50.720 4 211 4.7E-36 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS07605 28cd9e1f403af43df2c21fe5eec1a342 425 SUPERFAMILY SSF51735 7 167 9.66E-23 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS07605 28cd9e1f403af43df2c21fe5eec1a342 425 PIRSF PIRSF500134 1 423 4.6E-67 T 23-04-2016 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00500+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|UniPathway: UPA00038 RPE_RS07605 28cd9e1f403af43df2c21fe5eec1a342 425 SMART SM00984 307 405 3.6E-17 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 RPE_RS07605 28cd9e1f403af43df2c21fe5eec1a342 425 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 307 404 1.2E-15 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 RPE_RS07605 28cd9e1f403af43df2c21fe5eec1a342 425 SUPERFAMILY SSF52413 301 416 7.19E-17 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 RPE_RS02155 86be15b80fa223dc5b2bcffd8c5d1258 314 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 78 314 6.6E-112 T 23-04-2016 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 RPE_RS02155 86be15b80fa223dc5b2bcffd8c5d1258 314 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 288 309 1.8E-7 T 23-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RPE_RS02155 86be15b80fa223dc5b2bcffd8c5d1258 314 PANTHER PTHR24220 79 311 1.5E-139 T 23-04-2016 RPE_RS02155 86be15b80fa223dc5b2bcffd8c5d1258 314 SMART SM00382 102 289 2.5E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS02155 86be15b80fa223dc5b2bcffd8c5d1258 314 ProSitePatterns PS00211 ABC transporters family signature. 211 225 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS02155 86be15b80fa223dc5b2bcffd8c5d1258 314 SUPERFAMILY SSF52540 78 310 1.11E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02155 86be15b80fa223dc5b2bcffd8c5d1258 314 Gene3D G3DSA:3.40.50.300 70 305 2.0E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02155 86be15b80fa223dc5b2bcffd8c5d1258 314 PANTHER PTHR24220:SF497 79 311 1.5E-139 T 23-04-2016 RPE_RS02155 86be15b80fa223dc5b2bcffd8c5d1258 314 Pfam PF00005 ABC transporter 94 239 1.0E-32 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS14900 46c8ba3b9ee775bf5501bc4ad4f0c901 251 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 4 245 5.8E-107 T 23-04-2016 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524|GO:0006810 RPE_RS14900 46c8ba3b9ee775bf5501bc4ad4f0c901 251 SUPERFAMILY SSF52540 3 233 1.05E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14900 46c8ba3b9ee775bf5501bc4ad4f0c901 251 PANTHER PTHR24220 5 243 8.4E-123 T 23-04-2016 RPE_RS14900 46c8ba3b9ee775bf5501bc4ad4f0c901 251 Gene3D G3DSA:3.40.50.300 3 244 5.0E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14900 46c8ba3b9ee775bf5501bc4ad4f0c901 251 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS14900 46c8ba3b9ee775bf5501bc4ad4f0c901 251 SMART SM00382 28 225 9.2E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS14900 46c8ba3b9ee775bf5501bc4ad4f0c901 251 Pfam PF00005 ABC transporter 19 174 3.2E-19 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS14900 46c8ba3b9ee775bf5501bc4ad4f0c901 251 PANTHER PTHR24220:SF85 5 243 8.4E-123 T 23-04-2016 RPE_RS06690 28992fae672f2a94b8b4e74a472f49e2 331 Gene3D G3DSA:3.40.50.300 34 276 4.9E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS06690 28992fae672f2a94b8b4e74a472f49e2 331 ProSitePatterns PS00746 NifH/frxC family signature 1. 118 130 - T 23-04-2016 IPR030655 NifH/chlL conserved site RPE_RS06690 28992fae672f2a94b8b4e74a472f49e2 331 PANTHER PTHR13696 33 285 5.9E-66 T 23-04-2016 RPE_RS06690 28992fae672f2a94b8b4e74a472f49e2 331 PRINTS PR00091 Nitrogenase component II signature 61 76 5.7E-27 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RPE_RS06690 28992fae672f2a94b8b4e74a472f49e2 331 PRINTS PR00091 Nitrogenase component II signature 39 52 5.7E-27 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RPE_RS06690 28992fae672f2a94b8b4e74a472f49e2 331 PRINTS PR00091 Nitrogenase component II signature 155 170 5.7E-27 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RPE_RS06690 28992fae672f2a94b8b4e74a472f49e2 331 PRINTS PR00091 Nitrogenase component II signature 116 130 5.7E-27 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RPE_RS06690 28992fae672f2a94b8b4e74a472f49e2 331 ProSitePatterns PS00692 NifH/frxC family signature 2. 156 169 - T 23-04-2016 IPR030655 NifH/chlL conserved site RPE_RS06690 28992fae672f2a94b8b4e74a472f49e2 331 PANTHER PTHR13696:SF5 33 285 5.9E-66 T 23-04-2016 RPE_RS06690 28992fae672f2a94b8b4e74a472f49e2 331 SUPERFAMILY SSF52540 33 276 2.07E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS06690 28992fae672f2a94b8b4e74a472f49e2 331 TIGRFAM TIGR02016 BchX: chlorophyllide reductase iron protein subunit X 34 315 2.7E-125 T 23-04-2016 IPR010246 Chlorophyllide reductase iron protein subunit X GO:0005524|GO:0015979|GO:0016628|GO:0030494|GO:0051539 KEGG: 00860+1.3.99.35|MetaCyc: PWY-5526|UniPathway: UPA00669 RPE_RS06690 28992fae672f2a94b8b4e74a472f49e2 331 Pfam PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 35 295 1.5E-97 T 23-04-2016 RPE_RS21380 cacb1af01927f166dc054fc33ae0d87b 383 SUPERFAMILY SSF48208 10 379 3.63E-72 T 23-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 RPE_RS21380 cacb1af01927f166dc054fc33ae0d87b 383 Gene3D G3DSA:1.50.10.10 5 379 2.7E-63 T 23-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 RPE_RS21380 cacb1af01927f166dc054fc33ae0d87b 383 PANTHER PTHR15108 1 377 6.4E-19 T 23-04-2016 RPE_RS21380 cacb1af01927f166dc054fc33ae0d87b 383 Pfam PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) 38 371 6.1E-51 T 23-04-2016 RPE_RS19645 c6c3b16233f4846fff24e7f10966c2ee 654 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 468 647 2.1E-35 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS19645 c6c3b16233f4846fff24e7f10966c2ee 654 SMART SM01358 34 273 1.1E-42 T 23-04-2016 IPR032255 Helical bimodular sensor domain RPE_RS19645 c6c3b16233f4846fff24e7f10966c2ee 654 PANTHER PTHR32089 372 651 1.9E-188 T 23-04-2016 RPE_RS19645 c6c3b16233f4846fff24e7f10966c2ee 654 PANTHER PTHR32089 269 338 1.9E-188 T 23-04-2016 RPE_RS19645 c6c3b16233f4846fff24e7f10966c2ee 654 Gene3D G3DSA:1.10.287.950 415 614 2.0E-46 T 23-04-2016 RPE_RS19645 c6c3b16233f4846fff24e7f10966c2ee 654 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 422 451 7.6E-5 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS19645 c6c3b16233f4846fff24e7f10966c2ee 654 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 521 550 7.6E-5 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS19645 c6c3b16233f4846fff24e7f10966c2ee 654 PANTHER PTHR32089:SF40 372 651 1.9E-188 T 23-04-2016 RPE_RS19645 c6c3b16233f4846fff24e7f10966c2ee 654 PANTHER PTHR32089:SF40 269 338 1.9E-188 T 23-04-2016 RPE_RS19645 c6c3b16233f4846fff24e7f10966c2ee 654 SUPERFAMILY SSF158472 303 350 1.19E-8 T 23-04-2016 RPE_RS19645 c6c3b16233f4846fff24e7f10966c2ee 654 SMART SM00283 394 648 9.3E-50 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS19645 c6c3b16233f4846fff24e7f10966c2ee 654 SUPERFAMILY SSF58104 400 647 1.83E-62 T 23-04-2016 RPE_RS19645 c6c3b16233f4846fff24e7f10966c2ee 654 Pfam PF00672 HAMP domain 286 347 3.0E-12 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS19645 c6c3b16233f4846fff24e7f10966c2ee 654 SMART SM00304 303 356 2.6E-9 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS04950 6ac5043d83d459666ab73708be3dab61 386 SUPERFAMILY SSF52922 274 382 2.0E-25 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RPE_RS04950 6ac5043d83d459666ab73708be3dab61 386 SUPERFAMILY SSF52518 14 267 5.89E-69 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS04950 6ac5043d83d459666ab73708be3dab61 386 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 282 375 1.7E-22 T 23-04-2016 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II RPE_RS04950 6ac5043d83d459666ab73708be3dab61 386 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 25 255 1.7E-68 T 23-04-2016 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 RPE_RS04950 6ac5043d83d459666ab73708be3dab61 386 PANTHER PTHR32154 221 386 3.8E-119 T 23-04-2016 RPE_RS04950 6ac5043d83d459666ab73708be3dab61 386 PANTHER PTHR32154 17 197 3.8E-119 T 23-04-2016 RPE_RS04950 6ac5043d83d459666ab73708be3dab61 386 Gene3D G3DSA:3.40.50.970 7 197 2.3E-80 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS04950 6ac5043d83d459666ab73708be3dab61 386 Gene3D G3DSA:3.40.50.920 274 383 1.2E-24 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RPE_RS04950 6ac5043d83d459666ab73708be3dab61 386 PANTHER PTHR32154:SF14 221 386 3.8E-119 T 23-04-2016 RPE_RS04950 6ac5043d83d459666ab73708be3dab61 386 PANTHER PTHR32154:SF14 17 197 3.8E-119 T 23-04-2016 RPE_RS11460 d5f9d5af528717a48988c1ba8d6c7643 104 Hamap MF_00580 10 kDa chaperonin [groS]. 2 95 27.393 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RPE_RS11460 d5f9d5af528717a48988c1ba8d6c7643 104 PANTHER PTHR10772 1 104 8.5E-51 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RPE_RS11460 d5f9d5af528717a48988c1ba8d6c7643 104 SMART SM00883 2 94 3.8E-61 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RPE_RS11460 d5f9d5af528717a48988c1ba8d6c7643 104 Pfam PF00166 Chaperonin 10 Kd subunit 2 94 1.6E-36 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RPE_RS11460 d5f9d5af528717a48988c1ba8d6c7643 104 SUPERFAMILY SSF50129 1 95 1.65E-36 T 23-04-2016 IPR011032 GroES-like RPE_RS11460 d5f9d5af528717a48988c1ba8d6c7643 104 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 23-04-2016 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 RPE_RS11460 d5f9d5af528717a48988c1ba8d6c7643 104 Gene3D G3DSA:2.30.33.40 1 94 4.0E-39 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RPE_RS11460 d5f9d5af528717a48988c1ba8d6c7643 104 PRINTS PR00297 10kDa chaperonin signature 3 18 2.5E-35 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RPE_RS11460 d5f9d5af528717a48988c1ba8d6c7643 104 PRINTS PR00297 10kDa chaperonin signature 60 72 2.5E-35 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RPE_RS11460 d5f9d5af528717a48988c1ba8d6c7643 104 PRINTS PR00297 10kDa chaperonin signature 25 46 2.5E-35 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RPE_RS11460 d5f9d5af528717a48988c1ba8d6c7643 104 PRINTS PR00297 10kDa chaperonin signature 81 94 2.5E-35 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RPE_RS18075 5d86cf61bf2546ff466583bcc6df9495 63 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 6 59 2.9E-17 T 23-04-2016 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 RPE_RS18075 5d86cf61bf2546ff466583bcc6df9495 63 Gene3D G3DSA:1.20.5.1030 4 60 6.5E-21 T 23-04-2016 RPE_RS18075 5d86cf61bf2546ff466583bcc6df9495 63 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 6 61 4.6E-20 T 23-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 RPE_RS18075 5d86cf61bf2546ff466583bcc6df9495 63 PANTHER PTHR33910 7 63 1.5E-19 T 23-04-2016 RPE_RS18075 5d86cf61bf2546ff466583bcc6df9495 63 Hamap MF_00422 Protein translocase subunit SecE [secE]. 4 58 11.575 T 23-04-2016 IPR022943 Preprotein translocase subunit SecE RPE_RS18075 5d86cf61bf2546ff466583bcc6df9495 63 PANTHER PTHR33910:SF1 7 63 1.5E-19 T 23-04-2016 RPE_RS18075 5d86cf61bf2546ff466583bcc6df9495 63 PRINTS PR01650 Bacterial translocase SecE signature 2 22 8.6E-5 T 23-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 RPE_RS18075 5d86cf61bf2546ff466583bcc6df9495 63 PRINTS PR01650 Bacterial translocase SecE signature 26 46 8.6E-5 T 23-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 RPE_RS18075 5d86cf61bf2546ff466583bcc6df9495 63 PRINTS PR01650 Bacterial translocase SecE signature 46 62 8.6E-5 T 23-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 RPE_RS01060 afb37e3406d3ec8dc33e682d4006715d 231 SUPERFAMILY SSF53067 1 103 1.68E-26 T 23-04-2016 RPE_RS01060 afb37e3406d3ec8dc33e682d4006715d 231 PANTHER PTHR11735:SF11 1 126 2.3E-36 T 23-04-2016 RPE_RS01060 afb37e3406d3ec8dc33e682d4006715d 231 PANTHER PTHR11735 1 126 2.3E-36 T 23-04-2016 RPE_RS01060 afb37e3406d3ec8dc33e682d4006715d 231 Pfam PF00814 Glycoprotease family 34 146 7.9E-28 T 23-04-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RPE_RS01060 afb37e3406d3ec8dc33e682d4006715d 231 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 3 212 1.8E-47 T 23-04-2016 IPR022496 tRNA threonylcarbamoyl adenosine modification protein YeaZ GO:0002949 RPE_RS01060 afb37e3406d3ec8dc33e682d4006715d 231 Gene3D G3DSA:3.30.420.40 1 137 7.4E-39 T 23-04-2016 RPE_RS16605 ad6410bf12edd098d982ceb22189e08e 79 Gene3D G3DSA:4.10.640.10 14 78 9.1E-30 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS16605 ad6410bf12edd098d982ceb22189e08e 79 PANTHER PTHR13479 11 79 2.4E-27 T 23-04-2016 RPE_RS16605 ad6410bf12edd098d982ceb22189e08e 79 PRINTS PR00974 Ribosomal protein S18 family signature 34 44 5.7E-18 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS16605 ad6410bf12edd098d982ceb22189e08e 79 PRINTS PR00974 Ribosomal protein S18 family signature 66 76 5.7E-18 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS16605 ad6410bf12edd098d982ceb22189e08e 79 PRINTS PR00974 Ribosomal protein S18 family signature 44 51 5.7E-18 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS16605 ad6410bf12edd098d982ceb22189e08e 79 PRINTS PR00974 Ribosomal protein S18 family signature 52 66 5.7E-18 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS16605 ad6410bf12edd098d982ceb22189e08e 79 SUPERFAMILY SSF46911 7 78 9.16E-27 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS16605 ad6410bf12edd098d982ceb22189e08e 79 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 8 79 21.217 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS16605 ad6410bf12edd098d982ceb22189e08e 79 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 27 77 8.0E-22 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS16605 ad6410bf12edd098d982ceb22189e08e 79 Pfam PF01084 Ribosomal protein S18 25 74 3.5E-24 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS16605 ad6410bf12edd098d982ceb22189e08e 79 TIGRFAM TIGR00165 S18: ribosomal protein bS18 10 77 5.6E-29 T 23-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS16605 ad6410bf12edd098d982ceb22189e08e 79 ProSitePatterns PS00057 Ribosomal protein S18 signature. 27 50 - T 23-04-2016 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS03020 a0243a47bf2a86a296c8bae4c7a99df4 277 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 6 263 2.7E-61 T 23-04-2016 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type RPE_RS03020 a0243a47bf2a86a296c8bae4c7a99df4 277 TIGRFAM TIGR02261 benz_CoA_red_D: benzoyl-CoA reductase, subunit D 2 263 2.4E-154 T 23-04-2016 IPR011956 Benzoyl-CoA reductase, subunit D KEGG: 00362+1.3.7.8 RPE_RS03020 a0243a47bf2a86a296c8bae4c7a99df4 277 SUPERFAMILY SSF53067 6 265 1.59E-28 T 23-04-2016 RPE_RS03020 a0243a47bf2a86a296c8bae4c7a99df4 277 TIGRFAM TIGR00241 CoA_E_activ: putative CoA-substrate-specific enzyme activase 4 261 1.8E-42 T 23-04-2016 IPR008275 CoA enzyme activase RPE_RS03020 a0243a47bf2a86a296c8bae4c7a99df4 277 Gene3D G3DSA:3.30.420.40 102 236 3.5E-32 T 23-04-2016 RPE_RS03020 a0243a47bf2a86a296c8bae4c7a99df4 277 PANTHER PTHR32329 40 263 3.7E-39 T 23-04-2016 RPE_RS00080 aed98ee722a56fd63acfd7293492cde3 244 PANTHER PTHR10422:SF23 23 163 1.3E-76 T 23-04-2016 RPE_RS00080 aed98ee722a56fd63acfd7293492cde3 244 Pfam PF02433 Cytochrome C oxidase, mono-heme subunit/FixO 7 232 1.7E-95 T 23-04-2016 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO RPE_RS00080 aed98ee722a56fd63acfd7293492cde3 244 TIGRFAM TIGR00781 ccoO: cytochrome c oxidase, cbb3-type, subunit II 7 239 5.9E-109 T 23-04-2016 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO RPE_RS00080 aed98ee722a56fd63acfd7293492cde3 244 PANTHER PTHR10422 23 163 1.3E-76 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS00080 aed98ee722a56fd63acfd7293492cde3 244 SUPERFAMILY SSF46626 21 158 3.84E-25 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS00080 aed98ee722a56fd63acfd7293492cde3 244 Gene3D G3DSA:1.10.760.10 18 229 4.6E-32 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS18595 e8209ef875c91bafe8ea84662bbd8d0b 650 Pfam PF02446 4-alpha-glucanotransferase 138 625 7.3E-115 T 23-04-2016 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 RPE_RS18595 e8209ef875c91bafe8ea84662bbd8d0b 650 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 97 629 7.2E-115 T 23-04-2016 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 RPE_RS18595 e8209ef875c91bafe8ea84662bbd8d0b 650 PANTHER PTHR32438:SF5 106 644 1.5E-150 T 23-04-2016 RPE_RS18595 e8209ef875c91bafe8ea84662bbd8d0b 650 Gene3D G3DSA:3.20.20.80 131 635 2.0E-146 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RPE_RS18595 e8209ef875c91bafe8ea84662bbd8d0b 650 PANTHER PTHR32438 106 644 1.5E-150 T 23-04-2016 RPE_RS18595 e8209ef875c91bafe8ea84662bbd8d0b 650 SUPERFAMILY SSF51445 121 646 7.81E-139 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RPE_RS22205 142697af11a366d835089d456d56b3b5 720 PRINTS PR00096 Glutamine amidotransferase superfamily signature 689 702 6.6E-11 T 23-04-2016 RPE_RS22205 142697af11a366d835089d456d56b3b5 720 PRINTS PR00096 Glutamine amidotransferase superfamily signature 572 581 6.6E-11 T 23-04-2016 RPE_RS22205 142697af11a366d835089d456d56b3b5 720 PRINTS PR00096 Glutamine amidotransferase superfamily signature 599 610 6.6E-11 T 23-04-2016 RPE_RS22205 142697af11a366d835089d456d56b3b5 720 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 528 711 2.6E-40 T 23-04-2016 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain GO:0008152 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 RPE_RS22205 142697af11a366d835089d456d56b3b5 720 Pfam PF04715 Anthranilate synthase component I, N terminal region 80 203 2.2E-7 T 23-04-2016 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058|GO:0016833 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 RPE_RS22205 142697af11a366d835089d456d56b3b5 720 PRINTS PR00097 Anthranilate synthase component II signature 689 702 6.3E-23 T 23-04-2016 RPE_RS22205 142697af11a366d835089d456d56b3b5 720 PRINTS PR00097 Anthranilate synthase component II signature 644 656 6.3E-23 T 23-04-2016 RPE_RS22205 142697af11a366d835089d456d56b3b5 720 PRINTS PR00097 Anthranilate synthase component II signature 624 632 6.3E-23 T 23-04-2016 RPE_RS22205 142697af11a366d835089d456d56b3b5 720 PRINTS PR00097 Anthranilate synthase component II signature 528 542 6.3E-23 T 23-04-2016 RPE_RS22205 142697af11a366d835089d456d56b3b5 720 PRINTS PR00097 Anthranilate synthase component II signature 572 581 6.3E-23 T 23-04-2016 RPE_RS22205 142697af11a366d835089d456d56b3b5 720 PRINTS PR00097 Anthranilate synthase component II signature 599 610 6.3E-23 T 23-04-2016 RPE_RS22205 142697af11a366d835089d456d56b3b5 720 TIGRFAM TIGR01815 TrpE-clade3: anthranilate synthase 14 712 4.3E-297 T 23-04-2016 IPR010112 Anthranilate synthase GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 RPE_RS22205 142697af11a366d835089d456d56b3b5 720 SUPERFAMILY SSF56322 34 506 1.96E-112 T 23-04-2016 IPR005801 ADC synthase GO:0009058 RPE_RS22205 142697af11a366d835089d456d56b3b5 720 PANTHER PTHR11236 33 584 2.3E-263 T 23-04-2016 RPE_RS22205 142697af11a366d835089d456d56b3b5 720 SUPERFAMILY SSF52317 524 711 1.3E-44 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RPE_RS22205 142697af11a366d835089d456d56b3b5 720 PANTHER PTHR11236:SF22 33 584 2.3E-263 T 23-04-2016 RPE_RS22205 142697af11a366d835089d456d56b3b5 720 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 569 583 8.8E-5 T 23-04-2016 RPE_RS22205 142697af11a366d835089d456d56b3b5 720 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 599 615 8.8E-5 T 23-04-2016 RPE_RS22205 142697af11a366d835089d456d56b3b5 720 Gene3D G3DSA:3.60.120.10 35 509 4.0E-110 T 23-04-2016 IPR005801 ADC synthase GO:0009058 RPE_RS22205 142697af11a366d835089d456d56b3b5 720 Gene3D G3DSA:3.40.50.880 526 712 2.6E-49 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RPE_RS22205 142697af11a366d835089d456d56b3b5 720 Pfam PF00117 Glutamine amidotransferase class-I 529 702 1.2E-37 T 23-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 RPE_RS22205 142697af11a366d835089d456d56b3b5 720 PIRSF PIRSF036934 4 715 1.3E-300 T 23-04-2016 IPR010112 Anthranilate synthase GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 RPE_RS22205 142697af11a366d835089d456d56b3b5 720 Pfam PF00425 chorismate binding enzyme 246 498 9.8E-61 T 23-04-2016 IPR015890 Chorismate-utilising enzyme, C-terminal RPE_RS06315 20d303460fe9b3cef8367378fe24fc26 463 Gene3D G3DSA:3.30.565.10 324 462 3.3E-38 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS06315 20d303460fe9b3cef8367378fe24fc26 463 SUPERFAMILY SSF55785 63 185 1.29E-15 T 23-04-2016 IPR000014 PAS domain RPE_RS06315 20d303460fe9b3cef8367378fe24fc26 463 PRINTS PR00344 Bacterial sensor protein C-terminal signature 411 421 3.6E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS06315 20d303460fe9b3cef8367378fe24fc26 463 PRINTS PR00344 Bacterial sensor protein C-terminal signature 424 442 3.6E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS06315 20d303460fe9b3cef8367378fe24fc26 463 PRINTS PR00344 Bacterial sensor protein C-terminal signature 448 461 3.6E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS06315 20d303460fe9b3cef8367378fe24fc26 463 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 407 3.6E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS06315 20d303460fe9b3cef8367378fe24fc26 463 SMART SM00091 77 143 5.7E-11 T 23-04-2016 IPR000014 PAS domain RPE_RS06315 20d303460fe9b3cef8367378fe24fc26 463 SMART SM00387 354 463 6.1E-26 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS06315 20d303460fe9b3cef8367378fe24fc26 463 Pfam PF08448 PAS fold 84 192 2.9E-9 T 23-04-2016 IPR013656 PAS fold-4 RPE_RS06315 20d303460fe9b3cef8367378fe24fc26 463 SUPERFAMILY SSF47384 214 259 7.46E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS06315 20d303460fe9b3cef8367378fe24fc26 463 SUPERFAMILY SSF55874 316 461 5.63E-39 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS06315 20d303460fe9b3cef8367378fe24fc26 463 Gene3D G3DSA:3.30.450.20 64 184 3.1E-16 T 23-04-2016 RPE_RS06315 20d303460fe9b3cef8367378fe24fc26 463 Pfam PF00512 His Kinase A (phospho-acceptor) domain 219 284 2.6E-17 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS06315 20d303460fe9b3cef8367378fe24fc26 463 Gene3D G3DSA:1.10.287.130 214 262 6.2E-5 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS06315 20d303460fe9b3cef8367378fe24fc26 463 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 74 197 1.0E-10 T 23-04-2016 IPR000014 PAS domain RPE_RS06315 20d303460fe9b3cef8367378fe24fc26 463 SMART SM00388 219 314 0.0029 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS06315 20d303460fe9b3cef8367378fe24fc26 463 PANTHER PTHR24423 278 461 1.6E-119 T 23-04-2016 RPE_RS06315 20d303460fe9b3cef8367378fe24fc26 463 PANTHER PTHR24423 24 247 1.6E-119 T 23-04-2016 RPE_RS06315 20d303460fe9b3cef8367378fe24fc26 463 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 354 462 8.4E-19 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS06315 20d303460fe9b3cef8367378fe24fc26 463 PANTHER PTHR24423:SF534 278 461 1.6E-119 T 23-04-2016 RPE_RS06315 20d303460fe9b3cef8367378fe24fc26 463 PANTHER PTHR24423:SF534 24 247 1.6E-119 T 23-04-2016 RPE_RS06950 c0c9473b3985fb625568ea050852f237 367 PANTHER PTHR24220:SF123 5 291 2.8E-94 T 23-04-2016 RPE_RS06950 c0c9473b3985fb625568ea050852f237 367 Gene3D G3DSA:3.40.50.300 4 239 2.1E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS06950 c0c9473b3985fb625568ea050852f237 367 SUPERFAMILY SSF52540 21 250 1.03E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS06950 c0c9473b3985fb625568ea050852f237 367 Pfam PF00005 ABC transporter 26 169 6.3E-22 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS06950 c0c9473b3985fb625568ea050852f237 367 SMART SM00382 35 219 1.3E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS06950 c0c9473b3985fb625568ea050852f237 367 SUPERFAMILY SSF50331 244 353 1.68E-17 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RPE_RS06950 c0c9473b3985fb625568ea050852f237 367 PANTHER PTHR24220 5 291 2.8E-94 T 23-04-2016 RPE_RS07860 19e5d54ff11799aa61693246cfdcaf81 224 PANTHER PTHR12714 1 224 1.7E-60 T 23-04-2016 RPE_RS07860 19e5d54ff11799aa61693246cfdcaf81 224 PANTHER PTHR12714:SF2 1 224 1.7E-60 T 23-04-2016 RPE_RS07860 19e5d54ff11799aa61693246cfdcaf81 224 Pfam PF04191 Phospholipid methyltransferase 110 203 2.7E-13 T 23-04-2016 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|UniPathway: UPA00753 RPE_RS20455 88141182084602b3875d4caa813dd40b 358 PANTHER PTHR40253:SF6 1 353 1.1E-116 T 23-04-2016 RPE_RS20455 88141182084602b3875d4caa813dd40b 358 PANTHER PTHR40253 1 353 1.1E-116 T 23-04-2016 RPE_RS20455 88141182084602b3875d4caa813dd40b 358 Pfam PF10098 Uncharacterised protein conserved in bacteria (DUF2336) 89 346 1.3E-58 T 23-04-2016 IPR019285 Protein of unknown function DUF2336 RPE_RS10045 37395954d50c337dd0edee98645df053 532 SMART SM00917 380 525 2.4E-36 T 23-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RPE_RS10045 37395954d50c337dd0edee98645df053 532 Pfam PF00682 HMGL-like 6 256 2.8E-45 T 23-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 RPE_RS10045 37395954d50c337dd0edee98645df053 532 Gene3D G3DSA:3.20.20.70 3 353 5.4E-115 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS10045 37395954d50c337dd0edee98645df053 532 TIGRFAM TIGR00977 citramal_synth: citramalate synthase 6 528 1.6E-186 T 23-04-2016 IPR005675 Citramalate synthase GO:0019752|GO:0046912 KEGG: 00290+2.3.1.182|KEGG: 00660+2.3.1.182|MetaCyc: PWY-5101|UniPathway: UPA00047 RPE_RS10045 37395954d50c337dd0edee98645df053 532 SUPERFAMILY SSF51569 4 298 3.11E-76 T 23-04-2016 RPE_RS10045 37395954d50c337dd0edee98645df053 532 Pfam PF08502 LeuA allosteric (dimerisation) domain 381 524 4.1E-28 T 23-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RPE_RS10045 37395954d50c337dd0edee98645df053 532 PANTHER PTHR10277:SF5 1 532 2.1E-249 T 23-04-2016 IPR005675 Citramalate synthase GO:0019752|GO:0046912 KEGG: 00290+2.3.1.182|KEGG: 00660+2.3.1.182|MetaCyc: PWY-5101|UniPathway: UPA00047 RPE_RS10045 37395954d50c337dd0edee98645df053 532 SUPERFAMILY SSF110921 422 521 6.54E-20 T 23-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RPE_RS10045 37395954d50c337dd0edee98645df053 532 PANTHER PTHR10277 1 532 2.1E-249 T 23-04-2016 RPE_RS10045 37395954d50c337dd0edee98645df053 532 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 13 29 - T 23-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RPE_RS05390 460609fc0b7269be7c8e3d88cf5aebcc 640 PANTHER PTHR11624:SF20 23 217 0.0 T 23-04-2016 RPE_RS05390 460609fc0b7269be7c8e3d88cf5aebcc 640 ProSitePatterns PS00801 Transketolase signature 1. 35 54 - T 23-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RPE_RS05390 460609fc0b7269be7c8e3d88cf5aebcc 640 SUPERFAMILY SSF52518 7 352 3.04E-78 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS05390 460609fc0b7269be7c8e3d88cf5aebcc 640 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 12 629 2.1E-246 T 23-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RPE_RS05390 460609fc0b7269be7c8e3d88cf5aebcc 640 PANTHER PTHR11624 23 217 0.0 T 23-04-2016 IPR033247 Transketolase family RPE_RS05390 460609fc0b7269be7c8e3d88cf5aebcc 640 Gene3D G3DSA:3.40.50.970 24 200 2.3E-76 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS05390 460609fc0b7269be7c8e3d88cf5aebcc 640 Gene3D G3DSA:3.40.50.970 243 336 2.3E-76 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS05390 460609fc0b7269be7c8e3d88cf5aebcc 640 SMART SM00861 321 486 2.1E-63 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RPE_RS05390 460609fc0b7269be7c8e3d88cf5aebcc 640 ProSitePatterns PS00802 Transketolase signature 2. 427 443 - T 23-04-2016 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RPE_RS05390 460609fc0b7269be7c8e3d88cf5aebcc 640 SUPERFAMILY SSF52922 493 629 1.44E-36 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RPE_RS05390 460609fc0b7269be7c8e3d88cf5aebcc 640 PANTHER PTHR11624:SF20 242 640 0.0 T 23-04-2016 RPE_RS05390 460609fc0b7269be7c8e3d88cf5aebcc 640 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 9 630 44.743 T 23-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RPE_RS05390 460609fc0b7269be7c8e3d88cf5aebcc 640 Gene3D G3DSA:3.40.50.920 499 629 2.4E-39 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RPE_RS05390 460609fc0b7269be7c8e3d88cf5aebcc 640 SUPERFAMILY SSF52518 298 482 1.85E-59 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS05390 460609fc0b7269be7c8e3d88cf5aebcc 640 Pfam PF02780 Transketolase, C-terminal domain 498 621 3.7E-29 T 23-04-2016 IPR033248 Transketolase, C-terminal domain RPE_RS05390 460609fc0b7269be7c8e3d88cf5aebcc 640 PANTHER PTHR11624 242 640 0.0 T 23-04-2016 IPR033247 Transketolase family RPE_RS05390 460609fc0b7269be7c8e3d88cf5aebcc 640 Pfam PF02779 Transketolase, pyrimidine binding domain 321 483 7.4E-38 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RPE_RS05390 460609fc0b7269be7c8e3d88cf5aebcc 640 Gene3D G3DSA:3.40.50.970 337 498 1.7E-35 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS05390 460609fc0b7269be7c8e3d88cf5aebcc 640 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 10 284 1.8E-117 T 23-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RPE_RS16360 098118b5b85284719521eb77681a1982 434 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 414 431 3.3E-26 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RPE_RS16360 098118b5b85284719521eb77681a1982 434 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 303 315 3.3E-26 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RPE_RS16360 098118b5b85284719521eb77681a1982 434 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 235 245 3.3E-26 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RPE_RS16360 098118b5b85284719521eb77681a1982 434 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 206 220 3.3E-26 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RPE_RS16360 098118b5b85284719521eb77681a1982 434 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 353 369 3.3E-26 T 23-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RPE_RS16360 098118b5b85284719521eb77681a1982 434 SUPERFAMILY SSF53335 121 431 3.72E-64 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS16360 098118b5b85284719521eb77681a1982 434 PANTHER PTHR22807 116 431 3.9E-159 T 23-04-2016 RPE_RS16360 098118b5b85284719521eb77681a1982 434 Gene3D G3DSA:3.30.70.1170 154 214 4.4E-9 T 23-04-2016 RPE_RS16360 098118b5b85284719521eb77681a1982 434 Pfam PF01189 16S rRNA methyltransferase RsmB/F 228 430 1.3E-39 T 23-04-2016 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RPE_RS16360 098118b5b85284719521eb77681a1982 434 Gene3D G3DSA:3.40.50.150 216 431 3.6E-50 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS16360 098118b5b85284719521eb77681a1982 434 PANTHER PTHR22807:SF33 116 431 3.9E-159 T 23-04-2016 RPE_RS16815 f34a7e56711bfb63aebecbf0e5716c30 494 SUPERFAMILY SSF55931 19 310 1.57E-113 T 23-04-2016 RPE_RS16815 f34a7e56711bfb63aebecbf0e5716c30 494 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 17 493 36.76 T 23-04-2016 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 RPE_RS16815 f34a7e56711bfb63aebecbf0e5716c30 494 Pfam PF02637 GatB domain 343 492 3.2E-46 T 23-04-2016 IPR018027 Asn/Gln amidotransferase GO:0016884 RPE_RS16815 f34a7e56711bfb63aebecbf0e5716c30 494 SMART SM00845 342 492 6.9E-71 T 23-04-2016 IPR018027 Asn/Gln amidotransferase GO:0016884 RPE_RS16815 f34a7e56711bfb63aebecbf0e5716c30 494 PANTHER PTHR11659:SF0 17 492 6.4E-250 T 23-04-2016 RPE_RS16815 f34a7e56711bfb63aebecbf0e5716c30 494 PANTHER PTHR11659 17 492 6.4E-250 T 23-04-2016 IPR017959 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E GO:0016884 RPE_RS16815 f34a7e56711bfb63aebecbf0e5716c30 494 SUPERFAMILY SSF89095 311 421 1.2E-32 T 23-04-2016 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 RPE_RS16815 f34a7e56711bfb63aebecbf0e5716c30 494 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 159 173 - T 23-04-2016 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 RPE_RS16815 f34a7e56711bfb63aebecbf0e5716c30 494 Pfam PF02934 GatB/GatE catalytic domain 20 302 1.5E-111 T 23-04-2016 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 RPE_RS16815 f34a7e56711bfb63aebecbf0e5716c30 494 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 17 492 3.4E-161 T 23-04-2016 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 RPE_RS23775 cf9bb1b31ee7b51f72ca65d0819e62b8 453 TIGRFAM TIGR00260 thrC: threonine synthase 48 407 1.9E-83 T 23-04-2016 IPR004450 Threonine synthase-like RPE_RS23775 cf9bb1b31ee7b51f72ca65d0819e62b8 453 Gene3D G3DSA:3.90.1380.10 2 67 2.9E-18 T 23-04-2016 IPR029144 Threonine synthase, N-terminal RPE_RS23775 cf9bb1b31ee7b51f72ca65d0819e62b8 453 SUPERFAMILY SSF53686 2 443 2.72E-149 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RPE_RS23775 cf9bb1b31ee7b51f72ca65d0819e62b8 453 Gene3D G3DSA:3.40.50.1100 185 416 4.3E-91 T 23-04-2016 RPE_RS23775 cf9bb1b31ee7b51f72ca65d0819e62b8 453 PANTHER PTHR10314:SF1 35 311 4.1E-151 T 23-04-2016 RPE_RS23775 cf9bb1b31ee7b51f72ca65d0819e62b8 453 PANTHER PTHR10314:SF1 7 18 4.1E-151 T 23-04-2016 RPE_RS23775 cf9bb1b31ee7b51f72ca65d0819e62b8 453 PANTHER PTHR10314:SF1 343 449 4.1E-151 T 23-04-2016 RPE_RS23775 cf9bb1b31ee7b51f72ca65d0819e62b8 453 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 84 382 2.3E-18 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RPE_RS23775 cf9bb1b31ee7b51f72ca65d0819e62b8 453 Gene3D G3DSA:3.40.50.1100 93 184 1.9E-10 T 23-04-2016 RPE_RS23775 cf9bb1b31ee7b51f72ca65d0819e62b8 453 PANTHER PTHR10314 35 311 4.1E-151 T 23-04-2016 RPE_RS23775 cf9bb1b31ee7b51f72ca65d0819e62b8 453 PANTHER PTHR10314 7 18 4.1E-151 T 23-04-2016 RPE_RS23775 cf9bb1b31ee7b51f72ca65d0819e62b8 453 PANTHER PTHR10314 343 449 4.1E-151 T 23-04-2016 RPE_RS23775 cf9bb1b31ee7b51f72ca65d0819e62b8 453 Pfam PF14821 Threonine synthase N terminus 1 62 1.6E-17 T 23-04-2016 IPR029144 Threonine synthase, N-terminal RPE_RS01030 155bb4cf9e16c6490a8a325bfd0577d2 172 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 10 158 23.062 T 23-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 RPE_RS01030 155bb4cf9e16c6490a8a325bfd0577d2 172 Gene3D G3DSA:3.40.390.30 17 166 1.2E-45 T 23-04-2016 IPR023091 Metalloprotease catalytic domain, predicted GO:0004222 RPE_RS01030 155bb4cf9e16c6490a8a325bfd0577d2 172 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 46 155 5.2E-35 T 23-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 RPE_RS01030 155bb4cf9e16c6490a8a325bfd0577d2 172 Pfam PF02130 Uncharacterized protein family UPF0054 22 154 1.6E-36 T 23-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 RPE_RS01030 155bb4cf9e16c6490a8a325bfd0577d2 172 PANTHER PTHR22881 1 163 1.6E-50 T 23-04-2016 RPE_RS01030 155bb4cf9e16c6490a8a325bfd0577d2 172 SUPERFAMILY SSF55486 14 165 8.3E-42 T 23-04-2016 RPE_RS01030 155bb4cf9e16c6490a8a325bfd0577d2 172 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 124 134 - T 23-04-2016 IPR020549 Endoribonuclease YbeY, conserved site RPE_RS19290 518b721144d0e541e5d13c494c5496fc 258 Gene3D G3DSA:1.10.3720.10 50 239 9.6E-13 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS19290 518b721144d0e541e5d13c494c5496fc 258 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 77 238 1.1E-12 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS19290 518b721144d0e541e5d13c494c5496fc 258 PANTHER PTHR30151 10 258 7.2E-37 T 23-04-2016 RPE_RS19290 518b721144d0e541e5d13c494c5496fc 258 SUPERFAMILY SSF161098 52 235 8.63E-16 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS15035 094bb13e79810a21945930a38f5505c3 606 PANTHER PTHR11918 72 395 2.5E-31 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein RPE_RS15035 094bb13e79810a21945930a38f5505c3 606 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 209 229 - T 23-04-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 RPE_RS15035 094bb13e79810a21945930a38f5505c3 606 SUPERFAMILY SSF102114 161 413 9.42E-34 T 23-04-2016 RPE_RS15035 094bb13e79810a21945930a38f5505c3 606 SMART SM00729 205 418 2.5E-25 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RPE_RS15035 094bb13e79810a21945930a38f5505c3 606 Gene3D G3DSA:3.80.30.20 208 400 3.6E-34 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RPE_RS15035 094bb13e79810a21945930a38f5505c3 606 Pfam PF04055 Radical SAM superfamily 212 372 2.1E-20 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RPE_RS13010 719a62a3c5d92683c7fbaaa4c091533c 130 PANTHER PTHR34182 2 126 1.4E-23 T 23-04-2016 RPE_RS13010 719a62a3c5d92683c7fbaaa4c091533c 130 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 2 73 1.4E-19 T 23-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RPE_RS13010 719a62a3c5d92683c7fbaaa4c091533c 130 Pfam PF03840 Preprotein translocase SecG subunit 4 72 7.7E-16 T 23-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RPE_RS13010 719a62a3c5d92683c7fbaaa4c091533c 130 PRINTS PR01651 Protein-export SecG membrane protein signature 54 76 9.4E-22 T 23-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RPE_RS13010 719a62a3c5d92683c7fbaaa4c091533c 130 PRINTS PR01651 Protein-export SecG membrane protein signature 38 54 9.4E-22 T 23-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RPE_RS13010 719a62a3c5d92683c7fbaaa4c091533c 130 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 9.4E-22 T 23-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RPE_RS13010 719a62a3c5d92683c7fbaaa4c091533c 130 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 9.4E-22 T 23-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RPE_RS12100 a7b3fe52d59609799d7f0ec7a7da0a84 253 PANTHER PTHR31126 112 253 2.8E-66 T 23-04-2016 RPE_RS12100 a7b3fe52d59609799d7f0ec7a7da0a84 253 PANTHER PTHR31126 1 87 2.8E-66 T 23-04-2016 RPE_RS12100 a7b3fe52d59609799d7f0ec7a7da0a84 253 PANTHER PTHR31126:SF21 112 253 2.8E-66 T 23-04-2016 RPE_RS12100 a7b3fe52d59609799d7f0ec7a7da0a84 253 PANTHER PTHR31126:SF21 1 87 2.8E-66 T 23-04-2016 RPE_RS12100 a7b3fe52d59609799d7f0ec7a7da0a84 253 SUPERFAMILY SSF52799 10 248 1.98E-51 T 23-04-2016 IPR029021 Protein-tyrosine phosphatase-like RPE_RS12100 a7b3fe52d59609799d7f0ec7a7da0a84 253 Gene3D G3DSA:3.90.190.10 12 180 4.3E-20 T 23-04-2016 IPR029021 Protein-tyrosine phosphatase-like RPE_RS12100 a7b3fe52d59609799d7f0ec7a7da0a84 253 ProSitePatterns PS00383 Tyrosine specific protein phosphatases active site. 145 155 - T 23-04-2016 IPR016130 Protein-tyrosine phosphatase, active site GO:0004725|GO:0016311|GO:0016791 RPE_RS12100 a7b3fe52d59609799d7f0ec7a7da0a84 253 Pfam PF13350 Tyrosine phosphatase family 10 249 3.6E-67 T 23-04-2016 IPR026893 Tyrosine/serine-protein phosphatase IphP-type RPE_RS24545 3270fbf99f4c49df050d5e717f14b14d 516 Gene3D G3DSA:3.40.50.980 167 329 5.2E-38 T 23-04-2016 RPE_RS24545 3270fbf99f4c49df050d5e717f14b14d 516 Gene3D G3DSA:3.30.300.30 406 508 4.0E-26 T 23-04-2016 RPE_RS24545 3270fbf99f4c49df050d5e717f14b14d 516 ProSitePatterns PS00455 Putative AMP-binding domain signature. 159 170 - T 23-04-2016 IPR020845 AMP-binding, conserved site RPE_RS24545 3270fbf99f4c49df050d5e717f14b14d 516 SUPERFAMILY SSF56801 5 509 6.28E-123 T 23-04-2016 RPE_RS24545 3270fbf99f4c49df050d5e717f14b14d 516 PANTHER PTHR24096:SF106 10 516 3.2E-271 T 23-04-2016 RPE_RS24545 3270fbf99f4c49df050d5e717f14b14d 516 Gene3D G3DSA:2.30.38.10 330 401 1.6E-13 T 23-04-2016 RPE_RS24545 3270fbf99f4c49df050d5e717f14b14d 516 PANTHER PTHR24096 10 516 3.2E-271 T 23-04-2016 RPE_RS24545 3270fbf99f4c49df050d5e717f14b14d 516 Pfam PF13193 AMP-binding enzyme C-terminal domain 419 497 1.9E-15 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RPE_RS24545 3270fbf99f4c49df050d5e717f14b14d 516 Gene3D G3DSA:3.40.50.980 4 166 8.6E-30 T 23-04-2016 RPE_RS24545 3270fbf99f4c49df050d5e717f14b14d 516 Pfam PF00501 AMP-binding enzyme 6 410 4.0E-74 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS00115 c771678999d3bcee591d9f52498aaa86 570 SUPERFAMILY SSF56235 34 567 1.23E-180 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RPE_RS00115 c771678999d3bcee591d9f52498aaa86 570 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 63 88 3.6E-74 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RPE_RS00115 c771678999d3bcee591d9f52498aaa86 570 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 285 304 3.6E-74 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RPE_RS00115 c771678999d3bcee591d9f52498aaa86 570 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 406 424 3.6E-74 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RPE_RS00115 c771678999d3bcee591d9f52498aaa86 570 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 136 154 3.6E-74 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RPE_RS00115 c771678999d3bcee591d9f52498aaa86 570 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 255 271 3.6E-74 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RPE_RS00115 c771678999d3bcee591d9f52498aaa86 570 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 156 175 3.6E-74 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RPE_RS00115 c771678999d3bcee591d9f52498aaa86 570 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 447 462 3.6E-74 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RPE_RS00115 c771678999d3bcee591d9f52498aaa86 570 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 382 400 3.6E-74 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RPE_RS00115 c771678999d3bcee591d9f52498aaa86 570 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 471 488 3.6E-74 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RPE_RS00115 c771678999d3bcee591d9f52498aaa86 570 PANTHER PTHR11686 1 568 5.2E-208 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RPE_RS00115 c771678999d3bcee591d9f52498aaa86 570 PANTHER PTHR11686:SF9 1 568 5.2E-208 T 23-04-2016 RPE_RS00115 c771678999d3bcee591d9f52498aaa86 570 ProSitePatterns PS00462 Gamma-glutamyltranspeptidase signature. 382 406 - T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RPE_RS00115 c771678999d3bcee591d9f52498aaa86 570 Pfam PF01019 Gamma-glutamyltranspeptidase 56 564 6.3E-174 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RPE_RS00115 c771678999d3bcee591d9f52498aaa86 570 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 41 561 2.9E-172 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RPE_RS12740 2d4b710fb3f5c356beed2d9cbaab3d6e 134 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 118 2.0E-18 T 23-04-2016 RPE_RS12740 2d4b710fb3f5c356beed2d9cbaab3d6e 134 PANTHER PTHR21366 1 133 4.7E-58 T 23-04-2016 RPE_RS12740 2d4b710fb3f5c356beed2d9cbaab3d6e 134 TIGRFAM TIGR03081 metmalonyl_epim: methylmalonyl-CoA epimerase 4 133 1.6E-46 T 23-04-2016 IPR017515 Methylmalonyl-CoA epimerase KEGG: 00280+5.1.99.1|KEGG: 00630+5.1.99.1|KEGG: 00640+5.1.99.1|KEGG: 00720+5.1.99.1|MetaCyc: PWY-5741|MetaCyc: PWY-5743|MetaCyc: PWY-5789|MetaCyc: PWY-6728|MetaCyc: PWY-7384 RPE_RS12740 2d4b710fb3f5c356beed2d9cbaab3d6e 134 Gene3D G3DSA:3.10.180.10 1 133 1.3E-41 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RPE_RS12740 2d4b710fb3f5c356beed2d9cbaab3d6e 134 SUPERFAMILY SSF54593 1 133 4.43E-32 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RPE_RS12740 2d4b710fb3f5c356beed2d9cbaab3d6e 134 PANTHER PTHR21366:SF9 1 133 4.7E-58 T 23-04-2016 RPE_RS08160 c40a53788ab5d79d325004a2ba40d061 181 SMART SM00506 10 139 2.4E-44 T 23-04-2016 IPR002589 Macro domain RPE_RS08160 c40a53788ab5d79d325004a2ba40d061 181 SUPERFAMILY SSF52949 4 174 3.53E-59 T 23-04-2016 RPE_RS08160 c40a53788ab5d79d325004a2ba40d061 181 Gene3D G3DSA:3.40.220.10 10 174 5.9E-64 T 23-04-2016 RPE_RS08160 c40a53788ab5d79d325004a2ba40d061 181 PANTHER PTHR11106 10 173 1.4E-77 T 23-04-2016 RPE_RS08160 c40a53788ab5d79d325004a2ba40d061 181 Pfam PF01661 Macro domain 27 139 1.7E-40 T 23-04-2016 IPR002589 Macro domain RPE_RS18830 9f539ffbf238c814ac9de4770ad92c49 369 SUPERFAMILY SSF161098 135 349 2.75E-13 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS18830 9f539ffbf238c814ac9de4770ad92c49 369 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 155 362 3.3E-35 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS18830 9f539ffbf238c814ac9de4770ad92c49 369 Gene3D G3DSA:1.10.3720.10 132 360 4.0E-18 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS18830 9f539ffbf238c814ac9de4770ad92c49 369 PANTHER PTHR30465:SF66 73 364 3.9E-203 T 23-04-2016 RPE_RS18830 9f539ffbf238c814ac9de4770ad92c49 369 PANTHER PTHR30465:SF66 1 45 3.9E-203 T 23-04-2016 RPE_RS18830 9f539ffbf238c814ac9de4770ad92c49 369 PANTHER PTHR30465 73 364 3.9E-203 T 23-04-2016 RPE_RS18830 9f539ffbf238c814ac9de4770ad92c49 369 PANTHER PTHR30465 1 45 3.9E-203 T 23-04-2016 RPE_RS04925 a22d5bec3bba2251447823be75b3cce1 396 PRINTS PR00096 Glutamine amidotransferase superfamily signature 365 378 9.8E-12 T 23-04-2016 RPE_RS04925 a22d5bec3bba2251447823be75b3cce1 396 PRINTS PR00096 Glutamine amidotransferase superfamily signature 280 291 9.8E-12 T 23-04-2016 RPE_RS04925 a22d5bec3bba2251447823be75b3cce1 396 PRINTS PR00096 Glutamine amidotransferase superfamily signature 251 260 9.8E-12 T 23-04-2016 RPE_RS04925 a22d5bec3bba2251447823be75b3cce1 396 PANTHER PTHR11405 15 394 2.7E-198 T 23-04-2016 RPE_RS04925 a22d5bec3bba2251447823be75b3cce1 396 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 17 391 6.2E-130 T 23-04-2016 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RPE_RS04925 a22d5bec3bba2251447823be75b3cce1 396 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 248 262 1.6E-36 T 23-04-2016 RPE_RS04925 a22d5bec3bba2251447823be75b3cce1 396 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 297 314 1.6E-36 T 23-04-2016 RPE_RS04925 a22d5bec3bba2251447823be75b3cce1 396 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 322 333 1.6E-36 T 23-04-2016 RPE_RS04925 a22d5bec3bba2251447823be75b3cce1 396 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 280 296 1.6E-36 T 23-04-2016 RPE_RS04925 a22d5bec3bba2251447823be75b3cce1 396 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 209 223 1.6E-36 T 23-04-2016 RPE_RS04925 a22d5bec3bba2251447823be75b3cce1 396 SUPERFAMILY SSF52317 186 393 1.24E-59 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RPE_RS04925 a22d5bec3bba2251447823be75b3cce1 396 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 15 394 46.626 T 23-04-2016 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RPE_RS04925 a22d5bec3bba2251447823be75b3cce1 396 SMART SM01097 15 149 7.6E-80 T 23-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RPE_RS04925 a22d5bec3bba2251447823be75b3cce1 396 Gene3D G3DSA:3.50.30.20 17 163 5.0E-53 T 23-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RPE_RS04925 a22d5bec3bba2251447823be75b3cce1 396 PRINTS PR00097 Anthranilate synthase component II signature 251 260 4.4E-6 T 23-04-2016 RPE_RS04925 a22d5bec3bba2251447823be75b3cce1 396 PRINTS PR00097 Anthranilate synthase component II signature 365 378 4.4E-6 T 23-04-2016 RPE_RS04925 a22d5bec3bba2251447823be75b3cce1 396 PRINTS PR00097 Anthranilate synthase component II signature 280 291 4.4E-6 T 23-04-2016 RPE_RS04925 a22d5bec3bba2251447823be75b3cce1 396 Pfam PF00117 Glutamine amidotransferase class-I 211 387 1.9E-44 T 23-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 RPE_RS04925 a22d5bec3bba2251447823be75b3cce1 396 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 17 147 9.5E-47 T 23-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RPE_RS04925 a22d5bec3bba2251447823be75b3cce1 396 SUPERFAMILY SSF52021 16 165 1.44E-50 T 23-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 RPE_RS04925 a22d5bec3bba2251447823be75b3cce1 396 Gene3D G3DSA:3.40.50.880 172 392 4.3E-75 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RPE_RS15950 c08f2ff3105b409bad8a6536874c6342 221 Gene3D G3DSA:1.10.3720.10 9 216 1.3E-41 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS15950 c08f2ff3105b409bad8a6536874c6342 221 PANTHER PTHR30450:SF1 1 221 6.2E-106 T 23-04-2016 RPE_RS15950 c08f2ff3105b409bad8a6536874c6342 221 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 31 220 1.0E-25 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS15950 c08f2ff3105b409bad8a6536874c6342 221 SUPERFAMILY SSF161098 9 220 3.01E-46 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS15950 c08f2ff3105b409bad8a6536874c6342 221 PANTHER PTHR30450 1 221 6.2E-106 T 23-04-2016 RPE_RS18965 48411d98abacc9f9c4a56aab71fcae52 562 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 1 26 8.3E-21 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS18965 48411d98abacc9f9c4a56aab71fcae52 562 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 477 506 8.3E-21 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS18965 48411d98abacc9f9c4a56aab71fcae52 562 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 429 458 8.3E-21 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS18965 48411d98abacc9f9c4a56aab71fcae52 562 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 400 427 8.3E-21 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS18965 48411d98abacc9f9c4a56aab71fcae52 562 PANTHER PTHR32089:SF40 280 559 4.7E-173 T 23-04-2016 RPE_RS18965 48411d98abacc9f9c4a56aab71fcae52 562 PANTHER PTHR32089:SF40 191 247 4.7E-173 T 23-04-2016 RPE_RS18965 48411d98abacc9f9c4a56aab71fcae52 562 SMART SM00304 430 487 69.0 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS18965 48411d98abacc9f9c4a56aab71fcae52 562 SMART SM00304 212 265 7.0E-9 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS18965 48411d98abacc9f9c4a56aab71fcae52 562 PANTHER PTHR32089 280 559 4.7E-173 T 23-04-2016 RPE_RS18965 48411d98abacc9f9c4a56aab71fcae52 562 PANTHER PTHR32089 191 247 4.7E-173 T 23-04-2016 RPE_RS18965 48411d98abacc9f9c4a56aab71fcae52 562 SMART SM00283 298 556 1.0E-47 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS18965 48411d98abacc9f9c4a56aab71fcae52 562 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 366 555 5.4E-35 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS18965 48411d98abacc9f9c4a56aab71fcae52 562 SUPERFAMILY SSF58104 308 555 1.44E-63 T 23-04-2016 RPE_RS18965 48411d98abacc9f9c4a56aab71fcae52 562 SUPERFAMILY SSF58104 240 267 1.44E-63 T 23-04-2016 RPE_RS18965 48411d98abacc9f9c4a56aab71fcae52 562 Pfam PF00672 HAMP domain 193 257 6.3E-10 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS18965 48411d98abacc9f9c4a56aab71fcae52 562 Gene3D G3DSA:1.10.287.950 319 524 2.6E-48 T 23-04-2016 RPE_RS02490 799b3c07959da48163a8a52b02adaf8f 119 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 27.495 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RPE_RS02490 799b3c07959da48163a8a52b02adaf8f 119 PRINTS PR00062 Ribosomal protein L20 signature 42 71 2.8E-33 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RPE_RS02490 799b3c07959da48163a8a52b02adaf8f 119 PRINTS PR00062 Ribosomal protein L20 signature 12 41 2.8E-33 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RPE_RS02490 799b3c07959da48163a8a52b02adaf8f 119 PRINTS PR00062 Ribosomal protein L20 signature 75 101 2.8E-33 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RPE_RS02490 799b3c07959da48163a8a52b02adaf8f 119 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RPE_RS02490 799b3c07959da48163a8a52b02adaf8f 119 Gene3D G3DSA:1.10.1900.20 55 117 1.2E-28 T 23-04-2016 RPE_RS02490 799b3c07959da48163a8a52b02adaf8f 119 Pfam PF00453 Ribosomal protein L20 3 109 9.9E-46 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RPE_RS02490 799b3c07959da48163a8a52b02adaf8f 119 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 23 70 1.0E-16 T 23-04-2016 RPE_RS02490 799b3c07959da48163a8a52b02adaf8f 119 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 1.3E-44 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RPE_RS02490 799b3c07959da48163a8a52b02adaf8f 119 PANTHER PTHR10986 2 117 6.5E-59 T 23-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RPE_RS02490 799b3c07959da48163a8a52b02adaf8f 119 SUPERFAMILY SSF74731 3 117 9.03E-47 T 23-04-2016 RPE_RS11760 3abc9210c0ab64166f514099784c837b 109 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 18 86 20.007 T 23-04-2016 IPR002696 Putative membrane protein insertion efficiency factor RPE_RS11760 3abc9210c0ab64166f514099784c837b 109 SMART SM01234 18 85 4.0E-30 T 23-04-2016 IPR002696 Putative membrane protein insertion efficiency factor RPE_RS11760 3abc9210c0ab64166f514099784c837b 109 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 33 85 5.0E-25 T 23-04-2016 IPR002696 Putative membrane protein insertion efficiency factor RPE_RS11760 3abc9210c0ab64166f514099784c837b 109 Pfam PF01809 Haemolytic domain 24 85 2.3E-23 T 23-04-2016 IPR002696 Putative membrane protein insertion efficiency factor RPE_RS11760 3abc9210c0ab64166f514099784c837b 109 PANTHER PTHR33383 14 109 2.3E-30 T 23-04-2016 RPE_RS11760 3abc9210c0ab64166f514099784c837b 109 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 26 88 5.5E-19 T 23-04-2016 IPR002696 Putative membrane protein insertion efficiency factor RPE_RS06880 2dcea3c8fdf551aa4e6ce86c8fbeed30 707 SUPERFAMILY SSF50993 11 433 4.71E-99 T 23-04-2016 RPE_RS06880 2dcea3c8fdf551aa4e6ce86c8fbeed30 707 Pfam PF00326 Prolyl oligopeptidase family 486 699 2.2E-62 T 23-04-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 RPE_RS06880 2dcea3c8fdf551aa4e6ce86c8fbeed30 707 PANTHER PTHR11757 16 707 7.6E-300 T 23-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RPE_RS06880 2dcea3c8fdf551aa4e6ce86c8fbeed30 707 Gene3D G3DSA:3.40.50.1820 437 679 1.2E-29 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS06880 2dcea3c8fdf551aa4e6ce86c8fbeed30 707 SUPERFAMILY SSF53474 434 680 1.49E-40 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS06880 2dcea3c8fdf551aa4e6ce86c8fbeed30 707 PANTHER PTHR11757:SF3 16 707 7.6E-300 T 23-04-2016 RPE_RS06880 2dcea3c8fdf551aa4e6ce86c8fbeed30 707 Gene3D G3DSA:2.130.10.120 94 429 4.7E-103 T 23-04-2016 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 RPE_RS06880 2dcea3c8fdf551aa4e6ce86c8fbeed30 707 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 523 542 9.0E-41 T 23-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RPE_RS06880 2dcea3c8fdf551aa4e6ce86c8fbeed30 707 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 553 573 9.0E-41 T 23-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RPE_RS06880 2dcea3c8fdf551aa4e6ce86c8fbeed30 707 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 495 519 9.0E-41 T 23-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RPE_RS06880 2dcea3c8fdf551aa4e6ce86c8fbeed30 707 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 612 627 9.0E-41 T 23-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RPE_RS06880 2dcea3c8fdf551aa4e6ce86c8fbeed30 707 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 469 487 9.0E-41 T 23-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RPE_RS06880 2dcea3c8fdf551aa4e6ce86c8fbeed30 707 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 630 652 9.0E-41 T 23-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RPE_RS06880 2dcea3c8fdf551aa4e6ce86c8fbeed30 707 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 16 423 1.9E-94 T 23-04-2016 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 RPE_RS04385 158b7e814140009496b5fa47839b7c6b 325 Gene3D G3DSA:3.40.190.10 137 198 1.8E-23 T 23-04-2016 RPE_RS04385 158b7e814140009496b5fa47839b7c6b 325 Hamap MF_00079 ATP phosphoribosyltransferase [hisG]. 4 310 25.978 T 23-04-2016 IPR020621 ATP phosphoribosyltransferase HisG, long form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 RPE_RS04385 158b7e814140009496b5fa47839b7c6b 325 Gene3D G3DSA:3.40.190.10 6 136 2.3E-25 T 23-04-2016 RPE_RS04385 158b7e814140009496b5fa47839b7c6b 325 Pfam PF01634 ATP phosphoribosyltransferase 56 225 1.9E-36 T 23-04-2016 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 RPE_RS04385 158b7e814140009496b5fa47839b7c6b 325 SUPERFAMILY SSF53850 5 222 8.93E-49 T 23-04-2016 RPE_RS04385 158b7e814140009496b5fa47839b7c6b 325 PANTHER PTHR21403:SF0 7 311 3.9E-86 T 23-04-2016 RPE_RS04385 158b7e814140009496b5fa47839b7c6b 325 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 166 187 - T 23-04-2016 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 RPE_RS04385 158b7e814140009496b5fa47839b7c6b 325 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 7 209 1.0E-51 T 23-04-2016 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 RPE_RS04385 158b7e814140009496b5fa47839b7c6b 325 PANTHER PTHR21403 7 311 3.9E-86 T 23-04-2016 IPR001348 ATP phosphoribosyltransferase HisG GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 RPE_RS04045 12945185dbde7b2db4e35034d2588e4a 324 Pfam PF00561 alpha/beta hydrolase fold 62 300 2.8E-7 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS04045 12945185dbde7b2db4e35034d2588e4a 324 Gene3D G3DSA:3.40.50.1820 60 176 5.1E-22 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS04045 12945185dbde7b2db4e35034d2588e4a 324 Gene3D G3DSA:3.40.50.1820 251 320 5.1E-22 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS04045 12945185dbde7b2db4e35034d2588e4a 324 PANTHER PTHR10794 10 323 9.7E-50 T 23-04-2016 RPE_RS04045 12945185dbde7b2db4e35034d2588e4a 324 SUPERFAMILY SSF53474 35 319 1.29E-32 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS04045 12945185dbde7b2db4e35034d2588e4a 324 PIRSF PIRSF005211 1 324 8.0E-94 T 23-04-2016 IPR012020 AB hydrolase 4 family KEGG: 00051+3.1.1.-|KEGG: 00053+3.1.1.-|KEGG: 00363+3.1.1.-|KEGG: 00365+3.1.1.-|KEGG: 00534+3.1.1.-|KEGG: 00564+3.1.1.-|KEGG: 00623+3.1.1.-|KEGG: 00640+3.1.1.-|KEGG: 00830+3.1.1.-|KEGG: 00900+3.1.1.-|KEGG: 00940+3.1.1.-|KEGG: 00960+3.1.1.- RPE_RS01695 24d1d11172e6a59cd8fce5c0df04d258 148 Gene3D G3DSA:3.40.390.10 97 124 6.4E-5 T 23-04-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 RPE_RS01695 24d1d11172e6a59cd8fce5c0df04d258 148 Pfam PF06262 Zinicin-like metallopeptidase 32 127 9.1E-35 T 23-04-2016 IPR010428 Zinicin-like metallopeptidase RPE_RS01695 24d1d11172e6a59cd8fce5c0df04d258 148 PANTHER PTHR41522 1 133 1.9E-38 T 23-04-2016 RPE_RS01695 24d1d11172e6a59cd8fce5c0df04d258 148 SUPERFAMILY SSF55486 8 127 3.31E-34 T 23-04-2016 RPE_RS19700 0041b95140cb2bdb7abbade30f6d2835 91 PANTHER PTHR33677:SF3 1 91 8.4E-30 T 23-04-2016 RPE_RS19700 0041b95140cb2bdb7abbade30f6d2835 91 PANTHER PTHR33677 1 91 8.4E-30 T 23-04-2016 RPE_RS19700 0041b95140cb2bdb7abbade30f6d2835 91 Pfam PF02583 Metal-sensitive transcriptional repressor 7 87 5.6E-30 T 23-04-2016 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 RPE_RS23650 a7c95039b7e6cab9845c627165dccbbe 123 PANTHER PTHR35174 2 113 1.0E-37 T 23-04-2016 RPE_RS23650 a7c95039b7e6cab9845c627165dccbbe 123 SUPERFAMILY SSF54909 1 116 1.18E-32 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RPE_RS23650 a7c95039b7e6cab9845c627165dccbbe 123 Gene3D G3DSA:3.30.70.1060 1 115 2.8E-33 T 23-04-2016 RPE_RS23650 a7c95039b7e6cab9845c627165dccbbe 123 Pfam PF03795 YCII-related domain 1 114 6.5E-25 T 23-04-2016 IPR005545 YCII-related RPE_RS23650 a7c95039b7e6cab9845c627165dccbbe 123 PANTHER PTHR35174:SF3 2 113 1.0E-37 T 23-04-2016 RPE_RS12185 f1e7355488e573e2ae9891516557a189 371 Pfam PF05621 Bacterial TniB protein 86 303 7.9E-14 T 23-04-2016 IPR008868 Bacterial TniB RPE_RS12185 f1e7355488e573e2ae9891516557a189 371 SUPERFAMILY SSF52540 80 245 5.9E-7 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS24370 4124f89057363535a024daa0e8d9dce4 368 SUPERFAMILY SSF51283 204 343 7.85E-22 T 23-04-2016 IPR029054 dUTPase-like RPE_RS24370 4124f89057363535a024daa0e8d9dce4 368 SUPERFAMILY SSF51283 12 172 3.14E-30 T 23-04-2016 IPR029054 dUTPase-like RPE_RS24370 4124f89057363535a024daa0e8d9dce4 368 PANTHER PTHR11241:SF1 3 182 5.8E-49 T 23-04-2016 RPE_RS24370 4124f89057363535a024daa0e8d9dce4 368 Pfam PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) 10 367 8.2E-173 T 23-04-2016 IPR010550 Deoxycytidine triphosphate deaminase, bacterial GO:0008829|GO:0009394 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187|UniPathway: UPA00610 RPE_RS24370 4124f89057363535a024daa0e8d9dce4 368 Gene3D G3DSA:2.70.40.10 175 344 8.6E-65 T 23-04-2016 IPR029054 dUTPase-like RPE_RS24370 4124f89057363535a024daa0e8d9dce4 368 Gene3D G3DSA:2.70.40.10 11 172 1.7E-59 T 23-04-2016 IPR029054 dUTPase-like RPE_RS24370 4124f89057363535a024daa0e8d9dce4 368 PANTHER PTHR11241 3 182 5.8E-49 T 23-04-2016 RPE_RS12535 e46ec62229cef8524ae8f0ccc0f1b0da 1006 SUPERFAMILY SSF52129 5 176 9.94E-9 T 23-04-2016 IPR029030 Caspase-like domain RPE_RS12535 e46ec62229cef8524ae8f0ccc0f1b0da 1006 Gene3D G3DSA:3.40.50.1460 3 130 9.7E-10 T 23-04-2016 IPR029030 Caspase-like domain RPE_RS12535 e46ec62229cef8524ae8f0ccc0f1b0da 1006 Pfam PF00271 Helicase conserved C-terminal domain 523 659 1.2E-4 T 23-04-2016 IPR001650 Helicase, C-terminal RPE_RS12535 e46ec62229cef8524ae8f0ccc0f1b0da 1006 SUPERFAMILY SSF52540 578 673 3.33E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12535 e46ec62229cef8524ae8f0ccc0f1b0da 1006 SUPERFAMILY SSF52540 496 548 3.33E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12535 e46ec62229cef8524ae8f0ccc0f1b0da 1006 SUPERFAMILY SSF52540 296 450 3.33E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12535 e46ec62229cef8524ae8f0ccc0f1b0da 1006 SUPERFAMILY SSF158702 784 996 6.8E-22 T 23-04-2016 RPE_RS12535 e46ec62229cef8524ae8f0ccc0f1b0da 1006 Pfam PF00270 DEAD/DEAH box helicase 296 446 9.5E-16 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RPE_RS12535 e46ec62229cef8524ae8f0ccc0f1b0da 1006 Gene3D G3DSA:3.40.50.300 583 677 2.3E-16 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12535 e46ec62229cef8524ae8f0ccc0f1b0da 1006 Gene3D G3DSA:3.40.50.300 518 547 2.3E-16 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12535 e46ec62229cef8524ae8f0ccc0f1b0da 1006 Gene3D G3DSA:3.40.50.300 263 457 5.7E-28 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12535 e46ec62229cef8524ae8f0ccc0f1b0da 1006 SMART SM00487 279 474 6.5E-16 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RPE_RS12535 e46ec62229cef8524ae8f0ccc0f1b0da 1006 SMART SM00490 572 659 2.7E-7 T 23-04-2016 IPR001650 Helicase, C-terminal RPE_RS12535 e46ec62229cef8524ae8f0ccc0f1b0da 1006 Pfam PF00656 Caspase domain 4 192 3.7E-11 T 23-04-2016 RPE_RS22480 3110b9d8f17dc369c3db345016cbbe6f 107 PANTHER PTHR23419:SF0 8 106 1.5E-40 T 23-04-2016 RPE_RS22480 3110b9d8f17dc369c3db345016cbbe6f 107 PANTHER PTHR23419 8 106 1.5E-40 T 23-04-2016 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 RPE_RS22480 3110b9d8f17dc369c3db345016cbbe6f 107 SUPERFAMILY SSF54913 4 106 1.22E-36 T 23-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta RPE_RS22480 3110b9d8f17dc369c3db345016cbbe6f 107 Pfam PF03091 CutA1 divalent ion tolerance protein 7 103 3.9E-35 T 23-04-2016 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 RPE_RS22480 3110b9d8f17dc369c3db345016cbbe6f 107 Gene3D G3DSA:3.30.70.830 3 106 6.8E-40 T 23-04-2016 RPE_RS22580 61fc3ca4d45d12ff4af3387411bf6905 404 Gene3D G3DSA:3.90.1150.10 254 377 9.4E-42 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS22580 61fc3ca4d45d12ff4af3387411bf6905 404 PANTHER PTHR11601:SF20 5 393 3.1E-161 T 23-04-2016 RPE_RS22580 61fc3ca4d45d12ff4af3387411bf6905 404 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 199 218 - T 23-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site RPE_RS22580 61fc3ca4d45d12ff4af3387411bf6905 404 PANTHER PTHR11601 5 393 3.1E-161 T 23-04-2016 RPE_RS22580 61fc3ca4d45d12ff4af3387411bf6905 404 Pfam PF00266 Aminotransferase class-V 9 372 1.2E-90 T 23-04-2016 IPR000192 Aminotransferase class V domain RPE_RS22580 61fc3ca4d45d12ff4af3387411bf6905 404 PIRSF PIRSF005572 6 387 1.9E-131 T 23-04-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 RPE_RS22580 61fc3ca4d45d12ff4af3387411bf6905 404 TIGRFAM TIGR03402 FeS_nifS: cysteine desulfurase NifS 9 389 3.7E-178 T 23-04-2016 IPR017772 Cysteine desulfurase NifS, bacterial/archaeal GO:0006520|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 RPE_RS22580 61fc3ca4d45d12ff4af3387411bf6905 404 SUPERFAMILY SSF53383 5 383 1.71E-104 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS22580 61fc3ca4d45d12ff4af3387411bf6905 404 Gene3D G3DSA:3.40.640.10 21 253 5.1E-86 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS01650 c4deb907906b17b329ae1eb7185b414a 176 PANTHER PTHR33692 5 166 5.6E-47 T 23-04-2016 RPE_RS01650 c4deb907906b17b329ae1eb7185b414a 176 Gene3D G3DSA:2.30.30.240 96 164 1.3E-18 T 23-04-2016 RPE_RS01650 c4deb907906b17b329ae1eb7185b414a 176 SUPERFAMILY SSF50346 96 164 1.67E-17 T 23-04-2016 IPR011033 PRC-barrel-like RPE_RS01650 c4deb907906b17b329ae1eb7185b414a 176 Pfam PF05239 PRC-barrel domain 93 163 1.7E-8 T 23-04-2016 IPR027275 PRC-barrel domain RPE_RS01650 c4deb907906b17b329ae1eb7185b414a 176 Gene3D G3DSA:2.40.30.60 3 90 8.1E-26 T 23-04-2016 IPR002676 RimM protein GO:0006364 RPE_RS01650 c4deb907906b17b329ae1eb7185b414a 176 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 5 166 23.604 T 23-04-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 RPE_RS01650 c4deb907906b17b329ae1eb7185b414a 176 Pfam PF01782 RimM N-terminal domain 7 87 1.2E-21 T 23-04-2016 IPR002676 RimM protein GO:0006364 RPE_RS01650 c4deb907906b17b329ae1eb7185b414a 176 SUPERFAMILY SSF50447 5 90 3.53E-20 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain RPE_RS01650 c4deb907906b17b329ae1eb7185b414a 176 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 6 163 1.3E-46 T 23-04-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 RPE_RS16745 069af078da14c6a5cec1e9774342e45e 496 SUPERFAMILY SSF53271 261 480 2.41E-74 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RPE_RS16745 069af078da14c6a5cec1e9774342e45e 496 Pfam PF00156 Phosphoribosyl transferase domain 300 397 5.2E-8 T 23-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 RPE_RS16745 069af078da14c6a5cec1e9774342e45e 496 PIRSF PIRSF000485 23 488 5.2E-166 T 23-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 RPE_RS16745 069af078da14c6a5cec1e9774342e45e 496 SUPERFAMILY SSF56235 27 253 3.0E-66 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RPE_RS16745 069af078da14c6a5cec1e9774342e45e 496 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 27 473 3.0E-152 T 23-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 RPE_RS16745 069af078da14c6a5cec1e9774342e45e 496 Gene3D G3DSA:3.60.20.10 27 269 2.2E-62 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RPE_RS16745 069af078da14c6a5cec1e9774342e45e 496 PANTHER PTHR11907 24 486 4.3E-230 T 23-04-2016 RPE_RS16745 069af078da14c6a5cec1e9774342e45e 496 Gene3D G3DSA:3.40.50.2020 282 449 1.1E-44 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RPE_RS16745 069af078da14c6a5cec1e9774342e45e 496 Pfam PF13537 Glutamine amidotransferase domain 109 224 4.0E-18 T 23-04-2016 IPR017932 Glutamine amidotransferase type 2 domain RPE_RS16745 069af078da14c6a5cec1e9774342e45e 496 PANTHER PTHR11907:SF0 24 486 4.3E-230 T 23-04-2016 RPE_RS16745 069af078da14c6a5cec1e9774342e45e 496 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 26 474 46.606 T 23-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 RPE_RS09430 37e269b9bd948f447d0255ffa0096e7a 114 Pfam PF07372 Protein of unknown function (DUF1491) 3 110 2.2E-34 T 23-04-2016 IPR009964 Protein of unknown function DUF1491 RPE_RS15375 88dde197fce631c698cb4c5e96c20964 657 Pfam PF01435 Peptidase family M48 98 305 3.7E-27 T 23-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RPE_RS15375 88dde197fce631c698cb4c5e96c20964 657 Gene3D G3DSA:3.30.2010.10 93 176 6.6E-25 T 23-04-2016 RPE_RS15375 88dde197fce631c698cb4c5e96c20964 657 PANTHER PTHR10120:SF19 61 311 1.3E-40 T 23-04-2016 RPE_RS15375 88dde197fce631c698cb4c5e96c20964 657 PANTHER PTHR10120 61 311 1.3E-40 T 23-04-2016 RPE_RS04955 10c0b6b547b43d10a5683a8de5e70d81 294 Gene3D G3DSA:3.40.920.10 7 203 1.1E-39 T 23-04-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 RPE_RS04955 10c0b6b547b43d10a5683a8de5e70d81 294 Pfam PF00037 4Fe-4S binding domain 260 279 4.2E-5 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RPE_RS04955 10c0b6b547b43d10a5683a8de5e70d81 294 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 232 243 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RPE_RS04955 10c0b6b547b43d10a5683a8de5e70d81 294 Gene3D G3DSA:3.30.70.20 218 287 6.3E-14 T 23-04-2016 RPE_RS04955 10c0b6b547b43d10a5683a8de5e70d81 294 PANTHER PTHR32154:SF22 7 202 2.6E-51 T 23-04-2016 RPE_RS04955 10c0b6b547b43d10a5683a8de5e70d81 294 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 15 197 7.4E-41 T 23-04-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 RPE_RS04955 10c0b6b547b43d10a5683a8de5e70d81 294 SUPERFAMILY SSF54862 212 280 4.57E-14 T 23-04-2016 RPE_RS04955 10c0b6b547b43d10a5683a8de5e70d81 294 SUPERFAMILY SSF53323 7 207 1.06E-45 T 23-04-2016 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 RPE_RS04955 10c0b6b547b43d10a5683a8de5e70d81 294 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 263 274 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RPE_RS04955 10c0b6b547b43d10a5683a8de5e70d81 294 PANTHER PTHR32154 7 202 2.6E-51 T 23-04-2016 RPE_RS13825 9ebb97ce6d965ab10e97d3b2c3404bc8 158 Gene3D G3DSA:3.30.530.20 1 148 5.0E-46 T 23-04-2016 IPR023393 START-like domain RPE_RS13825 9ebb97ce6d965ab10e97d3b2c3404bc8 158 SUPERFAMILY SSF55961 1 149 5.71E-33 T 23-04-2016 RPE_RS13825 9ebb97ce6d965ab10e97d3b2c3404bc8 158 PANTHER PTHR12901 1 152 2.5E-43 T 23-04-2016 RPE_RS13825 9ebb97ce6d965ab10e97d3b2c3404bc8 158 PANTHER PTHR12901:SF7 1 152 2.5E-43 T 23-04-2016 RPE_RS13825 9ebb97ce6d965ab10e97d3b2c3404bc8 158 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 11 141 3.6E-25 T 23-04-2016 IPR005031 Coenzyme Q-binding protein COQ10, START domain RPE_RS11535 bd12bbfe6f183e40a14627fe94be1725 245 PANTHER PTHR23293:SF5 1 176 6.3E-59 T 23-04-2016 RPE_RS11535 bd12bbfe6f183e40a14627fe94be1725 245 PANTHER PTHR23293 1 176 6.3E-59 T 23-04-2016 RPE_RS11535 bd12bbfe6f183e40a14627fe94be1725 245 Pfam PF00994 Probable molybdopterin binding domain 8 166 1.5E-33 T 23-04-2016 IPR001453 MoaB/Mog domain RPE_RS11535 bd12bbfe6f183e40a14627fe94be1725 245 Gene3D G3DSA:3.40.980.10 4 203 4.9E-39 T 23-04-2016 IPR001453 MoaB/Mog domain RPE_RS11535 bd12bbfe6f183e40a14627fe94be1725 245 SUPERFAMILY SSF53218 4 195 1.57E-40 T 23-04-2016 IPR001453 MoaB/Mog domain RPE_RS11535 bd12bbfe6f183e40a14627fe94be1725 245 SMART SM00852 8 168 2.6E-31 T 23-04-2016 IPR001453 MoaB/Mog domain RPE_RS06360 0557d7655fb553a0f3ba7e5827a182c7 897 Pfam PF01568 Molydopterin dinucleotide binding domain 594 705 1.5E-25 T 23-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 RPE_RS06360 0557d7655fb553a0f3ba7e5827a182c7 897 PANTHER PTHR11615:SF119 11 728 1.2E-225 T 23-04-2016 RPE_RS06360 0557d7655fb553a0f3ba7e5827a182c7 897 Gene3D G3DSA:3.40.50.740 329 577 2.8E-87 T 23-04-2016 RPE_RS06360 0557d7655fb553a0f3ba7e5827a182c7 897 Gene3D G3DSA:3.40.50.740 65 141 2.8E-87 T 23-04-2016 RPE_RS06360 0557d7655fb553a0f3ba7e5827a182c7 897 SUPERFAMILY SSF50692 565 711 1.04E-39 T 23-04-2016 IPR009010 Aspartate decarboxylase-like domain RPE_RS06360 0557d7655fb553a0f3ba7e5827a182c7 897 PANTHER PTHR11615 11 728 1.2E-225 T 23-04-2016 RPE_RS06360 0557d7655fb553a0f3ba7e5827a182c7 897 Gene3D G3DSA:3.40.228.10 142 328 1.1E-46 T 23-04-2016 RPE_RS06360 0557d7655fb553a0f3ba7e5827a182c7 897 SMART SM00926 8 62 8.5E-14 T 23-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 RPE_RS06360 0557d7655fb553a0f3ba7e5827a182c7 897 Pfam PF04324 BFD-like [2Fe-2S] binding domain 840 890 9.7E-13 T 23-04-2016 IPR007419 BFD-like [2Fe-2S]-binding domain RPE_RS06360 0557d7655fb553a0f3ba7e5827a182c7 897 Gene3D G3DSA:2.40.40.20 587 711 3.6E-39 T 23-04-2016 RPE_RS06360 0557d7655fb553a0f3ba7e5827a182c7 897 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 11 59 1.1E-15 T 23-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 RPE_RS06360 0557d7655fb553a0f3ba7e5827a182c7 897 Pfam PF00384 Molybdopterin oxidoreductase 65 493 4.0E-77 T 23-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 RPE_RS06360 0557d7655fb553a0f3ba7e5827a182c7 897 Gene3D G3DSA:2.20.25.90 11 60 2.7E-16 T 23-04-2016 RPE_RS06360 0557d7655fb553a0f3ba7e5827a182c7 897 SUPERFAMILY SSF53706 9 580 5.5E-172 T 23-04-2016 RPE_RS06455 9e5f170ca0827ecab0ba4bf068efdec1 737 Gene3D G3DSA:3.40.50.2000 524 706 7.9E-63 T 23-04-2016 RPE_RS06455 9e5f170ca0827ecab0ba4bf068efdec1 737 SUPERFAMILY SSF53756 256 718 6.28E-126 T 23-04-2016 RPE_RS06455 9e5f170ca0827ecab0ba4bf068efdec1 737 PANTHER PTHR10788 246 734 1.2E-144 T 23-04-2016 RPE_RS06455 9e5f170ca0827ecab0ba4bf068efdec1 737 PANTHER PTHR10788:SF6 246 734 1.2E-144 T 23-04-2016 RPE_RS06455 9e5f170ca0827ecab0ba4bf068efdec1 737 Gene3D G3DSA:3.40.50.2000 256 498 5.8E-66 T 23-04-2016 RPE_RS06455 9e5f170ca0827ecab0ba4bf068efdec1 737 Pfam PF00982 Glycosyltransferase family 20 257 721 1.6E-116 T 23-04-2016 IPR001830 Glycosyl transferase, family 20 GO:0003824|GO:0005992 RPE_RS14795 69256b929c4e57dd080a047512868662 331 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 130 146 - T 23-04-2016 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RPE_RS14795 69256b929c4e57dd080a047512868662 331 Gene3D G3DSA:3.30.360.10 144 305 2.8E-38 T 23-04-2016 RPE_RS14795 69256b929c4e57dd080a047512868662 331 TIGRFAM TIGR01851 argC_other: N-acetyl-gamma-glutamyl-phosphate reductase 18 324 2.9E-127 T 23-04-2016 IPR010136 N-acetyl-gamma-glutamyl-phosphate reductase, type 2 GO:0003942|GO:0005737|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RPE_RS14795 69256b929c4e57dd080a047512868662 331 SUPERFAMILY SSF51735 19 155 1.42E-29 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS14795 69256b929c4e57dd080a047512868662 331 Gene3D G3DSA:3.40.50.720 48 143 4.4E-18 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS14795 69256b929c4e57dd080a047512868662 331 SUPERFAMILY SSF55347 135 305 5.23E-36 T 23-04-2016 RPE_RS14795 69256b929c4e57dd080a047512868662 331 Hamap MF_01110 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 17 324 52.78 T 23-04-2016 IPR010136 N-acetyl-gamma-glutamyl-phosphate reductase, type 2 GO:0003942|GO:0005737|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RPE_RS14795 69256b929c4e57dd080a047512868662 331 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 59 123 6.7E-9 T 23-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RPE_RS14795 69256b929c4e57dd080a047512868662 331 PANTHER PTHR32338 18 331 7.9E-121 T 23-04-2016 RPE_RS14795 69256b929c4e57dd080a047512868662 331 SMART SM00859 20 124 8.5E-19 T 23-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RPE_RS14795 69256b929c4e57dd080a047512868662 331 PANTHER PTHR32338:SF9 18 331 7.9E-121 T 23-04-2016 RPE_RS17185 953f4d3b1264ee22847f2ee23fa88a32 290 PANTHER PTHR32308:SF0 1 290 3.4E-103 T 23-04-2016 RPE_RS17185 953f4d3b1264ee22847f2ee23fa88a32 290 PIRSF PIRSF015582 1 290 4.8E-75 T 23-04-2016 IPR011206 Citrate lyase beta subunit-like RPE_RS17185 953f4d3b1264ee22847f2ee23fa88a32 290 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 5 223 2.8E-73 T 23-04-2016 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 RPE_RS17185 953f4d3b1264ee22847f2ee23fa88a32 290 TIGRFAM TIGR01588 citE: citrate (pro-3S)-lyase, beta subunit 3 288 7.0E-140 T 23-04-2016 IPR006475 Citrate lyase, beta subunit, bacteria GO:0005737|GO:0006084|GO:0008816|GO:0009346 KEGG: 00720+4.1.3.34|MetaCyc: PWY-5392|MetaCyc: PWY-6038 RPE_RS17185 953f4d3b1264ee22847f2ee23fa88a32 290 SUPERFAMILY SSF51621 2 235 1.54E-56 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RPE_RS17185 953f4d3b1264ee22847f2ee23fa88a32 290 Gene3D G3DSA:3.20.20.60 2 235 2.6E-68 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RPE_RS17185 953f4d3b1264ee22847f2ee23fa88a32 290 PANTHER PTHR32308 1 290 3.4E-103 T 23-04-2016 IPR011206 Citrate lyase beta subunit-like RPE_RS23880 18f2e77cfcca33f08aac3121d954da72 249 PANTHER PTHR11410:SF6 1 249 2.5E-133 T 23-04-2016 RPE_RS23880 18f2e77cfcca33f08aac3121d954da72 249 PANTHER PTHR11410 1 249 2.5E-133 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RPE_RS23880 18f2e77cfcca33f08aac3121d954da72 249 ProSitePatterns PS00449 ATP synthase a subunit signature. 171 180 - T 23-04-2016 IPR023011 ATPase, F0 complex, subunit A, active site RPE_RS23880 18f2e77cfcca33f08aac3121d954da72 249 Hamap MF_01393 ATP synthase subunit a [atpB]. 6 248 15.883 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RPE_RS23880 18f2e77cfcca33f08aac3121d954da72 249 SUPERFAMILY SSF81336 81 242 2.35E-42 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RPE_RS23880 18f2e77cfcca33f08aac3121d954da72 249 Pfam PF00119 ATP synthase A chain 32 241 4.1E-51 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RPE_RS23880 18f2e77cfcca33f08aac3121d954da72 249 Gene3D G3DSA:1.20.120.220 81 246 7.8E-47 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RPE_RS23880 18f2e77cfcca33f08aac3121d954da72 249 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 5 244 4.5E-66 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RPE_RS23880 18f2e77cfcca33f08aac3121d954da72 249 PRINTS PR00123 ATP synthase A subunit signature 148 163 1.7E-27 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RPE_RS23880 18f2e77cfcca33f08aac3121d954da72 249 PRINTS PR00123 ATP synthase A subunit signature 87 103 1.7E-27 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RPE_RS23880 18f2e77cfcca33f08aac3121d954da72 249 PRINTS PR00123 ATP synthase A subunit signature 228 243 1.7E-27 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RPE_RS23880 18f2e77cfcca33f08aac3121d954da72 249 PRINTS PR00123 ATP synthase A subunit signature 168 190 1.7E-27 T 23-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RPE_RS01015 c027262a4a31ab08422316c044abcecc 140 Gene3D G3DSA:1.10.260.40 13 75 9.7E-17 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS01015 c027262a4a31ab08422316c044abcecc 140 PANTHER PTHR10245:SF38 1 134 4.2E-42 T 23-04-2016 RPE_RS01015 c027262a4a31ab08422316c044abcecc 140 SUPERFAMILY SSF47413 2 76 2.69E-28 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS01015 c027262a4a31ab08422316c044abcecc 140 SMART SM00530 16 71 9.1E-12 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RPE_RS01015 c027262a4a31ab08422316c044abcecc 140 PANTHER PTHR10245 1 134 4.2E-42 T 23-04-2016 RPE_RS01015 c027262a4a31ab08422316c044abcecc 140 Pfam PF01381 Helix-turn-helix 18 71 1.5E-11 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RPE_RS23225 3d18ca9d27f86932d9040bbf39268427 948 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 238 289 3.7E-15 T 23-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 RPE_RS23225 3d18ca9d27f86932d9040bbf39268427 948 SMART SM00929 101 141 7.6E-20 T 23-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 RPE_RS23225 3d18ca9d27f86932d9040bbf39268427 948 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 18 94 2.2E-23 T 23-04-2016 RPE_RS23225 3d18ca9d27f86932d9040bbf39268427 948 SUPERFAMILY SSF53706 237 763 2.75E-187 T 23-04-2016 RPE_RS23225 3d18ca9d27f86932d9040bbf39268427 948 SUPERFAMILY SSF50692 776 918 5.42E-41 T 23-04-2016 IPR009010 Aspartate decarboxylase-like domain RPE_RS23225 3d18ca9d27f86932d9040bbf39268427 948 Gene3D G3DSA:3.40.228.10 372 563 2.1E-55 T 23-04-2016 RPE_RS23225 3d18ca9d27f86932d9040bbf39268427 948 Gene3D G3DSA:2.40.40.20 768 919 1.2E-40 T 23-04-2016 RPE_RS23225 3d18ca9d27f86932d9040bbf39268427 948 SMART SM00926 237 291 7.6E-15 T 23-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 RPE_RS23225 3d18ca9d27f86932d9040bbf39268427 948 Gene3D G3DSA:2.20.25.90 248 291 4.6E-18 T 23-04-2016 RPE_RS23225 3d18ca9d27f86932d9040bbf39268427 948 PANTHER PTHR11615 539 937 7.9E-249 T 23-04-2016 RPE_RS23225 3d18ca9d27f86932d9040bbf39268427 948 PANTHER PTHR11615 21 69 7.9E-249 T 23-04-2016 RPE_RS23225 3d18ca9d27f86932d9040bbf39268427 948 PANTHER PTHR11615 235 494 7.9E-249 T 23-04-2016 RPE_RS23225 3d18ca9d27f86932d9040bbf39268427 948 Gene3D G3DSA:3.30.70.20 217 247 3.5E-4 T 23-04-2016 RPE_RS23225 3d18ca9d27f86932d9040bbf39268427 948 Pfam PF00384 Molybdopterin oxidoreductase 294 720 4.8E-75 T 23-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 RPE_RS23225 3d18ca9d27f86932d9040bbf39268427 948 Gene3D G3DSA:3.30.70.20 150 216 7.7E-14 T 23-04-2016 RPE_RS23225 3d18ca9d27f86932d9040bbf39268427 948 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 167 178 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RPE_RS23225 3d18ca9d27f86932d9040bbf39268427 948 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 210 221 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RPE_RS23225 3d18ca9d27f86932d9040bbf39268427 948 Gene3D G3DSA:3.10.20.30 14 74 4.2E-8 T 23-04-2016 IPR012675 Beta-grasp domain RPE_RS23225 3d18ca9d27f86932d9040bbf39268427 948 PANTHER PTHR11615:SF112 539 937 7.9E-249 T 23-04-2016 RPE_RS23225 3d18ca9d27f86932d9040bbf39268427 948 PANTHER PTHR11615:SF112 21 69 7.9E-249 T 23-04-2016 RPE_RS23225 3d18ca9d27f86932d9040bbf39268427 948 PANTHER PTHR11615:SF112 235 494 7.9E-249 T 23-04-2016 RPE_RS23225 3d18ca9d27f86932d9040bbf39268427 948 TIGRFAM TIGR01591 Fdh-alpha: formate dehydrogenase, alpha subunit 242 917 1.6E-284 T 23-04-2016 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.2.1.2|KEGG: 00680+1.2.1.2|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696 RPE_RS23225 3d18ca9d27f86932d9040bbf39268427 948 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 101 140 3.1E-17 T 23-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 RPE_RS23225 3d18ca9d27f86932d9040bbf39268427 948 Pfam PF01568 Molydopterin dinucleotide binding domain 809 913 6.0E-28 T 23-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 RPE_RS23225 3d18ca9d27f86932d9040bbf39268427 948 SUPERFAMILY SSF54292 19 92 1.17E-18 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RPE_RS23225 3d18ca9d27f86932d9040bbf39268427 948 PIRSF PIRSF036643 15 948 0.0 T 23-04-2016 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.2.1.2|KEGG: 00680+1.2.1.2|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696 RPE_RS23225 3d18ca9d27f86932d9040bbf39268427 948 Gene3D G3DSA:3.40.50.740 294 371 3.8E-86 T 23-04-2016 RPE_RS23225 3d18ca9d27f86932d9040bbf39268427 948 Gene3D G3DSA:3.40.50.740 564 767 3.8E-86 T 23-04-2016 RPE_RS23225 3d18ca9d27f86932d9040bbf39268427 948 SUPERFAMILY SSF54862 93 232 3.39E-37 T 23-04-2016 RPE_RS00770 80e553e20a341b444e6ffdb0aab63666 91 PANTHER PTHR10168 4 84 6.7E-20 T 23-04-2016 RPE_RS00770 80e553e20a341b444e6ffdb0aab63666 91 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 5 84 2.3E-29 T 23-04-2016 IPR011900 Glutaredoxin, GrxC GO:0045454 RPE_RS00770 80e553e20a341b444e6ffdb0aab63666 91 SUPERFAMILY SSF52833 4 86 5.87E-23 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS00770 80e553e20a341b444e6ffdb0aab63666 91 PRINTS PR00160 Glutaredoxin signature 5 23 4.3E-11 T 23-04-2016 IPR014025 Glutaredoxin subgroup RPE_RS00770 80e553e20a341b444e6ffdb0aab63666 91 PRINTS PR00160 Glutaredoxin signature 48 61 4.3E-11 T 23-04-2016 IPR014025 Glutaredoxin subgroup RPE_RS00770 80e553e20a341b444e6ffdb0aab63666 91 PRINTS PR00160 Glutaredoxin signature 62 75 4.3E-11 T 23-04-2016 IPR014025 Glutaredoxin subgroup RPE_RS00770 80e553e20a341b444e6ffdb0aab63666 91 Pfam PF00462 Glutaredoxin 5 65 1.1E-15 T 23-04-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 RPE_RS00770 80e553e20a341b444e6ffdb0aab63666 91 Gene3D G3DSA:3.40.30.10 2 75 1.7E-23 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS13855 a3977d0cbeeeabe1e8c53cd131e1e074 763 PANTHER PTHR24423:SF520 388 717 2.2E-97 T 23-04-2016 RPE_RS13855 a3977d0cbeeeabe1e8c53cd131e1e074 763 PANTHER PTHR24423:SF520 74 93 2.2E-97 T 23-04-2016 RPE_RS13855 a3977d0cbeeeabe1e8c53cd131e1e074 763 SUPERFAMILY SSF47384 504 578 1.71E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS13855 a3977d0cbeeeabe1e8c53cd131e1e074 763 Pfam PF00672 HAMP domain 304 372 3.3E-10 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS13855 a3977d0cbeeeabe1e8c53cd131e1e074 763 SMART SM00388 509 580 1.3E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS13855 a3977d0cbeeeabe1e8c53cd131e1e074 763 PRINTS PR00344 Bacterial sensor protein C-terminal signature 664 678 1.2E-9 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS13855 a3977d0cbeeeabe1e8c53cd131e1e074 763 PRINTS PR00344 Bacterial sensor protein C-terminal signature 693 711 1.2E-9 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS13855 a3977d0cbeeeabe1e8c53cd131e1e074 763 PRINTS PR00344 Bacterial sensor protein C-terminal signature 682 692 1.2E-9 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS13855 a3977d0cbeeeabe1e8c53cd131e1e074 763 Pfam PF00512 His Kinase A (phospho-acceptor) domain 511 577 2.5E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS13855 a3977d0cbeeeabe1e8c53cd131e1e074 763 SUPERFAMILY SSF55874 574 718 4.06E-26 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS13855 a3977d0cbeeeabe1e8c53cd131e1e074 763 SUPERFAMILY SSF55785 389 479 1.26E-11 T 23-04-2016 IPR000014 PAS domain RPE_RS13855 a3977d0cbeeeabe1e8c53cd131e1e074 763 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 623 727 2.7E-12 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS13855 a3977d0cbeeeabe1e8c53cd131e1e074 763 PIRSF PIRSF037532 5 742 5.7E-254 T 23-04-2016 IPR017232 Signal transduction histidine kinase, nitrogen fixation and metabolism regulator RPE_RS13855 a3977d0cbeeeabe1e8c53cd131e1e074 763 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 390 506 1.1E-11 T 23-04-2016 IPR000014 PAS domain RPE_RS13855 a3977d0cbeeeabe1e8c53cd131e1e074 763 SMART SM00387 620 738 1.6E-19 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS13855 a3977d0cbeeeabe1e8c53cd131e1e074 763 PANTHER PTHR24423 388 717 2.2E-97 T 23-04-2016 RPE_RS13855 a3977d0cbeeeabe1e8c53cd131e1e074 763 PANTHER PTHR24423 74 93 2.2E-97 T 23-04-2016 RPE_RS13855 a3977d0cbeeeabe1e8c53cd131e1e074 763 SMART SM00091 390 458 6.4E-5 T 23-04-2016 IPR000014 PAS domain RPE_RS13855 a3977d0cbeeeabe1e8c53cd131e1e074 763 SUPERFAMILY SSF158472 324 373 3.92E-8 T 23-04-2016 RPE_RS13855 a3977d0cbeeeabe1e8c53cd131e1e074 763 Gene3D G3DSA:3.30.565.10 586 718 1.2E-26 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS13855 a3977d0cbeeeabe1e8c53cd131e1e074 763 Gene3D G3DSA:1.10.287.130 506 576 2.4E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS13855 a3977d0cbeeeabe1e8c53cd131e1e074 763 Pfam PF00989 PAS fold 391 478 1.0E-10 T 23-04-2016 IPR013767 PAS fold GO:0006355 RPE_RS13855 a3977d0cbeeeabe1e8c53cd131e1e074 763 SMART SM00304 323 376 1.8E-9 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS13855 a3977d0cbeeeabe1e8c53cd131e1e074 763 Gene3D G3DSA:3.30.450.20 388 499 3.6E-16 T 23-04-2016 RPE_RS11320 e36652acbc6b94d6f1b9559b556c2d0f 259 Gene3D G3DSA:3.90.226.10 3 200 8.1E-53 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS11320 e36652acbc6b94d6f1b9559b556c2d0f 259 Gene3D G3DSA:1.10.12.10 201 259 1.3E-17 T 23-04-2016 IPR014748 Crontonase, C-terminal RPE_RS11320 e36652acbc6b94d6f1b9559b556c2d0f 259 PANTHER PTHR11941:SF28 2 256 8.2E-92 T 23-04-2016 RPE_RS11320 e36652acbc6b94d6f1b9559b556c2d0f 259 SUPERFAMILY SSF52096 2 258 2.41E-73 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS11320 e36652acbc6b94d6f1b9559b556c2d0f 259 PANTHER PTHR11941 2 256 8.2E-92 T 23-04-2016 RPE_RS11320 e36652acbc6b94d6f1b9559b556c2d0f 259 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 258 1.5E-54 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RPE_RS10960 dfafc2e7ede77f7c3a45be1716242f3c 302 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 81 290 3.0E-61 T 23-04-2016 RPE_RS10960 dfafc2e7ede77f7c3a45be1716242f3c 302 PANTHER PTHR10000:SF7 61 298 4.3E-72 T 23-04-2016 RPE_RS10960 dfafc2e7ede77f7c3a45be1716242f3c 302 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 88 259 3.3E-34 T 23-04-2016 IPR006383 HAD-superfamily hydrolase, subfamily IB, PSPase-like GO:0008152|GO:0016791 RPE_RS10960 dfafc2e7ede77f7c3a45be1716242f3c 302 Gene3D G3DSA:1.10.150.210 102 151 7.0E-26 T 23-04-2016 IPR023190 Phosphoserine phosphatase, domain 2 GO:0004647|GO:0006564 KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3|UniPathway: UPA00135 RPE_RS10960 dfafc2e7ede77f7c3a45be1716242f3c 302 Gene3D G3DSA:3.40.50.1000 152 290 2.6E-37 T 23-04-2016 IPR023214 HAD-like domain RPE_RS10960 dfafc2e7ede77f7c3a45be1716242f3c 302 PANTHER PTHR10000 61 298 4.3E-72 T 23-04-2016 RPE_RS10960 dfafc2e7ede77f7c3a45be1716242f3c 302 SUPERFAMILY SSF56784 84 292 2.62E-43 T 23-04-2016 IPR023214 HAD-like domain RPE_RS10960 dfafc2e7ede77f7c3a45be1716242f3c 302 Pfam PF12710 haloacid dehalogenase-like hydrolase 90 257 1.1E-15 T 23-04-2016 RPE_RS10630 6ceef006d8fe0de1ffa92f567721a0ff 301 PANTHER PTHR37423 15 301 9.3E-100 T 23-04-2016 RPE_RS10630 6ceef006d8fe0de1ffa92f567721a0ff 301 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 27 269 2.9E-85 T 23-04-2016 IPR017689 Outer membrane protein assembly factor BamD RPE_RS10630 6ceef006d8fe0de1ffa92f567721a0ff 301 SUPERFAMILY SSF48452 50 190 1.44E-10 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS10630 6ceef006d8fe0de1ffa92f567721a0ff 301 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 22 264 44.978 T 23-04-2016 IPR017689 Outer membrane protein assembly factor BamD RPE_RS10630 6ceef006d8fe0de1ffa92f567721a0ff 301 Pfam PF13525 Outer membrane lipoprotein 59 255 4.0E-50 T 23-04-2016 RPE_RS10630 6ceef006d8fe0de1ffa92f567721a0ff 301 Gene3D G3DSA:1.25.40.10 61 169 6.9E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS10630 6ceef006d8fe0de1ffa92f567721a0ff 301 Gene3D G3DSA:1.25.40.10 170 245 8.1E-4 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS10630 6ceef006d8fe0de1ffa92f567721a0ff 301 SUPERFAMILY SSF48452 156 265 1.95E-6 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS18475 97b0b32f41e3ccb6973c12ff1855480c 248 PANTHER PTHR24322 155 186 2.1E-51 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18475 97b0b32f41e3ccb6973c12ff1855480c 248 PANTHER PTHR24322 13 139 2.1E-51 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18475 97b0b32f41e3ccb6973c12ff1855480c 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 2.0E-16 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18475 97b0b32f41e3ccb6973c12ff1855480c 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 2.0E-16 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18475 97b0b32f41e3ccb6973c12ff1855480c 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 2.0E-16 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18475 97b0b32f41e3ccb6973c12ff1855480c 248 Gene3D G3DSA:3.40.50.720 2 245 7.0E-81 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS18475 97b0b32f41e3ccb6973c12ff1855480c 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 5.2E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18475 97b0b32f41e3ccb6973c12ff1855480c 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 5.2E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18475 97b0b32f41e3ccb6973c12ff1855480c 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 5.2E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18475 97b0b32f41e3ccb6973c12ff1855480c 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 5.2E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18475 97b0b32f41e3ccb6973c12ff1855480c 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 5.2E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18475 97b0b32f41e3ccb6973c12ff1855480c 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 5.2E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18475 97b0b32f41e3ccb6973c12ff1855480c 248 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RPE_RS18475 97b0b32f41e3ccb6973c12ff1855480c 248 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 244 1.1E-59 T 23-04-2016 RPE_RS18475 97b0b32f41e3ccb6973c12ff1855480c 248 SUPERFAMILY SSF51735 4 245 3.86E-79 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS17890 e5710f67be0311ae6d38ea98bfe5b479 177 Pfam PF00347 Ribosomal protein L6 91 164 5.8E-21 T 23-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RPE_RS17890 e5710f67be0311ae6d38ea98bfe5b479 177 Pfam PF00347 Ribosomal protein L6 11 82 3.6E-19 T 23-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RPE_RS17890 e5710f67be0311ae6d38ea98bfe5b479 177 Gene3D G3DSA:3.90.930.12 83 177 1.5E-40 T 23-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RPE_RS17890 e5710f67be0311ae6d38ea98bfe5b479 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 38.853 T 23-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RPE_RS17890 e5710f67be0311ae6d38ea98bfe5b479 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 23-04-2016 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17890 e5710f67be0311ae6d38ea98bfe5b479 177 Gene3D G3DSA:3.90.930.12 2 82 1.6E-30 T 23-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RPE_RS17890 e5710f67be0311ae6d38ea98bfe5b479 177 PIRSF PIRSF002162 1 177 2.0E-47 T 23-04-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 RPE_RS17890 e5710f67be0311ae6d38ea98bfe5b479 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 3.3E-33 T 23-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RPE_RS17890 e5710f67be0311ae6d38ea98bfe5b479 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 3.3E-33 T 23-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RPE_RS17890 e5710f67be0311ae6d38ea98bfe5b479 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 3.3E-33 T 23-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RPE_RS17890 e5710f67be0311ae6d38ea98bfe5b479 177 PANTHER PTHR11655 1 176 2.6E-85 T 23-04-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 RPE_RS17890 e5710f67be0311ae6d38ea98bfe5b479 177 PANTHER PTHR11655:SF14 1 176 2.6E-85 T 23-04-2016 RPE_RS17890 e5710f67be0311ae6d38ea98bfe5b479 177 SUPERFAMILY SSF56053 83 177 1.76E-37 T 23-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RPE_RS17890 e5710f67be0311ae6d38ea98bfe5b479 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 4.4E-75 T 23-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RPE_RS17890 e5710f67be0311ae6d38ea98bfe5b479 177 SUPERFAMILY SSF56053 1 82 1.03E-24 T 23-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RPE_RS20465 3d51fd97d00f79a95ede2d86d8b3c6a0 358 PANTHER PTHR37958 1 358 3.3E-98 T 23-04-2016 RPE_RS20465 3d51fd97d00f79a95ede2d86d8b3c6a0 358 Pfam PF01699 Sodium/calcium exchanger protein 214 356 1.9E-11 T 23-04-2016 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: REACT_15518 RPE_RS20465 3d51fd97d00f79a95ede2d86d8b3c6a0 358 Pfam PF01699 Sodium/calcium exchanger protein 38 186 1.2E-14 T 23-04-2016 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: REACT_15518 RPE_RS20465 3d51fd97d00f79a95ede2d86d8b3c6a0 358 PANTHER PTHR37958:SF1 1 358 3.3E-98 T 23-04-2016 RPE_RS20720 2d706f75e0091d2bfc8b54e779d58d2d 891 SUPERFAMILY SSF55073 466 623 4.24E-44 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS20720 2d706f75e0091d2bfc8b54e779d58d2d 891 SMART SM00267 450 621 7.5E-52 T 23-04-2016 IPR000160 GGDEF domain RPE_RS20720 2d706f75e0091d2bfc8b54e779d58d2d 891 Gene3D G3DSA:3.30.450.20 332 450 5.0E-12 T 23-04-2016 RPE_RS20720 2d706f75e0091d2bfc8b54e779d58d2d 891 SUPERFAMILY SSF55785 332 448 7.8E-9 T 23-04-2016 IPR000014 PAS domain RPE_RS20720 2d706f75e0091d2bfc8b54e779d58d2d 891 Pfam PF12860 PAS fold 347 454 2.3E-25 T 23-04-2016 RPE_RS20720 2d706f75e0091d2bfc8b54e779d58d2d 891 Gene3D G3DSA:3.30.450.20 187 295 1.4E-4 T 23-04-2016 RPE_RS20720 2d706f75e0091d2bfc8b54e779d58d2d 891 SUPERFAMILY SSF141868 638 879 1.05E-89 T 23-04-2016 IPR001633 EAL domain RPE_RS20720 2d706f75e0091d2bfc8b54e779d58d2d 891 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 459 619 1.7E-36 T 23-04-2016 IPR000160 GGDEF domain RPE_RS20720 2d706f75e0091d2bfc8b54e779d58d2d 891 PANTHER PTHR10799:SF657 342 731 4.4E-93 T 23-04-2016 RPE_RS20720 2d706f75e0091d2bfc8b54e779d58d2d 891 Gene3D G3DSA:3.20.20.450 636 880 3.5E-96 T 23-04-2016 IPR001633 EAL domain RPE_RS20720 2d706f75e0091d2bfc8b54e779d58d2d 891 Gene3D G3DSA:3.30.70.270 463 626 1.1E-49 T 23-04-2016 RPE_RS20720 2d706f75e0091d2bfc8b54e779d58d2d 891 Pfam PF00563 EAL domain 638 868 5.5E-73 T 23-04-2016 IPR001633 EAL domain RPE_RS20720 2d706f75e0091d2bfc8b54e779d58d2d 891 PANTHER PTHR10799 342 731 4.4E-93 T 23-04-2016 RPE_RS20720 2d706f75e0091d2bfc8b54e779d58d2d 891 Pfam PF00990 Diguanylate cyclase, GGDEF domain 461 616 2.5E-42 T 23-04-2016 IPR000160 GGDEF domain RPE_RS20720 2d706f75e0091d2bfc8b54e779d58d2d 891 SMART SM00052 631 873 6.3E-110 T 23-04-2016 IPR001633 EAL domain RPE_RS00645 750cf9cab5181cf679e8fe7ffb2748ad 273 Pfam PF11306 Protein of unknown function (DUF3108) 12 257 5.0E-35 T 23-04-2016 IPR021457 Protein of unknown function DUF3108 RPE_RS01305 2f98c32ac07386965df6b3773649be4f 169 PANTHER PTHR35368 1 169 1.2E-41 T 23-04-2016 RPE_RS01305 2f98c32ac07386965df6b3773649be4f 169 PANTHER PTHR35368:SF1 1 169 1.2E-41 T 23-04-2016 RPE_RS01305 2f98c32ac07386965df6b3773649be4f 169 Pfam PF02566 OsmC-like protein 64 165 6.9E-16 T 23-04-2016 IPR003718 OsmC/Ohr family RPE_RS01305 2f98c32ac07386965df6b3773649be4f 169 Gene3D G3DSA:3.30.300.20 2 157 1.5E-40 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta RPE_RS01305 2f98c32ac07386965df6b3773649be4f 169 SUPERFAMILY SSF82784 8 166 2.62E-30 T 23-04-2016 IPR003718 OsmC/Ohr family RPE_RS19440 f017cc9103f5cd477ff8b234c0d2fbff 499 SMART SM00345 18 77 6.4E-14 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RPE_RS19440 f017cc9103f5cd477ff8b234c0d2fbff 499 Gene3D G3DSA:1.10.10.10 6 78 4.9E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS19440 f017cc9103f5cd477ff8b234c0d2fbff 499 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 77 2.1E-14 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RPE_RS19440 f017cc9103f5cd477ff8b234c0d2fbff 499 PANTHER PTHR11751:SF10 100 481 1.7E-91 T 23-04-2016 RPE_RS19440 f017cc9103f5cd477ff8b234c0d2fbff 499 SUPERFAMILY SSF46785 8 81 1.92E-19 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS19440 f017cc9103f5cd477ff8b234c0d2fbff 499 PANTHER PTHR11751 100 481 1.7E-91 T 23-04-2016 RPE_RS19440 f017cc9103f5cd477ff8b234c0d2fbff 499 Gene3D G3DSA:3.40.640.10 155 370 4.9E-58 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS19440 f017cc9103f5cd477ff8b234c0d2fbff 499 Pfam PF00155 Aminotransferase class I and II 154 416 1.6E-25 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RPE_RS19440 f017cc9103f5cd477ff8b234c0d2fbff 499 SUPERFAMILY SSF53383 119 481 4.43E-86 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS14865 d1a8834a542639c2f5d58b23774c5fb6 517 SUPERFAMILY SSF52540 23 98 1.46E-6 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14865 d1a8834a542639c2f5d58b23774c5fb6 517 Pfam PF00271 Helicase conserved C-terminal domain 231 340 1.9E-30 T 23-04-2016 IPR001650 Helicase, C-terminal RPE_RS14865 d1a8834a542639c2f5d58b23774c5fb6 517 Pfam PF00270 DEAD/DEAH box helicase 25 193 1.2E-47 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RPE_RS14865 d1a8834a542639c2f5d58b23774c5fb6 517 SMART SM00487 20 218 7.3E-64 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RPE_RS14865 d1a8834a542639c2f5d58b23774c5fb6 517 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 151 159 - T 23-04-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site RPE_RS14865 d1a8834a542639c2f5d58b23774c5fb6 517 Gene3D G3DSA:3.40.50.300 210 373 9.8E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14865 d1a8834a542639c2f5d58b23774c5fb6 517 SUPERFAMILY SSF52540 73 357 1.95E-73 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14865 d1a8834a542639c2f5d58b23774c5fb6 517 SMART SM00490 259 340 2.4E-33 T 23-04-2016 IPR001650 Helicase, C-terminal RPE_RS14865 d1a8834a542639c2f5d58b23774c5fb6 517 PANTHER PTHR24031 1 467 8.7E-176 T 23-04-2016 RPE_RS14865 d1a8834a542639c2f5d58b23774c5fb6 517 PANTHER PTHR24031:SF261 1 467 8.7E-176 T 23-04-2016 RPE_RS14865 d1a8834a542639c2f5d58b23774c5fb6 517 Gene3D G3DSA:3.40.50.300 1 209 4.7E-77 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS08215 0f665429d5dd3848b6d139d53ff4928a 205 SMART SM01390 3 93 3.2E-36 T 23-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 RPE_RS08215 0f665429d5dd3848b6d139d53ff4928a 205 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 205 30.615 T 23-04-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 RPE_RS08215 0f665429d5dd3848b6d139d53ff4928a 205 SMART SM00363 94 158 4.8E-21 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RPE_RS08215 0f665429d5dd3848b6d139d53ff4928a 205 ProSitePatterns PS00632 Ribosomal protein S4 signature. 92 116 - T 23-04-2016 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 RPE_RS08215 0f665429d5dd3848b6d139d53ff4928a 205 SUPERFAMILY SSF55174 6 205 7.33E-61 T 23-04-2016 RPE_RS08215 0f665429d5dd3848b6d139d53ff4928a 205 PANTHER PTHR11831 1 205 1.6E-71 T 23-04-2016 IPR022801 Ribosomal protein S4/S9 RPE_RS08215 0f665429d5dd3848b6d139d53ff4928a 205 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 6 93 5.9E-20 T 23-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 RPE_RS08215 0f665429d5dd3848b6d139d53ff4928a 205 Gene3D G3DSA:1.10.1050.10 1 96 3.3E-31 T 23-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 RPE_RS08215 0f665429d5dd3848b6d139d53ff4928a 205 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 6 205 3.2E-69 T 23-04-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 RPE_RS08215 0f665429d5dd3848b6d139d53ff4928a 205 Gene3D G3DSA:3.10.290.10 97 194 1.5E-31 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RPE_RS08215 0f665429d5dd3848b6d139d53ff4928a 205 PANTHER PTHR11831:SF4 1 205 1.6E-71 T 23-04-2016 RPE_RS08215 0f665429d5dd3848b6d139d53ff4928a 205 Pfam PF01479 S4 domain 94 141 2.1E-19 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RPE_RS17180 6dac48c4aafb0831e669bab139264b00 97 Hamap MF_00805 Citrate lyase acyl carrier protein [citD]. 1 96 24.751 T 23-04-2016 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 RPE_RS17180 6dac48c4aafb0831e669bab139264b00 97 TIGRFAM TIGR01608 citD: citrate lyase acyl carrier protein 1 93 2.2E-31 T 23-04-2016 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 RPE_RS17180 6dac48c4aafb0831e669bab139264b00 97 Pfam PF06857 Malonate decarboxylase delta subunit (MdcD) 7 85 1.3E-28 T 23-04-2016 IPR023439 Malonate decarboxylase/citrate lyase acyl carrier protein RPE_RS17180 6dac48c4aafb0831e669bab139264b00 97 PIRSF PIRSF002736 1 96 8.0E-35 T 23-04-2016 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 RPE_RS17180 6dac48c4aafb0831e669bab139264b00 97 ProDom PD015389 LYASE CITRATE ACYL CARRIER GAMMA CHAIN CITD PRECURSOR SIGNAL DIRECT 1 81 5.0E-40 T 23-04-2016 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 RPE_RS14565 c2cc7a1d4437c80ddf8759ef5e5edb46 91 Gene3D G3DSA:3.40.630.30 3 90 5.2E-23 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS14565 c2cc7a1d4437c80ddf8759ef5e5edb46 91 PANTHER PTHR31435 1 91 6.9E-21 T 23-04-2016 RPE_RS14565 c2cc7a1d4437c80ddf8759ef5e5edb46 91 Pfam PF14542 GCN5-related N-acetyl-transferase 13 89 3.1E-21 T 23-04-2016 IPR031165 Yjdj-type Gcn5-related N-acetyltransferase RPE_RS14565 c2cc7a1d4437c80ddf8759ef5e5edb46 91 SUPERFAMILY SSF55729 4 90 1.57E-24 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS21330 d5a11b3dd5c1a8a1dff7db091ff5e1ce 441 SUPERFAMILY SSF52540 90 358 7.36E-91 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS21330 d5a11b3dd5c1a8a1dff7db091ff5e1ce 441 SMART SM00382 156 339 3.7E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS21330 d5a11b3dd5c1a8a1dff7db091ff5e1ce 441 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 345 354 - T 23-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RPE_RS21330 d5a11b3dd5c1a8a1dff7db091ff5e1ce 441 PANTHER PTHR15184:SF9 1 434 8.9E-205 T 23-04-2016 IPR032463 ATPase, type III secretion system, FliI GO:0016887|GO:0030257|GO:0044780 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RPE_RS21330 d5a11b3dd5c1a8a1dff7db091ff5e1ce 441 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 5 434 4.3E-160 T 23-04-2016 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RPE_RS21330 d5a11b3dd5c1a8a1dff7db091ff5e1ce 441 TIGRFAM TIGR03498 FliI_clade3: flagellar protein export ATPase FliI 18 434 9.7E-199 T 23-04-2016 IPR022426 Flagellum-specific ATP synthase FliI, clade 3 GO:0009288|GO:0016887|GO:0030257|GO:0044781 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RPE_RS21330 d5a11b3dd5c1a8a1dff7db091ff5e1ce 441 PANTHER PTHR15184 1 434 8.9E-205 T 23-04-2016 RPE_RS21330 d5a11b3dd5c1a8a1dff7db091ff5e1ce 441 Gene3D G3DSA:3.40.50.300 91 356 3.1E-88 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS21330 d5a11b3dd5c1a8a1dff7db091ff5e1ce 441 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 144 354 5.9E-73 T 23-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RPE_RS11995 87347358fb3e98b704f844ebe812c483 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 9.5E-23 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11995 87347358fb3e98b704f844ebe812c483 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 184 9.5E-23 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11995 87347358fb3e98b704f844ebe812c483 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 9.5E-23 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11995 87347358fb3e98b704f844ebe812c483 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 92 103 9.5E-23 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11995 87347358fb3e98b704f844ebe812c483 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 155 9.5E-23 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11995 87347358fb3e98b704f844ebe812c483 305 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 9.5E-23 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11995 87347358fb3e98b704f844ebe812c483 305 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 152 180 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RPE_RS11995 87347358fb3e98b704f844ebe812c483 305 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 204 7.8E-5 T 23-04-2016 RPE_RS11995 87347358fb3e98b704f844ebe812c483 305 PANTHER PTHR24322:SF530 55 149 1.0E-46 T 23-04-2016 RPE_RS11995 87347358fb3e98b704f844ebe812c483 305 PANTHER PTHR24322:SF530 165 196 1.0E-46 T 23-04-2016 RPE_RS11995 87347358fb3e98b704f844ebe812c483 305 PANTHER PTHR24322:SF530 12 31 1.0E-46 T 23-04-2016 RPE_RS11995 87347358fb3e98b704f844ebe812c483 305 SUPERFAMILY SSF51735 1 235 5.23E-64 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS11995 87347358fb3e98b704f844ebe812c483 305 Pfam PF00106 short chain dehydrogenase 9 204 3.4E-42 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11995 87347358fb3e98b704f844ebe812c483 305 Gene3D G3DSA:3.40.50.720 2 245 4.0E-63 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS11995 87347358fb3e98b704f844ebe812c483 305 PANTHER PTHR24322 165 196 1.0E-46 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11995 87347358fb3e98b704f844ebe812c483 305 PANTHER PTHR24322 55 149 1.0E-46 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11995 87347358fb3e98b704f844ebe812c483 305 PANTHER PTHR24322 12 31 1.0E-46 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11995 87347358fb3e98b704f844ebe812c483 305 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 92 103 3.3E-5 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11995 87347358fb3e98b704f844ebe812c483 305 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 153 3.3E-5 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11995 87347358fb3e98b704f844ebe812c483 305 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 184 3.3E-5 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS13500 041923733ec8d6ef2bb3b0aa06be4f50 597 SMART SM00836 461 596 1.9E-51 T 23-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RPE_RS13500 041923733ec8d6ef2bb3b0aa06be4f50 597 PRINTS PR01038 Arginyl-tRNA synthetase signature 145 161 3.1E-24 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RPE_RS13500 041923733ec8d6ef2bb3b0aa06be4f50 597 PRINTS PR01038 Arginyl-tRNA synthetase signature 130 145 3.1E-24 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RPE_RS13500 041923733ec8d6ef2bb3b0aa06be4f50 597 PRINTS PR01038 Arginyl-tRNA synthetase signature 169 182 3.1E-24 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RPE_RS13500 041923733ec8d6ef2bb3b0aa06be4f50 597 PRINTS PR01038 Arginyl-tRNA synthetase signature 330 351 3.1E-24 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RPE_RS13500 041923733ec8d6ef2bb3b0aa06be4f50 597 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 32 101 5.8E-24 T 23-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RPE_RS13500 041923733ec8d6ef2bb3b0aa06be4f50 597 SUPERFAMILY SSF52374 125 472 2.34E-81 T 23-04-2016 RPE_RS13500 041923733ec8d6ef2bb3b0aa06be4f50 597 PANTHER PTHR11956 9 312 2.5E-184 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RPE_RS13500 041923733ec8d6ef2bb3b0aa06be4f50 597 PANTHER PTHR11956 328 596 2.5E-184 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RPE_RS13500 041923733ec8d6ef2bb3b0aa06be4f50 597 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 39 596 2.3E-105 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RPE_RS13500 041923733ec8d6ef2bb3b0aa06be4f50 597 PANTHER PTHR11956:SF6 9 312 2.5E-184 T 23-04-2016 RPE_RS13500 041923733ec8d6ef2bb3b0aa06be4f50 597 PANTHER PTHR11956:SF6 328 596 2.5E-184 T 23-04-2016 RPE_RS13500 041923733ec8d6ef2bb3b0aa06be4f50 597 Gene3D G3DSA:3.40.50.620 123 466 6.4E-96 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS13500 041923733ec8d6ef2bb3b0aa06be4f50 597 Pfam PF00750 tRNA synthetases class I (R) 111 186 8.8E-15 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RPE_RS13500 041923733ec8d6ef2bb3b0aa06be4f50 597 Gene3D G3DSA:3.30.1360.70 18 120 6.1E-32 T 23-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RPE_RS13500 041923733ec8d6ef2bb3b0aa06be4f50 597 Gene3D G3DSA:1.10.730.10 467 596 1.6E-33 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS13500 041923733ec8d6ef2bb3b0aa06be4f50 597 Pfam PF05746 DALR anticodon binding domain 461 596 3.7E-30 T 23-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RPE_RS13500 041923733ec8d6ef2bb3b0aa06be4f50 597 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 140 149 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS13500 041923733ec8d6ef2bb3b0aa06be4f50 597 SMART SM01016 12 101 3.5E-37 T 23-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RPE_RS13500 041923733ec8d6ef2bb3b0aa06be4f50 597 SUPERFAMILY SSF55190 29 121 1.96E-25 T 23-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RPE_RS13500 041923733ec8d6ef2bb3b0aa06be4f50 597 SUPERFAMILY SSF47323 455 596 4.12E-30 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS13500 041923733ec8d6ef2bb3b0aa06be4f50 597 Hamap MF_00123 Arginine--tRNA ligase [argS]. 12 596 24.185 T 23-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RPE_RS03740 553649387dd383d60939a3711903247a 231 Gene3D G3DSA:3.50.30.40 28 186 5.0E-48 T 23-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein RPE_RS03740 553649387dd383d60939a3711903247a 231 PANTHER PTHR33254:SF5 5 231 4.0E-75 T 23-04-2016 RPE_RS03740 553649387dd383d60939a3711903247a 231 TIGRFAM TIGR02798 ligK_PcmE: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase 9 230 6.7E-125 T 23-04-2016 IPR014165 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase KEGG: 00362+4.1.3.17|KEGG: 00660+4.1.3.17|MetaCyc: PWY-7701 RPE_RS03740 553649387dd383d60939a3711903247a 231 SUPERFAMILY SSF89562 28 190 4.45E-47 T 23-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein RPE_RS03740 553649387dd383d60939a3711903247a 231 PANTHER PTHR33254 5 231 4.0E-75 T 23-04-2016 RPE_RS03740 553649387dd383d60939a3711903247a 231 Pfam PF03737 Demethylmenaquinone methyltransferase 32 179 3.4E-38 T 23-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein RPE_RS02950 3b88e8cdc80662637536a39f9d454955 163 Gene3D G3DSA:3.10.20.30 11 84 1.6E-27 T 23-04-2016 IPR012675 Beta-grasp domain RPE_RS02950 3b88e8cdc80662637536a39f9d454955 163 Gene3D G3DSA:1.10.150.120 85 160 2.2E-35 T 23-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RPE_RS02950 3b88e8cdc80662637536a39f9d454955 163 Pfam PF01799 [2Fe-2S] binding domain 83 155 1.1E-30 T 23-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RPE_RS02950 3b88e8cdc80662637536a39f9d454955 163 TIGRFAM TIGR03193 4hydroxCoAred: 4-hydroxybenzoyl-CoA reductase, gamma subunit 12 159 2.9E-89 T 23-04-2016 IPR017606 4-hydroxybenzoyl-CoA reductase, gamma subunit KEGG: 00362+1.3.7.9|KEGG: 00627+1.3.7.9|MetaCyc: PWY-6080|MetaCyc: PWY-7046 RPE_RS02950 3b88e8cdc80662637536a39f9d454955 163 PANTHER PTHR11908 13 156 1.2E-46 T 23-04-2016 RPE_RS02950 3b88e8cdc80662637536a39f9d454955 163 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 16 70 7.4E-8 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RPE_RS02950 3b88e8cdc80662637536a39f9d454955 163 SUPERFAMILY SSF54292 13 88 1.57E-23 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RPE_RS02950 3b88e8cdc80662637536a39f9d454955 163 SUPERFAMILY SSF47741 94 161 2.62E-31 T 23-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RPE_RS02950 3b88e8cdc80662637536a39f9d454955 163 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 49 57 - T 23-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RPE_RS10070 ff26c155dca94bf0e0bc69e926ff18a9 656 Pfam PF00664 ABC transporter transmembrane region 51 332 9.1E-34 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RPE_RS10070 ff26c155dca94bf0e0bc69e926ff18a9 656 Pfam PF00005 ABC transporter 394 543 7.3E-34 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS10070 ff26c155dca94bf0e0bc69e926ff18a9 656 PANTHER PTHR24221 4 622 0.0 T 23-04-2016 RPE_RS10070 ff26c155dca94bf0e0bc69e926ff18a9 656 ProSitePatterns PS00211 ABC transporters family signature. 515 529 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS10070 ff26c155dca94bf0e0bc69e926ff18a9 656 Gene3D G3DSA:3.40.50.300 377 608 4.4E-83 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10070 ff26c155dca94bf0e0bc69e926ff18a9 656 SUPERFAMILY SSF90123 32 366 3.79E-61 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RPE_RS10070 ff26c155dca94bf0e0bc69e926ff18a9 656 Gene3D G3DSA:1.20.1560.10 32 360 1.4E-62 T 23-04-2016 RPE_RS10070 ff26c155dca94bf0e0bc69e926ff18a9 656 PANTHER PTHR24221:SF250 4 622 0.0 T 23-04-2016 RPE_RS10070 ff26c155dca94bf0e0bc69e926ff18a9 656 SUPERFAMILY SSF52540 367 613 1.84E-91 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10070 ff26c155dca94bf0e0bc69e926ff18a9 656 SMART SM00382 403 589 7.6E-16 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS15725 0a5665af4590c48ff3fed6c6133e2548 293 PANTHER PTHR33608 13 293 5.2E-18 T 23-04-2016 RPE_RS15725 0a5665af4590c48ff3fed6c6133e2548 293 Pfam PF01882 Protein of unknown function DUF58 54 126 4.7E-8 T 23-04-2016 IPR002881 Domain of unknown function DUF58 RPE_RS15725 0a5665af4590c48ff3fed6c6133e2548 293 SUPERFAMILY SSF53300 78 197 5.68E-8 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS03550 39da5380785ed0973b79d55ce9bdc2c0 199 Gene3D G3DSA:3.40.50.360 1 198 1.8E-72 T 23-04-2016 IPR029039 Flavoprotein-like domain RPE_RS03550 39da5380785ed0973b79d55ce9bdc2c0 199 Pfam PF03358 NADPH-dependent FMN reductase 3 141 7.1E-12 T 23-04-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 RPE_RS03550 39da5380785ed0973b79d55ce9bdc2c0 199 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 2 197 1.3E-95 T 23-04-2016 IPR010089 Flavoprotein WrbA GO:0010181|GO:0045892 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 RPE_RS03550 39da5380785ed0973b79d55ce9bdc2c0 199 PANTHER PTHR30546 1 197 4.5E-125 T 23-04-2016 RPE_RS03550 39da5380785ed0973b79d55ce9bdc2c0 199 PANTHER PTHR30546:SF10 1 197 4.5E-125 T 23-04-2016 RPE_RS03550 39da5380785ed0973b79d55ce9bdc2c0 199 SUPERFAMILY SSF52218 1 198 2.49E-60 T 23-04-2016 IPR029039 Flavoprotein-like domain RPE_RS03550 39da5380785ed0973b79d55ce9bdc2c0 199 Hamap MF_01017 NAD(P)H dehydrogenase (quinone). 1 199 42.407 T 23-04-2016 IPR010089 Flavoprotein WrbA GO:0010181|GO:0045892 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 RPE_RS06740 7e2d7a4d4ce48ee25ae297844ccee13c 401 SUPERFAMILY SSF51905 267 375 6.11E-41 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS06740 7e2d7a4d4ce48ee25ae297844ccee13c 401 SUPERFAMILY SSF51905 7 169 6.11E-41 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS06740 7e2d7a4d4ce48ee25ae297844ccee13c 401 Gene3D G3DSA:3.50.50.60 6 163 5.4E-19 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS06740 7e2d7a4d4ce48ee25ae297844ccee13c 401 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 159 1.4E-8 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS06740 7e2d7a4d4ce48ee25ae297844ccee13c 401 TIGRFAM TIGR02032 GG-red-SF: geranylgeranyl reductase family 8 307 7.2E-76 T 23-04-2016 IPR011777 Geranylgeranyl reductase family GO:0016628|GO:0055114 RPE_RS06740 7e2d7a4d4ce48ee25ae297844ccee13c 401 PANTHER PTHR10617:SF101 8 393 4.1E-65 T 23-04-2016 RPE_RS06740 7e2d7a4d4ce48ee25ae297844ccee13c 401 Gene3D G3DSA:3.30.9.10 164 318 4.6E-43 T 23-04-2016 RPE_RS06740 7e2d7a4d4ce48ee25ae297844ccee13c 401 TIGRFAM TIGR02023 BchP-ChlP: geranylgeranyl reductase 8 395 2.3E-155 T 23-04-2016 IPR010253 Geranylgeranyl reductase, plant/prokaryotic GO:0015979|GO:0015995|GO:0045550|GO:0055114 KEGG: 00900+1.3.1.83|UniPathway: UPA00668 RPE_RS06740 7e2d7a4d4ce48ee25ae297844ccee13c 401 PANTHER PTHR10617 8 393 4.1E-65 T 23-04-2016 RPE_RS06740 7e2d7a4d4ce48ee25ae297844ccee13c 401 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 9 31 1.2E-13 T 23-04-2016 RPE_RS06740 7e2d7a4d4ce48ee25ae297844ccee13c 401 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 148 163 1.2E-13 T 23-04-2016 RPE_RS06740 7e2d7a4d4ce48ee25ae297844ccee13c 401 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 272 287 1.2E-13 T 23-04-2016 RPE_RS07650 5bef39acfeaf06724a1a7503b75ccf66 257 SUPERFAMILY SSF53335 35 198 1.41E-30 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS07650 5bef39acfeaf06724a1a7503b75ccf66 257 PANTHER PTHR10108 39 195 2.4E-21 T 23-04-2016 RPE_RS07650 5bef39acfeaf06724a1a7503b75ccf66 257 Pfam PF13649 Methyltransferase domain 52 146 6.7E-20 T 23-04-2016 RPE_RS07650 5bef39acfeaf06724a1a7503b75ccf66 257 Gene3D G3DSA:3.40.50.150 38 200 5.0E-30 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS17675 db5876e48702466ce3d89ca5d9da9de5 286 SUPERFAMILY SSF54637 15 159 1.8E-33 T 23-04-2016 IPR029069 HotDog domain RPE_RS17675 db5876e48702466ce3d89ca5d9da9de5 286 Gene3D G3DSA:3.10.129.10 1 145 1.7E-36 T 23-04-2016 IPR029069 HotDog domain RPE_RS17675 db5876e48702466ce3d89ca5d9da9de5 286 Pfam PF13452 N-terminal half of MaoC dehydratase 55 138 6.7E-7 T 23-04-2016 RPE_RS17675 db5876e48702466ce3d89ca5d9da9de5 286 PANTHER PTHR13078:SF5 1 286 3.8E-132 T 23-04-2016 RPE_RS17675 db5876e48702466ce3d89ca5d9da9de5 286 SUPERFAMILY SSF54637 163 282 4.02E-34 T 23-04-2016 IPR029069 HotDog domain RPE_RS17675 db5876e48702466ce3d89ca5d9da9de5 286 PANTHER PTHR13078 1 286 3.8E-132 T 23-04-2016 RPE_RS17675 db5876e48702466ce3d89ca5d9da9de5 286 Gene3D G3DSA:3.10.129.10 146 285 1.9E-46 T 23-04-2016 IPR029069 HotDog domain RPE_RS17675 db5876e48702466ce3d89ca5d9da9de5 286 Pfam PF01575 MaoC like domain 165 279 1.7E-30 T 23-04-2016 IPR002539 MaoC-like domain RPE_RS16130 d17192ae8dd230def536dd59986e529f 402 Gene3D G3DSA:3.40.47.10 14 125 2.4E-16 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS16130 d17192ae8dd230def536dd59986e529f 402 Gene3D G3DSA:3.40.47.10 200 274 2.4E-16 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS16130 d17192ae8dd230def536dd59986e529f 402 PIRSF PIRSF000429 5 400 1.0E-49 T 23-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RPE_RS16130 d17192ae8dd230def536dd59986e529f 402 Pfam PF00108 Thiolase, N-terminal domain 15 265 1.1E-17 T 23-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 RPE_RS16130 d17192ae8dd230def536dd59986e529f 402 Pfam PF02803 Thiolase, C-terminal domain 278 397 6.8E-17 T 23-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 RPE_RS16130 d17192ae8dd230def536dd59986e529f 402 SUPERFAMILY SSF53901 11 272 7.6E-36 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS16130 d17192ae8dd230def536dd59986e529f 402 PANTHER PTHR18919:SF95 15 400 2.2E-30 T 23-04-2016 RPE_RS16130 d17192ae8dd230def536dd59986e529f 402 Gene3D G3DSA:3.40.47.10 147 194 7.9E-24 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS16130 d17192ae8dd230def536dd59986e529f 402 Gene3D G3DSA:3.40.47.10 283 398 7.9E-24 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS16130 d17192ae8dd230def536dd59986e529f 402 PANTHER PTHR18919 15 400 2.2E-30 T 23-04-2016 RPE_RS16130 d17192ae8dd230def536dd59986e529f 402 SUPERFAMILY SSF53901 279 397 1.47E-23 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS06835 84d3aad2900e31ed6397f377c906b068 367 PANTHER PTHR31053 34 366 2.7E-140 T 23-04-2016 RPE_RS06835 84d3aad2900e31ed6397f377c906b068 367 PANTHER PTHR31053:SF1 34 366 2.7E-140 T 23-04-2016 RPE_RS06835 84d3aad2900e31ed6397f377c906b068 367 Pfam PF02915 Rubrerythrin 99 229 5.7E-36 T 23-04-2016 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 RPE_RS06835 84d3aad2900e31ed6397f377c906b068 367 SUPERFAMILY SSF47240 90 231 1.7E-20 T 23-04-2016 IPR009078 Ferritin-like superfamily RPE_RS06835 84d3aad2900e31ed6397f377c906b068 367 Hamap MF_01840 Aerobic magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase [acsF]. 20 362 46.141 T 23-04-2016 IPR008434 Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase GO:0015979|GO:0015995|GO:0046872|GO:0048529 KEGG: 00860+1.14.13.81 RPE_RS06835 84d3aad2900e31ed6397f377c906b068 367 Gene3D G3DSA:1.20.1260.10 96 155 1.2E-6 T 23-04-2016 IPR012347 Ferritin-related RPE_RS06835 84d3aad2900e31ed6397f377c906b068 367 TIGRFAM TIGR02029 AcsF: magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase 27 354 2.9E-148 T 23-04-2016 IPR008434 Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase GO:0015979|GO:0015995|GO:0046872|GO:0048529 KEGG: 00860+1.14.13.81 RPE_RS06495 f81487b2839c95574f5686c010c08341 87 PANTHER PTHR36582:SF2 1 59 2.4E-13 T 23-04-2016 RPE_RS06495 f81487b2839c95574f5686c010c08341 87 PANTHER PTHR36582 1 59 2.4E-13 T 23-04-2016 RPE_RS06495 f81487b2839c95574f5686c010c08341 87 Pfam PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH 12 73 1.6E-9 T 23-04-2016 IPR022789 Antitoxin ParD RPE_RS16475 0cc4ee6e3d72ba70ba1f01af479b7643 216 PANTHER PTHR10520:SF10 2 196 3.4E-92 T 23-04-2016 RPE_RS16475 0cc4ee6e3d72ba70ba1f01af479b7643 216 SUPERFAMILY SSF53328 4 195 4.06E-59 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RPE_RS16475 0cc4ee6e3d72ba70ba1f01af479b7643 216 Pfam PF00551 Formyl transferase 4 184 1.7E-56 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RPE_RS16475 0cc4ee6e3d72ba70ba1f01af479b7643 216 Gene3D G3DSA:3.40.50.170 3 196 6.5E-67 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RPE_RS16475 0cc4ee6e3d72ba70ba1f01af479b7643 216 PANTHER PTHR10520 2 196 3.4E-92 T 23-04-2016 RPE_RS16475 0cc4ee6e3d72ba70ba1f01af479b7643 216 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 4 192 1.1E-66 T 23-04-2016 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|UniPathway: UPA00074 RPE_RS16475 0cc4ee6e3d72ba70ba1f01af479b7643 216 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 4 190 31.042 T 23-04-2016 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|UniPathway: UPA00074 RPE_RS20960 9982bddb6ba6de23228f1e62963d79f8 95 Gene3D G3DSA:1.10.260.40 35 88 3.4E-7 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS20960 9982bddb6ba6de23228f1e62963d79f8 95 SUPERFAMILY SSF47413 25 88 3.41E-10 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS20960 9982bddb6ba6de23228f1e62963d79f8 95 PANTHER PTHR40275:SF1 1 95 6.8E-26 T 23-04-2016 RPE_RS20960 9982bddb6ba6de23228f1e62963d79f8 95 TIGRFAM TIGR02684 dnstrm_HI1420: probable addiction module antidote protein 4 90 4.1E-35 T 23-04-2016 IPR014057 Addiction module antidote protein, HI1420 RPE_RS20960 9982bddb6ba6de23228f1e62963d79f8 95 PANTHER PTHR40275 1 95 6.8E-26 T 23-04-2016 RPE_RS18415 bbbd76b787f815c62beade09dd844834 626 Pfam PF07670 Nucleoside recognition 465 595 5.7E-31 T 23-04-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: REACT_15518|Reactome: REACT_1698 RPE_RS18415 bbbd76b787f815c62beade09dd844834 626 Pfam PF07670 Nucleoside recognition 295 386 4.1E-11 T 23-04-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: REACT_15518|Reactome: REACT_1698 RPE_RS18415 bbbd76b787f815c62beade09dd844834 626 SUPERFAMILY SSF52540 8 175 3.08E-34 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18415 bbbd76b787f815c62beade09dd844834 626 PANTHER PTHR11649:SF37 210 621 9.4E-238 T 23-04-2016 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 RPE_RS18415 bbbd76b787f815c62beade09dd844834 626 PANTHER PTHR11649:SF37 1 157 9.4E-238 T 23-04-2016 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 RPE_RS18415 bbbd76b787f815c62beade09dd844834 626 Gene3D G3DSA:3.40.50.300 8 174 8.1E-32 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18415 bbbd76b787f815c62beade09dd844834 626 Pfam PF02421 Ferrous iron transport protein B 10 168 1.1E-50 T 23-04-2016 IPR011619 Ferrous iron transport protein B, N-terminal GO:0005525|GO:0015093|GO:0015684|GO:0016021 RPE_RS18415 bbbd76b787f815c62beade09dd844834 626 Pfam PF07664 Ferrous iron transport protein B C terminus 406 459 3.8E-13 T 23-04-2016 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 RPE_RS18415 bbbd76b787f815c62beade09dd844834 626 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 32 50 8.7E-7 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RPE_RS18415 bbbd76b787f815c62beade09dd844834 626 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 11 31 8.7E-7 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RPE_RS18415 bbbd76b787f815c62beade09dd844834 626 PANTHER PTHR11649 210 621 9.4E-238 T 23-04-2016 RPE_RS18415 bbbd76b787f815c62beade09dd844834 626 PANTHER PTHR11649 1 157 9.4E-238 T 23-04-2016 RPE_RS10190 d65a3e3616400985e8987831afc8d849 641 PANTHER PTHR10799 489 617 2.0E-25 T 23-04-2016 RPE_RS10190 d65a3e3616400985e8987831afc8d849 641 SMART SM00086 402 445 6.0E-6 T 23-04-2016 IPR001610 PAC motif RPE_RS10190 d65a3e3616400985e8987831afc8d849 641 Pfam PF00990 Diguanylate cyclase, GGDEF domain 463 617 5.7E-41 T 23-04-2016 IPR000160 GGDEF domain RPE_RS10190 d65a3e3616400985e8987831afc8d849 641 Pfam PF08447 PAS fold 354 433 3.2E-15 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 RPE_RS10190 d65a3e3616400985e8987831afc8d849 641 Pfam PF02743 Cache domain 49 229 8.1E-16 T 23-04-2016 IPR033479 Double Cache domain 1 RPE_RS10190 d65a3e3616400985e8987831afc8d849 641 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 326 452 5.2E-24 T 23-04-2016 IPR000014 PAS domain RPE_RS10190 d65a3e3616400985e8987831afc8d849 641 SMART SM00267 452 622 4.0E-53 T 23-04-2016 IPR000160 GGDEF domain RPE_RS10190 d65a3e3616400985e8987831afc8d849 641 Gene3D G3DSA:3.30.450.20 333 462 6.7E-28 T 23-04-2016 RPE_RS10190 d65a3e3616400985e8987831afc8d849 641 SMART SM00091 330 396 1.3E-11 T 23-04-2016 IPR000014 PAS domain RPE_RS10190 d65a3e3616400985e8987831afc8d849 641 SUPERFAMILY SSF55073 468 621 3.3E-39 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS10190 d65a3e3616400985e8987831afc8d849 641 Gene3D G3DSA:3.30.70.270 465 621 3.1E-45 T 23-04-2016 RPE_RS10190 d65a3e3616400985e8987831afc8d849 641 SUPERFAMILY SSF55785 318 443 4.05E-28 T 23-04-2016 IPR000014 PAS domain RPE_RS10190 d65a3e3616400985e8987831afc8d849 641 Gene3D G3DSA:3.30.450.20 95 189 8.3E-13 T 23-04-2016 RPE_RS10190 d65a3e3616400985e8987831afc8d849 641 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 459 619 6.6E-43 T 23-04-2016 IPR000160 GGDEF domain RPE_RS23835 e349b8600542d8a3e24dc035c22774cf 174 SUPERFAMILY SSF53098 11 163 5.12E-49 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RPE_RS23835 e349b8600542d8a3e24dc035c22774cf 174 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 122 156 - T 23-04-2016 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 RPE_RS23835 e349b8600542d8a3e24dc035c22774cf 174 Gene3D G3DSA:3.30.420.10 10 163 2.4E-58 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RPE_RS23835 e349b8600542d8a3e24dc035c22774cf 174 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 12 159 3.0E-47 T 23-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RPE_RS23835 e349b8600542d8a3e24dc035c22774cf 174 PANTHER PTHR30194 4 174 8.0E-64 T 23-04-2016 RPE_RS23835 e349b8600542d8a3e24dc035c22774cf 174 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 12 162 3.3E-46 T 23-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RPE_RS23835 e349b8600542d8a3e24dc035c22774cf 174 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 10 162 47.14 T 23-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RPE_RS23835 e349b8600542d8a3e24dc035c22774cf 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 70 86 1.2E-33 T 23-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RPE_RS23835 e349b8600542d8a3e24dc035c22774cf 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 147 159 1.2E-33 T 23-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RPE_RS23835 e349b8600542d8a3e24dc035c22774cf 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 13 26 1.2E-33 T 23-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RPE_RS23835 e349b8600542d8a3e24dc035c22774cf 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 116 135 1.2E-33 T 23-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RPE_RS23835 e349b8600542d8a3e24dc035c22774cf 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 92 108 1.2E-33 T 23-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RPE_RS21685 954be2289e924250dff873512f5c901b 690 Pfam PF01551 Peptidase family M23 532 628 5.0E-30 T 23-04-2016 IPR016047 Peptidase M23 RPE_RS21685 954be2289e924250dff873512f5c901b 690 SUPERFAMILY SSF51261 411 630 1.78E-61 T 23-04-2016 IPR011055 Duplicated hybrid motif RPE_RS21685 954be2289e924250dff873512f5c901b 690 Gene3D G3DSA:2.70.70.10 489 631 2.5E-44 T 23-04-2016 RPE_RS21685 954be2289e924250dff873512f5c901b 690 PANTHER PTHR21666 513 641 8.6E-43 T 23-04-2016 RPE_RS06465 cd30fc9f8954d52fde2120f71f760a81 483 PANTHER PTHR10283:SF82 2 482 1.3E-152 T 23-04-2016 RPE_RS06465 cd30fc9f8954d52fde2120f71f760a81 483 Pfam PF00939 Sodium:sulfate symporter transmembrane region 15 474 5.5E-89 T 23-04-2016 IPR001898 Sodium/sulphate symporter GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RPE_RS06465 cd30fc9f8954d52fde2120f71f760a81 483 PANTHER PTHR10283 2 482 1.3E-152 T 23-04-2016 RPE_RS06465 cd30fc9f8954d52fde2120f71f760a81 483 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 30 474 2.2E-92 T 23-04-2016 IPR001898 Sodium/sulphate symporter GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RPE_RS06465 cd30fc9f8954d52fde2120f71f760a81 483 ProSitePatterns PS01271 Sodium:sulfate symporter family signature. 427 443 - T 23-04-2016 IPR031312 Sodium/sulphate symporter, conserved site RPE_RS00830 2dd32f7c7488339f1026a6ea45390a3a 146 PANTHER PTHR33387 1 141 2.4E-50 T 23-04-2016 RPE_RS00830 2dd32f7c7488339f1026a6ea45390a3a 146 SUPERFAMILY SSF51182 4 141 3.15E-56 T 23-04-2016 IPR011051 RmlC-like cupin domain RPE_RS00830 2dd32f7c7488339f1026a6ea45390a3a 146 Gene3D G3DSA:2.60.120.10 6 141 5.1E-53 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS00830 2dd32f7c7488339f1026a6ea45390a3a 146 Pfam PF06172 Cupin superfamily (DUF985) 11 136 4.6E-48 T 23-04-2016 IPR009327 Cupin domain of unknown function DUF985 RPE_RS13840 6348e70d0ef70d21e62248f79a931ae0 317 Gene3D G3DSA:3.20.20.70 1 226 6.5E-73 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS13840 6348e70d0ef70d21e62248f79a931ae0 317 Pfam PF01207 Dihydrouridine synthase (Dus) 1 297 3.6E-92 T 23-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RPE_RS13840 6348e70d0ef70d21e62248f79a931ae0 317 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 1 278 1.2E-90 T 23-04-2016 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 RPE_RS13840 6348e70d0ef70d21e62248f79a931ae0 317 PANTHER PTHR11082 1 317 4.0E-108 T 23-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RPE_RS13840 6348e70d0ef70d21e62248f79a931ae0 317 PANTHER PTHR11082:SF25 1 317 4.0E-108 T 23-04-2016 RPE_RS13840 6348e70d0ef70d21e62248f79a931ae0 317 PIRSF PIRSF006621 1 314 2.1E-89 T 23-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RPE_RS13840 6348e70d0ef70d21e62248f79a931ae0 317 SUPERFAMILY SSF51395 1 271 2.56E-79 T 23-04-2016 RPE_RS13840 6348e70d0ef70d21e62248f79a931ae0 317 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 77 95 - T 23-04-2016 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 RPE_RS24025 ca2b3d0013f9cddd2e72361aafcf9332 328 Pfam PF16200 C-terminal region of band_7 240 300 2.7E-7 T 23-04-2016 IPR032435 Band 7, C-terminal extension RPE_RS24025 ca2b3d0013f9cddd2e72361aafcf9332 328 SMART SM00244 21 179 2.7E-51 T 23-04-2016 IPR001107 Band 7 domain RPE_RS24025 ca2b3d0013f9cddd2e72361aafcf9332 328 PRINTS PR00721 Stomatin signature 155 173 1.5E-28 T 23-04-2016 IPR001972 Stomatin family GO:0016020 RPE_RS24025 ca2b3d0013f9cddd2e72361aafcf9332 328 PRINTS PR00721 Stomatin signature 76 97 1.5E-28 T 23-04-2016 IPR001972 Stomatin family GO:0016020 RPE_RS24025 ca2b3d0013f9cddd2e72361aafcf9332 328 PRINTS PR00721 Stomatin signature 131 154 1.5E-28 T 23-04-2016 IPR001972 Stomatin family GO:0016020 RPE_RS24025 ca2b3d0013f9cddd2e72361aafcf9332 328 PRINTS PR00721 Stomatin signature 111 128 1.5E-28 T 23-04-2016 IPR001972 Stomatin family GO:0016020 RPE_RS24025 ca2b3d0013f9cddd2e72361aafcf9332 328 PRINTS PR00721 Stomatin signature 174 195 1.5E-28 T 23-04-2016 IPR001972 Stomatin family GO:0016020 RPE_RS24025 ca2b3d0013f9cddd2e72361aafcf9332 328 SUPERFAMILY SSF117892 52 186 4.32E-40 T 23-04-2016 IPR001107 Band 7 domain RPE_RS24025 ca2b3d0013f9cddd2e72361aafcf9332 328 Pfam PF01145 SPFH domain / Band 7 family 25 195 1.3E-29 T 23-04-2016 IPR001107 Band 7 domain RPE_RS24025 ca2b3d0013f9cddd2e72361aafcf9332 328 PANTHER PTHR10264 6 300 9.0E-119 T 23-04-2016 IPR001972 Stomatin family GO:0016020 RPE_RS24025 ca2b3d0013f9cddd2e72361aafcf9332 328 PANTHER PTHR10264:SF27 6 300 9.0E-119 T 23-04-2016 RPE_RS03375 f04f6eacdb2bcdf30b3929126b38798a 204 Gene3D G3DSA:1.20.1050.10 90 188 1.7E-38 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RPE_RS03375 f04f6eacdb2bcdf30b3929126b38798a 204 SUPERFAMILY SSF47616 80 198 4.87E-32 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RPE_RS03375 f04f6eacdb2bcdf30b3929126b38798a 204 PANTHER PTHR11260:SF154 1 196 4.2E-95 T 23-04-2016 RPE_RS03375 f04f6eacdb2bcdf30b3929126b38798a 204 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 74 1.6E-9 T 23-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RPE_RS03375 f04f6eacdb2bcdf30b3929126b38798a 204 SUPERFAMILY SSF52833 1 78 4.67E-17 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS03375 f04f6eacdb2bcdf30b3929126b38798a 204 Gene3D G3DSA:3.40.30.10 1 89 7.8E-28 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS03375 f04f6eacdb2bcdf30b3929126b38798a 204 Pfam PF14497 Glutathione S-transferase, C-terminal domain 104 197 5.0E-16 T 23-04-2016 IPR004046 Glutathione S-transferase, C-terminal RPE_RS03375 f04f6eacdb2bcdf30b3929126b38798a 204 PANTHER PTHR11260 1 196 4.2E-95 T 23-04-2016 RPE_RS10580 39c2993c6740f5f05f36803c54bb0082 467 Pfam PF08245 Mur ligase middle domain 112 298 3.0E-30 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RPE_RS10580 39c2993c6740f5f05f36803c54bb0082 467 SUPERFAMILY SSF53244 317 460 2.52E-44 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RPE_RS10580 39c2993c6740f5f05f36803c54bb0082 467 SUPERFAMILY SSF51984 9 94 3.53E-29 T 23-04-2016 RPE_RS10580 39c2993c6740f5f05f36803c54bb0082 467 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 10 456 1.5E-162 T 23-04-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RPE_RS10580 39c2993c6740f5f05f36803c54bb0082 467 Gene3D G3DSA:3.40.50.720 9 95 1.9E-37 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS10580 39c2993c6740f5f05f36803c54bb0082 467 Pfam PF02875 Mur ligase family, glutamate ligase domain 318 403 1.2E-18 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RPE_RS10580 39c2993c6740f5f05f36803c54bb0082 467 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 7 465 42.007 T 23-04-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RPE_RS10580 39c2993c6740f5f05f36803c54bb0082 467 Gene3D G3DSA:3.40.1190.10 96 319 1.3E-86 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RPE_RS10580 39c2993c6740f5f05f36803c54bb0082 467 PANTHER PTHR23135 2 454 3.7E-214 T 23-04-2016 RPE_RS10580 39c2993c6740f5f05f36803c54bb0082 467 PANTHER PTHR23135:SF5 2 454 3.7E-214 T 23-04-2016 RPE_RS10580 39c2993c6740f5f05f36803c54bb0082 467 SUPERFAMILY SSF53623 93 316 3.79E-70 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RPE_RS10580 39c2993c6740f5f05f36803c54bb0082 467 Pfam PF01225 Mur ligase family, catalytic domain 10 106 6.9E-30 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RPE_RS10580 39c2993c6740f5f05f36803c54bb0082 467 Gene3D G3DSA:3.90.190.20 320 463 4.9E-48 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RPE_RS12870 973109cb71af17de720beb339d542145 391 Gene3D G3DSA:3.40.50.2000 166 354 2.4E-11 T 23-04-2016 RPE_RS12870 973109cb71af17de720beb339d542145 391 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 1 381 8.5E-72 T 23-04-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 RPE_RS12870 973109cb71af17de720beb339d542145 391 PANTHER PTHR30372 8 385 4.5E-100 T 23-04-2016 RPE_RS12870 973109cb71af17de720beb339d542145 391 Pfam PF02684 Lipid-A-disaccharide synthetase 9 367 6.8E-88 T 23-04-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 RPE_RS12870 973109cb71af17de720beb339d542145 391 SUPERFAMILY SSF53756 11 356 4.4E-27 T 23-04-2016 RPE_RS12870 973109cb71af17de720beb339d542145 391 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 6 383 32.5 T 23-04-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 RPE_RS12870 973109cb71af17de720beb339d542145 391 PANTHER PTHR30372:SF0 8 385 4.5E-100 T 23-04-2016 RPE_RS02905 ce8b7fea24347abf6170a605b6eab0b5 650 Pfam PF13537 Glutamine amidotransferase domain 47 165 1.4E-47 T 23-04-2016 IPR017932 Glutamine amidotransferase type 2 domain RPE_RS02905 ce8b7fea24347abf6170a605b6eab0b5 650 SUPERFAMILY SSF52402 483 601 1.34E-63 T 23-04-2016 RPE_RS02905 ce8b7fea24347abf6170a605b6eab0b5 650 SUPERFAMILY SSF52402 218 384 1.34E-63 T 23-04-2016 RPE_RS02905 ce8b7fea24347abf6170a605b6eab0b5 650 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 567 5.5E-154 T 23-04-2016 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|UniPathway: UPA00134 RPE_RS02905 ce8b7fea24347abf6170a605b6eab0b5 650 SUPERFAMILY SSF56235 1 222 5.92E-69 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RPE_RS02905 ce8b7fea24347abf6170a605b6eab0b5 650 Gene3D G3DSA:3.40.50.620 224 382 1.7E-73 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS02905 ce8b7fea24347abf6170a605b6eab0b5 650 Gene3D G3DSA:3.40.50.620 481 610 1.7E-73 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS02905 ce8b7fea24347abf6170a605b6eab0b5 650 PANTHER PTHR11772:SF10 478 572 1.9E-152 T 23-04-2016 RPE_RS02905 ce8b7fea24347abf6170a605b6eab0b5 650 PANTHER PTHR11772:SF10 2 388 1.9E-152 T 23-04-2016 RPE_RS02905 ce8b7fea24347abf6170a605b6eab0b5 650 Pfam PF00733 Asparagine synthase 244 626 1.6E-86 T 23-04-2016 IPR001962 Asparagine synthase GO:0004066|GO:0006529 RPE_RS02905 ce8b7fea24347abf6170a605b6eab0b5 650 PANTHER PTHR11772 478 572 1.9E-152 T 23-04-2016 RPE_RS02905 ce8b7fea24347abf6170a605b6eab0b5 650 PANTHER PTHR11772 2 388 1.9E-152 T 23-04-2016 RPE_RS02905 ce8b7fea24347abf6170a605b6eab0b5 650 Gene3D G3DSA:3.60.20.10 22 223 5.2E-78 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RPE_RS02905 ce8b7fea24347abf6170a605b6eab0b5 650 PIRSF PIRSF001589 1 646 3.7E-166 T 23-04-2016 RPE_RS15615 f99886eb39d69a2e773515474909d3c7 242 TIGRFAM TIGR02325 C_P_lyase_phnF: phosphonate metabolism transcriptional regulator PhnF 5 240 1.7E-91 T 23-04-2016 IPR012702 Phosphonate C-P lyase system, transcriptional regulator PhnF RPE_RS15615 f99886eb39d69a2e773515474909d3c7 242 Gene3D G3DSA:1.10.10.10 3 69 1.7E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS15615 f99886eb39d69a2e773515474909d3c7 242 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 75 1.3E-18 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RPE_RS15615 f99886eb39d69a2e773515474909d3c7 242 Pfam PF07702 UTRA domain 98 235 1.7E-27 T 23-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RPE_RS15615 f99886eb39d69a2e773515474909d3c7 242 SUPERFAMILY SSF64288 63 240 4.08E-37 T 23-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain RPE_RS15615 f99886eb39d69a2e773515474909d3c7 242 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 6.2E-7 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RPE_RS15615 f99886eb39d69a2e773515474909d3c7 242 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 6.2E-7 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RPE_RS15615 f99886eb39d69a2e773515474909d3c7 242 SMART SM00345 16 75 1.1E-20 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RPE_RS15615 f99886eb39d69a2e773515474909d3c7 242 PANTHER PTHR11751 124 148 3.7E-17 T 23-04-2016 RPE_RS15615 f99886eb39d69a2e773515474909d3c7 242 PANTHER PTHR11751 12 77 3.7E-17 T 23-04-2016 RPE_RS15615 f99886eb39d69a2e773515474909d3c7 242 PANTHER PTHR11751:SF292 124 148 3.7E-17 T 23-04-2016 RPE_RS15615 f99886eb39d69a2e773515474909d3c7 242 PANTHER PTHR11751:SF292 12 77 3.7E-17 T 23-04-2016 RPE_RS15615 f99886eb39d69a2e773515474909d3c7 242 Gene3D G3DSA:3.40.1410.10 70 240 2.7E-35 T 23-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain RPE_RS15615 f99886eb39d69a2e773515474909d3c7 242 SUPERFAMILY SSF46785 3 84 8.0E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS15615 f99886eb39d69a2e773515474909d3c7 242 SMART SM00866 96 236 1.8E-26 T 23-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RPE_RS23980 fa2ec3f1f9c21f99c2c5def90d260f47 475 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 14 155 1.8E-34 T 23-04-2016 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 RPE_RS23980 fa2ec3f1f9c21f99c2c5def90d260f47 475 Gene3D G3DSA:3.40.50.720 5 169 3.4E-70 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS23980 fa2ec3f1f9c21f99c2c5def90d260f47 475 Gene3D G3DSA:3.30.360.30 170 475 2.5E-152 T 23-04-2016 IPR023181 Homospermidine synthase-like, domain KEGG: 00960+2.5.1.44 RPE_RS23980 fa2ec3f1f9c21f99c2c5def90d260f47 475 Pfam PF16653 Saccharopine dehydrogenase C-terminal domain 159 440 2.0E-26 T 23-04-2016 IPR032095 Saccharopine dehydrogenase, C-terminal RPE_RS00185 5da71121d4d501e539875c88d555c544 403 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 21 385 5.0E-117 T 23-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RPE_RS00185 5da71121d4d501e539875c88d555c544 403 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 22 387 73.159 T 23-04-2016 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RPE_RS00185 5da71121d4d501e539875c88d555c544 403 PIRSF PIRSF006004 15 400 2.3E-142 T 23-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RPE_RS00185 5da71121d4d501e539875c88d555c544 403 PANTHER PTHR30544:SF5 1 177 1.9E-178 T 23-04-2016 RPE_RS00185 5da71121d4d501e539875c88d555c544 403 PANTHER PTHR30544:SF5 193 398 1.9E-178 T 23-04-2016 RPE_RS00185 5da71121d4d501e539875c88d555c544 403 Gene3D G3DSA:3.20.20.70 133 374 4.3E-12 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS00185 5da71121d4d501e539875c88d555c544 403 Pfam PF04055 Radical SAM superfamily 136 311 2.4E-15 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RPE_RS00185 5da71121d4d501e539875c88d555c544 403 SUPERFAMILY SSF102114 129 343 1.57E-11 T 23-04-2016 RPE_RS00185 5da71121d4d501e539875c88d555c544 403 PANTHER PTHR30544 1 177 1.9E-178 T 23-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RPE_RS00185 5da71121d4d501e539875c88d555c544 403 PANTHER PTHR30544 193 398 1.9E-178 T 23-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RPE_RS16175 245486743dbf85e755a9395131aea400 260 Gene3D G3DSA:3.40.50.720 4 257 1.0E-75 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS16175 245486743dbf85e755a9395131aea400 260 SUPERFAMILY SSF51735 6 258 2.63E-72 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS16175 245486743dbf85e755a9395131aea400 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 1.5E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS16175 245486743dbf85e755a9395131aea400 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 1.5E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS16175 245486743dbf85e755a9395131aea400 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 1.5E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS16175 245486743dbf85e755a9395131aea400 260 Pfam PF00106 short chain dehydrogenase 8 198 2.2E-53 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS16175 245486743dbf85e755a9395131aea400 260 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RPE_RS16175 245486743dbf85e755a9395131aea400 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 2.8E-39 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS16175 245486743dbf85e755a9395131aea400 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 2.8E-39 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS16175 245486743dbf85e755a9395131aea400 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 2.8E-39 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS16175 245486743dbf85e755a9395131aea400 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.8E-39 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS16175 245486743dbf85e755a9395131aea400 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 220 240 2.8E-39 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS16175 245486743dbf85e755a9395131aea400 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 2.8E-39 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS16175 245486743dbf85e755a9395131aea400 260 PANTHER PTHR24322 11 139 2.3E-50 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS16175 245486743dbf85e755a9395131aea400 260 PANTHER PTHR24322 155 187 2.3E-50 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS08130 2e96e9c4d19126a3b9812dc9e32f75e0 121 PANTHER PTHR34310:SF3 3 118 5.8E-61 T 23-04-2016 RPE_RS08130 2e96e9c4d19126a3b9812dc9e32f75e0 121 Pfam PF04248 Domain of unknown function (DUF427) 19 111 5.6E-30 T 23-04-2016 IPR007361 Domain of unknown function DUF427 RPE_RS08130 2e96e9c4d19126a3b9812dc9e32f75e0 121 PANTHER PTHR34310 3 118 5.8E-61 T 23-04-2016 RPE_RS13110 0bd7699b880ed7d983cee6c042d463a9 464 SUPERFAMILY SSF52922 326 461 6.94E-45 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RPE_RS13110 0bd7699b880ed7d983cee6c042d463a9 464 SMART SM00861 142 317 9.2E-63 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RPE_RS13110 0bd7699b880ed7d983cee6c042d463a9 464 Gene3D G3DSA:3.40.50.970 141 332 7.2E-94 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS13110 0bd7699b880ed7d983cee6c042d463a9 464 PANTHER PTHR11624 131 464 2.2E-195 T 23-04-2016 IPR033247 Transketolase family RPE_RS13110 0bd7699b880ed7d983cee6c042d463a9 464 SUPERFAMILY SSF52518 143 331 1.37E-67 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS13110 0bd7699b880ed7d983cee6c042d463a9 464 Gene3D G3DSA:3.40.50.920 333 462 4.2E-49 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RPE_RS13110 0bd7699b880ed7d983cee6c042d463a9 464 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 23-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site RPE_RS13110 0bd7699b880ed7d983cee6c042d463a9 464 Pfam PF00364 Biotin-requiring enzyme 4 77 1.8E-20 T 23-04-2016 IPR000089 Biotin/lipoyl attachment RPE_RS13110 0bd7699b880ed7d983cee6c042d463a9 464 SUPERFAMILY SSF51230 1 96 7.46E-28 T 23-04-2016 IPR011053 Single hybrid motif RPE_RS13110 0bd7699b880ed7d983cee6c042d463a9 464 Pfam PF02780 Transketolase, C-terminal domain 332 454 1.4E-43 T 23-04-2016 IPR033248 Transketolase, C-terminal domain RPE_RS13110 0bd7699b880ed7d983cee6c042d463a9 464 Pfam PF02779 Transketolase, pyrimidine binding domain 143 316 1.2E-50 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RPE_RS13110 0bd7699b880ed7d983cee6c042d463a9 464 PANTHER PTHR11624:SF11 131 464 2.2E-195 T 23-04-2016 RPE_RS13110 0bd7699b880ed7d983cee6c042d463a9 464 Gene3D G3DSA:2.40.50.100 2 96 1.4E-33 T 23-04-2016 RPE_RS00995 4edb475046e351e1058c61cedd184681 248 SUPERFAMILY SSF64376 20 105 1.96E-23 T 23-04-2016 IPR007393 Domain of unknown function DUF448 RPE_RS00995 4edb475046e351e1058c61cedd184681 248 PANTHER PTHR34215 3 217 3.4E-34 T 23-04-2016 RPE_RS00995 4edb475046e351e1058c61cedd184681 248 Gene3D G3DSA:3.30.1230.10 18 107 9.7E-27 T 23-04-2016 IPR007393 Domain of unknown function DUF448 RPE_RS00995 4edb475046e351e1058c61cedd184681 248 Pfam PF04296 Protein of unknown function (DUF448) 23 93 1.3E-20 T 23-04-2016 IPR007393 Domain of unknown function DUF448 RPE_RS00995 4edb475046e351e1058c61cedd184681 248 PANTHER PTHR34215:SF1 3 217 3.4E-34 T 23-04-2016 RPE_RS00995 4edb475046e351e1058c61cedd184681 248 SUPERFAMILY SSF55315 105 195 2.83E-9 T 23-04-2016 IPR029064 50S ribosomal protein L30e-like RPE_RS01345 a8760b3c5651253106ee63ee095defc8 216 Gene3D G3DSA:3.40.50.620 20 202 1.3E-38 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS01345 a8760b3c5651253106ee63ee095defc8 216 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 19 202 19.872 T 23-04-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: REACT_11193|UniPathway: UPA00253 RPE_RS01345 a8760b3c5651253106ee63ee095defc8 216 PANTHER PTHR39321 16 168 1.7E-38 T 23-04-2016 RPE_RS01345 a8760b3c5651253106ee63ee095defc8 216 PANTHER PTHR39321 184 208 1.7E-38 T 23-04-2016 RPE_RS01345 a8760b3c5651253106ee63ee095defc8 216 Pfam PF01467 Cytidylyltransferase-like 23 163 9.6E-17 T 23-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RPE_RS01345 a8760b3c5651253106ee63ee095defc8 216 SUPERFAMILY SSF52374 17 203 2.35E-36 T 23-04-2016 RPE_RS18880 73a2e36fac33431cd61c3935d6ca98a8 380 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 211 7.5E-15 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RPE_RS18880 73a2e36fac33431cd61c3935d6ca98a8 380 TIGRFAM TIGR03203 pimD_small: pimeloyl-CoA dehydrogenase, small subunit 2 379 3.2E-223 T 23-04-2016 IPR017616 Pimeloyl-CoA dehydrogenase, small subunit RPE_RS18880 73a2e36fac33431cd61c3935d6ca98a8 380 PANTHER PTHR10909:SF145 1 374 1.4E-101 T 23-04-2016 RPE_RS18880 73a2e36fac33431cd61c3935d6ca98a8 380 SUPERFAMILY SSF56645 1 224 2.09E-51 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RPE_RS18880 73a2e36fac33431cd61c3935d6ca98a8 380 Gene3D G3DSA:1.20.140.10 217 373 8.9E-33 T 23-04-2016 RPE_RS18880 73a2e36fac33431cd61c3935d6ca98a8 380 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 233 375 8.2E-26 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS18880 73a2e36fac33431cd61c3935d6ca98a8 380 SUPERFAMILY SSF47203 235 375 4.83E-34 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS18880 73a2e36fac33431cd61c3935d6ca98a8 380 Gene3D G3DSA:2.40.110.10 122 216 3.3E-21 T 23-04-2016 RPE_RS18880 73a2e36fac33431cd61c3935d6ca98a8 380 Gene3D G3DSA:1.10.540.10 1 117 2.7E-20 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS18880 73a2e36fac33431cd61c3935d6ca98a8 380 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 117 3.9E-17 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS18880 73a2e36fac33431cd61c3935d6ca98a8 380 PANTHER PTHR10909 1 374 1.4E-101 T 23-04-2016 RPE_RS04540 0307f2ab9e9768b7e75eeaf3d96b4e3f 712 PANTHER PTHR10587 359 619 1.0E-107 T 23-04-2016 RPE_RS04540 0307f2ab9e9768b7e75eeaf3d96b4e3f 712 PANTHER PTHR10587 40 309 1.0E-107 T 23-04-2016 RPE_RS04540 0307f2ab9e9768b7e75eeaf3d96b4e3f 712 Gene3D G3DSA:3.90.550.10 230 386 4.2E-4 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS04540 0307f2ab9e9768b7e75eeaf3d96b4e3f 712 PANTHER PTHR10587:SF63 359 619 1.0E-107 T 23-04-2016 RPE_RS04540 0307f2ab9e9768b7e75eeaf3d96b4e3f 712 PANTHER PTHR10587:SF63 40 309 1.0E-107 T 23-04-2016 RPE_RS04540 0307f2ab9e9768b7e75eeaf3d96b4e3f 712 SUPERFAMILY SSF53448 138 421 5.96E-26 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS04540 0307f2ab9e9768b7e75eeaf3d96b4e3f 712 Pfam PF13632 Glycosyl transferase family group 2 233 444 1.1E-18 T 23-04-2016 IPR001173 Glycosyltransferase 2-like RPE_RS04540 0307f2ab9e9768b7e75eeaf3d96b4e3f 712 Hamap MF_01072 Glucans biosynthesis glucosyltransferase H [mdoH]. 1 635 47.588 T 23-04-2016 IPR023725 Glucan biosynthesis glucosyltransferase H GO:0016758 UniPathway: UPA00637 RPE_RS03350 f9000faf8b14c6be2d3c9a7f20dd3331 195 PANTHER PTHR33169:SF4 1 189 2.4E-72 T 23-04-2016 RPE_RS03350 f9000faf8b14c6be2d3c9a7f20dd3331 195 Pfam PF10400 Virulence activator alpha C-term 92 174 4.0E-19 T 23-04-2016 IPR018309 Transcription regulator PadR, C-terminal RPE_RS03350 f9000faf8b14c6be2d3c9a7f20dd3331 195 SUPERFAMILY SSF46785 5 176 5.6E-42 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS03350 f9000faf8b14c6be2d3c9a7f20dd3331 195 Gene3D G3DSA:1.10.10.10 2 86 1.0E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS03350 f9000faf8b14c6be2d3c9a7f20dd3331 195 PANTHER PTHR33169 1 189 2.4E-72 T 23-04-2016 RPE_RS03350 f9000faf8b14c6be2d3c9a7f20dd3331 195 Pfam PF03551 Transcriptional regulator PadR-like family 7 80 5.5E-14 T 23-04-2016 IPR005149 Transcription regulator PadR, N-terminal RPE_RS02335 218077a5d5d2554eb7f13353534f57b8 843 PANTHER PTHR24423:SF486 462 843 5.2E-115 T 23-04-2016 RPE_RS02335 218077a5d5d2554eb7f13353534f57b8 843 PANTHER PTHR24423:SF486 51 333 5.2E-115 T 23-04-2016 RPE_RS02335 218077a5d5d2554eb7f13353534f57b8 843 PRINTS PR00344 Bacterial sensor protein C-terminal signature 762 776 3.1E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS02335 218077a5d5d2554eb7f13353534f57b8 843 PRINTS PR00344 Bacterial sensor protein C-terminal signature 819 832 3.1E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS02335 218077a5d5d2554eb7f13353534f57b8 843 PRINTS PR00344 Bacterial sensor protein C-terminal signature 795 813 3.1E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS02335 218077a5d5d2554eb7f13353534f57b8 843 Gene3D G3DSA:3.30.450.20 481 590 3.2E-7 T 23-04-2016 RPE_RS02335 218077a5d5d2554eb7f13353534f57b8 843 Gene3D G3DSA:3.30.450.20 228 335 9.0E-8 T 23-04-2016 RPE_RS02335 218077a5d5d2554eb7f13353534f57b8 843 Gene3D G3DSA:3.30.450.20 345 465 2.4E-6 T 23-04-2016 RPE_RS02335 218077a5d5d2554eb7f13353534f57b8 843 Pfam PF00512 His Kinase A (phospho-acceptor) domain 612 679 1.9E-17 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS02335 218077a5d5d2554eb7f13353534f57b8 843 SUPERFAMILY SSF55874 668 833 1.06E-42 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS02335 218077a5d5d2554eb7f13353534f57b8 843 SMART SM00091 235 301 17.0 T 23-04-2016 IPR000014 PAS domain RPE_RS02335 218077a5d5d2554eb7f13353534f57b8 843 SMART SM00091 350 420 27.0 T 23-04-2016 IPR000014 PAS domain RPE_RS02335 218077a5d5d2554eb7f13353534f57b8 843 SMART SM00091 478 545 2.0 T 23-04-2016 IPR000014 PAS domain RPE_RS02335 218077a5d5d2554eb7f13353534f57b8 843 SMART SM00388 611 679 1.2E-17 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS02335 218077a5d5d2554eb7f13353534f57b8 843 SMART SM00387 725 835 1.5E-32 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS02335 218077a5d5d2554eb7f13353534f57b8 843 Gene3D G3DSA:1.10.287.130 603 674 1.7E-14 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS02335 218077a5d5d2554eb7f13353534f57b8 843 Pfam PF12860 PAS fold 356 467 5.6E-14 T 23-04-2016 RPE_RS02335 218077a5d5d2554eb7f13353534f57b8 843 Pfam PF12860 PAS fold 484 595 1.5E-9 T 23-04-2016 RPE_RS02335 218077a5d5d2554eb7f13353534f57b8 843 PANTHER PTHR24423 462 843 5.2E-115 T 23-04-2016 RPE_RS02335 218077a5d5d2554eb7f13353534f57b8 843 PANTHER PTHR24423 51 333 5.2E-115 T 23-04-2016 RPE_RS02335 218077a5d5d2554eb7f13353534f57b8 843 Gene3D G3DSA:3.30.565.10 681 839 1.7E-40 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS02335 218077a5d5d2554eb7f13353534f57b8 843 SUPERFAMILY SSF47384 595 679 1.92E-17 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS02335 218077a5d5d2554eb7f13353534f57b8 843 SUPERFAMILY SSF55785 462 579 4.19E-8 T 23-04-2016 IPR000014 PAS domain RPE_RS02335 218077a5d5d2554eb7f13353534f57b8 843 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 726 833 6.7E-22 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS02335 218077a5d5d2554eb7f13353534f57b8 843 SUPERFAMILY SSF55785 222 327 7.33E-6 T 23-04-2016 IPR000014 PAS domain RPE_RS02335 218077a5d5d2554eb7f13353534f57b8 843 SUPERFAMILY SSF55785 334 446 4.36E-5 T 23-04-2016 IPR000014 PAS domain RPE_RS23920 f9ed436271f91f544b2edca035122444 409 PANTHER PTHR13693 2 401 3.8E-226 T 23-04-2016 RPE_RS23920 f9ed436271f91f544b2edca035122444 409 TIGRFAM TIGR01821 5aminolev_synth: 5-aminolevulinic acid synthase 1 401 4.7E-205 T 23-04-2016 IPR010961 Tetrapyrrole biosynthesis, 5-aminolevulinic acid synthase GO:0003870|GO:0030170|GO:0033014 KEGG: 00260+2.3.1.37|KEGG: 00860+2.3.1.37|MetaCyc: PWY-5189|MetaCyc: PWY-7536|Reactome: REACT_9431|UniPathway: UPA00251 RPE_RS23920 f9ed436271f91f544b2edca035122444 409 PANTHER PTHR13693:SF57 2 401 3.8E-226 T 23-04-2016 RPE_RS23920 f9ed436271f91f544b2edca035122444 409 Gene3D G3DSA:3.40.640.10 64 280 1.5E-86 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS23920 f9ed436271f91f544b2edca035122444 409 Gene3D G3DSA:3.90.1150.10 281 395 9.4E-28 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS23920 f9ed436271f91f544b2edca035122444 409 SUPERFAMILY SSF53383 2 398 1.2E-117 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS23920 f9ed436271f91f544b2edca035122444 409 Pfam PF00155 Aminotransferase class I and II 46 390 8.7E-74 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RPE_RS23920 f9ed436271f91f544b2edca035122444 409 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 244 253 - T 23-04-2016 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 RPE_RS20790 23a977e8da29411f1cb1040be3b793a7 561 Gene3D G3DSA:3.30.450.20 27 181 5.7E-29 T 23-04-2016 RPE_RS20790 23a977e8da29411f1cb1040be3b793a7 561 Pfam PF17200 Single Cache domain 2 41 188 6.1E-27 T 23-04-2016 IPR033480 Single Cache domain 2 RPE_RS20790 23a977e8da29411f1cb1040be3b793a7 561 PANTHER PTHR32089:SF56 279 558 3.3E-192 T 23-04-2016 RPE_RS20790 23a977e8da29411f1cb1040be3b793a7 561 PANTHER PTHR32089 32 246 3.3E-192 T 23-04-2016 RPE_RS20790 23a977e8da29411f1cb1040be3b793a7 561 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 428 457 2.3E-21 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS20790 23a977e8da29411f1cb1040be3b793a7 561 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 399 426 2.3E-21 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS20790 23a977e8da29411f1cb1040be3b793a7 561 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 476 505 2.3E-21 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS20790 23a977e8da29411f1cb1040be3b793a7 561 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 322 351 2.3E-21 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS20790 23a977e8da29411f1cb1040be3b793a7 561 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 370 554 7.3E-32 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS20790 23a977e8da29411f1cb1040be3b793a7 561 Gene3D G3DSA:1.10.287.950 317 524 2.1E-44 T 23-04-2016 RPE_RS20790 23a977e8da29411f1cb1040be3b793a7 561 SMART SM01049 35 127 2.9E-20 T 23-04-2016 IPR033480 Single Cache domain 2 RPE_RS20790 23a977e8da29411f1cb1040be3b793a7 561 PANTHER PTHR32089 279 558 3.3E-192 T 23-04-2016 RPE_RS20790 23a977e8da29411f1cb1040be3b793a7 561 PANTHER PTHR32089:SF56 32 246 3.3E-192 T 23-04-2016 RPE_RS20790 23a977e8da29411f1cb1040be3b793a7 561 SMART SM00283 301 555 2.4E-38 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS20790 23a977e8da29411f1cb1040be3b793a7 561 SUPERFAMILY SSF58104 307 554 7.19E-58 T 23-04-2016 RPE_RS20790 23a977e8da29411f1cb1040be3b793a7 561 SUPERFAMILY SSF58104 239 266 7.19E-58 T 23-04-2016 RPE_RS20790 23a977e8da29411f1cb1040be3b793a7 561 SMART SM00304 211 264 3.3E-7 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS20790 23a977e8da29411f1cb1040be3b793a7 561 Pfam PF00672 HAMP domain 193 259 1.3E-11 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS22100 e1d216b9abedf41ab169cb0fe31d363a 278 Gene3D G3DSA:3.30.420.10 73 211 1.1E-43 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RPE_RS22100 e1d216b9abedf41ab169cb0fe31d363a 278 PANTHER PTHR10954 34 255 6.3E-63 T 23-04-2016 IPR001352 Ribonuclease HII/HIII GO:0003723|GO:0004523 RPE_RS22100 e1d216b9abedf41ab169cb0fe31d363a 278 Hamap MF_00052_B Ribonuclease HII [rnhB]. 72 250 34.803 T 23-04-2016 IPR022898 Ribonuclease HII GO:0004523 RPE_RS22100 e1d216b9abedf41ab169cb0fe31d363a 278 SUPERFAMILY SSF53098 62 257 1.09E-64 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RPE_RS22100 e1d216b9abedf41ab169cb0fe31d363a 278 Pfam PF01351 Ribonuclease HII 74 249 3.6E-38 T 23-04-2016 IPR024567 Ribonuclease HII/HIII domain RPE_RS14370 ccc79a48151dfccb1a301729a5dbc86e 100 SUPERFAMILY SSF54909 1 97 4.54E-34 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RPE_RS14370 ccc79a48151dfccb1a301729a5dbc86e 100 Gene3D G3DSA:3.30.70.900 1 97 3.2E-18 T 23-04-2016 RPE_RS14370 ccc79a48151dfccb1a301729a5dbc86e 100 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 76 4.9E-14 T 23-04-2016 IPR007138 Antibiotic biosynthesis monooxygenase domain RPE_RS19715 8802541a5e7d1738f0da23e4a3a0d0ce 118 PANTHER PTHR12589 1 118 5.0E-43 T 23-04-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein RPE_RS19715 8802541a5e7d1738f0da23e4a3a0d0ce 118 TIGRFAM TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD 2 93 2.6E-28 T 23-04-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein RPE_RS19715 8802541a5e7d1738f0da23e4a3a0d0ce 118 Gene3D G3DSA:3.30.479.10 1 117 1.9E-39 T 23-04-2016 RPE_RS19715 8802541a5e7d1738f0da23e4a3a0d0ce 118 PIRSF PIRSF006113 1 118 1.5E-38 T 23-04-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein RPE_RS19715 8802541a5e7d1738f0da23e4a3a0d0ce 118 SUPERFAMILY SSF55620 1 117 8.89E-39 T 23-04-2016 RPE_RS19715 8802541a5e7d1738f0da23e4a3a0d0ce 118 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 2 117 7.0E-36 T 23-04-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein RPE_RS15190 adcf90686d5379c0f46d87619a3e6380 139 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 1 132 2.3E-21 T 23-04-2016 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RPE_RS15190 adcf90686d5379c0f46d87619a3e6380 139 SUPERFAMILY SSF56214 1 131 4.71E-28 T 23-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RPE_RS15190 adcf90686d5379c0f46d87619a3e6380 139 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 8 103 4.0E-50 T 23-04-2016 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RPE_RS15190 adcf90686d5379c0f46d87619a3e6380 139 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 1 133 4.7E-26 T 23-04-2016 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RPE_RS15190 adcf90686d5379c0f46d87619a3e6380 139 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 3 133 24.127 T 23-04-2016 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RPE_RS15190 adcf90686d5379c0f46d87619a3e6380 139 Gene3D G3DSA:3.90.470.20 1 131 1.5E-36 T 23-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RPE_RS15190 adcf90686d5379c0f46d87619a3e6380 139 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 4 103 1.3E-18 T 23-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RPE_RS05905 b814b5cc6bf2bcac861a89caa1924bd5 309 Pfam PF00669 Bacterial flagellin N-terminal helical region 6 139 9.0E-21 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RPE_RS05905 b814b5cc6bf2bcac861a89caa1924bd5 309 SUPERFAMILY SSF64518 1 309 1.02E-54 T 23-04-2016 RPE_RS05905 b814b5cc6bf2bcac861a89caa1924bd5 309 Pfam PF00700 Bacterial flagellin C-terminal helical region 223 308 2.4E-20 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RPE_RS05905 b814b5cc6bf2bcac861a89caa1924bd5 309 Gene3D G3DSA:1.20.1330.10 53 178 2.9E-11 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RPE_RS05905 b814b5cc6bf2bcac861a89caa1924bd5 309 Gene3D G3DSA:1.20.1330.10 211 258 2.9E-11 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RPE_RS14315 4d907f2458e62d25e141613d2f1a78bd 362 Hamap MF_01665 Heme A synthase [ctaA]. 10 343 25.99 T 23-04-2016 IPR023754 Heme A synthase, type 2 GO:0006784|GO:0016020|GO:0016627|GO:0055114 UniPathway: UPA00269 RPE_RS14315 4d907f2458e62d25e141613d2f1a78bd 362 PANTHER PTHR23289:SF1 9 346 6.1E-190 T 23-04-2016 RPE_RS14315 4d907f2458e62d25e141613d2f1a78bd 362 PANTHER PTHR23289 9 346 6.1E-190 T 23-04-2016 RPE_RS14315 4d907f2458e62d25e141613d2f1a78bd 362 Pfam PF02628 Cytochrome oxidase assembly protein 15 332 8.7E-109 T 23-04-2016 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 UniPathway: UPA00269 RPE_RS22085 12b9a60e354a245b2a0fe8629f10d5f1 552 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 15 37 6.6E-6 T 23-04-2016 RPE_RS22085 12b9a60e354a245b2a0fe8629f10d5f1 552 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 181 196 6.6E-6 T 23-04-2016 RPE_RS22085 12b9a60e354a245b2a0fe8629f10d5f1 552 Pfam PF13450 NAD(P)-binding Rossmann-like domain 18 61 3.4E-6 T 23-04-2016 RPE_RS22085 12b9a60e354a245b2a0fe8629f10d5f1 552 SUPERFAMILY SSF54862 453 551 5.28E-28 T 23-04-2016 RPE_RS22085 12b9a60e354a245b2a0fe8629f10d5f1 552 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 449 550 1.2E-48 T 23-04-2016 IPR007859 ETF-QO/FixX GO:0051536|GO:0055114 RPE_RS22085 12b9a60e354a245b2a0fe8629f10d5f1 552 SUPERFAMILY SSF51905 8 212 1.47E-51 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS22085 12b9a60e354a245b2a0fe8629f10d5f1 552 SUPERFAMILY SSF51905 309 451 1.47E-51 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS22085 12b9a60e354a245b2a0fe8629f10d5f1 552 PANTHER PTHR10617:SF107 8 476 2.1E-231 T 23-04-2016 IPR007859 ETF-QO/FixX GO:0051536|GO:0055114 RPE_RS22085 12b9a60e354a245b2a0fe8629f10d5f1 552 Gene3D G3DSA:3.50.50.60 14 52 3.8E-45 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS22085 12b9a60e354a245b2a0fe8629f10d5f1 552 Gene3D G3DSA:3.50.50.60 310 448 3.8E-45 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS22085 12b9a60e354a245b2a0fe8629f10d5f1 552 Gene3D G3DSA:3.50.50.60 119 224 3.8E-45 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS22085 12b9a60e354a245b2a0fe8629f10d5f1 552 PANTHER PTHR10617 8 476 2.1E-231 T 23-04-2016 RPE_RS22085 12b9a60e354a245b2a0fe8629f10d5f1 552 SUPERFAMILY SSF54373 214 309 1.33E-35 T 23-04-2016 RPE_RS23740 44fffebc19334a02761e3b1c3524ae04 544 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 267 321 - T 23-04-2016 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS23740 44fffebc19334a02761e3b1c3524ae04 544 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 40 489 7.9E-159 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS23740 44fffebc19334a02761e3b1c3524ae04 544 SUPERFAMILY SSF81442 27 543 2.35E-219 T 23-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS23740 44fffebc19334a02761e3b1c3524ae04 544 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 32 543 2.3E-221 T 23-04-2016 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005507|GO:0005886|GO:0006810|GO:0022900|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS23740 44fffebc19334a02761e3b1c3524ae04 544 PRINTS PR01165 Cytochrome c oxidase subunit I signature 107 131 2.0E-147 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS23740 44fffebc19334a02761e3b1c3524ae04 544 PRINTS PR01165 Cytochrome c oxidase subunit I signature 185 203 2.0E-147 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS23740 44fffebc19334a02761e3b1c3524ae04 544 PRINTS PR01165 Cytochrome c oxidase subunit I signature 31 56 2.0E-147 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS23740 44fffebc19334a02761e3b1c3524ae04 544 PRINTS PR01165 Cytochrome c oxidase subunit I signature 79 102 2.0E-147 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS23740 44fffebc19334a02761e3b1c3524ae04 544 PRINTS PR01165 Cytochrome c oxidase subunit I signature 265 286 2.0E-147 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS23740 44fffebc19334a02761e3b1c3524ae04 544 PRINTS PR01165 Cytochrome c oxidase subunit I signature 370 388 2.0E-147 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS23740 44fffebc19334a02761e3b1c3524ae04 544 PRINTS PR01165 Cytochrome c oxidase subunit I signature 448 469 2.0E-147 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS23740 44fffebc19334a02761e3b1c3524ae04 544 PRINTS PR01165 Cytochrome c oxidase subunit I signature 335 356 2.0E-147 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS23740 44fffebc19334a02761e3b1c3524ae04 544 PRINTS PR01165 Cytochrome c oxidase subunit I signature 398 417 2.0E-147 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS23740 44fffebc19334a02761e3b1c3524ae04 544 PRINTS PR01165 Cytochrome c oxidase subunit I signature 154 166 2.0E-147 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS23740 44fffebc19334a02761e3b1c3524ae04 544 PRINTS PR01165 Cytochrome c oxidase subunit I signature 311 326 2.0E-147 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS23740 44fffebc19334a02761e3b1c3524ae04 544 PRINTS PR01165 Cytochrome c oxidase subunit I signature 214 233 2.0E-147 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS23740 44fffebc19334a02761e3b1c3524ae04 544 PANTHER PTHR10422 17 544 0.0 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS23740 44fffebc19334a02761e3b1c3524ae04 544 PANTHER PTHR10422:SF27 17 544 0.0 T 23-04-2016 RPE_RS23740 44fffebc19334a02761e3b1c3524ae04 544 Gene3D G3DSA:1.20.210.10 43 511 9.9E-236 T 23-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS06245 6387e3955bc74ded38e394c60be0155d 199 PANTHER PTHR30302:SF1 8 175 4.5E-68 T 23-04-2016 RPE_RS06245 6387e3955bc74ded38e394c60be0155d 199 Pfam PF01750 Hydrogenase maturation protease 30 158 7.6E-41 T 23-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RPE_RS06245 6387e3955bc74ded38e394c60be0155d 199 PANTHER PTHR30302 8 175 4.5E-68 T 23-04-2016 RPE_RS06245 6387e3955bc74ded38e394c60be0155d 199 SUPERFAMILY SSF53163 12 169 8.89E-45 T 23-04-2016 IPR023430 Peptidase HybD-like domain RPE_RS06245 6387e3955bc74ded38e394c60be0155d 199 PRINTS PR00446 Hydrogen uptake protein signature 25 36 3.7E-37 T 23-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RPE_RS06245 6387e3955bc74ded38e394c60be0155d 199 PRINTS PR00446 Hydrogen uptake protein signature 77 93 3.7E-37 T 23-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RPE_RS06245 6387e3955bc74ded38e394c60be0155d 199 PRINTS PR00446 Hydrogen uptake protein signature 45 62 3.7E-37 T 23-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RPE_RS06245 6387e3955bc74ded38e394c60be0155d 199 PRINTS PR00446 Hydrogen uptake protein signature 13 25 3.7E-37 T 23-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RPE_RS06245 6387e3955bc74ded38e394c60be0155d 199 PRINTS PR00446 Hydrogen uptake protein signature 66 76 3.7E-37 T 23-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RPE_RS06245 6387e3955bc74ded38e394c60be0155d 199 TIGRFAM TIGR00140 hupD: hydrogenase expression/formation protein 13 164 2.9E-62 T 23-04-2016 IPR004419 Peptidase A31, hydrogenase expression/formation protein GO:0016485|GO:0046872 RPE_RS06245 6387e3955bc74ded38e394c60be0155d 199 Gene3D G3DSA:3.40.50.1450 12 168 8.9E-50 T 23-04-2016 IPR023430 Peptidase HybD-like domain RPE_RS06245 6387e3955bc74ded38e394c60be0155d 199 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 14 159 3.3E-45 T 23-04-2016 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 RPE_RS10410 fd09ded1abd9caf0e22b1b2ed089e697 445 SUPERFAMILY SSF51905 4 353 1.85E-28 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS10410 fd09ded1abd9caf0e22b1b2ed089e697 445 Gene3D G3DSA:3.50.50.60 10 127 1.6E-14 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS10410 fd09ded1abd9caf0e22b1b2ed089e697 445 PANTHER PTHR22912 2 200 6.0E-24 T 23-04-2016 RPE_RS10410 fd09ded1abd9caf0e22b1b2ed089e697 445 PANTHER PTHR22912 217 327 6.0E-24 T 23-04-2016 RPE_RS10410 fd09ded1abd9caf0e22b1b2ed089e697 445 Gene3D G3DSA:3.50.50.60 128 355 3.0E-32 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS10410 fd09ded1abd9caf0e22b1b2ed089e697 445 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 121 139 8.3E-13 T 23-04-2016 RPE_RS10410 fd09ded1abd9caf0e22b1b2ed089e697 445 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 180 198 8.3E-13 T 23-04-2016 RPE_RS10410 fd09ded1abd9caf0e22b1b2ed089e697 445 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 304 326 8.3E-13 T 23-04-2016 RPE_RS10410 fd09ded1abd9caf0e22b1b2ed089e697 445 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 14 33 8.3E-13 T 23-04-2016 RPE_RS10410 fd09ded1abd9caf0e22b1b2ed089e697 445 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 180 205 4.8E-6 T 23-04-2016 RPE_RS10410 fd09ded1abd9caf0e22b1b2ed089e697 445 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 319 326 4.8E-6 T 23-04-2016 RPE_RS10410 fd09ded1abd9caf0e22b1b2ed089e697 445 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 13 35 4.8E-6 T 23-04-2016 RPE_RS10410 fd09ded1abd9caf0e22b1b2ed089e697 445 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 13 348 1.0E-51 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS15970 a16dfae046146f92e3161430a7068646 314 PANTHER PTHR24567:SF37 104 310 1.5E-54 T 23-04-2016 RPE_RS15970 a16dfae046146f92e3161430a7068646 314 PANTHER PTHR24567 104 310 1.5E-54 T 23-04-2016 RPE_RS06815 01a8d86c48c57bc425c7d47b6c9219dc 255 SUPERFAMILY SSF81490 6 40 4.97E-15 T 23-04-2016 RPE_RS06815 01a8d86c48c57bc425c7d47b6c9219dc 255 TIGRFAM TIGR01150 puhA: photosynthetic reaction center H subunit 6 249 9.7E-80 T 23-04-2016 IPR005652 Photosynthetic reaction centre, H subunit GO:0019684|GO:0030077|GO:0045156 RPE_RS06815 01a8d86c48c57bc425c7d47b6c9219dc 255 Gene3D G3DSA:4.10.540.10 6 112 2.0E-43 T 23-04-2016 IPR015810 Photosynthetic reaction centre, H subunit, N-terminal GO:0019684|GO:0030077|GO:0045156 RPE_RS06815 01a8d86c48c57bc425c7d47b6c9219dc 255 Gene3D G3DSA:3.90.50.10 113 254 3.5E-52 T 23-04-2016 IPR014747 Bacterial photosynthetic reaction centre, H-chain, C-terminal GO:0019684|GO:0030077|GO:0045156 RPE_RS06815 01a8d86c48c57bc425c7d47b6c9219dc 255 Pfam PF05239 PRC-barrel domain 143 210 3.2E-9 T 23-04-2016 IPR027275 PRC-barrel domain RPE_RS06815 01a8d86c48c57bc425c7d47b6c9219dc 255 Pfam PF03967 Photosynthetic reaction centre, H-chain N-terminal region 5 132 6.1E-53 T 23-04-2016 IPR015810 Photosynthetic reaction centre, H subunit, N-terminal GO:0019684|GO:0030077|GO:0045156 RPE_RS06815 01a8d86c48c57bc425c7d47b6c9219dc 255 SUPERFAMILY SSF50346 33 251 5.3E-65 T 23-04-2016 IPR011033 PRC-barrel-like RPE_RS00650 213857f0aeeabe6924d2f925b1ceca03 101 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 68 19.085 T 23-04-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS00650 213857f0aeeabe6924d2f925b1ceca03 101 Gene3D G3DSA:2.30.170.40 2 77 1.2E-30 T 23-04-2016 RPE_RS00650 213857f0aeeabe6924d2f925b1ceca03 101 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 58 1.5E-23 T 23-04-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS00650 213857f0aeeabe6924d2f925b1ceca03 101 PANTHER PTHR13528 1 91 4.2E-30 T 23-04-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 RPE_RS00650 213857f0aeeabe6924d2f925b1ceca03 101 SUPERFAMILY SSF143800 1 81 5.3E-27 T 23-04-2016 RPE_RS00650 213857f0aeeabe6924d2f925b1ceca03 101 Pfam PF00830 Ribosomal L28 family 3 61 2.0E-23 T 23-04-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 RPE_RS11450 4b204cbe003c673d57d9fb71b86f7c7b 225 SUPERFAMILY SSF103642 203 223 2.29E-8 T 23-04-2016 RPE_RS11450 4b204cbe003c673d57d9fb71b86f7c7b 225 Pfam PF03695 Uncharacterised protein family (UPF0149) 10 169 2.2E-24 T 23-04-2016 IPR011978 Uncharacterised protein family UPF0149 RPE_RS11450 4b204cbe003c673d57d9fb71b86f7c7b 225 SUPERFAMILY SSF101327 8 153 1.57E-21 T 23-04-2016 IPR011978 Uncharacterised protein family UPF0149 RPE_RS11450 4b204cbe003c673d57d9fb71b86f7c7b 225 Gene3D G3DSA:3.10.450.50 190 223 8.7E-13 T 23-04-2016 IPR032710 NTF2-like domain RPE_RS11450 4b204cbe003c673d57d9fb71b86f7c7b 225 Pfam PF02810 SEC-C motif 206 223 9.2E-11 T 23-04-2016 IPR004027 SEC-C motif RPE_RS11450 4b204cbe003c673d57d9fb71b86f7c7b 225 PANTHER PTHR33747 57 224 4.4E-14 T 23-04-2016 RPE_RS11450 4b204cbe003c673d57d9fb71b86f7c7b 225 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 8 182 7.8E-41 T 23-04-2016 IPR011978 Uncharacterised protein family UPF0149 RPE_RS19170 996637d2468f2835ff75053624924d06 160 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 11 146 4.3E-24 T 23-04-2016 IPR008136 CinA, C-terminal RPE_RS19170 996637d2468f2835ff75053624924d06 160 SUPERFAMILY SSF142433 3 158 3.53E-43 T 23-04-2016 IPR008136 CinA, C-terminal RPE_RS19170 996637d2468f2835ff75053624924d06 160 Gene3D G3DSA:3.90.950.20 5 158 4.1E-45 T 23-04-2016 IPR008136 CinA, C-terminal RPE_RS19170 996637d2468f2835ff75053624924d06 160 PANTHER PTHR13939 4 155 3.5E-50 T 23-04-2016 RPE_RS19170 996637d2468f2835ff75053624924d06 160 Pfam PF02464 Competence-damaged protein 6 157 2.5E-43 T 23-04-2016 IPR008136 CinA, C-terminal RPE_RS09375 4d97be3987820b39f740accb6a709244 663 SMART SM01358 54 287 1.6E-22 T 23-04-2016 IPR032255 Helical bimodular sensor domain RPE_RS09375 4d97be3987820b39f740accb6a709244 663 SMART SM00283 410 657 2.2E-40 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS09375 4d97be3987820b39f740accb6a709244 663 PANTHER PTHR32089 253 347 8.1E-143 T 23-04-2016 RPE_RS09375 4d97be3987820b39f740accb6a709244 663 SMART SM00304 312 365 1.3E-6 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS09375 4d97be3987820b39f740accb6a709244 663 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 476 656 7.5E-33 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS09375 4d97be3987820b39f740accb6a709244 663 Gene3D G3DSA:1.10.287.950 427 626 1.6E-44 T 23-04-2016 RPE_RS09375 4d97be3987820b39f740accb6a709244 663 PANTHER PTHR32089:SF40 253 347 8.1E-143 T 23-04-2016 RPE_RS09375 4d97be3987820b39f740accb6a709244 663 PANTHER PTHR32089:SF40 381 660 8.1E-143 T 23-04-2016 RPE_RS09375 4d97be3987820b39f740accb6a709244 663 PANTHER PTHR32089 381 660 8.1E-143 T 23-04-2016 RPE_RS09375 4d97be3987820b39f740accb6a709244 663 SUPERFAMILY SSF58104 409 656 2.22E-60 T 23-04-2016 RPE_RS09375 4d97be3987820b39f740accb6a709244 663 SUPERFAMILY SSF58104 340 367 2.22E-60 T 23-04-2016 RPE_RS09375 4d97be3987820b39f740accb6a709244 663 Pfam PF00672 HAMP domain 293 355 5.9E-12 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS17505 aa99ad25ede520ebffe5db777dfa7d80 323 PANTHER PTHR10366 4 312 2.6E-140 T 23-04-2016 RPE_RS17505 aa99ad25ede520ebffe5db777dfa7d80 323 Gene3D G3DSA:3.40.50.720 3 172 1.2E-53 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS17505 aa99ad25ede520ebffe5db777dfa7d80 323 Pfam PF16363 GDP-mannose 4,6 dehydratase 6 302 9.0E-46 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS17505 aa99ad25ede520ebffe5db777dfa7d80 323 Gene3D G3DSA:3.90.25.10 173 313 3.6E-50 T 23-04-2016 RPE_RS17505 aa99ad25ede520ebffe5db777dfa7d80 323 PANTHER PTHR10366:SF399 4 312 2.6E-140 T 23-04-2016 RPE_RS17505 aa99ad25ede520ebffe5db777dfa7d80 323 SUPERFAMILY SSF51735 1 310 1.31E-82 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS20765 a088bbe1f7e57da7a2783c17febb5741 559 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 420 554 2.9E-26 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS20765 a088bbe1f7e57da7a2783c17febb5741 559 SMART SM00086 208 250 1.3E-5 T 23-04-2016 IPR001610 PAC motif RPE_RS20765 a088bbe1f7e57da7a2783c17febb5741 559 SMART SM00086 86 128 9.7E-6 T 23-04-2016 IPR001610 PAC motif RPE_RS20765 a088bbe1f7e57da7a2783c17febb5741 559 SMART SM00086 330 372 0.18 T 23-04-2016 IPR001610 PAC motif RPE_RS20765 a088bbe1f7e57da7a2783c17febb5741 559 Gene3D G3DSA:3.30.450.20 146 249 1.6E-25 T 23-04-2016 RPE_RS20765 a088bbe1f7e57da7a2783c17febb5741 559 Gene3D G3DSA:3.30.450.20 23 127 4.5E-24 T 23-04-2016 RPE_RS20765 a088bbe1f7e57da7a2783c17febb5741 559 Gene3D G3DSA:3.30.450.20 268 370 2.1E-20 T 23-04-2016 RPE_RS20765 a088bbe1f7e57da7a2783c17febb5741 559 SUPERFAMILY SSF55785 146 251 5.06E-27 T 23-04-2016 IPR000014 PAS domain RPE_RS20765 a088bbe1f7e57da7a2783c17febb5741 559 PANTHER PTHR24422 6 339 1.9E-201 T 23-04-2016 RPE_RS20765 a088bbe1f7e57da7a2783c17febb5741 559 PANTHER PTHR24422 423 558 1.9E-201 T 23-04-2016 RPE_RS20765 a088bbe1f7e57da7a2783c17febb5741 559 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 267 372 4.5E-10 T 23-04-2016 IPR000014 PAS domain RPE_RS20765 a088bbe1f7e57da7a2783c17febb5741 559 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 142 251 5.1E-14 T 23-04-2016 IPR000014 PAS domain RPE_RS20765 a088bbe1f7e57da7a2783c17febb5741 559 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 21 129 1.4E-12 T 23-04-2016 IPR000014 PAS domain RPE_RS20765 a088bbe1f7e57da7a2783c17febb5741 559 SUPERFAMILY SSF58104 378 552 1.96E-45 T 23-04-2016 RPE_RS20765 a088bbe1f7e57da7a2783c17febb5741 559 PANTHER PTHR24422:SF12 6 339 1.9E-201 T 23-04-2016 RPE_RS20765 a088bbe1f7e57da7a2783c17febb5741 559 PANTHER PTHR24422:SF12 423 558 1.9E-201 T 23-04-2016 RPE_RS20765 a088bbe1f7e57da7a2783c17febb5741 559 SMART SM00283 366 557 2.0E-5 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS20765 a088bbe1f7e57da7a2783c17febb5741 559 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 374 403 6.8E-5 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS20765 a088bbe1f7e57da7a2783c17febb5741 559 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 473 502 6.8E-5 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS20765 a088bbe1f7e57da7a2783c17febb5741 559 Pfam PF08447 PAS fold 280 365 7.5E-13 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 RPE_RS20765 a088bbe1f7e57da7a2783c17febb5741 559 Pfam PF08447 PAS fold 36 121 2.1E-12 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 RPE_RS20765 a088bbe1f7e57da7a2783c17febb5741 559 Pfam PF08447 PAS fold 158 243 2.8E-15 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 RPE_RS20765 a088bbe1f7e57da7a2783c17febb5741 559 Gene3D G3DSA:1.10.287.950 378 557 7.2E-38 T 23-04-2016 RPE_RS20765 a088bbe1f7e57da7a2783c17febb5741 559 SMART SM00091 255 324 6.5 T 23-04-2016 IPR000014 PAS domain RPE_RS20765 a088bbe1f7e57da7a2783c17febb5741 559 SMART SM00091 135 203 1.7 T 23-04-2016 IPR000014 PAS domain RPE_RS20765 a088bbe1f7e57da7a2783c17febb5741 559 SMART SM00091 15 80 2.3 T 23-04-2016 IPR000014 PAS domain RPE_RS20765 a088bbe1f7e57da7a2783c17febb5741 559 SUPERFAMILY SSF55785 23 129 1.17E-24 T 23-04-2016 IPR000014 PAS domain RPE_RS20765 a088bbe1f7e57da7a2783c17febb5741 559 SUPERFAMILY SSF55785 268 370 4.01E-23 T 23-04-2016 IPR000014 PAS domain RPE_RS05730 d7637c2072d20df923b92d8c6ce5e4b9 115 PANTHER PTHR36455 2 101 1.2E-44 T 23-04-2016 RPE_RS05730 d7637c2072d20df923b92d8c6ce5e4b9 115 PANTHER PTHR36455:SF1 2 101 1.2E-44 T 23-04-2016 RPE_RS05730 d7637c2072d20df923b92d8c6ce5e4b9 115 Pfam PF05717 IS66 Orf2 like protein 9 106 2.3E-37 T 23-04-2016 IPR008878 Transposase IS66, Orf2 RPE_RS20055 d7637c2072d20df923b92d8c6ce5e4b9 115 PANTHER PTHR36455 2 101 1.2E-44 T 23-04-2016 RPE_RS20055 d7637c2072d20df923b92d8c6ce5e4b9 115 PANTHER PTHR36455:SF1 2 101 1.2E-44 T 23-04-2016 RPE_RS20055 d7637c2072d20df923b92d8c6ce5e4b9 115 Pfam PF05717 IS66 Orf2 like protein 9 106 2.3E-37 T 23-04-2016 IPR008878 Transposase IS66, Orf2 RPE_RS17620 d7637c2072d20df923b92d8c6ce5e4b9 115 PANTHER PTHR36455 2 101 1.2E-44 T 23-04-2016 RPE_RS17620 d7637c2072d20df923b92d8c6ce5e4b9 115 PANTHER PTHR36455:SF1 2 101 1.2E-44 T 23-04-2016 RPE_RS17620 d7637c2072d20df923b92d8c6ce5e4b9 115 Pfam PF05717 IS66 Orf2 like protein 9 106 2.3E-37 T 23-04-2016 IPR008878 Transposase IS66, Orf2 RPE_RS05100 d7637c2072d20df923b92d8c6ce5e4b9 115 PANTHER PTHR36455 2 101 1.2E-44 T 23-04-2016 RPE_RS05100 d7637c2072d20df923b92d8c6ce5e4b9 115 PANTHER PTHR36455:SF1 2 101 1.2E-44 T 23-04-2016 RPE_RS05100 d7637c2072d20df923b92d8c6ce5e4b9 115 Pfam PF05717 IS66 Orf2 like protein 9 106 2.3E-37 T 23-04-2016 IPR008878 Transposase IS66, Orf2 RPE_RS12220 d7637c2072d20df923b92d8c6ce5e4b9 115 PANTHER PTHR36455 2 101 1.2E-44 T 23-04-2016 RPE_RS12220 d7637c2072d20df923b92d8c6ce5e4b9 115 PANTHER PTHR36455:SF1 2 101 1.2E-44 T 23-04-2016 RPE_RS12220 d7637c2072d20df923b92d8c6ce5e4b9 115 Pfam PF05717 IS66 Orf2 like protein 9 106 2.3E-37 T 23-04-2016 IPR008878 Transposase IS66, Orf2 RPE_RS11395 991eb2edfa6a509559e07ed315beab07 105 Pfam PF12840 Helix-turn-helix domain 17 75 1.2E-13 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS11395 991eb2edfa6a509559e07ed315beab07 105 SUPERFAMILY SSF46785 2 95 1.08E-16 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS11395 991eb2edfa6a509559e07ed315beab07 105 Gene3D G3DSA:1.10.10.10 11 94 5.2E-17 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS11395 991eb2edfa6a509559e07ed315beab07 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 52 67 1.1E-7 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RPE_RS11395 991eb2edfa6a509559e07ed315beab07 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 18 33 1.1E-7 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RPE_RS11395 991eb2edfa6a509559e07ed315beab07 105 SMART SM00418 16 96 2.6E-10 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RPE_RS11395 991eb2edfa6a509559e07ed315beab07 105 PANTHER PTHR33154 1 99 2.9E-41 T 23-04-2016 RPE_RS11395 991eb2edfa6a509559e07ed315beab07 105 PANTHER PTHR33154:SF2 1 99 2.9E-41 T 23-04-2016 RPE_RS16530 fd2b68cd71e2b2c23e41b7dadd1355f3 305 PANTHER PTHR10657 9 153 5.5E-13 T 23-04-2016 RPE_RS16530 fd2b68cd71e2b2c23e41b7dadd1355f3 305 Gene3D G3DSA:3.10.50.40 167 285 1.0E-4 T 23-04-2016 RPE_RS16530 fd2b68cd71e2b2c23e41b7dadd1355f3 305 Pfam PF09312 SurA N-terminal domain 29 133 6.4E-10 T 23-04-2016 IPR015391 SurA N-terminal RPE_RS16530 fd2b68cd71e2b2c23e41b7dadd1355f3 305 PANTHER PTHR10657:SF11 9 153 5.5E-13 T 23-04-2016 RPE_RS16530 fd2b68cd71e2b2c23e41b7dadd1355f3 305 SUPERFAMILY SSF109998 29 196 4.71E-31 T 23-04-2016 IPR027304 Trigger factor/SurA domain RPE_RS19110 ccc677782c0a666b3bec7733673256f2 414 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 130 2.8E-20 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS19110 ccc677782c0a666b3bec7733673256f2 414 SUPERFAMILY SSF56645 2 252 5.63E-69 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RPE_RS19110 ccc677782c0a666b3bec7733673256f2 414 PANTHER PTHR10909 1 412 5.3E-245 T 23-04-2016 RPE_RS19110 ccc677782c0a666b3bec7733673256f2 414 Gene3D G3DSA:1.20.140.10 230 398 3.2E-30 T 23-04-2016 RPE_RS19110 ccc677782c0a666b3bec7733673256f2 414 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 134 228 1.4E-21 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RPE_RS19110 ccc677782c0a666b3bec7733673256f2 414 SUPERFAMILY SSF47203 240 394 8.54E-23 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS19110 ccc677782c0a666b3bec7733673256f2 414 Gene3D G3DSA:1.10.540.10 1 132 3.4E-20 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS19110 ccc677782c0a666b3bec7733673256f2 414 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 240 392 2.8E-28 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS19110 ccc677782c0a666b3bec7733673256f2 414 PANTHER PTHR10909:SF335 1 412 5.3E-245 T 23-04-2016 RPE_RS19110 ccc677782c0a666b3bec7733673256f2 414 Gene3D G3DSA:2.40.110.10 133 229 8.9E-36 T 23-04-2016 RPE_RS13890 592c01d3ab74809721f5fb3d348ac780 165 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 118 140 7.9E-27 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 RPE_RS13890 592c01d3ab74809721f5fb3d348ac780 165 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 3 21 7.9E-27 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 RPE_RS13890 592c01d3ab74809721f5fb3d348ac780 165 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 91 107 7.9E-27 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 RPE_RS13890 592c01d3ab74809721f5fb3d348ac780 165 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 21 42 7.9E-27 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 RPE_RS13890 592c01d3ab74809721f5fb3d348ac780 165 PANTHER PTHR21342 1 164 3.0E-59 T 23-04-2016 RPE_RS13890 592c01d3ab74809721f5fb3d348ac780 165 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 3 164 31.253 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 RPE_RS13890 592c01d3ab74809721f5fb3d348ac780 165 Pfam PF01467 Cytidylyltransferase-like 6 139 1.8E-12 T 23-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RPE_RS13890 592c01d3ab74809721f5fb3d348ac780 165 Gene3D G3DSA:3.40.50.620 2 163 1.3E-47 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS13890 592c01d3ab74809721f5fb3d348ac780 165 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 4 163 4.8E-52 T 23-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 RPE_RS13890 592c01d3ab74809721f5fb3d348ac780 165 SUPERFAMILY SSF52374 3 162 1.98E-38 T 23-04-2016 RPE_RS13890 592c01d3ab74809721f5fb3d348ac780 165 PANTHER PTHR21342:SF1 1 164 3.0E-59 T 23-04-2016 RPE_RS13890 592c01d3ab74809721f5fb3d348ac780 165 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 4 57 4.1E-17 T 23-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RPE_RS02525 ca80a58c82f61456b529eff8ddd50a40 230 SUPERFAMILY SSF47616 81 213 5.54E-21 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RPE_RS02525 ca80a58c82f61456b529eff8ddd50a40 230 PANTHER PTHR11260:SF286 1 216 1.2E-105 T 23-04-2016 RPE_RS02525 ca80a58c82f61456b529eff8ddd50a40 230 Pfam PF00043 Glutathione S-transferase, C-terminal domain 145 206 6.0E-6 T 23-04-2016 IPR004046 Glutathione S-transferase, C-terminal RPE_RS02525 ca80a58c82f61456b529eff8ddd50a40 230 Gene3D G3DSA:1.20.1050.10 97 225 3.2E-33 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RPE_RS02525 ca80a58c82f61456b529eff8ddd50a40 230 Gene3D G3DSA:3.40.30.10 1 96 3.5E-20 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS02525 ca80a58c82f61456b529eff8ddd50a40 230 Pfam PF13417 Glutathione S-transferase, N-terminal domain 4 76 7.4E-12 T 23-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RPE_RS02525 ca80a58c82f61456b529eff8ddd50a40 230 SUPERFAMILY SSF52833 1 107 1.48E-17 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS02525 ca80a58c82f61456b529eff8ddd50a40 230 PANTHER PTHR11260 1 216 1.2E-105 T 23-04-2016 RPE_RS14390 d3dd7f81d5858fe4dff5ce3365065c8e 398 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 282 370 1.4E-15 T 23-04-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 RPE_RS14390 d3dd7f81d5858fe4dff5ce3365065c8e 398 SMART SM00936 282 372 5.3E-24 T 23-04-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 RPE_RS14390 d3dd7f81d5858fe4dff5ce3365065c8e 398 SUPERFAMILY SSF56601 27 282 5.85E-71 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS14390 d3dd7f81d5858fe4dff5ce3365065c8e 398 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 149 162 5.8E-11 T 23-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RPE_RS14390 d3dd7f81d5858fe4dff5ce3365065c8e 398 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 122 139 5.8E-11 T 23-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RPE_RS14390 d3dd7f81d5858fe4dff5ce3365065c8e 398 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 64 75 5.8E-11 T 23-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RPE_RS14390 d3dd7f81d5858fe4dff5ce3365065c8e 398 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 34 258 1.1E-59 T 23-04-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 RPE_RS14390 d3dd7f81d5858fe4dff5ce3365065c8e 398 PANTHER PTHR21581:SF3 35 398 1.5E-100 T 23-04-2016 RPE_RS14390 d3dd7f81d5858fe4dff5ce3365065c8e 398 Gene3D G3DSA:3.40.710.10 34 281 9.3E-83 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS14390 d3dd7f81d5858fe4dff5ce3365065c8e 398 SUPERFAMILY SSF69189 282 373 2.55E-18 T 23-04-2016 IPR015956 Penicillin-binding protein-associated GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 RPE_RS14390 d3dd7f81d5858fe4dff5ce3365065c8e 398 Gene3D G3DSA:2.60.410.10 282 371 2.2E-15 T 23-04-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 RPE_RS14390 d3dd7f81d5858fe4dff5ce3365065c8e 398 PANTHER PTHR21581 35 398 1.5E-100 T 23-04-2016 RPE_RS00710 8073fe16eb4ab337d4cc08fa33a9a739 326 Gene3D G3DSA:1.10.150.130 10 102 3.8E-26 T 23-04-2016 IPR023109 Integrase/recombinase, N-terminal RPE_RS00710 8073fe16eb4ab337d4cc08fa33a9a739 326 PANTHER PTHR30349 10 326 2.0E-93 T 23-04-2016 RPE_RS00710 8073fe16eb4ab337d4cc08fa33a9a739 326 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 12 93 3.8E-17 T 23-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 RPE_RS00710 8073fe16eb4ab337d4cc08fa33a9a739 326 SUPERFAMILY SSF56349 11 314 2.15E-49 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RPE_RS00710 8073fe16eb4ab337d4cc08fa33a9a739 326 Gene3D G3DSA:1.10.443.10 117 316 3.4E-48 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 RPE_RS00710 8073fe16eb4ab337d4cc08fa33a9a739 326 PANTHER PTHR30349:SF5 10 326 2.0E-93 T 23-04-2016 RPE_RS00710 8073fe16eb4ab337d4cc08fa33a9a739 326 Pfam PF00589 Phage integrase family 120 309 1.6E-40 T 23-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RPE_RS00710 8073fe16eb4ab337d4cc08fa33a9a739 326 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 8 324 57.632 T 23-04-2016 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 RPE_RS00710 8073fe16eb4ab337d4cc08fa33a9a739 326 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 8 324 27.412 T 23-04-2016 IPR023009 Tyrosine recombinase XerC/XerD RPE_RS15770 54bf98960ad4f3213740f8e0aee9d907 161 PANTHER PTHR33202 19 153 4.1E-57 T 23-04-2016 RPE_RS15770 54bf98960ad4f3213740f8e0aee9d907 161 Gene3D G3DSA:1.10.10.10 28 108 2.8E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS15770 54bf98960ad4f3213740f8e0aee9d907 161 PANTHER PTHR33202:SF3 19 153 4.1E-57 T 23-04-2016 RPE_RS15770 54bf98960ad4f3213740f8e0aee9d907 161 Pfam PF01475 Ferric uptake regulator family 36 130 9.0E-19 T 23-04-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 RPE_RS15770 54bf98960ad4f3213740f8e0aee9d907 161 SUPERFAMILY SSF46785 29 152 1.91E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS13210 8231511e4471e141b3f19bb08a9dc776 136 PANTHER PTHR12910 21 134 2.2E-58 T 23-04-2016 IPR007763 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 GO:0008137|GO:0009055|GO:0016020 RPE_RS13210 8231511e4471e141b3f19bb08a9dc776 136 PANTHER PTHR12910:SF3 21 134 2.2E-58 T 23-04-2016 RPE_RS13210 8231511e4471e141b3f19bb08a9dc776 136 Pfam PF05071 NADH ubiquinone oxidoreductase subunit NDUFA12 27 134 1.3E-26 T 23-04-2016 IPR007763 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 GO:0008137|GO:0009055|GO:0016020 RPE_RS00130 b45a3e62fd96dc62ba7a042dccb904fb 571 Pfam PF07940 Heparinase II/III-like protein 297 546 5.0E-69 T 23-04-2016 IPR012480 Heparinase II/III-like MetaCyc: PWY-7651 RPE_RS18810 2b649a9a8b5060e23b79eaf2e097e191 545 SMART SM00382 314 506 5.6E-15 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS18810 2b649a9a8b5060e23b79eaf2e097e191 545 SMART SM00382 37 237 3.3E-18 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS18810 2b649a9a8b5060e23b79eaf2e097e191 545 SUPERFAMILY SSF52540 8 259 2.77E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18810 2b649a9a8b5060e23b79eaf2e097e191 545 Gene3D G3DSA:3.40.50.300 5 262 1.0E-74 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18810 2b649a9a8b5060e23b79eaf2e097e191 545 Gene3D G3DSA:3.40.50.300 277 530 7.8E-72 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18810 2b649a9a8b5060e23b79eaf2e097e191 545 PANTHER PTHR24220:SF574 10 414 4.3E-194 T 23-04-2016 RPE_RS18810 2b649a9a8b5060e23b79eaf2e097e191 545 SUPERFAMILY SSF52540 279 528 2.82E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18810 2b649a9a8b5060e23b79eaf2e097e191 545 Pfam PF00005 ABC transporter 29 187 1.4E-27 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS18810 2b649a9a8b5060e23b79eaf2e097e191 545 Pfam PF00005 ABC transporter 306 457 5.4E-25 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS18810 2b649a9a8b5060e23b79eaf2e097e191 545 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 239 269 9.7E-7 T 23-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RPE_RS18810 2b649a9a8b5060e23b79eaf2e097e191 545 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 508 537 0.0024 T 23-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RPE_RS18810 2b649a9a8b5060e23b79eaf2e097e191 545 PANTHER PTHR24220 10 414 4.3E-194 T 23-04-2016 RPE_RS18810 2b649a9a8b5060e23b79eaf2e097e191 545 ProSitePatterns PS00211 ABC transporters family signature. 429 443 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS18810 2b649a9a8b5060e23b79eaf2e097e191 545 ProSitePatterns PS00211 ABC transporters family signature. 160 174 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS00970 d2e062eddf40d30b4ada3a209fec61a2 721 SUPERFAMILY SSF54791 555 641 5.31E-22 T 23-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 RPE_RS00970 d2e062eddf40d30b4ada3a209fec61a2 721 PIRSF PIRSF005499 1 720 2.1E-296 T 23-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RPE_RS00970 d2e062eddf40d30b4ada3a209fec61a2 721 Pfam PF03725 3' exoribonuclease family, domain 2 147 209 1.2E-10 T 23-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 RPE_RS00970 d2e062eddf40d30b4ada3a209fec61a2 721 Gene3D G3DSA:2.40.50.140 628 707 5.8E-23 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS00970 d2e062eddf40d30b4ada3a209fec61a2 721 Gene3D G3DSA:3.30.230.70 6 225 2.7E-83 T 23-04-2016 IPR027408 PNPase/RNase PH domain RPE_RS00970 d2e062eddf40d30b4ada3a209fec61a2 721 Gene3D G3DSA:3.30.230.70 313 543 4.9E-88 T 23-04-2016 IPR027408 PNPase/RNase PH domain RPE_RS00970 d2e062eddf40d30b4ada3a209fec61a2 721 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 241 321 2.2E-19 T 23-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RPE_RS00970 d2e062eddf40d30b4ada3a209fec61a2 721 SUPERFAMILY SSF50249 621 704 1.49E-19 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS00970 d2e062eddf40d30b4ada3a209fec61a2 721 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 3 694 30.453 T 23-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RPE_RS00970 d2e062eddf40d30b4ada3a209fec61a2 721 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 11 692 0.0 T 23-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RPE_RS00970 d2e062eddf40d30b4ada3a209fec61a2 721 PANTHER PTHR11252 1 715 0.0 T 23-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RPE_RS00970 d2e062eddf40d30b4ada3a209fec61a2 721 SUPERFAMILY SSF54211 294 489 6.58E-49 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RPE_RS00970 d2e062eddf40d30b4ada3a209fec61a2 721 SUPERFAMILY SSF55666 451 549 1.64E-26 T 23-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 RPE_RS00970 d2e062eddf40d30b4ada3a209fec61a2 721 Pfam PF01138 3' exoribonuclease family, domain 1 14 144 1.9E-21 T 23-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 RPE_RS00970 d2e062eddf40d30b4ada3a209fec61a2 721 Pfam PF01138 3' exoribonuclease family, domain 1 325 457 1.5E-23 T 23-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 RPE_RS00970 d2e062eddf40d30b4ada3a209fec61a2 721 SMART SM00316 621 691 2.3E-21 T 23-04-2016 IPR022967 RNA-binding domain, S1 RPE_RS00970 d2e062eddf40d30b4ada3a209fec61a2 721 Pfam PF00575 S1 RNA binding domain 620 691 3.8E-16 T 23-04-2016 IPR003029 S1 domain GO:0003676 RPE_RS00970 d2e062eddf40d30b4ada3a209fec61a2 721 PANTHER PTHR11252:SF0 1 715 0.0 T 23-04-2016 RPE_RS00970 d2e062eddf40d30b4ada3a209fec61a2 721 Pfam PF00013 KH domain 557 614 1.6E-10 T 23-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 RPE_RS00970 d2e062eddf40d30b4ada3a209fec61a2 721 SUPERFAMILY SSF55666 145 234 1.4E-27 T 23-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 RPE_RS00970 d2e062eddf40d30b4ada3a209fec61a2 721 Gene3D G3DSA:3.30.1370.10 552 627 9.7E-25 T 23-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 RPE_RS00970 d2e062eddf40d30b4ada3a209fec61a2 721 SMART SM00322 553 618 2.0E-12 T 23-04-2016 IPR004087 K Homology domain GO:0003676 RPE_RS00970 d2e062eddf40d30b4ada3a209fec61a2 721 SUPERFAMILY SSF54211 4 144 5.01E-51 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RPE_RS00970 d2e062eddf40d30b4ada3a209fec61a2 721 Gene3D G3DSA:1.10.10.400 240 312 2.5E-21 T 23-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RPE_RS08995 2dbf910dea81845d6cb0490f10cf245c 931 Pfam PF00672 HAMP domain 331 397 2.8E-11 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS08995 2dbf910dea81845d6cb0490f10cf245c 931 Gene3D G3DSA:3.30.565.10 595 774 1.0E-37 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS08995 2dbf910dea81845d6cb0490f10cf245c 931 SUPERFAMILY SSF55785 394 525 1.68E-12 T 23-04-2016 IPR000014 PAS domain RPE_RS08995 2dbf910dea81845d6cb0490f10cf245c 931 Pfam PF02743 Cache domain 48 272 2.4E-13 T 23-04-2016 IPR033479 Double Cache domain 1 RPE_RS08995 2dbf910dea81845d6cb0490f10cf245c 931 SUPERFAMILY SSF55874 599 770 6.81E-38 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS08995 2dbf910dea81845d6cb0490f10cf245c 931 SUPERFAMILY SSF52172 790 907 2.99E-25 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS08995 2dbf910dea81845d6cb0490f10cf245c 931 SMART SM00388 542 608 1.7E-5 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS08995 2dbf910dea81845d6cb0490f10cf245c 931 Gene3D G3DSA:3.30.450.20 97 223 3.7E-27 T 23-04-2016 RPE_RS08995 2dbf910dea81845d6cb0490f10cf245c 931 Gene3D G3DSA:1.10.287.130 535 594 9.6E-5 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS08995 2dbf910dea81845d6cb0490f10cf245c 931 SMART SM00448 789 902 2.3E-20 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS08995 2dbf910dea81845d6cb0490f10cf245c 931 Pfam PF00512 His Kinase A (phospho-acceptor) domain 544 606 1.5E-6 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS08995 2dbf910dea81845d6cb0490f10cf245c 931 PANTHER PTHR24423 392 908 6.9E-197 T 23-04-2016 RPE_RS08995 2dbf910dea81845d6cb0490f10cf245c 931 PRINTS PR00344 Bacterial sensor protein C-terminal signature 701 715 2.1E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS08995 2dbf910dea81845d6cb0490f10cf245c 931 PRINTS PR00344 Bacterial sensor protein C-terminal signature 732 750 2.1E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS08995 2dbf910dea81845d6cb0490f10cf245c 931 PRINTS PR00344 Bacterial sensor protein C-terminal signature 719 729 2.1E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS08995 2dbf910dea81845d6cb0490f10cf245c 931 PRINTS PR00344 Bacterial sensor protein C-terminal signature 756 769 2.1E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS08995 2dbf910dea81845d6cb0490f10cf245c 931 SMART SM00304 350 401 4.5E-6 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS08995 2dbf910dea81845d6cb0490f10cf245c 931 PANTHER PTHR24423:SF438 3 9 6.9E-197 T 23-04-2016 RPE_RS08995 2dbf910dea81845d6cb0490f10cf245c 931 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 406 533 2.0E-11 T 23-04-2016 IPR000014 PAS domain RPE_RS08995 2dbf910dea81845d6cb0490f10cf245c 931 Pfam PF13426 PAS domain 419 526 1.1E-8 T 23-04-2016 IPR000014 PAS domain RPE_RS08995 2dbf910dea81845d6cb0490f10cf245c 931 SMART SM00387 649 772 6.9E-26 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS08995 2dbf910dea81845d6cb0490f10cf245c 931 SUPERFAMILY SSF103190 78 224 1.62E-31 T 23-04-2016 IPR029151 Periplasmic sensor domain-like RPE_RS08995 2dbf910dea81845d6cb0490f10cf245c 931 PANTHER PTHR24423:SF438 392 908 6.9E-197 T 23-04-2016 RPE_RS08995 2dbf910dea81845d6cb0490f10cf245c 931 SUPERFAMILY SSF47384 533 605 1.92E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS08995 2dbf910dea81845d6cb0490f10cf245c 931 Pfam PF00072 Response regulator receiver domain 791 902 4.2E-14 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS08995 2dbf910dea81845d6cb0490f10cf245c 931 Gene3D G3DSA:3.30.450.20 404 525 3.0E-15 T 23-04-2016 RPE_RS08995 2dbf910dea81845d6cb0490f10cf245c 931 Gene3D G3DSA:3.40.50.2300 788 907 1.5E-30 T 23-04-2016 RPE_RS08995 2dbf910dea81845d6cb0490f10cf245c 931 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 650 770 2.2E-16 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS08995 2dbf910dea81845d6cb0490f10cf245c 931 PANTHER PTHR24423 3 9 6.9E-197 T 23-04-2016 RPE_RS16440 48770244f18be9682c6769e136093274 392 SUPERFAMILY SSF47819 303 366 7.19E-12 T 23-04-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 RPE_RS16440 48770244f18be9682c6769e136093274 392 PANTHER PTHR12124 3 295 1.2E-63 T 23-04-2016 RPE_RS16440 48770244f18be9682c6769e136093274 392 SUPERFAMILY SSF47819 189 296 2.4E-22 T 23-04-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 RPE_RS16440 48770244f18be9682c6769e136093274 392 Pfam PF01612 3'-5' exonuclease 3 169 1.9E-36 T 23-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RPE_RS16440 48770244f18be9682c6769e136093274 392 SMART SM00474 1 170 9.2E-31 T 23-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RPE_RS16440 48770244f18be9682c6769e136093274 392 Hamap MF_01899 Ribonuclease D [rnd]. 1 364 44.877 T 23-04-2016 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 RPE_RS16440 48770244f18be9682c6769e136093274 392 TIGRFAM TIGR01388 rnd: ribonuclease D 3 363 1.2E-121 T 23-04-2016 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 RPE_RS16440 48770244f18be9682c6769e136093274 392 Gene3D G3DSA:3.30.420.10 3 184 6.6E-19 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RPE_RS16440 48770244f18be9682c6769e136093274 392 SUPERFAMILY SSF53098 3 203 5.31E-67 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RPE_RS16440 48770244f18be9682c6769e136093274 392 Pfam PF00570 HRDC domain 211 277 9.3E-12 T 23-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 RPE_RS16215 2ca50126ceb3b87ca94c9984c4a2255d 80 Gene3D G3DSA:3.40.1620.10 1 40 2.0E-11 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RPE_RS16215 2ca50126ceb3b87ca94c9984c4a2255d 80 SUPERFAMILY SSF143120 1 46 1.83E-10 T 23-04-2016 RPE_RS16215 2ca50126ceb3b87ca94c9984c4a2255d 80 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 3 41 3.9E-10 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RPE_RS16215 2ca50126ceb3b87ca94c9984c4a2255d 80 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 67 2.0E-12 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RPE_RS02710 afea4f7914cc21f5c8e0da0663c6c208 203 SUPERFAMILY SSF88659 133 194 2.99E-14 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS02710 afea4f7914cc21f5c8e0da0663c6c208 203 Gene3D G3DSA:1.10.1740.10 20 130 5.1E-28 T 23-04-2016 RPE_RS02710 afea4f7914cc21f5c8e0da0663c6c208 203 PANTHER PTHR30173 12 194 4.7E-108 T 23-04-2016 RPE_RS02710 afea4f7914cc21f5c8e0da0663c6c208 203 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 37 192 7.6E-31 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS02710 afea4f7914cc21f5c8e0da0663c6c208 203 Gene3D G3DSA:1.10.10.10 131 195 1.2E-18 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS02710 afea4f7914cc21f5c8e0da0663c6c208 203 PANTHER PTHR30173:SF19 12 194 4.7E-108 T 23-04-2016 RPE_RS02710 afea4f7914cc21f5c8e0da0663c6c208 203 SUPERFAMILY SSF88946 21 121 4.71E-23 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS02710 afea4f7914cc21f5c8e0da0663c6c208 203 Pfam PF04542 Sigma-70 region 2 41 107 3.5E-15 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS02710 afea4f7914cc21f5c8e0da0663c6c208 203 Pfam PF08281 Sigma-70, region 4 138 189 1.0E-11 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS04270 9d08ea3b3baefcb1874d83204e6c5f21 405 Gene3D G3DSA:3.40.50.2300 155 305 1.1E-15 T 23-04-2016 RPE_RS04270 9d08ea3b3baefcb1874d83204e6c5f21 405 PANTHER PTHR30483 1 404 2.9E-211 T 23-04-2016 RPE_RS04270 9d08ea3b3baefcb1874d83204e6c5f21 405 Pfam PF13458 Periplasmic binding protein 30 367 1.5E-82 T 23-04-2016 IPR028081 Leucine-binding protein domain RPE_RS04270 9d08ea3b3baefcb1874d83204e6c5f21 405 Gene3D G3DSA:3.40.50.2300 25 154 2.4E-27 T 23-04-2016 RPE_RS04270 9d08ea3b3baefcb1874d83204e6c5f21 405 Gene3D G3DSA:3.40.50.2300 306 346 2.4E-27 T 23-04-2016 RPE_RS04270 9d08ea3b3baefcb1874d83204e6c5f21 405 SUPERFAMILY SSF53822 30 402 4.45E-88 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RPE_RS04270 9d08ea3b3baefcb1874d83204e6c5f21 405 PANTHER PTHR30483:SF17 1 404 2.9E-211 T 23-04-2016 RPE_RS01625 0c173a7d6d7bc6e92b383d7c14e2b024 324 Pfam PF12706 Beta-lactamase superfamily domain 82 282 8.8E-40 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS01625 0c173a7d6d7bc6e92b383d7c14e2b024 324 PANTHER PTHR15032:SF4 1 324 5.2E-100 T 23-04-2016 RPE_RS01625 0c173a7d6d7bc6e92b383d7c14e2b024 324 PANTHER PTHR15032 1 324 5.2E-100 T 23-04-2016 RPE_RS01625 0c173a7d6d7bc6e92b383d7c14e2b024 324 SUPERFAMILY SSF56281 64 141 3.01E-29 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS01625 0c173a7d6d7bc6e92b383d7c14e2b024 324 SUPERFAMILY SSF56281 168 301 3.01E-29 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS01625 0c173a7d6d7bc6e92b383d7c14e2b024 324 Gene3D G3DSA:3.60.15.10 44 324 4.3E-69 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS01625 0c173a7d6d7bc6e92b383d7c14e2b024 324 PIRSF PIRSF038896 16 324 1.2E-88 T 23-04-2016 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D GO:0008270|GO:0070290 RPE_RS23230 d2398ad0867b5563b83b340978b0f13e 518 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 263 278 - T 23-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 RPE_RS23230 d2398ad0867b5563b83b340978b0f13e 518 SMART SM00928 425 470 1.5E-18 T 23-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 RPE_RS23230 d2398ad0867b5563b83b340978b0f13e 518 SUPERFAMILY SSF142984 337 420 4.05E-20 T 23-04-2016 RPE_RS23230 d2398ad0867b5563b83b340978b0f13e 518 SUPERFAMILY SSF52833 3 88 3.35E-6 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS23230 d2398ad0867b5563b83b340978b0f13e 518 PANTHER PTHR11780 2 507 1.6E-247 T 23-04-2016 RPE_RS23230 d2398ad0867b5563b83b340978b0f13e 518 PANTHER PTHR11780:SF0 2 507 1.6E-247 T 23-04-2016 RPE_RS23230 d2398ad0867b5563b83b340978b0f13e 518 SUPERFAMILY SSF140490 422 507 4.58E-29 T 23-04-2016 RPE_RS23230 d2398ad0867b5563b83b340978b0f13e 518 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 427 508 4.0E-30 T 23-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 RPE_RS23230 d2398ad0867b5563b83b340978b0f13e 518 SUPERFAMILY SSF142019 96 336 6.67E-87 T 23-04-2016 RPE_RS23230 d2398ad0867b5563b83b340978b0f13e 518 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 145 315 2.5E-48 T 23-04-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain RPE_RS23230 d2398ad0867b5563b83b340978b0f13e 518 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 438 449 - T 23-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 RPE_RS18200 491f6bdb4fa49d5907041215f84d64b5 368 SUPERFAMILY SSF52738 176 363 1.31E-52 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RPE_RS18200 491f6bdb4fa49d5907041215f84d64b5 368 PANTHER PTHR24421:SF16 2 356 6.5E-98 T 23-04-2016 RPE_RS18200 491f6bdb4fa49d5907041215f84d64b5 368 Gene3D G3DSA:3.40.50.180 174 363 1.7E-58 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RPE_RS18200 491f6bdb4fa49d5907041215f84d64b5 368 SUPERFAMILY SSF52172 3 109 9.39E-25 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS18200 491f6bdb4fa49d5907041215f84d64b5 368 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 2 363 33.641 T 23-04-2016 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RPE_RS18200 491f6bdb4fa49d5907041215f84d64b5 368 Pfam PF01339 CheB methylesterase 179 356 4.4E-50 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RPE_RS18200 491f6bdb4fa49d5907041215f84d64b5 368 SMART SM00448 2 117 4.0E-23 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS18200 491f6bdb4fa49d5907041215f84d64b5 368 Pfam PF00072 Response regulator receiver domain 5 108 8.5E-22 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS18200 491f6bdb4fa49d5907041215f84d64b5 368 PANTHER PTHR24421 2 356 6.5E-98 T 23-04-2016 RPE_RS18200 491f6bdb4fa49d5907041215f84d64b5 368 PIRSF PIRSF000876 1 366 3.3E-111 T 23-04-2016 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RPE_RS18200 491f6bdb4fa49d5907041215f84d64b5 368 Gene3D G3DSA:3.40.50.2300 2 111 2.3E-26 T 23-04-2016 RPE_RS13635 a0a32e3cd3e60ae763d40c5077509cf6 204 SMART SM00965 41 92 2.4E-11 T 23-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 RPE_RS13635 a0a32e3cd3e60ae763d40c5077509cf6 204 SUPERFAMILY SSF74653 98 188 7.85E-5 T 23-04-2016 RPE_RS13635 a0a32e3cd3e60ae763d40c5077509cf6 204 Pfam PF07660 Secretin and TonB N terminus short domain 42 83 2.3E-7 T 23-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 RPE_RS22865 a6bf5aefad1af3504317383599bf070e 228 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 84 178 6.6E-11 T 23-04-2016 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 RPE_RS22865 a6bf5aefad1af3504317383599bf070e 228 SMART SM00702 1 179 5.3E-18 T 23-04-2016 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 RPE_RS22865 a6bf5aefad1af3504317383599bf070e 228 Hamap MF_00657 PKHD-type hydroxylase YbiX [ybiX]. 1 228 46.638 T 23-04-2016 IPR023550 PKHD-type hydroxylase GO:0016706|GO:0055114 RPE_RS22865 a6bf5aefad1af3504317383599bf070e 228 PANTHER PTHR41536:SF1 2 228 1.3E-114 T 23-04-2016 RPE_RS22865 a6bf5aefad1af3504317383599bf070e 228 PANTHER PTHR41536 2 228 1.3E-114 T 23-04-2016 RPE_RS14640 874f08ee38b05839671e76718ec2b9e3 482 Pfam PF01212 Beta-eliminating lyase 55 426 1.6E-56 T 23-04-2016 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 RPE_RS14640 874f08ee38b05839671e76718ec2b9e3 482 Gene3D G3DSA:3.90.1150.10 315 462 4.1E-46 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS14640 874f08ee38b05839671e76718ec2b9e3 482 PANTHER PTHR32325 7 468 1.9E-123 T 23-04-2016 RPE_RS14640 874f08ee38b05839671e76718ec2b9e3 482 SUPERFAMILY SSF53383 13 463 4.23E-114 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS14640 874f08ee38b05839671e76718ec2b9e3 482 Gene3D G3DSA:3.40.640.10 68 314 1.1E-71 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS14640 874f08ee38b05839671e76718ec2b9e3 482 PIRSF PIRSF001386 9 464 1.5E-189 T 23-04-2016 IPR011166 Beta-eliminating lyase family GO:0009072|GO:0016830 KEGG: 00380+4.1.99.1|UniPathway: UPA00332 RPE_RS01040 ed3476c76c228d099ff40eff5ff6b95d 465 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 160 180 - T 23-04-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 RPE_RS01040 ed3476c76c228d099ff40eff5ff6b95d 465 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 6 448 6.7E-137 T 23-04-2016 RPE_RS01040 ed3476c76c228d099ff40eff5ff6b95d 465 Pfam PF01938 TRAM domain 390 448 6.1E-6 T 23-04-2016 IPR002792 TRAM domain RPE_RS01040 ed3476c76c228d099ff40eff5ff6b95d 465 Pfam PF00919 Uncharacterized protein family UPF0004 6 109 4.4E-28 T 23-04-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 RPE_RS01040 ed3476c76c228d099ff40eff5ff6b95d 465 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 5 448 68.091 T 23-04-2016 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 RPE_RS01040 ed3476c76c228d099ff40eff5ff6b95d 465 PANTHER PTHR11918 1 448 1.7E-163 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein RPE_RS01040 ed3476c76c228d099ff40eff5ff6b95d 465 Gene3D G3DSA:3.80.30.20 155 388 4.5E-73 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RPE_RS01040 ed3476c76c228d099ff40eff5ff6b95d 465 SUPERFAMILY SSF102114 134 380 2.35E-58 T 23-04-2016 RPE_RS01040 ed3476c76c228d099ff40eff5ff6b95d 465 Pfam PF04055 Radical SAM superfamily 160 334 3.0E-29 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RPE_RS01040 ed3476c76c228d099ff40eff5ff6b95d 465 SMART SM00729 156 376 1.1E-53 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RPE_RS01040 ed3476c76c228d099ff40eff5ff6b95d 465 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 6 445 5.0E-137 T 23-04-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 RPE_RS01040 ed3476c76c228d099ff40eff5ff6b95d 465 PANTHER PTHR11918:SF43 1 448 1.7E-163 T 23-04-2016 RPE_RS20335 84335278f90faf53e11ae6b9c269831f 579 Gene3D G3DSA:1.10.287.950 336 538 6.1E-40 T 23-04-2016 RPE_RS20335 84335278f90faf53e11ae6b9c269831f 579 SUPERFAMILY SSF58104 325 572 6.93E-52 T 23-04-2016 RPE_RS20335 84335278f90faf53e11ae6b9c269831f 579 SUPERFAMILY SSF58104 256 283 6.93E-52 T 23-04-2016 RPE_RS20335 84335278f90faf53e11ae6b9c269831f 579 PANTHER PTHR32089:SF40 186 263 4.7E-114 T 23-04-2016 RPE_RS20335 84335278f90faf53e11ae6b9c269831f 579 PANTHER PTHR32089:SF40 297 576 4.7E-114 T 23-04-2016 RPE_RS20335 84335278f90faf53e11ae6b9c269831f 579 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 378 572 6.3E-32 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS20335 84335278f90faf53e11ae6b9c269831f 579 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 417 444 2.4E-17 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS20335 84335278f90faf53e11ae6b9c269831f 579 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 446 475 2.4E-17 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS20335 84335278f90faf53e11ae6b9c269831f 579 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 339 368 2.4E-17 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS20335 84335278f90faf53e11ae6b9c269831f 579 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 494 523 2.4E-17 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS20335 84335278f90faf53e11ae6b9c269831f 579 PANTHER PTHR32089 186 263 4.7E-114 T 23-04-2016 RPE_RS20335 84335278f90faf53e11ae6b9c269831f 579 PANTHER PTHR32089 297 576 4.7E-114 T 23-04-2016 RPE_RS20335 84335278f90faf53e11ae6b9c269831f 579 Pfam PF00672 HAMP domain 208 276 2.6E-7 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS20335 84335278f90faf53e11ae6b9c269831f 579 SMART SM00304 228 281 4.2E-5 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS20335 84335278f90faf53e11ae6b9c269831f 579 SMART SM00283 319 573 3.9E-27 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS06440 7bede49af3dec027a178c5556544ee97 120 Pfam PF00072 Response regulator receiver domain 7 89 8.7E-16 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS06440 7bede49af3dec027a178c5556544ee97 120 PANTHER PTHR24423:SF438 7 118 2.4E-19 T 23-04-2016 RPE_RS06440 7bede49af3dec027a178c5556544ee97 120 PANTHER PTHR24423 7 118 2.4E-19 T 23-04-2016 RPE_RS06440 7bede49af3dec027a178c5556544ee97 120 SMART SM00448 5 115 3.1E-14 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS06440 7bede49af3dec027a178c5556544ee97 120 Gene3D G3DSA:3.40.50.2300 3 119 2.5E-26 T 23-04-2016 RPE_RS06440 7bede49af3dec027a178c5556544ee97 120 SUPERFAMILY SSF52172 4 118 7.26E-22 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS10565 6ce8cf99e845cb556ad5e9fa3701a508 470 PANTHER PTHR23135:SF2 1 468 2.4E-135 T 23-04-2016 RPE_RS10565 6ce8cf99e845cb556ad5e9fa3701a508 470 SUPERFAMILY SSF51984 6 98 9.02E-12 T 23-04-2016 RPE_RS10565 6ce8cf99e845cb556ad5e9fa3701a508 470 Gene3D G3DSA:3.40.1190.10 98 319 2.0E-59 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RPE_RS10565 6ce8cf99e845cb556ad5e9fa3701a508 470 Pfam PF08245 Mur ligase middle domain 119 300 1.3E-31 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RPE_RS10565 6ce8cf99e845cb556ad5e9fa3701a508 470 Gene3D G3DSA:3.40.50.720 7 97 7.1E-12 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS10565 6ce8cf99e845cb556ad5e9fa3701a508 470 PANTHER PTHR23135 1 468 2.4E-135 T 23-04-2016 RPE_RS10565 6ce8cf99e845cb556ad5e9fa3701a508 470 SUPERFAMILY SSF53244 319 463 9.61E-33 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RPE_RS10565 6ce8cf99e845cb556ad5e9fa3701a508 470 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 12 461 4.6E-101 T 23-04-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RPE_RS10565 6ce8cf99e845cb556ad5e9fa3701a508 470 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 117 140 - T 23-04-2016 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 RPE_RS10565 6ce8cf99e845cb556ad5e9fa3701a508 470 SUPERFAMILY SSF53623 110 317 6.8E-51 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RPE_RS10565 6ce8cf99e845cb556ad5e9fa3701a508 470 Gene3D G3DSA:3.90.190.20 321 460 2.5E-38 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RPE_RS10565 6ce8cf99e845cb556ad5e9fa3701a508 470 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 10 463 31.023 T 23-04-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RPE_RS11945 2db2f19367e977c00963f12ddcd3eb76 518 SUPERFAMILY SSF52096 2 264 4.35E-47 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS11945 2db2f19367e977c00963f12ddcd3eb76 518 PANTHER PTHR22855 7 511 2.9E-186 T 23-04-2016 RPE_RS11945 2db2f19367e977c00963f12ddcd3eb76 518 Pfam PF01039 Carboxyl transferase domain 28 502 9.4E-79 T 23-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RPE_RS11945 2db2f19367e977c00963f12ddcd3eb76 518 SUPERFAMILY SSF52096 227 499 1.06E-63 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS11945 2db2f19367e977c00963f12ddcd3eb76 518 Gene3D G3DSA:3.90.226.10 256 502 2.3E-56 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS11945 2db2f19367e977c00963f12ddcd3eb76 518 PANTHER PTHR22855:SF40 7 511 2.9E-186 T 23-04-2016 RPE_RS11945 2db2f19367e977c00963f12ddcd3eb76 518 Gene3D G3DSA:3.90.226.10 3 255 1.9E-47 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS00725 9c56e4527805dfe07c31c0763a261d33 381 PIRSF PIRSF001455 12 379 8.5E-100 T 23-04-2016 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 RPE_RS00725 9c56e4527805dfe07c31c0763a261d33 381 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 22 367 1.6E-107 T 23-04-2016 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 RPE_RS00725 9c56e4527805dfe07c31c0763a261d33 381 PANTHER PTHR21090 3 376 3.5E-163 T 23-04-2016 RPE_RS00725 9c56e4527805dfe07c31c0763a261d33 381 Gene3D G3DSA:3.40.50.1970 12 182 2.5E-62 T 23-04-2016 RPE_RS00725 9c56e4527805dfe07c31c0763a261d33 381 Gene3D G3DSA:1.20.1090.10 183 374 3.3E-64 T 23-04-2016 RPE_RS00725 9c56e4527805dfe07c31c0763a261d33 381 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 11 376 39.777 T 23-04-2016 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 RPE_RS00725 9c56e4527805dfe07c31c0763a261d33 381 SUPERFAMILY SSF56796 13 374 5.5E-108 T 23-04-2016 RPE_RS00725 9c56e4527805dfe07c31c0763a261d33 381 Pfam PF01761 3-dehydroquinate synthase 77 343 1.5E-100 T 23-04-2016 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 RPE_RS11185 41a3003a547aa504ac59b2d81dc8a547 354 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 21 346 2.1E-123 T 23-04-2016 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 RPE_RS11185 41a3003a547aa504ac59b2d81dc8a547 354 Hamap MF_00230 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [cobT]. 19 353 33.818 T 23-04-2016 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 RPE_RS11185 41a3003a547aa504ac59b2d81dc8a547 354 Pfam PF02277 Phosphoribosyltransferase 17 346 4.6E-121 T 23-04-2016 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 RPE_RS11185 41a3003a547aa504ac59b2d81dc8a547 354 Gene3D G3DSA:3.40.50.10210 79 334 1.3E-100 T 23-04-2016 RPE_RS11185 41a3003a547aa504ac59b2d81dc8a547 354 SUPERFAMILY SSF52733 16 346 2.35E-108 T 23-04-2016 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 RPE_RS11185 41a3003a547aa504ac59b2d81dc8a547 354 Gene3D G3DSA:1.10.1610.10 15 78 3.7E-26 T 23-04-2016 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 RPE_RS11185 41a3003a547aa504ac59b2d81dc8a547 354 PANTHER PTHR21712 5 347 1.8E-108 T 23-04-2016 RPE_RS11185 41a3003a547aa504ac59b2d81dc8a547 354 PANTHER PTHR21712:SF4 5 347 1.8E-108 T 23-04-2016 RPE_RS01005 e9efcedbbe5e93976c45b400472bd5a7 269 PANTHER PTHR33867 30 249 7.6E-43 T 23-04-2016 RPE_RS01005 e9efcedbbe5e93976c45b400472bd5a7 269 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 36 187 21.285 T 23-04-2016 IPR003728 Ribosome maturation factor RimP GO:0042274 RPE_RS01005 e9efcedbbe5e93976c45b400472bd5a7 269 Gene3D G3DSA:3.30.300.70 34 110 1.1E-21 T 23-04-2016 IPR028989 Ribosome maturation factor RimP, N-terminal RPE_RS01005 e9efcedbbe5e93976c45b400472bd5a7 269 Gene3D G3DSA:2.30.30.180 119 184 8.2E-10 T 23-04-2016 IPR028998 Ribosome maturation factor RimP, C-terminal RPE_RS01005 e9efcedbbe5e93976c45b400472bd5a7 269 SUPERFAMILY SSF74942 114 188 5.1E-15 T 23-04-2016 IPR028998 Ribosome maturation factor RimP, C-terminal RPE_RS01005 e9efcedbbe5e93976c45b400472bd5a7 269 Pfam PF02576 Putative ribosome maturation factor RimP 43 183 2.7E-37 T 23-04-2016 IPR003728 Ribosome maturation factor RimP GO:0042274 RPE_RS01005 e9efcedbbe5e93976c45b400472bd5a7 269 SUPERFAMILY SSF75420 30 113 2.75E-19 T 23-04-2016 IPR028989 Ribosome maturation factor RimP, N-terminal RPE_RS01005 e9efcedbbe5e93976c45b400472bd5a7 269 PANTHER PTHR33867:SF1 30 249 7.6E-43 T 23-04-2016 RPE_RS23590 52d2803ab3f5c8ea2931c8993514da80 351 Gene3D G3DSA:3.20.20.70 4 342 1.6E-145 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS23590 52d2803ab3f5c8ea2931c8993514da80 351 PANTHER PTHR11627:SF20 4 351 2.0E-180 T 23-04-2016 RPE_RS23590 52d2803ab3f5c8ea2931c8993514da80 351 SUPERFAMILY SSF51569 4 348 2.3E-131 T 23-04-2016 RPE_RS23590 52d2803ab3f5c8ea2931c8993514da80 351 ProSitePatterns PS00158 Fructose-bisphosphate aldolase class-I active site. 217 227 - T 23-04-2016 IPR029768 Fructose-bisphosphate aldolase class-I active site KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385|UniPathway: UPA00109 RPE_RS23590 52d2803ab3f5c8ea2931c8993514da80 351 PANTHER PTHR11627 4 351 2.0E-180 T 23-04-2016 RPE_RS23590 52d2803ab3f5c8ea2931c8993514da80 351 Pfam PF00274 Fructose-bisphosphate aldolase class-I 6 349 6.0E-138 T 23-04-2016 IPR000741 Fructose-bisphosphate aldolase, class-I GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS19060 0ed8adb60f9f94cd7eefa13941f01161 211 SUPERFAMILY SSF50475 41 172 2.36E-20 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RPE_RS19060 0ed8adb60f9f94cd7eefa13941f01161 211 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 44 136 1.1E-15 T 23-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 RPE_RS19060 0ed8adb60f9f94cd7eefa13941f01161 211 PANTHER PTHR30212:SF3 7 188 3.0E-37 T 23-04-2016 RPE_RS19060 0ed8adb60f9f94cd7eefa13941f01161 211 Gene3D G3DSA:2.30.110.10 37 164 1.9E-30 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RPE_RS19060 0ed8adb60f9f94cd7eefa13941f01161 211 PANTHER PTHR30212 7 188 3.0E-37 T 23-04-2016 RPE_RS21900 97e3bb7a6d2b3d39fb0891ca24a5ccf7 470 Gene3D G3DSA:1.10.45.10 430 469 9.2E-13 T 23-04-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 RPE_RS21900 97e3bb7a6d2b3d39fb0891ca24a5ccf7 470 Pfam PF01565 FAD binding domain 49 184 6.0E-35 T 23-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RPE_RS21900 97e3bb7a6d2b3d39fb0891ca24a5ccf7 470 PANTHER PTHR11748 1 470 1.6E-209 T 23-04-2016 RPE_RS21900 97e3bb7a6d2b3d39fb0891ca24a5ccf7 470 SUPERFAMILY SSF55103 227 470 4.91E-58 T 23-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RPE_RS21900 97e3bb7a6d2b3d39fb0891ca24a5ccf7 470 Pfam PF02913 FAD linked oxidases, C-terminal domain 222 469 1.1E-53 T 23-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 RPE_RS21900 97e3bb7a6d2b3d39fb0891ca24a5ccf7 470 Gene3D G3DSA:3.30.465.10 103 223 1.8E-36 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RPE_RS21900 97e3bb7a6d2b3d39fb0891ca24a5ccf7 470 SUPERFAMILY SSF56176 10 223 9.22E-72 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RPE_RS21900 97e3bb7a6d2b3d39fb0891ca24a5ccf7 470 PANTHER PTHR11748:SF76 1 470 1.6E-209 T 23-04-2016 RPE_RS21900 97e3bb7a6d2b3d39fb0891ca24a5ccf7 470 Gene3D G3DSA:3.30.43.10 6 101 3.8E-25 T 23-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 RPE_RS17875 bdc7cfc9281266938c339e2d38b45c14 64 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 8 61 1.8E-19 T 23-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 RPE_RS17875 bdc7cfc9281266938c339e2d38b45c14 64 Pfam PF00327 Ribosomal protein L30p/L7e 10 58 2.9E-14 T 23-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain RPE_RS17875 bdc7cfc9281266938c339e2d38b45c14 64 PIRSF PIRSF002211 1 64 4.9E-20 T 23-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 RPE_RS17875 bdc7cfc9281266938c339e2d38b45c14 64 Gene3D G3DSA:3.30.1390.20 5 62 2.5E-26 T 23-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain RPE_RS17875 bdc7cfc9281266938c339e2d38b45c14 64 SUPERFAMILY SSF55129 6 60 7.33E-17 T 23-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain RPE_RS17875 bdc7cfc9281266938c339e2d38b45c14 64 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 5 62 16.838 T 23-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 RPE_RS17875 bdc7cfc9281266938c339e2d38b45c14 64 PANTHER PTHR15892 2 64 2.0E-18 T 23-04-2016 RPE_RS03085 06e8a9e0fbc52cf6af14761e55cb4ad1 638 Gene3D G3DSA:3.40.50.410 451 603 3.6E-10 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS03085 06e8a9e0fbc52cf6af14761e55cb4ad1 638 PANTHER PTHR41248 1 638 1.8E-152 T 23-04-2016 RPE_RS03085 06e8a9e0fbc52cf6af14761e55cb4ad1 638 SUPERFAMILY SSF53300 449 636 2.23E-21 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS03085 06e8a9e0fbc52cf6af14761e55cb4ad1 638 Pfam PF00092 von Willebrand factor type A domain 451 604 5.4E-8 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS03085 06e8a9e0fbc52cf6af14761e55cb4ad1 638 SMART SM00327 448 631 9.7E-21 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS03085 06e8a9e0fbc52cf6af14761e55cb4ad1 638 PANTHER PTHR41248:SF1 1 638 1.8E-152 T 23-04-2016 RPE_RS04470 fb18a5562481dd7d6a1f45b4c69ab603 370 SUPERFAMILY SSF90123 258 346 3.79E-6 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RPE_RS04470 fb18a5562481dd7d6a1f45b4c69ab603 370 Gene3D G3DSA:1.20.1560.10 281 346 1.6E-4 T 23-04-2016 RPE_RS04470 fb18a5562481dd7d6a1f45b4c69ab603 370 PANTHER PTHR11384:SF3 10 351 3.7E-54 T 23-04-2016 RPE_RS04470 fb18a5562481dd7d6a1f45b4c69ab603 370 Pfam PF05992 SbmA/BacA-like family 38 344 1.0E-19 T 23-04-2016 IPR009248 SbmA/BacA-like GO:0005215|GO:0006810|GO:0016021 RPE_RS04470 fb18a5562481dd7d6a1f45b4c69ab603 370 PANTHER PTHR11384 10 351 3.7E-54 T 23-04-2016 RPE_RS15430 27b9b2ecde2da90b499e6ac6566056bc 565 PANTHER PTHR11575:SF16 25 537 4.2E-145 T 23-04-2016 RPE_RS15430 27b9b2ecde2da90b499e6ac6566056bc 565 PRINTS PR01607 Apyrase family signature 290 313 4.5E-11 T 23-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RPE_RS15430 27b9b2ecde2da90b499e6ac6566056bc 565 PRINTS PR01607 Apyrase family signature 47 65 4.5E-11 T 23-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RPE_RS15430 27b9b2ecde2da90b499e6ac6566056bc 565 PRINTS PR01607 Apyrase family signature 318 338 4.5E-11 T 23-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RPE_RS15430 27b9b2ecde2da90b499e6ac6566056bc 565 PRINTS PR01607 Apyrase family signature 271 288 4.5E-11 T 23-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RPE_RS15430 27b9b2ecde2da90b499e6ac6566056bc 565 SUPERFAMILY SSF55816 378 563 5.36E-31 T 23-04-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 RPE_RS15430 27b9b2ecde2da90b499e6ac6566056bc 565 TIGRFAM TIGR04486 thiosulf_SoxB: thiosulfohydrolase SoxB 3 564 3.4E-256 T 23-04-2016 IPR030998 Thiosulfohydrolase SoxB RPE_RS15430 27b9b2ecde2da90b499e6ac6566056bc 565 PANTHER PTHR11575 25 537 4.2E-145 T 23-04-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 RPE_RS15430 27b9b2ecde2da90b499e6ac6566056bc 565 SUPERFAMILY SSF56300 43 66 8.09E-80 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RPE_RS15430 27b9b2ecde2da90b499e6ac6566056bc 565 SUPERFAMILY SSF56300 120 378 8.09E-80 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RPE_RS15430 27b9b2ecde2da90b499e6ac6566056bc 565 Gene3D G3DSA:3.60.21.10 120 378 6.0E-81 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RPE_RS15430 27b9b2ecde2da90b499e6ac6566056bc 565 Gene3D G3DSA:3.60.21.10 46 66 6.0E-81 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RPE_RS15430 27b9b2ecde2da90b499e6ac6566056bc 565 Pfam PF02872 5'-nucleotidase, C-terminal domain 382 523 3.6E-14 T 23-04-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 RPE_RS15430 27b9b2ecde2da90b499e6ac6566056bc 565 Gene3D G3DSA:3.90.780.10 381 523 3.0E-15 T 23-04-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 RPE_RS08370 0cd09795cd8a40fc02bf586d03313b08 534 SUPERFAMILY SSF53218 167 305 1.13E-15 T 23-04-2016 IPR001453 MoaB/Mog domain RPE_RS08370 0cd09795cd8a40fc02bf586d03313b08 534 Gene3D G3DSA:3.90.550.10 338 531 7.8E-42 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS08370 0cd09795cd8a40fc02bf586d03313b08 534 Gene3D G3DSA:3.40.980.10 149 301 2.5E-12 T 23-04-2016 IPR001453 MoaB/Mog domain RPE_RS08370 0cd09795cd8a40fc02bf586d03313b08 534 SUPERFAMILY SSF53448 340 527 1.62E-38 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS08370 0cd09795cd8a40fc02bf586d03313b08 534 PIRSF PIRSF036626 1 534 5.6E-250 T 23-04-2016 IPR012184 Bifunctional molybdopterin binding protein /nucleotidyl transferase, putative RPE_RS08370 0cd09795cd8a40fc02bf586d03313b08 534 PANTHER PTHR19136 297 532 2.9E-75 T 23-04-2016 RPE_RS08370 0cd09795cd8a40fc02bf586d03313b08 534 PANTHER PTHR19136:SF78 297 532 2.9E-75 T 23-04-2016 RPE_RS08370 0cd09795cd8a40fc02bf586d03313b08 534 Pfam PF12804 MobA-like NTP transferase domain 342 504 3.2E-43 T 23-04-2016 IPR025877 MobA-like NTP transferase RPE_RS08370 0cd09795cd8a40fc02bf586d03313b08 534 Gene3D G3DSA:3.90.105.10 20 52 4.0E-5 T 23-04-2016 RPE_RS08370 0cd09795cd8a40fc02bf586d03313b08 534 SMART SM00852 168 301 1.8E-5 T 23-04-2016 IPR001453 MoaB/Mog domain RPE_RS20850 1adbd6874915e11343846830f9013388 682 Pfam PF00009 Elongation factor Tu GTP binding domain 13 277 1.5E-30 T 23-04-2016 RPE_RS20850 1adbd6874915e11343846830f9013388 682 SUPERFAMILY SSF50447 292 377 8.48E-13 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain RPE_RS20850 1adbd6874915e11343846830f9013388 682 Pfam PF03764 Elongation factor G, domain IV 463 580 5.5E-40 T 23-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 RPE_RS20850 1adbd6874915e11343846830f9013388 682 Gene3D G3DSA:3.30.230.10 468 580 2.4E-44 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RPE_RS20850 1adbd6874915e11343846830f9013388 682 SUPERFAMILY SSF54980 586 676 4.51E-19 T 23-04-2016 IPR009022 Elongation factor G, III-V domain RPE_RS20850 1adbd6874915e11343846830f9013388 682 Gene3D G3DSA:3.40.50.300 8 282 1.7E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS20850 1adbd6874915e11343846830f9013388 682 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 1.9E-13 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RPE_RS20850 1adbd6874915e11343846830f9013388 682 Gene3D G3DSA:3.30.70.870 390 463 1.0E-23 T 23-04-2016 RPE_RS20850 1adbd6874915e11343846830f9013388 682 Pfam PF14492 Elongation Factor G, domain II 390 460 1.3E-20 T 23-04-2016 IPR009022 Elongation factor G, III-V domain RPE_RS20850 1adbd6874915e11343846830f9013388 682 SUPERFAMILY SSF52540 8 278 1.43E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS20850 1adbd6874915e11343846830f9013388 682 SMART SM00838 583 673 6.5E-16 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain RPE_RS20850 1adbd6874915e11343846830f9013388 682 PANTHER PTHR23115:SF98 252 677 7.4E-234 T 23-04-2016 RPE_RS20850 1adbd6874915e11343846830f9013388 682 PANTHER PTHR23115:SF98 1 178 7.4E-234 T 23-04-2016 RPE_RS20850 1adbd6874915e11343846830f9013388 682 SMART SM00889 464 581 3.5E-60 T 23-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 RPE_RS20850 1adbd6874915e11343846830f9013388 682 Gene3D G3DSA:2.40.30.10 295 378 4.7E-15 T 23-04-2016 RPE_RS20850 1adbd6874915e11343846830f9013388 682 SUPERFAMILY SSF54211 463 582 1.29E-36 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RPE_RS20850 1adbd6874915e11343846830f9013388 682 SUPERFAMILY SSF54980 387 463 6.83E-18 T 23-04-2016 IPR009022 Elongation factor G, III-V domain RPE_RS20850 1adbd6874915e11343846830f9013388 682 Pfam PF00679 Elongation factor G C-terminus 583 672 2.9E-20 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain RPE_RS20850 1adbd6874915e11343846830f9013388 682 Gene3D G3DSA:3.30.70.240 581 676 5.5E-18 T 23-04-2016 IPR000640 Translation elongation factor EFG, V domain RPE_RS20850 1adbd6874915e11343846830f9013388 682 PANTHER PTHR23115 252 677 7.4E-234 T 23-04-2016 RPE_RS20850 1adbd6874915e11343846830f9013388 682 PANTHER PTHR23115 1 178 7.4E-234 T 23-04-2016 RPE_RS07645 1e3e81c3e3a27ad41dd8dc14ed97b402 410 Gene3D G3DSA:3.90.1150.10 291 404 9.1E-27 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS07645 1e3e81c3e3a27ad41dd8dc14ed97b402 410 SUPERFAMILY SSF53383 55 403 5.19E-96 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS07645 1e3e81c3e3a27ad41dd8dc14ed97b402 410 PANTHER PTHR30244:SF15 41 407 1.2E-100 T 23-04-2016 RPE_RS07645 1e3e81c3e3a27ad41dd8dc14ed97b402 410 PANTHER PTHR30244 41 407 1.2E-100 T 23-04-2016 RPE_RS07645 1e3e81c3e3a27ad41dd8dc14ed97b402 410 Gene3D G3DSA:3.40.640.10 53 280 3.6E-71 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS07645 1e3e81c3e3a27ad41dd8dc14ed97b402 410 PIRSF PIRSF000390 29 407 3.8E-95 T 23-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RPE_RS07645 1e3e81c3e3a27ad41dd8dc14ed97b402 410 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 58 400 4.5E-102 T 23-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RPE_RS14500 070e8898d7aa70e15bd1948f7c955f41 432 Pfam PF01595 Domain of unknown function DUF21 8 199 6.3E-39 T 23-04-2016 IPR002550 Domain of unknown function DUF21 RPE_RS14500 070e8898d7aa70e15bd1948f7c955f41 432 SUPERFAMILY SSF56176 347 430 1.2E-24 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RPE_RS14500 070e8898d7aa70e15bd1948f7c955f41 432 Gene3D G3DSA:3.10.580.10 200 339 1.9E-17 T 23-04-2016 RPE_RS14500 070e8898d7aa70e15bd1948f7c955f41 432 PANTHER PTHR22777:SF8 2 431 1.5E-183 T 23-04-2016 RPE_RS14500 070e8898d7aa70e15bd1948f7c955f41 432 PANTHER PTHR22777 2 431 1.5E-183 T 23-04-2016 RPE_RS14500 070e8898d7aa70e15bd1948f7c955f41 432 Gene3D G3DSA:3.30.465.10 343 426 1.1E-27 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RPE_RS14500 070e8898d7aa70e15bd1948f7c955f41 432 SMART SM00116 223 272 0.0021 T 23-04-2016 IPR000644 CBS domain RPE_RS14500 070e8898d7aa70e15bd1948f7c955f41 432 SMART SM00116 285 333 9.1 T 23-04-2016 IPR000644 CBS domain RPE_RS14500 070e8898d7aa70e15bd1948f7c955f41 432 Pfam PF00571 CBS domain 214 271 8.1E-6 T 23-04-2016 IPR000644 CBS domain RPE_RS14500 070e8898d7aa70e15bd1948f7c955f41 432 Pfam PF00571 CBS domain 284 333 1.6E-4 T 23-04-2016 IPR000644 CBS domain RPE_RS14500 070e8898d7aa70e15bd1948f7c955f41 432 SUPERFAMILY SSF54631 201 334 4.51E-28 T 23-04-2016 RPE_RS14500 070e8898d7aa70e15bd1948f7c955f41 432 SMART SM01091 348 427 2.9E-33 T 23-04-2016 IPR005170 Transporter-associated domain RPE_RS14500 070e8898d7aa70e15bd1948f7c955f41 432 Pfam PF03471 Transporter associated domain 349 426 5.3E-24 T 23-04-2016 IPR005170 Transporter-associated domain RPE_RS01175 fb66ac45d63a50aa5465112cceee19d1 222 Gene3D G3DSA:3.60.15.10 14 219 4.2E-57 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS01175 fb66ac45d63a50aa5465112cceee19d1 222 SMART SM00849 22 202 2.2E-37 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS01175 fb66ac45d63a50aa5465112cceee19d1 222 PANTHER PTHR11935:SF115 15 219 1.8E-114 T 23-04-2016 RPE_RS01175 fb66ac45d63a50aa5465112cceee19d1 222 SUPERFAMILY SSF56281 15 218 1.04E-55 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS01175 fb66ac45d63a50aa5465112cceee19d1 222 PANTHER PTHR11935 15 219 1.8E-114 T 23-04-2016 RPE_RS01175 fb66ac45d63a50aa5465112cceee19d1 222 Pfam PF00753 Metallo-beta-lactamase superfamily 19 202 5.1E-32 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS04635 333f025c01acf187b67d22e7f308c81c 131 SUPERFAMILY SSF52172 7 125 2.13E-31 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS04635 333f025c01acf187b67d22e7f308c81c 131 Gene3D G3DSA:3.40.50.2300 7 125 1.3E-33 T 23-04-2016 RPE_RS04635 333f025c01acf187b67d22e7f308c81c 131 SMART SM00448 7 121 8.2E-30 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS04635 333f025c01acf187b67d22e7f308c81c 131 Pfam PF00072 Response regulator receiver domain 9 122 1.1E-27 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS04635 333f025c01acf187b67d22e7f308c81c 131 PANTHER PTHR26402 7 125 3.1E-34 T 23-04-2016 RPE_RS01740 91b37948bda4b160c96621a82b9b5493 200 Pfam PF00398 Ribosomal RNA adenine dimethylase 48 112 2.8E-7 T 23-04-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm RPE_RS01740 91b37948bda4b160c96621a82b9b5493 200 PANTHER PTHR11727:SF14 15 134 2.6E-19 T 23-04-2016 RPE_RS01740 91b37948bda4b160c96621a82b9b5493 200 SMART SM00650 43 173 0.0091 T 23-04-2016 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 RPE_RS01740 91b37948bda4b160c96621a82b9b5493 200 SUPERFAMILY SSF53335 22 170 1.21E-20 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS01740 91b37948bda4b160c96621a82b9b5493 200 Gene3D G3DSA:3.40.50.150 36 146 4.9E-16 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS01740 91b37948bda4b160c96621a82b9b5493 200 PANTHER PTHR11727 15 134 2.6E-19 T 23-04-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm RPE_RS00745 e4e4c232b3dec6edd641e5c436ce008f 413 SUPERFAMILY SSF56266 19 410 2.35E-133 T 23-04-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 RPE_RS00745 e4e4c232b3dec6edd641e5c436ce008f 413 Hamap MF_01106 Arginine biosynthesis bifunctional protein ArgJ [argJ]. 1 413 154.316 T 23-04-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 RPE_RS00745 e4e4c232b3dec6edd641e5c436ce008f 413 ProDom PD004193 ACETYLTRANSFERASE ORNITHINE ARGININE BIOSYNTHESIS ARGJ GLUTAMATE N-ACETYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIFUNCTIONAL 26 411 0.0 T 23-04-2016 RPE_RS00745 e4e4c232b3dec6edd641e5c436ce008f 413 PANTHER PTHR23100:SF0 21 413 2.5E-171 T 23-04-2016 RPE_RS00745 e4e4c232b3dec6edd641e5c436ce008f 413 Pfam PF01960 ArgJ family 24 413 3.4E-138 T 23-04-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 RPE_RS00745 e4e4c232b3dec6edd641e5c436ce008f 413 TIGRFAM TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 18 413 1.5E-111 T 23-04-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 RPE_RS00745 e4e4c232b3dec6edd641e5c436ce008f 413 PANTHER PTHR23100 21 413 2.5E-171 T 23-04-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 RPE_RS00745 e4e4c232b3dec6edd641e5c436ce008f 413 Gene3D G3DSA:3.60.70.12 15 285 4.9E-94 T 23-04-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 RPE_RS05625 2e5160edc00cd35daeb7f58cbb4ba999 184 Gene3D G3DSA:3.40.50.150 10 144 2.1E-12 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS05625 2e5160edc00cd35daeb7f58cbb4ba999 184 Pfam PF05050 Methyltransferase FkbM domain 65 148 5.3E-12 T 23-04-2016 IPR006342 Methyltransferase FkbM KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- RPE_RS05625 2e5160edc00cd35daeb7f58cbb4ba999 184 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 2 123 1.7E-15 T 23-04-2016 IPR006342 Methyltransferase FkbM KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- RPE_RS05625 2e5160edc00cd35daeb7f58cbb4ba999 184 PANTHER PTHR36973 1 184 4.4E-16 T 23-04-2016 RPE_RS05625 2e5160edc00cd35daeb7f58cbb4ba999 184 SUPERFAMILY SSF53335 8 153 6.31E-17 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS05625 2e5160edc00cd35daeb7f58cbb4ba999 184 PANTHER PTHR36973:SF1 1 184 4.4E-16 T 23-04-2016 RPE_RS14925 88942d385450a4020a23c57557e0bf48 367 Gene3D G3DSA:3.30.420.40 2 202 5.2E-65 T 23-04-2016 RPE_RS14925 88942d385450a4020a23c57557e0bf48 367 PANTHER PTHR30605 1 367 1.8E-137 T 23-04-2016 RPE_RS14925 88942d385450a4020a23c57557e0bf48 367 SUPERFAMILY SSF53067 72 117 4.14E-19 T 23-04-2016 RPE_RS14925 88942d385450a4020a23c57557e0bf48 367 SUPERFAMILY SSF53067 147 317 4.14E-19 T 23-04-2016 RPE_RS14925 88942d385450a4020a23c57557e0bf48 367 SUPERFAMILY SSF53067 3 35 4.14E-19 T 23-04-2016 RPE_RS14925 88942d385450a4020a23c57557e0bf48 367 Pfam PF03702 Uncharacterised protein family (UPF0075) 5 362 9.1E-89 T 23-04-2016 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 KEGG: 00040+2.7.1.17|UniPathway: UPA00343|UniPathway: UPA00544 RPE_RS14925 88942d385450a4020a23c57557e0bf48 367 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 3 367 36.954 T 23-04-2016 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 KEGG: 00040+2.7.1.17|UniPathway: UPA00343|UniPathway: UPA00544 RPE_RS11270 88ac4e5c1c0ee860966d72c4c93f0ccd 708 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 446 562 1.8E-15 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS11270 88ac4e5c1c0ee860966d72c4c93f0ccd 708 Gene3D G3DSA:3.30.450.20 92 178 2.1E-7 T 23-04-2016 RPE_RS11270 88ac4e5c1c0ee860966d72c4c93f0ccd 708 PRINTS PR00344 Bacterial sensor protein C-terminal signature 510 520 5.4E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS11270 88ac4e5c1c0ee860966d72c4c93f0ccd 708 PRINTS PR00344 Bacterial sensor protein C-terminal signature 492 506 5.4E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS11270 88ac4e5c1c0ee860966d72c4c93f0ccd 708 PRINTS PR00344 Bacterial sensor protein C-terminal signature 523 541 5.4E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS11270 88ac4e5c1c0ee860966d72c4c93f0ccd 708 PRINTS PR00344 Bacterial sensor protein C-terminal signature 547 560 5.4E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS11270 88ac4e5c1c0ee860966d72c4c93f0ccd 708 Gene3D G3DSA:3.30.565.10 405 561 6.1E-35 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS11270 88ac4e5c1c0ee860966d72c4c93f0ccd 708 Gene3D G3DSA:3.40.50.2300 585 698 9.1E-27 T 23-04-2016 RPE_RS11270 88ac4e5c1c0ee860966d72c4c93f0ccd 708 Gene3D G3DSA:3.30.450.20 179 281 1.2E-4 T 23-04-2016 RPE_RS11270 88ac4e5c1c0ee860966d72c4c93f0ccd 708 SUPERFAMILY SSF52172 585 699 7.26E-26 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS11270 88ac4e5c1c0ee860966d72c4c93f0ccd 708 SUPERFAMILY SSF47384 329 400 1.28E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS11270 88ac4e5c1c0ee860966d72c4c93f0ccd 708 Pfam PF00072 Response regulator receiver domain 587 690 1.7E-15 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS11270 88ac4e5c1c0ee860966d72c4c93f0ccd 708 Pfam PF02743 Cache domain 55 273 1.3E-13 T 23-04-2016 IPR033479 Double Cache domain 1 RPE_RS11270 88ac4e5c1c0ee860966d72c4c93f0ccd 708 SMART SM00387 444 563 1.2E-26 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS11270 88ac4e5c1c0ee860966d72c4c93f0ccd 708 SMART SM00388 338 403 0.0033 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS11270 88ac4e5c1c0ee860966d72c4c93f0ccd 708 PANTHER PTHR24423:SF438 322 699 2.2E-111 T 23-04-2016 RPE_RS11270 88ac4e5c1c0ee860966d72c4c93f0ccd 708 PANTHER PTHR24423:SF438 1 8 2.2E-111 T 23-04-2016 RPE_RS11270 88ac4e5c1c0ee860966d72c4c93f0ccd 708 SMART SM00448 584 693 7.6E-17 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS11270 88ac4e5c1c0ee860966d72c4c93f0ccd 708 SUPERFAMILY SSF55874 393 561 4.98E-36 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS11270 88ac4e5c1c0ee860966d72c4c93f0ccd 708 PANTHER PTHR24423 322 699 2.2E-111 T 23-04-2016 RPE_RS11270 88ac4e5c1c0ee860966d72c4c93f0ccd 708 PANTHER PTHR24423 1 8 2.2E-111 T 23-04-2016 RPE_RS15400 1d6f24dc93d9ca79ebc654b951f2990d 433 Pfam PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding 368 432 1.7E-17 T 23-04-2016 IPR015323 Flavocytochrome c sulphide dehydrogenase, flavin-binding GO:0016491|GO:0050660|GO:0055114 KEGG: 00920+1.8.2.3|MetaCyc: PWY-5274 RPE_RS15400 1d6f24dc93d9ca79ebc654b951f2990d 433 Gene3D G3DSA:3.50.50.60 292 361 1.6E-40 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS15400 1d6f24dc93d9ca79ebc654b951f2990d 433 Gene3D G3DSA:3.50.50.60 42 156 1.6E-40 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS15400 1d6f24dc93d9ca79ebc654b951f2990d 433 PANTHER PTHR10632 44 383 1.1E-95 T 23-04-2016 RPE_RS15400 1d6f24dc93d9ca79ebc654b951f2990d 433 PANTHER PTHR10632:SF10 44 383 1.1E-95 T 23-04-2016 RPE_RS15400 1d6f24dc93d9ca79ebc654b951f2990d 433 SUPERFAMILY SSF55424 366 433 6.59E-18 T 23-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 RPE_RS15400 1d6f24dc93d9ca79ebc654b951f2990d 433 Gene3D G3DSA:3.50.50.60 159 291 1.9E-49 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS15400 1d6f24dc93d9ca79ebc654b951f2990d 433 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 44 156 7.9E-14 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS15400 1d6f24dc93d9ca79ebc654b951f2990d 433 SUPERFAMILY SSF51905 155 291 4.27E-34 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS15400 1d6f24dc93d9ca79ebc654b951f2990d 433 Gene3D G3DSA:3.90.760.10 366 433 1.4E-18 T 23-04-2016 IPR015323 Flavocytochrome c sulphide dehydrogenase, flavin-binding GO:0016491|GO:0050660|GO:0055114 KEGG: 00920+1.8.2.3|MetaCyc: PWY-5274 RPE_RS15400 1d6f24dc93d9ca79ebc654b951f2990d 433 SUPERFAMILY SSF51905 43 191 3.02E-27 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS23460 c3225df604f7c70b0fd687ef9c02f8a1 497 Pfam PF02913 FAD linked oxidases, C-terminal domain 228 469 2.5E-66 T 23-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 RPE_RS23460 c3225df604f7c70b0fd687ef9c02f8a1 497 Gene3D G3DSA:3.30.465.10 109 229 6.6E-34 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RPE_RS23460 c3225df604f7c70b0fd687ef9c02f8a1 497 SUPERFAMILY SSF55103 202 471 1.47E-68 T 23-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RPE_RS23460 c3225df604f7c70b0fd687ef9c02f8a1 497 SUPERFAMILY SSF56176 17 229 3.22E-68 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RPE_RS23460 c3225df604f7c70b0fd687ef9c02f8a1 497 Gene3D G3DSA:1.10.45.10 430 469 1.0E-6 T 23-04-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 RPE_RS23460 c3225df604f7c70b0fd687ef9c02f8a1 497 Gene3D G3DSA:3.30.43.10 7 107 1.1E-27 T 23-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 RPE_RS23460 c3225df604f7c70b0fd687ef9c02f8a1 497 PANTHER PTHR11748 1 483 4.5E-205 T 23-04-2016 RPE_RS23460 c3225df604f7c70b0fd687ef9c02f8a1 497 Pfam PF01565 FAD binding domain 54 192 1.2E-37 T 23-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RPE_RS23460 c3225df604f7c70b0fd687ef9c02f8a1 497 PANTHER PTHR11748:SF78 1 483 4.5E-205 T 23-04-2016 RPE_RS05485 915b4cdfddabb7b261374463ff9272ae 705 Pfam PF03412 Peptidase C39 family 5 124 2.8E-15 T 23-04-2016 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 RPE_RS05485 915b4cdfddabb7b261374463ff9272ae 705 PANTHER PTHR24221 119 702 0.0 T 23-04-2016 RPE_RS05485 915b4cdfddabb7b261374463ff9272ae 705 Gene3D G3DSA:3.90.70.10 5 124 2.3E-23 T 23-04-2016 RPE_RS05485 915b4cdfddabb7b261374463ff9272ae 705 ProSitePatterns PS00211 ABC transporters family signature. 603 617 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS05485 915b4cdfddabb7b261374463ff9272ae 705 SUPERFAMILY SSF90123 137 448 1.44E-70 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RPE_RS05485 915b4cdfddabb7b261374463ff9272ae 705 Gene3D G3DSA:3.40.50.300 464 696 4.3E-84 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS05485 915b4cdfddabb7b261374463ff9272ae 705 SUPERFAMILY SSF52540 458 701 3.13E-90 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS05485 915b4cdfddabb7b261374463ff9272ae 705 SMART SM00382 491 677 4.0E-20 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS05485 915b4cdfddabb7b261374463ff9272ae 705 Pfam PF00005 ABC transporter 482 631 2.5E-34 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS05485 915b4cdfddabb7b261374463ff9272ae 705 Pfam PF00664 ABC transporter transmembrane region 152 419 7.3E-57 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RPE_RS05485 915b4cdfddabb7b261374463ff9272ae 705 PANTHER PTHR24221:SF246 119 702 0.0 T 23-04-2016 RPE_RS05485 915b4cdfddabb7b261374463ff9272ae 705 Gene3D G3DSA:1.20.1560.10 137 446 4.7E-83 T 23-04-2016 RPE_RS05485 915b4cdfddabb7b261374463ff9272ae 705 TIGRFAM TIGR01846 type_I_sec_HlyB: type I secretion system ATPase 10 702 9.5E-299 T 23-04-2016 IPR010132 ATPase, type I secretion system, HlyB GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 RPE_RS13575 f897a7a9e4f930f21e72be9073193c82 459 Pfam PF01476 LysM domain 158 199 2.3E-10 T 23-04-2016 IPR018392 LysM domain RPE_RS13575 f897a7a9e4f930f21e72be9073193c82 459 Pfam PF01476 LysM domain 223 266 4.0E-9 T 23-04-2016 IPR018392 LysM domain RPE_RS13575 f897a7a9e4f930f21e72be9073193c82 459 PANTHER PTHR21666 337 457 2.9E-42 T 23-04-2016 RPE_RS13575 f897a7a9e4f930f21e72be9073193c82 459 SUPERFAMILY SSF54106 222 266 3.53E-8 T 23-04-2016 IPR018392 LysM domain RPE_RS13575 f897a7a9e4f930f21e72be9073193c82 459 SUPERFAMILY SSF51261 299 456 2.82E-49 T 23-04-2016 IPR011055 Duplicated hybrid motif RPE_RS13575 f897a7a9e4f930f21e72be9073193c82 459 Pfam PF01551 Peptidase family M23 357 452 1.1E-30 T 23-04-2016 IPR016047 Peptidase M23 RPE_RS13575 f897a7a9e4f930f21e72be9073193c82 459 Gene3D G3DSA:3.10.350.10 160 200 9.0E-12 T 23-04-2016 IPR018392 LysM domain RPE_RS13575 f897a7a9e4f930f21e72be9073193c82 459 SMART SM00257 155 199 3.0E-9 T 23-04-2016 IPR018392 LysM domain RPE_RS13575 f897a7a9e4f930f21e72be9073193c82 459 SMART SM00257 222 266 9.6E-11 T 23-04-2016 IPR018392 LysM domain RPE_RS13575 f897a7a9e4f930f21e72be9073193c82 459 Gene3D G3DSA:2.70.70.10 319 457 3.5E-43 T 23-04-2016 RPE_RS13575 f897a7a9e4f930f21e72be9073193c82 459 SUPERFAMILY SSF54106 156 199 1.26E-7 T 23-04-2016 IPR018392 LysM domain RPE_RS13575 f897a7a9e4f930f21e72be9073193c82 459 Gene3D G3DSA:3.10.350.10 222 267 1.2E-13 T 23-04-2016 IPR018392 LysM domain RPE_RS23985 f8f19f9e5c80fb09ca4e6ec1ac969373 129 PANTHER PTHR11803:SF19 1 126 7.5E-72 T 23-04-2016 RPE_RS23985 f8f19f9e5c80fb09ca4e6ec1ac969373 129 Pfam PF01042 Endoribonuclease L-PSP 13 124 4.2E-27 T 23-04-2016 IPR006175 YjgF/YER057c/UK114 family RPE_RS23985 f8f19f9e5c80fb09ca4e6ec1ac969373 129 SUPERFAMILY SSF55298 1 126 8.95E-38 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like RPE_RS23985 f8f19f9e5c80fb09ca4e6ec1ac969373 129 Gene3D G3DSA:3.30.1330.40 1 126 2.5E-40 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like RPE_RS23985 f8f19f9e5c80fb09ca4e6ec1ac969373 129 PANTHER PTHR11803 1 126 7.5E-72 T 23-04-2016 IPR006175 YjgF/YER057c/UK114 family RPE_RS07410 0b08253be830c28ab36b68c2432f9139 256 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS07410 0b08253be830c28ab36b68c2432f9139 256 PANTHER PTHR24220:SF483 11 250 2.6E-142 T 23-04-2016 RPE_RS07410 0b08253be830c28ab36b68c2432f9139 256 Pfam PF00005 ABC transporter 25 175 5.5E-31 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS07410 0b08253be830c28ab36b68c2432f9139 256 Gene3D G3DSA:3.40.50.300 5 239 1.2E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS07410 0b08253be830c28ab36b68c2432f9139 256 SMART SM00382 34 223 3.6E-16 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS07410 0b08253be830c28ab36b68c2432f9139 256 SUPERFAMILY SSF52540 7 237 1.33E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS07410 0b08253be830c28ab36b68c2432f9139 256 PANTHER PTHR24220 11 250 2.6E-142 T 23-04-2016 RPE_RS01310 37eedd60d55d3ea5c0fe9b03062436d2 928 Gene3D G3DSA:3.30.460.10 67 117 7.6E-5 T 23-04-2016 RPE_RS01310 37eedd60d55d3ea5c0fe9b03062436d2 928 SUPERFAMILY SSF55021 734 789 2.04E-8 T 23-04-2016 RPE_RS01310 37eedd60d55d3ea5c0fe9b03062436d2 928 SUPERFAMILY SSF81301 12 201 1.24E-31 T 23-04-2016 RPE_RS01310 37eedd60d55d3ea5c0fe9b03062436d2 928 SMART SM00471 491 639 2.1E-4 T 23-04-2016 IPR003607 HD/PDEase domain RPE_RS01310 37eedd60d55d3ea5c0fe9b03062436d2 928 SUPERFAMILY SSF55021 844 916 1.46E-13 T 23-04-2016 RPE_RS01310 37eedd60d55d3ea5c0fe9b03062436d2 928 SUPERFAMILY SSF81891 399 639 1.92E-24 T 23-04-2016 RPE_RS01310 37eedd60d55d3ea5c0fe9b03062436d2 928 Gene3D G3DSA:1.10.3210.10 465 661 7.0E-28 T 23-04-2016 IPR006674 HD domain RPE_RS01310 37eedd60d55d3ea5c0fe9b03062436d2 928 PANTHER PTHR13734:SF45 144 701 2.1E-108 T 23-04-2016 RPE_RS01310 37eedd60d55d3ea5c0fe9b03062436d2 928 Gene3D G3DSA:3.30.460.10 118 194 8.8E-7 T 23-04-2016 RPE_RS01310 37eedd60d55d3ea5c0fe9b03062436d2 928 SUPERFAMILY SSF81593 218 340 6.59E-9 T 23-04-2016 RPE_RS01310 37eedd60d55d3ea5c0fe9b03062436d2 928 Pfam PF01842 ACT domain 847 898 4.9E-8 T 23-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 RPE_RS01310 37eedd60d55d3ea5c0fe9b03062436d2 928 PANTHER PTHR13734 144 701 2.1E-108 T 23-04-2016 RPE_RS01310 37eedd60d55d3ea5c0fe9b03062436d2 928 Gene3D G3DSA:3.30.70.260 844 901 9.1E-16 T 23-04-2016 RPE_RS01310 37eedd60d55d3ea5c0fe9b03062436d2 928 Gene3D G3DSA:3.30.70.260 736 784 4.9E-4 T 23-04-2016 RPE_RS01310 37eedd60d55d3ea5c0fe9b03062436d2 928 PIRSF PIRSF006288 26 927 0.0 T 23-04-2016 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 RPE_RS01310 37eedd60d55d3ea5c0fe9b03062436d2 928 Pfam PF08335 GlnD PII-uridylyltransferase 209 347 2.2E-36 T 23-04-2016 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 RPE_RS01310 37eedd60d55d3ea5c0fe9b03062436d2 928 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 51 917 2.4E-286 T 23-04-2016 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 RPE_RS01310 37eedd60d55d3ea5c0fe9b03062436d2 928 Pfam PF01966 HD domain 496 593 5.3E-10 T 23-04-2016 IPR006674 HD domain RPE_RS01310 37eedd60d55d3ea5c0fe9b03062436d2 928 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 928 315.332 T 23-04-2016 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 RPE_RS01310 37eedd60d55d3ea5c0fe9b03062436d2 928 Pfam PF01909 Nucleotidyltransferase domain 103 130 1.5E-4 T 23-04-2016 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 RPE_RS00630 272e65efd00e5893980e7a9736200358 112 PANTHER PTHR11938:SF101 1 80 4.1E-37 T 23-04-2016 RPE_RS00630 272e65efd00e5893980e7a9736200358 112 SUPERFAMILY SSF54862 3 101 1.76E-24 T 23-04-2016 RPE_RS00630 272e65efd00e5893980e7a9736200358 112 PANTHER PTHR11938 1 80 4.1E-37 T 23-04-2016 RPE_RS00630 272e65efd00e5893980e7a9736200358 112 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RPE_RS00630 272e65efd00e5893980e7a9736200358 112 Gene3D G3DSA:3.30.70.20 3 97 1.0E-21 T 23-04-2016 RPE_RS00630 272e65efd00e5893980e7a9736200358 112 PRINTS PR00354 7Fe ferredoxin signature 35 52 5.4E-19 T 23-04-2016 IPR000813 7Fe ferredoxin GO:0009055 RPE_RS00630 272e65efd00e5893980e7a9736200358 112 PRINTS PR00354 7Fe ferredoxin signature 19 29 5.4E-19 T 23-04-2016 IPR000813 7Fe ferredoxin GO:0009055 RPE_RS00630 272e65efd00e5893980e7a9736200358 112 PRINTS PR00354 7Fe ferredoxin signature 9 19 5.4E-19 T 23-04-2016 IPR000813 7Fe ferredoxin GO:0009055 RPE_RS00630 272e65efd00e5893980e7a9736200358 112 Pfam PF00037 4Fe-4S binding domain 34 56 1.5E-7 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RPE_RS00630 272e65efd00e5893980e7a9736200358 112 Pfam PF11953 Domain of unknown function (DUF3470) 64 105 2.6E-17 T 23-04-2016 IPR022569 Ferredoxin, C-terminal RPE_RS17295 5dbcb14ee2305bb949d0d0ee4f04b0de 347 Pfam PF13439 Glycosyltransferase Family 4 14 165 1.5E-17 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RPE_RS17295 5dbcb14ee2305bb949d0d0ee4f04b0de 347 PANTHER PTHR12526:SF363 1 331 3.8E-85 T 23-04-2016 RPE_RS17295 5dbcb14ee2305bb949d0d0ee4f04b0de 347 PANTHER PTHR12526 1 331 3.8E-85 T 23-04-2016 RPE_RS17295 5dbcb14ee2305bb949d0d0ee4f04b0de 347 SUPERFAMILY SSF53756 1 326 4.31E-63 T 23-04-2016 RPE_RS17295 5dbcb14ee2305bb949d0d0ee4f04b0de 347 Pfam PF13692 Glycosyl transferases group 1 180 292 2.5E-19 T 23-04-2016 RPE_RS17295 5dbcb14ee2305bb949d0d0ee4f04b0de 347 Gene3D G3DSA:3.40.50.2000 178 289 1.1E-14 T 23-04-2016 RPE_RS08450 1297abbc801b260e11f99fe3f820b3e4 301 Gene3D G3DSA:3.40.1190.20 1 293 1.5E-56 T 23-04-2016 IPR029056 Ribokinase-like RPE_RS08450 1297abbc801b260e11f99fe3f820b3e4 301 Pfam PF00294 pfkB family carbohydrate kinase 4 282 3.2E-24 T 23-04-2016 IPR011611 Carbohydrate kinase PfkB RPE_RS08450 1297abbc801b260e11f99fe3f820b3e4 301 PRINTS PR00990 Ribokinase signature 199 210 3.1E-6 T 23-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 RPE_RS08450 1297abbc801b260e11f99fe3f820b3e4 301 PRINTS PR00990 Ribokinase signature 162 177 3.1E-6 T 23-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 RPE_RS08450 1297abbc801b260e11f99fe3f820b3e4 301 PRINTS PR00990 Ribokinase signature 5 26 3.1E-6 T 23-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 RPE_RS08450 1297abbc801b260e11f99fe3f820b3e4 301 PRINTS PR00990 Ribokinase signature 32 51 3.1E-6 T 23-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 RPE_RS08450 1297abbc801b260e11f99fe3f820b3e4 301 PANTHER PTHR10584 1 294 5.9E-50 T 23-04-2016 RPE_RS08450 1297abbc801b260e11f99fe3f820b3e4 301 PANTHER PTHR10584:SF184 1 294 5.9E-50 T 23-04-2016 RPE_RS08450 1297abbc801b260e11f99fe3f820b3e4 301 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 232 245 - T 23-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RPE_RS08450 1297abbc801b260e11f99fe3f820b3e4 301 SUPERFAMILY SSF53613 1 294 1.37E-57 T 23-04-2016 IPR029056 Ribokinase-like RPE_RS20730 3e864474969ecc0d4276a75a54c671c4 297 Gene3D G3DSA:3.40.50.2020 3 153 1.8E-31 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RPE_RS20730 3e864474969ecc0d4276a75a54c671c4 297 SUPERFAMILY SSF53271 80 270 4.88E-32 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RPE_RS20730 3e864474969ecc0d4276a75a54c671c4 297 SMART SM01400 1 112 7.1E-25 T 23-04-2016 RPE_RS20730 3e864474969ecc0d4276a75a54c671c4 297 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 8 291 5.4E-58 T 23-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 RPE_RS20730 3e864474969ecc0d4276a75a54c671c4 297 Pfam PF00156 Phosphoribosyl transferase domain 146 244 5.8E-15 T 23-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 RPE_RS20730 3e864474969ecc0d4276a75a54c671c4 297 Gene3D G3DSA:3.40.50.2020 154 276 1.2E-25 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RPE_RS20730 3e864474969ecc0d4276a75a54c671c4 297 PANTHER PTHR10210 9 281 2.5E-67 T 23-04-2016 RPE_RS20730 3e864474969ecc0d4276a75a54c671c4 297 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 2 108 5.8E-16 T 23-04-2016 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 RPE_RS20730 3e864474969ecc0d4276a75a54c671c4 297 PANTHER PTHR10210:SF41 9 281 2.5E-67 T 23-04-2016 RPE_RS16600 5347c82bba8767b64bcdd2b2f4049ae2 157 TIGRFAM TIGR00166 S6: ribosomal protein bS6 2 94 2.5E-23 T 23-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 RPE_RS16600 5347c82bba8767b64bcdd2b2f4049ae2 157 SUPERFAMILY SSF54995 1 104 5.89E-32 T 23-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 RPE_RS16600 5347c82bba8767b64bcdd2b2f4049ae2 157 PANTHER PTHR21011 1 126 2.1E-28 T 23-04-2016 RPE_RS16600 5347c82bba8767b64bcdd2b2f4049ae2 157 Pfam PF01250 Ribosomal protein S6 4 92 8.1E-25 T 23-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 RPE_RS16600 5347c82bba8767b64bcdd2b2f4049ae2 157 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 95 19.341 T 23-04-2016 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 RPE_RS16600 5347c82bba8767b64bcdd2b2f4049ae2 157 Gene3D G3DSA:3.30.70.60 1 104 1.3E-33 T 23-04-2016 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 RPE_RS00765 6586e9f416961289b686f98fc8935ec0 267 PANTHER PTHR11907 34 261 1.7E-55 T 23-04-2016 RPE_RS00765 6586e9f416961289b686f98fc8935ec0 267 Pfam PF00156 Phosphoribosyl transferase domain 199 259 5.0E-9 T 23-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 RPE_RS00765 6586e9f416961289b686f98fc8935ec0 267 Gene3D G3DSA:3.40.50.2020 103 260 1.4E-34 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RPE_RS00765 6586e9f416961289b686f98fc8935ec0 267 SUPERFAMILY SSF53271 76 259 3.15E-33 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RPE_RS00765 6586e9f416961289b686f98fc8935ec0 267 PANTHER PTHR11907:SF9 34 261 1.7E-55 T 23-04-2016 RPE_RS12845 d5f3d2c8fff0abf7ccfba87a8d6403d5 847 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 40 847 8.2E-216 T 23-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 RPE_RS12845 d5f3d2c8fff0abf7ccfba87a8d6403d5 847 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 12 847 23.851 T 23-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 RPE_RS12845 d5f3d2c8fff0abf7ccfba87a8d6403d5 847 Pfam PF01103 Surface antigen 460 847 1.3E-96 T 23-04-2016 IPR000184 Bacterial surface antigen (D15) GO:0019867 RPE_RS12845 d5f3d2c8fff0abf7ccfba87a8d6403d5 847 Pfam PF07244 Surface antigen variable number repeat 189 275 1.4E-14 T 23-04-2016 IPR010827 Surface antigen variable number GO:0019867 RPE_RS12845 d5f3d2c8fff0abf7ccfba87a8d6403d5 847 Pfam PF07244 Surface antigen variable number repeat 107 184 1.3E-13 T 23-04-2016 IPR010827 Surface antigen variable number GO:0019867 RPE_RS12845 d5f3d2c8fff0abf7ccfba87a8d6403d5 847 Pfam PF07244 Surface antigen variable number repeat 278 357 3.7E-7 T 23-04-2016 IPR010827 Surface antigen variable number GO:0019867 RPE_RS12845 d5f3d2c8fff0abf7ccfba87a8d6403d5 847 Pfam PF07244 Surface antigen variable number repeat 361 432 6.2E-12 T 23-04-2016 IPR010827 Surface antigen variable number GO:0019867 RPE_RS12845 d5f3d2c8fff0abf7ccfba87a8d6403d5 847 PIRSF PIRSF006076 5 847 3.7E-261 T 23-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 RPE_RS12845 d5f3d2c8fff0abf7ccfba87a8d6403d5 847 PANTHER PTHR12815 23 565 6.4E-207 T 23-04-2016 RPE_RS12845 d5f3d2c8fff0abf7ccfba87a8d6403d5 847 PANTHER PTHR12815 793 847 6.4E-207 T 23-04-2016 RPE_RS12845 d5f3d2c8fff0abf7ccfba87a8d6403d5 847 PANTHER PTHR12815 606 769 6.4E-207 T 23-04-2016 RPE_RS12845 d5f3d2c8fff0abf7ccfba87a8d6403d5 847 PANTHER PTHR12815:SF11 23 565 6.4E-207 T 23-04-2016 RPE_RS12845 d5f3d2c8fff0abf7ccfba87a8d6403d5 847 PANTHER PTHR12815:SF11 793 847 6.4E-207 T 23-04-2016 RPE_RS12845 d5f3d2c8fff0abf7ccfba87a8d6403d5 847 PANTHER PTHR12815:SF11 606 769 6.4E-207 T 23-04-2016 RPE_RS12845 d5f3d2c8fff0abf7ccfba87a8d6403d5 847 Gene3D G3DSA:2.40.160.50 800 842 2.7E-17 T 23-04-2016 RPE_RS12845 d5f3d2c8fff0abf7ccfba87a8d6403d5 847 Gene3D G3DSA:2.40.160.50 398 768 2.7E-17 T 23-04-2016 RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 SUPERFAMILY SSF55785 48 150 7.25E-29 T 23-04-2016 IPR000014 PAS domain RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 Gene3D G3DSA:3.30.70.270 797 961 1.4E-47 T 23-04-2016 RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 SMART SM00052 965 1207 4.6E-110 T 23-04-2016 IPR001633 EAL domain RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 PANTHER PTHR10799 374 525 2.0E-86 T 23-04-2016 RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 PANTHER PTHR10799 826 1065 2.0E-86 T 23-04-2016 RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 PANTHER PTHR10799:SF657 374 525 2.0E-86 T 23-04-2016 RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 PANTHER PTHR10799:SF657 826 1065 2.0E-86 T 23-04-2016 RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 Gene3D G3DSA:3.30.450.20 538 657 1.1E-9 T 23-04-2016 RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 Gene3D G3DSA:3.30.450.20 667 784 2.2E-11 T 23-04-2016 RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 Gene3D G3DSA:3.30.450.20 408 528 5.0E-11 T 23-04-2016 RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 Gene3D G3DSA:3.30.450.20 284 405 6.2E-11 T 23-04-2016 RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 Pfam PF08448 PAS fold 170 285 3.2E-7 T 23-04-2016 IPR013656 PAS fold-4 RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 Pfam PF00563 EAL domain 971 1202 1.7E-70 T 23-04-2016 IPR001633 EAL domain RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 Gene3D G3DSA:3.30.450.20 48 147 4.7E-25 T 23-04-2016 RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 Pfam PF12860 PAS fold 553 660 6.0E-25 T 23-04-2016 RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 Pfam PF12860 PAS fold 418 533 4.6E-34 T 23-04-2016 RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 Pfam PF12860 PAS fold 682 788 7.3E-21 T 23-04-2016 RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 Pfam PF12860 PAS fold 296 410 1.5E-15 T 23-04-2016 RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 Gene3D G3DSA:3.20.20.450 968 1208 8.6E-91 T 23-04-2016 IPR001633 EAL domain RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 Gene3D G3DSA:3.30.450.20 148 281 9.3E-20 T 23-04-2016 RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 Pfam PF13426 PAS domain 49 149 3.5E-15 T 23-04-2016 IPR000014 PAS domain RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 SMART SM00091 34 105 1.6E-5 T 23-04-2016 IPR000014 PAS domain RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 SMART SM00091 162 227 2.0 T 23-04-2016 IPR000014 PAS domain RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 SMART SM00091 676 742 0.029 T 23-04-2016 IPR000014 PAS domain RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 SMART SM00091 412 479 0.27 T 23-04-2016 IPR000014 PAS domain RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 SMART SM00091 288 360 2.1 T 23-04-2016 IPR000014 PAS domain RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 SMART SM00091 547 618 65.0 T 23-04-2016 IPR000014 PAS domain RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 Pfam PF00990 Diguanylate cyclase, GGDEF domain 796 950 5.8E-41 T 23-04-2016 IPR000160 GGDEF domain RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 SUPERFAMILY SSF141868 970 1209 1.44E-85 T 23-04-2016 IPR001633 EAL domain RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 SUPERFAMILY SSF55785 284 405 3.84E-8 T 23-04-2016 IPR000014 PAS domain RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 SUPERFAMILY SSF55785 534 655 1.16E-5 T 23-04-2016 IPR000014 PAS domain RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 38 157 3.5E-21 T 23-04-2016 IPR000014 PAS domain RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 158 288 2.3E-9 T 23-04-2016 IPR000014 PAS domain RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 SUPERFAMILY SSF55785 406 526 4.38E-8 T 23-04-2016 IPR000014 PAS domain RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 SMART SM00086 241 283 27.0 T 23-04-2016 IPR001610 PAC motif RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 SMART SM00086 108 150 1.6E-6 T 23-04-2016 IPR001610 PAC motif RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 SMART SM00086 622 657 540.0 T 23-04-2016 IPR001610 PAC motif RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 SUPERFAMILY SSF55073 801 957 2.35E-41 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 SUPERFAMILY SSF55785 147 281 4.64E-20 T 23-04-2016 IPR000014 PAS domain RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 795 952 5.2E-34 T 23-04-2016 IPR000160 GGDEF domain RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 SMART SM00267 785 955 1.0E-50 T 23-04-2016 IPR000160 GGDEF domain RPE_RS24810 58b2a2a24a72b453562813337e158685 1223 SUPERFAMILY SSF55785 662 783 2.27E-9 T 23-04-2016 IPR000014 PAS domain RPE_RS08720 ae7bb1d1d3bcba1006b993ccc7eaba4b 129 Gene3D G3DSA:3.10.580.10 1 125 6.3E-29 T 23-04-2016 RPE_RS08720 ae7bb1d1d3bcba1006b993ccc7eaba4b 129 PANTHER PTHR11911 1 123 9.0E-24 T 23-04-2016 RPE_RS08720 ae7bb1d1d3bcba1006b993ccc7eaba4b 129 SUPERFAMILY SSF54631 1 125 4.3E-30 T 23-04-2016 RPE_RS08720 ae7bb1d1d3bcba1006b993ccc7eaba4b 129 Pfam PF00571 CBS domain 1 48 6.2E-8 T 23-04-2016 IPR000644 CBS domain RPE_RS08720 ae7bb1d1d3bcba1006b993ccc7eaba4b 129 Pfam PF00571 CBS domain 69 124 1.5E-15 T 23-04-2016 IPR000644 CBS domain RPE_RS08720 ae7bb1d1d3bcba1006b993ccc7eaba4b 129 SMART SM00116 76 124 2.8E-11 T 23-04-2016 IPR000644 CBS domain RPE_RS08720 ae7bb1d1d3bcba1006b993ccc7eaba4b 129 SMART SM00116 4 51 1.3E-4 T 23-04-2016 IPR000644 CBS domain RPE_RS19575 3877019750dfce43db8da03185fc91e8 477 Pfam PF00171 Aldehyde dehydrogenase family 21 445 2.3E-84 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RPE_RS19575 3877019750dfce43db8da03185fc91e8 477 PANTHER PTHR11699 10 475 3.5E-177 T 23-04-2016 RPE_RS19575 3877019750dfce43db8da03185fc91e8 477 Gene3D G3DSA:3.40.309.10 234 426 3.5E-54 T 23-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RPE_RS19575 3877019750dfce43db8da03185fc91e8 477 Gene3D G3DSA:3.40.605.10 15 233 9.3E-50 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RPE_RS19575 3877019750dfce43db8da03185fc91e8 477 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 247 258 - T 23-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 RPE_RS19575 3877019750dfce43db8da03185fc91e8 477 PIRSF PIRSF036492 3 477 1.8E-163 T 23-04-2016 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0004030|GO:0006081|GO:0055114 RPE_RS19575 3877019750dfce43db8da03185fc91e8 477 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 219 226 - T 23-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 RPE_RS19575 3877019750dfce43db8da03185fc91e8 477 SUPERFAMILY SSF53720 5 471 3.93E-111 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RPE_RS19575 3877019750dfce43db8da03185fc91e8 477 PANTHER PTHR11699:SF15 10 475 3.5E-177 T 23-04-2016 RPE_RS16585 dad98eabfa3af67bf63876dd52ff35a4 245 PANTHER PTHR24322:SF328 152 184 1.6E-52 T 23-04-2016 RPE_RS16585 dad98eabfa3af67bf63876dd52ff35a4 245 PANTHER PTHR24322:SF328 11 136 1.6E-52 T 23-04-2016 RPE_RS16585 dad98eabfa3af67bf63876dd52ff35a4 245 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 9 243 1.4E-93 T 23-04-2016 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RPE_RS16585 dad98eabfa3af67bf63876dd52ff35a4 245 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 188 1.0E-6 T 23-04-2016 RPE_RS16585 dad98eabfa3af67bf63876dd52ff35a4 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 2.3E-10 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS16585 dad98eabfa3af67bf63876dd52ff35a4 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 2.3E-10 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS16585 dad98eabfa3af67bf63876dd52ff35a4 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 2.3E-10 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS16585 dad98eabfa3af67bf63876dd52ff35a4 245 PANTHER PTHR24322 152 184 1.6E-52 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS16585 dad98eabfa3af67bf63876dd52ff35a4 245 PANTHER PTHR24322 11 136 1.6E-52 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS16585 dad98eabfa3af67bf63876dd52ff35a4 245 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RPE_RS16585 dad98eabfa3af67bf63876dd52ff35a4 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 3.3E-45 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS16585 dad98eabfa3af67bf63876dd52ff35a4 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 3.3E-45 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS16585 dad98eabfa3af67bf63876dd52ff35a4 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 3.3E-45 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS16585 dad98eabfa3af67bf63876dd52ff35a4 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 3.3E-45 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS16585 dad98eabfa3af67bf63876dd52ff35a4 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 3.3E-45 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS16585 dad98eabfa3af67bf63876dd52ff35a4 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.3E-45 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS16585 dad98eabfa3af67bf63876dd52ff35a4 245 SUPERFAMILY SSF51735 6 244 4.84E-85 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS16585 dad98eabfa3af67bf63876dd52ff35a4 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 242 5.8E-68 T 23-04-2016 RPE_RS16585 dad98eabfa3af67bf63876dd52ff35a4 245 Gene3D G3DSA:3.40.50.720 1 244 8.0E-88 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS08945 b890f0f0205e85ceaa5d6696ca15318e 243 PANTHER PTHR24567:SF28 7 235 2.7E-30 T 23-04-2016 RPE_RS08945 b890f0f0205e85ceaa5d6696ca15318e 243 SUPERFAMILY SSF51206 17 143 3.54E-15 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like RPE_RS08945 b890f0f0205e85ceaa5d6696ca15318e 243 Pfam PF13545 Crp-like helix-turn-helix domain 153 226 5.7E-11 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RPE_RS08945 b890f0f0205e85ceaa5d6696ca15318e 243 SUPERFAMILY SSF46785 150 227 4.81E-13 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS08945 b890f0f0205e85ceaa5d6696ca15318e 243 SMART SM00419 172 220 3.9E-6 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RPE_RS08945 b890f0f0205e85ceaa5d6696ca15318e 243 Gene3D G3DSA:2.60.120.10 16 127 1.5E-10 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS08945 b890f0f0205e85ceaa5d6696ca15318e 243 Pfam PF00027 Cyclic nucleotide-binding domain 34 118 2.5E-8 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RPE_RS08945 b890f0f0205e85ceaa5d6696ca15318e 243 PANTHER PTHR24567 7 235 2.7E-30 T 23-04-2016 RPE_RS08945 b890f0f0205e85ceaa5d6696ca15318e 243 Gene3D G3DSA:1.10.10.10 150 227 6.4E-11 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS06885 c9b685684a724c754c83270cd39b2027 73 SUPERFAMILY SSF144266 9 58 5.1E-5 T 23-04-2016 RPE_RS06885 c9b685684a724c754c83270cd39b2027 73 Gene3D G3DSA:1.20.5.300 4 53 8.8E-15 T 23-04-2016 RPE_RS06885 c9b685684a724c754c83270cd39b2027 73 Hamap MF_00715 Protein SlyX [slyX]. 7 73 15.059 T 23-04-2016 IPR007236 SlyX RPE_RS06885 c9b685684a724c754c83270cd39b2027 73 Pfam PF04102 SlyX 9 73 1.6E-24 T 23-04-2016 IPR007236 SlyX RPE_RS06885 c9b685684a724c754c83270cd39b2027 73 PANTHER PTHR36508 3 73 8.5E-22 T 23-04-2016 RPE_RS17640 d9981cae698cda4a9f5978d5a6b39843 563 Gene3D G3DSA:1.10.287.950 320 527 4.8E-50 T 23-04-2016 RPE_RS17640 d9981cae698cda4a9f5978d5a6b39843 563 PANTHER PTHR32089 153 249 2.7E-194 T 23-04-2016 RPE_RS17640 d9981cae698cda4a9f5978d5a6b39843 563 PANTHER PTHR32089 281 560 2.7E-194 T 23-04-2016 RPE_RS17640 d9981cae698cda4a9f5978d5a6b39843 563 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 373 556 1.0E-38 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS17640 d9981cae698cda4a9f5978d5a6b39843 563 SMART SM00283 303 557 3.5E-52 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS17640 d9981cae698cda4a9f5978d5a6b39843 563 SUPERFAMILY SSF58104 280 556 1.14E-64 T 23-04-2016 RPE_RS17640 d9981cae698cda4a9f5978d5a6b39843 563 SMART SM00304 214 267 5.9E-4 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS17640 d9981cae698cda4a9f5978d5a6b39843 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 401 428 4.4E-20 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS17640 d9981cae698cda4a9f5978d5a6b39843 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 478 507 4.4E-20 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS17640 d9981cae698cda4a9f5978d5a6b39843 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 324 353 4.4E-20 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS17640 d9981cae698cda4a9f5978d5a6b39843 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 430 459 4.4E-20 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS17640 d9981cae698cda4a9f5978d5a6b39843 563 Pfam PF00672 HAMP domain 195 262 7.3E-8 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS17640 d9981cae698cda4a9f5978d5a6b39843 563 PANTHER PTHR32089:SF40 153 249 2.7E-194 T 23-04-2016 RPE_RS17640 d9981cae698cda4a9f5978d5a6b39843 563 PANTHER PTHR32089:SF40 281 560 2.7E-194 T 23-04-2016 RPE_RS17640 d9981cae698cda4a9f5978d5a6b39843 563 Pfam PF12729 Four helix bundle sensory module for signal transduction 4 187 6.2E-28 T 23-04-2016 IPR024478 4HB MCP domain RPE_RS17640 d9981cae698cda4a9f5978d5a6b39843 563 SUPERFAMILY SSF158472 215 263 2.35E-5 T 23-04-2016 RPE_RS23500 012bc4fb35d189494fd3140c997a549e 273 SUPERFAMILY SSF51182 38 189 4.45E-15 T 23-04-2016 IPR011051 RmlC-like cupin domain RPE_RS23500 012bc4fb35d189494fd3140c997a549e 273 PANTHER PTHR11019:SF66 41 270 1.4E-73 T 23-04-2016 RPE_RS23500 012bc4fb35d189494fd3140c997a549e 273 SMART SM00342 180 262 3.9E-18 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RPE_RS23500 012bc4fb35d189494fd3140c997a549e 273 Gene3D G3DSA:1.10.10.60 159 216 1.7E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS23500 012bc4fb35d189494fd3140c997a549e 273 Pfam PF12833 Helix-turn-helix domain 186 262 1.1E-19 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RPE_RS23500 012bc4fb35d189494fd3140c997a549e 273 Gene3D G3DSA:1.10.10.60 225 263 1.6E-7 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS23500 012bc4fb35d189494fd3140c997a549e 273 PANTHER PTHR11019 41 270 1.4E-73 T 23-04-2016 RPE_RS23500 012bc4fb35d189494fd3140c997a549e 273 SUPERFAMILY SSF46689 220 264 1.52E-7 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS23500 012bc4fb35d189494fd3140c997a549e 273 Pfam PF02311 AraC-like ligand binding domain 39 87 3.6E-5 T 23-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 RPE_RS23500 012bc4fb35d189494fd3140c997a549e 273 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 246 262 8.4E-5 T 23-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RPE_RS23500 012bc4fb35d189494fd3140c997a549e 273 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 231 246 8.4E-5 T 23-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RPE_RS23500 012bc4fb35d189494fd3140c997a549e 273 Gene3D G3DSA:2.60.120.10 37 98 6.6E-9 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS10005 69ad052ad46845e72e1f987e76f4ee02 587 Pfam PF02540 NAD synthase 281 536 1.6E-71 T 23-04-2016 IPR022310 NAD/GMP synthase RPE_RS10005 69ad052ad46845e72e1f987e76f4ee02 587 SUPERFAMILY SSF56317 9 254 2.35E-59 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RPE_RS10005 69ad052ad46845e72e1f987e76f4ee02 587 PANTHER PTHR23090 7 559 1.2E-139 T 23-04-2016 RPE_RS10005 69ad052ad46845e72e1f987e76f4ee02 587 Pfam PF00795 Carbon-nitrogen hydrolase 12 252 3.7E-25 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RPE_RS10005 69ad052ad46845e72e1f987e76f4ee02 587 ProSitePatterns PS00920 Nitrilases / cyanide hydratase signature 1. 42 57 - T 23-04-2016 IPR000132 Nitrilase/cyanide hydratase, conserved site GO:0016810 RPE_RS10005 69ad052ad46845e72e1f987e76f4ee02 587 Gene3D G3DSA:3.40.50.620 279 544 7.1E-73 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS10005 69ad052ad46845e72e1f987e76f4ee02 587 SUPERFAMILY SSF52402 278 545 4.89E-74 T 23-04-2016 RPE_RS10005 69ad052ad46845e72e1f987e76f4ee02 587 Gene3D G3DSA:3.60.110.10 12 253 1.8E-58 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RPE_RS10005 69ad052ad46845e72e1f987e76f4ee02 587 TIGRFAM TIGR00552 nadE: NAD+ synthetase 286 543 9.5E-59 T 23-04-2016 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|UniPathway: UPA00253 RPE_RS23365 773ab93de0805d46859b27959bc624a4 161 Gene3D G3DSA:2.40.50.180 63 98 1.7E-9 T 23-04-2016 RPE_RS23365 773ab93de0805d46859b27959bc624a4 161 SMART SM00260 19 160 1.4E-24 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS23365 773ab93de0805d46859b27959bc624a4 161 SUPERFAMILY SSF50341 13 161 2.22E-30 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS23365 773ab93de0805d46859b27959bc624a4 161 Pfam PF01584 CheW-like domain 23 160 8.9E-29 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS23365 773ab93de0805d46859b27959bc624a4 161 PANTHER PTHR22617 19 161 2.1E-33 T 23-04-2016 RPE_RS23945 f334f3026f3f34e39219da36135d4dc7 292 PANTHER PTHR30477:SF3 6 291 1.6E-93 T 23-04-2016 RPE_RS23945 f334f3026f3f34e39219da36135d4dc7 292 SUPERFAMILY SSF81345 11 270 1.31E-22 T 23-04-2016 IPR029022 ABC transporter, BtuC-like RPE_RS23945 f334f3026f3f34e39219da36135d4dc7 292 Pfam PF00950 ABC 3 transport family 16 274 7.6E-51 T 23-04-2016 IPR001626 ABC-3 GO:0005524|GO:0006810|GO:0016020|GO:0042626 RPE_RS23945 f334f3026f3f34e39219da36135d4dc7 292 PANTHER PTHR30477 6 291 1.6E-93 T 23-04-2016 RPE_RS06240 d16c4584b50d6e427cf1057e04576050 242 PANTHER PTHR30485 8 242 9.0E-104 T 23-04-2016 RPE_RS06240 d16c4584b50d6e427cf1057e04576050 242 ProSitePatterns PS00883 Nickel-dependent hydrogenases b-type cytochrome subunit signature 2. 193 210 - T 23-04-2016 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 RPE_RS06240 d16c4584b50d6e427cf1057e04576050 242 Pfam PF01292 Prokaryotic cytochrome b561 28 232 6.8E-31 T 23-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 RPE_RS06240 d16c4584b50d6e427cf1057e04576050 242 PANTHER PTHR30485:SF0 8 242 9.0E-104 T 23-04-2016 RPE_RS06240 d16c4584b50d6e427cf1057e04576050 242 TIGRFAM TIGR02125 CytB-hydogenase: Ni/Fe-hydrogenase, b-type cytochrome subunit 26 235 5.6E-71 T 23-04-2016 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 RPE_RS06240 d16c4584b50d6e427cf1057e04576050 242 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 193 215 5.3E-48 T 23-04-2016 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 RPE_RS06240 d16c4584b50d6e427cf1057e04576050 242 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 68 92 5.3E-48 T 23-04-2016 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 RPE_RS06240 d16c4584b50d6e427cf1057e04576050 242 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 224 237 5.3E-48 T 23-04-2016 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 RPE_RS06240 d16c4584b50d6e427cf1057e04576050 242 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 30 53 5.3E-48 T 23-04-2016 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 RPE_RS06240 d16c4584b50d6e427cf1057e04576050 242 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 146 165 5.3E-48 T 23-04-2016 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 RPE_RS06240 d16c4584b50d6e427cf1057e04576050 242 Gene3D G3DSA:1.20.950.20 22 232 1.0E-26 T 23-04-2016 RPE_RS06240 d16c4584b50d6e427cf1057e04576050 242 SUPERFAMILY SSF81342 22 235 4.79E-43 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 RPE_RS19565 974c6115fb0897609949a89efd8d88e5 641 Pfam PF00672 HAMP domain 312 380 2.3E-14 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS19565 974c6115fb0897609949a89efd8d88e5 641 PANTHER PTHR21021:SF19 396 640 1.3E-60 T 23-04-2016 RPE_RS19565 974c6115fb0897609949a89efd8d88e5 641 Pfam PF02743 Cache domain 38 294 9.3E-28 T 23-04-2016 IPR033479 Double Cache domain 1 RPE_RS19565 974c6115fb0897609949a89efd8d88e5 641 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 449 637 6.5E-49 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 RPE_RS19565 974c6115fb0897609949a89efd8d88e5 641 PANTHER PTHR21021 396 640 1.3E-60 T 23-04-2016 RPE_RS19565 974c6115fb0897609949a89efd8d88e5 641 SUPERFAMILY SSF158472 331 383 2.22E-9 T 23-04-2016 RPE_RS19565 974c6115fb0897609949a89efd8d88e5 641 SMART SM00304 331 384 1.6E-13 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS19565 974c6115fb0897609949a89efd8d88e5 641 SMART SM00331 421 637 3.1E-50 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 RPE_RS19565 974c6115fb0897609949a89efd8d88e5 641 SUPERFAMILY SSF81606 434 638 1.02E-10 T 23-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 RPE_RS19565 974c6115fb0897609949a89efd8d88e5 641 Gene3D G3DSA:3.30.450.20 158 308 5.0E-30 T 23-04-2016 RPE_RS01500 330006ae55574b7088a54d486daa8c9b 399 SUPERFAMILY SSF52210 251 395 1.2E-52 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RPE_RS01500 330006ae55574b7088a54d486daa8c9b 399 Pfam PF00549 CoA-ligase 272 391 1.1E-26 T 23-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RPE_RS01500 330006ae55574b7088a54d486daa8c9b 399 PIRSF PIRSF001554 1 398 9.7E-147 T 23-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RPE_RS01500 330006ae55574b7088a54d486daa8c9b 399 Gene3D G3DSA:3.30.1490.20 22 104 5.2E-32 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RPE_RS01500 330006ae55574b7088a54d486daa8c9b 399 PANTHER PTHR11815 1 399 1.1E-226 T 23-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RPE_RS01500 330006ae55574b7088a54d486daa8c9b 399 Hamap MF_00558 Succinyl-CoA ligase [ADP-forming] subunit beta [sucC]. 1 396 39.882 T 23-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RPE_RS01500 330006ae55574b7088a54d486daa8c9b 399 PANTHER PTHR11815:SF1 1 399 1.1E-226 T 23-04-2016 RPE_RS01500 330006ae55574b7088a54d486daa8c9b 399 Gene3D G3DSA:3.30.470.20 105 249 6.8E-56 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RPE_RS01500 330006ae55574b7088a54d486daa8c9b 399 SUPERFAMILY SSF56059 1 248 2.7E-74 T 23-04-2016 RPE_RS01500 330006ae55574b7088a54d486daa8c9b 399 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 395 1.4E-152 T 23-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RPE_RS01500 330006ae55574b7088a54d486daa8c9b 399 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 267 291 - T 23-04-2016 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RPE_RS01500 330006ae55574b7088a54d486daa8c9b 399 Gene3D G3DSA:3.40.50.261 252 393 5.3E-64 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RPE_RS01500 330006ae55574b7088a54d486daa8c9b 399 Pfam PF08442 ATP-grasp domain 2 212 9.9E-71 T 23-04-2016 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RPE_RS21270 355cba43e8f12542a644553f7f4371df 225 PANTHER PTHR23416:SF23 79 216 2.3E-30 T 23-04-2016 RPE_RS21270 355cba43e8f12542a644553f7f4371df 225 PANTHER PTHR23416 79 216 2.3E-30 T 23-04-2016 RPE_RS21270 355cba43e8f12542a644553f7f4371df 225 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 165 197 8.2E-9 T 23-04-2016 IPR001451 Hexapeptide repeat RPE_RS21270 355cba43e8f12542a644553f7f4371df 225 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 129 163 1.1E-4 T 23-04-2016 IPR001451 Hexapeptide repeat RPE_RS21270 355cba43e8f12542a644553f7f4371df 225 SUPERFAMILY SSF51161 7 215 2.77E-38 T 23-04-2016 IPR011004 Trimeric LpxA-like RPE_RS21270 355cba43e8f12542a644553f7f4371df 225 Gene3D G3DSA:2.160.10.10 97 220 3.5E-33 T 23-04-2016 RPE_RS21270 355cba43e8f12542a644553f7f4371df 225 Gene3D G3DSA:3.40.50.20 8 84 1.5E-7 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RPE_RS21270 355cba43e8f12542a644553f7f4371df 225 TIGRFAM TIGR03570 NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family 8 213 2.3E-58 T 23-04-2016 IPR020019 Sialic acid O-acyltransferase NeuD-like RPE_RS21270 355cba43e8f12542a644553f7f4371df 225 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 173 201 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 RPE_RS21270 355cba43e8f12542a644553f7f4371df 225 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 155 183 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 RPE_RS23960 d5087291aaf42cd8498e7cdf527bb322 338 Gene3D G3DSA:2.130.10.10 201 332 4.7E-18 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RPE_RS23960 d5087291aaf42cd8498e7cdf527bb322 338 Gene3D G3DSA:2.130.10.10 36 200 2.2E-16 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RPE_RS23960 d5087291aaf42cd8498e7cdf527bb322 338 SMART SM00320 211 249 1.5 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 RPE_RS23960 d5087291aaf42cd8498e7cdf527bb322 338 SMART SM00320 299 337 220.0 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 RPE_RS23960 d5087291aaf42cd8498e7cdf527bb322 338 SMART SM00320 57 90 420.0 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 RPE_RS23960 d5087291aaf42cd8498e7cdf527bb322 338 SMART SM00320 257 296 25.0 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 RPE_RS23960 d5087291aaf42cd8498e7cdf527bb322 338 SMART SM00320 131 168 67.0 T 23-04-2016 IPR001680 WD40 repeat GO:0005515 RPE_RS23960 d5087291aaf42cd8498e7cdf527bb322 338 Pfam PF12894 Anaphase-promoting complex subunit 4 WD40 domain 277 336 2.4E-5 T 23-04-2016 IPR024977 Anaphase-promoting complex subunit 4, WD40 domain RPE_RS23960 d5087291aaf42cd8498e7cdf527bb322 338 SUPERFAMILY SSF50998 25 332 5.1E-33 T 23-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily RPE_RS01150 878e530b0f5176e05f3dc52a6b492235 268 Pfam PF00005 ABC transporter 42 183 2.2E-27 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS01150 878e530b0f5176e05f3dc52a6b492235 268 SMART SM00382 50 232 5.8E-15 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS01150 878e530b0f5176e05f3dc52a6b492235 268 Gene3D G3DSA:3.40.50.300 20 247 1.0E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01150 878e530b0f5176e05f3dc52a6b492235 268 SUPERFAMILY SSF52540 25 248 4.14E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01150 878e530b0f5176e05f3dc52a6b492235 268 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS01150 878e530b0f5176e05f3dc52a6b492235 268 PANTHER PTHR24220 27 267 1.3E-74 T 23-04-2016 RPE_RS01150 878e530b0f5176e05f3dc52a6b492235 268 PANTHER PTHR24220:SF432 27 267 1.3E-74 T 23-04-2016 RPE_RS01560 689d2ca98a3a21ddb06d4acd8b143f64 200 PANTHER PTHR24220:SF508 4 196 1.9E-74 T 23-04-2016 RPE_RS01560 689d2ca98a3a21ddb06d4acd8b143f64 200 SUPERFAMILY SSF52540 7 184 4.5E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01560 689d2ca98a3a21ddb06d4acd8b143f64 200 ProSitePatterns PS00211 ABC transporters family signature. 127 141 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS01560 689d2ca98a3a21ddb06d4acd8b143f64 200 PANTHER PTHR24220 4 196 1.9E-74 T 23-04-2016 RPE_RS01560 689d2ca98a3a21ddb06d4acd8b143f64 200 SMART SM00382 27 200 4.2E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS01560 689d2ca98a3a21ddb06d4acd8b143f64 200 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 5 195 4.5E-70 T 23-04-2016 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004|GO:0030288 RPE_RS01560 689d2ca98a3a21ddb06d4acd8b143f64 200 Pfam PF00005 ABC transporter 21 155 1.5E-26 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS01560 689d2ca98a3a21ddb06d4acd8b143f64 200 Gene3D G3DSA:3.40.50.300 6 184 6.2E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01205 5c313b1afec336d1efb6635f83263e83 369 Pfam PF13515 Fusaric acid resistance protein-like 32 158 1.7E-14 T 23-04-2016 RPE_RS01205 5c313b1afec336d1efb6635f83263e83 369 PANTHER PTHR30509 22 277 1.3E-21 T 23-04-2016 RPE_RS01555 35dc6fa1c90d83d72abd50f0794ae2a0 905 Pfam PF00330 Aconitase family (aconitate hydratase) 72 569 1.9E-182 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01555 35dc6fa1c90d83d72abd50f0794ae2a0 905 ProSitePatterns PS00450 Aconitase family signature 1. 434 450 - T 23-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01555 35dc6fa1c90d83d72abd50f0794ae2a0 905 SUPERFAMILY SSF52016 638 902 2.35E-88 T 23-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RPE_RS01555 35dc6fa1c90d83d72abd50f0794ae2a0 905 Gene3D G3DSA:3.30.499.10 22 258 1.9E-79 T 23-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01555 35dc6fa1c90d83d72abd50f0794ae2a0 905 Gene3D G3DSA:3.40.1060.10 259 377 2.6E-35 T 23-04-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01555 35dc6fa1c90d83d72abd50f0794ae2a0 905 Gene3D G3DSA:3.20.19.10 645 903 3.8E-81 T 23-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RPE_RS01555 35dc6fa1c90d83d72abd50f0794ae2a0 905 PANTHER PTHR11670 763 905 0.0 T 23-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01555 35dc6fa1c90d83d72abd50f0794ae2a0 905 PANTHER PTHR11670 211 403 0.0 T 23-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01555 35dc6fa1c90d83d72abd50f0794ae2a0 905 PANTHER PTHR11670 674 719 0.0 T 23-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01555 35dc6fa1c90d83d72abd50f0794ae2a0 905 PANTHER PTHR11670 423 658 0.0 T 23-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01555 35dc6fa1c90d83d72abd50f0794ae2a0 905 PANTHER PTHR11670 1 189 0.0 T 23-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01555 35dc6fa1c90d83d72abd50f0794ae2a0 905 PANTHER PTHR11670:SF1 763 905 0.0 T 23-04-2016 RPE_RS01555 35dc6fa1c90d83d72abd50f0794ae2a0 905 PANTHER PTHR11670:SF1 211 403 0.0 T 23-04-2016 RPE_RS01555 35dc6fa1c90d83d72abd50f0794ae2a0 905 PANTHER PTHR11670:SF1 674 719 0.0 T 23-04-2016 RPE_RS01555 35dc6fa1c90d83d72abd50f0794ae2a0 905 PANTHER PTHR11670:SF1 423 658 0.0 T 23-04-2016 RPE_RS01555 35dc6fa1c90d83d72abd50f0794ae2a0 905 PANTHER PTHR11670:SF1 1 189 0.0 T 23-04-2016 RPE_RS01555 35dc6fa1c90d83d72abd50f0794ae2a0 905 SUPERFAMILY SSF53732 4 632 4.19E-221 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01555 35dc6fa1c90d83d72abd50f0794ae2a0 905 PRINTS PR00415 Aconitase family signature 171 179 2.6E-41 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01555 35dc6fa1c90d83d72abd50f0794ae2a0 905 PRINTS PR00415 Aconitase family signature 226 241 2.6E-41 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01555 35dc6fa1c90d83d72abd50f0794ae2a0 905 PRINTS PR00415 Aconitase family signature 288 301 2.6E-41 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01555 35dc6fa1c90d83d72abd50f0794ae2a0 905 PRINTS PR00415 Aconitase family signature 438 449 2.6E-41 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01555 35dc6fa1c90d83d72abd50f0794ae2a0 905 PRINTS PR00415 Aconitase family signature 382 396 2.6E-41 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01555 35dc6fa1c90d83d72abd50f0794ae2a0 905 PRINTS PR00415 Aconitase family signature 302 315 2.6E-41 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01555 35dc6fa1c90d83d72abd50f0794ae2a0 905 PRINTS PR00415 Aconitase family signature 212 225 2.6E-41 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01555 35dc6fa1c90d83d72abd50f0794ae2a0 905 PRINTS PR00415 Aconitase family signature 147 160 2.6E-41 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01555 35dc6fa1c90d83d72abd50f0794ae2a0 905 PRINTS PR00415 Aconitase family signature 500 513 2.6E-41 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01555 35dc6fa1c90d83d72abd50f0794ae2a0 905 Pfam PF00694 Aconitase C-terminal domain 699 831 1.4E-41 T 23-04-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01555 35dc6fa1c90d83d72abd50f0794ae2a0 905 ProSitePatterns PS01244 Aconitase family signature 2. 500 513 - T 23-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01555 35dc6fa1c90d83d72abd50f0794ae2a0 905 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 18 903 0.0 T 23-04-2016 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3 RPE_RS01555 35dc6fa1c90d83d72abd50f0794ae2a0 905 Gene3D G3DSA:3.30.499.10 379 582 5.0E-62 T 23-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS19955 7a006d6523f1b206e71b88ee888d341f 411 Pfam PF01734 Patatin-like phospholipase 82 265 1.9E-16 T 23-04-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 RPE_RS19955 7a006d6523f1b206e71b88ee888d341f 411 Gene3D G3DSA:3.40.1090.10 75 265 1.7E-15 T 23-04-2016 RPE_RS19955 7a006d6523f1b206e71b88ee888d341f 411 SUPERFAMILY SSF52151 77 297 5.49E-35 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RPE_RS20775 ab4a3ff2251ba0118137263fbea1e666 323 PANTHER PTHR33531 7 169 1.5E-64 T 23-04-2016 RPE_RS20775 ab4a3ff2251ba0118137263fbea1e666 323 PIRSF PIRSF035918 1 323 2.4E-164 T 23-04-2016 IPR017040 Uncharacterised conserved protein UCP035918 , rubrerythrin/DUF125-related RPE_RS20775 ab4a3ff2251ba0118137263fbea1e666 323 PANTHER PTHR33531:SF4 7 169 1.5E-64 T 23-04-2016 RPE_RS20775 ab4a3ff2251ba0118137263fbea1e666 323 Gene3D G3DSA:1.20.1260.10 7 148 3.4E-30 T 23-04-2016 IPR012347 Ferritin-related RPE_RS20775 ab4a3ff2251ba0118137263fbea1e666 323 Pfam PF02915 Rubrerythrin 11 147 3.8E-33 T 23-04-2016 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 RPE_RS20775 ab4a3ff2251ba0118137263fbea1e666 323 SUPERFAMILY SSF47240 4 153 1.38E-32 T 23-04-2016 IPR009078 Ferritin-like superfamily RPE_RS00425 7f23efacf7b244d791d398e444d9c154 296 Pfam PF01841 Transglutaminase-like superfamily 154 245 4.2E-15 T 23-04-2016 IPR002931 Transglutaminase-like RPE_RS00425 7f23efacf7b244d791d398e444d9c154 296 PANTHER PTHR33490 1 293 1.2E-61 T 23-04-2016 RPE_RS00425 7f23efacf7b244d791d398e444d9c154 296 PANTHER PTHR33490:SF6 1 293 1.2E-61 T 23-04-2016 RPE_RS00425 7f23efacf7b244d791d398e444d9c154 296 Gene3D G3DSA:3.90.260.10 159 253 5.6E-9 T 23-04-2016 IPR002931 Transglutaminase-like RPE_RS00425 7f23efacf7b244d791d398e444d9c154 296 SMART SM00460 176 247 2.2E-10 T 23-04-2016 IPR002931 Transglutaminase-like RPE_RS00425 7f23efacf7b244d791d398e444d9c154 296 SUPERFAMILY SSF54001 68 272 8.69E-36 T 23-04-2016 RPE_RS00425 7f23efacf7b244d791d398e444d9c154 296 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 3 82 2.4E-21 T 23-04-2016 IPR013589 Bacterial transglutaminase-like, N-terminal RPE_RS05570 55dcd5f61affe985295d38140a2b5ff8 320 Gene3D G3DSA:3.90.550.10 3 193 3.5E-20 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS05570 55dcd5f61affe985295d38140a2b5ff8 320 Pfam PF00535 Glycosyl transferase family 2 8 121 2.3E-11 T 23-04-2016 IPR001173 Glycosyltransferase 2-like RPE_RS05570 55dcd5f61affe985295d38140a2b5ff8 320 PANTHER PTHR22916 1 299 3.6E-18 T 23-04-2016 RPE_RS05570 55dcd5f61affe985295d38140a2b5ff8 320 SUPERFAMILY SSF53448 1 260 1.34E-36 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS11335 1a04a53404f6327257905f93b781b984 312 PANTHER PTHR22911 4 303 3.7E-103 T 23-04-2016 RPE_RS11335 1a04a53404f6327257905f93b781b984 312 SUPERFAMILY SSF103481 200 297 8.37E-14 T 23-04-2016 RPE_RS11335 1a04a53404f6327257905f93b781b984 312 Pfam PF00892 EamA-like transporter family 24 154 3.6E-16 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RPE_RS11335 1a04a53404f6327257905f93b781b984 312 Pfam PF00892 EamA-like transporter family 166 288 9.9E-10 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RPE_RS11335 1a04a53404f6327257905f93b781b984 312 PANTHER PTHR22911:SF70 4 303 3.7E-103 T 23-04-2016 RPE_RS11335 1a04a53404f6327257905f93b781b984 312 SUPERFAMILY SSF103481 57 158 5.49E-15 T 23-04-2016 RPE_RS18190 9b6600e68050ec7c40dacb34e69cac04 291 Pfam PF03705 CheR methyltransferase, all-alpha domain 18 68 2.8E-17 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RPE_RS18190 9b6600e68050ec7c40dacb34e69cac04 291 Gene3D G3DSA:1.10.155.10 10 81 4.7E-22 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RPE_RS18190 9b6600e68050ec7c40dacb34e69cac04 291 PRINTS PR00996 Glutamate methyltransferase family signature 76 88 4.4E-37 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS18190 9b6600e68050ec7c40dacb34e69cac04 291 PRINTS PR00996 Glutamate methyltransferase family signature 38 51 4.4E-37 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS18190 9b6600e68050ec7c40dacb34e69cac04 291 PRINTS PR00996 Glutamate methyltransferase family signature 116 136 4.4E-37 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS18190 9b6600e68050ec7c40dacb34e69cac04 291 PRINTS PR00996 Glutamate methyltransferase family signature 151 167 4.4E-37 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS18190 9b6600e68050ec7c40dacb34e69cac04 291 PRINTS PR00996 Glutamate methyltransferase family signature 221 235 4.4E-37 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS18190 9b6600e68050ec7c40dacb34e69cac04 291 PRINTS PR00996 Glutamate methyltransferase family signature 240 263 4.4E-37 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS18190 9b6600e68050ec7c40dacb34e69cac04 291 PIRSF PIRSF000410 1 285 7.2E-77 T 23-04-2016 IPR026024 Chemotaxis protein methyltransferase CheR RPE_RS18190 9b6600e68050ec7c40dacb34e69cac04 291 SMART SM00138 16 281 2.0E-77 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS18190 9b6600e68050ec7c40dacb34e69cac04 291 SUPERFAMILY SSF47757 10 82 2.62E-17 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RPE_RS18190 9b6600e68050ec7c40dacb34e69cac04 291 SUPERFAMILY SSF53335 83 272 1.67E-45 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS18190 9b6600e68050ec7c40dacb34e69cac04 291 Pfam PF01739 CheR methyltransferase, SAM binding domain 83 274 9.0E-57 T 23-04-2016 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal RPE_RS18190 9b6600e68050ec7c40dacb34e69cac04 291 Gene3D G3DSA:3.40.50.150 82 274 1.3E-61 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS18190 9b6600e68050ec7c40dacb34e69cac04 291 PANTHER PTHR24422 12 284 7.2E-73 T 23-04-2016 RPE_RS16165 c8291d1b0122f1c6d015af6e7b736ac8 131 PANTHER PTHR11803:SF16 4 131 1.9E-53 T 23-04-2016 RPE_RS16165 c8291d1b0122f1c6d015af6e7b736ac8 131 Pfam PF01042 Endoribonuclease L-PSP 15 128 2.7E-21 T 23-04-2016 IPR006175 YjgF/YER057c/UK114 family RPE_RS16165 c8291d1b0122f1c6d015af6e7b736ac8 131 SUPERFAMILY SSF55298 1 130 8.8E-32 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like RPE_RS16165 c8291d1b0122f1c6d015af6e7b736ac8 131 Gene3D G3DSA:3.30.1330.40 2 130 2.9E-36 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like RPE_RS16165 c8291d1b0122f1c6d015af6e7b736ac8 131 PANTHER PTHR11803 4 131 1.9E-53 T 23-04-2016 IPR006175 YjgF/YER057c/UK114 family RPE_RS12570 0855c44201b667c7995bf29eb8b6e2d6 499 PANTHER PTHR12592:SF0 1 497 5.5E-116 T 23-04-2016 RPE_RS12570 0855c44201b667c7995bf29eb8b6e2d6 499 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 228 488 3.3E-52 T 23-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 RPE_RS12570 0855c44201b667c7995bf29eb8b6e2d6 499 Pfam PF01256 Carbohydrate kinase 240 470 2.0E-50 T 23-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 RPE_RS12570 0855c44201b667c7995bf29eb8b6e2d6 499 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 216 493 17.706 T 23-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 RPE_RS12570 0855c44201b667c7995bf29eb8b6e2d6 499 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 8 201 1.9E-37 T 23-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 RPE_RS12570 0855c44201b667c7995bf29eb8b6e2d6 499 Pfam PF03853 YjeF-related protein N-terminus 25 180 9.3E-39 T 23-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 RPE_RS12570 0855c44201b667c7995bf29eb8b6e2d6 499 Gene3D G3DSA:3.40.50.10260 1 225 1.8E-62 T 23-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 RPE_RS12570 0855c44201b667c7995bf29eb8b6e2d6 499 SUPERFAMILY SSF53613 215 491 1.71E-62 T 23-04-2016 IPR029056 Ribokinase-like RPE_RS12570 0855c44201b667c7995bf29eb8b6e2d6 499 SUPERFAMILY SSF64153 1 238 4.45E-60 T 23-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 RPE_RS12570 0855c44201b667c7995bf29eb8b6e2d6 499 Gene3D G3DSA:3.40.1190.20 226 491 6.2E-79 T 23-04-2016 IPR029056 Ribokinase-like RPE_RS12570 0855c44201b667c7995bf29eb8b6e2d6 499 PANTHER PTHR12592 1 497 5.5E-116 T 23-04-2016 RPE_RS12570 0855c44201b667c7995bf29eb8b6e2d6 499 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 5 201 23.839 T 23-04-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 RPE_RS12570 0855c44201b667c7995bf29eb8b6e2d6 499 PIRSF PIRSF017184 1 494 2.9E-108 T 23-04-2016 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 RPE_RS12570 0855c44201b667c7995bf29eb8b6e2d6 499 ProSitePatterns PS01050 YjeF C-terminal domain signature 2. 433 443 - T 23-04-2016 IPR017953 Carbohydrate kinase, predicted, conserved site RPE_RS04570 d4beb88ea35e418536ed9f8ece99232f 219 SUPERFAMILY SSF103088 103 210 4.19E-25 T 23-04-2016 IPR006665 OmpA-like domain RPE_RS04570 d4beb88ea35e418536ed9f8ece99232f 219 PANTHER PTHR30128 59 219 1.1E-30 T 23-04-2016 RPE_RS04570 d4beb88ea35e418536ed9f8ece99232f 219 PRINTS PR01021 OMPA domain signature 142 157 4.9E-16 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RPE_RS04570 d4beb88ea35e418536ed9f8ece99232f 219 PRINTS PR01021 OMPA domain signature 157 173 4.9E-16 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RPE_RS04570 d4beb88ea35e418536ed9f8ece99232f 219 PRINTS PR01021 OMPA domain signature 110 132 4.9E-16 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RPE_RS04570 d4beb88ea35e418536ed9f8ece99232f 219 ProSitePatterns PS01068 OmpA-like domain. 144 189 - T 23-04-2016 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 RPE_RS04570 d4beb88ea35e418536ed9f8ece99232f 219 PANTHER PTHR30128:SF10 59 219 1.1E-30 T 23-04-2016 RPE_RS04570 d4beb88ea35e418536ed9f8ece99232f 219 Gene3D G3DSA:3.30.1330.60 101 210 6.7E-28 T 23-04-2016 IPR006665 OmpA-like domain RPE_RS04570 d4beb88ea35e418536ed9f8ece99232f 219 Pfam PF00691 OmpA family 109 201 2.4E-20 T 23-04-2016 IPR006665 OmpA-like domain RPE_RS20100 88032cb9e56a97a5034fe2de6fecfb7e 93 PIRSF PIRSF017854 9 93 3.2E-35 T 23-04-2016 IPR016704 Conjugal transfer, TrbD RPE_RS20100 88032cb9e56a97a5034fe2de6fecfb7e 93 Pfam PF05101 Type IV secretory pathway, VirB3-like protein 16 83 4.2E-13 T 23-04-2016 IPR007792 Type IV secretion system, VirB3 / TrbD / AvhB RPE_RS22410 0c02a5cef77698825d2dfaaa33c703f0 429 Gene3D G3DSA:3.65.10.10 21 231 3.2E-67 T 23-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 RPE_RS22410 0c02a5cef77698825d2dfaaa33c703f0 429 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 426 6.4E-166 T 23-04-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RPE_RS22410 0c02a5cef77698825d2dfaaa33c703f0 429 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 427 44.142 T 23-04-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RPE_RS22410 0c02a5cef77698825d2dfaaa33c703f0 429 Gene3D G3DSA:3.65.10.10 232 427 6.2E-59 T 23-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 RPE_RS22410 0c02a5cef77698825d2dfaaa33c703f0 429 SUPERFAMILY SSF55205 1 428 4.25E-133 T 23-04-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 RPE_RS22410 0c02a5cef77698825d2dfaaa33c703f0 429 PANTHER PTHR21090 1 429 3.1E-171 T 23-04-2016 RPE_RS22410 0c02a5cef77698825d2dfaaa33c703f0 429 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 8 417 2.7E-95 T 23-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 RPE_RS12335 26aec4eae78d013dcc1203d53302507e 666 Gene3D G3DSA:3.20.20.450 399 645 1.2E-73 T 23-04-2016 IPR001633 EAL domain RPE_RS12335 26aec4eae78d013dcc1203d53302507e 666 SUPERFAMILY SSF141868 400 644 1.02E-69 T 23-04-2016 IPR001633 EAL domain RPE_RS12335 26aec4eae78d013dcc1203d53302507e 666 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 221 381 8.1E-41 T 23-04-2016 IPR000160 GGDEF domain RPE_RS12335 26aec4eae78d013dcc1203d53302507e 666 Pfam PF00563 EAL domain 400 632 6.6E-60 T 23-04-2016 IPR001633 EAL domain RPE_RS12335 26aec4eae78d013dcc1203d53302507e 666 Pfam PF00990 Diguanylate cyclase, GGDEF domain 225 376 8.7E-42 T 23-04-2016 IPR000160 GGDEF domain RPE_RS12335 26aec4eae78d013dcc1203d53302507e 666 SMART SM00267 214 382 3.8E-52 T 23-04-2016 IPR000160 GGDEF domain RPE_RS12335 26aec4eae78d013dcc1203d53302507e 666 SUPERFAMILY SSF55073 230 383 2.67E-44 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS12335 26aec4eae78d013dcc1203d53302507e 666 PANTHER PTHR33121 29 43 9.7E-57 T 23-04-2016 RPE_RS12335 26aec4eae78d013dcc1203d53302507e 666 PANTHER PTHR33121 342 666 9.7E-57 T 23-04-2016 RPE_RS12335 26aec4eae78d013dcc1203d53302507e 666 PANTHER PTHR33121:SF13 29 43 9.7E-57 T 23-04-2016 RPE_RS12335 26aec4eae78d013dcc1203d53302507e 666 PANTHER PTHR33121:SF13 342 666 9.7E-57 T 23-04-2016 RPE_RS12335 26aec4eae78d013dcc1203d53302507e 666 SMART SM00052 384 637 7.2E-74 T 23-04-2016 IPR001633 EAL domain RPE_RS12335 26aec4eae78d013dcc1203d53302507e 666 Gene3D G3DSA:3.30.70.270 226 389 6.7E-52 T 23-04-2016 RPE_RS10455 20e636340861e3b9a39c81961015bace 351 Gene3D G3DSA:3.90.180.10 2 177 4.9E-61 T 23-04-2016 IPR011032 GroES-like RPE_RS10455 20e636340861e3b9a39c81961015bace 351 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 179 207 - T 23-04-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 RPE_RS10455 20e636340861e3b9a39c81961015bace 351 SUPERFAMILY SSF50129 5 174 5.63E-51 T 23-04-2016 IPR011032 GroES-like RPE_RS10455 20e636340861e3b9a39c81961015bace 351 Gene3D G3DSA:3.40.50.720 178 292 2.4E-22 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS10455 20e636340861e3b9a39c81961015bace 351 PANTHER PTHR11695 16 351 2.2E-151 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RPE_RS10455 20e636340861e3b9a39c81961015bace 351 PANTHER PTHR11695:SF608 16 351 2.2E-151 T 23-04-2016 RPE_RS10455 20e636340861e3b9a39c81961015bace 351 Pfam PF00107 Zinc-binding dehydrogenase 186 308 9.7E-21 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RPE_RS10455 20e636340861e3b9a39c81961015bace 351 SMART SM00829 11 342 4.5E-4 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RPE_RS10455 20e636340861e3b9a39c81961015bace 351 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 23-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 RPE_RS10455 20e636340861e3b9a39c81961015bace 351 SUPERFAMILY SSF51735 149 312 1.03E-40 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS10455 20e636340861e3b9a39c81961015bace 351 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 145 1.0E-24 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RPE_RS19200 c793df471426747586cb33a758b67b1a 198 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 85 3.3E-31 T 23-04-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RPE_RS19200 c793df471426747586cb33a758b67b1a 198 PRINTS PR01703 Manganese superoxide dismutase signature 158 170 3.3E-24 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RPE_RS19200 c793df471426747586cb33a758b67b1a 198 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 3.3E-24 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RPE_RS19200 c793df471426747586cb33a758b67b1a 198 PRINTS PR01703 Manganese superoxide dismutase signature 68 81 3.3E-24 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RPE_RS19200 c793df471426747586cb33a758b67b1a 198 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 3.3E-24 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RPE_RS19200 c793df471426747586cb33a758b67b1a 198 PRINTS PR01703 Manganese superoxide dismutase signature 122 130 3.3E-24 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RPE_RS19200 c793df471426747586cb33a758b67b1a 198 PANTHER PTHR11404 1 198 4.4E-110 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RPE_RS19200 c793df471426747586cb33a758b67b1a 198 PIRSF PIRSF000349 1 198 6.6E-79 T 23-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RPE_RS19200 c793df471426747586cb33a758b67b1a 198 SUPERFAMILY SSF54719 88 197 9.04E-42 T 23-04-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RPE_RS19200 c793df471426747586cb33a758b67b1a 198 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 95 193 4.8E-35 T 23-04-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RPE_RS19200 c793df471426747586cb33a758b67b1a 198 PANTHER PTHR11404:SF8 1 198 4.4E-110 T 23-04-2016 RPE_RS19200 c793df471426747586cb33a758b67b1a 198 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 160 167 - T 23-04-2016 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RPE_RS19200 c793df471426747586cb33a758b67b1a 198 SUPERFAMILY SSF46609 1 86 1.44E-34 T 23-04-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RPE_RS19200 c793df471426747586cb33a758b67b1a 198 Gene3D G3DSA:1.10.287.990 20 85 1.4E-23 T 23-04-2016 RPE_RS21085 c03385a0e504c330ce00a4de36d876eb 276 PANTHER PTHR40082 1 276 4.5E-52 T 23-04-2016 RPE_RS21085 c03385a0e504c330ce00a4de36d876eb 276 Gene3D G3DSA:3.40.50.10090 4 134 1.3E-23 T 23-04-2016 RPE_RS21085 c03385a0e504c330ce00a4de36d876eb 276 Gene3D G3DSA:3.40.50.10090 135 273 7.0E-25 T 23-04-2016 RPE_RS21085 c03385a0e504c330ce00a4de36d876eb 276 SUPERFAMILY SSF69618 7 272 4.19E-52 T 23-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS21085 c03385a0e504c330ce00a4de36d876eb 276 Pfam PF02602 Uroporphyrinogen-III synthase HemD 20 253 2.6E-34 T 23-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS00735 89e40f997c36b873c715483fe8a867e0 947 SUPERFAMILY SSF52540 356 403 3.66E-82 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS00735 89e40f997c36b873c715483fe8a867e0 947 SUPERFAMILY SSF52540 7 228 3.66E-82 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS00735 89e40f997c36b873c715483fe8a867e0 947 Pfam PF01043 SecA preprotein cross-linking domain 232 346 5.0E-41 T 23-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 RPE_RS00735 89e40f997c36b873c715483fe8a867e0 947 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 461 8.1E-203 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RPE_RS00735 89e40f997c36b873c715483fe8a867e0 947 SUPERFAMILY SSF81767 227 356 1.83E-45 T 23-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 RPE_RS00735 89e40f997c36b873c715483fe8a867e0 947 PRINTS PR00906 SecA protein signature 364 381 3.5E-68 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RPE_RS00735 89e40f997c36b873c715483fe8a867e0 947 PRINTS PR00906 SecA protein signature 63 87 3.5E-68 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RPE_RS00735 89e40f997c36b873c715483fe8a867e0 947 PRINTS PR00906 SecA protein signature 327 349 3.5E-68 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RPE_RS00735 89e40f997c36b873c715483fe8a867e0 947 PRINTS PR00906 SecA protein signature 117 127 3.5E-68 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RPE_RS00735 89e40f997c36b873c715483fe8a867e0 947 PRINTS PR00906 SecA protein signature 401 414 3.5E-68 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RPE_RS00735 89e40f997c36b873c715483fe8a867e0 947 PRINTS PR00906 SecA protein signature 101 115 3.5E-68 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RPE_RS00735 89e40f997c36b873c715483fe8a867e0 947 PRINTS PR00906 SecA protein signature 170 190 3.5E-68 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RPE_RS00735 89e40f997c36b873c715483fe8a867e0 947 Pfam PF07516 SecA Wing and Scaffold domain 658 868 3.7E-61 T 23-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 RPE_RS00735 89e40f997c36b873c715483fe8a867e0 947 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 871 20.186 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RPE_RS00735 89e40f997c36b873c715483fe8a867e0 947 SUPERFAMILY SSF52540 405 658 8.41E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS00735 89e40f997c36b873c715483fe8a867e0 947 SUPERFAMILY SSF81886 923 935 6.02E-77 T 23-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 RPE_RS00735 89e40f997c36b873c715483fe8a867e0 947 SUPERFAMILY SSF81886 660 879 6.02E-77 T 23-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 RPE_RS00735 89e40f997c36b873c715483fe8a867e0 947 SMART SM00958 228 346 3.9E-71 T 23-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 RPE_RS00735 89e40f997c36b873c715483fe8a867e0 947 Pfam PF07517 SecA DEAD-like domain 7 389 2.8E-131 T 23-04-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 RPE_RS00735 89e40f997c36b873c715483fe8a867e0 947 Pfam PF02810 SEC-C motif 927 945 3.2E-8 T 23-04-2016 IPR004027 SEC-C motif RPE_RS00735 89e40f997c36b873c715483fe8a867e0 947 Gene3D G3DSA:1.10.3060.10 688 870 3.1E-51 T 23-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 RPE_RS00735 89e40f997c36b873c715483fe8a867e0 947 Gene3D G3DSA:3.90.1440.10 231 356 2.1E-48 T 23-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 RPE_RS00735 89e40f997c36b873c715483fe8a867e0 947 ProSitePatterns PS01312 SecA family signature. 513 528 - T 23-04-2016 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 RPE_RS00735 89e40f997c36b873c715483fe8a867e0 947 Gene3D G3DSA:3.40.50.300 405 658 5.0E-79 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS00735 89e40f997c36b873c715483fe8a867e0 947 PANTHER PTHR30612 1 457 0.0 T 23-04-2016 RPE_RS00735 89e40f997c36b873c715483fe8a867e0 947 PANTHER PTHR30612 590 947 0.0 T 23-04-2016 RPE_RS00735 89e40f997c36b873c715483fe8a867e0 947 PANTHER PTHR30612 480 533 0.0 T 23-04-2016 RPE_RS00735 89e40f997c36b873c715483fe8a867e0 947 SMART SM00957 6 390 1.2E-296 T 23-04-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 RPE_RS00735 89e40f997c36b873c715483fe8a867e0 947 Gene3D G3DSA:3.40.50.300 357 404 2.2E-125 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS00735 89e40f997c36b873c715483fe8a867e0 947 Gene3D G3DSA:3.40.50.300 5 228 2.2E-125 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15895 14522fddb308ba20a1f910fa4bdbb8da 215 PANTHER PTHR21631 1 203 4.4E-79 T 23-04-2016 RPE_RS15895 14522fddb308ba20a1f910fa4bdbb8da 215 PANTHER PTHR21631:SF4 1 203 4.4E-79 T 23-04-2016 RPE_RS15895 14522fddb308ba20a1f910fa4bdbb8da 215 Pfam PF13714 Phosphoenolpyruvate phosphomutase 1 165 2.3E-29 T 23-04-2016 RPE_RS15895 14522fddb308ba20a1f910fa4bdbb8da 215 Gene3D G3DSA:3.20.20.60 1 201 2.3E-63 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RPE_RS15895 14522fddb308ba20a1f910fa4bdbb8da 215 SUPERFAMILY SSF51621 1 204 5.02E-64 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RPE_RS10555 a1e73dd66e47740cf60a24184793d987 480 Pfam PF02875 Mur ligase family, glutamate ligase domain 328 407 2.5E-12 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RPE_RS10555 a1e73dd66e47740cf60a24184793d987 480 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 33 465 2.6E-115 T 23-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RPE_RS10555 a1e73dd66e47740cf60a24184793d987 480 Pfam PF08245 Mur ligase middle domain 113 303 2.9E-45 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RPE_RS10555 a1e73dd66e47740cf60a24184793d987 480 SUPERFAMILY SSF53244 329 465 5.31E-33 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RPE_RS10555 a1e73dd66e47740cf60a24184793d987 480 Gene3D G3DSA:3.40.1390.10 18 96 5.2E-20 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RPE_RS10555 a1e73dd66e47740cf60a24184793d987 480 PANTHER PTHR23135:SF3 14 466 4.0E-123 T 23-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RPE_RS10555 a1e73dd66e47740cf60a24184793d987 480 SUPERFAMILY SSF53623 109 319 3.92E-49 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RPE_RS10555 a1e73dd66e47740cf60a24184793d987 480 Gene3D G3DSA:3.40.1190.10 97 319 4.7E-63 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RPE_RS10555 a1e73dd66e47740cf60a24184793d987 480 Gene3D G3DSA:3.90.190.20 328 467 6.3E-39 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RPE_RS10555 a1e73dd66e47740cf60a24184793d987 480 SUPERFAMILY SSF63418 7 104 3.79E-20 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RPE_RS10555 a1e73dd66e47740cf60a24184793d987 480 PANTHER PTHR23135 14 466 4.0E-123 T 23-04-2016 RPE_RS10555 a1e73dd66e47740cf60a24184793d987 480 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 7 466 31.292 T 23-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RPE_RS10555 a1e73dd66e47740cf60a24184793d987 480 Pfam PF01225 Mur ligase family, catalytic domain 30 102 9.7E-12 T 23-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RPE_RS17270 fb25ae6e6fccff8c9a6f38892e26d617 389 SUPERFAMILY SSF55073 234 388 4.87E-39 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS17270 fb25ae6e6fccff8c9a6f38892e26d617 389 PANTHER PTHR10799 95 223 3.0E-26 T 23-04-2016 RPE_RS17270 fb25ae6e6fccff8c9a6f38892e26d617 389 PANTHER PTHR10799:SF750 95 223 3.0E-26 T 23-04-2016 RPE_RS17270 fb25ae6e6fccff8c9a6f38892e26d617 389 PANTHER PTHR10799 261 388 3.0E-26 T 23-04-2016 RPE_RS17270 fb25ae6e6fccff8c9a6f38892e26d617 389 Pfam PF00990 Diguanylate cyclase, GGDEF domain 230 386 6.4E-39 T 23-04-2016 IPR000160 GGDEF domain RPE_RS17270 fb25ae6e6fccff8c9a6f38892e26d617 389 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 227 388 4.4E-43 T 23-04-2016 IPR000160 GGDEF domain RPE_RS17270 fb25ae6e6fccff8c9a6f38892e26d617 389 PANTHER PTHR10799:SF750 261 388 3.0E-26 T 23-04-2016 RPE_RS17270 fb25ae6e6fccff8c9a6f38892e26d617 389 SMART SM00267 218 389 1.2E-49 T 23-04-2016 IPR000160 GGDEF domain RPE_RS17270 fb25ae6e6fccff8c9a6f38892e26d617 389 Gene3D G3DSA:3.30.70.270 230 388 5.9E-44 T 23-04-2016 RPE_RS18975 c76b8ad7feb2527d3277c05955997356 171 SMART SM00347 56 156 7.1E-21 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RPE_RS18975 c76b8ad7feb2527d3277c05955997356 171 Pfam PF01047 MarR family 63 120 3.3E-15 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RPE_RS18975 c76b8ad7feb2527d3277c05955997356 171 SUPERFAMILY SSF46785 31 169 9.97E-29 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS18975 c76b8ad7feb2527d3277c05955997356 171 Gene3D G3DSA:1.10.10.10 33 169 5.5E-31 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS18975 c76b8ad7feb2527d3277c05955997356 171 PRINTS PR00598 Bacterial regulatory protein MarR family signature 80 96 7.5E-8 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RPE_RS18975 c76b8ad7feb2527d3277c05955997356 171 PRINTS PR00598 Bacterial regulatory protein MarR family signature 97 112 7.5E-8 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RPE_RS18975 c76b8ad7feb2527d3277c05955997356 171 PRINTS PR00598 Bacterial regulatory protein MarR family signature 116 132 7.5E-8 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RPE_RS18975 c76b8ad7feb2527d3277c05955997356 171 PANTHER PTHR33164 8 171 2.8E-21 T 23-04-2016 RPE_RS01670 a14e0ae4cdad5d2b95ad57d3560fae8f 631 SUPERFAMILY SSF52540 21 249 6.0E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01670 a14e0ae4cdad5d2b95ad57d3560fae8f 631 PANTHER PTHR11055 439 631 1.7E-103 T 23-04-2016 RPE_RS01670 a14e0ae4cdad5d2b95ad57d3560fae8f 631 Pfam PF00009 Elongation factor Tu GTP binding domain 24 187 6.0E-37 T 23-04-2016 RPE_RS01670 a14e0ae4cdad5d2b95ad57d3560fae8f 631 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 80 95 - T 23-04-2016 IPR031157 Tr-type G domain, conserved site RPE_RS01670 a14e0ae4cdad5d2b95ad57d3560fae8f 631 SUPERFAMILY SSF50465 328 429 9.11E-28 T 23-04-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RPE_RS01670 a14e0ae4cdad5d2b95ad57d3560fae8f 631 Gene3D G3DSA:2.40.30.10 343 429 8.5E-6 T 23-04-2016 RPE_RS01670 a14e0ae4cdad5d2b95ad57d3560fae8f 631 PRINTS PR00315 GTP-binding elongation factor signature 26 39 1.1E-12 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS01670 a14e0ae4cdad5d2b95ad57d3560fae8f 631 PRINTS PR00315 GTP-binding elongation factor signature 160 169 1.1E-12 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS01670 a14e0ae4cdad5d2b95ad57d3560fae8f 631 PRINTS PR00315 GTP-binding elongation factor signature 87 95 1.1E-12 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS01670 a14e0ae4cdad5d2b95ad57d3560fae8f 631 PRINTS PR00315 GTP-binding elongation factor signature 123 134 1.1E-12 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS01670 a14e0ae4cdad5d2b95ad57d3560fae8f 631 PRINTS PR00315 GTP-binding elongation factor signature 107 117 1.1E-12 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS01670 a14e0ae4cdad5d2b95ad57d3560fae8f 631 SUPERFAMILY SSF50447 240 322 2.5E-21 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain RPE_RS01670 a14e0ae4cdad5d2b95ad57d3560fae8f 631 Gene3D G3DSA:2.40.30.10 240 342 1.5E-19 T 23-04-2016 RPE_RS01670 a14e0ae4cdad5d2b95ad57d3560fae8f 631 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 25 429 1.5E-177 T 23-04-2016 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 RPE_RS01670 a14e0ae4cdad5d2b95ad57d3560fae8f 631 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 441 625 2.5E-70 T 23-04-2016 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: REACT_13433|UniPathway: UPA00140 RPE_RS01670 a14e0ae4cdad5d2b95ad57d3560fae8f 631 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 457 629 37.737 T 23-04-2016 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: REACT_13433|UniPathway: UPA00140 RPE_RS01670 a14e0ae4cdad5d2b95ad57d3560fae8f 631 Pfam PF01583 Adenylylsulphate kinase 458 611 1.2E-65 T 23-04-2016 RPE_RS01670 a14e0ae4cdad5d2b95ad57d3560fae8f 631 Gene3D G3DSA:3.40.50.300 19 228 1.7E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01670 a14e0ae4cdad5d2b95ad57d3560fae8f 631 Hamap MF_00062 Sulfate adenylyltransferase subunit 1 [cysN]. 16 458 47.416 T 23-04-2016 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 RPE_RS01670 a14e0ae4cdad5d2b95ad57d3560fae8f 631 Gene3D G3DSA:3.40.50.300 437 631 1.9E-82 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01670 a14e0ae4cdad5d2b95ad57d3560fae8f 631 SUPERFAMILY SSF52540 455 627 6.49E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15955 2be9779b1343b236d169200a673b5a96 366 Gene3D G3DSA:3.30.70.260 262 365 1.1E-27 T 23-04-2016 RPE_RS15955 2be9779b1343b236d169200a673b5a96 366 Pfam PF00005 ABC transporter 45 193 9.7E-32 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS15955 2be9779b1343b236d169200a673b5a96 366 SUPERFAMILY SSF55021 280 365 3.32E-20 T 23-04-2016 RPE_RS15955 2be9779b1343b236d169200a673b5a96 366 SMART SM00382 54 242 4.7E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS15955 2be9779b1343b236d169200a673b5a96 366 SMART SM00930 287 362 5.9E-25 T 23-04-2016 IPR018449 NIL domain RPE_RS15955 2be9779b1343b236d169200a673b5a96 366 PANTHER PTHR24220 25 349 1.4E-139 T 23-04-2016 RPE_RS15955 2be9779b1343b236d169200a673b5a96 366 ProSitePatterns PS00211 ABC transporters family signature. 165 179 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS15955 2be9779b1343b236d169200a673b5a96 366 Gene3D G3DSA:3.40.50.300 24 261 3.8E-83 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15955 2be9779b1343b236d169200a673b5a96 366 PANTHER PTHR24220:SF455 25 349 1.4E-139 T 23-04-2016 IPR026253 Methionine import ATP-binding protein MetN GO:0005524|GO:0015821|GO:0042626 RPE_RS15955 2be9779b1343b236d169200a673b5a96 366 SUPERFAMILY SSF52540 24 264 2.79E-81 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15955 2be9779b1343b236d169200a673b5a96 366 Pfam PF09383 NIL domain 290 360 7.1E-21 T 23-04-2016 IPR018449 NIL domain RPE_RS06370 cad763d47392195de031e95251a53014 586 Gene3D G3DSA:3.30.413.10 438 578 4.8E-30 T 23-04-2016 RPE_RS06370 cad763d47392195de031e95251a53014 586 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 361 427 4.6E-20 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RPE_RS06370 cad763d47392195de031e95251a53014 586 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 109 168 5.7E-15 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RPE_RS06370 cad763d47392195de031e95251a53014 586 SUPERFAMILY SSF55124 59 185 2.13E-24 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RPE_RS06370 cad763d47392195de031e95251a53014 586 PANTHER PTHR32439:SF0 1 585 7.5E-213 T 23-04-2016 RPE_RS06370 cad763d47392195de031e95251a53014 586 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 179 337 1.3E-28 T 23-04-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RPE_RS06370 cad763d47392195de031e95251a53014 586 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 443 554 1.8E-8 T 23-04-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RPE_RS06370 cad763d47392195de031e95251a53014 586 SUPERFAMILY SSF56014 439 577 7.2E-31 T 23-04-2016 RPE_RS06370 cad763d47392195de031e95251a53014 586 Gene3D G3DSA:3.30.413.10 179 340 4.1E-35 T 23-04-2016 RPE_RS06370 cad763d47392195de031e95251a53014 586 PRINTS PR00397 Sirohaem Fe-binding site signature 483 501 3.4E-6 T 23-04-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RPE_RS06370 cad763d47392195de031e95251a53014 586 PRINTS PR00397 Sirohaem Fe-binding site signature 439 457 3.4E-6 T 23-04-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RPE_RS06370 cad763d47392195de031e95251a53014 586 TIGRFAM TIGR02435 CobG: precorrin-3B synthase 85 505 9.9E-134 T 23-04-2016 IPR012798 Cobalamin (vitamin B12) biosynthesis CobG-like RPE_RS06370 cad763d47392195de031e95251a53014 586 SUPERFAMILY SSF55124 315 450 7.66E-25 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RPE_RS06370 cad763d47392195de031e95251a53014 586 Gene3D G3DSA:3.90.480.10 108 176 1.8E-38 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RPE_RS06370 cad763d47392195de031e95251a53014 586 Gene3D G3DSA:3.90.480.10 354 432 1.8E-38 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RPE_RS06370 cad763d47392195de031e95251a53014 586 PANTHER PTHR32439 1 585 7.5E-213 T 23-04-2016 RPE_RS06370 cad763d47392195de031e95251a53014 586 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 483 499 - T 23-04-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RPE_RS06370 cad763d47392195de031e95251a53014 586 SUPERFAMILY SSF56014 180 342 5.89E-38 T 23-04-2016 RPE_RS18385 5979bb0cd49bbf0babf011352ce5f346 183 Pfam PF10634 Fe2+ transport protein 22 176 2.3E-67 T 23-04-2016 IPR018470 Periplasmic metal-binding protein Tp34-type RPE_RS18385 5979bb0cd49bbf0babf011352ce5f346 183 PIRSF PIRSF017018 1 183 3.8E-76 T 23-04-2016 IPR018470 Periplasmic metal-binding protein Tp34-type RPE_RS23795 72169e7a91894d3065e798a6c0413617 153 PANTHER PTHR31793 9 145 2.4E-40 T 23-04-2016 RPE_RS23795 72169e7a91894d3065e798a6c0413617 153 ProSitePatterns PS01328 4-hydroxybenzoyl-CoA thioesterase family active site. 19 36 - T 23-04-2016 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site GO:0016787 RPE_RS23795 72169e7a91894d3065e798a6c0413617 153 PIRSF PIRSF003230 6 148 1.4E-40 T 23-04-2016 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 RPE_RS23795 72169e7a91894d3065e798a6c0413617 153 SUPERFAMILY SSF54637 12 142 6.6E-38 T 23-04-2016 IPR029069 HotDog domain RPE_RS23795 72169e7a91894d3065e798a6c0413617 153 Pfam PF03061 Thioesterase superfamily 29 118 1.1E-18 T 23-04-2016 IPR006683 Thioesterase domain RPE_RS23795 72169e7a91894d3065e798a6c0413617 153 Gene3D G3DSA:3.10.129.10 10 143 2.3E-46 T 23-04-2016 IPR029069 HotDog domain RPE_RS23795 72169e7a91894d3065e798a6c0413617 153 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 14 140 4.2E-47 T 23-04-2016 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 KEGG: 00360+3.1.2.-|KEGG: 00362+3.1.2.-|KEGG: 00592+3.1.2.-|KEGG: 00903+3.1.2.- RPE_RS23795 72169e7a91894d3065e798a6c0413617 153 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 18 128 1.8E-28 T 23-04-2016 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 RPE_RS23795 72169e7a91894d3065e798a6c0413617 153 PANTHER PTHR31793:SF9 9 145 2.4E-40 T 23-04-2016 RPE_RS14210 c789aa7c01641be02ebc0e776a0e14a1 268 Pfam PF06738 Putative threonine/serine exporter 25 260 3.4E-53 T 23-04-2016 IPR010619 Putative threonine/serine exporter RPE_RS14210 c789aa7c01641be02ebc0e776a0e14a1 268 PANTHER PTHR34390:SF2 14 260 1.1E-22 T 23-04-2016 RPE_RS14210 c789aa7c01641be02ebc0e776a0e14a1 268 PANTHER PTHR34390 14 260 1.1E-22 T 23-04-2016 RPE_RS16170 66af793f67e14d0f1cc95fc9eec0185d 554 SUPERFAMILY SSF56801 38 553 1.44E-132 T 23-04-2016 RPE_RS16170 66af793f67e14d0f1cc95fc9eec0185d 554 Gene3D G3DSA:3.40.50.980 218 375 4.5E-33 T 23-04-2016 RPE_RS16170 66af793f67e14d0f1cc95fc9eec0185d 554 ProSitePatterns PS00455 Putative AMP-binding domain signature. 213 224 - T 23-04-2016 IPR020845 AMP-binding, conserved site RPE_RS16170 66af793f67e14d0f1cc95fc9eec0185d 554 PANTHER PTHR24095 48 554 4.6E-144 T 23-04-2016 RPE_RS16170 66af793f67e14d0f1cc95fc9eec0185d 554 Gene3D G3DSA:2.30.38.10 378 449 2.4E-14 T 23-04-2016 RPE_RS16170 66af793f67e14d0f1cc95fc9eec0185d 554 Pfam PF00501 AMP-binding enzyme 65 455 7.8E-80 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS16170 66af793f67e14d0f1cc95fc9eec0185d 554 Gene3D G3DSA:3.40.50.980 64 217 2.9E-34 T 23-04-2016 RPE_RS16170 66af793f67e14d0f1cc95fc9eec0185d 554 Gene3D G3DSA:3.30.300.30 450 552 2.6E-28 T 23-04-2016 RPE_RS16170 66af793f67e14d0f1cc95fc9eec0185d 554 Pfam PF13193 AMP-binding enzyme C-terminal domain 464 542 7.5E-21 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RPE_RS11300 431461f83e36facab3b75ff247178008 288 Pfam PF05853 beta-keto acid cleavage enzyme 4 286 5.0E-86 T 23-04-2016 IPR008567 3-keto-5-aminohexanoate cleavage enzyme GO:0016740|GO:0019475 KEGG: 00600+2.3.1.24|UniPathway: UPA00870 RPE_RS11300 431461f83e36facab3b75ff247178008 288 PANTHER PTHR37418:SF2 2 288 8.6E-129 T 23-04-2016 RPE_RS11300 431461f83e36facab3b75ff247178008 288 PANTHER PTHR37418 2 288 8.6E-129 T 23-04-2016 RPE_RS11300 431461f83e36facab3b75ff247178008 288 Gene3D G3DSA:3.20.20.70 1 286 5.1E-96 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS12805 4e26e88e050487494bb9c7b9a82d04c0 330 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 8 19 - T 23-04-2016 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 RPE_RS12805 4e26e88e050487494bb9c7b9a82d04c0 330 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 7 227 1.2E-98 T 23-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 RPE_RS12805 4e26e88e050487494bb9c7b9a82d04c0 330 Gene3D G3DSA:3.40.50.10490 25 101 2.1E-63 T 23-04-2016 RPE_RS12805 4e26e88e050487494bb9c7b9a82d04c0 330 Gene3D G3DSA:3.40.50.10490 160 241 2.1E-63 T 23-04-2016 RPE_RS12805 4e26e88e050487494bb9c7b9a82d04c0 330 Pfam PF00318 Ribosomal protein S2 11 226 1.5E-93 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS12805 4e26e88e050487494bb9c7b9a82d04c0 330 PRINTS PR00395 Ribosomal protein S2 signature 8 26 1.2E-34 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS12805 4e26e88e050487494bb9c7b9a82d04c0 330 PRINTS PR00395 Ribosomal protein S2 signature 39 48 1.2E-34 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS12805 4e26e88e050487494bb9c7b9a82d04c0 330 PRINTS PR00395 Ribosomal protein S2 signature 160 177 1.2E-34 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS12805 4e26e88e050487494bb9c7b9a82d04c0 330 PRINTS PR00395 Ribosomal protein S2 signature 89 106 1.2E-34 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS12805 4e26e88e050487494bb9c7b9a82d04c0 330 PRINTS PR00395 Ribosomal protein S2 signature 177 188 1.2E-34 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS12805 4e26e88e050487494bb9c7b9a82d04c0 330 PRINTS PR00395 Ribosomal protein S2 signature 198 212 1.2E-34 T 23-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS12805 4e26e88e050487494bb9c7b9a82d04c0 330 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 4 227 40.992 T 23-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 RPE_RS12805 4e26e88e050487494bb9c7b9a82d04c0 330 PANTHER PTHR12534 6 271 5.9E-117 T 23-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 RPE_RS12805 4e26e88e050487494bb9c7b9a82d04c0 330 SUPERFAMILY SSF52313 8 232 3.53E-92 T 23-04-2016 IPR023591 Ribosomal protein S2, flavodoxin-like domain RPE_RS12805 4e26e88e050487494bb9c7b9a82d04c0 330 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 160 184 - T 23-04-2016 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 RPE_RS12805 4e26e88e050487494bb9c7b9a82d04c0 330 Gene3D G3DSA:1.10.287.610 102 154 1.2E-22 T 23-04-2016 RPE_RS12575 1fa7f83b68ac8987528b4eecacb8fe8e 436 Pfam PF07731 Multicopper oxidase 336 417 9.4E-12 T 23-04-2016 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 RPE_RS12575 1fa7f83b68ac8987528b4eecacb8fe8e 436 Gene3D G3DSA:2.60.40.420 187 306 1.2E-13 T 23-04-2016 IPR008972 Cupredoxin RPE_RS12575 1fa7f83b68ac8987528b4eecacb8fe8e 436 Gene3D G3DSA:2.60.40.420 342 419 6.0E-15 T 23-04-2016 IPR008972 Cupredoxin RPE_RS12575 1fa7f83b68ac8987528b4eecacb8fe8e 436 SUPERFAMILY SSF49503 343 418 7.06E-16 T 23-04-2016 IPR008972 Cupredoxin RPE_RS12575 1fa7f83b68ac8987528b4eecacb8fe8e 436 PANTHER PTHR11709:SF33 147 417 2.8E-24 T 23-04-2016 RPE_RS12575 1fa7f83b68ac8987528b4eecacb8fe8e 436 Pfam PF00394 Multicopper oxidase 196 267 6.2E-9 T 23-04-2016 IPR001117 Multicopper oxidase, type 1 GO:0016491|GO:0055114 RPE_RS12575 1fa7f83b68ac8987528b4eecacb8fe8e 436 SUPERFAMILY SSF49503 155 308 1.3E-12 T 23-04-2016 IPR008972 Cupredoxin RPE_RS12575 1fa7f83b68ac8987528b4eecacb8fe8e 436 PANTHER PTHR11709 147 417 2.8E-24 T 23-04-2016 RPE_RS18640 3140666efd80beea003bf5591a457c54 291 TIGRFAM TIGR02772 Ku_bact: Ku protein 5 259 9.4E-99 T 23-04-2016 IPR009187 Non-homologous end joining protein Ku, prokaryotic type RPE_RS18640 3140666efd80beea003bf5591a457c54 291 Gene3D G3DSA:2.40.290.10 5 153 8.5E-15 T 23-04-2016 IPR016194 SPOC-like, C-terminal domain RPE_RS18640 3140666efd80beea003bf5591a457c54 291 PANTHER PTHR41251 5 288 1.4E-51 T 23-04-2016 RPE_RS18640 3140666efd80beea003bf5591a457c54 291 Hamap MF_01875 Non-homologous end joining protein Ku [ku]. 4 258 31.64 T 23-04-2016 IPR009187 Non-homologous end joining protein Ku, prokaryotic type RPE_RS18640 3140666efd80beea003bf5591a457c54 291 Pfam PF02735 Ku70/Ku80 beta-barrel domain 15 195 4.5E-35 T 23-04-2016 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: REACT_216|Reactome: REACT_6185 RPE_RS18640 3140666efd80beea003bf5591a457c54 291 SUPERFAMILY SSF100939 4 262 1.26E-53 T 23-04-2016 IPR016194 SPOC-like, C-terminal domain RPE_RS18640 3140666efd80beea003bf5591a457c54 291 PANTHER PTHR41251:SF1 5 288 1.4E-51 T 23-04-2016 RPE_RS18640 3140666efd80beea003bf5591a457c54 291 SMART SM00559 56 186 2.0E-20 T 23-04-2016 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: REACT_216|Reactome: REACT_6185 RPE_RS18640 3140666efd80beea003bf5591a457c54 291 PIRSF PIRSF006493 2 291 2.1E-98 T 23-04-2016 IPR009187 Non-homologous end joining protein Ku, prokaryotic type RPE_RS10865 db2b2bea04efc713b533ba393ff6ce9c 2056 SMART SM00490 1149 1233 8.1E-6 T 23-04-2016 IPR001650 Helicase, C-terminal RPE_RS10865 db2b2bea04efc713b533ba393ff6ce9c 2056 Pfam PF09369 Domain of unknown function (DUF1998) 1704 1784 1.7E-9 T 23-04-2016 IPR018973 DEAD/DEAH-box helicase, putative RPE_RS10865 db2b2bea04efc713b533ba393ff6ce9c 2056 SUPERFAMILY SSF52540 1148 1262 8.65E-23 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10865 db2b2bea04efc713b533ba393ff6ce9c 2056 SUPERFAMILY SSF52540 107 170 8.65E-23 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10865 db2b2bea04efc713b533ba393ff6ce9c 2056 Pfam PF00271 Helicase conserved C-terminal domain 1189 1233 1.0E-6 T 23-04-2016 IPR001650 Helicase, C-terminal RPE_RS10865 db2b2bea04efc713b533ba393ff6ce9c 2056 SUPERFAMILY SSF52540 46 186 3.59E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10865 db2b2bea04efc713b533ba393ff6ce9c 2056 Pfam PF00270 DEAD/DEAH box helicase 89 176 8.5E-10 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RPE_RS10865 db2b2bea04efc713b533ba393ff6ce9c 2056 SMART SM00487 83 418 8.6E-18 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RPE_RS10865 db2b2bea04efc713b533ba393ff6ce9c 2056 Gene3D G3DSA:3.40.50.300 814 836 9.5E-18 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10865 db2b2bea04efc713b533ba393ff6ce9c 2056 Gene3D G3DSA:3.40.50.300 977 978 9.5E-18 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10865 db2b2bea04efc713b533ba393ff6ce9c 2056 Gene3D G3DSA:3.40.50.300 1181 1249 9.5E-18 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10865 db2b2bea04efc713b533ba393ff6ce9c 2056 SUPERFAMILY SSF52540 289 384 3.59E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10865 db2b2bea04efc713b533ba393ff6ce9c 2056 PANTHER PTHR24031 1365 1398 1.2E-22 T 23-04-2016 RPE_RS10865 db2b2bea04efc713b533ba393ff6ce9c 2056 PANTHER PTHR24031 295 311 1.2E-22 T 23-04-2016 RPE_RS10865 db2b2bea04efc713b533ba393ff6ce9c 2056 PANTHER PTHR24031 794 840 1.2E-22 T 23-04-2016 RPE_RS10865 db2b2bea04efc713b533ba393ff6ce9c 2056 PANTHER PTHR24031 332 381 1.2E-22 T 23-04-2016 RPE_RS10865 db2b2bea04efc713b533ba393ff6ce9c 2056 PANTHER PTHR24031 84 213 1.2E-22 T 23-04-2016 RPE_RS10865 db2b2bea04efc713b533ba393ff6ce9c 2056 PANTHER PTHR24031 1185 1273 1.2E-22 T 23-04-2016 RPE_RS10865 db2b2bea04efc713b533ba393ff6ce9c 2056 Gene3D G3DSA:3.40.50.300 82 184 9.6E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10865 db2b2bea04efc713b533ba393ff6ce9c 2056 Gene3D G3DSA:3.40.50.300 287 384 9.6E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10865 db2b2bea04efc713b533ba393ff6ce9c 2056 PANTHER PTHR24031:SF249 1365 1398 1.2E-22 T 23-04-2016 RPE_RS10865 db2b2bea04efc713b533ba393ff6ce9c 2056 PANTHER PTHR24031:SF249 295 311 1.2E-22 T 23-04-2016 RPE_RS10865 db2b2bea04efc713b533ba393ff6ce9c 2056 PANTHER PTHR24031:SF249 794 840 1.2E-22 T 23-04-2016 RPE_RS10865 db2b2bea04efc713b533ba393ff6ce9c 2056 PANTHER PTHR24031:SF249 332 381 1.2E-22 T 23-04-2016 RPE_RS10865 db2b2bea04efc713b533ba393ff6ce9c 2056 PANTHER PTHR24031:SF249 84 213 1.2E-22 T 23-04-2016 RPE_RS10865 db2b2bea04efc713b533ba393ff6ce9c 2056 PANTHER PTHR24031:SF249 1185 1273 1.2E-22 T 23-04-2016 RPE_RS23160 e67273d274e241ee21ea4d22be19a85b 162 PANTHER PTHR34186 3 159 2.1E-73 T 23-04-2016 RPE_RS23160 e67273d274e241ee21ea4d22be19a85b 162 TIGRFAM TIGR00673 cynS: cyanase 5 148 1.2E-39 T 23-04-2016 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RPE_RS23160 e67273d274e241ee21ea4d22be19a85b 162 PRINTS PR01693 Cyanase signature 84 98 1.8E-20 T 23-04-2016 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RPE_RS23160 e67273d274e241ee21ea4d22be19a85b 162 PRINTS PR01693 Cyanase signature 14 29 1.8E-20 T 23-04-2016 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RPE_RS23160 e67273d274e241ee21ea4d22be19a85b 162 PRINTS PR01693 Cyanase signature 133 143 1.8E-20 T 23-04-2016 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RPE_RS23160 e67273d274e241ee21ea4d22be19a85b 162 PRINTS PR01693 Cyanase signature 102 118 1.8E-20 T 23-04-2016 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RPE_RS23160 e67273d274e241ee21ea4d22be19a85b 162 Gene3D G3DSA:1.10.260.40 1 80 4.7E-25 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS23160 e67273d274e241ee21ea4d22be19a85b 162 PIRSF PIRSF001263 1 148 1.3E-40 T 23-04-2016 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RPE_RS23160 e67273d274e241ee21ea4d22be19a85b 162 Pfam PF02560 Cyanate lyase C-terminal domain 79 146 5.1E-33 T 23-04-2016 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RPE_RS23160 e67273d274e241ee21ea4d22be19a85b 162 Gene3D G3DSA:3.30.1160.10 82 147 4.1E-33 T 23-04-2016 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RPE_RS23160 e67273d274e241ee21ea4d22be19a85b 162 SMART SM01116 76 148 2.3E-43 T 23-04-2016 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RPE_RS23160 e67273d274e241ee21ea4d22be19a85b 162 SUPERFAMILY SSF47413 1 75 9.0E-11 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS23160 e67273d274e241ee21ea4d22be19a85b 162 PANTHER PTHR34186:SF2 3 159 2.1E-73 T 23-04-2016 RPE_RS23160 e67273d274e241ee21ea4d22be19a85b 162 Hamap MF_00535 Cyanate hydratase [cynS]. 1 162 83.532 T 23-04-2016 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RPE_RS23160 e67273d274e241ee21ea4d22be19a85b 162 SUPERFAMILY SSF55234 80 148 3.27E-28 T 23-04-2016 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RPE_RS18445 ff1080b95c72acabc165817fcc4f3e7f 305 Gene3D G3DSA:1.10.3720.10 34 291 9.5E-59 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS18445 ff1080b95c72acabc165817fcc4f3e7f 305 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 297 1.5E-17 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS18445 ff1080b95c72acabc165817fcc4f3e7f 305 SUPERFAMILY SSF161098 33 300 4.77E-62 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS18445 ff1080b95c72acabc165817fcc4f3e7f 305 PANTHER PTHR32243:SF18 25 305 4.9E-115 T 23-04-2016 RPE_RS18445 ff1080b95c72acabc165817fcc4f3e7f 305 PANTHER PTHR32243 25 305 4.9E-115 T 23-04-2016 RPE_RS15210 bbff80a22a34668d22b0dcee776eae6f 210 Gene3D G3DSA:3.40.50.1010 3 167 5.2E-49 T 23-04-2016 IPR029060 PIN domain-like RPE_RS15210 bbff80a22a34668d22b0dcee776eae6f 210 Pfam PF01936 NYN domain 7 164 2.4E-39 T 23-04-2016 IPR021139 NYN domain, limkain-b1-type RPE_RS15210 bbff80a22a34668d22b0dcee776eae6f 210 PANTHER PTHR35458:SF1 2 205 9.0E-111 T 23-04-2016 RPE_RS15210 bbff80a22a34668d22b0dcee776eae6f 210 PANTHER PTHR35458 2 205 9.0E-111 T 23-04-2016 RPE_RS17140 e259c083a752b8817cb6152524d4c268 272 Gene3D G3DSA:3.20.20.100 6 259 7.2E-94 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RPE_RS17140 e259c083a752b8817cb6152524d4c268 272 PRINTS PR00069 Aldo-keto reductase signature 154 183 6.7E-44 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RPE_RS17140 e259c083a752b8817cb6152524d4c268 272 PRINTS PR00069 Aldo-keto reductase signature 191 215 6.7E-44 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RPE_RS17140 e259c083a752b8817cb6152524d4c268 272 PRINTS PR00069 Aldo-keto reductase signature 89 107 6.7E-44 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RPE_RS17140 e259c083a752b8817cb6152524d4c268 272 PRINTS PR00069 Aldo-keto reductase signature 120 137 6.7E-44 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RPE_RS17140 e259c083a752b8817cb6152524d4c268 272 PRINTS PR00069 Aldo-keto reductase signature 33 57 6.7E-44 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RPE_RS17140 e259c083a752b8817cb6152524d4c268 272 Pfam PF00248 Aldo/keto reductase family 14 254 1.7E-57 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RPE_RS17140 e259c083a752b8817cb6152524d4c268 272 PANTHER PTHR11732:SF100 1 272 2.4E-131 T 23-04-2016 RPE_RS17140 e259c083a752b8817cb6152524d4c268 272 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 120 137 - T 23-04-2016 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 RPE_RS17140 e259c083a752b8817cb6152524d4c268 272 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 224 239 - T 23-04-2016 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 RPE_RS17140 e259c083a752b8817cb6152524d4c268 272 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 37 54 - T 23-04-2016 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 RPE_RS17140 e259c083a752b8817cb6152524d4c268 272 SUPERFAMILY SSF51430 5 259 3.14E-86 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RPE_RS17140 e259c083a752b8817cb6152524d4c268 272 PANTHER PTHR11732 1 272 2.4E-131 T 23-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta RPE_RS16265 995622cea1aa8ef34daeb008217a5b76 143 Gene3D G3DSA:3.40.50.1010 2 134 6.1E-19 T 23-04-2016 IPR029060 PIN domain-like RPE_RS16265 995622cea1aa8ef34daeb008217a5b76 143 PANTHER PTHR33653:SF1 1 141 1.2E-21 T 23-04-2016 RPE_RS16265 995622cea1aa8ef34daeb008217a5b76 143 PANTHER PTHR33653 1 141 1.2E-21 T 23-04-2016 RPE_RS16265 995622cea1aa8ef34daeb008217a5b76 143 Pfam PF01850 PIN domain 4 130 5.9E-9 T 23-04-2016 IPR002716 PIN domain RPE_RS16265 995622cea1aa8ef34daeb008217a5b76 143 SUPERFAMILY SSF88723 2 138 1.23E-24 T 23-04-2016 IPR029060 PIN domain-like RPE_RS03325 6b4a23f68447a823f9d01c9ca6bb9f9d 73 PRINTS PR01249 Ribosomal protein L31 signature 50 68 2.1E-9 T 23-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS03325 6b4a23f68447a823f9d01c9ca6bb9f9d 73 PRINTS PR01249 Ribosomal protein L31 signature 2 19 2.1E-9 T 23-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS03325 6b4a23f68447a823f9d01c9ca6bb9f9d 73 SUPERFAMILY SSF143800 1 71 1.18E-22 T 23-04-2016 RPE_RS03325 6b4a23f68447a823f9d01c9ca6bb9f9d 73 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 72 26.053 T 23-04-2016 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS03325 6b4a23f68447a823f9d01c9ca6bb9f9d 73 Pfam PF01197 Ribosomal protein L31 1 68 1.6E-26 T 23-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS03325 6b4a23f68447a823f9d01c9ca6bb9f9d 73 PANTHER PTHR33280 1 73 4.1E-28 T 23-04-2016 RPE_RS03325 6b4a23f68447a823f9d01c9ca6bb9f9d 73 ProSitePatterns PS01143 Ribosomal protein L31 signature. 38 60 - T 23-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS03325 6b4a23f68447a823f9d01c9ca6bb9f9d 73 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 70 3.1E-34 T 23-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS13880 967fe070ee980d24195ac0e4a15a6692 916 SUPERFAMILY SSF56719 41 523 5.75E-181 T 23-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 RPE_RS13880 967fe070ee980d24195ac0e4a15a6692 916 PANTHER PTHR10169:SF48 16 423 0.0 T 23-04-2016 RPE_RS13880 967fe070ee980d24195ac0e4a15a6692 916 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 18 904 0.0 T 23-04-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RPE_RS13880 967fe070ee980d24195ac0e4a15a6692 916 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 42 507 1.2E-153 T 23-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS13880 967fe070ee980d24195ac0e4a15a6692 916 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 539 585 7.5E-14 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RPE_RS13880 967fe070ee980d24195ac0e4a15a6692 916 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 858 902 8.3E-11 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RPE_RS13880 967fe070ee980d24195ac0e4a15a6692 916 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 808 854 2.2E-10 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RPE_RS13880 967fe070ee980d24195ac0e4a15a6692 916 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 591 638 1.5E-4 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RPE_RS13880 967fe070ee980d24195ac0e4a15a6692 916 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 696 743 3.9E-9 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RPE_RS13880 967fe070ee980d24195ac0e4a15a6692 916 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 649 692 3.7E-8 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RPE_RS13880 967fe070ee980d24195ac0e4a15a6692 916 PANTHER PTHR10169 804 879 0.0 T 23-04-2016 RPE_RS13880 967fe070ee980d24195ac0e4a15a6692 916 Gene3D G3DSA:3.30.1360.40 246 342 7.2E-39 T 23-04-2016 IPR024946 Arginine repressor C-terminal-like domain RPE_RS13880 967fe070ee980d24195ac0e4a15a6692 916 Gene3D G3DSA:2.120.10.90 531 744 5.8E-118 T 23-04-2016 RPE_RS13880 967fe070ee980d24195ac0e4a15a6692 916 Gene3D G3DSA:2.120.10.90 805 904 5.8E-118 T 23-04-2016 RPE_RS13880 967fe070ee980d24195ac0e4a15a6692 916 PANTHER PTHR10169:SF48 451 743 0.0 T 23-04-2016 RPE_RS13880 967fe070ee980d24195ac0e4a15a6692 916 Gene3D G3DSA:3.90.199.10 44 226 3.8E-83 T 23-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 RPE_RS13880 967fe070ee980d24195ac0e4a15a6692 916 SMART SM00434 21 500 7.3E-286 T 23-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS13880 967fe070ee980d24195ac0e4a15a6692 916 PANTHER PTHR10169:SF48 804 879 0.0 T 23-04-2016 RPE_RS13880 967fe070ee980d24195ac0e4a15a6692 916 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 13 908 28.499 T 23-04-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RPE_RS13880 967fe070ee980d24195ac0e4a15a6692 916 SUPERFAMILY SSF101904 805 910 5.75E-97 T 23-04-2016 RPE_RS13880 967fe070ee980d24195ac0e4a15a6692 916 SUPERFAMILY SSF101904 534 745 5.75E-97 T 23-04-2016 RPE_RS13880 967fe070ee980d24195ac0e4a15a6692 916 PANTHER PTHR10169 16 423 0.0 T 23-04-2016 RPE_RS13880 967fe070ee980d24195ac0e4a15a6692 916 PANTHER PTHR10169 451 743 0.0 T 23-04-2016 RPE_RS13880 967fe070ee980d24195ac0e4a15a6692 916 Gene3D G3DSA:1.10.268.10 372 497 5.2E-42 T 23-04-2016 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS03760 32c3b6a1efea4d6f3031a26d533e91da 284 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 8 277 4.5E-89 T 23-04-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 RPE_RS03760 32c3b6a1efea4d6f3031a26d533e91da 284 SUPERFAMILY SSF53213 2 283 5.75E-93 T 23-04-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 RPE_RS03760 32c3b6a1efea4d6f3031a26d533e91da 284 Gene3D G3DSA:3.40.830.10 1 283 2.6E-118 T 23-04-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 RPE_RS05260 8ded95cf1532637fcac98c5a34094d12 243 Pfam PF13861 FlgD Tudor-like domain 94 225 1.5E-9 T 23-04-2016 IPR025963 FlgD Tudor-like domain RPE_RS05260 8ded95cf1532637fcac98c5a34094d12 243 Pfam PF03963 Flagellar hook capping protein - N-terminal region 18 84 4.3E-20 T 23-04-2016 IPR005648 Flagellar hook capping protein RPE_RS05260 8ded95cf1532637fcac98c5a34094d12 243 PANTHER PTHR30435:SF15 20 243 9.3E-28 T 23-04-2016 RPE_RS05260 8ded95cf1532637fcac98c5a34094d12 243 Pfam PF13860 FlgD Ig-like domain 115 185 2.0E-11 T 23-04-2016 IPR025965 FlgD Ig-like domain RPE_RS05260 8ded95cf1532637fcac98c5a34094d12 243 PANTHER PTHR30435 20 243 9.3E-28 T 23-04-2016 RPE_RS06255 171ec87c3344999e41f408385bbf6a4a 135 Pfam PF07449 Hydrogenase-1 expression protein HyaE 11 113 2.7E-27 T 23-04-2016 IPR010893 [NiFe]-hydrogenase maturation factor HyaE RPE_RS06255 171ec87c3344999e41f408385bbf6a4a 135 SUPERFAMILY SSF52833 4 122 9.49E-21 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS06255 171ec87c3344999e41f408385bbf6a4a 135 Gene3D G3DSA:3.40.30.10 16 98 6.0E-29 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS06255 171ec87c3344999e41f408385bbf6a4a 135 Gene3D G3DSA:1.20.5.510 99 131 2.6E-19 T 23-04-2016 RPE_RS06255 171ec87c3344999e41f408385bbf6a4a 135 PIRSF PIRSF038934 1 132 5.5E-39 T 23-04-2016 IPR010893 [NiFe]-hydrogenase maturation factor HyaE RPE_RS00265 beea6e4d9cffa717d928ce789081d888 259 Gene3D G3DSA:3.40.50.720 3 245 2.7E-52 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS00265 beea6e4d9cffa717d928ce789081d888 259 Pfam PF00106 short chain dehydrogenase 5 191 2.4E-42 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00265 beea6e4d9cffa717d928ce789081d888 259 SUPERFAMILY SSF51735 3 251 6.8E-54 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS00265 beea6e4d9cffa717d928ce789081d888 259 PANTHER PTHR24322:SF446 8 136 4.3E-59 T 23-04-2016 RPE_RS00265 beea6e4d9cffa717d928ce789081d888 259 PANTHER PTHR24322:SF446 152 184 4.3E-59 T 23-04-2016 RPE_RS00265 beea6e4d9cffa717d928ce789081d888 259 PANTHER PTHR24322 8 136 4.3E-59 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00265 beea6e4d9cffa717d928ce789081d888 259 PANTHER PTHR24322 152 184 4.3E-59 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00265 beea6e4d9cffa717d928ce789081d888 259 PIRSF PIRSF000126 2 259 4.6E-60 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00265 beea6e4d9cffa717d928ce789081d888 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 1.3E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00265 beea6e4d9cffa717d928ce789081d888 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 1.3E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00265 beea6e4d9cffa717d928ce789081d888 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 1.3E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00265 beea6e4d9cffa717d928ce789081d888 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 8.8E-24 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00265 beea6e4d9cffa717d928ce789081d888 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 8.8E-24 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00265 beea6e4d9cffa717d928ce789081d888 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 8.8E-24 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00265 beea6e4d9cffa717d928ce789081d888 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 8.8E-24 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00265 beea6e4d9cffa717d928ce789081d888 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 8.8E-24 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS12940 cb1e070e9cb50b42e8d463acc9eac1e9 135 Pfam PF07886 BA14K-like protein 109 135 3.3E-13 T 23-04-2016 IPR012413 BA14k family GO:0009405 RPE_RS16935 62c910606e67f21766fa74b902b42e2f 802 Gene3D G3DSA:2.40.50.140 641 715 1.7E-13 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS16935 62c910606e67f21766fa74b902b42e2f 802 PANTHER PTHR23355:SF9 141 723 5.2E-171 T 23-04-2016 RPE_RS16935 62c910606e67f21766fa74b902b42e2f 802 Pfam PF00773 RNB domain 261 591 3.2E-91 T 23-04-2016 RPE_RS16935 62c910606e67f21766fa74b902b42e2f 802 ProSitePatterns PS01175 Ribonuclease II family signature. 559 583 - T 23-04-2016 IPR022966 Ribonuclease II/R, conserved site RPE_RS16935 62c910606e67f21766fa74b902b42e2f 802 PANTHER PTHR23355 141 723 5.2E-171 T 23-04-2016 RPE_RS16935 62c910606e67f21766fa74b902b42e2f 802 SUPERFAMILY SSF50249 639 721 6.18E-17 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS16935 62c910606e67f21766fa74b902b42e2f 802 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 123 711 9.0E-142 T 23-04-2016 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 RPE_RS16935 62c910606e67f21766fa74b902b42e2f 802 Hamap MF_01895 Ribonuclease R [rnr]. 30 722 54.048 T 23-04-2016 IPR011805 Ribonuclease R GO:0003723|GO:0004518 RPE_RS16935 62c910606e67f21766fa74b902b42e2f 802 TIGRFAM TIGR02063 RNase_R: ribonuclease R 12 722 2.3E-212 T 23-04-2016 IPR011805 Ribonuclease R GO:0003723|GO:0004518 RPE_RS16935 62c910606e67f21766fa74b902b42e2f 802 Pfam PF00575 S1 RNA binding domain 639 691 2.4E-6 T 23-04-2016 IPR003029 S1 domain GO:0003676 RPE_RS16935 62c910606e67f21766fa74b902b42e2f 802 SMART SM00316 639 722 3.5E-5 T 23-04-2016 IPR022967 RNA-binding domain, S1 RPE_RS16935 62c910606e67f21766fa74b902b42e2f 802 SUPERFAMILY SSF50249 231 639 3.66E-129 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS16935 62c910606e67f21766fa74b902b42e2f 802 SMART SM00955 261 592 6.5E-152 T 23-04-2016 RPE_RS12030 d3656a8f97627e884bfffbe0c25ad75c 191 ProSitePatterns PS00460 Glutathione peroxidases active site. 55 70 - T 23-04-2016 IPR029759 Glutathione peroxidase active site RPE_RS12030 d3656a8f97627e884bfffbe0c25ad75c 191 Pfam PF00255 Glutathione peroxidase 36 140 1.2E-26 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 RPE_RS12030 d3656a8f97627e884bfffbe0c25ad75c 191 Gene3D G3DSA:3.40.30.10 33 184 1.3E-46 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS12030 d3656a8f97627e884bfffbe0c25ad75c 191 SUPERFAMILY SSF52833 33 186 1.18E-45 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS12030 d3656a8f97627e884bfffbe0c25ad75c 191 PIRSF PIRSF000303 11 191 5.6E-55 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 RPE_RS12030 d3656a8f97627e884bfffbe0c25ad75c 191 PANTHER PTHR11592 32 188 5.0E-65 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 RPE_RS12030 d3656a8f97627e884bfffbe0c25ad75c 191 PRINTS PR01011 Glutathione peroxidase family signature 150 159 1.0E-13 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 RPE_RS12030 d3656a8f97627e884bfffbe0c25ad75c 191 PRINTS PR01011 Glutathione peroxidase family signature 53 70 1.0E-13 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 RPE_RS12030 d3656a8f97627e884bfffbe0c25ad75c 191 PRINTS PR01011 Glutathione peroxidase family signature 88 104 1.0E-13 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 RPE_RS12030 d3656a8f97627e884bfffbe0c25ad75c 191 PANTHER PTHR11592:SF40 32 188 5.0E-65 T 23-04-2016 RPE_RS17315 e9306a512d75bd019671558362a5f3d4 102 Pfam PF00072 Response regulator receiver domain 3 102 8.8E-19 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS17315 e9306a512d75bd019671558362a5f3d4 102 PANTHER PTHR26402:SF578 1 102 3.1E-33 T 23-04-2016 RPE_RS17315 e9306a512d75bd019671558362a5f3d4 102 SMART SM00448 1 102 2.1E-15 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS17315 e9306a512d75bd019671558362a5f3d4 102 SUPERFAMILY SSF52172 1 102 3.13E-25 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS17315 e9306a512d75bd019671558362a5f3d4 102 Gene3D G3DSA:3.40.50.2300 1 102 6.1E-24 T 23-04-2016 RPE_RS17315 e9306a512d75bd019671558362a5f3d4 102 PANTHER PTHR26402 1 102 3.1E-33 T 23-04-2016 RPE_RS15145 e5f2b062503481f866176faeb37fc8b6 458 PRINTS PR00447 Natural resistance-associated macrophage protein signature 131 157 1.9E-60 T 23-04-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 RPE_RS15145 e5f2b062503481f866176faeb37fc8b6 458 PRINTS PR00447 Natural resistance-associated macrophage protein signature 236 259 1.9E-60 T 23-04-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 RPE_RS15145 e5f2b062503481f866176faeb37fc8b6 458 PRINTS PR00447 Natural resistance-associated macrophage protein signature 184 205 1.9E-60 T 23-04-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 RPE_RS15145 e5f2b062503481f866176faeb37fc8b6 458 PRINTS PR00447 Natural resistance-associated macrophage protein signature 368 385 1.9E-60 T 23-04-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 RPE_RS15145 e5f2b062503481f866176faeb37fc8b6 458 PRINTS PR00447 Natural resistance-associated macrophage protein signature 340 359 1.9E-60 T 23-04-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 RPE_RS15145 e5f2b062503481f866176faeb37fc8b6 458 PRINTS PR00447 Natural resistance-associated macrophage protein signature 400 419 1.9E-60 T 23-04-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 RPE_RS15145 e5f2b062503481f866176faeb37fc8b6 458 PRINTS PR00447 Natural resistance-associated macrophage protein signature 159 178 1.9E-60 T 23-04-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 RPE_RS15145 e5f2b062503481f866176faeb37fc8b6 458 TIGRFAM TIGR01197 nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 50 424 2.1E-119 T 23-04-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 RPE_RS15145 e5f2b062503481f866176faeb37fc8b6 458 Hamap MF_00221 Divalent metal cation transporter MntH [mntH]. 40 456 38.537 T 23-04-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 RPE_RS15145 e5f2b062503481f866176faeb37fc8b6 458 Pfam PF01566 Natural resistance-associated macrophage protein 72 429 5.2E-135 T 23-04-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 RPE_RS15145 e5f2b062503481f866176faeb37fc8b6 458 PANTHER PTHR11706 19 458 6.6E-198 T 23-04-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 RPE_RS01725 8db5627b13a8c55ed0b13a23f0e45197 100 Pfam PF07045 Domain of unknown function (DUF1330) 3 95 4.5E-33 T 23-04-2016 IPR010753 Domain of unknown function DUF1330 RPE_RS01725 8db5627b13a8c55ed0b13a23f0e45197 100 PANTHER PTHR41521 1 100 1.9E-21 T 23-04-2016 RPE_RS01725 8db5627b13a8c55ed0b13a23f0e45197 100 SUPERFAMILY SSF54909 1 95 5.9E-29 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RPE_RS01725 8db5627b13a8c55ed0b13a23f0e45197 100 Gene3D G3DSA:3.30.70.900 1 96 3.2E-33 T 23-04-2016 RPE_RS24420 6dbebb80314e9c3146e1f2d00f309bad 234 PANTHER PTHR26402:SF576 3 228 7.0E-93 T 23-04-2016 RPE_RS24420 6dbebb80314e9c3146e1f2d00f309bad 234 Gene3D G3DSA:1.10.10.10 130 227 3.4E-35 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS24420 6dbebb80314e9c3146e1f2d00f309bad 234 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 1 226 7.1E-108 T 23-04-2016 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 RPE_RS24420 6dbebb80314e9c3146e1f2d00f309bad 234 Pfam PF00072 Response regulator receiver domain 5 117 2.8E-29 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS24420 6dbebb80314e9c3146e1f2d00f309bad 234 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 225 4.2E-28 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS24420 6dbebb80314e9c3146e1f2d00f309bad 234 SMART SM00862 150 225 4.3E-30 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS24420 6dbebb80314e9c3146e1f2d00f309bad 234 SMART SM00448 3 116 5.5E-45 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS24420 6dbebb80314e9c3146e1f2d00f309bad 234 SUPERFAMILY SSF46894 130 225 2.3E-32 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RPE_RS24420 6dbebb80314e9c3146e1f2d00f309bad 234 PANTHER PTHR26402 3 228 7.0E-93 T 23-04-2016 RPE_RS24420 6dbebb80314e9c3146e1f2d00f309bad 234 SUPERFAMILY SSF52172 2 126 2.13E-42 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS24420 6dbebb80314e9c3146e1f2d00f309bad 234 Gene3D G3DSA:3.40.50.2300 3 124 2.6E-42 T 23-04-2016 RPE_RS21950 e789f3f3bbb2d2ec7bbc26d40ac827f4 217 PANTHER PTHR30037:SF4 1 206 9.3E-115 T 23-04-2016 RPE_RS21950 e789f3f3bbb2d2ec7bbc26d40ac827f4 217 PANTHER PTHR30037 1 206 9.3E-115 T 23-04-2016 RPE_RS21950 e789f3f3bbb2d2ec7bbc26d40ac827f4 217 SUPERFAMILY SSF48150 12 195 1.57E-75 T 23-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RPE_RS21950 e789f3f3bbb2d2ec7bbc26d40ac827f4 217 Pfam PF03352 Methyladenine glycosylase 16 192 3.6E-74 T 23-04-2016 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 RPE_RS21950 e789f3f3bbb2d2ec7bbc26d40ac827f4 217 TIGRFAM TIGR00624 tag: DNA-3-methyladenine glycosylase I 13 191 4.2E-73 T 23-04-2016 IPR004597 DNA-3-methyladenine glycosylase I GO:0006284|GO:0008725 RPE_RS21950 e789f3f3bbb2d2ec7bbc26d40ac827f4 217 Gene3D G3DSA:1.10.340.30 12 192 1.4E-76 T 23-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RPE_RS11920 038466429eebc13e2f41c2c134e23316 306 Gene3D G3DSA:3.10.129.10 144 293 1.9E-11 T 23-04-2016 IPR029069 HotDog domain RPE_RS11920 038466429eebc13e2f41c2c134e23316 306 SUPERFAMILY SSF54637 185 291 2.24E-13 T 23-04-2016 IPR029069 HotDog domain RPE_RS00590 3c24ffe817cbd0480c43fc4b38d304fa 260 SUPERFAMILY SSF51735 5 258 3.73E-67 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS00590 3c24ffe817cbd0480c43fc4b38d304fa 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 220 240 1.5E-34 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00590 3c24ffe817cbd0480c43fc4b38d304fa 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 152 1.5E-34 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00590 3c24ffe817cbd0480c43fc4b38d304fa 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 1.5E-34 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00590 3c24ffe817cbd0480c43fc4b38d304fa 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.5E-34 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00590 3c24ffe817cbd0480c43fc4b38d304fa 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 1.5E-34 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00590 3c24ffe817cbd0480c43fc4b38d304fa 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 1.5E-34 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00590 3c24ffe817cbd0480c43fc4b38d304fa 260 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 149 177 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RPE_RS00590 3c24ffe817cbd0480c43fc4b38d304fa 260 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 257 3.4E-55 T 23-04-2016 RPE_RS00590 3c24ffe817cbd0480c43fc4b38d304fa 260 Gene3D G3DSA:3.40.50.720 6 258 7.0E-72 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS00590 3c24ffe817cbd0480c43fc4b38d304fa 260 PANTHER PTHR24322 10 146 1.3E-46 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00590 3c24ffe817cbd0480c43fc4b38d304fa 260 PANTHER PTHR24322 162 193 1.3E-46 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00590 3c24ffe817cbd0480c43fc4b38d304fa 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 150 7.9E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00590 3c24ffe817cbd0480c43fc4b38d304fa 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 7.9E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00590 3c24ffe817cbd0480c43fc4b38d304fa 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 7.9E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00590 3c24ffe817cbd0480c43fc4b38d304fa 260 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 197 4.9E-4 T 23-04-2016 RPE_RS21520 90e8ae1313b873a518215589f0368b66 370 Pfam PF02515 CoA-transferase family III 4 330 2.6E-102 T 23-04-2016 IPR003673 CoA-transferase family III GO:0003824 RPE_RS21520 90e8ae1313b873a518215589f0368b66 370 Gene3D G3DSA:3.40.50.10540 2 212 9.4E-85 T 23-04-2016 IPR023606 CoA-transferase family III domain RPE_RS21520 90e8ae1313b873a518215589f0368b66 370 Gene3D G3DSA:3.40.50.10540 302 365 9.4E-85 T 23-04-2016 IPR023606 CoA-transferase family III domain RPE_RS21520 90e8ae1313b873a518215589f0368b66 370 PANTHER PTHR24023:SF593 227 360 5.3E-19 T 23-04-2016 RPE_RS21520 90e8ae1313b873a518215589f0368b66 370 PANTHER PTHR24023:SF593 75 210 5.3E-19 T 23-04-2016 RPE_RS21520 90e8ae1313b873a518215589f0368b66 370 Gene3D G3DSA:3.30.1540.10 217 301 2.8E-24 T 23-04-2016 RPE_RS21520 90e8ae1313b873a518215589f0368b66 370 SUPERFAMILY SSF89796 1 365 7.06E-105 T 23-04-2016 IPR023606 CoA-transferase family III domain RPE_RS21520 90e8ae1313b873a518215589f0368b66 370 PANTHER PTHR24023 227 360 5.3E-19 T 23-04-2016 RPE_RS21520 90e8ae1313b873a518215589f0368b66 370 PANTHER PTHR24023 75 210 5.3E-19 T 23-04-2016 RPE_RS06225 b743145426a48f0b378dee469cd9195b 481 PANTHER PTHR11993 1 116 2.3E-132 T 23-04-2016 RPE_RS06225 b743145426a48f0b378dee469cd9195b 481 PANTHER PTHR11993 308 481 2.3E-132 T 23-04-2016 RPE_RS06225 b743145426a48f0b378dee469cd9195b 481 PANTHER PTHR11993 137 205 2.3E-132 T 23-04-2016 RPE_RS06225 b743145426a48f0b378dee469cd9195b 481 Pfam PF00374 Nickel-dependent hydrogenase 39 117 3.7E-15 T 23-04-2016 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 RPE_RS06225 b743145426a48f0b378dee469cd9195b 481 Pfam PF00374 Nickel-dependent hydrogenase 144 481 1.6E-54 T 23-04-2016 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 RPE_RS06225 b743145426a48f0b378dee469cd9195b 481 SUPERFAMILY SSF56762 1 202 4.19E-121 T 23-04-2016 IPR029014 NiFe hydrogenase-like RPE_RS06225 b743145426a48f0b378dee469cd9195b 481 SUPERFAMILY SSF56762 229 481 4.19E-121 T 23-04-2016 IPR029014 NiFe hydrogenase-like RPE_RS06225 b743145426a48f0b378dee469cd9195b 481 PANTHER PTHR11993:SF26 1 116 2.3E-132 T 23-04-2016 RPE_RS06225 b743145426a48f0b378dee469cd9195b 481 PANTHER PTHR11993:SF26 308 481 2.3E-132 T 23-04-2016 RPE_RS06225 b743145426a48f0b378dee469cd9195b 481 PANTHER PTHR11993:SF26 137 205 2.3E-132 T 23-04-2016 RPE_RS06225 b743145426a48f0b378dee469cd9195b 481 Gene3D G3DSA:1.10.645.10 1 481 1.7E-126 T 23-04-2016 IPR029014 NiFe hydrogenase-like RPE_RS06225 b743145426a48f0b378dee469cd9195b 481 ProSitePatterns PS00507 Nickel-dependent hydrogenases large subunit signature 1. 39 64 - T 23-04-2016 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 RPE_RS23555 c1541c06323269d38425e3de23bf7dbe 136 Gene3D G3DSA:3.30.70.1060 1 117 6.8E-40 T 23-04-2016 RPE_RS23555 c1541c06323269d38425e3de23bf7dbe 136 PANTHER PTHR35174 2 129 2.2E-73 T 23-04-2016 RPE_RS23555 c1541c06323269d38425e3de23bf7dbe 136 PANTHER PTHR35174:SF2 2 129 2.2E-73 T 23-04-2016 RPE_RS23555 c1541c06323269d38425e3de23bf7dbe 136 SUPERFAMILY SSF54909 1 118 6.7E-35 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RPE_RS23555 c1541c06323269d38425e3de23bf7dbe 136 Pfam PF03795 YCII-related domain 1 115 8.9E-28 T 23-04-2016 IPR005545 YCII-related RPE_RS02605 ad34d29fe04ffe66e0dc4892ce56a308 131 SUPERFAMILY SSF161084 2 128 1.01E-43 T 23-04-2016 RPE_RS02605 ad34d29fe04ffe66e0dc4892ce56a308 131 Pfam PF01124 MAPEG family 6 121 3.8E-21 T 23-04-2016 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein RPE_RS02605 ad34d29fe04ffe66e0dc4892ce56a308 131 PANTHER PTHR10250:SF15 1 129 1.0E-42 T 23-04-2016 RPE_RS02605 ad34d29fe04ffe66e0dc4892ce56a308 131 PANTHER PTHR10250 1 129 1.0E-42 T 23-04-2016 RPE_RS02605 ad34d29fe04ffe66e0dc4892ce56a308 131 Gene3D G3DSA:1.20.120.550 2 129 1.8E-45 T 23-04-2016 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain RPE_RS03650 f32eccbda8fb25a0fa39803bcece1430 406 Pfam PF13458 Periplasmic binding protein 40 392 2.1E-58 T 23-04-2016 IPR028081 Leucine-binding protein domain RPE_RS03650 f32eccbda8fb25a0fa39803bcece1430 406 PANTHER PTHR30483 11 399 5.0E-166 T 23-04-2016 RPE_RS03650 f32eccbda8fb25a0fa39803bcece1430 406 PANTHER PTHR30483:SF11 11 399 5.0E-166 T 23-04-2016 RPE_RS03650 f32eccbda8fb25a0fa39803bcece1430 406 SUPERFAMILY SSF53822 40 399 1.88E-66 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RPE_RS03650 f32eccbda8fb25a0fa39803bcece1430 406 Gene3D G3DSA:3.40.50.2300 40 239 8.5E-42 T 23-04-2016 RPE_RS21415 64dcff4c1f57e3b4cc5d8ceff2534dfc 279 PANTHER PTHR20854 10 255 2.6E-64 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RPE_RS21415 64dcff4c1f57e3b4cc5d8ceff2534dfc 279 PRINTS PR00377 Inositol monophosphatase superfamily signature 94 110 1.9E-10 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RPE_RS21415 64dcff4c1f57e3b4cc5d8ceff2534dfc 279 PRINTS PR00377 Inositol monophosphatase superfamily signature 51 71 1.9E-10 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RPE_RS21415 64dcff4c1f57e3b4cc5d8ceff2534dfc 279 PRINTS PR00377 Inositol monophosphatase superfamily signature 226 250 1.9E-10 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RPE_RS21415 64dcff4c1f57e3b4cc5d8ceff2534dfc 279 Gene3D G3DSA:3.30.540.10 20 160 2.9E-34 T 23-04-2016 RPE_RS21415 64dcff4c1f57e3b4cc5d8ceff2534dfc 279 Gene3D G3DSA:3.40.190.80 172 273 1.8E-34 T 23-04-2016 RPE_RS21415 64dcff4c1f57e3b4cc5d8ceff2534dfc 279 PANTHER PTHR20854:SF5 10 255 2.6E-64 T 23-04-2016 RPE_RS21415 64dcff4c1f57e3b4cc5d8ceff2534dfc 279 SUPERFAMILY SSF56655 19 275 2.75E-65 T 23-04-2016 RPE_RS21415 64dcff4c1f57e3b4cc5d8ceff2534dfc 279 Pfam PF00459 Inositol monophosphatase family 31 253 3.1E-45 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RPE_RS21415 64dcff4c1f57e3b4cc5d8ceff2534dfc 279 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 229 243 - T 23-04-2016 IPR020550 Inositol monophosphatase, conserved site GO:0046854 RPE_RS16075 d852e5205bed62e8a834cb6aa86b388f 584 SUPERFAMILY SSF52540 335 580 5.33E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16075 d852e5205bed62e8a834cb6aa86b388f 584 PANTHER PTHR24220:SF358 338 581 1.2E-102 T 23-04-2016 RPE_RS16075 d852e5205bed62e8a834cb6aa86b388f 584 Pfam PF02653 Branched-chain amino acid transport system / permease component 26 295 1.0E-32 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RPE_RS16075 d852e5205bed62e8a834cb6aa86b388f 584 Pfam PF00005 ABC transporter 353 510 6.3E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS16075 d852e5205bed62e8a834cb6aa86b388f 584 Gene3D G3DSA:3.40.50.300 334 579 7.5E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16075 d852e5205bed62e8a834cb6aa86b388f 584 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 563 581 1.3E-6 T 23-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RPE_RS16075 d852e5205bed62e8a834cb6aa86b388f 584 PANTHER PTHR24220 338 581 1.2E-102 T 23-04-2016 RPE_RS16075 d852e5205bed62e8a834cb6aa86b388f 584 SMART SM00382 361 561 3.9E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS18895 cb29cafe5e7e900780e21f9538593780 395 Pfam PF00108 Thiolase, N-terminal domain 5 263 4.9E-62 T 23-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 RPE_RS18895 cb29cafe5e7e900780e21f9538593780 395 SUPERFAMILY SSF53901 1 267 2.76E-65 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS18895 cb29cafe5e7e900780e21f9538593780 395 SUPERFAMILY SSF53901 272 393 8.64E-41 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS18895 cb29cafe5e7e900780e21f9538593780 395 PANTHER PTHR18919 1 395 4.3E-254 T 23-04-2016 RPE_RS18895 cb29cafe5e7e900780e21f9538593780 395 Gene3D G3DSA:3.40.47.10 4 125 3.5E-59 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS18895 cb29cafe5e7e900780e21f9538593780 395 Gene3D G3DSA:3.40.47.10 186 275 3.5E-59 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS18895 cb29cafe5e7e900780e21f9538593780 395 ProSitePatterns PS00099 Thiolases active site. 375 388 - T 23-04-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 RPE_RS18895 cb29cafe5e7e900780e21f9538593780 395 Pfam PF02803 Thiolase, C-terminal domain 271 392 4.4E-43 T 23-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 RPE_RS18895 cb29cafe5e7e900780e21f9538593780 395 Gene3D G3DSA:3.40.47.10 146 185 2.8E-60 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS18895 cb29cafe5e7e900780e21f9538593780 395 Gene3D G3DSA:3.40.47.10 278 393 2.8E-60 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS18895 cb29cafe5e7e900780e21f9538593780 395 PANTHER PTHR18919:SF14 1 395 4.3E-254 T 23-04-2016 RPE_RS18895 cb29cafe5e7e900780e21f9538593780 395 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 392 1.9E-124 T 23-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RPE_RS18895 cb29cafe5e7e900780e21f9538593780 395 ProSitePatterns PS00737 Thiolases signature 2. 340 356 - T 23-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 RPE_RS18895 cb29cafe5e7e900780e21f9538593780 395 PIRSF PIRSF000429 1 395 5.0E-116 T 23-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RPE_RS14760 75c936a32903f92d9e118e967cabf6b8 439 Pfam PF01842 ACT domain 350 421 1.4E-7 T 23-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 RPE_RS14760 75c936a32903f92d9e118e967cabf6b8 439 Gene3D G3DSA:3.40.50.720 4 150 4.4E-47 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS14760 75c936a32903f92d9e118e967cabf6b8 439 PANTHER PTHR21499 1 371 1.2E-125 T 23-04-2016 RPE_RS14760 75c936a32903f92d9e118e967cabf6b8 439 SUPERFAMILY SSF55021 342 387 1.49E-6 T 23-04-2016 RPE_RS14760 75c936a32903f92d9e118e967cabf6b8 439 SUPERFAMILY SSF51735 3 160 1.21E-29 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS14760 75c936a32903f92d9e118e967cabf6b8 439 Gene3D G3DSA:3.30.360.10 151 300 4.1E-54 T 23-04-2016 RPE_RS14760 75c936a32903f92d9e118e967cabf6b8 439 PANTHER PTHR21499:SF2 1 371 1.2E-125 T 23-04-2016 RPE_RS14760 75c936a32903f92d9e118e967cabf6b8 439 SUPERFAMILY SSF55347 139 304 1.11E-50 T 23-04-2016 RPE_RS14760 75c936a32903f92d9e118e967cabf6b8 439 Gene3D G3DSA:3.30.70.260 350 384 6.0E-5 T 23-04-2016 RPE_RS14760 75c936a32903f92d9e118e967cabf6b8 439 Pfam PF00742 Homoserine dehydrogenase 139 316 3.6E-61 T 23-04-2016 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 RPE_RS14760 75c936a32903f92d9e118e967cabf6b8 439 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 185 207 - T 23-04-2016 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 RPE_RS14760 75c936a32903f92d9e118e967cabf6b8 439 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 11 130 1.2E-13 T 23-04-2016 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 RPE_RS14760 75c936a32903f92d9e118e967cabf6b8 439 PIRSF PIRSF000098 2 439 1.3E-156 T 23-04-2016 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 RPE_RS21920 40a2bda8d151625083ddff2c29365d23 144 PANTHER PTHR22769 9 122 4.0E-23 T 23-04-2016 RPE_RS21920 40a2bda8d151625083ddff2c29365d23 144 ProSitePatterns PS00893 Nudix box signature. 46 67 - T 23-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RPE_RS21920 40a2bda8d151625083ddff2c29365d23 144 Gene3D G3DSA:3.90.79.10 12 142 7.8E-30 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS21920 40a2bda8d151625083ddff2c29365d23 144 SUPERFAMILY SSF55811 8 141 4.87E-30 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS21920 40a2bda8d151625083ddff2c29365d23 144 PRINTS PR00502 NUDIX hydrolase family signature 55 70 1.2E-5 T 23-04-2016 IPR020476 NUDIX hydrolase RPE_RS21920 40a2bda8d151625083ddff2c29365d23 144 PRINTS PR00502 NUDIX hydrolase family signature 41 55 1.2E-5 T 23-04-2016 IPR020476 NUDIX hydrolase RPE_RS21920 40a2bda8d151625083ddff2c29365d23 144 Pfam PF00293 NUDIX domain 14 124 1.3E-19 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RPE_RS23035 abc5cd8d7c093fc4cad6684e16307acf 251 Gene3D G3DSA:1.10.10.10 149 219 5.6E-11 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS23035 abc5cd8d7c093fc4cad6684e16307acf 251 SUPERFAMILY SSF46785 150 223 2.08E-15 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS23035 abc5cd8d7c093fc4cad6684e16307acf 251 Pfam PF13545 Crp-like helix-turn-helix domain 152 217 1.5E-15 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RPE_RS23035 abc5cd8d7c093fc4cad6684e16307acf 251 PANTHER PTHR24567 6 232 4.4E-64 T 23-04-2016 RPE_RS23035 abc5cd8d7c093fc4cad6684e16307acf 251 SUPERFAMILY SSF51206 11 129 1.61E-7 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like RPE_RS23035 abc5cd8d7c093fc4cad6684e16307acf 251 PANTHER PTHR24567:SF22 6 232 4.4E-64 T 23-04-2016 RPE_RS23035 abc5cd8d7c093fc4cad6684e16307acf 251 Gene3D G3DSA:2.60.120.10 11 138 5.9E-5 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS17580 caaddb1ec3dfbb92be2de9a69636944a 270 SUPERFAMILY SSF53448 3 209 6.05E-36 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS17580 caaddb1ec3dfbb92be2de9a69636944a 270 PANTHER PTHR22916 1 242 8.2E-38 T 23-04-2016 RPE_RS17580 caaddb1ec3dfbb92be2de9a69636944a 270 PANTHER PTHR22916:SF4 1 242 8.2E-38 T 23-04-2016 RPE_RS17580 caaddb1ec3dfbb92be2de9a69636944a 270 Pfam PF00535 Glycosyl transferase family 2 4 126 9.1E-20 T 23-04-2016 IPR001173 Glycosyltransferase 2-like RPE_RS17580 caaddb1ec3dfbb92be2de9a69636944a 270 Gene3D G3DSA:3.90.550.10 3 224 1.2E-34 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS06280 1a6cef082096471fc7d5377c0bf2ea7e 113 ProSitePatterns PS01249 Hydrogenases expression/synthesis hypA family signature. 34 76 - T 23-04-2016 IPR020538 Hydrogenase nickel incorporation protein HypA/HybF, conserved site RPE_RS06280 1a6cef082096471fc7d5377c0bf2ea7e 113 PANTHER PTHR34535 2 113 1.7E-54 T 23-04-2016 RPE_RS06280 1a6cef082096471fc7d5377c0bf2ea7e 113 PANTHER PTHR34535:SF2 2 113 1.7E-54 T 23-04-2016 RPE_RS06280 1a6cef082096471fc7d5377c0bf2ea7e 113 TIGRFAM TIGR00100 hypA: hydrogenase nickel insertion protein HypA 1 113 4.7E-36 T 23-04-2016 IPR000688 Hydrogenase nickel incorporation protein HypA/HybF GO:0006464|GO:0016151 RPE_RS06280 1a6cef082096471fc7d5377c0bf2ea7e 113 PIRSF PIRSF004761 1 113 1.3E-39 T 23-04-2016 IPR000688 Hydrogenase nickel incorporation protein HypA/HybF GO:0006464|GO:0016151 RPE_RS06280 1a6cef082096471fc7d5377c0bf2ea7e 113 Hamap MF_00213 Probable hydrogenase nickel incorporation protein HypA [hypA]. 1 113 24.605 T 23-04-2016 IPR000688 Hydrogenase nickel incorporation protein HypA/HybF GO:0006464|GO:0016151 RPE_RS06280 1a6cef082096471fc7d5377c0bf2ea7e 113 Pfam PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 1 112 3.3E-35 T 23-04-2016 IPR000688 Hydrogenase nickel incorporation protein HypA/HybF GO:0006464|GO:0016151 RPE_RS02410 5545af4f507d22c0199ea2bc7177e3e0 164 SMART SM01321 1 120 1.6E-27 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RPE_RS02410 5545af4f507d22c0199ea2bc7177e3e0 164 PANTHER PTHR36966 1 162 3.1E-26 T 23-04-2016 RPE_RS02410 5545af4f507d22c0199ea2bc7177e3e0 164 Gene3D G3DSA:3.30.70.1290 3 124 9.8E-14 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RPE_RS02410 5545af4f507d22c0199ea2bc7177e3e0 164 SUPERFAMILY SSF143422 2 125 1.83E-29 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RPE_RS02410 5545af4f507d22c0199ea2bc7177e3e0 164 PANTHER PTHR36966:SF1 1 162 3.1E-26 T 23-04-2016 RPE_RS02410 5545af4f507d22c0199ea2bc7177e3e0 164 Pfam PF01797 Transposase IS200 like 6 118 1.3E-6 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RPE_RS21005 e146ab1ef30ce4c7dac363c609c0a53e 398 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 128 138 - T 23-04-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RPE_RS21005 e146ab1ef30ce4c7dac363c609c0a53e 398 PANTHER PTHR11964 1 393 3.6E-195 T 23-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RPE_RS21005 e146ab1ef30ce4c7dac363c609c0a53e 398 Gene3D G3DSA:3.30.300.10 12 147 8.5E-35 T 23-04-2016 RPE_RS21005 e146ab1ef30ce4c7dac363c609c0a53e 398 SUPERFAMILY SSF55973 124 243 6.28E-42 T 23-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RPE_RS21005 e146ab1ef30ce4c7dac363c609c0a53e 398 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 245 387 3.9E-64 T 23-04-2016 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RPE_RS21005 e146ab1ef30ce4c7dac363c609c0a53e 398 Pfam PF02772 S-adenosylmethionine synthetase, central domain 127 243 3.6E-37 T 23-04-2016 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RPE_RS21005 e146ab1ef30ce4c7dac363c609c0a53e 398 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 271 279 - T 23-04-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RPE_RS21005 e146ab1ef30ce4c7dac363c609c0a53e 398 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 4 110 1.4E-34 T 23-04-2016 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RPE_RS21005 e146ab1ef30ce4c7dac363c609c0a53e 398 Gene3D G3DSA:3.30.300.10 256 397 2.0E-65 T 23-04-2016 RPE_RS21005 e146ab1ef30ce4c7dac363c609c0a53e 398 Gene3D G3DSA:3.30.300.10 148 245 2.6E-31 T 23-04-2016 RPE_RS21005 e146ab1ef30ce4c7dac363c609c0a53e 398 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 6 397 1.5E-143 T 23-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RPE_RS21005 e146ab1ef30ce4c7dac363c609c0a53e 398 SUPERFAMILY SSF55973 245 396 9.81E-64 T 23-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RPE_RS21005 e146ab1ef30ce4c7dac363c609c0a53e 398 SUPERFAMILY SSF55973 4 117 3.53E-34 T 23-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RPE_RS21005 e146ab1ef30ce4c7dac363c609c0a53e 398 PIRSF PIRSF000497 1 398 7.1E-155 T 23-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RPE_RS21005 e146ab1ef30ce4c7dac363c609c0a53e 398 PANTHER PTHR11964:SF1 1 393 3.6E-195 T 23-04-2016 RPE_RS06630 78fe8523487fc33605a82c324802062d 316 Pfam PF12697 Alpha/beta hydrolase family 52 301 2.5E-8 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS06630 78fe8523487fc33605a82c324802062d 316 SUPERFAMILY SSF53474 20 307 5.85E-27 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS06630 78fe8523487fc33605a82c324802062d 316 Gene3D G3DSA:3.40.50.1820 25 308 1.7E-26 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS06630 78fe8523487fc33605a82c324802062d 316 PANTHER PTHR10992 9 309 3.7E-13 T 23-04-2016 RPE_RS06845 336b515c359d6ea2d6ce46eee0be0995 403 PANTHER PTHR13693:SF57 2 399 1.9E-229 T 23-04-2016 RPE_RS06845 336b515c359d6ea2d6ce46eee0be0995 403 Gene3D G3DSA:3.90.1150.10 281 394 2.2E-30 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS06845 336b515c359d6ea2d6ce46eee0be0995 403 Pfam PF00155 Aminotransferase class I and II 46 390 7.2E-82 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RPE_RS06845 336b515c359d6ea2d6ce46eee0be0995 403 TIGRFAM TIGR01821 5aminolev_synth: 5-aminolevulinic acid synthase 1 401 2.3E-205 T 23-04-2016 IPR010961 Tetrapyrrole biosynthesis, 5-aminolevulinic acid synthase GO:0003870|GO:0030170|GO:0033014 KEGG: 00260+2.3.1.37|KEGG: 00860+2.3.1.37|MetaCyc: PWY-5189|MetaCyc: PWY-7536|Reactome: REACT_9431|UniPathway: UPA00251 RPE_RS06845 336b515c359d6ea2d6ce46eee0be0995 403 Gene3D G3DSA:3.40.640.10 64 280 3.8E-89 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS06845 336b515c359d6ea2d6ce46eee0be0995 403 SUPERFAMILY SSF53383 3 398 1.04E-114 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS06845 336b515c359d6ea2d6ce46eee0be0995 403 PANTHER PTHR13693 2 399 1.9E-229 T 23-04-2016 RPE_RS06845 336b515c359d6ea2d6ce46eee0be0995 403 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 244 253 - T 23-04-2016 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 RPE_RS19580 adb2dc1de8974df12d6a45182d6be476 535 PANTHER PTHR11552 2 535 1.1E-216 T 23-04-2016 RPE_RS19580 adb2dc1de8974df12d6a45182d6be476 535 Pfam PF05199 GMC oxidoreductase 388 524 8.4E-46 T 23-04-2016 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 RPE_RS19580 adb2dc1de8974df12d6a45182d6be476 535 PIRSF PIRSF000137 1 535 1.7E-156 T 23-04-2016 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|UniPathway: UPA00529 RPE_RS19580 adb2dc1de8974df12d6a45182d6be476 535 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 82 105 - T 23-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 RPE_RS19580 adb2dc1de8974df12d6a45182d6be476 535 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 255 269 - T 23-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 RPE_RS19580 adb2dc1de8974df12d6a45182d6be476 535 PANTHER PTHR11552:SF14 2 535 1.1E-216 T 23-04-2016 RPE_RS19580 adb2dc1de8974df12d6a45182d6be476 535 Pfam PF00732 GMC oxidoreductase 5 296 1.1E-92 T 23-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 RPE_RS19580 adb2dc1de8974df12d6a45182d6be476 535 SUPERFAMILY SSF51905 472 533 4.61E-93 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS19580 adb2dc1de8974df12d6a45182d6be476 535 SUPERFAMILY SSF51905 1 289 4.61E-93 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS19580 adb2dc1de8974df12d6a45182d6be476 535 Gene3D G3DSA:3.50.50.60 2 126 3.5E-126 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS19580 adb2dc1de8974df12d6a45182d6be476 535 Gene3D G3DSA:3.50.50.60 187 314 3.5E-126 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS19580 adb2dc1de8974df12d6a45182d6be476 535 Gene3D G3DSA:3.50.50.60 466 533 3.5E-126 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS19580 adb2dc1de8974df12d6a45182d6be476 535 SUPERFAMILY SSF54373 291 473 2.35E-54 T 23-04-2016 RPE_RS14000 a1990994c3011318d286177b3b348f7c 267 Pfam PF04367 Protein of unknown function (DUF502) 82 189 1.6E-31 T 23-04-2016 IPR007462 Protein of unknown function DUF502 RPE_RS14000 a1990994c3011318d286177b3b348f7c 267 PANTHER PTHR31876 23 247 7.4E-70 T 23-04-2016 RPE_RS14000 a1990994c3011318d286177b3b348f7c 267 PANTHER PTHR31876:SF1 23 247 7.4E-70 T 23-04-2016 RPE_RS09865 9acc0673c395bb08505ac4b67456ec42 219 SUPERFAMILY SSF46894 119 216 1.42E-24 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RPE_RS09865 9acc0673c395bb08505ac4b67456ec42 219 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 216 7.1E-20 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS09865 9acc0673c395bb08505ac4b67456ec42 219 Gene3D G3DSA:1.10.10.10 122 216 8.0E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS09865 9acc0673c395bb08505ac4b67456ec42 219 Pfam PF00072 Response regulator receiver domain 3 113 4.6E-22 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS09865 9acc0673c395bb08505ac4b67456ec42 219 SMART SM00862 145 216 3.0E-21 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS09865 9acc0673c395bb08505ac4b67456ec42 219 SUPERFAMILY SSF52172 1 118 6.4E-37 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS09865 9acc0673c395bb08505ac4b67456ec42 219 Gene3D G3DSA:3.40.50.2300 1 121 2.5E-35 T 23-04-2016 RPE_RS09865 9acc0673c395bb08505ac4b67456ec42 219 SMART SM00448 1 112 2.4E-36 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS09865 9acc0673c395bb08505ac4b67456ec42 219 PANTHER PTHR26402 1 217 4.7E-88 T 23-04-2016 RPE_RS09865 9acc0673c395bb08505ac4b67456ec42 219 PANTHER PTHR26402:SF279 1 217 4.7E-88 T 23-04-2016 RPE_RS17600 dcd0195c3c14a42a3466df684f734ee5 268 PANTHER PTHR26402 178 256 1.2E-19 T 23-04-2016 RPE_RS17600 dcd0195c3c14a42a3466df684f734ee5 268 PANTHER PTHR26402 6 138 1.2E-19 T 23-04-2016 RPE_RS17600 dcd0195c3c14a42a3466df684f734ee5 268 Pfam PF00196 Bacterial regulatory proteins, luxR family 199 253 1.9E-18 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS17600 dcd0195c3c14a42a3466df684f734ee5 268 ProSitePatterns PS00622 LuxR-type HTH domain signature. 213 240 - T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS17600 dcd0195c3c14a42a3466df684f734ee5 268 Gene3D G3DSA:1.10.10.10 186 256 5.1E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS17600 dcd0195c3c14a42a3466df684f734ee5 268 SMART SM00421 196 253 4.4E-22 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS17600 dcd0195c3c14a42a3466df684f734ee5 268 SUPERFAMILY SSF52172 5 125 9.95E-10 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS17600 dcd0195c3c14a42a3466df684f734ee5 268 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 213 229 2.1E-10 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS17600 dcd0195c3c14a42a3466df684f734ee5 268 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 229 241 2.1E-10 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS17600 dcd0195c3c14a42a3466df684f734ee5 268 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 199 213 2.1E-10 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS17600 dcd0195c3c14a42a3466df684f734ee5 268 PANTHER PTHR26402:SF458 178 256 1.2E-19 T 23-04-2016 RPE_RS17600 dcd0195c3c14a42a3466df684f734ee5 268 PANTHER PTHR26402:SF458 6 138 1.2E-19 T 23-04-2016 RPE_RS17600 dcd0195c3c14a42a3466df684f734ee5 268 SUPERFAMILY SSF46894 190 256 3.74E-18 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RPE_RS17600 dcd0195c3c14a42a3466df684f734ee5 268 Gene3D G3DSA:3.40.50.2300 5 121 4.7E-4 T 23-04-2016 RPE_RS09260 1202f022ef9cf306c403cd8546b1f636 378 PANTHER PTHR10799 133 378 1.8E-24 T 23-04-2016 RPE_RS09260 1202f022ef9cf306c403cd8546b1f636 378 Pfam PF00990 Diguanylate cyclase, GGDEF domain 222 378 9.8E-40 T 23-04-2016 IPR000160 GGDEF domain RPE_RS09260 1202f022ef9cf306c403cd8546b1f636 378 SUPERFAMILY SSF55073 227 378 5.34E-44 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS09260 1202f022ef9cf306c403cd8546b1f636 378 SMART SM00267 211 378 4.4E-45 T 23-04-2016 IPR000160 GGDEF domain RPE_RS09260 1202f022ef9cf306c403cd8546b1f636 378 Gene3D G3DSA:3.30.70.270 224 378 6.0E-45 T 23-04-2016 RPE_RS09260 1202f022ef9cf306c403cd8546b1f636 378 PANTHER PTHR10799:SF750 133 378 1.8E-24 T 23-04-2016 RPE_RS09260 1202f022ef9cf306c403cd8546b1f636 378 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 219 378 1.9E-44 T 23-04-2016 IPR000160 GGDEF domain RPE_RS23040 0d8338c5f053d8d83e8646c218dd1324 427 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 101 292 3.1E-77 T 23-04-2016 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RPE_RS23040 0d8338c5f053d8d83e8646c218dd1324 427 SUPERFAMILY SSF51246 326 420 2.56E-30 T 23-04-2016 IPR011054 Rudiment single hybrid motif RPE_RS23040 0d8338c5f053d8d83e8646c218dd1324 427 SMART SM01210 326 420 1.2E-53 T 23-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RPE_RS23040 0d8338c5f053d8d83e8646c218dd1324 427 SUPERFAMILY SSF52440 2 101 1.27E-35 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RPE_RS23040 0d8338c5f053d8d83e8646c218dd1324 427 Gene3D G3DSA:3.40.50.20 2 93 8.8E-38 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RPE_RS23040 0d8338c5f053d8d83e8646c218dd1324 427 Gene3D G3DSA:3.30.470.20 188 324 2.9E-62 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RPE_RS23040 0d8338c5f053d8d83e8646c218dd1324 427 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 286 293 - T 23-04-2016 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RPE_RS23040 0d8338c5f053d8d83e8646c218dd1324 427 Gene3D G3DSA:3.90.600.10 327 420 2.4E-35 T 23-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RPE_RS23040 0d8338c5f053d8d83e8646c218dd1324 427 SMART SM01209 101 292 2.4E-136 T 23-04-2016 RPE_RS23040 0d8338c5f053d8d83e8646c218dd1324 427 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 327 417 4.4E-28 T 23-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RPE_RS23040 0d8338c5f053d8d83e8646c218dd1324 427 SUPERFAMILY SSF56059 102 319 6.88E-64 T 23-04-2016 RPE_RS23040 0d8338c5f053d8d83e8646c218dd1324 427 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 420 42.958 T 23-04-2016 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RPE_RS23040 0d8338c5f053d8d83e8646c218dd1324 427 Gene3D G3DSA:3.30.1490.20 120 187 6.5E-30 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RPE_RS23040 0d8338c5f053d8d83e8646c218dd1324 427 PANTHER PTHR10520 1 425 2.2E-270 T 23-04-2016 RPE_RS23040 0d8338c5f053d8d83e8646c218dd1324 427 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 2 420 3.3E-164 T 23-04-2016 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RPE_RS23040 0d8338c5f053d8d83e8646c218dd1324 427 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 2 100 1.6E-34 T 23-04-2016 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RPE_RS06920 4175e620d7d63cd632a43dc97f3f79a9 1045 PANTHER PTHR32063:SF18 4 1019 0.0 T 23-04-2016 RPE_RS06920 4175e620d7d63cd632a43dc97f3f79a9 1045 SUPERFAMILY SSF82714 188 267 2.62E-10 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS06920 4175e620d7d63cd632a43dc97f3f79a9 1045 Gene3D G3DSA:1.10.3850.10 801 1014 8.7E-51 T 23-04-2016 RPE_RS06920 4175e620d7d63cd632a43dc97f3f79a9 1045 Pfam PF00873 AcrB/AcrD/AcrF family 8 1010 1.3E-161 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS06920 4175e620d7d63cd632a43dc97f3f79a9 1045 Gene3D G3DSA:3.30.70.1430 43 146 4.5E-19 T 23-04-2016 RPE_RS06920 4175e620d7d63cd632a43dc97f3f79a9 1045 SUPERFAMILY SSF82866 293 491 1.2E-34 T 23-04-2016 RPE_RS06920 4175e620d7d63cd632a43dc97f3f79a9 1045 PANTHER PTHR32063 4 1019 0.0 T 23-04-2016 RPE_RS06920 4175e620d7d63cd632a43dc97f3f79a9 1045 PRINTS PR00702 Acriflavin resistance protein family signature 387 411 3.0E-22 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS06920 4175e620d7d63cd632a43dc97f3f79a9 1045 PRINTS PR00702 Acriflavin resistance protein family signature 440 463 3.0E-22 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS06920 4175e620d7d63cd632a43dc97f3f79a9 1045 PRINTS PR00702 Acriflavin resistance protein family signature 465 488 3.0E-22 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS06920 4175e620d7d63cd632a43dc97f3f79a9 1045 PRINTS PR00702 Acriflavin resistance protein family signature 41 59 3.0E-22 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS06920 4175e620d7d63cd632a43dc97f3f79a9 1045 PRINTS PR00702 Acriflavin resistance protein family signature 333 356 3.0E-22 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS06920 4175e620d7d63cd632a43dc97f3f79a9 1045 SUPERFAMILY SSF82693 43 137 5.23E-17 T 23-04-2016 RPE_RS06920 4175e620d7d63cd632a43dc97f3f79a9 1045 SUPERFAMILY SSF82714 709 794 1.26E-15 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS06920 4175e620d7d63cd632a43dc97f3f79a9 1045 SUPERFAMILY SSF82693 271 326 6.28E-17 T 23-04-2016 RPE_RS06920 4175e620d7d63cd632a43dc97f3f79a9 1045 SUPERFAMILY SSF82693 141 185 6.28E-17 T 23-04-2016 RPE_RS06920 4175e620d7d63cd632a43dc97f3f79a9 1045 SUPERFAMILY SSF82866 792 1015 7.72E-44 T 23-04-2016 RPE_RS06920 4175e620d7d63cd632a43dc97f3f79a9 1045 Gene3D G3DSA:3.30.2090.10 708 794 2.6E-16 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS06920 4175e620d7d63cd632a43dc97f3f79a9 1045 Gene3D G3DSA:3.30.2090.10 188 268 2.2E-10 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS06920 4175e620d7d63cd632a43dc97f3f79a9 1045 Gene3D G3DSA:1.20.1640.10 290 493 2.7E-42 T 23-04-2016 RPE_RS13570 85c32ed76bdb3215de43cdd87c255a46 215 PANTHER PTHR11579 10 206 8.6E-65 T 23-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 RPE_RS13570 85c32ed76bdb3215de43cdd87c255a46 215 Gene3D G3DSA:3.40.50.150 16 210 4.1E-55 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS13570 85c32ed76bdb3215de43cdd87c255a46 215 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 15 207 7.9E-52 T 23-04-2016 RPE_RS13570 85c32ed76bdb3215de43cdd87c255a46 215 SUPERFAMILY SSF53335 9 210 1.44E-44 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS13570 85c32ed76bdb3215de43cdd87c255a46 215 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 4 213 33.01 T 23-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 RPE_RS13570 85c32ed76bdb3215de43cdd87c255a46 215 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 16 207 2.9E-55 T 23-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 RPE_RS06720 2afa6aa1e60081f24344443aac2561af 306 Pfam PF00124 Photosynthetic reaction centre protein 50 302 6.3E-101 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RPE_RS06720 2afa6aa1e60081f24344443aac2561af 306 TIGRFAM TIGR01115 pufM: photosynthetic reaction center M subunit 2 304 2.0E-158 T 23-04-2016 IPR005781 Photosynthetic reaction centre, M subunit GO:0019684|GO:0030077|GO:0045156 RPE_RS06720 2afa6aa1e60081f24344443aac2561af 306 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 54 75 1.5E-47 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RPE_RS06720 2afa6aa1e60081f24344443aac2561af 306 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 111 139 1.5E-47 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RPE_RS06720 2afa6aa1e60081f24344443aac2561af 306 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 260 285 1.5E-47 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RPE_RS06720 2afa6aa1e60081f24344443aac2561af 306 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 144 166 1.5E-47 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RPE_RS06720 2afa6aa1e60081f24344443aac2561af 306 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 200 226 1.5E-47 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RPE_RS06720 2afa6aa1e60081f24344443aac2561af 306 PANTHER PTHR33149:SF2 47 222 2.0E-33 T 23-04-2016 RPE_RS06720 2afa6aa1e60081f24344443aac2561af 306 PANTHER PTHR33149 47 222 2.0E-33 T 23-04-2016 RPE_RS06720 2afa6aa1e60081f24344443aac2561af 306 Gene3D G3DSA:1.20.85.10 2 142 1.3E-62 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RPE_RS06720 2afa6aa1e60081f24344443aac2561af 306 SUPERFAMILY SSF81483 1 304 9.68E-127 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RPE_RS06720 2afa6aa1e60081f24344443aac2561af 306 Gene3D G3DSA:1.20.85.10 143 297 1.7E-59 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RPE_RS17040 f3be7d8970f09554f5ef52f74a822275 376 Pfam PF00155 Aminotransferase class I and II 26 368 8.8E-48 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RPE_RS17040 f3be7d8970f09554f5ef52f74a822275 376 PANTHER PTHR13693 3 368 1.3E-129 T 23-04-2016 RPE_RS17040 f3be7d8970f09554f5ef52f74a822275 376 Gene3D G3DSA:3.40.640.10 44 259 4.6E-76 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS17040 f3be7d8970f09554f5ef52f74a822275 376 Gene3D G3DSA:3.90.1150.10 260 367 4.9E-23 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS17040 f3be7d8970f09554f5ef52f74a822275 376 PANTHER PTHR13693:SF53 3 368 1.3E-129 T 23-04-2016 RPE_RS17040 f3be7d8970f09554f5ef52f74a822275 376 SUPERFAMILY SSF53383 9 372 1.34E-92 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS03695 9f663b016fb4db279e735fd50dc8c19b 646 PANTHER PTHR10587 200 401 2.3E-34 T 23-04-2016 RPE_RS03695 9f663b016fb4db279e735fd50dc8c19b 646 Pfam PF13641 Glycosyltransferase like family 2 256 482 1.4E-29 T 23-04-2016 RPE_RS03695 9f663b016fb4db279e735fd50dc8c19b 646 PANTHER PTHR10587:SF79 200 401 2.3E-34 T 23-04-2016 RPE_RS03695 9f663b016fb4db279e735fd50dc8c19b 646 SUPERFAMILY SSF53448 259 497 1.31E-40 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS03695 9f663b016fb4db279e735fd50dc8c19b 646 Gene3D G3DSA:3.90.550.10 258 495 1.1E-15 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS03515 7f9061b2f7c4b564a5273982c7c1afe9 143 Gene3D G3DSA:3.10.180.10 1 123 4.6E-35 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RPE_RS03515 7f9061b2f7c4b564a5273982c7c1afe9 143 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 120 3.3E-8 T 23-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RPE_RS03515 7f9061b2f7c4b564a5273982c7c1afe9 143 SUPERFAMILY SSF54593 6 123 7.38E-26 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RPE_RS23130 67da28adf114f59ee6697c414d0a8b9a 234 SMART SM00419 175 223 8.2E-8 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RPE_RS23130 67da28adf114f59ee6697c414d0a8b9a 234 SUPERFAMILY SSF51206 18 157 2.09E-36 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like RPE_RS23130 67da28adf114f59ee6697c414d0a8b9a 234 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 92 109 - T 23-04-2016 IPR018488 Cyclic nucleotide-binding, conserved site RPE_RS23130 67da28adf114f59ee6697c414d0a8b9a 234 Gene3D G3DSA:1.10.10.10 159 231 7.1E-18 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS23130 67da28adf114f59ee6697c414d0a8b9a 234 SMART SM00100 24 142 2.0E-19 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RPE_RS23130 67da28adf114f59ee6697c414d0a8b9a 234 PANTHER PTHR24567 11 230 2.2E-66 T 23-04-2016 RPE_RS23130 67da28adf114f59ee6697c414d0a8b9a 234 PANTHER PTHR24567:SF36 11 230 2.2E-66 T 23-04-2016 RPE_RS23130 67da28adf114f59ee6697c414d0a8b9a 234 Gene3D G3DSA:2.60.120.10 17 158 3.3E-37 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS23130 67da28adf114f59ee6697c414d0a8b9a 234 Pfam PF13545 Crp-like helix-turn-helix domain 162 230 2.2E-15 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RPE_RS23130 67da28adf114f59ee6697c414d0a8b9a 234 SUPERFAMILY SSF46785 159 230 4.88E-14 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS23130 67da28adf114f59ee6697c414d0a8b9a 234 Pfam PF00027 Cyclic nucleotide-binding domain 44 130 3.0E-21 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RPE_RS06250 04b6e7374d4e1e68f75584d4dc05e3ff 99 Pfam PF01455 HupF/HypC family 1 65 2.7E-17 T 23-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RPE_RS06250 04b6e7374d4e1e68f75584d4dc05e3ff 99 SUPERFAMILY SSF159127 1 82 4.45E-19 T 23-04-2016 RPE_RS06250 04b6e7374d4e1e68f75584d4dc05e3ff 99 PANTHER PTHR35177:SF2 1 88 8.2E-23 T 23-04-2016 RPE_RS06250 04b6e7374d4e1e68f75584d4dc05e3ff 99 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 38 54 3.3E-11 T 23-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RPE_RS06250 04b6e7374d4e1e68f75584d4dc05e3ff 99 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 3.3E-11 T 23-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RPE_RS06250 04b6e7374d4e1e68f75584d4dc05e3ff 99 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 17 33 3.3E-11 T 23-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RPE_RS06250 04b6e7374d4e1e68f75584d4dc05e3ff 99 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 56 68 3.3E-11 T 23-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RPE_RS06250 04b6e7374d4e1e68f75584d4dc05e3ff 99 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 1 74 3.3E-20 T 23-04-2016 IPR001109 Hydrogenase expression/formation protein, HupF/HypC RPE_RS06250 04b6e7374d4e1e68f75584d4dc05e3ff 99 PANTHER PTHR35177 1 88 8.2E-23 T 23-04-2016 RPE_RS18205 829be921915d0137e9592b911b37f5e3 531 SUPERFAMILY SSF50341 32 172 4.32E-26 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS18205 829be921915d0137e9592b911b37f5e3 531 Gene3D G3DSA:2.40.50.180 413 458 3.9E-10 T 23-04-2016 RPE_RS18205 829be921915d0137e9592b911b37f5e3 531 Gene3D G3DSA:2.40.50.180 76 112 4.5E-7 T 23-04-2016 RPE_RS18205 829be921915d0137e9592b911b37f5e3 531 Gene3D G3DSA:2.40.50.180 245 290 1.4E-9 T 23-04-2016 RPE_RS18205 829be921915d0137e9592b911b37f5e3 531 SUPERFAMILY SSF50341 204 347 3.27E-26 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS18205 829be921915d0137e9592b911b37f5e3 531 SUPERFAMILY SSF50341 369 512 2.62E-34 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS18205 829be921915d0137e9592b911b37f5e3 531 Pfam PF01584 CheW-like domain 206 345 1.0E-26 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS18205 829be921915d0137e9592b911b37f5e3 531 Pfam PF01584 CheW-like domain 374 512 5.6E-35 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS18205 829be921915d0137e9592b911b37f5e3 531 Pfam PF01584 CheW-like domain 36 171 6.8E-26 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS18205 829be921915d0137e9592b911b37f5e3 531 PANTHER PTHR22617 368 524 9.2E-39 T 23-04-2016 RPE_RS18205 829be921915d0137e9592b911b37f5e3 531 SMART SM00260 31 169 1.3E-14 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS18205 829be921915d0137e9592b911b37f5e3 531 SMART SM00260 201 343 5.7E-24 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS18205 829be921915d0137e9592b911b37f5e3 531 SMART SM00260 369 508 8.9E-34 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS16580 52f96aee4027064c8111948ccaa790f6 79 Pfam PF00550 Phosphopantetheine attachment site 6 72 1.4E-13 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain RPE_RS16580 52f96aee4027064c8111948ccaa790f6 79 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 1 76 1.5E-32 T 23-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 RPE_RS16580 52f96aee4027064c8111948ccaa790f6 79 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 23-04-2016 IPR006162 Phosphopantetheine attachment site RPE_RS16580 52f96aee4027064c8111948ccaa790f6 79 Gene3D G3DSA:1.10.1200.10 3 76 3.0E-32 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain RPE_RS16580 52f96aee4027064c8111948ccaa790f6 79 SMART SM00823 Phosphopantetheine attachment site 5 63 0.0042 T 23-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 RPE_RS16580 52f96aee4027064c8111948ccaa790f6 79 SUPERFAMILY SSF47336 2 76 4.71E-22 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain RPE_RS16580 52f96aee4027064c8111948ccaa790f6 79 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 41 76 1.0E-13 T 23-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 RPE_RS16580 52f96aee4027064c8111948ccaa790f6 79 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 21.725 T 23-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 RPE_RS16580 52f96aee4027064c8111948ccaa790f6 79 PANTHER PTHR20863 3 76 3.3E-27 T 23-04-2016 RPE_RS01275 fba91841a7e27ddd8055fba161f5c8e0 730 PRINTS PR00458 Haem peroxidase superfamily signature 310 325 3.5E-18 T 23-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RPE_RS01275 fba91841a7e27ddd8055fba161f5c8e0 730 PRINTS PR00458 Haem peroxidase superfamily signature 88 102 3.5E-18 T 23-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RPE_RS01275 fba91841a7e27ddd8055fba161f5c8e0 730 PRINTS PR00458 Haem peroxidase superfamily signature 166 178 3.5E-18 T 23-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RPE_RS01275 fba91841a7e27ddd8055fba161f5c8e0 730 PRINTS PR00458 Haem peroxidase superfamily signature 251 266 3.5E-18 T 23-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RPE_RS01275 fba91841a7e27ddd8055fba161f5c8e0 730 PRINTS PR00458 Haem peroxidase superfamily signature 148 165 3.5E-18 T 23-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RPE_RS01275 fba91841a7e27ddd8055fba161f5c8e0 730 Gene3D G3DSA:1.10.420.10 302 399 2.7E-43 T 23-04-2016 RPE_RS01275 fba91841a7e27ddd8055fba161f5c8e0 730 Gene3D G3DSA:1.10.420.10 243 266 2.7E-43 T 23-04-2016 RPE_RS01275 fba91841a7e27ddd8055fba161f5c8e0 730 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 24 46 2.1E-54 T 23-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 RPE_RS01275 fba91841a7e27ddd8055fba161f5c8e0 730 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 50 63 2.1E-54 T 23-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 RPE_RS01275 fba91841a7e27ddd8055fba161f5c8e0 730 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 65 90 2.1E-54 T 23-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 RPE_RS01275 fba91841a7e27ddd8055fba161f5c8e0 730 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 472 498 2.1E-54 T 23-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 RPE_RS01275 fba91841a7e27ddd8055fba161f5c8e0 730 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 259 282 2.1E-54 T 23-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 RPE_RS01275 fba91841a7e27ddd8055fba161f5c8e0 730 Pfam PF00141 Peroxidase 74 387 6.4E-48 T 23-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RPE_RS01275 fba91841a7e27ddd8055fba161f5c8e0 730 Pfam PF00141 Peroxidase 394 702 6.1E-38 T 23-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RPE_RS01275 fba91841a7e27ddd8055fba161f5c8e0 730 ProSitePatterns PS00436 Peroxidases active site signature. 88 99 - T 23-04-2016 IPR019794 Peroxidase, active site GO:0004601|GO:0055114 RPE_RS01275 fba91841a7e27ddd8055fba161f5c8e0 730 Gene3D G3DSA:1.10.520.10 219 242 8.9E-73 T 23-04-2016 RPE_RS01275 fba91841a7e27ddd8055fba161f5c8e0 730 Gene3D G3DSA:1.10.520.10 45 187 8.9E-73 T 23-04-2016 RPE_RS01275 fba91841a7e27ddd8055fba161f5c8e0 730 TIGRFAM TIGR00198 cat_per_HPI: catalase/peroxidase HPI 12 730 0.0 T 23-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 RPE_RS01275 fba91841a7e27ddd8055fba161f5c8e0 730 SUPERFAMILY SSF48113 422 728 1.13E-112 T 23-04-2016 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 RPE_RS01275 fba91841a7e27ddd8055fba161f5c8e0 730 ProSitePatterns PS00435 Peroxidases proximal heme-ligand signature. 251 261 - T 23-04-2016 IPR019793 Peroxidases heam-ligand binding site RPE_RS01275 fba91841a7e27ddd8055fba161f5c8e0 730 PANTHER PTHR30555:SF0 1 728 0.0 T 23-04-2016 RPE_RS01275 fba91841a7e27ddd8055fba161f5c8e0 730 PANTHER PTHR30555 1 728 0.0 T 23-04-2016 RPE_RS01275 fba91841a7e27ddd8055fba161f5c8e0 730 Gene3D G3DSA:1.10.420.10 587 703 1.9E-44 T 23-04-2016 RPE_RS01275 fba91841a7e27ddd8055fba161f5c8e0 730 Gene3D G3DSA:1.10.520.10 424 586 2.8E-58 T 23-04-2016 RPE_RS01275 fba91841a7e27ddd8055fba161f5c8e0 730 SUPERFAMILY SSF48113 18 422 7.96E-152 T 23-04-2016 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 RPE_RS01275 fba91841a7e27ddd8055fba161f5c8e0 730 Hamap MF_01961 Catalase-peroxidase [katG]. 8 729 41.967 T 23-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 RPE_RS05975 1aa512ad2231e01cdf44eb6f96962cfe 695 PIRSF PIRSF005419 9 695 7.3E-220 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RPE_RS05975 1aa512ad2231e01cdf44eb6f96962cfe 695 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 17 694 1.4E-265 T 23-04-2016 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 RPE_RS05975 1aa512ad2231e01cdf44eb6f96962cfe 695 PANTHER PTHR30161:SF1 1 695 4.1E-267 T 23-04-2016 RPE_RS05975 1aa512ad2231e01cdf44eb6f96962cfe 695 Pfam PF00771 FHIPEP family 28 686 1.3E-239 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RPE_RS05975 1aa512ad2231e01cdf44eb6f96962cfe 695 PANTHER PTHR30161 1 695 4.1E-267 T 23-04-2016 RPE_RS05975 1aa512ad2231e01cdf44eb6f96962cfe 695 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 239 253 5.3E-51 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RPE_RS05975 1aa512ad2231e01cdf44eb6f96962cfe 695 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 158 176 5.3E-51 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RPE_RS05975 1aa512ad2231e01cdf44eb6f96962cfe 695 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 35 48 5.3E-51 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RPE_RS05975 1aa512ad2231e01cdf44eb6f96962cfe 695 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 72 91 5.3E-51 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RPE_RS05975 1aa512ad2231e01cdf44eb6f96962cfe 695 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 188 205 5.3E-51 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RPE_RS05975 1aa512ad2231e01cdf44eb6f96962cfe 695 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 139 155 5.3E-51 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RPE_RS19860 ec7f980a7c48e169ca6d142c83988f7d 615 PANTHER PTHR24221:SF157 9 63 1.8E-180 T 23-04-2016 RPE_RS19860 ec7f980a7c48e169ca6d142c83988f7d 615 PANTHER PTHR24221:SF157 86 615 1.8E-180 T 23-04-2016 RPE_RS19860 ec7f980a7c48e169ca6d142c83988f7d 615 Gene3D G3DSA:3.40.50.300 371 603 1.8E-71 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS19860 ec7f980a7c48e169ca6d142c83988f7d 615 Pfam PF00664 ABC transporter transmembrane region 113 315 3.9E-5 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RPE_RS19860 ec7f980a7c48e169ca6d142c83988f7d 615 SMART SM00382 395 586 2.0E-18 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS19860 ec7f980a7c48e169ca6d142c83988f7d 615 Gene3D G3DSA:1.20.1560.10 31 356 2.2E-18 T 23-04-2016 RPE_RS19860 ec7f980a7c48e169ca6d142c83988f7d 615 SUPERFAMILY SSF90123 20 338 3.27E-25 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RPE_RS19860 ec7f980a7c48e169ca6d142c83988f7d 615 Pfam PF00005 ABC transporter 387 540 1.1E-35 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS19860 ec7f980a7c48e169ca6d142c83988f7d 615 PANTHER PTHR24221 9 63 1.8E-180 T 23-04-2016 RPE_RS19860 ec7f980a7c48e169ca6d142c83988f7d 615 PANTHER PTHR24221 86 615 1.8E-180 T 23-04-2016 RPE_RS19860 ec7f980a7c48e169ca6d142c83988f7d 615 ProSitePatterns PS00211 ABC transporters family signature. 512 526 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS19860 ec7f980a7c48e169ca6d142c83988f7d 615 SUPERFAMILY SSF52540 359 610 7.42E-76 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS22720 150ef60ecf453276724abec369ab8fe8 662 SMART SM00044 371 599 5.1E-19 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RPE_RS22720 150ef60ecf453276724abec369ab8fe8 662 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 432 615 8.2E-31 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RPE_RS22720 150ef60ecf453276724abec369ab8fe8 662 SUPERFAMILY SSF103190 244 296 2.51E-6 T 23-04-2016 IPR029151 Periplasmic sensor domain-like RPE_RS22720 150ef60ecf453276724abec369ab8fe8 662 SUPERFAMILY SSF103190 78 131 2.51E-6 T 23-04-2016 IPR029151 Periplasmic sensor domain-like RPE_RS22720 150ef60ecf453276724abec369ab8fe8 662 SUPERFAMILY SSF55073 429 618 2.83E-56 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS22720 150ef60ecf453276724abec369ab8fe8 662 PANTHER PTHR11920 364 637 3.7E-79 T 23-04-2016 RPE_RS22720 150ef60ecf453276724abec369ab8fe8 662 SMART SM00304 325 380 1.3E-7 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS22720 150ef60ecf453276724abec369ab8fe8 662 Gene3D G3DSA:3.30.70.1230 430 618 3.9E-48 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RPE_RS22720 150ef60ecf453276724abec369ab8fe8 662 PANTHER PTHR11920:SF341 364 637 3.7E-79 T 23-04-2016 RPE_RS22720 150ef60ecf453276724abec369ab8fe8 662 Pfam PF00672 HAMP domain 307 375 8.9E-11 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS23865 6815765da06f08ea522438644eca2d6f 164 Hamap MF_01398 ATP synthase subunit b [atpF]. 5 159 11.493 T 23-04-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 RPE_RS23865 6815765da06f08ea522438644eca2d6f 164 Pfam PF00430 ATP synthase B/B' CF(0) 11 139 7.9E-26 T 23-04-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 RPE_RS12730 6b38e0b46030ada90b5a9ce40d075456 270 Gene3D G3DSA:3.30.930.10 9 213 1.4E-51 T 23-04-2016 RPE_RS12730 6b38e0b46030ada90b5a9ce40d075456 270 PANTHER PTHR12835 15 259 1.2E-49 T 23-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 RPE_RS12730 6b38e0b46030ada90b5a9ce40d075456 270 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 16 259 1.6E-34 T 23-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 RPE_RS12730 6b38e0b46030ada90b5a9ce40d075456 270 SUPERFAMILY SSF55681 11 213 1.66E-45 T 23-04-2016 RPE_RS12730 6b38e0b46030ada90b5a9ce40d075456 270 Gene3D G3DSA:2.30.30.100 216 259 1.4E-6 T 23-04-2016 RPE_RS12730 6b38e0b46030ada90b5a9ce40d075456 270 SUPERFAMILY SSF50037 218 261 3.89E-7 T 23-04-2016 IPR008988 Transcriptional repressor, C-terminal RPE_RS12730 6b38e0b46030ada90b5a9ce40d075456 270 Pfam PF03099 Biotin/lipoate A/B protein ligase family 44 154 2.9E-10 T 23-04-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 RPE_RS01665 67329374ec476384818f8ea490d91dd4 470 ProSitePatterns PS00450 Aconitase family signature 1. 343 359 - T 23-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01665 67329374ec476384818f8ea490d91dd4 470 PANTHER PTHR11670:SF38 1 311 0.0 T 23-04-2016 RPE_RS01665 67329374ec476384818f8ea490d91dd4 470 PANTHER PTHR11670:SF38 331 470 0.0 T 23-04-2016 RPE_RS01665 67329374ec476384818f8ea490d91dd4 470 Gene3D G3DSA:3.30.499.10 3 162 1.3E-25 T 23-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01665 67329374ec476384818f8ea490d91dd4 470 Gene3D G3DSA:3.30.499.10 297 307 1.8E-63 T 23-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01665 67329374ec476384818f8ea490d91dd4 470 Gene3D G3DSA:3.30.499.10 339 469 1.8E-63 T 23-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01665 67329374ec476384818f8ea490d91dd4 470 SUPERFAMILY SSF53732 5 469 1.31E-164 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01665 67329374ec476384818f8ea490d91dd4 470 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 5 470 60.414 T 23-04-2016 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01665 67329374ec476384818f8ea490d91dd4 470 ProSitePatterns PS01244 Aconitase family signature 2. 403 416 - T 23-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01665 67329374ec476384818f8ea490d91dd4 470 PRINTS PR00415 Aconitase family signature 290 304 4.8E-48 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01665 67329374ec476384818f8ea490d91dd4 470 PRINTS PR00415 Aconitase family signature 112 120 4.8E-48 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01665 67329374ec476384818f8ea490d91dd4 470 PRINTS PR00415 Aconitase family signature 199 212 4.8E-48 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01665 67329374ec476384818f8ea490d91dd4 470 PRINTS PR00415 Aconitase family signature 86 99 4.8E-48 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01665 67329374ec476384818f8ea490d91dd4 470 PRINTS PR00415 Aconitase family signature 123 136 4.8E-48 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01665 67329374ec476384818f8ea490d91dd4 470 PRINTS PR00415 Aconitase family signature 213 226 4.8E-48 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01665 67329374ec476384818f8ea490d91dd4 470 PRINTS PR00415 Aconitase family signature 137 152 4.8E-48 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01665 67329374ec476384818f8ea490d91dd4 470 PRINTS PR00415 Aconitase family signature 347 358 4.8E-48 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01665 67329374ec476384818f8ea490d91dd4 470 PRINTS PR00415 Aconitase family signature 403 416 4.8E-48 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01665 67329374ec476384818f8ea490d91dd4 470 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 6 468 5.4E-240 T 23-04-2016 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01665 67329374ec476384818f8ea490d91dd4 470 PANTHER PTHR11670 1 311 0.0 T 23-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01665 67329374ec476384818f8ea490d91dd4 470 PANTHER PTHR11670 331 470 0.0 T 23-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01665 67329374ec476384818f8ea490d91dd4 470 Pfam PF00330 Aconitase family (aconitate hydratase) 11 461 1.7E-155 T 23-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01665 67329374ec476384818f8ea490d91dd4 470 Gene3D G3DSA:3.40.1060.10 170 285 9.4E-41 T 23-04-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS06025 44dd798c2c247203a30323a3bd9bab28 733 PANTHER PTHR10569:SF1 358 675 1.3E-182 T 23-04-2016 RPE_RS06025 44dd798c2c247203a30323a3bd9bab28 733 PANTHER PTHR10569:SF1 265 338 1.3E-182 T 23-04-2016 RPE_RS06025 44dd798c2c247203a30323a3bd9bab28 733 Pfam PF06202 Amylo-alpha-1,6-glucosidase 290 657 4.2E-7 T 23-04-2016 IPR032790 Glycogen debranching enzyme, C-terminal KEGG: 00500+2.4.1.25+3.2.1.33|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 RPE_RS06025 44dd798c2c247203a30323a3bd9bab28 733 PANTHER PTHR10569 358 675 1.3E-182 T 23-04-2016 IPR010401 Glycogen debranching enzyme GO:0004134|GO:0004135|GO:0005980 KEGG: 00500+3.2.1.33+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 RPE_RS06025 44dd798c2c247203a30323a3bd9bab28 733 PANTHER PTHR10569 265 338 1.3E-182 T 23-04-2016 IPR010401 Glycogen debranching enzyme GO:0004134|GO:0004135|GO:0005980 KEGG: 00500+3.2.1.33+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 RPE_RS06025 44dd798c2c247203a30323a3bd9bab28 733 SUPERFAMILY SSF48208 247 713 2.93E-88 T 23-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 RPE_RS06025 44dd798c2c247203a30323a3bd9bab28 733 Pfam PF14742 N-terminal domain of (some) glycogen debranching enzymes 38 231 1.8E-52 T 23-04-2016 IPR032856 Putative glycogen debranching enzyme, N-terminal RPE_RS12455 1992ada53f762c02bbde217f9cd69f75 590 Pfam PF01434 Peptidase family M41 393 575 7.0E-13 T 23-04-2016 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 RPE_RS12455 1992ada53f762c02bbde217f9cd69f75 590 SMART SM00382 185 324 1.5E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS12455 1992ada53f762c02bbde217f9cd69f75 590 SUPERFAMILY SSF140990 393 579 1.44E-26 T 23-04-2016 RPE_RS12455 1992ada53f762c02bbde217f9cd69f75 590 PANTHER PTHR23076 239 588 2.3E-34 T 23-04-2016 RPE_RS12455 1992ada53f762c02bbde217f9cd69f75 590 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 190 321 4.0E-28 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RPE_RS12455 1992ada53f762c02bbde217f9cd69f75 590 ProSitePatterns PS00674 AAA-protein family signature. 292 310 - T 23-04-2016 IPR003960 ATPase, AAA-type, conserved site GO:0005524 RPE_RS12455 1992ada53f762c02bbde217f9cd69f75 590 Gene3D G3DSA:3.40.50.300 186 340 5.7E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12455 1992ada53f762c02bbde217f9cd69f75 590 SUPERFAMILY SSF52540 186 379 9.72E-38 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18985 bb3554682e65969ae6a6bd54d528c95a 589 Pfam PF02653 Branched-chain amino acid transport system / permease component 33 298 3.0E-36 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RPE_RS18985 bb3554682e65969ae6a6bd54d528c95a 589 SMART SM00382 366 564 6.5E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS18985 bb3554682e65969ae6a6bd54d528c95a 589 Pfam PF00005 ABC transporter 357 515 3.1E-29 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS18985 bb3554682e65969ae6a6bd54d528c95a 589 PANTHER PTHR24220:SF525 343 586 7.9E-115 T 23-04-2016 RPE_RS18985 bb3554682e65969ae6a6bd54d528c95a 589 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 565 586 1.6E-10 T 23-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RPE_RS18985 bb3554682e65969ae6a6bd54d528c95a 589 SUPERFAMILY SSF52540 340 585 2.66E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18985 bb3554682e65969ae6a6bd54d528c95a 589 Gene3D G3DSA:3.40.50.300 339 584 1.7E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18985 bb3554682e65969ae6a6bd54d528c95a 589 PANTHER PTHR24220 343 586 7.9E-115 T 23-04-2016 RPE_RS19880 847ed68af60104ab49c51b81330c0c23 204 PANTHER PTHR31793:SF9 43 192 2.6E-42 T 23-04-2016 RPE_RS19880 847ed68af60104ab49c51b81330c0c23 204 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 49 175 3.4E-44 T 23-04-2016 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 KEGG: 00360+3.1.2.-|KEGG: 00362+3.1.2.-|KEGG: 00592+3.1.2.-|KEGG: 00903+3.1.2.- RPE_RS19880 847ed68af60104ab49c51b81330c0c23 204 ProSitePatterns PS01328 4-hydroxybenzoyl-CoA thioesterase family active site. 54 71 - T 23-04-2016 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site GO:0016787 RPE_RS19880 847ed68af60104ab49c51b81330c0c23 204 Gene3D G3DSA:3.10.129.10 45 177 9.5E-46 T 23-04-2016 IPR029069 HotDog domain RPE_RS19880 847ed68af60104ab49c51b81330c0c23 204 PANTHER PTHR31793 43 192 2.6E-42 T 23-04-2016 RPE_RS19880 847ed68af60104ab49c51b81330c0c23 204 SUPERFAMILY SSF54637 47 177 2.85E-35 T 23-04-2016 IPR029069 HotDog domain RPE_RS19880 847ed68af60104ab49c51b81330c0c23 204 Pfam PF03061 Thioesterase superfamily 64 149 5.9E-15 T 23-04-2016 IPR006683 Thioesterase domain RPE_RS19880 847ed68af60104ab49c51b81330c0c23 204 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 53 161 6.2E-24 T 23-04-2016 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 RPE_RS20075 dbbd6b96caa0dc95094bdf414ffba1b4 226 SUPERFAMILY SSF54427 92 225 1.14E-27 T 23-04-2016 IPR032710 NTF2-like domain RPE_RS20075 dbbd6b96caa0dc95094bdf414ffba1b4 226 Pfam PF04335 VirB8 protein 21 224 3.3E-67 T 23-04-2016 IPR007430 Bacterial virulence protein VirB8 GO:0016020 RPE_RS17130 510e4c11273aec6579e1710b536f8d63 93 Pfam PF11625 Protein of unknown function (DUF3253) 16 90 6.6E-23 T 23-04-2016 IPR021660 Protein of unknown function DUF3253 RPE_RS17130 510e4c11273aec6579e1710b536f8d63 93 Gene3D G3DSA:1.10.10.10 15 92 1.3E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS17130 510e4c11273aec6579e1710b536f8d63 93 SUPERFAMILY SSF46785 15 92 3.81E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS15205 6f828684dd334d5b31102a39106cc454 130 PANTHER PTHR34476 2 90 2.8E-25 T 23-04-2016 RPE_RS15205 6f828684dd334d5b31102a39106cc454 130 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 57 7.7E-17 T 23-04-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RPE_RS15205 6f828684dd334d5b31102a39106cc454 130 Pfam PF01192 RNA polymerase Rpb6 8 58 4.7E-12 T 23-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RPE_RS15205 6f828684dd334d5b31102a39106cc454 130 Gene3D G3DSA:3.90.940.10 1 66 1.0E-10 T 23-04-2016 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RPE_RS15205 6f828684dd334d5b31102a39106cc454 130 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 61 16.149 T 23-04-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RPE_RS15205 6f828684dd334d5b31102a39106cc454 130 SMART SM01409 8 60 3.9E-13 T 23-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RPE_RS15205 6f828684dd334d5b31102a39106cc454 130 SUPERFAMILY SSF63562 1 81 9.07E-21 T 23-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RPE_RS21050 c5dd9dee5527c7d8a86e9723deda7cc9 288 PANTHER PTHR11795:SF396 1 288 8.8E-96 T 23-04-2016 RPE_RS21050 c5dd9dee5527c7d8a86e9723deda7cc9 288 PANTHER PTHR11795 1 288 8.8E-96 T 23-04-2016 RPE_RS21050 c5dd9dee5527c7d8a86e9723deda7cc9 288 Pfam PF02653 Branched-chain amino acid transport system / permease component 7 274 4.5E-39 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RPE_RS11290 a436ab338b6b72294392d3d1e1cb5e1a 216 PANTHER PTHR11260:SF253 2 203 1.5E-78 T 23-04-2016 RPE_RS11290 a436ab338b6b72294392d3d1e1cb5e1a 216 SUPERFAMILY SSF47616 84 203 5.85E-20 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RPE_RS11290 a436ab338b6b72294392d3d1e1cb5e1a 216 Gene3D G3DSA:1.20.1050.10 86 199 1.1E-17 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RPE_RS11290 a436ab338b6b72294392d3d1e1cb5e1a 216 SUPERFAMILY SSF52833 1 80 2.56E-19 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS11290 a436ab338b6b72294392d3d1e1cb5e1a 216 PANTHER PTHR11260 2 203 1.5E-78 T 23-04-2016 RPE_RS11290 a436ab338b6b72294392d3d1e1cb5e1a 216 Gene3D G3DSA:3.40.30.10 2 81 3.6E-20 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS11290 a436ab338b6b72294392d3d1e1cb5e1a 216 Pfam PF13417 Glutathione S-transferase, N-terminal domain 12 77 1.4E-10 T 23-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RPE_RS07760 cd9ffbf3b26803aef9f890ca616527fa 1290 SUPERFAMILY SSF48452 953 989 2.63E-11 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS07760 cd9ffbf3b26803aef9f890ca616527fa 1290 SUPERFAMILY SSF48452 739 835 2.63E-11 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS07760 cd9ffbf3b26803aef9f890ca616527fa 1290 SUPERFAMILY SSF48452 1052 1095 2.63E-11 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS07760 cd9ffbf3b26803aef9f890ca616527fa 1290 Gene3D G3DSA:1.25.40.10 890 997 7.9E-6 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS07760 cd9ffbf3b26803aef9f890ca616527fa 1290 Gene3D G3DSA:1.25.40.10 1109 1157 7.9E-6 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS07760 cd9ffbf3b26803aef9f890ca616527fa 1290 Gene3D G3DSA:1.25.40.10 741 828 8.5E-5 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS24230 d87cd97d7680a063ea0901f9608ea29d 190 Pfam PF01923 Cobalamin adenosyltransferase 7 173 3.2E-60 T 23-04-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 RPE_RS24230 d87cd97d7680a063ea0901f9608ea29d 190 PANTHER PTHR12213:SF0 1 184 1.5E-71 T 23-04-2016 RPE_RS24230 d87cd97d7680a063ea0901f9608ea29d 190 SUPERFAMILY SSF89028 6 186 2.16E-59 T 23-04-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 RPE_RS24230 d87cd97d7680a063ea0901f9608ea29d 190 PANTHER PTHR12213 1 184 1.5E-71 T 23-04-2016 RPE_RS24230 d87cd97d7680a063ea0901f9608ea29d 190 Gene3D G3DSA:1.20.1200.10 16 188 2.4E-63 T 23-04-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 RPE_RS24230 d87cd97d7680a063ea0901f9608ea29d 190 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 13 184 5.0E-75 T 23-04-2016 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 RPE_RS24230 d87cd97d7680a063ea0901f9608ea29d 190 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 8 184 1.5E-56 T 23-04-2016 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 RPE_RS07330 f261e20397aaf8afbbaa16ca21ee911c 509 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 4 495 4.6E-119 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RPE_RS07330 f261e20397aaf8afbbaa16ca21ee911c 509 Pfam PF03023 MviN-like protein 26 463 9.6E-107 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RPE_RS07330 f261e20397aaf8afbbaa16ca21ee911c 509 PANTHER PTHR11206 69 78 2.4E-57 T 23-04-2016 RPE_RS07330 f261e20397aaf8afbbaa16ca21ee911c 509 PANTHER PTHR11206 497 508 2.4E-57 T 23-04-2016 RPE_RS07330 f261e20397aaf8afbbaa16ca21ee911c 509 PANTHER PTHR11206 116 121 2.4E-57 T 23-04-2016 RPE_RS07330 f261e20397aaf8afbbaa16ca21ee911c 509 PANTHER PTHR11206 212 440 2.4E-57 T 23-04-2016 RPE_RS07330 f261e20397aaf8afbbaa16ca21ee911c 509 PIRSF PIRSF002869 1 508 3.5E-137 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RPE_RS07330 f261e20397aaf8afbbaa16ca21ee911c 509 PRINTS PR01806 Virulence factor MviN signature 50 66 4.7E-69 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RPE_RS07330 f261e20397aaf8afbbaa16ca21ee911c 509 PRINTS PR01806 Virulence factor MviN signature 406 423 4.7E-69 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RPE_RS07330 f261e20397aaf8afbbaa16ca21ee911c 509 PRINTS PR01806 Virulence factor MviN signature 31 50 4.7E-69 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RPE_RS07330 f261e20397aaf8afbbaa16ca21ee911c 509 PRINTS PR01806 Virulence factor MviN signature 155 176 4.7E-69 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RPE_RS07330 f261e20397aaf8afbbaa16ca21ee911c 509 PRINTS PR01806 Virulence factor MviN signature 354 373 4.7E-69 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RPE_RS07330 f261e20397aaf8afbbaa16ca21ee911c 509 PRINTS PR01806 Virulence factor MviN signature 256 282 4.7E-69 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RPE_RS07330 f261e20397aaf8afbbaa16ca21ee911c 509 PRINTS PR01806 Virulence factor MviN signature 131 155 4.7E-69 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RPE_RS07330 f261e20397aaf8afbbaa16ca21ee911c 509 PANTHER PTHR11206:SF90 69 78 2.4E-57 T 23-04-2016 RPE_RS07330 f261e20397aaf8afbbaa16ca21ee911c 509 PANTHER PTHR11206:SF90 497 508 2.4E-57 T 23-04-2016 RPE_RS07330 f261e20397aaf8afbbaa16ca21ee911c 509 PANTHER PTHR11206:SF90 116 121 2.4E-57 T 23-04-2016 RPE_RS07330 f261e20397aaf8afbbaa16ca21ee911c 509 PANTHER PTHR11206:SF90 212 440 2.4E-57 T 23-04-2016 RPE_RS09665 426f7eefc882c33e62f62123aa64b428 1284 Pfam PF13547 GTA TIM-barrel-like domain 419 720 5.8E-137 T 23-04-2016 IPR025195 GTA TIM-barrel-like domain RPE_RS09665 426f7eefc882c33e62f62123aa64b428 1284 SUPERFAMILY SSF51445 332 385 4.78E-7 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RPE_RS09665 426f7eefc882c33e62f62123aa64b428 1284 SUPERFAMILY SSF51445 413 528 4.78E-7 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RPE_RS09665 426f7eefc882c33e62f62123aa64b428 1284 SUPERFAMILY SSF51445 588 679 4.78E-7 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RPE_RS09665 426f7eefc882c33e62f62123aa64b428 1284 Pfam PF13550 Putative phage tail protein 778 939 2.9E-37 T 23-04-2016 IPR032876 Tip attachment protein J RPE_RS12330 f885397b0dadc0645bffacc8f426c84c 566 PANTHER PTHR32089:SF40 284 563 9.1E-171 T 23-04-2016 RPE_RS12330 f885397b0dadc0645bffacc8f426c84c 566 PANTHER PTHR32089:SF40 158 251 9.1E-171 T 23-04-2016 RPE_RS12330 f885397b0dadc0645bffacc8f426c84c 566 Pfam PF00672 HAMP domain 197 263 1.3E-9 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS12330 f885397b0dadc0645bffacc8f426c84c 566 SUPERFAMILY SSF58104 245 271 5.1E-63 T 23-04-2016 RPE_RS12330 f885397b0dadc0645bffacc8f426c84c 566 SUPERFAMILY SSF58104 312 559 5.1E-63 T 23-04-2016 RPE_RS12330 f885397b0dadc0645bffacc8f426c84c 566 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 334 363 1.1E-6 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS12330 f885397b0dadc0645bffacc8f426c84c 566 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 433 462 1.1E-6 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS12330 f885397b0dadc0645bffacc8f426c84c 566 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 481 510 1.1E-6 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS12330 f885397b0dadc0645bffacc8f426c84c 566 SMART SM00283 302 560 1.5E-44 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS12330 f885397b0dadc0645bffacc8f426c84c 566 Gene3D G3DSA:1.10.287.950 329 531 4.5E-47 T 23-04-2016 RPE_RS12330 f885397b0dadc0645bffacc8f426c84c 566 PANTHER PTHR32089 284 563 9.1E-171 T 23-04-2016 RPE_RS12330 f885397b0dadc0645bffacc8f426c84c 566 PANTHER PTHR32089 158 251 9.1E-171 T 23-04-2016 RPE_RS12330 f885397b0dadc0645bffacc8f426c84c 566 SMART SM00304 216 269 1.7E-8 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS12330 f885397b0dadc0645bffacc8f426c84c 566 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 377 559 7.7E-36 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS22890 eeb2f919c3ee498a737559d089869dc9 813 SUPERFAMILY SSF81767 245 373 9.94E-33 T 23-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 RPE_RS22890 eeb2f919c3ee498a737559d089869dc9 813 SUPERFAMILY SSF81886 608 809 6.41E-34 T 23-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 RPE_RS22890 eeb2f919c3ee498a737559d089869dc9 813 Gene3D G3DSA:3.90.1440.10 249 372 4.9E-35 T 23-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 RPE_RS22890 eeb2f919c3ee498a737559d089869dc9 813 Pfam PF07516 SecA Wing and Scaffold domain 603 808 1.3E-24 T 23-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 RPE_RS22890 eeb2f919c3ee498a737559d089869dc9 813 SUPERFAMILY SSF52540 373 419 2.72E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS22890 eeb2f919c3ee498a737559d089869dc9 813 Gene3D G3DSA:3.40.50.300 22 246 1.6E-89 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS22890 eeb2f919c3ee498a737559d089869dc9 813 Gene3D G3DSA:3.40.50.300 374 421 1.6E-89 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS22890 eeb2f919c3ee498a737559d089869dc9 813 SUPERFAMILY SSF52540 25 246 2.72E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS22890 eeb2f919c3ee498a737559d089869dc9 813 Pfam PF07517 SecA DEAD-like domain 27 406 6.6E-100 T 23-04-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 RPE_RS22890 eeb2f919c3ee498a737559d089869dc9 813 Hamap MF_01382 Protein translocase subunit SecA [secA]. 23 812 17.277 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RPE_RS22890 eeb2f919c3ee498a737559d089869dc9 813 PANTHER PTHR30612 12 809 6.0E-231 T 23-04-2016 RPE_RS22890 eeb2f919c3ee498a737559d089869dc9 813 Gene3D G3DSA:3.40.50.300 422 589 8.7E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS22890 eeb2f919c3ee498a737559d089869dc9 813 PRINTS PR00906 SecA protein signature 418 431 2.8E-50 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RPE_RS22890 eeb2f919c3ee498a737559d089869dc9 813 PRINTS PR00906 SecA protein signature 381 398 2.8E-50 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RPE_RS22890 eeb2f919c3ee498a737559d089869dc9 813 PRINTS PR00906 SecA protein signature 135 145 2.8E-50 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RPE_RS22890 eeb2f919c3ee498a737559d089869dc9 813 PRINTS PR00906 SecA protein signature 81 105 2.8E-50 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RPE_RS22890 eeb2f919c3ee498a737559d089869dc9 813 PRINTS PR00906 SecA protein signature 119 133 2.8E-50 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RPE_RS22890 eeb2f919c3ee498a737559d089869dc9 813 PRINTS PR00906 SecA protein signature 188 208 2.8E-50 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RPE_RS22890 eeb2f919c3ee498a737559d089869dc9 813 PRINTS PR00906 SecA protein signature 344 366 2.8E-50 T 23-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RPE_RS22890 eeb2f919c3ee498a737559d089869dc9 813 Pfam PF01043 SecA preprotein cross-linking domain 250 363 1.7E-29 T 23-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 RPE_RS22890 eeb2f919c3ee498a737559d089869dc9 813 SUPERFAMILY SSF52540 429 590 3.47E-33 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS22890 eeb2f919c3ee498a737559d089869dc9 813 SMART SM00958 246 363 6.0E-53 T 23-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 RPE_RS22890 eeb2f919c3ee498a737559d089869dc9 813 SMART SM00957 24 407 2.2E-201 T 23-04-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 RPE_RS22890 eeb2f919c3ee498a737559d089869dc9 813 Gene3D G3DSA:1.10.3060.10 632 808 5.9E-23 T 23-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 RPE_RS02390 90f726fb6649a7d0ef122ea7390dcb30 209 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 174 196 1.7E-5 T 23-04-2016 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 RPE_RS02390 90f726fb6649a7d0ef122ea7390dcb30 209 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 22 45 1.7E-5 T 23-04-2016 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 RPE_RS02390 90f726fb6649a7d0ef122ea7390dcb30 209 PANTHER PTHR30485 1 209 5.3E-67 T 23-04-2016 RPE_RS02390 90f726fb6649a7d0ef122ea7390dcb30 209 SUPERFAMILY SSF81342 17 209 5.89E-38 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 RPE_RS02390 90f726fb6649a7d0ef122ea7390dcb30 209 Pfam PF01292 Prokaryotic cytochrome b561 20 206 8.6E-25 T 23-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 RPE_RS02390 90f726fb6649a7d0ef122ea7390dcb30 209 Gene3D G3DSA:1.20.950.20 19 209 3.4E-46 T 23-04-2016 RPE_RS02390 90f726fb6649a7d0ef122ea7390dcb30 209 PANTHER PTHR30485:SF1 1 209 5.3E-67 T 23-04-2016 RPE_RS19640 4708d11ea26d8627d6f42c5dc5e01fb4 672 Pfam PF00672 HAMP domain 302 370 6.1E-10 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS19640 4708d11ea26d8627d6f42c5dc5e01fb4 672 SMART SM00283 408 666 4.8E-52 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS19640 4708d11ea26d8627d6f42c5dc5e01fb4 672 PANTHER PTHR32089 390 669 1.1E-192 T 23-04-2016 RPE_RS19640 4708d11ea26d8627d6f42c5dc5e01fb4 672 PANTHER PTHR32089 242 356 1.1E-192 T 23-04-2016 RPE_RS19640 4708d11ea26d8627d6f42c5dc5e01fb4 672 SUPERFAMILY SSF58104 391 665 2.09E-64 T 23-04-2016 RPE_RS19640 4708d11ea26d8627d6f42c5dc5e01fb4 672 PANTHER PTHR32089:SF40 390 669 1.1E-192 T 23-04-2016 RPE_RS19640 4708d11ea26d8627d6f42c5dc5e01fb4 672 PANTHER PTHR32089:SF40 242 356 1.1E-192 T 23-04-2016 RPE_RS19640 4708d11ea26d8627d6f42c5dc5e01fb4 672 SUPERFAMILY SSF158472 323 369 2.22E-8 T 23-04-2016 RPE_RS19640 4708d11ea26d8627d6f42c5dc5e01fb4 672 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 487 665 2.9E-38 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS19640 4708d11ea26d8627d6f42c5dc5e01fb4 672 SMART SM00304 321 374 2.5E-8 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS19640 4708d11ea26d8627d6f42c5dc5e01fb4 672 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 539 568 1.1E-6 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS19640 4708d11ea26d8627d6f42c5dc5e01fb4 672 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 587 616 1.1E-6 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS19640 4708d11ea26d8627d6f42c5dc5e01fb4 672 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 440 469 1.1E-6 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS19640 4708d11ea26d8627d6f42c5dc5e01fb4 672 Gene3D G3DSA:1.10.287.950 434 635 7.0E-50 T 23-04-2016 RPE_RS11720 883f9d4658be76daa3382012902d6b49 187 Pfam PF00881 Nitroreductase family 9 166 3.7E-25 T 23-04-2016 IPR029479 Nitroreductase RPE_RS11720 883f9d4658be76daa3382012902d6b49 187 SUPERFAMILY SSF55469 1 186 4.06E-37 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 RPE_RS11720 883f9d4658be76daa3382012902d6b49 187 PIRSF PIRSF000232 1 187 1.4E-58 T 23-04-2016 IPR026021 Putative NAD(P)H nitroreductase YdjA-like KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.- RPE_RS11720 883f9d4658be76daa3382012902d6b49 187 PANTHER PTHR23026:SF107 3 187 1.1E-72 T 23-04-2016 RPE_RS11720 883f9d4658be76daa3382012902d6b49 187 Gene3D G3DSA:3.40.109.10 3 185 2.4E-40 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 RPE_RS11720 883f9d4658be76daa3382012902d6b49 187 PANTHER PTHR23026 3 187 1.1E-72 T 23-04-2016 RPE_RS02975 69255eb601eb75688153d6b0b0724468 240 Gene3D G3DSA:3.40.50.300 6 237 4.8E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02975 69255eb601eb75688153d6b0b0724468 240 PANTHER PTHR24220:SF568 10 240 5.9E-85 T 23-04-2016 RPE_RS02975 69255eb601eb75688153d6b0b0724468 240 SUPERFAMILY SSF52540 7 236 2.17E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02975 69255eb601eb75688153d6b0b0724468 240 Pfam PF00005 ABC transporter 24 168 3.6E-28 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS02975 69255eb601eb75688153d6b0b0724468 240 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS02975 69255eb601eb75688153d6b0b0724468 240 SMART SM00382 33 217 1.2E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS02975 69255eb601eb75688153d6b0b0724468 240 PANTHER PTHR24220 10 240 5.9E-85 T 23-04-2016 RPE_RS20715 e75f1befbf5de5930a1eadea6f2d3ffc 331 Gene3D G3DSA:1.10.760.10 179 319 1.4E-48 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS20715 e75f1befbf5de5930a1eadea6f2d3ffc 331 PANTHER PTHR30600:SF7 25 315 3.1E-115 T 23-04-2016 RPE_RS20715 e75f1befbf5de5930a1eadea6f2d3ffc 331 Pfam PF00034 Cytochrome c 196 305 2.9E-10 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS20715 e75f1befbf5de5930a1eadea6f2d3ffc 331 SUPERFAMILY SSF46626 22 175 3.53E-50 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS20715 e75f1befbf5de5930a1eadea6f2d3ffc 331 PIRSF PIRSF000294 4 329 6.2E-131 T 23-04-2016 IPR026259 Di-c-type haem protein, MauG/cytochrome c peroxidase GO:0016491|GO:0020037|GO:0055114 RPE_RS20715 e75f1befbf5de5930a1eadea6f2d3ffc 331 Gene3D G3DSA:1.10.760.10 35 178 3.2E-51 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS20715 e75f1befbf5de5930a1eadea6f2d3ffc 331 PANTHER PTHR30600 25 315 3.1E-115 T 23-04-2016 RPE_RS20715 e75f1befbf5de5930a1eadea6f2d3ffc 331 SUPERFAMILY SSF46626 174 323 5.19E-43 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS20715 e75f1befbf5de5930a1eadea6f2d3ffc 331 Pfam PF03150 Di-haem cytochrome c peroxidase 39 187 4.5E-52 T 23-04-2016 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 RPE_RS15215 e4be4a3311dd18f1b2ce93ee0935704c 225 SMART SM00986 50 216 5.8E-27 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like RPE_RS15215 e4be4a3311dd18f1b2ce93ee0935704c 225 SMART SM00987 50 216 5.8E-27 T 23-04-2016 RPE_RS15215 e4be4a3311dd18f1b2ce93ee0935704c 225 Gene3D G3DSA:3.40.470.10 22 220 7.5E-49 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like RPE_RS15215 e4be4a3311dd18f1b2ce93ee0935704c 225 Pfam PF03167 Uracil DNA glycosylase superfamily 50 219 1.4E-24 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like RPE_RS15215 e4be4a3311dd18f1b2ce93ee0935704c 225 PANTHER PTHR33693 22 222 1.8E-68 T 23-04-2016 RPE_RS15215 e4be4a3311dd18f1b2ce93ee0935704c 225 PANTHER PTHR33693:SF2 22 222 1.8E-68 T 23-04-2016 RPE_RS15215 e4be4a3311dd18f1b2ce93ee0935704c 225 SUPERFAMILY SSF52141 24 223 1.73E-42 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like RPE_RS05060 7b48883daa77809dd1b53956f4d6906a 464 Pfam PF07730 Histidine kinase 268 327 3.4E-6 T 23-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RPE_RS05060 7b48883daa77809dd1b53956f4d6906a 464 PANTHER PTHR24421 203 463 2.5E-24 T 23-04-2016 RPE_RS05060 7b48883daa77809dd1b53956f4d6906a 464 Gene3D G3DSA:3.30.565.10 374 463 1.8E-7 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS05060 7b48883daa77809dd1b53956f4d6906a 464 SUPERFAMILY SSF55874 353 463 4.66E-12 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS19760 d34c55fb91e33de7fe946d99c88ddc76 413 SUPERFAMILY SSF111369 63 134 3.14E-10 T 23-04-2016 RPE_RS19760 d34c55fb91e33de7fe946d99c88ddc76 413 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 204 396 9.6E-39 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RPE_RS19760 d34c55fb91e33de7fe946d99c88ddc76 413 PANTHER PTHR32347 7 412 2.8E-88 T 23-04-2016 RPE_RS19760 d34c55fb91e33de7fe946d99c88ddc76 413 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 363 378 3.5E-6 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RPE_RS19760 d34c55fb91e33de7fe946d99c88ddc76 413 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 82 102 3.5E-6 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RPE_RS19760 d34c55fb91e33de7fe946d99c88ddc76 413 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 72 331 9.8E-23 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RPE_RS19760 d34c55fb91e33de7fe946d99c88ddc76 413 Gene3D G3DSA:2.40.50.100 72 104 1.8E-18 T 23-04-2016 RPE_RS19760 d34c55fb91e33de7fe946d99c88ddc76 413 Gene3D G3DSA:2.40.50.100 225 257 1.8E-18 T 23-04-2016 RPE_RS19760 d34c55fb91e33de7fe946d99c88ddc76 413 PANTHER PTHR32347:SF14 7 412 2.8E-88 T 23-04-2016 RPE_RS19760 d34c55fb91e33de7fe946d99c88ddc76 413 SUPERFAMILY SSF111369 205 335 3.79E-11 T 23-04-2016 RPE_RS16470 33098d08a98a84e397ee0f1e0fafdb48 357 Gene3D G3DSA:3.90.650.10 175 348 2.4E-63 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RPE_RS16470 33098d08a98a84e397ee0f1e0fafdb48 357 Gene3D G3DSA:3.30.1330.10 23 171 1.3E-60 T 23-04-2016 IPR016188 PurM-like, N-terminal domain RPE_RS16470 33098d08a98a84e397ee0f1e0fafdb48 357 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 8 349 43.76 T 23-04-2016 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RPE_RS16470 33098d08a98a84e397ee0f1e0fafdb48 357 Pfam PF00586 AIR synthase related protein, N-terminal domain 62 165 3.8E-16 T 23-04-2016 IPR016188 PurM-like, N-terminal domain RPE_RS16470 33098d08a98a84e397ee0f1e0fafdb48 357 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 8 340 3.4E-127 T 23-04-2016 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RPE_RS16470 33098d08a98a84e397ee0f1e0fafdb48 357 SUPERFAMILY SSF56042 174 347 1.18E-55 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RPE_RS16470 33098d08a98a84e397ee0f1e0fafdb48 357 PANTHER PTHR10520 5 357 3.7E-208 T 23-04-2016 RPE_RS16470 33098d08a98a84e397ee0f1e0fafdb48 357 Pfam PF02769 AIR synthase related protein, C-terminal domain 179 345 1.7E-33 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RPE_RS16470 33098d08a98a84e397ee0f1e0fafdb48 357 SUPERFAMILY SSF55326 8 171 1.48E-48 T 23-04-2016 RPE_RS15940 1533eb64ee76914e0c3902d6974d6d06 445 SUPERFAMILY SSF56801 45 428 6.02E-50 T 23-04-2016 RPE_RS15940 1533eb64ee76914e0c3902d6974d6d06 445 Pfam PF00501 AMP-binding enzyme 83 299 4.3E-15 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS15940 1533eb64ee76914e0c3902d6974d6d06 445 Gene3D G3DSA:3.30.300.30 338 440 1.2E-31 T 23-04-2016 RPE_RS15940 1533eb64ee76914e0c3902d6974d6d06 445 Pfam PF14535 AMP-binding enzyme C-terminal domain 348 440 9.8E-22 T 23-04-2016 IPR028154 AMP-dependent ligase, C-terminal RPE_RS15940 1533eb64ee76914e0c3902d6974d6d06 445 Gene3D G3DSA:3.40.50.980 95 259 5.4E-13 T 23-04-2016 RPE_RS15940 1533eb64ee76914e0c3902d6974d6d06 445 PANTHER PTHR36932:SF1 10 410 4.1E-75 T 23-04-2016 RPE_RS15940 1533eb64ee76914e0c3902d6974d6d06 445 PANTHER PTHR36932 10 410 4.1E-75 T 23-04-2016 RPE_RS05535 a40025164d2dc7b273d9763acf34cb00 540 TIGRFAM TIGR04178 exo_archaeo: exosortase/archaeosortase family protein 185 273 1.4E-19 T 23-04-2016 IPR026392 Exosortase/Archaeosortase domain RPE_RS05535 a40025164d2dc7b273d9763acf34cb00 540 TIGRFAM TIGR04152 exosort_VPLPA: exosortase D, VPLPA-CTERM-specific 41 521 7.7E-166 T 23-04-2016 IPR026491 Exosortase D, VPLPA-CTERM-specific RPE_RS05535 a40025164d2dc7b273d9763acf34cb00 540 TIGRFAM TIGR02602 8TM_EpsH: exosortase 39 273 1.8E-51 T 23-04-2016 IPR013426 Exosortase, EpsH RPE_RS05535 a40025164d2dc7b273d9763acf34cb00 540 Pfam PF11984 Protein of unknown function (DUF3485) 319 517 1.7E-50 T 23-04-2016 IPR014263 Methanolan biosynthesis EpsI RPE_RS05535 a40025164d2dc7b273d9763acf34cb00 540 Pfam PF09721 Transmembrane exosortase (Exosortase_EpsH) 26 278 2.7E-60 T 23-04-2016 IPR019127 Exosortase EpsH-related KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RPE_RS05535 a40025164d2dc7b273d9763acf34cb00 540 TIGRFAM TIGR02914 EpsI_fam: EpsI family protein 347 520 2.0E-39 T 23-04-2016 IPR014263 Methanolan biosynthesis EpsI RPE_RS05290 8929f48318780ee25cfcd84b7b2c61dc 210 Gene3D G3DSA:1.10.760.10 32 105 1.8E-21 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS05290 8929f48318780ee25cfcd84b7b2c61dc 210 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 128 195 3.3E-7 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS05290 8929f48318780ee25cfcd84b7b2c61dc 210 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 33 100 3.5E-5 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS05290 8929f48318780ee25cfcd84b7b2c61dc 210 Gene3D G3DSA:1.10.760.10 113 198 3.4E-20 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS05290 8929f48318780ee25cfcd84b7b2c61dc 210 PANTHER PTHR33751 15 205 4.7E-54 T 23-04-2016 RPE_RS05290 8929f48318780ee25cfcd84b7b2c61dc 210 PIRSF PIRSF000005 1 200 9.8E-50 T 23-04-2016 IPR024167 Cytochrome c4 GO:0005506|GO:0009055|GO:0020037|GO:0042597 RPE_RS05290 8929f48318780ee25cfcd84b7b2c61dc 210 SUPERFAMILY SSF46626 18 107 1.19E-18 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS05290 8929f48318780ee25cfcd84b7b2c61dc 210 PANTHER PTHR33751:SF3 15 205 4.7E-54 T 23-04-2016 RPE_RS05290 8929f48318780ee25cfcd84b7b2c61dc 210 SUPERFAMILY SSF46626 113 198 8.6E-17 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS17310 9911e744cf1d4b5e184a8fead1b3137b 191 Pfam PF13649 Methyltransferase domain 45 142 7.2E-7 T 23-04-2016 RPE_RS17310 9911e744cf1d4b5e184a8fead1b3137b 191 PANTHER PTHR11727 38 137 2.2E-33 T 23-04-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm RPE_RS17310 9911e744cf1d4b5e184a8fead1b3137b 191 Gene3D G3DSA:3.40.50.150 34 104 2.3E-10 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS17310 9911e744cf1d4b5e184a8fead1b3137b 191 PANTHER PTHR11727:SF14 38 137 2.2E-33 T 23-04-2016 RPE_RS17310 9911e744cf1d4b5e184a8fead1b3137b 191 SUPERFAMILY SSF53335 8 165 1.92E-20 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS05330 c72d1413cf018394c545a861e02f236c 704 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 663 689 - T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS05330 c72d1413cf018394c545a861e02f236c 704 Pfam PF04539 Sigma-70 region 3 549 624 4.7E-30 T 23-04-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS05330 c72d1413cf018394c545a861e02f236c 704 Pfam PF04542 Sigma-70 region 2 470 539 2.1E-21 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS05330 c72d1413cf018394c545a861e02f236c 704 Gene3D G3DSA:1.10.601.10 263 539 1.7E-133 T 23-04-2016 RPE_RS05330 c72d1413cf018394c545a861e02f236c 704 Gene3D G3DSA:1.10.601.10 148 220 1.7E-133 T 23-04-2016 RPE_RS05330 c72d1413cf018394c545a861e02f236c 704 SUPERFAMILY SSF88659 600 702 3.4E-26 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS05330 c72d1413cf018394c545a861e02f236c 704 Pfam PF00140 Sigma-70 factor, region 1.2 134 167 1.5E-13 T 23-04-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS05330 c72d1413cf018394c545a861e02f236c 704 SUPERFAMILY SSF88946 260 537 5.49E-99 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS05330 c72d1413cf018394c545a861e02f236c 704 SUPERFAMILY SSF88946 151 214 5.49E-99 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS05330 c72d1413cf018394c545a861e02f236c 704 SUPERFAMILY SSF88659 543 616 6.1E-22 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS05330 c72d1413cf018394c545a861e02f236c 704 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 466 702 3.8E-120 T 23-04-2016 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 RPE_RS05330 c72d1413cf018394c545a861e02f236c 704 Gene3D G3DSA:1.10.10.10 543 594 2.2E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS05330 c72d1413cf018394c545a861e02f236c 704 Pfam PF04545 Sigma-70, region 4 638 691 1.5E-18 T 23-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS05330 c72d1413cf018394c545a861e02f236c 704 Pfam PF04546 Sigma-70, non-essential region 176 438 9.5E-46 T 23-04-2016 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS05330 c72d1413cf018394c545a861e02f236c 704 PANTHER PTHR30603 19 188 8.4E-240 T 23-04-2016 RPE_RS05330 c72d1413cf018394c545a861e02f236c 704 PANTHER PTHR30603 421 703 8.4E-240 T 23-04-2016 RPE_RS05330 c72d1413cf018394c545a861e02f236c 704 PANTHER PTHR30603:SF0 19 188 8.4E-240 T 23-04-2016 RPE_RS05330 c72d1413cf018394c545a861e02f236c 704 PANTHER PTHR30603:SF0 421 703 8.4E-240 T 23-04-2016 RPE_RS05330 c72d1413cf018394c545a861e02f236c 704 PRINTS PR00046 Major sigma-70 factor signature 518 526 7.5E-31 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS05330 c72d1413cf018394c545a861e02f236c 704 PRINTS PR00046 Major sigma-70 factor signature 678 689 7.5E-31 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS05330 c72d1413cf018394c545a861e02f236c 704 PRINTS PR00046 Major sigma-70 factor signature 663 678 7.5E-31 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS05330 c72d1413cf018394c545a861e02f236c 704 PRINTS PR00046 Major sigma-70 factor signature 642 654 7.5E-31 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS05330 c72d1413cf018394c545a861e02f236c 704 PRINTS PR00046 Major sigma-70 factor signature 494 507 7.5E-31 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS05330 c72d1413cf018394c545a861e02f236c 704 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 24 703 45.555 T 23-04-2016 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 RPE_RS05330 c72d1413cf018394c545a861e02f236c 704 Pfam PF03979 Sigma-70 factor, region 1.1 37 109 1.0E-23 T 23-04-2016 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 RPE_RS05330 c72d1413cf018394c545a861e02f236c 704 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 494 507 - T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS05330 c72d1413cf018394c545a861e02f236c 704 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 466 691 6.6E-38 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS05330 c72d1413cf018394c545a861e02f236c 704 Gene3D G3DSA:1.10.10.10 632 703 2.1E-32 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS11570 ff4acc3a448a7867269355077cd29551 296 Gene3D G3DSA:3.90.226.10 2 275 3.5E-85 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS11570 ff4acc3a448a7867269355077cd29551 296 PANTHER PTHR11941 92 275 1.4E-158 T 23-04-2016 RPE_RS11570 ff4acc3a448a7867269355077cd29551 296 PANTHER PTHR11941 1 71 1.4E-158 T 23-04-2016 RPE_RS11570 ff4acc3a448a7867269355077cd29551 296 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 73 8.6E-18 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RPE_RS11570 ff4acc3a448a7867269355077cd29551 296 Pfam PF00378 Enoyl-CoA hydratase/isomerase 105 277 1.7E-37 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RPE_RS11570 ff4acc3a448a7867269355077cd29551 296 PANTHER PTHR11941:SF95 92 275 1.4E-158 T 23-04-2016 RPE_RS11570 ff4acc3a448a7867269355077cd29551 296 PANTHER PTHR11941:SF95 1 71 1.4E-158 T 23-04-2016 RPE_RS11570 ff4acc3a448a7867269355077cd29551 296 SUPERFAMILY SSF52096 1 277 8.3E-83 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS22185 11c8c812db61dcc080b044f06bcd43ba 1154 SUPERFAMILY SSF52540 941 1145 5.02E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS22185 11c8c812db61dcc080b044f06bcd43ba 1154 SUPERFAMILY SSF52540 1 210 5.02E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS22185 11c8c812db61dcc080b044f06bcd43ba 1154 TIGRFAM TIGR02168 SMC_prok_B: chromosome segregation protein SMC 2 1141 2.7E-256 T 23-04-2016 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 RPE_RS22185 11c8c812db61dcc080b044f06bcd43ba 1154 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 1144 20.986 T 23-04-2016 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 RPE_RS22185 11c8c812db61dcc080b044f06bcd43ba 1154 PANTHER PTHR18937:SF261 593 1153 0.0 T 23-04-2016 RPE_RS22185 11c8c812db61dcc080b044f06bcd43ba 1154 PANTHER PTHR18937:SF261 1 571 0.0 T 23-04-2016 RPE_RS22185 11c8c812db61dcc080b044f06bcd43ba 1154 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 1135 4.6E-59 T 23-04-2016 IPR003395 RecF/RecN/SMC, N-terminal RPE_RS22185 11c8c812db61dcc080b044f06bcd43ba 1154 SMART SM00968 507 595 2.4E-5 T 23-04-2016 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 RPE_RS22185 11c8c812db61dcc080b044f06bcd43ba 1154 PANTHER PTHR18937 593 1153 0.0 T 23-04-2016 RPE_RS22185 11c8c812db61dcc080b044f06bcd43ba 1154 PANTHER PTHR18937 1 571 0.0 T 23-04-2016 RPE_RS22185 11c8c812db61dcc080b044f06bcd43ba 1154 Gene3D G3DSA:3.40.50.300 1 166 6.3E-82 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS22185 11c8c812db61dcc080b044f06bcd43ba 1154 Gene3D G3DSA:3.40.50.300 978 1147 6.3E-82 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS22185 11c8c812db61dcc080b044f06bcd43ba 1154 SUPERFAMILY SSF75553 490 644 1.14E-7 T 23-04-2016 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 RPE_RS07345 fa87bef70b3266e1c512e080947d4859 767 Gene3D G3DSA:3.90.1170.50 7 124 4.1E-36 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RPE_RS07345 fa87bef70b3266e1c512e080947d4859 767 SMART SM01008 22 136 5.0E-48 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RPE_RS07345 fa87bef70b3266e1c512e080947d4859 767 PANTHER PTHR11908:SF76 8 765 0.0 T 23-04-2016 RPE_RS07345 fa87bef70b3266e1c512e080947d4859 767 SUPERFAMILY SSF54665 5 158 3.4E-43 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RPE_RS07345 fa87bef70b3266e1c512e080947d4859 767 PANTHER PTHR11908 8 765 0.0 T 23-04-2016 RPE_RS07345 fa87bef70b3266e1c512e080947d4859 767 Gene3D G3DSA:3.30.365.10 182 289 5.0E-32 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS07345 fa87bef70b3266e1c512e080947d4859 767 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 23 136 2.8E-23 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RPE_RS07345 fa87bef70b3266e1c512e080947d4859 767 Gene3D G3DSA:3.30.365.10 461 612 2.4E-43 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS07345 fa87bef70b3266e1c512e080947d4859 767 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 154 693 5.2E-164 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS07345 fa87bef70b3266e1c512e080947d4859 767 Gene3D G3DSA:3.30.365.10 291 366 6.0E-42 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS07345 fa87bef70b3266e1c512e080947d4859 767 Gene3D G3DSA:3.30.365.10 125 181 6.0E-42 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS07345 fa87bef70b3266e1c512e080947d4859 767 SUPERFAMILY SSF56003 128 762 2.49E-187 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS07345 fa87bef70b3266e1c512e080947d4859 767 Gene3D G3DSA:3.30.365.10 613 761 4.5E-67 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS07345 fa87bef70b3266e1c512e080947d4859 767 Gene3D G3DSA:3.30.365.10 369 460 4.5E-67 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS21075 3e5ec05ab3b11e1223d166db4d96dbb9 635 SUPERFAMILY SSF51735 294 569 3.69E-53 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS21075 3e5ec05ab3b11e1223d166db4d96dbb9 635 Gene3D G3DSA:3.90.25.10 482 569 1.1E-9 T 23-04-2016 RPE_RS21075 3e5ec05ab3b11e1223d166db4d96dbb9 635 Gene3D G3DSA:3.40.50.720 296 481 1.8E-38 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS21075 3e5ec05ab3b11e1223d166db4d96dbb9 635 PANTHER PTHR10366 295 572 1.8E-104 T 23-04-2016 RPE_RS21075 3e5ec05ab3b11e1223d166db4d96dbb9 635 PANTHER PTHR10366:SF256 295 572 1.8E-104 T 23-04-2016 RPE_RS21075 3e5ec05ab3b11e1223d166db4d96dbb9 635 Pfam PF02719 Polysaccharide biosynthesis protein 296 591 6.3E-106 T 23-04-2016 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain RPE_RS02455 801188ed144ae0bb092aea1833c770bb 318 SUPERFAMILY SSF54001 38 232 5.0E-27 T 23-04-2016 RPE_RS02455 801188ed144ae0bb092aea1833c770bb 318 Gene3D G3DSA:2.30.30.330 36 230 1.6E-22 T 23-04-2016 RPE_RS02455 801188ed144ae0bb092aea1833c770bb 318 Pfam PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family 38 140 2.9E-12 T 23-04-2016 IPR024453 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family RPE_RS07295 13042d7f63afdcadb69f99f9036dd4bc 177 PIRSF PIRSF004682 1 166 3.3E-54 T 23-04-2016 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 RPE_RS07295 13042d7f63afdcadb69f99f9036dd4bc 177 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 9 153 9.2E-35 T 23-04-2016 IPR006543 Histidinol-phosphate phosphatase GO:0016791 RPE_RS07295 13042d7f63afdcadb69f99f9036dd4bc 177 SUPERFAMILY SSF56784 7 162 3.76E-42 T 23-04-2016 IPR023214 HAD-like domain RPE_RS07295 13042d7f63afdcadb69f99f9036dd4bc 177 PANTHER PTHR23133 7 153 4.6E-49 T 23-04-2016 RPE_RS07295 13042d7f63afdcadb69f99f9036dd4bc 177 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 9 156 1.1E-28 T 23-04-2016 IPR006549 HAD-superfamily hydrolase,subfamily IIIA RPE_RS07295 13042d7f63afdcadb69f99f9036dd4bc 177 Gene3D G3DSA:3.40.50.1000 7 159 5.2E-48 T 23-04-2016 IPR023214 HAD-like domain RPE_RS07295 13042d7f63afdcadb69f99f9036dd4bc 177 PANTHER PTHR23133:SF3 7 153 4.6E-49 T 23-04-2016 RPE_RS07295 13042d7f63afdcadb69f99f9036dd4bc 177 Pfam PF13242 HAD-hyrolase-like 112 159 1.6E-6 T 23-04-2016 RPE_RS03170 6e151aea231e52aa7272b0b5f44a88f6 1148 Gene3D G3DSA:3.30.470.20 205 456 4.3E-96 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RPE_RS03170 6e151aea231e52aa7272b0b5f44a88f6 1148 Gene3D G3DSA:1.10.10.60 952 990 1.6E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS03170 6e151aea231e52aa7272b0b5f44a88f6 1148 Gene3D G3DSA:2.40.50.100 1072 1146 1.5E-23 T 23-04-2016 RPE_RS03170 6e151aea231e52aa7272b0b5f44a88f6 1148 PANTHER PTHR18866 2 1146 0.0 T 23-04-2016 RPE_RS03170 6e151aea231e52aa7272b0b5f44a88f6 1148 Pfam PF00682 HMGL-like 533 803 2.6E-31 T 23-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 RPE_RS03170 6e151aea231e52aa7272b0b5f44a88f6 1148 PIRSF PIRSF001594 1 1148 0.0 T 23-04-2016 IPR005930 Pyruvate carboxylase GO:0004736|GO:0005524|GO:0006090|GO:0006094|GO:0009374 KEGG: 00020+6.4.1.1|KEGG: 00620+6.4.1.1|KEGG: 00720+6.4.1.1|MetaCyc: PWY-5750|MetaCyc: PWY-6142|MetaCyc: PWY-6146|UniPathway: UPA00138 RPE_RS03170 6e151aea231e52aa7272b0b5f44a88f6 1148 Gene3D G3DSA:3.20.20.70 510 819 3.2E-138 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS03170 6e151aea231e52aa7272b0b5f44a88f6 1148 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 118 324 4.6E-70 T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RPE_RS03170 6e151aea231e52aa7272b0b5f44a88f6 1148 SUPERFAMILY SSF52440 3 115 1.58E-42 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RPE_RS03170 6e151aea231e52aa7272b0b5f44a88f6 1148 Pfam PF00289 Biotin carboxylase, N-terminal domain 2 112 2.6E-40 T 23-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain RPE_RS03170 6e151aea231e52aa7272b0b5f44a88f6 1148 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 289 296 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RPE_RS03170 6e151aea231e52aa7272b0b5f44a88f6 1148 Pfam PF02785 Biotin carboxylase C-terminal domain 345 453 5.0E-32 T 23-04-2016 IPR005482 Biotin carboxylase, C-terminal RPE_RS03170 6e151aea231e52aa7272b0b5f44a88f6 1148 Gene3D G3DSA:3.40.50.20 3 131 1.6E-47 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RPE_RS03170 6e151aea231e52aa7272b0b5f44a88f6 1148 TIGRFAM TIGR01235 pyruv_carbox: pyruvate carboxylase 5 1147 0.0 T 23-04-2016 IPR005930 Pyruvate carboxylase GO:0004736|GO:0005524|GO:0006090|GO:0006094|GO:0009374 KEGG: 00020+6.4.1.1|KEGG: 00620+6.4.1.1|KEGG: 00720+6.4.1.1|MetaCyc: PWY-5750|MetaCyc: PWY-6142|MetaCyc: PWY-6146|UniPathway: UPA00138 RPE_RS03170 6e151aea231e52aa7272b0b5f44a88f6 1148 SUPERFAMILY SSF51246 340 457 7.85E-36 T 23-04-2016 IPR011054 Rudiment single hybrid motif RPE_RS03170 6e151aea231e52aa7272b0b5f44a88f6 1148 Pfam PF00364 Biotin-requiring enzyme 1081 1145 1.2E-15 T 23-04-2016 IPR000089 Biotin/lipoyl attachment RPE_RS03170 6e151aea231e52aa7272b0b5f44a88f6 1148 SUPERFAMILY SSF51569 525 836 1.23E-83 T 23-04-2016 RPE_RS03170 6e151aea231e52aa7272b0b5f44a88f6 1148 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 1104 1121 - T 23-04-2016 IPR001882 Biotin-binding site RPE_RS03170 6e151aea231e52aa7272b0b5f44a88f6 1148 Gene3D G3DSA:3.30.1490.20 132 203 5.5E-27 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RPE_RS03170 6e151aea231e52aa7272b0b5f44a88f6 1148 Gene3D G3DSA:3.10.600.10 991 1068 4.0E-32 T 23-04-2016 RPE_RS03170 6e151aea231e52aa7272b0b5f44a88f6 1148 PANTHER PTHR18866:SF103 2 1146 0.0 T 23-04-2016 RPE_RS03170 6e151aea231e52aa7272b0b5f44a88f6 1148 SUPERFAMILY SSF51230 1071 1146 1.96E-19 T 23-04-2016 IPR011053 Single hybrid motif RPE_RS03170 6e151aea231e52aa7272b0b5f44a88f6 1148 SUPERFAMILY SSF89000 833 1013 2.12E-51 T 23-04-2016 RPE_RS03170 6e151aea231e52aa7272b0b5f44a88f6 1148 Pfam PF02436 Conserved carboxylase domain 828 1030 3.3E-70 T 23-04-2016 IPR003379 Carboxylase, conserved domain RPE_RS03170 6e151aea231e52aa7272b0b5f44a88f6 1148 SMART SM00878 345 452 5.5E-46 T 23-04-2016 IPR005482 Biotin carboxylase, C-terminal RPE_RS03170 6e151aea231e52aa7272b0b5f44a88f6 1148 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 155 169 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RPE_RS03170 6e151aea231e52aa7272b0b5f44a88f6 1148 SUPERFAMILY SSF56059 85 364 1.24E-63 T 23-04-2016 RPE_RS03290 cda249f699faba84d08b26ef75d608df 341 PANTHER PTHR10108:SF915 263 341 1.7E-142 T 23-04-2016 RPE_RS03290 cda249f699faba84d08b26ef75d608df 341 PANTHER PTHR10108:SF915 2 247 1.7E-142 T 23-04-2016 RPE_RS03290 cda249f699faba84d08b26ef75d608df 341 Gene3D G3DSA:3.40.50.150 58 335 1.3E-73 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS03290 cda249f699faba84d08b26ef75d608df 341 Pfam PF02353 Mycolic acid cyclopropane synthetase 64 299 6.4E-41 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS03290 cda249f699faba84d08b26ef75d608df 341 SUPERFAMILY SSF53335 66 331 1.49E-57 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS03290 cda249f699faba84d08b26ef75d608df 341 PANTHER PTHR10108 263 341 1.7E-142 T 23-04-2016 RPE_RS03290 cda249f699faba84d08b26ef75d608df 341 PANTHER PTHR10108 2 247 1.7E-142 T 23-04-2016 RPE_RS08565 bd060ddaddae8af0317de9d16b06fb06 262 PANTHER PTHR24322 16 151 3.6E-49 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS08565 bd060ddaddae8af0317de9d16b06fb06 262 PANTHER PTHR24322 167 199 3.6E-49 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS08565 bd060ddaddae8af0317de9d16b06fb06 262 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 154 182 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RPE_RS08565 bd060ddaddae8af0317de9d16b06fb06 262 SUPERFAMILY SSF51735 6 261 4.82E-76 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS08565 bd060ddaddae8af0317de9d16b06fb06 262 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 21 260 3.9E-61 T 23-04-2016 RPE_RS08565 bd060ddaddae8af0317de9d16b06fb06 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 223 243 3.5E-34 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS08565 bd060ddaddae8af0317de9d16b06fb06 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 13 30 3.5E-34 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS08565 bd060ddaddae8af0317de9d16b06fb06 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 3.5E-34 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS08565 bd060ddaddae8af0317de9d16b06fb06 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 186 3.5E-34 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS08565 bd060ddaddae8af0317de9d16b06fb06 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 188 205 3.5E-34 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS08565 bd060ddaddae8af0317de9d16b06fb06 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 141 157 3.5E-34 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS08565 bd060ddaddae8af0317de9d16b06fb06 262 Gene3D G3DSA:3.40.50.720 3 261 4.2E-81 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS08565 bd060ddaddae8af0317de9d16b06fb06 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 186 3.3E-6 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS08565 bd060ddaddae8af0317de9d16b06fb06 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 155 3.3E-6 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS08565 bd060ddaddae8af0317de9d16b06fb06 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 87 98 3.3E-6 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS08565 bd060ddaddae8af0317de9d16b06fb06 262 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 12 202 3.5E-4 T 23-04-2016 RPE_RS18130 777829a4088c954d4d30c69c0522c708 219 Gene3D G3DSA:1.10.357.10 3 202 9.2E-31 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RPE_RS18130 777829a4088c954d4d30c69c0522c708 219 SUPERFAMILY SSF48498 81 204 3.65E-26 T 23-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RPE_RS18130 777829a4088c954d4d30c69c0522c708 219 ProSitePatterns PS01081 TetR-type HTH domain signature. 22 53 - T 23-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RPE_RS18130 777829a4088c954d4d30c69c0522c708 219 PANTHER PTHR30055:SF73 5 207 8.7E-53 T 23-04-2016 RPE_RS18130 777829a4088c954d4d30c69c0522c708 219 SUPERFAMILY SSF46689 3 59 7.7E-16 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS18130 777829a4088c954d4d30c69c0522c708 219 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 56 1.4E-14 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS18130 777829a4088c954d4d30c69c0522c708 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 4.0E-8 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS18130 777829a4088c954d4d30c69c0522c708 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 4.0E-8 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS18130 777829a4088c954d4d30c69c0522c708 219 PANTHER PTHR30055 5 207 8.7E-53 T 23-04-2016 RPE_RS24665 7a0b37d5cdc613d581488e7f16a54188 414 SMART SM00342 289 374 7.6E-22 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RPE_RS24665 7a0b37d5cdc613d581488e7f16a54188 414 PANTHER PTHR11019 194 382 1.4E-25 T 23-04-2016 RPE_RS24665 7a0b37d5cdc613d581488e7f16a54188 414 SUPERFAMILY SSF46689 275 323 5.68E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS24665 7a0b37d5cdc613d581488e7f16a54188 414 Gene3D G3DSA:1.10.10.60 270 326 2.2E-12 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS24665 7a0b37d5cdc613d581488e7f16a54188 414 SMART SM00091 146 215 91.0 T 23-04-2016 IPR000014 PAS domain RPE_RS24665 7a0b37d5cdc613d581488e7f16a54188 414 SMART SM00091 28 97 5.8E-5 T 23-04-2016 IPR000014 PAS domain RPE_RS24665 7a0b37d5cdc613d581488e7f16a54188 414 SUPERFAMILY SSF55785 160 261 9.77E-14 T 23-04-2016 IPR000014 PAS domain RPE_RS24665 7a0b37d5cdc613d581488e7f16a54188 414 Pfam PF12833 Helix-turn-helix domain 295 376 1.1E-23 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RPE_RS24665 7a0b37d5cdc613d581488e7f16a54188 414 Gene3D G3DSA:1.10.10.60 327 372 2.6E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS24665 7a0b37d5cdc613d581488e7f16a54188 414 SMART SM00086 104 147 0.0026 T 23-04-2016 IPR001610 PAC motif RPE_RS24665 7a0b37d5cdc613d581488e7f16a54188 414 SMART SM00086 220 262 0.098 T 23-04-2016 IPR001610 PAC motif RPE_RS24665 7a0b37d5cdc613d581488e7f16a54188 414 Pfam PF08447 PAS fold 172 253 7.8E-13 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 RPE_RS24665 7a0b37d5cdc613d581488e7f16a54188 414 Pfam PF08447 PAS fold 52 140 1.1E-10 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 RPE_RS24665 7a0b37d5cdc613d581488e7f16a54188 414 SUPERFAMILY SSF46689 325 376 1.08E-5 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS24665 7a0b37d5cdc613d581488e7f16a54188 414 Gene3D G3DSA:3.30.450.20 159 259 3.0E-14 T 23-04-2016 RPE_RS24665 7a0b37d5cdc613d581488e7f16a54188 414 Gene3D G3DSA:3.30.450.20 32 140 1.2E-16 T 23-04-2016 RPE_RS24665 7a0b37d5cdc613d581488e7f16a54188 414 SUPERFAMILY SSF55785 38 140 3.14E-17 T 23-04-2016 IPR000014 PAS domain RPE_RS24665 7a0b37d5cdc613d581488e7f16a54188 414 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 50 130 9.4E-12 T 23-04-2016 IPR000014 PAS domain RPE_RS11240 e80ba2e6b3fdbefd63b2756fc1959e31 339 PANTHER PTHR11751 6 336 4.7E-48 T 23-04-2016 RPE_RS11240 e80ba2e6b3fdbefd63b2756fc1959e31 339 PANTHER PTHR11751:SF3 6 336 4.7E-48 T 23-04-2016 RPE_RS11240 e80ba2e6b3fdbefd63b2756fc1959e31 339 Gene3D G3DSA:3.90.1150.10 235 329 5.8E-6 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS11240 e80ba2e6b3fdbefd63b2756fc1959e31 339 Gene3D G3DSA:3.40.640.10 43 234 3.9E-40 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS11240 e80ba2e6b3fdbefd63b2756fc1959e31 339 TIGRFAM TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase 3 326 1.1E-100 T 23-04-2016 IPR005860 L-threonine-O-3-phosphate decarboxylase GO:0003824|GO:0009236 KEGG: 00860+4.1.1.81|MetaCyc: PWY-5443|UniPathway: UPA00148 RPE_RS11240 e80ba2e6b3fdbefd63b2756fc1959e31 339 SUPERFAMILY SSF53383 3 328 7.6E-53 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS11240 e80ba2e6b3fdbefd63b2756fc1959e31 339 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 191 204 - T 23-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 RPE_RS11240 e80ba2e6b3fdbefd63b2756fc1959e31 339 Pfam PF00155 Aminotransferase class I and II 61 315 5.5E-28 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RPE_RS18105 a47520406004997966affd0715351334 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 253 2.9E-62 T 23-04-2016 RPE_RS18105 a47520406004997966affd0715351334 255 PANTHER PTHR24322 13 144 1.2E-90 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18105 a47520406004997966affd0715351334 255 PANTHER PTHR24322 160 192 1.2E-90 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18105 a47520406004997966affd0715351334 255 PANTHER PTHR24322:SF650 13 144 1.2E-90 T 23-04-2016 RPE_RS18105 a47520406004997966affd0715351334 255 PANTHER PTHR24322:SF650 160 192 1.2E-90 T 23-04-2016 RPE_RS18105 a47520406004997966affd0715351334 255 Gene3D G3DSA:3.40.50.720 2 254 1.7E-83 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS18105 a47520406004997966affd0715351334 255 SUPERFAMILY SSF51735 8 254 1.15E-80 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS18105 a47520406004997966affd0715351334 255 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 147 175 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RPE_RS18105 a47520406004997966affd0715351334 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 2.2E-39 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18105 a47520406004997966affd0715351334 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 2.2E-39 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18105 a47520406004997966affd0715351334 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 2.2E-39 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18105 a47520406004997966affd0715351334 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 2.2E-39 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18105 a47520406004997966affd0715351334 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 2.2E-39 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18105 a47520406004997966affd0715351334 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 2.2E-39 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS08315 35debc0ca4ed6f1c636b17b4321f2749 448 Pfam PF02653 Branched-chain amino acid transport system / permease component 135 415 7.2E-49 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RPE_RS08315 35debc0ca4ed6f1c636b17b4321f2749 448 PANTHER PTHR30482:SF9 123 446 7.8E-167 T 23-04-2016 RPE_RS08315 35debc0ca4ed6f1c636b17b4321f2749 448 PANTHER PTHR30482 123 446 7.8E-167 T 23-04-2016 RPE_RS08315 35debc0ca4ed6f1c636b17b4321f2749 448 Pfam PF11862 Domain of unknown function (DUF3382) 28 122 6.9E-17 T 23-04-2016 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal RPE_RS11815 22a75c1b1bb529b74290fe560d9ebf5c 349 Gene3D G3DSA:1.10.530.10 19 85 9.9E-8 T 23-04-2016 RPE_RS11815 22a75c1b1bb529b74290fe560d9ebf5c 349 SUPERFAMILY SSF53955 20 84 7.24E-9 T 23-04-2016 IPR023346 Lysozyme-like domain RPE_RS11815 22a75c1b1bb529b74290fe560d9ebf5c 349 Pfam PF01464 Transglycosylase SLT domain 24 75 8.6E-5 T 23-04-2016 IPR008258 Transglycosylase SLT domain 1 RPE_RS03255 d78fe84b29a3ecbb04c8a9e34a9881a2 281 Gene3D G3DSA:2.160.10.10 93 245 1.6E-53 T 23-04-2016 RPE_RS03255 d78fe84b29a3ecbb04c8a9e34a9881a2 281 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 118 170 2.2E-4 T 23-04-2016 IPR001451 Hexapeptide repeat RPE_RS03255 d78fe84b29a3ecbb04c8a9e34a9881a2 281 SUPERFAMILY SSF51161 8 263 1.94E-63 T 23-04-2016 IPR011004 Trimeric LpxA-like RPE_RS03255 d78fe84b29a3ecbb04c8a9e34a9881a2 281 Gene3D G3DSA:1.10.166.10 4 72 2.0E-27 T 23-04-2016 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 RPE_RS03255 d78fe84b29a3ecbb04c8a9e34a9881a2 281 PANTHER PTHR19136:SF52 17 280 2.3E-109 T 23-04-2016 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 RPE_RS03255 d78fe84b29a3ecbb04c8a9e34a9881a2 281 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 6 71 1.3E-23 T 23-04-2016 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 RPE_RS03255 d78fe84b29a3ecbb04c8a9e34a9881a2 281 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 6 280 4.1E-119 T 23-04-2016 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 RPE_RS03255 d78fe84b29a3ecbb04c8a9e34a9881a2 281 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 3 281 54.964 T 23-04-2016 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 RPE_RS03255 d78fe84b29a3ecbb04c8a9e34a9881a2 281 PANTHER PTHR19136 17 280 2.3E-109 T 23-04-2016 RPE_RS03255 d78fe84b29a3ecbb04c8a9e34a9881a2 281 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 179 214 4.7E-12 T 23-04-2016 IPR001451 Hexapeptide repeat RPE_RS17870 01d13be4e712b9d6e6a68d6b92003709 161 Gene3D G3DSA:3.100.10.10 32 151 2.3E-26 T 23-04-2016 RPE_RS17870 01d13be4e712b9d6e6a68d6b92003709 161 SUPERFAMILY SSF52080 5 148 9.94E-45 T 23-04-2016 IPR021131 Ribosomal protein L18e/L15P RPE_RS17870 01d13be4e712b9d6e6a68d6b92003709 161 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 27 149 1.0E-35 T 23-04-2016 IPR021131 Ribosomal protein L18e/L15P RPE_RS17870 01d13be4e712b9d6e6a68d6b92003709 161 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 151 21.261 T 23-04-2016 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 RPE_RS17870 01d13be4e712b9d6e6a68d6b92003709 161 PANTHER PTHR12934 1 151 2.2E-70 T 23-04-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 RPE_RS17870 01d13be4e712b9d6e6a68d6b92003709 161 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 148 1.2E-45 T 23-04-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 RPE_RS17870 01d13be4e712b9d6e6a68d6b92003709 161 ProSitePatterns PS00475 Ribosomal protein L15 signature. 115 145 - T 23-04-2016 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17810 b3059b6a873fd6dca9f6f9002ee0af40 402 Gene3D G3DSA:3.40.50.2300 29 157 3.4E-28 T 23-04-2016 RPE_RS17810 b3059b6a873fd6dca9f6f9002ee0af40 402 Gene3D G3DSA:3.40.50.2300 319 364 3.4E-28 T 23-04-2016 RPE_RS17810 b3059b6a873fd6dca9f6f9002ee0af40 402 PANTHER PTHR30483 1 401 2.5E-163 T 23-04-2016 RPE_RS17810 b3059b6a873fd6dca9f6f9002ee0af40 402 Gene3D G3DSA:3.40.50.2300 158 318 2.8E-15 T 23-04-2016 RPE_RS17810 b3059b6a873fd6dca9f6f9002ee0af40 402 SUPERFAMILY SSF53822 33 396 5.3E-63 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RPE_RS17810 b3059b6a873fd6dca9f6f9002ee0af40 402 Pfam PF13458 Periplasmic binding protein 33 389 3.2E-53 T 23-04-2016 IPR028081 Leucine-binding protein domain RPE_RS17810 b3059b6a873fd6dca9f6f9002ee0af40 402 PANTHER PTHR30483:SF11 1 401 2.5E-163 T 23-04-2016 RPE_RS06060 241dd662128434f713782b63b8cad13b 275 Gene3D G3DSA:3.40.50.150 76 272 1.3E-72 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS06060 241dd662128434f713782b63b8cad13b 275 SUPERFAMILY SSF47757 3 76 3.4E-20 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RPE_RS06060 241dd662128434f713782b63b8cad13b 275 Pfam PF01739 CheR methyltransferase, SAM binding domain 77 270 3.7E-68 T 23-04-2016 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal RPE_RS06060 241dd662128434f713782b63b8cad13b 275 Gene3D G3DSA:1.10.155.10 2 75 6.2E-24 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RPE_RS06060 241dd662128434f713782b63b8cad13b 275 PANTHER PTHR24422:SF13 1 275 2.1E-93 T 23-04-2016 RPE_RS06060 241dd662128434f713782b63b8cad13b 275 SMART SM00138 9 274 8.2E-118 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS06060 241dd662128434f713782b63b8cad13b 275 Pfam PF03705 CheR methyltransferase, all-alpha domain 11 61 2.1E-14 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RPE_RS06060 241dd662128434f713782b63b8cad13b 275 PANTHER PTHR24422 1 275 2.1E-93 T 23-04-2016 RPE_RS06060 241dd662128434f713782b63b8cad13b 275 PRINTS PR00996 Glutamate methyltransferase family signature 70 82 3.1E-44 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS06060 241dd662128434f713782b63b8cad13b 275 PRINTS PR00996 Glutamate methyltransferase family signature 111 131 3.1E-44 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS06060 241dd662128434f713782b63b8cad13b 275 PRINTS PR00996 Glutamate methyltransferase family signature 214 228 3.1E-44 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS06060 241dd662128434f713782b63b8cad13b 275 PRINTS PR00996 Glutamate methyltransferase family signature 146 162 3.1E-44 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS06060 241dd662128434f713782b63b8cad13b 275 PRINTS PR00996 Glutamate methyltransferase family signature 233 256 3.1E-44 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS06060 241dd662128434f713782b63b8cad13b 275 PRINTS PR00996 Glutamate methyltransferase family signature 31 44 3.1E-44 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS06060 241dd662128434f713782b63b8cad13b 275 PIRSF PIRSF000410 2 275 1.2E-101 T 23-04-2016 IPR026024 Chemotaxis protein methyltransferase CheR RPE_RS06060 241dd662128434f713782b63b8cad13b 275 SUPERFAMILY SSF53335 77 272 1.32E-57 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS11970 3671778dbb6de3e6a9f2278602c27f7c 382 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 336 355 - T 23-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RPE_RS11970 3671778dbb6de3e6a9f2278602c27f7c 382 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 124 136 - T 23-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RPE_RS11970 3671778dbb6de3e6a9f2278602c27f7c 382 Gene3D G3DSA:2.40.110.10 122 217 2.3E-38 T 23-04-2016 RPE_RS11970 3671778dbb6de3e6a9f2278602c27f7c 382 PANTHER PTHR10909:SF305 4 382 4.3E-186 T 23-04-2016 RPE_RS11970 3671778dbb6de3e6a9f2278602c27f7c 382 Gene3D G3DSA:1.20.140.10 218 379 2.8E-65 T 23-04-2016 RPE_RS11970 3671778dbb6de3e6a9f2278602c27f7c 382 PANTHER PTHR10909 4 382 4.3E-186 T 23-04-2016 RPE_RS11970 3671778dbb6de3e6a9f2278602c27f7c 382 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 118 2.0E-30 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS11970 3671778dbb6de3e6a9f2278602c27f7c 382 SUPERFAMILY SSF56645 4 241 6.41E-81 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RPE_RS11970 3671778dbb6de3e6a9f2278602c27f7c 382 SUPERFAMILY SSF47203 227 378 2.74E-56 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS11970 3671778dbb6de3e6a9f2278602c27f7c 382 Gene3D G3DSA:1.10.540.10 4 119 3.0E-40 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS11970 3671778dbb6de3e6a9f2278602c27f7c 382 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 215 5.5E-26 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RPE_RS11970 3671778dbb6de3e6a9f2278602c27f7c 382 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 230 377 3.0E-48 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS22635 9288b4dd114a46380ec583555c5da950 487 Gene3D G3DSA:3.40.50.1980 352 487 7.8E-66 T 23-04-2016 RPE_RS22635 9288b4dd114a46380ec583555c5da950 487 Gene3D G3DSA:3.40.50.1980 17 216 9.4E-74 T 23-04-2016 RPE_RS22635 9288b4dd114a46380ec583555c5da950 487 PANTHER PTHR33712 26 486 0.0 T 23-04-2016 RPE_RS22635 9288b4dd114a46380ec583555c5da950 487 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 157 171 - T 23-04-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 RPE_RS22635 9288b4dd114a46380ec583555c5da950 487 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 67 474 2.0E-109 T 23-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 RPE_RS22635 9288b4dd114a46380ec583555c5da950 487 PANTHER PTHR33712:SF4 26 486 0.0 T 23-04-2016 RPE_RS22635 9288b4dd114a46380ec583555c5da950 487 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 86 93 - T 23-04-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 RPE_RS22635 9288b4dd114a46380ec583555c5da950 487 TIGRFAM TIGR01282 nifD: nitrogenase molybdenum-iron protein alpha chain 20 486 4.9E-264 T 23-04-2016 IPR005972 Nitrogenase molybdenum-iron protein alpha chain GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 RPE_RS22635 9288b4dd114a46380ec583555c5da950 487 SUPERFAMILY SSF53807 33 486 5.23E-164 T 23-04-2016 RPE_RS22635 9288b4dd114a46380ec583555c5da950 487 TIGRFAM TIGR01862 N2-ase-Ialpha: nitrogenase component I, alpha chain 35 481 5.4E-190 T 23-04-2016 IPR010143 Nitrogenase component 1, alpha chain GO:0009399|GO:0016163|GO:0051536|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 RPE_RS22635 9288b4dd114a46380ec583555c5da950 487 Gene3D G3DSA:3.40.50.1980 219 326 1.8E-52 T 23-04-2016 RPE_RS18170 b65ba22ba99da602abb476ef3ee3b527 209 SUPERFAMILY SSF103039 4 196 6.15E-41 T 23-04-2016 IPR028976 CheC-like domain RPE_RS18170 b65ba22ba99da602abb476ef3ee3b527 209 Pfam PF13690 Chemotaxis phosphatase CheX 65 149 5.0E-7 T 23-04-2016 IPR028051 Chemotaxis phosphatase CheX-like domain KEGG: 00231+3.-.-.-|KEGG: 00563+3.-.-.-|KEGG: 00983+3.-.-.- RPE_RS18170 b65ba22ba99da602abb476ef3ee3b527 209 Gene3D G3DSA:3.40.1550.10 4 195 2.3E-45 T 23-04-2016 IPR028976 CheC-like domain RPE_RS13020 588353b8303d8fc15822f96771557ff4 799 Gene3D G3DSA:1.10.3700.10 136 252 3.9E-21 T 23-04-2016 IPR023157 AGR-C-984p-like domain RPE_RS13020 588353b8303d8fc15822f96771557ff4 799 Gene3D G3DSA:1.10.3700.10 553 767 1.0E-71 T 23-04-2016 IPR023157 AGR-C-984p-like domain RPE_RS13020 588353b8303d8fc15822f96771557ff4 799 Gene3D G3DSA:1.10.3700.10 277 432 1.5E-9 T 23-04-2016 IPR023157 AGR-C-984p-like domain RPE_RS13020 588353b8303d8fc15822f96771557ff4 799 Gene3D G3DSA:1.10.3700.10 1 135 4.3E-54 T 23-04-2016 IPR023157 AGR-C-984p-like domain RPE_RS13020 588353b8303d8fc15822f96771557ff4 799 Gene3D G3DSA:1.10.3700.10 436 552 1.2E-19 T 23-04-2016 IPR023157 AGR-C-984p-like domain RPE_RS13020 588353b8303d8fc15822f96771557ff4 799 SUPERFAMILY SSF158837 544 766 4.71E-57 T 23-04-2016 IPR023157 AGR-C-984p-like domain RPE_RS13020 588353b8303d8fc15822f96771557ff4 799 SUPERFAMILY SSF158837 1 134 1.31E-46 T 23-04-2016 IPR023157 AGR-C-984p-like domain RPE_RS13020 588353b8303d8fc15822f96771557ff4 799 SUPERFAMILY SSF158837 325 434 1.44E-8 T 23-04-2016 IPR023157 AGR-C-984p-like domain RPE_RS13020 588353b8303d8fc15822f96771557ff4 799 SUPERFAMILY SSF158837 135 259 3.27E-22 T 23-04-2016 IPR023157 AGR-C-984p-like domain RPE_RS13020 588353b8303d8fc15822f96771557ff4 799 Pfam PF06748 Protein of unknown function (DUF1217) 474 594 9.5E-16 T 23-04-2016 IPR010626 Protein of unknown function DUF1217 RPE_RS13020 588353b8303d8fc15822f96771557ff4 799 Pfam PF06748 Protein of unknown function (DUF1217) 61 167 6.9E-22 T 23-04-2016 IPR010626 Protein of unknown function DUF1217 RPE_RS13020 588353b8303d8fc15822f96771557ff4 799 Pfam PF06748 Protein of unknown function (DUF1217) 597 751 7.1E-47 T 23-04-2016 IPR010626 Protein of unknown function DUF1217 RPE_RS13020 588353b8303d8fc15822f96771557ff4 799 Pfam PF06748 Protein of unknown function (DUF1217) 367 486 1.5E-5 T 23-04-2016 IPR010626 Protein of unknown function DUF1217 RPE_RS13020 588353b8303d8fc15822f96771557ff4 799 SUPERFAMILY SSF158837 439 563 6.8E-21 T 23-04-2016 IPR023157 AGR-C-984p-like domain RPE_RS21865 3fa373395e8b335e1fed4924fb39cb8d 548 Pfam PF14362 Domain of unknown function (DUF4407) 18 421 2.2E-21 T 23-04-2016 IPR025519 Protein of unknown function DUF4407 RPE_RS20360 6136d3190cd6d1b8be148a57128a74f1 548 Gene3D G3DSA:1.10.3720.10 11 265 1.2E-33 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS20360 6136d3190cd6d1b8be148a57128a74f1 548 SUPERFAMILY SSF161098 10 261 2.24E-40 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS20360 6136d3190cd6d1b8be148a57128a74f1 548 SUPERFAMILY SSF161098 279 540 3.27E-35 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS20360 6136d3190cd6d1b8be148a57128a74f1 548 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 349 538 1.4E-6 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS20360 6136d3190cd6d1b8be148a57128a74f1 548 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 68 258 7.7E-15 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS20360 6136d3190cd6d1b8be148a57128a74f1 548 Gene3D G3DSA:1.10.3720.10 288 537 7.0E-28 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS20360 6136d3190cd6d1b8be148a57128a74f1 548 PANTHER PTHR30183:SF2 132 394 8.2E-132 T 23-04-2016 RPE_RS20360 6136d3190cd6d1b8be148a57128a74f1 548 PANTHER PTHR30183:SF2 1 116 8.2E-132 T 23-04-2016 RPE_RS20360 6136d3190cd6d1b8be148a57128a74f1 548 PANTHER PTHR30183:SF2 411 547 8.2E-132 T 23-04-2016 RPE_RS20360 6136d3190cd6d1b8be148a57128a74f1 548 PANTHER PTHR30183 132 394 8.2E-132 T 23-04-2016 RPE_RS20360 6136d3190cd6d1b8be148a57128a74f1 548 PANTHER PTHR30183 1 116 8.2E-132 T 23-04-2016 RPE_RS20360 6136d3190cd6d1b8be148a57128a74f1 548 PANTHER PTHR30183 411 547 8.2E-132 T 23-04-2016 RPE_RS08260 b7272d285f5b7f4606a3bf7960c1c542 435 PANTHER PTHR11444 4 427 2.1E-139 T 23-04-2016 IPR000362 Fumarate lyase family RPE_RS08260 b7272d285f5b7f4606a3bf7960c1c542 435 PANTHER PTHR11444:SF2 4 427 2.1E-139 T 23-04-2016 RPE_RS08260 b7272d285f5b7f4606a3bf7960c1c542 435 PRINTS PR00145 Argininosuccinate lyase family signature 219 243 5.4E-5 T 23-04-2016 RPE_RS08260 b7272d285f5b7f4606a3bf7960c1c542 435 PRINTS PR00145 Argininosuccinate lyase family signature 264 280 5.4E-5 T 23-04-2016 RPE_RS08260 b7272d285f5b7f4606a3bf7960c1c542 435 PRINTS PR00145 Argininosuccinate lyase family signature 131 151 5.4E-5 T 23-04-2016 RPE_RS08260 b7272d285f5b7f4606a3bf7960c1c542 435 Gene3D G3DSA:1.10.40.30 360 432 2.2E-33 T 23-04-2016 RPE_RS08260 b7272d285f5b7f4606a3bf7960c1c542 435 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 1 432 2.0E-145 T 23-04-2016 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 RPE_RS08260 b7272d285f5b7f4606a3bf7960c1c542 435 Gene3D G3DSA:1.10.275.10 2 93 4.2E-30 T 23-04-2016 IPR024083 Fumarase/histidase, N-terminal RPE_RS08260 b7272d285f5b7f4606a3bf7960c1c542 435 Pfam PF00206 Lyase 8 287 6.1E-46 T 23-04-2016 IPR022761 Fumarate lyase, N-terminal RPE_RS08260 b7272d285f5b7f4606a3bf7960c1c542 435 Gene3D G3DSA:1.20.200.10 94 359 7.5E-82 T 23-04-2016 RPE_RS08260 b7272d285f5b7f4606a3bf7960c1c542 435 SMART SM00998 352 432 5.3E-34 T 23-04-2016 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 RPE_RS08260 b7272d285f5b7f4606a3bf7960c1c542 435 SUPERFAMILY SSF48557 3 432 5.34E-123 T 23-04-2016 IPR008948 L-Aspartase-like GO:0003824 RPE_RS08260 b7272d285f5b7f4606a3bf7960c1c542 435 Pfam PF10397 Adenylosuccinate lyase C-terminus 353 431 1.6E-23 T 23-04-2016 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 RPE_RS08260 b7272d285f5b7f4606a3bf7960c1c542 435 PRINTS PR00149 Fumarate lyase superfamily signature 91 109 7.7E-23 T 23-04-2016 IPR000362 Fumarate lyase family RPE_RS08260 b7272d285f5b7f4606a3bf7960c1c542 435 PRINTS PR00149 Fumarate lyase superfamily signature 264 280 7.7E-23 T 23-04-2016 IPR000362 Fumarate lyase family RPE_RS08260 b7272d285f5b7f4606a3bf7960c1c542 435 PRINTS PR00149 Fumarate lyase superfamily signature 136 154 7.7E-23 T 23-04-2016 IPR000362 Fumarate lyase family RPE_RS08260 b7272d285f5b7f4606a3bf7960c1c542 435 PRINTS PR00149 Fumarate lyase superfamily signature 219 246 7.7E-23 T 23-04-2016 IPR000362 Fumarate lyase family RPE_RS08260 b7272d285f5b7f4606a3bf7960c1c542 435 ProSitePatterns PS00163 Fumarate lyases signature. 264 273 - T 23-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 RPE_RS13640 d1930b0e0dd99477435b0f1ce4e2ad1e 181 Gene3D G3DSA:1.10.10.10 106 167 1.3E-12 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS13640 d1930b0e0dd99477435b0f1ce4e2ad1e 181 SUPERFAMILY SSF88659 91 168 6.54E-15 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS13640 d1930b0e0dd99477435b0f1ce4e2ad1e 181 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 24 162 5.8E-19 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS13640 d1930b0e0dd99477435b0f1ce4e2ad1e 181 Gene3D G3DSA:1.10.1740.10 23 97 5.9E-5 T 23-04-2016 RPE_RS13640 d1930b0e0dd99477435b0f1ce4e2ad1e 181 PANTHER PTHR30173:SF30 8 169 7.6E-23 T 23-04-2016 RPE_RS13640 d1930b0e0dd99477435b0f1ce4e2ad1e 181 SUPERFAMILY SSF88946 9 97 5.89E-7 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS13640 d1930b0e0dd99477435b0f1ce4e2ad1e 181 Pfam PF08281 Sigma-70, region 4 109 159 5.4E-12 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS13640 d1930b0e0dd99477435b0f1ce4e2ad1e 181 PANTHER PTHR30173 8 169 7.6E-23 T 23-04-2016 RPE_RS18690 8e98d2f54f1e842c0cac1981dff20327 100 Pfam PF00547 Urease, gamma subunit 1 99 4.2E-47 T 23-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RPE_RS18690 8e98d2f54f1e842c0cac1981dff20327 100 PIRSF PIRSF001223 1 100 3.3E-50 T 23-04-2016 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RPE_RS18690 8e98d2f54f1e842c0cac1981dff20327 100 Gene3D G3DSA:3.30.280.10 1 100 6.8E-49 T 23-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RPE_RS18690 8e98d2f54f1e842c0cac1981dff20327 100 PANTHER PTHR33569 2 100 5.4E-42 T 23-04-2016 RPE_RS18690 8e98d2f54f1e842c0cac1981dff20327 100 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 9 99 5.0E-47 T 23-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RPE_RS18690 8e98d2f54f1e842c0cac1981dff20327 100 Hamap MF_00739 Urease subunit gamma [ureA]. 1 100 33.458 T 23-04-2016 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RPE_RS18690 8e98d2f54f1e842c0cac1981dff20327 100 PANTHER PTHR33569:SF1 2 100 5.4E-42 T 23-04-2016 RPE_RS18690 8e98d2f54f1e842c0cac1981dff20327 100 SUPERFAMILY SSF54111 1 100 7.06E-45 T 23-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RPE_RS18690 8e98d2f54f1e842c0cac1981dff20327 100 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 1 100 2.8E-47 T 23-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 RPE_RS05065 b8057d8a273a4f75875d10789e9e9595 3113 SUPERFAMILY SSF51120 2931 3063 1.96E-12 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RPE_RS05065 b8057d8a273a4f75875d10789e9e9595 3113 SUPERFAMILY SSF51120 973 1103 1.48E-14 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RPE_RS05065 b8057d8a273a4f75875d10789e9e9595 3113 SUPERFAMILY SSF48113 2647 2732 4.94E-119 T 23-04-2016 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 RPE_RS05065 b8057d8a273a4f75875d10789e9e9595 3113 SUPERFAMILY SSF48113 2093 2278 4.94E-119 T 23-04-2016 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 RPE_RS05065 b8057d8a273a4f75875d10789e9e9595 3113 SUPERFAMILY SSF48113 2332 2614 4.94E-119 T 23-04-2016 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 RPE_RS05065 b8057d8a273a4f75875d10789e9e9595 3113 Gene3D G3DSA:2.150.10.10 976 1104 3.3E-18 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RPE_RS05065 b8057d8a273a4f75875d10789e9e9595 3113 Gene3D G3DSA:2.150.10.10 2894 3062 2.9E-19 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RPE_RS05065 b8057d8a273a4f75875d10789e9e9595 3113 PANTHER PTHR11475 2346 2482 1.1E-43 T 23-04-2016 RPE_RS05065 b8057d8a273a4f75875d10789e9e9595 3113 PANTHER PTHR11475 2643 2728 1.1E-43 T 23-04-2016 RPE_RS05065 b8057d8a273a4f75875d10789e9e9595 3113 PANTHER PTHR11475 2500 2563 1.1E-43 T 23-04-2016 RPE_RS05065 b8057d8a273a4f75875d10789e9e9595 3113 PANTHER PTHR11475 2581 2610 1.1E-43 T 23-04-2016 RPE_RS05065 b8057d8a273a4f75875d10789e9e9595 3113 Pfam PF03098 Animal haem peroxidase 2095 2727 1.2E-79 T 23-04-2016 IPR019791 Haem peroxidase, animal RPE_RS05065 b8057d8a273a4f75875d10789e9e9595 3113 Pfam PF03098 Animal haem peroxidase 63 321 9.8E-8 T 23-04-2016 IPR019791 Haem peroxidase, animal RPE_RS05065 b8057d8a273a4f75875d10789e9e9595 3113 Pfam PF03098 Animal haem peroxidase 479 883 7.9E-52 T 23-04-2016 IPR019791 Haem peroxidase, animal RPE_RS05065 b8057d8a273a4f75875d10789e9e9595 3113 PANTHER PTHR11475:SF4 2346 2482 1.1E-43 T 23-04-2016 RPE_RS05065 b8057d8a273a4f75875d10789e9e9595 3113 PANTHER PTHR11475:SF4 2643 2728 1.1E-43 T 23-04-2016 RPE_RS05065 b8057d8a273a4f75875d10789e9e9595 3113 PANTHER PTHR11475:SF4 2500 2563 1.1E-43 T 23-04-2016 RPE_RS05065 b8057d8a273a4f75875d10789e9e9595 3113 PANTHER PTHR11475:SF4 2581 2610 1.1E-43 T 23-04-2016 RPE_RS05065 b8057d8a273a4f75875d10789e9e9595 3113 SUPERFAMILY SSF51120 2819 2939 3.49E-22 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RPE_RS05065 b8057d8a273a4f75875d10789e9e9595 3113 Gene3D G3DSA:1.10.640.10 2647 2732 1.0E-132 T 23-04-2016 IPR019791 Haem peroxidase, animal RPE_RS05065 b8057d8a273a4f75875d10789e9e9595 3113 Gene3D G3DSA:1.10.640.10 811 913 6.9E-121 T 23-04-2016 IPR019791 Haem peroxidase, animal RPE_RS05065 b8057d8a273a4f75875d10789e9e9595 3113 Gene3D G3DSA:1.10.640.10 558 758 6.9E-121 T 23-04-2016 IPR019791 Haem peroxidase, animal RPE_RS05065 b8057d8a273a4f75875d10789e9e9595 3113 Gene3D G3DSA:1.10.640.10 2218 2278 1.0E-132 T 23-04-2016 IPR019791 Haem peroxidase, animal RPE_RS05065 b8057d8a273a4f75875d10789e9e9595 3113 Gene3D G3DSA:1.10.640.10 235 325 6.9E-121 T 23-04-2016 IPR019791 Haem peroxidase, animal RPE_RS05065 b8057d8a273a4f75875d10789e9e9595 3113 Gene3D G3DSA:1.10.640.10 462 519 6.9E-121 T 23-04-2016 IPR019791 Haem peroxidase, animal RPE_RS05065 b8057d8a273a4f75875d10789e9e9595 3113 Gene3D G3DSA:1.10.640.10 2332 2614 1.0E-132 T 23-04-2016 IPR019791 Haem peroxidase, animal RPE_RS05065 b8057d8a273a4f75875d10789e9e9595 3113 Gene3D G3DSA:1.10.640.10 369 386 6.9E-121 T 23-04-2016 IPR019791 Haem peroxidase, animal RPE_RS05065 b8057d8a273a4f75875d10789e9e9595 3113 SUPERFAMILY SSF48113 59 144 3.26E-111 T 23-04-2016 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 RPE_RS05065 b8057d8a273a4f75875d10789e9e9595 3113 SUPERFAMILY SSF48113 218 345 3.26E-111 T 23-04-2016 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 RPE_RS05065 b8057d8a273a4f75875d10789e9e9595 3113 SUPERFAMILY SSF48113 811 888 3.26E-111 T 23-04-2016 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 RPE_RS05065 b8057d8a273a4f75875d10789e9e9595 3113 SUPERFAMILY SSF48113 462 519 3.26E-111 T 23-04-2016 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 RPE_RS05065 b8057d8a273a4f75875d10789e9e9595 3113 SUPERFAMILY SSF48113 558 758 3.26E-111 T 23-04-2016 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 RPE_RS17805 31c7a0065744789756e4e532ffa56ac0 360 PANTHER PTHR35527:SF2 4 360 6.7E-152 T 23-04-2016 RPE_RS17805 31c7a0065744789756e4e532ffa56ac0 360 SUPERFAMILY SSF56235 32 328 8.49E-97 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RPE_RS17805 31c7a0065744789756e4e532ffa56ac0 360 Pfam PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family 32 319 2.4E-44 T 23-04-2016 IPR029132 Choloylglycine hydrolase/NAAA C-terminal RPE_RS17805 31c7a0065744789756e4e532ffa56ac0 360 PANTHER PTHR35527 4 360 6.7E-152 T 23-04-2016 RPE_RS17805 31c7a0065744789756e4e532ffa56ac0 360 Gene3D G3DSA:3.60.60.10 32 335 7.7E-103 T 23-04-2016 IPR003199 Choloylglycine hydrolase/Peptidase C59 family GO:0016811 RPE_RS21160 b239c11e5484d8178327cc53c3966d3e 271 PANTHER PTHR24322 182 210 3.9E-29 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS21160 b239c11e5484d8178327cc53c3966d3e 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 141 157 1.1E-19 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS21160 b239c11e5484d8178327cc53c3966d3e 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 1.1E-19 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS21160 b239c11e5484d8178327cc53c3966d3e 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 201 1.1E-19 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS21160 b239c11e5484d8178327cc53c3966d3e 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 232 252 1.1E-19 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS21160 b239c11e5484d8178327cc53c3966d3e 271 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 22 269 7.1E-40 T 23-04-2016 RPE_RS21160 b239c11e5484d8178327cc53c3966d3e 271 Gene3D G3DSA:3.40.50.720 4 270 1.5E-60 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS21160 b239c11e5484d8178327cc53c3966d3e 271 PANTHER PTHR24322 14 151 3.9E-29 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS21160 b239c11e5484d8178327cc53c3966d3e 271 PANTHER PTHR24322:SF242 182 210 3.9E-29 T 23-04-2016 RPE_RS21160 b239c11e5484d8178327cc53c3966d3e 271 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 155 3.2E-6 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS21160 b239c11e5484d8178327cc53c3966d3e 271 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 182 201 3.2E-6 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS21160 b239c11e5484d8178327cc53c3966d3e 271 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 3.2E-6 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS21160 b239c11e5484d8178327cc53c3966d3e 271 SUPERFAMILY SSF51735 9 270 9.48E-57 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS21160 b239c11e5484d8178327cc53c3966d3e 271 PANTHER PTHR24322:SF242 14 151 3.9E-29 T 23-04-2016 RPE_RS01605 e278234d34557b07365983cd3f294407 421 Pfam PF00919 Uncharacterized protein family UPF0004 3 89 1.9E-14 T 23-04-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 RPE_RS01605 e278234d34557b07365983cd3f294407 421 Gene3D G3DSA:3.80.30.20 142 367 1.0E-61 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RPE_RS01605 e278234d34557b07365983cd3f294407 421 PANTHER PTHR11918 1 411 1.5E-112 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein RPE_RS01605 e278234d34557b07365983cd3f294407 421 TIGRFAM TIGR01579 MiaB-like-C: MiaB-like tRNA modifying enzyme 6 406 4.6E-123 T 23-04-2016 IPR006467 MiaB-like tRNA modifying enzyme GO:0016740 RPE_RS01605 e278234d34557b07365983cd3f294407 421 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 146 166 - T 23-04-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 RPE_RS01605 e278234d34557b07365983cd3f294407 421 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 3 417 1.5E-93 T 23-04-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 RPE_RS01605 e278234d34557b07365983cd3f294407 421 PANTHER PTHR11918:SF45 1 411 1.5E-112 T 23-04-2016 RPE_RS01605 e278234d34557b07365983cd3f294407 421 SUPERFAMILY SSF102114 142 361 1.07E-50 T 23-04-2016 RPE_RS01605 e278234d34557b07365983cd3f294407 421 SMART SM00729 142 360 1.1E-53 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RPE_RS01605 e278234d34557b07365983cd3f294407 421 Pfam PF04055 Radical SAM superfamily 147 319 6.0E-22 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RPE_RS19725 fd9e0e6607df5d05683bb6788bb036a3 206 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 56 185 7.7E-12 T 23-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RPE_RS19725 fd9e0e6607df5d05683bb6788bb036a3 206 SUPERFAMILY SSF55846 42 197 3.66E-19 T 23-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RPE_RS19725 fd9e0e6607df5d05683bb6788bb036a3 206 SMART SM00644 46 194 0.0019 T 23-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RPE_RS19725 fd9e0e6607df5d05683bb6788bb036a3 206 Gene3D G3DSA:3.40.80.10 55 188 3.6E-20 T 23-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RPE_RS14460 96d19e0caccd197c1be6e7e7cc5c3cf1 297 PANTHER PTHR30346 3 296 2.0E-88 T 23-04-2016 RPE_RS14460 96d19e0caccd197c1be6e7e7cc5c3cf1 297 SUPERFAMILY SSF53850 94 296 8.69E-32 T 23-04-2016 RPE_RS14460 96d19e0caccd197c1be6e7e7cc5c3cf1 297 Gene3D G3DSA:3.40.190.10 94 177 1.6E-25 T 23-04-2016 RPE_RS14460 96d19e0caccd197c1be6e7e7cc5c3cf1 297 Gene3D G3DSA:1.10.10.10 2 81 7.0E-29 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS14460 96d19e0caccd197c1be6e7e7cc5c3cf1 297 PANTHER PTHR30346:SF0 3 296 2.0E-88 T 23-04-2016 RPE_RS14460 96d19e0caccd197c1be6e7e7cc5c3cf1 297 SUPERFAMILY SSF46785 4 86 1.85E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS14460 96d19e0caccd197c1be6e7e7cc5c3cf1 297 Pfam PF03466 LysR substrate binding domain 94 295 3.4E-34 T 23-04-2016 IPR005119 LysR, substrate-binding RPE_RS14460 96d19e0caccd197c1be6e7e7cc5c3cf1 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.3E-9 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS14460 96d19e0caccd197c1be6e7e7cc5c3cf1 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.3E-9 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS14460 96d19e0caccd197c1be6e7e7cc5c3cf1 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.3E-9 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS14460 96d19e0caccd197c1be6e7e7cc5c3cf1 297 Gene3D G3DSA:3.40.190.10 178 265 1.2E-29 T 23-04-2016 RPE_RS14460 96d19e0caccd197c1be6e7e7cc5c3cf1 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 4.1E-22 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS08470 a06ce9a8be12966dc91aa629fc319e5c 1034 SUPERFAMILY SSF82693 42 131 1.46E-24 T 23-04-2016 RPE_RS08470 a06ce9a8be12966dc91aa629fc319e5c 1034 SUPERFAMILY SSF82693 267 323 2.38E-19 T 23-04-2016 RPE_RS08470 a06ce9a8be12966dc91aa629fc319e5c 1034 SUPERFAMILY SSF82714 183 264 9.02E-18 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS08470 a06ce9a8be12966dc91aa629fc319e5c 1034 Gene3D G3DSA:3.30.70.1430 42 141 1.0E-28 T 23-04-2016 RPE_RS08470 a06ce9a8be12966dc91aa629fc319e5c 1034 Gene3D G3DSA:3.30.70.1430 554 649 6.4E-15 T 23-04-2016 RPE_RS08470 a06ce9a8be12966dc91aa629fc319e5c 1034 SUPERFAMILY SSF82866 781 1003 7.85E-41 T 23-04-2016 RPE_RS08470 a06ce9a8be12966dc91aa629fc319e5c 1034 Pfam PF00873 AcrB/AcrD/AcrF family 4 1002 4.7E-273 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS08470 a06ce9a8be12966dc91aa629fc319e5c 1034 Gene3D G3DSA:3.30.70.1440 650 696 2.7E-11 T 23-04-2016 RPE_RS08470 a06ce9a8be12966dc91aa629fc319e5c 1034 Gene3D G3DSA:3.30.70.1440 793 819 2.7E-11 T 23-04-2016 RPE_RS08470 a06ce9a8be12966dc91aa629fc319e5c 1034 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 3.9E-80 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS08470 a06ce9a8be12966dc91aa629fc319e5c 1034 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 3.9E-80 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS08470 a06ce9a8be12966dc91aa629fc319e5c 1034 PRINTS PR00702 Acriflavin resistance protein family signature 539 556 3.9E-80 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS08470 a06ce9a8be12966dc91aa629fc319e5c 1034 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 3.9E-80 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS08470 a06ce9a8be12966dc91aa629fc319e5c 1034 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 3.9E-80 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS08470 a06ce9a8be12966dc91aa629fc319e5c 1034 PRINTS PR00702 Acriflavin resistance protein family signature 602 616 3.9E-80 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS08470 a06ce9a8be12966dc91aa629fc319e5c 1034 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 3.9E-80 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS08470 a06ce9a8be12966dc91aa629fc319e5c 1034 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 3.9E-80 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS08470 a06ce9a8be12966dc91aa629fc319e5c 1034 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 3.9E-80 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS08470 a06ce9a8be12966dc91aa629fc319e5c 1034 Gene3D G3DSA:3.30.2090.10 183 264 3.9E-20 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS08470 a06ce9a8be12966dc91aa629fc319e5c 1034 PANTHER PTHR32063:SF28 1 1023 0.0 T 23-04-2016 RPE_RS08470 a06ce9a8be12966dc91aa629fc319e5c 1034 Gene3D G3DSA:1.20.1640.10 820 1007 9.5E-43 T 23-04-2016 RPE_RS08470 a06ce9a8be12966dc91aa629fc319e5c 1034 PANTHER PTHR32063 1 1023 0.0 T 23-04-2016 RPE_RS08470 a06ce9a8be12966dc91aa629fc319e5c 1034 Gene3D G3DSA:1.10.3850.10 275 491 1.7E-57 T 23-04-2016 RPE_RS08470 a06ce9a8be12966dc91aa629fc319e5c 1034 SUPERFAMILY SSF82714 698 782 1.44E-19 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS08470 a06ce9a8be12966dc91aa629fc319e5c 1034 SUPERFAMILY SSF82866 291 490 3.92E-48 T 23-04-2016 RPE_RS08470 a06ce9a8be12966dc91aa629fc319e5c 1034 Gene3D G3DSA:3.30.2090.10 697 786 2.9E-22 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS08470 a06ce9a8be12966dc91aa629fc319e5c 1034 SUPERFAMILY SSF82693 137 181 2.38E-19 T 23-04-2016 RPE_RS08470 a06ce9a8be12966dc91aa629fc319e5c 1034 SUPERFAMILY SSF82693 552 649 4.45E-21 T 23-04-2016 RPE_RS22630 81d39f5520d25accb37866909595d432 518 Pfam PF11844 Domain of unknown function (DUF3364) 1 56 1.3E-22 T 23-04-2016 IPR024564 Nitrogenase molybdenum-iron protein beta chain, N-terminal KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 RPE_RS22630 81d39f5520d25accb37866909595d432 518 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 88 95 - T 23-04-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 RPE_RS22630 81d39f5520d25accb37866909595d432 518 Gene3D G3DSA:3.40.50.1980 349 473 2.4E-54 T 23-04-2016 RPE_RS22630 81d39f5520d25accb37866909595d432 518 SUPERFAMILY SSF53807 3 506 1.21E-166 T 23-04-2016 RPE_RS22630 81d39f5520d25accb37866909595d432 518 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 151 165 - T 23-04-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 RPE_RS22630 81d39f5520d25accb37866909595d432 518 PANTHER PTHR33712 29 260 4.8E-206 T 23-04-2016 RPE_RS22630 81d39f5520d25accb37866909595d432 518 PANTHER PTHR33712 278 504 4.8E-206 T 23-04-2016 RPE_RS22630 81d39f5520d25accb37866909595d432 518 PANTHER PTHR33712:SF7 29 260 4.8E-206 T 23-04-2016 RPE_RS22630 81d39f5520d25accb37866909595d432 518 PANTHER PTHR33712:SF7 278 504 4.8E-206 T 23-04-2016 RPE_RS22630 81d39f5520d25accb37866909595d432 518 Gene3D G3DSA:3.40.50.1980 70 212 1.9E-53 T 23-04-2016 RPE_RS22630 81d39f5520d25accb37866909595d432 518 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 70 495 1.8E-119 T 23-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 RPE_RS22630 81d39f5520d25accb37866909595d432 518 TIGRFAM TIGR01286 nifK: nitrogenase molybdenum-iron protein beta chain 2 518 3.3E-253 T 23-04-2016 IPR005976 Nitrogenase molybdenum-iron protein beta chain GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 RPE_RS22630 81d39f5520d25accb37866909595d432 518 Gene3D G3DSA:3.40.50.1980 220 323 1.7E-36 T 23-04-2016 RPE_RS18145 136c40bcb4d527133c826c3438726e51 295 Gene3D G3DSA:3.40.50.1820 28 295 8.2E-42 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS18145 136c40bcb4d527133c826c3438726e51 295 SUPERFAMILY SSF53474 30 295 7.42E-41 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS18145 136c40bcb4d527133c826c3438726e51 295 PANTHER PTHR10992 30 171 1.0E-26 T 23-04-2016 RPE_RS18145 136c40bcb4d527133c826c3438726e51 295 PANTHER PTHR10992 195 295 1.0E-26 T 23-04-2016 RPE_RS18145 136c40bcb4d527133c826c3438726e51 295 Pfam PF12697 Alpha/beta hydrolase family 38 288 1.7E-14 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS09370 d614d5a1efb319a3395f2dda211bae81 467 SUPERFAMILY SSF53187 7 207 4.1E-59 T 23-04-2016 RPE_RS09370 d614d5a1efb319a3395f2dda211bae81 467 SUPERFAMILY SSF53187 378 465 4.1E-59 T 23-04-2016 RPE_RS09370 d614d5a1efb319a3395f2dda211bae81 467 Pfam PF01546 Peptidase family M20/M25/M40 88 461 1.9E-33 T 23-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 RPE_RS09370 d614d5a1efb319a3395f2dda211bae81 467 Gene3D G3DSA:3.40.630.10 8 201 9.4E-60 T 23-04-2016 RPE_RS09370 d614d5a1efb319a3395f2dda211bae81 467 Gene3D G3DSA:3.40.630.10 377 465 9.4E-60 T 23-04-2016 RPE_RS09370 d614d5a1efb319a3395f2dda211bae81 467 Gene3D G3DSA:3.30.70.360 207 372 2.1E-54 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RPE_RS09370 d614d5a1efb319a3395f2dda211bae81 467 PANTHER PTHR11014:SF72 5 276 1.3E-136 T 23-04-2016 RPE_RS09370 d614d5a1efb319a3395f2dda211bae81 467 PANTHER PTHR11014:SF72 294 467 1.3E-136 T 23-04-2016 RPE_RS09370 d614d5a1efb319a3395f2dda211bae81 467 Pfam PF07687 Peptidase dimerisation domain 205 364 1.5E-22 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RPE_RS09370 d614d5a1efb319a3395f2dda211bae81 467 PANTHER PTHR11014 5 276 1.3E-136 T 23-04-2016 RPE_RS09370 d614d5a1efb319a3395f2dda211bae81 467 PANTHER PTHR11014 294 467 1.3E-136 T 23-04-2016 RPE_RS17230 8b6b2411b076a64c494be555266b9208 99 ProSitePatterns PS00151 Acylphosphatase signature 2. 34 50 - T 23-04-2016 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 RPE_RS17230 8b6b2411b076a64c494be555266b9208 99 Pfam PF00708 Acylphosphatase 8 80 7.1E-20 T 23-04-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 RPE_RS17230 8b6b2411b076a64c494be555266b9208 99 PANTHER PTHR10029 11 71 3.0E-24 T 23-04-2016 RPE_RS17230 8b6b2411b076a64c494be555266b9208 99 Gene3D G3DSA:3.30.70.100 8 83 3.2E-24 T 23-04-2016 RPE_RS17230 8b6b2411b076a64c494be555266b9208 99 SUPERFAMILY SSF54975 6 81 6.54E-23 T 23-04-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 RPE_RS12690 60413df374693e167356db11e5f55195 691 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 106 118 - T 23-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 RPE_RS12690 60413df374693e167356db11e5f55195 691 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 91 130 3.8E-18 T 23-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 RPE_RS12690 60413df374693e167356db11e5f55195 691 PANTHER PTHR11615:SF115 3 323 9.7E-291 T 23-04-2016 RPE_RS12690 60413df374693e167356db11e5f55195 691 PANTHER PTHR11615:SF115 348 680 9.7E-291 T 23-04-2016 RPE_RS12690 60413df374693e167356db11e5f55195 691 Pfam PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal 632 678 1.6E-15 T 23-04-2016 IPR015405 NADH-quinone oxidoreductase, chain G, C-terminal GO:0016651|GO:0051536|GO:0055114 RPE_RS12690 60413df374693e167356db11e5f55195 691 Gene3D G3DSA:3.10.20.30 3 53 1.3E-6 T 23-04-2016 IPR012675 Beta-grasp domain RPE_RS12690 60413df374693e167356db11e5f55195 691 PANTHER PTHR11615 3 323 9.7E-291 T 23-04-2016 RPE_RS12690 60413df374693e167356db11e5f55195 691 PANTHER PTHR11615 348 680 9.7E-291 T 23-04-2016 RPE_RS12690 60413df374693e167356db11e5f55195 691 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 2 68 7.4E-14 T 23-04-2016 RPE_RS12690 60413df374693e167356db11e5f55195 691 SUPERFAMILY SSF54292 1 68 4.26E-19 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RPE_RS12690 60413df374693e167356db11e5f55195 691 SUPERFAMILY SSF53706 221 632 1.44E-98 T 23-04-2016 RPE_RS12690 60413df374693e167356db11e5f55195 691 Gene3D G3DSA:3.40.50.740 279 414 1.6E-47 T 23-04-2016 RPE_RS12690 60413df374693e167356db11e5f55195 691 Gene3D G3DSA:3.40.50.740 502 630 1.6E-47 T 23-04-2016 RPE_RS12690 60413df374693e167356db11e5f55195 691 Pfam PF00384 Molybdopterin oxidoreductase 279 601 5.3E-71 T 23-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 RPE_RS12690 60413df374693e167356db11e5f55195 691 SMART SM00929 91 131 2.0E-22 T 23-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 RPE_RS12690 60413df374693e167356db11e5f55195 691 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 31 48 - T 23-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 RPE_RS12690 60413df374693e167356db11e5f55195 691 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 5 599 8.0E-219 T 23-04-2016 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 RPE_RS12690 60413df374693e167356db11e5f55195 691 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 153 163 - T 23-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 RPE_RS12690 60413df374693e167356db11e5f55195 691 SUPERFAMILY SSF54862 84 219 3.35E-36 T 23-04-2016 RPE_RS12720 f0bc64e0945c58ce7f4f310ee73dc546 501 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 7 486 1.2E-193 T 23-04-2016 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 RPE_RS12720 f0bc64e0945c58ce7f4f310ee73dc546 501 Pfam PF00361 Proton-conducting membrane transporter 133 420 1.8E-92 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RPE_RS12720 f0bc64e0945c58ce7f4f310ee73dc546 501 PANTHER PTHR22773:SF40 1 488 5.3E-219 T 23-04-2016 RPE_RS12720 f0bc64e0945c58ce7f4f310ee73dc546 501 PANTHER PTHR22773 1 488 5.3E-219 T 23-04-2016 RPE_RS12720 f0bc64e0945c58ce7f4f310ee73dc546 501 Pfam PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus 72 128 5.2E-7 T 23-04-2016 IPR000260 NADH:ubiquinone oxidoreductase chain 4, N-terminal GO:0006120|GO:0055114 KEGG: 00190+1.6.5.3|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-5083|MetaCyc: PWY-6692 RPE_RS12720 f0bc64e0945c58ce7f4f310ee73dc546 501 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 378 404 1.2E-49 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RPE_RS12720 f0bc64e0945c58ce7f4f310ee73dc546 501 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 139 158 1.2E-49 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RPE_RS12720 f0bc64e0945c58ce7f4f310ee73dc546 501 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 238 262 1.2E-49 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RPE_RS12720 f0bc64e0945c58ce7f4f310ee73dc546 501 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 326 345 1.2E-49 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RPE_RS12720 f0bc64e0945c58ce7f4f310ee73dc546 501 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 169 193 1.2E-49 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RPE_RS05470 37d2fdbe96be11f2ff9aecd9c7a58f6d 337 PANTHER PTHR10366 2 335 6.0E-150 T 23-04-2016 RPE_RS05470 37d2fdbe96be11f2ff9aecd9c7a58f6d 337 Gene3D G3DSA:3.40.50.720 1 178 2.9E-57 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS05470 37d2fdbe96be11f2ff9aecd9c7a58f6d 337 SUPERFAMILY SSF51735 1 334 4.09E-97 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS05470 37d2fdbe96be11f2ff9aecd9c7a58f6d 337 PANTHER PTHR10366:SF39 2 335 6.0E-150 T 23-04-2016 RPE_RS05470 37d2fdbe96be11f2ff9aecd9c7a58f6d 337 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 322 5.3E-61 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS05470 37d2fdbe96be11f2ff9aecd9c7a58f6d 337 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 3 333 5.8E-135 T 23-04-2016 IPR005886 UDP-glucose 4-epimerase GalE GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|UniPathway: UPA00214 RPE_RS05470 37d2fdbe96be11f2ff9aecd9c7a58f6d 337 Gene3D G3DSA:3.90.25.10 179 335 2.1E-51 T 23-04-2016 RPE_RS19230 79f0482a6c21445d7dc3144c79cf9d6c 99 PANTHER PTHR33175:SF1 5 99 2.0E-35 T 23-04-2016 RPE_RS19230 79f0482a6c21445d7dc3144c79cf9d6c 99 Pfam PF00216 Bacterial DNA-binding protein 5 99 1.8E-20 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RPE_RS19230 79f0482a6c21445d7dc3144c79cf9d6c 99 SUPERFAMILY SSF47729 5 99 6.18E-20 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RPE_RS19230 79f0482a6c21445d7dc3144c79cf9d6c 99 Gene3D G3DSA:4.10.520.10 5 99 5.3E-19 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RPE_RS19230 79f0482a6c21445d7dc3144c79cf9d6c 99 SMART SM00411 5 99 2.4E-5 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RPE_RS19230 79f0482a6c21445d7dc3144c79cf9d6c 99 PANTHER PTHR33175 5 99 2.0E-35 T 23-04-2016 RPE_RS01035 bc131d9f50c19eb7553608ab2d40eaef 351 PANTHER PTHR30473:SF1 27 340 1.8E-155 T 23-04-2016 RPE_RS01035 bc131d9f50c19eb7553608ab2d40eaef 351 Gene3D G3DSA:3.40.50.300 136 340 5.9E-86 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01035 bc131d9f50c19eb7553608ab2d40eaef 351 SUPERFAMILY SSF52540 131 306 2.27E-38 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01035 bc131d9f50c19eb7553608ab2d40eaef 351 PANTHER PTHR30473 27 340 1.8E-155 T 23-04-2016 RPE_RS01035 bc131d9f50c19eb7553608ab2d40eaef 351 Pfam PF02562 PhoH-like protein 137 340 1.5E-91 T 23-04-2016 IPR003714 PhoH-like protein GO:0005524 RPE_RS01035 bc131d9f50c19eb7553608ab2d40eaef 351 SUPERFAMILY SSF54791 30 91 1.94E-6 T 23-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 RPE_RS19255 37a5c6b585d52d3462e9ec223be46f05 256 SMART SM00382 33 230 2.7E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS19255 37a5c6b585d52d3462e9ec223be46f05 256 PANTHER PTHR24220 10 256 9.7E-92 T 23-04-2016 RPE_RS19255 37a5c6b585d52d3462e9ec223be46f05 256 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 230 252 1.2E-10 T 23-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RPE_RS19255 37a5c6b585d52d3462e9ec223be46f05 256 SUPERFAMILY SSF52540 7 253 1.2E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS19255 37a5c6b585d52d3462e9ec223be46f05 256 PANTHER PTHR24220:SF358 10 256 9.7E-92 T 23-04-2016 RPE_RS19255 37a5c6b585d52d3462e9ec223be46f05 256 Pfam PF00005 ABC transporter 24 182 7.9E-29 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS19255 37a5c6b585d52d3462e9ec223be46f05 256 Gene3D G3DSA:3.40.50.300 5 252 1.9E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02550 3173368c8d88971a04a81ed763a1e7db 171 PANTHER PTHR30582 18 168 6.5E-48 T 23-04-2016 RPE_RS02550 3173368c8d88971a04a81ed763a1e7db 171 Gene3D G3DSA:2.40.440.10 36 169 8.0E-35 T 23-04-2016 RPE_RS02550 3173368c8d88971a04a81ed763a1e7db 171 Pfam PF03734 L,D-transpeptidase catalytic domain 40 168 1.2E-19 T 23-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 RPE_RS02550 3173368c8d88971a04a81ed763a1e7db 171 PANTHER PTHR30582:SF1 18 168 6.5E-48 T 23-04-2016 RPE_RS02550 3173368c8d88971a04a81ed763a1e7db 171 SUPERFAMILY SSF141523 35 169 2.75E-31 T 23-04-2016 RPE_RS02315 f3d7251a5faf4d24aad524df0f49b2fe 1049 TIGRFAM TIGR02786 addB_alphas: double-strand break repair protein AddB 2 1041 0.0 T 23-04-2016 IPR014153 Double-strand break repair protein AddB RPE_RS02315 f3d7251a5faf4d24aad524df0f49b2fe 1049 SUPERFAMILY SSF52540 355 558 1.38E-30 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02315 f3d7251a5faf4d24aad524df0f49b2fe 1049 SUPERFAMILY SSF52540 596 745 1.38E-30 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02315 f3d7251a5faf4d24aad524df0f49b2fe 1049 Pfam PF12705 PD-(D/E)XK nuclease superfamily 766 1015 1.9E-19 T 23-04-2016 RPE_RS06095 5dd611c08f068cc605a2de2cc921e18c 124 SUPERFAMILY SSF47226 6 115 8.11E-19 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS06095 5dd611c08f068cc605a2de2cc921e18c 124 SMART SM00073 21 116 0.0025 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS06095 5dd611c08f068cc605a2de2cc921e18c 124 Gene3D G3DSA:1.20.120.160 4 115 6.7E-19 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS06095 5dd611c08f068cc605a2de2cc921e18c 124 Pfam PF01627 Hpt domain 39 109 1.8E-12 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS05635 213282fc5f217f55a0bdc8208c1a45c8 496 PIRSF PIRSF500217 1 496 5.9E-143 T 23-04-2016 IPR028362 Alginate O-acetyltransferase AlgI GO:0042121 KEGG: 00061+2.3.1.-|KEGG: 00253+2.3.1.-|KEGG: 00261+2.3.1.-|KEGG: 00310+2.3.1.-|KEGG: 00330+2.3.1.-|KEGG: 00332+2.3.1.-|KEGG: 00340+2.3.1.-|KEGG: 00350+2.3.1.-|KEGG: 00564+2.3.1.-|KEGG: 00565+2.3.1.-|KEGG: 00604+2.3.1.-|KEGG: 00623+2.3.1.-|KEGG: 00626+2.3.1.-|KEGG: 00627+2.3.1.-|KEGG: 00642+2.3.1.-|KEGG: 00650+2.3.1.-|KEGG: 00680+2.3.1.-|KEGG: 00903+2.3.1.-|KEGG: 00904+2.3.1.-|KEGG: 00906+2.3.1.-|KEGG: 00940+2.3.1.-|KEGG: 00942+2.3.1.-|KEGG: 00950+2.3.1.-|KEGG: 00960+2.3.1.-|KEGG: 00965+2.3.1.-|UniPathway: UPA00286 RPE_RS05635 213282fc5f217f55a0bdc8208c1a45c8 496 PANTHER PTHR13285 1 440 1.9E-142 T 23-04-2016 RPE_RS05635 213282fc5f217f55a0bdc8208c1a45c8 496 PIRSF PIRSF016636 1 496 1.7E-143 T 23-04-2016 IPR024194 Alginate O-acetyltransferase AlgI/D-alanyl transfer protein DltB RPE_RS05635 213282fc5f217f55a0bdc8208c1a45c8 496 Pfam PF03062 MBOAT, membrane-bound O-acyltransferase family 41 357 3.2E-26 T 23-04-2016 IPR004299 Membrane bound O-acyl transferase, MBOAT RPE_RS05635 213282fc5f217f55a0bdc8208c1a45c8 496 PANTHER PTHR13285:SF23 1 440 1.9E-142 T 23-04-2016 RPE_RS03410 7c0aa2f0da50ad1fee786b8146980206 484 Gene3D G3DSA:3.50.50.60 155 255 5.9E-26 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS03410 7c0aa2f0da50ad1fee786b8146980206 484 PANTHER PTHR11938:SF75 4 331 1.1E-134 T 23-04-2016 RPE_RS03410 7c0aa2f0da50ad1fee786b8146980206 484 PANTHER PTHR11938:SF75 347 477 1.1E-134 T 23-04-2016 RPE_RS03410 7c0aa2f0da50ad1fee786b8146980206 484 SUPERFAMILY SSF51971 152 409 1.53E-63 T 23-04-2016 RPE_RS03410 7c0aa2f0da50ad1fee786b8146980206 484 Gene3D G3DSA:1.10.1060.10 3 154 2.3E-41 T 23-04-2016 RPE_RS03410 7c0aa2f0da50ad1fee786b8146980206 484 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 153 465 2.2E-27 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS03410 7c0aa2f0da50ad1fee786b8146980206 484 TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 3 483 2.1E-200 T 23-04-2016 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 GO:0006537|GO:0016639|GO:0055114 RPE_RS03410 7c0aa2f0da50ad1fee786b8146980206 484 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 23 140 9.1E-23 T 23-04-2016 IPR028261 Dihydroprymidine dehydrogenase domain II RPE_RS03410 7c0aa2f0da50ad1fee786b8146980206 484 PRINTS PR00419 Adrenodoxin reductase family signature 298 312 3.5E-21 T 23-04-2016 RPE_RS03410 7c0aa2f0da50ad1fee786b8146980206 484 PRINTS PR00419 Adrenodoxin reductase family signature 177 190 3.5E-21 T 23-04-2016 RPE_RS03410 7c0aa2f0da50ad1fee786b8146980206 484 PRINTS PR00419 Adrenodoxin reductase family signature 154 176 3.5E-21 T 23-04-2016 RPE_RS03410 7c0aa2f0da50ad1fee786b8146980206 484 PRINTS PR00419 Adrenodoxin reductase family signature 219 229 3.5E-21 T 23-04-2016 RPE_RS03410 7c0aa2f0da50ad1fee786b8146980206 484 PANTHER PTHR11938 4 331 1.1E-134 T 23-04-2016 RPE_RS03410 7c0aa2f0da50ad1fee786b8146980206 484 PANTHER PTHR11938 347 477 1.1E-134 T 23-04-2016 RPE_RS03410 7c0aa2f0da50ad1fee786b8146980206 484 SUPERFAMILY SSF46548 2 163 1.99E-38 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 RPE_RS03410 7c0aa2f0da50ad1fee786b8146980206 484 SUPERFAMILY SSF51971 377 480 1.53E-11 T 23-04-2016 RPE_RS03410 7c0aa2f0da50ad1fee786b8146980206 484 Gene3D G3DSA:3.50.50.60 256 394 7.1E-43 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS03410 7c0aa2f0da50ad1fee786b8146980206 484 Gene3D G3DSA:3.50.50.60 395 474 2.2E-19 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS24005 dfcf41c7e869d479ac194796125a8db9 696 Gene3D G3DSA:1.20.1050.40 23 156 7.3E-15 T 23-04-2016 IPR024080 Neurolysin/Thimet oligopeptidase, N-terminal RPE_RS24005 dfcf41c7e869d479ac194796125a8db9 696 Gene3D G3DSA:1.10.1370.10 515 689 5.5E-116 T 23-04-2016 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 RPE_RS24005 dfcf41c7e869d479ac194796125a8db9 696 Gene3D G3DSA:1.10.1370.10 157 362 5.5E-116 T 23-04-2016 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 RPE_RS24005 dfcf41c7e869d479ac194796125a8db9 696 Gene3D G3DSA:3.40.390.10 372 514 2.6E-51 T 23-04-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 RPE_RS24005 dfcf41c7e869d479ac194796125a8db9 696 Pfam PF01432 Peptidase family M3 239 688 2.7E-124 T 23-04-2016 IPR001567 Peptidase M3A/M3B GO:0004222|GO:0006508 RPE_RS24005 dfcf41c7e869d479ac194796125a8db9 696 PANTHER PTHR11804:SF47 13 691 0.0 T 23-04-2016 RPE_RS24005 dfcf41c7e869d479ac194796125a8db9 696 PANTHER PTHR11804 13 691 0.0 T 23-04-2016 RPE_RS24005 dfcf41c7e869d479ac194796125a8db9 696 SUPERFAMILY SSF55486 21 688 3.79E-187 T 23-04-2016 RPE_RS01995 90dcb088cee1b35b23b41026dfcce918 820 PANTHER PTHR22683 283 817 6.9E-237 T 23-04-2016 RPE_RS01995 90dcb088cee1b35b23b41026dfcce918 820 SUPERFAMILY SSF52540 413 719 7.98E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01995 90dcb088cee1b35b23b41026dfcce918 820 PANTHER PTHR22683:SF41 283 817 6.9E-237 T 23-04-2016 RPE_RS01995 90dcb088cee1b35b23b41026dfcce918 820 Pfam PF01580 FtsK/SpoIIIE family 429 648 3.0E-62 T 23-04-2016 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 RPE_RS01995 90dcb088cee1b35b23b41026dfcce918 820 SUPERFAMILY SSF46785 753 816 6.94E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS01995 90dcb088cee1b35b23b41026dfcce918 820 Gene3D G3DSA:3.40.50.300 406 713 3.3E-96 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01995 90dcb088cee1b35b23b41026dfcce918 820 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 26 184 4.4E-28 T 23-04-2016 IPR025199 DNA translocase FtsK, 4TM region RPE_RS01995 90dcb088cee1b35b23b41026dfcce918 820 SMART SM00843 751 816 3.3E-35 T 23-04-2016 IPR018541 FtsK gamma domain RPE_RS01995 90dcb088cee1b35b23b41026dfcce918 820 Pfam PF09397 Ftsk gamma domain 755 813 4.8E-25 T 23-04-2016 IPR018541 FtsK gamma domain RPE_RS01995 90dcb088cee1b35b23b41026dfcce918 820 SMART SM00382 464 669 5.2E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS18910 fb0527866f7a2d7bda2fa19d621e69e4 286 Pfam PF09339 IclR helix-turn-helix domain 17 68 2.3E-15 T 23-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RPE_RS18910 fb0527866f7a2d7bda2fa19d621e69e4 286 SMART SM00346 15 105 7.4E-17 T 23-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RPE_RS18910 fb0527866f7a2d7bda2fa19d621e69e4 286 Pfam PF01614 Bacterial transcriptional regulator 135 256 3.0E-11 T 23-04-2016 IPR014757 Transcription regulator IclR, C-terminal RPE_RS18910 fb0527866f7a2d7bda2fa19d621e69e4 286 SUPERFAMILY SSF55781 82 260 3.86E-38 T 23-04-2016 IPR029016 GAF domain-like RPE_RS18910 fb0527866f7a2d7bda2fa19d621e69e4 286 Gene3D G3DSA:3.30.450.40 86 261 5.6E-38 T 23-04-2016 IPR029016 GAF domain-like RPE_RS18910 fb0527866f7a2d7bda2fa19d621e69e4 286 Gene3D G3DSA:1.10.10.10 10 85 1.8E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS18910 fb0527866f7a2d7bda2fa19d621e69e4 286 PANTHER PTHR30136 2 271 6.2E-141 T 23-04-2016 RPE_RS18910 fb0527866f7a2d7bda2fa19d621e69e4 286 PANTHER PTHR30136:SF4 2 271 6.2E-141 T 23-04-2016 RPE_RS18910 fb0527866f7a2d7bda2fa19d621e69e4 286 SUPERFAMILY SSF46785 17 89 5.82E-13 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS03835 fdeecf089d1558f5300409640940de83 1660 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 1226 1280 6.5E-6 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RPE_RS03835 fdeecf089d1558f5300409640940de83 1660 Gene3D G3DSA:3.40.50.920 355 511 5.3E-33 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RPE_RS03835 fdeecf089d1558f5300409640940de83 1660 SUPERFAMILY SSF52518 1132 1483 2.21E-41 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS03835 fdeecf089d1558f5300409640940de83 1660 Gene3D G3DSA:3.30.70.20 1601 1659 3.1E-5 T 23-04-2016 RPE_RS03835 fdeecf089d1558f5300409640940de83 1660 PANTHER PTHR32154 462 501 5.8E-96 T 23-04-2016 RPE_RS03835 fdeecf089d1558f5300409640940de83 1660 PANTHER PTHR32154 294 444 5.8E-96 T 23-04-2016 RPE_RS03835 fdeecf089d1558f5300409640940de83 1660 PANTHER PTHR32154 522 871 5.8E-96 T 23-04-2016 RPE_RS03835 fdeecf089d1558f5300409640940de83 1660 PANTHER PTHR32154 894 911 5.8E-96 T 23-04-2016 RPE_RS03835 fdeecf089d1558f5300409640940de83 1660 PANTHER PTHR32154 965 1069 5.8E-96 T 23-04-2016 RPE_RS03835 fdeecf089d1558f5300409640940de83 1660 PANTHER PTHR32154 1129 1379 5.8E-96 T 23-04-2016 RPE_RS03835 fdeecf089d1558f5300409640940de83 1660 PANTHER PTHR32154 8 205 5.8E-96 T 23-04-2016 RPE_RS03835 fdeecf089d1558f5300409640940de83 1660 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 846 857 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RPE_RS03835 fdeecf089d1558f5300409640940de83 1660 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 977 988 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RPE_RS03835 fdeecf089d1558f5300409640940de83 1660 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 551 745 9.9E-27 T 23-04-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 RPE_RS03835 fdeecf089d1558f5300409640940de83 1660 Gene3D G3DSA:3.40.920.10 543 754 2.7E-54 T 23-04-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 RPE_RS03835 fdeecf089d1558f5300409640940de83 1660 Gene3D G3DSA:3.30.70.20 980 1003 3.2E-6 T 23-04-2016 RPE_RS03835 fdeecf089d1558f5300409640940de83 1660 Gene3D G3DSA:3.30.70.20 1587 1600 3.2E-6 T 23-04-2016 RPE_RS03835 fdeecf089d1558f5300409640940de83 1660 SUPERFAMILY SSF54862 834 870 3.43E-12 T 23-04-2016 RPE_RS03835 fdeecf089d1558f5300409640940de83 1660 SUPERFAMILY SSF54862 947 994 3.43E-12 T 23-04-2016 RPE_RS03835 fdeecf089d1558f5300409640940de83 1660 Gene3D G3DSA:3.40.50.970 8 202 2.6E-87 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS03835 fdeecf089d1558f5300409640940de83 1660 Gene3D G3DSA:3.40.50.970 291 353 2.6E-87 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS03835 fdeecf089d1558f5300409640940de83 1660 SUPERFAMILY SSF52518 11 237 1.18E-41 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS03835 fdeecf089d1558f5300409640940de83 1660 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 364 437 3.3E-14 T 23-04-2016 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II RPE_RS03835 fdeecf089d1558f5300409640940de83 1660 Pfam PF12837 4Fe-4S binding domain 838 861 3.5E-6 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RPE_RS03835 fdeecf089d1558f5300409640940de83 1660 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 29 201 2.5E-32 T 23-04-2016 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 RPE_RS03835 fdeecf089d1558f5300409640940de83 1660 Gene3D G3DSA:3.30.70.20 838 864 4.6E-13 T 23-04-2016 RPE_RS03835 fdeecf089d1558f5300409640940de83 1660 Gene3D G3DSA:3.30.70.20 964 979 4.6E-13 T 23-04-2016 RPE_RS03835 fdeecf089d1558f5300409640940de83 1660 SUPERFAMILY SSF52922 356 494 2.43E-23 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RPE_RS03835 fdeecf089d1558f5300409640940de83 1660 SUPERFAMILY SSF53323 543 757 5.1E-43 T 23-04-2016 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 RPE_RS03835 fdeecf089d1558f5300409640940de83 1660 Gene3D G3DSA:3.40.50.970 1034 1066 2.2E-79 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS03835 fdeecf089d1558f5300409640940de83 1660 Gene3D G3DSA:3.40.50.970 1117 1444 2.2E-79 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS13525 5baa05d1b6212fdc591e6dcf5eecbd3c 78 Pfam PF02416 mttA/Hcf106 family 4 52 3.1E-11 T 23-04-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 RPE_RS13525 5baa05d1b6212fdc591e6dcf5eecbd3c 78 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 48 1.2E-20 T 23-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 RPE_RS13525 5baa05d1b6212fdc591e6dcf5eecbd3c 78 PANTHER PTHR33162 1 53 1.6E-13 T 23-04-2016 RPE_RS13525 5baa05d1b6212fdc591e6dcf5eecbd3c 78 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 72 20.914 T 23-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 RPE_RS24110 b83d9b65a65415f2db362663b48f8bde 827 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 12 811 0.0 T 23-04-2016 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 RPE_RS24110 b83d9b65a65415f2db362663b48f8bde 827 PIRSF PIRSF000460 4 827 6.4E-240 T 23-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 RPE_RS24110 b83d9b65a65415f2db362663b48f8bde 827 PANTHER PTHR11468:SF3 13 827 0.0 T 23-04-2016 RPE_RS24110 b83d9b65a65415f2db362663b48f8bde 827 SUPERFAMILY SSF53756 11 814 0.0 T 23-04-2016 RPE_RS24110 b83d9b65a65415f2db362663b48f8bde 827 PANTHER PTHR11468 13 827 0.0 T 23-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 RPE_RS24110 b83d9b65a65415f2db362663b48f8bde 827 Gene3D G3DSA:3.40.50.2000 481 796 8.9E-121 T 23-04-2016 RPE_RS24110 b83d9b65a65415f2db362663b48f8bde 827 Gene3D G3DSA:3.40.50.2000 12 480 1.4E-194 T 23-04-2016 RPE_RS24110 b83d9b65a65415f2db362663b48f8bde 827 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 656 668 - T 23-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 RPE_RS24110 b83d9b65a65415f2db362663b48f8bde 827 Pfam PF00343 Carbohydrate phosphorylase 101 811 2.8E-301 T 23-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 RPE_RS05005 bf16ddc5fe48613a1c15bf9b59049991 212 SUPERFAMILY SSF46689 3 86 2.52E-20 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS05005 bf16ddc5fe48613a1c15bf9b59049991 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 2.7E-10 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS05005 bf16ddc5fe48613a1c15bf9b59049991 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 2.7E-10 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS05005 bf16ddc5fe48613a1c15bf9b59049991 212 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 60 6.1E-17 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS05005 bf16ddc5fe48613a1c15bf9b59049991 212 Gene3D G3DSA:1.10.10.60 3 62 3.2E-21 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS05005 bf16ddc5fe48613a1c15bf9b59049991 212 Gene3D G3DSA:1.10.357.10 63 193 4.2E-36 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RPE_RS05005 bf16ddc5fe48613a1c15bf9b59049991 212 SUPERFAMILY SSF48498 84 192 4.09E-5 T 23-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RPE_RS05005 bf16ddc5fe48613a1c15bf9b59049991 212 PANTHER PTHR30055 1 210 9.2E-24 T 23-04-2016 RPE_RS05505 c5997c1b30c68ee7f89cd84ae6852050 440 Pfam PF02706 Chain length determinant protein 20 172 1.1E-4 T 23-04-2016 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 RPE_RS23060 cb4c8a5b1b4e6f70605555874a7bdddf 331 Gene3D G3DSA:3.40.50.1820 61 190 3.0E-27 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS23060 cb4c8a5b1b4e6f70605555874a7bdddf 331 Gene3D G3DSA:3.40.50.1820 239 322 3.0E-27 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS23060 cb4c8a5b1b4e6f70605555874a7bdddf 331 Pfam PF12146 Serine aminopeptidase, S33 87 287 2.7E-22 T 23-04-2016 IPR022742 Serine aminopeptidase, S33 RPE_RS23060 cb4c8a5b1b4e6f70605555874a7bdddf 331 SUPERFAMILY SSF53474 57 321 7.83E-33 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS23060 cb4c8a5b1b4e6f70605555874a7bdddf 331 PANTHER PTHR11614 52 191 2.0E-19 T 23-04-2016 RPE_RS06890 13346efe2c1d6b7f77a433c50e9ef6b2 528 SUPERFAMILY SSF56235 3 528 4.63E-170 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RPE_RS06890 13346efe2c1d6b7f77a433c50e9ef6b2 528 Pfam PF01019 Gamma-glutamyltranspeptidase 32 523 1.3E-143 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RPE_RS06890 13346efe2c1d6b7f77a433c50e9ef6b2 528 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 17 520 1.2E-115 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RPE_RS06890 13346efe2c1d6b7f77a433c50e9ef6b2 528 PANTHER PTHR11686:SF8 9 528 1.9E-192 T 23-04-2016 RPE_RS06890 13346efe2c1d6b7f77a433c50e9ef6b2 528 PANTHER PTHR11686 9 528 1.9E-192 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RPE_RS06890 13346efe2c1d6b7f77a433c50e9ef6b2 528 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 350 368 4.0E-39 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RPE_RS06890 13346efe2c1d6b7f77a433c50e9ef6b2 528 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 429 446 4.0E-39 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RPE_RS06890 13346efe2c1d6b7f77a433c50e9ef6b2 528 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 226 242 4.0E-39 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RPE_RS06890 13346efe2c1d6b7f77a433c50e9ef6b2 528 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 110 128 4.0E-39 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RPE_RS06890 13346efe2c1d6b7f77a433c50e9ef6b2 528 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 374 392 4.0E-39 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RPE_RS06890 13346efe2c1d6b7f77a433c50e9ef6b2 528 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 128 147 4.0E-39 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RPE_RS06890 13346efe2c1d6b7f77a433c50e9ef6b2 528 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 405 420 4.0E-39 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RPE_RS06890 13346efe2c1d6b7f77a433c50e9ef6b2 528 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 39 64 4.0E-39 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RPE_RS06890 13346efe2c1d6b7f77a433c50e9ef6b2 528 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 255 274 4.0E-39 T 23-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 RPE_RS21605 5681075764303bac804cc813841fe1ee 511 Gene3D G3DSA:3.40.50.980 170 327 2.3E-36 T 23-04-2016 RPE_RS21605 5681075764303bac804cc813841fe1ee 511 SUPERFAMILY SSF56801 4 506 9.29E-140 T 23-04-2016 RPE_RS21605 5681075764303bac804cc813841fe1ee 511 Gene3D G3DSA:3.40.50.980 6 169 1.2E-36 T 23-04-2016 RPE_RS21605 5681075764303bac804cc813841fe1ee 511 PANTHER PTHR24096 1 505 1.8E-138 T 23-04-2016 RPE_RS21605 5681075764303bac804cc813841fe1ee 511 ProSitePatterns PS00455 Putative AMP-binding domain signature. 163 174 - T 23-04-2016 IPR020845 AMP-binding, conserved site RPE_RS21605 5681075764303bac804cc813841fe1ee 511 Pfam PF00501 AMP-binding enzyme 13 411 4.3E-91 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS21605 5681075764303bac804cc813841fe1ee 511 Gene3D G3DSA:3.30.300.30 406 504 7.6E-30 T 23-04-2016 RPE_RS21605 5681075764303bac804cc813841fe1ee 511 Pfam PF13193 AMP-binding enzyme C-terminal domain 421 495 1.9E-17 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RPE_RS21605 5681075764303bac804cc813841fe1ee 511 Gene3D G3DSA:2.30.38.10 328 405 3.2E-24 T 23-04-2016 RPE_RS04285 15765e9ea67cf0bbdcdf40c12c766038 602 Gene3D G3DSA:2.140.10.10 28 602 1.7E-169 T 23-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain RPE_RS04285 15765e9ea67cf0bbdcdf40c12c766038 602 PANTHER PTHR32303:SF6 403 569 2.0E-289 T 23-04-2016 RPE_RS04285 15765e9ea67cf0bbdcdf40c12c766038 602 PANTHER PTHR32303:SF6 241 362 2.0E-289 T 23-04-2016 RPE_RS04285 15765e9ea67cf0bbdcdf40c12c766038 602 PANTHER PTHR32303:SF6 1 219 2.0E-289 T 23-04-2016 RPE_RS04285 15765e9ea67cf0bbdcdf40c12c766038 602 Pfam PF01011 PQQ enzyme repeat 505 537 2.1E-7 T 23-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat RPE_RS04285 15765e9ea67cf0bbdcdf40c12c766038 602 ProSitePatterns PS00364 Bacterial quinoprotein dehydrogenases signature 2. 261 282 - T 23-04-2016 IPR001479 Quinoprotein dehydrogenase, conserved site GO:0030288|GO:0055114 RPE_RS04285 15765e9ea67cf0bbdcdf40c12c766038 602 Pfam PF13360 PQQ-like domain 85 222 3.9E-14 T 23-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat RPE_RS04285 15765e9ea67cf0bbdcdf40c12c766038 602 TIGRFAM TIGR03075 PQQ_enz_alc_DH: PQQ-dependent dehydrogenase, methanol/ethanol family 21 559 1.4E-235 T 23-04-2016 IPR017512 PQQ-dependent dehydrogenase, methanol/ethanol family GO:0005509|GO:0016020|GO:0016614|GO:0055114 RPE_RS04285 15765e9ea67cf0bbdcdf40c12c766038 602 SMART SM00564 499 531 1.4E-4 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RPE_RS04285 15765e9ea67cf0bbdcdf40c12c766038 602 SMART SM00564 266 313 490.0 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RPE_RS04285 15765e9ea67cf0bbdcdf40c12c766038 602 SMART SM00564 134 166 0.011 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RPE_RS04285 15765e9ea67cf0bbdcdf40c12c766038 602 SMART SM00564 180 217 1.2 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RPE_RS04285 15765e9ea67cf0bbdcdf40c12c766038 602 PANTHER PTHR32303 403 569 2.0E-289 T 23-04-2016 RPE_RS04285 15765e9ea67cf0bbdcdf40c12c766038 602 PANTHER PTHR32303 241 362 2.0E-289 T 23-04-2016 RPE_RS04285 15765e9ea67cf0bbdcdf40c12c766038 602 PANTHER PTHR32303 1 219 2.0E-289 T 23-04-2016 RPE_RS04285 15765e9ea67cf0bbdcdf40c12c766038 602 SUPERFAMILY SSF50998 31 599 6.67E-178 T 23-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily RPE_RS17095 5439e43ba17a47e92bbeabac1bce1298 153 Pfam PF01381 Helix-turn-helix 34 89 1.9E-6 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RPE_RS17095 5439e43ba17a47e92bbeabac1bce1298 153 SUPERFAMILY SSF47413 34 95 1.06E-7 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS17095 5439e43ba17a47e92bbeabac1bce1298 153 Gene3D G3DSA:1.10.260.40 33 92 3.6E-10 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS17095 5439e43ba17a47e92bbeabac1bce1298 153 SMART SM00530 33 90 2.6E-7 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RPE_RS17095 5439e43ba17a47e92bbeabac1bce1298 153 TIGRFAM TIGR02612 mob_myst_A: mobile mystery protein A 6 152 8.5E-58 T 23-04-2016 IPR013435 Mobile mystery protein A RPE_RS12665 615bd270ccc3ada60099e7713d26011b 396 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 45 56 - T 23-04-2016 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 RPE_RS12665 615bd270ccc3ada60099e7713d26011b 396 PANTHER PTHR11993 1 391 5.4E-242 T 23-04-2016 RPE_RS12665 615bd270ccc3ada60099e7713d26011b 396 PANTHER PTHR11993:SF10 1 391 5.4E-242 T 23-04-2016 RPE_RS12665 615bd270ccc3ada60099e7713d26011b 396 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 1 396 48.361 T 23-04-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 RPE_RS12665 615bd270ccc3ada60099e7713d26011b 396 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 122 396 1.9E-121 T 23-04-2016 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 RPE_RS12665 615bd270ccc3ada60099e7713d26011b 396 Gene3D G3DSA:1.10.645.10 9 388 8.4E-66 T 23-04-2016 IPR029014 NiFe hydrogenase-like RPE_RS12665 615bd270ccc3ada60099e7713d26011b 396 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 8 396 3.7E-179 T 23-04-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 RPE_RS12665 615bd270ccc3ada60099e7713d26011b 396 SUPERFAMILY SSF56762 18 396 9.81E-139 T 23-04-2016 IPR029014 NiFe hydrogenase-like RPE_RS05420 fa9a23377bfe59b417408f83e9382a81 253 PANTHER PTHR11941:SF17 2 252 2.8E-84 T 23-04-2016 RPE_RS05420 fa9a23377bfe59b417408f83e9382a81 253 Gene3D G3DSA:3.90.226.10 3 252 3.3E-70 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS05420 fa9a23377bfe59b417408f83e9382a81 253 SUPERFAMILY SSF52096 2 252 4.27E-68 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS05420 fa9a23377bfe59b417408f83e9382a81 253 Pfam PF00378 Enoyl-CoA hydratase/isomerase 15 249 3.4E-47 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RPE_RS05420 fa9a23377bfe59b417408f83e9382a81 253 PANTHER PTHR11941 2 252 2.8E-84 T 23-04-2016 RPE_RS18570 6b84a28dc3854be65c4a326ca0964fd0 506 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 17 200 3.3E-56 T 23-04-2016 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RPE_RS18570 6b84a28dc3854be65c4a326ca0964fd0 506 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 190 196 - T 23-04-2016 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RPE_RS18570 6b84a28dc3854be65c4a326ca0964fd0 506 PIRSF PIRSF000110 2 504 3.7E-166 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RPE_RS18570 6b84a28dc3854be65c4a326ca0964fd0 506 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 156 169 5.8E-46 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RPE_RS18570 6b84a28dc3854be65c4a326ca0964fd0 506 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 180 208 5.8E-46 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RPE_RS18570 6b84a28dc3854be65c4a326ca0964fd0 506 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 232 249 5.8E-46 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RPE_RS18570 6b84a28dc3854be65c4a326ca0964fd0 506 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 250 266 5.8E-46 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RPE_RS18570 6b84a28dc3854be65c4a326ca0964fd0 506 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 341 367 5.8E-46 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RPE_RS18570 6b84a28dc3854be65c4a326ca0964fd0 506 SUPERFAMILY SSF55347 190 501 1.63E-105 T 23-04-2016 RPE_RS18570 6b84a28dc3854be65c4a326ca0964fd0 506 PANTHER PTHR23429 16 503 1.4E-215 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RPE_RS18570 6b84a28dc3854be65c4a326ca0964fd0 506 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 15 502 1.1E-175 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RPE_RS18570 6b84a28dc3854be65c4a326ca0964fd0 506 PANTHER PTHR23429:SF0 16 503 1.4E-215 T 23-04-2016 RPE_RS18570 6b84a28dc3854be65c4a326ca0964fd0 506 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 13 502 76.013 T 23-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RPE_RS18570 6b84a28dc3854be65c4a326ca0964fd0 506 Gene3D G3DSA:3.40.50.720 14 199 9.2E-63 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS18570 6b84a28dc3854be65c4a326ca0964fd0 506 SUPERFAMILY SSF51735 11 203 4.72E-54 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS18570 6b84a28dc3854be65c4a326ca0964fd0 506 Gene3D G3DSA:3.30.360.10 200 501 6.3E-114 T 23-04-2016 RPE_RS18570 6b84a28dc3854be65c4a326ca0964fd0 506 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 202 501 4.6E-108 T 23-04-2016 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 RPE_RS14805 d8bf8542a62cae5494a9519a37d4640f 685 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 39 680 42.651 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RPE_RS14805 d8bf8542a62cae5494a9519a37d4640f 685 ProSitePatterns PS00177 DNA topoisomerase II signature. 468 476 - T 23-04-2016 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS14805 d8bf8542a62cae5494a9519a37d4640f 685 Gene3D G3DSA:3.30.565.10 42 244 2.6E-76 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS14805 d8bf8542a62cae5494a9519a37d4640f 685 SUPERFAMILY SSF55874 42 246 4.45E-57 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS14805 d8bf8542a62cae5494a9519a37d4640f 685 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 609 671 1.7E-23 T 23-04-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS14805 d8bf8542a62cae5494a9519a37d4640f 685 SUPERFAMILY SSF54211 267 438 7.21E-43 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RPE_RS14805 d8bf8542a62cae5494a9519a37d4640f 685 Gene3D G3DSA:3.40.50.670 450 663 5.4E-82 T 23-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS14805 d8bf8542a62cae5494a9519a37d4640f 685 SMART SM00387 67 213 1.3E-25 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS14805 d8bf8542a62cae5494a9519a37d4640f 685 PANTHER PTHR10169 22 685 1.1E-200 T 23-04-2016 RPE_RS14805 d8bf8542a62cae5494a9519a37d4640f 685 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 67 212 4.2E-21 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS14805 d8bf8542a62cae5494a9519a37d4640f 685 SMART SM00433 71 676 3.1E-283 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS14805 d8bf8542a62cae5494a9519a37d4640f 685 PRINTS PR00418 DNA topoisomerase II family signature 71 86 4.1E-65 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS14805 d8bf8542a62cae5494a9519a37d4640f 685 PRINTS PR00418 DNA topoisomerase II family signature 466 480 4.1E-65 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS14805 d8bf8542a62cae5494a9519a37d4640f 685 PRINTS PR00418 DNA topoisomerase II family signature 532 548 4.1E-65 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS14805 d8bf8542a62cae5494a9519a37d4640f 685 PRINTS PR00418 DNA topoisomerase II family signature 550 567 4.1E-65 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS14805 d8bf8542a62cae5494a9519a37d4640f 685 PRINTS PR00418 DNA topoisomerase II family signature 570 582 4.1E-65 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS14805 d8bf8542a62cae5494a9519a37d4640f 685 PRINTS PR00418 DNA topoisomerase II family signature 150 164 4.1E-65 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS14805 d8bf8542a62cae5494a9519a37d4640f 685 PRINTS PR00418 DNA topoisomerase II family signature 316 329 4.1E-65 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS14805 d8bf8542a62cae5494a9519a37d4640f 685 PRINTS PR00418 DNA topoisomerase II family signature 106 119 4.1E-65 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS14805 d8bf8542a62cae5494a9519a37d4640f 685 PRINTS PR00418 DNA topoisomerase II family signature 613 629 4.1E-65 T 23-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS14805 d8bf8542a62cae5494a9519a37d4640f 685 SUPERFAMILY SSF56719 440 673 1.18E-76 T 23-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 RPE_RS14805 d8bf8542a62cae5494a9519a37d4640f 685 Gene3D G3DSA:3.30.230.10 266 438 4.2E-45 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RPE_RS14805 d8bf8542a62cae5494a9519a37d4640f 685 Pfam PF00204 DNA gyrase B 267 437 1.8E-43 T 23-04-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS14805 d8bf8542a62cae5494a9519a37d4640f 685 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 41 676 9.3E-237 T 23-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RPE_RS14805 d8bf8542a62cae5494a9519a37d4640f 685 Pfam PF01751 Toprim domain 465 569 1.8E-16 T 23-04-2016 IPR006171 Toprim domain RPE_RS14805 d8bf8542a62cae5494a9519a37d4640f 685 PRINTS PR01159 DNA gyrase subunit B signature 516 525 1.4E-17 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS14805 d8bf8542a62cae5494a9519a37d4640f 685 PRINTS PR01159 DNA gyrase subunit B signature 359 375 1.4E-17 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS14805 d8bf8542a62cae5494a9519a37d4640f 685 PRINTS PR01159 DNA gyrase subunit B signature 407 421 1.4E-17 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS14805 d8bf8542a62cae5494a9519a37d4640f 685 PRINTS PR01159 DNA gyrase subunit B signature 266 288 1.4E-17 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS14805 d8bf8542a62cae5494a9519a37d4640f 685 PRINTS PR01159 DNA gyrase subunit B signature 421 441 1.4E-17 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS14805 d8bf8542a62cae5494a9519a37d4640f 685 PRINTS PR01159 DNA gyrase subunit B signature 42 52 1.4E-17 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS14805 d8bf8542a62cae5494a9519a37d4640f 685 PRINTS PR01159 DNA gyrase subunit B signature 634 646 1.4E-17 T 23-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS07440 dd030a1b33a7f93fa7cb570b584f5bad 342 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 291 3.2E-27 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS07440 dd030a1b33a7f93fa7cb570b584f5bad 342 Hamap MF_01685 Ferredoxin--NADP reductase. 6 332 41.109 T 23-04-2016 IPR022890 Ferredoxin--NADP reductase, type 2 GO:0004324|GO:0055114 KEGG: 00195+1.18.1.2|MetaCyc: PWY-101|MetaCyc: PWY-7230 RPE_RS07440 dd030a1b33a7f93fa7cb570b584f5bad 342 PANTHER PTHR22912:SF158 1 323 9.2E-118 T 23-04-2016 RPE_RS07440 dd030a1b33a7f93fa7cb570b584f5bad 342 Gene3D G3DSA:3.50.50.60 6 127 5.5E-45 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS07440 dd030a1b33a7f93fa7cb570b584f5bad 342 Gene3D G3DSA:3.50.50.60 250 329 5.5E-45 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS07440 dd030a1b33a7f93fa7cb570b584f5bad 342 SUPERFAMILY SSF51905 1 316 3.72E-40 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS07440 dd030a1b33a7f93fa7cb570b584f5bad 342 Gene3D G3DSA:3.50.50.60 129 245 3.0E-20 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS07440 dd030a1b33a7f93fa7cb570b584f5bad 342 PANTHER PTHR22912 1 323 9.2E-118 T 23-04-2016 RPE_RS07440 dd030a1b33a7f93fa7cb570b584f5bad 342 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 152 176 6.3E-22 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RPE_RS07440 dd030a1b33a7f93fa7cb570b584f5bad 342 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 279 297 6.3E-22 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RPE_RS07440 dd030a1b33a7f93fa7cb570b584f5bad 342 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 113 121 6.3E-22 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RPE_RS07440 dd030a1b33a7f93fa7cb570b584f5bad 342 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 6.3E-22 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RPE_RS07440 dd030a1b33a7f93fa7cb570b584f5bad 342 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 65 75 6.3E-22 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RPE_RS07440 dd030a1b33a7f93fa7cb570b584f5bad 342 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 112 130 2.4E-14 T 23-04-2016 RPE_RS07440 dd030a1b33a7f93fa7cb570b584f5bad 342 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 269 291 2.4E-14 T 23-04-2016 RPE_RS07440 dd030a1b33a7f93fa7cb570b584f5bad 342 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 156 174 2.4E-14 T 23-04-2016 RPE_RS07440 dd030a1b33a7f93fa7cb570b584f5bad 342 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 2.4E-14 T 23-04-2016 RPE_RS23780 0b2dad437ed6bb040339e966515065ec 429 Gene3D G3DSA:3.30.830.10 12 219 6.8E-61 T 23-04-2016 IPR011237 Peptidase M16 domain GO:0046872 RPE_RS23780 0b2dad437ed6bb040339e966515065ec 429 SUPERFAMILY SSF63411 2 206 4.0E-59 T 23-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RPE_RS23780 0b2dad437ed6bb040339e966515065ec 429 Pfam PF00675 Insulinase (Peptidase family M16) 14 160 1.1E-42 T 23-04-2016 IPR011765 Peptidase M16, N-terminal RPE_RS23780 0b2dad437ed6bb040339e966515065ec 429 SUPERFAMILY SSF63411 228 404 2.33E-44 T 23-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RPE_RS23780 0b2dad437ed6bb040339e966515065ec 429 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 34 57 - T 23-04-2016 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 RPE_RS23780 0b2dad437ed6bb040339e966515065ec 429 Gene3D G3DSA:3.30.830.10 220 409 7.3E-55 T 23-04-2016 IPR011237 Peptidase M16 domain GO:0046872 RPE_RS23780 0b2dad437ed6bb040339e966515065ec 429 Pfam PF05193 Peptidase M16 inactive domain 167 339 8.4E-40 T 23-04-2016 IPR007863 Peptidase M16, C-terminal RPE_RS23780 0b2dad437ed6bb040339e966515065ec 429 PANTHER PTHR11851 3 404 1.0E-132 T 23-04-2016 RPE_RS04020 1cb892fd3d6678f99dc49a0a3dadf50c 185 SMART SM00507 81 131 9.2E-13 T 23-04-2016 IPR003615 HNH nuclease RPE_RS04020 1cb892fd3d6678f99dc49a0a3dadf50c 185 PANTHER PTHR33877 1 185 1.6E-82 T 23-04-2016 RPE_RS04020 1cb892fd3d6678f99dc49a0a3dadf50c 185 PANTHER PTHR33877:SF2 1 185 1.6E-82 T 23-04-2016 RPE_RS04020 1cb892fd3d6678f99dc49a0a3dadf50c 185 Pfam PF14279 HNH endonuclease 94 143 3.2E-15 T 23-04-2016 IPR029471 HNH endonuclease 5 RPE_RS01125 5559a1c7ba98dc1df4cd2bd002a75008 194 PANTHER PTHR35529 2 189 9.9E-55 T 23-04-2016 RPE_RS01125 5559a1c7ba98dc1df4cd2bd002a75008 194 Hamap MF_01521 Probable manganese efflux pump MntP [mntP]. 1 185 23.63 T 23-04-2016 IPR022929 Putative manganese efflux pump MntP RPE_RS01125 5559a1c7ba98dc1df4cd2bd002a75008 194 Pfam PF02659 Putative manganese efflux pump 34 182 8.3E-47 T 23-04-2016 IPR003810 Putative manganese efflux pump RPE_RS04785 de18476563fe347240209b3f87e7882e 224 Gene3D G3DSA:3.40.50.1820 5 224 3.9E-45 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS04785 de18476563fe347240209b3f87e7882e 224 SUPERFAMILY SSF53474 3 224 8.25E-36 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS04785 de18476563fe347240209b3f87e7882e 224 PANTHER PTHR17630 5 223 2.4E-42 T 23-04-2016 RPE_RS04785 de18476563fe347240209b3f87e7882e 224 Pfam PF01738 Dienelactone hydrolase family 16 222 3.0E-43 T 23-04-2016 IPR002925 Dienelactone hydrolase GO:0016787 RPE_RS04785 de18476563fe347240209b3f87e7882e 224 PANTHER PTHR17630:SF32 5 223 2.4E-42 T 23-04-2016 RPE_RS23925 64b411c6599e095a3b9c9c5f1f2f0b52 354 SMART SM00849 48 265 8.6E-24 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS23925 64b411c6599e095a3b9c9c5f1f2f0b52 354 SUPERFAMILY SSF56281 6 341 6.94E-66 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS23925 64b411c6599e095a3b9c9c5f1f2f0b52 354 PANTHER PTHR11935:SF109 165 309 1.0E-73 T 23-04-2016 RPE_RS23925 64b411c6599e095a3b9c9c5f1f2f0b52 354 PANTHER PTHR11935:SF109 15 147 1.0E-73 T 23-04-2016 RPE_RS23925 64b411c6599e095a3b9c9c5f1f2f0b52 354 Pfam PF00753 Metallo-beta-lactamase superfamily 48 265 1.9E-26 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS23925 64b411c6599e095a3b9c9c5f1f2f0b52 354 Gene3D G3DSA:3.60.15.10 156 295 3.1E-49 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS23925 64b411c6599e095a3b9c9c5f1f2f0b52 354 Gene3D G3DSA:3.60.15.10 17 123 3.1E-49 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS23925 64b411c6599e095a3b9c9c5f1f2f0b52 354 PANTHER PTHR11935 165 309 1.0E-73 T 23-04-2016 RPE_RS23925 64b411c6599e095a3b9c9c5f1f2f0b52 354 PANTHER PTHR11935 15 147 1.0E-73 T 23-04-2016 RPE_RS04110 295918349f0db0e2ce0bcb02e013a918 324 SMART SM00363 10 69 7.2E-6 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RPE_RS04110 295918349f0db0e2ce0bcb02e013a918 324 SUPERFAMILY SSF55120 72 320 5.04E-73 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RPE_RS04110 295918349f0db0e2ce0bcb02e013a918 324 Gene3D G3DSA:3.10.290.10 10 60 1.0E-8 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RPE_RS04110 295918349f0db0e2ce0bcb02e013a918 324 PANTHER PTHR11079 1 322 1.8E-119 T 23-04-2016 RPE_RS04110 295918349f0db0e2ce0bcb02e013a918 324 Pfam PF01479 S4 domain 10 57 6.8E-6 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RPE_RS04110 295918349f0db0e2ce0bcb02e013a918 324 PANTHER PTHR11079:SF73 1 322 1.8E-119 T 23-04-2016 RPE_RS04110 295918349f0db0e2ce0bcb02e013a918 324 Pfam PF00849 RNA pseudouridylate synthase 84 249 5.9E-31 T 23-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RPE_RS04110 295918349f0db0e2ce0bcb02e013a918 324 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 131 145 - T 23-04-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 RPE_RS04110 295918349f0db0e2ce0bcb02e013a918 324 SUPERFAMILY SSF55174 10 63 1.28E-8 T 23-04-2016 RPE_RS04110 295918349f0db0e2ce0bcb02e013a918 324 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 10 320 1.5E-86 T 23-04-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 RPE_RS21925 bd6bc121e5ea925147c763e992a950f0 125 TIGRFAM TIGR02301 TIGR02301: TIGR02301 family protein 5 123 4.9E-48 T 23-04-2016 IPR012645 Conserved hypothetical protein CHP02301 RPE_RS21925 bd6bc121e5ea925147c763e992a950f0 125 Pfam PF09539 Protein of unknown function (DUF2385) 28 123 3.2E-38 T 23-04-2016 IPR012645 Conserved hypothetical protein CHP02301 RPE_RS07530 e19c82bc71e54336c6ef24323aafeed7 141 Gene3D G3DSA:3.40.50.620 2 140 1.4E-33 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS07530 e19c82bc71e54336c6ef24323aafeed7 141 PRINTS PR01438 Universal stress protein signature 118 140 2.0E-11 T 23-04-2016 IPR006015 Universal stress protein A RPE_RS07530 e19c82bc71e54336c6ef24323aafeed7 141 PRINTS PR01438 Universal stress protein signature 2 20 2.0E-11 T 23-04-2016 IPR006015 Universal stress protein A RPE_RS07530 e19c82bc71e54336c6ef24323aafeed7 141 PRINTS PR01438 Universal stress protein signature 101 113 2.0E-11 T 23-04-2016 IPR006015 Universal stress protein A RPE_RS07530 e19c82bc71e54336c6ef24323aafeed7 141 SUPERFAMILY SSF52402 2 140 1.42E-30 T 23-04-2016 RPE_RS07530 e19c82bc71e54336c6ef24323aafeed7 141 Pfam PF00582 Universal stress protein family 1 140 2.9E-26 T 23-04-2016 IPR006016 UspA GO:0006950 RPE_RS07530 e19c82bc71e54336c6ef24323aafeed7 141 PANTHER PTHR31964:SF42 1 140 7.0E-25 T 23-04-2016 RPE_RS07530 e19c82bc71e54336c6ef24323aafeed7 141 PANTHER PTHR31964 1 140 7.0E-25 T 23-04-2016 RPE_RS14350 33fe441823f8e6c1c7bfab92bf2069fc 137 Gene3D G3DSA:3.10.129.10 5 135 1.1E-40 T 23-04-2016 IPR029069 HotDog domain RPE_RS14350 33fe441823f8e6c1c7bfab92bf2069fc 137 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 22 114 3.2E-11 T 23-04-2016 IPR003736 Phenylacetic acid degradation-related domain RPE_RS14350 33fe441823f8e6c1c7bfab92bf2069fc 137 PANTHER PTHR12418 13 137 7.7E-56 T 23-04-2016 RPE_RS14350 33fe441823f8e6c1c7bfab92bf2069fc 137 SUPERFAMILY SSF54637 18 136 6.17E-24 T 23-04-2016 IPR029069 HotDog domain RPE_RS14350 33fe441823f8e6c1c7bfab92bf2069fc 137 PANTHER PTHR12418:SF30 13 137 7.7E-56 T 23-04-2016 RPE_RS14350 33fe441823f8e6c1c7bfab92bf2069fc 137 Pfam PF03061 Thioesterase superfamily 47 119 5.9E-14 T 23-04-2016 IPR006683 Thioesterase domain RPE_RS08875 0cf7fc4a78ab4e435f1b46e619aeb1d6 551 SUPERFAMILY SSF55124 252 276 6.54E-26 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RPE_RS08875 0cf7fc4a78ab4e435f1b46e619aeb1d6 551 SUPERFAMILY SSF56014 407 548 1.57E-36 T 23-04-2016 RPE_RS08875 0cf7fc4a78ab4e435f1b46e619aeb1d6 551 Gene3D G3DSA:3.30.413.10 120 272 1.6E-43 T 23-04-2016 RPE_RS08875 0cf7fc4a78ab4e435f1b46e619aeb1d6 551 SUPERFAMILY SSF55124 1 126 6.05E-30 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RPE_RS08875 0cf7fc4a78ab4e435f1b46e619aeb1d6 551 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 119 273 9.9E-42 T 23-04-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RPE_RS08875 0cf7fc4a78ab4e435f1b46e619aeb1d6 551 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 411 546 4.7E-11 T 23-04-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RPE_RS08875 0cf7fc4a78ab4e435f1b46e619aeb1d6 551 PANTHER PTHR11493 327 551 5.5E-168 T 23-04-2016 RPE_RS08875 0cf7fc4a78ab4e435f1b46e619aeb1d6 551 PANTHER PTHR11493 1 294 5.5E-168 T 23-04-2016 RPE_RS08875 0cf7fc4a78ab4e435f1b46e619aeb1d6 551 PANTHER PTHR11493:SF47 327 551 5.5E-168 T 23-04-2016 RPE_RS08875 0cf7fc4a78ab4e435f1b46e619aeb1d6 551 PANTHER PTHR11493:SF47 1 294 5.5E-168 T 23-04-2016 RPE_RS08875 0cf7fc4a78ab4e435f1b46e619aeb1d6 551 Gene3D G3DSA:3.90.480.10 48 117 1.8E-37 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RPE_RS08875 0cf7fc4a78ab4e435f1b46e619aeb1d6 551 Gene3D G3DSA:3.90.480.10 321 403 1.8E-37 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RPE_RS08875 0cf7fc4a78ab4e435f1b46e619aeb1d6 551 SUPERFAMILY SSF56014 120 281 3.14E-47 T 23-04-2016 RPE_RS08875 0cf7fc4a78ab4e435f1b46e619aeb1d6 551 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 52 111 6.7E-17 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RPE_RS08875 0cf7fc4a78ab4e435f1b46e619aeb1d6 551 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 331 398 1.9E-16 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RPE_RS08875 0cf7fc4a78ab4e435f1b46e619aeb1d6 551 Gene3D G3DSA:3.30.413.10 407 547 6.9E-32 T 23-04-2016 RPE_RS08875 0cf7fc4a78ab4e435f1b46e619aeb1d6 551 SUPERFAMILY SSF55124 315 421 6.54E-26 T 23-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 RPE_RS23340 df0b062f837624b0ee0dce551ff6d96e 363 PANTHER PTHR24421 1 363 1.3E-200 T 23-04-2016 RPE_RS23340 df0b062f837624b0ee0dce551ff6d96e 363 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 6 356 39.661 T 23-04-2016 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RPE_RS23340 df0b062f837624b0ee0dce551ff6d96e 363 SUPERFAMILY SSF52738 168 355 5.23E-70 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RPE_RS23340 df0b062f837624b0ee0dce551ff6d96e 363 Pfam PF01339 CheB methylesterase 173 351 2.4E-59 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RPE_RS23340 df0b062f837624b0ee0dce551ff6d96e 363 SUPERFAMILY SSF52172 4 138 3.13E-29 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS23340 df0b062f837624b0ee0dce551ff6d96e 363 PIRSF PIRSF000876 3 359 2.1E-134 T 23-04-2016 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RPE_RS23340 df0b062f837624b0ee0dce551ff6d96e 363 Pfam PF00072 Response regulator receiver domain 8 111 7.4E-24 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS23340 df0b062f837624b0ee0dce551ff6d96e 363 Gene3D G3DSA:3.40.50.2300 4 133 4.4E-31 T 23-04-2016 RPE_RS23340 df0b062f837624b0ee0dce551ff6d96e 363 SMART SM00448 6 122 5.6E-23 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS23340 df0b062f837624b0ee0dce551ff6d96e 363 Gene3D G3DSA:3.40.50.180 166 353 5.5E-80 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RPE_RS23340 df0b062f837624b0ee0dce551ff6d96e 363 PANTHER PTHR24421:SF4 1 363 1.3E-200 T 23-04-2016 RPE_RS03155 cce3e52656111d9816d052d5d133feec 776 SMART SM00388 537 605 4.6E-5 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS03155 cce3e52656111d9816d052d5d133feec 776 PANTHER PTHR24423:SF518 60 768 5.4E-122 T 23-04-2016 RPE_RS03155 cce3e52656111d9816d052d5d133feec 776 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 647 767 1.6E-22 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS03155 cce3e52656111d9816d052d5d133feec 776 Gene3D G3DSA:3.30.450.20 45 95 5.0E-4 T 23-04-2016 RPE_RS03155 cce3e52656111d9816d052d5d133feec 776 Pfam PF00360 Phytochrome region 341 520 1.9E-55 T 23-04-2016 IPR013515 Phytochrome, central region GO:0006355|GO:0009584|GO:0018298 RPE_RS03155 cce3e52656111d9816d052d5d133feec 776 SMART SM00065 161 335 1.1E-4 T 23-04-2016 IPR003018 GAF domain GO:0005515 RPE_RS03155 cce3e52656111d9816d052d5d133feec 776 Gene3D G3DSA:3.30.450.40 145 325 1.9E-8 T 23-04-2016 IPR029016 GAF domain-like RPE_RS03155 cce3e52656111d9816d052d5d133feec 776 Gene3D G3DSA:1.10.287.130 530 601 1.4E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS03155 cce3e52656111d9816d052d5d133feec 776 Pfam PF00512 His Kinase A (phospho-acceptor) domain 539 603 2.1E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS03155 cce3e52656111d9816d052d5d133feec 776 SUPERFAMILY SSF47384 522 603 4.9E-14 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS03155 cce3e52656111d9816d052d5d133feec 776 PRINTS PR01033 Phytochrome signature 82 104 3.9E-18 T 23-04-2016 IPR001294 Phytochrome GO:0006355|GO:0009584 RPE_RS03155 cce3e52656111d9816d052d5d133feec 776 PRINTS PR01033 Phytochrome signature 446 465 3.9E-18 T 23-04-2016 IPR001294 Phytochrome GO:0006355|GO:0009584 RPE_RS03155 cce3e52656111d9816d052d5d133feec 776 PRINTS PR01033 Phytochrome signature 263 284 3.9E-18 T 23-04-2016 IPR001294 Phytochrome GO:0006355|GO:0009584 RPE_RS03155 cce3e52656111d9816d052d5d133feec 776 PRINTS PR01033 Phytochrome signature 480 498 3.9E-18 T 23-04-2016 IPR001294 Phytochrome GO:0006355|GO:0009584 RPE_RS03155 cce3e52656111d9816d052d5d133feec 776 PRINTS PR01033 Phytochrome signature 176 195 3.9E-18 T 23-04-2016 IPR001294 Phytochrome GO:0006355|GO:0009584 RPE_RS03155 cce3e52656111d9816d052d5d133feec 776 Pfam PF08446 PAS fold 28 135 2.6E-24 T 23-04-2016 IPR013654 PAS fold-2 GO:0006355 RPE_RS03155 cce3e52656111d9816d052d5d133feec 776 Pfam PF01590 GAF domain 161 327 4.8E-16 T 23-04-2016 IPR003018 GAF domain GO:0005515 RPE_RS03155 cce3e52656111d9816d052d5d133feec 776 SUPERFAMILY SSF55874 594 769 3.8E-39 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS03155 cce3e52656111d9816d052d5d133feec 776 Gene3D G3DSA:3.30.565.10 609 769 4.0E-41 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS03155 cce3e52656111d9816d052d5d133feec 776 SUPERFAMILY SSF55781 338 520 5.4E-53 T 23-04-2016 IPR029016 GAF domain-like RPE_RS03155 cce3e52656111d9816d052d5d133feec 776 SMART SM00387 646 768 2.2E-30 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS03155 cce3e52656111d9816d052d5d133feec 776 PANTHER PTHR24423 60 768 5.4E-122 T 23-04-2016 RPE_RS03155 cce3e52656111d9816d052d5d133feec 776 SUPERFAMILY SSF55785 21 138 2.23E-31 T 23-04-2016 IPR000014 PAS domain RPE_RS03155 cce3e52656111d9816d052d5d133feec 776 SUPERFAMILY SSF55781 143 328 2.7E-59 T 23-04-2016 IPR029016 GAF domain-like RPE_RS18400 837dc9db971836481a63453120df709c 325 PANTHER PTHR10992 191 306 1.4E-43 T 23-04-2016 RPE_RS18400 837dc9db971836481a63453120df709c 325 PANTHER PTHR10992 31 167 1.4E-43 T 23-04-2016 RPE_RS18400 837dc9db971836481a63453120df709c 325 SUPERFAMILY SSF53474 26 301 9.4E-58 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS18400 837dc9db971836481a63453120df709c 325 TIGRFAM TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein 30 304 6.7E-91 T 23-04-2016 IPR017497 Putative magnesium chelatase accessory protein KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00671 RPE_RS18400 837dc9db971836481a63453120df709c 325 Gene3D G3DSA:3.40.50.1820 23 301 1.2E-56 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS18400 837dc9db971836481a63453120df709c 325 PRINTS PR00111 Alpha/beta hydrolase fold signature 126 139 2.1E-6 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS18400 837dc9db971836481a63453120df709c 325 PRINTS PR00111 Alpha/beta hydrolase fold signature 251 265 2.1E-6 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS18400 837dc9db971836481a63453120df709c 325 PRINTS PR00111 Alpha/beta hydrolase fold signature 81 96 2.1E-6 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS18400 837dc9db971836481a63453120df709c 325 Pfam PF12697 Alpha/beta hydrolase family 58 297 2.7E-27 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS18790 69a5f8aaef9d2e88283723b65199c514 265 Gene3D G3DSA:1.25.40.10 49 229 1.8E-31 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS18790 69a5f8aaef9d2e88283723b65199c514 265 Pfam PF14559 Tetratricopeptide repeat 47 95 1.3E-5 T 23-04-2016 RPE_RS18790 69a5f8aaef9d2e88283723b65199c514 265 PANTHER PTHR23083 50 230 7.0E-29 T 23-04-2016 RPE_RS18790 69a5f8aaef9d2e88283723b65199c514 265 PIRSF PIRSF035836 1 264 1.5E-108 T 23-04-2016 IPR014596 Uncharacterised conserved protein UCP035836 RPE_RS18790 69a5f8aaef9d2e88283723b65199c514 265 Pfam PF13424 Tetratricopeptide repeat 143 200 1.3E-7 T 23-04-2016 RPE_RS18790 69a5f8aaef9d2e88283723b65199c514 265 SMART SM00028 69 102 60.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS18790 69a5f8aaef9d2e88283723b65199c514 265 SMART SM00028 171 204 44.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS18790 69a5f8aaef9d2e88283723b65199c514 265 SMART SM00028 137 170 0.0036 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS18790 69a5f8aaef9d2e88283723b65199c514 265 SUPERFAMILY SSF48452 66 228 3.87E-24 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS03640 be102f46f97067cd96429e40eacf3170 446 SUPERFAMILY SSF56925 244 442 4.32E-25 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RPE_RS03640 be102f46f97067cd96429e40eacf3170 446 Pfam PF13505 Outer membrane protein beta-barrel domain 239 438 2.0E-17 T 23-04-2016 IPR027385 Outer membrane protein beta-barrel RPE_RS03640 be102f46f97067cd96429e40eacf3170 446 Pfam PF13505 Outer membrane protein beta-barrel domain 10 231 4.0E-17 T 23-04-2016 IPR027385 Outer membrane protein beta-barrel RPE_RS03640 be102f46f97067cd96429e40eacf3170 446 SUPERFAMILY SSF56925 36 234 1.26E-24 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RPE_RS03640 be102f46f97067cd96429e40eacf3170 446 PANTHER PTHR34001 1 88 1.7E-50 T 23-04-2016 RPE_RS03640 be102f46f97067cd96429e40eacf3170 446 PANTHER PTHR34001 293 446 1.7E-50 T 23-04-2016 RPE_RS03640 be102f46f97067cd96429e40eacf3170 446 Gene3D G3DSA:2.40.160.20 239 444 7.0E-33 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RPE_RS03640 be102f46f97067cd96429e40eacf3170 446 Gene3D G3DSA:2.40.160.20 37 232 3.3E-30 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RPE_RS18870 f1be20fd93d30680ecbfba0d710336c4 1293 PANTHER PTHR21091:SF97 17 401 5.5E-159 T 23-04-2016 RPE_RS18870 f1be20fd93d30680ecbfba0d710336c4 1293 Pfam PF02574 Homocysteine S-methyltransferase 21 328 5.5E-91 T 23-04-2016 IPR003726 Homocysteine-binding domain RPE_RS18870 f1be20fd93d30680ecbfba0d710336c4 1293 Pfam PF00809 Pterin binding enzyme 363 601 1.7E-57 T 23-04-2016 IPR000489 Pterin-binding domain GO:0042558 RPE_RS18870 f1be20fd93d30680ecbfba0d710336c4 1293 SUPERFAMILY SSF56507 914 1238 2.62E-129 T 23-04-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 RPE_RS18870 f1be20fd93d30680ecbfba0d710336c4 1293 Pfam PF02607 B12 binding domain 660 733 7.4E-24 T 23-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain RPE_RS18870 f1be20fd93d30680ecbfba0d710336c4 1293 Gene3D G3DSA:3.40.50.280 755 906 5.7E-60 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RPE_RS18870 f1be20fd93d30680ecbfba0d710336c4 1293 SUPERFAMILY SSF51717 359 633 5.89E-90 T 23-04-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 RPE_RS18870 f1be20fd93d30680ecbfba0d710336c4 1293 Gene3D G3DSA:3.20.20.20 367 639 1.0E-114 T 23-04-2016 IPR000489 Pterin-binding domain GO:0042558 RPE_RS18870 f1be20fd93d30680ecbfba0d710336c4 1293 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 951 1220 4.9E-121 T 23-04-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 RPE_RS18870 f1be20fd93d30680ecbfba0d710336c4 1293 SUPERFAMILY SSF82282 11 402 6.15E-115 T 23-04-2016 IPR003726 Homocysteine-binding domain RPE_RS18870 f1be20fd93d30680ecbfba0d710336c4 1293 SMART SM01018 658 741 3.1E-44 T 23-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain RPE_RS18870 f1be20fd93d30680ecbfba0d710336c4 1293 SUPERFAMILY SSF47644 653 740 1.06E-27 T 23-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain RPE_RS18870 f1be20fd93d30680ecbfba0d710336c4 1293 Gene3D G3DSA:3.20.20.330 5 366 3.8E-124 T 23-04-2016 IPR003726 Homocysteine-binding domain RPE_RS18870 f1be20fd93d30680ecbfba0d710336c4 1293 TIGRFAM TIGR02082 metH: methionine synthase 17 1204 0.0 T 23-04-2016 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0008898|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 RPE_RS18870 f1be20fd93d30680ecbfba0d710336c4 1293 Gene3D G3DSA:1.10.1240.10 652 738 2.8E-38 T 23-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain RPE_RS18870 f1be20fd93d30680ecbfba0d710336c4 1293 PIRSF PIRSF000381 5 1207 0.0 T 23-04-2016 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0008898|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 RPE_RS18870 f1be20fd93d30680ecbfba0d710336c4 1293 PANTHER PTHR21091 17 401 5.5E-159 T 23-04-2016 RPE_RS18870 f1be20fd93d30680ecbfba0d710336c4 1293 Pfam PF02310 B12 binding domain 759 848 3.9E-18 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RPE_RS18870 f1be20fd93d30680ecbfba0d710336c4 1293 Gene3D G3DSA:3.10.196.10 970 1239 5.6E-109 T 23-04-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 RPE_RS18870 f1be20fd93d30680ecbfba0d710336c4 1293 SUPERFAMILY SSF52242 753 905 7.2E-41 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RPE_RS23120 2ddff14078f036dcf67cbaf39a7f1026 896 Gene3D G3DSA:3.30.450.40 507 652 9.4E-6 T 23-04-2016 IPR029016 GAF domain-like RPE_RS23120 2ddff14078f036dcf67cbaf39a7f1026 896 Pfam PF13492 GAF domain 546 645 9.5E-9 T 23-04-2016 IPR003018 GAF domain GO:0005515 RPE_RS23120 2ddff14078f036dcf67cbaf39a7f1026 896 Pfam PF00512 His Kinase A (phospho-acceptor) domain 665 732 2.3E-13 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS23120 2ddff14078f036dcf67cbaf39a7f1026 896 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 779 891 2.8E-19 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS23120 2ddff14078f036dcf67cbaf39a7f1026 896 SMART SM00387 776 893 9.7E-30 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS23120 2ddff14078f036dcf67cbaf39a7f1026 896 Pfam PF13493 Domain of unknown function (DUF4118) 402 507 2.3E-25 T 23-04-2016 IPR025201 Sensor protein KdpD, transmembrane domain RPE_RS23120 2ddff14078f036dcf67cbaf39a7f1026 896 SUPERFAMILY SSF55781 530 652 1.79E-7 T 23-04-2016 IPR029016 GAF domain-like RPE_RS23120 2ddff14078f036dcf67cbaf39a7f1026 896 Gene3D G3DSA:3.30.565.10 719 892 6.2E-38 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS23120 2ddff14078f036dcf67cbaf39a7f1026 896 SUPERFAMILY SSF52402 253 377 4.6E-9 T 23-04-2016 RPE_RS23120 2ddff14078f036dcf67cbaf39a7f1026 896 Pfam PF02702 Osmosensitive K+ channel His kinase sensor domain 24 232 1.3E-95 T 23-04-2016 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal GO:0000155|GO:0000160|GO:0004673|GO:0016020 RPE_RS23120 2ddff14078f036dcf67cbaf39a7f1026 896 Gene3D G3DSA:1.20.120.620 398 501 1.4E-25 T 23-04-2016 RPE_RS23120 2ddff14078f036dcf67cbaf39a7f1026 896 PANTHER PTHR24423:SF562 1 199 2.0E-139 T 23-04-2016 RPE_RS23120 2ddff14078f036dcf67cbaf39a7f1026 896 PANTHER PTHR24423:SF562 609 890 2.0E-139 T 23-04-2016 RPE_RS23120 2ddff14078f036dcf67cbaf39a7f1026 896 Gene3D G3DSA:1.10.287.130 657 718 1.2E-15 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS23120 2ddff14078f036dcf67cbaf39a7f1026 896 SUPERFAMILY SSF47384 656 732 3.53E-16 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS23120 2ddff14078f036dcf67cbaf39a7f1026 896 Gene3D G3DSA:3.40.50.300 22 231 3.0E-97 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS23120 2ddff14078f036dcf67cbaf39a7f1026 896 Gene3D G3DSA:3.40.50.620 246 375 2.3E-9 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS23120 2ddff14078f036dcf67cbaf39a7f1026 896 SUPERFAMILY SSF52540 29 161 5.58E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS23120 2ddff14078f036dcf67cbaf39a7f1026 896 SMART SM00388 664 732 1.1E-15 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS23120 2ddff14078f036dcf67cbaf39a7f1026 896 SUPERFAMILY SSF55874 722 891 1.7E-35 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS23120 2ddff14078f036dcf67cbaf39a7f1026 896 PANTHER PTHR24423 1 199 2.0E-139 T 23-04-2016 RPE_RS23120 2ddff14078f036dcf67cbaf39a7f1026 896 PANTHER PTHR24423 609 890 2.0E-139 T 23-04-2016 RPE_RS23120 2ddff14078f036dcf67cbaf39a7f1026 896 PRINTS PR00344 Bacterial sensor protein C-terminal signature 813 827 8.4E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS23120 2ddff14078f036dcf67cbaf39a7f1026 896 PRINTS PR00344 Bacterial sensor protein C-terminal signature 877 890 8.4E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS23120 2ddff14078f036dcf67cbaf39a7f1026 896 PRINTS PR00344 Bacterial sensor protein C-terminal signature 851 869 8.4E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS08255 8fb703e7c6a335bb4dd9c0d16172cba4 106 Gene3D G3DSA:1.20.5.780 21 100 5.5E-19 T 23-04-2016 RPE_RS08255 8fb703e7c6a335bb4dd9c0d16172cba4 106 SUPERFAMILY SSF47598 22 97 5.89E-21 T 23-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 RPE_RS08255 8fb703e7c6a335bb4dd9c0d16172cba4 106 Pfam PF08681 Protein of unknown function (DUF1778) 24 100 7.9E-24 T 23-04-2016 IPR014795 Vibrio phage ICP1, Orf50 RPE_RS08255 8fb703e7c6a335bb4dd9c0d16172cba4 106 PANTHER PTHR35401 24 106 2.6E-25 T 23-04-2016 RPE_RS19935 341bf43c73e8f7c58a4301c5213a56bd 1021 Gene3D G3DSA:3.30.2090.10 700 791 6.7E-6 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS19935 341bf43c73e8f7c58a4301c5213a56bd 1021 SUPERFAMILY SSF82714 701 789 5.89E-6 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS19935 341bf43c73e8f7c58a4301c5213a56bd 1021 Gene3D G3DSA:3.30.70.1320 270 303 8.5E-7 T 23-04-2016 RPE_RS19935 341bf43c73e8f7c58a4301c5213a56bd 1021 Gene3D G3DSA:3.30.70.1320 140 179 8.5E-7 T 23-04-2016 RPE_RS19935 341bf43c73e8f7c58a4301c5213a56bd 1021 PRINTS PR00702 Acriflavin resistance protein family signature 39 57 7.8E-52 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS19935 341bf43c73e8f7c58a4301c5213a56bd 1021 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 7.8E-52 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS19935 341bf43c73e8f7c58a4301c5213a56bd 1021 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 7.8E-52 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS19935 341bf43c73e8f7c58a4301c5213a56bd 1021 PRINTS PR00702 Acriflavin resistance protein family signature 11 35 7.8E-52 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS19935 341bf43c73e8f7c58a4301c5213a56bd 1021 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 7.8E-52 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS19935 341bf43c73e8f7c58a4301c5213a56bd 1021 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 7.8E-52 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS19935 341bf43c73e8f7c58a4301c5213a56bd 1021 PRINTS PR00702 Acriflavin resistance protein family signature 533 550 7.8E-52 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS19935 341bf43c73e8f7c58a4301c5213a56bd 1021 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 7.8E-52 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS19935 341bf43c73e8f7c58a4301c5213a56bd 1021 SUPERFAMILY SSF82693 547 649 6.54E-12 T 23-04-2016 RPE_RS19935 341bf43c73e8f7c58a4301c5213a56bd 1021 Gene3D G3DSA:3.30.70.1430 42 139 3.3E-25 T 23-04-2016 RPE_RS19935 341bf43c73e8f7c58a4301c5213a56bd 1021 SUPERFAMILY SSF82693 41 134 3.14E-22 T 23-04-2016 RPE_RS19935 341bf43c73e8f7c58a4301c5213a56bd 1021 SUPERFAMILY SSF82866 788 1009 3.53E-42 T 23-04-2016 RPE_RS19935 341bf43c73e8f7c58a4301c5213a56bd 1021 Gene3D G3DSA:3.30.2090.10 185 264 5.5E-11 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS19935 341bf43c73e8f7c58a4301c5213a56bd 1021 Pfam PF00873 AcrB/AcrD/AcrF family 4 1008 3.3E-216 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS19935 341bf43c73e8f7c58a4301c5213a56bd 1021 SUPERFAMILY SSF82693 139 182 2.59E-9 T 23-04-2016 RPE_RS19935 341bf43c73e8f7c58a4301c5213a56bd 1021 PANTHER PTHR32063 1 1016 0.0 T 23-04-2016 RPE_RS19935 341bf43c73e8f7c58a4301c5213a56bd 1021 Gene3D G3DSA:1.10.3850.10 794 1009 9.7E-49 T 23-04-2016 RPE_RS19935 341bf43c73e8f7c58a4301c5213a56bd 1021 SUPERFAMILY SSF82866 295 490 4.71E-42 T 23-04-2016 RPE_RS19935 341bf43c73e8f7c58a4301c5213a56bd 1021 Gene3D G3DSA:3.30.70.1430 549 648 8.3E-10 T 23-04-2016 RPE_RS19935 341bf43c73e8f7c58a4301c5213a56bd 1021 Gene3D G3DSA:1.20.1640.10 304 496 1.8E-47 T 23-04-2016 RPE_RS19935 341bf43c73e8f7c58a4301c5213a56bd 1021 SUPERFAMILY SSF82693 268 312 2.59E-9 T 23-04-2016 RPE_RS19935 341bf43c73e8f7c58a4301c5213a56bd 1021 PANTHER PTHR32063:SF20 1 1016 0.0 T 23-04-2016 RPE_RS19935 341bf43c73e8f7c58a4301c5213a56bd 1021 SUPERFAMILY SSF82714 184 265 5.23E-12 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS15115 bec477c02214e426a17ec98d90d69f57 352 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 322 341 2.0E-58 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS15115 bec477c02214e426a17ec98d90d69f57 352 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 292 307 2.0E-58 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS15115 bec477c02214e426a17ec98d90d69f57 352 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 146 160 2.0E-58 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS15115 bec477c02214e426a17ec98d90d69f57 352 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 214 233 2.0E-58 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS15115 bec477c02214e426a17ec98d90d69f57 352 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 176 195 2.0E-58 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS15115 bec477c02214e426a17ec98d90d69f57 352 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 267 283 2.0E-58 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS15115 bec477c02214e426a17ec98d90d69f57 352 PIRSF PIRSF001415 21 351 9.9E-152 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS15115 bec477c02214e426a17ec98d90d69f57 352 SUPERFAMILY SSF51569 24 349 2.05E-144 T 23-04-2016 RPE_RS15115 bec477c02214e426a17ec98d90d69f57 352 Pfam PF00490 Delta-aminolevulinic acid dehydratase 29 346 4.1E-144 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS15115 bec477c02214e426a17ec98d90d69f57 352 SMART SM01004 26 348 2.5E-239 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS15115 bec477c02214e426a17ec98d90d69f57 352 Gene3D G3DSA:3.20.20.70 25 350 4.6E-152 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS15115 bec477c02214e426a17ec98d90d69f57 352 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 267 279 - T 23-04-2016 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS15115 bec477c02214e426a17ec98d90d69f57 352 PANTHER PTHR11458 1 350 1.3E-191 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS05255 cd14b32cf522c593da87af22186d0140 514 Pfam PF02120 Flagellar hook-length control protein FliK 383 465 6.0E-18 T 23-04-2016 IPR021136 Flagellar hook-length control protein-like, C-terminal RPE_RS20695 5e12fe8aaeb448c19232243df426de36 430 Gene3D G3DSA:3.90.170.10 266 424 4.6E-68 T 23-04-2016 RPE_RS20695 5e12fe8aaeb448c19232243df426de36 430 Pfam PF00709 Adenylosuccinate synthetase 4 422 8.0E-168 T 23-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 RPE_RS20695 5e12fe8aaeb448c19232243df426de36 430 Gene3D G3DSA:3.40.440.10 196 265 2.3E-69 T 23-04-2016 RPE_RS20695 5e12fe8aaeb448c19232243df426de36 430 Gene3D G3DSA:3.40.440.10 1 93 2.3E-69 T 23-04-2016 RPE_RS20695 5e12fe8aaeb448c19232243df426de36 430 SUPERFAMILY SSF52540 1 424 6.27E-166 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS20695 5e12fe8aaeb448c19232243df426de36 430 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 430 206.329 T 23-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 RPE_RS20695 5e12fe8aaeb448c19232243df426de36 430 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 133 144 - T 23-04-2016 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|UniPathway: UPA00075 RPE_RS20695 5e12fe8aaeb448c19232243df426de36 430 SMART SM00788 3 423 3.0E-280 T 23-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 RPE_RS20695 5e12fe8aaeb448c19232243df426de36 430 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 5 428 8.0E-156 T 23-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 RPE_RS20695 5e12fe8aaeb448c19232243df426de36 430 PANTHER PTHR11846 2 427 3.1E-224 T 23-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 RPE_RS20695 5e12fe8aaeb448c19232243df426de36 430 Gene3D G3DSA:1.10.300.10 103 195 3.6E-26 T 23-04-2016 RPE_RS20695 5e12fe8aaeb448c19232243df426de36 430 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 10 17 - T 23-04-2016 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 RPE_RS19825 00fc7784bbec580d9f5594eed68dadb9 307 Pfam PF03466 LysR substrate binding domain 97 301 1.3E-39 T 23-04-2016 IPR005119 LysR, substrate-binding RPE_RS19825 00fc7784bbec580d9f5594eed68dadb9 307 Gene3D G3DSA:1.10.10.10 10 92 5.9E-27 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS19825 00fc7784bbec580d9f5594eed68dadb9 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 49 1.7E-8 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS19825 00fc7784bbec580d9f5594eed68dadb9 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 39 1.7E-8 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS19825 00fc7784bbec580d9f5594eed68dadb9 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 49 60 1.7E-8 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS19825 00fc7784bbec580d9f5594eed68dadb9 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 71 1.7E-21 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS19825 00fc7784bbec580d9f5594eed68dadb9 307 PANTHER PTHR30537 5 307 8.9E-98 T 23-04-2016 RPE_RS19825 00fc7784bbec580d9f5594eed68dadb9 307 PANTHER PTHR30537:SF5 5 307 8.9E-98 T 23-04-2016 RPE_RS19825 00fc7784bbec580d9f5594eed68dadb9 307 SUPERFAMILY SSF53850 99 306 3.26E-43 T 23-04-2016 RPE_RS19825 00fc7784bbec580d9f5594eed68dadb9 307 SUPERFAMILY SSF46785 9 121 9.01E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS19825 00fc7784bbec580d9f5594eed68dadb9 307 Gene3D G3DSA:3.40.190.10 186 267 1.1E-12 T 23-04-2016 RPE_RS19825 00fc7784bbec580d9f5594eed68dadb9 307 Gene3D G3DSA:3.40.190.10 101 185 5.9E-28 T 23-04-2016 RPE_RS23245 c993ed2b6c06cae2ba7ddb0ce0cc4223 1073 SUPERFAMILY SSF82866 308 508 1.57E-37 T 23-04-2016 RPE_RS23245 c993ed2b6c06cae2ba7ddb0ce0cc4223 1073 Gene3D G3DSA:1.10.3850.10 835 1062 1.7E-61 T 23-04-2016 RPE_RS23245 c993ed2b6c06cae2ba7ddb0ce0cc4223 1073 SUPERFAMILY SSF82714 192 273 3.53E-12 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS23245 c993ed2b6c06cae2ba7ddb0ce0cc4223 1073 Pfam PF00873 AcrB/AcrD/AcrF family 18 1061 3.5E-143 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS23245 c993ed2b6c06cae2ba7ddb0ce0cc4223 1073 SUPERFAMILY SSF82866 830 1063 1.11E-41 T 23-04-2016 RPE_RS23245 c993ed2b6c06cae2ba7ddb0ce0cc4223 1073 Gene3D G3DSA:3.30.2090.10 738 826 3.5E-9 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS23245 c993ed2b6c06cae2ba7ddb0ce0cc4223 1073 Gene3D G3DSA:3.30.2090.10 192 273 7.8E-11 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS23245 c993ed2b6c06cae2ba7ddb0ce0cc4223 1073 PRINTS PR00702 Acriflavin resistance protein family signature 457 480 2.5E-25 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS23245 c993ed2b6c06cae2ba7ddb0ce0cc4223 1073 PRINTS PR00702 Acriflavin resistance protein family signature 402 426 2.5E-25 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS23245 c993ed2b6c06cae2ba7ddb0ce0cc4223 1073 PRINTS PR00702 Acriflavin resistance protein family signature 374 395 2.5E-25 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS23245 c993ed2b6c06cae2ba7ddb0ce0cc4223 1073 PRINTS PR00702 Acriflavin resistance protein family signature 482 505 2.5E-25 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS23245 c993ed2b6c06cae2ba7ddb0ce0cc4223 1073 PRINTS PR00702 Acriflavin resistance protein family signature 43 61 2.5E-25 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS23245 c993ed2b6c06cae2ba7ddb0ce0cc4223 1073 PRINTS PR00702 Acriflavin resistance protein family signature 15 39 2.5E-25 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS23245 c993ed2b6c06cae2ba7ddb0ce0cc4223 1073 SUPERFAMILY SSF82693 576 690 6.28E-10 T 23-04-2016 RPE_RS23245 c993ed2b6c06cae2ba7ddb0ce0cc4223 1073 SUPERFAMILY SSF82693 285 340 5.75E-6 T 23-04-2016 RPE_RS23245 c993ed2b6c06cae2ba7ddb0ce0cc4223 1073 SUPERFAMILY SSF82693 159 190 5.75E-6 T 23-04-2016 RPE_RS23245 c993ed2b6c06cae2ba7ddb0ce0cc4223 1073 Gene3D G3DSA:3.30.70.1430 581 689 1.8E-7 T 23-04-2016 RPE_RS23245 c993ed2b6c06cae2ba7ddb0ce0cc4223 1073 Gene3D G3DSA:1.20.1640.10 304 511 1.4E-44 T 23-04-2016 RPE_RS23245 c993ed2b6c06cae2ba7ddb0ce0cc4223 1073 PANTHER PTHR32063 7 1068 0.0 T 23-04-2016 RPE_RS23245 c993ed2b6c06cae2ba7ddb0ce0cc4223 1073 Gene3D G3DSA:3.30.70.1430 45 143 4.3E-13 T 23-04-2016 RPE_RS23245 c993ed2b6c06cae2ba7ddb0ce0cc4223 1073 SUPERFAMILY SSF82714 738 828 3.01E-8 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS23245 c993ed2b6c06cae2ba7ddb0ce0cc4223 1073 PANTHER PTHR32063:SF16 7 1068 0.0 T 23-04-2016 RPE_RS23245 c993ed2b6c06cae2ba7ddb0ce0cc4223 1073 SUPERFAMILY SSF82693 45 138 5.06E-15 T 23-04-2016 RPE_RS13845 466a672de591ec0bdfd6dcac05cc57fc 389 SMART SM00388 137 201 3.6E-12 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS13845 466a672de591ec0bdfd6dcac05cc57fc 389 Pfam PF00989 PAS fold 14 117 3.2E-10 T 23-04-2016 IPR013767 PAS fold GO:0006355 RPE_RS13845 466a672de591ec0bdfd6dcac05cc57fc 389 Gene3D G3DSA:3.30.450.20 14 115 5.2E-15 T 23-04-2016 RPE_RS13845 466a672de591ec0bdfd6dcac05cc57fc 389 PANTHER PTHR24423 14 276 1.4E-98 T 23-04-2016 RPE_RS13845 466a672de591ec0bdfd6dcac05cc57fc 389 PANTHER PTHR24423 296 363 1.4E-98 T 23-04-2016 RPE_RS13845 466a672de591ec0bdfd6dcac05cc57fc 389 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 244 362 1.7E-17 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS13845 466a672de591ec0bdfd6dcac05cc57fc 389 SUPERFAMILY SSF55874 205 361 2.75E-33 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS13845 466a672de591ec0bdfd6dcac05cc57fc 389 PANTHER PTHR24423:SF520 14 276 1.4E-98 T 23-04-2016 RPE_RS13845 466a672de591ec0bdfd6dcac05cc57fc 389 PANTHER PTHR24423:SF520 296 363 1.4E-98 T 23-04-2016 RPE_RS13845 466a672de591ec0bdfd6dcac05cc57fc 389 SMART SM00091 11 78 4.2E-5 T 23-04-2016 IPR000014 PAS domain RPE_RS13845 466a672de591ec0bdfd6dcac05cc57fc 389 Pfam PF00512 His Kinase A (phospho-acceptor) domain 139 192 1.0E-12 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS13845 466a672de591ec0bdfd6dcac05cc57fc 389 SMART SM00387 242 364 1.8E-28 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS13845 466a672de591ec0bdfd6dcac05cc57fc 389 SUPERFAMILY SSF55785 14 110 9.0E-6 T 23-04-2016 IPR000014 PAS domain RPE_RS13845 466a672de591ec0bdfd6dcac05cc57fc 389 SUPERFAMILY SSF47384 132 193 7.65E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS13845 466a672de591ec0bdfd6dcac05cc57fc 389 Gene3D G3DSA:3.30.565.10 203 362 1.6E-36 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS13845 466a672de591ec0bdfd6dcac05cc57fc 389 PRINTS PR00344 Bacterial sensor protein C-terminal signature 314 324 2.2E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS13845 466a672de591ec0bdfd6dcac05cc57fc 389 PRINTS PR00344 Bacterial sensor protein C-terminal signature 325 343 2.2E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS13845 466a672de591ec0bdfd6dcac05cc57fc 389 PRINTS PR00344 Bacterial sensor protein C-terminal signature 348 361 2.2E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS13845 466a672de591ec0bdfd6dcac05cc57fc 389 PRINTS PR00344 Bacterial sensor protein C-terminal signature 296 310 2.2E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS13845 466a672de591ec0bdfd6dcac05cc57fc 389 Gene3D G3DSA:1.10.287.130 134 191 2.2E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS21120 ca476c9bcc75348fa39b02a0731e2e41 643 PANTHER PTHR24096:SF151 12 606 0.0 T 23-04-2016 RPE_RS21120 ca476c9bcc75348fa39b02a0731e2e41 643 Pfam PF00501 AMP-binding enzyme 22 470 2.1E-76 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS21120 ca476c9bcc75348fa39b02a0731e2e41 643 Gene3D G3DSA:3.40.50.980 199 291 6.4E-19 T 23-04-2016 RPE_RS21120 ca476c9bcc75348fa39b02a0731e2e41 643 Gene3D G3DSA:3.40.50.980 334 391 6.4E-19 T 23-04-2016 RPE_RS21120 ca476c9bcc75348fa39b02a0731e2e41 643 SUPERFAMILY SSF56801 12 296 1.44E-96 T 23-04-2016 RPE_RS21120 ca476c9bcc75348fa39b02a0731e2e41 643 SUPERFAMILY SSF56801 337 609 1.44E-96 T 23-04-2016 RPE_RS21120 ca476c9bcc75348fa39b02a0731e2e41 643 Gene3D G3DSA:3.30.300.30 473 593 2.1E-4 T 23-04-2016 RPE_RS21120 ca476c9bcc75348fa39b02a0731e2e41 643 Gene3D G3DSA:2.30.38.10 412 466 3.2E-14 T 23-04-2016 RPE_RS21120 ca476c9bcc75348fa39b02a0731e2e41 643 Gene3D G3DSA:3.40.50.980 11 198 6.2E-24 T 23-04-2016 RPE_RS21120 ca476c9bcc75348fa39b02a0731e2e41 643 ProSitePatterns PS00455 Putative AMP-binding domain signature. 193 204 - T 23-04-2016 IPR020845 AMP-binding, conserved site RPE_RS21120 ca476c9bcc75348fa39b02a0731e2e41 643 PANTHER PTHR24096 12 606 0.0 T 23-04-2016 RPE_RS11070 cab6a35ada6a35e60e15630e2c8621da 338 Hamap MF_01694 Biotin synthase [bioB]. 18 327 42.585 T 23-04-2016 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 RPE_RS11070 cab6a35ada6a35e60e15630e2c8621da 338 PANTHER PTHR22976 10 324 1.5E-157 T 23-04-2016 RPE_RS11070 cab6a35ada6a35e60e15630e2c8621da 338 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 233 324 5.9E-19 T 23-04-2016 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 RPE_RS11070 cab6a35ada6a35e60e15630e2c8621da 338 SMART SM00876 233 326 5.2E-45 T 23-04-2016 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 RPE_RS11070 cab6a35ada6a35e60e15630e2c8621da 338 Gene3D G3DSA:3.20.20.70 18 326 1.5E-99 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS11070 cab6a35ada6a35e60e15630e2c8621da 338 Pfam PF04055 Radical SAM superfamily 63 220 1.2E-12 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RPE_RS11070 cab6a35ada6a35e60e15630e2c8621da 338 PIRSF PIRSF001619 4 331 8.4E-134 T 23-04-2016 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 RPE_RS11070 cab6a35ada6a35e60e15630e2c8621da 338 SMART SM00729 56 263 6.4E-37 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RPE_RS11070 cab6a35ada6a35e60e15630e2c8621da 338 TIGRFAM TIGR00433 bioB: biotin synthase 27 324 8.8E-121 T 23-04-2016 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 RPE_RS11070 cab6a35ada6a35e60e15630e2c8621da 338 SUPERFAMILY SSF102114 18 325 3.14E-88 T 23-04-2016 RPE_RS11070 cab6a35ada6a35e60e15630e2c8621da 338 PANTHER PTHR22976:SF19 10 324 1.5E-157 T 23-04-2016 RPE_RS02685 d56d280ee6dc6a86ff8e4749a4f01054 379 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 229 375 2.2E-31 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS02685 d56d280ee6dc6a86ff8e4749a4f01054 379 Gene3D G3DSA:1.20.140.10 218 376 9.1E-42 T 23-04-2016 RPE_RS02685 d56d280ee6dc6a86ff8e4749a4f01054 379 PANTHER PTHR10909:SF145 1 375 1.3E-88 T 23-04-2016 RPE_RS02685 d56d280ee6dc6a86ff8e4749a4f01054 379 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 119 1.2E-23 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS02685 d56d280ee6dc6a86ff8e4749a4f01054 379 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 138 216 1.3E-9 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RPE_RS02685 d56d280ee6dc6a86ff8e4749a4f01054 379 SUPERFAMILY SSF56645 1 226 3.93E-48 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RPE_RS02685 d56d280ee6dc6a86ff8e4749a4f01054 379 Gene3D G3DSA:1.10.540.10 1 120 8.6E-24 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS02685 d56d280ee6dc6a86ff8e4749a4f01054 379 PANTHER PTHR10909 1 375 1.3E-88 T 23-04-2016 RPE_RS02685 d56d280ee6dc6a86ff8e4749a4f01054 379 SUPERFAMILY SSF47203 229 376 3.06E-39 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS02685 d56d280ee6dc6a86ff8e4749a4f01054 379 Gene3D G3DSA:2.40.110.10 131 217 2.0E-16 T 23-04-2016 RPE_RS10430 ab62a7135d2322af2cbb674f04ecea2c 240 PANTHER PTHR30582 77 231 4.5E-70 T 23-04-2016 RPE_RS10430 ab62a7135d2322af2cbb674f04ecea2c 240 SUPERFAMILY SSF141523 92 226 4.71E-34 T 23-04-2016 RPE_RS10430 ab62a7135d2322af2cbb674f04ecea2c 240 Pfam PF03734 L,D-transpeptidase catalytic domain 98 225 1.1E-20 T 23-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 RPE_RS10430 ab62a7135d2322af2cbb674f04ecea2c 240 PANTHER PTHR30582:SF1 77 231 4.5E-70 T 23-04-2016 RPE_RS10430 ab62a7135d2322af2cbb674f04ecea2c 240 Gene3D G3DSA:2.40.440.10 92 226 7.8E-36 T 23-04-2016 RPE_RS15165 c8dd702408659dc3c3f49de5b534780f 563 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 378 556 2.2E-37 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS15165 c8dd702408659dc3c3f49de5b534780f 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 323 352 8.6E-22 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS15165 c8dd702408659dc3c3f49de5b534780f 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 12 37 8.6E-22 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS15165 c8dd702408659dc3c3f49de5b534780f 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 401 428 8.6E-22 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS15165 c8dd702408659dc3c3f49de5b534780f 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 430 459 8.6E-22 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS15165 c8dd702408659dc3c3f49de5b534780f 563 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 478 507 8.6E-22 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS15165 c8dd702408659dc3c3f49de5b534780f 563 Pfam PF12729 Four helix bundle sensory module for signal transduction 4 187 5.4E-28 T 23-04-2016 IPR024478 4HB MCP domain RPE_RS15165 c8dd702408659dc3c3f49de5b534780f 563 Pfam PF00672 HAMP domain 195 262 2.3E-6 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS15165 c8dd702408659dc3c3f49de5b534780f 563 SMART SM00283 303 557 4.2E-51 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS15165 c8dd702408659dc3c3f49de5b534780f 563 PANTHER PTHR32089:SF40 154 249 2.8E-188 T 23-04-2016 RPE_RS15165 c8dd702408659dc3c3f49de5b534780f 563 PANTHER PTHR32089:SF40 281 560 2.8E-188 T 23-04-2016 RPE_RS15165 c8dd702408659dc3c3f49de5b534780f 563 Gene3D G3DSA:1.10.287.950 320 527 1.2E-50 T 23-04-2016 RPE_RS15165 c8dd702408659dc3c3f49de5b534780f 563 SUPERFAMILY SSF58104 280 556 5.75E-66 T 23-04-2016 RPE_RS15165 c8dd702408659dc3c3f49de5b534780f 563 PANTHER PTHR32089 154 249 2.8E-188 T 23-04-2016 RPE_RS15165 c8dd702408659dc3c3f49de5b534780f 563 PANTHER PTHR32089 281 560 2.8E-188 T 23-04-2016 RPE_RS09760 e4168bdaf3d819214f06aa7a0fafdfdb 481 SUPERFAMILY SSF158472 183 234 7.98E-9 T 23-04-2016 RPE_RS09760 e4168bdaf3d819214f06aa7a0fafdfdb 481 SUPERFAMILY SSF47384 220 304 1.65E-14 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS09760 e4168bdaf3d819214f06aa7a0fafdfdb 481 Pfam PF00672 HAMP domain 165 232 3.4E-15 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS09760 e4168bdaf3d819214f06aa7a0fafdfdb 481 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 350 462 1.1E-16 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS09760 e4168bdaf3d819214f06aa7a0fafdfdb 481 SMART SM00387 347 465 4.3E-24 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS09760 e4168bdaf3d819214f06aa7a0fafdfdb 481 SUPERFAMILY SSF55874 292 464 1.23E-32 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS09760 e4168bdaf3d819214f06aa7a0fafdfdb 481 Pfam PF00512 His Kinase A (phospho-acceptor) domain 240 303 2.6E-6 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS09760 e4168bdaf3d819214f06aa7a0fafdfdb 481 SMART SM00388 237 303 7.6E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS09760 e4168bdaf3d819214f06aa7a0fafdfdb 481 Gene3D G3DSA:1.10.287.130 227 299 2.2E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS09760 e4168bdaf3d819214f06aa7a0fafdfdb 481 PANTHER PTHR24423 177 464 6.3E-73 T 23-04-2016 RPE_RS09760 e4168bdaf3d819214f06aa7a0fafdfdb 481 PANTHER PTHR24423:SF556 177 464 6.3E-73 T 23-04-2016 RPE_RS09760 e4168bdaf3d819214f06aa7a0fafdfdb 481 Gene3D G3DSA:3.30.565.10 308 465 1.7E-33 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS09760 e4168bdaf3d819214f06aa7a0fafdfdb 481 PRINTS PR00344 Bacterial sensor protein C-terminal signature 426 444 5.3E-9 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS09760 e4168bdaf3d819214f06aa7a0fafdfdb 481 PRINTS PR00344 Bacterial sensor protein C-terminal signature 449 462 5.3E-9 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS09760 e4168bdaf3d819214f06aa7a0fafdfdb 481 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 407 5.3E-9 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS09760 e4168bdaf3d819214f06aa7a0fafdfdb 481 SMART SM00304 183 236 4.2E-11 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS16800 6509081fb05049f1ad9b6d12648e41a3 149 Pfam PF17200 Single Cache domain 2 37 139 4.0E-12 T 23-04-2016 IPR033480 Single Cache domain 2 RPE_RS16800 6509081fb05049f1ad9b6d12648e41a3 149 Gene3D G3DSA:3.30.450.20 31 146 7.9E-19 T 23-04-2016 RPE_RS09255 c32a5adf5ab341568fd030cab3c3495b 378 Pfam PF10098 Uncharacterised protein conserved in bacteria (DUF2336) 104 361 2.2E-65 T 23-04-2016 IPR019285 Protein of unknown function DUF2336 RPE_RS09255 c32a5adf5ab341568fd030cab3c3495b 378 PANTHER PTHR40253 10 369 3.0E-148 T 23-04-2016 RPE_RS09255 c32a5adf5ab341568fd030cab3c3495b 378 PANTHER PTHR40253:SF3 10 369 3.0E-148 T 23-04-2016 RPE_RS09775 7a5f980fc347f28e2424ccb6f0554fc6 184 Gene3D G3DSA:1.10.1740.10 5 116 2.2E-20 T 23-04-2016 RPE_RS09775 7a5f980fc347f28e2424ccb6f0554fc6 184 SUPERFAMILY SSF88946 4 110 6.54E-20 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS09775 7a5f980fc347f28e2424ccb6f0554fc6 184 Pfam PF08281 Sigma-70, region 4 122 173 1.2E-11 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS09775 7a5f980fc347f28e2424ccb6f0554fc6 184 Gene3D G3DSA:1.10.10.10 121 177 5.8E-10 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS09775 7a5f980fc347f28e2424ccb6f0554fc6 184 Pfam PF04542 Sigma-70 region 2 27 97 3.3E-11 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS09775 7a5f980fc347f28e2424ccb6f0554fc6 184 SUPERFAMILY SSF88659 110 179 2.8E-9 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS09775 7a5f980fc347f28e2424ccb6f0554fc6 184 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 22 174 1.2E-16 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS09775 7a5f980fc347f28e2424ccb6f0554fc6 184 PANTHER PTHR30173 1 176 2.6E-32 T 23-04-2016 RPE_RS09775 7a5f980fc347f28e2424ccb6f0554fc6 184 PANTHER PTHR30173:SF3 1 176 2.6E-32 T 23-04-2016 RPE_RS17995 37bdc100ac1327c15dc0206b2d894dfd 381 SUPERFAMILY SSF55729 169 307 1.19E-16 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS17995 37bdc100ac1327c15dc0206b2d894dfd 381 Pfam PF13480 Acetyltransferase (GNAT) domain 169 310 4.5E-30 T 23-04-2016 RPE_RS17995 37bdc100ac1327c15dc0206b2d894dfd 381 Gene3D G3DSA:3.40.630.30 233 310 7.2E-5 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS16450 0bb9707bf28b006e453a9633cd76e1c1 501 Pfam PF02541 Ppx/GppA phosphatase family 25 304 1.1E-46 T 23-04-2016 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40|UniPathway: UPA00908 RPE_RS16450 0bb9707bf28b006e453a9633cd76e1c1 501 PANTHER PTHR30005:SF4 2 492 9.8E-133 T 23-04-2016 RPE_RS16450 0bb9707bf28b006e453a9633cd76e1c1 501 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 12 303 6.9E-96 T 23-04-2016 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 RPE_RS16450 0bb9707bf28b006e453a9633cd76e1c1 501 Gene3D G3DSA:3.30.420.40 7 130 6.1E-39 T 23-04-2016 RPE_RS16450 0bb9707bf28b006e453a9633cd76e1c1 501 Gene3D G3DSA:3.30.420.150 135 304 2.4E-26 T 23-04-2016 RPE_RS16450 0bb9707bf28b006e453a9633cd76e1c1 501 SUPERFAMILY SSF109604 326 495 1.48E-20 T 23-04-2016 RPE_RS16450 0bb9707bf28b006e453a9633cd76e1c1 501 PANTHER PTHR30005 2 492 9.8E-133 T 23-04-2016 RPE_RS16450 0bb9707bf28b006e453a9633cd76e1c1 501 SUPERFAMILY SSF53067 135 305 5.18E-34 T 23-04-2016 RPE_RS16450 0bb9707bf28b006e453a9633cd76e1c1 501 SUPERFAMILY SSF53067 12 131 3.17E-34 T 23-04-2016 RPE_RS11520 ab1b9d7b218e61832815ab587d58d0c4 282 PANTHER PTHR33490:SF5 1 277 6.9E-138 T 23-04-2016 RPE_RS11520 ab1b9d7b218e61832815ab587d58d0c4 282 SMART SM00460 159 224 5.1E-10 T 23-04-2016 IPR002931 Transglutaminase-like RPE_RS11520 ab1b9d7b218e61832815ab587d58d0c4 282 SUPERFAMILY SSF54001 53 266 4.77E-41 T 23-04-2016 RPE_RS11520 ab1b9d7b218e61832815ab587d58d0c4 282 PANTHER PTHR33490 1 277 6.9E-138 T 23-04-2016 RPE_RS11520 ab1b9d7b218e61832815ab587d58d0c4 282 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 3 80 8.6E-17 T 23-04-2016 IPR013589 Bacterial transglutaminase-like, N-terminal RPE_RS11520 ab1b9d7b218e61832815ab587d58d0c4 282 Pfam PF01841 Transglutaminase-like superfamily 125 222 1.2E-20 T 23-04-2016 IPR002931 Transglutaminase-like RPE_RS11520 ab1b9d7b218e61832815ab587d58d0c4 282 Gene3D G3DSA:3.90.260.10 109 254 1.0E-11 T 23-04-2016 IPR002931 Transglutaminase-like RPE_RS14105 5b90ffdc376ad602e689fa27858031b0 309 PANTHER PTHR24320:SF45 1 305 6.2E-109 T 23-04-2016 RPE_RS14105 5b90ffdc376ad602e689fa27858031b0 309 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 176 195 2.7E-5 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS14105 5b90ffdc376ad602e689fa27858031b0 309 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 152 2.7E-5 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS14105 5b90ffdc376ad602e689fa27858031b0 309 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 92 103 2.7E-5 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS14105 5b90ffdc376ad602e689fa27858031b0 309 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 92 103 7.7E-14 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS14105 5b90ffdc376ad602e689fa27858031b0 309 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 199 216 7.7E-14 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS14105 5b90ffdc376ad602e689fa27858031b0 309 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 138 154 7.7E-14 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS14105 5b90ffdc376ad602e689fa27858031b0 309 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 16 33 7.7E-14 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS14105 5b90ffdc376ad602e689fa27858031b0 309 SUPERFAMILY SSF51735 12 261 7.9E-54 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS14105 5b90ffdc376ad602e689fa27858031b0 309 Pfam PF00106 short chain dehydrogenase 16 218 1.6E-31 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS14105 5b90ffdc376ad602e689fa27858031b0 309 Gene3D G3DSA:3.40.50.720 13 260 3.2E-57 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS14105 5b90ffdc376ad602e689fa27858031b0 309 PANTHER PTHR24320 1 305 6.2E-109 T 23-04-2016 RPE_RS14105 5b90ffdc376ad602e689fa27858031b0 309 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 163 191 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RPE_RS09280 e04af3e5765ed976ff3bb12fabbfeb09 454 TIGRFAM TIGR03808 RR_plus_rpt_1: twin-arg-translocated uncharacterized repeat protein 1 453 3.3E-252 T 23-04-2016 IPR022388 Conserved hypothetical protein CHP03808 RPE_RS09280 e04af3e5765ed976ff3bb12fabbfeb09 454 Pfam PF13229 Right handed beta helix region 168 312 2.6E-10 T 23-04-2016 RPE_RS09280 e04af3e5765ed976ff3bb12fabbfeb09 454 Pfam PF13229 Right handed beta helix region 318 413 1.2E-6 T 23-04-2016 RPE_RS09280 e04af3e5765ed976ff3bb12fabbfeb09 454 TIGRFAM TIGR03807 RR_fam_repeat: putative cofactor-binding repeat 341 367 4.2E-13 T 23-04-2016 IPR022444 Cofactor-binding repeat, putative RPE_RS09280 e04af3e5765ed976ff3bb12fabbfeb09 454 TIGRFAM TIGR03807 RR_fam_repeat: putative cofactor-binding repeat 368 393 3.1E-12 T 23-04-2016 IPR022444 Cofactor-binding repeat, putative RPE_RS09280 e04af3e5765ed976ff3bb12fabbfeb09 454 TIGRFAM TIGR03807 RR_fam_repeat: putative cofactor-binding repeat 311 332 8.4E-10 T 23-04-2016 IPR022444 Cofactor-binding repeat, putative RPE_RS09280 e04af3e5765ed976ff3bb12fabbfeb09 454 SUPERFAMILY SSF51126 20 391 4.76E-40 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor RPE_RS09280 e04af3e5765ed976ff3bb12fabbfeb09 454 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 3 23 2.7E-6 T 23-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RPE_RS09280 e04af3e5765ed976ff3bb12fabbfeb09 454 Gene3D G3DSA:2.160.20.10 37 331 1.1E-18 T 23-04-2016 IPR012334 Pectin lyase fold RPE_RS09280 e04af3e5765ed976ff3bb12fabbfeb09 454 SMART SM00710 379 400 770.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RPE_RS09280 e04af3e5765ed976ff3bb12fabbfeb09 454 SMART SM00710 246 276 14.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RPE_RS09280 e04af3e5765ed976ff3bb12fabbfeb09 454 SMART SM00710 293 314 1200.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RPE_RS09280 e04af3e5765ed976ff3bb12fabbfeb09 454 SMART SM00710 187 209 530.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RPE_RS09280 e04af3e5765ed976ff3bb12fabbfeb09 454 SMART SM00710 214 243 2400.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RPE_RS09280 e04af3e5765ed976ff3bb12fabbfeb09 454 SMART SM00710 142 164 3.4 T 23-04-2016 IPR006626 Parallel beta-helix repeat RPE_RS05055 50165b49400537a1c144bab49d585880 221 Pfam PF00072 Response regulator receiver domain 6 116 2.1E-14 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS05055 50165b49400537a1c144bab49d585880 221 SMART SM00448 4 116 6.7E-17 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS05055 50165b49400537a1c144bab49d585880 221 SMART SM00421 150 207 4.4E-14 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS05055 50165b49400537a1c144bab49d585880 221 SUPERFAMILY SSF52172 4 131 7.4E-19 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS05055 50165b49400537a1c144bab49d585880 221 SUPERFAMILY SSF46894 142 210 9.18E-18 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RPE_RS05055 50165b49400537a1c144bab49d585880 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 195 2.2E-11 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS05055 50165b49400537a1c144bab49d585880 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 167 183 2.2E-11 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS05055 50165b49400537a1c144bab49d585880 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 153 167 2.2E-11 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS05055 50165b49400537a1c144bab49d585880 221 Gene3D G3DSA:1.10.10.10 120 209 6.5E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS05055 50165b49400537a1c144bab49d585880 221 PANTHER PTHR26402 4 207 1.3E-37 T 23-04-2016 RPE_RS05055 50165b49400537a1c144bab49d585880 221 PANTHER PTHR26402:SF151 4 207 1.3E-37 T 23-04-2016 RPE_RS05055 50165b49400537a1c144bab49d585880 221 Gene3D G3DSA:3.40.50.2300 2 119 3.3E-19 T 23-04-2016 RPE_RS05055 50165b49400537a1c144bab49d585880 221 Pfam PF00196 Bacterial regulatory proteins, luxR family 152 206 1.0E-16 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS16060 386540984101de64340b11c844dd6297 322 SUPERFAMILY SSF53850 30 263 1.9E-46 T 23-04-2016 RPE_RS16060 386540984101de64340b11c844dd6297 322 Gene3D G3DSA:3.40.190.10 115 236 8.8E-28 T 23-04-2016 RPE_RS16060 386540984101de64340b11c844dd6297 322 PANTHER PTHR30024:SF11 1 320 6.0E-106 T 23-04-2016 RPE_RS16060 386540984101de64340b11c844dd6297 322 Pfam PF09084 NMT1/THI5 like 61 255 9.4E-13 T 23-04-2016 IPR015168 SsuA/THI5-like RPE_RS16060 386540984101de64340b11c844dd6297 322 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 33 313 4.9E-62 T 23-04-2016 IPR010067 Aliphatic sulfonates-binding protein GO:0006790|GO:0006810|GO:0016020 RPE_RS16060 386540984101de64340b11c844dd6297 322 SMART SM00062 32 251 4.8E-7 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RPE_RS16060 386540984101de64340b11c844dd6297 322 PANTHER PTHR30024 1 320 6.0E-106 T 23-04-2016 RPE_RS04000 b697fc6e73f785cd4f0d9cee8f667504 198 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 33 190 6.6E-30 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS04000 b697fc6e73f785cd4f0d9cee8f667504 198 SUPERFAMILY SSF88659 115 192 3.05E-16 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS04000 b697fc6e73f785cd4f0d9cee8f667504 198 SUPERFAMILY SSF88946 22 124 4.12E-25 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS04000 b697fc6e73f785cd4f0d9cee8f667504 198 Pfam PF04545 Sigma-70, region 4 139 188 5.1E-15 T 23-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS04000 b697fc6e73f785cd4f0d9cee8f667504 198 Pfam PF04542 Sigma-70 region 2 37 105 8.8E-19 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS04000 b697fc6e73f785cd4f0d9cee8f667504 198 PANTHER PTHR30173 8 191 1.0E-44 T 23-04-2016 RPE_RS04000 b697fc6e73f785cd4f0d9cee8f667504 198 PANTHER PTHR30173:SF31 8 191 1.0E-44 T 23-04-2016 RPE_RS04000 b697fc6e73f785cd4f0d9cee8f667504 198 Gene3D G3DSA:1.10.10.10 129 192 1.9E-18 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS04000 b697fc6e73f785cd4f0d9cee8f667504 198 Gene3D G3DSA:1.10.1740.10 21 128 7.6E-26 T 23-04-2016 RPE_RS22345 56184168f6924f365d3ddf6e379db8dd 419 PANTHER PTHR37419:SF3 5 338 6.0E-62 T 23-04-2016 RPE_RS22345 56184168f6924f365d3ddf6e379db8dd 419 PANTHER PTHR37419 5 338 6.0E-62 T 23-04-2016 RPE_RS22345 56184168f6924f365d3ddf6e379db8dd 419 Pfam PF07805 HipA-like N-terminal domain 148 227 1.2E-16 T 23-04-2016 IPR012894 HipA, N-terminal subdomain 2 RPE_RS22345 56184168f6924f365d3ddf6e379db8dd 419 Pfam PF07804 HipA-like C-terminal domain 237 381 5.0E-31 T 23-04-2016 IPR012893 HipA-like, C-terminal RPE_RS22345 56184168f6924f365d3ddf6e379db8dd 419 Pfam PF13657 HipA N-terminal domain 5 103 3.8E-23 T 23-04-2016 IPR017508 HipA, N-terminal subdomain 1 RPE_RS22345 56184168f6924f365d3ddf6e379db8dd 419 TIGRFAM TIGR03071 couple_hipA: HipA N-terminal domain 5 103 5.5E-27 T 23-04-2016 IPR017508 HipA, N-terminal subdomain 1 RPE_RS08685 4198592683adacb05bc42720ff9c9876 205 ProSitePatterns PS00622 LuxR-type HTH domain signature. 157 184 - T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS08685 4198592683adacb05bc42720ff9c9876 205 Pfam PF00072 Response regulator receiver domain 7 117 1.1E-28 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS08685 4198592683adacb05bc42720ff9c9876 205 Gene3D G3DSA:1.10.10.10 145 201 2.2E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS08685 4198592683adacb05bc42720ff9c9876 205 SUPERFAMILY SSF52172 4 128 2.7E-35 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS08685 4198592683adacb05bc42720ff9c9876 205 Pfam PF00196 Bacterial regulatory proteins, luxR family 142 197 8.1E-21 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS08685 4198592683adacb05bc42720ff9c9876 205 SMART SM00421 140 197 5.1E-20 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS08685 4198592683adacb05bc42720ff9c9876 205 Gene3D G3DSA:3.40.50.2300 6 144 3.2E-35 T 23-04-2016 RPE_RS08685 4198592683adacb05bc42720ff9c9876 205 SUPERFAMILY SSF46894 132 202 5.1E-19 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RPE_RS08685 4198592683adacb05bc42720ff9c9876 205 SMART SM00448 5 116 4.9E-32 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS08685 4198592683adacb05bc42720ff9c9876 205 PANTHER PTHR26402 5 199 3.1E-97 T 23-04-2016 RPE_RS08685 4198592683adacb05bc42720ff9c9876 205 PANTHER PTHR26402:SF613 5 199 3.1E-97 T 23-04-2016 RPE_RS08685 4198592683adacb05bc42720ff9c9876 205 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 173 185 2.2E-10 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS08685 4198592683adacb05bc42720ff9c9876 205 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 157 173 2.2E-10 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS08685 4198592683adacb05bc42720ff9c9876 205 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 143 157 2.2E-10 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS06005 ad9f86d0ccc34c55098bb2d26de7b75f 237 Gene3D G3DSA:3.40.50.2300 66 118 4.9E-6 T 23-04-2016 RPE_RS06005 ad9f86d0ccc34c55098bb2d26de7b75f 237 SUPERFAMILY SSF52172 4 124 4.1E-8 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS06005 ad9f86d0ccc34c55098bb2d26de7b75f 237 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 220 6.4E-15 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS06005 ad9f86d0ccc34c55098bb2d26de7b75f 237 PANTHER PTHR26402 67 226 1.8E-23 T 23-04-2016 RPE_RS06005 ad9f86d0ccc34c55098bb2d26de7b75f 237 Gene3D G3DSA:1.10.10.10 138 221 3.1E-19 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS06005 ad9f86d0ccc34c55098bb2d26de7b75f 237 SMART SM00862 144 220 2.8E-17 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS06005 ad9f86d0ccc34c55098bb2d26de7b75f 237 PANTHER PTHR26402:SF578 67 226 1.8E-23 T 23-04-2016 RPE_RS06005 ad9f86d0ccc34c55098bb2d26de7b75f 237 SUPERFAMILY SSF46894 136 220 2.83E-17 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RPE_RS09735 428af6973b14be48b2d706b81ac032d0 302 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 42 50 - T 23-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RPE_RS09735 428af6973b14be48b2d706b81ac032d0 302 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 13 106 1.4E-13 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RPE_RS09735 428af6973b14be48b2d706b81ac032d0 302 SUPERFAMILY SSF47240 143 286 3.09E-25 T 23-04-2016 IPR009078 Ferritin-like superfamily RPE_RS09735 428af6973b14be48b2d706b81ac032d0 302 Gene3D G3DSA:3.10.20.30 18 119 1.6E-16 T 23-04-2016 IPR012675 Beta-grasp domain RPE_RS09735 428af6973b14be48b2d706b81ac032d0 302 Gene3D G3DSA:1.20.1260.10 141 286 7.8E-38 T 23-04-2016 IPR012347 Ferritin-related RPE_RS09735 428af6973b14be48b2d706b81ac032d0 302 SUPERFAMILY SSF54292 10 114 3.01E-13 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RPE_RS17915 4e18e12e1d9ab4fdc8d58b773090f508 122 Gene3D G3DSA:2.40.150.20 1 122 3.3E-56 T 23-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RPE_RS17915 4e18e12e1d9ab4fdc8d58b773090f508 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 27.821 T 23-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RPE_RS17915 4e18e12e1d9ab4fdc8d58b773090f508 122 SMART SM01374 1 122 2.6E-87 T 23-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RPE_RS17915 4e18e12e1d9ab4fdc8d58b773090f508 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 7.2E-57 T 23-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RPE_RS17915 4e18e12e1d9ab4fdc8d58b773090f508 122 PANTHER PTHR11761 1 122 1.2E-78 T 23-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RPE_RS17915 4e18e12e1d9ab4fdc8d58b773090f508 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 4.5E-58 T 23-04-2016 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 RPE_RS17915 4e18e12e1d9ab4fdc8d58b773090f508 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 23-04-2016 IPR019972 Ribosomal protein L14P, conserved site RPE_RS17915 4e18e12e1d9ab4fdc8d58b773090f508 122 SUPERFAMILY SSF50193 1 122 3.01E-53 T 23-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RPE_RS09825 4bfd6a50e8f322cb0a7b79f0f9a2c890 167 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 22 157 4.9E-19 T 23-04-2016 IPR009936 Protein of unknown function DUF1468 RPE_RS03185 93ccea089aead29b1afab31ec63b07da 676 SUPERFAMILY SSF102114 343 403 4.71E-12 T 23-04-2016 RPE_RS03185 93ccea089aead29b1afab31ec63b07da 676 SUPERFAMILY SSF102114 433 573 4.71E-12 T 23-04-2016 RPE_RS03185 93ccea089aead29b1afab31ec63b07da 676 Hamap MF_01251 UPF0313 protein YgiQ [ygiQ]. 26 663 48.724 T 23-04-2016 IPR022946 Uncharacterised protein family UPF0313 RPE_RS03185 93ccea089aead29b1afab31ec63b07da 676 Pfam PF04055 Radical SAM superfamily 343 548 1.4E-18 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RPE_RS03185 93ccea089aead29b1afab31ec63b07da 676 Pfam PF11842 Domain of unknown function (DUF3362) 557 651 1.1E-39 T 23-04-2016 IPR024560 Uncharacterised protein family UPF0313, C-terminal RPE_RS03185 93ccea089aead29b1afab31ec63b07da 676 SMART SM00729 339 592 1.9E-4 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RPE_RS03185 93ccea089aead29b1afab31ec63b07da 676 PANTHER PTHR32331 7 673 0.0 T 23-04-2016 RPE_RS03185 93ccea089aead29b1afab31ec63b07da 676 Gene3D G3DSA:3.80.30.20 337 574 2.0E-45 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RPE_RS03185 93ccea089aead29b1afab31ec63b07da 676 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 343 363 - T 23-04-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 RPE_RS03185 93ccea089aead29b1afab31ec63b07da 676 Pfam PF08497 Radical SAM N-terminal 27 342 8.3E-145 T 23-04-2016 IPR013704 Uncharacterised protein family UPF0313, N-terminal RPE_RS03185 93ccea089aead29b1afab31ec63b07da 676 TIGRFAM TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ 27 608 8.8E-259 T 23-04-2016 IPR022946 Uncharacterised protein family UPF0313 RPE_RS03185 93ccea089aead29b1afab31ec63b07da 676 PANTHER PTHR32331:SF3 7 673 0.0 T 23-04-2016 RPE_RS11550 a826a3ade96ec3b683caf1782148ad54 340 Gene3D G3DSA:3.20.20.210 1 339 1.3E-78 T 23-04-2016 RPE_RS11550 a826a3ade96ec3b683caf1782148ad54 340 PIRSF PIRSF005632 1 340 8.3E-199 T 23-04-2016 IPR016456 Predicted cobalamin-independent methionine synthase, catalytic subunit RPE_RS11550 a826a3ade96ec3b683caf1782148ad54 340 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 3 327 2.7E-30 T 23-04-2016 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 RPE_RS11550 a826a3ade96ec3b683caf1782148ad54 340 SUPERFAMILY SSF51726 5 336 1.44E-61 T 23-04-2016 RPE_RS11550 a826a3ade96ec3b683caf1782148ad54 340 PANTHER PTHR30519 234 340 1.3E-70 T 23-04-2016 RPE_RS11550 a826a3ade96ec3b683caf1782148ad54 340 PANTHER PTHR30519 1 215 1.3E-70 T 23-04-2016 RPE_RS09215 d867a28f8c3f7cfc266475e72904dbde 280 Pfam PF04187 Haem-binding uptake, Tiki superfamily, ChaN 34 243 7.6E-66 T 23-04-2016 IPR007314 Haem-binding uptake, Tiki superfamily, ChaN RPE_RS09215 d867a28f8c3f7cfc266475e72904dbde 280 PANTHER PTHR31620 33 239 1.6E-26 T 23-04-2016 RPE_RS09215 d867a28f8c3f7cfc266475e72904dbde 280 SUPERFAMILY SSF159501 29 275 8.89E-64 T 23-04-2016 RPE_RS09215 d867a28f8c3f7cfc266475e72904dbde 280 PANTHER PTHR31620:SF8 33 239 1.6E-26 T 23-04-2016 RPE_RS23310 d7a34e8e7802da787537881136cac4d2 173 PANTHER PTHR32089 1 142 1.3E-18 T 23-04-2016 RPE_RS23310 d7a34e8e7802da787537881136cac4d2 173 Gene3D G3DSA:3.30.450.20 19 113 1.6E-20 T 23-04-2016 RPE_RS23310 d7a34e8e7802da787537881136cac4d2 173 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 22 112 2.1E-12 T 23-04-2016 IPR000014 PAS domain RPE_RS23310 d7a34e8e7802da787537881136cac4d2 173 Pfam PF08447 PAS fold 31 113 1.3E-12 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 RPE_RS23310 d7a34e8e7802da787537881136cac4d2 173 SMART SM00091 8 74 1.2E-5 T 23-04-2016 IPR000014 PAS domain RPE_RS23310 d7a34e8e7802da787537881136cac4d2 173 SUPERFAMILY SSF55785 19 114 1.11E-25 T 23-04-2016 IPR000014 PAS domain RPE_RS23310 d7a34e8e7802da787537881136cac4d2 173 PANTHER PTHR32089:SF52 1 142 1.3E-18 T 23-04-2016 RPE_RS04980 3a1b2f4dc39e301f80ba4aecc331ad50 258 PIRSF PIRSF037834 2 258 1.0E-102 T 23-04-2016 IPR011882 1,2-phenylacetyl-CoA epoxidase, subunit C GO:0010124 UniPathway: UPA00930 RPE_RS04980 3a1b2f4dc39e301f80ba4aecc331ad50 258 PANTHER PTHR30458 10 258 1.8E-126 T 23-04-2016 RPE_RS04980 3a1b2f4dc39e301f80ba4aecc331ad50 258 TIGRFAM TIGR02158 PA_CoA_Oxy3: phenylacetate-CoA oxygenase, PaaI subunit 21 258 5.2E-93 T 23-04-2016 IPR011882 1,2-phenylacetyl-CoA epoxidase, subunit C GO:0010124 UniPathway: UPA00930 RPE_RS04980 3a1b2f4dc39e301f80ba4aecc331ad50 258 Gene3D G3DSA:1.20.1260.10 11 258 5.7E-99 T 23-04-2016 IPR012347 Ferritin-related RPE_RS04980 3a1b2f4dc39e301f80ba4aecc331ad50 258 Pfam PF05138 Phenylacetic acid catabolic protein 7 258 7.2E-98 T 23-04-2016 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C GO:0010124 UniPathway: UPA00930 RPE_RS04980 3a1b2f4dc39e301f80ba4aecc331ad50 258 SUPERFAMILY SSF47240 12 252 1.14E-83 T 23-04-2016 IPR009078 Ferritin-like superfamily RPE_RS04980 3a1b2f4dc39e301f80ba4aecc331ad50 258 PANTHER PTHR30458:SF1 10 258 1.8E-126 T 23-04-2016 RPE_RS16780 f9dd05412eac157018da7101dd53f723 217 Pfam PF09976 Tetratricopeptide repeat-like domain 18 188 5.3E-16 T 23-04-2016 IPR018704 Tetratricopeptide repeat-like domain RPE_RS17050 e43fc4ddb34bda7dec3be7061bce4b24 419 Gene3D G3DSA:3.90.1150.10 6 55 2.1E-43 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS17050 e43fc4ddb34bda7dec3be7061bce4b24 419 Gene3D G3DSA:3.90.1150.10 320 417 2.1E-43 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS17050 e43fc4ddb34bda7dec3be7061bce4b24 419 SUPERFAMILY SSF53383 6 418 2.3E-117 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS17050 e43fc4ddb34bda7dec3be7061bce4b24 419 Pfam PF00202 Aminotransferase class-III 16 414 4.8E-108 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RPE_RS17050 e43fc4ddb34bda7dec3be7061bce4b24 419 PANTHER PTHR11986:SF8 7 419 5.8E-171 T 23-04-2016 RPE_RS17050 e43fc4ddb34bda7dec3be7061bce4b24 419 Gene3D G3DSA:3.40.640.10 56 317 3.1E-90 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS17050 e43fc4ddb34bda7dec3be7061bce4b24 419 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 7 414 4.0E-162 T 23-04-2016 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62|UniPathway: UPA00078 RPE_RS17050 e43fc4ddb34bda7dec3be7061bce4b24 419 PANTHER PTHR11986 7 419 5.8E-171 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RPE_RS14625 2b0bacac511a72216fbc43078cf650d0 534 PANTHER PTHR22855:SF35 1 534 0.0 T 23-04-2016 RPE_RS14625 2b0bacac511a72216fbc43078cf650d0 534 Gene3D G3DSA:3.90.226.10 35 266 5.4E-78 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS14625 2b0bacac511a72216fbc43078cf650d0 534 Gene3D G3DSA:3.90.226.10 279 529 2.2E-90 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS14625 2b0bacac511a72216fbc43078cf650d0 534 PANTHER PTHR22855 1 534 0.0 T 23-04-2016 RPE_RS14625 2b0bacac511a72216fbc43078cf650d0 534 SUPERFAMILY SSF52096 22 268 1.06E-69 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS14625 2b0bacac511a72216fbc43078cf650d0 534 Pfam PF01039 Carboxyl transferase domain 47 524 2.3E-149 T 23-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RPE_RS14625 2b0bacac511a72216fbc43078cf650d0 534 SUPERFAMILY SSF52096 274 534 2.7E-84 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS12025 6682aa68659b58a16b7ce9b22037406f 334 PANTHER PTHR10587:SF70 75 318 1.7E-89 T 23-04-2016 RPE_RS12025 6682aa68659b58a16b7ce9b22037406f 334 Pfam PF01522 Polysaccharide deacetylase 110 224 2.1E-24 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RPE_RS12025 6682aa68659b58a16b7ce9b22037406f 334 SUPERFAMILY SSF88713 108 296 2.97E-47 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RPE_RS12025 6682aa68659b58a16b7ce9b22037406f 334 PANTHER PTHR10587 75 318 1.7E-89 T 23-04-2016 RPE_RS12025 6682aa68659b58a16b7ce9b22037406f 334 Gene3D G3DSA:3.20.20.370 109 297 1.2E-51 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RPE_RS01090 5cc94364ba97a372d92c2acb47adfcf8 349 PANTHER PTHR10055 2 348 1.6E-168 T 23-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RPE_RS01090 5cc94364ba97a372d92c2acb47adfcf8 349 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 16 32 1.3E-26 T 23-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RPE_RS01090 5cc94364ba97a372d92c2acb47adfcf8 349 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 209 219 1.3E-26 T 23-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RPE_RS01090 5cc94364ba97a372d92c2acb47adfcf8 349 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 146 167 1.3E-26 T 23-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RPE_RS01090 5cc94364ba97a372d92c2acb47adfcf8 349 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 70 89 1.3E-26 T 23-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RPE_RS01090 5cc94364ba97a372d92c2acb47adfcf8 349 PANTHER PTHR10055:SF10 2 348 1.6E-168 T 23-04-2016 RPE_RS01090 5cc94364ba97a372d92c2acb47adfcf8 349 SUPERFAMILY SSF52374 5 344 9.38E-90 T 23-04-2016 RPE_RS01090 5cc94364ba97a372d92c2acb47adfcf8 349 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 12 21 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS01090 5cc94364ba97a372d92c2acb47adfcf8 349 Gene3D G3DSA:1.10.240.10 220 339 1.3E-16 T 23-04-2016 RPE_RS01090 5cc94364ba97a372d92c2acb47adfcf8 349 Pfam PF00579 tRNA synthetases class I (W and Y) 5 282 3.0E-75 T 23-04-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS01090 5cc94364ba97a372d92c2acb47adfcf8 349 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 4 344 5.6E-93 T 23-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RPE_RS01090 5cc94364ba97a372d92c2acb47adfcf8 349 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 3 345 38.448 T 23-04-2016 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2 RPE_RS01090 5cc94364ba97a372d92c2acb47adfcf8 349 Gene3D G3DSA:3.40.50.620 5 219 1.4E-85 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS18590 41f62d0eb3803322e3e6353c0c3c6993 598 PANTHER PTHR31616:SF0 4 596 4.9E-193 T 23-04-2016 RPE_RS18590 41f62d0eb3803322e3e6353c0c3c6993 598 PANTHER PTHR31616 4 596 4.9E-193 T 23-04-2016 RPE_RS18590 41f62d0eb3803322e3e6353c0c3c6993 598 Gene3D G3DSA:1.50.10.10 212 589 6.9E-82 T 23-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 RPE_RS18590 41f62d0eb3803322e3e6353c0c3c6993 598 SUPERFAMILY SSF48208 191 585 5.95E-105 T 23-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 RPE_RS18590 41f62d0eb3803322e3e6353c0c3c6993 598 Pfam PF00723 Glycosyl hydrolases family 15 216 579 2.4E-58 T 23-04-2016 IPR011613 Glycoside hydrolase family 15/Phosphorylase b kinase regulatory chain family Reactome: REACT_474 RPE_RS21080 6ae0eeacc0e809f67bf85895306b8b90 287 PANTHER PTHR10520:SF7 1 279 5.4E-143 T 23-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 RPE_RS21080 6ae0eeacc0e809f67bf85895306b8b90 287 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 8 34 4.1E-51 T 23-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 RPE_RS21080 6ae0eeacc0e809f67bf85895306b8b90 287 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 90 112 4.1E-51 T 23-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 RPE_RS21080 6ae0eeacc0e809f67bf85895306b8b90 287 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 112 139 4.1E-51 T 23-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 RPE_RS21080 6ae0eeacc0e809f67bf85895306b8b90 287 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 40 52 4.1E-51 T 23-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 RPE_RS21080 6ae0eeacc0e809f67bf85895306b8b90 287 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 237 259 4.1E-51 T 23-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 RPE_RS21080 6ae0eeacc0e809f67bf85895306b8b90 287 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 259 284 4.1E-51 T 23-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 RPE_RS21080 6ae0eeacc0e809f67bf85895306b8b90 287 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 3 285 47.57 T 23-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 RPE_RS21080 6ae0eeacc0e809f67bf85895306b8b90 287 Gene3D G3DSA:3.40.50.170 89 281 3.1E-53 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RPE_RS21080 6ae0eeacc0e809f67bf85895306b8b90 287 Pfam PF00551 Formyl transferase 90 267 1.9E-36 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RPE_RS21080 6ae0eeacc0e809f67bf85895306b8b90 287 Pfam PF01842 ACT domain 6 60 4.2E-7 T 23-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 RPE_RS21080 6ae0eeacc0e809f67bf85895306b8b90 287 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 7 285 1.6E-105 T 23-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 RPE_RS21080 6ae0eeacc0e809f67bf85895306b8b90 287 PANTHER PTHR10520 1 279 5.4E-143 T 23-04-2016 RPE_RS21080 6ae0eeacc0e809f67bf85895306b8b90 287 PIRSF PIRSF036480 3 286 1.0E-107 T 23-04-2016 RPE_RS21080 6ae0eeacc0e809f67bf85895306b8b90 287 Gene3D G3DSA:3.30.70.260 2 85 5.4E-27 T 23-04-2016 RPE_RS21080 6ae0eeacc0e809f67bf85895306b8b90 287 SUPERFAMILY SSF53328 90 285 2.75E-57 T 23-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RPE_RS21080 6ae0eeacc0e809f67bf85895306b8b90 287 SUPERFAMILY SSF55021 2 86 3.33E-18 T 23-04-2016 RPE_RS24325 bf963ac7bd8db6c9001077f5fc6e66b2 100 PANTHER PTHR33571 1 100 9.1E-15 T 23-04-2016 RPE_RS24325 bf963ac7bd8db6c9001077f5fc6e66b2 100 SUPERFAMILY SSF81301 1 99 1.01E-14 T 23-04-2016 RPE_RS24325 bf963ac7bd8db6c9001077f5fc6e66b2 100 Pfam PF01909 Nucleotidyltransferase domain 16 51 5.7E-8 T 23-04-2016 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 RPE_RS24325 bf963ac7bd8db6c9001077f5fc6e66b2 100 Gene3D G3DSA:3.30.460.10 3 97 8.1E-15 T 23-04-2016 RPE_RS19910 1a0c30d3f4de504e2658dcf96d29505c 262 PANTHER PTHR30269 1 258 1.9E-37 T 23-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 RPE_RS19910 1a0c30d3f4de504e2658dcf96d29505c 262 PANTHER PTHR30269:SF9 1 258 1.9E-37 T 23-04-2016 RPE_RS19910 1a0c30d3f4de504e2658dcf96d29505c 262 Pfam PF01925 Sulfite exporter TauE/SafE 9 248 3.0E-43 T 23-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 RPE_RS22760 29cf80fe513ec1bb57eefe80d9001722 171 SUPERFAMILY SSF88946 10 95 1.33E-11 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS22760 29cf80fe513ec1bb57eefe80d9001722 171 PANTHER PTHR30173 9 171 4.6E-36 T 23-04-2016 RPE_RS22760 29cf80fe513ec1bb57eefe80d9001722 171 Pfam PF04542 Sigma-70 region 2 16 78 8.7E-9 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS22760 29cf80fe513ec1bb57eefe80d9001722 171 Gene3D G3DSA:1.10.1740.10 13 100 3.2E-10 T 23-04-2016 RPE_RS22760 29cf80fe513ec1bb57eefe80d9001722 171 Gene3D G3DSA:1.10.10.10 109 168 3.7E-9 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS22760 29cf80fe513ec1bb57eefe80d9001722 171 SUPERFAMILY SSF88659 93 163 2.43E-10 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS22760 29cf80fe513ec1bb57eefe80d9001722 171 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 15 163 3.7E-20 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS22760 29cf80fe513ec1bb57eefe80d9001722 171 PANTHER PTHR30173:SF30 9 171 4.6E-36 T 23-04-2016 RPE_RS22760 29cf80fe513ec1bb57eefe80d9001722 171 Pfam PF08281 Sigma-70, region 4 110 162 9.4E-12 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS00010 607801996aa6629c23e4b099b813fba6 372 SMART SM00480 17 368 8.5E-125 T 23-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS00010 607801996aa6629c23e4b099b813fba6 372 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 120 3.3E-35 T 23-04-2016 IPR022634 DNA polymerase III, beta chain, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS00010 607801996aa6629c23e4b099b813fba6 372 Gene3D G3DSA:3.10.150.10 255 372 4.5E-36 T 23-04-2016 RPE_RS00010 607801996aa6629c23e4b099b813fba6 372 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 252 371 9.7E-31 T 23-04-2016 IPR022635 DNA polymerase III, beta chain, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS00010 607801996aa6629c23e4b099b813fba6 372 SUPERFAMILY SSF55979 252 372 2.02E-35 T 23-04-2016 RPE_RS00010 607801996aa6629c23e4b099b813fba6 372 SUPERFAMILY SSF55979 1 119 1.08E-26 T 23-04-2016 RPE_RS00010 607801996aa6629c23e4b099b813fba6 372 PANTHER PTHR30478 2 372 6.3E-133 T 23-04-2016 RPE_RS00010 607801996aa6629c23e4b099b813fba6 372 SUPERFAMILY SSF55979 127 250 3.01E-26 T 23-04-2016 RPE_RS00010 607801996aa6629c23e4b099b813fba6 372 PIRSF PIRSF000804 1 372 5.2E-122 T 23-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS00010 607801996aa6629c23e4b099b813fba6 372 Pfam PF02767 DNA polymerase III beta subunit, central domain 131 249 1.8E-33 T 23-04-2016 IPR022637 DNA polymerase III, beta chain, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS00010 607801996aa6629c23e4b099b813fba6 372 Gene3D G3DSA:3.10.150.10 126 254 3.5E-35 T 23-04-2016 RPE_RS00010 607801996aa6629c23e4b099b813fba6 372 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 371 1.4E-93 T 23-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS00010 607801996aa6629c23e4b099b813fba6 372 Gene3D G3DSA:3.10.150.10 1 120 5.4E-31 T 23-04-2016 RPE_RS24065 2cc5608999976c7c8d9aa825041814a8 310 PANTHER PTHR10584:SF157 6 303 9.9E-96 T 23-04-2016 RPE_RS24065 2cc5608999976c7c8d9aa825041814a8 310 PRINTS PR00990 Ribokinase signature 39 58 2.8E-6 T 23-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 RPE_RS24065 2cc5608999976c7c8d9aa825041814a8 310 PRINTS PR00990 Ribokinase signature 245 256 2.8E-6 T 23-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 RPE_RS24065 2cc5608999976c7c8d9aa825041814a8 310 PRINTS PR00990 Ribokinase signature 12 33 2.8E-6 T 23-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 RPE_RS24065 2cc5608999976c7c8d9aa825041814a8 310 SUPERFAMILY SSF53613 7 303 2.81E-59 T 23-04-2016 IPR029056 Ribokinase-like RPE_RS24065 2cc5608999976c7c8d9aa825041814a8 310 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 247 260 - T 23-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RPE_RS24065 2cc5608999976c7c8d9aa825041814a8 310 Gene3D G3DSA:3.40.1190.20 7 305 9.5E-69 T 23-04-2016 IPR029056 Ribokinase-like RPE_RS24065 2cc5608999976c7c8d9aa825041814a8 310 Pfam PF00294 pfkB family carbohydrate kinase 9 294 3.4E-39 T 23-04-2016 IPR011611 Carbohydrate kinase PfkB RPE_RS24065 2cc5608999976c7c8d9aa825041814a8 310 PANTHER PTHR10584 6 303 9.9E-96 T 23-04-2016 RPE_RS09185 556923e695c7e2f3897180e264a9f8b4 480 Gene3D G3DSA:3.40.470.10 283 477 5.9E-67 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like RPE_RS09185 556923e695c7e2f3897180e264a9f8b4 480 Pfam PF03167 Uracil DNA glycosylase superfamily 308 463 1.0E-39 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like RPE_RS09185 556923e695c7e2f3897180e264a9f8b4 480 TIGRFAM TIGR03914 UDG_fam_dom: uracil-DNA glycosylase family domain 240 470 3.1E-106 T 23-04-2016 IPR005273 Uracil-DNA glycosylase, family 4 domain RPE_RS09185 556923e695c7e2f3897180e264a9f8b4 480 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 294 459 7.7E-45 T 23-04-2016 IPR005273 Uracil-DNA glycosylase, family 4 domain RPE_RS09185 556923e695c7e2f3897180e264a9f8b4 480 SUPERFAMILY SSF52141 284 476 2.55E-57 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like RPE_RS09185 556923e695c7e2f3897180e264a9f8b4 480 SMART SM00987 308 468 5.1E-39 T 23-04-2016 RPE_RS09185 556923e695c7e2f3897180e264a9f8b4 480 SMART SM00986 308 468 5.1E-39 T 23-04-2016 IPR005122 Uracil-DNA glycosylase-like RPE_RS09185 556923e695c7e2f3897180e264a9f8b4 480 TIGRFAM TIGR03915 SAM_7_link_chp: probable DNA metabolism protein 7 238 1.2E-72 T 23-04-2016 IPR023875 DNA metabolism protein, putative RPE_RS09185 556923e695c7e2f3897180e264a9f8b4 480 Pfam PF13566 Domain of unknown function (DUF4130 79 237 1.0E-44 T 23-04-2016 IPR025404 Domain of unknown function DUF4130 RPE_RS09185 556923e695c7e2f3897180e264a9f8b4 480 PANTHER PTHR33693 143 479 1.6E-161 T 23-04-2016 RPE_RS09185 556923e695c7e2f3897180e264a9f8b4 480 PANTHER PTHR33693:SF3 143 479 1.6E-161 T 23-04-2016 RPE_RS16385 189542c87701933ca9b4d8a01dc11bfb 497 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 12 482 9.5E-158 T 23-04-2016 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 Reactome: REACT_1698 RPE_RS16385 189542c87701933ca9b4d8a01dc11bfb 497 Gene3D G3DSA:3.20.20.70 10 493 5.0E-200 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS16385 189542c87701933ca9b4d8a01dc11bfb 497 Pfam PF00571 CBS domain 97 150 2.0E-8 T 23-04-2016 IPR000644 CBS domain RPE_RS16385 189542c87701933ca9b4d8a01dc11bfb 497 Pfam PF00571 CBS domain 159 212 8.0E-5 T 23-04-2016 IPR000644 CBS domain RPE_RS16385 189542c87701933ca9b4d8a01dc11bfb 497 SUPERFAMILY SSF51412 225 486 1.15E-122 T 23-04-2016 RPE_RS16385 189542c87701933ca9b4d8a01dc11bfb 497 SUPERFAMILY SSF51412 9 94 1.15E-122 T 23-04-2016 RPE_RS16385 189542c87701933ca9b4d8a01dc11bfb 497 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 303 315 - T 23-04-2016 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 Reactome: REACT_1698 RPE_RS16385 189542c87701933ca9b4d8a01dc11bfb 497 SMART SM01240 11 482 0.0 T 23-04-2016 RPE_RS16385 189542c87701933ca9b4d8a01dc11bfb 497 PANTHER PTHR11911 308 493 7.1E-231 T 23-04-2016 RPE_RS16385 189542c87701933ca9b4d8a01dc11bfb 497 PANTHER PTHR11911 1 290 7.1E-231 T 23-04-2016 RPE_RS16385 189542c87701933ca9b4d8a01dc11bfb 497 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 12 464 1.8E-193 T 23-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 RPE_RS16385 189542c87701933ca9b4d8a01dc11bfb 497 PANTHER PTHR11911:SF6 308 493 7.1E-231 T 23-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 RPE_RS16385 189542c87701933ca9b4d8a01dc11bfb 497 PANTHER PTHR11911:SF6 1 290 7.1E-231 T 23-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 RPE_RS16385 189542c87701933ca9b4d8a01dc11bfb 497 PIRSF PIRSF000130 1 496 3.4E-201 T 23-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 RPE_RS16385 189542c87701933ca9b4d8a01dc11bfb 497 SMART SM00116 100 153 1.3E-10 T 23-04-2016 IPR000644 CBS domain RPE_RS16385 189542c87701933ca9b4d8a01dc11bfb 497 SMART SM00116 166 214 6.7E-6 T 23-04-2016 IPR000644 CBS domain RPE_RS16385 189542c87701933ca9b4d8a01dc11bfb 497 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 12 495 84.652 T 23-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 RPE_RS16385 189542c87701933ca9b4d8a01dc11bfb 497 SUPERFAMILY SSF54631 97 214 3.28E-28 T 23-04-2016 RPE_RS07565 ece983d1e2be456cfa2d20f7d93683ee 534 Pfam PF00700 Bacterial flagellin C-terminal helical region 457 532 7.1E-5 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RPE_RS07565 ece983d1e2be456cfa2d20f7d93683ee 534 SUPERFAMILY SSF64518 17 376 6.41E-32 T 23-04-2016 RPE_RS07565 ece983d1e2be456cfa2d20f7d93683ee 534 SUPERFAMILY SSF64518 457 532 6.41E-32 T 23-04-2016 RPE_RS07565 ece983d1e2be456cfa2d20f7d93683ee 534 Pfam PF00669 Bacterial flagellin N-terminal helical region 17 140 2.6E-7 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RPE_RS21530 b63a675850008016b91f6d9617d49ae1 421 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 365 374 - T 23-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 RPE_RS21530 b63a675850008016b91f6d9617d49ae1 421 PANTHER PTHR11712:SF189 9 419 5.5E-213 T 23-04-2016 RPE_RS21530 b63a675850008016b91f6d9617d49ae1 421 PRINTS PR00359 B-class P450 signature 173 188 7.0E-34 T 23-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RPE_RS21530 b63a675850008016b91f6d9617d49ae1 421 PRINTS PR00359 B-class P450 signature 363 372 7.0E-34 T 23-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RPE_RS21530 b63a675850008016b91f6d9617d49ae1 421 PRINTS PR00359 B-class P450 signature 296 307 7.0E-34 T 23-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RPE_RS21530 b63a675850008016b91f6d9617d49ae1 421 PRINTS PR00359 B-class P450 signature 110 121 7.0E-34 T 23-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RPE_RS21530 b63a675850008016b91f6d9617d49ae1 421 PRINTS PR00359 B-class P450 signature 216 238 7.0E-34 T 23-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RPE_RS21530 b63a675850008016b91f6d9617d49ae1 421 PRINTS PR00359 B-class P450 signature 372 383 7.0E-34 T 23-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RPE_RS21530 b63a675850008016b91f6d9617d49ae1 421 PRINTS PR00359 B-class P450 signature 156 172 7.0E-34 T 23-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RPE_RS21530 b63a675850008016b91f6d9617d49ae1 421 PRINTS PR00359 B-class P450 signature 341 356 7.0E-34 T 23-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RPE_RS21530 b63a675850008016b91f6d9617d49ae1 421 PRINTS PR00359 B-class P450 signature 313 340 7.0E-34 T 23-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RPE_RS21530 b63a675850008016b91f6d9617d49ae1 421 PANTHER PTHR11712 9 419 5.5E-213 T 23-04-2016 RPE_RS21530 b63a675850008016b91f6d9617d49ae1 421 SUPERFAMILY SSF48264 39 410 4.32E-88 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RPE_RS21530 b63a675850008016b91f6d9617d49ae1 421 Pfam PF00067 Cytochrome P450 230 394 3.4E-21 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RPE_RS21530 b63a675850008016b91f6d9617d49ae1 421 Gene3D G3DSA:1.10.630.10 24 420 4.8E-108 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RPE_RS21030 770665e4c0c8e8a4261a1828a6b34b81 372 PANTHER PTHR30519:SF3 1 371 9.1E-198 T 23-04-2016 RPE_RS21030 770665e4c0c8e8a4261a1828a6b34b81 372 Gene3D G3DSA:3.20.20.210 5 372 8.5E-115 T 23-04-2016 RPE_RS21030 770665e4c0c8e8a4261a1828a6b34b81 372 PANTHER PTHR30519 1 371 9.1E-198 T 23-04-2016 RPE_RS21030 770665e4c0c8e8a4261a1828a6b34b81 372 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 168 367 3.4E-7 T 23-04-2016 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 RPE_RS21030 770665e4c0c8e8a4261a1828a6b34b81 372 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 13 83 5.0E-5 T 23-04-2016 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 RPE_RS21030 770665e4c0c8e8a4261a1828a6b34b81 372 SUPERFAMILY SSF51726 11 371 5.89E-80 T 23-04-2016 RPE_RS00110 36bc7f3a6e5ab617cea9823db16a96aa 298 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 151 179 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RPE_RS00110 36bc7f3a6e5ab617cea9823db16a96aa 298 Gene3D G3DSA:3.40.50.720 2 241 2.8E-47 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS00110 36bc7f3a6e5ab617cea9823db16a96aa 298 Pfam PF00106 short chain dehydrogenase 7 197 5.7E-31 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00110 36bc7f3a6e5ab617cea9823db16a96aa 298 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 5.8E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00110 36bc7f3a6e5ab617cea9823db16a96aa 298 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 183 5.8E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00110 36bc7f3a6e5ab617cea9823db16a96aa 298 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 89 100 5.8E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00110 36bc7f3a6e5ab617cea9823db16a96aa 298 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 185 202 5.8E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00110 36bc7f3a6e5ab617cea9823db16a96aa 298 PANTHER PTHR24322 164 195 2.8E-83 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00110 36bc7f3a6e5ab617cea9823db16a96aa 298 PANTHER PTHR24322 11 146 2.8E-83 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00110 36bc7f3a6e5ab617cea9823db16a96aa 298 SUPERFAMILY SSF51735 1 245 6.53E-48 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS00110 36bc7f3a6e5ab617cea9823db16a96aa 298 PANTHER PTHR24322:SF554 164 195 2.8E-83 T 23-04-2016 RPE_RS00110 36bc7f3a6e5ab617cea9823db16a96aa 298 PANTHER PTHR24322:SF554 11 146 2.8E-83 T 23-04-2016 RPE_RS02190 eba8f56e42fcbf8043186c950ea84651 361 Pfam PF00005 ABC transporter 21 162 2.0E-29 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS02190 eba8f56e42fcbf8043186c950ea84651 361 PANTHER PTHR24220 5 329 8.0E-156 T 23-04-2016 RPE_RS02190 eba8f56e42fcbf8043186c950ea84651 361 SUPERFAMILY SSF50331 238 360 1.41E-17 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RPE_RS02190 eba8f56e42fcbf8043186c950ea84651 361 Gene3D G3DSA:2.40.50.140 266 344 3.7E-8 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS02190 eba8f56e42fcbf8043186c950ea84651 361 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS02190 eba8f56e42fcbf8043186c950ea84651 361 SUPERFAMILY SSF52540 4 244 4.2E-84 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02190 eba8f56e42fcbf8043186c950ea84651 361 Gene3D G3DSA:3.40.50.300 4 235 4.1E-74 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02190 eba8f56e42fcbf8043186c950ea84651 361 SMART SM00382 29 212 6.3E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS02190 eba8f56e42fcbf8043186c950ea84651 361 PANTHER PTHR24220:SF151 5 329 8.0E-156 T 23-04-2016 RPE_RS04295 1bf8cdef62edca82123620fd76a13891 280 TIGRFAM TIGR03871 ABC_peri_MoxJ_2: quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein 33 264 6.4E-93 T 23-04-2016 IPR022448 Quinoprotein dehydrogenase-associated RPE_RS04295 1bf8cdef62edca82123620fd76a13891 280 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 35 258 1.1E-16 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RPE_RS04295 1bf8cdef62edca82123620fd76a13891 280 SUPERFAMILY SSF53850 33 259 4.84E-27 T 23-04-2016 RPE_RS04295 1bf8cdef62edca82123620fd76a13891 280 SMART SM00062 32 263 8.5E-29 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RPE_RS04295 1bf8cdef62edca82123620fd76a13891 280 Gene3D G3DSA:3.40.190.10 113 209 9.3E-7 T 23-04-2016 RPE_RS04295 1bf8cdef62edca82123620fd76a13891 280 Gene3D G3DSA:3.40.190.10 224 259 4.9E-7 T 23-04-2016 RPE_RS04295 1bf8cdef62edca82123620fd76a13891 280 Gene3D G3DSA:3.40.190.10 30 112 4.9E-7 T 23-04-2016 RPE_RS19635 192b551bf64ae39b6dcf07445e7e8fb1 940 Gene3D G3DSA:1.10.287.560 260 321 4.3E-19 T 23-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RPE_RS19635 192b551bf64ae39b6dcf07445e7e8fb1 940 Pfam PF01584 CheW-like domain 513 646 2.5E-21 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS19635 192b551bf64ae39b6dcf07445e7e8fb1 940 SUPERFAMILY SSF55874 323 506 7.86E-40 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS19635 192b551bf64ae39b6dcf07445e7e8fb1 940 PANTHER PTHR22617:SF6 1 660 3.3E-217 T 23-04-2016 RPE_RS19635 192b551bf64ae39b6dcf07445e7e8fb1 940 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 368 507 4.3E-16 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS19635 192b551bf64ae39b6dcf07445e7e8fb1 940 Gene3D G3DSA:1.20.120.160 1 137 5.1E-32 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS19635 192b551bf64ae39b6dcf07445e7e8fb1 940 PANTHER PTHR22617 1 660 3.3E-217 T 23-04-2016 RPE_RS19635 192b551bf64ae39b6dcf07445e7e8fb1 940 SUPERFAMILY SSF47384 261 321 2.12E-13 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS19635 192b551bf64ae39b6dcf07445e7e8fb1 940 Gene3D G3DSA:3.40.50.2300 813 938 1.1E-29 T 23-04-2016 RPE_RS19635 192b551bf64ae39b6dcf07445e7e8fb1 940 SUPERFAMILY SSF52172 815 934 2.85E-29 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS19635 192b551bf64ae39b6dcf07445e7e8fb1 940 Gene3D G3DSA:2.30.30.40 508 529 3.3E-18 T 23-04-2016 RPE_RS19635 192b551bf64ae39b6dcf07445e7e8fb1 940 Gene3D G3DSA:2.30.30.40 600 643 3.3E-18 T 23-04-2016 RPE_RS19635 192b551bf64ae39b6dcf07445e7e8fb1 940 SUPERFAMILY SSF50341 672 793 1.7E-11 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS19635 192b551bf64ae39b6dcf07445e7e8fb1 940 SMART SM00387 365 508 7.7E-25 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS19635 192b551bf64ae39b6dcf07445e7e8fb1 940 SMART SM00448 814 927 1.3E-28 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS19635 192b551bf64ae39b6dcf07445e7e8fb1 940 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 261 320 2.6E-13 T 23-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RPE_RS19635 192b551bf64ae39b6dcf07445e7e8fb1 940 PRINTS PR00344 Bacterial sensor protein C-terminal signature 468 486 1.9E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS19635 192b551bf64ae39b6dcf07445e7e8fb1 940 PRINTS PR00344 Bacterial sensor protein C-terminal signature 492 505 1.9E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS19635 192b551bf64ae39b6dcf07445e7e8fb1 940 PRINTS PR00344 Bacterial sensor protein C-terminal signature 410 424 1.9E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS19635 192b551bf64ae39b6dcf07445e7e8fb1 940 PRINTS PR00344 Bacterial sensor protein C-terminal signature 452 462 1.9E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS19635 192b551bf64ae39b6dcf07445e7e8fb1 940 SMART SM00073 1 97 2.4E-23 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS19635 192b551bf64ae39b6dcf07445e7e8fb1 940 SUPERFAMILY SSF47226 1 119 5.5E-26 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS19635 192b551bf64ae39b6dcf07445e7e8fb1 940 SMART SM00260 500 644 1.2E-34 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS19635 192b551bf64ae39b6dcf07445e7e8fb1 940 Gene3D G3DSA:2.40.50.180 695 752 6.2E-7 T 23-04-2016 RPE_RS19635 192b551bf64ae39b6dcf07445e7e8fb1 940 Gene3D G3DSA:2.40.50.180 538 599 2.3E-16 T 23-04-2016 RPE_RS19635 192b551bf64ae39b6dcf07445e7e8fb1 940 Pfam PF00072 Response regulator receiver domain 816 927 1.2E-19 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS19635 192b551bf64ae39b6dcf07445e7e8fb1 940 Gene3D G3DSA:3.30.565.10 324 507 1.6E-36 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS19635 192b551bf64ae39b6dcf07445e7e8fb1 940 Pfam PF01627 Hpt domain 3 94 1.3E-15 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS19635 192b551bf64ae39b6dcf07445e7e8fb1 940 SMART SM01231 260 320 1.6E-17 T 23-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RPE_RS19635 192b551bf64ae39b6dcf07445e7e8fb1 940 SUPERFAMILY SSF50341 507 643 1.57E-27 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS17340 b60e326b5ab6ddf41eff5b4156525e2f 353 PANTHER PTHR10657 85 344 8.0E-27 T 23-04-2016 RPE_RS17340 b60e326b5ab6ddf41eff5b4156525e2f 353 SUPERFAMILY SSF109998 83 226 5.49E-12 T 23-04-2016 IPR027304 Trigger factor/SurA domain RPE_RS17340 b60e326b5ab6ddf41eff5b4156525e2f 353 PANTHER PTHR10657:SF11 85 344 8.0E-27 T 23-04-2016 RPE_RS17340 b60e326b5ab6ddf41eff5b4156525e2f 353 Pfam PF13145 PPIC-type PPIASE domain 179 309 6.5E-17 T 23-04-2016 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 RPE_RS17340 b60e326b5ab6ddf41eff5b4156525e2f 353 Gene3D G3DSA:3.10.50.40 189 319 3.0E-28 T 23-04-2016 RPE_RS17340 b60e326b5ab6ddf41eff5b4156525e2f 353 SUPERFAMILY SSF54534 194 296 2.03E-21 T 23-04-2016 RPE_RS15025 8d16cc3feb0ad8ff41d80a6392bf751f 368 PANTHER PTHR26402 7 133 2.4E-24 T 23-04-2016 RPE_RS15025 8d16cc3feb0ad8ff41d80a6392bf751f 368 PANTHER PTHR26402 248 257 2.4E-24 T 23-04-2016 RPE_RS15025 8d16cc3feb0ad8ff41d80a6392bf751f 368 Pfam PF13581 Histidine kinase-like ATPase domain 251 348 5.1E-10 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS15025 8d16cc3feb0ad8ff41d80a6392bf751f 368 SMART SM00448 7 121 2.4E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS15025 8d16cc3feb0ad8ff41d80a6392bf751f 368 SMART SM00387 256 354 3.0E-10 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS15025 8d16cc3feb0ad8ff41d80a6392bf751f 368 Gene3D G3DSA:3.30.565.10 214 352 1.3E-12 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS15025 8d16cc3feb0ad8ff41d80a6392bf751f 368 SUPERFAMILY SSF55874 225 353 7.2E-16 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS15025 8d16cc3feb0ad8ff41d80a6392bf751f 368 Pfam PF07568 Histidine kinase 161 235 1.5E-23 T 23-04-2016 IPR011495 Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain RPE_RS15025 8d16cc3feb0ad8ff41d80a6392bf751f 368 SUPERFAMILY SSF52172 7 150 1.41E-27 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS15025 8d16cc3feb0ad8ff41d80a6392bf751f 368 Pfam PF00072 Response regulator receiver domain 10 108 3.8E-22 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS15025 8d16cc3feb0ad8ff41d80a6392bf751f 368 Gene3D G3DSA:3.40.50.2300 8 134 8.4E-27 T 23-04-2016 RPE_RS03930 79b20f6411936b8be87f5f702f7fa5fe 567 Pfam PF07196 Flagellin hook IN motif 165 217 6.4E-9 T 23-04-2016 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 RPE_RS03930 79b20f6411936b8be87f5f702f7fa5fe 567 PANTHER PTHR30288 22 409 1.4E-57 T 23-04-2016 RPE_RS03930 79b20f6411936b8be87f5f702f7fa5fe 567 PANTHER PTHR30288 482 567 1.4E-57 T 23-04-2016 RPE_RS03930 79b20f6411936b8be87f5f702f7fa5fe 567 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 34 142 1.0E-13 T 23-04-2016 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 RPE_RS03930 79b20f6411936b8be87f5f702f7fa5fe 567 PANTHER PTHR30288:SF0 22 409 1.4E-57 T 23-04-2016 RPE_RS03930 79b20f6411936b8be87f5f702f7fa5fe 567 PANTHER PTHR30288:SF0 482 567 1.4E-57 T 23-04-2016 RPE_RS03930 79b20f6411936b8be87f5f702f7fa5fe 567 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 253 553 2.3E-55 T 23-04-2016 IPR010809 Flagellar hook-associated 2, C-terminal GO:0007155|GO:0009288 RPE_RS16900 9effe738d5be4a29013699a1d1ef60b0 317 PANTHER PTHR11405 13 310 1.4E-125 T 23-04-2016 RPE_RS16900 9effe738d5be4a29013699a1d1ef60b0 317 SUPERFAMILY SSF53671 12 313 3.14E-96 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RPE_RS16900 9effe738d5be4a29013699a1d1ef60b0 317 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 163 309 8.4E-24 T 23-04-2016 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 RPE_RS16900 9effe738d5be4a29013699a1d1ef60b0 317 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 60 79 9.7E-19 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RPE_RS16900 9effe738d5be4a29013699a1d1ef60b0 317 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 276 299 9.7E-19 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RPE_RS16900 9effe738d5be4a29013699a1d1ef60b0 317 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 144 155 9.7E-19 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RPE_RS16900 9effe738d5be4a29013699a1d1ef60b0 317 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 264 273 9.7E-19 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RPE_RS16900 9effe738d5be4a29013699a1d1ef60b0 317 Gene3D G3DSA:3.40.50.1370 152 290 1.3E-50 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RPE_RS16900 9effe738d5be4a29013699a1d1ef60b0 317 PANTHER PTHR11405:SF16 13 310 1.4E-125 T 23-04-2016 RPE_RS16900 9effe738d5be4a29013699a1d1ef60b0 317 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 60 67 - T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RPE_RS16900 9effe738d5be4a29013699a1d1ef60b0 317 Gene3D G3DSA:3.40.50.1370 13 151 3.3E-47 T 23-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RPE_RS16900 9effe738d5be4a29013699a1d1ef60b0 317 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 13 313 39.439 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RPE_RS16900 9effe738d5be4a29013699a1d1ef60b0 317 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 14 156 3.3E-37 T 23-04-2016 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 RPE_RS16900 9effe738d5be4a29013699a1d1ef60b0 317 PRINTS PR00101 Aspartate carbamoyltransferase signature 268 273 8.8E-30 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RPE_RS16900 9effe738d5be4a29013699a1d1ef60b0 317 PRINTS PR00101 Aspartate carbamoyltransferase signature 227 236 8.8E-30 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RPE_RS16900 9effe738d5be4a29013699a1d1ef60b0 317 PRINTS PR00101 Aspartate carbamoyltransferase signature 88 97 8.8E-30 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RPE_RS16900 9effe738d5be4a29013699a1d1ef60b0 317 PRINTS PR00101 Aspartate carbamoyltransferase signature 292 306 8.8E-30 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RPE_RS16900 9effe738d5be4a29013699a1d1ef60b0 317 PRINTS PR00101 Aspartate carbamoyltransferase signature 143 160 8.8E-30 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RPE_RS16900 9effe738d5be4a29013699a1d1ef60b0 317 PRINTS PR00101 Aspartate carbamoyltransferase signature 50 72 8.8E-30 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RPE_RS16900 9effe738d5be4a29013699a1d1ef60b0 317 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 14 310 1.2E-89 T 23-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RPE_RS15620 cdeeb43ed6a2a8eee745d3d0ba83ea91 288 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 31 281 1.6E-81 T 23-04-2016 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 RPE_RS15620 cdeeb43ed6a2a8eee745d3d0ba83ea91 288 PANTHER PTHR30043:SF5 5 288 1.8E-112 T 23-04-2016 RPE_RS15620 cdeeb43ed6a2a8eee745d3d0ba83ea91 288 SUPERFAMILY SSF161098 86 275 1.7E-28 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS15620 cdeeb43ed6a2a8eee745d3d0ba83ea91 288 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 110 273 5.8E-10 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS15620 cdeeb43ed6a2a8eee745d3d0ba83ea91 288 Gene3D G3DSA:1.10.3720.10 85 278 2.7E-22 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS15620 cdeeb43ed6a2a8eee745d3d0ba83ea91 288 PANTHER PTHR30043 5 288 1.8E-112 T 23-04-2016 RPE_RS00460 79f3ac5a5da5316c5b3a27afecae27fb 599 SMART SM01091 490 569 0.0039 T 23-04-2016 IPR005170 Transporter-associated domain RPE_RS00460 79f3ac5a5da5316c5b3a27afecae27fb 599 Pfam PF03471 Transporter associated domain 495 567 1.5E-4 T 23-04-2016 IPR005170 Transporter-associated domain RPE_RS00460 79f3ac5a5da5316c5b3a27afecae27fb 599 PANTHER PTHR32507:SF7 3 594 1.4E-236 T 23-04-2016 IPR030151 K(+)/H(+) antiporter NhaP GO:0005451|GO:0006813|GO:0016021 RPE_RS00460 79f3ac5a5da5316c5b3a27afecae27fb 599 SUPERFAMILY SSF56176 495 567 5.06E-5 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RPE_RS00460 79f3ac5a5da5316c5b3a27afecae27fb 599 PANTHER PTHR32507 3 594 1.4E-236 T 23-04-2016 RPE_RS00460 79f3ac5a5da5316c5b3a27afecae27fb 599 Pfam PF00999 Sodium/hydrogen exchanger family 13 388 5.1E-48 T 23-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RPE_RS21225 d4d58ed750a5cd4ffaf372f3c98d728c 405 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS21225 d4d58ed750a5cd4ffaf372f3c98d728c 405 Gene3D G3DSA:2.70.50.60 237 365 1.8E-7 T 23-04-2016 RPE_RS21225 d4d58ed750a5cd4ffaf372f3c98d728c 405 Gene3D G3DSA:3.40.50.300 2 221 1.8E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS21225 d4d58ed750a5cd4ffaf372f3c98d728c 405 PANTHER PTHR24220 7 222 8.6E-102 T 23-04-2016 RPE_RS21225 d4d58ed750a5cd4ffaf372f3c98d728c 405 SUPERFAMILY SSF52540 4 221 6.5E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS21225 d4d58ed750a5cd4ffaf372f3c98d728c 405 Pfam PF14524 Wzt C-terminal domain 240 365 1.2E-9 T 23-04-2016 IPR029439 Wzt, C-terminal RPE_RS21225 d4d58ed750a5cd4ffaf372f3c98d728c 405 Pfam PF00005 ABC transporter 25 156 3.2E-19 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS21225 d4d58ed750a5cd4ffaf372f3c98d728c 405 SMART SM00382 34 209 2.1E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS21225 d4d58ed750a5cd4ffaf372f3c98d728c 405 PANTHER PTHR24220:SF117 7 222 8.6E-102 T 23-04-2016 RPE_RS14735 6985c0e36f36f84f367d544dc7729cc7 403 PANTHER PTHR30163 25 403 1.3E-151 T 23-04-2016 IPR011757 Lytic transglycosylase MltB RPE_RS14735 6985c0e36f36f84f367d544dc7729cc7 403 Gene3D G3DSA:1.10.101.10 344 401 7.0E-12 T 23-04-2016 IPR002477 Peptidoglycan binding-like RPE_RS14735 6985c0e36f36f84f367d544dc7729cc7 403 Pfam PF13406 Transglycosylase SLT domain 34 322 1.4E-85 T 23-04-2016 IPR031304 Transglycosylase SLT domain 2 RPE_RS14735 6985c0e36f36f84f367d544dc7729cc7 403 SUPERFAMILY SSF47090 329 400 9.94E-14 T 23-04-2016 IPR002477 Peptidoglycan binding-like RPE_RS14735 6985c0e36f36f84f367d544dc7729cc7 403 SUPERFAMILY SSF53955 21 328 2.25E-83 T 23-04-2016 IPR023346 Lysozyme-like domain RPE_RS14735 6985c0e36f36f84f367d544dc7729cc7 403 Gene3D G3DSA:1.10.530.10 77 134 9.0E-45 T 23-04-2016 RPE_RS14735 6985c0e36f36f84f367d544dc7729cc7 403 Gene3D G3DSA:1.10.530.10 220 327 9.0E-45 T 23-04-2016 RPE_RS14735 6985c0e36f36f84f367d544dc7729cc7 403 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 34 325 6.0E-98 T 23-04-2016 IPR011970 Lytic murein transglycosylase RPE_RS14735 6985c0e36f36f84f367d544dc7729cc7 403 PANTHER PTHR30163:SF2 25 403 1.3E-151 T 23-04-2016 RPE_RS14735 6985c0e36f36f84f367d544dc7729cc7 403 Pfam PF01471 Putative peptidoglycan binding domain 344 399 1.4E-9 T 23-04-2016 IPR002477 Peptidoglycan binding-like RPE_RS03490 405477697742bcaa5569f26ccd87f4c1 191 Gene3D G3DSA:1.10.3290.10 8 191 2.4E-50 T 23-04-2016 IPR003812 Fido domain RPE_RS03490 405477697742bcaa5569f26ccd87f4c1 191 PANTHER PTHR39560 2 191 2.0E-30 T 23-04-2016 RPE_RS03490 405477697742bcaa5569f26ccd87f4c1 191 SUPERFAMILY SSF140931 47 190 1.01E-32 T 23-04-2016 IPR003812 Fido domain RPE_RS03490 405477697742bcaa5569f26ccd87f4c1 191 Pfam PF02661 Fic/DOC family 50 148 1.3E-19 T 23-04-2016 IPR003812 Fido domain RPE_RS03490 405477697742bcaa5569f26ccd87f4c1 191 PANTHER PTHR39560:SF1 2 191 2.0E-30 T 23-04-2016 RPE_RS07310 cfc763fabfe132aeaac533572f09b7b7 490 TIGRFAM TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II 347 486 2.6E-62 T 23-04-2016 IPR011914 RfaE bifunctional protein, domain II GO:0005975|GO:0016773|GO:0016779 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.7.70+2.7.1.167|UniPathway: UPA00356|UniPathway: UPA00356 RPE_RS07310 cfc763fabfe132aeaac533572f09b7b7 490 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 54 77 - T 23-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RPE_RS07310 cfc763fabfe132aeaac533572f09b7b7 490 Hamap MF_01603 Bifunctional protein HldE [hldE]. 7 488 40.213 T 23-04-2016 IPR023030 Bifunctional protein HldE GO:0016773|GO:0016779 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.7.70+2.7.1.167|UniPathway: UPA00356|UniPathway: UPA00356 RPE_RS07310 cfc763fabfe132aeaac533572f09b7b7 490 PANTHER PTHR10584:SF159 1 351 2.3E-119 T 23-04-2016 RPE_RS07310 cfc763fabfe132aeaac533572f09b7b7 490 SUPERFAMILY SSF53613 15 321 1.71E-58 T 23-04-2016 IPR029056 Ribokinase-like RPE_RS07310 cfc763fabfe132aeaac533572f09b7b7 490 Pfam PF01467 Cytidylyltransferase-like 359 451 1.2E-13 T 23-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RPE_RS07310 cfc763fabfe132aeaac533572f09b7b7 490 TIGRFAM TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I 14 322 8.0E-114 T 23-04-2016 IPR011913 RfaE bifunctional protein, domain I GO:0005975|GO:0016773|GO:0016779 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.7.70+2.7.1.167|UniPathway: UPA00356|UniPathway: UPA00356 RPE_RS07310 cfc763fabfe132aeaac533572f09b7b7 490 Pfam PF00294 pfkB family carbohydrate kinase 15 313 4.0E-45 T 23-04-2016 IPR011611 Carbohydrate kinase PfkB RPE_RS07310 cfc763fabfe132aeaac533572f09b7b7 490 Gene3D G3DSA:3.40.1190.20 15 321 9.2E-64 T 23-04-2016 IPR029056 Ribokinase-like RPE_RS07310 cfc763fabfe132aeaac533572f09b7b7 490 SUPERFAMILY SSF52374 355 482 6.76E-22 T 23-04-2016 RPE_RS07310 cfc763fabfe132aeaac533572f09b7b7 490 Gene3D G3DSA:3.40.50.620 355 472 1.2E-32 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS07310 cfc763fabfe132aeaac533572f09b7b7 490 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 356 421 2.4E-15 T 23-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RPE_RS07310 cfc763fabfe132aeaac533572f09b7b7 490 PANTHER PTHR10584 1 351 2.3E-119 T 23-04-2016 RPE_RS04030 f005c9fc50abe3b04905df3057a60879 420 SUPERFAMILY SSF51161 304 405 5.3E-16 T 23-04-2016 IPR011004 Trimeric LpxA-like RPE_RS04030 f005c9fc50abe3b04905df3057a60879 420 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 204 214 - T 23-04-2016 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 RPE_RS04030 f005c9fc50abe3b04905df3057a60879 420 PANTHER PTHR22572:SF10 14 391 1.7E-159 T 23-04-2016 RPE_RS04030 f005c9fc50abe3b04905df3057a60879 420 PANTHER PTHR22572 14 391 1.7E-159 T 23-04-2016 RPE_RS04030 f005c9fc50abe3b04905df3057a60879 420 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 14 390 5.5E-153 T 23-04-2016 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 RPE_RS04030 f005c9fc50abe3b04905df3057a60879 420 SUPERFAMILY SSF53448 371 386 1.41E-76 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS04030 f005c9fc50abe3b04905df3057a60879 420 SUPERFAMILY SSF53448 15 287 1.41E-76 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS04030 f005c9fc50abe3b04905df3057a60879 420 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 10 416 51.238 T 23-04-2016 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 RPE_RS04030 f005c9fc50abe3b04905df3057a60879 420 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 19 38 - T 23-04-2016 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 RPE_RS04030 f005c9fc50abe3b04905df3057a60879 420 Gene3D G3DSA:3.90.550.10 15 294 2.5E-74 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS04030 f005c9fc50abe3b04905df3057a60879 420 Gene3D G3DSA:3.90.550.10 337 380 2.5E-74 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS04030 f005c9fc50abe3b04905df3057a60879 420 Pfam PF00483 Nucleotidyl transferase 16 284 1.5E-64 T 23-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 RPE_RS04030 f005c9fc50abe3b04905df3057a60879 420 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 106 114 - T 23-04-2016 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 RPE_RS01840 3e8b6114d367199c7a027a7605a6ab8f 245 PANTHER PTHR21235 1 239 1.2E-104 T 23-04-2016 RPE_RS01840 3e8b6114d367199c7a027a7605a6ab8f 245 SUPERFAMILY SSF51366 2 237 1.49E-72 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 RPE_RS01840 3e8b6114d367199c7a027a7605a6ab8f 245 Pfam PF00977 Histidine biosynthesis protein 3 230 3.0E-79 T 23-04-2016 IPR006062 Histidine biosynthesis GO:0000105 RPE_RS01840 3e8b6114d367199c7a027a7605a6ab8f 245 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 4 234 1.1E-80 T 23-04-2016 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16|UniPathway: UPA00031 RPE_RS01840 3e8b6114d367199c7a027a7605a6ab8f 245 PANTHER PTHR21235:SF15 1 239 1.2E-104 T 23-04-2016 RPE_RS01840 3e8b6114d367199c7a027a7605a6ab8f 245 Gene3D G3DSA:3.20.20.70 3 238 3.3E-84 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS01840 3e8b6114d367199c7a027a7605a6ab8f 245 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 2 238 36.459 T 23-04-2016 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16|UniPathway: UPA00031 RPE_RS14025 f7e1cae576d90216f9deedf262336815 510 PANTHER PTHR24096:SF170 10 285 4.6E-51 T 23-04-2016 RPE_RS14025 f7e1cae576d90216f9deedf262336815 510 PANTHER PTHR24096 10 285 4.6E-51 T 23-04-2016 RPE_RS14025 f7e1cae576d90216f9deedf262336815 510 Gene3D G3DSA:3.40.50.980 10 142 1.4E-19 T 23-04-2016 RPE_RS14025 f7e1cae576d90216f9deedf262336815 510 Pfam PF00501 AMP-binding enzyme 15 290 1.3E-22 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS14025 f7e1cae576d90216f9deedf262336815 510 SUPERFAMILY SSF56801 7 304 1.7E-34 T 23-04-2016 RPE_RS14025 f7e1cae576d90216f9deedf262336815 510 Gene3D G3DSA:3.40.50.980 201 296 8.3E-5 T 23-04-2016 RPE_RS19410 eff18dbc26c323a8440c626a26b1f16b 462 Gene3D G3DSA:3.40.50.1980 20 166 9.0E-42 T 23-04-2016 RPE_RS19410 eff18dbc26c323a8440c626a26b1f16b 462 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 20 445 1.9E-112 T 23-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 RPE_RS19410 eff18dbc26c323a8440c626a26b1f16b 462 TIGRFAM TIGR02931 anfK_nitrog: Fe-only nitrogenase, beta subunit 2 462 1.4E-283 T 23-04-2016 IPR014280 Nitrogenase iron-iron, beta subunit GO:0009399|GO:0016163 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 RPE_RS19410 eff18dbc26c323a8440c626a26b1f16b 462 PANTHER PTHR33712 7 204 4.5E-171 T 23-04-2016 RPE_RS19410 eff18dbc26c323a8440c626a26b1f16b 462 PANTHER PTHR33712 222 462 4.5E-171 T 23-04-2016 RPE_RS19410 eff18dbc26c323a8440c626a26b1f16b 462 Gene3D G3DSA:3.40.50.1980 167 263 3.4E-28 T 23-04-2016 RPE_RS19410 eff18dbc26c323a8440c626a26b1f16b 462 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 102 116 - T 23-04-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 RPE_RS19410 eff18dbc26c323a8440c626a26b1f16b 462 SUPERFAMILY SSF53807 8 457 4.58E-125 T 23-04-2016 RPE_RS19410 eff18dbc26c323a8440c626a26b1f16b 462 PANTHER PTHR33712:SF7 7 204 4.5E-171 T 23-04-2016 RPE_RS19410 eff18dbc26c323a8440c626a26b1f16b 462 PANTHER PTHR33712:SF7 222 462 4.5E-171 T 23-04-2016 RPE_RS19410 eff18dbc26c323a8440c626a26b1f16b 462 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 38 45 - T 23-04-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 RPE_RS19410 eff18dbc26c323a8440c626a26b1f16b 462 Gene3D G3DSA:3.40.50.1980 294 421 8.4E-38 T 23-04-2016 RPE_RS11390 3b8e5e57ba9ce8c9a786974918be99f2 250 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RPE_RS11390 3b8e5e57ba9ce8c9a786974918be99f2 250 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 248 1.1E-62 T 23-04-2016 RPE_RS11390 3b8e5e57ba9ce8c9a786974918be99f2 250 SUPERFAMILY SSF51735 6 248 9.71E-82 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS11390 3b8e5e57ba9ce8c9a786974918be99f2 250 Gene3D G3DSA:3.40.50.720 1 248 1.4E-83 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS11390 3b8e5e57ba9ce8c9a786974918be99f2 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 1.4E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11390 3b8e5e57ba9ce8c9a786974918be99f2 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 1.4E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11390 3b8e5e57ba9ce8c9a786974918be99f2 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 1.4E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11390 3b8e5e57ba9ce8c9a786974918be99f2 250 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 192 0.0024 T 23-04-2016 RPE_RS11390 3b8e5e57ba9ce8c9a786974918be99f2 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 8.8E-42 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11390 3b8e5e57ba9ce8c9a786974918be99f2 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 8.8E-42 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11390 3b8e5e57ba9ce8c9a786974918be99f2 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 8.8E-42 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11390 3b8e5e57ba9ce8c9a786974918be99f2 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 8.8E-42 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11390 3b8e5e57ba9ce8c9a786974918be99f2 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 8.8E-42 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11390 3b8e5e57ba9ce8c9a786974918be99f2 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 8.8E-42 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11390 3b8e5e57ba9ce8c9a786974918be99f2 250 PANTHER PTHR24322:SF608 12 140 1.3E-61 T 23-04-2016 RPE_RS11390 3b8e5e57ba9ce8c9a786974918be99f2 250 PANTHER PTHR24322:SF608 156 188 1.3E-61 T 23-04-2016 RPE_RS11390 3b8e5e57ba9ce8c9a786974918be99f2 250 PANTHER PTHR24322 12 140 1.3E-61 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11390 3b8e5e57ba9ce8c9a786974918be99f2 250 PANTHER PTHR24322 156 188 1.3E-61 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18875 58f5df8263f8f3695c698f4b4ceec53f 500 PANTHER PTHR10196:SF44 1 491 0.0 T 23-04-2016 RPE_RS18875 58f5df8263f8f3695c698f4b4ceec53f 500 PIRSF PIRSF000538 1 498 5.0E-159 T 23-04-2016 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 RPE_RS18875 58f5df8263f8f3695c698f4b4ceec53f 500 SUPERFAMILY SSF53067 3 252 3.89E-92 T 23-04-2016 RPE_RS18875 58f5df8263f8f3695c698f4b4ceec53f 500 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 359 379 - T 23-04-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 RPE_RS18875 58f5df8263f8f3695c698f4b4ceec53f 500 Gene3D G3DSA:3.30.420.40 1 250 5.1E-98 T 23-04-2016 RPE_RS18875 58f5df8263f8f3695c698f4b4ceec53f 500 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 3 491 4.5E-205 T 23-04-2016 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 RPE_RS18875 58f5df8263f8f3695c698f4b4ceec53f 500 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 259 450 5.0E-51 T 23-04-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 RPE_RS18875 58f5df8263f8f3695c698f4b4ceec53f 500 PANTHER PTHR10196 1 491 0.0 T 23-04-2016 RPE_RS18875 58f5df8263f8f3695c698f4b4ceec53f 500 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 249 8.4E-72 T 23-04-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 RPE_RS18875 58f5df8263f8f3695c698f4b4ceec53f 500 SUPERFAMILY SSF53067 252 493 9.06E-71 T 23-04-2016 RPE_RS18875 58f5df8263f8f3695c698f4b4ceec53f 500 Gene3D G3DSA:3.30.420.40 251 491 2.7E-86 T 23-04-2016 RPE_RS18875 58f5df8263f8f3695c698f4b4ceec53f 500 Hamap MF_00186 Glycerol kinase [glpK]. 1 497 52.942 T 23-04-2016 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 RPE_RS02080 c671ba1608b6550d85a71eb0e5ba774d 417 Gene3D G3DSA:3.30.420.40 178 218 1.5E-13 T 23-04-2016 RPE_RS02080 c671ba1608b6550d85a71eb0e5ba774d 417 Gene3D G3DSA:3.30.420.40 350 389 1.5E-13 T 23-04-2016 RPE_RS02080 c671ba1608b6550d85a71eb0e5ba774d 417 PANTHER PTHR19375:SF182 2 233 6.1E-87 T 23-04-2016 RPE_RS02080 c671ba1608b6550d85a71eb0e5ba774d 417 PANTHER PTHR19375:SF182 288 408 6.1E-87 T 23-04-2016 RPE_RS02080 c671ba1608b6550d85a71eb0e5ba774d 417 Gene3D G3DSA:3.30.420.40 3 65 3.0E-26 T 23-04-2016 RPE_RS02080 c671ba1608b6550d85a71eb0e5ba774d 417 Gene3D G3DSA:3.30.420.40 98 177 3.0E-26 T 23-04-2016 RPE_RS02080 c671ba1608b6550d85a71eb0e5ba774d 417 PANTHER PTHR19375 2 233 6.1E-87 T 23-04-2016 RPE_RS02080 c671ba1608b6550d85a71eb0e5ba774d 417 PANTHER PTHR19375 288 408 6.1E-87 T 23-04-2016 RPE_RS02080 c671ba1608b6550d85a71eb0e5ba774d 417 SUPERFAMILY SSF53067 172 240 1.3E-29 T 23-04-2016 RPE_RS02080 c671ba1608b6550d85a71eb0e5ba774d 417 SUPERFAMILY SSF53067 290 412 1.3E-29 T 23-04-2016 RPE_RS02080 c671ba1608b6550d85a71eb0e5ba774d 417 Pfam PF00012 Hsp70 protein 292 388 6.2E-8 T 23-04-2016 IPR013126 Heat shock protein 70 family RPE_RS02080 c671ba1608b6550d85a71eb0e5ba774d 417 Pfam PF00012 Hsp70 protein 4 223 5.9E-11 T 23-04-2016 IPR013126 Heat shock protein 70 family RPE_RS02080 c671ba1608b6550d85a71eb0e5ba774d 417 SUPERFAMILY SSF53067 4 169 8.74E-30 T 23-04-2016 RPE_RS02165 0967129edf1c6e7f525ba9a97b0f0703 196 Gene3D G3DSA:3.30.160.100 1 97 6.3E-23 T 23-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 RPE_RS02165 0967129edf1c6e7f525ba9a97b0f0703 196 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 95 2.1E-15 T 23-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 RPE_RS02165 0967129edf1c6e7f525ba9a97b0f0703 196 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 99 1.3E-16 T 23-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 RPE_RS02165 0967129edf1c6e7f525ba9a97b0f0703 196 PANTHER PTHR33231 1 191 1.4E-40 T 23-04-2016 RPE_RS02165 0967129edf1c6e7f525ba9a97b0f0703 196 SUPERFAMILY SSF69754 1 102 1.96E-23 T 23-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 RPE_RS02165 0967129edf1c6e7f525ba9a97b0f0703 196 Pfam PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus 134 187 5.6E-15 T 23-04-2016 IPR032528 Sigma 54 modulation/S30EA ribosomal protein, C-terminal RPE_RS13170 fa1ff1b0cd0603b3ba2e93da47e5b038 341 Pfam PF14827 Double sensory domain of two-component sensor kinase 61 291 4.1E-15 T 23-04-2016 IPR029150 Double Cache domain 3 RPE_RS13170 fa1ff1b0cd0603b3ba2e93da47e5b038 341 SUPERFAMILY SSF103190 66 196 1.53E-14 T 23-04-2016 IPR029151 Periplasmic sensor domain-like RPE_RS22065 b4822ec07bed61c6f74e69d5d6054407 336 Pfam PF00348 Polyprenyl synthetase 44 286 1.9E-67 T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RPE_RS22065 b4822ec07bed61c6f74e69d5d6054407 336 SUPERFAMILY SSF48576 14 335 3.17E-93 T 23-04-2016 IPR008949 Isoprenoid synthase domain RPE_RS22065 b4822ec07bed61c6f74e69d5d6054407 336 Gene3D G3DSA:1.10.600.10 15 335 2.7E-96 T 23-04-2016 IPR008949 Isoprenoid synthase domain RPE_RS22065 b4822ec07bed61c6f74e69d5d6054407 336 PANTHER PTHR12001 20 336 1.9E-111 T 23-04-2016 IPR017446 Polyprenyl synthetase-related RPE_RS22065 b4822ec07bed61c6f74e69d5d6054407 336 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 93 107 - T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RPE_RS22065 b4822ec07bed61c6f74e69d5d6054407 336 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 215 227 - T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RPE_RS22065 b4822ec07bed61c6f74e69d5d6054407 336 PANTHER PTHR12001:SF47 20 336 1.9E-111 T 23-04-2016 RPE_RS16690 2c2d5b60c3a1463b4cea491414fef38b 1054 Gene3D G3DSA:3.30.2090.10 182 275 3.5E-30 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS16690 2c2d5b60c3a1463b4cea491414fef38b 1054 Gene3D G3DSA:3.30.2090.10 720 809 1.1E-27 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS16690 2c2d5b60c3a1463b4cea491414fef38b 1054 Gene3D G3DSA:3.30.70.1430 566 670 4.6E-36 T 23-04-2016 RPE_RS16690 2c2d5b60c3a1463b4cea491414fef38b 1054 SUPERFAMILY SSF82866 835 1025 1.29E-39 T 23-04-2016 RPE_RS16690 2c2d5b60c3a1463b4cea491414fef38b 1054 SUPERFAMILY SSF82693 564 670 4.71E-32 T 23-04-2016 RPE_RS16690 2c2d5b60c3a1463b4cea491414fef38b 1054 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 5.2E-108 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS16690 2c2d5b60c3a1463b4cea491414fef38b 1054 PRINTS PR00702 Acriflavin resistance protein family signature 620 634 5.2E-108 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS16690 2c2d5b60c3a1463b4cea491414fef38b 1054 PRINTS PR00702 Acriflavin resistance protein family signature 551 568 5.2E-108 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS16690 2c2d5b60c3a1463b4cea491414fef38b 1054 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 5.2E-108 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS16690 2c2d5b60c3a1463b4cea491414fef38b 1054 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 5.2E-108 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS16690 2c2d5b60c3a1463b4cea491414fef38b 1054 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 5.2E-108 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS16690 2c2d5b60c3a1463b4cea491414fef38b 1054 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 5.2E-108 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS16690 2c2d5b60c3a1463b4cea491414fef38b 1054 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 5.2E-108 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS16690 2c2d5b60c3a1463b4cea491414fef38b 1054 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 5.2E-108 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS16690 2c2d5b60c3a1463b4cea491414fef38b 1054 Gene3D G3DSA:3.30.70.1430 38 140 6.3E-31 T 23-04-2016 RPE_RS16690 2c2d5b60c3a1463b4cea491414fef38b 1054 SUPERFAMILY SSF82714 182 272 9.55E-25 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS16690 2c2d5b60c3a1463b4cea491414fef38b 1054 Gene3D G3DSA:3.30.70.1440 816 845 2.9E-23 T 23-04-2016 RPE_RS16690 2c2d5b60c3a1463b4cea491414fef38b 1054 Gene3D G3DSA:3.30.70.1440 671 719 2.9E-23 T 23-04-2016 RPE_RS16690 2c2d5b60c3a1463b4cea491414fef38b 1054 Gene3D G3DSA:1.20.1640.10 846 1027 6.6E-42 T 23-04-2016 RPE_RS16690 2c2d5b60c3a1463b4cea491414fef38b 1054 SUPERFAMILY SSF82866 296 498 2.75E-48 T 23-04-2016 RPE_RS16690 2c2d5b60c3a1463b4cea491414fef38b 1054 SUPERFAMILY SSF82693 671 720 1.67E-24 T 23-04-2016 RPE_RS16690 2c2d5b60c3a1463b4cea491414fef38b 1054 SUPERFAMILY SSF82693 807 855 1.67E-24 T 23-04-2016 RPE_RS16690 2c2d5b60c3a1463b4cea491414fef38b 1054 SUPERFAMILY SSF82714 721 807 8.11E-23 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS16690 2c2d5b60c3a1463b4cea491414fef38b 1054 Gene3D G3DSA:1.10.3850.10 280 498 7.7E-59 T 23-04-2016 RPE_RS16690 2c2d5b60c3a1463b4cea491414fef38b 1054 Pfam PF00873 AcrB/AcrD/AcrF family 1 1025 0.0 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS16690 2c2d5b60c3a1463b4cea491414fef38b 1054 SUPERFAMILY SSF82693 38 130 1.33E-23 T 23-04-2016 RPE_RS16690 2c2d5b60c3a1463b4cea491414fef38b 1054 PANTHER PTHR32063:SF13 1 1029 0.0 T 23-04-2016 RPE_RS16690 2c2d5b60c3a1463b4cea491414fef38b 1054 PANTHER PTHR32063 1 1029 0.0 T 23-04-2016 RPE_RS16690 2c2d5b60c3a1463b4cea491414fef38b 1054 SUPERFAMILY SSF82693 135 182 1.7E-25 T 23-04-2016 RPE_RS16690 2c2d5b60c3a1463b4cea491414fef38b 1054 SUPERFAMILY SSF82693 274 330 1.7E-25 T 23-04-2016 RPE_RS16690 2c2d5b60c3a1463b4cea491414fef38b 1054 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 2 1032 0.0 T 23-04-2016 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 RPE_RS09205 06498197ebc31c115f934b039de1bd95 1153 PANTHER PTHR32294 886 1151 0.0 T 23-04-2016 RPE_RS09205 06498197ebc31c115f934b039de1bd95 1153 PANTHER PTHR32294 2 127 0.0 T 23-04-2016 RPE_RS09205 06498197ebc31c115f934b039de1bd95 1153 PANTHER PTHR32294 162 867 0.0 T 23-04-2016 RPE_RS09205 06498197ebc31c115f934b039de1bd95 1153 Gene3D G3DSA:2.40.50.140 1008 1092 1.3E-4 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS09205 06498197ebc31c115f934b039de1bd95 1153 Pfam PF14579 Helix-hairpin-helix motif 887 937 1.9E-9 T 23-04-2016 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS09205 06498197ebc31c115f934b039de1bd95 1153 Gene3D G3DSA:3.20.20.140 13 94 1.0E-6 T 23-04-2016 RPE_RS09205 06498197ebc31c115f934b039de1bd95 1153 Gene3D G3DSA:3.20.20.140 137 287 1.0E-6 T 23-04-2016 RPE_RS09205 06498197ebc31c115f934b039de1bd95 1153 SMART SM00481 7 78 5.9E-6 T 23-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 RPE_RS09205 06498197ebc31c115f934b039de1bd95 1153 Pfam PF02811 PHP domain 12 109 1.5E-6 T 23-04-2016 IPR004013 PHP domain GO:0003824 RPE_RS09205 06498197ebc31c115f934b039de1bd95 1153 PANTHER PTHR32294:SF4 886 1151 0.0 T 23-04-2016 RPE_RS09205 06498197ebc31c115f934b039de1bd95 1153 PANTHER PTHR32294:SF4 2 127 0.0 T 23-04-2016 RPE_RS09205 06498197ebc31c115f934b039de1bd95 1153 PANTHER PTHR32294:SF4 162 867 0.0 T 23-04-2016 RPE_RS09205 06498197ebc31c115f934b039de1bd95 1153 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 197 1057 1.4E-140 T 23-04-2016 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS09205 06498197ebc31c115f934b039de1bd95 1153 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 323 753 2.0E-144 T 23-04-2016 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS09205 06498197ebc31c115f934b039de1bd95 1153 Hamap MF_01902 Error-prone DNA polymerase [dnaE2]. 6 1153 13.797 T 23-04-2016 IPR023073 DNA polymerase, error-prone GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS09205 06498197ebc31c115f934b039de1bd95 1153 Pfam PF01336 OB-fold nucleic acid binding domain 1026 1095 4.7E-8 T 23-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 RPE_RS20060 733a6b6e0d63ee77f77ac5b8aa4569e2 132 Gene3D G3DSA:1.10.10.10 10 57 5.3E-6 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS20060 733a6b6e0d63ee77f77ac5b8aa4569e2 132 Pfam PF01527 Transposase 10 72 8.8E-17 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 RPE_RS20060 733a6b6e0d63ee77f77ac5b8aa4569e2 132 SUPERFAMILY SSF48295 10 57 1.26E-10 T 23-04-2016 IPR010921 Trp repressor/replication initiator GO:0043565 RPE_RS20060 733a6b6e0d63ee77f77ac5b8aa4569e2 132 PANTHER PTHR37936 2 132 3.6E-21 T 23-04-2016 RPE_RS05095 733a6b6e0d63ee77f77ac5b8aa4569e2 132 Gene3D G3DSA:1.10.10.10 10 57 5.3E-6 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS05095 733a6b6e0d63ee77f77ac5b8aa4569e2 132 Pfam PF01527 Transposase 10 72 8.8E-17 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 RPE_RS05095 733a6b6e0d63ee77f77ac5b8aa4569e2 132 SUPERFAMILY SSF48295 10 57 1.26E-10 T 23-04-2016 IPR010921 Trp repressor/replication initiator GO:0043565 RPE_RS05095 733a6b6e0d63ee77f77ac5b8aa4569e2 132 PANTHER PTHR37936 2 132 3.6E-21 T 23-04-2016 RPE_RS17625 733a6b6e0d63ee77f77ac5b8aa4569e2 132 Gene3D G3DSA:1.10.10.10 10 57 5.3E-6 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS17625 733a6b6e0d63ee77f77ac5b8aa4569e2 132 Pfam PF01527 Transposase 10 72 8.8E-17 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 RPE_RS17625 733a6b6e0d63ee77f77ac5b8aa4569e2 132 SUPERFAMILY SSF48295 10 57 1.26E-10 T 23-04-2016 IPR010921 Trp repressor/replication initiator GO:0043565 RPE_RS17625 733a6b6e0d63ee77f77ac5b8aa4569e2 132 PANTHER PTHR37936 2 132 3.6E-21 T 23-04-2016 RPE_RS05725 733a6b6e0d63ee77f77ac5b8aa4569e2 132 Gene3D G3DSA:1.10.10.10 10 57 5.3E-6 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS05725 733a6b6e0d63ee77f77ac5b8aa4569e2 132 Pfam PF01527 Transposase 10 72 8.8E-17 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 RPE_RS05725 733a6b6e0d63ee77f77ac5b8aa4569e2 132 SUPERFAMILY SSF48295 10 57 1.26E-10 T 23-04-2016 IPR010921 Trp repressor/replication initiator GO:0043565 RPE_RS05725 733a6b6e0d63ee77f77ac5b8aa4569e2 132 PANTHER PTHR37936 2 132 3.6E-21 T 23-04-2016 RPE_RS12215 733a6b6e0d63ee77f77ac5b8aa4569e2 132 Gene3D G3DSA:1.10.10.10 10 57 5.3E-6 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS12215 733a6b6e0d63ee77f77ac5b8aa4569e2 132 Pfam PF01527 Transposase 10 72 8.8E-17 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 RPE_RS12215 733a6b6e0d63ee77f77ac5b8aa4569e2 132 SUPERFAMILY SSF48295 10 57 1.26E-10 T 23-04-2016 IPR010921 Trp repressor/replication initiator GO:0043565 RPE_RS12215 733a6b6e0d63ee77f77ac5b8aa4569e2 132 PANTHER PTHR37936 2 132 3.6E-21 T 23-04-2016 RPE_RS02395 9b72b9d4b56f214a0f429415b1d48b17 259 Gene3D G3DSA:3.90.420.10 98 256 6.2E-50 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 RPE_RS02395 9b72b9d4b56f214a0f429415b1d48b17 259 SUPERFAMILY SSF56524 57 258 8.37E-61 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 RPE_RS02395 9b72b9d4b56f214a0f429415b1d48b17 259 PANTHER PTHR19372:SF9 17 257 5.0E-117 T 23-04-2016 RPE_RS02395 9b72b9d4b56f214a0f429415b1d48b17 259 PANTHER PTHR19372 17 257 5.0E-117 T 23-04-2016 RPE_RS02395 9b72b9d4b56f214a0f429415b1d48b17 259 Pfam PF00174 Oxidoreductase molybdopterin binding domain 106 248 1.2E-29 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 RPE_RS02395 9b72b9d4b56f214a0f429415b1d48b17 259 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 27 49 1.8E-5 T 23-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RPE_RS22075 98365e55779dc561b8ff479f3af58607 298 Pfam PF08544 GHMP kinases C terminal 226 287 3.5E-9 T 23-04-2016 IPR013750 GHMP kinase, C-terminal domain RPE_RS22075 98365e55779dc561b8ff479f3af58607 298 PANTHER PTHR20861 14 292 1.7E-62 T 23-04-2016 RPE_RS22075 98365e55779dc561b8ff479f3af58607 298 Gene3D G3DSA:3.30.70.890 167 294 1.2E-28 T 23-04-2016 IPR013750 GHMP kinase, C-terminal domain RPE_RS22075 98365e55779dc561b8ff479f3af58607 298 Hamap MF_00061 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 8 297 28.599 T 23-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 RPE_RS22075 98365e55779dc561b8ff479f3af58607 298 SUPERFAMILY SSF54211 11 164 1.59E-29 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RPE_RS22075 98365e55779dc561b8ff479f3af58607 298 SUPERFAMILY SSF55060 166 293 2.12E-24 T 23-04-2016 IPR013750 GHMP kinase, C-terminal domain RPE_RS22075 98365e55779dc561b8ff479f3af58607 298 PIRSF PIRSF010376 6 298 9.9E-75 T 23-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 RPE_RS22075 98365e55779dc561b8ff479f3af58607 298 PANTHER PTHR20861:SF2 14 292 1.7E-62 T 23-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 RPE_RS22075 98365e55779dc561b8ff479f3af58607 298 Gene3D G3DSA:3.30.230.10 10 164 7.2E-41 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RPE_RS22075 98365e55779dc561b8ff479f3af58607 298 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 9 279 1.8E-43 T 23-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 RPE_RS22075 98365e55779dc561b8ff479f3af58607 298 Pfam PF00288 GHMP kinases N terminal domain 93 147 5.1E-7 T 23-04-2016 IPR006204 GHMP kinase N-terminal domain GO:0005524 RPE_RS14715 75e256847094e20490e0aeff11e71113 361 PIRSF PIRSF004911 7 357 2.9E-128 T 23-04-2016 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase RPE_RS14715 75e256847094e20490e0aeff11e71113 361 TIGRFAM TIGR00238 TIGR00238: KamA family protein 37 321 1.1E-75 T 23-04-2016 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase RPE_RS14715 75e256847094e20490e0aeff11e71113 361 Pfam PF13353 4Fe-4S single cluster domain 104 172 1.9E-5 T 23-04-2016 RPE_RS14715 75e256847094e20490e0aeff11e71113 361 Gene3D G3DSA:3.20.20.70 94 307 8.6E-20 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS14715 75e256847094e20490e0aeff11e71113 361 SUPERFAMILY SSF102114 92 333 3.92E-30 T 23-04-2016 RPE_RS14715 75e256847094e20490e0aeff11e71113 361 PANTHER PTHR30538 12 333 3.9E-116 T 23-04-2016 RPE_RS14715 75e256847094e20490e0aeff11e71113 361 Pfam PF04055 Radical SAM superfamily 109 256 5.8E-9 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RPE_RS14715 75e256847094e20490e0aeff11e71113 361 TIGRFAM TIGR03822 AblA_like_2: lysine-2,3-aminomutase-related protein 14 333 4.7E-164 T 23-04-2016 IPR022447 Lysine-2,3-aminomutase-related RPE_RS14715 75e256847094e20490e0aeff11e71113 361 PANTHER PTHR30538:SF1 12 333 3.9E-116 T 23-04-2016 RPE_RS04825 f602d41dd2eb6a3dbacdcc1acccd52d1 681 SUPERFAMILY SSF52266 102 352 5.92E-6 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain RPE_RS04825 f602d41dd2eb6a3dbacdcc1acccd52d1 681 SUPERFAMILY SSF103515 406 681 5.75E-47 T 23-04-2016 IPR005546 Autotransporter beta-domain RPE_RS04825 f602d41dd2eb6a3dbacdcc1acccd52d1 681 Pfam PF03797 Autotransporter beta-domain 408 660 2.3E-36 T 23-04-2016 IPR005546 Autotransporter beta-domain RPE_RS04825 f602d41dd2eb6a3dbacdcc1acccd52d1 681 Gene3D G3DSA:3.40.50.1110 33 357 2.8E-40 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain RPE_RS04825 f602d41dd2eb6a3dbacdcc1acccd52d1 681 SMART SM00869 410 670 8.2E-45 T 23-04-2016 IPR005546 Autotransporter beta-domain RPE_RS04825 f602d41dd2eb6a3dbacdcc1acccd52d1 681 Gene3D G3DSA:2.40.128.130 403 681 7.1E-49 T 23-04-2016 IPR005546 Autotransporter beta-domain RPE_RS02805 eb186c93e32c935de4290086e1976df1 113 SUPERFAMILY SSF46785 34 106 9.41E-8 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS02805 eb186c93e32c935de4290086e1976df1 113 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 36 83 4.3E-7 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS02805 eb186c93e32c935de4290086e1976df1 113 Gene3D G3DSA:1.10.10.10 32 106 1.7E-9 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS18765 e15c65935ea97e02b5505364252292c3 249 Pfam PF09476 Pilus biogenesis CpaD protein (pilus_cpaD) 21 228 6.4E-71 T 23-04-2016 IPR019027 Pilus biogenesis CpaD-related RPE_RS18765 e15c65935ea97e02b5505364252292c3 249 TIGRFAM TIGR02522 pilus_cpaD: pilus (Caulobacter type) biogenesis lipoprotein CpaD 20 229 1.3E-57 T 23-04-2016 IPR013361 Pilus biogenesis CpaD RPE_RS19285 d7fe26ee70a4034e0a9fac074bae9c13 240 PANTHER PTHR24220 7 233 5.9E-94 T 23-04-2016 RPE_RS19285 d7fe26ee70a4034e0a9fac074bae9c13 240 Gene3D G3DSA:3.40.50.300 2 226 1.9E-72 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS19285 d7fe26ee70a4034e0a9fac074bae9c13 240 SUPERFAMILY SSF52540 6 227 2.9E-69 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS19285 d7fe26ee70a4034e0a9fac074bae9c13 240 SMART SM00382 30 202 6.2E-16 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS19285 d7fe26ee70a4034e0a9fac074bae9c13 240 ProSitePatterns PS00211 ABC transporters family signature. 126 140 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS19285 d7fe26ee70a4034e0a9fac074bae9c13 240 Pfam PF00005 ABC transporter 21 153 2.3E-28 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS22080 7d43a0bcdb906d983a37a3262908f332 593 PANTHER PTHR23083 158 251 4.3E-43 T 23-04-2016 RPE_RS22080 7d43a0bcdb906d983a37a3262908f332 593 PANTHER PTHR23083 53 123 4.3E-43 T 23-04-2016 RPE_RS22080 7d43a0bcdb906d983a37a3262908f332 593 PANTHER PTHR23083 282 572 4.3E-43 T 23-04-2016 RPE_RS22080 7d43a0bcdb906d983a37a3262908f332 593 SMART SM00028 384 417 300.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS22080 7d43a0bcdb906d983a37a3262908f332 593 SMART SM00028 491 524 0.01 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS22080 7d43a0bcdb906d983a37a3262908f332 593 SMART SM00028 282 315 0.31 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS22080 7d43a0bcdb906d983a37a3262908f332 593 SMART SM00028 51 84 330.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS22080 7d43a0bcdb906d983a37a3262908f332 593 SMART SM00028 422 455 0.0084 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS22080 7d43a0bcdb906d983a37a3262908f332 593 SMART SM00028 456 490 75.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS22080 7d43a0bcdb906d983a37a3262908f332 593 SMART SM00028 350 383 140.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS22080 7d43a0bcdb906d983a37a3262908f332 593 SMART SM00028 316 349 110.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS22080 7d43a0bcdb906d983a37a3262908f332 593 SUPERFAMILY SSF48452 289 426 1.71E-15 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS22080 7d43a0bcdb906d983a37a3262908f332 593 SUPERFAMILY SSF48452 50 227 1.71E-15 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS22080 7d43a0bcdb906d983a37a3262908f332 593 Pfam PF13176 Tetratricopeptide repeat 318 349 0.0029 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS22080 7d43a0bcdb906d983a37a3262908f332 593 Gene3D G3DSA:1.25.40.10 280 560 8.1E-52 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS22080 7d43a0bcdb906d983a37a3262908f332 593 SUPERFAMILY SSF48452 381 558 1.59E-31 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS22080 7d43a0bcdb906d983a37a3262908f332 593 Pfam PF13414 TPR repeat 500 539 8.6E-10 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS22080 7d43a0bcdb906d983a37a3262908f332 593 Gene3D G3DSA:1.25.40.10 57 246 1.9E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS15070 c0b62c61a4e77ada97af2d6467d2ab31 757 SUPERFAMILY SSF55073 494 687 1.33E-53 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS15070 c0b62c61a4e77ada97af2d6467d2ab31 757 Gene3D G3DSA:3.30.70.1230 498 685 1.7E-42 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RPE_RS15070 c0b62c61a4e77ada97af2d6467d2ab31 757 PANTHER PTHR11920:SF341 709 726 3.5E-52 T 23-04-2016 RPE_RS15070 c0b62c61a4e77ada97af2d6467d2ab31 757 PANTHER PTHR11920 709 726 3.5E-52 T 23-04-2016 RPE_RS15070 c0b62c61a4e77ada97af2d6467d2ab31 757 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 499 680 8.7E-32 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RPE_RS15070 c0b62c61a4e77ada97af2d6467d2ab31 757 PANTHER PTHR11920 463 691 3.5E-52 T 23-04-2016 RPE_RS15070 c0b62c61a4e77ada97af2d6467d2ab31 757 SMART SM01080 53 400 1.0E-84 T 23-04-2016 IPR007890 CHASE2 RPE_RS15070 c0b62c61a4e77ada97af2d6467d2ab31 757 PANTHER PTHR11920:SF341 463 691 3.5E-52 T 23-04-2016 RPE_RS15070 c0b62c61a4e77ada97af2d6467d2ab31 757 SMART SM00044 460 669 7.4E-9 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RPE_RS15070 c0b62c61a4e77ada97af2d6467d2ab31 757 Pfam PF05226 CHASE2 domain 38 398 8.0E-56 T 23-04-2016 IPR007890 CHASE2 RPE_RS11560 9e6904fa0161dbe1bca505f432a06dcb 206 PIRSF PIRSF006386 1 206 1.3E-62 T 23-04-2016 IPR014440 HCCA isomerase/glutathione S-transferase kappa RPE_RS11560 9e6904fa0161dbe1bca505f432a06dcb 206 SUPERFAMILY SSF52833 2 202 3.64E-40 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS11560 9e6904fa0161dbe1bca505f432a06dcb 206 PANTHER PTHR13887:SF22 1 201 3.4E-81 T 23-04-2016 RPE_RS11560 9e6904fa0161dbe1bca505f432a06dcb 206 PANTHER PTHR13887 1 201 3.4E-81 T 23-04-2016 RPE_RS11560 9e6904fa0161dbe1bca505f432a06dcb 206 Gene3D G3DSA:3.40.30.10 2 199 1.6E-53 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS11560 9e6904fa0161dbe1bca505f432a06dcb 206 Pfam PF01323 DSBA-like thioredoxin domain 2 199 4.9E-37 T 23-04-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 RPE_RS09505 e1f7a4e71573f75a044e4738e39ff93b 561 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 3 28 1.3E-22 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS09505 e1f7a4e71573f75a044e4738e39ff93b 561 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 399 426 1.3E-22 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS09505 e1f7a4e71573f75a044e4738e39ff93b 561 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 476 505 1.3E-22 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS09505 e1f7a4e71573f75a044e4738e39ff93b 561 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 428 457 1.3E-22 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS09505 e1f7a4e71573f75a044e4738e39ff93b 561 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 357 554 2.5E-37 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS09505 e1f7a4e71573f75a044e4738e39ff93b 561 PANTHER PTHR32089 279 558 5.9E-178 T 23-04-2016 RPE_RS09505 e1f7a4e71573f75a044e4738e39ff93b 561 PANTHER PTHR32089 185 245 5.9E-178 T 23-04-2016 RPE_RS09505 e1f7a4e71573f75a044e4738e39ff93b 561 SMART SM00283 301 555 1.7E-52 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS09505 e1f7a4e71573f75a044e4738e39ff93b 561 SUPERFAMILY SSF58104 275 554 1.96E-64 T 23-04-2016 RPE_RS09505 e1f7a4e71573f75a044e4738e39ff93b 561 PANTHER PTHR32089:SF40 279 558 5.9E-178 T 23-04-2016 RPE_RS09505 e1f7a4e71573f75a044e4738e39ff93b 561 Pfam PF00672 HAMP domain 191 252 3.2E-7 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS09505 e1f7a4e71573f75a044e4738e39ff93b 561 PANTHER PTHR32089 118 153 5.9E-178 T 23-04-2016 RPE_RS09505 e1f7a4e71573f75a044e4738e39ff93b 561 Gene3D G3DSA:1.10.287.950 319 525 1.3E-49 T 23-04-2016 RPE_RS09505 e1f7a4e71573f75a044e4738e39ff93b 561 PANTHER PTHR32089:SF40 118 153 5.9E-178 T 23-04-2016 RPE_RS09505 e1f7a4e71573f75a044e4738e39ff93b 561 PANTHER PTHR32089:SF40 185 245 5.9E-178 T 23-04-2016 RPE_RS11915 a87f71a5c3c0b3e5043805aa2dc1503d 509 PANTHER PTHR24096 1 505 1.0E-129 T 23-04-2016 RPE_RS11915 a87f71a5c3c0b3e5043805aa2dc1503d 509 ProSitePatterns PS00455 Putative AMP-binding domain signature. 158 169 - T 23-04-2016 IPR020845 AMP-binding, conserved site RPE_RS11915 a87f71a5c3c0b3e5043805aa2dc1503d 509 PRINTS PR00154 AMP-binding signature 165 173 8.6E-5 T 23-04-2016 IPR020459 AMP-binding RPE_RS11915 a87f71a5c3c0b3e5043805aa2dc1503d 509 PRINTS PR00154 AMP-binding signature 153 164 8.6E-5 T 23-04-2016 IPR020459 AMP-binding RPE_RS11915 a87f71a5c3c0b3e5043805aa2dc1503d 509 PANTHER PTHR24096:SF240 1 505 1.0E-129 T 23-04-2016 RPE_RS11915 a87f71a5c3c0b3e5043805aa2dc1503d 509 Gene3D G3DSA:3.30.300.30 408 507 4.3E-32 T 23-04-2016 RPE_RS11915 a87f71a5c3c0b3e5043805aa2dc1503d 509 SUPERFAMILY SSF56801 2 509 5.76E-135 T 23-04-2016 RPE_RS11915 a87f71a5c3c0b3e5043805aa2dc1503d 509 Gene3D G3DSA:2.30.38.10 332 403 1.9E-25 T 23-04-2016 RPE_RS11915 a87f71a5c3c0b3e5043805aa2dc1503d 509 Pfam PF13193 AMP-binding enzyme C-terminal domain 422 497 5.4E-19 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RPE_RS11915 a87f71a5c3c0b3e5043805aa2dc1503d 509 Gene3D G3DSA:3.40.50.980 164 318 6.7E-30 T 23-04-2016 RPE_RS11915 a87f71a5c3c0b3e5043805aa2dc1503d 509 Pfam PF00501 AMP-binding enzyme 10 413 1.9E-85 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS11915 a87f71a5c3c0b3e5043805aa2dc1503d 509 Gene3D G3DSA:3.40.50.980 3 163 6.4E-35 T 23-04-2016 RPE_RS07365 21f527f6bd021a8699c85c6e3ed47afb 269 Pfam PF08543 Phosphomethylpyrimidine kinase 13 260 2.1E-96 T 23-04-2016 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase UniPathway: UPA00647 RPE_RS07365 21f527f6bd021a8699c85c6e3ed47afb 269 PANTHER PTHR20858 1 266 1.2E-119 T 23-04-2016 RPE_RS07365 21f527f6bd021a8699c85c6e3ed47afb 269 SUPERFAMILY SSF53613 1 263 6.7E-81 T 23-04-2016 IPR029056 Ribokinase-like RPE_RS07365 21f527f6bd021a8699c85c6e3ed47afb 269 PANTHER PTHR20858:SF17 1 266 1.2E-119 T 23-04-2016 RPE_RS07365 21f527f6bd021a8699c85c6e3ed47afb 269 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 6 262 7.7E-100 T 23-04-2016 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RPE_RS07365 21f527f6bd021a8699c85c6e3ed47afb 269 Gene3D G3DSA:3.40.1190.20 4 263 1.5E-103 T 23-04-2016 IPR029056 Ribokinase-like RPE_RS07875 f5f6ac7cedee2861fe39f92ce5926ae2 343 PANTHER PTHR33055:SF2 3 342 7.9E-129 T 23-04-2016 RPE_RS07875 f5f6ac7cedee2861fe39f92ce5926ae2 343 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 289 1.1E-20 T 23-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 RPE_RS07875 f5f6ac7cedee2861fe39f92ce5926ae2 343 PANTHER PTHR33055 3 342 7.9E-129 T 23-04-2016 RPE_RS07875 f5f6ac7cedee2861fe39f92ce5926ae2 343 Pfam PF01548 Transposase 7 147 1.1E-9 T 23-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 RPE_RS16375 2eaf1d3c5237dcee93e33de64d943251 344 Gene3D G3DSA:3.90.180.10 2 139 4.7E-54 T 23-04-2016 IPR011032 GroES-like RPE_RS16375 2eaf1d3c5237dcee93e33de64d943251 344 Pfam PF16884 N-terminal domain of oxidoreductase 7 113 4.6E-39 T 23-04-2016 RPE_RS16375 2eaf1d3c5237dcee93e33de64d943251 344 SMART SM00829 18 337 1.1E-5 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RPE_RS16375 2eaf1d3c5237dcee93e33de64d943251 344 SUPERFAMILY SSF51735 124 305 2.63E-46 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS16375 2eaf1d3c5237dcee93e33de64d943251 344 Gene3D G3DSA:3.40.50.720 140 307 7.0E-66 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS16375 2eaf1d3c5237dcee93e33de64d943251 344 PANTHER PTHR11695:SF557 23 344 3.4E-185 T 23-04-2016 RPE_RS16375 2eaf1d3c5237dcee93e33de64d943251 344 SUPERFAMILY SSF50129 6 143 4.3E-41 T 23-04-2016 IPR011032 GroES-like RPE_RS16375 2eaf1d3c5237dcee93e33de64d943251 344 Pfam PF00107 Zinc-binding dehydrogenase 158 285 4.8E-18 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RPE_RS16375 2eaf1d3c5237dcee93e33de64d943251 344 PANTHER PTHR11695 23 344 3.4E-185 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RPE_RS08435 177dbfd73ad290a89e4baa7340d3b99e 377 SUPERFAMILY SSF53448 19 232 1.31E-35 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS08435 177dbfd73ad290a89e4baa7340d3b99e 377 PANTHER PTHR10859 2 308 4.8E-69 T 23-04-2016 RPE_RS08435 177dbfd73ad290a89e4baa7340d3b99e 377 PANTHER PTHR10859:SF37 2 308 4.8E-69 T 23-04-2016 RPE_RS08435 177dbfd73ad290a89e4baa7340d3b99e 377 Pfam PF04138 GtrA-like protein 258 374 1.4E-18 T 23-04-2016 IPR007267 GtrA-like protein GO:0000271|GO:0006810|GO:0016021 RPE_RS08435 177dbfd73ad290a89e4baa7340d3b99e 377 Gene3D G3DSA:3.90.550.10 21 189 3.4E-24 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS08435 177dbfd73ad290a89e4baa7340d3b99e 377 Pfam PF00535 Glycosyl transferase family 2 22 187 1.0E-30 T 23-04-2016 IPR001173 Glycosyltransferase 2-like RPE_RS22935 c413a286b8f929e8bd9bc03af7255926 272 PANTHER PTHR24322 162 194 4.2E-60 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22935 c413a286b8f929e8bd9bc03af7255926 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 2.6E-9 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22935 c413a286b8f929e8bd9bc03af7255926 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 2.6E-9 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22935 c413a286b8f929e8bd9bc03af7255926 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 2.6E-9 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22935 c413a286b8f929e8bd9bc03af7255926 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 2.6E-9 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22935 c413a286b8f929e8bd9bc03af7255926 272 SUPERFAMILY SSF51735 9 258 6.15E-67 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS22935 c413a286b8f929e8bd9bc03af7255926 272 PANTHER PTHR24322 15 146 4.2E-60 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22935 c413a286b8f929e8bd9bc03af7255926 272 PIRSF PIRSF000094 5 262 3.2E-114 T 23-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RPE_RS22935 c413a286b8f929e8bd9bc03af7255926 272 PANTHER PTHR24322:SF317 162 194 4.2E-60 T 23-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RPE_RS22935 c413a286b8f929e8bd9bc03af7255926 272 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 255 6.4E-89 T 23-04-2016 RPE_RS22935 c413a286b8f929e8bd9bc03af7255926 272 PANTHER PTHR24322:SF317 15 146 4.2E-60 T 23-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RPE_RS22935 c413a286b8f929e8bd9bc03af7255926 272 Gene3D G3DSA:3.40.50.720 10 204 1.9E-67 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS08795 a857638b2dbc725f15247e2861a177c3 176 PANTHER PTHR30173:SF6 7 153 3.5E-47 T 23-04-2016 RPE_RS08795 a857638b2dbc725f15247e2861a177c3 176 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 9 152 9.4E-25 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS08795 a857638b2dbc725f15247e2861a177c3 176 SUPERFAMILY SSF88946 9 78 3.65E-20 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS08795 a857638b2dbc725f15247e2861a177c3 176 Pfam PF08281 Sigma-70, region 4 97 149 4.2E-16 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS08795 a857638b2dbc725f15247e2861a177c3 176 Pfam PF04542 Sigma-70 region 2 9 71 4.9E-16 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS08795 a857638b2dbc725f15247e2861a177c3 176 Gene3D G3DSA:1.10.1740.10 7 72 9.0E-22 T 23-04-2016 RPE_RS08795 a857638b2dbc725f15247e2861a177c3 176 Gene3D G3DSA:1.10.10.10 93 153 4.9E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS08795 a857638b2dbc725f15247e2861a177c3 176 SUPERFAMILY SSF88659 93 153 1.88E-14 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS08795 a857638b2dbc725f15247e2861a177c3 176 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 26 57 - T 23-04-2016 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS08795 a857638b2dbc725f15247e2861a177c3 176 PANTHER PTHR30173 7 153 3.5E-47 T 23-04-2016 RPE_RS22815 a7efb0cbf07fe032ae7cb14d694f19d5 681 Pfam PF00672 HAMP domain 311 374 1.4E-10 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS22815 a7efb0cbf07fe032ae7cb14d694f19d5 681 SUPERFAMILY SSF58104 427 674 9.02E-62 T 23-04-2016 RPE_RS22815 a7efb0cbf07fe032ae7cb14d694f19d5 681 SUPERFAMILY SSF58104 358 385 9.02E-62 T 23-04-2016 RPE_RS22815 a7efb0cbf07fe032ae7cb14d694f19d5 681 SMART SM00304 330 383 2.7E-7 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS22815 a7efb0cbf07fe032ae7cb14d694f19d5 681 PANTHER PTHR32089:SF40 399 678 3.6E-157 T 23-04-2016 RPE_RS22815 a7efb0cbf07fe032ae7cb14d694f19d5 681 PANTHER PTHR32089:SF40 296 365 3.6E-157 T 23-04-2016 RPE_RS22815 a7efb0cbf07fe032ae7cb14d694f19d5 681 PANTHER PTHR32089 399 678 3.6E-157 T 23-04-2016 RPE_RS22815 a7efb0cbf07fe032ae7cb14d694f19d5 681 PANTHER PTHR32089 296 365 3.6E-157 T 23-04-2016 RPE_RS22815 a7efb0cbf07fe032ae7cb14d694f19d5 681 SMART SM00283 421 675 1.3E-47 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS22815 a7efb0cbf07fe032ae7cb14d694f19d5 681 Gene3D G3DSA:1.10.287.950 439 644 8.3E-46 T 23-04-2016 RPE_RS22815 a7efb0cbf07fe032ae7cb14d694f19d5 681 SMART SM01358 51 301 6.2E-41 T 23-04-2016 IPR032255 Helical bimodular sensor domain RPE_RS22815 a7efb0cbf07fe032ae7cb14d694f19d5 681 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 497 674 8.9E-35 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS01595 03d07a3477847df748cb7b619873966d 316 SMART SM00382 109 292 1.6E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS01595 03d07a3477847df748cb7b619873966d 316 SMART SM00962 110 311 2.7E-113 T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RPE_RS01595 03d07a3477847df748cb7b619873966d 316 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 284 297 - T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RPE_RS01595 03d07a3477847df748cb7b619873966d 316 Gene3D G3DSA:3.40.50.300 122 311 6.0E-78 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01595 03d07a3477847df748cb7b619873966d 316 Pfam PF00448 SRP54-type protein, GTPase domain 110 309 1.1E-73 T 23-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RPE_RS01595 03d07a3477847df748cb7b619873966d 316 Gene3D G3DSA:1.20.120.140 41 121 3.0E-21 T 23-04-2016 RPE_RS01595 03d07a3477847df748cb7b619873966d 316 PANTHER PTHR11564:SF16 6 309 2.2E-120 T 23-04-2016 RPE_RS01595 03d07a3477847df748cb7b619873966d 316 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 40 309 3.3E-98 T 23-04-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 RPE_RS01595 03d07a3477847df748cb7b619873966d 316 SUPERFAMILY SSF47364 11 87 1.83E-15 T 23-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 RPE_RS01595 03d07a3477847df748cb7b619873966d 316 SMART SM00963 16 95 3.5E-9 T 23-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 RPE_RS01595 03d07a3477847df748cb7b619873966d 316 SUPERFAMILY SSF52540 108 310 2.77E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01595 03d07a3477847df748cb7b619873966d 316 PANTHER PTHR11564 6 309 2.2E-120 T 23-04-2016 RPE_RS01595 03d07a3477847df748cb7b619873966d 316 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 39 311 57.823 T 23-04-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 RPE_RS01595 03d07a3477847df748cb7b619873966d 316 Pfam PF02881 SRP54-type protein, helical bundle domain 25 90 1.1E-6 T 23-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 RPE_RS20705 f15b328fc02a0cfb818a1be438af403b 134 SUPERFAMILY SSF47413 57 121 1.71E-9 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS20705 f15b328fc02a0cfb818a1be438af403b 134 Gene3D G3DSA:1.10.260.40 73 127 2.2E-9 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS20705 f15b328fc02a0cfb818a1be438af403b 134 PANTHER PTHR36511:SF3 72 131 1.4E-15 T 23-04-2016 RPE_RS20705 f15b328fc02a0cfb818a1be438af403b 134 TIGRFAM TIGR03831 YgiT_finger: YgiT-type zinc finger domain 5 49 1.6E-7 T 23-04-2016 IPR022453 Zinc finger, MqsA-type RPE_RS20705 f15b328fc02a0cfb818a1be438af403b 134 TIGRFAM TIGR03830 CxxCG_CxxCG_HTH: putative zinc finger/helix-turn-helix protein, YgiT family 7 130 6.0E-42 T 23-04-2016 IPR022452 Antitoxin MqsA RPE_RS20705 f15b328fc02a0cfb818a1be438af403b 134 SMART SM00530 73 127 3.8E-4 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RPE_RS20705 f15b328fc02a0cfb818a1be438af403b 134 PANTHER PTHR36511 72 131 1.4E-15 T 23-04-2016 RPE_RS20705 f15b328fc02a0cfb818a1be438af403b 134 Pfam PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA 5 130 3.2E-31 T 23-04-2016 IPR032758 Antitoxin MqsA/igA-2 RPE_RS08015 a4183528a7ee0f4b439613e6645cd5e9 362 SMART SM00382 69 240 6.7E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS08015 a4183528a7ee0f4b439613e6645cd5e9 362 ProSitePatterns PS00321 recA signature. 225 233 - T 23-04-2016 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 RPE_RS08015 a4183528a7ee0f4b439613e6645cd5e9 362 Hamap MF_00268 Protein RecA [recA]. 16 341 51.713 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RPE_RS08015 a4183528a7ee0f4b439613e6645cd5e9 362 PANTHER PTHR22942:SF1 16 347 2.8E-204 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RPE_RS08015 a4183528a7ee0f4b439613e6645cd5e9 362 PANTHER PTHR22942 16 347 2.8E-204 T 23-04-2016 RPE_RS08015 a4183528a7ee0f4b439613e6645cd5e9 362 Pfam PF00154 recA bacterial DNA recombination protein 18 280 4.0E-148 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RPE_RS08015 a4183528a7ee0f4b439613e6645cd5e9 362 SUPERFAMILY SSF52540 18 279 4.0E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS08015 a4183528a7ee0f4b439613e6645cd5e9 362 PRINTS PR00142 RecA protein signature 309 326 1.3E-84 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RPE_RS08015 a4183528a7ee0f4b439613e6645cd5e9 362 PRINTS PR00142 RecA protein signature 105 134 1.3E-84 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RPE_RS08015 a4183528a7ee0f4b439613e6645cd5e9 362 PRINTS PR00142 RecA protein signature 139 168 1.3E-84 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RPE_RS08015 a4183528a7ee0f4b439613e6645cd5e9 362 PRINTS PR00142 RecA protein signature 255 284 1.3E-84 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RPE_RS08015 a4183528a7ee0f4b439613e6645cd5e9 362 PRINTS PR00142 RecA protein signature 177 206 1.3E-84 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RPE_RS08015 a4183528a7ee0f4b439613e6645cd5e9 362 PRINTS PR00142 RecA protein signature 222 250 1.3E-84 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RPE_RS08015 a4183528a7ee0f4b439613e6645cd5e9 362 Gene3D G3DSA:3.40.50.300 43 279 1.2E-83 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS08015 a4183528a7ee0f4b439613e6645cd5e9 362 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 15 336 5.7E-174 T 23-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RPE_RS08015 a4183528a7ee0f4b439613e6645cd5e9 362 Gene3D G3DSA:3.30.250.10 280 337 1.9E-26 T 23-04-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal RPE_RS08015 a4183528a7ee0f4b439613e6645cd5e9 362 SUPERFAMILY SSF54752 280 337 6.15E-21 T 23-04-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal RPE_RS15475 f3166c7895b3e6d728c7cef57f101993 125 Pfam PF01022 Bacterial regulatory protein, arsR family 43 87 2.6E-12 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RPE_RS15475 f3166c7895b3e6d728c7cef57f101993 125 Gene3D G3DSA:1.10.10.10 23 117 5.2E-36 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS15475 f3166c7895b3e6d728c7cef57f101993 125 SMART SM00418 35 113 6.0E-27 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RPE_RS15475 f3166c7895b3e6d728c7cef57f101993 125 PANTHER PTHR33154 1 125 2.6E-33 T 23-04-2016 RPE_RS15475 f3166c7895b3e6d728c7cef57f101993 125 PANTHER PTHR33154:SF10 1 125 2.6E-33 T 23-04-2016 RPE_RS15475 f3166c7895b3e6d728c7cef57f101993 125 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 37 52 1.74E-12 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RPE_RS15475 f3166c7895b3e6d728c7cef57f101993 125 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 84 99 1.74E-12 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RPE_RS15475 f3166c7895b3e6d728c7cef57f101993 125 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 69 84 1.74E-12 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RPE_RS15475 f3166c7895b3e6d728c7cef57f101993 125 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 56 67 1.74E-12 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RPE_RS15475 f3166c7895b3e6d728c7cef57f101993 125 SUPERFAMILY SSF46785 31 116 1.63E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS03075 b1cc5322b710f5ee2be80050c72d6aa5 353 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 58 226 1.8E-10 T 23-04-2016 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0008152|GO:0016788 RPE_RS03075 b1cc5322b710f5ee2be80050c72d6aa5 353 SUPERFAMILY SSF53187 30 288 7.54E-45 T 23-04-2016 RPE_RS03075 b1cc5322b710f5ee2be80050c72d6aa5 353 Gene3D G3DSA:3.40.630.10 58 203 1.4E-8 T 23-04-2016 RPE_RS06345 81f2b8cea475f475278308293c2fc2d2 128 Pfam PF00581 Rhodanese-like domain 19 116 2.4E-13 T 23-04-2016 IPR001763 Rhodanese-like domain RPE_RS06345 81f2b8cea475f475278308293c2fc2d2 128 Gene3D G3DSA:3.40.250.10 4 128 3.9E-29 T 23-04-2016 IPR001763 Rhodanese-like domain RPE_RS06345 81f2b8cea475f475278308293c2fc2d2 128 SUPERFAMILY SSF52821 5 124 4.71E-27 T 23-04-2016 IPR001763 Rhodanese-like domain RPE_RS06345 81f2b8cea475f475278308293c2fc2d2 128 SMART SM00450 18 121 7.5E-18 T 23-04-2016 IPR001763 Rhodanese-like domain RPE_RS06115 184c62097ec42449e2ed4a11d5b8384e 175 SUPERFAMILY SSF50022 32 173 2.47E-38 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RPE_RS06115 184c62097ec42449e2ed4a11d5b8384e 175 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 10 175 1.3E-63 T 23-04-2016 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 RPE_RS06115 184c62097ec42449e2ed4a11d5b8384e 175 Pfam PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal 1 41 5.0E-19 T 23-04-2016 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 RPE_RS06115 184c62097ec42449e2ed4a11d5b8384e 175 Gene3D G3DSA:1.20.5.510 5 41 1.4E-19 T 23-04-2016 RPE_RS06115 184c62097ec42449e2ed4a11d5b8384e 175 PRINTS PR00162 Rieske 2Fe-2S subunit signature 147 159 1.8E-15 T 23-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RPE_RS06115 184c62097ec42449e2ed4a11d5b8384e 175 PRINTS PR00162 Rieske 2Fe-2S subunit signature 135 147 1.8E-15 T 23-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RPE_RS06115 184c62097ec42449e2ed4a11d5b8384e 175 PRINTS PR00162 Rieske 2Fe-2S subunit signature 113 124 1.8E-15 T 23-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RPE_RS06115 184c62097ec42449e2ed4a11d5b8384e 175 PANTHER PTHR10134 8 175 5.2E-66 T 23-04-2016 IPR014349 Rieske iron-sulphur protein GO:0016679|GO:0055114 RPE_RS06115 184c62097ec42449e2ed4a11d5b8384e 175 Pfam PF00355 Rieske [2Fe-2S] domain 108 161 2.6E-12 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RPE_RS06115 184c62097ec42449e2ed4a11d5b8384e 175 Gene3D G3DSA:2.102.10.10 49 173 6.1E-37 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RPE_RS02260 a2e5ad6fba31274187301332bd07f770 324 SUPERFAMILY SSF52096 46 156 4.26E-36 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS02260 a2e5ad6fba31274187301332bd07f770 324 SUPERFAMILY SSF52096 185 246 4.26E-36 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS02260 a2e5ad6fba31274187301332bd07f770 324 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 55 256 1.5E-58 T 23-04-2016 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 RPE_RS02260 a2e5ad6fba31274187301332bd07f770 324 Pfam PF01343 Peptidase family S49 109 260 3.3E-40 T 23-04-2016 IPR002142 Peptidase S49 GO:0006508|GO:0008233 RPE_RS02260 a2e5ad6fba31274187301332bd07f770 324 Gene3D G3DSA:3.90.226.10 186 262 1.2E-38 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS02260 a2e5ad6fba31274187301332bd07f770 324 Gene3D G3DSA:3.90.226.10 38 148 1.2E-38 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS02260 a2e5ad6fba31274187301332bd07f770 324 PANTHER PTHR33209 1 21 2.4E-64 T 23-04-2016 RPE_RS02260 a2e5ad6fba31274187301332bd07f770 324 PANTHER PTHR33209 51 281 2.4E-64 T 23-04-2016 RPE_RS23410 a720895dbf8c8ed3a0c04247ff6a64ce 322 Gene3D G3DSA:2.130.10.10 21 321 2.6E-74 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RPE_RS23410 a720895dbf8c8ed3a0c04247ff6a64ce 322 Pfam PF10282 Lactonase, 7-bladed beta-propeller 23 123 2.8E-7 T 23-04-2016 IPR019405 Lactonase, 7-bladed beta propeller KEGG: 00030+3.1.1.31|UniPathway: UPA00115 RPE_RS23410 a720895dbf8c8ed3a0c04247ff6a64ce 322 TIGRFAM TIGR03866 PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein 13 321 1.1E-156 T 23-04-2016 IPR022456 PQQ-dependent catabolism-associated beta-propeller protein RPE_RS23410 a720895dbf8c8ed3a0c04247ff6a64ce 322 PANTHER PTHR13833 23 184 6.8E-37 T 23-04-2016 RPE_RS23410 a720895dbf8c8ed3a0c04247ff6a64ce 322 PANTHER PTHR13833 277 317 6.8E-37 T 23-04-2016 RPE_RS23410 a720895dbf8c8ed3a0c04247ff6a64ce 322 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 25 59 7.9E-15 T 23-04-2016 IPR011964 YVTN beta-propeller repeat RPE_RS23410 a720895dbf8c8ed3a0c04247ff6a64ce 322 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 105 143 2.4E-8 T 23-04-2016 IPR011964 YVTN beta-propeller repeat RPE_RS23410 a720895dbf8c8ed3a0c04247ff6a64ce 322 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 279 318 2.0E-16 T 23-04-2016 IPR011964 YVTN beta-propeller repeat RPE_RS23410 a720895dbf8c8ed3a0c04247ff6a64ce 322 SUPERFAMILY SSF50974 6 320 3.14E-77 T 23-04-2016 IPR011045 Nitrous oxide reductase, N-terminal RPE_RS02810 a387cd360e542652e5f6182f112473b4 963 SUPERFAMILY SSF52540 401 453 1.08E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02810 a387cd360e542652e5f6182f112473b4 963 SUPERFAMILY SSF52540 155 214 1.08E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02810 a387cd360e542652e5f6182f112473b4 963 SUPERFAMILY SSF52540 482 600 1.08E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02810 a387cd360e542652e5f6182f112473b4 963 SMART SM00487 33 222 1.3E-26 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RPE_RS02810 a387cd360e542652e5f6182f112473b4 963 SUPERFAMILY SSF52540 31 248 9.92E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02810 a387cd360e542652e5f6182f112473b4 963 Pfam PF00271 Helicase conserved C-terminal domain 448 555 6.7E-17 T 23-04-2016 IPR001650 Helicase, C-terminal RPE_RS02810 a387cd360e542652e5f6182f112473b4 963 SMART SM00490 474 555 7.1E-23 T 23-04-2016 IPR001650 Helicase, C-terminal RPE_RS02810 a387cd360e542652e5f6182f112473b4 963 PANTHER PTHR10799:SF688 382 452 1.9E-67 T 23-04-2016 RPE_RS02810 a387cd360e542652e5f6182f112473b4 963 PANTHER PTHR10799:SF688 15 305 1.9E-67 T 23-04-2016 RPE_RS02810 a387cd360e542652e5f6182f112473b4 963 PANTHER PTHR10799:SF688 481 676 1.9E-67 T 23-04-2016 RPE_RS02810 a387cd360e542652e5f6182f112473b4 963 Pfam PF00176 SNF2 family N-terminal domain 54 278 8.8E-37 T 23-04-2016 IPR000330 SNF2-related, N-terminal domain GO:0005524 RPE_RS02810 a387cd360e542652e5f6182f112473b4 963 Gene3D G3DSA:3.40.50.300 421 587 1.7E-28 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02810 a387cd360e542652e5f6182f112473b4 963 PANTHER PTHR10799 382 452 1.9E-67 T 23-04-2016 RPE_RS02810 a387cd360e542652e5f6182f112473b4 963 PANTHER PTHR10799 15 305 1.9E-67 T 23-04-2016 RPE_RS02810 a387cd360e542652e5f6182f112473b4 963 PANTHER PTHR10799 481 676 1.9E-67 T 23-04-2016 RPE_RS02810 a387cd360e542652e5f6182f112473b4 963 Gene3D G3DSA:3.40.50.300 35 210 2.3E-25 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS07660 fb02532520c30fffb5ab0a7267314e20 718 SMART SM00028 55 88 91.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS07660 fb02532520c30fffb5ab0a7267314e20 718 SMART SM00028 157 190 3.0E-6 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS07660 fb02532520c30fffb5ab0a7267314e20 718 SMART SM00028 89 122 0.0065 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS07660 fb02532520c30fffb5ab0a7267314e20 718 SMART SM00028 259 292 0.059 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS07660 fb02532520c30fffb5ab0a7267314e20 718 SMART SM00028 21 54 0.0072 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS07660 fb02532520c30fffb5ab0a7267314e20 718 SMART SM00028 123 156 0.0022 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS07660 fb02532520c30fffb5ab0a7267314e20 718 SMART SM00028 225 258 57.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS07660 fb02532520c30fffb5ab0a7267314e20 718 SMART SM00028 191 224 1.2 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS07660 fb02532520c30fffb5ab0a7267314e20 718 Pfam PF13432 Tetratricopeptide repeat 33 87 0.0096 T 23-04-2016 RPE_RS07660 fb02532520c30fffb5ab0a7267314e20 718 Pfam PF13432 Tetratricopeptide repeat 232 292 0.01 T 23-04-2016 RPE_RS07660 fb02532520c30fffb5ab0a7267314e20 718 Pfam PF13432 Tetratricopeptide repeat 101 156 4.3E-5 T 23-04-2016 RPE_RS07660 fb02532520c30fffb5ab0a7267314e20 718 Pfam PF13432 Tetratricopeptide repeat 162 218 3.4E-8 T 23-04-2016 RPE_RS07660 fb02532520c30fffb5ab0a7267314e20 718 SUPERFAMILY SSF53756 370 620 4.58E-7 T 23-04-2016 RPE_RS07660 fb02532520c30fffb5ab0a7267314e20 718 Pfam PF13844 Glycosyl transferase family 41 514 695 4.6E-14 T 23-04-2016 IPR029489 O-GlcNAc transferase, C-terminal UniPathway: UPA00378 RPE_RS07660 fb02532520c30fffb5ab0a7267314e20 718 Pfam PF13844 Glycosyl transferase family 41 347 486 4.3E-23 T 23-04-2016 IPR029489 O-GlcNAc transferase, C-terminal UniPathway: UPA00378 RPE_RS07660 fb02532520c30fffb5ab0a7267314e20 718 PANTHER PTHR23083 32 292 2.0E-58 T 23-04-2016 RPE_RS07660 fb02532520c30fffb5ab0a7267314e20 718 SUPERFAMILY SSF48452 95 301 1.18E-45 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS07660 fb02532520c30fffb5ab0a7267314e20 718 Gene3D G3DSA:1.25.40.10 108 326 4.1E-50 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS07660 fb02532520c30fffb5ab0a7267314e20 718 Gene3D G3DSA:1.25.40.10 507 537 4.1E-50 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS07660 fb02532520c30fffb5ab0a7267314e20 718 Gene3D G3DSA:1.25.40.10 23 107 6.9E-19 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS07660 fb02532520c30fffb5ab0a7267314e20 718 SUPERFAMILY SSF48452 26 130 3.74E-18 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS16080 9dc2dc10d63b06b09bdd2b516d33129a 351 PANTHER PTHR11795:SF402 1 57 5.5E-125 T 23-04-2016 RPE_RS16080 9dc2dc10d63b06b09bdd2b516d33129a 351 PANTHER PTHR11795:SF402 115 349 5.5E-125 T 23-04-2016 RPE_RS16080 9dc2dc10d63b06b09bdd2b516d33129a 351 Pfam PF02653 Branched-chain amino acid transport system / permease component 123 327 5.9E-13 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RPE_RS16080 9dc2dc10d63b06b09bdd2b516d33129a 351 PANTHER PTHR11795 1 57 5.5E-125 T 23-04-2016 RPE_RS16080 9dc2dc10d63b06b09bdd2b516d33129a 351 PANTHER PTHR11795 115 349 5.5E-125 T 23-04-2016 RPE_RS11530 4a5083d04cb6d6797249467ab4528864 472 SUPERFAMILY SSF56059 14 209 2.05E-67 T 23-04-2016 RPE_RS11530 4a5083d04cb6d6797249467ab4528864 472 SUPERFAMILY SSF56059 317 463 2.05E-67 T 23-04-2016 RPE_RS11530 4a5083d04cb6d6797249467ab4528864 472 Pfam PF14403 Circularly permuted ATP-grasp type 2 71 448 3.3E-163 T 23-04-2016 IPR025841 Circularly permuted ATP-grasp type 2 RPE_RS11530 4a5083d04cb6d6797249467ab4528864 472 PANTHER PTHR34595 1 472 0.0 T 23-04-2016 RPE_RS11530 4a5083d04cb6d6797249467ab4528864 472 PIRSF PIRSF005522 1 472 3.1E-230 T 23-04-2016 IPR016450 Uncharacterised conserved protein UCP005522 RPE_RS11530 4a5083d04cb6d6797249467ab4528864 472 PANTHER PTHR34595:SF3 1 472 0.0 T 23-04-2016 RPE_RS11165 27d52675bba9e034bac79c7d2864d717 209 Gene3D G3DSA:3.40.50.10230 4 205 8.2E-81 T 23-04-2016 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 RPE_RS11165 27d52675bba9e034bac79c7d2864d717 209 PANTHER PTHR32439 5 204 2.0E-69 T 23-04-2016 RPE_RS11165 27d52675bba9e034bac79c7d2864d717 209 Pfam PF02570 Precorrin-8X methylmutase 12 206 7.1E-74 T 23-04-2016 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 RPE_RS11165 27d52675bba9e034bac79c7d2864d717 209 SUPERFAMILY SSF63965 4 206 9.29E-74 T 23-04-2016 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 RPE_RS18655 1474c3b916d39f036ba0c235f67706ad 211 SUPERFAMILY SSF53448 12 201 1.4E-33 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS18655 1474c3b916d39f036ba0c235f67706ad 211 Pfam PF12804 MobA-like NTP transferase domain 14 171 7.4E-34 T 23-04-2016 IPR025877 MobA-like NTP transferase RPE_RS18655 1474c3b916d39f036ba0c235f67706ad 211 Gene3D G3DSA:3.90.550.10 13 209 1.0E-50 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS18655 1474c3b916d39f036ba0c235f67706ad 211 PANTHER PTHR19136 14 205 9.4E-44 T 23-04-2016 RPE_RS18655 1474c3b916d39f036ba0c235f67706ad 211 PANTHER PTHR19136:SF81 14 205 9.4E-44 T 23-04-2016 RPE_RS18655 1474c3b916d39f036ba0c235f67706ad 211 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 10 204 27.205 T 23-04-2016 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 MetaCyc: PWY-5964|MetaCyc: PWY-7639 RPE_RS18655 1474c3b916d39f036ba0c235f67706ad 211 TIGRFAM TIGR02665 molyb_mobA: molybdenum cofactor guanylyltransferase 13 202 1.7E-62 T 23-04-2016 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 MetaCyc: PWY-5964|MetaCyc: PWY-7639 RPE_RS24725 b12bfdb7a817f24ca40c89d623c6f30e 226 Pfam PF01478 Type IV leader peptidase family 59 183 9.8E-9 T 23-04-2016 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 RPE_RS15670 1df26ac7f6d6cb328346796ba59d2df1 525 PANTHER PTHR21343:SF1 9 524 4.0E-181 T 23-04-2016 RPE_RS15670 1df26ac7f6d6cb328346796ba59d2df1 525 Gene3D G3DSA:3.40.50.300 27 267 5.6E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15670 1df26ac7f6d6cb328346796ba59d2df1 525 SUPERFAMILY SSF52540 28 273 1.15E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15670 1df26ac7f6d6cb328346796ba59d2df1 525 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 525 184.58 T 23-04-2016 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 UniPathway: UPA00148 RPE_RS15670 1df26ac7f6d6cb328346796ba59d2df1 525 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 29 519 2.4E-122 T 23-04-2016 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 UniPathway: UPA00148 RPE_RS15670 1df26ac7f6d6cb328346796ba59d2df1 525 Gene3D G3DSA:3.40.50.880 288 485 3.6E-24 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RPE_RS15670 1df26ac7f6d6cb328346796ba59d2df1 525 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 289 478 8.4E-51 T 23-04-2016 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 UniPathway: UPA00148 RPE_RS15670 1df26ac7f6d6cb328346796ba59d2df1 525 SUPERFAMILY SSF52317 289 485 2.06E-32 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RPE_RS15670 1df26ac7f6d6cb328346796ba59d2df1 525 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 29 267 4.4E-22 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain RPE_RS15670 1df26ac7f6d6cb328346796ba59d2df1 525 PANTHER PTHR21343 9 524 4.0E-181 T 23-04-2016 RPE_RS13755 eaf799c0eb1b5b124cbea603235c552f 1034 PRINTS PR00702 Acriflavin resistance protein family signature 39 57 1.8E-66 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS13755 eaf799c0eb1b5b124cbea603235c552f 1034 PRINTS PR00702 Acriflavin resistance protein family signature 544 561 1.8E-66 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS13755 eaf799c0eb1b5b124cbea603235c552f 1034 PRINTS PR00702 Acriflavin resistance protein family signature 613 627 1.8E-66 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS13755 eaf799c0eb1b5b124cbea603235c552f 1034 PRINTS PR00702 Acriflavin resistance protein family signature 439 462 1.8E-66 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS13755 eaf799c0eb1b5b124cbea603235c552f 1034 PRINTS PR00702 Acriflavin resistance protein family signature 331 354 1.8E-66 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS13755 eaf799c0eb1b5b124cbea603235c552f 1034 PRINTS PR00702 Acriflavin resistance protein family signature 11 35 1.8E-66 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS13755 eaf799c0eb1b5b124cbea603235c552f 1034 PRINTS PR00702 Acriflavin resistance protein family signature 464 487 1.8E-66 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS13755 eaf799c0eb1b5b124cbea603235c552f 1034 PRINTS PR00702 Acriflavin resistance protein family signature 358 379 1.8E-66 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS13755 eaf799c0eb1b5b124cbea603235c552f 1034 PRINTS PR00702 Acriflavin resistance protein family signature 386 410 1.8E-66 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS13755 eaf799c0eb1b5b124cbea603235c552f 1034 Gene3D G3DSA:3.30.70.1430 560 656 5.8E-12 T 23-04-2016 RPE_RS13755 eaf799c0eb1b5b124cbea603235c552f 1034 SUPERFAMILY SSF82693 138 183 8.63E-26 T 23-04-2016 RPE_RS13755 eaf799c0eb1b5b124cbea603235c552f 1034 SUPERFAMILY SSF82693 269 325 8.63E-26 T 23-04-2016 RPE_RS13755 eaf799c0eb1b5b124cbea603235c552f 1034 SUPERFAMILY SSF82866 291 490 5.75E-48 T 23-04-2016 RPE_RS13755 eaf799c0eb1b5b124cbea603235c552f 1034 Gene3D G3DSA:1.10.3850.10 803 1019 2.3E-52 T 23-04-2016 RPE_RS13755 eaf799c0eb1b5b124cbea603235c552f 1034 Gene3D G3DSA:1.10.3850.10 276 492 1.4E-59 T 23-04-2016 RPE_RS13755 eaf799c0eb1b5b124cbea603235c552f 1034 SUPERFAMILY SSF82693 41 125 2.62E-20 T 23-04-2016 RPE_RS13755 eaf799c0eb1b5b124cbea603235c552f 1034 Gene3D G3DSA:3.30.2090.10 182 267 2.4E-13 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS13755 eaf799c0eb1b5b124cbea603235c552f 1034 PANTHER PTHR32063 2 1027 0.0 T 23-04-2016 RPE_RS13755 eaf799c0eb1b5b124cbea603235c552f 1034 SUPERFAMILY SSF82714 712 795 5.36E-19 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS13755 eaf799c0eb1b5b124cbea603235c552f 1034 Gene3D G3DSA:3.30.70.1430 41 142 8.6E-24 T 23-04-2016 RPE_RS13755 eaf799c0eb1b5b124cbea603235c552f 1034 SUPERFAMILY SSF82866 802 1021 1.83E-43 T 23-04-2016 RPE_RS13755 eaf799c0eb1b5b124cbea603235c552f 1034 Gene3D G3DSA:3.30.2090.10 712 794 5.3E-20 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS13755 eaf799c0eb1b5b124cbea603235c552f 1034 PANTHER PTHR32063:SF21 2 1027 0.0 T 23-04-2016 RPE_RS13755 eaf799c0eb1b5b124cbea603235c552f 1034 SUPERFAMILY SSF82714 184 265 2.75E-13 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS13755 eaf799c0eb1b5b124cbea603235c552f 1034 SUPERFAMILY SSF82693 557 661 5.23E-15 T 23-04-2016 RPE_RS13755 eaf799c0eb1b5b124cbea603235c552f 1034 Pfam PF00873 AcrB/AcrD/AcrF family 7 1017 2.7E-301 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS08235 542b8056d5f6f634ece54d49a64f9a22 278 SUPERFAMILY SSF53681 7 106 2.42E-30 T 23-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RPE_RS08235 542b8056d5f6f634ece54d49a64f9a22 278 Gene3D G3DSA:3.40.50.1860 6 172 1.0E-43 T 23-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RPE_RS08235 542b8056d5f6f634ece54d49a64f9a22 278 SUPERFAMILY SSF53681 110 263 9.59E-29 T 23-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RPE_RS08235 542b8056d5f6f634ece54d49a64f9a22 278 PANTHER PTHR21198:SF2 1 269 1.3E-88 T 23-04-2016 RPE_RS08235 542b8056d5f6f634ece54d49a64f9a22 278 TIGRFAM TIGR00067 glut_race: glutamate racemase 7 233 7.6E-55 T 23-04-2016 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RPE_RS08235 542b8056d5f6f634ece54d49a64f9a22 278 Hamap MF_00258 Glutamate racemase [murI]. 5 261 30.829 T 23-04-2016 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RPE_RS08235 542b8056d5f6f634ece54d49a64f9a22 278 PANTHER PTHR21198 1 269 1.3E-88 T 23-04-2016 RPE_RS08235 542b8056d5f6f634ece54d49a64f9a22 278 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 187 197 - T 23-04-2016 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RPE_RS08235 542b8056d5f6f634ece54d49a64f9a22 278 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 72 80 - T 23-04-2016 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RPE_RS08235 542b8056d5f6f634ece54d49a64f9a22 278 Pfam PF01177 Asp/Glu/Hydantoin racemase 7 221 9.1E-24 T 23-04-2016 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RPE_RS03235 0c605cab895f2f410dc2c34f950f8810 298 PIRSF PIRSF000728 14 298 1.5E-109 T 23-04-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RPE_RS03235 0c605cab895f2f410dc2c34f950f8810 298 Gene3D G3DSA:3.40.1160.10 28 297 2.9E-104 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RPE_RS03235 0c605cab895f2f410dc2c34f950f8810 298 Pfam PF00696 Amino acid kinase family 30 275 7.2E-50 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RPE_RS03235 0c605cab895f2f410dc2c34f950f8810 298 TIGRFAM TIGR00761 argB: acetylglutamate kinase 30 273 4.1E-78 T 23-04-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RPE_RS03235 0c605cab895f2f410dc2c34f950f8810 298 Hamap MF_00082_B Acetylglutamate kinase [argB]. 27 298 36.352 T 23-04-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RPE_RS03235 0c605cab895f2f410dc2c34f950f8810 298 PANTHER PTHR23342 4 298 1.1E-114 T 23-04-2016 RPE_RS03235 0c605cab895f2f410dc2c34f950f8810 298 SUPERFAMILY SSF53633 7 297 2.23E-92 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RPE_RS07355 c85be248c312b620e0114af9213c6a47 308 PANTHER PTHR35008:SF2 5 302 8.0E-131 T 23-04-2016 RPE_RS07355 c85be248c312b620e0114af9213c6a47 308 SUPERFAMILY SSF46626 174 297 1.44E-15 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS07355 c85be248c312b620e0114af9213c6a47 308 PANTHER PTHR35008 5 302 8.0E-131 T 23-04-2016 RPE_RS07355 c85be248c312b620e0114af9213c6a47 308 SUPERFAMILY SSF46626 28 165 1.62E-21 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS07355 c85be248c312b620e0114af9213c6a47 308 Pfam PF00034 Cytochrome c 42 144 9.3E-6 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS07355 c85be248c312b620e0114af9213c6a47 308 Pfam PF00034 Cytochrome c 200 293 2.6E-4 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS07355 c85be248c312b620e0114af9213c6a47 308 Gene3D G3DSA:1.10.760.10 39 144 1.1E-13 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS07355 c85be248c312b620e0114af9213c6a47 308 Gene3D G3DSA:1.10.760.10 187 293 3.1E-10 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS04125 cb01a26537c77eafac4e568ce0e3f518 245 PANTHER PTHR13343:SF4 2 240 1.5E-46 T 23-04-2016 RPE_RS04125 cb01a26537c77eafac4e568ce0e3f518 245 SUPERFAMILY SSF50475 9 242 1.57E-51 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RPE_RS04125 cb01a26537c77eafac4e568ce0e3f518 245 Gene3D G3DSA:2.30.110.10 4 152 1.7E-49 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RPE_RS04125 cb01a26537c77eafac4e568ce0e3f518 245 PANTHER PTHR13343 2 240 1.5E-46 T 23-04-2016 RPE_RS04125 cb01a26537c77eafac4e568ce0e3f518 245 Pfam PF10615 Protein of unknown function (DUF2470) 165 233 1.8E-10 T 23-04-2016 IPR019595 Domain of unknown function DUF2470 RPE_RS04125 cb01a26537c77eafac4e568ce0e3f518 245 Gene3D G3DSA:3.20.180.10 154 238 2.2E-32 T 23-04-2016 IPR019595 Domain of unknown function DUF2470 RPE_RS04125 cb01a26537c77eafac4e568ce0e3f518 245 Pfam PF13883 Pyridoxamine 5'-phosphate oxidase 8 144 7.9E-16 T 23-04-2016 RPE_RS17395 2c92e06f8e3c1001e2fd060df4d3b718 272 SUPERFAMILY SSF74653 173 266 2.16E-7 T 23-04-2016 RPE_RS17395 2c92e06f8e3c1001e2fd060df4d3b718 272 Gene3D G3DSA:3.30.1150.10 175 260 8.7E-8 T 23-04-2016 RPE_RS17395 2c92e06f8e3c1001e2fd060df4d3b718 272 Pfam PF07660 Secretin and TonB N terminus short domain 95 145 5.5E-9 T 23-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 RPE_RS17395 2c92e06f8e3c1001e2fd060df4d3b718 272 SMART SM00965 95 146 2.1E-10 T 23-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 RPE_RS04855 50d455b17ea17911e9863c75c0f5ddaf 535 Pfam PF08345 Flagellar M-ring protein C-terminal 246 405 4.5E-39 T 23-04-2016 IPR013556 Flagellar M-ring C-terminal RPE_RS04855 50d455b17ea17911e9863c75c0f5ddaf 535 Pfam PF01514 Secretory protein of YscJ/FliF family 23 211 1.4E-65 T 23-04-2016 IPR006182 Secretory protein YscJ/FliF RPE_RS04855 50d455b17ea17911e9863c75c0f5ddaf 535 PANTHER PTHR30046:SF0 1 535 7.3E-130 T 23-04-2016 RPE_RS04855 50d455b17ea17911e9863c75c0f5ddaf 535 PANTHER PTHR30046 1 535 7.3E-130 T 23-04-2016 RPE_RS04855 50d455b17ea17911e9863c75c0f5ddaf 535 PIRSF PIRSF004862 1 535 2.5E-131 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RPE_RS04855 50d455b17ea17911e9863c75c0f5ddaf 535 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 5 533 4.3E-92 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RPE_RS04855 50d455b17ea17911e9863c75c0f5ddaf 535 PRINTS PR01009 Flagellar M-ring protein signature 187 205 3.1E-33 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RPE_RS04855 50d455b17ea17911e9863c75c0f5ddaf 535 PRINTS PR01009 Flagellar M-ring protein signature 114 132 3.1E-33 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RPE_RS04855 50d455b17ea17911e9863c75c0f5ddaf 535 PRINTS PR01009 Flagellar M-ring protein signature 257 275 3.1E-33 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RPE_RS04855 50d455b17ea17911e9863c75c0f5ddaf 535 PRINTS PR01009 Flagellar M-ring protein signature 146 160 3.1E-33 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RPE_RS04855 50d455b17ea17911e9863c75c0f5ddaf 535 PRINTS PR01009 Flagellar M-ring protein signature 329 353 3.1E-33 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RPE_RS17670 27c87d4767ccea293b2d17982fafee7b 316 PANTHER PTHR12128:SF29 6 309 1.2E-148 T 23-04-2016 RPE_RS17670 27c87d4767ccea293b2d17982fafee7b 316 Gene3D G3DSA:3.20.20.70 4 304 7.1E-55 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS17670 27c87d4767ccea293b2d17982fafee7b 316 Pfam PF00701 Dihydrodipicolinate synthetase family 8 298 8.9E-22 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RPE_RS17670 27c87d4767ccea293b2d17982fafee7b 316 PANTHER PTHR12128 6 309 1.2E-148 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RPE_RS17670 27c87d4767ccea293b2d17982fafee7b 316 PIRSF PIRSF001365 3 310 8.6E-39 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RPE_RS17670 27c87d4767ccea293b2d17982fafee7b 316 SMART SM01130 6 301 5.3E-41 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RPE_RS17670 27c87d4767ccea293b2d17982fafee7b 316 SUPERFAMILY SSF51569 4 299 4.19E-50 T 23-04-2016 RPE_RS17555 c5c03ca4c458876c041473ef7c9d2891 453 Gene3D G3DSA:3.40.50.720 231 434 4.9E-69 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS17555 c5c03ca4c458876c041473ef7c9d2891 453 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 316 417 2.9E-29 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 RPE_RS17555 c5c03ca4c458876c041473ef7c9d2891 453 PANTHER PTHR11374:SF18 1 437 6.2E-204 T 23-04-2016 RPE_RS17555 c5c03ca4c458876c041473ef7c9d2891 453 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 182 3.2E-57 T 23-04-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 RPE_RS17555 c5c03ca4c458876c041473ef7c9d2891 453 Gene3D G3DSA:3.40.50.720 1 203 2.9E-66 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS17555 c5c03ca4c458876c041473ef7c9d2891 453 SMART SM00984 316 417 8.1E-42 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 RPE_RS17555 c5c03ca4c458876c041473ef7c9d2891 453 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 413 1.2E-124 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 RPE_RS17555 c5c03ca4c458876c041473ef7c9d2891 453 SUPERFAMILY SSF51735 1 204 4.97E-47 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS17555 c5c03ca4c458876c041473ef7c9d2891 453 PIRSF PIRSF000124 1 432 1.0E-136 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 RPE_RS17555 c5c03ca4c458876c041473ef7c9d2891 453 Gene3D G3DSA:1.20.5.100 204 230 2.9E-16 T 23-04-2016 RPE_RS17555 c5c03ca4c458876c041473ef7c9d2891 453 SUPERFAMILY SSF48179 200 293 2.04E-31 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RPE_RS17555 c5c03ca4c458876c041473ef7c9d2891 453 PIRSF PIRSF500134 1 435 2.0E-163 T 23-04-2016 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00500+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|UniPathway: UPA00038 RPE_RS17555 c5c03ca4c458876c041473ef7c9d2891 453 PANTHER PTHR11374 1 437 6.2E-204 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 RPE_RS17555 c5c03ca4c458876c041473ef7c9d2891 453 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 200 292 1.9E-35 T 23-04-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 RPE_RS17555 c5c03ca4c458876c041473ef7c9d2891 453 SUPERFAMILY SSF52413 303 427 1.7E-33 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 RPE_RS10090 2ef2d957018ae7ddc37010f63bc2f09c 272 Pfam PF00691 OmpA family 170 247 5.1E-10 T 23-04-2016 IPR006665 OmpA-like domain RPE_RS10090 2ef2d957018ae7ddc37010f63bc2f09c 272 PANTHER PTHR30329 3 272 2.1E-85 T 23-04-2016 RPE_RS10090 2ef2d957018ae7ddc37010f63bc2f09c 272 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 3 55 1.0E-19 T 23-04-2016 IPR025713 Motility protein B, N-terminal domain RPE_RS10090 2ef2d957018ae7ddc37010f63bc2f09c 272 Gene3D G3DSA:3.30.1330.60 151 259 1.6E-15 T 23-04-2016 IPR006665 OmpA-like domain RPE_RS10090 2ef2d957018ae7ddc37010f63bc2f09c 272 SUPERFAMILY SSF103088 154 259 5.62E-17 T 23-04-2016 IPR006665 OmpA-like domain RPE_RS10090 2ef2d957018ae7ddc37010f63bc2f09c 272 PANTHER PTHR30329:SF2 3 272 2.1E-85 T 23-04-2016 RPE_RS06775 ae113938e4be6cd86957ff137de45cdb 294 Pfam PF02310 B12 binding domain 174 273 2.4E-10 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RPE_RS06775 ae113938e4be6cd86957ff137de45cdb 294 Gene3D G3DSA:3.40.50.280 176 289 1.6E-5 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RPE_RS06775 ae113938e4be6cd86957ff137de45cdb 294 SUPERFAMILY SSF52242 170 290 1.7E-11 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RPE_RS06775 ae113938e4be6cd86957ff137de45cdb 294 Pfam PF02607 B12 binding domain 85 152 4.0E-6 T 23-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain RPE_RS00090 c6431a725013217b5f3ca540c98d371a 306 PANTHER PTHR21708 1 306 2.3E-130 T 23-04-2016 RPE_RS00090 c6431a725013217b5f3ca540c98d371a 306 Gene3D G3DSA:1.10.1040.10 179 302 4.9E-20 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RPE_RS00090 c6431a725013217b5f3ca540c98d371a 306 SUPERFAMILY SSF48179 180 303 2.01E-25 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RPE_RS00090 c6431a725013217b5f3ca540c98d371a 306 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 305 4.6E-57 T 23-04-2016 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0015940|GO:0016491|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 RPE_RS00090 c6431a725013217b5f3ca540c98d371a 306 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 152 9.9E-39 T 23-04-2016 IPR013332 Ketopantoate reductase, N-terminal domain GO:0008677|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 RPE_RS00090 c6431a725013217b5f3ca540c98d371a 306 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 179 301 2.0E-18 T 23-04-2016 IPR013752 Ketopantoate reductase, C-terminal domain GO:0016491|GO:0050661|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 RPE_RS00090 c6431a725013217b5f3ca540c98d371a 306 PANTHER PTHR21708:SF26 1 306 2.3E-130 T 23-04-2016 RPE_RS00090 c6431a725013217b5f3ca540c98d371a 306 SUPERFAMILY SSF51735 1 134 3.35E-12 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS00090 c6431a725013217b5f3ca540c98d371a 306 Gene3D G3DSA:3.40.50.720 1 176 5.2E-52 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS14935 1c43deb215e5e18ee518b7d0231d4c12 1247 Pfam PF13116 Protein of unknown function 567 853 9.3E-10 T 23-04-2016 IPR025263 Domain of unknown function DUF3971 RPE_RS10370 804ae53f0526864a66cc4eb65665bc1f 177 Gene3D G3DSA:3.30.70.1290 3 136 2.7E-14 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RPE_RS10370 804ae53f0526864a66cc4eb65665bc1f 177 Pfam PF01797 Transposase IS200 like 19 131 6.3E-5 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RPE_RS10370 804ae53f0526864a66cc4eb65665bc1f 177 SMART SM01321 9 132 2.3E-35 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RPE_RS10370 804ae53f0526864a66cc4eb65665bc1f 177 PANTHER PTHR36966 1 177 2.1E-31 T 23-04-2016 RPE_RS10370 804ae53f0526864a66cc4eb65665bc1f 177 PANTHER PTHR36966:SF1 1 177 2.1E-31 T 23-04-2016 RPE_RS10370 804ae53f0526864a66cc4eb65665bc1f 177 SUPERFAMILY SSF143422 1 137 4.71E-33 T 23-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 RPE_RS01410 b0c6ab50cd2ed0cf545b04b280a9add4 476 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 11 77 1.2E-22 T 23-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RPE_RS01410 b0c6ab50cd2ed0cf545b04b280a9add4 476 SMART SM00382 146 330 7.9E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS01410 b0c6ab50cd2ed0cf545b04b280a9add4 476 PIRSF PIRSF039072 2 476 1.6E-280 T 23-04-2016 RPE_RS01410 b0c6ab50cd2ed0cf545b04b280a9add4 476 Gene3D G3DSA:3.40.50.300 81 355 1.1E-108 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01410 b0c6ab50cd2ed0cf545b04b280a9add4 476 Gene3D G3DSA:2.40.10.170 5 79 7.8E-35 T 23-04-2016 RPE_RS01410 b0c6ab50cd2ed0cf545b04b280a9add4 476 PANTHER PTHR15184 6 475 0.0 T 23-04-2016 RPE_RS01410 b0c6ab50cd2ed0cf545b04b280a9add4 476 PANTHER PTHR15184:SF8 6 475 0.0 T 23-04-2016 RPE_RS01410 b0c6ab50cd2ed0cf545b04b280a9add4 476 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 344 353 - T 23-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RPE_RS01410 b0c6ab50cd2ed0cf545b04b280a9add4 476 SUPERFAMILY SSF47917 356 471 5.23E-53 T 23-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RPE_RS01410 b0c6ab50cd2ed0cf545b04b280a9add4 476 Hamap MF_01347 ATP synthase subunit beta [atpB]. 6 471 57.207 T 23-04-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RPE_RS01410 b0c6ab50cd2ed0cf545b04b280a9add4 476 Gene3D G3DSA:1.10.1140.10 356 475 2.3E-56 T 23-04-2016 IPR024034 ATPase, F1 complex beta subunit/V1 complex, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RPE_RS01410 b0c6ab50cd2ed0cf545b04b280a9add4 476 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 134 353 4.1E-63 T 23-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RPE_RS01410 b0c6ab50cd2ed0cf545b04b280a9add4 476 SUPERFAMILY SSF50615 6 79 9.42E-26 T 23-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RPE_RS01410 b0c6ab50cd2ed0cf545b04b280a9add4 476 SUPERFAMILY SSF52540 82 359 2.57E-88 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01410 b0c6ab50cd2ed0cf545b04b280a9add4 476 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 8 471 3.3E-249 T 23-04-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RPE_RS00575 c4e66ea2f2169c45fea0deb3eaa503b1 959 Pfam PF13432 Tetratricopeptide repeat 34 89 2.0E-6 T 23-04-2016 RPE_RS00575 c4e66ea2f2169c45fea0deb3eaa503b1 959 Gene3D G3DSA:1.25.40.10 155 244 2.3E-24 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS00575 c4e66ea2f2169c45fea0deb3eaa503b1 959 SMART SM00028 192 225 9.5E-6 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS00575 c4e66ea2f2169c45fea0deb3eaa503b1 959 SMART SM00028 22 55 95.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS00575 c4e66ea2f2169c45fea0deb3eaa503b1 959 SMART SM00028 56 89 4.2 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS00575 c4e66ea2f2169c45fea0deb3eaa503b1 959 SMART SM00028 90 123 1.4E-4 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS00575 c4e66ea2f2169c45fea0deb3eaa503b1 959 SMART SM00028 226 259 0.003 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS00575 c4e66ea2f2169c45fea0deb3eaa503b1 959 SMART SM00028 328 361 160.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS00575 c4e66ea2f2169c45fea0deb3eaa503b1 959 SMART SM00028 294 327 24.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS00575 c4e66ea2f2169c45fea0deb3eaa503b1 959 SMART SM00028 260 293 16.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS00575 c4e66ea2f2169c45fea0deb3eaa503b1 959 SMART SM00028 124 157 2.3E-5 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS00575 c4e66ea2f2169c45fea0deb3eaa503b1 959 SMART SM00028 158 191 6.4E-5 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS00575 c4e66ea2f2169c45fea0deb3eaa503b1 959 SMART SM00028 362 395 12.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS00575 c4e66ea2f2169c45fea0deb3eaa503b1 959 Pfam PF13181 Tetratricopeptide repeat 92 122 0.012 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS00575 c4e66ea2f2169c45fea0deb3eaa503b1 959 Gene3D G3DSA:3.40.50.150 705 824 8.8E-18 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS00575 c4e66ea2f2169c45fea0deb3eaa503b1 959 SUPERFAMILY SSF53335 714 908 6.69E-22 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS00575 c4e66ea2f2169c45fea0deb3eaa503b1 959 Gene3D G3DSA:1.25.40.10 67 154 8.4E-29 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS00575 c4e66ea2f2169c45fea0deb3eaa503b1 959 SUPERFAMILY SSF48452 195 429 1.14E-40 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS00575 c4e66ea2f2169c45fea0deb3eaa503b1 959 Pfam PF13649 Methyltransferase domain 720 815 2.5E-11 T 23-04-2016 RPE_RS00575 c4e66ea2f2169c45fea0deb3eaa503b1 959 Pfam PF13424 Tetratricopeptide repeat 294 358 2.1E-7 T 23-04-2016 RPE_RS00575 c4e66ea2f2169c45fea0deb3eaa503b1 959 Gene3D G3DSA:1.25.40.10 245 429 4.1E-36 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS00575 c4e66ea2f2169c45fea0deb3eaa503b1 959 PANTHER PTHR23083 19 400 1.6E-76 T 23-04-2016 RPE_RS00575 c4e66ea2f2169c45fea0deb3eaa503b1 959 Pfam PF07719 Tetratricopeptide repeat 192 225 1.4E-5 T 23-04-2016 IPR013105 Tetratricopeptide repeat 2 RPE_RS00575 c4e66ea2f2169c45fea0deb3eaa503b1 959 Pfam PF07719 Tetratricopeptide repeat 226 258 5.3E-6 T 23-04-2016 IPR013105 Tetratricopeptide repeat 2 RPE_RS00575 c4e66ea2f2169c45fea0deb3eaa503b1 959 Pfam PF13414 TPR repeat 133 169 2.0E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS00575 c4e66ea2f2169c45fea0deb3eaa503b1 959 Gene3D G3DSA:1.25.40.10 18 66 3.3E-4 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS00575 c4e66ea2f2169c45fea0deb3eaa503b1 959 SUPERFAMILY SSF48452 16 273 2.39E-51 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS04375 06bfd2b79c75be10cb3f40c89add4c52 281 SUPERFAMILY SSF88713 8 279 8.9E-60 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RPE_RS04375 06bfd2b79c75be10cb3f40c89add4c52 281 Gene3D G3DSA:3.20.20.370 7 280 2.5E-61 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RPE_RS04375 06bfd2b79c75be10cb3f40c89add4c52 281 PANTHER PTHR31609 3 280 1.6E-61 T 23-04-2016 RPE_RS04375 06bfd2b79c75be10cb3f40c89add4c52 281 Pfam PF04794 YdjC-like protein 9 274 1.3E-50 T 23-04-2016 IPR006879 Chitooligosaccharide deacetylase ChbG-like RPE_RS03635 090ef298aed505c59589eacc34bff0e0 308 Gene3D G3DSA:1.25.40.10 23 81 2.1E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS03635 090ef298aed505c59589eacc34bff0e0 308 SUPERFAMILY SSF53335 100 291 1.82E-32 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS03635 090ef298aed505c59589eacc34bff0e0 308 SUPERFAMILY SSF48452 17 99 4.47E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS03635 090ef298aed505c59589eacc34bff0e0 308 Pfam PF08241 Methyltransferase domain 153 246 1.6E-19 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 RPE_RS03635 090ef298aed505c59589eacc34bff0e0 308 Gene3D G3DSA:3.40.50.150 102 282 3.1E-29 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS03635 090ef298aed505c59589eacc34bff0e0 308 PANTHER PTHR10108 108 248 3.8E-22 T 23-04-2016 RPE_RS01280 877b5b687906f46e7276a3bf3e4122f0 201 Pfam PF13410 Glutathione S-transferase, C-terminal domain 127 182 6.8E-7 T 23-04-2016 RPE_RS01280 877b5b687906f46e7276a3bf3e4122f0 201 PANTHER PTHR11260:SF285 1 197 1.2E-45 T 23-04-2016 RPE_RS01280 877b5b687906f46e7276a3bf3e4122f0 201 Gene3D G3DSA:3.40.30.10 2 91 1.4E-28 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS01280 877b5b687906f46e7276a3bf3e4122f0 201 Gene3D G3DSA:1.20.1050.10 92 193 8.4E-21 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RPE_RS01280 877b5b687906f46e7276a3bf3e4122f0 201 Pfam PF02798 Glutathione S-transferase, N-terminal domain 5 74 9.7E-17 T 23-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RPE_RS01280 877b5b687906f46e7276a3bf3e4122f0 201 PANTHER PTHR11260 1 197 1.2E-45 T 23-04-2016 RPE_RS01280 877b5b687906f46e7276a3bf3e4122f0 201 SUPERFAMILY SSF47616 81 194 8.21E-24 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RPE_RS01280 877b5b687906f46e7276a3bf3e4122f0 201 SUPERFAMILY SSF52833 1 83 3.32E-25 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS02090 985c704bc42fc733b3aef1c825ee7220 210 Gene3D G3DSA:3.40.50.1000 2 205 7.2E-44 T 23-04-2016 IPR023214 HAD-like domain RPE_RS02090 985c704bc42fc733b3aef1c825ee7220 210 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 131 188 7.6E-14 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RPE_RS02090 985c704bc42fc733b3aef1c825ee7220 210 PANTHER PTHR12725 2 209 7.9E-72 T 23-04-2016 RPE_RS02090 985c704bc42fc733b3aef1c825ee7220 210 SUPERFAMILY SSF56784 1 200 3.57E-34 T 23-04-2016 IPR023214 HAD-like domain RPE_RS02090 985c704bc42fc733b3aef1c825ee7220 210 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 2 13 3.8E-15 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RPE_RS02090 985c704bc42fc733b3aef1c825ee7220 210 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 179 192 3.8E-15 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RPE_RS02090 985c704bc42fc733b3aef1c825ee7220 210 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 134 150 3.8E-15 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RPE_RS02090 985c704bc42fc733b3aef1c825ee7220 210 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 152 172 3.8E-15 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RPE_RS02090 985c704bc42fc733b3aef1c825ee7220 210 TIGRFAM TIGR02247 HAD-1A3-hyp: epoxide hydrolase N-terminal domain-like phosphatase 2 206 4.6E-66 T 23-04-2016 IPR011945 Predicted HAD-superfamily phosphatase, subfamily IA/Epoxide hydrolase, N-terminal RPE_RS02090 985c704bc42fc733b3aef1c825ee7220 210 PANTHER PTHR12725:SF67 2 209 7.9E-72 T 23-04-2016 RPE_RS02090 985c704bc42fc733b3aef1c825ee7220 210 Pfam PF13419 Haloacid dehalogenase-like hydrolase 90 190 9.3E-11 T 23-04-2016 IPR023214 HAD-like domain RPE_RS15140 d2e26da92b0586e4f77e7aa75a9cf008 399 SUPERFAMILY SSF55781 17 185 1.42E-19 T 23-04-2016 IPR029016 GAF domain-like RPE_RS15140 d2e26da92b0586e4f77e7aa75a9cf008 399 PANTHER PTHR24423:SF472 16 44 9.2E-50 T 23-04-2016 RPE_RS15140 d2e26da92b0586e4f77e7aa75a9cf008 399 PANTHER PTHR24423:SF472 184 394 9.2E-50 T 23-04-2016 RPE_RS15140 d2e26da92b0586e4f77e7aa75a9cf008 399 Pfam PF07568 Histidine kinase 205 278 2.3E-21 T 23-04-2016 IPR011495 Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain RPE_RS15140 d2e26da92b0586e4f77e7aa75a9cf008 399 Gene3D G3DSA:3.30.565.10 262 396 2.4E-12 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS15140 d2e26da92b0586e4f77e7aa75a9cf008 399 PANTHER PTHR24423 16 44 9.2E-50 T 23-04-2016 RPE_RS15140 d2e26da92b0586e4f77e7aa75a9cf008 399 PANTHER PTHR24423 184 394 9.2E-50 T 23-04-2016 RPE_RS15140 d2e26da92b0586e4f77e7aa75a9cf008 399 SUPERFAMILY SSF55874 265 396 6.29E-15 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS15140 d2e26da92b0586e4f77e7aa75a9cf008 399 Gene3D G3DSA:3.30.450.40 18 197 3.8E-35 T 23-04-2016 IPR029016 GAF domain-like RPE_RS15140 d2e26da92b0586e4f77e7aa75a9cf008 399 Pfam PF13185 GAF domain 41 184 4.7E-12 T 23-04-2016 IPR003018 GAF domain GO:0005515 RPE_RS15140 d2e26da92b0586e4f77e7aa75a9cf008 399 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 300 393 9.9E-7 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS15140 d2e26da92b0586e4f77e7aa75a9cf008 399 SMART SM00065 42 193 2.3E-11 T 23-04-2016 IPR003018 GAF domain GO:0005515 RPE_RS15140 d2e26da92b0586e4f77e7aa75a9cf008 399 SMART SM00387 297 396 4.1E-13 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS23320 dd971f34a5a621ca2de78cba4efd556b 924 Pfam PF12698 ABC-2 family transporter protein 581 916 2.6E-34 T 23-04-2016 RPE_RS23320 dd971f34a5a621ca2de78cba4efd556b 924 Pfam PF00005 ABC transporter 29 176 1.0E-26 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS23320 dd971f34a5a621ca2de78cba4efd556b 924 Pfam PF00005 ABC transporter 295 438 2.4E-26 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS23320 dd971f34a5a621ca2de78cba4efd556b 924 SUPERFAMILY SSF52540 271 499 7.88E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS23320 dd971f34a5a621ca2de78cba4efd556b 924 SMART SM00382 38 226 1.4E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS23320 dd971f34a5a621ca2de78cba4efd556b 924 SMART SM00382 303 494 3.3E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS23320 dd971f34a5a621ca2de78cba4efd556b 924 SUPERFAMILY SSF52540 18 240 3.22E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS23320 dd971f34a5a621ca2de78cba4efd556b 924 PANTHER PTHR24220:SF388 15 398 1.9E-248 T 23-04-2016 RPE_RS23320 dd971f34a5a621ca2de78cba4efd556b 924 PANTHER PTHR24220 15 398 1.9E-248 T 23-04-2016 RPE_RS23320 dd971f34a5a621ca2de78cba4efd556b 924 Gene3D G3DSA:3.40.50.300 270 500 5.4E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS23320 dd971f34a5a621ca2de78cba4efd556b 924 Gene3D G3DSA:3.40.50.300 12 241 6.6E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS23320 dd971f34a5a621ca2de78cba4efd556b 924 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS01635 36e6a85e9e4c8901a3ca15fcd765f3db 65 SUPERFAMILY SSF56918 1 50 7.33E-21 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS01635 36e6a85e9e4c8901a3ca15fcd765f3db 65 Pfam PF00556 Antenna complex alpha/beta subunit 6 41 1.6E-12 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS01635 36e6a85e9e4c8901a3ca15fcd765f3db 65 PRINTS PR00673 Light harvesting protein A chain signature 31 42 4.3E-11 T 23-04-2016 IPR018332 Antenna complex, alpha subunit RPE_RS01635 36e6a85e9e4c8901a3ca15fcd765f3db 65 PRINTS PR00673 Light harvesting protein A chain signature 5 12 4.3E-11 T 23-04-2016 IPR018332 Antenna complex, alpha subunit RPE_RS01635 36e6a85e9e4c8901a3ca15fcd765f3db 65 PRINTS PR00673 Light harvesting protein A chain signature 12 31 4.3E-11 T 23-04-2016 IPR018332 Antenna complex, alpha subunit RPE_RS01635 36e6a85e9e4c8901a3ca15fcd765f3db 65 Gene3D G3DSA:4.10.220.20 1 51 6.6E-29 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS17595 5bf6c7b36db9ad38e09a46a098d31940 484 SUPERFAMILY SSF51120 342 469 1.31E-24 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RPE_RS17595 5bf6c7b36db9ad38e09a46a098d31940 484 SUPERFAMILY SSF51120 250 297 1.31E-24 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RPE_RS17595 5bf6c7b36db9ad38e09a46a098d31940 484 SUPERFAMILY SSF51126 25 276 2.03E-8 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor RPE_RS17595 5bf6c7b36db9ad38e09a46a098d31940 484 SMART SM00710 178 203 2800.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RPE_RS17595 5bf6c7b36db9ad38e09a46a098d31940 484 SMART SM00710 41 63 160.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RPE_RS17595 5bf6c7b36db9ad38e09a46a098d31940 484 SMART SM00710 205 227 1100.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RPE_RS17595 5bf6c7b36db9ad38e09a46a098d31940 484 SMART SM00710 100 121 1100.0 T 23-04-2016 IPR006626 Parallel beta-helix repeat RPE_RS17595 5bf6c7b36db9ad38e09a46a098d31940 484 Gene3D G3DSA:2.150.10.10 226 266 1.5E-23 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RPE_RS17595 5bf6c7b36db9ad38e09a46a098d31940 484 Gene3D G3DSA:2.150.10.10 348 478 1.5E-23 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RPE_RS17595 5bf6c7b36db9ad38e09a46a098d31940 484 PRINTS PR00313 NodO calcium binding signature 384 392 1.4E-9 T 23-04-2016 RPE_RS17595 5bf6c7b36db9ad38e09a46a098d31940 484 PRINTS PR00313 NodO calcium binding signature 363 374 1.4E-9 T 23-04-2016 RPE_RS17595 5bf6c7b36db9ad38e09a46a098d31940 484 PRINTS PR00313 NodO calcium binding signature 402 411 1.4E-9 T 23-04-2016 RPE_RS17595 5bf6c7b36db9ad38e09a46a098d31940 484 PRINTS PR00313 NodO calcium binding signature 393 401 1.4E-9 T 23-04-2016 RPE_RS17595 5bf6c7b36db9ad38e09a46a098d31940 484 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 371 389 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RPE_RS17595 5bf6c7b36db9ad38e09a46a098d31940 484 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 380 398 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RPE_RS17595 5bf6c7b36db9ad38e09a46a098d31940 484 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 389 407 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RPE_RS17595 5bf6c7b36db9ad38e09a46a098d31940 484 Gene3D G3DSA:2.160.20.10 34 113 3.1E-4 T 23-04-2016 IPR012334 Pectin lyase fold RPE_RS20425 b1b9c013e7b7e7d1c87c63256a314928 69 Pfam PF04325 Protein of unknown function (DUF465) 14 59 4.5E-15 T 23-04-2016 IPR007420 Protein of unknown function DUF465 RPE_RS24250 52b858c667c9ae5e940b8f0ca92e44a0 293 PANTHER PTHR11451:SF41 5 284 1.8E-47 T 23-04-2016 RPE_RS24250 52b858c667c9ae5e940b8f0ca92e44a0 293 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 7 287 7.7E-52 T 23-04-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 RPE_RS24250 52b858c667c9ae5e940b8f0ca92e44a0 293 SUPERFAMILY SSF52374 5 288 1.23E-81 T 23-04-2016 RPE_RS24250 52b858c667c9ae5e940b8f0ca92e44a0 293 PRINTS PR00987 Glutamyl-tRNA synthetase signature 36 49 7.7E-16 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RPE_RS24250 52b858c667c9ae5e940b8f0ca92e44a0 293 PRINTS PR00987 Glutamyl-tRNA synthetase signature 202 212 7.7E-16 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RPE_RS24250 52b858c667c9ae5e940b8f0ca92e44a0 293 PRINTS PR00987 Glutamyl-tRNA synthetase signature 218 226 7.7E-16 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RPE_RS24250 52b858c667c9ae5e940b8f0ca92e44a0 293 PRINTS PR00987 Glutamyl-tRNA synthetase signature 7 19 7.7E-16 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RPE_RS24250 52b858c667c9ae5e940b8f0ca92e44a0 293 PRINTS PR00987 Glutamyl-tRNA synthetase signature 21 32 7.7E-16 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RPE_RS24250 52b858c667c9ae5e940b8f0ca92e44a0 293 PANTHER PTHR11451 5 284 1.8E-47 T 23-04-2016 RPE_RS24250 52b858c667c9ae5e940b8f0ca92e44a0 293 Gene3D G3DSA:3.40.50.620 5 68 1.0E-42 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS24250 52b858c667c9ae5e940b8f0ca92e44a0 293 Gene3D G3DSA:3.40.50.620 204 253 1.0E-42 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS24250 52b858c667c9ae5e940b8f0ca92e44a0 293 Gene3D G3DSA:3.90.800.10 69 200 6.0E-21 T 23-04-2016 RPE_RS24250 52b858c667c9ae5e940b8f0ca92e44a0 293 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 10 21 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS20550 bb7e2a6c0ea0161bf77895954d85b08b 142 PANTHER PTHR33797:SF1 1 142 7.9E-54 T 23-04-2016 RPE_RS20550 bb7e2a6c0ea0161bf77895954d85b08b 142 Pfam PF02566 OsmC-like protein 44 137 4.5E-19 T 23-04-2016 IPR003718 OsmC/Ohr family RPE_RS20550 bb7e2a6c0ea0161bf77895954d85b08b 142 PANTHER PTHR33797 1 142 7.9E-54 T 23-04-2016 RPE_RS20550 bb7e2a6c0ea0161bf77895954d85b08b 142 TIGRFAM TIGR03562 osmo_induc_OsmC: peroxiredoxin, OsmC subfamily 6 138 4.2E-60 T 23-04-2016 IPR019904 Peroxiredoxin OsmC GO:0004601|GO:0006979 KEGG: 00480+1.11.1.15 RPE_RS20550 bb7e2a6c0ea0161bf77895954d85b08b 142 Gene3D G3DSA:3.30.300.20 6 140 1.2E-52 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta RPE_RS20550 bb7e2a6c0ea0161bf77895954d85b08b 142 SUPERFAMILY SSF82784 7 140 1.18E-39 T 23-04-2016 IPR003718 OsmC/Ohr family RPE_RS01960 0846523f006117c59c692f6c8e5123ce 559 Gene3D G3DSA:3.30.450.20 172 288 8.4E-8 T 23-04-2016 RPE_RS01960 0846523f006117c59c692f6c8e5123ce 559 Pfam PF00672 HAMP domain 295 363 6.0E-10 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS01960 0846523f006117c59c692f6c8e5123ce 559 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 377 542 1.3E-41 T 23-04-2016 IPR000160 GGDEF domain RPE_RS01960 0846523f006117c59c692f6c8e5123ce 559 PANTHER PTHR10799:SF750 266 541 1.8E-24 T 23-04-2016 RPE_RS01960 0846523f006117c59c692f6c8e5123ce 559 SMART SM00304 314 367 1.0E-8 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS01960 0846523f006117c59c692f6c8e5123ce 559 SUPERFAMILY SSF158472 314 364 7.85E-7 T 23-04-2016 RPE_RS01960 0846523f006117c59c692f6c8e5123ce 559 SUPERFAMILY SSF55073 385 542 3.37E-40 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS01960 0846523f006117c59c692f6c8e5123ce 559 Gene3D G3DSA:3.30.450.20 98 171 5.1E-15 T 23-04-2016 RPE_RS01960 0846523f006117c59c692f6c8e5123ce 559 Pfam PF00990 Diguanylate cyclase, GGDEF domain 380 539 8.8E-45 T 23-04-2016 IPR000160 GGDEF domain RPE_RS01960 0846523f006117c59c692f6c8e5123ce 559 Gene3D G3DSA:3.30.70.270 382 542 1.6E-44 T 23-04-2016 RPE_RS01960 0846523f006117c59c692f6c8e5123ce 559 SMART SM00267 369 544 1.5E-57 T 23-04-2016 IPR000160 GGDEF domain RPE_RS01960 0846523f006117c59c692f6c8e5123ce 559 PANTHER PTHR10799 266 541 1.8E-24 T 23-04-2016 RPE_RS08665 96319a0a7a502c6940fba6259ff4761a 456 Pfam PF00361 Proton-conducting membrane transporter 116 396 2.1E-45 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RPE_RS08665 96319a0a7a502c6940fba6259ff4761a 456 PANTHER PTHR22773 1 403 1.6E-75 T 23-04-2016 RPE_RS08665 96319a0a7a502c6940fba6259ff4761a 456 PANTHER PTHR22773:SF41 1 403 1.6E-75 T 23-04-2016 RPE_RS08665 96319a0a7a502c6940fba6259ff4761a 456 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 4 446 14.386 T 23-04-2016 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 RPE_RS15195 c4c1c32e405bef997eedf4ec24ed632d 255 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 8 244 9.5E-93 T 23-04-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 RPE_RS15195 c4c1c32e405bef997eedf4ec24ed632d 255 Gene3D G3DSA:3.20.20.70 7 246 9.8E-98 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS15195 c4c1c32e405bef997eedf4ec24ed632d 255 PANTHER PTHR30456 6 251 1.1E-126 T 23-04-2016 RPE_RS15195 c4c1c32e405bef997eedf4ec24ed632d 255 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 8 244 2.2E-83 T 23-04-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 RPE_RS15195 c4c1c32e405bef997eedf4ec24ed632d 255 SUPERFAMILY SSF63892 7 248 4.18E-90 T 23-04-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 RPE_RS15195 c4c1c32e405bef997eedf4ec24ed632d 255 PANTHER PTHR30456:SF0 6 251 1.1E-126 T 23-04-2016 RPE_RS15195 c4c1c32e405bef997eedf4ec24ed632d 255 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 249 118.178 T 23-04-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 RPE_RS07635 b223aa33465c08752f55c422733d4c28 165 Gene3D G3DSA:2.60.120.10 43 87 5.1E-4 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS07635 b223aa33465c08752f55c422733d4c28 165 TIGRFAM TIGR04366 cupin_WbuC: cupin fold metalloprotein, WbuC family 16 145 3.1E-34 T 23-04-2016 IPR027565 Cupin fold metalloprotein, WbuC family RPE_RS07635 b223aa33465c08752f55c422733d4c28 165 SUPERFAMILY SSF51182 43 143 2.39E-6 T 23-04-2016 IPR011051 RmlC-like cupin domain RPE_RS22980 6dd3889f70763bc41194f87a20522256 383 PANTHER PTHR30482:SF1 110 375 9.7E-105 T 23-04-2016 RPE_RS22980 6dd3889f70763bc41194f87a20522256 383 PANTHER PTHR30482 110 375 9.7E-105 T 23-04-2016 RPE_RS22980 6dd3889f70763bc41194f87a20522256 383 PANTHER PTHR30482 2 79 9.7E-105 T 23-04-2016 RPE_RS22980 6dd3889f70763bc41194f87a20522256 383 Pfam PF02653 Branched-chain amino acid transport system / permease component 35 335 3.8E-35 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RPE_RS22980 6dd3889f70763bc41194f87a20522256 383 PANTHER PTHR30482:SF1 2 79 9.7E-105 T 23-04-2016 RPE_RS22980 6dd3889f70763bc41194f87a20522256 383 TIGRFAM TIGR03408 urea_trans_UrtC: urea ABC transporter, permease protein UrtC 27 345 1.9E-126 T 23-04-2016 IPR017778 ABC transporter, urea, permease protein, UrtC RPE_RS02035 d9ddc4fec0b00b4c21d475e8b1a98296 291 Gene3D G3DSA:3.10.129.10 124 284 4.3E-55 T 23-04-2016 IPR029069 HotDog domain RPE_RS02035 d9ddc4fec0b00b4c21d475e8b1a98296 291 PANTHER PTHR11066:SF34 1 289 4.9E-116 T 23-04-2016 RPE_RS02035 d9ddc4fec0b00b4c21d475e8b1a98296 291 TIGRFAM TIGR00189 tesB: acyl-CoA thioesterase II 12 283 4.1E-93 T 23-04-2016 IPR003703 Acyl-CoA thioesterase GO:0006637|GO:0047617 RPE_RS02035 d9ddc4fec0b00b4c21d475e8b1a98296 291 SUPERFAMILY SSF54637 116 283 6.47E-55 T 23-04-2016 IPR029069 HotDog domain RPE_RS02035 d9ddc4fec0b00b4c21d475e8b1a98296 291 Pfam PF13622 Thioesterase-like superfamily 32 280 2.6E-62 T 23-04-2016 RPE_RS02035 d9ddc4fec0b00b4c21d475e8b1a98296 291 Gene3D G3DSA:3.10.129.10 2 111 4.0E-46 T 23-04-2016 IPR029069 HotDog domain RPE_RS02035 d9ddc4fec0b00b4c21d475e8b1a98296 291 SUPERFAMILY SSF54637 5 111 4.74E-38 T 23-04-2016 IPR029069 HotDog domain RPE_RS02035 d9ddc4fec0b00b4c21d475e8b1a98296 291 PANTHER PTHR11066 1 289 4.9E-116 T 23-04-2016 IPR003703 Acyl-CoA thioesterase GO:0006637|GO:0047617 RPE_RS15675 43fec495fbdec680d11db638a519c0cf 257 PANTHER PTHR34148 4 256 5.7E-38 T 23-04-2016 RPE_RS15675 43fec495fbdec680d11db638a519c0cf 257 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 257 41.769 T 23-04-2016 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148 RPE_RS15675 43fec495fbdec680d11db638a519c0cf 257 Pfam PF02654 Cobalamin-5-phosphate synthase 17 250 6.4E-42 T 23-04-2016 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148 RPE_RS15675 43fec495fbdec680d11db638a519c0cf 257 TIGRFAM TIGR00317 cobS: cobalamin 5'-phosphate synthase 18 253 2.6E-32 T 23-04-2016 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148 RPE_RS15675 43fec495fbdec680d11db638a519c0cf 257 PANTHER PTHR34148:SF1 4 256 5.7E-38 T 23-04-2016 RPE_RS11305 733fbc662a7b310e90f1fab9e3311760 533 Gene3D G3DSA:3.40.50.980 190 344 1.2E-36 T 23-04-2016 RPE_RS11305 733fbc662a7b310e90f1fab9e3311760 533 Gene3D G3DSA:3.40.50.980 21 189 1.8E-37 T 23-04-2016 RPE_RS11305 733fbc662a7b310e90f1fab9e3311760 533 Pfam PF13193 AMP-binding enzyme C-terminal domain 439 514 7.4E-23 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RPE_RS11305 733fbc662a7b310e90f1fab9e3311760 533 Gene3D G3DSA:3.30.300.30 425 523 9.4E-31 T 23-04-2016 RPE_RS11305 733fbc662a7b310e90f1fab9e3311760 533 ProSitePatterns PS00455 Putative AMP-binding domain signature. 184 195 - T 23-04-2016 IPR020845 AMP-binding, conserved site RPE_RS11305 733fbc662a7b310e90f1fab9e3311760 533 Pfam PF00501 AMP-binding enzyme 26 430 7.5E-87 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS11305 733fbc662a7b310e90f1fab9e3311760 533 PANTHER PTHR24096 21 523 8.0E-136 T 23-04-2016 RPE_RS11305 733fbc662a7b310e90f1fab9e3311760 533 SUPERFAMILY SSF56801 20 527 5.1E-141 T 23-04-2016 RPE_RS11305 733fbc662a7b310e90f1fab9e3311760 533 Gene3D G3DSA:2.30.38.10 358 419 7.5E-20 T 23-04-2016 RPE_RS16425 9378f263c61d7bd9c1cef4113d3f0d27 769 SMART SM00919 166 404 1.5E-131 T 23-04-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 RPE_RS16425 9378f263c61d7bd9c1cef4113d3f0d27 769 Pfam PF03949 Malic enzyme, NAD binding domain 168 358 8.0E-19 T 23-04-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 RPE_RS16425 9378f263c61d7bd9c1cef4113d3f0d27 769 SUPERFAMILY SSF53659 433 756 1.36E-88 T 23-04-2016 RPE_RS16425 9378f263c61d7bd9c1cef4113d3f0d27 769 Pfam PF00390 Malic enzyme, N-terminal domain 22 154 2.3E-26 T 23-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RPE_RS16425 9378f263c61d7bd9c1cef4113d3f0d27 769 PANTHER PTHR23406 35 425 8.4E-152 T 23-04-2016 RPE_RS16425 9378f263c61d7bd9c1cef4113d3f0d27 769 Pfam PF01515 Phosphate acetyl/butaryl transferase 433 753 1.5E-93 T 23-04-2016 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 RPE_RS16425 9378f263c61d7bd9c1cef4113d3f0d27 769 Gene3D G3DSA:3.40.50.10380 9 163 5.3E-49 T 23-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RPE_RS16425 9378f263c61d7bd9c1cef4113d3f0d27 769 Gene3D G3DSA:3.40.50.10750 572 728 3.3E-48 T 23-04-2016 RPE_RS16425 9378f263c61d7bd9c1cef4113d3f0d27 769 SMART SM01274 21 154 2.9E-76 T 23-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RPE_RS16425 9378f263c61d7bd9c1cef4113d3f0d27 769 SUPERFAMILY SSF53223 13 164 2.52E-52 T 23-04-2016 RPE_RS16425 9378f263c61d7bd9c1cef4113d3f0d27 769 Gene3D G3DSA:3.40.50.720 164 452 1.7E-83 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS16425 9378f263c61d7bd9c1cef4113d3f0d27 769 SUPERFAMILY SSF51735 166 456 8.49E-83 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS16425 9378f263c61d7bd9c1cef4113d3f0d27 769 PIRSF PIRSF036684 1 761 0.0 T 23-04-2016 IPR012188 Malic enzyme, phosphate acetyl/butaryl transferase GO:0004473|GO:0005829|GO:0006108|GO:0016616|GO:0030145|GO:0046872|GO:0055114 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 RPE_RS12545 5e57819f43ec23bc1c8ac47e812bf8e4 299 PANTHER PTHR22911 15 298 3.1E-82 T 23-04-2016 RPE_RS12545 5e57819f43ec23bc1c8ac47e812bf8e4 299 Pfam PF00892 EamA-like transporter family 16 148 1.8E-22 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RPE_RS12545 5e57819f43ec23bc1c8ac47e812bf8e4 299 Pfam PF00892 EamA-like transporter family 162 296 4.3E-18 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RPE_RS12545 5e57819f43ec23bc1c8ac47e812bf8e4 299 SUPERFAMILY SSF103481 54 151 5.75E-16 T 23-04-2016 RPE_RS12545 5e57819f43ec23bc1c8ac47e812bf8e4 299 PANTHER PTHR22911:SF46 15 298 3.1E-82 T 23-04-2016 RPE_RS12545 5e57819f43ec23bc1c8ac47e812bf8e4 299 SUPERFAMILY SSF103481 206 298 1.31E-14 T 23-04-2016 RPE_RS07175 3c853c4732112d9c9d323264e4c6d1f2 240 SMART SM00448 19 129 4.9E-44 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS07175 3c853c4732112d9c9d323264e4c6d1f2 240 Gene3D G3DSA:3.40.50.2300 17 138 1.6E-39 T 23-04-2016 RPE_RS07175 3c853c4732112d9c9d323264e4c6d1f2 240 PANTHER PTHR26402 19 238 1.7E-83 T 23-04-2016 RPE_RS07175 3c853c4732112d9c9d323264e4c6d1f2 240 Pfam PF00486 Transcriptional regulatory protein, C terminal 166 236 9.1E-16 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS07175 3c853c4732112d9c9d323264e4c6d1f2 240 Gene3D G3DSA:1.10.10.10 145 237 3.7E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS07175 3c853c4732112d9c9d323264e4c6d1f2 240 SUPERFAMILY SSF52172 19 183 1.29E-39 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS07175 3c853c4732112d9c9d323264e4c6d1f2 240 PANTHER PTHR26402:SF596 19 238 1.7E-83 T 23-04-2016 RPE_RS07175 3c853c4732112d9c9d323264e4c6d1f2 240 SMART SM00862 164 236 3.5E-16 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS07175 3c853c4732112d9c9d323264e4c6d1f2 240 Pfam PF00072 Response regulator receiver domain 22 129 2.7E-29 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS16675 814642f03ed310608c24a854ddc9e61c 228 Gene3D G3DSA:3.40.50.2300 4 123 5.2E-37 T 23-04-2016 RPE_RS16675 814642f03ed310608c24a854ddc9e61c 228 Pfam PF00072 Response regulator receiver domain 5 112 2.2E-27 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS16675 814642f03ed310608c24a854ddc9e61c 228 SMART SM00862 149 225 8.1E-18 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS16675 814642f03ed310608c24a854ddc9e61c 228 Gene3D G3DSA:1.10.10.10 125 226 2.2E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS16675 814642f03ed310608c24a854ddc9e61c 228 SMART SM00448 3 113 7.5E-36 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS16675 814642f03ed310608c24a854ddc9e61c 228 PANTHER PTHR26402 3 225 1.1E-78 T 23-04-2016 RPE_RS16675 814642f03ed310608c24a854ddc9e61c 228 SUPERFAMILY SSF52172 3 126 3.13E-37 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS16675 814642f03ed310608c24a854ddc9e61c 228 PANTHER PTHR26402:SF531 3 225 1.1E-78 T 23-04-2016 RPE_RS16675 814642f03ed310608c24a854ddc9e61c 228 SUPERFAMILY SSF46894 124 225 6.03E-19 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RPE_RS16675 814642f03ed310608c24a854ddc9e61c 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 225 3.5E-16 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS13225 0a32f9ae998e6535f4cada4f32b8cbb2 169 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 10 166 1.2E-17 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS13225 0a32f9ae998e6535f4cada4f32b8cbb2 169 PANTHER PTHR30173 9 168 2.7E-29 T 23-04-2016 RPE_RS13225 0a32f9ae998e6535f4cada4f32b8cbb2 169 SUPERFAMILY SSF88946 11 74 2.08E-7 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS13225 0a32f9ae998e6535f4cada4f32b8cbb2 169 SUPERFAMILY SSF88659 88 168 7.66E-12 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS13225 0a32f9ae998e6535f4cada4f32b8cbb2 169 Gene3D G3DSA:1.10.1740.10 18 102 4.8E-5 T 23-04-2016 RPE_RS13225 0a32f9ae998e6535f4cada4f32b8cbb2 169 Gene3D G3DSA:1.10.10.10 103 167 2.1E-9 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS13225 0a32f9ae998e6535f4cada4f32b8cbb2 169 PANTHER PTHR30173:SF30 9 168 2.7E-29 T 23-04-2016 RPE_RS13225 0a32f9ae998e6535f4cada4f32b8cbb2 169 Pfam PF04542 Sigma-70 region 2 17 78 9.1E-5 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS13225 0a32f9ae998e6535f4cada4f32b8cbb2 169 Pfam PF08281 Sigma-70, region 4 111 162 4.1E-10 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS20540 8a320eb8d85951f52550cc87b7a78bb1 477 Gene3D G3DSA:3.40.1380.20 323 467 1.9E-44 T 23-04-2016 IPR015794 Pyruvate kinase, alpha/beta GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS20540 8a320eb8d85951f52550cc87b7a78bb1 477 PRINTS PR01050 Pyruvate kinase family signature 241 265 8.43E-65 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS20540 8a320eb8d85951f52550cc87b7a78bb1 477 PRINTS PR01050 Pyruvate kinase family signature 310 326 8.43E-65 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS20540 8a320eb8d85951f52550cc87b7a78bb1 477 PRINTS PR01050 Pyruvate kinase family signature 291 309 8.43E-65 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS20540 8a320eb8d85951f52550cc87b7a78bb1 477 PRINTS PR01050 Pyruvate kinase family signature 187 201 8.43E-65 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS20540 8a320eb8d85951f52550cc87b7a78bb1 477 PRINTS PR01050 Pyruvate kinase family signature 62 78 8.43E-65 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS20540 8a320eb8d85951f52550cc87b7a78bb1 477 PRINTS PR01050 Pyruvate kinase family signature 266 290 8.43E-65 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS20540 8a320eb8d85951f52550cc87b7a78bb1 477 PRINTS PR01050 Pyruvate kinase family signature 214 240 8.43E-65 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS20540 8a320eb8d85951f52550cc87b7a78bb1 477 Gene3D G3DSA:3.20.20.60 169 322 2.5E-93 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RPE_RS20540 8a320eb8d85951f52550cc87b7a78bb1 477 Gene3D G3DSA:3.20.20.60 5 75 2.5E-93 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RPE_RS20540 8a320eb8d85951f52550cc87b7a78bb1 477 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 5 468 8.6E-145 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS20540 8a320eb8d85951f52550cc87b7a78bb1 477 Pfam PF00224 Pyruvate kinase, barrel domain 5 334 2.2E-106 T 23-04-2016 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS20540 8a320eb8d85951f52550cc87b7a78bb1 477 SUPERFAMILY SSF50800 73 167 5.93E-23 T 23-04-2016 IPR011037 Pyruvate kinase-like, insert domain RPE_RS20540 8a320eb8d85951f52550cc87b7a78bb1 477 SUPERFAMILY SSF52935 320 471 6.93E-39 T 23-04-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS20540 8a320eb8d85951f52550cc87b7a78bb1 477 Pfam PF02887 Pyruvate kinase, alpha/beta domain 355 467 2.1E-33 T 23-04-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS20540 8a320eb8d85951f52550cc87b7a78bb1 477 PANTHER PTHR11817 2 470 1.9E-195 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS20540 8a320eb8d85951f52550cc87b7a78bb1 477 ProSitePatterns PS00110 Pyruvate kinase active site signature. 212 224 - T 23-04-2016 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS20540 8a320eb8d85951f52550cc87b7a78bb1 477 Gene3D G3DSA:2.40.33.10 76 168 7.7E-27 T 23-04-2016 IPR015806 Pyruvate kinase, beta-barrel insert domain GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS20540 8a320eb8d85951f52550cc87b7a78bb1 477 SUPERFAMILY SSF51621 2 78 1.36E-92 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RPE_RS20540 8a320eb8d85951f52550cc87b7a78bb1 477 SUPERFAMILY SSF51621 168 340 1.36E-92 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RPE_RS00085 aa8cf26e54004c22ea770ac17d6854c8 548 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 274 329 - T 23-04-2016 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS00085 aa8cf26e54004c22ea770ac17d6854c8 548 SUPERFAMILY SSF81442 83 542 8.37E-118 T 23-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS00085 aa8cf26e54004c22ea770ac17d6854c8 548 PANTHER PTHR10422:SF21 78 541 1.3E-270 T 23-04-2016 RPE_RS00085 aa8cf26e54004c22ea770ac17d6854c8 548 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 81 542 5.2E-219 T 23-04-2016 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS00085 aa8cf26e54004c22ea770ac17d6854c8 548 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 87 512 6.0E-110 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS00085 aa8cf26e54004c22ea770ac17d6854c8 548 PANTHER PTHR10422 78 541 1.3E-270 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS00085 aa8cf26e54004c22ea770ac17d6854c8 548 Gene3D G3DSA:1.20.210.10 88 541 6.8E-64 T 23-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS22835 c9fbe63a963e6080f03ee450f5470ab9 366 Gene3D G3DSA:1.10.287.950 4 133 4.5E-22 T 23-04-2016 RPE_RS22835 c9fbe63a963e6080f03ee450f5470ab9 366 SUPERFAMILY SSF58104 5 118 1.57E-20 T 23-04-2016 RPE_RS22835 c9fbe63a963e6080f03ee450f5470ab9 366 PANTHER PTHR32089 24 137 1.9E-15 T 23-04-2016 RPE_RS22835 c9fbe63a963e6080f03ee450f5470ab9 366 Gene3D G3DSA:3.30.450.20 171 271 3.0E-6 T 23-04-2016 RPE_RS22835 c9fbe63a963e6080f03ee450f5470ab9 366 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 25 136 2.7E-17 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS20515 52bb3fb1b61f3a23610ec632cd1a798c 705 PANTHER PTHR41533:SF1 119 654 1.5E-141 T 23-04-2016 RPE_RS20515 52bb3fb1b61f3a23610ec632cd1a798c 705 Pfam PF03734 L,D-transpeptidase catalytic domain 419 567 1.8E-27 T 23-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 RPE_RS20515 52bb3fb1b61f3a23610ec632cd1a798c 705 SUPERFAMILY SSF47090 332 388 1.08E-7 T 23-04-2016 IPR002477 Peptidoglycan binding-like RPE_RS20515 52bb3fb1b61f3a23610ec632cd1a798c 705 PANTHER PTHR41533 119 654 1.5E-141 T 23-04-2016 RPE_RS20515 52bb3fb1b61f3a23610ec632cd1a798c 705 Gene3D G3DSA:1.10.101.10 333 391 2.7E-7 T 23-04-2016 IPR002477 Peptidoglycan binding-like RPE_RS20515 52bb3fb1b61f3a23610ec632cd1a798c 705 Gene3D G3DSA:2.40.440.10 417 464 1.0E-8 T 23-04-2016 RPE_RS20515 52bb3fb1b61f3a23610ec632cd1a798c 705 Gene3D G3DSA:2.40.440.10 512 561 1.0E-8 T 23-04-2016 RPE_RS20515 52bb3fb1b61f3a23610ec632cd1a798c 705 SUPERFAMILY SSF141523 510 561 1.57E-17 T 23-04-2016 RPE_RS20515 52bb3fb1b61f3a23610ec632cd1a798c 705 SUPERFAMILY SSF141523 416 473 1.57E-17 T 23-04-2016 RPE_RS20515 52bb3fb1b61f3a23610ec632cd1a798c 705 Pfam PF01471 Putative peptidoglycan binding domain 342 385 1.2E-7 T 23-04-2016 IPR002477 Peptidoglycan binding-like RPE_RS23170 ffaa3991e65862e322f774fc4b8b4591 279 PANTHER PTHR30151:SF7 1 31 2.7E-125 T 23-04-2016 RPE_RS23170 ffaa3991e65862e322f774fc4b8b4591 279 PANTHER PTHR30151:SF7 50 275 2.7E-125 T 23-04-2016 RPE_RS23170 ffaa3991e65862e322f774fc4b8b4591 279 SUPERFAMILY SSF161098 83 269 2.35E-24 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS23170 ffaa3991e65862e322f774fc4b8b4591 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 270 8.7E-19 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS23170 ffaa3991e65862e322f774fc4b8b4591 279 TIGRFAM TIGR01183 ntrB: nitrate ABC transporter, permease protein 72 269 6.8E-69 T 23-04-2016 IPR005889 Nitrate transport permease GO:0015112|GO:0015706|GO:0016021 RPE_RS23170 ffaa3991e65862e322f774fc4b8b4591 279 Gene3D G3DSA:1.10.3720.10 80 273 1.1E-15 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS23170 ffaa3991e65862e322f774fc4b8b4591 279 PANTHER PTHR30151 1 31 2.7E-125 T 23-04-2016 RPE_RS23170 ffaa3991e65862e322f774fc4b8b4591 279 PANTHER PTHR30151 50 275 2.7E-125 T 23-04-2016 RPE_RS22485 ac105ee4952e1016657ca97ee3d3fed7 71 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 50 3.6E-15 T 23-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain RPE_RS22485 ac105ee4952e1016657ca97ee3d3fed7 71 Pfam PF09723 Zinc ribbon domain 1 38 5.0E-12 T 23-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain RPE_RS22485 ac105ee4952e1016657ca97ee3d3fed7 71 SMART SM00834 1 40 3.5E-14 T 23-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain RPE_RS10700 74d2f0666bdd4fe42e42b86adcbd4bc0 305 Pfam PF00005 ABC transporter 20 162 1.4E-32 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS10700 74d2f0666bdd4fe42e42b86adcbd4bc0 305 PANTHER PTHR24220 5 224 1.5E-112 T 23-04-2016 RPE_RS10700 74d2f0666bdd4fe42e42b86adcbd4bc0 305 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS10700 74d2f0666bdd4fe42e42b86adcbd4bc0 305 PANTHER PTHR24220:SF305 5 224 1.5E-112 T 23-04-2016 RPE_RS10700 74d2f0666bdd4fe42e42b86adcbd4bc0 305 SUPERFAMILY SSF52540 2 226 1.64E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10700 74d2f0666bdd4fe42e42b86adcbd4bc0 305 SMART SM00382 29 210 6.0E-16 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS10700 74d2f0666bdd4fe42e42b86adcbd4bc0 305 Gene3D G3DSA:3.40.50.300 1 227 8.1E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS08700 f87ff051242d6727cf3a1d7ef9da94ac 277 Gene3D G3DSA:3.40.50.620 155 276 1.2E-15 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS08700 f87ff051242d6727cf3a1d7ef9da94ac 277 PRINTS PR01438 Universal stress protein signature 154 172 1.9E-6 T 23-04-2016 IPR006015 Universal stress protein A RPE_RS08700 f87ff051242d6727cf3a1d7ef9da94ac 277 PRINTS PR01438 Universal stress protein signature 255 277 1.9E-6 T 23-04-2016 IPR006015 Universal stress protein A RPE_RS08700 f87ff051242d6727cf3a1d7ef9da94ac 277 PRINTS PR01438 Universal stress protein signature 237 249 1.9E-6 T 23-04-2016 IPR006015 Universal stress protein A RPE_RS08700 f87ff051242d6727cf3a1d7ef9da94ac 277 SUPERFAMILY SSF52402 1 145 1.09E-6 T 23-04-2016 RPE_RS08700 f87ff051242d6727cf3a1d7ef9da94ac 277 Pfam PF00582 Universal stress protein family 155 275 7.9E-8 T 23-04-2016 IPR006016 UspA GO:0006950 RPE_RS08700 f87ff051242d6727cf3a1d7ef9da94ac 277 SUPERFAMILY SSF52402 154 277 3.68E-18 T 23-04-2016 RPE_RS08700 f87ff051242d6727cf3a1d7ef9da94ac 277 Gene3D G3DSA:3.40.50.620 1 88 0.001 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS19595 cffff1e6cd4e29ec2c209062ec6d4062 260 PANTHER PTHR24319 1 254 4.3E-59 T 23-04-2016 RPE_RS19595 cffff1e6cd4e29ec2c209062ec6d4062 260 PANTHER PTHR24319:SF23 1 254 4.3E-59 T 23-04-2016 RPE_RS19595 cffff1e6cd4e29ec2c209062ec6d4062 260 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 254 7.2E-38 T 23-04-2016 RPE_RS19595 cffff1e6cd4e29ec2c209062ec6d4062 260 Gene3D G3DSA:3.40.50.720 5 255 1.6E-59 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS19595 cffff1e6cd4e29ec2c209062ec6d4062 260 SUPERFAMILY SSF51735 6 255 9.45E-61 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS19595 cffff1e6cd4e29ec2c209062ec6d4062 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 1.0E-22 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS19595 cffff1e6cd4e29ec2c209062ec6d4062 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 1.0E-22 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS19595 cffff1e6cd4e29ec2c209062ec6d4062 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 1.0E-22 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS19595 cffff1e6cd4e29ec2c209062ec6d4062 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 1.0E-22 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS19595 cffff1e6cd4e29ec2c209062ec6d4062 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.0E-22 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS19595 cffff1e6cd4e29ec2c209062ec6d4062 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 1.0E-22 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22710 358f5d9776247976a62e6c6614f75449 59 PRINTS PR00673 Light harvesting protein A chain signature 5 12 5.8E-12 T 23-04-2016 IPR018332 Antenna complex, alpha subunit RPE_RS22710 358f5d9776247976a62e6c6614f75449 59 PRINTS PR00673 Light harvesting protein A chain signature 31 42 5.8E-12 T 23-04-2016 IPR018332 Antenna complex, alpha subunit RPE_RS22710 358f5d9776247976a62e6c6614f75449 59 PRINTS PR00673 Light harvesting protein A chain signature 12 31 5.8E-12 T 23-04-2016 IPR018332 Antenna complex, alpha subunit RPE_RS22710 358f5d9776247976a62e6c6614f75449 59 SUPERFAMILY SSF56918 1 50 7.59E-21 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS22710 358f5d9776247976a62e6c6614f75449 59 Gene3D G3DSA:4.10.220.20 1 52 1.5E-30 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS22710 358f5d9776247976a62e6c6614f75449 59 ProSitePatterns PS00968 Antenna complexes alpha subunits signature. 25 41 - T 23-04-2016 IPR002361 Antenna complex, alpha subunit conserved site GO:0016021|GO:0019684|GO:0019866|GO:0030077|GO:0045156 RPE_RS22710 358f5d9776247976a62e6c6614f75449 59 Pfam PF00556 Antenna complex alpha/beta subunit 6 41 3.6E-14 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS08390 b6c1d0eadc34fa8d40f0a841cd06b1fa 258 Pfam PF00440 Bacterial regulatory proteins, tetR family 72 118 1.2E-18 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS08390 b6c1d0eadc34fa8d40f0a841cd06b1fa 258 Pfam PF16859 Bacterial transcriptional repressor C-terminal 139 243 8.7E-8 T 23-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RPE_RS08390 b6c1d0eadc34fa8d40f0a841cd06b1fa 258 SUPERFAMILY SSF48498 139 252 3.11E-14 T 23-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RPE_RS08390 b6c1d0eadc34fa8d40f0a841cd06b1fa 258 Gene3D G3DSA:1.10.357.10 57 251 1.1E-39 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RPE_RS08390 b6c1d0eadc34fa8d40f0a841cd06b1fa 258 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 72 85 2.5E-10 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS08390 b6c1d0eadc34fa8d40f0a841cd06b1fa 258 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 93 116 2.5E-10 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS08390 b6c1d0eadc34fa8d40f0a841cd06b1fa 258 PANTHER PTHR30055:SF27 56 257 1.3E-31 T 23-04-2016 RPE_RS08390 b6c1d0eadc34fa8d40f0a841cd06b1fa 258 PANTHER PTHR30055 56 257 1.3E-31 T 23-04-2016 RPE_RS08390 b6c1d0eadc34fa8d40f0a841cd06b1fa 258 SUPERFAMILY SSF46689 60 140 7.48E-20 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS13615 60d2168e60a13ca06c109c9e98ff1097 56 ProSitePatterns PS00969 Antenna complexes beta subunits signature. 22 53 - T 23-04-2016 IPR023623 Antenna complex, beta subunit, conserved site RPE_RS13615 60d2168e60a13ca06c109c9e98ff1097 56 SUPERFAMILY SSF56918 12 55 1.15E-14 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS13615 60d2168e60a13ca06c109c9e98ff1097 56 Pfam PF00556 Antenna complex alpha/beta subunit 22 55 1.4E-8 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS13615 60d2168e60a13ca06c109c9e98ff1097 56 Gene3D G3DSA:1.20.5.250 16 55 8.1E-21 T 23-04-2016 RPE_RS13615 60d2168e60a13ca06c109c9e98ff1097 56 PRINTS PR00674 Light harvesting protein B chain signature 17 37 1.9E-13 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS13615 60d2168e60a13ca06c109c9e98ff1097 56 PRINTS PR00674 Light harvesting protein B chain signature 37 54 1.9E-13 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS14015 73c99ba69b6b32f60586bdf6a25fbc07 1179 Pfam PF00270 DEAD/DEAH box helicase 625 785 8.4E-15 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RPE_RS14015 73c99ba69b6b32f60586bdf6a25fbc07 1179 Pfam PF02559 CarD-like/TRCF domain 501 594 6.0E-25 T 23-04-2016 IPR003711 CarD-like/TRCF domain RPE_RS14015 73c99ba69b6b32f60586bdf6a25fbc07 1179 SMART SM01058 500 596 5.6E-45 T 23-04-2016 IPR003711 CarD-like/TRCF domain RPE_RS14015 73c99ba69b6b32f60586bdf6a25fbc07 1179 SUPERFAMILY SSF52540 11 363 1.83E-84 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14015 73c99ba69b6b32f60586bdf6a25fbc07 1179 SMART SM00490 846 930 1.6E-18 T 23-04-2016 IPR001650 Helicase, C-terminal RPE_RS14015 73c99ba69b6b32f60586bdf6a25fbc07 1179 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 36 1160 28.064 T 23-04-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 RPE_RS14015 73c99ba69b6b32f60586bdf6a25fbc07 1179 SUPERFAMILY SSF141259 492 568 2.62E-21 T 23-04-2016 IPR003711 CarD-like/TRCF domain RPE_RS14015 73c99ba69b6b32f60586bdf6a25fbc07 1179 SUPERFAMILY SSF52540 370 490 4.3E-21 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14015 73c99ba69b6b32f60586bdf6a25fbc07 1179 SMART SM00982 1026 1126 4.8E-43 T 23-04-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 RPE_RS14015 73c99ba69b6b32f60586bdf6a25fbc07 1179 PANTHER PTHR14025 408 1160 0.0 T 23-04-2016 RPE_RS14015 73c99ba69b6b32f60586bdf6a25fbc07 1179 Pfam PF00271 Helicase conserved C-terminal domain 824 929 1.6E-18 T 23-04-2016 IPR001650 Helicase, C-terminal RPE_RS14015 73c99ba69b6b32f60586bdf6a25fbc07 1179 Gene3D G3DSA:3.30.2060.10 142 218 2.6E-14 T 23-04-2016 RPE_RS14015 73c99ba69b6b32f60586bdf6a25fbc07 1179 Gene3D G3DSA:3.40.50.300 608 806 3.2E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14015 73c99ba69b6b32f60586bdf6a25fbc07 1179 SUPERFAMILY SSF52540 803 1010 1.25E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14015 73c99ba69b6b32f60586bdf6a25fbc07 1179 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 159 1099 0.0 T 23-04-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 RPE_RS14015 73c99ba69b6b32f60586bdf6a25fbc07 1179 Gene3D G3DSA:3.40.50.300 809 983 5.4E-32 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14015 73c99ba69b6b32f60586bdf6a25fbc07 1179 SUPERFAMILY SSF52540 545 803 2.23E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14015 73c99ba69b6b32f60586bdf6a25fbc07 1179 PANTHER PTHR14025:SF21 408 1160 0.0 T 23-04-2016 RPE_RS14015 73c99ba69b6b32f60586bdf6a25fbc07 1179 SMART SM00487 620 810 8.6E-32 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RPE_RS14015 73c99ba69b6b32f60586bdf6a25fbc07 1179 SUPERFAMILY SSF143517 1017 1166 2.88E-41 T 23-04-2016 RPE_RS14015 73c99ba69b6b32f60586bdf6a25fbc07 1179 Pfam PF03461 TRCF domain 1028 1120 8.8E-26 T 23-04-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 RPE_RS06520 eb75f7dde278c726202cc192c4747ce4 47 PIRSF PIRSF002900 1 47 1.0E-17 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS06520 eb75f7dde278c726202cc192c4747ce4 47 Gene3D G3DSA:1.20.5.250 7 46 1.4E-21 T 23-04-2016 RPE_RS06520 eb75f7dde278c726202cc192c4747ce4 47 Pfam PF00556 Antenna complex alpha/beta subunit 13 46 6.1E-10 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS06520 eb75f7dde278c726202cc192c4747ce4 47 ProSitePatterns PS00969 Antenna complexes beta subunits signature. 13 44 - T 23-04-2016 IPR023623 Antenna complex, beta subunit, conserved site RPE_RS06520 eb75f7dde278c726202cc192c4747ce4 47 PRINTS PR00674 Light harvesting protein B chain signature 28 45 1.3E-13 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS06520 eb75f7dde278c726202cc192c4747ce4 47 PRINTS PR00674 Light harvesting protein B chain signature 8 28 1.3E-13 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS06520 eb75f7dde278c726202cc192c4747ce4 47 SUPERFAMILY SSF56918 3 46 4.71E-15 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS05500 69f6310691a801fdd234d1bbd13b9547 275 SUPERFAMILY SSF52540 92 268 4.15E-32 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS05500 69f6310691a801fdd234d1bbd13b9547 275 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 94 271 1.3E-12 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain RPE_RS05500 69f6310691a801fdd234d1bbd13b9547 275 Gene3D G3DSA:3.40.50.300 89 268 2.5E-30 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS05500 69f6310691a801fdd234d1bbd13b9547 275 PANTHER PTHR32309 74 268 2.6E-21 T 23-04-2016 RPE_RS05500 69f6310691a801fdd234d1bbd13b9547 275 PANTHER PTHR32309:SF14 74 268 2.6E-21 T 23-04-2016 RPE_RS20835 7d8c85a2702045909e500d56e923ed57 379 PANTHER PTHR10578:SF76 1 377 7.5E-227 T 23-04-2016 RPE_RS20835 7d8c85a2702045909e500d56e923ed57 379 PANTHER PTHR10578 1 377 7.5E-227 T 23-04-2016 RPE_RS20835 7d8c85a2702045909e500d56e923ed57 379 Gene3D G3DSA:3.20.20.70 4 377 1.6E-135 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS20835 7d8c85a2702045909e500d56e923ed57 379 SUPERFAMILY SSF51395 4 376 1.04E-100 T 23-04-2016 RPE_RS20835 7d8c85a2702045909e500d56e923ed57 379 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 275 281 - T 23-04-2016 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 RPE_RS20835 7d8c85a2702045909e500d56e923ed57 379 Pfam PF01070 FMN-dependent dehydrogenase 15 378 1.7E-132 T 23-04-2016 IPR000262 FMN-dependent dehydrogenase GO:0016491 RPE_RS20835 7d8c85a2702045909e500d56e923ed57 379 PIRSF PIRSF000138 1 379 1.6E-126 T 23-04-2016 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 RPE_RS01525 9dfba50fd9dc96e6127681c998165840 245 SUPERFAMILY SSF52540 19 237 1.56E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01525 9dfba50fd9dc96e6127681c998165840 245 SMART SM00382 46 239 6.9E-15 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS01525 9dfba50fd9dc96e6127681c998165840 245 Gene3D G3DSA:3.40.50.300 18 235 1.9E-69 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01525 9dfba50fd9dc96e6127681c998165840 245 PANTHER PTHR24220 19 233 1.5E-103 T 23-04-2016 RPE_RS01525 9dfba50fd9dc96e6127681c998165840 245 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS01525 9dfba50fd9dc96e6127681c998165840 245 PANTHER PTHR24220:SF509 19 233 1.5E-103 T 23-04-2016 RPE_RS01525 9dfba50fd9dc96e6127681c998165840 245 Pfam PF00005 ABC transporter 37 183 2.8E-34 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS09710 6f1c1496d7f70064eac89291caf5db69 167 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 1 139 31.731 T 23-04-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 RPE_RS09710 6f1c1496d7f70064eac89291caf5db69 167 Gene3D G3DSA:2.40.50.140 25 123 4.0E-35 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS09710 6f1c1496d7f70064eac89291caf5db69 167 SUPERFAMILY SSF82093 29 135 6.15E-37 T 23-04-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 RPE_RS09710 6f1c1496d7f70064eac89291caf5db69 167 Pfam PF03100 CcmE 3 129 6.5E-44 T 23-04-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 RPE_RS09710 6f1c1496d7f70064eac89291caf5db69 167 PANTHER PTHR34128:SF1 3 162 1.5E-57 T 23-04-2016 RPE_RS09710 6f1c1496d7f70064eac89291caf5db69 167 PANTHER PTHR34128 3 162 1.5E-57 T 23-04-2016 RPE_RS14945 dc552df201b7c140e28d67187acfc61f 455 Pfam PF01551 Peptidase family M23 347 441 4.1E-34 T 23-04-2016 IPR016047 Peptidase M23 RPE_RS14945 dc552df201b7c140e28d67187acfc61f 455 Gene3D G3DSA:2.70.70.10 310 446 2.9E-49 T 23-04-2016 RPE_RS14945 dc552df201b7c140e28d67187acfc61f 455 PANTHER PTHR21666 296 450 5.1E-47 T 23-04-2016 RPE_RS14945 dc552df201b7c140e28d67187acfc61f 455 SUPERFAMILY SSF51261 315 445 1.1E-53 T 23-04-2016 IPR011055 Duplicated hybrid motif RPE_RS11840 0e022f2ff768150281e1defd4032c6fc 259 Gene3D G3DSA:3.40.50.10330 29 115 5.9E-18 T 23-04-2016 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 RPE_RS11840 0e022f2ff768150281e1defd4032c6fc 259 Pfam PF01513 ATP-NAD kinase 18 218 4.2E-21 T 23-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 RPE_RS11840 0e022f2ff768150281e1defd4032c6fc 259 SUPERFAMILY SSF111331 31 245 7.33E-58 T 23-04-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain RPE_RS11840 0e022f2ff768150281e1defd4032c6fc 259 Gene3D G3DSA:2.60.200.30 116 229 1.6E-32 T 23-04-2016 IPR017437 ATP-NAD kinase, PpnK-type, all-beta GO:0003951|GO:0008152|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 RPE_RS11840 0e022f2ff768150281e1defd4032c6fc 259 Hamap MF_00361 NAD kinase [nadK]. 8 259 21.727 T 23-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 RPE_RS11840 0e022f2ff768150281e1defd4032c6fc 259 PANTHER PTHR20275:SF7 6 259 3.6E-94 T 23-04-2016 RPE_RS11840 0e022f2ff768150281e1defd4032c6fc 259 PANTHER PTHR20275 6 259 3.6E-94 T 23-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 RPE_RS15590 9a7284e04aa924f157987d72bd4c9386 266 SMART SM00382 39 237 1.3E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS15590 9a7284e04aa924f157987d72bd4c9386 266 PANTHER PTHR24220 16 266 3.7E-131 T 23-04-2016 RPE_RS15590 9a7284e04aa924f157987d72bd4c9386 266 PIRSF PIRSF037116 4 266 1.8E-138 T 23-04-2016 IPR012700 Phosphonate C-P lyase system, PhnK RPE_RS15590 9a7284e04aa924f157987d72bd4c9386 266 Pfam PF00005 ABC transporter 31 187 5.2E-28 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS15590 9a7284e04aa924f157987d72bd4c9386 266 SUPERFAMILY SSF52540 8 261 1.41E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15590 9a7284e04aa924f157987d72bd4c9386 266 TIGRFAM TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK 12 264 2.9E-113 T 23-04-2016 IPR012700 Phosphonate C-P lyase system, PhnK RPE_RS15590 9a7284e04aa924f157987d72bd4c9386 266 Gene3D G3DSA:3.40.50.300 10 262 2.3E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15590 9a7284e04aa924f157987d72bd4c9386 266 PANTHER PTHR24220:SF554 16 266 3.7E-131 T 23-04-2016 RPE_RS15590 9a7284e04aa924f157987d72bd4c9386 266 ProSitePatterns PS00211 ABC transporters family signature. 160 174 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS22825 027d72b48a648726119c1d75a0977c70 784 Gene3D G3DSA:3.30.365.10 374 463 8.3E-68 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS22825 027d72b48a648726119c1d75a0977c70 784 Gene3D G3DSA:3.30.365.10 633 778 8.3E-68 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS22825 027d72b48a648726119c1d75a0977c70 784 PANTHER PTHR11908:SF85 602 784 0.0 T 23-04-2016 RPE_RS22825 027d72b48a648726119c1d75a0977c70 784 PANTHER PTHR11908:SF85 4 585 0.0 T 23-04-2016 RPE_RS22825 027d72b48a648726119c1d75a0977c70 784 PANTHER PTHR11908 602 784 0.0 T 23-04-2016 RPE_RS22825 027d72b48a648726119c1d75a0977c70 784 PANTHER PTHR11908 4 585 0.0 T 23-04-2016 RPE_RS22825 027d72b48a648726119c1d75a0977c70 784 Gene3D G3DSA:3.30.365.10 187 293 1.2E-33 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS22825 027d72b48a648726119c1d75a0977c70 784 Gene3D G3DSA:3.30.365.10 129 186 6.0E-46 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS22825 027d72b48a648726119c1d75a0977c70 784 Gene3D G3DSA:3.30.365.10 295 371 6.0E-46 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS22825 027d72b48a648726119c1d75a0977c70 784 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 20 139 9.2E-30 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RPE_RS22825 027d72b48a648726119c1d75a0977c70 784 SUPERFAMILY SSF56003 132 778 4.32E-205 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS22825 027d72b48a648726119c1d75a0977c70 784 SUPERFAMILY SSF54665 5 162 2.75E-47 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RPE_RS22825 027d72b48a648726119c1d75a0977c70 784 SMART SM01008 20 140 5.0E-53 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RPE_RS22825 027d72b48a648726119c1d75a0977c70 784 Gene3D G3DSA:3.30.365.10 464 632 7.9E-52 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS22825 027d72b48a648726119c1d75a0977c70 784 Gene3D G3DSA:3.90.1170.50 4 128 8.3E-41 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RPE_RS22825 027d72b48a648726119c1d75a0977c70 784 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 156 718 1.3E-176 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS11340 ec9904ec21aae42db5a37b8cdd26caf5 476 Pfam PF00171 Aldehyde dehydrogenase family 13 470 7.5E-151 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RPE_RS11340 ec9904ec21aae42db5a37b8cdd26caf5 476 PANTHER PTHR11699:SF214 1 471 0.0 T 23-04-2016 RPE_RS11340 ec9904ec21aae42db5a37b8cdd26caf5 476 PANTHER PTHR11699 1 471 0.0 T 23-04-2016 RPE_RS11340 ec9904ec21aae42db5a37b8cdd26caf5 476 SUPERFAMILY SSF53720 3 470 4.84E-151 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RPE_RS11340 ec9904ec21aae42db5a37b8cdd26caf5 476 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 272 283 - T 23-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 RPE_RS11340 ec9904ec21aae42db5a37b8cdd26caf5 476 Gene3D G3DSA:3.40.605.10 4 257 1.4E-84 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RPE_RS11340 ec9904ec21aae42db5a37b8cdd26caf5 476 Gene3D G3DSA:3.40.309.10 258 445 1.1E-61 T 23-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RPE_RS04520 fec89f441862c446bdb0c7787fd37622 394 SUPERFAMILY SSF53383 7 374 3.97E-96 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS04520 fec89f441862c446bdb0c7787fd37622 394 PIRSF PIRSF000524 1 394 5.7E-126 T 23-04-2016 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 RPE_RS04520 fec89f441862c446bdb0c7787fd37622 394 PANTHER PTHR21152 1 393 1.6E-118 T 23-04-2016 RPE_RS04520 fec89f441862c446bdb0c7787fd37622 394 Gene3D G3DSA:3.40.640.10 19 261 4.4E-52 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS04520 fec89f441862c446bdb0c7787fd37622 394 Pfam PF00266 Aminotransferase class-V 10 336 2.5E-32 T 23-04-2016 IPR000192 Aminotransferase class V domain RPE_RS04520 fec89f441862c446bdb0c7787fd37622 394 PANTHER PTHR21152:SF21 1 393 1.6E-118 T 23-04-2016 RPE_RS04520 fec89f441862c446bdb0c7787fd37622 394 Gene3D G3DSA:3.90.1150.10 262 375 8.0E-24 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS20495 cd9ae54bf7f3e2139af0d6746355af38 74 SMART SM00966 6 52 2.2E-9 T 23-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 RPE_RS20495 cd9ae54bf7f3e2139af0d6746355af38 74 SUPERFAMILY SSF89447 1 64 2.96E-14 T 23-04-2016 RPE_RS20495 cd9ae54bf7f3e2139af0d6746355af38 74 TIGRFAM TIGR02609 doc_partner: putative addiction module antidote 4 74 4.0E-20 T 23-04-2016 IPR013432 Putative addiction module antidote RPE_RS20495 cd9ae54bf7f3e2139af0d6746355af38 74 Gene3D G3DSA:2.10.260.10 1 46 9.5E-13 T 23-04-2016 RPE_RS20495 cd9ae54bf7f3e2139af0d6746355af38 74 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 6 47 6.3E-6 T 23-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 RPE_RS21710 3aa715f70fd09e4de89d6a194bda0ac9 400 Hamap MF_00296 Homoserine O-acetyltransferase [metX]. 20 388 48.086 T 23-04-2016 IPR008220 Homoserine acetyltransferase GO:0004414|GO:0005737|GO:0009086 KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344|UniPathway: UPA00051 RPE_RS21710 3aa715f70fd09e4de89d6a194bda0ac9 400 PIRSF PIRSF000443 8 394 3.3E-141 T 23-04-2016 IPR008220 Homoserine acetyltransferase GO:0004414|GO:0005737|GO:0009086 KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344|UniPathway: UPA00051 RPE_RS21710 3aa715f70fd09e4de89d6a194bda0ac9 400 Gene3D G3DSA:3.40.50.1820 253 387 4.1E-36 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS21710 3aa715f70fd09e4de89d6a194bda0ac9 400 Gene3D G3DSA:3.40.50.1820 44 220 4.1E-36 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS21710 3aa715f70fd09e4de89d6a194bda0ac9 400 Pfam PF00561 alpha/beta hydrolase fold 64 373 1.4E-29 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS21710 3aa715f70fd09e4de89d6a194bda0ac9 400 PANTHER PTHR32268 34 386 1.9E-182 T 23-04-2016 RPE_RS21710 3aa715f70fd09e4de89d6a194bda0ac9 400 SUPERFAMILY SSF53474 34 386 1.06E-103 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS21710 3aa715f70fd09e4de89d6a194bda0ac9 400 TIGRFAM TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase 34 386 1.2E-146 T 23-04-2016 IPR008220 Homoserine acetyltransferase GO:0004414|GO:0005737|GO:0009086 KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344|UniPathway: UPA00051 RPE_RS21710 3aa715f70fd09e4de89d6a194bda0ac9 400 PANTHER PTHR32268:SF11 34 386 1.9E-182 T 23-04-2016 RPE_RS21630 2756df475a1344a68914738a2474b6e3 365 SUPERFAMILY SSF53756 2 345 1.73E-51 T 23-04-2016 RPE_RS21630 2756df475a1344a68914738a2474b6e3 365 PANTHER PTHR12526:SF220 8 338 9.1E-27 T 23-04-2016 RPE_RS21630 2756df475a1344a68914738a2474b6e3 365 Pfam PF00534 Glycosyl transferases group 1 184 325 5.4E-20 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 RPE_RS21630 2756df475a1344a68914738a2474b6e3 365 Gene3D G3DSA:3.40.50.2000 175 333 8.1E-18 T 23-04-2016 RPE_RS21630 2756df475a1344a68914738a2474b6e3 365 PANTHER PTHR12526 8 338 9.1E-27 T 23-04-2016 RPE_RS21630 2756df475a1344a68914738a2474b6e3 365 Pfam PF13439 Glycosyltransferase Family 4 14 163 5.1E-9 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RPE_RS11080 81a88280a264d9fd20321a5ff61587d1 334 PANTHER PTHR33376:SF7 1 333 5.9E-157 T 23-04-2016 RPE_RS11080 81a88280a264d9fd20321a5ff61587d1 334 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 30 311 1.6E-106 T 23-04-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 RPE_RS11080 81a88280a264d9fd20321a5ff61587d1 334 PANTHER PTHR33376 1 333 5.9E-157 T 23-04-2016 RPE_RS11080 81a88280a264d9fd20321a5ff61587d1 334 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 30 286 1.1E-99 T 23-04-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 RPE_RS11080 81a88280a264d9fd20321a5ff61587d1 334 PIRSF PIRSF006470 1 329 5.6E-131 T 23-04-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 RPE_RS19395 522186a627cd4ed103dfe388014b16ed 395 Gene3D G3DSA:1.10.10.60 334 381 5.9E-7 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS19395 522186a627cd4ed103dfe388014b16ed 395 Gene3D G3DSA:1.10.10.60 255 273 5.9E-7 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS19395 522186a627cd4ed103dfe388014b16ed 395 PANTHER PTHR32071 23 394 5.9E-133 T 23-04-2016 RPE_RS19395 522186a627cd4ed103dfe388014b16ed 395 Gene3D G3DSA:3.40.50.300 28 201 5.1E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS19395 522186a627cd4ed103dfe388014b16ed 395 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 371 391 1.2E-10 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RPE_RS19395 522186a627cd4ed103dfe388014b16ed 395 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 354 371 1.2E-10 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RPE_RS19395 522186a627cd4ed103dfe388014b16ed 395 Pfam PF00158 Sigma-54 interaction domain 29 195 1.9E-70 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RPE_RS19395 522186a627cd4ed103dfe388014b16ed 395 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 115 130 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RPE_RS19395 522186a627cd4ed103dfe388014b16ed 395 SUPERFAMILY SSF52540 29 269 1.28E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS19395 522186a627cd4ed103dfe388014b16ed 395 Gene3D G3DSA:1.10.8.60 202 254 1.1E-17 T 23-04-2016 RPE_RS19395 522186a627cd4ed103dfe388014b16ed 395 Pfam PF02954 Bacterial regulatory protein, Fis family 355 388 5.9E-10 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RPE_RS19395 522186a627cd4ed103dfe388014b16ed 395 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 241 250 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site RPE_RS19395 522186a627cd4ed103dfe388014b16ed 395 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 53 66 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RPE_RS19395 522186a627cd4ed103dfe388014b16ed 395 SMART SM00382 49 192 4.0E-16 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS20095 2ab2bc4c8d7e5f03c4a5aeef331e319d 813 Gene3D G3DSA:3.40.50.300 639 705 3.1E-18 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS20095 2ab2bc4c8d7e5f03c4a5aeef331e319d 813 Gene3D G3DSA:3.40.50.300 416 550 3.1E-18 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS20095 2ab2bc4c8d7e5f03c4a5aeef331e319d 813 SUPERFAMILY SSF52540 399 748 2.53E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS20095 2ab2bc4c8d7e5f03c4a5aeef331e319d 813 SMART SM00382 441 704 9.6E-6 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS20095 2ab2bc4c8d7e5f03c4a5aeef331e319d 813 Pfam PF03135 CagE, TrbE, VirB family, component of type IV transporter system 182 389 1.1E-11 T 23-04-2016 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain GO:0005524 RPE_RS19245 150538a3d7e5a4eab27ae0b677f96e00 503 SMART SM00382 24 319 1.9E-4 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS19245 150538a3d7e5a4eab27ae0b677f96e00 503 SUPERFAMILY SSF52540 5 247 6.64E-27 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS19245 150538a3d7e5a4eab27ae0b677f96e00 503 Pfam PF01935 Domain of unknown function DUF87 7 79 1.8E-7 T 23-04-2016 IPR002789 Helicase HerA, central domain RPE_RS19245 150538a3d7e5a4eab27ae0b677f96e00 503 Gene3D G3DSA:3.40.50.300 15 253 7.8E-31 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS19245 150538a3d7e5a4eab27ae0b677f96e00 503 PIRSF PIRSF034081 1 499 1.4E-253 T 23-04-2016 IPR014588 ATPase, Atu1862 type, predicted RPE_RS15280 7024dc768316f575f9dab94bfc84409f 318 Pfam PF01609 Transposase DDE domain 139 310 2.7E-23 T 23-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 RPE_RS15280 7024dc768316f575f9dab94bfc84409f 318 Pfam PF05598 Transposase domain (DUF772) 50 123 4.0E-26 T 23-04-2016 IPR008490 Transposase InsH, N-terminal RPE_RS15280 7024dc768316f575f9dab94bfc84409f 318 PANTHER PTHR35604 8 313 2.1E-45 T 23-04-2016 RPE_RS19015 680de98d02e63b081593f7ec9c519598 630 Gene3D G3DSA:3.40.50.980 57 234 7.9E-22 T 23-04-2016 RPE_RS19015 680de98d02e63b081593f7ec9c519598 630 Gene3D G3DSA:3.40.50.980 235 409 2.8E-19 T 23-04-2016 RPE_RS19015 680de98d02e63b081593f7ec9c519598 630 PANTHER PTHR24096:SF252 1 623 3.1E-276 T 23-04-2016 RPE_RS19015 680de98d02e63b081593f7ec9c519598 630 Gene3D G3DSA:2.30.38.10 410 463 2.2E-12 T 23-04-2016 RPE_RS19015 680de98d02e63b081593f7ec9c519598 630 SUPERFAMILY SSF56801 47 619 7.33E-82 T 23-04-2016 RPE_RS19015 680de98d02e63b081593f7ec9c519598 630 Pfam PF00501 AMP-binding enzyme 64 471 4.0E-57 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS19015 680de98d02e63b081593f7ec9c519598 630 ProSitePatterns PS00455 Putative AMP-binding domain signature. 230 241 - T 23-04-2016 IPR020845 AMP-binding, conserved site RPE_RS19015 680de98d02e63b081593f7ec9c519598 630 PANTHER PTHR24096 1 623 3.1E-276 T 23-04-2016 RPE_RS06730 504ba139ba947350f8d9c70748688c66 297 Pfam PF01040 UbiA prenyltransferase family 45 266 1.9E-35 T 23-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 RPE_RS06730 504ba139ba947350f8d9c70748688c66 297 PANTHER PTHR11048 15 291 3.2E-67 T 23-04-2016 RPE_RS06730 504ba139ba947350f8d9c70748688c66 297 TIGRFAM TIGR01476 chlor_syn_BchG: bacteriochlorophyll/chlorophyll synthetase 13 291 3.7E-97 T 23-04-2016 IPR006372 Bacteriochlorophyll/chlorophyll synthetase RPE_RS06730 504ba139ba947350f8d9c70748688c66 297 PANTHER PTHR11048:SF32 15 291 3.2E-67 T 23-04-2016 RPE_RS08335 ec3923d7c0c9258c5c3c1c747a07ed02 151 Pfam PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) 7 147 6.9E-39 T 23-04-2016 IPR010419 Carbon monoxide dehydrogenase subunit G RPE_RS08335 ec3923d7c0c9258c5c3c1c747a07ed02 151 SUPERFAMILY SSF55961 3 147 8.06E-40 T 23-04-2016 RPE_RS08335 ec3923d7c0c9258c5c3c1c747a07ed02 151 Gene3D G3DSA:3.30.530.20 3 148 1.8E-57 T 23-04-2016 IPR023393 START-like domain RPE_RS08335 ec3923d7c0c9258c5c3c1c747a07ed02 151 PANTHER PTHR38588:SF1 4 151 8.8E-43 T 23-04-2016 RPE_RS08335 ec3923d7c0c9258c5c3c1c747a07ed02 151 PANTHER PTHR38588 4 151 8.8E-43 T 23-04-2016 RPE_RS12880 60d628cdc1f2dcb33f46da5121a2f212 474 PANTHER PTHR11451 3 330 3.1E-89 T 23-04-2016 RPE_RS12880 60d628cdc1f2dcb33f46da5121a2f212 474 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 11 22 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS12880 60d628cdc1f2dcb33f46da5121a2f212 474 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 5 307 3.5E-92 T 23-04-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 RPE_RS12880 60d628cdc1f2dcb33f46da5121a2f212 474 SUPERFAMILY SSF52374 4 301 4.02E-105 T 23-04-2016 RPE_RS12880 60d628cdc1f2dcb33f46da5121a2f212 474 Gene3D G3DSA:1.10.1160.10 236 316 8.2E-32 T 23-04-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: REACT_71 RPE_RS12880 60d628cdc1f2dcb33f46da5121a2f212 474 PRINTS PR00987 Glutamyl-tRNA synthetase signature 22 33 9.8E-27 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RPE_RS12880 60d628cdc1f2dcb33f46da5121a2f212 474 PRINTS PR00987 Glutamyl-tRNA synthetase signature 198 206 9.8E-27 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RPE_RS12880 60d628cdc1f2dcb33f46da5121a2f212 474 PRINTS PR00987 Glutamyl-tRNA synthetase signature 8 20 9.8E-27 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RPE_RS12880 60d628cdc1f2dcb33f46da5121a2f212 474 PRINTS PR00987 Glutamyl-tRNA synthetase signature 37 50 9.8E-27 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RPE_RS12880 60d628cdc1f2dcb33f46da5121a2f212 474 PRINTS PR00987 Glutamyl-tRNA synthetase signature 182 192 9.8E-27 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RPE_RS12880 60d628cdc1f2dcb33f46da5121a2f212 474 PANTHER PTHR11451:SF41 3 330 3.1E-89 T 23-04-2016 RPE_RS12880 60d628cdc1f2dcb33f46da5121a2f212 474 Hamap MF_00022_B Glutamate--tRNA ligase [gltX]. 5 472 31.682 T 23-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RPE_RS12880 60d628cdc1f2dcb33f46da5121a2f212 474 Gene3D G3DSA:1.10.10.350 377 471 6.9E-32 T 23-04-2016 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RPE_RS12880 60d628cdc1f2dcb33f46da5121a2f212 474 Gene3D G3DSA:3.90.800.10 70 183 1.3E-29 T 23-04-2016 RPE_RS12880 60d628cdc1f2dcb33f46da5121a2f212 474 Gene3D G3DSA:3.40.50.620 184 233 7.5E-51 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS12880 60d628cdc1f2dcb33f46da5121a2f212 474 Gene3D G3DSA:3.40.50.620 5 69 7.5E-51 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS12880 60d628cdc1f2dcb33f46da5121a2f212 474 SUPERFAMILY SSF48163 302 469 6.67E-39 T 23-04-2016 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RPE_RS12880 60d628cdc1f2dcb33f46da5121a2f212 474 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 5 470 1.3E-150 T 23-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RPE_RS24530 748f607fc918d2153c5bdd1a95ce0bbe 374 PANTHER PTHR11496:SF76 3 373 4.5E-173 T 23-04-2016 RPE_RS24530 748f607fc918d2153c5bdd1a95ce0bbe 374 Gene3D G3DSA:1.20.1090.10 183 373 2.0E-43 T 23-04-2016 RPE_RS24530 748f607fc918d2153c5bdd1a95ce0bbe 374 Pfam PF00465 Iron-containing alcohol dehydrogenase 3 360 7.1E-79 T 23-04-2016 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 RPE_RS24530 748f607fc918d2153c5bdd1a95ce0bbe 374 PANTHER PTHR11496 3 373 4.5E-173 T 23-04-2016 RPE_RS24530 748f607fc918d2153c5bdd1a95ce0bbe 374 Gene3D G3DSA:3.40.50.1970 3 182 1.6E-31 T 23-04-2016 RPE_RS24530 748f607fc918d2153c5bdd1a95ce0bbe 374 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 259 279 - T 23-04-2016 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RPE_RS24530 748f607fc918d2153c5bdd1a95ce0bbe 374 SUPERFAMILY SSF56796 3 361 3.79E-87 T 23-04-2016 RPE_RS06955 ac1e76d0d40cebf3dfaa576ba053e3a7 300 PANTHER PTHR30193 1 297 4.3E-84 T 23-04-2016 RPE_RS06955 ac1e76d0d40cebf3dfaa576ba053e3a7 300 PANTHER PTHR30193:SF6 1 297 4.3E-84 T 23-04-2016 RPE_RS06955 ac1e76d0d40cebf3dfaa576ba053e3a7 300 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 281 5.3E-16 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS06955 ac1e76d0d40cebf3dfaa576ba053e3a7 300 SUPERFAMILY SSF161098 53 280 3.92E-45 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS06955 ac1e76d0d40cebf3dfaa576ba053e3a7 300 Gene3D G3DSA:1.10.3720.10 65 286 1.8E-43 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS10155 ce150574038dd7644df20e9c3beed14f 165 PRINTS PR01837 MgtC/SapB protein signature 14 33 1.5E-30 T 23-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RPE_RS10155 ce150574038dd7644df20e9c3beed14f 165 PRINTS PR01837 MgtC/SapB protein signature 63 85 1.5E-30 T 23-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RPE_RS10155 ce150574038dd7644df20e9c3beed14f 165 PRINTS PR01837 MgtC/SapB protein signature 92 116 1.5E-30 T 23-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RPE_RS10155 ce150574038dd7644df20e9c3beed14f 165 PRINTS PR01837 MgtC/SapB protein signature 33 51 1.5E-30 T 23-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RPE_RS10155 ce150574038dd7644df20e9c3beed14f 165 Pfam PF02308 MgtC family 11 138 1.7E-31 T 23-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RPE_RS10155 ce150574038dd7644df20e9c3beed14f 165 PANTHER PTHR33778 1 143 1.9E-44 T 23-04-2016 RPE_RS05530 2a887abae0f30df4e073da762bee4fd9 806 Gene3D G3DSA:1.25.40.10 537 788 1.8E-34 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS05530 2a887abae0f30df4e073da762bee4fd9 806 Pfam PF14559 Tetratricopeptide repeat 633 689 5.5E-9 T 23-04-2016 RPE_RS05530 2a887abae0f30df4e073da762bee4fd9 806 Pfam PF14559 Tetratricopeptide repeat 98 148 7.0E-6 T 23-04-2016 RPE_RS05530 2a887abae0f30df4e073da762bee4fd9 806 Pfam PF14559 Tetratricopeptide repeat 530 582 6.0E-10 T 23-04-2016 RPE_RS05530 2a887abae0f30df4e073da762bee4fd9 806 SUPERFAMILY SSF48452 524 787 6.54E-24 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS05530 2a887abae0f30df4e073da762bee4fd9 806 Gene3D G3DSA:1.25.40.10 217 357 8.0E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS05530 2a887abae0f30df4e073da762bee4fd9 806 Gene3D G3DSA:1.25.40.10 358 438 2.9E-11 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS05530 2a887abae0f30df4e073da762bee4fd9 806 SUPERFAMILY SSF48452 352 585 1.63E-17 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS05530 2a887abae0f30df4e073da762bee4fd9 806 SMART SM00028 758 791 150.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS05530 2a887abae0f30df4e073da762bee4fd9 806 SMART SM00028 141 174 26.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS05530 2a887abae0f30df4e073da762bee4fd9 806 SMART SM00028 416 452 120.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS05530 2a887abae0f30df4e073da762bee4fd9 806 SMART SM00028 552 585 110.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS05530 2a887abae0f30df4e073da762bee4fd9 806 SMART SM00028 586 619 42.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS05530 2a887abae0f30df4e073da762bee4fd9 806 SMART SM00028 73 106 480.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS05530 2a887abae0f30df4e073da762bee4fd9 806 SMART SM00028 107 140 1.5 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS05530 2a887abae0f30df4e073da762bee4fd9 806 SMART SM00028 518 551 320.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS05530 2a887abae0f30df4e073da762bee4fd9 806 SMART SM00028 654 687 320.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS05530 2a887abae0f30df4e073da762bee4fd9 806 SMART SM00028 348 381 170.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS05530 2a887abae0f30df4e073da762bee4fd9 806 SMART SM00028 39 72 23.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS05530 2a887abae0f30df4e073da762bee4fd9 806 SMART SM00028 620 653 0.69 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS05530 2a887abae0f30df4e073da762bee4fd9 806 SMART SM00028 382 415 140.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS05530 2a887abae0f30df4e073da762bee4fd9 806 Gene3D G3DSA:1.25.40.10 37 106 1.9E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS05530 2a887abae0f30df4e073da762bee4fd9 806 Pfam PF13432 Tetratricopeptide repeat 322 378 5.1E-4 T 23-04-2016 RPE_RS05530 2a887abae0f30df4e073da762bee4fd9 806 SUPERFAMILY SSF48452 39 177 1.64E-21 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS05530 2a887abae0f30df4e073da762bee4fd9 806 SUPERFAMILY SSF48452 260 300 1.64E-21 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS05530 2a887abae0f30df4e073da762bee4fd9 806 Gene3D G3DSA:1.25.40.10 107 190 1.7E-15 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS05530 2a887abae0f30df4e073da762bee4fd9 806 Gene3D G3DSA:1.25.40.10 439 536 2.3E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS05530 2a887abae0f30df4e073da762bee4fd9 806 PANTHER PTHR23083 38 174 9.8E-49 T 23-04-2016 RPE_RS05530 2a887abae0f30df4e073da762bee4fd9 806 PANTHER PTHR23083 347 493 9.8E-49 T 23-04-2016 RPE_RS05530 2a887abae0f30df4e073da762bee4fd9 806 PANTHER PTHR23083 729 787 9.8E-49 T 23-04-2016 RPE_RS05530 2a887abae0f30df4e073da762bee4fd9 806 PANTHER PTHR23083 528 658 9.8E-49 T 23-04-2016 RPE_RS14605 119883cba1152b41c9d456227ae638c1 145 SMART SM01323 19 102 1.4E-37 T 23-04-2016 IPR003849 Preprotein translocase YajC RPE_RS14605 119883cba1152b41c9d456227ae638c1 145 PRINTS PR01853 Bacterial YajC preprotein translocase signature 21 41 4.9E-17 T 23-04-2016 IPR003849 Preprotein translocase YajC RPE_RS14605 119883cba1152b41c9d456227ae638c1 145 PRINTS PR01853 Bacterial YajC preprotein translocase signature 59 77 4.9E-17 T 23-04-2016 IPR003849 Preprotein translocase YajC RPE_RS14605 119883cba1152b41c9d456227ae638c1 145 Pfam PF02699 Preprotein translocase subunit 22 99 3.9E-25 T 23-04-2016 IPR003849 Preprotein translocase YajC RPE_RS14605 119883cba1152b41c9d456227ae638c1 145 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 20 100 1.1E-24 T 23-04-2016 IPR003849 Preprotein translocase YajC RPE_RS14605 119883cba1152b41c9d456227ae638c1 145 PANTHER PTHR33909:SF1 1 126 2.8E-30 T 23-04-2016 RPE_RS14605 119883cba1152b41c9d456227ae638c1 145 PANTHER PTHR33909 1 126 2.8E-30 T 23-04-2016 RPE_RS19370 d901edd2c255a95e0e8de3ff103d31f6 122 PANTHER PTHR34583 1 115 7.9E-44 T 23-04-2016 RPE_RS19370 d901edd2c255a95e0e8de3ff103d31f6 122 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 9 104 1.9E-22 T 23-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 RPE_RS19370 d901edd2c255a95e0e8de3ff103d31f6 122 PANTHER PTHR34583:SF1 1 115 7.9E-44 T 23-04-2016 RPE_RS19140 2489bd2947a0c87006d5acc000fed692 514 SUPERFAMILY SSF56801 7 508 7.06E-128 T 23-04-2016 RPE_RS19140 2489bd2947a0c87006d5acc000fed692 514 Gene3D G3DSA:3.40.50.980 164 331 6.8E-36 T 23-04-2016 RPE_RS19140 2489bd2947a0c87006d5acc000fed692 514 PANTHER PTHR24096:SF106 1 506 3.3E-293 T 23-04-2016 RPE_RS19140 2489bd2947a0c87006d5acc000fed692 514 Pfam PF13193 AMP-binding enzyme C-terminal domain 417 495 1.2E-18 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RPE_RS19140 2489bd2947a0c87006d5acc000fed692 514 ProSitePatterns PS00455 Putative AMP-binding domain signature. 157 168 - T 23-04-2016 IPR020845 AMP-binding, conserved site RPE_RS19140 2489bd2947a0c87006d5acc000fed692 514 Gene3D G3DSA:2.30.38.10 332 402 1.6E-13 T 23-04-2016 RPE_RS19140 2489bd2947a0c87006d5acc000fed692 514 PANTHER PTHR24096 1 506 3.3E-293 T 23-04-2016 RPE_RS19140 2489bd2947a0c87006d5acc000fed692 514 Gene3D G3DSA:3.30.300.30 405 505 3.8E-28 T 23-04-2016 RPE_RS19140 2489bd2947a0c87006d5acc000fed692 514 Pfam PF00501 AMP-binding enzyme 7 408 3.0E-71 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS19140 2489bd2947a0c87006d5acc000fed692 514 Gene3D G3DSA:3.40.50.980 7 163 3.8E-34 T 23-04-2016 RPE_RS18090 32e5fdc0bdd615acd5c14f5fd809b3e1 654 Gene3D G3DSA:1.10.287.950 409 619 4.0E-43 T 23-04-2016 RPE_RS18090 32e5fdc0bdd615acd5c14f5fd809b3e1 654 PANTHER PTHR32089:SF40 372 651 1.4E-154 T 23-04-2016 RPE_RS18090 32e5fdc0bdd615acd5c14f5fd809b3e1 654 PANTHER PTHR32089:SF40 38 339 1.4E-154 T 23-04-2016 RPE_RS18090 32e5fdc0bdd615acd5c14f5fd809b3e1 654 Pfam PF14827 Double sensory domain of two-component sensor kinase 41 272 4.6E-26 T 23-04-2016 IPR029150 Double Cache domain 3 RPE_RS18090 32e5fdc0bdd615acd5c14f5fd809b3e1 654 SUPERFAMILY SSF58104 400 647 5.36E-59 T 23-04-2016 RPE_RS18090 32e5fdc0bdd615acd5c14f5fd809b3e1 654 SUPERFAMILY SSF58104 332 359 5.36E-59 T 23-04-2016 RPE_RS18090 32e5fdc0bdd615acd5c14f5fd809b3e1 654 SMART SM00304 304 357 2.8E-6 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS18090 32e5fdc0bdd615acd5c14f5fd809b3e1 654 SMART SM00304 393 460 60.0 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS18090 32e5fdc0bdd615acd5c14f5fd809b3e1 654 SUPERFAMILY SSF103190 57 184 2.24E-12 T 23-04-2016 IPR029151 Periplasmic sensor domain-like RPE_RS18090 32e5fdc0bdd615acd5c14f5fd809b3e1 654 PANTHER PTHR32089 372 651 1.4E-154 T 23-04-2016 RPE_RS18090 32e5fdc0bdd615acd5c14f5fd809b3e1 654 PANTHER PTHR32089 38 339 1.4E-154 T 23-04-2016 RPE_RS18090 32e5fdc0bdd615acd5c14f5fd809b3e1 654 SMART SM00283 394 648 3.9E-38 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS18090 32e5fdc0bdd615acd5c14f5fd809b3e1 654 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 451 647 2.3E-31 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS18090 32e5fdc0bdd615acd5c14f5fd809b3e1 654 Pfam PF00672 HAMP domain 285 352 6.9E-12 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS08980 ec543cc5ba09b95a6816a85d5d5f5ffe 514 SUPERFAMILY SSF56801 10 508 1.57E-125 T 23-04-2016 RPE_RS08980 ec543cc5ba09b95a6816a85d5d5f5ffe 514 Gene3D G3DSA:3.40.50.980 11 168 3.4E-27 T 23-04-2016 RPE_RS08980 ec543cc5ba09b95a6816a85d5d5f5ffe 514 ProSitePatterns PS00455 Putative AMP-binding domain signature. 162 173 - T 23-04-2016 IPR020845 AMP-binding, conserved site RPE_RS08980 ec543cc5ba09b95a6816a85d5d5f5ffe 514 Gene3D G3DSA:2.30.38.10 330 403 1.1E-14 T 23-04-2016 RPE_RS08980 ec543cc5ba09b95a6816a85d5d5f5ffe 514 PANTHER PTHR24096 10 514 4.0E-231 T 23-04-2016 RPE_RS08980 ec543cc5ba09b95a6816a85d5d5f5ffe 514 Pfam PF00501 AMP-binding enzyme 12 412 5.3E-73 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS08980 ec543cc5ba09b95a6816a85d5d5f5ffe 514 PANTHER PTHR24096:SF106 10 514 4.0E-231 T 23-04-2016 RPE_RS08980 ec543cc5ba09b95a6816a85d5d5f5ffe 514 Gene3D G3DSA:3.30.300.30 408 507 1.3E-28 T 23-04-2016 RPE_RS08980 ec543cc5ba09b95a6816a85d5d5f5ffe 514 Gene3D G3DSA:3.40.50.980 169 329 5.6E-37 T 23-04-2016 RPE_RS08980 ec543cc5ba09b95a6816a85d5d5f5ffe 514 Pfam PF13193 AMP-binding enzyme C-terminal domain 421 496 7.4E-14 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 491 502 6.8E-39 T 23-04-2016 RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 153 167 6.8E-39 T 23-04-2016 RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 615 627 6.8E-39 T 23-04-2016 RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 513 523 6.8E-39 T 23-04-2016 RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 591 610 6.8E-39 T 23-04-2016 RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 319 333 6.8E-39 T 23-04-2016 RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 SMART SM00831 4 68 1.9E-4 T 23-04-2016 IPR004014 Cation-transporting P-type ATPase, N-terminal RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 321 327 - T 23-04-2016 IPR018303 P-type ATPase, phosphorylation site RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 Pfam PF00702 haloacid dehalogenase-like hydrolase 317 604 1.1E-23 T 23-04-2016 RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 Gene3D G3DSA:3.40.1110.10 335 495 1.7E-15 T 23-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 PANTHER PTHR24093 743 854 1.8E-219 T 23-04-2016 RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 PANTHER PTHR24093 10 389 1.8E-219 T 23-04-2016 RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 PANTHER PTHR24093 426 727 1.8E-219 T 23-04-2016 RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 561 668 2.1E-29 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 227 337 3.6E-18 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 Pfam PF00122 E1-E2 ATPase 73 310 4.2E-51 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 591 607 1.1E-20 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 761 782 1.1E-20 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 451 469 1.1E-20 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 623 648 1.1E-20 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 563 579 1.1E-20 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 SUPERFAMILY SSF81653 105 217 2.75E-25 T 23-04-2016 RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 Gene3D G3DSA:3.40.1110.10 309 334 2.1E-11 T 23-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 Pfam PF00689 Cation transporting ATPase, C-terminus 675 845 1.3E-25 T 23-04-2016 IPR006068 Cation-transporting P-type ATPase, C-terminal RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 Gene3D G3DSA:2.70.150.10 101 218 1.5E-32 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 Gene3D G3DSA:2.70.150.10 13 47 1.5E-32 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 PANTHER PTHR24093:SF268 743 854 1.8E-219 T 23-04-2016 RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 PANTHER PTHR24093:SF268 10 389 1.8E-219 T 23-04-2016 RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 PANTHER PTHR24093:SF268 426 727 1.8E-219 T 23-04-2016 RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 SUPERFAMILY SSF56784 317 337 1.65E-58 T 23-04-2016 IPR023214 HAD-like domain RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 SUPERFAMILY SSF56784 448 688 1.65E-58 T 23-04-2016 IPR023214 HAD-like domain RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 Pfam PF00690 Cation transporter/ATPase, N-terminus 13 62 5.5E-10 T 23-04-2016 IPR004014 Cation-transporting P-type ATPase, N-terminal RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 SUPERFAMILY SSF81660 326 495 1.72E-14 T 23-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 SUPERFAMILY SSF81665 220 313 4.32E-83 T 23-04-2016 RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 SUPERFAMILY SSF81665 13 106 4.32E-83 T 23-04-2016 RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 SUPERFAMILY SSF81665 641 851 4.32E-83 T 23-04-2016 RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 Gene3D G3DSA:1.20.1110.10 560 849 2.3E-87 T 23-04-2016 IPR023298 P-type ATPase, transmembrane domain RPE_RS12960 96c2d31d469eb6a08ce219a1b28f571b 856 Gene3D G3DSA:1.20.1110.10 48 100 2.3E-87 T 23-04-2016 IPR023298 P-type ATPase, transmembrane domain RPE_RS16455 f923ee7fafa593e0ae78fa3a66c878e0 733 PIRSF PIRSF015589 8 726 2.9E-265 T 23-04-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 RPE_RS16455 f923ee7fafa593e0ae78fa3a66c878e0 733 PANTHER PTHR30218 1 728 0.0 T 23-04-2016 RPE_RS16455 f923ee7fafa593e0ae78fa3a66c878e0 733 SUPERFAMILY SSF56024 519 703 4.49E-67 T 23-04-2016 RPE_RS16455 f923ee7fafa593e0ae78fa3a66c878e0 733 Hamap MF_00347 Polyphosphate kinase [ppk]. 26 706 31.223 T 23-04-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 RPE_RS16455 f923ee7fafa593e0ae78fa3a66c878e0 733 Pfam PF02503 Polyphosphate kinase middle domain 143 339 1.1E-55 T 23-04-2016 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 RPE_RS16455 f923ee7fafa593e0ae78fa3a66c878e0 733 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 28 704 2.3E-286 T 23-04-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 RPE_RS16455 f923ee7fafa593e0ae78fa3a66c878e0 733 Gene3D G3DSA:3.30.1840.10 130 318 2.6E-57 T 23-04-2016 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 RPE_RS16455 f923ee7fafa593e0ae78fa3a66c878e0 733 Gene3D G3DSA:3.30.870.10 519 703 1.4E-70 T 23-04-2016 RPE_RS16455 f923ee7fafa593e0ae78fa3a66c878e0 733 Pfam PF13090 Polyphosphate kinase C-terminal domain 349 702 4.0E-151 T 23-04-2016 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 RPE_RS16455 f923ee7fafa593e0ae78fa3a66c878e0 733 Gene3D G3DSA:3.30.870.10 336 518 3.4E-76 T 23-04-2016 RPE_RS16455 f923ee7fafa593e0ae78fa3a66c878e0 733 Pfam PF13089 Polyphosphate kinase N-terminal domain 29 133 5.5E-34 T 23-04-2016 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 RPE_RS16455 f923ee7fafa593e0ae78fa3a66c878e0 733 SUPERFAMILY SSF140356 26 123 5.49E-36 T 23-04-2016 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 RPE_RS16455 f923ee7fafa593e0ae78fa3a66c878e0 733 SUPERFAMILY SSF56024 335 515 2.28E-55 T 23-04-2016 RPE_RS16455 f923ee7fafa593e0ae78fa3a66c878e0 733 SUPERFAMILY SSF143724 131 331 9.42E-59 T 23-04-2016 RPE_RS16455 f923ee7fafa593e0ae78fa3a66c878e0 733 PANTHER PTHR30218:SF0 1 728 0.0 T 23-04-2016 RPE_RS03145 15047278117dbdbfdd97c3f18dfa2679 229 SUPERFAMILY SSF52172 12 142 1.34E-28 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS03145 15047278117dbdbfdd97c3f18dfa2679 229 Pfam PF00196 Bacterial regulatory proteins, luxR family 163 218 4.4E-18 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS03145 15047278117dbdbfdd97c3f18dfa2679 229 Gene3D G3DSA:3.40.50.2300 12 131 8.0E-28 T 23-04-2016 RPE_RS03145 15047278117dbdbfdd97c3f18dfa2679 229 Pfam PF00072 Response regulator receiver domain 15 124 2.2E-22 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS03145 15047278117dbdbfdd97c3f18dfa2679 229 ProSitePatterns PS00622 LuxR-type HTH domain signature. 178 205 - T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS03145 15047278117dbdbfdd97c3f18dfa2679 229 Gene3D G3DSA:1.10.10.10 132 225 4.4E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS03145 15047278117dbdbfdd97c3f18dfa2679 229 SMART SM00448 13 126 4.4E-22 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS03145 15047278117dbdbfdd97c3f18dfa2679 229 PANTHER PTHR26402 13 224 3.7E-61 T 23-04-2016 RPE_RS03145 15047278117dbdbfdd97c3f18dfa2679 229 PANTHER PTHR26402:SF151 13 224 3.7E-61 T 23-04-2016 RPE_RS03145 15047278117dbdbfdd97c3f18dfa2679 229 SUPERFAMILY SSF46894 158 225 1.97E-18 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RPE_RS03145 15047278117dbdbfdd97c3f18dfa2679 229 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 178 9.6E-9 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS03145 15047278117dbdbfdd97c3f18dfa2679 229 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 178 194 9.6E-9 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS03145 15047278117dbdbfdd97c3f18dfa2679 229 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 194 206 9.6E-9 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS03145 15047278117dbdbfdd97c3f18dfa2679 229 SMART SM00421 161 218 3.2E-20 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS24045 7de02b4e08561bbfb828bc8e32a3bebb 105 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 4 103 3.1E-25 T 23-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RPE_RS24045 7de02b4e08561bbfb828bc8e32a3bebb 105 Gene3D G3DSA:3.30.1310.10 2 104 7.7E-38 T 23-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RPE_RS24045 7de02b4e08561bbfb828bc8e32a3bebb 105 PANTHER PTHR33449:SF1 1 105 2.0E-38 T 23-04-2016 RPE_RS24045 7de02b4e08561bbfb828bc8e32a3bebb 105 PIRSF PIRSF004555 1 105 6.0E-34 T 23-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RPE_RS24045 7de02b4e08561bbfb828bc8e32a3bebb 105 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 2 96 20.252 T 23-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RPE_RS24045 7de02b4e08561bbfb828bc8e32a3bebb 105 Pfam PF02575 YbaB/EbfC DNA-binding family 8 97 4.2E-31 T 23-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RPE_RS24045 7de02b4e08561bbfb828bc8e32a3bebb 105 SUPERFAMILY SSF82607 8 101 5.75E-30 T 23-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RPE_RS24045 7de02b4e08561bbfb828bc8e32a3bebb 105 PANTHER PTHR33449 1 105 2.0E-38 T 23-04-2016 RPE_RS09630 79eedaf2cae7e1340544b992417067fe 135 PRINTS PR01996 Phage major tail protein 1 family signature 108 132 1.1E-47 T 23-04-2016 IPR022344 Gene transfer agent, major tail protein RPE_RS09630 79eedaf2cae7e1340544b992417067fe 135 PRINTS PR01996 Phage major tail protein 1 family signature 49 78 1.1E-47 T 23-04-2016 IPR022344 Gene transfer agent, major tail protein RPE_RS09630 79eedaf2cae7e1340544b992417067fe 135 PRINTS PR01996 Phage major tail protein 1 family signature 1 13 1.1E-47 T 23-04-2016 IPR022344 Gene transfer agent, major tail protein RPE_RS09630 79eedaf2cae7e1340544b992417067fe 135 PRINTS PR01996 Phage major tail protein 1 family signature 81 104 1.1E-47 T 23-04-2016 IPR022344 Gene transfer agent, major tail protein RPE_RS09630 79eedaf2cae7e1340544b992417067fe 135 TIGRFAM TIGR02126 phgtail_TP901_1: phage major tail protein, TP901-1 family 1 128 3.5E-36 T 23-04-2016 IPR011855 Phage major tail protein TP901-1 RPE_RS09630 79eedaf2cae7e1340544b992417067fe 135 Pfam PF06199 Phage tail tube protein 3 132 8.8E-43 T 23-04-2016 IPR011855 Phage major tail protein TP901-1 RPE_RS15965 92de9d40c945e6de433834476e39fbdb 662 SUPERFAMILY SSF53383 256 653 7.18E-127 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS15965 92de9d40c945e6de433834476e39fbdb 662 PANTHER PTHR11601:SF17 257 655 6.7E-183 T 23-04-2016 RPE_RS15965 92de9d40c945e6de433834476e39fbdb 662 PANTHER PTHR11601 257 655 6.7E-183 T 23-04-2016 RPE_RS15965 92de9d40c945e6de433834476e39fbdb 662 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 260 654 4.1E-173 T 23-04-2016 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 RPE_RS15965 92de9d40c945e6de433834476e39fbdb 662 Gene3D G3DSA:3.40.640.10 288 535 1.5E-86 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS15965 92de9d40c945e6de433834476e39fbdb 662 Pfam PF00266 Aminotransferase class-V 277 646 4.7E-146 T 23-04-2016 IPR000192 Aminotransferase class V domain RPE_RS15965 92de9d40c945e6de433834476e39fbdb 662 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 469 488 - T 23-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site RPE_RS15965 92de9d40c945e6de433834476e39fbdb 662 Gene3D G3DSA:3.90.1150.10 536 652 1.9E-28 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS20430 b46c25624640f671b15720c897ebec3d 233 SMART SM00267 60 231 2.0E-43 T 23-04-2016 IPR000160 GGDEF domain RPE_RS20430 b46c25624640f671b15720c897ebec3d 233 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 69 223 1.0E-37 T 23-04-2016 IPR000160 GGDEF domain RPE_RS20430 b46c25624640f671b15720c897ebec3d 233 Pfam PF00990 Diguanylate cyclase, GGDEF domain 71 222 1.3E-36 T 23-04-2016 IPR000160 GGDEF domain RPE_RS20430 b46c25624640f671b15720c897ebec3d 233 PANTHER PTHR10799:SF750 48 55 1.3E-21 T 23-04-2016 RPE_RS20430 b46c25624640f671b15720c897ebec3d 233 PANTHER PTHR10799:SF750 104 221 1.3E-21 T 23-04-2016 RPE_RS20430 b46c25624640f671b15720c897ebec3d 233 SUPERFAMILY SSF55073 78 225 2.51E-40 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS20430 b46c25624640f671b15720c897ebec3d 233 Gene3D G3DSA:3.30.70.270 73 228 7.9E-45 T 23-04-2016 RPE_RS20430 b46c25624640f671b15720c897ebec3d 233 PANTHER PTHR10799 48 55 1.3E-21 T 23-04-2016 RPE_RS20430 b46c25624640f671b15720c897ebec3d 233 PANTHER PTHR10799 104 221 1.3E-21 T 23-04-2016 RPE_RS02785 99c7293fc1c9f767cd493c8604b78364 124 PANTHER PTHR21349 1 122 1.6E-42 T 23-04-2016 RPE_RS02785 99c7293fc1c9f767cd493c8604b78364 124 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 102 23.315 T 23-04-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS02785 99c7293fc1c9f767cd493c8604b78364 124 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 100 8.7E-32 T 23-04-2016 IPR028909 Ribosomal protein L21-like GO:0005840 RPE_RS02785 99c7293fc1c9f767cd493c8604b78364 124 SUPERFAMILY SSF141091 1 100 1.96E-32 T 23-04-2016 IPR028909 Ribosomal protein L21-like GO:0005840 RPE_RS02785 99c7293fc1c9f767cd493c8604b78364 124 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 100 8.4E-28 T 23-04-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS23905 8968730f172120203dbeeae3754aa04b 554 Pfam PF00083 Sugar (and other) transporter 24 335 1.6E-29 T 23-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RPE_RS23905 8968730f172120203dbeeae3754aa04b 554 Gene3D G3DSA:1.20.1250.20 452 547 2.5E-22 T 23-04-2016 RPE_RS23905 8968730f172120203dbeeae3754aa04b 554 Gene3D G3DSA:1.20.1250.20 250 338 2.5E-22 T 23-04-2016 RPE_RS23905 8968730f172120203dbeeae3754aa04b 554 Gene3D G3DSA:1.20.1250.20 22 227 2.6E-24 T 23-04-2016 RPE_RS23905 8968730f172120203dbeeae3754aa04b 554 PANTHER PTHR23508 14 340 2.8E-240 T 23-04-2016 RPE_RS23905 8968730f172120203dbeeae3754aa04b 554 PANTHER PTHR23508 454 551 2.8E-240 T 23-04-2016 RPE_RS23905 8968730f172120203dbeeae3754aa04b 554 SUPERFAMILY SSF103473 456 549 3.75E-58 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS23905 8968730f172120203dbeeae3754aa04b 554 SUPERFAMILY SSF103473 14 342 3.75E-58 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS23905 8968730f172120203dbeeae3754aa04b 554 ProSitePatterns PS00217 Sugar transport proteins signature 2. 131 156 - T 23-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RPE_RS23905 8968730f172120203dbeeae3754aa04b 554 PANTHER PTHR23508:SF7 14 340 2.8E-240 T 23-04-2016 RPE_RS23905 8968730f172120203dbeeae3754aa04b 554 PANTHER PTHR23508:SF7 454 551 2.8E-240 T 23-04-2016 RPE_RS18525 fa499fd9ee0367e799ac4ca7dc505924 102 SUPERFAMILY SSF82771 24 80 1.44E-8 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily RPE_RS18525 fa499fd9ee0367e799ac4ca7dc505924 102 Pfam PF01541 GIY-YIG catalytic domain 13 81 2.4E-13 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily RPE_RS18525 fa499fd9ee0367e799ac4ca7dc505924 102 PANTHER PTHR34477 5 96 1.2E-17 T 23-04-2016 RPE_RS18525 fa499fd9ee0367e799ac4ca7dc505924 102 PANTHER PTHR34477:SF1 5 96 1.2E-17 T 23-04-2016 RPE_RS11405 e671603932773e50904bb5c31b616468 104 PANTHER PTHR33154 1 99 5.8E-41 T 23-04-2016 RPE_RS11405 e671603932773e50904bb5c31b616468 104 SMART SM00418 16 96 6.2E-12 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RPE_RS11405 e671603932773e50904bb5c31b616468 104 SUPERFAMILY SSF46785 2 95 3.29E-17 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS11405 e671603932773e50904bb5c31b616468 104 Gene3D G3DSA:1.10.10.10 11 95 4.8E-18 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS11405 e671603932773e50904bb5c31b616468 104 PANTHER PTHR33154:SF2 1 99 5.8E-41 T 23-04-2016 RPE_RS11405 e671603932773e50904bb5c31b616468 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 18 33 9.4E-10 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RPE_RS11405 e671603932773e50904bb5c31b616468 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 52 67 9.4E-10 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RPE_RS11405 e671603932773e50904bb5c31b616468 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 67 82 9.4E-10 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RPE_RS11405 e671603932773e50904bb5c31b616468 104 Pfam PF12840 Helix-turn-helix domain 17 75 3.8E-14 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS02645 38e7c7ed23ead905577294d1f3a8ee08 702 Gene3D G3DSA:2.170.130.10 56 164 3.4E-31 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RPE_RS02645 38e7c7ed23ead905577294d1f3a8ee08 702 Pfam PF07715 TonB-dependent Receptor Plug Domain 55 163 5.3E-22 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RPE_RS02645 38e7c7ed23ead905577294d1f3a8ee08 702 Gene3D G3DSA:2.40.170.20 165 702 1.9E-69 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RPE_RS02645 38e7c7ed23ead905577294d1f3a8ee08 702 PANTHER PTHR32552 445 702 6.9E-116 T 23-04-2016 RPE_RS02645 38e7c7ed23ead905577294d1f3a8ee08 702 PANTHER PTHR32552 3 425 6.9E-116 T 23-04-2016 RPE_RS02645 38e7c7ed23ead905577294d1f3a8ee08 702 PANTHER PTHR32552:SF0 445 702 6.9E-116 T 23-04-2016 RPE_RS02645 38e7c7ed23ead905577294d1f3a8ee08 702 PANTHER PTHR32552:SF0 3 425 6.9E-116 T 23-04-2016 RPE_RS02645 38e7c7ed23ead905577294d1f3a8ee08 702 Pfam PF00593 TonB dependent receptor 455 699 3.5E-19 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RPE_RS02645 38e7c7ed23ead905577294d1f3a8ee08 702 SUPERFAMILY SSF56935 30 702 2.71E-97 T 23-04-2016 RPE_RS16050 8218d5fdb54ed397844a682ebcaeffaf 375 Gene3D G3DSA:3.30.1490.20 24 87 1.1E-12 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RPE_RS16050 8218d5fdb54ed397844a682ebcaeffaf 375 Pfam PF08442 ATP-grasp domain 2 193 1.3E-45 T 23-04-2016 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RPE_RS16050 8218d5fdb54ed397844a682ebcaeffaf 375 SUPERFAMILY SSF52210 231 373 6.8E-33 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RPE_RS16050 8218d5fdb54ed397844a682ebcaeffaf 375 Gene3D G3DSA:3.40.50.261 232 372 1.2E-36 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RPE_RS16050 8218d5fdb54ed397844a682ebcaeffaf 375 PIRSF PIRSF001554 1 375 3.3E-113 T 23-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RPE_RS16050 8218d5fdb54ed397844a682ebcaeffaf 375 Gene3D G3DSA:3.30.470.20 88 222 3.2E-40 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RPE_RS16050 8218d5fdb54ed397844a682ebcaeffaf 375 SUPERFAMILY SSF56059 1 222 4.95E-49 T 23-04-2016 RPE_RS16050 8218d5fdb54ed397844a682ebcaeffaf 375 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 248 273 - T 23-04-2016 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RPE_RS16050 8218d5fdb54ed397844a682ebcaeffaf 375 PANTHER PTHR11815:SF1 1 375 9.7E-106 T 23-04-2016 RPE_RS16050 8218d5fdb54ed397844a682ebcaeffaf 375 PANTHER PTHR11815 1 375 9.7E-106 T 23-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RPE_RS16050 8218d5fdb54ed397844a682ebcaeffaf 375 Pfam PF00549 CoA-ligase 254 345 2.5E-8 T 23-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RPE_RS19030 e01911e984b81438fe088448faa07115 434 PIRSF PIRSF006066 5 434 1.6E-97 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RPE_RS19030 e01911e984b81438fe088448faa07115 434 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 22 429 4.3E-100 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RPE_RS19030 e01911e984b81438fe088448faa07115 434 PANTHER PTHR33362:SF5 11 434 2.4E-202 T 23-04-2016 RPE_RS19030 e01911e984b81438fe088448faa07115 434 PANTHER PTHR33362 11 434 2.4E-202 T 23-04-2016 RPE_RS19030 e01911e984b81438fe088448faa07115 434 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 11 424 3.1E-109 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RPE_RS03365 a7c74ace1f8be71ad3f359b14dbaa894 402 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 23-04-2016 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Reactome: REACT_22258 RPE_RS03365 a7c74ace1f8be71ad3f359b14dbaa894 402 SUPERFAMILY SSF53901 1 275 1.71E-61 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS03365 a7c74ace1f8be71ad3f359b14dbaa894 402 Pfam PF00108 Thiolase, N-terminal domain 6 225 2.3E-44 T 23-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 RPE_RS03365 a7c74ace1f8be71ad3f359b14dbaa894 402 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 400 1.3E-121 T 23-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RPE_RS03365 a7c74ace1f8be71ad3f359b14dbaa894 402 Gene3D G3DSA:3.40.47.10 4 126 4.4E-54 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS03365 a7c74ace1f8be71ad3f359b14dbaa894 402 Gene3D G3DSA:3.40.47.10 185 285 4.4E-54 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS03365 a7c74ace1f8be71ad3f359b14dbaa894 402 SUPERFAMILY SSF53901 280 401 4.07E-39 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS03365 a7c74ace1f8be71ad3f359b14dbaa894 402 PANTHER PTHR18919 250 402 5.5E-234 T 23-04-2016 RPE_RS03365 a7c74ace1f8be71ad3f359b14dbaa894 402 PANTHER PTHR18919 1 228 5.5E-234 T 23-04-2016 RPE_RS03365 a7c74ace1f8be71ad3f359b14dbaa894 402 Pfam PF02803 Thiolase, C-terminal domain 279 401 1.5E-43 T 23-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 RPE_RS03365 a7c74ace1f8be71ad3f359b14dbaa894 402 ProSitePatterns PS00737 Thiolases signature 2. 348 364 - T 23-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 RPE_RS03365 a7c74ace1f8be71ad3f359b14dbaa894 402 PANTHER PTHR18919:SF12 250 402 5.5E-234 T 23-04-2016 RPE_RS03365 a7c74ace1f8be71ad3f359b14dbaa894 402 PANTHER PTHR18919:SF12 1 228 5.5E-234 T 23-04-2016 RPE_RS03365 a7c74ace1f8be71ad3f359b14dbaa894 402 Gene3D G3DSA:3.40.47.10 144 184 4.7E-56 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS03365 a7c74ace1f8be71ad3f359b14dbaa894 402 Gene3D G3DSA:3.40.47.10 286 401 4.7E-56 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS03365 a7c74ace1f8be71ad3f359b14dbaa894 402 ProSitePatterns PS00099 Thiolases active site. 383 396 - T 23-04-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 RPE_RS03365 a7c74ace1f8be71ad3f359b14dbaa894 402 PIRSF PIRSF000429 1 402 4.7E-113 T 23-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RPE_RS01900 990702f2ee89695e2ada4c86a64821f5 202 PANTHER PTHR11746:SF102 133 197 1.1E-13 T 23-04-2016 RPE_RS01900 990702f2ee89695e2ada4c86a64821f5 202 PANTHER PTHR11746 133 197 1.1E-13 T 23-04-2016 RPE_RS01900 990702f2ee89695e2ada4c86a64821f5 202 TIGRFAM TIGR00172 maf: septum formation protein Maf 9 195 2.2E-35 T 23-04-2016 IPR003697 Maf-like protein GO:0005737 RPE_RS01900 990702f2ee89695e2ada4c86a64821f5 202 SUPERFAMILY SSF52972 8 195 2.75E-47 T 23-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like RPE_RS01900 990702f2ee89695e2ada4c86a64821f5 202 PIRSF PIRSF006305 1 201 2.4E-43 T 23-04-2016 IPR003697 Maf-like protein GO:0005737 RPE_RS01900 990702f2ee89695e2ada4c86a64821f5 202 Hamap MF_00528 Septum formation protein Maf [maf]. 9 201 26.749 T 23-04-2016 IPR003697 Maf-like protein GO:0005737 RPE_RS01900 990702f2ee89695e2ada4c86a64821f5 202 Pfam PF02545 Maf-like protein 10 195 4.0E-40 T 23-04-2016 IPR003697 Maf-like protein GO:0005737 RPE_RS01900 990702f2ee89695e2ada4c86a64821f5 202 Gene3D G3DSA:3.90.950.10 8 196 2.3E-49 T 23-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like RPE_RS05460 e19b4b8d00b7c3309d98efc55fdfe329 77 PANTHER PTHR33678 1 65 2.6E-12 T 23-04-2016 RPE_RS05460 e19b4b8d00b7c3309d98efc55fdfe329 77 Pfam PF13817 IS66 C-terminal element 27 64 4.2E-19 T 23-04-2016 RPE_RS05460 e19b4b8d00b7c3309d98efc55fdfe329 77 PANTHER PTHR33678:SF3 1 65 2.6E-12 T 23-04-2016 RPE_RS05745 e19b4b8d00b7c3309d98efc55fdfe329 77 PANTHER PTHR33678 1 65 2.6E-12 T 23-04-2016 RPE_RS05745 e19b4b8d00b7c3309d98efc55fdfe329 77 Pfam PF13817 IS66 C-terminal element 27 64 4.2E-19 T 23-04-2016 RPE_RS05745 e19b4b8d00b7c3309d98efc55fdfe329 77 PANTHER PTHR33678:SF3 1 65 2.6E-12 T 23-04-2016 RPE_RS02385 2c5e75e393dea8894aef5acc61531726 195 SUPERFAMILY SSF82153 40 194 1.44E-41 T 23-04-2016 IPR000782 FAS1 domain RPE_RS02385 2c5e75e393dea8894aef5acc61531726 195 Pfam PF02469 Fasciclin domain 66 193 1.7E-35 T 23-04-2016 IPR000782 FAS1 domain RPE_RS02385 2c5e75e393dea8894aef5acc61531726 195 Gene3D G3DSA:2.30.180.10 55 194 5.5E-42 T 23-04-2016 IPR000782 FAS1 domain RPE_RS02385 2c5e75e393dea8894aef5acc61531726 195 PANTHER PTHR10900 41 195 4.2E-55 T 23-04-2016 RPE_RS02385 2c5e75e393dea8894aef5acc61531726 195 SMART SM00554 90 194 7.0E-31 T 23-04-2016 IPR000782 FAS1 domain RPE_RS06760 2a18ec27eb07914d75b781a3022d4a1b 486 SUPERFAMILY SSF55785 158 268 2.27E-12 T 23-04-2016 IPR000014 PAS domain RPE_RS06760 2a18ec27eb07914d75b781a3022d4a1b 486 Gene3D G3DSA:3.30.450.20 283 394 2.0E-10 T 23-04-2016 RPE_RS06760 2a18ec27eb07914d75b781a3022d4a1b 486 SUPERFAMILY SSF55785 284 395 2.09E-8 T 23-04-2016 IPR000014 PAS domain RPE_RS06760 2a18ec27eb07914d75b781a3022d4a1b 486 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 160 236 9.9E-6 T 23-04-2016 IPR000014 PAS domain RPE_RS06760 2a18ec27eb07914d75b781a3022d4a1b 486 SMART SM00091 284 353 3.1E-4 T 23-04-2016 IPR000014 PAS domain RPE_RS06760 2a18ec27eb07914d75b781a3022d4a1b 486 SMART SM00091 164 234 8.1E-8 T 23-04-2016 IPR000014 PAS domain RPE_RS06760 2a18ec27eb07914d75b781a3022d4a1b 486 Pfam PF02954 Bacterial regulatory protein, Fis family 433 471 5.0E-12 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RPE_RS06760 2a18ec27eb07914d75b781a3022d4a1b 486 PANTHER PTHR32071 405 484 9.6E-14 T 23-04-2016 RPE_RS06760 2a18ec27eb07914d75b781a3022d4a1b 486 Pfam PF13188 PAS domain 165 215 3.5E-8 T 23-04-2016 IPR000014 PAS domain RPE_RS06760 2a18ec27eb07914d75b781a3022d4a1b 486 Pfam PF13188 PAS domain 286 331 8.3E-7 T 23-04-2016 IPR000014 PAS domain RPE_RS06760 2a18ec27eb07914d75b781a3022d4a1b 486 SUPERFAMILY SSF46689 410 474 5.82E-14 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS06760 2a18ec27eb07914d75b781a3022d4a1b 486 Gene3D G3DSA:3.30.450.20 158 267 1.5E-10 T 23-04-2016 RPE_RS06760 2a18ec27eb07914d75b781a3022d4a1b 486 TIGRFAM TIGR02040 PpsR-CrtJ: transcriptional regulator PpsR 39 473 1.4E-139 T 23-04-2016 IPR011785 Transcription regulator PpsR UniPathway: UPA00683 RPE_RS06760 2a18ec27eb07914d75b781a3022d4a1b 486 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 437 454 8.8E-11 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RPE_RS06760 2a18ec27eb07914d75b781a3022d4a1b 486 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 454 474 8.8E-11 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RPE_RS06760 2a18ec27eb07914d75b781a3022d4a1b 486 Gene3D G3DSA:1.10.10.60 406 474 2.1E-16 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS01120 b602b90e5837602d56046325db5edf0a 497 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 296 307 - T 23-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 RPE_RS01120 b602b90e5837602d56046325db5edf0a 497 PANTHER PTHR11699 8 494 1.1E-289 T 23-04-2016 RPE_RS01120 b602b90e5837602d56046325db5edf0a 497 PANTHER PTHR11699:SF49 8 494 1.1E-289 T 23-04-2016 RPE_RS01120 b602b90e5837602d56046325db5edf0a 497 Gene3D G3DSA:3.40.309.10 282 467 3.5E-70 T 23-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RPE_RS01120 b602b90e5837602d56046325db5edf0a 497 Gene3D G3DSA:3.40.605.10 27 281 7.7E-100 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RPE_RS01120 b602b90e5837602d56046325db5edf0a 497 SUPERFAMILY SSF53720 22 494 3.01E-169 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RPE_RS01120 b602b90e5837602d56046325db5edf0a 497 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 44 490 2.6E-215 T 23-04-2016 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 UniPathway: UPA00733 RPE_RS01120 b602b90e5837602d56046325db5edf0a 497 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 268 275 - T 23-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 RPE_RS01120 b602b90e5837602d56046325db5edf0a 497 Pfam PF00171 Aldehyde dehydrogenase family 43 492 7.1E-170 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RPE_RS18070 753362d6aa43c0f1cfccb56b9b25960e 176 ProSitePatterns PS01014 Transcription termination factor nusG signature. 159 168 - T 23-04-2016 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site RPE_RS18070 753362d6aa43c0f1cfccb56b9b25960e 176 PRINTS PR00338 Transcription termination factor NUSG signature 57 69 6.0E-20 T 23-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 RPE_RS18070 753362d6aa43c0f1cfccb56b9b25960e 176 PRINTS PR00338 Transcription termination factor NUSG signature 152 168 6.0E-20 T 23-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 RPE_RS18070 753362d6aa43c0f1cfccb56b9b25960e 176 PRINTS PR00338 Transcription termination factor NUSG signature 134 149 6.0E-20 T 23-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 RPE_RS18070 753362d6aa43c0f1cfccb56b9b25960e 176 PANTHER PTHR30265 1 176 2.9E-73 T 23-04-2016 RPE_RS18070 753362d6aa43c0f1cfccb56b9b25960e 176 Gene3D G3DSA:2.30.30.30 115 176 1.1E-28 T 23-04-2016 IPR014722 Ribosomal protein L2 domain 2 RPE_RS18070 753362d6aa43c0f1cfccb56b9b25960e 176 SMART SM00738 2 110 6.1E-47 T 23-04-2016 IPR006645 NusG, N-terminal GO:0006355 RPE_RS18070 753362d6aa43c0f1cfccb56b9b25960e 176 Pfam PF02357 Transcription termination factor nusG 3 106 4.0E-26 T 23-04-2016 IPR006645 NusG, N-terminal GO:0006355 RPE_RS18070 753362d6aa43c0f1cfccb56b9b25960e 176 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 5 176 7.6E-69 T 23-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 RPE_RS18070 753362d6aa43c0f1cfccb56b9b25960e 176 SUPERFAMILY SSF82679 3 112 3.92E-38 T 23-04-2016 IPR006645 NusG, N-terminal GO:0006355 RPE_RS18070 753362d6aa43c0f1cfccb56b9b25960e 176 Gene3D G3DSA:3.30.70.940 3 113 6.5E-43 T 23-04-2016 IPR006645 NusG, N-terminal GO:0006355 RPE_RS18070 753362d6aa43c0f1cfccb56b9b25960e 176 Pfam PF00467 KOW motif 126 155 1.4E-5 T 23-04-2016 IPR005824 KOW RPE_RS18070 753362d6aa43c0f1cfccb56b9b25960e 176 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 2 176 24.916 T 23-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 RPE_RS18070 753362d6aa43c0f1cfccb56b9b25960e 176 SUPERFAMILY SSF50104 120 176 1.43E-18 T 23-04-2016 IPR008991 Translation protein SH3-like domain RPE_RS18070 753362d6aa43c0f1cfccb56b9b25960e 176 SMART SM00739 122 149 4.5E-5 T 23-04-2016 IPR005824 KOW RPE_RS22505 87f1a0b556edf7ceaff0a58497b1921e 234 PANTHER PTHR10108 19 188 1.9E-20 T 23-04-2016 RPE_RS22505 87f1a0b556edf7ceaff0a58497b1921e 234 Pfam PF13649 Methyltransferase domain 59 159 1.4E-16 T 23-04-2016 RPE_RS22505 87f1a0b556edf7ceaff0a58497b1921e 234 SUPERFAMILY SSF53335 19 199 1.31E-33 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS22505 87f1a0b556edf7ceaff0a58497b1921e 234 Gene3D G3DSA:3.40.50.150 22 199 1.4E-29 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS05690 87a7981ec131a3f7ffed1b032d0d527f 263 SUPERFAMILY SSF52540 39 248 3.99E-24 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS05690 87a7981ec131a3f7ffed1b032d0d527f 263 PANTHER PTHR10046:SF44 117 191 1.9E-13 T 23-04-2016 RPE_RS05690 87a7981ec131a3f7ffed1b032d0d527f 263 Gene3D G3DSA:3.40.50.300 50 210 6.3E-19 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS05690 87a7981ec131a3f7ffed1b032d0d527f 263 PANTHER PTHR10046 117 191 1.9E-13 T 23-04-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 RPE_RS05690 87a7981ec131a3f7ffed1b032d0d527f 263 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 53 192 4.1E-10 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RPE_RS05690 87a7981ec131a3f7ffed1b032d0d527f 263 SMART SM00382 49 196 2.0E-6 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS12625 8f82fddfddac2be8f19c8f4b68e4bfab 423 Pfam PF07687 Peptidase dimerisation domain 225 320 1.5E-7 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RPE_RS12625 8f82fddfddac2be8f19c8f4b68e4bfab 423 SUPERFAMILY SSF53187 17 224 7.07E-76 T 23-04-2016 RPE_RS12625 8f82fddfddac2be8f19c8f4b68e4bfab 423 SUPERFAMILY SSF53187 337 417 7.07E-76 T 23-04-2016 RPE_RS12625 8f82fddfddac2be8f19c8f4b68e4bfab 423 PIRSF PIRSF037215 12 423 1.1E-171 T 23-04-2016 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 RPE_RS12625 8f82fddfddac2be8f19c8f4b68e4bfab 423 PANTHER PTHR11014:SF3 17 104 5.8E-157 T 23-04-2016 RPE_RS12625 8f82fddfddac2be8f19c8f4b68e4bfab 423 PANTHER PTHR11014:SF3 145 423 5.8E-157 T 23-04-2016 RPE_RS12625 8f82fddfddac2be8f19c8f4b68e4bfab 423 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 152 191 - T 23-04-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 RPE_RS12625 8f82fddfddac2be8f19c8f4b68e4bfab 423 TIGRFAM TIGR01882 peptidase-T: peptidase T 17 423 8.9E-133 T 23-04-2016 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 RPE_RS12625 8f82fddfddac2be8f19c8f4b68e4bfab 423 Pfam PF01546 Peptidase family M20/M25/M40 153 416 1.6E-15 T 23-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 RPE_RS12625 8f82fddfddac2be8f19c8f4b68e4bfab 423 SUPERFAMILY SSF55031 223 334 1.88E-24 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RPE_RS12625 8f82fddfddac2be8f19c8f4b68e4bfab 423 Gene3D G3DSA:3.30.70.360 224 334 5.9E-31 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RPE_RS12625 8f82fddfddac2be8f19c8f4b68e4bfab 423 Gene3D G3DSA:3.40.630.10 17 223 4.3E-111 T 23-04-2016 RPE_RS12625 8f82fddfddac2be8f19c8f4b68e4bfab 423 Gene3D G3DSA:3.40.630.10 337 421 4.3E-111 T 23-04-2016 RPE_RS12625 8f82fddfddac2be8f19c8f4b68e4bfab 423 PANTHER PTHR11014 17 104 5.8E-157 T 23-04-2016 RPE_RS12625 8f82fddfddac2be8f19c8f4b68e4bfab 423 PANTHER PTHR11014 145 423 5.8E-157 T 23-04-2016 RPE_RS23415 af6d9aae9fd33a4a57075ddd91f2fbe4 270 SMART SM00382 50 235 5.2E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS23415 af6d9aae9fd33a4a57075ddd91f2fbe4 270 Gene3D G3DSA:3.40.50.300 16 248 1.2E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS23415 af6d9aae9fd33a4a57075ddd91f2fbe4 270 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS23415 af6d9aae9fd33a4a57075ddd91f2fbe4 270 PANTHER PTHR24220 27 250 6.8E-80 T 23-04-2016 RPE_RS23415 af6d9aae9fd33a4a57075ddd91f2fbe4 270 Pfam PF00005 ABC transporter 41 184 1.6E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS23415 af6d9aae9fd33a4a57075ddd91f2fbe4 270 TIGRFAM TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system 25 260 4.2E-101 T 23-04-2016 IPR022467 ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system RPE_RS23415 af6d9aae9fd33a4a57075ddd91f2fbe4 270 SUPERFAMILY SSF52540 17 245 4.18E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS24800 bacf520ef217db04bdecd240881b0800 258 Gene3D G3DSA:1.10.10.60 204 249 2.5E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS24800 bacf520ef217db04bdecd240881b0800 258 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 202 243 - T 23-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RPE_RS24800 bacf520ef217db04bdecd240881b0800 258 Gene3D G3DSA:2.60.120.10 6 89 1.0E-9 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS24800 bacf520ef217db04bdecd240881b0800 258 SUPERFAMILY SSF46689 151 198 1.52E-7 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS24800 bacf520ef217db04bdecd240881b0800 258 SUPERFAMILY SSF51182 12 103 5.16E-10 T 23-04-2016 IPR011051 RmlC-like cupin domain RPE_RS24800 bacf520ef217db04bdecd240881b0800 258 Pfam PF07883 Cupin domain 18 74 1.2E-7 T 23-04-2016 IPR013096 Cupin 2, conserved barrel RPE_RS24800 bacf520ef217db04bdecd240881b0800 258 PANTHER PTHR11019 30 255 1.9E-30 T 23-04-2016 RPE_RS24800 bacf520ef217db04bdecd240881b0800 258 PANTHER PTHR11019:SF75 30 255 1.9E-30 T 23-04-2016 RPE_RS24800 bacf520ef217db04bdecd240881b0800 258 Gene3D G3DSA:1.10.10.60 145 203 3.2E-13 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS24800 bacf520ef217db04bdecd240881b0800 258 SMART SM00342 165 247 1.0E-23 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RPE_RS24800 bacf520ef217db04bdecd240881b0800 258 SUPERFAMILY SSF46689 202 251 8.51E-10 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS24800 bacf520ef217db04bdecd240881b0800 258 Pfam PF12833 Helix-turn-helix domain 171 248 2.1E-21 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RPE_RS23890 d782138de270f46e05178e2f0efe8b0b 207 Pfam PF01323 DSBA-like thioredoxin domain 5 197 2.8E-37 T 23-04-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 RPE_RS23890 d782138de270f46e05178e2f0efe8b0b 207 SUPERFAMILY SSF52833 4 198 1.14E-38 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS23890 d782138de270f46e05178e2f0efe8b0b 207 PIRSF PIRSF006386 1 204 2.2E-53 T 23-04-2016 IPR014440 HCCA isomerase/glutathione S-transferase kappa RPE_RS23890 d782138de270f46e05178e2f0efe8b0b 207 PANTHER PTHR13887 5 196 9.8E-28 T 23-04-2016 RPE_RS23890 d782138de270f46e05178e2f0efe8b0b 207 Gene3D G3DSA:3.40.30.10 2 197 1.9E-46 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS15870 a5dda619261907d3bcd8ca561a3be9de 180 PANTHER PTHR23091:SF274 9 178 3.9E-32 T 23-04-2016 RPE_RS15870 a5dda619261907d3bcd8ca561a3be9de 180 SUPERFAMILY SSF55729 7 169 4.99E-30 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS15870 a5dda619261907d3bcd8ca561a3be9de 180 PANTHER PTHR23091 9 178 3.9E-32 T 23-04-2016 RPE_RS15870 a5dda619261907d3bcd8ca561a3be9de 180 Pfam PF13420 Acetyltransferase (GNAT) domain 9 165 3.8E-16 T 23-04-2016 RPE_RS15870 a5dda619261907d3bcd8ca561a3be9de 180 Gene3D G3DSA:3.40.630.30 7 173 9.7E-36 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS18620 5dc0171640c0d54ca4780adab04d68fc 429 Pfam PF13660 Domain of unknown function (DUF4147) 12 233 1.2E-75 T 23-04-2016 IPR025286 MOFRL-associated domain RPE_RS18620 5dc0171640c0d54ca4780adab04d68fc 429 PANTHER PTHR12227:SF0 1 426 1.8E-135 T 23-04-2016 RPE_RS18620 5dc0171640c0d54ca4780adab04d68fc 429 PANTHER PTHR12227 1 426 1.8E-135 T 23-04-2016 RPE_RS18620 5dc0171640c0d54ca4780adab04d68fc 429 Pfam PF05161 MOFRL family 309 415 2.2E-37 T 23-04-2016 IPR007835 MOFRL domain RPE_RS18620 5dc0171640c0d54ca4780adab04d68fc 429 SUPERFAMILY SSF82544 8 421 2.22E-142 T 23-04-2016 RPE_RS18620 5dc0171640c0d54ca4780adab04d68fc 429 Gene3D G3DSA:3.40.50.10180 12 242 1.5E-89 T 23-04-2016 RPE_RS18620 5dc0171640c0d54ca4780adab04d68fc 429 Gene3D G3DSA:3.40.1480.10 243 422 2.5E-66 T 23-04-2016 IPR007835 MOFRL domain RPE_RS10125 e776d14ad32180a03bb451cea4b0deda 340 SUPERFAMILY SSF51735 137 293 2.96E-50 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS10125 e776d14ad32180a03bb451cea4b0deda 340 SMART SM00829 5 338 2.4E-35 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RPE_RS10125 e776d14ad32180a03bb451cea4b0deda 340 PANTHER PTHR11695:SF605 12 340 5.4E-105 T 23-04-2016 RPE_RS10125 e776d14ad32180a03bb451cea4b0deda 340 Pfam PF00107 Zinc-binding dehydrogenase 177 304 3.8E-39 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RPE_RS10125 e776d14ad32180a03bb451cea4b0deda 340 SUPERFAMILY SSF50129 1 170 1.67E-44 T 23-04-2016 IPR011032 GroES-like RPE_RS10125 e776d14ad32180a03bb451cea4b0deda 340 Gene3D G3DSA:3.90.180.10 1 171 3.8E-39 T 23-04-2016 IPR011032 GroES-like RPE_RS10125 e776d14ad32180a03bb451cea4b0deda 340 PANTHER PTHR11695 12 340 5.4E-105 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RPE_RS10125 e776d14ad32180a03bb451cea4b0deda 340 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 134 2.9E-26 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RPE_RS10125 e776d14ad32180a03bb451cea4b0deda 340 Gene3D G3DSA:3.40.50.720 172 288 2.3E-35 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS23385 90a0bbdfc53188522ee358f16aa7868f 369 PANTHER PTHR11695:SF560 128 369 1.2E-196 T 23-04-2016 RPE_RS23385 90a0bbdfc53188522ee358f16aa7868f 369 PANTHER PTHR11695:SF560 15 108 1.2E-196 T 23-04-2016 RPE_RS23385 90a0bbdfc53188522ee358f16aa7868f 369 PANTHER PTHR11695 128 369 1.2E-196 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RPE_RS23385 90a0bbdfc53188522ee358f16aa7868f 369 PANTHER PTHR11695 15 108 1.2E-196 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RPE_RS23385 90a0bbdfc53188522ee358f16aa7868f 369 SUPERFAMILY SSF50129 319 369 1.18E-12 T 23-04-2016 IPR011032 GroES-like RPE_RS23385 90a0bbdfc53188522ee358f16aa7868f 369 Pfam PF00107 Zinc-binding dehydrogenase 197 320 4.8E-22 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RPE_RS23385 90a0bbdfc53188522ee358f16aa7868f 369 Gene3D G3DSA:3.90.180.10 1 189 1.9E-62 T 23-04-2016 IPR011032 GroES-like RPE_RS23385 90a0bbdfc53188522ee358f16aa7868f 369 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 23-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 RPE_RS23385 90a0bbdfc53188522ee358f16aa7868f 369 SUPERFAMILY SSF51735 160 334 1.46E-45 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS23385 90a0bbdfc53188522ee358f16aa7868f 369 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 2 369 7.0E-185 T 23-04-2016 IPR014183 Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00040+1.1.1.-|KEGG: 00051+1.1.1.-|KEGG: 00071+1.1.1.1|KEGG: 00140+1.1.1.-|KEGG: 00240+1.1.1.-|KEGG: 00253+1.1.1.-|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00362+1.1.1.-|KEGG: 00363+1.1.1.-|KEGG: 00365+1.1.1.-|KEGG: 00400+1.1.1.-|KEGG: 00520+1.1.1.-|KEGG: 00523+1.1.1.-|KEGG: 00591+1.1.1.-|KEGG: 00592+1.1.1.1|KEGG: 00620+1.1.1.28|KEGG: 00622+1.1.1.-|KEGG: 00625+1.1.1.1+1.1.1.-|KEGG: 00626+1.1.1.1|KEGG: 00633+1.1.1.-|KEGG: 00640+1.1.1.-|KEGG: 00650+1.1.1.-|KEGG: 00680+1.1.1.284+1.1.1.-|KEGG: 00720+1.1.1.-|KEGG: 00750+1.1.1.-|KEGG: 00830+1.1.1.1+1.1.1.-|KEGG: 00950+1.1.1.-|KEGG: 00966+1.1.1.-|KEGG: 00980+1.1.1.1|KEGG: 00981+1.1.1.-|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6454|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-6901|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396 RPE_RS23385 90a0bbdfc53188522ee358f16aa7868f 369 Gene3D G3DSA:3.40.50.720 190 309 8.5E-40 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS23385 90a0bbdfc53188522ee358f16aa7868f 369 SUPERFAMILY SSF50129 1 183 1.28E-67 T 23-04-2016 IPR011032 GroES-like RPE_RS23385 90a0bbdfc53188522ee358f16aa7868f 369 SMART SM00829 10 367 0.0067 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RPE_RS23385 90a0bbdfc53188522ee358f16aa7868f 369 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 120 2.0E-23 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RPE_RS21515 0c2d3a29f453d478867cb2269ed8cc18 285 Gene3D G3DSA:3.10.129.10 143 283 2.0E-9 T 23-04-2016 IPR029069 HotDog domain RPE_RS21515 0c2d3a29f453d478867cb2269ed8cc18 285 SUPERFAMILY SSF54637 180 284 3.58E-14 T 23-04-2016 IPR029069 HotDog domain RPE_RS21515 0c2d3a29f453d478867cb2269ed8cc18 285 PANTHER PTHR28152 37 285 1.8E-65 T 23-04-2016 RPE_RS21515 0c2d3a29f453d478867cb2269ed8cc18 285 Pfam PF13452 N-terminal half of MaoC dehydratase 78 144 1.3E-11 T 23-04-2016 RPE_RS13070 1c8d83b0a4d8250eef7afe3a27a14557 163 SUPERFAMILY SSF55620 36 157 5.11E-24 T 23-04-2016 RPE_RS13070 1c8d83b0a4d8250eef7afe3a27a14557 163 PANTHER PTHR34354:SF1 33 156 3.2E-50 T 23-04-2016 RPE_RS13070 1c8d83b0a4d8250eef7afe3a27a14557 163 Pfam PF14489 QueF-like protein 67 145 3.6E-31 T 23-04-2016 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 RPE_RS13070 1c8d83b0a4d8250eef7afe3a27a14557 163 Gene3D G3DSA:3.30.1130.10 24 147 2.8E-43 T 23-04-2016 RPE_RS13070 1c8d83b0a4d8250eef7afe3a27a14557 163 PANTHER PTHR34354 33 156 3.2E-50 T 23-04-2016 RPE_RS13070 1c8d83b0a4d8250eef7afe3a27a14557 163 Hamap MF_00818 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 163 68.144 T 23-04-2016 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 RPE_RS13070 1c8d83b0a4d8250eef7afe3a27a14557 163 TIGRFAM TIGR03139 QueF-II: 7-cyano-7-deazaguanine reductase 35 142 3.8E-40 T 23-04-2016 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 RPE_RS08195 600ecec5d347db42c566647f4ad5132f 220 SMART SM00387 112 211 0.0014 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS08195 600ecec5d347db42c566647f4ad5132f 220 PANTHER PTHR24423 22 190 3.3E-12 T 23-04-2016 RPE_RS08195 600ecec5d347db42c566647f4ad5132f 220 SUPERFAMILY SSF55874 72 205 1.83E-12 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS08195 600ecec5d347db42c566647f4ad5132f 220 PANTHER PTHR24423:SF472 22 190 3.3E-12 T 23-04-2016 RPE_RS08195 600ecec5d347db42c566647f4ad5132f 220 Gene3D G3DSA:3.30.565.10 71 208 2.9E-8 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS08195 600ecec5d347db42c566647f4ad5132f 220 Pfam PF07568 Histidine kinase 18 86 3.8E-9 T 23-04-2016 IPR011495 Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain RPE_RS22970 f6adf8e22d1797023506e1af50e16ee8 229 PANTHER PTHR24220:SF404 3 219 1.1E-119 T 23-04-2016 RPE_RS22970 f6adf8e22d1797023506e1af50e16ee8 229 Gene3D G3DSA:3.40.50.300 1 225 4.9E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS22970 f6adf8e22d1797023506e1af50e16ee8 229 PANTHER PTHR24220 3 219 1.1E-119 T 23-04-2016 RPE_RS22970 f6adf8e22d1797023506e1af50e16ee8 229 SUPERFAMILY SSF52540 2 217 2.98E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS22970 f6adf8e22d1797023506e1af50e16ee8 229 Pfam PF00005 ABC transporter 17 158 3.9E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS22970 f6adf8e22d1797023506e1af50e16ee8 229 SMART SM00382 26 208 1.2E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS22970 f6adf8e22d1797023506e1af50e16ee8 229 TIGRFAM TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE 2 229 3.1E-99 T 23-04-2016 IPR017780 ABC transporter, urea, ATP-binding protein, UrtE RPE_RS12620 1da2194a73a8e53beeb289d1cb55ecb4 413 SUPERFAMILY SSF111369 57 311 8.24E-57 T 23-04-2016 RPE_RS12620 1da2194a73a8e53beeb289d1cb55ecb4 413 PANTHER PTHR30158 5 387 3.9E-108 T 23-04-2016 RPE_RS12620 1da2194a73a8e53beeb289d1cb55ecb4 413 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 73 304 1.7E-16 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RPE_RS12620 1da2194a73a8e53beeb289d1cb55ecb4 413 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 46 384 2.0E-72 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RPE_RS12620 1da2194a73a8e53beeb289d1cb55ecb4 413 PANTHER PTHR30158:SF8 5 387 3.9E-108 T 23-04-2016 RPE_RS12620 1da2194a73a8e53beeb289d1cb55ecb4 413 Gene3D G3DSA:2.40.50.100 179 204 5.3E-14 T 23-04-2016 RPE_RS12620 1da2194a73a8e53beeb289d1cb55ecb4 413 Gene3D G3DSA:2.40.50.100 71 104 5.3E-14 T 23-04-2016 RPE_RS03115 ec9a80ef3677b330070af8084f4642ce 197 PANTHER PTHR11403 29 197 3.7E-62 T 23-04-2016 IPR024791 Cytochrome c oxidase subunit III GO:0015002|GO:0016020|GO:0019646 RPE_RS03115 ec9a80ef3677b330070af8084f4642ce 197 Gene3D G3DSA:1.20.120.80 27 196 9.6E-45 T 23-04-2016 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 RPE_RS03115 ec9a80ef3677b330070af8084f4642ce 197 Pfam PF00510 Cytochrome c oxidase subunit III 30 195 1.0E-14 T 23-04-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 RPE_RS03115 ec9a80ef3677b330070af8084f4642ce 197 SUPERFAMILY SSF81452 19 196 4.97E-47 T 23-04-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 RPE_RS03115 ec9a80ef3677b330070af8084f4642ce 197 PANTHER PTHR11403:SF6 29 197 3.7E-62 T 23-04-2016 RPE_RS19650 a270784698afde1ebe6467597efddbf6 167 SMART SM00448 23 139 9.0E-11 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS19650 a270784698afde1ebe6467597efddbf6 167 Pfam PF00072 Response regulator receiver domain 26 136 2.2E-16 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS19650 a270784698afde1ebe6467597efddbf6 167 PANTHER PTHR26402 23 109 2.4E-17 T 23-04-2016 RPE_RS19650 a270784698afde1ebe6467597efddbf6 167 PANTHER PTHR26402:SF547 23 109 2.4E-17 T 23-04-2016 RPE_RS19650 a270784698afde1ebe6467597efddbf6 167 SUPERFAMILY SSF52172 24 144 1.18E-21 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS19650 a270784698afde1ebe6467597efddbf6 167 Gene3D G3DSA:3.40.50.2300 24 141 3.5E-20 T 23-04-2016 RPE_RS21405 b9afd7e21861c7468a4f225fd347d02b 936 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 257 316 2.6E-13 T 23-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RPE_RS21405 b9afd7e21861c7468a4f225fd347d02b 936 PRINTS PR00344 Bacterial sensor protein C-terminal signature 448 458 1.9E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS21405 b9afd7e21861c7468a4f225fd347d02b 936 PRINTS PR00344 Bacterial sensor protein C-terminal signature 464 482 1.9E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS21405 b9afd7e21861c7468a4f225fd347d02b 936 PRINTS PR00344 Bacterial sensor protein C-terminal signature 488 501 1.9E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS21405 b9afd7e21861c7468a4f225fd347d02b 936 PRINTS PR00344 Bacterial sensor protein C-terminal signature 406 420 1.9E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS21405 b9afd7e21861c7468a4f225fd347d02b 936 Gene3D G3DSA:3.30.565.10 320 503 1.6E-36 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS21405 b9afd7e21861c7468a4f225fd347d02b 936 SUPERFAMILY SSF55874 319 502 7.73E-40 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS21405 b9afd7e21861c7468a4f225fd347d02b 936 Gene3D G3DSA:2.40.50.180 534 595 2.3E-16 T 23-04-2016 RPE_RS21405 b9afd7e21861c7468a4f225fd347d02b 936 Gene3D G3DSA:2.40.50.180 691 748 6.2E-7 T 23-04-2016 RPE_RS21405 b9afd7e21861c7468a4f225fd347d02b 936 SUPERFAMILY SSF50341 503 639 1.57E-27 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS21405 b9afd7e21861c7468a4f225fd347d02b 936 Pfam PF00072 Response regulator receiver domain 812 923 1.2E-19 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS21405 b9afd7e21861c7468a4f225fd347d02b 936 PANTHER PTHR22617 1 656 2.7E-214 T 23-04-2016 RPE_RS21405 b9afd7e21861c7468a4f225fd347d02b 936 SUPERFAMILY SSF47384 257 317 2.08E-13 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS21405 b9afd7e21861c7468a4f225fd347d02b 936 Gene3D G3DSA:1.20.120.160 1 136 2.4E-29 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS21405 b9afd7e21861c7468a4f225fd347d02b 936 SUPERFAMILY SSF50341 668 789 1.57E-11 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS21405 b9afd7e21861c7468a4f225fd347d02b 936 Gene3D G3DSA:2.30.30.40 504 525 3.3E-18 T 23-04-2016 RPE_RS21405 b9afd7e21861c7468a4f225fd347d02b 936 Gene3D G3DSA:2.30.30.40 596 639 3.3E-18 T 23-04-2016 RPE_RS21405 b9afd7e21861c7468a4f225fd347d02b 936 SMART SM00448 810 923 1.3E-28 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS21405 b9afd7e21861c7468a4f225fd347d02b 936 SMART SM00387 361 504 7.7E-25 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS21405 b9afd7e21861c7468a4f225fd347d02b 936 SMART SM00073 1 97 2.4E-23 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS21405 b9afd7e21861c7468a4f225fd347d02b 936 Pfam PF01627 Hpt domain 3 94 1.2E-15 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS21405 b9afd7e21861c7468a4f225fd347d02b 936 SUPERFAMILY SSF47226 1 119 5.5E-26 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS21405 b9afd7e21861c7468a4f225fd347d02b 936 Gene3D G3DSA:3.40.50.2300 809 934 1.1E-29 T 23-04-2016 RPE_RS21405 b9afd7e21861c7468a4f225fd347d02b 936 Pfam PF01584 CheW-like domain 509 642 2.5E-21 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS21405 b9afd7e21861c7468a4f225fd347d02b 936 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 364 503 4.3E-16 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS21405 b9afd7e21861c7468a4f225fd347d02b 936 SMART SM01231 256 316 1.6E-17 T 23-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RPE_RS21405 b9afd7e21861c7468a4f225fd347d02b 936 SUPERFAMILY SSF52172 811 930 2.85E-29 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS21405 b9afd7e21861c7468a4f225fd347d02b 936 PANTHER PTHR22617:SF6 1 656 2.7E-214 T 23-04-2016 RPE_RS21405 b9afd7e21861c7468a4f225fd347d02b 936 Gene3D G3DSA:1.10.287.560 256 317 4.3E-19 T 23-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RPE_RS21405 b9afd7e21861c7468a4f225fd347d02b 936 SMART SM00260 496 640 1.2E-34 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS07715 2e49443a0bf3515b4a4aa1d792d652e9 566 SMART SM00304 216 269 5.1E-9 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS07715 2e49443a0bf3515b4a4aa1d792d652e9 566 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 433 462 1.9E-7 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS07715 2e49443a0bf3515b4a4aa1d792d652e9 566 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 334 363 1.9E-7 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS07715 2e49443a0bf3515b4a4aa1d792d652e9 566 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 481 510 1.9E-7 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS07715 2e49443a0bf3515b4a4aa1d792d652e9 566 Pfam PF00672 HAMP domain 197 263 6.3E-10 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS07715 2e49443a0bf3515b4a4aa1d792d652e9 566 PANTHER PTHR32089 284 563 2.0E-169 T 23-04-2016 RPE_RS07715 2e49443a0bf3515b4a4aa1d792d652e9 566 PANTHER PTHR32089 157 251 2.0E-169 T 23-04-2016 RPE_RS07715 2e49443a0bf3515b4a4aa1d792d652e9 566 SMART SM00283 306 560 1.7E-45 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS07715 2e49443a0bf3515b4a4aa1d792d652e9 566 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 384 559 7.6E-36 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS07715 2e49443a0bf3515b4a4aa1d792d652e9 566 PANTHER PTHR32089:SF40 284 563 2.0E-169 T 23-04-2016 RPE_RS07715 2e49443a0bf3515b4a4aa1d792d652e9 566 PANTHER PTHR32089:SF40 157 251 2.0E-169 T 23-04-2016 RPE_RS07715 2e49443a0bf3515b4a4aa1d792d652e9 566 SUPERFAMILY SSF58104 245 271 7.19E-64 T 23-04-2016 RPE_RS07715 2e49443a0bf3515b4a4aa1d792d652e9 566 SUPERFAMILY SSF58104 312 559 7.19E-64 T 23-04-2016 RPE_RS07715 2e49443a0bf3515b4a4aa1d792d652e9 566 Gene3D G3DSA:1.10.287.950 328 531 4.0E-48 T 23-04-2016 RPE_RS20160 5a42addaea14530f0d85694d24ea9e9e 84 Pfam PF01381 Helix-turn-helix 13 65 4.2E-15 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RPE_RS20160 5a42addaea14530f0d85694d24ea9e9e 84 Gene3D G3DSA:1.10.260.40 1 73 7.5E-21 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS20160 5a42addaea14530f0d85694d24ea9e9e 84 PANTHER PTHR10245 3 84 1.5E-14 T 23-04-2016 RPE_RS20160 5a42addaea14530f0d85694d24ea9e9e 84 SMART SM00530 10 65 7.3E-13 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RPE_RS20160 5a42addaea14530f0d85694d24ea9e9e 84 SUPERFAMILY SSF47413 1 71 1.64E-18 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS01715 849d3feed782040ad07b3d9826448bbe 207 PIRSF PIRSF000709 1 201 5.2E-8 T 23-04-2016 RPE_RS01715 849d3feed782040ad07b3d9826448bbe 207 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 6 197 1.2E-38 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RPE_RS01715 849d3feed782040ad07b3d9826448bbe 207 Gene3D G3DSA:3.40.50.1240 4 198 3.4E-73 T 23-04-2016 IPR029033 Histidine phosphatase superfamily RPE_RS01715 849d3feed782040ad07b3d9826448bbe 207 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 3 205 37.806 T 23-04-2016 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484|UniPathway: UPA00109 RPE_RS01715 849d3feed782040ad07b3d9826448bbe 207 PANTHER PTHR11931 1 196 3.5E-109 T 23-04-2016 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484|UniPathway: UPA00109 RPE_RS01715 849d3feed782040ad07b3d9826448bbe 207 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 6 124 1.4E-50 T 23-04-2016 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484|UniPathway: UPA00109 RPE_RS01715 849d3feed782040ad07b3d9826448bbe 207 SUPERFAMILY SSF53254 5 198 5.76E-63 T 23-04-2016 IPR029033 Histidine phosphatase superfamily RPE_RS01715 849d3feed782040ad07b3d9826448bbe 207 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 8 17 - T 23-04-2016 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 UniPathway: UPA00109 RPE_RS01715 849d3feed782040ad07b3d9826448bbe 207 SMART SM00855 5 166 2.1E-23 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RPE_RS21260 857f5fcd41c952b96d3e4111fa280f39 408 Gene3D G3DSA:3.40.50.150 88 257 3.1E-27 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS21260 857f5fcd41c952b96d3e4111fa280f39 408 Gene3D G3DSA:3.40.50.150 376 399 3.1E-27 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS21260 857f5fcd41c952b96d3e4111fa280f39 408 Pfam PF08484 C-methyltransferase C-terminal domain 246 403 1.2E-63 T 23-04-2016 IPR013691 C-methyltransferase KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.-|UniPathway: UPA00853 RPE_RS21260 857f5fcd41c952b96d3e4111fa280f39 408 PANTHER PTHR10108:SF714 33 293 5.8E-46 T 23-04-2016 RPE_RS21260 857f5fcd41c952b96d3e4111fa280f39 408 Pfam PF08421 Putative zinc binding domain 6 67 3.0E-23 T 23-04-2016 IPR013630 Methyltransferase putative zinc binding domain KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.-|UniPathway: UPA00853 RPE_RS21260 857f5fcd41c952b96d3e4111fa280f39 408 SUPERFAMILY SSF53335 64 263 8.89E-24 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS21260 857f5fcd41c952b96d3e4111fa280f39 408 PANTHER PTHR10108 33 293 5.8E-46 T 23-04-2016 RPE_RS21260 857f5fcd41c952b96d3e4111fa280f39 408 Pfam PF13489 Methyltransferase domain 85 240 1.6E-13 T 23-04-2016 RPE_RS00445 1a9e810430848f378e780db0a22c94e3 746 PANTHER PTHR10799:SF619 133 280 3.9E-98 T 23-04-2016 RPE_RS00445 1a9e810430848f378e780db0a22c94e3 746 PANTHER PTHR10799:SF619 342 560 3.9E-98 T 23-04-2016 RPE_RS00445 1a9e810430848f378e780db0a22c94e3 746 PANTHER PTHR10799:SF619 680 699 3.9E-98 T 23-04-2016 RPE_RS00445 1a9e810430848f378e780db0a22c94e3 746 Gene3D G3DSA:3.20.20.450 484 729 6.2E-94 T 23-04-2016 IPR001633 EAL domain RPE_RS00445 1a9e810430848f378e780db0a22c94e3 746 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 185 305 6.9E-12 T 23-04-2016 IPR000014 PAS domain RPE_RS00445 1a9e810430848f378e780db0a22c94e3 746 Pfam PF00990 Diguanylate cyclase, GGDEF domain 310 464 1.9E-42 T 23-04-2016 IPR000160 GGDEF domain RPE_RS00445 1a9e810430848f378e780db0a22c94e3 746 Pfam PF12860 PAS fold 75 188 9.6E-20 T 23-04-2016 RPE_RS00445 1a9e810430848f378e780db0a22c94e3 746 Pfam PF00563 EAL domain 487 716 9.4E-71 T 23-04-2016 IPR001633 EAL domain RPE_RS00445 1a9e810430848f378e780db0a22c94e3 746 SUPERFAMILY SSF55785 182 296 1.74E-13 T 23-04-2016 IPR000014 PAS domain RPE_RS00445 1a9e810430848f378e780db0a22c94e3 746 SMART SM00091 189 255 0.11 T 23-04-2016 IPR000014 PAS domain RPE_RS00445 1a9e810430848f378e780db0a22c94e3 746 SMART SM00091 68 136 1.9 T 23-04-2016 IPR000014 PAS domain RPE_RS00445 1a9e810430848f378e780db0a22c94e3 746 PANTHER PTHR10799 133 280 3.9E-98 T 23-04-2016 RPE_RS00445 1a9e810430848f378e780db0a22c94e3 746 PANTHER PTHR10799 342 560 3.9E-98 T 23-04-2016 RPE_RS00445 1a9e810430848f378e780db0a22c94e3 746 PANTHER PTHR10799 680 699 3.9E-98 T 23-04-2016 RPE_RS00445 1a9e810430848f378e780db0a22c94e3 746 SUPERFAMILY SSF55785 59 182 9.99E-10 T 23-04-2016 IPR000014 PAS domain RPE_RS00445 1a9e810430848f378e780db0a22c94e3 746 SMART SM00267 298 470 5.9E-53 T 23-04-2016 IPR000160 GGDEF domain RPE_RS00445 1a9e810430848f378e780db0a22c94e3 746 Gene3D G3DSA:3.30.70.270 310 478 6.3E-53 T 23-04-2016 RPE_RS00445 1a9e810430848f378e780db0a22c94e3 746 SUPERFAMILY SSF141868 487 728 3.66E-88 T 23-04-2016 IPR001633 EAL domain RPE_RS00445 1a9e810430848f378e780db0a22c94e3 746 Gene3D G3DSA:3.30.450.20 59 183 2.3E-13 T 23-04-2016 RPE_RS00445 1a9e810430848f378e780db0a22c94e3 746 Gene3D G3DSA:3.30.450.20 184 296 1.6E-11 T 23-04-2016 RPE_RS00445 1a9e810430848f378e780db0a22c94e3 746 SUPERFAMILY SSF55073 314 472 6.43E-46 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS00445 1a9e810430848f378e780db0a22c94e3 746 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 305 468 1.1E-38 T 23-04-2016 IPR000160 GGDEF domain RPE_RS00445 1a9e810430848f378e780db0a22c94e3 746 Pfam PF13188 PAS domain 191 248 2.2E-8 T 23-04-2016 IPR000014 PAS domain RPE_RS00445 1a9e810430848f378e780db0a22c94e3 746 SMART SM00052 480 722 2.4E-116 T 23-04-2016 IPR001633 EAL domain RPE_RS09050 236231f55ccf9a9eeca09d25c1329fe3 228 SUPERFAMILY SSF56529 40 208 8.85E-11 T 23-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RPE_RS09050 236231f55ccf9a9eeca09d25c1329fe3 228 Pfam PF11010 Protein of unknown function (DUF2848) 27 219 2.1E-79 T 23-04-2016 IPR021269 Protein of unknown function DUF2848 RPE_RS09050 236231f55ccf9a9eeca09d25c1329fe3 228 Gene3D G3DSA:3.90.850.10 95 208 9.3E-4 T 23-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RPE_RS07730 cdfd7683cac5c5d6d203033d8c4bc26f 262 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 3 260 5.6E-112 T 23-04-2016 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 RPE_RS07730 cdfd7683cac5c5d6d203033d8c4bc26f 262 SUPERFAMILY SSF117143 92 221 7.06E-35 T 23-04-2016 RPE_RS07730 cdfd7683cac5c5d6d203033d8c4bc26f 262 PANTHER PTHR30435:SF19 1 262 3.6E-107 T 23-04-2016 RPE_RS07730 cdfd7683cac5c5d6d203033d8c4bc26f 262 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 183 260 2.5E-24 T 23-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RPE_RS07730 cdfd7683cac5c5d6d203033d8c4bc26f 262 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 143 243 1.5E-28 T 23-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G RPE_RS07730 cdfd7683cac5c5d6d203033d8c4bc26f 262 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 2 136 5.6E-48 T 23-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G RPE_RS07730 cdfd7683cac5c5d6d203033d8c4bc26f 262 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 10 30 - T 23-04-2016 IPR019776 Flagellar basal body rod protein, conserved site RPE_RS07730 cdfd7683cac5c5d6d203033d8c4bc26f 262 Pfam PF00460 Flagella basal body rod protein 4 34 2.0E-8 T 23-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RPE_RS07730 cdfd7683cac5c5d6d203033d8c4bc26f 262 PANTHER PTHR30435 1 262 3.6E-107 T 23-04-2016 RPE_RS03530 10a90960b77b2cc4a9abb94bb3027480 295 Pfam PF05013 N-formylglutamate amidohydrolase 22 254 9.1E-69 T 23-04-2016 IPR007709 N-formylglutamate amidohydrolase RPE_RS03530 10a90960b77b2cc4a9abb94bb3027480 295 Gene3D G3DSA:3.40.630.40 6 282 3.0E-95 T 23-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 RPE_RS03530 10a90960b77b2cc4a9abb94bb3027480 295 SUPERFAMILY SSF53187 11 283 1.63E-84 T 23-04-2016 RPE_RS16650 e441180f89fcc64526af4bad42cdec36 1279 SUPERFAMILY SSF52540 93 166 1.76E-14 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16650 e441180f89fcc64526af4bad42cdec36 1279 SUPERFAMILY SSF52540 628 830 1.76E-14 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16650 e441180f89fcc64526af4bad42cdec36 1279 Gene3D G3DSA:2.10.109.10 1054 1146 7.9E-5 T 23-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain RPE_RS16650 e441180f89fcc64526af4bad42cdec36 1279 Gene3D G3DSA:3.40.50.300 94 214 1.7E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16650 e441180f89fcc64526af4bad42cdec36 1279 Gene3D G3DSA:3.40.50.300 666 837 1.7E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16650 e441180f89fcc64526af4bad42cdec36 1279 Gene3D G3DSA:3.40.50.300 327 384 1.7E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16650 e441180f89fcc64526af4bad42cdec36 1279 SUPERFAMILY SSF51306 1053 1146 1.17E-5 T 23-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C RPE_RS16650 e441180f89fcc64526af4bad42cdec36 1279 Pfam PF13476 AAA domain 113 202 3.3E-6 T 23-04-2016 RPE_RS04435 d7ff180e746bafa8e51bb99e67bb9651 434 PANTHER PTHR23417:SF2 195 434 5.5E-106 T 23-04-2016 RPE_RS04435 d7ff180e746bafa8e51bb99e67bb9651 434 PANTHER PTHR23417:SF2 135 145 5.5E-106 T 23-04-2016 RPE_RS04435 d7ff180e746bafa8e51bb99e67bb9651 434 PANTHER PTHR23417:SF2 9 116 5.5E-106 T 23-04-2016 RPE_RS04435 d7ff180e746bafa8e51bb99e67bb9651 434 PANTHER PTHR23417 195 434 5.5E-106 T 23-04-2016 RPE_RS04435 d7ff180e746bafa8e51bb99e67bb9651 434 PANTHER PTHR23417 135 145 5.5E-106 T 23-04-2016 RPE_RS04435 d7ff180e746bafa8e51bb99e67bb9651 434 PANTHER PTHR23417 9 116 5.5E-106 T 23-04-2016 RPE_RS04435 d7ff180e746bafa8e51bb99e67bb9651 434 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 40 213 1.4E-55 T 23-04-2016 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675|UniPathway: UPA00958 RPE_RS04435 d7ff180e746bafa8e51bb99e67bb9651 434 SUPERFAMILY SSF53756 58 420 1.57E-10 T 23-04-2016 RPE_RS01140 f37eeafd944b8b1f278584d5483af91f 442 TIGRFAM TIGR01849 PHB_depoly_PhaZ: polyhydroxyalkanoate depolymerase, intracellular 27 429 2.6E-192 T 23-04-2016 IPR010915 Polyhydroxyalkanoate depolymerase RPE_RS01140 f37eeafd944b8b1f278584d5483af91f 442 PIRSF PIRSF020818 21 442 7.3E-204 T 23-04-2016 IPR010915 Polyhydroxyalkanoate depolymerase RPE_RS01140 f37eeafd944b8b1f278584d5483af91f 442 Pfam PF06850 PHB de-polymerase C-terminus 231 430 2.5E-104 T 23-04-2016 IPR009656 PHB de-polymerase, C-terminal RPE_RS01140 f37eeafd944b8b1f278584d5483af91f 442 SUPERFAMILY SSF53474 124 429 7.27E-32 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS10495 61c955d6b687aead7ec5b47b383e5ac9 211 Gene3D G3DSA:1.10.357.10 79 210 2.6E-38 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RPE_RS10495 61c955d6b687aead7ec5b47b383e5ac9 211 Gene3D G3DSA:1.10.10.60 52 77 1.9E-7 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS10495 61c955d6b687aead7ec5b47b383e5ac9 211 PANTHER PTHR30055:SF76 6 209 8.7E-41 T 23-04-2016 RPE_RS10495 61c955d6b687aead7ec5b47b383e5ac9 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 67 1.0E-9 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS10495 61c955d6b687aead7ec5b47b383e5ac9 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 23 36 1.0E-9 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS10495 61c955d6b687aead7ec5b47b383e5ac9 211 Gene3D G3DSA:1.10.10.60 14 51 5.6E-18 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS10495 61c955d6b687aead7ec5b47b383e5ac9 211 PANTHER PTHR30055 6 209 8.7E-41 T 23-04-2016 RPE_RS10495 61c955d6b687aead7ec5b47b383e5ac9 211 ProSitePatterns PS01081 TetR-type HTH domain signature. 35 65 - T 23-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RPE_RS10495 61c955d6b687aead7ec5b47b383e5ac9 211 SUPERFAMILY SSF48498 94 206 3.11E-11 T 23-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RPE_RS10495 61c955d6b687aead7ec5b47b383e5ac9 211 SUPERFAMILY SSF46689 15 84 5.34E-18 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS10495 61c955d6b687aead7ec5b47b383e5ac9 211 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 154 208 6.0E-19 T 23-04-2016 RPE_RS10495 61c955d6b687aead7ec5b47b383e5ac9 211 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 67 1.3E-15 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS14140 c0cc2af3668e5e8e406990d330b71fe9 323 SUPERFAMILY SSF55326 6 137 1.12E-30 T 23-04-2016 RPE_RS14140 c0cc2af3668e5e8e406990d330b71fe9 323 PANTHER PTHR30270:SF0 1 323 1.3E-91 T 23-04-2016 RPE_RS14140 c0cc2af3668e5e8e406990d330b71fe9 323 PIRSF PIRSF005303 2 323 3.1E-72 T 23-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 RPE_RS14140 c0cc2af3668e5e8e406990d330b71fe9 323 SUPERFAMILY SSF56042 142 304 2.84E-32 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RPE_RS14140 c0cc2af3668e5e8e406990d330b71fe9 323 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 3 320 27.457 T 23-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 RPE_RS14140 c0cc2af3668e5e8e406990d330b71fe9 323 Gene3D G3DSA:3.90.650.10 144 323 9.8E-36 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RPE_RS14140 c0cc2af3668e5e8e406990d330b71fe9 323 Pfam PF00586 AIR synthase related protein, N-terminal domain 27 137 1.5E-20 T 23-04-2016 IPR016188 PurM-like, N-terminal domain RPE_RS14140 c0cc2af3668e5e8e406990d330b71fe9 323 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 5 323 1.5E-82 T 23-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 RPE_RS14140 c0cc2af3668e5e8e406990d330b71fe9 323 Pfam PF02769 AIR synthase related protein, C-terminal domain 149 300 3.1E-11 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RPE_RS14140 c0cc2af3668e5e8e406990d330b71fe9 323 Gene3D G3DSA:3.30.1330.10 4 140 1.4E-38 T 23-04-2016 IPR016188 PurM-like, N-terminal domain RPE_RS14140 c0cc2af3668e5e8e406990d330b71fe9 323 PANTHER PTHR30270 1 323 1.3E-91 T 23-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 RPE_RS01240 4429dfbeba7187b24e57f1d036588c06 906 Pfam PF05190 MutS family domain IV 457 552 4.4E-17 T 23-04-2016 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 RPE_RS01240 4429dfbeba7187b24e57f1d036588c06 906 PANTHER PTHR11361 13 906 0.0 T 23-04-2016 RPE_RS01240 4429dfbeba7187b24e57f1d036588c06 906 PIRSF PIRSF037677 14 863 3.5E-151 T 23-04-2016 RPE_RS01240 4429dfbeba7187b24e57f1d036588c06 906 Pfam PF05192 MutS domain III 295 593 4.2E-35 T 23-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 RPE_RS01240 4429dfbeba7187b24e57f1d036588c06 906 PANTHER PTHR11361:SF86 13 906 0.0 T 23-04-2016 RPE_RS01240 4429dfbeba7187b24e57f1d036588c06 906 Pfam PF00488 MutS domain V 652 839 2.9E-84 T 23-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 RPE_RS01240 4429dfbeba7187b24e57f1d036588c06 906 SUPERFAMILY SSF53150 136 306 2.35E-34 T 23-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 RPE_RS01240 4429dfbeba7187b24e57f1d036588c06 906 Pfam PF01624 MutS domain I 25 138 9.0E-42 T 23-04-2016 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 RPE_RS01240 4429dfbeba7187b24e57f1d036588c06 906 Gene3D G3DSA:1.10.1420.10 289 497 3.0E-43 T 23-04-2016 RPE_RS01240 4429dfbeba7187b24e57f1d036588c06 906 Gene3D G3DSA:3.30.420.110 145 281 2.8E-29 T 23-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 RPE_RS01240 4429dfbeba7187b24e57f1d036588c06 906 SUPERFAMILY SSF52540 601 839 1.68E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01240 4429dfbeba7187b24e57f1d036588c06 906 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 24 901 1.0E-253 T 23-04-2016 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 RPE_RS01240 4429dfbeba7187b24e57f1d036588c06 906 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 730 746 - T 23-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 RPE_RS01240 4429dfbeba7187b24e57f1d036588c06 906 Gene3D G3DSA:3.40.1170.10 16 139 1.4E-48 T 23-04-2016 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 RPE_RS01240 4429dfbeba7187b24e57f1d036588c06 906 Pfam PF05188 MutS domain II 147 273 1.7E-19 T 23-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 RPE_RS01240 4429dfbeba7187b24e57f1d036588c06 906 SMART SM00534 649 836 3.6E-110 T 23-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 RPE_RS01240 4429dfbeba7187b24e57f1d036588c06 906 SMART SM00533 309 625 2.7E-67 T 23-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 RPE_RS01240 4429dfbeba7187b24e57f1d036588c06 906 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 23 896 23.276 T 23-04-2016 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 RPE_RS01240 4429dfbeba7187b24e57f1d036588c06 906 Gene3D G3DSA:3.40.50.300 601 839 2.0E-80 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01240 4429dfbeba7187b24e57f1d036588c06 906 SUPERFAMILY SSF55271 18 134 2.75E-39 T 23-04-2016 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 RPE_RS01240 4429dfbeba7187b24e57f1d036588c06 906 SUPERFAMILY SSF48334 293 598 2.35E-69 T 23-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 RPE_RS10235 3dc1c978dc10504a568a5fb6e229612b 85 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 4 34 3.0E-10 T 23-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 RPE_RS10235 3dc1c978dc10504a568a5fb6e229612b 85 ProDom PD030562 SUPPRESSOR HTRA PROTEASE TRANSCRIPTIONAL REGULATOR HTAR SOHA ABRB YDCA BLL1688 3 73 0.001 T 23-04-2016 RPE_RS10235 3dc1c978dc10504a568a5fb6e229612b 85 SMART SM00966 3 49 2.7E-11 T 23-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 RPE_RS10235 3dc1c978dc10504a568a5fb6e229612b 85 Gene3D G3DSA:2.10.260.10 3 43 4.3E-10 T 23-04-2016 RPE_RS10235 3dc1c978dc10504a568a5fb6e229612b 85 SUPERFAMILY SSF89447 2 43 1.46E-10 T 23-04-2016 RPE_RS10235 3dc1c978dc10504a568a5fb6e229612b 85 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 4 41 4.5E-14 T 23-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 RPE_RS00785 cda3f1569c5250204e79703bed4ebc22 299 Pfam PF00892 EamA-like transporter family 9 143 6.8E-8 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RPE_RS00785 cda3f1569c5250204e79703bed4ebc22 299 SUPERFAMILY SSF103481 42 147 4.32E-10 T 23-04-2016 RPE_RS00785 cda3f1569c5250204e79703bed4ebc22 299 PANTHER PTHR22911:SF65 7 296 1.6E-92 T 23-04-2016 RPE_RS00785 cda3f1569c5250204e79703bed4ebc22 299 PANTHER PTHR22911 7 296 1.6E-92 T 23-04-2016 RPE_RS00785 cda3f1569c5250204e79703bed4ebc22 299 SUPERFAMILY SSF103481 205 297 4.32E-9 T 23-04-2016 RPE_RS09160 5964cc23038454bfe5292491e2b872f6 463 Gene3D G3DSA:3.40.640.10 76 309 1.1E-80 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS09160 5964cc23038454bfe5292491e2b872f6 463 Gene3D G3DSA:3.90.1150.10 310 437 1.0E-29 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS09160 5964cc23038454bfe5292491e2b872f6 463 Pfam PF00202 Aminotransferase class-III 44 436 1.1E-91 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RPE_RS09160 5964cc23038454bfe5292491e2b872f6 463 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 235 272 - T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RPE_RS09160 5964cc23038454bfe5292491e2b872f6 463 PANTHER PTHR11986:SF15 1 445 7.2E-260 T 23-04-2016 RPE_RS09160 5964cc23038454bfe5292491e2b872f6 463 PANTHER PTHR11986 1 445 7.2E-260 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RPE_RS09160 5964cc23038454bfe5292491e2b872f6 463 SUPERFAMILY SSF53383 40 437 5.62E-111 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS17545 9efcf73172bcb380f394b34ecdb74dbb 338 Pfam PF01370 NAD dependent epimerase/dehydratase family 11 242 2.1E-49 T 23-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 RPE_RS17545 9efcf73172bcb380f394b34ecdb74dbb 338 Gene3D G3DSA:3.40.50.720 12 223 6.9E-53 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS17545 9efcf73172bcb380f394b34ecdb74dbb 338 Gene3D G3DSA:3.90.25.10 224 246 2.6E-12 T 23-04-2016 RPE_RS17545 9efcf73172bcb380f394b34ecdb74dbb 338 Gene3D G3DSA:3.90.25.10 299 321 2.6E-12 T 23-04-2016 RPE_RS17545 9efcf73172bcb380f394b34ecdb74dbb 338 PANTHER PTHR10366 10 322 9.7E-107 T 23-04-2016 RPE_RS17545 9efcf73172bcb380f394b34ecdb74dbb 338 SUPERFAMILY SSF51735 5 321 2.36E-74 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS17545 9efcf73172bcb380f394b34ecdb74dbb 338 PANTHER PTHR10366:SF234 10 322 9.7E-107 T 23-04-2016 RPE_RS00560 13d1adf118e750ef2a364fba4c09d2fa 438 Pfam PF08245 Mur ligase middle domain 37 263 1.7E-4 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RPE_RS00560 13d1adf118e750ef2a364fba4c09d2fa 438 SUPERFAMILY SSF53623 13 283 4.68E-58 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RPE_RS00560 13d1adf118e750ef2a364fba4c09d2fa 438 Gene3D G3DSA:3.90.190.20 295 423 7.4E-25 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RPE_RS00560 13d1adf118e750ef2a364fba4c09d2fa 438 Gene3D G3DSA:3.40.1190.10 4 294 5.5E-65 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RPE_RS00560 13d1adf118e750ef2a364fba4c09d2fa 438 PANTHER PTHR11136 233 360 2.7E-75 T 23-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 RPE_RS00560 13d1adf118e750ef2a364fba4c09d2fa 438 PANTHER PTHR11136 13 216 2.7E-75 T 23-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 RPE_RS00560 13d1adf118e750ef2a364fba4c09d2fa 438 TIGRFAM TIGR01499 folC: bifunctional protein FolC 32 422 4.2E-74 T 23-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 RPE_RS00560 13d1adf118e750ef2a364fba4c09d2fa 438 SUPERFAMILY SSF53244 293 422 1.5E-20 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RPE_RS00560 13d1adf118e750ef2a364fba4c09d2fa 438 Pfam PF02875 Mur ligase family, glutamate ligase domain 293 372 3.2E-8 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RPE_RS00560 13d1adf118e750ef2a364fba4c09d2fa 438 PIRSF PIRSF001563 4 431 3.9E-82 T 23-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 RPE_RS23550 606241bd7fe282e31b791ab12052815f 235 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 68 7.9E-10 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS23550 606241bd7fe282e31b791ab12052815f 235 PANTHER PTHR30328 1 232 2.1E-63 T 23-04-2016 RPE_RS23550 606241bd7fe282e31b791ab12052815f 235 Gene3D G3DSA:1.10.10.60 8 69 2.0E-19 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS23550 606241bd7fe282e31b791ab12052815f 235 Gene3D G3DSA:1.10.357.10 70 208 9.3E-27 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RPE_RS23550 606241bd7fe282e31b791ab12052815f 235 SUPERFAMILY SSF48498 91 208 5.11E-20 T 23-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RPE_RS23550 606241bd7fe282e31b791ab12052815f 235 PANTHER PTHR30328:SF6 1 232 2.1E-63 T 23-04-2016 RPE_RS23550 606241bd7fe282e31b791ab12052815f 235 Pfam PF13305 WHG domain 98 182 1.3E-13 T 23-04-2016 IPR025996 WHG domain RPE_RS23550 606241bd7fe282e31b791ab12052815f 235 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 67 7.0E-7 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS23550 606241bd7fe282e31b791ab12052815f 235 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 23 36 7.0E-7 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS23550 606241bd7fe282e31b791ab12052815f 235 SUPERFAMILY SSF46689 12 86 3.59E-16 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS15225 fa72480cb09b33bc61da8e761a3e34da 137 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 4 18 8.2E-13 T 23-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 RPE_RS15225 fa72480cb09b33bc61da8e761a3e34da 137 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 98 107 8.2E-13 T 23-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 RPE_RS15225 fa72480cb09b33bc61da8e761a3e34da 137 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 89 97 8.2E-13 T 23-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 RPE_RS15225 fa72480cb09b33bc61da8e761a3e34da 137 PANTHER PTHR30266:SF2 1 136 1.9E-50 T 23-04-2016 RPE_RS15225 fa72480cb09b33bc61da8e761a3e34da 137 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 1 136 7.7E-41 T 23-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 RPE_RS15225 fa72480cb09b33bc61da8e761a3e34da 137 PANTHER PTHR30266 1 136 1.9E-50 T 23-04-2016 RPE_RS15225 fa72480cb09b33bc61da8e761a3e34da 137 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 1 135 7.0E-45 T 23-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 RPE_RS15225 fa72480cb09b33bc61da8e761a3e34da 137 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 11 24 - T 23-04-2016 IPR019823 Large-conductance mechanosensitive channel, conserved site RPE_RS15225 fa72480cb09b33bc61da8e761a3e34da 137 SUPERFAMILY SSF81330 10 131 1.16E-35 T 23-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 RPE_RS15225 fa72480cb09b33bc61da8e761a3e34da 137 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 1 137 25.68 T 23-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 RPE_RS01130 1d321702bfef2ea2329f56bfcf828730 734 SUPERFAMILY SSF53955 112 317 3.09E-75 T 23-04-2016 IPR023346 Lysozyme-like domain RPE_RS01130 1d321702bfef2ea2329f56bfcf828730 734 PANTHER PTHR32282 49 655 4.5E-233 T 23-04-2016 RPE_RS01130 1d321702bfef2ea2329f56bfcf828730 734 Gene3D G3DSA:3.40.710.10 300 662 4.8E-119 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS01130 1d321702bfef2ea2329f56bfcf828730 734 SUPERFAMILY SSF56601 328 660 1.67E-119 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS01130 1d321702bfef2ea2329f56bfcf828730 734 SUPERFAMILY SSF56601 279 301 1.67E-119 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS01130 1d321702bfef2ea2329f56bfcf828730 734 Gene3D G3DSA:1.10.3810.10 124 299 1.5E-74 T 23-04-2016 RPE_RS01130 1d321702bfef2ea2329f56bfcf828730 734 PANTHER PTHR32282:SF5 49 655 4.5E-233 T 23-04-2016 RPE_RS01130 1d321702bfef2ea2329f56bfcf828730 734 Pfam PF00905 Penicillin binding protein transpeptidase domain 383 615 4.7E-34 T 23-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RPE_RS01130 1d321702bfef2ea2329f56bfcf828730 734 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 136 652 4.2E-187 T 23-04-2016 RPE_RS01130 1d321702bfef2ea2329f56bfcf828730 734 Pfam PF00912 Transglycosylase 124 297 1.5E-64 T 23-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 RPE_RS11190 4a551491894dff44d4f210bbde7f61bb 252 TIGRFAM TIGR02434 CobF: precorrin-6A synthase (deacetylating) 5 250 3.6E-110 T 23-04-2016 IPR012797 Cobalamin (vitamin B12) biosynthesis CobF, precorrin-6A synthase GO:0009236|GO:0043819 KEGG: 00860+2.1.1.152|MetaCyc: PWY-7376|UniPathway: UPA00148 RPE_RS11190 4a551491894dff44d4f210bbde7f61bb 252 Gene3D G3DSA:3.30.950.10 147 251 4.2E-45 T 23-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 RPE_RS11190 4a551491894dff44d4f210bbde7f61bb 252 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 6 224 6.5E-33 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RPE_RS11190 4a551491894dff44d4f210bbde7f61bb 252 Gene3D G3DSA:3.40.1010.10 5 146 8.8E-39 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 RPE_RS11190 4a551491894dff44d4f210bbde7f61bb 252 SUPERFAMILY SSF53790 79 249 2.36E-38 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RPE_RS11190 4a551491894dff44d4f210bbde7f61bb 252 SUPERFAMILY SSF53790 5 37 2.36E-38 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RPE_RS11190 4a551491894dff44d4f210bbde7f61bb 252 PANTHER PTHR10882:SF1 6 37 6.1E-35 T 23-04-2016 RPE_RS11190 4a551491894dff44d4f210bbde7f61bb 252 PANTHER PTHR10882:SF1 61 185 6.1E-35 T 23-04-2016 RPE_RS11190 4a551491894dff44d4f210bbde7f61bb 252 PANTHER PTHR10882 6 37 6.1E-35 T 23-04-2016 RPE_RS11190 4a551491894dff44d4f210bbde7f61bb 252 PANTHER PTHR10882 61 185 6.1E-35 T 23-04-2016 RPE_RS11190 4a551491894dff44d4f210bbde7f61bb 252 PIRSF PIRSF036525 4 252 1.8E-112 T 23-04-2016 IPR012797 Cobalamin (vitamin B12) biosynthesis CobF, precorrin-6A synthase GO:0009236|GO:0043819 KEGG: 00860+2.1.1.152|MetaCyc: PWY-7376|UniPathway: UPA00148 RPE_RS17355 f790329e030daa6ebdca38787379548f 251 SUPERFAMILY SSF74653 76 89 4.32E-10 T 23-04-2016 RPE_RS17355 f790329e030daa6ebdca38787379548f 251 SUPERFAMILY SSF74653 151 228 4.32E-10 T 23-04-2016 RPE_RS17355 f790329e030daa6ebdca38787379548f 251 Gene3D G3DSA:3.30.1150.10 146 224 1.7E-8 T 23-04-2016 RPE_RS15435 393743d41056162ade8d6db517867aef 110 SUPERFAMILY SSF81296 5 106 9.24E-32 T 23-04-2016 IPR014756 Immunoglobulin E-set RPE_RS15435 393743d41056162ade8d6db517867aef 110 Pfam PF08770 Sulphur oxidation protein SoxZ 14 100 3.3E-30 T 23-04-2016 IPR014880 Sulphur oxidation protein SoxZ RPE_RS15435 393743d41056162ade8d6db517867aef 110 TIGRFAM TIGR04490 SoxZ_true: thiosulfate oxidation carrier complex protein SoxZ 10 102 8.8E-31 T 23-04-2016 IPR030995 Thiosulfate oxidation carrier complex protein SoxZ RPE_RS15435 393743d41056162ade8d6db517867aef 110 Gene3D G3DSA:2.60.40.10 6 108 1.5E-34 T 23-04-2016 IPR013783 Immunoglobulin-like fold RPE_RS01785 e3ed6739a09ba9dad74fffc309dbbab9 401 Gene3D G3DSA:3.40.50.2300 297 379 5.6E-29 T 23-04-2016 RPE_RS01785 e3ed6739a09ba9dad74fffc309dbbab9 401 Gene3D G3DSA:3.40.50.2300 66 174 5.6E-29 T 23-04-2016 RPE_RS01785 e3ed6739a09ba9dad74fffc309dbbab9 401 Gene3D G3DSA:3.40.50.2300 176 256 4.4E-7 T 23-04-2016 RPE_RS01785 e3ed6739a09ba9dad74fffc309dbbab9 401 PANTHER PTHR30483:SF7 67 387 3.8E-86 T 23-04-2016 RPE_RS01785 e3ed6739a09ba9dad74fffc309dbbab9 401 SUPERFAMILY SSF53822 67 390 1.59E-61 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RPE_RS01785 e3ed6739a09ba9dad74fffc309dbbab9 401 Pfam PF13458 Periplasmic binding protein 67 387 1.2E-34 T 23-04-2016 IPR028081 Leucine-binding protein domain RPE_RS01785 e3ed6739a09ba9dad74fffc309dbbab9 401 PANTHER PTHR30483 67 387 3.8E-86 T 23-04-2016 RPE_RS16785 14a5f2303d63f046f34af903146a236e 273 Pfam PF02548 Ketopantoate hydroxymethyltransferase 12 263 4.6E-103 T 23-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 RPE_RS16785 14a5f2303d63f046f34af903146a236e 273 PANTHER PTHR20881 4 272 5.8E-142 T 23-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 RPE_RS16785 14a5f2303d63f046f34af903146a236e 273 Gene3D G3DSA:3.20.20.60 8 268 8.0E-109 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RPE_RS16785 14a5f2303d63f046f34af903146a236e 273 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 10 268 40.469 T 23-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 RPE_RS16785 14a5f2303d63f046f34af903146a236e 273 SUPERFAMILY SSF51621 11 268 7.85E-97 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RPE_RS16785 14a5f2303d63f046f34af903146a236e 273 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 17 268 8.9E-89 T 23-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 RPE_RS16785 14a5f2303d63f046f34af903146a236e 273 PIRSF PIRSF000388 1 271 7.2E-104 T 23-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 RPE_RS07415 e1201aad63de22be29077bd16376a2f7 293 Pfam PF02470 MlaD protein 47 113 5.5E-9 T 23-04-2016 IPR003399 Mce/MlaD RPE_RS07415 e1201aad63de22be29077bd16376a2f7 293 PANTHER PTHR36698 2 265 6.6E-85 T 23-04-2016 RPE_RS07415 e1201aad63de22be29077bd16376a2f7 293 PANTHER PTHR36698:SF2 2 265 6.6E-85 T 23-04-2016 RPE_RS20405 21edd59dbce654c0b3a89a4f57e7ad72 382 Pfam PF00005 ABC transporter 36 177 1.8E-35 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS20405 21edd59dbce654c0b3a89a4f57e7ad72 382 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 50 380 3.1E-117 T 23-04-2016 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 RPE_RS20405 21edd59dbce654c0b3a89a4f57e7ad72 382 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS20405 21edd59dbce654c0b3a89a4f57e7ad72 382 SUPERFAMILY SSF50331 252 380 7.14E-18 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RPE_RS20405 21edd59dbce654c0b3a89a4f57e7ad72 382 PANTHER PTHR24220 21 325 1.3E-158 T 23-04-2016 RPE_RS20405 21edd59dbce654c0b3a89a4f57e7ad72 382 SMART SM00382 44 227 1.0E-19 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS20405 21edd59dbce654c0b3a89a4f57e7ad72 382 PANTHER PTHR24220:SF481 21 325 1.3E-158 T 23-04-2016 RPE_RS20405 21edd59dbce654c0b3a89a4f57e7ad72 382 Pfam PF08402 TOBE domain 294 380 4.8E-15 T 23-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 RPE_RS20405 21edd59dbce654c0b3a89a4f57e7ad72 382 Gene3D G3DSA:3.40.50.300 18 249 1.7E-81 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS20405 21edd59dbce654c0b3a89a4f57e7ad72 382 SUPERFAMILY SSF52540 19 256 9.08E-87 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02185 bc635f66f1fc78ba98ba6782e8e394dc 141 PANTHER PTHR11527 13 139 1.6E-24 T 23-04-2016 IPR031107 Small heat shock protein HSP20 RPE_RS02185 bc635f66f1fc78ba98ba6782e8e394dc 141 Gene3D G3DSA:2.60.40.790 46 138 1.6E-13 T 23-04-2016 IPR008978 HSP20-like chaperone RPE_RS02185 bc635f66f1fc78ba98ba6782e8e394dc 141 Pfam PF00011 Hsp20/alpha crystallin family 47 137 4.9E-16 T 23-04-2016 IPR002068 Alpha crystallin/Hsp20 domain RPE_RS02185 bc635f66f1fc78ba98ba6782e8e394dc 141 PANTHER PTHR11527:SF127 13 139 1.6E-24 T 23-04-2016 RPE_RS02185 bc635f66f1fc78ba98ba6782e8e394dc 141 SUPERFAMILY SSF49764 32 137 1.33E-17 T 23-04-2016 IPR008978 HSP20-like chaperone RPE_RS06735 2a235c7743809000bc7b5ed1d381979f 449 SUPERFAMILY SSF103473 22 427 1.06E-25 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS06735 2a235c7743809000bc7b5ed1d381979f 449 Gene3D G3DSA:1.20.1250.20 227 427 2.3E-5 T 23-04-2016 RPE_RS06735 2a235c7743809000bc7b5ed1d381979f 449 Gene3D G3DSA:1.20.1250.20 11 192 4.4E-8 T 23-04-2016 RPE_RS06735 2a235c7743809000bc7b5ed1d381979f 449 PANTHER PTHR23538 1 445 4.1E-52 T 23-04-2016 RPE_RS06735 2a235c7743809000bc7b5ed1d381979f 449 Pfam PF03209 PUCC protein 29 426 3.4E-97 T 23-04-2016 IPR004896 PucC-related RPE_RS06735 2a235c7743809000bc7b5ed1d381979f 449 PIRSF PIRSF016565 1 443 5.4E-138 T 23-04-2016 IPR026036 PucC protein RPE_RS12470 d8f8792bd03afa2c537a2a13753a9012 355 Pfam PF14022 Protein of unknown function (DUF4238) 57 322 3.1E-26 T 23-04-2016 IPR025332 Protein of unknown function DUF4238 RPE_RS14720 17a7808ce77577980aa6ae1df491b5b7 350 TIGRFAM TIGR00462 genX: EF-P lysine aminoacylase GenX 23 343 2.8E-113 T 23-04-2016 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 RPE_RS14720 17a7808ce77577980aa6ae1df491b5b7 350 PANTHER PTHR22594:SF7 15 342 1.0E-116 T 23-04-2016 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 RPE_RS14720 17a7808ce77577980aa6ae1df491b5b7 350 Gene3D G3DSA:3.30.930.10 15 345 7.3E-61 T 23-04-2016 RPE_RS14720 17a7808ce77577980aa6ae1df491b5b7 350 Pfam PF00152 tRNA synthetases class II (D, K and N) 20 343 1.8E-32 T 23-04-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS14720 17a7808ce77577980aa6ae1df491b5b7 350 PANTHER PTHR22594 15 342 1.0E-116 T 23-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS14720 17a7808ce77577980aa6ae1df491b5b7 350 PRINTS PR00982 Lysyl-tRNA synthetase signature 87 100 3.2E-7 T 23-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 RPE_RS14720 17a7808ce77577980aa6ae1df491b5b7 350 PRINTS PR00982 Lysyl-tRNA synthetase signature 38 48 3.2E-7 T 23-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 RPE_RS14720 17a7808ce77577980aa6ae1df491b5b7 350 PRINTS PR00982 Lysyl-tRNA synthetase signature 105 122 3.2E-7 T 23-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 RPE_RS14720 17a7808ce77577980aa6ae1df491b5b7 350 PRINTS PR00982 Lysyl-tRNA synthetase signature 233 249 3.2E-7 T 23-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 RPE_RS14720 17a7808ce77577980aa6ae1df491b5b7 350 SUPERFAMILY SSF55681 15 345 3.78E-67 T 23-04-2016 RPE_RS14465 74d7b38f745a7fd20afc4c3e77f04d9a 560 SMART SM00304 209 262 0.0081 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS14465 74d7b38f745a7fd20afc4c3e77f04d9a 560 Pfam PF00672 HAMP domain 190 256 3.7E-8 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS14465 74d7b38f745a7fd20afc4c3e77f04d9a 560 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 360 553 9.5E-36 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS14465 74d7b38f745a7fd20afc4c3e77f04d9a 560 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 475 504 8.7E-23 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS14465 74d7b38f745a7fd20afc4c3e77f04d9a 560 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 398 425 8.7E-23 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS14465 74d7b38f745a7fd20afc4c3e77f04d9a 560 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 427 456 8.7E-23 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS14465 74d7b38f745a7fd20afc4c3e77f04d9a 560 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 3 28 8.7E-23 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS14465 74d7b38f745a7fd20afc4c3e77f04d9a 560 PANTHER PTHR32089:SF40 145 244 3.0E-194 T 23-04-2016 RPE_RS14465 74d7b38f745a7fd20afc4c3e77f04d9a 560 SUPERFAMILY SSF58104 306 553 1.57E-64 T 23-04-2016 RPE_RS14465 74d7b38f745a7fd20afc4c3e77f04d9a 560 SUPERFAMILY SSF58104 229 264 1.57E-64 T 23-04-2016 RPE_RS14465 74d7b38f745a7fd20afc4c3e77f04d9a 560 PANTHER PTHR32089 278 557 3.0E-194 T 23-04-2016 RPE_RS14465 74d7b38f745a7fd20afc4c3e77f04d9a 560 Gene3D G3DSA:1.10.287.950 317 524 9.6E-48 T 23-04-2016 RPE_RS14465 74d7b38f745a7fd20afc4c3e77f04d9a 560 Pfam PF12729 Four helix bundle sensory module for signal transduction 3 182 7.2E-27 T 23-04-2016 IPR024478 4HB MCP domain RPE_RS14465 74d7b38f745a7fd20afc4c3e77f04d9a 560 PANTHER PTHR32089:SF40 278 557 3.0E-194 T 23-04-2016 RPE_RS14465 74d7b38f745a7fd20afc4c3e77f04d9a 560 SMART SM00283 296 554 1.0E-46 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS14465 74d7b38f745a7fd20afc4c3e77f04d9a 560 PANTHER PTHR32089 145 244 3.0E-194 T 23-04-2016 RPE_RS20780 22fa74eab14fc47fb471d768a56d64e2 451 PANTHER PTHR37957 1 448 9.3E-151 T 23-04-2016 RPE_RS20780 22fa74eab14fc47fb471d768a56d64e2 451 Pfam PF13449 Esterase-like activity of phytase 89 422 3.2E-61 T 23-04-2016 IPR027372 Phytase-like domain RPE_RS22590 df825f28b24d2a8bc23974b5cde07617 106 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 2 105 4.9E-36 T 23-04-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 RPE_RS22590 df825f28b24d2a8bc23974b5cde07617 106 SUPERFAMILY SSF89360 1 95 3.73E-27 T 23-04-2016 IPR000361 FeS cluster biogenesis RPE_RS22590 df825f28b24d2a8bc23974b5cde07617 106 Gene3D G3DSA:2.60.300.12 1 95 4.7E-28 T 23-04-2016 IPR000361 FeS cluster biogenesis RPE_RS22590 df825f28b24d2a8bc23974b5cde07617 106 Pfam PF01521 Iron-sulphur cluster biosynthesis 2 103 8.9E-22 T 23-04-2016 IPR000361 FeS cluster biogenesis RPE_RS22590 df825f28b24d2a8bc23974b5cde07617 106 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 88 105 - T 23-04-2016 IPR017870 FeS cluster insertion, C-terminal, conserved site RPE_RS22590 df825f28b24d2a8bc23974b5cde07617 106 PANTHER PTHR10072 1 105 1.7E-36 T 23-04-2016 RPE_RS02935 46d5fbf53fd9ba99d1f18ac5cc80cac7 241 PANTHER PTHR24567 10 241 2.1E-31 T 23-04-2016 RPE_RS02935 46d5fbf53fd9ba99d1f18ac5cc80cac7 241 SMART SM00100 18 136 7.1E-18 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RPE_RS02935 46d5fbf53fd9ba99d1f18ac5cc80cac7 241 Gene3D G3DSA:1.10.10.10 156 226 7.1E-8 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS02935 46d5fbf53fd9ba99d1f18ac5cc80cac7 241 SUPERFAMILY SSF46785 155 226 1.12E-6 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS02935 46d5fbf53fd9ba99d1f18ac5cc80cac7 241 Pfam PF13545 Crp-like helix-turn-helix domain 156 225 6.3E-12 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RPE_RS02935 46d5fbf53fd9ba99d1f18ac5cc80cac7 241 Gene3D G3DSA:2.60.120.10 15 149 6.9E-27 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS02935 46d5fbf53fd9ba99d1f18ac5cc80cac7 241 SMART SM00419 171 218 2.3E-4 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RPE_RS02935 46d5fbf53fd9ba99d1f18ac5cc80cac7 241 Pfam PF00027 Cyclic nucleotide-binding domain 39 123 1.3E-15 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RPE_RS02935 46d5fbf53fd9ba99d1f18ac5cc80cac7 241 SUPERFAMILY SSF51206 12 149 8.64E-29 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like RPE_RS00635 76f7d3007df8c38d2a40674bcd1d8778 89 SMART SM00363 4 66 4.1E-11 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RPE_RS00635 76f7d3007df8c38d2a40674bcd1d8778 89 Pfam PF01479 S4 domain 4 51 3.2E-12 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RPE_RS00635 76f7d3007df8c38d2a40674bcd1d8778 89 SUPERFAMILY SSF55174 3 85 3.06E-21 T 23-04-2016 RPE_RS00635 76f7d3007df8c38d2a40674bcd1d8778 89 Gene3D G3DSA:3.10.290.10 2 84 7.3E-24 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RPE_RS14335 2fcf8b1723a99174daca296b0623e2f7 426 SUPERFAMILY SSF53383 7 424 3.16E-125 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS14335 2fcf8b1723a99174daca296b0623e2f7 426 PANTHER PTHR11808 268 426 3.4E-219 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RPE_RS14335 2fcf8b1723a99174daca296b0623e2f7 426 PANTHER PTHR11808 1 238 3.4E-219 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RPE_RS14335 2fcf8b1723a99174daca296b0623e2f7 426 Gene3D G3DSA:3.90.1150.10 291 425 1.1E-48 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS14335 2fcf8b1723a99174daca296b0623e2f7 426 Gene3D G3DSA:3.40.640.10 7 289 4.6E-114 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS14335 2fcf8b1723a99174daca296b0623e2f7 426 PIRSF PIRSF001434 1 426 1.2E-123 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RPE_RS14335 2fcf8b1723a99174daca296b0623e2f7 426 PANTHER PTHR11808:SF12 268 426 3.4E-219 T 23-04-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 RPE_RS14335 2fcf8b1723a99174daca296b0623e2f7 426 PANTHER PTHR11808:SF12 1 238 3.4E-219 T 23-04-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 RPE_RS14335 2fcf8b1723a99174daca296b0623e2f7 426 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 201 215 - T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RPE_RS14335 2fcf8b1723a99174daca296b0623e2f7 426 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 9 424 1.1E-134 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RPE_RS14335 2fcf8b1723a99174daca296b0623e2f7 426 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 8 424 1.8E-186 T 23-04-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 RPE_RS23265 08f0d8522afb1f78b9e7c17f7c06e23e 330 PANTHER PTHR39339 9 329 2.1E-14 T 23-04-2016 RPE_RS23265 08f0d8522afb1f78b9e7c17f7c06e23e 330 Pfam PF05235 CHAD domain 58 282 1.7E-41 T 23-04-2016 IPR007899 CHAD domain RPE_RS23265 08f0d8522afb1f78b9e7c17f7c06e23e 330 SMART SM00880 54 318 1.9E-62 T 23-04-2016 IPR007899 CHAD domain RPE_RS23265 08f0d8522afb1f78b9e7c17f7c06e23e 330 PANTHER PTHR39339:SF1 9 329 2.1E-14 T 23-04-2016 RPE_RS21200 8b31b364ccfea507755aab5acf7395b1 190 SUPERFAMILY SSF53335 28 160 1.19E-15 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS21200 8b31b364ccfea507755aab5acf7395b1 190 Gene3D G3DSA:3.40.50.150 34 158 2.2E-7 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS21200 8b31b364ccfea507755aab5acf7395b1 190 Pfam PF13578 Methyltransferase domain 41 136 9.8E-14 T 23-04-2016 RPE_RS21015 5a4a58f2e153a502ccf2811e5153c95a 436 PIRSF PIRSF500134 1 436 3.1E-180 T 23-04-2016 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00500+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|UniPathway: UPA00038 RPE_RS21015 5a4a58f2e153a502ccf2811e5153c95a 436 SUPERFAMILY SSF52413 303 428 1.31E-38 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 RPE_RS21015 5a4a58f2e153a502ccf2811e5153c95a 436 Gene3D G3DSA:3.40.50.720 232 434 6.9E-78 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS21015 5a4a58f2e153a502ccf2811e5153c95a 436 SMART SM00984 317 418 3.2E-51 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 RPE_RS21015 5a4a58f2e153a502ccf2811e5153c95a 436 SUPERFAMILY SSF51735 1 188 3.11E-54 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS21015 5a4a58f2e153a502ccf2811e5153c95a 436 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 414 6.8E-138 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 RPE_RS21015 5a4a58f2e153a502ccf2811e5153c95a 436 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 317 417 1.3E-31 T 23-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 RPE_RS21015 5a4a58f2e153a502ccf2811e5153c95a 436 PIRSF PIRSF000124 1 433 5.9E-142 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 RPE_RS21015 5a4a58f2e153a502ccf2811e5153c95a 436 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 181 7.6E-67 T 23-04-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 RPE_RS21015 5a4a58f2e153a502ccf2811e5153c95a 436 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 201 293 1.7E-38 T 23-04-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 RPE_RS21015 5a4a58f2e153a502ccf2811e5153c95a 436 PANTHER PTHR11374:SF18 1 436 1.1E-238 T 23-04-2016 RPE_RS21015 5a4a58f2e153a502ccf2811e5153c95a 436 PANTHER PTHR11374 1 436 1.1E-238 T 23-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 RPE_RS21015 5a4a58f2e153a502ccf2811e5153c95a 436 Gene3D G3DSA:3.40.50.720 1 204 1.6E-72 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS21015 5a4a58f2e153a502ccf2811e5153c95a 436 Gene3D G3DSA:1.20.5.100 205 231 4.0E-19 T 23-04-2016 RPE_RS21015 5a4a58f2e153a502ccf2811e5153c95a 436 SUPERFAMILY SSF48179 201 294 4.42E-34 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RPE_RS00105 2f4f4e2fd62bdb54a37ced19a78bfed9 222 PANTHER PTHR11260:SF282 1 219 1.9E-118 T 23-04-2016 RPE_RS00105 2f4f4e2fd62bdb54a37ced19a78bfed9 222 SUPERFAMILY SSF47616 80 217 1.2E-22 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RPE_RS00105 2f4f4e2fd62bdb54a37ced19a78bfed9 222 PANTHER PTHR11260 1 219 1.9E-118 T 23-04-2016 RPE_RS00105 2f4f4e2fd62bdb54a37ced19a78bfed9 222 Gene3D G3DSA:3.40.30.10 2 89 8.5E-21 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS00105 2f4f4e2fd62bdb54a37ced19a78bfed9 222 Pfam PF02798 Glutathione S-transferase, N-terminal domain 4 72 4.2E-15 T 23-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RPE_RS00105 2f4f4e2fd62bdb54a37ced19a78bfed9 222 SUPERFAMILY SSF52833 1 83 2.79E-20 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS00105 2f4f4e2fd62bdb54a37ced19a78bfed9 222 Gene3D G3DSA:1.20.1050.10 90 211 2.8E-21 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RPE_RS00105 2f4f4e2fd62bdb54a37ced19a78bfed9 222 Pfam PF00043 Glutathione S-transferase, C-terminal domain 117 205 1.1E-7 T 23-04-2016 IPR004046 Glutathione S-transferase, C-terminal RPE_RS16460 07f8d81eca6f9a01f40d0cadb7d4cfe7 224 Pfam PF00308 Bacterial dnaA protein 106 202 2.8E-6 T 23-04-2016 IPR013317 Chromosomal replication initiator protein DnaA RPE_RS16460 07f8d81eca6f9a01f40d0cadb7d4cfe7 224 PANTHER PTHR30050:SF5 5 223 5.2E-56 T 23-04-2016 RPE_RS16460 07f8d81eca6f9a01f40d0cadb7d4cfe7 224 Gene3D G3DSA:3.40.50.300 5 152 6.8E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16460 07f8d81eca6f9a01f40d0cadb7d4cfe7 224 SUPERFAMILY SSF52540 19 201 3.55E-16 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16460 07f8d81eca6f9a01f40d0cadb7d4cfe7 224 PANTHER PTHR30050 5 223 5.2E-56 T 23-04-2016 RPE_RS16460 07f8d81eca6f9a01f40d0cadb7d4cfe7 224 Gene3D G3DSA:1.10.8.60 160 221 7.8E-8 T 23-04-2016 RPE_RS16920 63e289997c42f347c33048c385d71f01 372 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 81 290 2.0E-64 T 23-04-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 RPE_RS16920 63e289997c42f347c33048c385d71f01 372 PANTHER PTHR32039:SF8 19 369 5.7E-103 T 23-04-2016 RPE_RS16920 63e289997c42f347c33048c385d71f01 372 PANTHER PTHR32039 19 369 5.7E-103 T 23-04-2016 RPE_RS16920 63e289997c42f347c33048c385d71f01 372 SUPERFAMILY SSF102405 88 290 5.04E-41 T 23-04-2016 RPE_RS16920 63e289997c42f347c33048c385d71f01 372 Pfam PF02481 DNA recombination-mediator protein A 80 282 3.7E-71 T 23-04-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 RPE_RS16920 63e289997c42f347c33048c385d71f01 372 Gene3D G3DSA:3.40.50.450 117 280 3.6E-10 T 23-04-2016 RPE_RS06430 3eaaa159485c5c5fbb83dc91e8e5e006 604 Gene3D G3DSA:2.60.40.10 17 98 1.5E-27 T 23-04-2016 IPR013783 Immunoglobulin-like fold RPE_RS06430 3eaaa159485c5c5fbb83dc91e8e5e006 604 TIGRFAM TIGR02402 trehalose_TreZ: malto-oligosyltrehalose trehalohydrolase 23 568 2.6E-221 T 23-04-2016 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00520+3.2.1.14|MetaCyc: PWY-2661|MetaCyc: PWY-6902|UniPathway: UPA00299 RPE_RS06430 3eaaa159485c5c5fbb83dc91e8e5e006 604 Pfam PF11941 Domain of unknown function (DUF3459) 512 597 4.4E-14 T 23-04-2016 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) RPE_RS06430 3eaaa159485c5c5fbb83dc91e8e5e006 604 SUPERFAMILY SSF81296 13 99 1.88E-20 T 23-04-2016 IPR014756 Immunoglobulin E-set RPE_RS06430 3eaaa159485c5c5fbb83dc91e8e5e006 604 PANTHER PTHR10357:SF110 505 567 2.6E-114 T 23-04-2016 RPE_RS06430 3eaaa159485c5c5fbb83dc91e8e5e006 604 PANTHER PTHR10357:SF110 3 478 2.6E-114 T 23-04-2016 RPE_RS06430 3eaaa159485c5c5fbb83dc91e8e5e006 604 Pfam PF00128 Alpha amylase, catalytic domain 134 216 1.2E-16 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RPE_RS06430 3eaaa159485c5c5fbb83dc91e8e5e006 604 SUPERFAMILY SSF51445 95 522 7.31E-110 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RPE_RS06430 3eaaa159485c5c5fbb83dc91e8e5e006 604 PANTHER PTHR10357 505 567 2.6E-114 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RPE_RS06430 3eaaa159485c5c5fbb83dc91e8e5e006 604 PANTHER PTHR10357 3 478 2.6E-114 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RPE_RS06430 3eaaa159485c5c5fbb83dc91e8e5e006 604 Gene3D G3DSA:3.20.20.80 112 445 3.9E-80 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RPE_RS06430 3eaaa159485c5c5fbb83dc91e8e5e006 604 Gene3D G3DSA:3.20.20.80 492 522 3.9E-80 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RPE_RS06430 3eaaa159485c5c5fbb83dc91e8e5e006 604 SMART SM00642 120 464 7.3E-10 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RPE_RS06430 3eaaa159485c5c5fbb83dc91e8e5e006 604 PIRSF PIRSF006337 9 598 6.2E-226 T 23-04-2016 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00520+3.2.1.14|MetaCyc: PWY-2661|MetaCyc: PWY-6902|UniPathway: UPA00299 RPE_RS10600 199414390f6597efa4db9feef0b399da 393 SUPERFAMILY SSF53756 23 372 4.32E-74 T 23-04-2016 RPE_RS10600 199414390f6597efa4db9feef0b399da 393 Pfam PF00534 Glycosyl transferases group 1 188 352 2.1E-30 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 RPE_RS10600 199414390f6597efa4db9feef0b399da 393 PANTHER PTHR12526 20 382 8.9E-63 T 23-04-2016 RPE_RS10600 199414390f6597efa4db9feef0b399da 393 Pfam PF13439 Glycosyltransferase Family 4 33 176 2.3E-19 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RPE_RS10600 199414390f6597efa4db9feef0b399da 393 Gene3D G3DSA:3.40.50.2000 166 352 5.2E-27 T 23-04-2016 RPE_RS06685 35e15ab3991b5fa3251e4329abea1aa4 312 Gene3D G3DSA:3.90.180.10 4 164 6.6E-20 T 23-04-2016 IPR011032 GroES-like RPE_RS06685 35e15ab3991b5fa3251e4329abea1aa4 312 SUPERFAMILY SSF51735 125 274 1.03E-10 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS06685 35e15ab3991b5fa3251e4329abea1aa4 312 SUPERFAMILY SSF50129 5 154 1.1E-24 T 23-04-2016 IPR011032 GroES-like RPE_RS06685 35e15ab3991b5fa3251e4329abea1aa4 312 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 92 8.1E-6 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RPE_RS06685 35e15ab3991b5fa3251e4329abea1aa4 312 PANTHER PTHR11695 14 308 3.8E-23 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RPE_RS06685 35e15ab3991b5fa3251e4329abea1aa4 312 Gene3D G3DSA:3.40.50.720 165 252 1.1E-6 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS06685 35e15ab3991b5fa3251e4329abea1aa4 312 PANTHER PTHR11695:SF38 14 308 3.8E-23 T 23-04-2016 RPE_RS06685 35e15ab3991b5fa3251e4329abea1aa4 312 TIGRFAM TIGR01202 bchC: chlorophyll synthesis pathway protein BchC 3 308 1.4E-136 T 23-04-2016 IPR005903 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide a dehydrogenase GO:0016491|GO:0030494|GO:0036354|GO:0055114 KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.-|UniPathway: UPA00671 RPE_RS02755 8bd6c934edea806dda68b45130860894 377 Pfam PF00696 Amino acid kinase family 11 241 2.8E-44 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RPE_RS02755 8bd6c934edea806dda68b45130860894 377 SMART SM00359 282 364 3.9E-14 T 23-04-2016 IPR002478 PUA domain GO:0003723 RPE_RS02755 8bd6c934edea806dda68b45130860894 377 PRINTS PR00474 Glutamate 5-kinase family signature 154 181 2.7E-47 T 23-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RPE_RS02755 8bd6c934edea806dda68b45130860894 377 PRINTS PR00474 Glutamate 5-kinase family signature 122 143 2.7E-47 T 23-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RPE_RS02755 8bd6c934edea806dda68b45130860894 377 PRINTS PR00474 Glutamate 5-kinase family signature 215 235 2.7E-47 T 23-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RPE_RS02755 8bd6c934edea806dda68b45130860894 377 PRINTS PR00474 Glutamate 5-kinase family signature 48 62 2.7E-47 T 23-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RPE_RS02755 8bd6c934edea806dda68b45130860894 377 PRINTS PR00474 Glutamate 5-kinase family signature 82 110 2.7E-47 T 23-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RPE_RS02755 8bd6c934edea806dda68b45130860894 377 Gene3D G3DSA:2.30.130.10 279 370 2.4E-27 T 23-04-2016 IPR015947 PUA-like domain RPE_RS02755 8bd6c934edea806dda68b45130860894 377 SUPERFAMILY SSF53633 10 260 4.58E-63 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RPE_RS02755 8bd6c934edea806dda68b45130860894 377 PANTHER PTHR11063:SF6 10 374 1.8E-112 T 23-04-2016 RPE_RS02755 8bd6c934edea806dda68b45130860894 377 PIRSF PIRSF000729 5 373 2.6E-119 T 23-04-2016 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 RPE_RS02755 8bd6c934edea806dda68b45130860894 377 ProSitePatterns PS00902 Glutamate 5-kinase signature. 213 230 - T 23-04-2016 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 RPE_RS02755 8bd6c934edea806dda68b45130860894 377 SUPERFAMILY SSF88697 281 371 7.18E-23 T 23-04-2016 IPR015947 PUA-like domain RPE_RS02755 8bd6c934edea806dda68b45130860894 377 PANTHER PTHR11063 10 374 1.8E-112 T 23-04-2016 RPE_RS02755 8bd6c934edea806dda68b45130860894 377 Pfam PF01472 PUA domain 282 351 6.0E-21 T 23-04-2016 IPR002478 PUA domain GO:0003723 RPE_RS02755 8bd6c934edea806dda68b45130860894 377 Hamap MF_00456 Glutamate 5-kinase [proB]. 10 263 34.663 T 23-04-2016 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 RPE_RS02755 8bd6c934edea806dda68b45130860894 377 TIGRFAM TIGR01027 proB: glutamate 5-kinase 10 371 2.5E-118 T 23-04-2016 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 RPE_RS02755 8bd6c934edea806dda68b45130860894 377 Gene3D G3DSA:3.40.1160.10 10 260 7.7E-53 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RPE_RS18065 3818134c0295ef17ddd2ba9b658b2f8a 142 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 4.4E-64 T 23-04-2016 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 RPE_RS18065 3818134c0295ef17ddd2ba9b658b2f8a 142 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 30.064 T 23-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 RPE_RS18065 3818134c0295ef17ddd2ba9b658b2f8a 142 SUPERFAMILY SSF46906 68 141 1.03E-24 T 23-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 RPE_RS18065 3818134c0295ef17ddd2ba9b658b2f8a 142 ProSitePatterns PS00359 Ribosomal protein L11 signature. 127 142 - T 23-04-2016 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 RPE_RS18065 3818134c0295ef17ddd2ba9b658b2f8a 142 Gene3D G3DSA:3.30.1550.10 2 72 9.5E-37 T 23-04-2016 IPR020784 Ribosomal protein L11, N-terminal RPE_RS18065 3818134c0295ef17ddd2ba9b658b2f8a 142 SMART SM00649 9 141 2.8E-78 T 23-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 RPE_RS18065 3818134c0295ef17ddd2ba9b658b2f8a 142 Gene3D G3DSA:1.10.10.250 73 141 2.5E-29 T 23-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 RPE_RS18065 3818134c0295ef17ddd2ba9b658b2f8a 142 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 6.4E-23 T 23-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 RPE_RS18065 3818134c0295ef17ddd2ba9b658b2f8a 142 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 74 5.0E-17 T 23-04-2016 RPE_RS18065 3818134c0295ef17ddd2ba9b658b2f8a 142 Pfam PF03946 Ribosomal protein L11, N-terminal domain 10 67 2.4E-29 T 23-04-2016 IPR020784 Ribosomal protein L11, N-terminal RPE_RS18065 3818134c0295ef17ddd2ba9b658b2f8a 142 PANTHER PTHR11661 1 142 8.5E-68 T 23-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 RPE_RS18065 3818134c0295ef17ddd2ba9b658b2f8a 142 SUPERFAMILY SSF54747 3 73 1.01E-29 T 23-04-2016 IPR020784 Ribosomal protein L11, N-terminal RPE_RS18615 64a2ebf539a9ef678c93a63d7f1195e5 692 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 6 688 0.0 T 23-04-2016 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 UniPathway: UPA00165 RPE_RS18615 64a2ebf539a9ef678c93a63d7f1195e5 692 PANTHER PTHR10357:SF74 1 582 2.6E-289 T 23-04-2016 RPE_RS18615 64a2ebf539a9ef678c93a63d7f1195e5 692 PANTHER PTHR10357:SF74 607 661 2.6E-289 T 23-04-2016 RPE_RS18615 64a2ebf539a9ef678c93a63d7f1195e5 692 Gene3D G3DSA:2.60.40.10 6 160 3.9E-52 T 23-04-2016 IPR013783 Immunoglobulin-like fold RPE_RS18615 64a2ebf539a9ef678c93a63d7f1195e5 692 SUPERFAMILY SSF51011 590 688 7.19E-18 T 23-04-2016 RPE_RS18615 64a2ebf539a9ef678c93a63d7f1195e5 692 SMART SM00642 172 571 3.1E-8 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RPE_RS18615 64a2ebf539a9ef678c93a63d7f1195e5 692 PANTHER PTHR10357 1 582 2.6E-289 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RPE_RS18615 64a2ebf539a9ef678c93a63d7f1195e5 692 PANTHER PTHR10357 607 661 2.6E-289 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RPE_RS18615 64a2ebf539a9ef678c93a63d7f1195e5 692 Gene3D G3DSA:3.20.20.80 161 579 1.2E-104 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RPE_RS18615 64a2ebf539a9ef678c93a63d7f1195e5 692 SUPERFAMILY SSF81296 6 144 2.52E-43 T 23-04-2016 IPR014756 Immunoglobulin E-set RPE_RS18615 64a2ebf539a9ef678c93a63d7f1195e5 692 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 11 98 2.5E-18 T 23-04-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 RPE_RS18615 64a2ebf539a9ef678c93a63d7f1195e5 692 Gene3D G3DSA:2.60.40.1180 594 687 1.6E-16 T 23-04-2016 IPR013780 Glycosyl hydrolase, all-beta RPE_RS18615 64a2ebf539a9ef678c93a63d7f1195e5 692 SUPERFAMILY SSF51445 502 578 1.95E-116 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RPE_RS18615 64a2ebf539a9ef678c93a63d7f1195e5 692 SUPERFAMILY SSF51445 145 473 1.95E-116 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RPE_RS18615 64a2ebf539a9ef678c93a63d7f1195e5 692 Pfam PF00128 Alpha amylase, catalytic domain 194 288 1.1E-6 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RPE_RS18615 64a2ebf539a9ef678c93a63d7f1195e5 692 Pfam PF00128 Alpha amylase, catalytic domain 305 532 6.7E-5 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RPE_RS12035 87f3291d32819b6c62a4faf10648bd18 503 Gene3D G3DSA:2.40.440.10 88 202 3.5E-20 T 23-04-2016 RPE_RS12035 87f3291d32819b6c62a4faf10648bd18 503 PANTHER PTHR30582:SF2 73 234 1.4E-48 T 23-04-2016 RPE_RS12035 87f3291d32819b6c62a4faf10648bd18 503 PANTHER PTHR30582 73 234 1.4E-48 T 23-04-2016 RPE_RS12035 87f3291d32819b6c62a4faf10648bd18 503 Pfam PF03734 L,D-transpeptidase catalytic domain 94 201 2.4E-18 T 23-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 RPE_RS12035 87f3291d32819b6c62a4faf10648bd18 503 PIRSF PIRSF029342 24 501 2.6E-93 T 23-04-2016 IPR016915 Uncharacterised conserved protein UCP029342 RPE_RS12035 87f3291d32819b6c62a4faf10648bd18 503 SUPERFAMILY SSF141523 90 201 1.44E-28 T 23-04-2016 RPE_RS18990 b017731d1f4da90331a09e772d2d5766 247 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS18990 b017731d1f4da90331a09e772d2d5766 247 Pfam PF00005 ABC transporter 26 168 2.3E-25 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS18990 b017731d1f4da90331a09e772d2d5766 247 PANTHER PTHR24220:SF568 11 246 2.1E-108 T 23-04-2016 RPE_RS18990 b017731d1f4da90331a09e772d2d5766 247 SMART SM00382 34 217 3.4E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS18990 b017731d1f4da90331a09e772d2d5766 247 PANTHER PTHR24220 11 246 2.1E-108 T 23-04-2016 RPE_RS18990 b017731d1f4da90331a09e772d2d5766 247 SUPERFAMILY SSF52540 8 233 1.09E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18990 b017731d1f4da90331a09e772d2d5766 247 Gene3D G3DSA:3.40.50.300 8 235 3.3E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS03520 4f5c63cbca000203fe0af5a9010d7452 196 ProSitePatterns PS01081 TetR-type HTH domain signature. 32 62 - T 23-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RPE_RS03520 4f5c63cbca000203fe0af5a9010d7452 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 6.5E-11 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS03520 4f5c63cbca000203fe0af5a9010d7452 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 6.5E-11 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS03520 4f5c63cbca000203fe0af5a9010d7452 196 SUPERFAMILY SSF46689 6 87 3.28E-19 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS03520 4f5c63cbca000203fe0af5a9010d7452 196 PANTHER PTHR30328:SF3 5 192 2.8E-32 T 23-04-2016 RPE_RS03520 4f5c63cbca000203fe0af5a9010d7452 196 Gene3D G3DSA:1.10.357.10 4 192 6.5E-33 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RPE_RS03520 4f5c63cbca000203fe0af5a9010d7452 196 PANTHER PTHR30328 5 192 2.8E-32 T 23-04-2016 RPE_RS03520 4f5c63cbca000203fe0af5a9010d7452 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 66 1.0E-18 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS17480 c89603d8bde76f40fd4ea5a918ed776f 263 Gene3D G3DSA:2.40.50.100 128 189 3.0E-20 T 23-04-2016 RPE_RS17480 c89603d8bde76f40fd4ea5a918ed776f 263 SUPERFAMILY SSF50331 200 263 4.25E-13 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RPE_RS17480 c89603d8bde76f40fd4ea5a918ed776f 263 PANTHER PTHR30432 1 263 5.2E-38 T 23-04-2016 RPE_RS17480 c89603d8bde76f40fd4ea5a918ed776f 263 Gene3D G3DSA:1.10.10.10 5 127 3.3E-33 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS17480 c89603d8bde76f40fd4ea5a918ed776f 263 SUPERFAMILY SSF50331 124 192 6.07E-17 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RPE_RS17480 c89603d8bde76f40fd4ea5a918ed776f 263 Pfam PF03459 TOBE domain 200 260 6.7E-11 T 23-04-2016 IPR005116 Transport-associated OB, type 1 RPE_RS17480 c89603d8bde76f40fd4ea5a918ed776f 263 Pfam PF03459 TOBE domain 127 188 4.1E-12 T 23-04-2016 IPR005116 Transport-associated OB, type 1 RPE_RS17480 c89603d8bde76f40fd4ea5a918ed776f 263 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 125 191 5.3E-17 T 23-04-2016 IPR004606 Molybdenum-pterin binding GO:0006810|GO:0030151 RPE_RS17480 c89603d8bde76f40fd4ea5a918ed776f 263 Gene3D G3DSA:2.40.50.100 200 263 2.8E-17 T 23-04-2016 RPE_RS17480 c89603d8bde76f40fd4ea5a918ed776f 263 PIRSF PIRSF005763 3 263 3.0E-88 T 23-04-2016 IPR016462 Molybdate-dependent transcriptional regulator ModE GO:0006355|GO:0015689|GO:0030151 RPE_RS17480 c89603d8bde76f40fd4ea5a918ed776f 263 SUPERFAMILY SSF46785 5 106 3.7E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS17480 c89603d8bde76f40fd4ea5a918ed776f 263 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 23 86 2.3E-15 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS01675 0397fb2c647b490df5208406f5ce1c8c 328 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 55 283 2.9E-60 T 23-04-2016 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 RPE_RS01675 0397fb2c647b490df5208406f5ce1c8c 328 SUPERFAMILY SSF52402 31 236 4.19E-72 T 23-04-2016 RPE_RS01675 0397fb2c647b490df5208406f5ce1c8c 328 PANTHER PTHR23293 25 184 1.1E-86 T 23-04-2016 RPE_RS01675 0397fb2c647b490df5208406f5ce1c8c 328 PANTHER PTHR23293 204 237 1.1E-86 T 23-04-2016 RPE_RS01675 0397fb2c647b490df5208406f5ce1c8c 328 PANTHER PTHR23293 271 328 1.1E-86 T 23-04-2016 RPE_RS01675 0397fb2c647b490df5208406f5ce1c8c 328 PANTHER PTHR23293:SF6 25 184 1.1E-86 T 23-04-2016 RPE_RS01675 0397fb2c647b490df5208406f5ce1c8c 328 PANTHER PTHR23293:SF6 204 237 1.1E-86 T 23-04-2016 RPE_RS01675 0397fb2c647b490df5208406f5ce1c8c 328 PANTHER PTHR23293:SF6 271 328 1.1E-86 T 23-04-2016 RPE_RS01675 0397fb2c647b490df5208406f5ce1c8c 328 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 35 328 5.1E-152 T 23-04-2016 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 RPE_RS01675 0397fb2c647b490df5208406f5ce1c8c 328 PIRSF PIRSF002936 27 328 2.2E-147 T 23-04-2016 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 RPE_RS01675 0397fb2c647b490df5208406f5ce1c8c 328 Hamap MF_00064 Sulfate adenylyltransferase subunit 2 [cysD]. 30 328 56.364 T 23-04-2016 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 RPE_RS01675 0397fb2c647b490df5208406f5ce1c8c 328 Gene3D G3DSA:3.40.50.620 32 236 3.9E-59 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS01675 0397fb2c647b490df5208406f5ce1c8c 328 Gene3D G3DSA:3.40.50.620 270 279 3.9E-59 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS13005 dffa2c50a306b92dcf343c0c9e7d7cdd 253 SUPERFAMILY SSF51351 5 249 5.11E-84 T 23-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 RPE_RS13005 dffa2c50a306b92dcf343c0c9e7d7cdd 253 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 5 252 37.429 T 23-04-2016 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 RPE_RS13005 dffa2c50a306b92dcf343c0c9e7d7cdd 253 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 8 242 4.0E-54 T 23-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 RPE_RS13005 dffa2c50a306b92dcf343c0c9e7d7cdd 253 Pfam PF00121 Triosephosphate isomerase 8 248 2.7E-77 T 23-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 RPE_RS13005 dffa2c50a306b92dcf343c0c9e7d7cdd 253 ProSitePatterns PS00171 Triosephosphate isomerase active site. 168 178 - T 23-04-2016 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 RPE_RS13005 dffa2c50a306b92dcf343c0c9e7d7cdd 253 PANTHER PTHR21139 1 248 2.7E-100 T 23-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 RPE_RS13005 dffa2c50a306b92dcf343c0c9e7d7cdd 253 Gene3D G3DSA:3.20.20.70 6 249 5.7E-90 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS04115 adddb4825167e8084d70aba546ce9369 299 Gene3D G3DSA:1.10.601.10 16 119 6.3E-37 T 23-04-2016 RPE_RS04115 adddb4825167e8084d70aba546ce9369 299 PRINTS PR00046 Major sigma-70 factor signature 253 268 9.3E-21 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS04115 adddb4825167e8084d70aba546ce9369 299 PRINTS PR00046 Major sigma-70 factor signature 77 90 9.3E-21 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS04115 adddb4825167e8084d70aba546ce9369 299 PRINTS PR00046 Major sigma-70 factor signature 101 109 9.3E-21 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS04115 adddb4825167e8084d70aba546ce9369 299 PRINTS PR00046 Major sigma-70 factor signature 268 279 9.3E-21 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS04115 adddb4825167e8084d70aba546ce9369 299 PRINTS PR00046 Major sigma-70 factor signature 234 246 9.3E-21 T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS04115 adddb4825167e8084d70aba546ce9369 299 SUPERFAMILY SSF88946 13 121 2.49E-38 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS04115 adddb4825167e8084d70aba546ce9369 299 SUPERFAMILY SSF88659 192 285 5.23E-20 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS04115 adddb4825167e8084d70aba546ce9369 299 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 15 284 1.8E-113 T 23-04-2016 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 RPE_RS04115 adddb4825167e8084d70aba546ce9369 299 Pfam PF00140 Sigma-70 factor, region 1.2 17 46 1.2E-7 T 23-04-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS04115 adddb4825167e8084d70aba546ce9369 299 Gene3D G3DSA:1.10.10.10 226 283 3.2E-18 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS04115 adddb4825167e8084d70aba546ce9369 299 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 77 90 - T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS04115 adddb4825167e8084d70aba546ce9369 299 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 2 285 52.105 T 23-04-2016 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 RPE_RS04115 adddb4825167e8084d70aba546ce9369 299 PANTHER PTHR30376 2 293 3.4E-110 T 23-04-2016 RPE_RS04115 adddb4825167e8084d70aba546ce9369 299 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 48 281 1.1E-31 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS04115 adddb4825167e8084d70aba546ce9369 299 PIRSF PIRSF000770 6 295 1.6E-33 T 23-04-2016 IPR016263 RNA polymerase sporulation-specific sigma factor GO:0003677|GO:0006351|GO:0016987|GO:0030435 RPE_RS04115 adddb4825167e8084d70aba546ce9369 299 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 253 279 - T 23-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS04115 adddb4825167e8084d70aba546ce9369 299 Pfam PF04545 Sigma-70, region 4 230 280 3.0E-17 T 23-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS04115 adddb4825167e8084d70aba546ce9369 299 Pfam PF04542 Sigma-70 region 2 53 121 2.3E-16 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS04060 16db804e4f577fb470f496475b0c4e95 384 PANTHER PTHR12526 96 380 8.7E-51 T 23-04-2016 RPE_RS04060 16db804e4f577fb470f496475b0c4e95 384 Pfam PF13439 Glycosyltransferase Family 4 90 182 3.4E-8 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RPE_RS04060 16db804e4f577fb470f496475b0c4e95 384 Pfam PF00534 Glycosyl transferases group 1 193 342 1.4E-35 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 RPE_RS04060 16db804e4f577fb470f496475b0c4e95 384 SUPERFAMILY SSF53756 60 371 1.43E-62 T 23-04-2016 RPE_RS04060 16db804e4f577fb470f496475b0c4e95 384 Gene3D G3DSA:3.40.50.2000 188 342 1.6E-30 T 23-04-2016 RPE_RS07155 4e73f3de4d14cf35d3a94276c72c04a5 87 SUPERFAMILY SSF47598 4 49 1.33E-8 T 23-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 RPE_RS07155 4e73f3de4d14cf35d3a94276c72c04a5 87 Pfam PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH 20 86 5.0E-6 T 23-04-2016 IPR022789 Antitoxin ParD RPE_RS09975 6566d838822198409efd37fc8b9fd994 241 PANTHER PTHR11934 1 235 8.6E-93 T 23-04-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RPE_RS09975 6566d838822198409efd37fc8b9fd994 241 SUPERFAMILY SSF100950 3 147 2.81E-43 T 23-04-2016 RPE_RS09975 6566d838822198409efd37fc8b9fd994 241 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 51 225 4.6E-60 T 23-04-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RPE_RS09975 6566d838822198409efd37fc8b9fd994 241 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 3 229 32.994 T 23-04-2016 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RPE_RS09975 6566d838822198409efd37fc8b9fd994 241 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 6 226 5.2E-76 T 23-04-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RPE_RS09975 6566d838822198409efd37fc8b9fd994 241 Gene3D G3DSA:3.30.70.260 140 209 1.1E-21 T 23-04-2016 RPE_RS09975 6566d838822198409efd37fc8b9fd994 241 SUPERFAMILY SSF75445 128 212 1.44E-19 T 23-04-2016 RPE_RS09975 6566d838822198409efd37fc8b9fd994 241 Gene3D G3DSA:3.40.50.1360 4 139 1.4E-57 T 23-04-2016 RPE_RS09100 a82e1ca91fb03e9d0ad36932165964e4 261 PIRSF PIRSF018982 2 255 3.8E-92 T 23-04-2016 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7|UniPathway: UPA00560 RPE_RS09100 a82e1ca91fb03e9d0ad36932165964e4 261 Pfam PF05985 Ethanolamine ammonia-lyase light chain (EutC) 11 243 5.1E-87 T 23-04-2016 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7|UniPathway: UPA00560 RPE_RS09100 a82e1ca91fb03e9d0ad36932165964e4 261 PANTHER PTHR39330 1 260 2.1E-103 T 23-04-2016 RPE_RS09100 a82e1ca91fb03e9d0ad36932165964e4 261 Hamap MF_00601 Ethanolamine ammonia-lyase light chain [eutC]. 1 243 37.203 T 23-04-2016 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7|UniPathway: UPA00560 RPE_RS13815 5aaabe6efd196dd4dfb21fba89d5f397 210 Gene3D G3DSA:3.10.300.10 17 203 1.0E-64 T 23-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 RPE_RS13815 5aaabe6efd196dd4dfb21fba89d5f397 210 TIGRFAM TIGR00567 3mg: DNA-3-methyladenine glycosylase 19 197 7.5E-52 T 23-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 RPE_RS13815 5aaabe6efd196dd4dfb21fba89d5f397 210 PANTHER PTHR10429 18 205 1.3E-69 T 23-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 RPE_RS13815 5aaabe6efd196dd4dfb21fba89d5f397 210 PANTHER PTHR10429:SF0 18 205 1.3E-69 T 23-04-2016 RPE_RS13815 5aaabe6efd196dd4dfb21fba89d5f397 210 SUPERFAMILY SSF50486 17 202 3.45E-62 T 23-04-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 RPE_RS13815 5aaabe6efd196dd4dfb21fba89d5f397 210 Hamap MF_00527 Putative 3-methyladenine DNA glycosylase. 20 197 30.498 T 23-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 RPE_RS13815 5aaabe6efd196dd4dfb21fba89d5f397 210 Pfam PF02245 Methylpurine-DNA glycosylase (MPG) 22 193 2.3E-64 T 23-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 RPE_RS24015 869666e37fc97516e37240f02d9802b5 354 Pfam PF03824 High-affinity nickel-transport protein 69 345 5.5E-64 T 23-04-2016 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 RPE_RS24015 869666e37fc97516e37240f02d9802b5 354 PANTHER PTHR40659 40 197 2.0E-23 T 23-04-2016 RPE_RS24015 869666e37fc97516e37240f02d9802b5 354 PANTHER PTHR40659 225 346 2.0E-23 T 23-04-2016 RPE_RS00430 ac61941d061e0e9dce1c4ef6a3eb892e 812 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 505 802 1.3E-61 T 23-04-2016 IPR007296 Domain of unknown function DUF403 RPE_RS00430 ac61941d061e0e9dce1c4ef6a3eb892e 812 PANTHER PTHR34595:SF1 1 812 1.3E-267 T 23-04-2016 RPE_RS00430 ac61941d061e0e9dce1c4ef6a3eb892e 812 SUPERFAMILY SSF56059 22 216 3.46E-11 T 23-04-2016 RPE_RS00430 ac61941d061e0e9dce1c4ef6a3eb892e 812 PANTHER PTHR34595 1 812 1.3E-267 T 23-04-2016 RPE_RS00430 ac61941d061e0e9dce1c4ef6a3eb892e 812 Pfam PF14403 Circularly permuted ATP-grasp type 2 78 457 7.7E-141 T 23-04-2016 IPR025841 Circularly permuted ATP-grasp type 2 RPE_RS10145 113cb7558d15ef595d8b601632656595 93 Pfam PF00550 Phosphopantetheine attachment site 6 58 4.0E-11 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain RPE_RS10145 113cb7558d15ef595d8b601632656595 93 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 23-04-2016 IPR006162 Phosphopantetheine attachment site RPE_RS10145 113cb7558d15ef595d8b601632656595 93 SUPERFAMILY SSF47336 2 60 1.44E-14 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain RPE_RS10145 113cb7558d15ef595d8b601632656595 93 Gene3D G3DSA:1.10.1200.10 2 91 2.0E-21 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain RPE_RS13875 78bd8d8d0c5f0d0c410962f5fddb0c04 455 PIRSF PIRSF006809 17 450 9.6E-143 T 23-04-2016 IPR016496 GTPase HflX GO:0005525 RPE_RS13875 78bd8d8d0c5f0d0c410962f5fddb0c04 455 PANTHER PTHR10229 22 436 2.7E-175 T 23-04-2016 IPR016496 GTPase HflX GO:0005525 RPE_RS13875 78bd8d8d0c5f0d0c410962f5fddb0c04 455 Hamap MF_00900 GTPase HflX [hflX]. 50 421 46.036 T 23-04-2016 IPR016496 GTPase HflX GO:0005525 RPE_RS13875 78bd8d8d0c5f0d0c410962f5fddb0c04 455 PANTHER PTHR10229:SF0 22 436 2.7E-175 T 23-04-2016 RPE_RS13875 78bd8d8d0c5f0d0c410962f5fddb0c04 455 SUPERFAMILY SSF52540 223 403 1.54E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS13875 78bd8d8d0c5f0d0c410962f5fddb0c04 455 Pfam PF01926 50S ribosome-binding GTPase 224 345 3.1E-19 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RPE_RS13875 78bd8d8d0c5f0d0c410962f5fddb0c04 455 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 44 391 2.5E-133 T 23-04-2016 IPR016496 GTPase HflX GO:0005525 RPE_RS13875 78bd8d8d0c5f0d0c410962f5fddb0c04 455 Pfam PF13167 GTP-binding GTPase N-terminal 48 134 3.4E-25 T 23-04-2016 IPR025121 GTPase HflX, N-terminal RPE_RS13875 78bd8d8d0c5f0d0c410962f5fddb0c04 455 Pfam PF16360 GTP-binding GTPase Middle Region 137 216 1.9E-29 T 23-04-2016 IPR032305 GTP-binding protein, middle domain RPE_RS13875 78bd8d8d0c5f0d0c410962f5fddb0c04 455 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 245 263 1.8E-10 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RPE_RS13875 78bd8d8d0c5f0d0c410962f5fddb0c04 455 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 224 244 1.8E-10 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RPE_RS13875 78bd8d8d0c5f0d0c410962f5fddb0c04 455 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 291 309 1.8E-10 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RPE_RS13875 78bd8d8d0c5f0d0c410962f5fddb0c04 455 Gene3D G3DSA:3.40.50.300 222 393 5.8E-34 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02305 f8790eb5949477e9fb6bddd529b8ec00 106 PANTHER PTHR10438 6 98 7.7E-40 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RPE_RS02305 f8790eb5949477e9fb6bddd529b8ec00 106 Pfam PF00085 Thioredoxin 4 104 5.6E-34 T 23-04-2016 IPR013766 Thioredoxin domain GO:0045454 RPE_RS02305 f8790eb5949477e9fb6bddd529b8ec00 106 SUPERFAMILY SSF52833 5 105 9.86E-40 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS02305 f8790eb5949477e9fb6bddd529b8ec00 106 TIGRFAM TIGR01068 thioredoxin: thioredoxin 7 104 9.3E-40 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RPE_RS02305 f8790eb5949477e9fb6bddd529b8ec00 106 PIRSF PIRSF000077 1 106 4.7E-44 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RPE_RS02305 f8790eb5949477e9fb6bddd529b8ec00 106 ProSitePatterns PS00194 Thioredoxin family active site. 23 41 - T 23-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 RPE_RS02305 f8790eb5949477e9fb6bddd529b8ec00 106 PRINTS PR00421 Thioredoxin family signature 70 81 1.6E-9 T 23-04-2016 RPE_RS02305 f8790eb5949477e9fb6bddd529b8ec00 106 PRINTS PR00421 Thioredoxin family signature 30 39 1.6E-9 T 23-04-2016 RPE_RS02305 f8790eb5949477e9fb6bddd529b8ec00 106 PRINTS PR00421 Thioredoxin family signature 22 30 1.6E-9 T 23-04-2016 RPE_RS02305 f8790eb5949477e9fb6bddd529b8ec00 106 Gene3D G3DSA:3.40.30.10 3 104 4.3E-38 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS02305 f8790eb5949477e9fb6bddd529b8ec00 106 PANTHER PTHR10438:SF256 6 98 7.7E-40 T 23-04-2016 RPE_RS24480 38ccd4b7b82bf2fbbf8c1d22bd248d55 450 Gene3D G3DSA:3.30.565.10 312 445 1.4E-23 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS24480 38ccd4b7b82bf2fbbf8c1d22bd248d55 450 PANTHER PTHR24423 183 444 3.5E-35 T 23-04-2016 RPE_RS24480 38ccd4b7b82bf2fbbf8c1d22bd248d55 450 PANTHER PTHR24423 128 140 3.5E-35 T 23-04-2016 RPE_RS24480 38ccd4b7b82bf2fbbf8c1d22bd248d55 450 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 348 429 7.0E-9 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS24480 38ccd4b7b82bf2fbbf8c1d22bd248d55 450 SUPERFAMILY SSF55874 312 443 5.77E-23 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS24480 38ccd4b7b82bf2fbbf8c1d22bd248d55 450 PANTHER PTHR24423:SF543 183 444 3.5E-35 T 23-04-2016 RPE_RS24480 38ccd4b7b82bf2fbbf8c1d22bd248d55 450 PANTHER PTHR24423:SF543 128 140 3.5E-35 T 23-04-2016 RPE_RS24480 38ccd4b7b82bf2fbbf8c1d22bd248d55 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 381 395 3.7E-5 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS24480 38ccd4b7b82bf2fbbf8c1d22bd248d55 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 412 430 3.7E-5 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS24480 38ccd4b7b82bf2fbbf8c1d22bd248d55 450 SMART SM00387 347 450 7.4E-13 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS21625 a56be6cb0a4507ee1e36d4512e3f0117 180 PANTHER PTHR10815 6 174 7.0E-76 T 23-04-2016 RPE_RS21625 a56be6cb0a4507ee1e36d4512e3f0117 180 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 88 168 2.4E-21 T 23-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 RPE_RS21625 a56be6cb0a4507ee1e36d4512e3f0117 180 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 137 143 - T 23-04-2016 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 RPE_RS21625 a56be6cb0a4507ee1e36d4512e3f0117 180 Gene3D G3DSA:3.30.160.70 5 83 1.8E-11 T 23-04-2016 RPE_RS21625 a56be6cb0a4507ee1e36d4512e3f0117 180 SUPERFAMILY SSF53155 4 83 1.77E-15 T 23-04-2016 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 RPE_RS21625 a56be6cb0a4507ee1e36d4512e3f0117 180 Gene3D G3DSA:1.10.10.10 86 172 9.4E-27 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS21625 a56be6cb0a4507ee1e36d4512e3f0117 180 PANTHER PTHR10815:SF7 6 174 7.0E-76 T 23-04-2016 RPE_RS21625 a56be6cb0a4507ee1e36d4512e3f0117 180 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 88 169 2.5E-26 T 23-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 RPE_RS21625 a56be6cb0a4507ee1e36d4512e3f0117 180 SUPERFAMILY SSF46767 87 171 3.92E-24 T 23-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 RPE_RS20285 162c57737e7f076fa228f93f15666dcb 67 TIGRFAM TIGR04498 AbiV_defense: abortive infection protein, AbiV family 21 64 3.1E-12 T 23-04-2016 IPR030987 Abortive infection protein, AbiV family RPE_RS11495 a03b4c97a3441759339da8d0ebd0afe8 405 PANTHER PTHR36927 1 396 2.4E-48 T 23-04-2016 RPE_RS11495 a03b4c97a3441759339da8d0ebd0afe8 405 Pfam PF01757 Acyltransferase family 14 372 5.0E-40 T 23-04-2016 IPR002656 Acyltransferase 3 GO:0016747 RPE_RS11700 533f512354c8be7624cd69b191de8910 142 SMART SM00116 78 125 1.8E-9 T 23-04-2016 IPR000644 CBS domain RPE_RS11700 533f512354c8be7624cd69b191de8910 142 SMART SM00116 13 60 2.0E-5 T 23-04-2016 IPR000644 CBS domain RPE_RS11700 533f512354c8be7624cd69b191de8910 142 SUPERFAMILY SSF54631 1 139 1.64E-32 T 23-04-2016 RPE_RS11700 533f512354c8be7624cd69b191de8910 142 Pfam PF00571 CBS domain 71 123 1.1E-14 T 23-04-2016 IPR000644 CBS domain RPE_RS11700 533f512354c8be7624cd69b191de8910 142 Pfam PF00571 CBS domain 13 59 2.9E-6 T 23-04-2016 IPR000644 CBS domain RPE_RS11700 533f512354c8be7624cd69b191de8910 142 PANTHER PTHR11911 1 139 1.4E-30 T 23-04-2016 RPE_RS11700 533f512354c8be7624cd69b191de8910 142 Gene3D G3DSA:3.10.580.10 1 123 1.3E-30 T 23-04-2016 RPE_RS19310 2a7bc6d23c23a76d1109335f235eb210 414 SUPERFAMILY SSF53067 157 395 3.29E-77 T 23-04-2016 RPE_RS19310 2a7bc6d23c23a76d1109335f235eb210 414 Pfam PF00871 Acetokinase family 8 389 2.4E-136 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RPE_RS19310 2a7bc6d23c23a76d1109335f235eb210 414 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 203 220 - T 23-04-2016 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RPE_RS19310 2a7bc6d23c23a76d1109335f235eb210 414 Hamap MF_00020 Acetate kinase [ackA]. 1 399 165.335 T 23-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RPE_RS19310 2a7bc6d23c23a76d1109335f235eb210 414 PANTHER PTHR21060:SF15 6 405 2.0E-184 T 23-04-2016 RPE_RS19310 2a7bc6d23c23a76d1109335f235eb210 414 TIGRFAM TIGR00016 ackA: acetate kinase 6 395 5.6E-141 T 23-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RPE_RS19310 2a7bc6d23c23a76d1109335f235eb210 414 PANTHER PTHR21060 6 405 2.0E-184 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RPE_RS19310 2a7bc6d23c23a76d1109335f235eb210 414 PRINTS PR00471 Acetate kinase family signature 300 313 8.5E-44 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RPE_RS19310 2a7bc6d23c23a76d1109335f235eb210 414 PRINTS PR00471 Acetate kinase family signature 377 389 8.5E-44 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RPE_RS19310 2a7bc6d23c23a76d1109335f235eb210 414 PRINTS PR00471 Acetate kinase family signature 173 186 8.5E-44 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RPE_RS19310 2a7bc6d23c23a76d1109335f235eb210 414 PRINTS PR00471 Acetate kinase family signature 8 19 8.5E-44 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RPE_RS19310 2a7bc6d23c23a76d1109335f235eb210 414 PRINTS PR00471 Acetate kinase family signature 322 338 8.5E-44 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RPE_RS19310 2a7bc6d23c23a76d1109335f235eb210 414 PRINTS PR00471 Acetate kinase family signature 203 224 8.5E-44 T 23-04-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RPE_RS19310 2a7bc6d23c23a76d1109335f235eb210 414 Gene3D G3DSA:3.30.420.40 205 395 3.0E-67 T 23-04-2016 RPE_RS19310 2a7bc6d23c23a76d1109335f235eb210 414 Gene3D G3DSA:3.30.420.40 8 204 1.8E-10 T 23-04-2016 RPE_RS19310 2a7bc6d23c23a76d1109335f235eb210 414 PIRSF PIRSF000722 5 398 7.8E-135 T 23-04-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RPE_RS19310 2a7bc6d23c23a76d1109335f235eb210 414 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 8 19 - T 23-04-2016 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 RPE_RS19310 2a7bc6d23c23a76d1109335f235eb210 414 SUPERFAMILY SSF53067 6 192 2.01E-64 T 23-04-2016 RPE_RS10965 00fbee833e9b1aacfe06cdb8d0024907 321 PANTHER PTHR11088 10 287 2.1E-76 T 23-04-2016 RPE_RS10965 00fbee833e9b1aacfe06cdb8d0024907 321 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 12 298 7.6E-68 T 23-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 RPE_RS10965 00fbee833e9b1aacfe06cdb8d0024907 321 Pfam PF01715 IPP transferase 44 289 1.5E-63 T 23-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 RPE_RS10965 00fbee833e9b1aacfe06cdb8d0024907 321 Gene3D G3DSA:3.40.50.300 9 177 4.5E-42 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10965 00fbee833e9b1aacfe06cdb8d0024907 321 SUPERFAMILY SSF52540 167 245 1.9E-10 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10965 00fbee833e9b1aacfe06cdb8d0024907 321 SUPERFAMILY SSF52540 7 74 1.9E-10 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10965 00fbee833e9b1aacfe06cdb8d0024907 321 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 11 310 25.62 T 23-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 RPE_RS10965 00fbee833e9b1aacfe06cdb8d0024907 321 Gene3D G3DSA:1.10.287.890 208 289 3.1E-29 T 23-04-2016 RPE_RS10965 00fbee833e9b1aacfe06cdb8d0024907 321 SUPERFAMILY SSF52540 12 160 6.91E-19 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS08595 b0a08c132fae0939351eeb4ea682b49f 484 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 28 253 6.2E-60 T 23-04-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 RPE_RS08595 b0a08c132fae0939351eeb4ea682b49f 484 SUPERFAMILY SSF56601 13 270 1.48E-74 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS08595 b0a08c132fae0939351eeb4ea682b49f 484 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 140 153 2.4E-12 T 23-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RPE_RS08595 b0a08c132fae0939351eeb4ea682b49f 484 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 60 71 2.4E-12 T 23-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RPE_RS08595 b0a08c132fae0939351eeb4ea682b49f 484 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 113 130 2.4E-12 T 23-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RPE_RS08595 b0a08c132fae0939351eeb4ea682b49f 484 PANTHER PTHR21581 29 270 7.2E-74 T 23-04-2016 RPE_RS08595 b0a08c132fae0939351eeb4ea682b49f 484 Gene3D G3DSA:3.40.710.10 14 270 1.1E-87 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS15485 93728c154177dfd51332e278b7bbac32 482 Gene3D G3DSA:1.10.1060.10 213 271 2.4E-6 T 23-04-2016 RPE_RS15485 93728c154177dfd51332e278b7bbac32 482 Gene3D G3DSA:3.30.70.20 272 304 1.3E-4 T 23-04-2016 RPE_RS15485 93728c154177dfd51332e278b7bbac32 482 Gene3D G3DSA:2.60.40.10 352 475 1.3E-29 T 23-04-2016 IPR013783 Immunoglobulin-like fold RPE_RS15485 93728c154177dfd51332e278b7bbac32 482 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 352 475 1.5E-27 T 23-04-2016 IPR032879 FixG, C-terminal immunoglobulin-like domain RPE_RS15485 93728c154177dfd51332e278b7bbac32 482 PANTHER PTHR24960:SF45 1 391 1.0E-121 T 23-04-2016 RPE_RS15485 93728c154177dfd51332e278b7bbac32 482 PANTHER PTHR24960 1 391 1.0E-121 T 23-04-2016 RPE_RS15485 93728c154177dfd51332e278b7bbac32 482 SUPERFAMILY SSF54862 95 118 1.78E-26 T 23-04-2016 RPE_RS15485 93728c154177dfd51332e278b7bbac32 482 SUPERFAMILY SSF54862 164 356 1.78E-26 T 23-04-2016 RPE_RS15485 93728c154177dfd51332e278b7bbac32 482 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 26 469 8.0E-160 T 23-04-2016 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021 RPE_RS15485 93728c154177dfd51332e278b7bbac32 482 Pfam PF12801 4Fe-4S binding domain 87 125 7.4E-8 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RPE_RS15485 93728c154177dfd51332e278b7bbac32 482 Pfam PF13746 4Fe-4S dicluster domain 209 316 2.1E-38 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RPE_RS15485 93728c154177dfd51332e278b7bbac32 482 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 264 275 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RPE_RS04860 4babf6ddee89dc335a6f65c194400760 362 PIRSF PIRSF003161 28 361 5.4E-113 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RPE_RS04860 4babf6ddee89dc335a6f65c194400760 362 SUPERFAMILY SSF48029 144 352 1.07E-60 T 23-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical RPE_RS04860 4babf6ddee89dc335a6f65c194400760 362 PRINTS PR00954 Flagellar motor switch protein FliG signature 299 325 3.1E-56 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RPE_RS04860 4babf6ddee89dc335a6f65c194400760 362 PRINTS PR00954 Flagellar motor switch protein FliG signature 34 50 3.1E-56 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RPE_RS04860 4babf6ddee89dc335a6f65c194400760 362 PRINTS PR00954 Flagellar motor switch protein FliG signature 142 165 3.1E-56 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RPE_RS04860 4babf6ddee89dc335a6f65c194400760 362 PRINTS PR00954 Flagellar motor switch protein FliG signature 63 89 3.1E-56 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RPE_RS04860 4babf6ddee89dc335a6f65c194400760 362 PRINTS PR00954 Flagellar motor switch protein FliG signature 275 295 3.1E-56 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RPE_RS04860 4babf6ddee89dc335a6f65c194400760 362 PRINTS PR00954 Flagellar motor switch protein FliG signature 253 273 3.1E-56 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RPE_RS04860 4babf6ddee89dc335a6f65c194400760 362 PRINTS PR00954 Flagellar motor switch protein FliG signature 222 247 3.1E-56 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RPE_RS04860 4babf6ddee89dc335a6f65c194400760 362 Pfam PF01706 FliG C-terminal domain 245 351 1.3E-37 T 23-04-2016 IPR023087 Flagellar motor switch protein FliG, C-terminal RPE_RS04860 4babf6ddee89dc335a6f65c194400760 362 Pfam PF14842 FliG N-terminal domain 34 135 7.8E-23 T 23-04-2016 IPR028263 Flagellar motor switch protein FliG, N-terminal domain RPE_RS04860 4babf6ddee89dc335a6f65c194400760 362 Gene3D G3DSA:1.10.220.30 224 358 7.5E-40 T 23-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical RPE_RS04860 4babf6ddee89dc335a6f65c194400760 362 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 33 360 2.3E-74 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RPE_RS04860 4babf6ddee89dc335a6f65c194400760 362 PANTHER PTHR30534 21 360 2.7E-91 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RPE_RS04860 4babf6ddee89dc335a6f65c194400760 362 Pfam PF14841 FliG middle domain 144 217 6.8E-25 T 23-04-2016 IPR032779 Flagellar motor switch protein FliG, middle domain RPE_RS04860 4babf6ddee89dc335a6f65c194400760 362 PANTHER PTHR30534:SF0 21 360 2.7E-91 T 23-04-2016 RPE_RS04860 4babf6ddee89dc335a6f65c194400760 362 Gene3D G3DSA:1.10.220.30 132 217 8.8E-26 T 23-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical RPE_RS04860 4babf6ddee89dc335a6f65c194400760 362 Gene3D G3DSA:1.10.220.30 36 98 1.8E-11 T 23-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical RPE_RS04860 4babf6ddee89dc335a6f65c194400760 362 SUPERFAMILY SSF48029 35 143 5.1E-18 T 23-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical RPE_RS06035 18b69c55c0f45e1b5549d76417fcf5c8 99 Gene3D G3DSA:3.30.750.24 15 94 3.4E-6 T 23-04-2016 IPR002645 STAS domain RPE_RS06035 18b69c55c0f45e1b5549d76417fcf5c8 99 Pfam PF13466 STAS domain 15 90 3.7E-10 T 23-04-2016 IPR002645 STAS domain RPE_RS06035 18b69c55c0f45e1b5549d76417fcf5c8 99 SUPERFAMILY SSF52091 15 94 1.14E-7 T 23-04-2016 IPR002645 STAS domain RPE_RS05870 244dbbdf0ce2bbb30f4ec6d6c70660a0 262 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 3 136 3.0E-45 T 23-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G RPE_RS05870 244dbbdf0ce2bbb30f4ec6d6c70660a0 262 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 144 243 1.0E-31 T 23-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G RPE_RS05870 244dbbdf0ce2bbb30f4ec6d6c70660a0 262 Pfam PF00460 Flagella basal body rod protein 5 34 4.7E-10 T 23-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RPE_RS05870 244dbbdf0ce2bbb30f4ec6d6c70660a0 262 PANTHER PTHR30435:SF19 1 262 1.7E-114 T 23-04-2016 RPE_RS05870 244dbbdf0ce2bbb30f4ec6d6c70660a0 262 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 182 258 2.4E-23 T 23-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RPE_RS05870 244dbbdf0ce2bbb30f4ec6d6c70660a0 262 PANTHER PTHR30435 1 262 1.7E-114 T 23-04-2016 RPE_RS05870 244dbbdf0ce2bbb30f4ec6d6c70660a0 262 SUPERFAMILY SSF117143 93 222 1.1E-35 T 23-04-2016 RPE_RS05870 244dbbdf0ce2bbb30f4ec6d6c70660a0 262 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 10 30 - T 23-04-2016 IPR019776 Flagellar basal body rod protein, conserved site RPE_RS05870 244dbbdf0ce2bbb30f4ec6d6c70660a0 262 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 3 259 2.6E-105 T 23-04-2016 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 RPE_RS13150 00f875840356b584f7f8f33f1672c22d 263 PANTHER PTHR22748 1 261 5.4E-140 T 23-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 RPE_RS13150 00f875840356b584f7f8f33f1672c22d 263 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 259 7.5E-70 T 23-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 RPE_RS13150 00f875840356b584f7f8f33f1672c22d 263 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 258 1.1E-72 T 23-04-2016 RPE_RS13150 00f875840356b584f7f8f33f1672c22d 263 ProSitePatterns PS00728 AP endonucleases family 1 signature 3. 215 226 - T 23-04-2016 IPR020848 AP endonuclease 1, conserved site GO:0003677|GO:0004519|GO:0005622|GO:0006281 RPE_RS13150 00f875840356b584f7f8f33f1672c22d 263 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 251 1.2E-27 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RPE_RS13150 00f875840356b584f7f8f33f1672c22d 263 PANTHER PTHR22748:SF9 1 261 5.4E-140 T 23-04-2016 RPE_RS13150 00f875840356b584f7f8f33f1672c22d 263 SUPERFAMILY SSF56219 1 260 4.71E-85 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RPE_RS13150 00f875840356b584f7f8f33f1672c22d 263 Gene3D G3DSA:3.60.10.10 1 259 5.4E-80 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RPE_RS13150 00f875840356b584f7f8f33f1672c22d 263 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 27 36 - T 23-04-2016 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 RPE_RS17945 5cd26da1da606090f33dc2049ed77528 92 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 8.4E-21 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RPE_RS17945 5cd26da1da606090f33dc2049ed77528 92 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 8.4E-21 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RPE_RS17945 5cd26da1da606090f33dc2049ed77528 92 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 8.4E-21 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RPE_RS17945 5cd26da1da606090f33dc2049ed77528 92 SUPERFAMILY SSF54570 3 84 1.96E-33 T 23-04-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 RPE_RS17945 5cd26da1da606090f33dc2049ed77528 92 PIRSF PIRSF002144 1 92 1.1E-32 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RPE_RS17945 5cd26da1da606090f33dc2049ed77528 92 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 91 5.3E-40 T 23-04-2016 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 RPE_RS17945 5cd26da1da606090f33dc2049ed77528 92 Gene3D G3DSA:3.30.860.10 1 90 2.4E-40 T 23-04-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 RPE_RS17945 5cd26da1da606090f33dc2049ed77528 92 PANTHER PTHR11880 1 91 2.2E-47 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RPE_RS17945 5cd26da1da606090f33dc2049ed77528 92 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 24.236 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RPE_RS17945 5cd26da1da606090f33dc2049ed77528 92 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 23-04-2016 IPR020934 Ribosomal protein S19 conserved site GO:0003723 RPE_RS17945 5cd26da1da606090f33dc2049ed77528 92 Pfam PF00203 Ribosomal protein S19 3 83 7.4E-36 T 23-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RPE_RS16435 e15c4391da7c6c81c71dacdb77caf3e1 490 PANTHER PTHR32057 5 490 3.1E-183 T 23-04-2016 RPE_RS16435 e15c4391da7c6c81c71dacdb77caf3e1 490 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 3 476 46.454 T 23-04-2016 IPR003846 Uncharacterised protein family UPF0061 RPE_RS16435 e15c4391da7c6c81c71dacdb77caf3e1 490 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 7 459 8.5E-127 T 23-04-2016 IPR003846 Uncharacterised protein family UPF0061 RPE_RS01570 5c0c11dca74b2e827dead84a4fe84b60 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 118 138 3.1E-55 T 23-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS01570 5c0c11dca74b2e827dead84a4fe84b60 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 201 225 3.1E-55 T 23-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS01570 5c0c11dca74b2e827dead84a4fe84b60 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 97 117 3.1E-55 T 23-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS01570 5c0c11dca74b2e827dead84a4fe84b60 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 153 179 3.1E-55 T 23-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS01570 5c0c11dca74b2e827dead84a4fe84b60 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 42 59 3.1E-55 T 23-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS01570 5c0c11dca74b2e827dead84a4fe84b60 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 59 79 3.1E-55 T 23-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS01570 5c0c11dca74b2e827dead84a4fe84b60 245 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 42 225 1.8E-83 T 23-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS01570 5c0c11dca74b2e827dead84a4fe84b60 245 PANTHER PTHR30071 3 221 3.3E-71 T 23-04-2016 RPE_RS01570 5c0c11dca74b2e827dead84a4fe84b60 245 Pfam PF01578 Cytochrome C assembly protein 25 181 5.0E-32 T 23-04-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 RPE_RS23150 4d6a7a2d66017643856393f6f8219f94 486 PANTHER PTHR30521:SF2 66 235 2.0E-76 T 23-04-2016 RPE_RS23150 4d6a7a2d66017643856393f6f8219f94 486 PANTHER PTHR30521:SF2 254 479 2.0E-76 T 23-04-2016 RPE_RS23150 4d6a7a2d66017643856393f6f8219f94 486 Pfam PF04261 Dyp-type peroxidase family 255 464 2.4E-9 T 23-04-2016 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 KEGG: 00480+1.11.1.- RPE_RS23150 4d6a7a2d66017643856393f6f8219f94 486 SUPERFAMILY SSF54909 12 472 4.18E-92 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RPE_RS23150 4d6a7a2d66017643856393f6f8219f94 486 PANTHER PTHR30521 66 235 2.0E-76 T 23-04-2016 RPE_RS23150 4d6a7a2d66017643856393f6f8219f94 486 PANTHER PTHR30521 254 479 2.0E-76 T 23-04-2016 RPE_RS15665 21210bd2f5d8c3732ef1d9ffdd85c99f 230 PANTHER PTHR34108:SF1 1 230 1.2E-52 T 23-04-2016 RPE_RS15665 21210bd2f5d8c3732ef1d9ffdd85c99f 230 PANTHER PTHR34108 1 230 1.2E-52 T 23-04-2016 RPE_RS15665 21210bd2f5d8c3732ef1d9ffdd85c99f 230 SUPERFAMILY SSF63848 125 229 9.02E-31 T 23-04-2016 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 RPE_RS15665 21210bd2f5d8c3732ef1d9ffdd85c99f 230 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 127 226 3.4E-29 T 23-04-2016 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 RPE_RS15665 21210bd2f5d8c3732ef1d9ffdd85c99f 230 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 30 229 3.0E-45 T 23-04-2016 IPR013033 Septum formation inhibitor MinC GO:0000917|GO:0051726 RPE_RS15665 21210bd2f5d8c3732ef1d9ffdd85c99f 230 Gene3D G3DSA:2.160.20.70 114 229 7.2E-35 T 23-04-2016 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 RPE_RS15665 21210bd2f5d8c3732ef1d9ffdd85c99f 230 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 11 230 23.528 T 23-04-2016 IPR013033 Septum formation inhibitor MinC GO:0000917|GO:0051726 RPE_RS11035 8de95f1e1de25980570b1d407d94e639 516 SUPERFAMILY SSF53850 257 507 9.59E-53 T 23-04-2016 RPE_RS11035 8de95f1e1de25980570b1d407d94e639 516 PANTHER PTHR30177 5 219 1.1E-170 T 23-04-2016 RPE_RS11035 8de95f1e1de25980570b1d407d94e639 516 PANTHER PTHR30177 285 516 1.1E-170 T 23-04-2016 RPE_RS11035 8de95f1e1de25980570b1d407d94e639 516 PANTHER PTHR30177:SF4 5 219 1.1E-170 T 23-04-2016 RPE_RS11035 8de95f1e1de25980570b1d407d94e639 516 PANTHER PTHR30177:SF4 285 516 1.1E-170 T 23-04-2016 RPE_RS11035 8de95f1e1de25980570b1d407d94e639 516 Gene3D G3DSA:1.10.3720.10 16 226 5.4E-27 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS11035 8de95f1e1de25980570b1d407d94e639 516 Gene3D G3DSA:3.40.190.120 360 456 9.7E-29 T 23-04-2016 RPE_RS11035 8de95f1e1de25980570b1d407d94e639 516 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 257 506 2.8E-47 T 23-04-2016 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 RPE_RS11035 8de95f1e1de25980570b1d407d94e639 516 Gene3D G3DSA:3.40.190.10 253 359 2.4E-34 T 23-04-2016 RPE_RS11035 8de95f1e1de25980570b1d407d94e639 516 Gene3D G3DSA:3.40.190.10 467 508 2.4E-34 T 23-04-2016 RPE_RS11035 8de95f1e1de25980570b1d407d94e639 516 SUPERFAMILY SSF161098 18 213 1.57E-29 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS11035 8de95f1e1de25980570b1d407d94e639 516 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 40 218 2.0E-13 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS05565 58b9320b11a46144c98253651b62f590 400 Gene3D G3DSA:3.40.50.2000 218 362 2.3E-25 T 23-04-2016 RPE_RS05565 58b9320b11a46144c98253651b62f590 400 SUPERFAMILY SSF53756 16 391 1.22E-65 T 23-04-2016 RPE_RS05565 58b9320b11a46144c98253651b62f590 400 Pfam PF00534 Glycosyl transferases group 1 215 376 3.1E-31 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 RPE_RS05565 58b9320b11a46144c98253651b62f590 400 PANTHER PTHR12526:SF375 88 391 8.8E-86 T 23-04-2016 RPE_RS05565 58b9320b11a46144c98253651b62f590 400 PANTHER PTHR12526:SF375 1 59 8.8E-86 T 23-04-2016 RPE_RS05565 58b9320b11a46144c98253651b62f590 400 PANTHER PTHR12526 88 391 8.8E-86 T 23-04-2016 RPE_RS05565 58b9320b11a46144c98253651b62f590 400 PANTHER PTHR12526 1 59 8.8E-86 T 23-04-2016 RPE_RS20300 61db0994f6433bf993a9ad149edda034 127 TIGRFAM TIGR01985 phasin_2: phasin 10 126 1.3E-30 T 23-04-2016 IPR010234 Phasin, subfamily 2 RPE_RS20300 61db0994f6433bf993a9ad149edda034 127 Pfam PF09361 Phasin protein 31 125 6.2E-18 T 23-04-2016 IPR018968 Phasin RPE_RS10685 e010ff867adf418ad7ffdad1183afcdf 258 SUPERFAMILY SSF141523 24 128 4.58E-26 T 23-04-2016 RPE_RS10685 e010ff867adf418ad7ffdad1183afcdf 258 Pfam PF03734 L,D-transpeptidase catalytic domain 25 129 5.4E-19 T 23-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 RPE_RS10685 e010ff867adf418ad7ffdad1183afcdf 258 PANTHER PTHR30582:SF12 20 217 4.9E-92 T 23-04-2016 RPE_RS10685 e010ff867adf418ad7ffdad1183afcdf 258 PANTHER PTHR30582 20 217 4.9E-92 T 23-04-2016 RPE_RS10685 e010ff867adf418ad7ffdad1183afcdf 258 Gene3D G3DSA:2.40.440.10 23 129 3.3E-22 T 23-04-2016 RPE_RS09840 064afc26e1c0166fa8c5396b4dda9420 242 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 67 83 1.0E-7 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RPE_RS09840 064afc26e1c0166fa8c5396b4dda9420 242 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 53 67 1.0E-7 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RPE_RS09840 064afc26e1c0166fa8c5396b4dda9420 242 SMART SM00895 103 228 4.7E-14 T 23-04-2016 IPR011711 GntR, C-terminal RPE_RS09840 064afc26e1c0166fa8c5396b4dda9420 242 Pfam PF00392 Bacterial regulatory proteins, gntR family 31 93 1.3E-12 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RPE_RS09840 064afc26e1c0166fa8c5396b4dda9420 242 Pfam PF07729 FCD domain 103 226 1.1E-20 T 23-04-2016 IPR011711 GntR, C-terminal RPE_RS09840 064afc26e1c0166fa8c5396b4dda9420 242 PANTHER PTHR11751:SF384 53 119 1.0E-27 T 23-04-2016 RPE_RS09840 064afc26e1c0166fa8c5396b4dda9420 242 Gene3D G3DSA:1.20.120.530 98 233 1.2E-23 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RPE_RS09840 064afc26e1c0166fa8c5396b4dda9420 242 SMART SM00345 32 93 6.7E-10 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RPE_RS09840 064afc26e1c0166fa8c5396b4dda9420 242 SUPERFAMILY SSF46785 25 117 6.72E-15 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS09840 064afc26e1c0166fa8c5396b4dda9420 242 Gene3D G3DSA:1.10.10.10 21 93 4.1E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS09840 064afc26e1c0166fa8c5396b4dda9420 242 PANTHER PTHR11751 53 119 1.0E-27 T 23-04-2016 RPE_RS09840 064afc26e1c0166fa8c5396b4dda9420 242 SUPERFAMILY SSF48008 100 232 6.02E-22 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RPE_RS21185 44051a726372569e460ecc128a7fb913 174 Pfam PF08282 haloacid dehalogenase-like hydrolase 89 151 1.1E-5 T 23-04-2016 IPR023214 HAD-like domain RPE_RS21185 44051a726372569e460ecc128a7fb913 174 Gene3D G3DSA:3.40.50.1000 4 161 7.8E-30 T 23-04-2016 IPR023214 HAD-like domain RPE_RS21185 44051a726372569e460ecc128a7fb913 174 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 15 163 2.9E-33 T 23-04-2016 IPR010023 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase GO:0019143 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 RPE_RS21185 44051a726372569e460ecc128a7fb913 174 PIRSF PIRSF006118 3 174 5.5E-45 T 23-04-2016 IPR010023 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase GO:0019143 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 RPE_RS21185 44051a726372569e460ecc128a7fb913 174 PANTHER PTHR21485:SF3 7 161 2.2E-37 T 23-04-2016 RPE_RS21185 44051a726372569e460ecc128a7fb913 174 PANTHER PTHR21485 7 161 2.2E-37 T 23-04-2016 RPE_RS21185 44051a726372569e460ecc128a7fb913 174 SUPERFAMILY SSF56784 13 167 5.91E-30 T 23-04-2016 IPR023214 HAD-like domain RPE_RS04330 79a6d1ab9f2a3cb966f04b4e8785259e 547 SUPERFAMILY SSF54849 137 205 7.1E-23 T 23-04-2016 RPE_RS04330 79a6d1ab9f2a3cb966f04b4e8785259e 547 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 523 2.0E-97 T 23-04-2016 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 RPE_RS04330 79a6d1ab9f2a3cb966f04b4e8785259e 547 SUPERFAMILY SSF52029 185 376 1.01E-84 T 23-04-2016 IPR027409 GroEL-like apical domain RPE_RS04330 79a6d1ab9f2a3cb966f04b4e8785259e 547 PANTHER PTHR11353 2 547 1.5E-259 T 23-04-2016 RPE_RS04330 79a6d1ab9f2a3cb966f04b4e8785259e 547 Gene3D G3DSA:1.10.560.10 3 188 8.2E-47 T 23-04-2016 IPR027413 GroEL-like equatorial domain RPE_RS04330 79a6d1ab9f2a3cb966f04b4e8785259e 547 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 527 1.1E-255 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RPE_RS04330 79a6d1ab9f2a3cb966f04b4e8785259e 547 Gene3D G3DSA:3.50.7.10 189 367 6.2E-101 T 23-04-2016 IPR027409 GroEL-like apical domain RPE_RS04330 79a6d1ab9f2a3cb966f04b4e8785259e 547 Hamap MF_00600 60 kDa chaperonin [groL]. 2 545 42.128 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RPE_RS04330 79a6d1ab9f2a3cb966f04b4e8785259e 547 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 23-04-2016 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 RPE_RS04330 79a6d1ab9f2a3cb966f04b4e8785259e 547 SUPERFAMILY SSF48592 406 522 2.44E-77 T 23-04-2016 RPE_RS04330 79a6d1ab9f2a3cb966f04b4e8785259e 547 SUPERFAMILY SSF48592 7 134 2.44E-77 T 23-04-2016 RPE_RS04330 79a6d1ab9f2a3cb966f04b4e8785259e 547 PRINTS PR00298 60kDa chaperonin signature 27 53 1.5E-74 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RPE_RS04330 79a6d1ab9f2a3cb966f04b4e8785259e 547 PRINTS PR00298 60kDa chaperonin signature 350 375 1.5E-74 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RPE_RS04330 79a6d1ab9f2a3cb966f04b4e8785259e 547 PRINTS PR00298 60kDa chaperonin signature 83 110 1.5E-74 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RPE_RS04330 79a6d1ab9f2a3cb966f04b4e8785259e 547 PRINTS PR00298 60kDa chaperonin signature 398 419 1.5E-74 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RPE_RS04330 79a6d1ab9f2a3cb966f04b4e8785259e 547 PRINTS PR00298 60kDa chaperonin signature 268 291 1.5E-74 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RPE_RS04330 79a6d1ab9f2a3cb966f04b4e8785259e 547 Gene3D G3DSA:1.10.560.10 368 519 6.9E-43 T 23-04-2016 IPR027413 GroEL-like equatorial domain RPE_RS14725 fa5154a88a5751b39cab8ded3172c76d 188 Pfam PF01132 Elongation factor P (EF-P) OB domain 70 122 1.6E-19 T 23-04-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 RPE_RS14725 fa5154a88a5751b39cab8ded3172c76d 188 Gene3D G3DSA:2.40.50.140 131 186 8.2E-21 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS14725 fa5154a88a5751b39cab8ded3172c76d 188 SMART SM00841 130 185 1.2E-23 T 23-04-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 RPE_RS14725 fa5154a88a5751b39cab8ded3172c76d 188 PIRSF PIRSF005901 2 187 3.6E-59 T 23-04-2016 IPR020599 Translation elongation factor P/YeiP UniPathway: UPA00345 RPE_RS14725 fa5154a88a5751b39cab8ded3172c76d 188 Gene3D G3DSA:2.40.50.140 66 128 3.4E-22 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS14725 fa5154a88a5751b39cab8ded3172c76d 188 PANTHER PTHR30053 2 187 2.5E-77 T 23-04-2016 RPE_RS14725 fa5154a88a5751b39cab8ded3172c76d 188 SUPERFAMILY SSF50249 66 127 2.57E-15 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS14725 fa5154a88a5751b39cab8ded3172c76d 188 SUPERFAMILY SSF50249 131 186 9.77E-15 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS14725 fa5154a88a5751b39cab8ded3172c76d 188 SUPERFAMILY SSF50104 5 64 1.99E-13 T 23-04-2016 IPR008991 Translation protein SH3-like domain RPE_RS14725 fa5154a88a5751b39cab8ded3172c76d 188 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 5 61 3.9E-18 T 23-04-2016 IPR013185 Translation elongation factor, KOW-like UniPathway: UPA00345 RPE_RS14725 fa5154a88a5751b39cab8ded3172c76d 188 TIGRFAM TIGR00038 efp: translation elongation factor P 5 186 8.4E-63 T 23-04-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 UniPathway: UPA00345 RPE_RS14725 fa5154a88a5751b39cab8ded3172c76d 188 Hamap MF_00141 Elongation factor P [efp]. 2 186 42.73 T 23-04-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 UniPathway: UPA00345 RPE_RS14725 fa5154a88a5751b39cab8ded3172c76d 188 Pfam PF09285 Elongation factor P, C-terminal 131 185 6.3E-20 T 23-04-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 RPE_RS14725 fa5154a88a5751b39cab8ded3172c76d 188 PANTHER PTHR30053:SF1 2 187 2.5E-77 T 23-04-2016 RPE_RS14725 fa5154a88a5751b39cab8ded3172c76d 188 Gene3D G3DSA:2.30.30.30 5 64 5.0E-18 T 23-04-2016 IPR014722 Ribosomal protein L2 domain 2 RPE_RS14725 fa5154a88a5751b39cab8ded3172c76d 188 ProSitePatterns PS01275 Elongation factor P signature. 151 170 - T 23-04-2016 IPR013852 Translation elongation factor P/YeiP, conserved site UniPathway: UPA00345 RPE_RS14725 fa5154a88a5751b39cab8ded3172c76d 188 SMART SM01185 68 122 5.7E-22 T 23-04-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 RPE_RS12115 da3d370abee6d7c86a780e7b814aaa66 479 SUPERFAMILY SSF55874 300 458 1.57E-37 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS12115 da3d370abee6d7c86a780e7b814aaa66 479 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 352 459 1.1E-19 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS12115 da3d370abee6d7c86a780e7b814aaa66 479 Pfam PF00512 His Kinase A (phospho-acceptor) domain 240 306 1.1E-6 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS12115 da3d370abee6d7c86a780e7b814aaa66 479 PANTHER PTHR24423:SF505 215 460 4.0E-74 T 23-04-2016 RPE_RS12115 da3d370abee6d7c86a780e7b814aaa66 479 Gene3D G3DSA:3.30.565.10 309 459 3.5E-36 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS12115 da3d370abee6d7c86a780e7b814aaa66 479 SMART SM00387 351 460 3.9E-30 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS12115 da3d370abee6d7c86a780e7b814aaa66 479 SUPERFAMILY SSF47384 230 304 8.63E-6 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS12115 da3d370abee6d7c86a780e7b814aaa66 479 Pfam PF05227 CHASE3 domain 43 177 2.8E-25 T 23-04-2016 IPR007891 CHASE3 RPE_RS12115 da3d370abee6d7c86a780e7b814aaa66 479 SMART SM00388 238 309 5.2E-5 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS12115 da3d370abee6d7c86a780e7b814aaa66 479 PRINTS PR00344 Bacterial sensor protein C-terminal signature 391 405 7.8E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS12115 da3d370abee6d7c86a780e7b814aaa66 479 PRINTS PR00344 Bacterial sensor protein C-terminal signature 444 457 7.8E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS12115 da3d370abee6d7c86a780e7b814aaa66 479 PRINTS PR00344 Bacterial sensor protein C-terminal signature 420 438 7.8E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS12115 da3d370abee6d7c86a780e7b814aaa66 479 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 419 7.8E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS12115 da3d370abee6d7c86a780e7b814aaa66 479 PANTHER PTHR24423 215 460 4.0E-74 T 23-04-2016 RPE_RS17825 e16e6df8c33f26a7445a6ab117904ef1 337 SUPERFAMILY SSF51735 117 288 4.42E-35 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS17825 e16e6df8c33f26a7445a6ab117904ef1 337 SMART SM00829 13 334 3.5E-10 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RPE_RS17825 e16e6df8c33f26a7445a6ab117904ef1 337 Gene3D G3DSA:3.90.180.10 19 169 2.2E-34 T 23-04-2016 IPR011032 GroES-like RPE_RS17825 e16e6df8c33f26a7445a6ab117904ef1 337 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 32 89 2.4E-5 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RPE_RS17825 e16e6df8c33f26a7445a6ab117904ef1 337 PANTHER PTHR11695:SF558 18 335 3.3E-128 T 23-04-2016 RPE_RS17825 e16e6df8c33f26a7445a6ab117904ef1 337 Pfam PF13602 Zinc-binding dehydrogenase 194 334 2.3E-21 T 23-04-2016 RPE_RS17825 e16e6df8c33f26a7445a6ab117904ef1 337 SUPERFAMILY SSF50129 15 146 3.14E-31 T 23-04-2016 IPR011032 GroES-like RPE_RS17825 e16e6df8c33f26a7445a6ab117904ef1 337 Gene3D G3DSA:3.40.50.720 170 256 1.7E-10 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS17825 e16e6df8c33f26a7445a6ab117904ef1 337 TIGRFAM TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein 2 337 6.7E-166 T 23-04-2016 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 GO:0008270 RPE_RS17825 e16e6df8c33f26a7445a6ab117904ef1 337 PANTHER PTHR11695 18 335 3.3E-128 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RPE_RS14985 2e85a8fcaa8117d59a2ac3799097ada4 255 PANTHER PTHR13887:SF25 21 249 9.0E-95 T 23-04-2016 RPE_RS14985 2e85a8fcaa8117d59a2ac3799097ada4 255 Pfam PF01323 DSBA-like thioredoxin domain 100 245 8.9E-23 T 23-04-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 RPE_RS14985 2e85a8fcaa8117d59a2ac3799097ada4 255 Gene3D G3DSA:3.40.30.10 77 248 1.4E-42 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS14985 2e85a8fcaa8117d59a2ac3799097ada4 255 PANTHER PTHR13887 21 249 9.0E-95 T 23-04-2016 RPE_RS14985 2e85a8fcaa8117d59a2ac3799097ada4 255 SUPERFAMILY SSF52833 76 246 1.08E-37 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS10445 d885e0f875d11e43ad5d58a8cbb0ed15 297 Gene3D G3DSA:3.40.190.10 164 266 3.1E-24 T 23-04-2016 RPE_RS10445 d885e0f875d11e43ad5d58a8cbb0ed15 297 SUPERFAMILY SSF46785 5 114 5.05E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS10445 d885e0f875d11e43ad5d58a8cbb0ed15 297 SUPERFAMILY SSF53850 92 294 1.05E-41 T 23-04-2016 RPE_RS10445 d885e0f875d11e43ad5d58a8cbb0ed15 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 2.3E-21 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS10445 d885e0f875d11e43ad5d58a8cbb0ed15 297 Gene3D G3DSA:1.10.10.10 7 89 2.7E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS10445 d885e0f875d11e43ad5d58a8cbb0ed15 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 1.6E-5 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS10445 d885e0f875d11e43ad5d58a8cbb0ed15 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 1.6E-5 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS10445 d885e0f875d11e43ad5d58a8cbb0ed15 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 1.6E-5 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS10445 d885e0f875d11e43ad5d58a8cbb0ed15 297 PANTHER PTHR30537:SF1 1 297 2.5E-174 T 23-04-2016 RPE_RS10445 d885e0f875d11e43ad5d58a8cbb0ed15 297 PANTHER PTHR30537 1 297 2.5E-174 T 23-04-2016 RPE_RS10445 d885e0f875d11e43ad5d58a8cbb0ed15 297 Pfam PF03466 LysR substrate binding domain 91 294 8.2E-38 T 23-04-2016 IPR005119 LysR, substrate-binding RPE_RS10445 d885e0f875d11e43ad5d58a8cbb0ed15 297 Gene3D G3DSA:3.40.190.10 94 160 5.4E-5 T 23-04-2016 RPE_RS01095 3de6882605c111e17869990182a1b606 518 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 5 495 1.0E-90 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RPE_RS01095 3de6882605c111e17869990182a1b606 518 PRINTS PR01806 Virulence factor MviN signature 31 50 4.8E-51 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RPE_RS01095 3de6882605c111e17869990182a1b606 518 PRINTS PR01806 Virulence factor MviN signature 50 66 4.8E-51 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RPE_RS01095 3de6882605c111e17869990182a1b606 518 PRINTS PR01806 Virulence factor MviN signature 130 154 4.8E-51 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RPE_RS01095 3de6882605c111e17869990182a1b606 518 PRINTS PR01806 Virulence factor MviN signature 407 424 4.8E-51 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RPE_RS01095 3de6882605c111e17869990182a1b606 518 PRINTS PR01806 Virulence factor MviN signature 154 175 4.8E-51 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RPE_RS01095 3de6882605c111e17869990182a1b606 518 PRINTS PR01806 Virulence factor MviN signature 257 283 4.8E-51 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RPE_RS01095 3de6882605c111e17869990182a1b606 518 PRINTS PR01806 Virulence factor MviN signature 355 374 4.8E-51 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RPE_RS01095 3de6882605c111e17869990182a1b606 518 PANTHER PTHR11206:SF90 216 444 4.5E-24 T 23-04-2016 RPE_RS01095 3de6882605c111e17869990182a1b606 518 Pfam PF03023 MviN-like protein 26 463 6.3E-82 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RPE_RS01095 3de6882605c111e17869990182a1b606 518 PANTHER PTHR11206 216 444 4.5E-24 T 23-04-2016 RPE_RS01095 3de6882605c111e17869990182a1b606 518 PIRSF PIRSF002869 1 512 8.8E-111 T 23-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RPE_RS23955 da4a131d436666adfe9fff73f286cc6d 350 SUPERFAMILY SSF90002 255 348 2.09E-27 T 23-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RPE_RS23955 da4a131d436666adfe9fff73f286cc6d 350 Gene3D G3DSA:3.40.50.300 7 205 5.6E-81 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS23955 da4a131d436666adfe9fff73f286cc6d 350 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 254 347 1.9E-24 T 23-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RPE_RS23955 da4a131d436666adfe9fff73f286cc6d 350 SUPERFAMILY SSF52540 8 214 2.06E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS23955 da4a131d436666adfe9fff73f286cc6d 350 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 10 184 1.4E-59 T 23-04-2016 IPR003495 CobW/HypB/UreG, nucleotide-binding domain RPE_RS23955 da4a131d436666adfe9fff73f286cc6d 350 PANTHER PTHR13748 7 350 2.5E-153 T 23-04-2016 RPE_RS23955 da4a131d436666adfe9fff73f286cc6d 350 PANTHER PTHR13748:SF43 7 350 2.5E-153 T 23-04-2016 RPE_RS23955 da4a131d436666adfe9fff73f286cc6d 350 Gene3D G3DSA:3.30.1220.10 235 349 1.8E-38 T 23-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RPE_RS23955 da4a131d436666adfe9fff73f286cc6d 350 SMART SM00833 254 348 2.3E-19 T 23-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RPE_RS02895 31936491b0bcfe0b3a34223816b57d65 513 Gene3D G3DSA:2.30.38.10 329 409 1.4E-25 T 23-04-2016 RPE_RS02895 31936491b0bcfe0b3a34223816b57d65 513 ProSitePatterns PS00455 Putative AMP-binding domain signature. 163 174 - T 23-04-2016 IPR020845 AMP-binding, conserved site RPE_RS02895 31936491b0bcfe0b3a34223816b57d65 513 Gene3D G3DSA:3.30.300.30 410 506 5.0E-29 T 23-04-2016 RPE_RS02895 31936491b0bcfe0b3a34223816b57d65 513 SUPERFAMILY SSF56801 4 508 1.57E-152 T 23-04-2016 RPE_RS02895 31936491b0bcfe0b3a34223816b57d65 513 Pfam PF00501 AMP-binding enzyme 10 416 1.9E-108 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS02895 31936491b0bcfe0b3a34223816b57d65 513 Pfam PF13193 AMP-binding enzyme C-terminal domain 424 498 3.7E-18 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RPE_RS02895 31936491b0bcfe0b3a34223816b57d65 513 Gene3D G3DSA:3.40.50.980 148 172 1.8E-44 T 23-04-2016 RPE_RS02895 31936491b0bcfe0b3a34223816b57d65 513 Gene3D G3DSA:3.40.50.980 4 114 1.8E-44 T 23-04-2016 RPE_RS02895 31936491b0bcfe0b3a34223816b57d65 513 Gene3D G3DSA:3.40.50.980 173 320 2.2E-37 T 23-04-2016 RPE_RS02895 31936491b0bcfe0b3a34223816b57d65 513 PANTHER PTHR24095 3 510 2.6E-145 T 23-04-2016 RPE_RS18580 12c5d98a41c5712310ec8b4e2c8a6512 176 PANTHER PTHR11603 5 167 6.1E-85 T 23-04-2016 RPE_RS18580 12c5d98a41c5712310ec8b4e2c8a6512 176 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 8 167 2.6E-56 T 23-04-2016 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530|UniPathway: UPA00792 RPE_RS18580 12c5d98a41c5712310ec8b4e2c8a6512 176 SUPERFAMILY SSF52540 5 169 3.52E-31 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18580 12c5d98a41c5712310ec8b4e2c8a6512 176 Gene3D G3DSA:3.40.50.300 5 168 2.6E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18580 12c5d98a41c5712310ec8b4e2c8a6512 176 Pfam PF01202 Shikimate kinase 14 165 6.4E-13 T 23-04-2016 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 RPE_RS02025 c526d7b95bd9927e7bb2df9a5cf75a42 434 SUPERFAMILY SSF111352 33 415 2.88E-124 T 23-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 RPE_RS02025 c526d7b95bd9927e7bb2df9a5cf75a42 434 PRINTS PR00342 Rhesus blood group protein signature 261 283 5.9E-8 T 23-04-2016 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 RPE_RS02025 c526d7b95bd9927e7bb2df9a5cf75a42 434 PRINTS PR00342 Rhesus blood group protein signature 230 248 5.9E-8 T 23-04-2016 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 RPE_RS02025 c526d7b95bd9927e7bb2df9a5cf75a42 434 PRINTS PR00342 Rhesus blood group protein signature 316 334 5.9E-8 T 23-04-2016 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 RPE_RS02025 c526d7b95bd9927e7bb2df9a5cf75a42 434 PRINTS PR00342 Rhesus blood group protein signature 135 151 5.9E-8 T 23-04-2016 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 RPE_RS02025 c526d7b95bd9927e7bb2df9a5cf75a42 434 PRINTS PR00342 Rhesus blood group protein signature 394 419 5.9E-8 T 23-04-2016 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 RPE_RS02025 c526d7b95bd9927e7bb2df9a5cf75a42 434 Gene3D G3DSA:1.10.3430.10 32 415 4.8E-133 T 23-04-2016 IPR029020 Ammonium/urea transporter RPE_RS02025 c526d7b95bd9927e7bb2df9a5cf75a42 434 TIGRFAM TIGR00836 amt: ammonium transporter 37 431 2.7E-133 T 23-04-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 RPE_RS02025 c526d7b95bd9927e7bb2df9a5cf75a42 434 Pfam PF00909 Ammonium Transporter Family 39 431 2.3E-120 T 23-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 RPE_RS02025 c526d7b95bd9927e7bb2df9a5cf75a42 434 PANTHER PTHR11730 9 431 8.2E-180 T 23-04-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 RPE_RS02025 c526d7b95bd9927e7bb2df9a5cf75a42 434 PANTHER PTHR11730:SF17 9 431 8.2E-180 T 23-04-2016 RPE_RS03570 37808d7bb9714327782bedcea83d9d15 207 PANTHER PTHR30327 18 207 1.7E-61 T 23-04-2016 RPE_RS03570 37808d7bb9714327782bedcea83d9d15 207 PANTHER PTHR30327:SF1 18 207 1.7E-61 T 23-04-2016 RPE_RS03570 37808d7bb9714327782bedcea83d9d15 207 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 17 207 36.65 T 23-04-2016 IPR003774 Protein of unknown function UPF0301 RPE_RS03570 37808d7bb9714327782bedcea83d9d15 207 SUPERFAMILY SSF143456 18 207 1.26E-60 T 23-04-2016 RPE_RS03570 37808d7bb9714327782bedcea83d9d15 207 Pfam PF02622 Uncharacterized ACR, COG1678 28 194 3.2E-47 T 23-04-2016 IPR003774 Protein of unknown function UPF0301 RPE_RS03570 37808d7bb9714327782bedcea83d9d15 207 Gene3D G3DSA:3.30.70.1300 59 150 1.8E-24 T 23-04-2016 RPE_RS03570 37808d7bb9714327782bedcea83d9d15 207 Gene3D G3DSA:3.40.1740.10 18 56 6.4E-34 T 23-04-2016 RPE_RS03570 37808d7bb9714327782bedcea83d9d15 207 Gene3D G3DSA:3.40.1740.10 151 197 6.4E-34 T 23-04-2016 RPE_RS22705 2fe3e510f7cca3287802bc5a15617be3 549 Gene3D G3DSA:3.40.50.980 13 190 2.3E-27 T 23-04-2016 RPE_RS22705 2fe3e510f7cca3287802bc5a15617be3 549 PANTHER PTHR24096 4 538 4.7E-249 T 23-04-2016 RPE_RS22705 2fe3e510f7cca3287802bc5a15617be3 549 ProSitePatterns PS00455 Putative AMP-binding domain signature. 183 194 - T 23-04-2016 IPR020845 AMP-binding, conserved site RPE_RS22705 2fe3e510f7cca3287802bc5a15617be3 549 Gene3D G3DSA:2.30.38.10 363 435 1.4E-16 T 23-04-2016 RPE_RS22705 2fe3e510f7cca3287802bc5a15617be3 549 SUPERFAMILY SSF56801 9 538 2.35E-125 T 23-04-2016 RPE_RS22705 2fe3e510f7cca3287802bc5a15617be3 549 Gene3D G3DSA:3.40.50.980 191 340 1.2E-28 T 23-04-2016 RPE_RS22705 2fe3e510f7cca3287802bc5a15617be3 549 PANTHER PTHR24096:SF53 4 538 4.7E-249 T 23-04-2016 RPE_RS22705 2fe3e510f7cca3287802bc5a15617be3 549 Pfam PF13193 AMP-binding enzyme C-terminal domain 451 525 7.6E-14 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RPE_RS22705 2fe3e510f7cca3287802bc5a15617be3 549 Pfam PF00501 AMP-binding enzyme 23 441 1.9E-82 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS22705 2fe3e510f7cca3287802bc5a15617be3 549 Gene3D G3DSA:3.30.300.30 436 534 1.5E-24 T 23-04-2016 RPE_RS05705 23f9ef320914457be7b920294d94520f 189 SUPERFAMILY SSF88946 13 87 1.33E-8 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS05705 23f9ef320914457be7b920294d94520f 189 Pfam PF04542 Sigma-70 region 2 15 78 2.6E-8 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS05705 23f9ef320914457be7b920294d94520f 189 Pfam PF08281 Sigma-70, region 4 116 165 2.0E-11 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS05705 23f9ef320914457be7b920294d94520f 189 SUPERFAMILY SSF88659 109 170 4.3E-12 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS05705 23f9ef320914457be7b920294d94520f 189 PANTHER PTHR30173 13 173 3.4E-18 T 23-04-2016 RPE_RS05705 23f9ef320914457be7b920294d94520f 189 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 36 168 3.6E-16 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS05705 23f9ef320914457be7b920294d94520f 189 Gene3D G3DSA:1.10.10.10 108 170 2.7E-14 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS05705 23f9ef320914457be7b920294d94520f 189 Gene3D G3DSA:1.10.1740.10 9 80 4.0E-10 T 23-04-2016 RPE_RS17820 b00a02e56ea7fb628a76b7dc186a029d 464 Pfam PF13365 Trypsin-like peptidase domain 89 225 5.5E-34 T 23-04-2016 RPE_RS17820 b00a02e56ea7fb628a76b7dc186a029d 464 SUPERFAMILY SSF50156 374 462 1.1E-15 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS17820 b00a02e56ea7fb628a76b7dc186a029d 464 SUPERFAMILY SSF50494 36 251 3.05E-62 T 23-04-2016 IPR009003 Peptidase S1, PA clan RPE_RS17820 b00a02e56ea7fb628a76b7dc186a029d 464 PANTHER PTHR22939:SF93 21 462 7.7E-138 T 23-04-2016 RPE_RS17820 b00a02e56ea7fb628a76b7dc186a029d 464 Pfam PF13180 PDZ domain 265 356 3.0E-12 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS17820 b00a02e56ea7fb628a76b7dc186a029d 464 Pfam PF13180 PDZ domain 397 438 1.2E-7 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS17820 b00a02e56ea7fb628a76b7dc186a029d 464 SMART SM00228 374 455 0.0045 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS17820 b00a02e56ea7fb628a76b7dc186a029d 464 SMART SM00228 265 347 8.5E-9 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS17820 b00a02e56ea7fb628a76b7dc186a029d 464 Gene3D G3DSA:2.30.42.10 374 462 9.6E-17 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS17820 b00a02e56ea7fb628a76b7dc186a029d 464 Gene3D G3DSA:2.30.42.10 267 363 1.4E-23 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS17820 b00a02e56ea7fb628a76b7dc186a029d 464 PANTHER PTHR22939 21 462 7.7E-138 T 23-04-2016 RPE_RS17820 b00a02e56ea7fb628a76b7dc186a029d 464 Gene3D G3DSA:2.40.10.10 153 266 6.3E-41 T 23-04-2016 RPE_RS17820 b00a02e56ea7fb628a76b7dc186a029d 464 PRINTS PR00834 HtrA/DegQ protease family signature 196 213 7.85E-52 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RPE_RS17820 b00a02e56ea7fb628a76b7dc186a029d 464 PRINTS PR00834 HtrA/DegQ protease family signature 119 139 7.85E-52 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RPE_RS17820 b00a02e56ea7fb628a76b7dc186a029d 464 PRINTS PR00834 HtrA/DegQ protease family signature 161 185 7.85E-52 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RPE_RS17820 b00a02e56ea7fb628a76b7dc186a029d 464 PRINTS PR00834 HtrA/DegQ protease family signature 305 317 7.85E-52 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RPE_RS17820 b00a02e56ea7fb628a76b7dc186a029d 464 PRINTS PR00834 HtrA/DegQ protease family signature 98 110 7.85E-52 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RPE_RS17820 b00a02e56ea7fb628a76b7dc186a029d 464 PRINTS PR00834 HtrA/DegQ protease family signature 218 235 7.85E-52 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RPE_RS17820 b00a02e56ea7fb628a76b7dc186a029d 464 SUPERFAMILY SSF50156 264 359 1.31E-20 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS17820 b00a02e56ea7fb628a76b7dc186a029d 464 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 37 461 4.2E-142 T 23-04-2016 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 RPE_RS17820 b00a02e56ea7fb628a76b7dc186a029d 464 Gene3D G3DSA:2.40.10.10 37 150 8.3E-35 T 23-04-2016 RPE_RS08430 0a2d453f99e6351271d038ce84069dcd 267 SUPERFAMILY SSF117396 7 266 1.06E-70 T 23-04-2016 IPR002763 Protein of unknown function DUF72 RPE_RS08430 0a2d453f99e6351271d038ce84069dcd 267 PANTHER PTHR30348:SF7 240 267 2.8E-131 T 23-04-2016 RPE_RS08430 0a2d453f99e6351271d038ce84069dcd 267 PANTHER PTHR30348:SF7 1 222 2.8E-131 T 23-04-2016 RPE_RS08430 0a2d453f99e6351271d038ce84069dcd 267 PANTHER PTHR30348 240 267 2.8E-131 T 23-04-2016 RPE_RS08430 0a2d453f99e6351271d038ce84069dcd 267 PANTHER PTHR30348 1 222 2.8E-131 T 23-04-2016 RPE_RS08430 0a2d453f99e6351271d038ce84069dcd 267 Gene3D G3DSA:3.20.20.410 4 266 2.3E-73 T 23-04-2016 IPR002763 Protein of unknown function DUF72 RPE_RS08430 0a2d453f99e6351271d038ce84069dcd 267 Pfam PF01904 Protein of unknown function DUF72 25 264 1.3E-56 T 23-04-2016 IPR002763 Protein of unknown function DUF72 RPE_RS06190 edda636cfcaf1e5cb78d84a3c687066a 212 PANTHER PTHR30055 5 209 2.1E-38 T 23-04-2016 RPE_RS06190 edda636cfcaf1e5cb78d84a3c687066a 212 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 66 6.5E-19 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS06190 edda636cfcaf1e5cb78d84a3c687066a 212 SUPERFAMILY SSF46689 16 76 2.49E-18 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS06190 edda636cfcaf1e5cb78d84a3c687066a 212 SUPERFAMILY SSF48498 95 198 1.98E-11 T 23-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RPE_RS06190 edda636cfcaf1e5cb78d84a3c687066a 212 Gene3D G3DSA:1.10.357.10 12 209 2.6E-55 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RPE_RS06190 edda636cfcaf1e5cb78d84a3c687066a 212 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 155 208 5.5E-15 T 23-04-2016 RPE_RS06190 edda636cfcaf1e5cb78d84a3c687066a 212 PANTHER PTHR30055:SF76 5 209 2.1E-38 T 23-04-2016 RPE_RS06190 edda636cfcaf1e5cb78d84a3c687066a 212 ProSitePatterns PS01081 TetR-type HTH domain signature. 34 65 - T 23-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RPE_RS06190 edda636cfcaf1e5cb78d84a3c687066a 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 1.37E-11 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS06190 edda636cfcaf1e5cb78d84a3c687066a 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 66 1.37E-11 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS06840 72b26a5690ef811b3bb697c9096d897c 357 TIGRFAM TIGR03055 photo_alph_chp2: putative photosynthetic complex assembly protein 2 7 248 1.7E-104 T 23-04-2016 IPR017496 Photosynthetic complex assembly protein 2, putative RPE_RS06840 72b26a5690ef811b3bb697c9096d897c 357 Pfam PF12291 Protein of unknown function (DUF3623) 2 251 2.4E-94 T 23-04-2016 IPR017496 Photosynthetic complex assembly protein 2, putative RPE_RS11610 760f6275409f6c9a57c09c24eb78e6a0 275 SMART SM00971 19 123 6.9E-54 T 23-04-2016 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|UniPathway: UPA00136 RPE_RS11610 760f6275409f6c9a57c09c24eb78e6a0 275 PANTHER PTHR23416 15 268 1.5E-127 T 23-04-2016 RPE_RS11610 760f6275409f6c9a57c09c24eb78e6a0 275 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 212 240 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 RPE_RS11610 760f6275409f6c9a57c09c24eb78e6a0 275 Gene3D G3DSA:1.10.3130.10 17 151 6.7E-44 T 23-04-2016 RPE_RS11610 760f6275409f6c9a57c09c24eb78e6a0 275 Gene3D G3DSA:2.160.10.10 153 257 4.7E-30 T 23-04-2016 RPE_RS11610 760f6275409f6c9a57c09c24eb78e6a0 275 PANTHER PTHR23416:SF2 15 268 1.5E-127 T 23-04-2016 RPE_RS11610 760f6275409f6c9a57c09c24eb78e6a0 275 Pfam PF06426 Serine acetyltransferase, N-terminal 19 123 2.1E-35 T 23-04-2016 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|UniPathway: UPA00136 RPE_RS11610 760f6275409f6c9a57c09c24eb78e6a0 275 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 92 252 6.5E-68 T 23-04-2016 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|UniPathway: UPA00136 RPE_RS11610 760f6275409f6c9a57c09c24eb78e6a0 275 SUPERFAMILY SSF51161 18 270 7.76E-65 T 23-04-2016 IPR011004 Trimeric LpxA-like RPE_RS11610 760f6275409f6c9a57c09c24eb78e6a0 275 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 203 236 3.6E-7 T 23-04-2016 IPR001451 Hexapeptide repeat RPE_RS01505 cfec2880ed06be411d362c4b637a6833 322 SUPERFAMILY SSF51735 5 144 7.9E-45 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS01505 cfec2880ed06be411d362c4b637a6833 322 PIRSF PIRSF000102 1 316 6.5E-102 T 23-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RPE_RS01505 cfec2880ed06be411d362c4b637a6833 322 PANTHER PTHR11540:SF16 1 310 4.8E-146 T 23-04-2016 RPE_RS01505 cfec2880ed06be411d362c4b637a6833 322 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 147 305 9.6E-31 T 23-04-2016 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 RPE_RS01505 cfec2880ed06be411d362c4b637a6833 322 PRINTS PR00086 L-lactate dehydrogenase signature 171 184 1.7E-28 T 23-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RPE_RS01505 cfec2880ed06be411d362c4b637a6833 322 PRINTS PR00086 L-lactate dehydrogenase signature 29 53 1.7E-28 T 23-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RPE_RS01505 cfec2880ed06be411d362c4b637a6833 322 PRINTS PR00086 L-lactate dehydrogenase signature 117 137 1.7E-28 T 23-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RPE_RS01505 cfec2880ed06be411d362c4b637a6833 322 PRINTS PR00086 L-lactate dehydrogenase signature 141 159 1.7E-28 T 23-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RPE_RS01505 cfec2880ed06be411d362c4b637a6833 322 PRINTS PR00086 L-lactate dehydrogenase signature 5 29 1.7E-28 T 23-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RPE_RS01505 cfec2880ed06be411d362c4b637a6833 322 Gene3D G3DSA:3.90.110.10 145 314 4.7E-62 T 23-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RPE_RS01505 cfec2880ed06be411d362c4b637a6833 322 Gene3D G3DSA:3.40.50.720 2 144 1.0E-46 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS01505 cfec2880ed06be411d362c4b637a6833 322 Hamap MF_00487 Malate dehydrogenase [mdh]. 4 313 41.294 T 23-04-2016 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 RPE_RS01505 cfec2880ed06be411d362c4b637a6833 322 PANTHER PTHR11540 1 310 4.8E-146 T 23-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RPE_RS01505 cfec2880ed06be411d362c4b637a6833 322 SUPERFAMILY SSF56327 146 314 1.73E-55 T 23-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RPE_RS01505 cfec2880ed06be411d362c4b637a6833 322 TIGRFAM TIGR01763 MalateDH_bact: malate dehydrogenase, NAD-dependent 3 308 3.0E-127 T 23-04-2016 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 RPE_RS01505 cfec2880ed06be411d362c4b637a6833 322 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 5 143 2.7E-37 T 23-04-2016 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 RPE_RS07145 a2c35f7459ecfea3a9073cb3d94da7c8 139 Pfam PF00472 RF-1 domain 6 132 4.4E-26 T 23-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RPE_RS07145 a2c35f7459ecfea3a9073cb3d94da7c8 139 SUPERFAMILY SSF75620 7 106 4.71E-13 T 23-04-2016 RPE_RS07145 a2c35f7459ecfea3a9073cb3d94da7c8 139 Gene3D G3DSA:3.30.160.200 4 107 1.5E-32 T 23-04-2016 RPE_RS07145 a2c35f7459ecfea3a9073cb3d94da7c8 139 PANTHER PTHR11075 7 139 4.7E-37 T 23-04-2016 RPE_RS01070 06d9396fdab0728fbdafb7113754c493 543 SUPERFAMILY SSF52540 16 207 1.75E-32 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01070 06d9396fdab0728fbdafb7113754c493 543 PANTHER PTHR19211:SF6 3 249 2.9E-161 T 23-04-2016 RPE_RS01070 06d9396fdab0728fbdafb7113754c493 543 PANTHER PTHR19211:SF6 278 521 2.9E-161 T 23-04-2016 RPE_RS01070 06d9396fdab0728fbdafb7113754c493 543 SMART SM00382 362 529 1.8E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS01070 06d9396fdab0728fbdafb7113754c493 543 SMART SM00382 29 321 3.1E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS01070 06d9396fdab0728fbdafb7113754c493 543 Gene3D G3DSA:3.40.50.300 4 238 4.7E-31 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01070 06d9396fdab0728fbdafb7113754c493 543 Gene3D G3DSA:3.40.50.300 335 516 7.5E-32 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01070 06d9396fdab0728fbdafb7113754c493 543 PANTHER PTHR19211 3 249 2.9E-161 T 23-04-2016 RPE_RS01070 06d9396fdab0728fbdafb7113754c493 543 PANTHER PTHR19211 278 521 2.9E-161 T 23-04-2016 RPE_RS01070 06d9396fdab0728fbdafb7113754c493 543 Pfam PF00005 ABC transporter 32 167 4.5E-16 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS01070 06d9396fdab0728fbdafb7113754c493 543 Pfam PF00005 ABC transporter 355 483 2.2E-16 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS01070 06d9396fdab0728fbdafb7113754c493 543 SUPERFAMILY SSF52540 350 516 3.61E-33 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS08045 a210f0295ebb4bbe68ddb2ea8ccf3642 591 Gene3D G3DSA:3.40.50.720 428 565 1.2E-35 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS08045 a210f0295ebb4bbe68ddb2ea8ccf3642 591 Pfam PF00999 Sodium/hydrogen exchanger family 19 399 7.4E-56 T 23-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RPE_RS08045 a210f0295ebb4bbe68ddb2ea8ccf3642 591 SUPERFAMILY SSF51735 430 559 7.88E-31 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS08045 a210f0295ebb4bbe68ddb2ea8ccf3642 591 Pfam PF02254 TrkA-N domain 431 545 1.9E-25 T 23-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RPE_RS08045 a210f0295ebb4bbe68ddb2ea8ccf3642 591 PANTHER PTHR16254:SF6 12 588 8.0E-174 T 23-04-2016 RPE_RS08045 a210f0295ebb4bbe68ddb2ea8ccf3642 591 PANTHER PTHR16254 12 588 8.0E-174 T 23-04-2016 RPE_RS07895 e6aaba05768a635c26e2dd55b14f314d 551 SUPERFAMILY SSF117457 371 546 6.67E-60 T 23-04-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 RPE_RS07895 e6aaba05768a635c26e2dd55b14f314d 551 PIRSF PIRSF001394 41 551 7.9E-226 T 23-04-2016 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 RPE_RS07895 e6aaba05768a635c26e2dd55b14f314d 551 PANTHER PTHR30389 13 549 0.0 T 23-04-2016 RPE_RS07895 e6aaba05768a635c26e2dd55b14f314d 551 Pfam PF05681 Fumarate hydratase (Fumerase) 63 335 1.4E-82 T 23-04-2016 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 RPE_RS07895 e6aaba05768a635c26e2dd55b14f314d 551 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 88 335 4.3E-30 T 23-04-2016 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 RPE_RS07895 e6aaba05768a635c26e2dd55b14f314d 551 Gene3D G3DSA:3.20.130.10 358 547 2.0E-72 T 23-04-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 RPE_RS07895 e6aaba05768a635c26e2dd55b14f314d 551 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 384 547 3.4E-53 T 23-04-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 RPE_RS07895 e6aaba05768a635c26e2dd55b14f314d 551 PANTHER PTHR30389:SF0 13 549 0.0 T 23-04-2016 RPE_RS07895 e6aaba05768a635c26e2dd55b14f314d 551 Pfam PF05683 Fumarase C-terminus 343 547 2.1E-90 T 23-04-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 RPE_RS07895 e6aaba05768a635c26e2dd55b14f314d 551 ProSitePatterns PS00163 Fumarate lyases signature. 466 475 - T 23-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 RPE_RS22490 c8ed1deb4c64062782d6c32c324539b7 493 SUPERFAMILY SSF52799 36 177 4.08E-33 T 23-04-2016 IPR029021 Protein-tyrosine phosphatase-like RPE_RS22490 c8ed1deb4c64062782d6c32c324539b7 493 Gene3D G3DSA:3.90.190.10 20 177 2.3E-39 T 23-04-2016 IPR029021 Protein-tyrosine phosphatase-like RPE_RS22490 c8ed1deb4c64062782d6c32c324539b7 493 PANTHER PTHR16222:SF12 167 492 4.4E-76 T 23-04-2016 RPE_RS22490 c8ed1deb4c64062782d6c32c324539b7 493 Pfam PF05706 Cyclin-dependent kinase inhibitor 3 (CDKN3) 43 145 1.6E-6 T 23-04-2016 IPR022778 CDKN3 domain GO:0004721|GO:0004725 KEGG: 04660+3.1.3.16 RPE_RS22490 c8ed1deb4c64062782d6c32c324539b7 493 SMART SM00404 84 180 2.3E-5 T 23-04-2016 IPR003595 Protein-tyrosine phosphatase, catalytic RPE_RS22490 c8ed1deb4c64062782d6c32c324539b7 493 Pfam PF03747 ADP-ribosylglycohydrolase 196 464 3.4E-69 T 23-04-2016 IPR005502 ADP-ribosylation/Crystallin J1 RPE_RS22490 c8ed1deb4c64062782d6c32c324539b7 493 PANTHER PTHR16222 167 492 4.4E-76 T 23-04-2016 RPE_RS22490 c8ed1deb4c64062782d6c32c324539b7 493 SUPERFAMILY SSF101478 190 485 6.15E-79 T 23-04-2016 IPR005502 ADP-ribosylation/Crystallin J1 RPE_RS16005 37aaf7917e706b6463acb344382e3594 268 SUPERFAMILY SSF161098 65 246 3.79E-32 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS16005 37aaf7917e706b6463acb344382e3594 268 Gene3D G3DSA:1.10.3720.10 66 256 9.5E-23 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS16005 37aaf7917e706b6463acb344382e3594 268 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 256 3.5E-24 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS16005 37aaf7917e706b6463acb344382e3594 268 PANTHER PTHR30151:SF22 1 267 6.1E-167 T 23-04-2016 RPE_RS16005 37aaf7917e706b6463acb344382e3594 268 PANTHER PTHR30151 1 267 6.1E-167 T 23-04-2016 RPE_RS09725 6f9a4ab3f11d435c19226ae7ae38830a 411 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 12 216 2.4E-55 T 23-04-2016 IPR003495 CobW/HypB/UreG, nucleotide-binding domain RPE_RS09725 6f9a4ab3f11d435c19226ae7ae38830a 411 SUPERFAMILY SSF52540 8 324 3.72E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS09725 6f9a4ab3f11d435c19226ae7ae38830a 411 SMART SM00833 264 381 2.2E-46 T 23-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RPE_RS09725 6f9a4ab3f11d435c19226ae7ae38830a 411 Gene3D G3DSA:3.30.1220.10 254 381 4.7E-13 T 23-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RPE_RS09725 6f9a4ab3f11d435c19226ae7ae38830a 411 PANTHER PTHR13748 8 337 8.4E-173 T 23-04-2016 RPE_RS09725 6f9a4ab3f11d435c19226ae7ae38830a 411 PANTHER PTHR13748:SF4 353 395 8.4E-173 T 23-04-2016 RPE_RS09725 6f9a4ab3f11d435c19226ae7ae38830a 411 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 264 381 4.6E-24 T 23-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RPE_RS09725 6f9a4ab3f11d435c19226ae7ae38830a 411 Gene3D G3DSA:3.40.50.300 10 235 3.7E-74 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS09725 6f9a4ab3f11d435c19226ae7ae38830a 411 PANTHER PTHR13748 353 395 8.4E-173 T 23-04-2016 RPE_RS09725 6f9a4ab3f11d435c19226ae7ae38830a 411 PANTHER PTHR13748:SF4 8 337 8.4E-173 T 23-04-2016 RPE_RS24465 dada586da5c753f316bcf34753644d74 465 Gene3D G3DSA:3.30.1330.60 357 463 2.1E-36 T 23-04-2016 IPR006665 OmpA-like domain RPE_RS24465 dada586da5c753f316bcf34753644d74 465 PRINTS PR01021 OMPA domain signature 408 424 3.7E-10 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RPE_RS24465 dada586da5c753f316bcf34753644d74 465 PRINTS PR01021 OMPA domain signature 363 385 3.7E-10 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RPE_RS24465 dada586da5c753f316bcf34753644d74 465 PRINTS PR01021 OMPA domain signature 393 408 3.7E-10 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RPE_RS24465 dada586da5c753f316bcf34753644d74 465 Pfam PF00691 OmpA family 363 457 1.2E-19 T 23-04-2016 IPR006665 OmpA-like domain RPE_RS24465 dada586da5c753f316bcf34753644d74 465 PANTHER PTHR30128 361 465 7.9E-38 T 23-04-2016 RPE_RS24465 dada586da5c753f316bcf34753644d74 465 SUPERFAMILY SSF103088 346 463 2.09E-33 T 23-04-2016 IPR006665 OmpA-like domain RPE_RS12225 c0eb404637da26eebb7cec0e01175a5b 528 Pfam PF13007 Transposase C of IS166 homeodomain 42 119 2.8E-14 T 23-04-2016 IPR024463 Transposase TnpC, homeodomain RPE_RS12225 c0eb404637da26eebb7cec0e01175a5b 528 PANTHER PTHR33678:SF1 8 514 2.9E-94 T 23-04-2016 RPE_RS12225 c0eb404637da26eebb7cec0e01175a5b 528 Pfam PF13005 zinc-finger binding domain of transposase IS66 124 169 3.1E-12 T 23-04-2016 IPR024474 Zinc-finger binding domain of transposase IS66 RPE_RS12225 c0eb404637da26eebb7cec0e01175a5b 528 Pfam PF13817 IS66 C-terminal element 479 515 7.0E-18 T 23-04-2016 RPE_RS12225 c0eb404637da26eebb7cec0e01175a5b 528 PANTHER PTHR33678 8 514 2.9E-94 T 23-04-2016 RPE_RS12225 c0eb404637da26eebb7cec0e01175a5b 528 Pfam PF03050 Transposase IS66 family 184 471 4.5E-90 T 23-04-2016 IPR004291 Transposase, IS66 RPE_RS20050 c0eb404637da26eebb7cec0e01175a5b 528 Pfam PF13007 Transposase C of IS166 homeodomain 42 119 2.8E-14 T 23-04-2016 IPR024463 Transposase TnpC, homeodomain RPE_RS20050 c0eb404637da26eebb7cec0e01175a5b 528 PANTHER PTHR33678:SF1 8 514 2.9E-94 T 23-04-2016 RPE_RS20050 c0eb404637da26eebb7cec0e01175a5b 528 Pfam PF13005 zinc-finger binding domain of transposase IS66 124 169 3.1E-12 T 23-04-2016 IPR024474 Zinc-finger binding domain of transposase IS66 RPE_RS20050 c0eb404637da26eebb7cec0e01175a5b 528 Pfam PF13817 IS66 C-terminal element 479 515 7.0E-18 T 23-04-2016 RPE_RS20050 c0eb404637da26eebb7cec0e01175a5b 528 PANTHER PTHR33678 8 514 2.9E-94 T 23-04-2016 RPE_RS20050 c0eb404637da26eebb7cec0e01175a5b 528 Pfam PF03050 Transposase IS66 family 184 471 4.5E-90 T 23-04-2016 IPR004291 Transposase, IS66 RPE_RS17615 c0eb404637da26eebb7cec0e01175a5b 528 Pfam PF13007 Transposase C of IS166 homeodomain 42 119 2.8E-14 T 23-04-2016 IPR024463 Transposase TnpC, homeodomain RPE_RS17615 c0eb404637da26eebb7cec0e01175a5b 528 PANTHER PTHR33678:SF1 8 514 2.9E-94 T 23-04-2016 RPE_RS17615 c0eb404637da26eebb7cec0e01175a5b 528 Pfam PF13005 zinc-finger binding domain of transposase IS66 124 169 3.1E-12 T 23-04-2016 IPR024474 Zinc-finger binding domain of transposase IS66 RPE_RS17615 c0eb404637da26eebb7cec0e01175a5b 528 Pfam PF13817 IS66 C-terminal element 479 515 7.0E-18 T 23-04-2016 RPE_RS17615 c0eb404637da26eebb7cec0e01175a5b 528 PANTHER PTHR33678 8 514 2.9E-94 T 23-04-2016 RPE_RS17615 c0eb404637da26eebb7cec0e01175a5b 528 Pfam PF03050 Transposase IS66 family 184 471 4.5E-90 T 23-04-2016 IPR004291 Transposase, IS66 RPE_RS05105 c0eb404637da26eebb7cec0e01175a5b 528 Pfam PF13007 Transposase C of IS166 homeodomain 42 119 2.8E-14 T 23-04-2016 IPR024463 Transposase TnpC, homeodomain RPE_RS05105 c0eb404637da26eebb7cec0e01175a5b 528 PANTHER PTHR33678:SF1 8 514 2.9E-94 T 23-04-2016 RPE_RS05105 c0eb404637da26eebb7cec0e01175a5b 528 Pfam PF13005 zinc-finger binding domain of transposase IS66 124 169 3.1E-12 T 23-04-2016 IPR024474 Zinc-finger binding domain of transposase IS66 RPE_RS05105 c0eb404637da26eebb7cec0e01175a5b 528 Pfam PF13817 IS66 C-terminal element 479 515 7.0E-18 T 23-04-2016 RPE_RS05105 c0eb404637da26eebb7cec0e01175a5b 528 PANTHER PTHR33678 8 514 2.9E-94 T 23-04-2016 RPE_RS05105 c0eb404637da26eebb7cec0e01175a5b 528 Pfam PF03050 Transposase IS66 family 184 471 4.5E-90 T 23-04-2016 IPR004291 Transposase, IS66 RPE_RS05735 c0eb404637da26eebb7cec0e01175a5b 528 Pfam PF13007 Transposase C of IS166 homeodomain 42 119 2.8E-14 T 23-04-2016 IPR024463 Transposase TnpC, homeodomain RPE_RS05735 c0eb404637da26eebb7cec0e01175a5b 528 PANTHER PTHR33678:SF1 8 514 2.9E-94 T 23-04-2016 RPE_RS05735 c0eb404637da26eebb7cec0e01175a5b 528 Pfam PF13005 zinc-finger binding domain of transposase IS66 124 169 3.1E-12 T 23-04-2016 IPR024474 Zinc-finger binding domain of transposase IS66 RPE_RS05735 c0eb404637da26eebb7cec0e01175a5b 528 Pfam PF13817 IS66 C-terminal element 479 515 7.0E-18 T 23-04-2016 RPE_RS05735 c0eb404637da26eebb7cec0e01175a5b 528 PANTHER PTHR33678 8 514 2.9E-94 T 23-04-2016 RPE_RS05735 c0eb404637da26eebb7cec0e01175a5b 528 Pfam PF03050 Transposase IS66 family 184 471 4.5E-90 T 23-04-2016 IPR004291 Transposase, IS66 RPE_RS21880 48e1e317a0fa5d05bc2be1145ed3fd57 1345 SUPERFAMILY SSF55073 273 402 3.92E-15 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS21880 48e1e317a0fa5d05bc2be1145ed3fd57 1345 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 35 145 4.1E-6 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RPE_RS21880 48e1e317a0fa5d05bc2be1145ed3fd57 1345 PANTHER PTHR16305:SF28 6 879 1.8E-141 T 23-04-2016 RPE_RS21880 48e1e317a0fa5d05bc2be1145ed3fd57 1345 PANTHER PTHR16305:SF28 1280 1330 1.8E-141 T 23-04-2016 RPE_RS21880 48e1e317a0fa5d05bc2be1145ed3fd57 1345 Pfam PF13191 AAA ATPase domain 419 594 2.4E-20 T 23-04-2016 RPE_RS21880 48e1e317a0fa5d05bc2be1145ed3fd57 1345 Gene3D G3DSA:1.25.40.10 882 903 5.2E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS21880 48e1e317a0fa5d05bc2be1145ed3fd57 1345 Gene3D G3DSA:1.25.40.10 1243 1291 5.2E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS21880 48e1e317a0fa5d05bc2be1145ed3fd57 1345 Gene3D G3DSA:1.25.40.10 961 1111 5.2E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS21880 48e1e317a0fa5d05bc2be1145ed3fd57 1345 PANTHER PTHR16305 6 879 1.8E-141 T 23-04-2016 RPE_RS21880 48e1e317a0fa5d05bc2be1145ed3fd57 1345 PANTHER PTHR16305 1280 1330 1.8E-141 T 23-04-2016 RPE_RS21880 48e1e317a0fa5d05bc2be1145ed3fd57 1345 Gene3D G3DSA:3.30.70.1230 260 400 6.9E-9 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RPE_RS21880 48e1e317a0fa5d05bc2be1145ed3fd57 1345 Gene3D G3DSA:3.30.70.1230 34 142 6.8E-14 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RPE_RS21880 48e1e317a0fa5d05bc2be1145ed3fd57 1345 SUPERFAMILY SSF55073 33 146 1.3E-16 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS21880 48e1e317a0fa5d05bc2be1145ed3fd57 1345 SUPERFAMILY SSF52540 522 673 7.77E-9 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS21880 48e1e317a0fa5d05bc2be1145ed3fd57 1345 SUPERFAMILY SSF52540 401 466 7.77E-9 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS21880 48e1e317a0fa5d05bc2be1145ed3fd57 1345 SUPERFAMILY SSF48452 983 1067 2.42E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS21880 48e1e317a0fa5d05bc2be1145ed3fd57 1345 SUPERFAMILY SSF48452 879 911 2.42E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS04640 b5667f84021190b3b9087bf597c5325f 286 Gene3D G3DSA:3.40.50.150 1 283 4.5E-99 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS04640 b5667f84021190b3b9087bf597c5325f 286 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 1 273 39.527 T 23-04-2016 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 RPE_RS04640 b5667f84021190b3b9087bf597c5325f 286 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 34 280 3.8E-73 T 23-04-2016 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 RPE_RS04640 b5667f84021190b3b9087bf597c5325f 286 PANTHER PTHR37426 1 286 1.1E-132 T 23-04-2016 RPE_RS04640 b5667f84021190b3b9087bf597c5325f 286 SUPERFAMILY SSF53335 8 283 1.4E-83 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS04640 b5667f84021190b3b9087bf597c5325f 286 PANTHER PTHR37426:SF1 1 286 1.1E-132 T 23-04-2016 RPE_RS17125 33ecc9e2629b3b24fb5d3482634b0f7e 218 Gene3D G3DSA:1.20.1050.10 94 209 3.4E-42 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RPE_RS17125 33ecc9e2629b3b24fb5d3482634b0f7e 218 Pfam PF13410 Glutathione S-transferase, C-terminal domain 148 204 1.9E-6 T 23-04-2016 RPE_RS17125 33ecc9e2629b3b24fb5d3482634b0f7e 218 PANTHER PTHR11260:SF144 9 200 2.3E-64 T 23-04-2016 RPE_RS17125 33ecc9e2629b3b24fb5d3482634b0f7e 218 SUPERFAMILY SSF47616 85 202 2.23E-18 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RPE_RS17125 33ecc9e2629b3b24fb5d3482634b0f7e 218 Gene3D G3DSA:3.40.30.10 12 93 1.2E-21 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS17125 33ecc9e2629b3b24fb5d3482634b0f7e 218 SUPERFAMILY SSF52833 3 87 1.98E-22 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS17125 33ecc9e2629b3b24fb5d3482634b0f7e 218 PANTHER PTHR11260 9 200 2.3E-64 T 23-04-2016 RPE_RS17125 33ecc9e2629b3b24fb5d3482634b0f7e 218 Pfam PF13417 Glutathione S-transferase, N-terminal domain 11 81 8.2E-13 T 23-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RPE_RS04335 2e7c0e7423519aea6dfb1a23eed8f1af 98 Gene3D G3DSA:2.30.33.40 5 97 9.2E-40 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RPE_RS04335 2e7c0e7423519aea6dfb1a23eed8f1af 98 SUPERFAMILY SSF50129 4 97 5.18E-36 T 23-04-2016 IPR011032 GroES-like RPE_RS04335 2e7c0e7423519aea6dfb1a23eed8f1af 98 PRINTS PR00297 10kDa chaperonin signature 84 97 4.3E-35 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RPE_RS04335 2e7c0e7423519aea6dfb1a23eed8f1af 98 PRINTS PR00297 10kDa chaperonin signature 28 49 4.3E-35 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RPE_RS04335 2e7c0e7423519aea6dfb1a23eed8f1af 98 PRINTS PR00297 10kDa chaperonin signature 6 21 4.3E-35 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RPE_RS04335 2e7c0e7423519aea6dfb1a23eed8f1af 98 PRINTS PR00297 10kDa chaperonin signature 63 75 4.3E-35 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RPE_RS04335 2e7c0e7423519aea6dfb1a23eed8f1af 98 Hamap MF_00580 10 kDa chaperonin [groS]. 5 98 27.083 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RPE_RS04335 2e7c0e7423519aea6dfb1a23eed8f1af 98 Pfam PF00166 Chaperonin 10 Kd subunit 5 96 9.3E-37 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RPE_RS04335 2e7c0e7423519aea6dfb1a23eed8f1af 98 PANTHER PTHR10772 4 97 1.8E-49 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RPE_RS04335 2e7c0e7423519aea6dfb1a23eed8f1af 98 SMART SM00883 5 97 3.5E-61 T 23-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RPE_RS04335 2e7c0e7423519aea6dfb1a23eed8f1af 98 ProSitePatterns PS00681 Chaperonins cpn10 signature. 6 30 - T 23-04-2016 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 RPE_RS23215 2b99dcf6f936c524373e9b10548522e0 72 Pfam PF11390 NADH-dependant formate dehydrogenase delta subunit FdsD 5 64 2.4E-26 T 23-04-2016 IPR021074 Formate dehydrogenase, delta subunit RPE_RS16010 d485dd5bb6aeffb860fb64b8884edad1 281 Gene3D G3DSA:3.40.50.300 40 243 1.6E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16010 d485dd5bb6aeffb860fb64b8884edad1 281 SMART SM00382 64 240 1.1E-15 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS16010 d485dd5bb6aeffb860fb64b8884edad1 281 Pfam PF00005 ABC transporter 55 190 1.3E-29 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS16010 d485dd5bb6aeffb860fb64b8884edad1 281 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS16010 d485dd5bb6aeffb860fb64b8884edad1 281 SUPERFAMILY SSF52540 40 243 5.88E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16010 d485dd5bb6aeffb860fb64b8884edad1 281 PANTHER PTHR24220:SF365 41 276 1.7E-126 T 23-04-2016 IPR017875 Aliphatic sulfonates import ATP-binding protein SsuB GO:0005215|GO:0005524|GO:0005886|GO:0006810 RPE_RS16010 d485dd5bb6aeffb860fb64b8884edad1 281 PANTHER PTHR24220 41 276 1.7E-126 T 23-04-2016 RPE_RS17105 0a151ddbfd6212e0efa8c4d2be376bbf 283 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 8 283 2.7E-88 T 23-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 RPE_RS17105 0a151ddbfd6212e0efa8c4d2be376bbf 283 SUPERFAMILY SSF52374 5 283 2.95E-98 T 23-04-2016 RPE_RS17105 0a151ddbfd6212e0efa8c4d2be376bbf 283 PANTHER PTHR21299:SF1 1 281 2.6E-122 T 23-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 RPE_RS17105 0a151ddbfd6212e0efa8c4d2be376bbf 283 Hamap MF_00158 Pantothenate synthetase [panC]. 6 283 37.447 T 23-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 RPE_RS17105 0a151ddbfd6212e0efa8c4d2be376bbf 283 PANTHER PTHR21299 1 281 2.6E-122 T 23-04-2016 RPE_RS17105 0a151ddbfd6212e0efa8c4d2be376bbf 283 Pfam PF02569 Pantoate-beta-alanine ligase 7 281 3.1E-94 T 23-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 RPE_RS17105 0a151ddbfd6212e0efa8c4d2be376bbf 283 Gene3D G3DSA:3.30.1300.10 180 283 1.8E-31 T 23-04-2016 RPE_RS17105 0a151ddbfd6212e0efa8c4d2be376bbf 283 Gene3D G3DSA:3.40.50.620 5 179 1.0E-66 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS01965 8d37589695273ac1cd2422c86c8398e6 221 Pfam PF01168 Alanine racemase, N-terminal domain 19 220 1.5E-23 T 23-04-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RPE_RS01965 8d37589695273ac1cd2422c86c8398e6 221 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 7 221 6.1E-51 T 23-04-2016 IPR011078 Uncharacterised protein family UPF0001 RPE_RS01965 8d37589695273ac1cd2422c86c8398e6 221 PIRSF PIRSF004848 1 221 1.0E-60 T 23-04-2016 IPR011078 Uncharacterised protein family UPF0001 RPE_RS01965 8d37589695273ac1cd2422c86c8398e6 221 SUPERFAMILY SSF51419 4 219 1.44E-70 T 23-04-2016 IPR029066 PLP-binding barrel RPE_RS01965 8d37589695273ac1cd2422c86c8398e6 221 PANTHER PTHR10146 1 221 2.5E-80 T 23-04-2016 IPR011078 Uncharacterised protein family UPF0001 RPE_RS01965 8d37589695273ac1cd2422c86c8398e6 221 Gene3D G3DSA:3.20.20.10 3 221 5.2E-77 T 23-04-2016 IPR029066 PLP-binding barrel RPE_RS00960 a7d5382154ee70b46543486ca9d3e69e 519 PANTHER PTHR23501:SF69 5 519 6.9E-205 T 23-04-2016 RPE_RS00960 a7d5382154ee70b46543486ca9d3e69e 519 Gene3D G3DSA:1.20.1250.20 14 199 3.2E-34 T 23-04-2016 RPE_RS00960 a7d5382154ee70b46543486ca9d3e69e 519 Pfam PF07690 Major Facilitator Superfamily 24 414 2.1E-52 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RPE_RS00960 a7d5382154ee70b46543486ca9d3e69e 519 SUPERFAMILY SSF103473 253 424 7.72E-70 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS00960 a7d5382154ee70b46543486ca9d3e69e 519 SUPERFAMILY SSF103473 8 204 7.72E-70 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS00960 a7d5382154ee70b46543486ca9d3e69e 519 SUPERFAMILY SSF103473 479 494 7.72E-70 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS00960 a7d5382154ee70b46543486ca9d3e69e 519 Gene3D G3DSA:1.20.1250.20 269 420 7.1E-13 T 23-04-2016 RPE_RS00960 a7d5382154ee70b46543486ca9d3e69e 519 PANTHER PTHR23501 5 519 6.9E-205 T 23-04-2016 RPE_RS00960 a7d5382154ee70b46543486ca9d3e69e 519 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 18 483 1.9E-111 T 23-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 RPE_RS12125 05770a84e3e187ee1b77703f391c6af6 321 PANTHER PTHR11562 11 321 1.9E-132 T 23-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RPE_RS12125 05770a84e3e187ee1b77703f391c6af6 321 Pfam PF01545 Cation efflux family 28 240 3.2E-34 T 23-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RPE_RS12125 05770a84e3e187ee1b77703f391c6af6 321 PANTHER PTHR11562:SF40 11 321 1.9E-132 T 23-04-2016 RPE_RS12125 05770a84e3e187ee1b77703f391c6af6 321 SUPERFAMILY SSF161111 20 241 8.76E-50 T 23-04-2016 RPE_RS12125 05770a84e3e187ee1b77703f391c6af6 321 Gene3D G3DSA:1.20.1510.10 23 240 3.7E-49 T 23-04-2016 IPR027469 Cation efflux protein transmembrane domain RPE_RS12125 05770a84e3e187ee1b77703f391c6af6 321 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 23 314 3.7E-69 T 23-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RPE_RS15380 cf799c6d7dd98e4b8d2c85be2f03cfb5 600 Gene3D G3DSA:3.50.50.60 169 368 3.3E-46 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS15380 cf799c6d7dd98e4b8d2c85be2f03cfb5 600 SUPERFAMILY SSF51905 453 571 7.61E-39 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS15380 cf799c6d7dd98e4b8d2c85be2f03cfb5 600 SUPERFAMILY SSF51905 162 363 7.61E-39 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS15380 cf799c6d7dd98e4b8d2c85be2f03cfb5 600 SUPERFAMILY SSF54427 16 115 1.19E-8 T 23-04-2016 IPR032710 NTF2-like domain RPE_RS15380 cf799c6d7dd98e4b8d2c85be2f03cfb5 600 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 167 189 3.1E-8 T 23-04-2016 RPE_RS15380 cf799c6d7dd98e4b8d2c85be2f03cfb5 600 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 291 300 3.1E-8 T 23-04-2016 RPE_RS15380 cf799c6d7dd98e4b8d2c85be2f03cfb5 600 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 332 357 3.1E-8 T 23-04-2016 RPE_RS15380 cf799c6d7dd98e4b8d2c85be2f03cfb5 600 Gene3D G3DSA:3.10.450.50 13 115 3.9E-6 T 23-04-2016 IPR032710 NTF2-like domain RPE_RS15380 cf799c6d7dd98e4b8d2c85be2f03cfb5 600 Gene3D G3DSA:3.50.50.60 447 510 9.5E-4 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS15380 cf799c6d7dd98e4b8d2c85be2f03cfb5 600 PANTHER PTHR23023 164 565 2.9E-125 T 23-04-2016 RPE_RS15380 cf799c6d7dd98e4b8d2c85be2f03cfb5 600 PANTHER PTHR23023:SF123 164 565 2.9E-125 T 23-04-2016 RPE_RS15380 cf799c6d7dd98e4b8d2c85be2f03cfb5 600 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 169 365 4.2E-20 T 23-04-2016 RPE_RS11060 030f9d83ca85d6dafc00db4adafc3d4f 329 TIGRFAM TIGR03709 PPK2_rel_1: polyphosphate:nucleotide phosphotransferase, PPK2 family 19 284 6.4E-115 T 23-04-2016 IPR022300 Polyphosphate:nucleotide phosphotransferase, PPK2 GO:0006797|GO:0016776 RPE_RS11060 030f9d83ca85d6dafc00db4adafc3d4f 329 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 41 274 1.7E-65 T 23-04-2016 IPR022488 Polyphosphate kinase-2-related RPE_RS11060 030f9d83ca85d6dafc00db4adafc3d4f 329 Gene3D G3DSA:3.40.50.300 17 298 3.2E-97 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS11060 030f9d83ca85d6dafc00db4adafc3d4f 329 SUPERFAMILY SSF52540 73 260 7.38E-13 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS11060 030f9d83ca85d6dafc00db4adafc3d4f 329 PANTHER PTHR34383 8 308 3.8E-125 T 23-04-2016 RPE_RS14285 6ccb8909b3cbadefa34479abb89001a0 385 PANTHER PTHR12526:SF387 7 375 2.6E-76 T 23-04-2016 RPE_RS14285 6ccb8909b3cbadefa34479abb89001a0 385 Gene3D G3DSA:3.40.50.2000 200 357 4.5E-25 T 23-04-2016 RPE_RS14285 6ccb8909b3cbadefa34479abb89001a0 385 SUPERFAMILY SSF53756 17 375 1.57E-67 T 23-04-2016 RPE_RS14285 6ccb8909b3cbadefa34479abb89001a0 385 PANTHER PTHR12526 7 375 2.6E-76 T 23-04-2016 RPE_RS14285 6ccb8909b3cbadefa34479abb89001a0 385 Pfam PF13579 Glycosyl transferase 4-like domain 21 186 3.2E-21 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RPE_RS14285 6ccb8909b3cbadefa34479abb89001a0 385 Pfam PF13692 Glycosyl transferases group 1 203 339 3.3E-27 T 23-04-2016 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 Gene3D G3DSA:2.30.150.10 601 667 7.0E-27 T 23-04-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 Pfam PF04561 RNA polymerase Rpb2, domain 2 179 232 2.5E-5 T 23-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 Pfam PF04561 RNA polymerase Rpb2, domain 2 356 463 4.1E-22 T 23-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1086 1098 - T 23-04-2016 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 Gene3D G3DSA:3.90.1100.10 454 600 3.6E-149 T 23-04-2016 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 Gene3D G3DSA:3.90.1100.10 670 724 3.6E-149 T 23-04-2016 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 Gene3D G3DSA:3.90.1100.10 20 158 3.6E-149 T 23-04-2016 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 Pfam PF04560 RNA polymerase Rpb2, domain 7 1286 1360 1.9E-26 T 23-04-2016 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 Pfam PF04565 RNA polymerase Rpb2, domain 3 522 590 7.8E-32 T 23-04-2016 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 Pfam PF00562 RNA polymerase Rpb2, domain 6 729 1284 1.3E-167 T 23-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 10 1358 0.0 T 23-04-2016 IPR010243 DNA-directed RNA polymerase, beta subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 Pfam PF10385 RNA polymerase beta subunit external 1 domain 600 667 3.7E-24 T 23-04-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 Gene3D G3DSA:2.40.270.10 1083 1262 9.2E-90 T 23-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 Gene3D G3DSA:2.40.270.10 803 830 9.2E-90 T 23-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 Pfam PF04563 RNA polymerase beta subunit 28 506 5.8E-33 T 23-04-2016 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 Gene3D G3DSA:2.40.50.150 837 947 5.7E-59 T 23-04-2016 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 Gene3D G3DSA:2.40.50.150 1068 1082 5.7E-59 T 23-04-2016 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 SUPERFAMILY SSF64484 12 233 0.0 T 23-04-2016 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 SUPERFAMILY SSF64484 1062 1362 0.0 T 23-04-2016 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 SUPERFAMILY SSF64484 352 949 0.0 T 23-04-2016 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 PANTHER PTHR20856 349 736 0.0 T 23-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 PANTHER PTHR20856 1056 1151 0.0 T 23-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 PANTHER PTHR20856 753 940 0.0 T 23-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 PANTHER PTHR20856 3 238 0.0 T 23-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 PANTHER PTHR20856 1202 1366 0.0 T 23-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 Gene3D G3DSA:3.90.1110.10 160 237 1.2E-68 T 23-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 Gene3D G3DSA:3.90.1110.10 355 453 1.2E-68 T 23-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 14 1362 12.468 T 23-04-2016 IPR010243 DNA-directed RNA polymerase, beta subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 PANTHER PTHR20856:SF20 349 736 0.0 T 23-04-2016 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 PANTHER PTHR20856:SF20 1056 1151 0.0 T 23-04-2016 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 PANTHER PTHR20856:SF20 753 940 0.0 T 23-04-2016 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 PANTHER PTHR20856:SF20 3 238 0.0 T 23-04-2016 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 PANTHER PTHR20856:SF20 1202 1366 0.0 T 23-04-2016 RPE_RS18020 f2eb9b1fabfec41c569ae96acd36b298 1373 Gene3D G3DSA:2.40.50.100 726 802 1.8E-29 T 23-04-2016 RPE_RS19750 8f76aa3ca539999f303f1fe058556507 225 Pfam PF00005 ABC transporter 25 174 1.7E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS19750 8f76aa3ca539999f303f1fe058556507 225 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS19750 8f76aa3ca539999f303f1fe058556507 225 PANTHER PTHR24220:SF86 6 225 2.3E-100 T 23-04-2016 RPE_RS19750 8f76aa3ca539999f303f1fe058556507 225 SMART SM00382 34 221 3.4E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS19750 8f76aa3ca539999f303f1fe058556507 225 SUPERFAMILY SSF52540 4 224 1.86E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS19750 8f76aa3ca539999f303f1fe058556507 225 PANTHER PTHR24220 6 225 2.3E-100 T 23-04-2016 RPE_RS19750 8f76aa3ca539999f303f1fe058556507 225 Gene3D G3DSA:3.40.50.300 4 224 1.4E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS22900 081b238ed7e45a85995290a9b7279256 366 SUPERFAMILY SSF50182 187 252 9.81E-15 T 23-04-2016 IPR010920 LSM domain RPE_RS22900 081b238ed7e45a85995290a9b7279256 366 PANTHER PTHR30566:SF10 129 366 7.9E-76 T 23-04-2016 RPE_RS22900 081b238ed7e45a85995290a9b7279256 366 Gene3D G3DSA:3.30.70.100 262 331 5.4E-4 T 23-04-2016 RPE_RS22900 081b238ed7e45a85995290a9b7279256 366 Pfam PF00924 Mechanosensitive ion channel 149 337 1.9E-31 T 23-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 RPE_RS22900 081b238ed7e45a85995290a9b7279256 366 Gene3D G3DSA:2.30.30.60 202 251 7.7E-9 T 23-04-2016 RPE_RS22900 081b238ed7e45a85995290a9b7279256 366 PANTHER PTHR30566 129 366 7.9E-76 T 23-04-2016 RPE_RS13910 050e33f73f52f3ce49e813d90bde9b4a 358 Gene3D G3DSA:2.40.10.240 64 148 9.9E-18 T 23-04-2016 RPE_RS13910 050e33f73f52f3ce49e813d90bde9b4a 358 PANTHER PTHR30307:SF0 2 358 1.9E-152 T 23-04-2016 RPE_RS13910 050e33f73f52f3ce49e813d90bde9b4a 358 Gene3D G3DSA:3.40.1780.10 1 61 2.1E-93 T 23-04-2016 RPE_RS13910 050e33f73f52f3ce49e813d90bde9b4a 358 Gene3D G3DSA:3.40.1780.10 191 353 2.1E-93 T 23-04-2016 RPE_RS13910 050e33f73f52f3ce49e813d90bde9b4a 358 PANTHER PTHR30307 2 358 1.9E-152 T 23-04-2016 RPE_RS13910 050e33f73f52f3ce49e813d90bde9b4a 358 Pfam PF02547 Queuosine biosynthesis protein 4 353 4.1E-122 T 23-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 RPE_RS13910 050e33f73f52f3ce49e813d90bde9b4a 358 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1 353 1.0E-104 T 23-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 RPE_RS13910 050e33f73f52f3ce49e813d90bde9b4a 358 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 354 42.041 T 23-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 RPE_RS13910 050e33f73f52f3ce49e813d90bde9b4a 358 SUPERFAMILY SSF111337 1 353 1.31E-124 T 23-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 RPE_RS08310 23f2a3f32a0a902778e7f1b0bbf86a77 279 Gene3D G3DSA:3.40.50.300 5 264 8.7E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS08310 23f2a3f32a0a902778e7f1b0bbf86a77 279 PANTHER PTHR24220:SF358 9 122 2.0E-112 T 23-04-2016 RPE_RS08310 23f2a3f32a0a902778e7f1b0bbf86a77 279 PANTHER PTHR24220:SF358 139 270 2.0E-112 T 23-04-2016 RPE_RS08310 23f2a3f32a0a902778e7f1b0bbf86a77 279 SMART SM00382 32 242 1.3E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS08310 23f2a3f32a0a902778e7f1b0bbf86a77 279 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 243 264 8.0E-9 T 23-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RPE_RS08310 23f2a3f32a0a902778e7f1b0bbf86a77 279 SUPERFAMILY SSF52540 6 264 1.24E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS08310 23f2a3f32a0a902778e7f1b0bbf86a77 279 PANTHER PTHR24220 9 122 2.0E-112 T 23-04-2016 RPE_RS08310 23f2a3f32a0a902778e7f1b0bbf86a77 279 PANTHER PTHR24220 139 270 2.0E-112 T 23-04-2016 RPE_RS08310 23f2a3f32a0a902778e7f1b0bbf86a77 279 Pfam PF00005 ABC transporter 25 192 4.1E-26 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS05400 7698a70c0d2af2bde5783e34650d9f51 309 Gene3D G3DSA:3.40.800.20 3 308 2.6E-105 T 23-04-2016 IPR023801 Histone deacetylase domain RPE_RS05400 7698a70c0d2af2bde5783e34650d9f51 309 PANTHER PTHR10625:SF104 11 308 3.3E-108 T 23-04-2016 RPE_RS05400 7698a70c0d2af2bde5783e34650d9f51 309 PANTHER PTHR10625 11 308 3.3E-108 T 23-04-2016 IPR000286 Histone deacetylase superfamily RPE_RS05400 7698a70c0d2af2bde5783e34650d9f51 309 SUPERFAMILY SSF52768 2 308 2.64E-103 T 23-04-2016 RPE_RS05400 7698a70c0d2af2bde5783e34650d9f51 309 Pfam PF00850 Histone deacetylase domain 20 306 3.8E-84 T 23-04-2016 IPR023801 Histone deacetylase domain RPE_RS05400 7698a70c0d2af2bde5783e34650d9f51 309 PRINTS PR01270 Histone deacetylase superfamily signature 155 170 5.5E-15 T 23-04-2016 IPR000286 Histone deacetylase superfamily RPE_RS05400 7698a70c0d2af2bde5783e34650d9f51 309 PRINTS PR01270 Histone deacetylase superfamily signature 121 144 5.5E-15 T 23-04-2016 IPR000286 Histone deacetylase superfamily RPE_RS05400 7698a70c0d2af2bde5783e34650d9f51 309 PRINTS PR01270 Histone deacetylase superfamily signature 236 246 5.5E-15 T 23-04-2016 IPR000286 Histone deacetylase superfamily RPE_RS15085 3bc973c6d17f8a057b99809173ba511a 442 SUPERFAMILY SSF56925 296 442 3.92E-5 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RPE_RS15085 3bc973c6d17f8a057b99809173ba511a 442 SUPERFAMILY SSF48452 39 114 5.36E-10 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS15085 3bc973c6d17f8a057b99809173ba511a 442 Gene3D G3DSA:1.25.40.10 47 116 2.9E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS15085 3bc973c6d17f8a057b99809173ba511a 442 Pfam PF13432 Tetratricopeptide repeat 57 118 1.2E-6 T 23-04-2016 RPE_RS24180 b946a7f96c5791ac888ed8594451837c 421 Gene3D G3DSA:3.20.20.10 36 271 1.7E-82 T 23-04-2016 IPR029066 PLP-binding barrel RPE_RS24180 b946a7f96c5791ac888ed8594451837c 421 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 39 282 8.9E-59 T 23-04-2016 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Reactome: REACT_13 RPE_RS24180 b946a7f96c5791ac888ed8594451837c 421 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 287 392 1.3E-15 T 23-04-2016 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Reactome: REACT_13 RPE_RS24180 b946a7f96c5791ac888ed8594451837c 421 Gene3D G3DSA:2.40.37.10 272 418 1.0E-46 T 23-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 RPE_RS24180 b946a7f96c5791ac888ed8594451837c 421 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 57 75 - T 23-04-2016 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Reactome: REACT_13 RPE_RS24180 b946a7f96c5791ac888ed8594451837c 421 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 373 386 1.3E-22 T 23-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 RPE_RS24180 b946a7f96c5791ac888ed8594451837c 421 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 190 203 1.3E-22 T 23-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 RPE_RS24180 b946a7f96c5791ac888ed8594451837c 421 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 57 75 1.3E-22 T 23-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 RPE_RS24180 b946a7f96c5791ac888ed8594451837c 421 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 272 291 1.3E-22 T 23-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 RPE_RS24180 b946a7f96c5791ac888ed8594451837c 421 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 77 89 1.3E-22 T 23-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 RPE_RS24180 b946a7f96c5791ac888ed8594451837c 421 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 15 416 40.43 T 23-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RPE_RS24180 b946a7f96c5791ac888ed8594451837c 421 PANTHER PTHR11482 1 421 1.4E-165 T 23-04-2016 RPE_RS24180 b946a7f96c5791ac888ed8594451837c 421 PRINTS PR01181 Diaminopimelate decarboxylase signature 383 405 3.5E-27 T 23-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RPE_RS24180 b946a7f96c5791ac888ed8594451837c 421 PRINTS PR01181 Diaminopimelate decarboxylase signature 164 173 3.5E-27 T 23-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RPE_RS24180 b946a7f96c5791ac888ed8594451837c 421 PRINTS PR01181 Diaminopimelate decarboxylase signature 300 318 3.5E-27 T 23-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RPE_RS24180 b946a7f96c5791ac888ed8594451837c 421 PRINTS PR01181 Diaminopimelate decarboxylase signature 75 92 3.5E-27 T 23-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RPE_RS24180 b946a7f96c5791ac888ed8594451837c 421 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 7 415 1.3E-142 T 23-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RPE_RS24180 b946a7f96c5791ac888ed8594451837c 421 SUPERFAMILY SSF50621 255 416 7.74E-53 T 23-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 RPE_RS24180 b946a7f96c5791ac888ed8594451837c 421 SUPERFAMILY SSF51419 26 284 4.8E-81 T 23-04-2016 IPR029066 PLP-binding barrel RPE_RS24180 b946a7f96c5791ac888ed8594451837c 421 PANTHER PTHR11482:SF5 1 421 1.4E-165 T 23-04-2016 RPE_RS05790 bca9c7059f43e49cbf74d50a71f93477 79 SUPERFAMILY SSF48295 14 55 1.73E-7 T 23-04-2016 IPR010921 Trp repressor/replication initiator GO:0043565 RPE_RS05790 bca9c7059f43e49cbf74d50a71f93477 79 PANTHER PTHR33215 16 65 7.8E-25 T 23-04-2016 RPE_RS05790 bca9c7059f43e49cbf74d50a71f93477 79 PANTHER PTHR33215:SF2 16 65 7.8E-25 T 23-04-2016 RPE_RS19755 46c9af4652cbe1da14a179d922a33ca4 408 Pfam PF02687 FtsX-like permease family 285 402 9.1E-17 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 RPE_RS19755 46c9af4652cbe1da14a179d922a33ca4 408 Pfam PF12704 MacB-like periplasmic core domain 23 253 4.7E-13 T 23-04-2016 IPR025857 MacB-like periplasmic core domain RPE_RS19755 46c9af4652cbe1da14a179d922a33ca4 408 PANTHER PTHR30489 1 68 1.0E-49 T 23-04-2016 RPE_RS19755 46c9af4652cbe1da14a179d922a33ca4 408 PANTHER PTHR30489 92 408 1.0E-49 T 23-04-2016 RPE_RS19560 6caea220594eb5afb31bfcaecb94269d 330 Pfam PF09084 NMT1/THI5 like 43 252 8.3E-33 T 23-04-2016 IPR015168 SsuA/THI5-like RPE_RS19560 6caea220594eb5afb31bfcaecb94269d 330 PANTHER PTHR31528 1 321 2.9E-42 T 23-04-2016 IPR027939 NMT1/THI5 family GO:0009228 UniPathway: UPA00060 RPE_RS19560 6caea220594eb5afb31bfcaecb94269d 330 Gene3D G3DSA:3.40.190.10 115 238 1.3E-6 T 23-04-2016 RPE_RS19560 6caea220594eb5afb31bfcaecb94269d 330 SUPERFAMILY SSF53850 37 311 7.09E-38 T 23-04-2016 RPE_RS19560 6caea220594eb5afb31bfcaecb94269d 330 PANTHER PTHR31528:SF1 1 321 2.9E-42 T 23-04-2016 RPE_RS24625 c7a198bf507b36fc30dda2943c4417a9 291 PANTHER PTHR18895 77 278 8.7E-32 T 23-04-2016 RPE_RS24625 c7a198bf507b36fc30dda2943c4417a9 291 SUPERFAMILY SSF53335 60 260 3.55E-34 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS24625 c7a198bf507b36fc30dda2943c4417a9 291 Gene3D G3DSA:3.40.50.150 83 263 6.1E-38 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS24625 c7a198bf507b36fc30dda2943c4417a9 291 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 61 187 4.1E-20 T 23-04-2016 RPE_RS11855 5e4b6ec716cee487a8bb7cffb2832414 235 Gene3D G3DSA:2.40.160.20 10 230 3.4E-38 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RPE_RS11855 5e4b6ec716cee487a8bb7cffb2832414 235 PANTHER PTHR34001 1 235 3.7E-67 T 23-04-2016 RPE_RS11855 5e4b6ec716cee487a8bb7cffb2832414 235 Pfam PF13505 Outer membrane protein beta-barrel domain 7 225 6.2E-21 T 23-04-2016 IPR027385 Outer membrane protein beta-barrel RPE_RS11855 5e4b6ec716cee487a8bb7cffb2832414 235 SUPERFAMILY SSF56925 40 229 1.8E-32 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RPE_RS12655 1e55b1e862524274cf29d7f2ceb2e4e5 201 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 32 152 5.1E-43 T 23-04-2016 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 RPE_RS12655 1e55b1e862524274cf29d7f2ceb2e4e5 201 PANTHER PTHR10884:SF6 6 198 1.2E-98 T 23-04-2016 RPE_RS12655 1e55b1e862524274cf29d7f2ceb2e4e5 201 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 34 153 4.4E-43 T 23-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 RPE_RS12655 1e55b1e862524274cf29d7f2ceb2e4e5 201 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 13 161 31.126 T 23-04-2016 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 RPE_RS12655 1e55b1e862524274cf29d7f2ceb2e4e5 201 ProSitePatterns PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 114 135 - T 23-04-2016 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0016651|GO:0055114 RPE_RS12655 1e55b1e862524274cf29d7f2ceb2e4e5 201 PANTHER PTHR10884 6 198 1.2E-98 T 23-04-2016 RPE_RS12655 1e55b1e862524274cf29d7f2ceb2e4e5 201 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 85 140 1.0E-26 T 23-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 RPE_RS12655 1e55b1e862524274cf29d7f2ceb2e4e5 201 SUPERFAMILY SSF143243 10 186 1.14E-58 T 23-04-2016 RPE_RS18725 e8c37ef928ce40766c3553792ca48ab3 490 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 168 176 - T 23-04-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site RPE_RS18725 e8c37ef928ce40766c3553792ca48ab3 490 PANTHER PTHR24031:SF261 15 384 6.0E-181 T 23-04-2016 RPE_RS18725 e8c37ef928ce40766c3553792ca48ab3 490 Pfam PF00270 DEAD/DEAH box helicase 40 210 1.5E-49 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RPE_RS18725 e8c37ef928ce40766c3553792ca48ab3 490 Gene3D G3DSA:3.40.50.300 14 226 5.7E-79 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18725 e8c37ef928ce40766c3553792ca48ab3 490 PANTHER PTHR24031 15 384 6.0E-181 T 23-04-2016 RPE_RS18725 e8c37ef928ce40766c3553792ca48ab3 490 SMART SM00490 273 354 8.4E-31 T 23-04-2016 IPR001650 Helicase, C-terminal RPE_RS18725 e8c37ef928ce40766c3553792ca48ab3 490 SUPERFAMILY SSF52540 90 375 2.56E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18725 e8c37ef928ce40766c3553792ca48ab3 490 Gene3D G3DSA:3.40.50.300 227 386 8.7E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18725 e8c37ef928ce40766c3553792ca48ab3 490 Pfam PF00271 Helicase conserved C-terminal domain 246 354 8.1E-27 T 23-04-2016 IPR001650 Helicase, C-terminal RPE_RS18725 e8c37ef928ce40766c3553792ca48ab3 490 SMART SM00487 35 237 5.2E-57 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RPE_RS17535 c5e7cf9250ec7464247c717d05043328 442 Pfam PF04932 O-Antigen ligase 196 357 8.4E-11 T 23-04-2016 IPR007016 O-antigen ligase-related RPE_RS19295 978f08b01a3ed7df78ecc3182f683af9 335 Gene3D G3DSA:3.40.190.10 121 254 4.9E-15 T 23-04-2016 RPE_RS19295 978f08b01a3ed7df78ecc3182f683af9 335 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 72 242 1.4E-8 T 23-04-2016 RPE_RS19295 978f08b01a3ed7df78ecc3182f683af9 335 PIRSF PIRSF027386 18 335 8.8E-92 T 23-04-2016 IPR027024 ABC-type uncharacterised transport system, substrate-binding component, TM0202 type RPE_RS19295 978f08b01a3ed7df78ecc3182f683af9 335 SUPERFAMILY SSF53850 66 322 2.11E-31 T 23-04-2016 RPE_RS19295 978f08b01a3ed7df78ecc3182f683af9 335 PANTHER PTHR30024:SF1 2 318 1.6E-26 T 23-04-2016 RPE_RS19295 978f08b01a3ed7df78ecc3182f683af9 335 PANTHER PTHR30024 2 318 1.6E-26 T 23-04-2016 RPE_RS22640 54ae05f031a05aa46f6638089aebcef1 299 PRINTS PR00091 Nitrogenase component II signature 125 140 6.5E-37 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RPE_RS22640 54ae05f031a05aa46f6638089aebcef1 299 PRINTS PR00091 Nitrogenase component II signature 10 23 6.5E-37 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RPE_RS22640 54ae05f031a05aa46f6638089aebcef1 299 PRINTS PR00091 Nitrogenase component II signature 32 47 6.5E-37 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RPE_RS22640 54ae05f031a05aa46f6638089aebcef1 299 PRINTS PR00091 Nitrogenase component II signature 87 101 6.5E-37 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RPE_RS22640 54ae05f031a05aa46f6638089aebcef1 299 PIRSF PIRSF000363 3 279 1.1E-119 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RPE_RS22640 54ae05f031a05aa46f6638089aebcef1 299 ProSitePatterns PS00746 NifH/frxC family signature 1. 89 101 - T 23-04-2016 IPR030655 NifH/chlL conserved site RPE_RS22640 54ae05f031a05aa46f6638089aebcef1 299 TIGRFAM TIGR01287 nifH: nitrogenase iron protein 5 279 3.7E-136 T 23-04-2016 IPR005977 Nitrogenase iron protein NifH GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 RPE_RS22640 54ae05f031a05aa46f6638089aebcef1 299 ProSitePatterns PS00692 NifH/frxC family signature 2. 126 139 - T 23-04-2016 IPR030655 NifH/chlL conserved site RPE_RS22640 54ae05f031a05aa46f6638089aebcef1 299 Pfam PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 5 276 1.6E-133 T 23-04-2016 RPE_RS22640 54ae05f031a05aa46f6638089aebcef1 299 PANTHER PTHR13696 1 261 2.3E-142 T 23-04-2016 RPE_RS22640 54ae05f031a05aa46f6638089aebcef1 299 Hamap MF_00533 Nitrogenase iron protein [nifH]. 4 277 52.408 T 23-04-2016 IPR005977 Nitrogenase iron protein NifH GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 RPE_RS22640 54ae05f031a05aa46f6638089aebcef1 299 SUPERFAMILY SSF52540 5 281 1.13E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS22640 54ae05f031a05aa46f6638089aebcef1 299 PANTHER PTHR13696:SF5 1 261 2.3E-142 T 23-04-2016 RPE_RS22640 54ae05f031a05aa46f6638089aebcef1 299 Gene3D G3DSA:3.40.50.300 6 273 2.1E-75 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10545 0979fc87833beb272a4d1fcc0d823997 584 Pfam PF00905 Penicillin binding protein transpeptidase domain 254 531 3.4E-55 T 23-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RPE_RS10545 0979fc87833beb272a4d1fcc0d823997 584 Gene3D G3DSA:3.40.710.10 227 557 2.5E-71 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS10545 0979fc87833beb272a4d1fcc0d823997 584 PANTHER PTHR30627 27 576 6.7E-145 T 23-04-2016 RPE_RS10545 0979fc87833beb272a4d1fcc0d823997 584 SUPERFAMILY SSF56601 227 563 1.15E-73 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS10545 0979fc87833beb272a4d1fcc0d823997 584 SUPERFAMILY SSF56519 79 202 1.7E-30 T 23-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 RPE_RS10545 0979fc87833beb272a4d1fcc0d823997 584 Gene3D G3DSA:3.90.1310.10 148 203 7.2E-12 T 23-04-2016 RPE_RS10545 0979fc87833beb272a4d1fcc0d823997 584 Pfam PF03717 Penicillin-binding Protein dimerisation domain 81 188 1.8E-9 T 23-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 RPE_RS10545 0979fc87833beb272a4d1fcc0d823997 584 PANTHER PTHR30627:SF1 27 576 6.7E-145 T 23-04-2016 RPE_RS20635 8ae1c216ce2efc7379fcbb1284cb00f6 326 Gene3D G3DSA:3.90.1200.10 106 314 4.6E-67 T 23-04-2016 RPE_RS20635 8ae1c216ce2efc7379fcbb1284cb00f6 326 Pfam PF01636 Phosphotransferase enzyme family 28 256 9.2E-34 T 23-04-2016 IPR002575 Aminoglycoside phosphotransferase RPE_RS20635 8ae1c216ce2efc7379fcbb1284cb00f6 326 TIGRFAM TIGR00938 thrB_alt: homoserine kinase 1 307 2.7E-122 T 23-04-2016 IPR005280 Homoserine kinase ThrB GO:0004413|GO:0009088 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702|UniPathway: UPA00050 RPE_RS20635 8ae1c216ce2efc7379fcbb1284cb00f6 326 SUPERFAMILY SSF56112 5 310 1.63E-81 T 23-04-2016 IPR011009 Protein kinase-like domain RPE_RS20635 8ae1c216ce2efc7379fcbb1284cb00f6 326 PANTHER PTHR21064 18 288 4.4E-50 T 23-04-2016 RPE_RS20635 8ae1c216ce2efc7379fcbb1284cb00f6 326 Hamap MF_00301 Homoserine kinase [thrB]. 1 326 174.343 T 23-04-2016 IPR005280 Homoserine kinase ThrB GO:0004413|GO:0009088 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702|UniPathway: UPA00050 RPE_RS20635 8ae1c216ce2efc7379fcbb1284cb00f6 326 Gene3D G3DSA:3.30.200.20 2 104 4.7E-38 T 23-04-2016 RPE_RS06610 e5210b79f1f53627847de43527c0f182 567 PANTHER PTHR32089:SF40 285 564 3.5E-200 T 23-04-2016 RPE_RS06610 e5210b79f1f53627847de43527c0f182 567 PANTHER PTHR32089:SF40 97 252 3.5E-200 T 23-04-2016 RPE_RS06610 e5210b79f1f53627847de43527c0f182 567 Pfam PF00672 HAMP domain 198 266 1.0E-13 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS06610 e5210b79f1f53627847de43527c0f182 567 Gene3D G3DSA:3.30.450.20 31 187 5.0E-52 T 23-04-2016 RPE_RS06610 e5210b79f1f53627847de43527c0f182 567 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 382 560 7.1E-39 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS06610 e5210b79f1f53627847de43527c0f182 567 Pfam PF17200 Single Cache domain 2 43 192 8.4E-49 T 23-04-2016 IPR033480 Single Cache domain 2 RPE_RS06610 e5210b79f1f53627847de43527c0f182 567 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 405 432 4.3E-21 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS06610 e5210b79f1f53627847de43527c0f182 567 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 482 511 4.3E-21 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS06610 e5210b79f1f53627847de43527c0f182 567 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 327 356 4.3E-21 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS06610 e5210b79f1f53627847de43527c0f182 567 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 434 463 4.3E-21 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS06610 e5210b79f1f53627847de43527c0f182 567 SUPERFAMILY SSF158472 218 265 6.67E-10 T 23-04-2016 RPE_RS06610 e5210b79f1f53627847de43527c0f182 567 SMART SM01049 40 134 3.2E-37 T 23-04-2016 IPR033480 Single Cache domain 2 RPE_RS06610 e5210b79f1f53627847de43527c0f182 567 PANTHER PTHR32089 285 564 3.5E-200 T 23-04-2016 RPE_RS06610 e5210b79f1f53627847de43527c0f182 567 PANTHER PTHR32089 97 252 3.5E-200 T 23-04-2016 RPE_RS06610 e5210b79f1f53627847de43527c0f182 567 SMART SM00304 217 270 1.4E-10 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS06610 e5210b79f1f53627847de43527c0f182 567 SMART SM00283 307 561 1.2E-51 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS06610 e5210b79f1f53627847de43527c0f182 567 SUPERFAMILY SSF58104 313 560 1.96E-64 T 23-04-2016 RPE_RS06610 e5210b79f1f53627847de43527c0f182 567 Gene3D G3DSA:1.10.287.950 326 531 4.1E-50 T 23-04-2016 RPE_RS06070 c1397e246f65d1ddb49801d61c7b91e9 353 PANTHER PTHR24421:SF21 3 340 7.0E-143 T 23-04-2016 RPE_RS06070 c1397e246f65d1ddb49801d61c7b91e9 353 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 4 344 40.859 T 23-04-2016 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RPE_RS06070 c1397e246f65d1ddb49801d61c7b91e9 353 Pfam PF00072 Response regulator receiver domain 6 109 1.7E-24 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS06070 c1397e246f65d1ddb49801d61c7b91e9 353 PIRSF PIRSF000876 1 347 4.3E-136 T 23-04-2016 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RPE_RS06070 c1397e246f65d1ddb49801d61c7b91e9 353 SUPERFAMILY SSF52738 155 343 1.44E-71 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RPE_RS06070 c1397e246f65d1ddb49801d61c7b91e9 353 Pfam PF01339 CheB methylesterase 161 338 4.8E-59 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RPE_RS06070 c1397e246f65d1ddb49801d61c7b91e9 353 PANTHER PTHR24421 3 340 7.0E-143 T 23-04-2016 RPE_RS06070 c1397e246f65d1ddb49801d61c7b91e9 353 Gene3D G3DSA:3.40.50.2300 2 109 9.5E-30 T 23-04-2016 RPE_RS06070 c1397e246f65d1ddb49801d61c7b91e9 353 Gene3D G3DSA:3.40.50.180 155 344 2.0E-79 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RPE_RS06070 c1397e246f65d1ddb49801d61c7b91e9 353 SMART SM00448 4 123 1.8E-23 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS06070 c1397e246f65d1ddb49801d61c7b91e9 353 SUPERFAMILY SSF52172 1 109 5.69E-29 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS02270 e90c5ab66050affb954fcfd68e7b788c 133 Pfam PF06305 Protein of unknown function (DUF1049) 44 87 1.2E-5 T 23-04-2016 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 RPE_RS02270 e90c5ab66050affb954fcfd68e7b788c 133 Gene3D G3DSA:1.20.5.110 49 72 1.4E-4 T 23-04-2016 RPE_RS06230 7e7f878c7522dc603c14111af137930e 371 PANTHER PTHR30013 2 368 3.2E-290 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RPE_RS06230 7e7f878c7522dc603c14111af137930e 371 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 285 298 4.5E-123 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RPE_RS06230 7e7f878c7522dc603c14111af137930e 371 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 233 251 4.5E-123 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RPE_RS06230 7e7f878c7522dc603c14111af137930e 371 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 160 184 4.5E-123 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RPE_RS06230 7e7f878c7522dc603c14111af137930e 371 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 257 283 4.5E-123 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RPE_RS06230 7e7f878c7522dc603c14111af137930e 371 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 189 212 4.5E-123 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RPE_RS06230 7e7f878c7522dc603c14111af137930e 371 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 71 95 4.5E-123 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RPE_RS06230 7e7f878c7522dc603c14111af137930e 371 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 48 70 4.5E-123 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RPE_RS06230 7e7f878c7522dc603c14111af137930e 371 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 117 140 4.5E-123 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RPE_RS06230 7e7f878c7522dc603c14111af137930e 371 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 215 232 4.5E-123 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RPE_RS06230 7e7f878c7522dc603c14111af137930e 371 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 228 307 6.7E-32 T 23-04-2016 IPR027394 Cytochrome-c3 hydrogenase, C-terminal RPE_RS06230 7e7f878c7522dc603c14111af137930e 371 PANTHER PTHR30013:SF6 2 368 3.2E-290 T 23-04-2016 RPE_RS06230 7e7f878c7522dc603c14111af137930e 371 Gene3D G3DSA:4.10.480.10 228 310 2.5E-39 T 23-04-2016 IPR027394 Cytochrome-c3 hydrogenase, C-terminal RPE_RS06230 7e7f878c7522dc603c14111af137930e 371 Gene3D G3DSA:3.40.50.700 51 227 7.4E-59 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 RPE_RS06230 7e7f878c7522dc603c14111af137930e 371 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 17 41 1.8E-4 T 23-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RPE_RS06230 7e7f878c7522dc603c14111af137930e 371 SUPERFAMILY SSF56770 48 311 3.66E-89 T 23-04-2016 RPE_RS06230 7e7f878c7522dc603c14111af137930e 371 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 63 208 1.7E-28 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 RPE_RS06230 7e7f878c7522dc603c14111af137930e 371 PIRSF PIRSF000310 6 358 6.2E-144 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RPE_RS06230 7e7f878c7522dc603c14111af137930e 371 TIGRFAM TIGR00391 hydA: hydrogenase (NiFe) small subunit (hydA) 5 356 3.4E-167 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RPE_RS15395 e71a9f226832445ecc3c4e905c093a41 96 SUPERFAMILY SSF64307 20 77 5.49E-10 T 23-04-2016 IPR001455 TusA-like domain RPE_RS15395 e71a9f226832445ecc3c4e905c093a41 96 Gene3D G3DSA:3.30.110.40 21 53 8.1E-6 T 23-04-2016 IPR001455 TusA-like domain RPE_RS15395 e71a9f226832445ecc3c4e905c093a41 96 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 22 46 - T 23-04-2016 IPR001455 TusA-like domain RPE_RS15395 e71a9f226832445ecc3c4e905c093a41 96 Pfam PF10006 Uncharacterized conserved protein (DUF2249) 21 72 9.0E-12 T 23-04-2016 IPR018720 Domain of unknown function DUF2249 RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 SMART SM00086 207 247 150.0 T 23-04-2016 IPR001610 PAC motif RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 SMART SM00086 331 373 1.5E-6 T 23-04-2016 IPR001610 PAC motif RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 Gene3D G3DSA:1.10.287.130 408 475 5.6E-5 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 SUPERFAMILY SSF55785 244 371 5.96E-30 T 23-04-2016 IPR000014 PAS domain RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 PANTHER PTHR24423 409 778 3.8E-181 T 23-04-2016 RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 PANTHER PTHR24423 121 388 3.8E-181 T 23-04-2016 RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 SUPERFAMILY SSF55785 11 111 1.09E-12 T 23-04-2016 IPR000014 PAS domain RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 SUPERFAMILY SSF55874 470 639 4.32E-35 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 521 639 8.5E-16 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 SMART SM00388 413 479 1.4E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 PANTHER PTHR24423:SF438 409 778 3.8E-181 T 23-04-2016 RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 PANTHER PTHR24423:SF438 121 388 3.8E-181 T 23-04-2016 RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 Pfam PF00512 His Kinase A (phospho-acceptor) domain 415 477 2.1E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 PRINTS PR00344 Bacterial sensor protein C-terminal signature 570 584 5.7E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 PRINTS PR00344 Bacterial sensor protein C-terminal signature 601 619 5.7E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 PRINTS PR00344 Bacterial sensor protein C-terminal signature 588 598 5.7E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 PRINTS PR00344 Bacterial sensor protein C-terminal signature 625 638 5.7E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 SUPERFAMILY SSF47384 407 477 6.47E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 SUPERFAMILY SSF52172 663 778 1.01E-25 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 Pfam PF00989 PAS fold 13 78 1.4E-6 T 23-04-2016 IPR013767 PAS fold GO:0006355 RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 Gene3D G3DSA:3.30.450.20 250 371 1.4E-33 T 23-04-2016 RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 Pfam PF08447 PAS fold 283 367 1.2E-16 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 Gene3D G3DSA:3.30.450.20 12 124 2.9E-12 T 23-04-2016 RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 Pfam PF13426 PAS domain 149 246 7.5E-10 T 23-04-2016 IPR000014 PAS domain RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 SMART SM00091 8 74 0.0059 T 23-04-2016 IPR000014 PAS domain RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 SMART SM00091 259 325 0.035 T 23-04-2016 IPR000014 PAS domain RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 SMART SM00091 139 206 4.0E-8 T 23-04-2016 IPR000014 PAS domain RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 SMART SM00387 520 641 4.0E-24 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 SMART SM00448 664 772 5.2E-16 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 255 380 2.5E-15 T 23-04-2016 IPR000014 PAS domain RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 15 131 1.7E-6 T 23-04-2016 IPR000014 PAS domain RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 136 253 1.9E-18 T 23-04-2016 IPR000014 PAS domain RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 Pfam PF00072 Response regulator receiver domain 666 748 2.9E-16 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 Gene3D G3DSA:3.40.50.2300 662 779 6.6E-28 T 23-04-2016 RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 Gene3D G3DSA:3.30.450.20 135 245 1.8E-18 T 23-04-2016 RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 SUPERFAMILY SSF55785 150 255 7.85E-17 T 23-04-2016 IPR000014 PAS domain RPE_RS18165 a299ef750785983c6fae1067c2ad80cc 781 Gene3D G3DSA:3.30.565.10 478 640 1.2E-36 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS02965 e92421040e77573fb931ad9567c4b61a 286 PANTHER PTHR11795:SF404 1 285 1.5E-98 T 23-04-2016 RPE_RS02965 e92421040e77573fb931ad9567c4b61a 286 PANTHER PTHR11795 1 285 1.5E-98 T 23-04-2016 RPE_RS02965 e92421040e77573fb931ad9567c4b61a 286 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 275 6.3E-44 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RPE_RS19450 9b96aa928c19dbb6c676fd45838d7361 330 SUPERFAMILY SSF53850 46 325 1.32E-23 T 23-04-2016 RPE_RS19450 9b96aa928c19dbb6c676fd45838d7361 330 Pfam PF13379 NMT1-like family 118 271 2.6E-7 T 23-04-2016 RPE_RS19450 9b96aa928c19dbb6c676fd45838d7361 330 PIRSF PIRSF027386 17 329 1.5E-77 T 23-04-2016 IPR027024 ABC-type uncharacterised transport system, substrate-binding component, TM0202 type RPE_RS19450 9b96aa928c19dbb6c676fd45838d7361 330 Gene3D G3DSA:3.40.190.10 117 204 1.7E-10 T 23-04-2016 RPE_RS08615 64e2e486b79c15a0e2c6c845153806fd 581 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 90 141 6.0E-24 T 23-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 RPE_RS08615 64e2e486b79c15a0e2c6c845153806fd 581 PANTHER PTHR11993:SF28 129 576 9.4E-241 T 23-04-2016 RPE_RS08615 64e2e486b79c15a0e2c6c845153806fd 581 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 189 581 42.785 T 23-04-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 RPE_RS08615 64e2e486b79c15a0e2c6c845153806fd 581 SUPERFAMILY SSF56762 208 581 2.75E-125 T 23-04-2016 IPR029014 NiFe hydrogenase-like RPE_RS08615 64e2e486b79c15a0e2c6c845153806fd 581 Gene3D G3DSA:1.10.645.10 197 422 2.9E-35 T 23-04-2016 IPR029014 NiFe hydrogenase-like RPE_RS08615 64e2e486b79c15a0e2c6c845153806fd 581 Gene3D G3DSA:1.10.645.10 424 570 5.4E-16 T 23-04-2016 IPR029014 NiFe hydrogenase-like RPE_RS08615 64e2e486b79c15a0e2c6c845153806fd 581 PANTHER PTHR11993 129 576 9.4E-241 T 23-04-2016 RPE_RS08615 64e2e486b79c15a0e2c6c845153806fd 581 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 32 159 1.6E-31 T 23-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 RPE_RS08615 64e2e486b79c15a0e2c6c845153806fd 581 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 197 581 8.3E-159 T 23-04-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 RPE_RS08615 64e2e486b79c15a0e2c6c845153806fd 581 SUPERFAMILY SSF143243 5 211 4.18E-45 T 23-04-2016 RPE_RS08615 64e2e486b79c15a0e2c6c845153806fd 581 Hamap MF_01359 NADH-quinone oxidoreductase subunit C/D [nuoC]. 1 581 66.499 T 23-04-2016 IPR023062 NADH dehydrogenase, subunit CD GO:0030964|GO:0050136|GO:0055114 KEGG: 00190+1.6.5.11 RPE_RS08615 64e2e486b79c15a0e2c6c845153806fd 581 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 234 245 - T 23-04-2016 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 RPE_RS08615 64e2e486b79c15a0e2c6c845153806fd 581 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 311 581 7.5E-108 T 23-04-2016 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 RPE_RS20975 6578745d0abfee40af03c4dbd168db59 417 ProSitePatterns PS00099 Thiolases active site. 398 411 - T 23-04-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 RPE_RS20975 6578745d0abfee40af03c4dbd168db59 417 PANTHER PTHR18919:SF12 265 417 7.3E-202 T 23-04-2016 RPE_RS20975 6578745d0abfee40af03c4dbd168db59 417 PANTHER PTHR18919:SF12 1 238 7.3E-202 T 23-04-2016 RPE_RS20975 6578745d0abfee40af03c4dbd168db59 417 PANTHER PTHR18919 265 417 7.3E-202 T 23-04-2016 RPE_RS20975 6578745d0abfee40af03c4dbd168db59 417 PANTHER PTHR18919 1 238 7.3E-202 T 23-04-2016 RPE_RS20975 6578745d0abfee40af03c4dbd168db59 417 Pfam PF00108 Thiolase, N-terminal domain 5 235 9.3E-48 T 23-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 RPE_RS20975 6578745d0abfee40af03c4dbd168db59 417 SUPERFAMILY SSF53901 3 238 1.85E-60 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS20975 6578745d0abfee40af03c4dbd168db59 417 SUPERFAMILY SSF53901 265 294 1.85E-60 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS20975 6578745d0abfee40af03c4dbd168db59 417 Gene3D G3DSA:3.40.47.10 149 194 3.0E-56 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS20975 6578745d0abfee40af03c4dbd168db59 417 Gene3D G3DSA:3.40.47.10 301 416 3.0E-56 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS20975 6578745d0abfee40af03c4dbd168db59 417 SUPERFAMILY SSF53901 295 416 4.32E-43 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS20975 6578745d0abfee40af03c4dbd168db59 417 Pfam PF02803 Thiolase, C-terminal domain 294 416 1.1E-42 T 23-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 RPE_RS20975 6578745d0abfee40af03c4dbd168db59 417 PIRSF PIRSF000429 1 417 2.9E-106 T 23-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RPE_RS20975 6578745d0abfee40af03c4dbd168db59 417 Gene3D G3DSA:3.40.47.10 195 300 2.2E-60 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS20975 6578745d0abfee40af03c4dbd168db59 417 Gene3D G3DSA:3.40.47.10 4 127 2.2E-60 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS20975 6578745d0abfee40af03c4dbd168db59 417 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 415 8.5E-121 T 23-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RPE_RS20975 6578745d0abfee40af03c4dbd168db59 417 ProSitePatterns PS00737 Thiolases signature 2. 363 379 - T 23-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 RPE_RS06585 9a296b5a64792ecb5e37cafa07901efe 326 SUPERFAMILY SSF53850 4 236 3.69E-52 T 23-04-2016 RPE_RS06585 9a296b5a64792ecb5e37cafa07901efe 326 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 248 264 - T 23-04-2016 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS06585 9a296b5a64792ecb5e37cafa07901efe 326 Gene3D G3DSA:3.30.160.40 238 322 1.0E-18 T 23-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS06585 9a296b5a64792ecb5e37cafa07901efe 326 PIRSF PIRSF001438 1 326 5.7E-83 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS06585 9a296b5a64792ecb5e37cafa07901efe 326 Gene3D G3DSA:3.40.190.10 4 111 6.0E-30 T 23-04-2016 RPE_RS06585 9a296b5a64792ecb5e37cafa07901efe 326 PRINTS PR00151 Porphobilinogen deaminase signature 247 264 7.0E-9 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS06585 9a296b5a64792ecb5e37cafa07901efe 326 PRINTS PR00151 Porphobilinogen deaminase signature 129 146 7.0E-9 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS06585 9a296b5a64792ecb5e37cafa07901efe 326 PRINTS PR00151 Porphobilinogen deaminase signature 76 95 7.0E-9 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS06585 9a296b5a64792ecb5e37cafa07901efe 326 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 244 313 1.3E-9 T 23-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS06585 9a296b5a64792ecb5e37cafa07901efe 326 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 5 230 7.2E-52 T 23-04-2016 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS06585 9a296b5a64792ecb5e37cafa07901efe 326 SUPERFAMILY SSF54782 237 323 1.44E-18 T 23-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS06585 9a296b5a64792ecb5e37cafa07901efe 326 Gene3D G3DSA:3.40.190.10 112 216 1.5E-24 T 23-04-2016 RPE_RS06585 9a296b5a64792ecb5e37cafa07901efe 326 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 5 314 8.2E-72 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS06585 9a296b5a64792ecb5e37cafa07901efe 326 PANTHER PTHR11557 2 324 1.0E-96 T 23-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS06525 82ed3a705f2db8a5a78f7f379bb8737b 59 Gene3D G3DSA:4.10.220.20 1 52 3.7E-31 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS06525 82ed3a705f2db8a5a78f7f379bb8737b 59 SUPERFAMILY SSF56918 1 50 1.2E-21 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS06525 82ed3a705f2db8a5a78f7f379bb8737b 59 PRINTS PR00673 Light harvesting protein A chain signature 31 42 2.6E-12 T 23-04-2016 IPR018332 Antenna complex, alpha subunit RPE_RS06525 82ed3a705f2db8a5a78f7f379bb8737b 59 PRINTS PR00673 Light harvesting protein A chain signature 5 12 2.6E-12 T 23-04-2016 IPR018332 Antenna complex, alpha subunit RPE_RS06525 82ed3a705f2db8a5a78f7f379bb8737b 59 PRINTS PR00673 Light harvesting protein A chain signature 12 31 2.6E-12 T 23-04-2016 IPR018332 Antenna complex, alpha subunit RPE_RS06525 82ed3a705f2db8a5a78f7f379bb8737b 59 ProSitePatterns PS00968 Antenna complexes alpha subunits signature. 25 41 - T 23-04-2016 IPR002361 Antenna complex, alpha subunit conserved site GO:0016021|GO:0019684|GO:0019866|GO:0030077|GO:0045156 RPE_RS06525 82ed3a705f2db8a5a78f7f379bb8737b 59 Pfam PF00556 Antenna complex alpha/beta subunit 6 41 1.1E-14 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS18110 0b7da233473aa9156e41ff90f8b82c90 245 Gene3D G3DSA:3.40.50.1240 65 223 1.4E-32 T 23-04-2016 IPR029033 Histidine phosphatase superfamily RPE_RS18110 0b7da233473aa9156e41ff90f8b82c90 245 SUPERFAMILY SSF53254 20 224 9.03E-36 T 23-04-2016 IPR029033 Histidine phosphatase superfamily RPE_RS18110 0b7da233473aa9156e41ff90f8b82c90 245 SMART SM00855 22 176 8.2E-5 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RPE_RS18110 0b7da233473aa9156e41ff90f8b82c90 245 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 24 204 1.8E-34 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RPE_RS18110 0b7da233473aa9156e41ff90f8b82c90 245 PANTHER PTHR23029:SF28 16 231 5.7E-96 T 23-04-2016 RPE_RS18110 0b7da233473aa9156e41ff90f8b82c90 245 PANTHER PTHR23029 16 231 5.7E-96 T 23-04-2016 RPE_RS00125 12d4bad1af784dec65fbc50aff105dfd 534 Pfam PF02142 MGS-like domain 24 137 1.9E-26 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain RPE_RS00125 12d4bad1af784dec65fbc50aff105dfd 534 Gene3D G3DSA:3.40.140.20 375 524 2.9E-57 T 23-04-2016 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RPE_RS00125 12d4bad1af784dec65fbc50aff105dfd 534 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 12 534 44.236 T 23-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RPE_RS00125 12d4bad1af784dec65fbc50aff105dfd 534 SMART SM00851 24 138 1.1E-55 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain RPE_RS00125 12d4bad1af784dec65fbc50aff105dfd 534 Gene3D G3DSA:3.40.50.1380 11 196 9.6E-84 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain RPE_RS00125 12d4bad1af784dec65fbc50aff105dfd 534 Gene3D G3DSA:3.40.140.20 248 368 3.0E-48 T 23-04-2016 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RPE_RS00125 12d4bad1af784dec65fbc50aff105dfd 534 PIRSF PIRSF000414 6 534 1.2E-211 T 23-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RPE_RS00125 12d4bad1af784dec65fbc50aff105dfd 534 PANTHER PTHR11692:SF2 10 534 0.0 T 23-04-2016 RPE_RS00125 12d4bad1af784dec65fbc50aff105dfd 534 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 14 534 7.3E-207 T 23-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RPE_RS00125 12d4bad1af784dec65fbc50aff105dfd 534 SUPERFAMILY SSF52335 12 202 4.84E-68 T 23-04-2016 IPR011607 Methylglyoxal synthase-like domain RPE_RS00125 12d4bad1af784dec65fbc50aff105dfd 534 SMART SM00798 143 459 4.4E-205 T 23-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RPE_RS00125 12d4bad1af784dec65fbc50aff105dfd 534 Pfam PF01808 AICARFT/IMPCHase bienzyme 143 458 3.3E-117 T 23-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RPE_RS00125 12d4bad1af784dec65fbc50aff105dfd 534 PANTHER PTHR11692 10 534 0.0 T 23-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 RPE_RS00125 12d4bad1af784dec65fbc50aff105dfd 534 SUPERFAMILY SSF53927 219 534 8.82E-128 T 23-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 RPE_RS16795 bb79b06c7a2a8690b2388f96fc515b54 330 PANTHER PTHR30349 8 297 6.3E-60 T 23-04-2016 RPE_RS16795 bb79b06c7a2a8690b2388f96fc515b54 330 Gene3D G3DSA:3.40.190.10 165 246 3.6E-5 T 23-04-2016 RPE_RS16795 bb79b06c7a2a8690b2388f96fc515b54 330 PANTHER PTHR30349:SF1 8 297 6.3E-60 T 23-04-2016 RPE_RS16795 bb79b06c7a2a8690b2388f96fc515b54 330 SUPERFAMILY SSF53850 120 286 2.17E-9 T 23-04-2016 RPE_RS16795 bb79b06c7a2a8690b2388f96fc515b54 330 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 54 326 2.2E-59 T 23-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RPE_RS16795 bb79b06c7a2a8690b2388f96fc515b54 330 PIRSF PIRSF017082 5 330 1.5E-66 T 23-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RPE_RS22275 e156bf10cdacb33bfd70e3c141c45d34 705 PANTHER PTHR33362:SF1 83 407 7.9E-249 T 23-04-2016 RPE_RS22275 e156bf10cdacb33bfd70e3c141c45d34 705 PANTHER PTHR33362:SF1 444 698 7.9E-249 T 23-04-2016 RPE_RS22275 e156bf10cdacb33bfd70e3c141c45d34 705 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 131 406 1.8E-59 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RPE_RS22275 e156bf10cdacb33bfd70e3c141c45d34 705 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 435 614 3.7E-27 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RPE_RS22275 e156bf10cdacb33bfd70e3c141c45d34 705 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 36 695 2.3E-197 T 23-04-2016 IPR011853 TRAP transporter, 4TM/12TM fusion protein RPE_RS22275 e156bf10cdacb33bfd70e3c141c45d34 705 PANTHER PTHR33362 83 407 7.9E-249 T 23-04-2016 RPE_RS22275 e156bf10cdacb33bfd70e3c141c45d34 705 PANTHER PTHR33362 444 698 7.9E-249 T 23-04-2016 RPE_RS24245 7b66e3c6070537ea057f3af014c9666f 402 SMART SM00387 140 256 3.7E-29 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS24245 7b66e3c6070537ea057f3af014c9666f 402 Pfam PF00512 His Kinase A (phospho-acceptor) domain 32 79 7.6E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS24245 7b66e3c6070537ea057f3af014c9666f 402 SMART SM00388 28 93 9.9E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS24245 7b66e3c6070537ea057f3af014c9666f 402 SUPERFAMILY SSF47384 30 84 2.94E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS24245 7b66e3c6070537ea057f3af014c9666f 402 Gene3D G3DSA:3.40.50.2300 276 397 6.5E-26 T 23-04-2016 RPE_RS24245 7b66e3c6070537ea057f3af014c9666f 402 Gene3D G3DSA:3.30.565.10 97 258 1.1E-34 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS24245 7b66e3c6070537ea057f3af014c9666f 402 SUPERFAMILY SSF55874 88 252 2.49E-31 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS24245 7b66e3c6070537ea057f3af014c9666f 402 PANTHER PTHR24423 33 397 7.9E-88 T 23-04-2016 RPE_RS24245 7b66e3c6070537ea057f3af014c9666f 402 PRINTS PR00344 Bacterial sensor protein C-terminal signature 240 253 4.9E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS24245 7b66e3c6070537ea057f3af014c9666f 402 PRINTS PR00344 Bacterial sensor protein C-terminal signature 199 209 4.9E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS24245 7b66e3c6070537ea057f3af014c9666f 402 PRINTS PR00344 Bacterial sensor protein C-terminal signature 216 234 4.9E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS24245 7b66e3c6070537ea057f3af014c9666f 402 PRINTS PR00344 Bacterial sensor protein C-terminal signature 181 195 4.9E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS24245 7b66e3c6070537ea057f3af014c9666f 402 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 140 255 3.4E-22 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS24245 7b66e3c6070537ea057f3af014c9666f 402 Pfam PF00072 Response regulator receiver domain 281 391 1.8E-16 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS24245 7b66e3c6070537ea057f3af014c9666f 402 SMART SM00448 279 391 3.0E-22 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS24245 7b66e3c6070537ea057f3af014c9666f 402 PANTHER PTHR24423:SF442 33 397 7.9E-88 T 23-04-2016 RPE_RS24245 7b66e3c6070537ea057f3af014c9666f 402 Gene3D G3DSA:1.10.287.130 32 87 7.7E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS24245 7b66e3c6070537ea057f3af014c9666f 402 SUPERFAMILY SSF52172 278 396 2.42E-26 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS13585 90dbd93e948f55423a3179d69f2fd0d7 101 SUPERFAMILY SSF55248 1 95 2.09E-34 T 23-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 RPE_RS13585 90dbd93e948f55423a3179d69f2fd0d7 101 Hamap MF_00434 Putative pterin-4-alpha-carbinolamine dehydratase. 2 95 24.69 T 23-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 RPE_RS13585 90dbd93e948f55423a3179d69f2fd0d7 101 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 4 94 5.9E-32 T 23-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 RPE_RS13585 90dbd93e948f55423a3179d69f2fd0d7 101 Gene3D G3DSA:3.30.1360.20 2 95 6.0E-36 T 23-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 RPE_RS13585 90dbd93e948f55423a3179d69f2fd0d7 101 PANTHER PTHR12599 2 96 6.4E-44 T 23-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 RPE_RS07050 2c6f2035bbd3df0457fe976cb6e97aec 579 Gene3D G3DSA:2.30.30.60 382 431 4.2E-19 T 23-04-2016 RPE_RS07050 2c6f2035bbd3df0457fe976cb6e97aec 579 SUPERFAMILY SSF50182 367 432 1.41E-15 T 23-04-2016 IPR010920 LSM domain RPE_RS07050 2c6f2035bbd3df0457fe976cb6e97aec 579 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 396 430 - T 23-04-2016 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 RPE_RS07050 2c6f2035bbd3df0457fe976cb6e97aec 579 SUPERFAMILY SSF82689 434 536 6.15E-14 T 23-04-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 RPE_RS07050 2c6f2035bbd3df0457fe976cb6e97aec 579 Gene3D G3DSA:3.30.70.100 446 523 1.5E-4 T 23-04-2016 RPE_RS07050 2c6f2035bbd3df0457fe976cb6e97aec 579 SUPERFAMILY SSF82861 281 365 8.5E-10 T 23-04-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 RPE_RS07050 2c6f2035bbd3df0457fe976cb6e97aec 579 PANTHER PTHR30566 249 538 1.5E-52 T 23-04-2016 RPE_RS07050 2c6f2035bbd3df0457fe976cb6e97aec 579 PANTHER PTHR30566:SF5 249 538 1.5E-52 T 23-04-2016 RPE_RS07050 2c6f2035bbd3df0457fe976cb6e97aec 579 Pfam PF00924 Mechanosensitive ion channel 325 523 4.8E-44 T 23-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 RPE_RS03910 b82b9be8228f4bcf11634e6f866de215 421 Pfam PF00460 Flagella basal body rod protein 7 37 1.7E-8 T 23-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RPE_RS03910 b82b9be8228f4bcf11634e6f866de215 421 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 6 401 3.8E-84 T 23-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G RPE_RS03910 b82b9be8228f4bcf11634e6f866de215 421 PANTHER PTHR30435:SF1 1 128 2.5E-74 T 23-04-2016 RPE_RS03910 b82b9be8228f4bcf11634e6f866de215 421 PANTHER PTHR30435:SF1 298 421 2.5E-74 T 23-04-2016 RPE_RS03910 b82b9be8228f4bcf11634e6f866de215 421 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 342 418 2.2E-15 T 23-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RPE_RS03910 b82b9be8228f4bcf11634e6f866de215 421 PANTHER PTHR30435 1 128 2.5E-74 T 23-04-2016 RPE_RS03910 b82b9be8228f4bcf11634e6f866de215 421 PANTHER PTHR30435 298 421 2.5E-74 T 23-04-2016 RPE_RS03910 b82b9be8228f4bcf11634e6f866de215 421 Pfam PF07559 Flagellar basal body protein FlaE 181 287 1.0E-11 T 23-04-2016 IPR011491 Flagellar hook protein FlgE RPE_RS03910 b82b9be8228f4bcf11634e6f866de215 421 SUPERFAMILY SSF117143 81 381 4.18E-66 T 23-04-2016 RPE_RS04930 3a0e9f8b6975d2c87fa7037a3a0ee652 151 PANTHER PTHR28055:SF1 1 151 6.8E-49 T 23-04-2016 RPE_RS04930 3a0e9f8b6975d2c87fa7037a3a0ee652 151 Gene3D G3DSA:1.10.1510.10 2 93 2.5E-31 T 23-04-2016 RPE_RS04930 3a0e9f8b6975d2c87fa7037a3a0ee652 151 Pfam PF09424 Yqey-like protein 4 149 1.6E-52 T 23-04-2016 IPR019004 Uncharacterised domain YOR215C, mitochondrial RPE_RS04930 3a0e9f8b6975d2c87fa7037a3a0ee652 151 Gene3D G3DSA:1.10.10.410 94 149 2.0E-22 T 23-04-2016 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal RPE_RS04930 3a0e9f8b6975d2c87fa7037a3a0ee652 151 SUPERFAMILY SSF89095 1 149 1.36E-41 T 23-04-2016 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 RPE_RS04930 3a0e9f8b6975d2c87fa7037a3a0ee652 151 PANTHER PTHR28055 1 151 6.8E-49 T 23-04-2016 RPE_RS16480 122099e7716b0f46f6bd024fecc20ce9 67 PIRSF PIRSF002599 1 67 1.2E-21 T 23-04-2016 IPR012156 Cold shock, CspA GO:0003676 RPE_RS16480 122099e7716b0f46f6bd024fecc20ce9 67 Gene3D G3DSA:2.40.50.140 1 65 3.5E-27 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS16480 122099e7716b0f46f6bd024fecc20ce9 67 SUPERFAMILY SSF50249 1 65 1.01E-21 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS16480 122099e7716b0f46f6bd024fecc20ce9 67 PRINTS PR00050 Cold shock protein signature 40 58 8.2E-12 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RPE_RS16480 122099e7716b0f46f6bd024fecc20ce9 67 PRINTS PR00050 Cold shock protein signature 4 19 8.2E-12 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RPE_RS16480 122099e7716b0f46f6bd024fecc20ce9 67 PRINTS PR00050 Cold shock protein signature 25 34 8.2E-12 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RPE_RS16480 122099e7716b0f46f6bd024fecc20ce9 67 PANTHER PTHR11544 1 63 7.4E-21 T 23-04-2016 RPE_RS16480 122099e7716b0f46f6bd024fecc20ce9 67 SMART SM00357 3 67 1.8E-22 T 23-04-2016 IPR011129 Cold shock protein GO:0003676 RPE_RS16480 122099e7716b0f46f6bd024fecc20ce9 67 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 23-04-2016 IPR019844 Cold-shock conserved site RPE_RS16480 122099e7716b0f46f6bd024fecc20ce9 67 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 1.1E-23 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RPE_RS14445 a3731853873f27687053d3bde36a9240 628 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 48 172 9.0E-29 T 23-04-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component RPE_RS14445 a3731853873f27687053d3bde36a9240 628 PANTHER PTHR33362:SF8 66 627 3.1E-296 T 23-04-2016 RPE_RS14445 a3731853873f27687053d3bde36a9240 628 PANTHER PTHR33362 66 627 3.1E-296 T 23-04-2016 RPE_RS14445 a3731853873f27687053d3bde36a9240 628 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 224 625 7.3E-86 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RPE_RS14445 a3731853873f27687053d3bde36a9240 628 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 214 623 6.2E-94 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RPE_RS09125 afd16cec98b2bc07c38d3a60d47acf0e 279 Pfam PF00494 Squalene/phytoene synthase 16 260 2.9E-64 T 23-04-2016 IPR002060 Squalene/phytoene synthase GO:0009058|GO:0016740 RPE_RS09125 afd16cec98b2bc07c38d3a60d47acf0e 279 ProSitePatterns PS01044 Squalene and phytoene synthases signature 1. 125 140 - T 23-04-2016 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 RPE_RS09125 afd16cec98b2bc07c38d3a60d47acf0e 279 TIGRFAM TIGR03465 HpnD: squalene synthase HpnD 16 277 3.7E-101 T 23-04-2016 IPR017828 Squalene/phytoene synthase HpnD GO:0016117|GO:0016767 RPE_RS09125 afd16cec98b2bc07c38d3a60d47acf0e 279 Gene3D G3DSA:1.10.600.10 17 275 1.5E-69 T 23-04-2016 IPR008949 Isoprenoid synthase domain RPE_RS09125 afd16cec98b2bc07c38d3a60d47acf0e 279 ProSitePatterns PS01045 Squalene and phytoene synthases signature 2. 155 180 - T 23-04-2016 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 RPE_RS09125 afd16cec98b2bc07c38d3a60d47acf0e 279 PANTHER PTHR31480 18 275 1.4E-101 T 23-04-2016 RPE_RS09125 afd16cec98b2bc07c38d3a60d47acf0e 279 PANTHER PTHR31480:SF5 18 275 1.4E-101 T 23-04-2016 RPE_RS09125 afd16cec98b2bc07c38d3a60d47acf0e 279 SUPERFAMILY SSF48576 17 277 7.48E-71 T 23-04-2016 IPR008949 Isoprenoid synthase domain RPE_RS19685 3754dcc7c68fcc543abd37bdb0dfb27b 450 PANTHER PTHR13932 3 446 2.6E-173 T 23-04-2016 RPE_RS19685 3754dcc7c68fcc543abd37bdb0dfb27b 450 Pfam PF04055 Radical SAM superfamily 52 222 1.6E-21 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RPE_RS19685 3754dcc7c68fcc543abd37bdb0dfb27b 450 Gene3D G3DSA:3.80.30.20 46 247 1.4E-29 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RPE_RS19685 3754dcc7c68fcc543abd37bdb0dfb27b 450 PANTHER PTHR13932:SF6 3 446 2.6E-173 T 23-04-2016 RPE_RS19685 3754dcc7c68fcc543abd37bdb0dfb27b 450 SMART SM00729 46 267 8.9E-50 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RPE_RS19685 3754dcc7c68fcc543abd37bdb0dfb27b 450 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 5 443 2.5E-137 T 23-04-2016 IPR004558 Coproporphyrinogen III oxidase, oxygen-independent, HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.99.22|UniPathway: UPA00251 RPE_RS19685 3754dcc7c68fcc543abd37bdb0dfb27b 450 PIRSF PIRSF000167 1 450 1.6E-165 T 23-04-2016 IPR004558 Coproporphyrinogen III oxidase, oxygen-independent, HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.99.22|UniPathway: UPA00251 RPE_RS19685 3754dcc7c68fcc543abd37bdb0dfb27b 450 SUPERFAMILY SSF102114 6 439 3.92E-120 T 23-04-2016 RPE_RS16715 137237a501712f95adb279218383d673 404 Pfam PF01168 Alanine racemase, N-terminal domain 33 246 5.8E-50 T 23-04-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RPE_RS16715 137237a501712f95adb279218383d673 404 PRINTS PR00992 Alanine racemase signature 273 288 8.7E-40 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RPE_RS16715 137237a501712f95adb279218383d673 404 PRINTS PR00992 Alanine racemase signature 148 160 8.7E-40 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RPE_RS16715 137237a501712f95adb279218383d673 404 PRINTS PR00992 Alanine racemase signature 181 192 8.7E-40 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RPE_RS16715 137237a501712f95adb279218383d673 404 PRINTS PR00992 Alanine racemase signature 219 246 8.7E-40 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RPE_RS16715 137237a501712f95adb279218383d673 404 PRINTS PR00992 Alanine racemase signature 51 67 8.7E-40 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RPE_RS16715 137237a501712f95adb279218383d673 404 PRINTS PR00992 Alanine racemase signature 290 305 8.7E-40 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RPE_RS16715 137237a501712f95adb279218383d673 404 PRINTS PR00992 Alanine racemase signature 370 383 8.7E-40 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RPE_RS16715 137237a501712f95adb279218383d673 404 PRINTS PR00992 Alanine racemase signature 87 105 8.7E-40 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RPE_RS16715 137237a501712f95adb279218383d673 404 SMART SM01005 257 388 6.2E-65 T 23-04-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RPE_RS16715 137237a501712f95adb279218383d673 404 Hamap MF_01201 Alanine racemase. 26 388 28.672 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RPE_RS16715 137237a501712f95adb279218383d673 404 SUPERFAMILY SSF51419 33 257 1.11E-55 T 23-04-2016 IPR029066 PLP-binding barrel RPE_RS16715 137237a501712f95adb279218383d673 404 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 56 66 - T 23-04-2016 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RPE_RS16715 137237a501712f95adb279218383d673 404 PANTHER PTHR30511 23 393 9.6E-92 T 23-04-2016 RPE_RS16715 137237a501712f95adb279218383d673 404 TIGRFAM TIGR00492 alr: alanine racemase 30 387 1.1E-69 T 23-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RPE_RS16715 137237a501712f95adb279218383d673 404 Gene3D G3DSA:3.20.20.10 35 240 2.4E-52 T 23-04-2016 IPR029066 PLP-binding barrel RPE_RS16715 137237a501712f95adb279218383d673 404 Pfam PF00842 Alanine racemase, C-terminal domain 257 387 6.7E-38 T 23-04-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RPE_RS16715 137237a501712f95adb279218383d673 404 Gene3D G3DSA:2.40.37.10 241 389 5.5E-53 T 23-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 RPE_RS16715 137237a501712f95adb279218383d673 404 PANTHER PTHR30511:SF0 23 393 9.6E-92 T 23-04-2016 RPE_RS16715 137237a501712f95adb279218383d673 404 SUPERFAMILY SSF50621 250 390 3.84E-44 T 23-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 RPE_RS24750 fd47e48b2a7c877b99b4adf243476ed1 247 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 171 246 1.5E-14 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 RPE_RS24750 fd47e48b2a7c877b99b4adf243476ed1 247 PANTHER PTHR33446:SF2 159 246 8.9E-12 T 23-04-2016 RPE_RS24750 fd47e48b2a7c877b99b4adf243476ed1 247 SUPERFAMILY SSF74653 131 246 1.03E-19 T 23-04-2016 RPE_RS24750 fd47e48b2a7c877b99b4adf243476ed1 247 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 170 245 5.9E-12 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 RPE_RS24750 fd47e48b2a7c877b99b4adf243476ed1 247 Gene3D G3DSA:3.30.1150.10 141 246 2.0E-21 T 23-04-2016 RPE_RS24750 fd47e48b2a7c877b99b4adf243476ed1 247 PANTHER PTHR33446 159 246 8.9E-12 T 23-04-2016 RPE_RS07020 878587f1136176aa293f4e3d0010c336 480 Pfam PF01381 Helix-turn-helix 16 69 3.0E-13 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RPE_RS07020 878587f1136176aa293f4e3d0010c336 480 SMART SM00530 14 69 6.1E-15 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RPE_RS07020 878587f1136176aa293f4e3d0010c336 480 SUPERFAMILY SSF47413 10 75 6.44E-15 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS07020 878587f1136176aa293f4e3d0010c336 480 Pfam PF06114 Domain of unknown function (DUF955) 193 316 1.1E-17 T 23-04-2016 IPR010359 HTH domain, IrrE-type RPE_RS07020 878587f1136176aa293f4e3d0010c336 480 Pfam PF09856 Predicted transcriptional regulator (DUF2083) 317 472 2.8E-67 T 23-04-2016 IPR018653 Domain of unknown function DUF2083,transcriptional regulator RPE_RS07020 878587f1136176aa293f4e3d0010c336 480 PANTHER PTHR10245 9 106 1.1E-16 T 23-04-2016 RPE_RS07020 878587f1136176aa293f4e3d0010c336 480 Gene3D G3DSA:1.10.260.40 10 75 1.1E-16 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS07020 878587f1136176aa293f4e3d0010c336 480 PIRSF PIRSF019251 4 477 8.3E-184 T 23-04-2016 IPR026281 HTH-type transcriptional regulator RamB GO:0006355 RPE_RS11430 22ba127ab777d026c3023c3967ef729d 255 Pfam PF12697 Alpha/beta hydrolase family 28 248 2.3E-16 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS11430 22ba127ab777d026c3023c3967ef729d 255 PANTHER PTHR10992 22 134 2.5E-24 T 23-04-2016 RPE_RS11430 22ba127ab777d026c3023c3967ef729d 255 PANTHER PTHR10992 159 252 2.5E-24 T 23-04-2016 RPE_RS11430 22ba127ab777d026c3023c3967ef729d 255 Gene3D G3DSA:3.40.50.1820 25 253 2.8E-41 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS11430 22ba127ab777d026c3023c3967ef729d 255 SUPERFAMILY SSF53474 22 252 7.9E-35 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS05045 504c24c308831f1a545e11178f813471 234 Pfam PF00005 ABC transporter 17 161 4.4E-28 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS05045 504c24c308831f1a545e11178f813471 234 PANTHER PTHR24220 3 234 5.4E-118 T 23-04-2016 RPE_RS05045 504c24c308831f1a545e11178f813471 234 PANTHER PTHR24220:SF568 3 234 5.4E-118 T 23-04-2016 RPE_RS05045 504c24c308831f1a545e11178f813471 234 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS05045 504c24c308831f1a545e11178f813471 234 Gene3D G3DSA:3.40.50.300 2 230 4.6E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS05045 504c24c308831f1a545e11178f813471 234 SMART SM00382 26 212 1.6E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS05045 504c24c308831f1a545e11178f813471 234 SUPERFAMILY SSF52540 2 226 2.11E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS21785 4e17b5b3b85df0bdd71adf9a8d475a3c 358 Gene3D G3DSA:3.90.870.10 3 208 1.5E-88 T 23-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain RPE_RS21785 4e17b5b3b85df0bdd71adf9a8d475a3c 358 PANTHER PTHR21327:SF10 1 351 9.9E-202 T 23-04-2016 RPE_RS21785 4e17b5b3b85df0bdd71adf9a8d475a3c 358 PIRSF PIRSF001259 1 357 2.9E-109 T 23-04-2016 RPE_RS21785 4e17b5b3b85df0bdd71adf9a8d475a3c 358 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 1 198 2.4E-67 T 23-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RPE_RS21785 4e17b5b3b85df0bdd71adf9a8d475a3c 358 SUPERFAMILY SSF55821 3 201 1.28E-75 T 23-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain RPE_RS21785 4e17b5b3b85df0bdd71adf9a8d475a3c 358 Pfam PF00925 GTP cyclohydrolase II 206 352 2.0E-20 T 23-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 RPE_RS21785 4e17b5b3b85df0bdd71adf9a8d475a3c 358 PANTHER PTHR21327 1 351 9.9E-202 T 23-04-2016 RPE_RS21785 4e17b5b3b85df0bdd71adf9a8d475a3c 358 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 6 197 3.4E-78 T 23-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RPE_RS21785 4e17b5b3b85df0bdd71adf9a8d475a3c 358 SUPERFAMILY SSF142695 203 352 4.05E-37 T 23-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 RPE_RS18010 0e0dbe2babaa3f025aafe69098809aa2 685 SUPERFAMILY SSF51905 411 427 1.42E-28 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS18010 0e0dbe2babaa3f025aafe69098809aa2 685 SUPERFAMILY SSF51905 2 315 1.42E-28 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS18010 0e0dbe2babaa3f025aafe69098809aa2 685 PANTHER PTHR10742 287 472 2.2E-28 T 23-04-2016 RPE_RS18010 0e0dbe2babaa3f025aafe69098809aa2 685 PANTHER PTHR10742 1 269 2.2E-28 T 23-04-2016 RPE_RS18010 0e0dbe2babaa3f025aafe69098809aa2 685 Gene3D G3DSA:3.40.50.150 487 641 7.3E-11 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS18010 0e0dbe2babaa3f025aafe69098809aa2 685 SUPERFAMILY SSF53335 471 645 1.24E-12 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS18010 0e0dbe2babaa3f025aafe69098809aa2 685 Gene3D G3DSA:3.50.50.60 190 290 1.2E-8 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS18010 0e0dbe2babaa3f025aafe69098809aa2 685 Gene3D G3DSA:3.50.50.60 414 426 1.2E-8 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS18010 0e0dbe2babaa3f025aafe69098809aa2 685 SUPERFAMILY SSF54373 294 391 3.92E-9 T 23-04-2016 RPE_RS18010 0e0dbe2babaa3f025aafe69098809aa2 685 Gene3D G3DSA:3.90.660.10 295 389 1.2E-9 T 23-04-2016 RPE_RS18010 0e0dbe2babaa3f025aafe69098809aa2 685 Gene3D G3DSA:3.90.660.10 38 112 1.2E-9 T 23-04-2016 RPE_RS18010 0e0dbe2babaa3f025aafe69098809aa2 685 Pfam PF08241 Methyltransferase domain 512 597 9.3E-7 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 RPE_RS18010 0e0dbe2babaa3f025aafe69098809aa2 685 Pfam PF01593 Flavin containing amine oxidoreductase 12 434 4.2E-23 T 23-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 RPE_RS18010 0e0dbe2babaa3f025aafe69098809aa2 685 Gene3D G3DSA:3.40.50.720 3 37 7.8E-9 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS00555 798839b72efe5eb189122b2630e180e3 331 Gene3D G3DSA:3.30.470.20 66 83 5.1E-5 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RPE_RS00555 798839b72efe5eb189122b2630e180e3 331 Gene3D G3DSA:3.30.470.20 241 303 5.1E-5 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RPE_RS00555 798839b72efe5eb189122b2630e180e3 331 Gene3D G3DSA:3.30.470.20 162 192 5.1E-5 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RPE_RS00555 798839b72efe5eb189122b2630e180e3 331 SUPERFAMILY SSF56059 66 195 1.3E-17 T 23-04-2016 RPE_RS00555 798839b72efe5eb189122b2630e180e3 331 SUPERFAMILY SSF56059 246 303 1.3E-17 T 23-04-2016 RPE_RS06435 9380614bebac5a61f6402cfc4bd4c39f 714 SUPERFAMILY SSF51011 602 711 1.8E-25 T 23-04-2016 RPE_RS06435 9380614bebac5a61f6402cfc4bd4c39f 714 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 23 111 1.7E-20 T 23-04-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 RPE_RS06435 9380614bebac5a61f6402cfc4bd4c39f 714 Pfam PF00128 Alpha amylase, catalytic domain 205 310 3.9E-11 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RPE_RS06435 9380614bebac5a61f6402cfc4bd4c39f 714 PANTHER PTHR10357 622 711 0.0 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RPE_RS06435 9380614bebac5a61f6402cfc4bd4c39f 714 PANTHER PTHR10357 4 593 0.0 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RPE_RS06435 9380614bebac5a61f6402cfc4bd4c39f 714 Gene3D G3DSA:2.60.40.10 19 169 5.2E-57 T 23-04-2016 IPR013783 Immunoglobulin-like fold RPE_RS06435 9380614bebac5a61f6402cfc4bd4c39f 714 SUPERFAMILY SSF51445 153 484 1.04E-134 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RPE_RS06435 9380614bebac5a61f6402cfc4bd4c39f 714 SUPERFAMILY SSF51445 513 591 1.04E-134 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RPE_RS06435 9380614bebac5a61f6402cfc4bd4c39f 714 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 19 709 0.0 T 23-04-2016 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 UniPathway: UPA00165 RPE_RS06435 9380614bebac5a61f6402cfc4bd4c39f 714 PANTHER PTHR10357:SF74 622 711 0.0 T 23-04-2016 RPE_RS06435 9380614bebac5a61f6402cfc4bd4c39f 714 PANTHER PTHR10357:SF74 4 593 0.0 T 23-04-2016 RPE_RS06435 9380614bebac5a61f6402cfc4bd4c39f 714 Gene3D G3DSA:2.60.40.1180 602 711 2.8E-28 T 23-04-2016 IPR013780 Glycosyl hydrolase, all-beta RPE_RS06435 9380614bebac5a61f6402cfc4bd4c39f 714 SUPERFAMILY SSF81296 19 165 2.69E-50 T 23-04-2016 IPR014756 Immunoglobulin E-set RPE_RS06435 9380614bebac5a61f6402cfc4bd4c39f 714 Gene3D G3DSA:3.20.20.80 170 591 8.4E-127 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RPE_RS06435 9380614bebac5a61f6402cfc4bd4c39f 714 SMART SM00642 172 582 1.5E-7 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RPE_RS13750 d79a9883300453bdf3784f8e3f47dc7a 1040 Gene3D G3DSA:1.20.1640.10 285 497 1.1E-59 T 23-04-2016 RPE_RS13750 d79a9883300453bdf3784f8e3f47dc7a 1040 Pfam PF00873 AcrB/AcrD/AcrF family 5 1013 0.0 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS13750 d79a9883300453bdf3784f8e3f47dc7a 1040 SUPERFAMILY SSF82866 290 490 7.32E-49 T 23-04-2016 RPE_RS13750 d79a9883300453bdf3784f8e3f47dc7a 1040 SUPERFAMILY SSF82866 794 1017 6.41E-41 T 23-04-2016 RPE_RS13750 d79a9883300453bdf3784f8e3f47dc7a 1040 PANTHER PTHR32063 1 1022 0.0 T 23-04-2016 RPE_RS13750 d79a9883300453bdf3784f8e3f47dc7a 1040 SUPERFAMILY SSF82714 183 266 7.85E-16 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS13750 d79a9883300453bdf3784f8e3f47dc7a 1040 SUPERFAMILY SSF82714 711 791 7.59E-17 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS13750 d79a9883300453bdf3784f8e3f47dc7a 1040 Gene3D G3DSA:1.10.3850.10 798 1015 1.1E-50 T 23-04-2016 RPE_RS13750 d79a9883300453bdf3784f8e3f47dc7a 1040 Gene3D G3DSA:3.30.2090.10 711 792 2.5E-18 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS13750 d79a9883300453bdf3784f8e3f47dc7a 1040 Gene3D G3DSA:3.30.2090.10 182 265 1.9E-16 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS13750 d79a9883300453bdf3784f8e3f47dc7a 1040 SUPERFAMILY SSF82693 136 182 3.01E-25 T 23-04-2016 RPE_RS13750 d79a9883300453bdf3784f8e3f47dc7a 1040 SUPERFAMILY SSF82693 556 655 5.75E-13 T 23-04-2016 RPE_RS13750 d79a9883300453bdf3784f8e3f47dc7a 1040 Gene3D G3DSA:3.30.70.1430 563 650 2.1E-7 T 23-04-2016 RPE_RS13750 d79a9883300453bdf3784f8e3f47dc7a 1040 PANTHER PTHR32063:SF21 1 1022 0.0 T 23-04-2016 RPE_RS13750 d79a9883300453bdf3784f8e3f47dc7a 1040 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 8.2E-71 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS13750 d79a9883300453bdf3784f8e3f47dc7a 1040 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 8.2E-71 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS13750 d79a9883300453bdf3784f8e3f47dc7a 1040 PRINTS PR00702 Acriflavin resistance protein family signature 610 624 8.2E-71 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS13750 d79a9883300453bdf3784f8e3f47dc7a 1040 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 8.2E-71 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS13750 d79a9883300453bdf3784f8e3f47dc7a 1040 PRINTS PR00702 Acriflavin resistance protein family signature 543 560 8.2E-71 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS13750 d79a9883300453bdf3784f8e3f47dc7a 1040 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 8.2E-71 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS13750 d79a9883300453bdf3784f8e3f47dc7a 1040 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 8.2E-71 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS13750 d79a9883300453bdf3784f8e3f47dc7a 1040 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 8.2E-71 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS13750 d79a9883300453bdf3784f8e3f47dc7a 1040 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 8.2E-71 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS13750 d79a9883300453bdf3784f8e3f47dc7a 1040 SUPERFAMILY SSF82693 40 133 3.14E-24 T 23-04-2016 RPE_RS13750 d79a9883300453bdf3784f8e3f47dc7a 1040 Gene3D G3DSA:3.30.70.1430 40 142 4.7E-30 T 23-04-2016 RPE_RS13750 d79a9883300453bdf3784f8e3f47dc7a 1040 SUPERFAMILY SSF82693 268 324 3.01E-25 T 23-04-2016 RPE_RS02675 71c6b0d615d446aedecef4c5375e2a03 398 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 9 130 2.1E-17 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS02675 71c6b0d615d446aedecef4c5375e2a03 398 Gene3D G3DSA:1.10.540.10 8 132 2.6E-25 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS02675 71c6b0d615d446aedecef4c5375e2a03 398 SUPERFAMILY SSF56645 10 253 3.53E-70 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RPE_RS02675 71c6b0d615d446aedecef4c5375e2a03 398 PANTHER PTHR10909:SF242 7 396 9.9E-164 T 23-04-2016 RPE_RS02675 71c6b0d615d446aedecef4c5375e2a03 398 Gene3D G3DSA:1.20.140.10 229 397 1.7E-22 T 23-04-2016 RPE_RS02675 71c6b0d615d446aedecef4c5375e2a03 398 Gene3D G3DSA:2.40.110.10 133 228 2.7E-35 T 23-04-2016 RPE_RS02675 71c6b0d615d446aedecef4c5375e2a03 398 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 134 228 9.6E-20 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RPE_RS02675 71c6b0d615d446aedecef4c5375e2a03 398 SUPERFAMILY SSF47203 240 396 4.38E-16 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS02675 71c6b0d615d446aedecef4c5375e2a03 398 PANTHER PTHR10909 7 396 9.9E-164 T 23-04-2016 RPE_RS02675 71c6b0d615d446aedecef4c5375e2a03 398 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 240 393 3.4E-24 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS15235 e953a46e190393ccb61beccacfa52c6a 153 PANTHER PTHR33221:SF7 2 139 4.7E-65 T 23-04-2016 RPE_RS15235 e953a46e190393ccb61beccacfa52c6a 153 SUPERFAMILY SSF46785 4 136 7.27E-29 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS15235 e953a46e190393ccb61beccacfa52c6a 153 PANTHER PTHR33221 2 139 4.7E-65 T 23-04-2016 RPE_RS15235 e953a46e190393ccb61beccacfa52c6a 153 Gene3D G3DSA:1.10.10.10 1 140 8.1E-43 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS15235 e953a46e190393ccb61beccacfa52c6a 153 Pfam PF02082 Transcriptional regulator 1 81 5.5E-21 T 23-04-2016 IPR000944 Transcription regulator Rrf2-type RPE_RS06785 e63ba9e9f4e9b03506eb70c3526a5e3a 427 Gene3D G3DSA:3.40.50.1980 252 377 1.3E-5 T 23-04-2016 RPE_RS06785 e63ba9e9f4e9b03506eb70c3526a5e3a 427 SUPERFAMILY SSF53807 21 422 4.25E-75 T 23-04-2016 RPE_RS06785 e63ba9e9f4e9b03506eb70c3526a5e3a 427 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 30 416 2.3E-30 T 23-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 RPE_RS06785 e63ba9e9f4e9b03506eb70c3526a5e3a 427 Gene3D G3DSA:3.40.50.1980 30 166 3.9E-8 T 23-04-2016 RPE_RS06785 e63ba9e9f4e9b03506eb70c3526a5e3a 427 PIRSF PIRSF000162 5 427 5.0E-179 T 23-04-2016 IPR005970 Light-independent protochlorophyllide reductase, N subunit GO:0015995|GO:0016730|GO:0019685|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RPE_RS06785 e63ba9e9f4e9b03506eb70c3526a5e3a 427 TIGRFAM TIGR01279 DPOR_bchN: light-independent protochlorophyllide reductase, N subunit 21 426 2.2E-154 T 23-04-2016 IPR005970 Light-independent protochlorophyllide reductase, N subunit GO:0015995|GO:0016730|GO:0019685|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RPE_RS06785 e63ba9e9f4e9b03506eb70c3526a5e3a 427 Hamap MF_00352 Light-independent protochlorophyllide reductase subunit N [bchN]. 16 426 55.585 T 23-04-2016 IPR005970 Light-independent protochlorophyllide reductase, N subunit GO:0015995|GO:0016730|GO:0019685|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RPE_RS06785 e63ba9e9f4e9b03506eb70c3526a5e3a 427 PANTHER PTHR39429:SF1 22 425 1.7E-82 T 23-04-2016 RPE_RS06785 e63ba9e9f4e9b03506eb70c3526a5e3a 427 PANTHER PTHR39429 22 425 1.7E-82 T 23-04-2016 RPE_RS07500 903f11911a88ce30024fca7049126d56 168 SUPERFAMILY SSF47240 2 159 3.79E-57 T 23-04-2016 IPR009078 Ferritin-like superfamily RPE_RS07500 903f11911a88ce30024fca7049126d56 168 PANTHER PTHR30565 1 166 1.0E-70 T 23-04-2016 RPE_RS07500 903f11911a88ce30024fca7049126d56 168 Pfam PF05974 Domain of unknown function (DUF892) 10 167 2.1E-62 T 23-04-2016 IPR010287 Domain of unknown function DUF892 RPE_RS07500 903f11911a88ce30024fca7049126d56 168 Gene3D G3DSA:1.20.1260.10 3 167 4.0E-70 T 23-04-2016 IPR012347 Ferritin-related RPE_RS01415 9ffc641f67ff71582f3bb15a7e260889 292 PRINTS PR00126 ATP synthase gamma subunit signature 239 258 1.5E-27 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RPE_RS01415 9ffc641f67ff71582f3bb15a7e260889 292 PRINTS PR00126 ATP synthase gamma subunit signature 76 95 1.5E-27 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RPE_RS01415 9ffc641f67ff71582f3bb15a7e260889 292 PRINTS PR00126 ATP synthase gamma subunit signature 171 188 1.5E-27 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RPE_RS01415 9ffc641f67ff71582f3bb15a7e260889 292 PRINTS PR00126 ATP synthase gamma subunit signature 270 291 1.5E-27 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RPE_RS01415 9ffc641f67ff71582f3bb15a7e260889 292 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 278 291 - T 23-04-2016 IPR023632 ATPase, F1 complex, gamma subunit conserved site RPE_RS01415 9ffc641f67ff71582f3bb15a7e260889 292 Gene3D G3DSA:1.10.287.80 242 287 3.0E-25 T 23-04-2016 RPE_RS01415 9ffc641f67ff71582f3bb15a7e260889 292 Pfam PF00231 ATP synthase 3 291 8.4E-85 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RPE_RS01415 9ffc641f67ff71582f3bb15a7e260889 292 PANTHER PTHR11693 1 292 2.5E-115 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RPE_RS01415 9ffc641f67ff71582f3bb15a7e260889 292 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 292 31.958 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RPE_RS01415 9ffc641f67ff71582f3bb15a7e260889 292 SUPERFAMILY SSF52943 2 292 9.55E-83 T 23-04-2016 IPR023633 ATPase, F1 complex, gamma subunit domain RPE_RS01415 9ffc641f67ff71582f3bb15a7e260889 292 PIRSF PIRSF039089 1 292 3.0E-97 T 23-04-2016 RPE_RS01415 9ffc641f67ff71582f3bb15a7e260889 292 Gene3D G3DSA:1.10.287.80 207 241 3.9E-30 T 23-04-2016 RPE_RS01415 9ffc641f67ff71582f3bb15a7e260889 292 Gene3D G3DSA:1.10.287.80 19 60 3.9E-30 T 23-04-2016 RPE_RS01415 9ffc641f67ff71582f3bb15a7e260889 292 Gene3D G3DSA:3.40.1380.10 73 196 5.1E-32 T 23-04-2016 RPE_RS01415 9ffc641f67ff71582f3bb15a7e260889 292 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 292 5.5E-96 T 23-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RPE_RS16905 ae5653ec8ab055759a34a90667008f14 433 SUPERFAMILY SSF51338 375 431 2.1E-26 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RPE_RS16905 ae5653ec8ab055759a34a90667008f14 433 SUPERFAMILY SSF51338 8 63 2.1E-26 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RPE_RS16905 ae5653ec8ab055759a34a90667008f14 433 Gene3D G3DSA:2.30.40.10 8 78 5.5E-14 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RPE_RS16905 ae5653ec8ab055759a34a90667008f14 433 PANTHER PTHR11647 1 431 9.2E-138 T 23-04-2016 RPE_RS16905 ae5653ec8ab055759a34a90667008f14 433 PANTHER PTHR11647:SF70 1 431 9.2E-138 T 23-04-2016 RPE_RS16905 ae5653ec8ab055759a34a90667008f14 433 SUPERFAMILY SSF51556 64 377 9.18E-96 T 23-04-2016 IPR032466 Metal-dependent hydrolase RPE_RS16905 ae5653ec8ab055759a34a90667008f14 433 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 27 431 6.5E-106 T 23-04-2016 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 RPE_RS16905 ae5653ec8ab055759a34a90667008f14 433 Pfam PF01979 Amidohydrolase family 60 429 5.1E-25 T 23-04-2016 IPR006680 Amidohydrolase-related GO:0016787 RPE_RS16905 ae5653ec8ab055759a34a90667008f14 433 Gene3D G3DSA:3.20.20.140 79 414 1.3E-90 T 23-04-2016 RPE_RS16905 ae5653ec8ab055759a34a90667008f14 433 Hamap MF_00220_B Dihydroorotase [pyrC]. 7 433 35.65 T 23-04-2016 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 RPE_RS21975 060b11c7e2d3bb69c6c9fd29b1b4b2cf 631 Gene3D G3DSA:3.30.70.1230 423 565 5.9E-27 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RPE_RS21975 060b11c7e2d3bb69c6c9fd29b1b4b2cf 631 Pfam PF05226 CHASE2 domain 23 327 2.4E-45 T 23-04-2016 IPR007890 CHASE2 RPE_RS21975 060b11c7e2d3bb69c6c9fd29b1b4b2cf 631 PANTHER PTHR11920:SF257 398 562 4.4E-19 T 23-04-2016 RPE_RS21975 060b11c7e2d3bb69c6c9fd29b1b4b2cf 631 SUPERFAMILY SSF55073 419 612 4.87E-38 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS21975 060b11c7e2d3bb69c6c9fd29b1b4b2cf 631 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 424 564 2.1E-16 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RPE_RS21975 060b11c7e2d3bb69c6c9fd29b1b4b2cf 631 PANTHER PTHR11920 398 562 4.4E-19 T 23-04-2016 RPE_RS21975 060b11c7e2d3bb69c6c9fd29b1b4b2cf 631 SMART SM00044 384 595 2.6E-4 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RPE_RS21975 060b11c7e2d3bb69c6c9fd29b1b4b2cf 631 SMART SM01080 34 329 3.7E-64 T 23-04-2016 IPR007890 CHASE2 RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 Pfam PF00122 E1-E2 ATPase 306 529 2.2E-65 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 PANTHER PTHR24093:SF50 187 850 1.1E-228 T 23-04-2016 RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 262 846 2.8E-186 T 23-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 684 694 3.0E-29 T 23-04-2016 RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 386 400 3.0E-29 T 23-04-2016 RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 760 772 3.0E-29 T 23-04-2016 RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 737 756 3.0E-29 T 23-04-2016 RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 538 552 3.0E-29 T 23-04-2016 RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 662 673 3.0E-29 T 23-04-2016 RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 540 546 - T 23-04-2016 IPR018303 P-type ATPase, phosphorylation site RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 Gene3D G3DSA:3.40.50.1000 509 551 1.2E-51 T 23-04-2016 IPR023214 HAD-like domain RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 Gene3D G3DSA:3.40.50.1000 665 804 1.2E-51 T 23-04-2016 IPR023214 HAD-like domain RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 243 847 3.1E-175 T 23-04-2016 RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 SUPERFAMILY SSF56784 536 556 3.23E-53 T 23-04-2016 IPR023214 HAD-like domain RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 SUPERFAMILY SSF56784 617 844 3.23E-53 T 23-04-2016 IPR023214 HAD-like domain RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 Pfam PF04945 YHS domain 1 39 4.2E-12 T 23-04-2016 IPR007029 YHS domain RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 Pfam PF04945 YHS domain 91 136 1.6E-17 T 23-04-2016 IPR007029 YHS domain RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 SUPERFAMILY SSF81665 303 339 3.01E-12 T 23-04-2016 RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 SUPERFAMILY SSF81665 437 532 3.01E-12 T 23-04-2016 RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 SUPERFAMILY SSF81665 786 813 3.01E-12 T 23-04-2016 RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 Pfam PF00702 haloacid dehalogenase-like hydrolase 534 751 7.0E-42 T 23-04-2016 RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 SUPERFAMILY SSF47240 11 38 1.41E-6 T 23-04-2016 IPR009078 Ferritin-like superfamily RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 Gene3D G3DSA:3.40.1110.10 552 664 1.4E-25 T 23-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 SMART SM00746 1 34 0.0051 T 23-04-2016 IPR011017 TRASH domain RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 SMART SM00746 93 131 5.5E-9 T 23-04-2016 IPR011017 TRASH domain RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 SUPERFAMILY SSF47240 88 134 9.73E-9 T 23-04-2016 IPR009078 Ferritin-like superfamily RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 SUPERFAMILY SSF81653 340 436 3.66E-25 T 23-04-2016 RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 Gene3D G3DSA:2.70.150.10 276 436 3.8E-28 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 307 815 9.6E-89 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 PANTHER PTHR24093 187 850 1.1E-228 T 23-04-2016 RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 PRINTS PR00943 Copper-transporting ATPase signature 810 824 9.2E-12 T 23-04-2016 RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 PRINTS PR00943 Copper-transporting ATPase signature 325 343 9.2E-12 T 23-04-2016 RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 PRINTS PR00943 Copper-transporting ATPase signature 521 536 9.2E-12 T 23-04-2016 RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 PRINTS PR00943 Copper-transporting ATPase signature 305 324 9.2E-12 T 23-04-2016 RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 PRINTS PR00943 Copper-transporting ATPase signature 459 473 9.2E-12 T 23-04-2016 RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 PRINTS PR00943 Copper-transporting ATPase signature 714 731 9.2E-12 T 23-04-2016 RPE_RS19705 50a8b4bf9c0752ebe0a122eb5af52abc 851 PRINTS PR00943 Copper-transporting ATPase signature 247 266 9.2E-12 T 23-04-2016 RPE_RS06340 ea6149785377a4b72b86b732d7893c3e 151 Pfam PF01037 Lrp/AsnC ligand binding domain 67 137 7.8E-21 T 23-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RPE_RS06340 ea6149785377a4b72b86b732d7893c3e 151 Gene3D G3DSA:3.30.70.920 54 150 4.1E-26 T 23-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RPE_RS06340 ea6149785377a4b72b86b732d7893c3e 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 8.3E-15 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RPE_RS06340 ea6149785377a4b72b86b732d7893c3e 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 8.3E-15 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RPE_RS06340 ea6149785377a4b72b86b732d7893c3e 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 8.3E-15 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RPE_RS06340 ea6149785377a4b72b86b732d7893c3e 151 SUPERFAMILY SSF54909 63 147 1.74E-20 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RPE_RS06340 ea6149785377a4b72b86b732d7893c3e 151 PANTHER PTHR30154:SF28 1 150 3.5E-61 T 23-04-2016 RPE_RS06340 ea6149785377a4b72b86b732d7893c3e 151 Pfam PF13412 Winged helix-turn-helix DNA-binding 1 48 4.8E-20 T 23-04-2016 RPE_RS06340 ea6149785377a4b72b86b732d7893c3e 151 Gene3D G3DSA:1.10.10.10 2 53 4.5E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS06340 ea6149785377a4b72b86b732d7893c3e 151 SUPERFAMILY SSF46785 1 60 1.72E-17 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS06340 ea6149785377a4b72b86b732d7893c3e 151 SMART SM00344 1 110 1.9E-43 T 23-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RPE_RS06340 ea6149785377a4b72b86b732d7893c3e 151 PANTHER PTHR30154 1 150 3.5E-61 T 23-04-2016 RPE_RS06340 ea6149785377a4b72b86b732d7893c3e 151 ProSitePatterns PS00519 AsnC-type HTH domain signature. 19 45 - T 23-04-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RPE_RS01225 9aea621a1d0e581c379422ae270d6c7b 266 PANTHER PTHR10953:SF153 2 261 2.1E-92 T 23-04-2016 RPE_RS01225 9aea621a1d0e581c379422ae270d6c7b 266 Gene3D G3DSA:3.40.50.720 3 252 2.1E-66 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS01225 9aea621a1d0e581c379422ae270d6c7b 266 Pfam PF00899 ThiF family 10 250 3.2E-58 T 23-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 RPE_RS01225 9aea621a1d0e581c379422ae270d6c7b 266 SUPERFAMILY SSF69572 2 258 8.24E-83 T 23-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 RPE_RS01225 9aea621a1d0e581c379422ae270d6c7b 266 PANTHER PTHR10953 2 261 2.1E-92 T 23-04-2016 RPE_RS00260 7efd9f03820722ad147b793443730c3f 279 SUPERFAMILY SSF52317 41 260 5.43E-38 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RPE_RS00260 7efd9f03820722ad147b793443730c3f 279 Pfam PF00117 Glutamine amidotransferase class-I 80 213 1.0E-13 T 23-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 RPE_RS00260 7efd9f03820722ad147b793443730c3f 279 PANTHER PTHR11922 25 220 3.4E-28 T 23-04-2016 RPE_RS00260 7efd9f03820722ad147b793443730c3f 279 PANTHER PTHR11922:SF11 25 220 3.4E-28 T 23-04-2016 RPE_RS00260 7efd9f03820722ad147b793443730c3f 279 Gene3D G3DSA:3.40.50.880 40 261 4.0E-46 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RPE_RS06030 98d20b4f1bc1c8cbc4edb9cb40f664bc 383 Gene3D G3DSA:1.20.1250.20 3 162 1.5E-9 T 23-04-2016 RPE_RS06030 98d20b4f1bc1c8cbc4edb9cb40f664bc 383 Gene3D G3DSA:1.20.1250.20 192 380 1.2E-24 T 23-04-2016 RPE_RS06030 98d20b4f1bc1c8cbc4edb9cb40f664bc 383 Pfam PF07690 Major Facilitator Superfamily 204 381 1.9E-15 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RPE_RS06030 98d20b4f1bc1c8cbc4edb9cb40f664bc 383 PANTHER PTHR23539:SF1 1 377 1.9E-79 T 23-04-2016 RPE_RS06030 98d20b4f1bc1c8cbc4edb9cb40f664bc 383 PANTHER PTHR23539 1 377 1.9E-79 T 23-04-2016 RPE_RS06030 98d20b4f1bc1c8cbc4edb9cb40f664bc 383 SUPERFAMILY SSF103473 3 379 5.62E-35 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS08120 c56a391f0cfbf409b026684f4b07967e 735 SUPERFAMILY SSF56042 565 727 1.12E-35 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RPE_RS08120 c56a391f0cfbf409b026684f4b07967e 735 TIGRFAM TIGR01736 FGAM_synth_II: phosphoribosylformylglycinamidine synthase II 17 730 4.8E-279 T 23-04-2016 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RPE_RS08120 c56a391f0cfbf409b026684f4b07967e 735 PANTHER PTHR10099:SF2 17 735 0.0 T 23-04-2016 RPE_RS08120 c56a391f0cfbf409b026684f4b07967e 735 Pfam PF00586 AIR synthase related protein, N-terminal domain 83 187 1.8E-23 T 23-04-2016 IPR016188 PurM-like, N-terminal domain RPE_RS08120 c56a391f0cfbf409b026684f4b07967e 735 Pfam PF00586 AIR synthase related protein, N-terminal domain 437 553 5.6E-19 T 23-04-2016 IPR016188 PurM-like, N-terminal domain RPE_RS08120 c56a391f0cfbf409b026684f4b07967e 735 Gene3D G3DSA:3.90.650.10 617 699 8.8E-4 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RPE_RS08120 c56a391f0cfbf409b026684f4b07967e 735 Gene3D G3DSA:3.90.650.10 212 355 6.9E-4 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RPE_RS08120 c56a391f0cfbf409b026684f4b07967e 735 Pfam PF02769 AIR synthase related protein, C-terminal domain 569 702 6.7E-19 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RPE_RS08120 c56a391f0cfbf409b026684f4b07967e 735 Pfam PF02769 AIR synthase related protein, C-terminal domain 201 353 8.8E-32 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RPE_RS08120 c56a391f0cfbf409b026684f4b07967e 735 PANTHER PTHR10099 17 735 0.0 T 23-04-2016 RPE_RS08120 c56a391f0cfbf409b026684f4b07967e 735 SUPERFAMILY SSF55326 396 561 1.44E-50 T 23-04-2016 RPE_RS08120 c56a391f0cfbf409b026684f4b07967e 735 Gene3D G3DSA:3.30.1330.10 49 193 1.5E-47 T 23-04-2016 IPR016188 PurM-like, N-terminal domain RPE_RS08120 c56a391f0cfbf409b026684f4b07967e 735 Gene3D G3DSA:3.30.1330.10 410 557 1.9E-52 T 23-04-2016 IPR016188 PurM-like, N-terminal domain RPE_RS08120 c56a391f0cfbf409b026684f4b07967e 735 SUPERFAMILY SSF55326 13 194 6.58E-51 T 23-04-2016 RPE_RS08120 c56a391f0cfbf409b026684f4b07967e 735 SUPERFAMILY SSF56042 200 422 2.54E-56 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RPE_RS08120 c56a391f0cfbf409b026684f4b07967e 735 PIRSF PIRSF001587 2 734 4.8E-280 T 23-04-2016 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RPE_RS08120 c56a391f0cfbf409b026684f4b07967e 735 Hamap MF_00420 Phosphoribosylformylglycinamidine synthase subunit PurL [purL]. 1 735 330.029 T 23-04-2016 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RPE_RS15910 089fd0e4d1ab4c5a22169d9daa0fc8cd 219 Pfam PF04055 Radical SAM superfamily 28 168 4.8E-15 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RPE_RS15910 089fd0e4d1ab4c5a22169d9daa0fc8cd 219 PANTHER PTHR30352 8 206 2.7E-32 T 23-04-2016 RPE_RS15910 089fd0e4d1ab4c5a22169d9daa0fc8cd 219 PANTHER PTHR30352:SF4 8 206 2.7E-32 T 23-04-2016 RPE_RS15910 089fd0e4d1ab4c5a22169d9daa0fc8cd 219 SUPERFAMILY SSF102114 30 211 2.75E-24 T 23-04-2016 RPE_RS15910 089fd0e4d1ab4c5a22169d9daa0fc8cd 219 TIGRFAM TIGR02495 NrdG2: anaerobic ribonucleoside-triphosphate reductase activating protein 9 195 1.8E-58 T 23-04-2016 IPR012840 Anaerobic ribonucleoside-triphosphate reductase activating protein RPE_RS15910 089fd0e4d1ab4c5a22169d9daa0fc8cd 219 Gene3D G3DSA:3.20.20.70 30 201 1.1E-21 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS15910 089fd0e4d1ab4c5a22169d9daa0fc8cd 219 Pfam PF13353 4Fe-4S single cluster domain 24 105 1.5E-7 T 23-04-2016 RPE_RS23655 a2ca209aa63661e695d143d47752662f 433 SUPERFAMILY SSF88659 106 167 1.1E-9 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS23655 a2ca209aa63661e695d143d47752662f 433 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 13 167 4.0E-14 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS23655 a2ca209aa63661e695d143d47752662f 433 SUPERFAMILY SSF48452 328 407 8.3E-6 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS23655 a2ca209aa63661e695d143d47752662f 433 PANTHER PTHR30173 19 382 2.3E-170 T 23-04-2016 RPE_RS23655 a2ca209aa63661e695d143d47752662f 433 Gene3D G3DSA:1.25.40.10 159 174 6.1E-5 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS23655 a2ca209aa63661e695d143d47752662f 433 Gene3D G3DSA:1.25.40.10 364 401 6.1E-5 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS23655 a2ca209aa63661e695d143d47752662f 433 Gene3D G3DSA:1.25.40.10 211 241 6.1E-5 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS23655 a2ca209aa63661e695d143d47752662f 433 Gene3D G3DSA:1.10.10.10 108 158 3.4E-11 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS23655 a2ca209aa63661e695d143d47752662f 433 Gene3D G3DSA:1.10.1740.10 13 96 6.7E-12 T 23-04-2016 RPE_RS23655 a2ca209aa63661e695d143d47752662f 433 Pfam PF08281 Sigma-70, region 4 114 164 4.6E-8 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS23655 a2ca209aa63661e695d143d47752662f 433 Pfam PF04542 Sigma-70 region 2 15 77 6.3E-11 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS23655 a2ca209aa63661e695d143d47752662f 433 PANTHER PTHR30173:SF7 19 382 2.3E-170 T 23-04-2016 RPE_RS23655 a2ca209aa63661e695d143d47752662f 433 SUPERFAMILY SSF88946 8 93 1.1E-12 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS21525 8ca2a41701a61b8ade64ca09897d3a22 390 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 125 137 - T 23-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RPE_RS21525 8ca2a41701a61b8ade64ca09897d3a22 390 Gene3D G3DSA:2.40.110.10 123 223 1.5E-29 T 23-04-2016 RPE_RS21525 8ca2a41701a61b8ade64ca09897d3a22 390 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 342 361 - T 23-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RPE_RS21525 8ca2a41701a61b8ade64ca09897d3a22 390 SUPERFAMILY SSF47203 235 388 3.06E-42 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS21525 8ca2a41701a61b8ade64ca09897d3a22 390 SUPERFAMILY SSF56645 8 247 1.05E-58 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RPE_RS21525 8ca2a41701a61b8ade64ca09897d3a22 390 Gene3D G3DSA:1.20.140.10 224 389 4.0E-55 T 23-04-2016 RPE_RS21525 8ca2a41701a61b8ade64ca09897d3a22 390 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 222 2.2E-23 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RPE_RS21525 8ca2a41701a61b8ade64ca09897d3a22 390 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 235 383 1.6E-33 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS21525 8ca2a41701a61b8ade64ca09897d3a22 390 PANTHER PTHR10909:SF285 9 390 3.3E-262 T 23-04-2016 RPE_RS21525 8ca2a41701a61b8ade64ca09897d3a22 390 PANTHER PTHR10909 9 390 3.3E-262 T 23-04-2016 RPE_RS21525 8ca2a41701a61b8ade64ca09897d3a22 390 Gene3D G3DSA:1.10.540.10 8 119 6.4E-28 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS21525 8ca2a41701a61b8ade64ca09897d3a22 390 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 9 118 7.3E-23 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS02530 d52423f1a0b38293045a2193781421f3 268 PANTHER PTHR30622:SF3 1 268 2.9E-116 T 23-04-2016 RPE_RS02530 d52423f1a0b38293045a2193781421f3 268 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 3 264 17.181 T 23-04-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 RPE_RS02530 d52423f1a0b38293045a2193781421f3 268 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 8 257 2.0E-68 T 23-04-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 RPE_RS02530 d52423f1a0b38293045a2193781421f3 268 Pfam PF02673 Bacitracin resistance protein BacA 8 258 9.8E-75 T 23-04-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 RPE_RS02530 d52423f1a0b38293045a2193781421f3 268 PANTHER PTHR30622 1 268 2.9E-116 T 23-04-2016 RPE_RS23570 b5b6952be34aab951e0479d3ffd097a6 109 SUPERFAMILY SSF143120 1 53 4.58E-7 T 23-04-2016 RPE_RS23570 b5b6952be34aab951e0479d3ffd097a6 109 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 4 31 7.9E-6 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RPE_RS23570 b5b6952be34aab951e0479d3ffd097a6 109 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 48 3.0E-10 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RPE_RS23570 b5b6952be34aab951e0479d3ffd097a6 109 Gene3D G3DSA:3.40.1620.10 1 31 6.1E-6 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RPE_RS16410 be677aec3b4b2f9845327b8a18d75c94 235 PANTHER PTHR10920 13 224 1.6E-115 T 23-04-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 RPE_RS16410 be677aec3b4b2f9845327b8a18d75c94 235 Pfam PF01728 FtsJ-like methyltransferase 44 222 1.5E-56 T 23-04-2016 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 RPE_RS16410 be677aec3b4b2f9845327b8a18d75c94 235 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 24 222 28.853 T 23-04-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 RPE_RS16410 be677aec3b4b2f9845327b8a18d75c94 235 PIRSF PIRSF005461 11 232 1.3E-72 T 23-04-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 RPE_RS16410 be677aec3b4b2f9845327b8a18d75c94 235 PANTHER PTHR10920:SF20 13 224 1.6E-115 T 23-04-2016 RPE_RS16410 be677aec3b4b2f9845327b8a18d75c94 235 SUPERFAMILY SSF53335 19 226 3.51E-40 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS16410 be677aec3b4b2f9845327b8a18d75c94 235 Gene3D G3DSA:3.40.50.150 10 225 7.0E-74 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS05920 96f130200a8154555273d6ac63afec1a 423 SUPERFAMILY SSF103088 303 418 8.24E-23 T 23-04-2016 IPR006665 OmpA-like domain RPE_RS05920 96f130200a8154555273d6ac63afec1a 423 Pfam PF00691 OmpA family 316 408 4.3E-12 T 23-04-2016 IPR006665 OmpA-like domain RPE_RS05920 96f130200a8154555273d6ac63afec1a 423 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 21 64 5.8E-17 T 23-04-2016 IPR025713 Motility protein B, N-terminal domain RPE_RS05920 96f130200a8154555273d6ac63afec1a 423 PANTHER PTHR30329:SF2 227 421 9.0E-75 T 23-04-2016 RPE_RS05920 96f130200a8154555273d6ac63afec1a 423 PANTHER PTHR30329 2 80 9.0E-75 T 23-04-2016 RPE_RS05920 96f130200a8154555273d6ac63afec1a 423 PANTHER PTHR30329:SF2 2 80 9.0E-75 T 23-04-2016 RPE_RS05920 96f130200a8154555273d6ac63afec1a 423 PANTHER PTHR30329 227 421 9.0E-75 T 23-04-2016 RPE_RS05920 96f130200a8154555273d6ac63afec1a 423 Gene3D G3DSA:3.30.1330.60 294 418 2.2E-20 T 23-04-2016 IPR006665 OmpA-like domain RPE_RS00370 db1c2e372c380a485fb9c6ba4e46a2d9 381 Gene3D G3DSA:1.20.140.10 220 381 2.1E-56 T 23-04-2016 RPE_RS00370 db1c2e372c380a485fb9c6ba4e46a2d9 381 PANTHER PTHR10909 10 381 3.0E-183 T 23-04-2016 RPE_RS00370 db1c2e372c380a485fb9c6ba4e46a2d9 381 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 125 219 7.6E-27 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RPE_RS00370 db1c2e372c380a485fb9c6ba4e46a2d9 381 PANTHER PTHR10909:SF190 10 381 3.0E-183 T 23-04-2016 RPE_RS00370 db1c2e372c380a485fb9c6ba4e46a2d9 381 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 340 359 - T 23-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RPE_RS00370 db1c2e372c380a485fb9c6ba4e46a2d9 381 Gene3D G3DSA:2.40.110.10 124 219 6.7E-37 T 23-04-2016 RPE_RS00370 db1c2e372c380a485fb9c6ba4e46a2d9 381 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 233 381 1.2E-41 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS00370 db1c2e372c380a485fb9c6ba4e46a2d9 381 SUPERFAMILY SSF47203 231 381 3.06E-50 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS00370 db1c2e372c380a485fb9c6ba4e46a2d9 381 SUPERFAMILY SSF56645 4 245 6.15E-77 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RPE_RS00370 db1c2e372c380a485fb9c6ba4e46a2d9 381 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 9 121 1.2E-29 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS00370 db1c2e372c380a485fb9c6ba4e46a2d9 381 Gene3D G3DSA:1.10.540.10 5 123 1.1E-32 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS07000 ec3883da259d5a0fd39282a87fb4e5ad 392 SUPERFAMILY SSF53822 23 388 4.97E-71 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RPE_RS07000 ec3883da259d5a0fd39282a87fb4e5ad 392 Pfam PF13458 Periplasmic binding protein 23 363 3.4E-54 T 23-04-2016 IPR028081 Leucine-binding protein domain RPE_RS07000 ec3883da259d5a0fd39282a87fb4e5ad 392 PANTHER PTHR30483:SF9 1 388 1.6E-157 T 23-04-2016 RPE_RS07000 ec3883da259d5a0fd39282a87fb4e5ad 392 Gene3D G3DSA:3.40.50.2300 159 301 7.6E-11 T 23-04-2016 RPE_RS07000 ec3883da259d5a0fd39282a87fb4e5ad 392 Gene3D G3DSA:3.40.50.2300 18 148 9.1E-41 T 23-04-2016 RPE_RS07000 ec3883da259d5a0fd39282a87fb4e5ad 392 Gene3D G3DSA:3.40.50.2300 302 353 9.1E-41 T 23-04-2016 RPE_RS07000 ec3883da259d5a0fd39282a87fb4e5ad 392 PANTHER PTHR30483 1 388 1.6E-157 T 23-04-2016 RPE_RS17425 c13b1b4dd7d5d75ca8de382c1571eb3f 213 Gene3D G3DSA:3.30.1150.10 105 188 9.2E-6 T 23-04-2016 RPE_RS17425 c13b1b4dd7d5d75ca8de382c1571eb3f 213 SMART SM00965 45 96 5.4E-9 T 23-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 RPE_RS17425 c13b1b4dd7d5d75ca8de382c1571eb3f 213 Pfam PF13103 TonB C terminal 109 185 1.4E-6 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 RPE_RS17425 c13b1b4dd7d5d75ca8de382c1571eb3f 213 SUPERFAMILY SSF74653 104 187 5.1E-10 T 23-04-2016 RPE_RS23305 c87c20621eae89346f4a7165fe57e3f8 441 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 247 425 6.5E-32 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS23305 c87c20621eae89346f4a7165fe57e3f8 441 PANTHER PTHR32089 37 112 3.4E-91 T 23-04-2016 RPE_RS23305 c87c20621eae89346f4a7165fe57e3f8 441 PANTHER PTHR32089 170 431 3.4E-91 T 23-04-2016 RPE_RS23305 c87c20621eae89346f4a7165fe57e3f8 441 PANTHER PTHR32089:SF40 37 112 3.4E-91 T 23-04-2016 RPE_RS23305 c87c20621eae89346f4a7165fe57e3f8 441 PANTHER PTHR32089:SF40 170 431 3.4E-91 T 23-04-2016 RPE_RS23305 c87c20621eae89346f4a7165fe57e3f8 441 SMART SM00283 174 428 1.4E-45 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS23305 c87c20621eae89346f4a7165fe57e3f8 441 SUPERFAMILY SSF58104 87 111 6.54E-55 T 23-04-2016 RPE_RS23305 c87c20621eae89346f4a7165fe57e3f8 441 SUPERFAMILY SSF58104 180 427 6.54E-55 T 23-04-2016 RPE_RS23305 c87c20621eae89346f4a7165fe57e3f8 441 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 301 330 1.2E-19 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS23305 c87c20621eae89346f4a7165fe57e3f8 441 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 272 299 1.2E-19 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS23305 c87c20621eae89346f4a7165fe57e3f8 441 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 195 224 1.2E-19 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS23305 c87c20621eae89346f4a7165fe57e3f8 441 Gene3D G3DSA:1.10.287.950 193 396 1.9E-45 T 23-04-2016 RPE_RS20800 1d908916d9160b3b43ec12d639cc5240 390 PIRSF PIRSF000525 13 383 2.5E-50 T 23-04-2016 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|UniPathway: UPA00135|UniPathway: UPA00244 RPE_RS20800 1d908916d9160b3b43ec12d639cc5240 390 Gene3D G3DSA:3.40.640.10 24 264 3.2E-45 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS20800 1d908916d9160b3b43ec12d639cc5240 390 TIGRFAM TIGR01365 serC_2: phosphoserine aminotransferase 9 381 6.5E-208 T 23-04-2016 IPR006271 Phosphoserine aminotransferase, Methanosarcina-type GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|UniPathway: UPA00135|UniPathway: UPA00244 RPE_RS20800 1d908916d9160b3b43ec12d639cc5240 390 PANTHER PTHR21152:SF20 5 386 8.9E-181 T 23-04-2016 RPE_RS20800 1d908916d9160b3b43ec12d639cc5240 390 SUPERFAMILY SSF53383 10 379 6.61E-72 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS20800 1d908916d9160b3b43ec12d639cc5240 390 PANTHER PTHR21152 5 386 8.9E-181 T 23-04-2016 RPE_RS06635 4803c68ec4894714fbf7f1ddc5c6ad08 296 PRINTS PR00111 Alpha/beta hydrolase fold signature 233 247 2.2E-5 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS06635 4803c68ec4894714fbf7f1ddc5c6ad08 296 PRINTS PR00111 Alpha/beta hydrolase fold signature 108 121 2.2E-5 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS06635 4803c68ec4894714fbf7f1ddc5c6ad08 296 PRINTS PR00111 Alpha/beta hydrolase fold signature 63 78 2.2E-5 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS06635 4803c68ec4894714fbf7f1ddc5c6ad08 296 Pfam PF12697 Alpha/beta hydrolase family 40 280 6.3E-23 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS06635 4803c68ec4894714fbf7f1ddc5c6ad08 296 PANTHER PTHR10992 21 288 3.4E-38 T 23-04-2016 RPE_RS06635 4803c68ec4894714fbf7f1ddc5c6ad08 296 PRINTS PR00412 Epoxide hydrolase signature 44 62 5.1E-5 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RPE_RS06635 4803c68ec4894714fbf7f1ddc5c6ad08 296 PRINTS PR00412 Epoxide hydrolase signature 108 121 5.1E-5 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RPE_RS06635 4803c68ec4894714fbf7f1ddc5c6ad08 296 PRINTS PR00412 Epoxide hydrolase signature 263 285 5.1E-5 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RPE_RS06635 4803c68ec4894714fbf7f1ddc5c6ad08 296 TIGRFAM TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein 12 285 1.8E-98 T 23-04-2016 IPR017497 Putative magnesium chelatase accessory protein KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00671 RPE_RS06635 4803c68ec4894714fbf7f1ddc5c6ad08 296 Gene3D G3DSA:3.40.50.1820 18 283 1.6E-50 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS06635 4803c68ec4894714fbf7f1ddc5c6ad08 296 SUPERFAMILY SSF53474 16 283 4.19E-52 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS11315 149baa79678d7ede1639639a27925fee 671 Gene3D G3DSA:2.40.50.100 587 657 2.3E-21 T 23-04-2016 RPE_RS11315 149baa79678d7ede1639639a27925fee 671 Pfam PF02785 Biotin carboxylase C-terminal domain 345 449 4.4E-31 T 23-04-2016 IPR005482 Biotin carboxylase, C-terminal RPE_RS11315 149baa79678d7ede1639639a27925fee 671 SMART SM00878 345 449 2.1E-48 T 23-04-2016 IPR005482 Biotin carboxylase, C-terminal RPE_RS11315 149baa79678d7ede1639639a27925fee 671 SUPERFAMILY SSF51230 582 657 6.41E-18 T 23-04-2016 IPR011053 Single hybrid motif RPE_RS11315 149baa79678d7ede1639639a27925fee 671 Pfam PF00289 Biotin carboxylase, N-terminal domain 11 119 2.2E-44 T 23-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain RPE_RS11315 149baa79678d7ede1639639a27925fee 671 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 125 331 5.4E-75 T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RPE_RS11315 149baa79678d7ede1639639a27925fee 671 Pfam PF00364 Biotin-requiring enzyme 594 656 5.2E-14 T 23-04-2016 IPR000089 Biotin/lipoyl attachment RPE_RS11315 149baa79678d7ede1639639a27925fee 671 SUPERFAMILY SSF56059 92 349 3.54E-66 T 23-04-2016 RPE_RS11315 149baa79678d7ede1639639a27925fee 671 SUPERFAMILY SSF51246 340 454 2.83E-34 T 23-04-2016 IPR011054 Rudiment single hybrid motif RPE_RS11315 149baa79678d7ede1639639a27925fee 671 PANTHER PTHR18866 9 657 0.0 T 23-04-2016 RPE_RS11315 149baa79678d7ede1639639a27925fee 671 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 295 302 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RPE_RS11315 149baa79678d7ede1639639a27925fee 671 Gene3D G3DSA:3.40.50.20 11 137 2.0E-51 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RPE_RS11315 149baa79678d7ede1639639a27925fee 671 SUPERFAMILY SSF52440 9 122 3.31E-48 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RPE_RS11315 149baa79678d7ede1639639a27925fee 671 Gene3D G3DSA:3.30.470.20 214 454 3.2E-95 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RPE_RS11315 149baa79678d7ede1639639a27925fee 671 Gene3D G3DSA:3.30.1490.20 138 210 2.8E-27 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RPE_RS10215 64a864c451cc48af3a8340845b455763 424 Gene3D G3DSA:2.40.440.10 238 373 7.5E-34 T 23-04-2016 RPE_RS10215 64a864c451cc48af3a8340845b455763 424 PANTHER PTHR30582:SF1 183 379 6.5E-74 T 23-04-2016 RPE_RS10215 64a864c451cc48af3a8340845b455763 424 PANTHER PTHR30582:SF1 81 154 6.5E-74 T 23-04-2016 RPE_RS10215 64a864c451cc48af3a8340845b455763 424 Pfam PF03734 L,D-transpeptidase catalytic domain 245 372 2.3E-16 T 23-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 RPE_RS10215 64a864c451cc48af3a8340845b455763 424 PANTHER PTHR30582 183 379 6.5E-74 T 23-04-2016 RPE_RS10215 64a864c451cc48af3a8340845b455763 424 PANTHER PTHR30582 81 154 6.5E-74 T 23-04-2016 RPE_RS10215 64a864c451cc48af3a8340845b455763 424 SUPERFAMILY SSF141523 239 373 1.31E-31 T 23-04-2016 RPE_RS24795 d0c27b4c458ba42fc761260aedf24600 684 PANTHER PTHR22916:SF12 6 476 2.7E-36 T 23-04-2016 RPE_RS24795 d0c27b4c458ba42fc761260aedf24600 684 Pfam PF13578 Methyltransferase domain 510 616 1.9E-13 T 23-04-2016 RPE_RS24795 d0c27b4c458ba42fc761260aedf24600 684 PANTHER PTHR22916 6 476 2.7E-36 T 23-04-2016 RPE_RS24795 d0c27b4c458ba42fc761260aedf24600 684 SUPERFAMILY SSF53335 491 618 6.51E-17 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS24795 d0c27b4c458ba42fc761260aedf24600 684 Gene3D G3DSA:3.40.50.150 490 616 7.5E-19 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS24795 d0c27b4c458ba42fc761260aedf24600 684 Gene3D G3DSA:3.90.550.10 12 222 4.8E-40 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS24795 d0c27b4c458ba42fc761260aedf24600 684 Pfam PF00535 Glycosyl transferase family 2 16 146 9.3E-28 T 23-04-2016 IPR001173 Glycosyltransferase 2-like RPE_RS24795 d0c27b4c458ba42fc761260aedf24600 684 SUPERFAMILY SSF53448 12 229 1.13E-40 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS09335 e9d515ed29750098041008483e130402 623 PANTHER PTHR23408:SF13 217 601 2.6E-70 T 23-04-2016 RPE_RS09335 e9d515ed29750098041008483e130402 623 Gene3D G3DSA:3.40.50.280 487 621 7.1E-53 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RPE_RS09335 e9d515ed29750098041008483e130402 623 PANTHER PTHR23408 217 601 2.6E-70 T 23-04-2016 RPE_RS09335 e9d515ed29750098041008483e130402 623 SUPERFAMILY SSF51703 9 524 2.01E-134 T 23-04-2016 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0008152|GO:0031419 RPE_RS09335 e9d515ed29750098041008483e130402 623 Pfam PF01642 Methylmalonyl-CoA mutase 64 530 5.1E-94 T 23-04-2016 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0008152|GO:0016866|GO:0031419 RPE_RS09335 e9d515ed29750098041008483e130402 623 Gene3D G3DSA:3.20.20.240 40 481 5.5E-107 T 23-04-2016 IPR014348 Cobalamin (vitamin B12)-dependent enzyme, catalytic subdomain GO:0008152|GO:0016866|GO:0031419 RPE_RS09335 e9d515ed29750098041008483e130402 623 Gene3D G3DSA:1.10.196.20 8 38 1.7E-7 T 23-04-2016 IPR024067 Methylmalonyl-CoA mutase small subunit, N-terminal KEGG: 00280+5.4.99.2|KEGG: 00630+5.4.99.2|KEGG: 00640+5.4.99.2|KEGG: 00720+5.4.99.2|MetaCyc: PWY-5743|MetaCyc: PWY-5789|MetaCyc: PWY-6728|MetaCyc: PWY-7384|UniPathway: UPA00945 RPE_RS09335 e9d515ed29750098041008483e130402 623 SUPERFAMILY SSF52242 462 620 2.59E-42 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RPE_RS13320 fd024a64cc9e39c41664bc86e42d6a9c 326 Pfam PF16220 Domain of unknown function (DUF4880) 14 55 4.2E-7 T 23-04-2016 IPR032623 FecR, N-terminal RPE_RS13320 fd024a64cc9e39c41664bc86e42d6a9c 326 Pfam PF16344 Domain of unknown function (DUF4974) 230 309 4.0E-7 T 23-04-2016 IPR032508 Protein FecR, C-terminal RPE_RS13320 fd024a64cc9e39c41664bc86e42d6a9c 326 PANTHER PTHR30273 6 325 1.2E-39 T 23-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component RPE_RS13320 fd024a64cc9e39c41664bc86e42d6a9c 326 Pfam PF04773 FecR protein 124 215 1.7E-13 T 23-04-2016 IPR006860 FecR protein RPE_RS13320 fd024a64cc9e39c41664bc86e42d6a9c 326 PIRSF PIRSF018266 3 325 1.7E-63 T 23-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component RPE_RS00470 5174269a7f5307aedbbe0223cbe7b383 274 SUPERFAMILY SSF55920 22 268 1.7E-84 T 23-04-2016 IPR000994 Peptidase M24, structural domain RPE_RS00470 5174269a7f5307aedbbe0223cbe7b383 274 PRINTS PR00599 Methionine aminopeptidase-1 signature 174 186 3.5E-21 T 23-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase RPE_RS00470 5174269a7f5307aedbbe0223cbe7b383 274 PRINTS PR00599 Methionine aminopeptidase-1 signature 82 95 3.5E-21 T 23-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase RPE_RS00470 5174269a7f5307aedbbe0223cbe7b383 274 PRINTS PR00599 Methionine aminopeptidase-1 signature 104 120 3.5E-21 T 23-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase RPE_RS00470 5174269a7f5307aedbbe0223cbe7b383 274 PRINTS PR00599 Methionine aminopeptidase-1 signature 205 217 3.5E-21 T 23-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase RPE_RS00470 5174269a7f5307aedbbe0223cbe7b383 274 PANTHER PTHR10804 3 272 3.3E-124 T 23-04-2016 RPE_RS00470 5174269a7f5307aedbbe0223cbe7b383 274 Gene3D G3DSA:3.90.230.10 20 267 1.8E-88 T 23-04-2016 IPR000994 Peptidase M24, structural domain RPE_RS00470 5174269a7f5307aedbbe0223cbe7b383 274 PANTHER PTHR10804:SF82 3 272 3.3E-124 T 23-04-2016 RPE_RS00470 5174269a7f5307aedbbe0223cbe7b383 274 Pfam PF00557 Metallopeptidase family M24 27 254 7.0E-50 T 23-04-2016 IPR000994 Peptidase M24, structural domain RPE_RS00470 5174269a7f5307aedbbe0223cbe7b383 274 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 19 262 1.4E-84 T 23-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 RPE_RS00470 5174269a7f5307aedbbe0223cbe7b383 274 Hamap MF_01974 Methionine aminopeptidase [map]. 17 263 38.246 T 23-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 RPE_RS00470 5174269a7f5307aedbbe0223cbe7b383 274 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 180 198 - T 23-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 RPE_RS00825 dc53b0404b31d136e67b122eb8cbc639 255 Pfam PF00753 Metallo-beta-lactamase superfamily 30 171 7.2E-17 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS00825 dc53b0404b31d136e67b122eb8cbc639 255 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 172 254 1.8E-25 T 23-04-2016 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386|UniPathway: UPA00619 RPE_RS00825 dc53b0404b31d136e67b122eb8cbc639 255 SMART SM00849 13 171 1.0E-30 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS00825 dc53b0404b31d136e67b122eb8cbc639 255 SUPERFAMILY SSF56281 5 254 1.29E-67 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS00825 dc53b0404b31d136e67b122eb8cbc639 255 PIRSF PIRSF005457 1 255 2.0E-97 T 23-04-2016 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386|UniPathway: UPA00619 RPE_RS00825 dc53b0404b31d136e67b122eb8cbc639 255 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 3 255 42.273 T 23-04-2016 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386|UniPathway: UPA00619 RPE_RS00825 dc53b0404b31d136e67b122eb8cbc639 255 Gene3D G3DSA:3.60.15.10 5 254 8.1E-85 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS00825 dc53b0404b31d136e67b122eb8cbc639 255 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 7 254 3.5E-97 T 23-04-2016 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386|UniPathway: UPA00619 RPE_RS00825 dc53b0404b31d136e67b122eb8cbc639 255 PANTHER PTHR11935:SF7 4 254 3.9E-92 T 23-04-2016 RPE_RS00825 dc53b0404b31d136e67b122eb8cbc639 255 PANTHER PTHR11935 4 254 3.9E-92 T 23-04-2016 RPE_RS17210 95e4d8cef36f64502f575f4b20e39305 146 SUPERFAMILY SSF88723 2 131 5.89E-26 T 23-04-2016 IPR029060 PIN domain-like RPE_RS17210 95e4d8cef36f64502f575f4b20e39305 146 Pfam PF01850 PIN domain 2 124 1.3E-11 T 23-04-2016 IPR002716 PIN domain RPE_RS17210 95e4d8cef36f64502f575f4b20e39305 146 Gene3D G3DSA:3.40.50.1010 2 132 4.6E-18 T 23-04-2016 IPR029060 PIN domain-like RPE_RS17210 95e4d8cef36f64502f575f4b20e39305 146 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 2 138 11.848 T 23-04-2016 IPR022907 VapC family GO:0004540 RPE_RS17210 95e4d8cef36f64502f575f4b20e39305 146 PANTHER PTHR33653:SF1 2 139 4.8E-19 T 23-04-2016 RPE_RS17210 95e4d8cef36f64502f575f4b20e39305 146 PANTHER PTHR33653 2 139 4.8E-19 T 23-04-2016 RPE_RS12810 5566e9149411011807fcd1c5479cdb8f 307 SUPERFAMILY SSF54713 56 143 3.43E-21 T 23-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RPE_RS12810 5566e9149411011807fcd1c5479cdb8f 307 Gene3D G3DSA:3.30.479.20 149 196 1.6E-23 T 23-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RPE_RS12810 5566e9149411011807fcd1c5479cdb8f 307 Gene3D G3DSA:3.30.479.20 245 286 1.6E-23 T 23-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RPE_RS12810 5566e9149411011807fcd1c5479cdb8f 307 Gene3D G3DSA:3.30.479.20 57 147 6.4E-16 T 23-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RPE_RS12810 5566e9149411011807fcd1c5479cdb8f 307 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 304 4.4E-90 T 23-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 RPE_RS12810 5566e9149411011807fcd1c5479cdb8f 307 SUPERFAMILY SSF54713 148 304 1.83E-43 T 23-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RPE_RS12810 5566e9149411011807fcd1c5479cdb8f 307 ProSitePatterns PS01127 Elongation factor Ts signature 2. 75 85 - T 23-04-2016 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 RPE_RS12810 5566e9149411011807fcd1c5479cdb8f 307 Hamap MF_00050 Elongation factor Ts [tsf]. 1 304 77.111 T 23-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 RPE_RS12810 5566e9149411011807fcd1c5479cdb8f 307 ProSitePatterns PS01126 Elongation factor Ts signature 1. 12 27 - T 23-04-2016 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 RPE_RS12810 5566e9149411011807fcd1c5479cdb8f 307 SUPERFAMILY SSF46934 4 55 2.22E-19 T 23-04-2016 IPR009060 UBA-like GO:0005515 RPE_RS12810 5566e9149411011807fcd1c5479cdb8f 307 Gene3D G3DSA:1.10.8.10 3 55 1.6E-27 T 23-04-2016 RPE_RS12810 5566e9149411011807fcd1c5479cdb8f 307 Gene3D G3DSA:1.10.286.20 203 244 4.8E-13 T 23-04-2016 RPE_RS12810 5566e9149411011807fcd1c5479cdb8f 307 PANTHER PTHR11741 1 307 3.7E-137 T 23-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 RPE_RS12810 5566e9149411011807fcd1c5479cdb8f 307 Pfam PF00889 Elongation factor TS 71 287 7.6E-67 T 23-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RPE_RS01930 d6b5d04bc127c591df81a2215097107d 231 PANTHER PTHR31760 14 197 8.2E-41 T 23-04-2016 RPE_RS01930 d6b5d04bc127c591df81a2215097107d 231 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 24 214 23.615 T 23-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RPE_RS01930 d6b5d04bc127c591df81a2215097107d 231 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 36 193 1.7E-31 T 23-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RPE_RS01930 d6b5d04bc127c591df81a2215097107d 231 SUPERFAMILY SSF53335 22 199 3.94E-30 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS01930 d6b5d04bc127c591df81a2215097107d 231 Gene3D G3DSA:3.40.50.150 16 220 2.4E-50 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS01930 d6b5d04bc127c591df81a2215097107d 231 Pfam PF02527 rRNA small subunit methyltransferase G 33 198 1.8E-38 T 23-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RPE_RS01930 d6b5d04bc127c591df81a2215097107d 231 PIRSF PIRSF003078 12 220 2.1E-51 T 23-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RPE_RS01930 d6b5d04bc127c591df81a2215097107d 231 PANTHER PTHR31760:SF0 14 197 8.2E-41 T 23-04-2016 RPE_RS10205 048a3bf345700b1262333c9a7b5f0dd7 285 Pfam PF00581 Rhodanese-like domain 157 272 2.8E-12 T 23-04-2016 IPR001763 Rhodanese-like domain RPE_RS10205 048a3bf345700b1262333c9a7b5f0dd7 285 Pfam PF00581 Rhodanese-like domain 10 129 3.8E-17 T 23-04-2016 IPR001763 Rhodanese-like domain RPE_RS10205 048a3bf345700b1262333c9a7b5f0dd7 285 SUPERFAMILY SSF52821 5 154 5.24E-45 T 23-04-2016 IPR001763 Rhodanese-like domain RPE_RS10205 048a3bf345700b1262333c9a7b5f0dd7 285 PANTHER PTHR11364 5 284 1.1E-121 T 23-04-2016 RPE_RS10205 048a3bf345700b1262333c9a7b5f0dd7 285 Gene3D G3DSA:3.40.250.10 5 151 7.3E-50 T 23-04-2016 IPR001763 Rhodanese-like domain RPE_RS10205 048a3bf345700b1262333c9a7b5f0dd7 285 ProSitePatterns PS00380 Rhodanese signature 1. 43 54 - T 23-04-2016 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 RPE_RS10205 048a3bf345700b1262333c9a7b5f0dd7 285 SUPERFAMILY SSF52821 159 284 5.89E-35 T 23-04-2016 IPR001763 Rhodanese-like domain RPE_RS10205 048a3bf345700b1262333c9a7b5f0dd7 285 SMART SM00450 9 133 1.0E-22 T 23-04-2016 IPR001763 Rhodanese-like domain RPE_RS10205 048a3bf345700b1262333c9a7b5f0dd7 285 SMART SM00450 156 278 4.3E-17 T 23-04-2016 IPR001763 Rhodanese-like domain RPE_RS10205 048a3bf345700b1262333c9a7b5f0dd7 285 Gene3D G3DSA:3.40.250.10 154 284 4.2E-38 T 23-04-2016 IPR001763 Rhodanese-like domain RPE_RS11930 525f98434e2f68319299769e37b6372f 291 PANTHER PTHR24320 7 284 2.2E-106 T 23-04-2016 RPE_RS11930 525f98434e2f68319299769e37b6372f 291 SUPERFAMILY SSF51735 8 261 1.14E-57 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS11930 525f98434e2f68319299769e37b6372f 291 Gene3D G3DSA:3.40.50.720 7 280 7.3E-62 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS11930 525f98434e2f68319299769e37b6372f 291 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 7.0E-16 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11930 525f98434e2f68319299769e37b6372f 291 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 7.0E-16 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11930 525f98434e2f68319299769e37b6372f 291 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 189 206 7.0E-16 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11930 525f98434e2f68319299769e37b6372f 291 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 187 7.0E-16 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11930 525f98434e2f68319299769e37b6372f 291 Pfam PF00106 short chain dehydrogenase 10 206 9.3E-37 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS13075 4da9015fbd54feb627553f9fce31956b 427 ProSitePatterns PS00164 Enolase signature. 334 347 - T 23-04-2016 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS13075 4da9015fbd54feb627553f9fce31956b 427 SMART SM01193 4 134 3.7E-93 T 23-04-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 RPE_RS13075 4da9015fbd54feb627553f9fce31956b 427 PANTHER PTHR11902 1 420 1.0E-248 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS13075 4da9015fbd54feb627553f9fce31956b 427 SUPERFAMILY SSF51604 139 423 2.62E-127 T 23-04-2016 IPR029065 Enolase C-terminal domain-like RPE_RS13075 4da9015fbd54feb627553f9fce31956b 427 PIRSF PIRSF001400 1 425 2.7E-188 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS13075 4da9015fbd54feb627553f9fce31956b 427 Gene3D G3DSA:3.30.390.10 4 125 3.3E-55 T 23-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RPE_RS13075 4da9015fbd54feb627553f9fce31956b 427 SUPERFAMILY SSF54826 3 137 3.37E-56 T 23-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RPE_RS13075 4da9015fbd54feb627553f9fce31956b 427 Hamap MF_00318 Enolase [eno]. 2 411 43.689 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS13075 4da9015fbd54feb627553f9fce31956b 427 SMART SM01192 139 425 7.2E-218 T 23-04-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 RPE_RS13075 4da9015fbd54feb627553f9fce31956b 427 Gene3D G3DSA:3.20.20.120 128 424 5.1E-133 T 23-04-2016 IPR029065 Enolase C-terminal domain-like RPE_RS13075 4da9015fbd54feb627553f9fce31956b 427 PRINTS PR00148 Enolase signature 334 348 2.8E-48 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS13075 4da9015fbd54feb627553f9fce31956b 427 PRINTS PR00148 Enolase signature 107 123 2.8E-48 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS13075 4da9015fbd54feb627553f9fce31956b 427 PRINTS PR00148 Enolase signature 161 174 2.8E-48 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS13075 4da9015fbd54feb627553f9fce31956b 427 PRINTS PR00148 Enolase signature 311 322 2.8E-48 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS13075 4da9015fbd54feb627553f9fce31956b 427 PRINTS PR00148 Enolase signature 37 51 2.8E-48 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS13075 4da9015fbd54feb627553f9fce31956b 427 PRINTS PR00148 Enolase signature 363 380 2.8E-48 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS13075 4da9015fbd54feb627553f9fce31956b 427 Pfam PF03952 Enolase, N-terminal domain 4 134 7.7E-59 T 23-04-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 RPE_RS13075 4da9015fbd54feb627553f9fce31956b 427 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 423 4.4E-204 T 23-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS13075 4da9015fbd54feb627553f9fce31956b 427 Pfam PF00113 Enolase, C-terminal TIM barrel domain 141 424 2.0E-128 T 23-04-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 RPE_RS00395 83165c867cf6f580e2c8e7b5a9adf3fe 585 PANTHER PTHR34847 166 581 7.1E-86 T 23-04-2016 RPE_RS00395 83165c867cf6f580e2c8e7b5a9adf3fe 585 PANTHER PTHR34847 108 142 7.1E-86 T 23-04-2016 RPE_RS00395 83165c867cf6f580e2c8e7b5a9adf3fe 585 Pfam PF02543 Carbamoyltransferase N-terminus 103 341 2.9E-38 T 23-04-2016 IPR003696 Carbamoyltransferase GO:0003824|GO:0009058 RPE_RS00395 83165c867cf6f580e2c8e7b5a9adf3fe 585 Pfam PF02543 Carbamoyltransferase N-terminus 3 75 5.7E-7 T 23-04-2016 IPR003696 Carbamoyltransferase GO:0003824|GO:0009058 RPE_RS00395 83165c867cf6f580e2c8e7b5a9adf3fe 585 SUPERFAMILY SSF53067 1 202 5.18E-18 T 23-04-2016 RPE_RS00395 83165c867cf6f580e2c8e7b5a9adf3fe 585 SUPERFAMILY SSF53067 249 343 5.18E-18 T 23-04-2016 RPE_RS00395 83165c867cf6f580e2c8e7b5a9adf3fe 585 Pfam PF16861 Carbamoyltransferase C-terminus 398 564 3.9E-64 T 23-04-2016 IPR031730 Carbamoyltransferase, C-terminal RPE_RS00395 83165c867cf6f580e2c8e7b5a9adf3fe 585 Gene3D G3DSA:3.30.420.40 1 136 2.9E-4 T 23-04-2016 RPE_RS21780 c1cc8ac98eda56e45439222b260af850 404 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 147 159 - T 23-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RPE_RS21780 c1cc8ac98eda56e45439222b260af850 404 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 253 397 1.1E-27 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS21780 c1cc8ac98eda56e45439222b260af850 404 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 145 238 6.8E-21 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RPE_RS21780 c1cc8ac98eda56e45439222b260af850 404 SUPERFAMILY SSF56645 16 250 8.77E-78 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RPE_RS21780 c1cc8ac98eda56e45439222b260af850 404 PANTHER PTHR10909:SF307 1 403 2.5E-266 T 23-04-2016 RPE_RS21780 c1cc8ac98eda56e45439222b260af850 404 Gene3D G3DSA:2.40.110.10 144 238 3.1E-33 T 23-04-2016 RPE_RS21780 c1cc8ac98eda56e45439222b260af850 404 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 356 375 - T 23-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RPE_RS21780 c1cc8ac98eda56e45439222b260af850 404 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 29 141 6.4E-34 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS21780 c1cc8ac98eda56e45439222b260af850 404 Gene3D G3DSA:1.20.140.10 239 401 9.9E-41 T 23-04-2016 RPE_RS21780 c1cc8ac98eda56e45439222b260af850 404 PANTHER PTHR10909 1 403 2.5E-266 T 23-04-2016 RPE_RS21780 c1cc8ac98eda56e45439222b260af850 404 SUPERFAMILY SSF47203 254 401 1.93E-41 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS21780 c1cc8ac98eda56e45439222b260af850 404 Gene3D G3DSA:1.10.540.10 14 143 2.3E-40 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS20565 f69fe956b31854155756d041b68bd1df 41 ProSitePatterns PS00828 Ribosomal protein L36 signature. 14 40 - T 23-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS20565 f69fe956b31854155756d041b68bd1df 41 Pfam PF00444 Ribosomal protein L36 1 41 9.1E-14 T 23-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS20565 f69fe956b31854155756d041b68bd1df 41 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 41 1.1E-5 T 23-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS20565 f69fe956b31854155756d041b68bd1df 41 PANTHER PTHR18804:SF11 1 41 2.1E-13 T 23-04-2016 RPE_RS20565 f69fe956b31854155756d041b68bd1df 41 SUPERFAMILY SSF57840 1 41 2.09E-11 T 23-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS20565 f69fe956b31854155756d041b68bd1df 41 PANTHER PTHR18804 1 41 2.1E-13 T 23-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS20565 f69fe956b31854155756d041b68bd1df 41 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 41 15.354 T 23-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS16610 8426512ee49104fbea8d091938a659bf 287 Pfam PF10137 Predicted nucleotide-binding protein containing TIR-like domain 113 242 2.1E-24 T 23-04-2016 IPR019302 Nucleotide-binding protein, predicted, TIR-like domain RPE_RS22000 7e78f78a7ed12a69a224e1a44b8c1e6b 293 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 24 291 1.2E-96 T 23-04-2016 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|UniPathway: UPA00253 RPE_RS22000 7e78f78a7ed12a69a224e1a44b8c1e6b 293 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 35 122 6.6E-25 T 23-04-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 RPE_RS22000 7e78f78a7ed12a69a224e1a44b8c1e6b 293 SUPERFAMILY SSF54675 16 123 7.85E-31 T 23-04-2016 RPE_RS22000 7e78f78a7ed12a69a224e1a44b8c1e6b 293 Gene3D G3DSA:3.20.20.70 145 281 3.8E-59 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS22000 7e78f78a7ed12a69a224e1a44b8c1e6b 293 PIRSF PIRSF006250 17 293 3.7E-93 T 23-04-2016 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD RPE_RS22000 7e78f78a7ed12a69a224e1a44b8c1e6b 293 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 124 290 1.1E-59 T 23-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 RPE_RS22000 7e78f78a7ed12a69a224e1a44b8c1e6b 293 PANTHER PTHR32179 1 293 7.6E-123 T 23-04-2016 RPE_RS22000 7e78f78a7ed12a69a224e1a44b8c1e6b 293 Gene3D G3DSA:3.90.1170.20 15 144 1.6E-47 T 23-04-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 RPE_RS22000 7e78f78a7ed12a69a224e1a44b8c1e6b 293 SUPERFAMILY SSF51690 124 291 3.34E-57 T 23-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 RPE_RS12560 1a2b36c8474aeade9659dc9b5fc3701c 469 SUPERFAMILY SSF54368 3 102 1.44E-37 T 23-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RPE_RS12560 1a2b36c8474aeade9659dc9b5fc3701c 469 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 259 274 - T 23-04-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RPE_RS12560 1a2b36c8474aeade9659dc9b5fc3701c 469 Gene3D G3DSA:3.10.20.70 3 106 2.3E-41 T 23-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RPE_RS12560 1a2b36c8474aeade9659dc9b5fc3701c 469 SUPERFAMILY SSF55931 104 468 2.45E-137 T 23-04-2016 RPE_RS12560 1a2b36c8474aeade9659dc9b5fc3701c 469 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 6 468 7.8E-203 T 23-04-2016 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RPE_RS12560 1a2b36c8474aeade9659dc9b5fc3701c 469 Pfam PF00120 Glutamine synthetase, catalytic domain 104 466 3.3E-140 T 23-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RPE_RS12560 1a2b36c8474aeade9659dc9b5fc3701c 469 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 386 398 - T 23-04-2016 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RPE_RS12560 1a2b36c8474aeade9659dc9b5fc3701c 469 PANTHER PTHR20852 161 469 2.9E-265 T 23-04-2016 RPE_RS12560 1a2b36c8474aeade9659dc9b5fc3701c 469 PANTHER PTHR20852 3 139 2.9E-265 T 23-04-2016 RPE_RS12560 1a2b36c8474aeade9659dc9b5fc3701c 469 ProSitePatterns PS00180 Glutamine synthetase signature 1. 51 69 - T 23-04-2016 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RPE_RS12560 1a2b36c8474aeade9659dc9b5fc3701c 469 PANTHER PTHR20852:SF15 161 469 2.9E-265 T 23-04-2016 RPE_RS12560 1a2b36c8474aeade9659dc9b5fc3701c 469 PANTHER PTHR20852:SF15 3 139 2.9E-265 T 23-04-2016 RPE_RS12560 1a2b36c8474aeade9659dc9b5fc3701c 469 Gene3D G3DSA:3.30.590.10 107 455 3.4E-136 T 23-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 RPE_RS12560 1a2b36c8474aeade9659dc9b5fc3701c 469 SMART SM01230 103 379 3.3E-146 T 23-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RPE_RS12560 1a2b36c8474aeade9659dc9b5fc3701c 469 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 15 96 8.3E-31 T 23-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RPE_RS01780 877e4fe5206ae8095a3ae731f7bd7669 385 Gene3D G3DSA:3.80.30.20 11 244 3.6E-30 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RPE_RS01780 877e4fe5206ae8095a3ae731f7bd7669 385 SMART SM00729 8 228 3.7E-48 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RPE_RS01780 877e4fe5206ae8095a3ae731f7bd7669 385 Pfam PF06969 HemN C-terminal domain 312 373 2.7E-9 T 23-04-2016 IPR010723 HemN, C-terminal RPE_RS01780 877e4fe5206ae8095a3ae731f7bd7669 385 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 11 347 6.5E-86 T 23-04-2016 IPR004559 Coproporphyrinogen III oxidase, oxygen-independent related GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00071+1.3.99.-|KEGG: 00280+1.3.99.-|KEGG: 00281+1.3.99.-|KEGG: 00362+1.3.99.-|KEGG: 00626+1.3.99.-|KEGG: 00930+1.3.99.- RPE_RS01780 877e4fe5206ae8095a3ae731f7bd7669 385 Pfam PF04055 Radical SAM superfamily 13 183 6.8E-17 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RPE_RS01780 877e4fe5206ae8095a3ae731f7bd7669 385 SUPERFAMILY SSF102114 6 383 1.12E-105 T 23-04-2016 RPE_RS01780 877e4fe5206ae8095a3ae731f7bd7669 385 PANTHER PTHR13932 1 385 6.2E-127 T 23-04-2016 RPE_RS13300 b46f478b80ee93cbf6be00d1bd5c7c96 4297 PANTHER PTHR12338 73 283 2.2E-36 T 23-04-2016 RPE_RS13300 b46f478b80ee93cbf6be00d1bd5c7c96 4297 PANTHER PTHR12338 319 358 2.2E-36 T 23-04-2016 RPE_RS13300 b46f478b80ee93cbf6be00d1bd5c7c96 4297 PANTHER PTHR12338:SF6 73 283 2.2E-36 T 23-04-2016 RPE_RS13300 b46f478b80ee93cbf6be00d1bd5c7c96 4297 PANTHER PTHR12338:SF6 319 358 2.2E-36 T 23-04-2016 RPE_RS13300 b46f478b80ee93cbf6be00d1bd5c7c96 4297 Pfam PF12545 Filamentous haemagglutinin family outer membrane protein 4078 4190 2.3E-24 T 23-04-2016 IPR021026 Filamentous haemagglutinin family outer membrane protein, domain of unknown function DUF3739 RPE_RS13300 b46f478b80ee93cbf6be00d1bd5c7c96 4297 SUPERFAMILY SSF51126 294 451 5.34E-25 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor RPE_RS13300 b46f478b80ee93cbf6be00d1bd5c7c96 4297 SUPERFAMILY SSF51126 145 244 5.34E-25 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor RPE_RS13300 b46f478b80ee93cbf6be00d1bd5c7c96 4297 Pfam PF05860 haemagglutination activity domain 132 235 5.2E-18 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal RPE_RS13300 b46f478b80ee93cbf6be00d1bd5c7c96 4297 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 160 235 7.3E-19 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal RPE_RS13300 b46f478b80ee93cbf6be00d1bd5c7c96 4297 SMART SM00912 125 240 3.8E-25 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal RPE_RS16770 863ee667fc23c7577ef5f025e392416f 460 PIRSF PIRSF006485 1 454 4.3E-162 T 23-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 RPE_RS16770 863ee667fc23c7577ef5f025e392416f 460 PANTHER PTHR11649:SF68 1 447 3.7E-264 T 23-04-2016 RPE_RS16770 863ee667fc23c7577ef5f025e392416f 460 Gene3D G3DSA:3.30.300.20 373 448 5.1E-32 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta RPE_RS16770 863ee667fc23c7577ef5f025e392416f 460 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 54 69 9.6E-7 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RPE_RS16770 863ee667fc23c7577ef5f025e392416f 460 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 9.6E-7 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RPE_RS16770 863ee667fc23c7577ef5f025e392416f 460 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 366 446 8.8E-31 T 23-04-2016 IPR032859 GTPase Der, C-terminal KH-domain-like RPE_RS16770 863ee667fc23c7577ef5f025e392416f 460 Hamap MF_00195 GTPase Der [der]. 2 449 37.54 T 23-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 RPE_RS16770 863ee667fc23c7577ef5f025e392416f 460 Pfam PF01926 50S ribosome-binding GTPase 190 308 4.1E-24 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RPE_RS16770 863ee667fc23c7577ef5f025e392416f 460 Pfam PF01926 50S ribosome-binding GTPase 5 120 2.8E-27 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RPE_RS16770 863ee667fc23c7577ef5f025e392416f 460 PANTHER PTHR11649 1 447 3.7E-264 T 23-04-2016 RPE_RS16770 863ee667fc23c7577ef5f025e392416f 460 Gene3D G3DSA:3.40.50.300 3 173 1.6E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16770 863ee667fc23c7577ef5f025e392416f 460 Gene3D G3DSA:3.40.50.300 185 372 1.2E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16770 863ee667fc23c7577ef5f025e392416f 460 SUPERFAMILY SSF52540 4 173 6.09E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16770 863ee667fc23c7577ef5f025e392416f 460 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 158 6.6E-23 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RPE_RS16770 863ee667fc23c7577ef5f025e392416f 460 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 188 357 7.4E-29 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RPE_RS16770 863ee667fc23c7577ef5f025e392416f 460 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 4 446 1.3E-167 T 23-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 RPE_RS16770 863ee667fc23c7577ef5f025e392416f 460 SUPERFAMILY SSF52540 138 452 1.2E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS04970 509c4ba0dd8ef652c4d4f0930427b937 329 TIGRFAM TIGR02156 PA_CoA_Oxy1: phenylacetate-CoA oxygenase, PaaG subunit 24 312 1.8E-165 T 23-04-2016 IPR011881 1,2-phenylacetyl-CoA epoxidase, subunit A GO:0010124|GO:0097266 KEGG: 00360+1.14.13.149+1.14.13.14|KEGG: 00940+1.14.13.14|MetaCyc: PWY-5176|UniPathway: UPA00930 RPE_RS04970 509c4ba0dd8ef652c4d4f0930427b937 329 SUPERFAMILY SSF47240 44 285 6.08E-81 T 23-04-2016 IPR009078 Ferritin-like superfamily RPE_RS04970 509c4ba0dd8ef652c4d4f0930427b937 329 PANTHER PTHR30458:SF0 1 329 3.9E-170 T 23-04-2016 RPE_RS04970 509c4ba0dd8ef652c4d4f0930427b937 329 Pfam PF05138 Phenylacetic acid catabolic protein 34 308 2.6E-101 T 23-04-2016 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C GO:0010124 UniPathway: UPA00930 RPE_RS04970 509c4ba0dd8ef652c4d4f0930427b937 329 PANTHER PTHR30458 1 329 3.9E-170 T 23-04-2016 RPE_RS04970 509c4ba0dd8ef652c4d4f0930427b937 329 Gene3D G3DSA:1.20.1260.10 34 288 1.6E-103 T 23-04-2016 IPR012347 Ferritin-related RPE_RS19300 0316cbab407e44bab22f6320e734b5b8 619 Gene3D G3DSA:3.40.50.1780 220 271 3.8E-67 T 23-04-2016 RPE_RS19300 0316cbab407e44bab22f6320e734b5b8 619 Gene3D G3DSA:3.40.50.1780 322 453 3.8E-67 T 23-04-2016 RPE_RS19300 0316cbab407e44bab22f6320e734b5b8 619 SMART SM00902 539 598 5.3E-23 T 23-04-2016 IPR003149 Iron hydrogenase, small subunit RPE_RS19300 0316cbab407e44bab22f6320e734b5b8 619 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 17 98 6.5E-15 T 23-04-2016 RPE_RS19300 0316cbab407e44bab22f6320e734b5b8 619 SUPERFAMILY SSF54862 98 236 1.26E-29 T 23-04-2016 RPE_RS19300 0316cbab407e44bab22f6320e734b5b8 619 SMART SM00929 105 145 4.6E-16 T 23-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 RPE_RS19300 0316cbab407e44bab22f6320e734b5b8 619 Pfam PF13187 4Fe-4S dicluster domain 169 227 1.3E-7 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RPE_RS19300 0316cbab407e44bab22f6320e734b5b8 619 Gene3D G3DSA:3.10.20.30 15 79 5.4E-6 T 23-04-2016 IPR012675 Beta-grasp domain RPE_RS19300 0316cbab407e44bab22f6320e734b5b8 619 PANTHER PTHR11615:SF112 20 595 4.1E-112 T 23-04-2016 RPE_RS19300 0316cbab407e44bab22f6320e734b5b8 619 PANTHER PTHR11615 20 595 4.1E-112 T 23-04-2016 RPE_RS19300 0316cbab407e44bab22f6320e734b5b8 619 TIGRFAM TIGR02512 FeFe_hydrog_A: [FeFe] hydrogenase, group A 163 535 7.4E-156 T 23-04-2016 IPR013352 Iron hydrogenase, subset GO:0005506|GO:0008901|GO:0051536|GO:0055114 RPE_RS19300 0316cbab407e44bab22f6320e734b5b8 619 Gene3D G3DSA:4.10.260.20 544 614 7.9E-24 T 23-04-2016 IPR003149 Iron hydrogenase, small subunit RPE_RS19300 0316cbab407e44bab22f6320e734b5b8 619 SUPERFAMILY SSF54292 19 95 1.24E-13 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RPE_RS19300 0316cbab407e44bab22f6320e734b5b8 619 SUPERFAMILY SSF53920 213 594 1.28E-118 T 23-04-2016 IPR009016 Iron hydrogenase RPE_RS19300 0316cbab407e44bab22f6320e734b5b8 619 Pfam PF02906 Iron only hydrogenase large subunit, C-terminal domain 248 532 7.8E-84 T 23-04-2016 IPR004108 Iron hydrogenase, large subunit, C-terminal RPE_RS19300 0316cbab407e44bab22f6320e734b5b8 619 Pfam PF02256 Iron hydrogenase small subunit 546 597 8.5E-21 T 23-04-2016 IPR003149 Iron hydrogenase, small subunit RPE_RS19300 0316cbab407e44bab22f6320e734b5b8 619 Gene3D G3DSA:3.30.70.20 158 219 2.2E-11 T 23-04-2016 RPE_RS19300 0316cbab407e44bab22f6320e734b5b8 619 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 213 224 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RPE_RS19300 0316cbab407e44bab22f6320e734b5b8 619 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 106 144 2.1E-13 T 23-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 RPE_RS19545 149c69d3e7960f926fa25118da1c90a4 412 SUPERFAMILY SSF103473 26 395 2.49E-23 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS19545 149c69d3e7960f926fa25118da1c90a4 412 Pfam PF07690 Major Facilitator Superfamily 26 352 1.5E-11 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RPE_RS19545 149c69d3e7960f926fa25118da1c90a4 412 Gene3D G3DSA:1.20.1250.20 31 189 1.4E-7 T 23-04-2016 RPE_RS19545 149c69d3e7960f926fa25118da1c90a4 412 Gene3D G3DSA:1.20.1250.20 218 396 5.4E-7 T 23-04-2016 RPE_RS19545 149c69d3e7960f926fa25118da1c90a4 412 PANTHER PTHR23513 6 407 3.3E-31 T 23-04-2016 RPE_RS01875 437939051ad734c63e477086dad8ecec 452 PANTHER PTHR30124 1 433 7.7E-159 T 23-04-2016 RPE_RS01875 437939051ad734c63e477086dad8ecec 452 SUPERFAMILY SSF50685 2 360 2.51E-123 T 23-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain RPE_RS01875 437939051ad734c63e477086dad8ecec 452 PANTHER PTHR30124:SF0 1 433 7.7E-159 T 23-04-2016 RPE_RS01875 437939051ad734c63e477086dad8ecec 452 Pfam PF06725 3D domain 275 352 2.9E-24 T 23-04-2016 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 RPE_RS01875 437939051ad734c63e477086dad8ecec 452 SMART SM00925 95 253 3.9E-85 T 23-04-2016 IPR005300 Lytic transglycosylase MltA GO:0004553 RPE_RS01875 437939051ad734c63e477086dad8ecec 452 Gene3D G3DSA:2.40.40.10 164 359 1.3E-51 T 23-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain RPE_RS01875 437939051ad734c63e477086dad8ecec 452 Gene3D G3DSA:2.40.40.10 2 159 2.7E-32 T 23-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain RPE_RS01875 437939051ad734c63e477086dad8ecec 452 Pfam PF03562 MltA specific insert domain 11 253 1.5E-78 T 23-04-2016 IPR005300 Lytic transglycosylase MltA GO:0004553 RPE_RS17455 81fadeadf4c579761ed166fea28b6558 167 Pfam PF01980 Uncharacterised protein family UPF0066 40 146 5.6E-23 T 23-04-2016 IPR023370 TsaA-like domain RPE_RS17455 81fadeadf4c579761ed166fea28b6558 167 PANTHER PTHR12818 27 144 6.1E-32 T 23-04-2016 RPE_RS17455 81fadeadf4c579761ed166fea28b6558 167 SUPERFAMILY SSF118196 24 153 1.96E-39 T 23-04-2016 IPR023370 TsaA-like domain RPE_RS17455 81fadeadf4c579761ed166fea28b6558 167 Gene3D G3DSA:2.40.30.70 26 149 2.6E-34 T 23-04-2016 IPR023370 TsaA-like domain RPE_RS16645 a7a4dbde32239e9fb3faf1de8aa0896f 498 Pfam PF00772 DnaB-like helicase N terminal domain 23 124 2.1E-25 T 23-04-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 RPE_RS16645 a7a4dbde32239e9fb3faf1de8aa0896f 498 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 23 489 1.2E-150 T 23-04-2016 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 RPE_RS16645 a7a4dbde32239e9fb3faf1de8aa0896f 498 Gene3D G3DSA:1.10.860.10 24 124 8.1E-26 T 23-04-2016 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal RPE_RS16645 a7a4dbde32239e9fb3faf1de8aa0896f 498 SMART SM00382 218 437 1.2E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS16645 a7a4dbde32239e9fb3faf1de8aa0896f 498 PANTHER PTHR30153 449 497 2.8E-168 T 23-04-2016 RPE_RS16645 a7a4dbde32239e9fb3faf1de8aa0896f 498 PANTHER PTHR30153 7 432 2.8E-168 T 23-04-2016 RPE_RS16645 a7a4dbde32239e9fb3faf1de8aa0896f 498 Gene3D G3DSA:3.40.50.300 187 489 2.9E-92 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16645 a7a4dbde32239e9fb3faf1de8aa0896f 498 SUPERFAMILY SSF48024 21 132 3.79E-30 T 23-04-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 RPE_RS16645 a7a4dbde32239e9fb3faf1de8aa0896f 498 SUPERFAMILY SSF52540 200 480 1.85E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16645 a7a4dbde32239e9fb3faf1de8aa0896f 498 Pfam PF03796 DnaB-like helicase C terminal domain 201 487 2.0E-101 T 23-04-2016 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 RPE_RS20435 98d450c4c189e6e8690f29edf18ad323 162 Gene3D G3DSA:3.40.50.7700 2 161 3.5E-71 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 RPE_RS20435 98d450c4c189e6e8690f29edf18ad323 162 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 5 158 31.901 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 RPE_RS20435 98d450c4c189e6e8690f29edf18ad323 162 PIRSF PIRSF001338 1 162 4.8E-64 T 23-04-2016 IPR024694 N5-carboxyaminoimidazole ribonucleotide mutase PurE GO:0006189|GO:0034023 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234|UniPathway: UPA00074 RPE_RS20435 98d450c4c189e6e8690f29edf18ad323 162 Pfam PF00731 AIR carboxylase 5 152 5.3E-61 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 RPE_RS20435 98d450c4c189e6e8690f29edf18ad323 162 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 5 160 2.9E-64 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 RPE_RS20435 98d450c4c189e6e8690f29edf18ad323 162 SUPERFAMILY SSF52255 5 160 2.22E-63 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 RPE_RS20435 98d450c4c189e6e8690f29edf18ad323 162 SMART SM01001 3 154 6.6E-97 T 23-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 RPE_RS20435 98d450c4c189e6e8690f29edf18ad323 162 PANTHER PTHR23046:SF2 1 161 2.2E-81 T 23-04-2016 RPE_RS20435 98d450c4c189e6e8690f29edf18ad323 162 PANTHER PTHR23046 1 161 2.2E-81 T 23-04-2016 RPE_RS18005 0fc052eaee19331a0dab002c8c0d6ee6 697 SMART SM00382 465 657 2.7E-18 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS18005 0fc052eaee19331a0dab002c8c0d6ee6 697 SUPERFAMILY SSF90123 109 427 1.02E-61 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RPE_RS18005 0fc052eaee19331a0dab002c8c0d6ee6 697 PANTHER PTHR24221 61 692 1.2E-269 T 23-04-2016 RPE_RS18005 0fc052eaee19331a0dab002c8c0d6ee6 697 ProSitePatterns PS00211 ABC transporters family signature. 577 591 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS18005 0fc052eaee19331a0dab002c8c0d6ee6 697 Gene3D G3DSA:1.20.1560.10 111 427 3.5E-58 T 23-04-2016 RPE_RS18005 0fc052eaee19331a0dab002c8c0d6ee6 697 Gene3D G3DSA:3.40.50.300 439 670 5.3E-81 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18005 0fc052eaee19331a0dab002c8c0d6ee6 697 Pfam PF00664 ABC transporter transmembrane region 124 385 1.1E-36 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RPE_RS18005 0fc052eaee19331a0dab002c8c0d6ee6 697 PANTHER PTHR24221:SF266 61 692 1.2E-269 T 23-04-2016 RPE_RS18005 0fc052eaee19331a0dab002c8c0d6ee6 697 Pfam PF00005 ABC transporter 456 605 2.0E-37 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS18005 0fc052eaee19331a0dab002c8c0d6ee6 697 SUPERFAMILY SSF52540 429 675 1.67E-87 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS03855 6afbb9597f8f15af07f44b4f24cbc6bd 454 PANTHER PTHR10314:SF21 32 186 3.4E-238 T 23-04-2016 IPR006316 Tryptophan synthase, beta chain-like GO:0000162|GO:0004834|GO:0030170 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RPE_RS03855 6afbb9597f8f15af07f44b4f24cbc6bd 454 PANTHER PTHR10314:SF21 203 450 3.4E-238 T 23-04-2016 IPR006316 Tryptophan synthase, beta chain-like GO:0000162|GO:0004834|GO:0030170 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RPE_RS03855 6afbb9597f8f15af07f44b4f24cbc6bd 454 PIRSF PIRSF001413 10 434 2.1E-115 T 23-04-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RPE_RS03855 6afbb9597f8f15af07f44b4f24cbc6bd 454 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 106 120 - T 23-04-2016 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RPE_RS03855 6afbb9597f8f15af07f44b4f24cbc6bd 454 TIGRFAM TIGR01415 trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme 14 431 2.8E-186 T 23-04-2016 IPR006316 Tryptophan synthase, beta chain-like GO:0000162|GO:0004834|GO:0030170 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RPE_RS03855 6afbb9597f8f15af07f44b4f24cbc6bd 454 PANTHER PTHR10314 32 186 3.4E-238 T 23-04-2016 RPE_RS03855 6afbb9597f8f15af07f44b4f24cbc6bd 454 PANTHER PTHR10314 203 450 3.4E-238 T 23-04-2016 RPE_RS03855 6afbb9597f8f15af07f44b4f24cbc6bd 454 PIRSF PIRSF500824 2 437 2.5E-197 T 23-04-2016 IPR006316 Tryptophan synthase, beta chain-like GO:0000162|GO:0004834|GO:0030170 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RPE_RS03855 6afbb9597f8f15af07f44b4f24cbc6bd 454 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 77 415 8.8E-42 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RPE_RS03855 6afbb9597f8f15af07f44b4f24cbc6bd 454 Gene3D G3DSA:3.40.50.1100 130 215 2.5E-9 T 23-04-2016 RPE_RS03855 6afbb9597f8f15af07f44b4f24cbc6bd 454 Gene3D G3DSA:3.40.50.1100 216 433 1.2E-54 T 23-04-2016 RPE_RS03855 6afbb9597f8f15af07f44b4f24cbc6bd 454 SUPERFAMILY SSF53686 31 428 2.36E-107 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RPE_RS03855 6afbb9597f8f15af07f44b4f24cbc6bd 454 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 22 428 38.063 T 23-04-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RPE_RS01950 88e1da8adfaa9299fb0db5acf0319729 183 Pfam PF04390 Lipopolysaccharide-assembly 18 175 5.6E-8 T 23-04-2016 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 RPE_RS00540 8fd114c777ab13b13245bd39b5549d3f 270 Pfam PF02633 Creatinine amidohydrolase 12 252 7.0E-62 T 23-04-2016 IPR003785 Creatininase/formamide hydrolase KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|KEGG: 00740+3.5.1.102|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-6167|UniPathway: UPA00071|UniPathway: UPA00275 RPE_RS00540 8fd114c777ab13b13245bd39b5549d3f 270 PANTHER PTHR35005:SF1 2 268 7.5E-51 T 23-04-2016 RPE_RS00540 8fd114c777ab13b13245bd39b5549d3f 270 Gene3D G3DSA:3.40.50.10310 7 258 1.2E-72 T 23-04-2016 IPR024087 Creatininase-like domain KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|KEGG: 00740+3.5.1.102|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-6167|UniPathway: UPA00071|UniPathway: UPA00275 RPE_RS00540 8fd114c777ab13b13245bd39b5549d3f 270 PANTHER PTHR35005 2 268 7.5E-51 T 23-04-2016 RPE_RS00540 8fd114c777ab13b13245bd39b5549d3f 270 SUPERFAMILY SSF102215 8 257 1.11E-68 T 23-04-2016 IPR024087 Creatininase-like domain KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|KEGG: 00740+3.5.1.102|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-6167|UniPathway: UPA00071|UniPathway: UPA00275 RPE_RS22625 1c7b32a48df0fbb3ac906a9fe58b394a 554 Gene3D G3DSA:3.40.50.1980 323 460 1.5E-46 T 23-04-2016 RPE_RS22625 1c7b32a48df0fbb3ac906a9fe58b394a 554 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 129 143 - T 23-04-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 RPE_RS22625 1c7b32a48df0fbb3ac906a9fe58b394a 554 Pfam PF04324 BFD-like [2Fe-2S] binding domain 492 542 6.3E-15 T 23-04-2016 IPR007419 BFD-like [2Fe-2S]-binding domain RPE_RS22625 1c7b32a48df0fbb3ac906a9fe58b394a 554 PANTHER PTHR33712:SF6 2 529 1.6E-224 T 23-04-2016 RPE_RS22625 1c7b32a48df0fbb3ac906a9fe58b394a 554 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 63 70 - T 23-04-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 RPE_RS22625 1c7b32a48df0fbb3ac906a9fe58b394a 554 TIGRFAM TIGR01283 nifE: nitrogenase MoFe cofactor biosynthesis protein NifE 6 457 2.6E-196 T 23-04-2016 IPR005973 Nitrogenase MoFe cofactor biosynthesis protein NifE GO:0006461|GO:0009399 UniPathway: UPA00782 RPE_RS22625 1c7b32a48df0fbb3ac906a9fe58b394a 554 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 45 443 1.4E-104 T 23-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 RPE_RS22625 1c7b32a48df0fbb3ac906a9fe58b394a 554 SUPERFAMILY SSF53807 19 462 4.91E-138 T 23-04-2016 RPE_RS22625 1c7b32a48df0fbb3ac906a9fe58b394a 554 PANTHER PTHR33712 2 529 1.6E-224 T 23-04-2016 RPE_RS22625 1c7b32a48df0fbb3ac906a9fe58b394a 554 Gene3D G3DSA:3.40.50.1980 45 180 3.0E-45 T 23-04-2016 RPE_RS22625 1c7b32a48df0fbb3ac906a9fe58b394a 554 Gene3D G3DSA:3.40.50.1980 181 289 3.2E-47 T 23-04-2016 RPE_RS23715 c2a970a9c9791295f91efbc2a807301d 473 PIRSF PIRSF004919 15 473 9.5E-133 T 23-04-2016 IPR025502 TldD KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RPE_RS23715 c2a970a9c9791295f91efbc2a807301d 473 PANTHER PTHR30624:SF4 4 472 8.5E-212 T 23-04-2016 RPE_RS23715 c2a970a9c9791295f91efbc2a807301d 473 SUPERFAMILY SSF111283 25 472 1.57E-124 T 23-04-2016 RPE_RS23715 c2a970a9c9791295f91efbc2a807301d 473 PANTHER PTHR30624 4 472 8.5E-212 T 23-04-2016 RPE_RS23715 c2a970a9c9791295f91efbc2a807301d 473 Pfam PF01523 Putative modulator of DNA gyrase 34 324 1.8E-61 T 23-04-2016 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RPE_RS21285 9ac588615fd88dbdd43a6696f120487c 324 SUPERFAMILY SSF51735 8 317 1.76E-69 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS21285 9ac588615fd88dbdd43a6696f120487c 324 Gene3D G3DSA:3.90.25.10 267 320 1.2E-22 T 23-04-2016 RPE_RS21285 9ac588615fd88dbdd43a6696f120487c 324 Gene3D G3DSA:3.90.25.10 182 223 1.2E-22 T 23-04-2016 RPE_RS21285 9ac588615fd88dbdd43a6696f120487c 324 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 132 160 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RPE_RS21285 9ac588615fd88dbdd43a6696f120487c 324 PANTHER PTHR10366 10 316 3.5E-61 T 23-04-2016 RPE_RS21285 9ac588615fd88dbdd43a6696f120487c 324 Pfam PF16363 GDP-mannose 4,6 dehydratase 50 307 2.9E-45 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS21285 9ac588615fd88dbdd43a6696f120487c 324 Gene3D G3DSA:3.40.50.720 224 261 3.2E-42 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS21285 9ac588615fd88dbdd43a6696f120487c 324 Gene3D G3DSA:3.40.50.720 6 177 3.2E-42 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS14255 ab1e7dff97927b5cfe0316765c506e51 312 PANTHER PTHR30477 14 299 1.5E-57 T 23-04-2016 RPE_RS14255 ab1e7dff97927b5cfe0316765c506e51 312 PANTHER PTHR30477:SF8 14 299 1.5E-57 T 23-04-2016 RPE_RS14255 ab1e7dff97927b5cfe0316765c506e51 312 SUPERFAMILY SSF81345 7 273 1.14E-20 T 23-04-2016 IPR029022 ABC transporter, BtuC-like RPE_RS14255 ab1e7dff97927b5cfe0316765c506e51 312 Pfam PF00950 ABC 3 transport family 157 285 1.9E-16 T 23-04-2016 IPR001626 ABC-3 GO:0005524|GO:0006810|GO:0016020|GO:0042626 RPE_RS14255 ab1e7dff97927b5cfe0316765c506e51 312 Pfam PF00950 ABC 3 transport family 13 130 2.9E-23 T 23-04-2016 IPR001626 ABC-3 GO:0005524|GO:0006810|GO:0016020|GO:0042626 RPE_RS03535 432e555c322b150a53e01686d78c2a53 119 PANTHER PTHR26402 2 118 4.8E-32 T 23-04-2016 RPE_RS03535 432e555c322b150a53e01686d78c2a53 119 Pfam PF00072 Response regulator receiver domain 4 113 2.2E-22 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS03535 432e555c322b150a53e01686d78c2a53 119 PANTHER PTHR26402:SF481 2 118 4.8E-32 T 23-04-2016 RPE_RS03535 432e555c322b150a53e01686d78c2a53 119 SUPERFAMILY SSF52172 1 118 9.82E-30 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS03535 432e555c322b150a53e01686d78c2a53 119 Gene3D G3DSA:3.40.50.2300 1 118 2.4E-32 T 23-04-2016 RPE_RS03535 432e555c322b150a53e01686d78c2a53 119 SMART SM00448 2 113 1.6E-19 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS14055 d2e539f94fb5b1efd09cdf25cf464019 244 PIRSF PIRSF000851 7 244 5.7E-88 T 23-04-2016 IPR026027 Phosphatidylcholine synthase Pcs KEGG: 00564+2.7.8.24|MetaCyc: PWY-6826 RPE_RS10030 d21aad09a22ad2caea9ec7b8f6894c37 463 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 3 450 6.6E-124 T 23-04-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 RPE_RS10030 d21aad09a22ad2caea9ec7b8f6894c37 463 SUPERFAMILY SSF52374 2 339 3.22E-82 T 23-04-2016 RPE_RS10030 d21aad09a22ad2caea9ec7b8f6894c37 463 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 3 461 36.14 T 23-04-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 RPE_RS10030 d21aad09a22ad2caea9ec7b8f6894c37 463 PANTHER PTHR10890 1 462 4.1E-193 T 23-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RPE_RS10030 d21aad09a22ad2caea9ec7b8f6894c37 463 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 16 339 4.8E-106 T 23-04-2016 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 RPE_RS10030 d21aad09a22ad2caea9ec7b8f6894c37 463 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 26 37 7.2E-24 T 23-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RPE_RS10030 d21aad09a22ad2caea9ec7b8f6894c37 463 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 209 227 7.2E-24 T 23-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RPE_RS10030 d21aad09a22ad2caea9ec7b8f6894c37 463 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 64 73 7.2E-24 T 23-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RPE_RS10030 d21aad09a22ad2caea9ec7b8f6894c37 463 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 240 261 7.2E-24 T 23-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RPE_RS10030 d21aad09a22ad2caea9ec7b8f6894c37 463 Gene3D G3DSA:3.40.50.620 20 331 3.7E-94 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS10030 d21aad09a22ad2caea9ec7b8f6894c37 463 Gene3D G3DSA:1.20.120.640 353 383 5.0E-4 T 23-04-2016 RPE_RS10030 d21aad09a22ad2caea9ec7b8f6894c37 463 SUPERFAMILY SSF47323 348 451 3.27E-22 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS21340 a96a69db81ed22057680b4dd117840cb 339 PANTHER PTHR10366:SF39 1 337 7.5E-147 T 23-04-2016 RPE_RS21340 a96a69db81ed22057680b4dd117840cb 339 SUPERFAMILY SSF51735 2 334 2.67E-96 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS21340 a96a69db81ed22057680b4dd117840cb 339 Pfam PF16363 GDP-mannose 4,6 dehydratase 3 321 1.7E-60 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS21340 a96a69db81ed22057680b4dd117840cb 339 Gene3D G3DSA:3.90.25.10 178 334 2.2E-53 T 23-04-2016 RPE_RS21340 a96a69db81ed22057680b4dd117840cb 339 PANTHER PTHR10366 1 337 7.5E-147 T 23-04-2016 RPE_RS21340 a96a69db81ed22057680b4dd117840cb 339 Gene3D G3DSA:3.40.50.720 2 177 6.7E-52 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS21340 a96a69db81ed22057680b4dd117840cb 339 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 1 332 1.5E-133 T 23-04-2016 IPR005886 UDP-glucose 4-epimerase GalE GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|UniPathway: UPA00214 RPE_RS14470 386ca1dc4931073b6bb75166d055ecb5 577 SUPERFAMILY SSF103190 102 194 1.05E-8 T 23-04-2016 IPR029151 Periplasmic sensor domain-like RPE_RS14470 386ca1dc4931073b6bb75166d055ecb5 577 PANTHER PTHR32089 183 262 4.7E-186 T 23-04-2016 RPE_RS14470 386ca1dc4931073b6bb75166d055ecb5 577 SUPERFAMILY SSF158472 229 273 1.31E-8 T 23-04-2016 RPE_RS14470 386ca1dc4931073b6bb75166d055ecb5 577 Gene3D G3DSA:1.10.287.950 333 541 5.7E-50 T 23-04-2016 RPE_RS14470 386ca1dc4931073b6bb75166d055ecb5 577 PANTHER PTHR32089:SF40 183 262 4.7E-186 T 23-04-2016 RPE_RS14470 386ca1dc4931073b6bb75166d055ecb5 577 SUPERFAMILY SSF58104 292 570 5.36E-65 T 23-04-2016 RPE_RS14470 386ca1dc4931073b6bb75166d055ecb5 577 PANTHER PTHR32089 295 574 4.7E-186 T 23-04-2016 RPE_RS14470 386ca1dc4931073b6bb75166d055ecb5 577 PANTHER PTHR32089:SF40 295 574 4.7E-186 T 23-04-2016 RPE_RS14470 386ca1dc4931073b6bb75166d055ecb5 577 Pfam PF00672 HAMP domain 207 268 8.6E-12 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS14470 386ca1dc4931073b6bb75166d055ecb5 577 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 378 570 1.3E-35 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS14470 386ca1dc4931073b6bb75166d055ecb5 577 SMART SM00304 227 280 6.3E-5 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS14470 386ca1dc4931073b6bb75166d055ecb5 577 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 345 374 1.6E-6 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS14470 386ca1dc4931073b6bb75166d055ecb5 577 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 444 473 1.6E-6 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS14470 386ca1dc4931073b6bb75166d055ecb5 577 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 492 521 1.6E-6 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS14470 386ca1dc4931073b6bb75166d055ecb5 577 SMART SM00283 317 571 2.8E-50 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS14470 386ca1dc4931073b6bb75166d055ecb5 577 Pfam PF17202 Single cache domain 3 97 200 7.1E-29 T 23-04-2016 IPR033463 Single cache domain 3 RPE_RS04215 bf45919b6bb7069f734890f903dbd390 241 Gene3D G3DSA:3.40.50.880 1 230 2.5E-53 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RPE_RS04215 bf45919b6bb7069f734890f903dbd390 241 SUPERFAMILY SSF52317 1 235 8.65E-42 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RPE_RS04215 bf45919b6bb7069f734890f903dbd390 241 PANTHER PTHR11922 32 188 1.0E-37 T 23-04-2016 RPE_RS04215 bf45919b6bb7069f734890f903dbd390 241 Pfam PF00117 Glutamine amidotransferase class-I 41 183 5.7E-21 T 23-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 RPE_RS04215 bf45919b6bb7069f734890f903dbd390 241 PANTHER PTHR11922:SF11 32 188 1.0E-37 T 23-04-2016 RPE_RS00435 4abaaba1acbddd15df3d6d27f38a3573 1102 Gene3D G3DSA:3.90.260.10 176 253 1.4E-10 T 23-04-2016 IPR002931 Transglutaminase-like RPE_RS00435 4abaaba1acbddd15df3d6d27f38a3573 1102 Pfam PF01841 Transglutaminase-like superfamily 136 246 2.3E-18 T 23-04-2016 IPR002931 Transglutaminase-like RPE_RS00435 4abaaba1acbddd15df3d6d27f38a3573 1102 SMART SM00460 172 248 7.4E-21 T 23-04-2016 IPR002931 Transglutaminase-like RPE_RS00435 4abaaba1acbddd15df3d6d27f38a3573 1102 PANTHER PTHR33490:SF1 1 510 2.2E-255 T 23-04-2016 RPE_RS00435 4abaaba1acbddd15df3d6d27f38a3573 1102 SUPERFAMILY SSF54001 8 337 1.96E-72 T 23-04-2016 RPE_RS00435 4abaaba1acbddd15df3d6d27f38a3573 1102 PANTHER PTHR33490 1 510 2.2E-255 T 23-04-2016 RPE_RS00435 4abaaba1acbddd15df3d6d27f38a3573 1102 Pfam PF09899 Putative amidoligase enzyme (DUF2126) 276 1098 0.0 T 23-04-2016 IPR018667 Domain of unknown function DUF2126 RPE_RS00435 4abaaba1acbddd15df3d6d27f38a3573 1102 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 6 82 1.4E-29 T 23-04-2016 IPR013589 Bacterial transglutaminase-like, N-terminal RPE_RS19600 52ac9f8792861480874879e482802a23 210 Gene3D G3DSA:3.40.50.2300 6 153 9.1E-32 T 23-04-2016 RPE_RS19600 52ac9f8792861480874879e482802a23 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 202 1.1E-19 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS19600 52ac9f8792861480874879e482802a23 210 Gene3D G3DSA:1.10.10.10 154 204 4.1E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS19600 52ac9f8792861480874879e482802a23 210 SUPERFAMILY SSF52172 7 131 3.27E-33 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS19600 52ac9f8792861480874879e482802a23 210 SMART SM00421 146 203 4.1E-21 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS19600 52ac9f8792861480874879e482802a23 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 1.1E-12 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS19600 52ac9f8792861480874879e482802a23 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 1.1E-12 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS19600 52ac9f8792861480874879e482802a23 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 1.1E-12 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS19600 52ac9f8792861480874879e482802a23 210 SUPERFAMILY SSF46894 143 204 4.08E-19 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RPE_RS19600 52ac9f8792861480874879e482802a23 210 PANTHER PTHR26402 8 202 5.7E-54 T 23-04-2016 RPE_RS19600 52ac9f8792861480874879e482802a23 210 SMART SM00448 8 119 4.6E-30 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS19600 52ac9f8792861480874879e482802a23 210 Pfam PF00072 Response regulator receiver domain 10 119 1.1E-24 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS02125 2f30b466d763b3788c8283ec4fdc74db 142 Gene3D G3DSA:2.60.120.460 1 141 5.2E-42 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 RPE_RS02125 2f30b466d763b3788c8283ec4fdc74db 142 PANTHER PTHR30615 1 142 9.2E-32 T 23-04-2016 RPE_RS02125 2f30b466d763b3788c8283ec4fdc74db 142 Pfam PF01894 Uncharacterised protein family UPF0047 20 132 4.2E-36 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 RPE_RS02125 2f30b466d763b3788c8283ec4fdc74db 142 TIGRFAM TIGR00149 TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme 9 140 1.6E-32 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 RPE_RS02125 2f30b466d763b3788c8283ec4fdc74db 142 PIRSF PIRSF004681 1 141 3.2E-36 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 RPE_RS02125 2f30b466d763b3788c8283ec4fdc74db 142 SUPERFAMILY SSF111038 1 140 1.11E-41 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 RPE_RS08760 7e0f5f952b2b4c9787f3484dd70a4851 239 Gene3D G3DSA:1.10.10.10 164 237 8.9E-19 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS08760 7e0f5f952b2b4c9787f3484dd70a4851 239 Gene3D G3DSA:2.60.120.10 19 163 5.2E-20 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS08760 7e0f5f952b2b4c9787f3484dd70a4851 239 Pfam PF00325 Bacterial regulatory proteins, crp family 187 218 9.6E-18 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RPE_RS08760 7e0f5f952b2b4c9787f3484dd70a4851 239 PANTHER PTHR24567 20 237 1.6E-65 T 23-04-2016 RPE_RS08760 7e0f5f952b2b4c9787f3484dd70a4851 239 SUPERFAMILY SSF46785 159 235 1.28E-15 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS08760 7e0f5f952b2b4c9787f3484dd70a4851 239 SMART SM00100 27 145 2.9E-18 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RPE_RS08760 7e0f5f952b2b4c9787f3484dd70a4851 239 SMART SM00419 181 229 1.0E-15 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RPE_RS08760 7e0f5f952b2b4c9787f3484dd70a4851 239 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 187 203 2.0E-11 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RPE_RS08760 7e0f5f952b2b4c9787f3484dd70a4851 239 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 203 218 2.0E-11 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RPE_RS08760 7e0f5f952b2b4c9787f3484dd70a4851 239 PANTHER PTHR24567:SF28 20 237 1.6E-65 T 23-04-2016 RPE_RS08760 7e0f5f952b2b4c9787f3484dd70a4851 239 ProSitePatterns PS00042 Crp-type HTH domain signature. 189 212 - T 23-04-2016 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 RPE_RS08760 7e0f5f952b2b4c9787f3484dd70a4851 239 SUPERFAMILY SSF51206 20 157 4.71E-28 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like RPE_RS08760 7e0f5f952b2b4c9787f3484dd70a4851 239 Pfam PF00027 Cyclic nucleotide-binding domain 46 129 3.3E-12 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RPE_RS17090 befde7cd891978d732d2addcd162c3e9 198 Gene3D G3DSA:1.10.3290.10 30 196 1.2E-31 T 23-04-2016 IPR003812 Fido domain RPE_RS17090 befde7cd891978d732d2addcd162c3e9 198 PANTHER PTHR13504 36 197 4.7E-19 T 23-04-2016 RPE_RS17090 befde7cd891978d732d2addcd162c3e9 198 TIGRFAM TIGR02613 mob_myst_B: mobile mystery protein B 11 197 2.3E-85 T 23-04-2016 IPR013436 Mobile mystery protein B RPE_RS17090 befde7cd891978d732d2addcd162c3e9 198 SUPERFAMILY SSF140931 37 195 2.35E-27 T 23-04-2016 IPR003812 Fido domain RPE_RS17090 befde7cd891978d732d2addcd162c3e9 198 Pfam PF02661 Fic/DOC family 61 151 3.2E-16 T 23-04-2016 IPR003812 Fido domain RPE_RS01550 34e9b6720da00dfb40b93b4e0496e014 272 SUPERFAMILY SSF52833 52 270 1.54E-73 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS01550 34e9b6720da00dfb40b93b4e0496e014 272 Pfam PF06764 Protein of unknown function (DUF1223) 57 253 2.4E-67 T 23-04-2016 IPR010634 Protein of unknown function DUF1223 RPE_RS01550 34e9b6720da00dfb40b93b4e0496e014 272 PANTHER PTHR36057 43 271 2.5E-73 T 23-04-2016 RPE_RS01550 34e9b6720da00dfb40b93b4e0496e014 272 PANTHER PTHR36057:SF1 43 271 2.5E-73 T 23-04-2016 RPE_RS07315 c32b4833e1f14e886433fb48d1d920d3 327 PRINTS PR01713 Nucleotide sugar epimerase signature 29 45 9.1E-24 T 23-04-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 RPE_RS07315 c32b4833e1f14e886433fb48d1d920d3 327 PRINTS PR01713 Nucleotide sugar epimerase signature 248 263 9.1E-24 T 23-04-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 RPE_RS07315 c32b4833e1f14e886433fb48d1d920d3 327 PRINTS PR01713 Nucleotide sugar epimerase signature 216 231 9.1E-24 T 23-04-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 RPE_RS07315 c32b4833e1f14e886433fb48d1d920d3 327 PRINTS PR01713 Nucleotide sugar epimerase signature 287 304 9.1E-24 T 23-04-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 RPE_RS07315 c32b4833e1f14e886433fb48d1d920d3 327 PANTHER PTHR10366 2 327 3.7E-165 T 23-04-2016 RPE_RS07315 c32b4833e1f14e886433fb48d1d920d3 327 Gene3D G3DSA:3.90.25.10 199 218 3.5E-16 T 23-04-2016 RPE_RS07315 c32b4833e1f14e886433fb48d1d920d3 327 Gene3D G3DSA:3.90.25.10 252 322 3.5E-16 T 23-04-2016 RPE_RS07315 c32b4833e1f14e886433fb48d1d920d3 327 PANTHER PTHR10366:SF77 2 327 3.7E-165 T 23-04-2016 RPE_RS07315 c32b4833e1f14e886433fb48d1d920d3 327 SUPERFAMILY SSF51735 1 324 1.32E-87 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS07315 c32b4833e1f14e886433fb48d1d920d3 327 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 254 2.8E-57 T 23-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 RPE_RS07315 c32b4833e1f14e886433fb48d1d920d3 327 Gene3D G3DSA:3.40.50.720 1 198 1.5E-60 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS03940 a0ae1a506ad84df50ce07470cff58373 227 Pfam PF08281 Sigma-70, region 4 159 210 1.9E-14 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS03940 a0ae1a506ad84df50ce07470cff58373 227 SUPERFAMILY SSF88659 154 216 7.1E-19 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS03940 a0ae1a506ad84df50ce07470cff58373 227 PANTHER PTHR30173 34 224 1.7E-47 T 23-04-2016 RPE_RS03940 a0ae1a506ad84df50ce07470cff58373 227 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 85 117 - T 23-04-2016 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS03940 a0ae1a506ad84df50ce07470cff58373 227 Pfam PF04542 Sigma-70 region 2 63 128 6.1E-21 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS03940 a0ae1a506ad84df50ce07470cff58373 227 SUPERFAMILY SSF88946 40 142 1.73E-29 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS03940 a0ae1a506ad84df50ce07470cff58373 227 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 59 213 4.0E-31 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS03940 a0ae1a506ad84df50ce07470cff58373 227 Gene3D G3DSA:1.10.1740.10 42 146 1.3E-31 T 23-04-2016 RPE_RS03940 a0ae1a506ad84df50ce07470cff58373 227 Gene3D G3DSA:1.10.10.10 152 215 3.2E-18 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS14895 dec0facef37c68199e0735d91f737acd 439 SUPERFAMILY SSF101960 24 436 3.27E-97 T 23-04-2016 RPE_RS14895 dec0facef37c68199e0735d91f737acd 439 PANTHER PTHR30508:SF0 16 438 7.3E-113 T 23-04-2016 RPE_RS14895 dec0facef37c68199e0735d91f737acd 439 PANTHER PTHR30508 16 438 7.3E-113 T 23-04-2016 RPE_RS14895 dec0facef37c68199e0735d91f737acd 439 TIGRFAM TIGR01981 sufD: FeS assembly protein SufD 151 424 1.3E-76 T 23-04-2016 IPR011542 SUF system FeS cluster assembly, SufD GO:0016226 RPE_RS14895 dec0facef37c68199e0735d91f737acd 439 Pfam PF01458 Uncharacterized protein family (UPF0051) 187 410 1.9E-65 T 23-04-2016 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 RPE_RS09945 933878cab2c23bf71b210c29376a2b1c 362 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 25 6.1E-5 T 23-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RPE_RS09945 933878cab2c23bf71b210c29376a2b1c 362 PANTHER PTHR33376 1 342 1.1E-177 T 23-04-2016 RPE_RS09945 933878cab2c23bf71b210c29376a2b1c 362 PANTHER PTHR33376:SF5 1 342 1.1E-177 T 23-04-2016 RPE_RS09945 933878cab2c23bf71b210c29376a2b1c 362 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 1 24 2.0E-6 T 23-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RPE_RS09945 933878cab2c23bf71b210c29376a2b1c 362 PIRSF PIRSF039026 1 355 4.8E-126 T 23-04-2016 IPR026289 Solute binding protein, mannitol/chloroaromatic system-like RPE_RS09945 933878cab2c23bf71b210c29376a2b1c 362 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 38 322 1.1E-65 T 23-04-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 RPE_RS08990 d833ff378791eff51c24c9096e020c73 338 Pfam PF03601 Conserved hypothetical protein 698 18 318 4.4E-87 T 23-04-2016 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 RPE_RS08990 d833ff378791eff51c24c9096e020c73 338 PANTHER PTHR30106 4 333 7.2E-84 T 23-04-2016 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 RPE_RS08990 d833ff378791eff51c24c9096e020c73 338 PANTHER PTHR30106:SF2 4 333 7.2E-84 T 23-04-2016 RPE_RS20135 a7ef85899e563bdd83bfa3a432686562 171 SUPERFAMILY SSF51306 32 166 1.15E-23 T 23-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C RPE_RS20135 a7ef85899e563bdd83bfa3a432686562 171 Gene3D G3DSA:2.10.109.10 129 167 4.3E-11 T 23-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain RPE_RS20135 a7ef85899e563bdd83bfa3a432686562 171 Gene3D G3DSA:2.10.109.10 35 91 4.3E-11 T 23-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain RPE_RS20135 a7ef85899e563bdd83bfa3a432686562 171 Pfam PF10502 Signal peptidase, peptidase S26 30 167 2.8E-55 T 23-04-2016 IPR019533 Peptidase S26 RPE_RS06810 b5fbba43e16c0eb52c9cd843231fb457 477 Gene3D G3DSA:1.20.1250.20 36 227 7.3E-6 T 23-04-2016 RPE_RS06810 b5fbba43e16c0eb52c9cd843231fb457 477 Gene3D G3DSA:1.20.1250.20 263 460 5.9E-9 T 23-04-2016 RPE_RS06810 b5fbba43e16c0eb52c9cd843231fb457 477 SUPERFAMILY SSF103473 35 460 1.23E-22 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS06810 b5fbba43e16c0eb52c9cd843231fb457 477 PANTHER PTHR23538 12 477 3.0E-65 T 23-04-2016 RPE_RS06810 b5fbba43e16c0eb52c9cd843231fb457 477 Pfam PF03209 PUCC protein 55 458 2.4E-142 T 23-04-2016 IPR004896 PucC-related RPE_RS06810 b5fbba43e16c0eb52c9cd843231fb457 477 PIRSF PIRSF016565 16 470 1.3E-120 T 23-04-2016 IPR026036 PucC protein RPE_RS01805 e9fcad298392c68eaad40834ac78c427 512 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 404 502 6.1E-30 T 23-04-2016 IPR025158 Mg chelatase-related protein, C-terminal domain RPE_RS01805 e9fcad298392c68eaad40834ac78c427 512 Pfam PF13541 Subunit ChlI of Mg-chelatase 20 139 1.3E-40 T 23-04-2016 RPE_RS01805 e9fcad298392c68eaad40834ac78c427 512 SUPERFAMILY SSF54211 8 169 2.24E-29 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RPE_RS01805 e9fcad298392c68eaad40834ac78c427 512 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 9 502 5.9E-154 T 23-04-2016 IPR004482 Mg chelatase-related protein RPE_RS01805 e9fcad298392c68eaad40834ac78c427 512 SMART SM00382 209 393 2.5E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS01805 e9fcad298392c68eaad40834ac78c427 512 SUPERFAMILY SSF52540 189 502 1.2E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01805 e9fcad298392c68eaad40834ac78c427 512 PANTHER PTHR32039 1 504 3.6E-233 T 23-04-2016 RPE_RS01805 e9fcad298392c68eaad40834ac78c427 512 Gene3D G3DSA:3.40.50.300 189 390 5.7E-50 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01805 e9fcad298392c68eaad40834ac78c427 512 PANTHER PTHR32039:SF7 1 504 3.6E-233 T 23-04-2016 IPR004482 Mg chelatase-related protein RPE_RS01805 e9fcad298392c68eaad40834ac78c427 512 Gene3D G3DSA:3.30.230.10 5 165 3.7E-26 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RPE_RS01805 e9fcad298392c68eaad40834ac78c427 512 Pfam PF01078 Magnesium chelatase, subunit ChlI 189 396 1.1E-92 T 23-04-2016 IPR000523 Magnesium chelatase ChlI domain RPE_RS21760 fea69234ef8395a4d1f5d749d3f84d18 542 PANTHER PTHR24096 1 536 4.0E-269 T 23-04-2016 RPE_RS21760 fea69234ef8395a4d1f5d749d3f84d18 542 PANTHER PTHR24096:SF53 1 536 4.0E-269 T 23-04-2016 RPE_RS21760 fea69234ef8395a4d1f5d749d3f84d18 542 Pfam PF00501 AMP-binding enzyme 25 438 3.5E-85 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS21760 fea69234ef8395a4d1f5d749d3f84d18 542 Gene3D G3DSA:3.40.50.980 187 339 4.9E-36 T 23-04-2016 RPE_RS21760 fea69234ef8395a4d1f5d749d3f84d18 542 Gene3D G3DSA:3.40.50.980 12 186 5.3E-30 T 23-04-2016 RPE_RS21760 fea69234ef8395a4d1f5d749d3f84d18 542 Gene3D G3DSA:2.30.38.10 359 432 1.5E-13 T 23-04-2016 RPE_RS21760 fea69234ef8395a4d1f5d749d3f84d18 542 Gene3D G3DSA:3.30.300.30 433 531 6.4E-26 T 23-04-2016 RPE_RS21760 fea69234ef8395a4d1f5d749d3f84d18 542 ProSitePatterns PS00455 Putative AMP-binding domain signature. 182 193 - T 23-04-2016 IPR020845 AMP-binding, conserved site RPE_RS21760 fea69234ef8395a4d1f5d749d3f84d18 542 SUPERFAMILY SSF56801 5 534 1.44E-132 T 23-04-2016 RPE_RS21760 fea69234ef8395a4d1f5d749d3f84d18 542 Pfam PF13193 AMP-binding enzyme C-terminal domain 448 522 5.5E-17 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RPE_RS15425 6668fba20ce7b58c55c3f8affbaa0d42 426 SUPERFAMILY SSF56524 63 303 6.02E-74 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 RPE_RS15425 6668fba20ce7b58c55c3f8affbaa0d42 426 Gene3D G3DSA:2.60.40.650 301 414 3.6E-24 T 23-04-2016 IPR005066 Moybdenum cofactor oxidoreductase, dimerisation GO:0016491|GO:0030151|GO:0055114 RPE_RS15425 6668fba20ce7b58c55c3f8affbaa0d42 426 Gene3D G3DSA:3.90.420.10 83 300 8.2E-69 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 RPE_RS15425 6668fba20ce7b58c55c3f8affbaa0d42 426 PANTHER PTHR19372:SF2 45 423 2.4E-101 T 23-04-2016 RPE_RS15425 6668fba20ce7b58c55c3f8affbaa0d42 426 Pfam PF03404 Mo-co oxidoreductase dimerisation domain 296 410 4.0E-18 T 23-04-2016 IPR005066 Moybdenum cofactor oxidoreductase, dimerisation GO:0016491|GO:0030151|GO:0055114 RPE_RS15425 6668fba20ce7b58c55c3f8affbaa0d42 426 TIGRFAM TIGR04555 sulfite_DH_soxC: sulfite dehydrogenase 12 423 1.5E-190 T 23-04-2016 IPR030835 Sulfite dehydrogenase SoxC RPE_RS15425 6668fba20ce7b58c55c3f8affbaa0d42 426 SUPERFAMILY SSF81296 299 415 1.19E-28 T 23-04-2016 IPR014756 Immunoglobulin E-set RPE_RS15425 6668fba20ce7b58c55c3f8affbaa0d42 426 PANTHER PTHR19372 45 423 2.4E-101 T 23-04-2016 RPE_RS15425 6668fba20ce7b58c55c3f8affbaa0d42 426 PRINTS PR00407 Eukaryotic molybdopterin domain signature 224 240 6.9E-18 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 RPE_RS15425 6668fba20ce7b58c55c3f8affbaa0d42 426 PRINTS PR00407 Eukaryotic molybdopterin domain signature 241 254 6.9E-18 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 RPE_RS15425 6668fba20ce7b58c55c3f8affbaa0d42 426 PRINTS PR00407 Eukaryotic molybdopterin domain signature 153 164 6.9E-18 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 RPE_RS15425 6668fba20ce7b58c55c3f8affbaa0d42 426 PRINTS PR00407 Eukaryotic molybdopterin domain signature 335 347 6.9E-18 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 RPE_RS15425 6668fba20ce7b58c55c3f8affbaa0d42 426 PRINTS PR00407 Eukaryotic molybdopterin domain signature 101 117 6.9E-18 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 RPE_RS15425 6668fba20ce7b58c55c3f8affbaa0d42 426 PRINTS PR00407 Eukaryotic molybdopterin domain signature 257 270 6.9E-18 T 23-04-2016 IPR008335 Eukaryotic molybdopterin oxidoreductase GO:0016491|GO:0055114 RPE_RS15425 6668fba20ce7b58c55c3f8affbaa0d42 426 Pfam PF00174 Oxidoreductase molybdopterin binding domain 113 274 9.6E-51 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 RPE_RS06050 6d1844682303a0bd02699f4c65db5ca7 180 Pfam PF01584 CheW-like domain 27 162 8.3E-32 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS06050 6d1844682303a0bd02699f4c65db5ca7 180 PANTHER PTHR22617 24 176 1.4E-41 T 23-04-2016 RPE_RS06050 6d1844682303a0bd02699f4c65db5ca7 180 Gene3D G3DSA:2.30.30.40 102 151 2.0E-5 T 23-04-2016 RPE_RS06050 6d1844682303a0bd02699f4c65db5ca7 180 Gene3D G3DSA:2.40.50.180 65 101 8.4E-11 T 23-04-2016 RPE_RS06050 6d1844682303a0bd02699f4c65db5ca7 180 SMART SM00260 23 160 1.3E-38 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS06050 6d1844682303a0bd02699f4c65db5ca7 180 SUPERFAMILY SSF50341 21 162 6.41E-37 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS08080 2b7a19877286141918d2ced185cee090 160 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 93 159 3.2E-18 T 23-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 RPE_RS08080 2b7a19877286141918d2ced185cee090 160 SUPERFAMILY SSF54534 90 159 1.96E-14 T 23-04-2016 RPE_RS08080 2b7a19877286141918d2ced185cee090 160 PANTHER PTHR30437:SF6 1 159 9.6E-51 T 23-04-2016 RPE_RS08080 2b7a19877286141918d2ced185cee090 160 Gene3D G3DSA:3.10.50.30 88 159 9.3E-21 T 23-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 RPE_RS08080 2b7a19877286141918d2ced185cee090 160 PANTHER PTHR30437 1 159 9.6E-51 T 23-04-2016 RPE_RS01760 67033ed0e582a5908189d25f9e969a06 207 Gene3D G3DSA:2.30.22.10 132 189 5.3E-25 T 23-04-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 RPE_RS01760 67033ed0e582a5908189d25f9e969a06 207 Hamap MF_01151 Protein GrpE [grpE]. 8 188 18.997 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RPE_RS01760 67033ed0e582a5908189d25f9e969a06 207 SUPERFAMILY SSF51064 133 189 4.32E-18 T 23-04-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 RPE_RS01760 67033ed0e582a5908189d25f9e969a06 207 PRINTS PR00773 GrpE protein signature 167 186 2.3E-25 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RPE_RS01760 67033ed0e582a5908189d25f9e969a06 207 PRINTS PR00773 GrpE protein signature 52 68 2.3E-25 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RPE_RS01760 67033ed0e582a5908189d25f9e969a06 207 PRINTS PR00773 GrpE protein signature 140 155 2.3E-25 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RPE_RS01760 67033ed0e582a5908189d25f9e969a06 207 PRINTS PR00773 GrpE protein signature 80 95 2.3E-25 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RPE_RS01760 67033ed0e582a5908189d25f9e969a06 207 PANTHER PTHR21237 35 191 1.7E-67 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RPE_RS01760 67033ed0e582a5908189d25f9e969a06 207 ProSitePatterns PS01071 grpE protein signature. 143 186 - T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RPE_RS01760 67033ed0e582a5908189d25f9e969a06 207 Gene3D G3DSA:3.90.20.20 35 131 8.8E-29 T 23-04-2016 IPR013805 GrpE nucleotide exchange factor, coiled-coil RPE_RS01760 67033ed0e582a5908189d25f9e969a06 207 Pfam PF01025 GrpE 37 188 1.3E-47 T 23-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RPE_RS01760 67033ed0e582a5908189d25f9e969a06 207 SUPERFAMILY SSF58014 36 132 4.58E-24 T 23-04-2016 RPE_RS19120 eb5fc032e8738cfc793545c9ac4dcbaa 624 PANTHER PTHR24096 1 617 8.0E-242 T 23-04-2016 RPE_RS19120 eb5fc032e8738cfc793545c9ac4dcbaa 624 SUPERFAMILY SSF56801 39 578 2.49E-74 T 23-04-2016 RPE_RS19120 eb5fc032e8738cfc793545c9ac4dcbaa 624 Gene3D G3DSA:3.40.50.980 53 228 2.5E-21 T 23-04-2016 RPE_RS19120 eb5fc032e8738cfc793545c9ac4dcbaa 624 Pfam PF00501 AMP-binding enzyme 55 476 1.5E-54 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS19120 eb5fc032e8738cfc793545c9ac4dcbaa 624 Gene3D G3DSA:2.30.38.10 404 460 5.8E-11 T 23-04-2016 RPE_RS19120 eb5fc032e8738cfc793545c9ac4dcbaa 624 ProSitePatterns PS00455 Putative AMP-binding domain signature. 223 234 - T 23-04-2016 IPR020845 AMP-binding, conserved site RPE_RS19120 eb5fc032e8738cfc793545c9ac4dcbaa 624 PANTHER PTHR24096:SF252 1 617 8.0E-242 T 23-04-2016 RPE_RS19120 eb5fc032e8738cfc793545c9ac4dcbaa 624 Gene3D G3DSA:3.40.50.980 229 403 2.3E-21 T 23-04-2016 RPE_RS03775 0e8d70a3daf2320d11475013c9abd959 133 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 2 88 18.677 T 23-04-2016 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31|UniPathway: UPA00031 RPE_RS03775 0e8d70a3daf2320d11475013c9abd959 133 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 7 91 5.3E-15 T 23-04-2016 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31|UniPathway: UPA00031 RPE_RS03775 0e8d70a3daf2320d11475013c9abd959 133 SUPERFAMILY SSF101386 5 92 1.87E-21 T 23-04-2016 RPE_RS03775 0e8d70a3daf2320d11475013c9abd959 133 PANTHER PTHR21256 1 133 5.2E-50 T 23-04-2016 RPE_RS03775 0e8d70a3daf2320d11475013c9abd959 133 PANTHER PTHR21256:SF16 1 133 5.2E-50 T 23-04-2016 RPE_RS03775 0e8d70a3daf2320d11475013c9abd959 133 Gene3D G3DSA:3.40.50.300 22 93 1.1E-4 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS03775 0e8d70a3daf2320d11475013c9abd959 133 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 5 88 4.1E-26 T 23-04-2016 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31|UniPathway: UPA00031 RPE_RS20970 91fea0fad3835139790a4721bc875e14 64 Gene3D G3DSA:3.30.920.30 10 61 5.0E-9 T 23-04-2016 RPE_RS20970 91fea0fad3835139790a4721bc875e14 64 SUPERFAMILY SSF54786 8 61 5.49E-9 T 23-04-2016 RPE_RS20970 91fea0fad3835139790a4721bc875e14 64 Pfam PF07927 HicA toxin of bacterial toxin-antitoxin, 8 60 1.2E-8 T 23-04-2016 IPR012933 HicA mRNA interferase family GO:0003729 RPE_RS20795 ff78293f59ade5208e135d6e03d37d4d 530 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 148 175 - T 23-04-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 RPE_RS20795 ff78293f59ade5208e135d6e03d37d4d 530 Pfam PF01842 ACT domain 458 520 9.2E-8 T 23-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 RPE_RS20795 ff78293f59ade5208e135d6e03d37d4d 530 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 111 285 2.1E-63 T 23-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RPE_RS20795 ff78293f59ade5208e135d6e03d37d4d 530 SUPERFAMILY SSF51735 102 286 3.44E-60 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS20795 ff78293f59ade5208e135d6e03d37d4d 530 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 196 218 - T 23-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RPE_RS20795 ff78293f59ade5208e135d6e03d37d4d 530 SUPERFAMILY SSF52283 3 131 1.29E-37 T 23-04-2016 RPE_RS20795 ff78293f59ade5208e135d6e03d37d4d 530 Gene3D G3DSA:3.40.50.720 2 111 1.1E-39 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS20795 ff78293f59ade5208e135d6e03d37d4d 530 Gene3D G3DSA:3.30.70.260 449 527 9.9E-18 T 23-04-2016 RPE_RS20795 ff78293f59ade5208e135d6e03d37d4d 530 SUPERFAMILY SSF55021 447 527 1.83E-15 T 23-04-2016 RPE_RS20795 ff78293f59ade5208e135d6e03d37d4d 530 TIGRFAM TIGR01327 PGDH: phosphoglycerate dehydrogenase 6 528 5.0E-208 T 23-04-2016 IPR006236 D-3-phosphoglycerate dehydrogenase GO:0004617|GO:0006564 KEGG: 00260+1.1.1.95|KEGG: 00680+1.1.1.95|UniPathway: UPA00135 RPE_RS20795 ff78293f59ade5208e135d6e03d37d4d 530 PANTHER PTHR10996 1 361 3.4E-174 T 23-04-2016 RPE_RS20795 ff78293f59ade5208e135d6e03d37d4d 530 PANTHER PTHR10996:SF20 1 361 3.4E-174 T 23-04-2016 RPE_RS20795 ff78293f59ade5208e135d6e03d37d4d 530 Gene3D G3DSA:3.40.50.720 112 287 3.7E-68 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS20795 ff78293f59ade5208e135d6e03d37d4d 530 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 7 317 7.4E-37 T 23-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 RPE_RS20795 ff78293f59ade5208e135d6e03d37d4d 530 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 225 241 - T 23-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RPE_RS20795 ff78293f59ade5208e135d6e03d37d4d 530 SUPERFAMILY SSF143548 323 452 1.99E-38 T 23-04-2016 IPR029009 Allosteric substrate binding domain RPE_RS20795 ff78293f59ade5208e135d6e03d37d4d 530 Gene3D G3DSA:3.30.1330.90 322 448 5.1E-47 T 23-04-2016 IPR029009 Allosteric substrate binding domain RPE_RS22170 543cb5c058ff7868afe31274f8ccbbd9 370 Pfam PF01435 Peptidase family M48 98 323 3.7E-31 T 23-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RPE_RS22170 543cb5c058ff7868afe31274f8ccbbd9 370 Gene3D G3DSA:3.30.2010.10 94 179 1.7E-27 T 23-04-2016 RPE_RS22170 543cb5c058ff7868afe31274f8ccbbd9 370 PANTHER PTHR10120 22 344 3.7E-81 T 23-04-2016 RPE_RS22170 543cb5c058ff7868afe31274f8ccbbd9 370 PANTHER PTHR10120:SF19 22 344 3.7E-81 T 23-04-2016 RPE_RS15105 f76cdc5e6011c5477cca59a81d770d1c 171 Pfam PF13463 Winged helix DNA-binding domain 56 120 4.0E-11 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RPE_RS15105 f76cdc5e6011c5477cca59a81d770d1c 171 ProSitePatterns PS01117 MarR-type HTH domain signature. 86 120 - T 23-04-2016 IPR023187 Transcriptional regulator MarR-type, conserved site RPE_RS15105 f76cdc5e6011c5477cca59a81d770d1c 171 SUPERFAMILY SSF46785 20 163 8.73E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS15105 f76cdc5e6011c5477cca59a81d770d1c 171 SMART SM00347 48 149 6.9E-7 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RPE_RS15105 f76cdc5e6011c5477cca59a81d770d1c 171 Gene3D G3DSA:1.10.10.10 24 166 8.8E-27 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS23635 9f52b65b674d0be2a3aa2ceb3c7aba4c 127 Pfam PF05164 Cell division protein ZapA 8 114 2.0E-21 T 23-04-2016 IPR007838 Cell division protein ZapA-like RPE_RS23635 9f52b65b674d0be2a3aa2ceb3c7aba4c 127 SUPERFAMILY SSF102829 8 86 1.09E-20 T 23-04-2016 IPR007838 Cell division protein ZapA-like RPE_RS23635 9f52b65b674d0be2a3aa2ceb3c7aba4c 127 PANTHER PTHR34981 4 127 6.6E-23 T 23-04-2016 RPE_RS23635 9f52b65b674d0be2a3aa2ceb3c7aba4c 127 PANTHER PTHR34981:SF1 4 127 6.6E-23 T 23-04-2016 RPE_RS21485 e4a2fa89ebb6cf64712e548fde16e30b 512 Gene3D G3DSA:3.40.50.970 1 177 2.2E-40 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS21485 e4a2fa89ebb6cf64712e548fde16e30b 512 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 1 164 2.9E-31 T 23-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RPE_RS21485 e4a2fa89ebb6cf64712e548fde16e30b 512 PANTHER PTHR18968 1 512 2.2E-273 T 23-04-2016 RPE_RS21485 e4a2fa89ebb6cf64712e548fde16e30b 512 PANTHER PTHR18968:SF86 1 512 2.2E-273 T 23-04-2016 RPE_RS21485 e4a2fa89ebb6cf64712e548fde16e30b 512 SUPERFAMILY SSF52518 1 167 1.37E-35 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS21485 e4a2fa89ebb6cf64712e548fde16e30b 512 SUPERFAMILY SSF52518 334 512 3.93E-43 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS21485 e4a2fa89ebb6cf64712e548fde16e30b 512 Gene3D G3DSA:3.40.50.970 330 512 6.3E-46 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS21485 e4a2fa89ebb6cf64712e548fde16e30b 512 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 374 510 8.6E-28 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RPE_RS01845 4ad16afea94e4d7b1a897b2fabb8ed8d 216 SUPERFAMILY SSF52317 3 205 2.37E-51 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RPE_RS01845 4ad16afea94e4d7b1a897b2fabb8ed8d 216 PANTHER PTHR21235:SF1 3 216 2.0E-77 T 23-04-2016 RPE_RS01845 4ad16afea94e4d7b1a897b2fabb8ed8d 216 PIRSF PIRSF000495 1 216 5.0E-65 T 23-04-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 UniPathway: UPA00031 RPE_RS01845 4ad16afea94e4d7b1a897b2fabb8ed8d 216 PANTHER PTHR21235 3 216 2.0E-77 T 23-04-2016 RPE_RS01845 4ad16afea94e4d7b1a897b2fabb8ed8d 216 Pfam PF00117 Glutamine amidotransferase class-I 6 202 3.8E-18 T 23-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 RPE_RS01845 4ad16afea94e4d7b1a897b2fabb8ed8d 216 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 3 213 4.2E-60 T 23-04-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 UniPathway: UPA00031 RPE_RS01845 4ad16afea94e4d7b1a897b2fabb8ed8d 216 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 2 214 32.8 T 23-04-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 UniPathway: UPA00031 RPE_RS01845 4ad16afea94e4d7b1a897b2fabb8ed8d 216 Gene3D G3DSA:3.40.50.880 2 214 4.9E-65 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RPE_RS13965 d9db50726efccb6cda634006f62814e6 939 Gene3D G3DSA:3.20.20.80 51 295 4.0E-30 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RPE_RS13965 d9db50726efccb6cda634006f62814e6 939 Pfam PF13641 Glycosyltransferase like family 2 462 691 7.8E-33 T 23-04-2016 RPE_RS13965 d9db50726efccb6cda634006f62814e6 939 PANTHER PTHR16631 38 306 6.1E-51 T 23-04-2016 RPE_RS13965 d9db50726efccb6cda634006f62814e6 939 Gene3D G3DSA:3.90.550.10 462 706 9.1E-31 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS13965 d9db50726efccb6cda634006f62814e6 939 SUPERFAMILY SSF51445 36 296 4.65E-50 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RPE_RS13965 d9db50726efccb6cda634006f62814e6 939 SUPERFAMILY SSF53448 459 706 1.05E-46 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS03670 d5bc5a4b740275a87afd7422c23ec846 308 PANTHER PTHR12715:SF4 9 295 6.4E-68 T 23-04-2016 RPE_RS03670 d5bc5a4b740275a87afd7422c23ec846 308 PANTHER PTHR12715 9 295 6.4E-68 T 23-04-2016 RPE_RS03670 d5bc5a4b740275a87afd7422c23ec846 308 Pfam PF00892 EamA-like transporter family 15 145 4.3E-25 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RPE_RS03670 d5bc5a4b740275a87afd7422c23ec846 308 Pfam PF00892 EamA-like transporter family 157 292 2.5E-14 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RPE_RS03670 d5bc5a4b740275a87afd7422c23ec846 308 SUPERFAMILY SSF103481 192 294 1.23E-14 T 23-04-2016 RPE_RS03670 d5bc5a4b740275a87afd7422c23ec846 308 SUPERFAMILY SSF103481 47 148 2.35E-15 T 23-04-2016 RPE_RS10575 14d0b966098c62f2ac98a019c866cb0b 374 SUPERFAMILY SSF53756 6 364 3.14E-99 T 23-04-2016 RPE_RS10575 14d0b966098c62f2ac98a019c866cb0b 374 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 7 143 4.0E-26 T 23-04-2016 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RPE_RS10575 14d0b966098c62f2ac98a019c866cb0b 374 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 6 359 7.0E-76 T 23-04-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RPE_RS10575 14d0b966098c62f2ac98a019c866cb0b 374 PANTHER PTHR21015:SF22 6 365 1.9E-87 T 23-04-2016 RPE_RS10575 14d0b966098c62f2ac98a019c866cb0b 374 Gene3D G3DSA:3.40.50.2000 6 201 2.8E-46 T 23-04-2016 RPE_RS10575 14d0b966098c62f2ac98a019c866cb0b 374 Gene3D G3DSA:3.40.50.2000 262 340 1.3E-8 T 23-04-2016 RPE_RS10575 14d0b966098c62f2ac98a019c866cb0b 374 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 7 364 30.184 T 23-04-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RPE_RS10575 14d0b966098c62f2ac98a019c866cb0b 374 PANTHER PTHR21015 6 365 1.9E-87 T 23-04-2016 RPE_RS10575 14d0b966098c62f2ac98a019c866cb0b 374 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 190 355 6.0E-33 T 23-04-2016 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RPE_RS19375 02ef7c4ed51a9dcf416ef9a36acd0818 958 Pfam PF13244 Domain of unknown function (DUF4040) 610 674 5.3E-17 T 23-04-2016 IPR025383 Domain of unknown function DUF4040 RPE_RS19375 02ef7c4ed51a9dcf416ef9a36acd0818 958 PANTHER PTHR22773 1 542 8.4E-196 T 23-04-2016 RPE_RS19375 02ef7c4ed51a9dcf416ef9a36acd0818 958 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 306 318 1.2E-40 T 23-04-2016 RPE_RS19375 02ef7c4ed51a9dcf416ef9a36acd0818 958 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 75 100 1.2E-40 T 23-04-2016 RPE_RS19375 02ef7c4ed51a9dcf416ef9a36acd0818 958 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 414 433 1.2E-40 T 23-04-2016 RPE_RS19375 02ef7c4ed51a9dcf416ef9a36acd0818 958 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 238 264 1.2E-40 T 23-04-2016 RPE_RS19375 02ef7c4ed51a9dcf416ef9a36acd0818 958 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 150 171 1.2E-40 T 23-04-2016 RPE_RS19375 02ef7c4ed51a9dcf416ef9a36acd0818 958 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 216 237 1.2E-40 T 23-04-2016 RPE_RS19375 02ef7c4ed51a9dcf416ef9a36acd0818 958 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 103 123 1.2E-40 T 23-04-2016 RPE_RS19375 02ef7c4ed51a9dcf416ef9a36acd0818 958 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 61 113 7.7E-10 T 23-04-2016 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal RPE_RS19375 02ef7c4ed51a9dcf416ef9a36acd0818 958 Pfam PF00361 Proton-conducting membrane transporter 126 405 4.6E-65 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RPE_RS19375 02ef7c4ed51a9dcf416ef9a36acd0818 958 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 791 913 4.5E-33 T 23-04-2016 IPR007182 Na+/H+ antiporter MnhB subunit-related protein RPE_RS19375 02ef7c4ed51a9dcf416ef9a36acd0818 958 PANTHER PTHR22773:SF46 1 542 8.4E-196 T 23-04-2016 RPE_RS01270 04c96c8d36f9647f13fc23d2b7e52a46 319 PANTHER PTHR30346:SF15 2 317 4.7E-94 T 23-04-2016 RPE_RS01270 04c96c8d36f9647f13fc23d2b7e52a46 319 Gene3D G3DSA:3.40.190.10 177 273 1.8E-26 T 23-04-2016 RPE_RS01270 04c96c8d36f9647f13fc23d2b7e52a46 319 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 5.0E-20 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS01270 04c96c8d36f9647f13fc23d2b7e52a46 319 Gene3D G3DSA:3.40.190.10 91 176 7.3E-17 T 23-04-2016 RPE_RS01270 04c96c8d36f9647f13fc23d2b7e52a46 319 SUPERFAMILY SSF46785 1 111 2.54E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS01270 04c96c8d36f9647f13fc23d2b7e52a46 319 SUPERFAMILY SSF53850 89 301 8.69E-39 T 23-04-2016 RPE_RS01270 04c96c8d36f9647f13fc23d2b7e52a46 319 Gene3D G3DSA:1.10.10.10 1 84 3.6E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS01270 04c96c8d36f9647f13fc23d2b7e52a46 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 9.3E-7 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS01270 04c96c8d36f9647f13fc23d2b7e52a46 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 9.3E-7 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS01270 04c96c8d36f9647f13fc23d2b7e52a46 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 9.3E-7 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS01270 04c96c8d36f9647f13fc23d2b7e52a46 319 PANTHER PTHR30346 2 317 4.7E-94 T 23-04-2016 RPE_RS01270 04c96c8d36f9647f13fc23d2b7e52a46 319 Pfam PF03466 LysR substrate binding domain 89 299 3.0E-44 T 23-04-2016 IPR005119 LysR, substrate-binding RPE_RS04135 cd9b6c1c1540ad5fe7b73ac75b8ee8f7 566 PRINTS PR00344 Bacterial sensor protein C-terminal signature 517 535 2.4E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS04135 cd9b6c1c1540ad5fe7b73ac75b8ee8f7 566 PRINTS PR00344 Bacterial sensor protein C-terminal signature 483 497 2.4E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS04135 cd9b6c1c1540ad5fe7b73ac75b8ee8f7 566 PRINTS PR00344 Bacterial sensor protein C-terminal signature 501 511 2.4E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS04135 cd9b6c1c1540ad5fe7b73ac75b8ee8f7 566 Gene3D G3DSA:3.30.565.10 383 565 1.3E-38 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS04135 cd9b6c1c1540ad5fe7b73ac75b8ee8f7 566 SMART SM00388 332 397 2.9E-16 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS04135 cd9b6c1c1540ad5fe7b73ac75b8ee8f7 566 Gene3D G3DSA:1.10.287.130 323 382 5.0E-15 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS04135 cd9b6c1c1540ad5fe7b73ac75b8ee8f7 566 SMART SM00304 276 331 4.8E-7 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS04135 cd9b6c1c1540ad5fe7b73ac75b8ee8f7 566 Pfam PF00672 HAMP domain 259 327 6.7E-12 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS04135 cd9b6c1c1540ad5fe7b73ac75b8ee8f7 566 SMART SM00387 446 566 2.2E-31 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS04135 cd9b6c1c1540ad5fe7b73ac75b8ee8f7 566 PANTHER PTHR24423:SF379 112 182 8.1E-63 T 23-04-2016 RPE_RS04135 cd9b6c1c1540ad5fe7b73ac75b8ee8f7 566 PANTHER PTHR24423:SF379 270 566 8.1E-63 T 23-04-2016 RPE_RS04135 cd9b6c1c1540ad5fe7b73ac75b8ee8f7 566 PANTHER PTHR24423 112 182 8.1E-63 T 23-04-2016 RPE_RS04135 cd9b6c1c1540ad5fe7b73ac75b8ee8f7 566 PANTHER PTHR24423 270 566 8.1E-63 T 23-04-2016 RPE_RS04135 cd9b6c1c1540ad5fe7b73ac75b8ee8f7 566 Pfam PF00512 His Kinase A (phospho-acceptor) domain 335 396 5.6E-14 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS04135 cd9b6c1c1540ad5fe7b73ac75b8ee8f7 566 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 447 565 2.2E-21 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS04135 cd9b6c1c1540ad5fe7b73ac75b8ee8f7 566 Pfam PF13756 Stimulus-sensing domain 107 216 9.1E-40 T 23-04-2016 IPR025919 Stimulus-sensing domain RPE_RS04135 cd9b6c1c1540ad5fe7b73ac75b8ee8f7 566 SUPERFAMILY SSF55874 387 564 5.24E-35 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS04135 cd9b6c1c1540ad5fe7b73ac75b8ee8f7 566 Pfam PF13755 Sensor N-terminal transmembrane domain 9 82 1.0E-31 T 23-04-2016 IPR025908 Sensor N-terminal transmembrane domain RPE_RS04135 cd9b6c1c1540ad5fe7b73ac75b8ee8f7 566 SUPERFAMILY SSF47384 315 396 1.77E-16 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS14420 ca7804c2e9182c815bfc85e483fd4a12 287 SUPERFAMILY SSF53850 89 282 1.69E-28 T 23-04-2016 RPE_RS14420 ca7804c2e9182c815bfc85e483fd4a12 287 Gene3D G3DSA:1.10.10.10 3 85 2.6E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS14420 ca7804c2e9182c815bfc85e483fd4a12 287 PANTHER PTHR30579:SF0 1 287 4.7E-74 T 23-04-2016 RPE_RS14420 ca7804c2e9182c815bfc85e483fd4a12 287 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 4.9E-20 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS14420 ca7804c2e9182c815bfc85e483fd4a12 287 SUPERFAMILY SSF46785 3 110 2.5E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS14420 ca7804c2e9182c815bfc85e483fd4a12 287 Gene3D G3DSA:3.40.190.10 87 186 2.8E-20 T 23-04-2016 RPE_RS14420 ca7804c2e9182c815bfc85e483fd4a12 287 PANTHER PTHR30579 1 287 4.7E-74 T 23-04-2016 RPE_RS14420 ca7804c2e9182c815bfc85e483fd4a12 287 Pfam PF03466 LysR substrate binding domain 89 272 9.6E-30 T 23-04-2016 IPR005119 LysR, substrate-binding RPE_RS14420 ca7804c2e9182c815bfc85e483fd4a12 287 Gene3D G3DSA:3.40.190.10 187 236 1.7E-8 T 23-04-2016 RPE_RS14420 ca7804c2e9182c815bfc85e483fd4a12 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 3.4E-6 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS14420 ca7804c2e9182c815bfc85e483fd4a12 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 3.4E-6 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS14420 ca7804c2e9182c815bfc85e483fd4a12 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 3.4E-6 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS02365 197cf480497a25ac8a7097d08a1ad346 293 SUPERFAMILY SSF57716 239 293 2.28E-13 T 23-04-2016 RPE_RS02365 197cf480497a25ac8a7097d08a1ad346 293 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 128 5.7E-34 T 23-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RPE_RS02365 197cf480497a25ac8a7097d08a1ad346 293 PANTHER PTHR22993:SF15 1 293 9.3E-110 T 23-04-2016 RPE_RS02365 197cf480497a25ac8a7097d08a1ad346 293 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 145 240 4.0E-23 T 23-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 RPE_RS02365 197cf480497a25ac8a7097d08a1ad346 293 Gene3D G3DSA:1.10.8.50 146 293 9.3E-47 T 23-04-2016 RPE_RS02365 197cf480497a25ac8a7097d08a1ad346 293 PANTHER PTHR22993 1 293 9.3E-110 T 23-04-2016 RPE_RS02365 197cf480497a25ac8a7097d08a1ad346 293 Pfam PF06827 Zinc finger found in FPG and IleRS 264 293 4.1E-6 T 23-04-2016 IPR010663 Zinc finger, FPG/IleRS-type RPE_RS02365 197cf480497a25ac8a7097d08a1ad346 293 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 293 42.325 T 23-04-2016 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 RPE_RS02365 197cf480497a25ac8a7097d08a1ad346 293 SUPERFAMILY SSF46946 145 239 1.62E-28 T 23-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 RPE_RS02365 197cf480497a25ac8a7097d08a1ad346 293 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 292 6.3E-80 T 23-04-2016 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 RPE_RS02365 197cf480497a25ac8a7097d08a1ad346 293 Gene3D G3DSA:3.20.190.10 2 145 2.8E-37 T 23-04-2016 RPE_RS02365 197cf480497a25ac8a7097d08a1ad346 293 SMART SM01232 145 243 2.0E-46 T 23-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 RPE_RS02365 197cf480497a25ac8a7097d08a1ad346 293 SUPERFAMILY SSF81624 2 154 7.85E-36 T 23-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RPE_RS02365 197cf480497a25ac8a7097d08a1ad346 293 SMART SM00898 2 129 9.8E-56 T 23-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RPE_RS02990 2090644571ed8d2989051adb893b314e 153 Gene3D G3DSA:1.10.10.10 1 133 8.2E-27 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS02990 2090644571ed8d2989051adb893b314e 153 PANTHER PTHR33221 2 149 4.9E-22 T 23-04-2016 RPE_RS02990 2090644571ed8d2989051adb893b314e 153 SUPERFAMILY SSF46785 3 128 4.37E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS02990 2090644571ed8d2989051adb893b314e 153 Pfam PF02082 Transcriptional regulator 1 80 1.6E-22 T 23-04-2016 IPR000944 Transcription regulator Rrf2-type RPE_RS02990 2090644571ed8d2989051adb893b314e 153 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 128 8.1E-35 T 23-04-2016 IPR000944 Transcription regulator Rrf2-type RPE_RS02990 2090644571ed8d2989051adb893b314e 153 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 48 66 - T 23-04-2016 IPR030489 Transcription regulator Rrf2-type, conserved site RPE_RS24310 178e41fe21279404dbd54c5e91d723c3 538 SUPERFAMILY SSF51445 8 453 2.02E-147 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RPE_RS24310 178e41fe21279404dbd54c5e91d723c3 538 Pfam PF11941 Domain of unknown function (DUF3459) 439 521 4.0E-12 T 23-04-2016 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) RPE_RS24310 178e41fe21279404dbd54c5e91d723c3 538 PANTHER PTHR10357:SF167 432 488 2.3E-180 T 23-04-2016 RPE_RS24310 178e41fe21279404dbd54c5e91d723c3 538 PANTHER PTHR10357:SF167 6 400 2.3E-180 T 23-04-2016 RPE_RS24310 178e41fe21279404dbd54c5e91d723c3 538 SMART SM00642 17 395 6.5E-148 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RPE_RS24310 178e41fe21279404dbd54c5e91d723c3 538 Gene3D G3DSA:2.60.40.1180 458 530 7.1E-6 T 23-04-2016 IPR013780 Glycosyl hydrolase, all-beta RPE_RS24310 178e41fe21279404dbd54c5e91d723c3 538 PANTHER PTHR10357 432 488 2.3E-180 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RPE_RS24310 178e41fe21279404dbd54c5e91d723c3 538 PANTHER PTHR10357 6 400 2.3E-180 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RPE_RS24310 178e41fe21279404dbd54c5e91d723c3 538 Pfam PF00128 Alpha amylase, catalytic domain 32 368 1.4E-102 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RPE_RS24310 178e41fe21279404dbd54c5e91d723c3 538 Gene3D G3DSA:3.20.20.80 180 454 8.6E-117 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RPE_RS24310 178e41fe21279404dbd54c5e91d723c3 538 Gene3D G3DSA:3.20.20.80 7 108 8.6E-117 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RPE_RS24310 178e41fe21279404dbd54c5e91d723c3 538 Gene3D G3DSA:3.90.400.10 109 179 1.7E-33 T 23-04-2016 RPE_RS24310 178e41fe21279404dbd54c5e91d723c3 538 SUPERFAMILY SSF51011 456 524 5.23E-5 T 23-04-2016 RPE_RS17100 a0fdca005abd01a2e177b1beb2f79ed1 307 Pfam PF09140 ATPase MipZ 14 276 2.2E-111 T 23-04-2016 IPR015223 ATPase MipZ RPE_RS17100 a0fdca005abd01a2e177b1beb2f79ed1 307 PANTHER PTHR13696 1 152 1.3E-49 T 23-04-2016 RPE_RS17100 a0fdca005abd01a2e177b1beb2f79ed1 307 SUPERFAMILY SSF52540 13 243 1.9E-23 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS17100 a0fdca005abd01a2e177b1beb2f79ed1 307 Gene3D G3DSA:3.40.50.300 10 153 6.4E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS17100 a0fdca005abd01a2e177b1beb2f79ed1 307 PANTHER PTHR13696:SF54 1 152 1.3E-49 T 23-04-2016 RPE_RS23000 4755903118713723c4444733a9e75ee1 309 PANTHER PTHR26402:SF50 9 140 2.2E-58 T 23-04-2016 RPE_RS23000 4755903118713723c4444733a9e75ee1 309 PANTHER PTHR26402:SF50 243 295 2.2E-58 T 23-04-2016 RPE_RS23000 4755903118713723c4444733a9e75ee1 309 SMART SM00448 9 122 4.3E-34 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS23000 4755903118713723c4444733a9e75ee1 309 Gene3D G3DSA:1.10.10.10 253 302 4.9E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS23000 4755903118713723c4444733a9e75ee1 309 Pfam PF00072 Response regulator receiver domain 12 123 3.4E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS23000 4755903118713723c4444733a9e75ee1 309 SUPERFAMILY SSF46894 243 302 5.44E-19 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RPE_RS23000 4755903118713723c4444733a9e75ee1 309 Pfam PF00196 Bacterial regulatory proteins, luxR family 247 301 2.8E-19 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS23000 4755903118713723c4444733a9e75ee1 309 PANTHER PTHR26402 9 140 2.2E-58 T 23-04-2016 RPE_RS23000 4755903118713723c4444733a9e75ee1 309 PANTHER PTHR26402 243 295 2.2E-58 T 23-04-2016 RPE_RS23000 4755903118713723c4444733a9e75ee1 309 SUPERFAMILY SSF52172 12 141 2.85E-37 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS23000 4755903118713723c4444733a9e75ee1 309 Gene3D G3DSA:3.40.50.2300 12 133 2.0E-35 T 23-04-2016 RPE_RS23000 4755903118713723c4444733a9e75ee1 309 Gene3D G3DSA:3.40.50.2300 232 252 2.0E-35 T 23-04-2016 RPE_RS23000 4755903118713723c4444733a9e75ee1 309 SMART SM00421 244 301 1.1E-23 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS23000 4755903118713723c4444733a9e75ee1 309 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 261 277 2.0E-12 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS23000 4755903118713723c4444733a9e75ee1 309 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 247 261 2.0E-12 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS23000 4755903118713723c4444733a9e75ee1 309 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 277 289 2.0E-12 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS01970 2871a55f68d8058ebca6257166da5ab5 202 Gene3D G3DSA:2.40.440.10 54 86 7.0E-4 T 23-04-2016 RPE_RS01970 2871a55f68d8058ebca6257166da5ab5 202 Gene3D G3DSA:2.40.440.10 134 202 7.0E-4 T 23-04-2016 RPE_RS01970 2871a55f68d8058ebca6257166da5ab5 202 PANTHER PTHR38589:SF1 24 201 4.3E-54 T 23-04-2016 RPE_RS01970 2871a55f68d8058ebca6257166da5ab5 202 SUPERFAMILY SSF141523 138 202 4.19E-5 T 23-04-2016 RPE_RS01970 2871a55f68d8058ebca6257166da5ab5 202 SUPERFAMILY SSF141523 55 90 4.19E-5 T 23-04-2016 RPE_RS01970 2871a55f68d8058ebca6257166da5ab5 202 PANTHER PTHR38589 24 201 4.3E-54 T 23-04-2016 RPE_RS01970 2871a55f68d8058ebca6257166da5ab5 202 Pfam PF03734 L,D-transpeptidase catalytic domain 54 201 1.2E-10 T 23-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 RPE_RS01260 4e22f2735a5cafea3fd08d53c781fd7b 366 Pfam PF13808 DDE_Tnp_1-associated 7 91 1.8E-27 T 23-04-2016 IPR032806 H repeat-associated protein, N-terminal RPE_RS01260 4e22f2735a5cafea3fd08d53c781fd7b 366 Pfam PF01609 Transposase DDE domain 104 334 6.9E-20 T 23-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 RPE_RS01260 4e22f2735a5cafea3fd08d53c781fd7b 366 PANTHER PTHR30298 1 366 1.5E-70 T 23-04-2016 RPE_RS12700 8be992980ec4dad61553075c6899e91b 162 SUPERFAMILY SSF54862 35 146 5.86E-29 T 23-04-2016 RPE_RS12700 8be992980ec4dad61553075c6899e91b 162 PANTHER PTHR10849:SF20 6 162 2.2E-105 T 23-04-2016 RPE_RS12700 8be992980ec4dad61553075c6899e91b 162 Gene3D G3DSA:1.10.1060.10 14 139 1.5E-24 T 23-04-2016 RPE_RS12700 8be992980ec4dad61553075c6899e91b 162 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 9 146 27.607 T 23-04-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 RPE_RS12700 8be992980ec4dad61553075c6899e91b 162 Pfam PF12838 4Fe-4S dicluster domain 61 116 2.9E-13 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RPE_RS12700 8be992980ec4dad61553075c6899e91b 162 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 19 140 1.3E-48 T 23-04-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 RPE_RS12700 8be992980ec4dad61553075c6899e91b 162 PANTHER PTHR10849 6 162 2.2E-105 T 23-04-2016 RPE_RS12700 8be992980ec4dad61553075c6899e91b 162 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 62 73 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RPE_RS12700 8be992980ec4dad61553075c6899e91b 162 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 102 113 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RPE_RS16155 1da1dc066eba03defb512e102e5ffe7f 543 PANTHER PTHR23408 17 536 1.2E-195 T 23-04-2016 RPE_RS16155 1da1dc066eba03defb512e102e5ffe7f 543 SUPERFAMILY SSF51703 12 532 7.59E-174 T 23-04-2016 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0008152|GO:0031419 RPE_RS16155 1da1dc066eba03defb512e102e5ffe7f 543 Gene3D G3DSA:3.20.20.240 17 531 1.0E-184 T 23-04-2016 IPR014348 Cobalamin (vitamin B12)-dependent enzyme, catalytic subdomain GO:0008152|GO:0016866|GO:0031419 RPE_RS16155 1da1dc066eba03defb512e102e5ffe7f 543 Pfam PF01642 Methylmalonyl-CoA mutase 17 530 3.4E-183 T 23-04-2016 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0008152|GO:0016866|GO:0031419 RPE_RS16155 1da1dc066eba03defb512e102e5ffe7f 543 PANTHER PTHR23408:SF7 17 536 1.2E-195 T 23-04-2016 RPE_RS16155 1da1dc066eba03defb512e102e5ffe7f 543 TIGRFAM TIGR00641 acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain 17 536 8.8E-177 T 23-04-2016 IPR006098 Methylmalonyl-CoA mutase, alpha chain, catalytic GO:0004494|GO:0008152|GO:0031419 RPE_RS18575 eecf8dac7c7fd9eebfdfbb4752aee7a9 245 TIGRFAM TIGR01198 pgl: 6-phosphogluconolactonase 31 239 1.6E-56 T 23-04-2016 IPR005900 6-phosphogluconolactonase, DevB-type GO:0005975|GO:0006098|GO:0017057 KEGG: 00030+3.1.1.31|UniPathway: UPA00115 RPE_RS18575 eecf8dac7c7fd9eebfdfbb4752aee7a9 245 SUPERFAMILY SSF100950 10 239 2.81E-59 T 23-04-2016 RPE_RS18575 eecf8dac7c7fd9eebfdfbb4752aee7a9 245 Gene3D G3DSA:3.40.50.1360 8 239 1.9E-65 T 23-04-2016 RPE_RS18575 eecf8dac7c7fd9eebfdfbb4752aee7a9 245 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 13 232 5.4E-65 T 23-04-2016 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 RPE_RS18575 eecf8dac7c7fd9eebfdfbb4752aee7a9 245 PANTHER PTHR11054 7 238 9.5E-65 T 23-04-2016 RPE_RS10400 4f3ba02af3146faa41d8ce7621788ab7 358 PANTHER PTHR13847:SF180 34 356 7.1E-27 T 23-04-2016 RPE_RS10400 4f3ba02af3146faa41d8ce7621788ab7 358 Pfam PF01266 FAD dependent oxidoreductase 34 341 9.2E-42 T 23-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RPE_RS10400 4f3ba02af3146faa41d8ce7621788ab7 358 Gene3D G3DSA:3.30.9.10 214 306 2.4E-19 T 23-04-2016 RPE_RS10400 4f3ba02af3146faa41d8ce7621788ab7 358 PANTHER PTHR13847 34 356 7.1E-27 T 23-04-2016 RPE_RS10400 4f3ba02af3146faa41d8ce7621788ab7 358 Gene3D G3DSA:3.50.50.60 30 106 2.6E-18 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS10400 4f3ba02af3146faa41d8ce7621788ab7 358 Gene3D G3DSA:3.50.50.60 156 213 2.6E-18 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS10400 4f3ba02af3146faa41d8ce7621788ab7 358 Gene3D G3DSA:3.50.50.60 308 349 2.6E-18 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS10400 4f3ba02af3146faa41d8ce7621788ab7 358 SUPERFAMILY SSF54373 218 306 7.72E-18 T 23-04-2016 RPE_RS10400 4f3ba02af3146faa41d8ce7621788ab7 358 SUPERFAMILY SSF51905 36 225 9.45E-27 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS10400 4f3ba02af3146faa41d8ce7621788ab7 358 SUPERFAMILY SSF51905 308 348 9.45E-27 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS04300 07485a53fe0e828fd088e3a445e6b020 186 Gene3D G3DSA:3.40.250.10 42 168 2.1E-12 T 23-04-2016 IPR001763 Rhodanese-like domain RPE_RS04300 07485a53fe0e828fd088e3a445e6b020 186 Pfam PF00581 Rhodanese-like domain 81 163 3.4E-5 T 23-04-2016 IPR001763 Rhodanese-like domain RPE_RS04300 07485a53fe0e828fd088e3a445e6b020 186 TIGRFAM TIGR03865 PQQ_CXXCW: PQQ-dependent catabolism-associated CXXCW motif protein 12 172 1.7E-71 T 23-04-2016 IPR022376 PQQ-dependent catabolism-associated CXXCW motif RPE_RS04300 07485a53fe0e828fd088e3a445e6b020 186 SUPERFAMILY SSF52821 42 173 1.06E-18 T 23-04-2016 IPR001763 Rhodanese-like domain RPE_RS23840 e55e2b3ed0150ea1f25c8b1d88bf50c7 248 PANTHER PTHR12532 1 240 1.4E-110 T 23-04-2016 IPR002876 Transcriptional regulator TACO1-like RPE_RS23840 e55e2b3ed0150ea1f25c8b1d88bf50c7 248 Pfam PF01709 Transcriptional regulator 5 236 6.6E-92 T 23-04-2016 IPR002876 Transcriptional regulator TACO1-like RPE_RS23840 e55e2b3ed0150ea1f25c8b1d88bf50c7 248 SUPERFAMILY SSF75625 3 245 8.5E-94 T 23-04-2016 IPR029072 YebC-like RPE_RS23840 e55e2b3ed0150ea1f25c8b1d88bf50c7 248 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 237 8.9E-96 T 23-04-2016 IPR002876 Transcriptional regulator TACO1-like RPE_RS23840 e55e2b3ed0150ea1f25c8b1d88bf50c7 248 Gene3D G3DSA:1.10.10.200 1 80 8.4E-35 T 23-04-2016 IPR017856 Integrase, N-terminal zinc-binding domain-like RPE_RS23840 e55e2b3ed0150ea1f25c8b1d88bf50c7 248 Gene3D G3DSA:3.30.1270.10 81 133 1.1E-40 T 23-04-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 RPE_RS23840 e55e2b3ed0150ea1f25c8b1d88bf50c7 248 Gene3D G3DSA:3.30.1270.10 211 246 1.1E-40 T 23-04-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 RPE_RS23840 e55e2b3ed0150ea1f25c8b1d88bf50c7 248 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 238 34.464 T 23-04-2016 IPR002876 Transcriptional regulator TACO1-like RPE_RS23840 e55e2b3ed0150ea1f25c8b1d88bf50c7 248 Gene3D G3DSA:3.30.70.980 134 204 6.8E-22 T 23-04-2016 IPR026564 Transcriptional regulator TACO1-like, domain 3 RPE_RS09835 26c4fc878e71170c84c69112c56c3c2d 425 PANTHER PTHR24023 253 403 1.9E-29 T 23-04-2016 RPE_RS09835 26c4fc878e71170c84c69112c56c3c2d 425 PANTHER PTHR24023 59 212 1.9E-29 T 23-04-2016 RPE_RS09835 26c4fc878e71170c84c69112c56c3c2d 425 Gene3D G3DSA:3.40.50.10540 2 215 4.9E-107 T 23-04-2016 IPR023606 CoA-transferase family III domain RPE_RS09835 26c4fc878e71170c84c69112c56c3c2d 425 Gene3D G3DSA:3.40.50.10540 326 416 4.9E-107 T 23-04-2016 IPR023606 CoA-transferase family III domain RPE_RS09835 26c4fc878e71170c84c69112c56c3c2d 425 SUPERFAMILY SSF89796 1 416 2.09E-124 T 23-04-2016 IPR023606 CoA-transferase family III domain RPE_RS09835 26c4fc878e71170c84c69112c56c3c2d 425 PANTHER PTHR24023:SF593 253 403 1.9E-29 T 23-04-2016 RPE_RS09835 26c4fc878e71170c84c69112c56c3c2d 425 PANTHER PTHR24023:SF593 59 212 1.9E-29 T 23-04-2016 RPE_RS09835 26c4fc878e71170c84c69112c56c3c2d 425 TIGRFAM TIGR03253 oxalate_frc: formyl-CoA transferase 2 415 5.7E-224 T 23-04-2016 IPR017659 Formyl-CoA:oxalate CoA-transferase GO:0008152|GO:0033608 MetaCyc: PWY-6695|UniPathway: UPA00540 RPE_RS09835 26c4fc878e71170c84c69112c56c3c2d 425 Gene3D G3DSA:3.30.1540.10 245 325 2.5E-27 T 23-04-2016 RPE_RS09835 26c4fc878e71170c84c69112c56c3c2d 425 Pfam PF02515 CoA-transferase family III 5 392 1.3E-100 T 23-04-2016 IPR003673 CoA-transferase family III GO:0003824 RPE_RS09835 26c4fc878e71170c84c69112c56c3c2d 425 Hamap MF_00742 Formyl-CoA:oxalate CoA-transferase [frc]. 1 416 65.245 T 23-04-2016 IPR017659 Formyl-CoA:oxalate CoA-transferase GO:0008152|GO:0033608 MetaCyc: PWY-6695|UniPathway: UPA00540 RPE_RS08115 7d5ed87f299ece7ba17f6d02033cf3c6 162 Pfam PF03061 Thioesterase superfamily 68 135 2.1E-11 T 23-04-2016 IPR006683 Thioesterase domain RPE_RS08115 7d5ed87f299ece7ba17f6d02033cf3c6 162 SUPERFAMILY SSF54637 27 151 1.53E-22 T 23-04-2016 IPR029069 HotDog domain RPE_RS08115 7d5ed87f299ece7ba17f6d02033cf3c6 162 PANTHER PTHR21660 47 129 1.3E-14 T 23-04-2016 RPE_RS08115 7d5ed87f299ece7ba17f6d02033cf3c6 162 Gene3D G3DSA:3.10.129.10 17 152 3.5E-47 T 23-04-2016 IPR029069 HotDog domain RPE_RS04395 181e62e89f84766fc5d88e9e3de9a073 258 PIRSF PIRSF015601 7 247 1.6E-47 T 23-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RPE_RS04395 181e62e89f84766fc5d88e9e3de9a073 258 SUPERFAMILY SSF88697 8 61 2.49E-13 T 23-04-2016 IPR015947 PUA-like domain RPE_RS04395 181e62e89f84766fc5d88e9e3de9a073 258 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 21 246 2.3E-31 T 23-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RPE_RS04395 181e62e89f84766fc5d88e9e3de9a073 258 SUPERFAMILY SSF75217 79 247 1.73E-42 T 23-04-2016 IPR029028 Alpha/beta knot methyltransferases RPE_RS04395 181e62e89f84766fc5d88e9e3de9a073 258 Pfam PF04452 RNA methyltransferase 24 242 2.0E-51 T 23-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RPE_RS04395 181e62e89f84766fc5d88e9e3de9a073 258 PANTHER PTHR30027 1 250 8.8E-65 T 23-04-2016 RPE_RS04395 181e62e89f84766fc5d88e9e3de9a073 258 PANTHER PTHR30027:SF3 1 250 8.8E-65 T 23-04-2016 RPE_RS04395 181e62e89f84766fc5d88e9e3de9a073 258 Gene3D G3DSA:3.40.1280.10 9 250 4.8E-64 T 23-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RPE_RS03625 688df67d28f3e36cf90ec0a3c8f5d895 587 Pfam PF04679 ATP dependent DNA ligase C terminal region 470 567 5.2E-10 T 23-04-2016 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 Reactome: REACT_216 RPE_RS03625 688df67d28f3e36cf90ec0a3c8f5d895 587 Gene3D G3DSA:3.30.1490.70 399 450 1.4E-17 T 23-04-2016 RPE_RS03625 688df67d28f3e36cf90ec0a3c8f5d895 587 Gene3D G3DSA:3.30.1490.70 237 270 1.4E-17 T 23-04-2016 RPE_RS03625 688df67d28f3e36cf90ec0a3c8f5d895 587 PANTHER PTHR10459:SF10 238 581 3.4E-60 T 23-04-2016 RPE_RS03625 688df67d28f3e36cf90ec0a3c8f5d895 587 Gene3D G3DSA:3.30.470.30 271 387 2.6E-22 T 23-04-2016 RPE_RS03625 688df67d28f3e36cf90ec0a3c8f5d895 587 SUPERFAMILY SSF56091 240 449 3.74E-47 T 23-04-2016 RPE_RS03625 688df67d28f3e36cf90ec0a3c8f5d895 587 SUPERFAMILY SSF50249 455 584 2.06E-29 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS03625 688df67d28f3e36cf90ec0a3c8f5d895 587 Pfam PF01068 ATP dependent DNA ligase domain 245 449 5.1E-23 T 23-04-2016 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 Reactome: REACT_216 RPE_RS03625 688df67d28f3e36cf90ec0a3c8f5d895 587 TIGRFAM TIGR04120 DNA_lig_bact: DNA ligase, ATP-dependent, PP_1105 family 3 582 1.1E-239 T 23-04-2016 IPR026333 ATP-dependent DNA ligase, PP_1105 family RPE_RS03625 688df67d28f3e36cf90ec0a3c8f5d895 587 Gene3D G3DSA:2.40.50.140 455 584 3.7E-34 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS03625 688df67d28f3e36cf90ec0a3c8f5d895 587 PANTHER PTHR10459 238 581 3.4E-60 T 23-04-2016 RPE_RS16825 d05b6e756f50a721780f568f4a2184d2 492 SUPERFAMILY SSF75304 1 482 6.93E-151 T 23-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RPE_RS16825 d05b6e756f50a721780f568f4a2184d2 492 Gene3D G3DSA:3.90.1300.10 1 488 9.4E-170 T 23-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RPE_RS16825 d05b6e756f50a721780f568f4a2184d2 492 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 12 483 89.378 T 23-04-2016 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RPE_RS16825 d05b6e756f50a721780f568f4a2184d2 492 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 16 481 1.7E-164 T 23-04-2016 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RPE_RS16825 d05b6e756f50a721780f568f4a2184d2 492 Pfam PF01425 Amidase 26 471 7.7E-145 T 23-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RPE_RS16825 d05b6e756f50a721780f568f4a2184d2 492 PANTHER PTHR11895:SF7 1 489 6.1E-207 T 23-04-2016 RPE_RS16825 d05b6e756f50a721780f568f4a2184d2 492 ProSitePatterns PS00571 Amidases signature. 156 187 - T 23-04-2016 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RPE_RS16825 d05b6e756f50a721780f568f4a2184d2 492 PANTHER PTHR11895 1 489 6.1E-207 T 23-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RPE_RS17255 817faad3de25a665cc4e83807350a36d 483 SUPERFAMILY SSF48173 194 482 5.76E-116 T 23-04-2016 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain RPE_RS17255 817faad3de25a665cc4e83807350a36d 483 Pfam PF03441 FAD binding domain of DNA photolyase 279 478 1.3E-83 T 23-04-2016 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain RPE_RS17255 817faad3de25a665cc4e83807350a36d 483 SUPERFAMILY SSF52425 8 211 7.46E-53 T 23-04-2016 IPR006050 DNA photolyase, N-terminal RPE_RS17255 817faad3de25a665cc4e83807350a36d 483 PRINTS PR00147 DNA photolyase signature 328 344 1.4E-23 T 23-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 RPE_RS17255 817faad3de25a665cc4e83807350a36d 483 PRINTS PR00147 DNA photolyase signature 387 401 1.4E-23 T 23-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 RPE_RS17255 817faad3de25a665cc4e83807350a36d 483 PRINTS PR00147 DNA photolyase signature 145 161 1.4E-23 T 23-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 RPE_RS17255 817faad3de25a665cc4e83807350a36d 483 PRINTS PR00147 DNA photolyase signature 348 366 1.4E-23 T 23-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 RPE_RS17255 817faad3de25a665cc4e83807350a36d 483 Gene3D G3DSA:3.40.50.620 5 152 5.0E-43 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS17255 817faad3de25a665cc4e83807350a36d 483 Gene3D G3DSA:1.10.579.10 287 481 7.0E-80 T 23-04-2016 RPE_RS17255 817faad3de25a665cc4e83807350a36d 483 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 328 340 - T 23-04-2016 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal RPE_RS17255 817faad3de25a665cc4e83807350a36d 483 PANTHER PTHR11455 10 482 1.3E-202 T 23-04-2016 RPE_RS17255 817faad3de25a665cc4e83807350a36d 483 PANTHER PTHR11455:SF18 10 482 1.3E-202 T 23-04-2016 RPE_RS17255 817faad3de25a665cc4e83807350a36d 483 Pfam PF00875 DNA photolyase 9 173 2.4E-45 T 23-04-2016 IPR006050 DNA photolyase, N-terminal RPE_RS17255 817faad3de25a665cc4e83807350a36d 483 Gene3D G3DSA:1.25.40.80 153 173 3.4E-38 T 23-04-2016 RPE_RS17255 817faad3de25a665cc4e83807350a36d 483 Gene3D G3DSA:1.25.40.80 206 286 3.4E-38 T 23-04-2016 RPE_RS17255 817faad3de25a665cc4e83807350a36d 483 ProSitePatterns PS00691 DNA photolyases class 1 signature 2. 348 367 - T 23-04-2016 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal RPE_RS18450 4791170917623d6dcff16f2599bad96a 318 SUPERFAMILY SSF160964 23 60 7.06E-5 T 23-04-2016 RPE_RS18450 4791170917623d6dcff16f2599bad96a 318 Gene3D G3DSA:1.20.58.370 25 60 4.5E-4 T 23-04-2016 RPE_RS18450 4791170917623d6dcff16f2599bad96a 318 PANTHER PTHR30193 5 317 9.7E-131 T 23-04-2016 RPE_RS18450 4791170917623d6dcff16f2599bad96a 318 Gene3D G3DSA:1.10.3720.10 78 308 3.4E-55 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS18450 4791170917623d6dcff16f2599bad96a 318 PANTHER PTHR30193:SF2 5 317 9.7E-131 T 23-04-2016 RPE_RS18450 4791170917623d6dcff16f2599bad96a 318 SUPERFAMILY SSF161098 72 297 2.09E-56 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS18450 4791170917623d6dcff16f2599bad96a 318 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 104 300 5.9E-16 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS08535 beeee34881a14a3113b0bda0d478c8ac 243 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 214 236 3.9E-9 T 23-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RPE_RS08535 beeee34881a14a3113b0bda0d478c8ac 243 SMART SM00382 29 216 2.3E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS08535 beeee34881a14a3113b0bda0d478c8ac 243 Pfam PF00005 ABC transporter 22 165 6.1E-28 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS08535 beeee34881a14a3113b0bda0d478c8ac 243 SUPERFAMILY SSF52540 3 237 2.61E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS08535 beeee34881a14a3113b0bda0d478c8ac 243 PANTHER PTHR24220 6 241 2.7E-111 T 23-04-2016 RPE_RS08535 beeee34881a14a3113b0bda0d478c8ac 243 PANTHER PTHR24220:SF358 6 241 2.7E-111 T 23-04-2016 RPE_RS08535 beeee34881a14a3113b0bda0d478c8ac 243 Gene3D G3DSA:3.40.50.300 2 232 5.4E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15090 00621aeb5773e96958541f4997334e11 229 Pfam PF07813 LTXXQ motif family protein 123 218 1.4E-6 T 23-04-2016 IPR012899 LTXXQ motif family protein GO:0042597 RPE_RS02440 9952a59351ffe318f78563bb07d82af4 171 PIRSF PIRSF032162 3 168 3.0E-59 T 23-04-2016 IPR016990 Uncharacterised conserved protein UCP032162, transmembrane RPE_RS02440 9952a59351ffe318f78563bb07d82af4 171 Pfam PF10003 Integral membrane protein (DUF2244) 21 160 5.4E-47 T 23-04-2016 IPR019253 Protein of unknown function DUF2244, transmembrane RPE_RS19220 66e78dd12a865d962171890ca4b6558e 144 PANTHER PTHR36919 1 140 4.0E-48 T 23-04-2016 RPE_RS19220 66e78dd12a865d962171890ca4b6558e 144 PANTHER PTHR36919:SF2 1 140 4.0E-48 T 23-04-2016 RPE_RS19220 66e78dd12a865d962171890ca4b6558e 144 Pfam PF09917 Uncharacterized protein conserved in bacteria (DUF2147) 28 140 1.6E-29 T 23-04-2016 IPR019223 Domain of unknown function DUF2147 RPE_RS11745 a825d9812229d3d9d8e03ad714da47d9 220 SUPERFAMILY SSF53335 45 204 3.59E-28 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS11745 a825d9812229d3d9d8e03ad714da47d9 220 Pfam PF13578 Methyltransferase domain 83 186 7.0E-16 T 23-04-2016 RPE_RS11745 a825d9812229d3d9d8e03ad714da47d9 220 Gene3D G3DSA:3.40.50.150 57 195 1.6E-40 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS11745 a825d9812229d3d9d8e03ad714da47d9 220 PANTHER PTHR10509:SF10 61 187 7.3E-41 T 23-04-2016 RPE_RS11745 a825d9812229d3d9d8e03ad714da47d9 220 PANTHER PTHR10509 61 187 7.3E-41 T 23-04-2016 RPE_RS04440 17f6342a871f6f274174208097f0739b 340 PANTHER PTHR30160:SF13 5 337 8.2E-73 T 23-04-2016 RPE_RS04440 17f6342a871f6f274174208097f0739b 340 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 14 324 1.3E-92 T 23-04-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 RPE_RS04440 17f6342a871f6f274174208097f0739b 340 PANTHER PTHR30160 5 337 8.2E-73 T 23-04-2016 RPE_RS04440 17f6342a871f6f274174208097f0739b 340 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 2 332 34.713 T 23-04-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 RPE_RS04440 17f6342a871f6f274174208097f0739b 340 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 13 312 3.3E-62 T 23-04-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 RPE_RS04440 17f6342a871f6f274174208097f0739b 340 SUPERFAMILY SSF52540 41 143 8.85E-8 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS00685 8ee9920fe2a5f3d1a9a6d458c55c52e1 212 PANTHER PTHR30353 4 207 1.3E-57 T 23-04-2016 IPR032818 DedA family RPE_RS00685 8ee9920fe2a5f3d1a9a6d458c55c52e1 212 PANTHER PTHR30353:SF5 4 207 1.3E-57 T 23-04-2016 RPE_RS00685 8ee9920fe2a5f3d1a9a6d458c55c52e1 212 Pfam PF09335 SNARE associated Golgi protein 39 162 5.0E-17 T 23-04-2016 IPR032816 SNARE associated Golgi protein RPE_RS18865 bd579fd4dba0f20b24e516cde1473143 298 PANTHER PTHR21091:SF31 146 277 1.3E-31 T 23-04-2016 RPE_RS18865 bd579fd4dba0f20b24e516cde1473143 298 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 14 286 1.6E-101 T 23-04-2016 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 RPE_RS18865 bd579fd4dba0f20b24e516cde1473143 298 PANTHER PTHR21091 146 277 1.3E-31 T 23-04-2016 RPE_RS18865 bd579fd4dba0f20b24e516cde1473143 298 Gene3D G3DSA:3.20.20.220 10 294 3.5E-101 T 23-04-2016 IPR029041 FAD-linked oxidoreductase-like RPE_RS18865 bd579fd4dba0f20b24e516cde1473143 298 SUPERFAMILY SSF51730 10 290 1.24E-95 T 23-04-2016 IPR029041 FAD-linked oxidoreductase-like RPE_RS18865 bd579fd4dba0f20b24e516cde1473143 298 Pfam PF02219 Methylenetetrahydrofolate reductase 10 287 6.1E-93 T 23-04-2016 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 RPE_RS02725 e2de8949e8fd93419215cbfa33a09e77 694 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 562 667 2.5E-19 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS02725 e2de8949e8fd93419215cbfa33a09e77 694 SUPERFAMILY SSF158472 343 390 3.53E-9 T 23-04-2016 RPE_RS02725 e2de8949e8fd93419215cbfa33a09e77 694 SMART SM00304 342 395 3.0E-7 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS02725 e2de8949e8fd93419215cbfa33a09e77 694 SMART SM00387 556 669 2.9E-22 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS02725 e2de8949e8fd93419215cbfa33a09e77 694 PANTHER PTHR24423 413 457 6.0E-79 T 23-04-2016 RPE_RS02725 e2de8949e8fd93419215cbfa33a09e77 694 SUPERFAMILY SSF55874 514 668 1.96E-34 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS02725 e2de8949e8fd93419215cbfa33a09e77 694 PANTHER PTHR24423 478 673 6.0E-79 T 23-04-2016 RPE_RS02725 e2de8949e8fd93419215cbfa33a09e77 694 PANTHER PTHR24423 124 160 6.0E-79 T 23-04-2016 RPE_RS02725 e2de8949e8fd93419215cbfa33a09e77 694 PRINTS PR00344 Bacterial sensor protein C-terminal signature 597 611 1.1E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS02725 e2de8949e8fd93419215cbfa33a09e77 694 PRINTS PR00344 Bacterial sensor protein C-terminal signature 628 646 1.1E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS02725 e2de8949e8fd93419215cbfa33a09e77 694 PRINTS PR00344 Bacterial sensor protein C-terminal signature 653 666 1.1E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS02725 e2de8949e8fd93419215cbfa33a09e77 694 PRINTS PR00344 Bacterial sensor protein C-terminal signature 615 625 1.1E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS02725 e2de8949e8fd93419215cbfa33a09e77 694 PANTHER PTHR24423:SF445 478 673 6.0E-79 T 23-04-2016 RPE_RS02725 e2de8949e8fd93419215cbfa33a09e77 694 PANTHER PTHR24423:SF445 124 160 6.0E-79 T 23-04-2016 RPE_RS02725 e2de8949e8fd93419215cbfa33a09e77 694 PANTHER PTHR24423:SF445 413 457 6.0E-79 T 23-04-2016 RPE_RS02725 e2de8949e8fd93419215cbfa33a09e77 694 Gene3D G3DSA:3.30.565.10 517 667 1.5E-34 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS02725 e2de8949e8fd93419215cbfa33a09e77 694 Pfam PF00672 HAMP domain 323 390 1.2E-10 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS14005 7303a6e17e253165b8753e95c4c39ebe 699 SMART SM00490 503 586 2.2E-17 T 23-04-2016 IPR001650 Helicase, C-terminal RPE_RS14005 7303a6e17e253165b8753e95c4c39ebe 699 SMART SM00487 268 458 1.9E-28 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RPE_RS14005 7303a6e17e253165b8753e95c4c39ebe 699 Pfam PF17191 RecG wedge domain 17 179 5.6E-9 T 23-04-2016 IPR033454 RecG, wedge domain RPE_RS14005 7303a6e17e253165b8753e95c4c39ebe 699 SUPERFAMILY SSF50249 13 182 1.51E-22 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS14005 7303a6e17e253165b8753e95c4c39ebe 699 Gene3D G3DSA:2.40.50.140 53 141 5.5E-8 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS14005 7303a6e17e253165b8753e95c4c39ebe 699 SUPERFAMILY SSF52540 192 451 3.51E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14005 7303a6e17e253165b8753e95c4c39ebe 699 PANTHER PTHR24031:SF249 302 601 4.2E-106 T 23-04-2016 RPE_RS14005 7303a6e17e253165b8753e95c4c39ebe 699 PANTHER PTHR24031:SF249 623 692 4.2E-106 T 23-04-2016 RPE_RS14005 7303a6e17e253165b8753e95c4c39ebe 699 PANTHER PTHR24031:SF249 193 214 4.2E-106 T 23-04-2016 RPE_RS14005 7303a6e17e253165b8753e95c4c39ebe 699 Gene3D G3DSA:3.40.50.300 259 452 1.8E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14005 7303a6e17e253165b8753e95c4c39ebe 699 PANTHER PTHR24031 302 601 4.2E-106 T 23-04-2016 RPE_RS14005 7303a6e17e253165b8753e95c4c39ebe 699 PANTHER PTHR24031 623 692 4.2E-106 T 23-04-2016 RPE_RS14005 7303a6e17e253165b8753e95c4c39ebe 699 PANTHER PTHR24031 193 214 4.2E-106 T 23-04-2016 RPE_RS14005 7303a6e17e253165b8753e95c4c39ebe 699 SUPERFAMILY SSF52540 451 649 4.5E-34 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14005 7303a6e17e253165b8753e95c4c39ebe 699 Pfam PF00270 DEAD/DEAH box helicase 296 430 1.2E-15 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RPE_RS14005 7303a6e17e253165b8753e95c4c39ebe 699 Gene3D G3DSA:3.40.50.300 453 635 1.1E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14005 7303a6e17e253165b8753e95c4c39ebe 699 Pfam PF00271 Helicase conserved C-terminal domain 482 585 1.1E-15 T 23-04-2016 IPR001650 Helicase, C-terminal RPE_RS04405 612b09c9945c158c245c73fcc652e0f2 311 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 20 307 27.049 T 23-04-2016 IPR031103 4-hydroxybenzoate octaprenyltransferase GO:0004659|GO:0006744|GO:0016021 UniPathway: UPA00232 RPE_RS04405 612b09c9945c158c245c73fcc652e0f2 311 Pfam PF01040 UbiA prenyltransferase family 43 288 9.8E-57 T 23-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 RPE_RS04405 612b09c9945c158c245c73fcc652e0f2 311 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 86 108 - T 23-04-2016 IPR030470 UbiA prenyltransferase conserved site RPE_RS04405 612b09c9945c158c245c73fcc652e0f2 311 PANTHER PTHR11048 15 310 8.6E-123 T 23-04-2016 RPE_RS04405 612b09c9945c158c245c73fcc652e0f2 311 PANTHER PTHR11048:SF28 15 310 8.6E-123 T 23-04-2016 RPE_RS04405 612b09c9945c158c245c73fcc652e0f2 311 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 26 306 1.2E-110 T 23-04-2016 IPR006370 4-hydroxybenzoate polyprenyltransferase GO:0004659|GO:0016021 UniPathway: UPA00232 RPE_RS04350 292063a0e19102d43521841b9ccc506b 262 Gene3D G3DSA:1.10.287.500 168 213 1.3E-13 T 23-04-2016 RPE_RS04350 292063a0e19102d43521841b9ccc506b 262 Gene3D G3DSA:1.10.287.500 118 159 1.3E-4 T 23-04-2016 RPE_RS04350 292063a0e19102d43521841b9ccc506b 262 Pfam PF04344 Chemotaxis phosphatase, CheZ 168 261 1.2E-10 T 23-04-2016 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 KEGG: 00051+3.1.3.-|KEGG: 00332+3.1.3.-|KEGG: 00565+3.1.3.-|KEGG: 00600+3.1.3.-|KEGG: 00730+3.1.3.-|KEGG: 00740+3.1.3.-|KEGG: 00760+3.1.3.- RPE_RS04350 292063a0e19102d43521841b9ccc506b 262 SUPERFAMILY SSF75708 89 262 1.28E-40 T 23-04-2016 RPE_RS24190 8fc48e0f6a3423d9411885f1f4bfd696 465 Gene3D G3DSA:1.10.40.30 376 434 3.8E-25 T 23-04-2016 RPE_RS24190 8fc48e0f6a3423d9411885f1f4bfd696 465 ProSitePatterns PS00163 Fumarate lyases signature. 277 286 - T 23-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 RPE_RS24190 8fc48e0f6a3423d9411885f1f4bfd696 465 Hamap MF_00006 Argininosuccinate lyase [argH]. 4 456 41.238 T 23-04-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RPE_RS24190 8fc48e0f6a3423d9411885f1f4bfd696 465 PANTHER PTHR11444 2 458 1.9E-219 T 23-04-2016 IPR000362 Fumarate lyase family RPE_RS24190 8fc48e0f6a3423d9411885f1f4bfd696 465 Gene3D G3DSA:1.20.200.10 109 375 4.6E-101 T 23-04-2016 RPE_RS24190 8fc48e0f6a3423d9411885f1f4bfd696 465 Gene3D G3DSA:1.10.275.10 3 108 2.9E-39 T 23-04-2016 IPR024083 Fumarase/histidase, N-terminal RPE_RS24190 8fc48e0f6a3423d9411885f1f4bfd696 465 Pfam PF14698 Argininosuccinate lyase C-terminal 365 434 6.0E-21 T 23-04-2016 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RPE_RS24190 8fc48e0f6a3423d9411885f1f4bfd696 465 Pfam PF00206 Lyase 8 302 2.9E-78 T 23-04-2016 IPR022761 Fumarate lyase, N-terminal RPE_RS24190 8fc48e0f6a3423d9411885f1f4bfd696 465 PRINTS PR00149 Fumarate lyase superfamily signature 233 260 3.0E-31 T 23-04-2016 IPR000362 Fumarate lyase family RPE_RS24190 8fc48e0f6a3423d9411885f1f4bfd696 465 PRINTS PR00149 Fumarate lyase superfamily signature 104 122 3.0E-31 T 23-04-2016 IPR000362 Fumarate lyase family RPE_RS24190 8fc48e0f6a3423d9411885f1f4bfd696 465 PRINTS PR00149 Fumarate lyase superfamily signature 149 167 3.0E-31 T 23-04-2016 IPR000362 Fumarate lyase family RPE_RS24190 8fc48e0f6a3423d9411885f1f4bfd696 465 PRINTS PR00149 Fumarate lyase superfamily signature 277 293 3.0E-31 T 23-04-2016 IPR000362 Fumarate lyase family RPE_RS24190 8fc48e0f6a3423d9411885f1f4bfd696 465 PANTHER PTHR11444:SF3 2 458 1.9E-219 T 23-04-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RPE_RS24190 8fc48e0f6a3423d9411885f1f4bfd696 465 TIGRFAM TIGR00838 argH: argininosuccinate lyase 5 453 4.8E-173 T 23-04-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RPE_RS24190 8fc48e0f6a3423d9411885f1f4bfd696 465 SUPERFAMILY SSF48557 5 458 6.91E-143 T 23-04-2016 IPR008948 L-Aspartase-like GO:0003824 RPE_RS24190 8fc48e0f6a3423d9411885f1f4bfd696 465 PRINTS PR00145 Argininosuccinate lyase family signature 277 293 1.0E-64 T 23-04-2016 RPE_RS24190 8fc48e0f6a3423d9411885f1f4bfd696 465 PRINTS PR00145 Argininosuccinate lyase family signature 103 125 1.0E-64 T 23-04-2016 RPE_RS24190 8fc48e0f6a3423d9411885f1f4bfd696 465 PRINTS PR00145 Argininosuccinate lyase family signature 195 211 1.0E-64 T 23-04-2016 RPE_RS24190 8fc48e0f6a3423d9411885f1f4bfd696 465 PRINTS PR00145 Argininosuccinate lyase family signature 312 331 1.0E-64 T 23-04-2016 RPE_RS24190 8fc48e0f6a3423d9411885f1f4bfd696 465 PRINTS PR00145 Argininosuccinate lyase family signature 144 164 1.0E-64 T 23-04-2016 RPE_RS24190 8fc48e0f6a3423d9411885f1f4bfd696 465 PRINTS PR00145 Argininosuccinate lyase family signature 233 257 1.0E-64 T 23-04-2016 RPE_RS19815 1d2b4a23ca9d286267a9cebf2b048eda 158 SMART SM00344 5 114 3.6E-42 T 23-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RPE_RS19815 1d2b4a23ca9d286267a9cebf2b048eda 158 Gene3D G3DSA:3.30.70.920 58 141 3.6E-25 T 23-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RPE_RS19815 1d2b4a23ca9d286267a9cebf2b048eda 158 ProSitePatterns PS00519 AsnC-type HTH domain signature. 23 49 - T 23-04-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RPE_RS19815 1d2b4a23ca9d286267a9cebf2b048eda 158 SUPERFAMILY SSF46785 4 65 6.34E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS19815 1d2b4a23ca9d286267a9cebf2b048eda 158 PANTHER PTHR30154:SF22 2 158 4.5E-98 T 23-04-2016 RPE_RS19815 1d2b4a23ca9d286267a9cebf2b048eda 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 32 51 3.4E-19 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RPE_RS19815 1d2b4a23ca9d286267a9cebf2b048eda 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 5 21 3.4E-19 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RPE_RS19815 1d2b4a23ca9d286267a9cebf2b048eda 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 21 32 3.4E-19 T 23-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 RPE_RS19815 1d2b4a23ca9d286267a9cebf2b048eda 158 Pfam PF01037 Lrp/AsnC ligand binding domain 73 143 5.9E-19 T 23-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RPE_RS19815 1d2b4a23ca9d286267a9cebf2b048eda 158 Gene3D G3DSA:1.10.10.10 6 55 1.4E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS19815 1d2b4a23ca9d286267a9cebf2b048eda 158 Pfam PF13412 Winged helix-turn-helix DNA-binding 5 52 1.7E-22 T 23-04-2016 RPE_RS19815 1d2b4a23ca9d286267a9cebf2b048eda 158 PANTHER PTHR30154 2 158 4.5E-98 T 23-04-2016 RPE_RS19815 1d2b4a23ca9d286267a9cebf2b048eda 158 SUPERFAMILY SSF54909 65 153 2.01E-18 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RPE_RS18465 861ad829e9f4805c95c4026a5cf728f4 599 SUPERFAMILY SSF52016 383 584 4.63E-46 T 23-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RPE_RS18465 861ad829e9f4805c95c4026a5cf728f4 599 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 129 139 - T 23-04-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RPE_RS18465 861ad829e9f4805c95c4026a5cf728f4 599 PANTHER PTHR21000:SF14 8 596 0.0 T 23-04-2016 RPE_RS18465 861ad829e9f4805c95c4026a5cf728f4 599 PANTHER PTHR21000 8 596 0.0 T 23-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RPE_RS18465 861ad829e9f4805c95c4026a5cf728f4 599 Pfam PF00920 Dehydratase family 46 577 5.3E-154 T 23-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RPE_RS18465 861ad829e9f4805c95c4026a5cf728f4 599 SUPERFAMILY SSF143975 5 380 1.18E-119 T 23-04-2016 RPE_RS21000 93e6669ae7c5da47387be754a7cadbfe 476 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 84 98 - T 23-04-2016 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RPE_RS21000 93e6669ae7c5da47387be754a7cadbfe 476 SUPERFAMILY SSF52283 187 234 1.87E-113 T 23-04-2016 RPE_RS21000 93e6669ae7c5da47387be754a7cadbfe 476 SUPERFAMILY SSF52283 395 476 1.87E-113 T 23-04-2016 RPE_RS21000 93e6669ae7c5da47387be754a7cadbfe 476 SUPERFAMILY SSF52283 10 149 1.87E-113 T 23-04-2016 RPE_RS21000 93e6669ae7c5da47387be754a7cadbfe 476 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 235 394 2.3E-81 T 23-04-2016 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RPE_RS21000 93e6669ae7c5da47387be754a7cadbfe 476 Hamap MF_00563 Adenosylhomocysteinase [ahcY]. 8 468 48.33 T 23-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RPE_RS21000 93e6669ae7c5da47387be754a7cadbfe 476 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 257 274 - T 23-04-2016 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RPE_RS21000 93e6669ae7c5da47387be754a7cadbfe 476 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 13 468 6.0E-180 T 23-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RPE_RS21000 93e6669ae7c5da47387be754a7cadbfe 476 PANTHER PTHR23420 8 147 0.0 T 23-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RPE_RS21000 93e6669ae7c5da47387be754a7cadbfe 476 PANTHER PTHR23420 190 476 0.0 T 23-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RPE_RS21000 93e6669ae7c5da47387be754a7cadbfe 476 PIRSF PIRSF001109 1 476 1.0E-187 T 23-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RPE_RS21000 93e6669ae7c5da47387be754a7cadbfe 476 SUPERFAMILY SSF51735 235 394 1.68E-77 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS21000 93e6669ae7c5da47387be754a7cadbfe 476 SMART SM00997 235 394 1.6E-111 T 23-04-2016 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RPE_RS21000 93e6669ae7c5da47387be754a7cadbfe 476 Gene3D G3DSA:3.40.50.1480 12 236 8.3E-145 T 23-04-2016 RPE_RS21000 93e6669ae7c5da47387be754a7cadbfe 476 Gene3D G3DSA:3.40.50.1480 395 476 8.3E-145 T 23-04-2016 RPE_RS21000 93e6669ae7c5da47387be754a7cadbfe 476 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 12 475 8.7E-145 T 23-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RPE_RS21000 93e6669ae7c5da47387be754a7cadbfe 476 SMART SM00996 12 475 0.0 T 23-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 RPE_RS21000 93e6669ae7c5da47387be754a7cadbfe 476 Gene3D G3DSA:3.40.50.720 237 392 1.5E-50 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS02195 91f6c905721d03678d70a9dc82070782 282 PANTHER PTHR32243:SF31 1 280 1.9E-128 T 23-04-2016 IPR030165 sn-glycerol-3-phosphate transport system permease protein UgpE GO:0001407|GO:0005887|GO:0015794|GO:0055052 RPE_RS02195 91f6c905721d03678d70a9dc82070782 282 Gene3D G3DSA:1.10.3720.10 4 271 1.2E-49 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS02195 91f6c905721d03678d70a9dc82070782 282 SUPERFAMILY SSF161098 4 278 1.7E-56 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS02195 91f6c905721d03678d70a9dc82070782 282 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 277 1.6E-18 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS02195 91f6c905721d03678d70a9dc82070782 282 PANTHER PTHR32243 1 280 1.9E-128 T 23-04-2016 RPE_RS01990 57cb59012fad1003ea5f3eb327e2628f 258 PANTHER PTHR35869 53 252 5.6E-50 T 23-04-2016 RPE_RS01990 57cb59012fad1003ea5f3eb327e2628f 258 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 93 249 5.6E-39 T 23-04-2016 IPR004564 Outer membrane lipoprotein carrier protein LolA-like RPE_RS01990 57cb59012fad1003ea5f3eb327e2628f 258 Gene3D G3DSA:2.50.20.10 84 249 2.6E-25 T 23-04-2016 RPE_RS01990 57cb59012fad1003ea5f3eb327e2628f 258 SUPERFAMILY SSF89392 84 249 9.42E-28 T 23-04-2016 IPR029046 Lipoprotein localisation LolA/LolB/LppX RPE_RS10755 f385d95c5677e9d99b0d6b230bb02303 169 Pfam PF04386 Stringent starvation protein B 11 161 5.3E-53 T 23-04-2016 IPR007481 Stringent starvation protein B RPE_RS10755 f385d95c5677e9d99b0d6b230bb02303 169 Gene3D G3DSA:2.30.30.220 1 117 4.8E-54 T 23-04-2016 IPR007481 Stringent starvation protein B RPE_RS10755 f385d95c5677e9d99b0d6b230bb02303 169 SUPERFAMILY SSF101738 4 117 2.88E-45 T 23-04-2016 IPR007481 Stringent starvation protein B RPE_RS22040 89c87ef910ba389f348757420d4d65d8 320 SUPERFAMILY SSF55681 13 304 1.19E-125 T 23-04-2016 RPE_RS22040 89c87ef910ba389f348757420d4d65d8 320 Gene3D G3DSA:3.30.930.10 7 219 2.4E-100 T 23-04-2016 RPE_RS22040 89c87ef910ba389f348757420d4d65d8 320 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 13 305 9.8E-138 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RPE_RS22040 89c87ef910ba389f348757420d4d65d8 320 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 12 307 57.889 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RPE_RS22040 89c87ef910ba389f348757420d4d65d8 320 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 267 283 3.2E-55 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RPE_RS22040 89c87ef910ba389f348757420d4d65d8 320 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 66 81 3.2E-55 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RPE_RS22040 89c87ef910ba389f348757420d4d65d8 320 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 87 107 3.2E-55 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RPE_RS22040 89c87ef910ba389f348757420d4d65d8 320 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 118 142 3.2E-55 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RPE_RS22040 89c87ef910ba389f348757420d4d65d8 320 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 144 164 3.2E-55 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RPE_RS22040 89c87ef910ba389f348757420d4d65d8 320 PANTHER PTHR30075 1 304 1.7E-221 T 23-04-2016 RPE_RS22040 89c87ef910ba389f348757420d4d65d8 320 Gene3D G3DSA:1.20.58.180 221 311 1.2E-33 T 23-04-2016 RPE_RS22040 89c87ef910ba389f348757420d4d65d8 320 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 14 304 2.0E-144 T 23-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RPE_RS13690 1a3070801ec20a42ea04e3626aabc419 395 PANTHER PTHR11808:SF45 13 393 4.5E-221 T 23-04-2016 RPE_RS13690 1a3070801ec20a42ea04e3626aabc419 395 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 203 217 - T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RPE_RS13690 1a3070801ec20a42ea04e3626aabc419 395 SUPERFAMILY SSF53383 45 389 5.85E-93 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS13690 1a3070801ec20a42ea04e3626aabc419 395 TIGRFAM TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase 14 390 8.0E-159 T 23-04-2016 IPR006233 Cystathionine beta-lyase, bacterial GO:0004121|GO:0005737|GO:0006520 KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8|MetaCyc: PWY-6936|UniPathway: UPA00051 RPE_RS13690 1a3070801ec20a42ea04e3626aabc419 395 PIRSF PIRSF001434 1 392 4.3E-114 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RPE_RS13690 1a3070801ec20a42ea04e3626aabc419 395 PANTHER PTHR11808 13 393 4.5E-221 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RPE_RS13690 1a3070801ec20a42ea04e3626aabc419 395 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 13 388 6.6E-98 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RPE_RS13690 1a3070801ec20a42ea04e3626aabc419 395 Gene3D G3DSA:3.90.1150.10 260 390 2.5E-32 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS13690 1a3070801ec20a42ea04e3626aabc419 395 Gene3D G3DSA:3.40.640.10 12 259 4.3E-72 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS08690 faa34cf415d0aa50fad806a4b314ec0d 494 Gene3D G3DSA:3.30.450.20 122 240 5.6E-31 T 23-04-2016 RPE_RS08690 faa34cf415d0aa50fad806a4b314ec0d 494 Gene3D G3DSA:3.30.565.10 341 484 2.4E-36 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS08690 faa34cf415d0aa50fad806a4b314ec0d 494 SMART SM00388 264 335 8.5E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS08690 faa34cf415d0aa50fad806a4b314ec0d 494 PRINTS PR00344 Bacterial sensor protein C-terminal signature 435 445 3.4E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS08690 faa34cf415d0aa50fad806a4b314ec0d 494 PRINTS PR00344 Bacterial sensor protein C-terminal signature 446 464 3.4E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS08690 faa34cf415d0aa50fad806a4b314ec0d 494 PRINTS PR00344 Bacterial sensor protein C-terminal signature 470 483 3.4E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS08690 faa34cf415d0aa50fad806a4b314ec0d 494 PRINTS PR00344 Bacterial sensor protein C-terminal signature 417 431 3.4E-16 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS08690 faa34cf415d0aa50fad806a4b314ec0d 494 Gene3D G3DSA:1.10.287.130 263 329 3.5E-4 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS08690 faa34cf415d0aa50fad806a4b314ec0d 494 SMART SM00086 72 114 7.2E-4 T 23-04-2016 IPR001610 PAC motif RPE_RS08690 faa34cf415d0aa50fad806a4b314ec0d 494 SMART SM00086 202 242 8.7 T 23-04-2016 IPR001610 PAC motif RPE_RS08690 faa34cf415d0aa50fad806a4b314ec0d 494 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 123 249 1.6E-34 T 23-04-2016 IPR000014 PAS domain RPE_RS08690 faa34cf415d0aa50fad806a4b314ec0d 494 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 5 121 2.4E-13 T 23-04-2016 IPR000014 PAS domain RPE_RS08690 faa34cf415d0aa50fad806a4b314ec0d 494 Pfam PF08447 PAS fold 22 108 1.9E-14 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 RPE_RS08690 faa34cf415d0aa50fad806a4b314ec0d 494 Gene3D G3DSA:3.30.450.20 5 121 2.3E-23 T 23-04-2016 RPE_RS08690 faa34cf415d0aa50fad806a4b314ec0d 494 SUPERFAMILY SSF55874 323 486 6.68E-36 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS08690 faa34cf415d0aa50fad806a4b314ec0d 494 SMART SM00091 126 192 2.3E-14 T 23-04-2016 IPR000014 PAS domain RPE_RS08690 faa34cf415d0aa50fad806a4b314ec0d 494 SMART SM00091 1 66 0.003 T 23-04-2016 IPR000014 PAS domain RPE_RS08690 faa34cf415d0aa50fad806a4b314ec0d 494 Pfam PF00989 PAS fold 127 238 4.5E-22 T 23-04-2016 IPR013767 PAS fold GO:0006355 RPE_RS08690 faa34cf415d0aa50fad806a4b314ec0d 494 PANTHER PTHR24423:SF505 1 489 1.3E-184 T 23-04-2016 RPE_RS08690 faa34cf415d0aa50fad806a4b314ec0d 494 SUPERFAMILY SSF55785 137 251 4.06E-29 T 23-04-2016 IPR000014 PAS domain RPE_RS08690 faa34cf415d0aa50fad806a4b314ec0d 494 Pfam PF00512 His Kinase A (phospho-acceptor) domain 265 333 7.0E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS08690 faa34cf415d0aa50fad806a4b314ec0d 494 PANTHER PTHR24423 1 489 1.3E-184 T 23-04-2016 RPE_RS08690 faa34cf415d0aa50fad806a4b314ec0d 494 SUPERFAMILY SSF55785 6 116 1.4E-20 T 23-04-2016 IPR000014 PAS domain RPE_RS08690 faa34cf415d0aa50fad806a4b314ec0d 494 SUPERFAMILY SSF47384 261 330 2.55E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS08690 faa34cf415d0aa50fad806a4b314ec0d 494 SMART SM00387 377 486 6.1E-30 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS08690 faa34cf415d0aa50fad806a4b314ec0d 494 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 378 484 1.4E-18 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS15545 c84b4ed2dc32e736786d2d3be8a3f455 301 Pfam PF00005 ABC transporter 20 159 4.6E-28 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS15545 c84b4ed2dc32e736786d2d3be8a3f455 301 PANTHER PTHR24220 6 235 3.1E-102 T 23-04-2016 RPE_RS15545 c84b4ed2dc32e736786d2d3be8a3f455 301 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS15545 c84b4ed2dc32e736786d2d3be8a3f455 301 Gene3D G3DSA:3.40.50.300 3 224 1.5E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15545 c84b4ed2dc32e736786d2d3be8a3f455 301 SMART SM00382 29 208 1.6E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS15545 c84b4ed2dc32e736786d2d3be8a3f455 301 SUPERFAMILY SSF52540 4 225 1.48E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15545 c84b4ed2dc32e736786d2d3be8a3f455 301 PANTHER PTHR24220:SF595 6 235 3.1E-102 T 23-04-2016 RPE_RS02330 ed95815c55ba8056dcba09867d61e15b 507 Gene3D G3DSA:3.30.200.20 156 261 3.9E-26 T 23-04-2016 RPE_RS02330 ed95815c55ba8056dcba09867d61e15b 507 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 12 132 4.0E-29 T 23-04-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 RPE_RS02330 ed95815c55ba8056dcba09867d61e15b 507 Gene3D G3DSA:3.40.50.300 8 155 4.7E-37 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02330 ed95815c55ba8056dcba09867d61e15b 507 Pfam PF01636 Phosphotransferase enzyme family 176 431 1.5E-26 T 23-04-2016 IPR002575 Aminoglycoside phosphotransferase RPE_RS02330 ed95815c55ba8056dcba09867d61e15b 507 SUPERFAMILY SSF56112 160 497 9.35E-46 T 23-04-2016 IPR011009 Protein kinase-like domain RPE_RS02330 ed95815c55ba8056dcba09867d61e15b 507 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 12 133 4.9E-25 T 23-04-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 RPE_RS02330 ed95815c55ba8056dcba09867d61e15b 507 SUPERFAMILY SSF52540 21 133 1.7E-13 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02330 ed95815c55ba8056dcba09867d61e15b 507 PIRSF PIRSF036599 1 506 8.4E-215 T 23-04-2016 IPR012180 Predicted bifunctional ATPase/phosphotransferase RPE_RS02330 ed95815c55ba8056dcba09867d61e15b 507 PANTHER PTHR33540 9 211 7.6E-42 T 23-04-2016 RPE_RS02330 ed95815c55ba8056dcba09867d61e15b 507 Gene3D G3DSA:3.90.1200.10 268 504 1.4E-63 T 23-04-2016 RPE_RS16945 91a575e5292aedf1edf449797c38bc1e 247 PANTHER PTHR12318:SF0 11 193 6.8E-39 T 23-04-2016 RPE_RS16945 91a575e5292aedf1edf449797c38bc1e 247 Gene3D G3DSA:3.90.79.10 15 69 2.0E-20 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS16945 91a575e5292aedf1edf449797c38bc1e 247 Gene3D G3DSA:3.90.79.10 102 221 2.0E-20 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS16945 91a575e5292aedf1edf449797c38bc1e 247 SUPERFAMILY SSF55811 15 68 1.83E-15 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS16945 91a575e5292aedf1edf449797c38bc1e 247 SUPERFAMILY SSF55811 141 214 1.83E-15 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS16945 91a575e5292aedf1edf449797c38bc1e 247 SUPERFAMILY SSF55811 99 113 1.83E-15 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS16945 91a575e5292aedf1edf449797c38bc1e 247 PANTHER PTHR12318 11 193 6.8E-39 T 23-04-2016 RPE_RS02300 2495ae9a28fd9ab71e6f43fd9fa1a958 218 Pfam PF08241 Methyltransferase domain 21 120 3.0E-21 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 RPE_RS02300 2495ae9a28fd9ab71e6f43fd9fa1a958 218 Gene3D G3DSA:3.40.50.150 5 187 4.6E-33 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS02300 2495ae9a28fd9ab71e6f43fd9fa1a958 218 SUPERFAMILY SSF53335 5 176 4.14E-34 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS02300 2495ae9a28fd9ab71e6f43fd9fa1a958 218 PANTHER PTHR10108 3 190 3.2E-25 T 23-04-2016 RPE_RS05075 2643c118ef22a41856bdd5879466a4db 734 SUPERFAMILY SSF51120 343 474 7.48E-27 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RPE_RS05075 2643c118ef22a41856bdd5879466a4db 734 PANTHER PTHR38340 320 682 5.0E-14 T 23-04-2016 RPE_RS05075 2643c118ef22a41856bdd5879466a4db 734 SUPERFAMILY SSF51120 430 571 3.66E-13 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RPE_RS05075 2643c118ef22a41856bdd5879466a4db 734 SUPERFAMILY SSF51120 551 659 4.97E-10 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RPE_RS05075 2643c118ef22a41856bdd5879466a4db 734 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 327 345 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RPE_RS05075 2643c118ef22a41856bdd5879466a4db 734 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 390 408 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RPE_RS05075 2643c118ef22a41856bdd5879466a4db 734 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 408 426 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RPE_RS05075 2643c118ef22a41856bdd5879466a4db 734 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 399 417 - T 23-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site RPE_RS05075 2643c118ef22a41856bdd5879466a4db 734 PRINTS PR00313 NodO calcium binding signature 459 468 6.0E-10 T 23-04-2016 RPE_RS05075 2643c118ef22a41856bdd5879466a4db 734 PRINTS PR00313 NodO calcium binding signature 403 411 6.0E-10 T 23-04-2016 RPE_RS05075 2643c118ef22a41856bdd5879466a4db 734 PRINTS PR00313 NodO calcium binding signature 412 420 6.0E-10 T 23-04-2016 RPE_RS05075 2643c118ef22a41856bdd5879466a4db 734 PRINTS PR00313 NodO calcium binding signature 373 384 6.0E-10 T 23-04-2016 RPE_RS05075 2643c118ef22a41856bdd5879466a4db 734 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 618 626 59.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RPE_RS05075 2643c118ef22a41856bdd5879466a4db 734 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 333 347 0.035 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RPE_RS05075 2643c118ef22a41856bdd5879466a4db 734 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 412 428 0.073 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RPE_RS05075 2643c118ef22a41856bdd5879466a4db 734 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 600 612 11.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RPE_RS05075 2643c118ef22a41856bdd5879466a4db 734 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 393 410 0.0058 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RPE_RS05075 2643c118ef22a41856bdd5879466a4db 734 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 367 383 7.2E-4 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RPE_RS05075 2643c118ef22a41856bdd5879466a4db 734 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 349 365 0.11 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RPE_RS05075 2643c118ef22a41856bdd5879466a4db 734 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 519 536 0.18 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RPE_RS05075 2643c118ef22a41856bdd5879466a4db 734 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 431 446 0.44 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RPE_RS05075 2643c118ef22a41856bdd5879466a4db 734 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 501 512 9.3 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RPE_RS05075 2643c118ef22a41856bdd5879466a4db 734 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 317 329 7.3 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RPE_RS05075 2643c118ef22a41856bdd5879466a4db 734 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 553 565 23.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RPE_RS05075 2643c118ef22a41856bdd5879466a4db 734 Gene3D G3DSA:2.150.10.10 303 429 9.6E-38 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RPE_RS05075 2643c118ef22a41856bdd5879466a4db 734 Gene3D G3DSA:2.150.10.10 599 680 1.2E-18 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RPE_RS05075 2643c118ef22a41856bdd5879466a4db 734 Gene3D G3DSA:2.150.10.10 502 564 1.2E-18 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RPE_RS05075 2643c118ef22a41856bdd5879466a4db 734 Gene3D G3DSA:2.150.10.10 430 469 1.2E-18 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RPE_RS01515 1da349a1468614605e50c87a3ce7c858 178 PANTHER PTHR35561 3 178 3.3E-49 T 23-04-2016 RPE_RS01515 1da349a1468614605e50c87a3ce7c858 178 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 2 176 3.1E-42 T 23-04-2016 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 RPE_RS01515 1da349a1468614605e50c87a3ce7c858 178 PANTHER PTHR35561:SF1 3 178 3.3E-49 T 23-04-2016 RPE_RS01515 1da349a1468614605e50c87a3ce7c858 178 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 2 176 22.707 T 23-04-2016 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 RPE_RS01515 1da349a1468614605e50c87a3ce7c858 178 SUPERFAMILY SSF55144 2 176 4.88E-40 T 23-04-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase RPE_RS01515 1da349a1468614605e50c87a3ce7c858 178 Pfam PF13563 2'-5' RNA ligase superfamily 35 159 2.1E-16 T 23-04-2016 RPE_RS01515 1da349a1468614605e50c87a3ce7c858 178 Gene3D G3DSA:3.90.1140.10 3 177 3.8E-46 T 23-04-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase RPE_RS10930 10a167c47295e23da84bf45c1e4964a4 301 Pfam PF01145 SPFH domain / Band 7 family 27 200 2.5E-32 T 23-04-2016 IPR001107 Band 7 domain RPE_RS10930 10a167c47295e23da84bf45c1e4964a4 301 TIGRFAM TIGR01932 hflC: HflC protein 153 284 8.3E-40 T 23-04-2016 IPR010200 HflC GO:0016021|GO:0052547 RPE_RS10930 10a167c47295e23da84bf45c1e4964a4 301 PANTHER PTHR10264:SF80 8 290 3.2E-102 T 23-04-2016 RPE_RS10930 10a167c47295e23da84bf45c1e4964a4 301 SUPERFAMILY SSF117892 55 192 6.8E-29 T 23-04-2016 IPR001107 Band 7 domain RPE_RS10930 10a167c47295e23da84bf45c1e4964a4 301 PIRSF PIRSF005651 1 292 1.3E-94 T 23-04-2016 IPR010200 HflC GO:0016021|GO:0052547 RPE_RS10930 10a167c47295e23da84bf45c1e4964a4 301 PANTHER PTHR10264 8 290 3.2E-102 T 23-04-2016 IPR001972 Stomatin family GO:0016020 RPE_RS10930 10a167c47295e23da84bf45c1e4964a4 301 SMART SM00244 23 185 5.2E-38 T 23-04-2016 IPR001107 Band 7 domain RPE_RS09485 158f20633b3f9908e6660e1732d65394 584 Gene3D G3DSA:1.10.287.950 344 548 1.7E-49 T 23-04-2016 RPE_RS09485 158f20633b3f9908e6660e1732d65394 584 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 141 156 3.0E-22 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS09485 158f20633b3f9908e6660e1732d65394 584 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 345 374 3.0E-22 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS09485 158f20633b3f9908e6660e1732d65394 584 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 422 449 3.0E-22 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS09485 158f20633b3f9908e6660e1732d65394 584 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 499 528 3.0E-22 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS09485 158f20633b3f9908e6660e1732d65394 584 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 451 480 3.0E-22 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS09485 158f20633b3f9908e6660e1732d65394 584 Pfam PF00672 HAMP domain 214 282 2.1E-10 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS09485 158f20633b3f9908e6660e1732d65394 584 PANTHER PTHR32089:SF40 302 581 3.1E-188 T 23-04-2016 RPE_RS09485 158f20633b3f9908e6660e1732d65394 584 PANTHER PTHR32089:SF40 168 178 3.1E-188 T 23-04-2016 RPE_RS09485 158f20633b3f9908e6660e1732d65394 584 PANTHER PTHR32089:SF40 207 268 3.1E-188 T 23-04-2016 RPE_RS09485 158f20633b3f9908e6660e1732d65394 584 SUPERFAMILY SSF58104 263 288 5.49E-64 T 23-04-2016 RPE_RS09485 158f20633b3f9908e6660e1732d65394 584 SUPERFAMILY SSF58104 330 577 5.49E-64 T 23-04-2016 RPE_RS09485 158f20633b3f9908e6660e1732d65394 584 PANTHER PTHR32089 302 581 3.1E-188 T 23-04-2016 RPE_RS09485 158f20633b3f9908e6660e1732d65394 584 PANTHER PTHR32089 168 178 3.1E-188 T 23-04-2016 RPE_RS09485 158f20633b3f9908e6660e1732d65394 584 PANTHER PTHR32089 207 268 3.1E-188 T 23-04-2016 RPE_RS09485 158f20633b3f9908e6660e1732d65394 584 SMART SM00304 233 286 1.4E-7 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS09485 158f20633b3f9908e6660e1732d65394 584 SMART SM00283 324 578 3.1E-54 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS09485 158f20633b3f9908e6660e1732d65394 584 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 381 577 5.2E-38 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS03895 4d0481e6279460139f5fd812a9a96c2a 589 PANTHER PTHR30033 1 586 6.0E-95 T 23-04-2016 RPE_RS03895 4d0481e6279460139f5fd812a9a96c2a 589 Pfam PF00460 Flagella basal body rod protein 9 37 2.1E-7 T 23-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RPE_RS03895 4d0481e6279460139f5fd812a9a96c2a 589 PANTHER PTHR30033:SF1 1 586 6.0E-95 T 23-04-2016 RPE_RS03895 4d0481e6279460139f5fd812a9a96c2a 589 SUPERFAMILY SSF64518 135 584 1.57E-12 T 23-04-2016 RPE_RS03895 4d0481e6279460139f5fd812a9a96c2a 589 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 523 583 5.1E-9 T 23-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RPE_RS03895 4d0481e6279460139f5fd812a9a96c2a 589 PRINTS PR01005 Flagellar hook-associated protein signature 159 183 2.3E-8 T 23-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RPE_RS03895 4d0481e6279460139f5fd812a9a96c2a 589 PRINTS PR01005 Flagellar hook-associated protein signature 13 36 2.3E-8 T 23-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RPE_RS03895 4d0481e6279460139f5fd812a9a96c2a 589 PRINTS PR01005 Flagellar hook-associated protein signature 551 575 2.3E-8 T 23-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RPE_RS03895 4d0481e6279460139f5fd812a9a96c2a 589 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 7 354 1.6E-76 T 23-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RPE_RS20305 920b1ad6f7aa7016eb04740b2b6a39af 1184 SMART SM00388 955 1024 9.2E-21 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS20305 920b1ad6f7aa7016eb04740b2b6a39af 1184 Pfam PF00989 PAS fold 820 885 1.2E-8 T 23-04-2016 IPR013767 PAS fold GO:0006355 RPE_RS20305 920b1ad6f7aa7016eb04740b2b6a39af 1184 PANTHER PTHR24423:SF421 15 142 3.6E-82 T 23-04-2016 RPE_RS20305 920b1ad6f7aa7016eb04740b2b6a39af 1184 PANTHER PTHR24423:SF421 818 1183 3.6E-82 T 23-04-2016 RPE_RS20305 920b1ad6f7aa7016eb04740b2b6a39af 1184 PANTHER PTHR24423 15 142 3.6E-82 T 23-04-2016 RPE_RS20305 920b1ad6f7aa7016eb04740b2b6a39af 1184 PANTHER PTHR24423 818 1183 3.6E-82 T 23-04-2016 RPE_RS20305 920b1ad6f7aa7016eb04740b2b6a39af 1184 SMART SM00091 12 82 260.0 T 23-04-2016 IPR000014 PAS domain RPE_RS20305 920b1ad6f7aa7016eb04740b2b6a39af 1184 SMART SM00091 678 744 34.0 T 23-04-2016 IPR000014 PAS domain RPE_RS20305 920b1ad6f7aa7016eb04740b2b6a39af 1184 SMART SM00091 820 886 9.8E-12 T 23-04-2016 IPR000014 PAS domain RPE_RS20305 920b1ad6f7aa7016eb04740b2b6a39af 1184 SMART SM00091 131 187 56.0 T 23-04-2016 IPR000014 PAS domain RPE_RS20305 920b1ad6f7aa7016eb04740b2b6a39af 1184 SUPERFAMILY SSF55874 1013 1177 2.05E-24 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS20305 920b1ad6f7aa7016eb04740b2b6a39af 1184 Pfam PF13188 PAS domain 681 718 6.6E-4 T 23-04-2016 IPR000014 PAS domain RPE_RS20305 920b1ad6f7aa7016eb04740b2b6a39af 1184 Pfam PF13188 PAS domain 27 68 0.29 T 23-04-2016 IPR000014 PAS domain RPE_RS20305 920b1ad6f7aa7016eb04740b2b6a39af 1184 Gene3D G3DSA:1.10.287.130 950 1009 1.5E-15 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS20305 920b1ad6f7aa7016eb04740b2b6a39af 1184 SUPERFAMILY SSF55785 831 944 6.77E-15 T 23-04-2016 IPR000014 PAS domain RPE_RS20305 920b1ad6f7aa7016eb04740b2b6a39af 1184 Pfam PF00512 His Kinase A (phospho-acceptor) domain 956 1024 8.8E-19 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS20305 920b1ad6f7aa7016eb04740b2b6a39af 1184 SMART SM00387 1070 1181 1.4E-9 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS20305 920b1ad6f7aa7016eb04740b2b6a39af 1184 Gene3D G3DSA:3.30.450.20 820 932 5.2E-14 T 23-04-2016 RPE_RS20305 920b1ad6f7aa7016eb04740b2b6a39af 1184 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1071 1176 7.5E-9 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS20305 920b1ad6f7aa7016eb04740b2b6a39af 1184 SUPERFAMILY SSF47384 941 1025 4.12E-18 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS20305 920b1ad6f7aa7016eb04740b2b6a39af 1184 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 820 942 6.4E-12 T 23-04-2016 IPR000014 PAS domain RPE_RS20305 920b1ad6f7aa7016eb04740b2b6a39af 1184 Gene3D G3DSA:3.30.565.10 1010 1177 1.1E-23 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS02720 ec5e61f5a0f97aadd9d9626acec4dda6 582 Gene3D G3DSA:1.10.287.130 345 413 1.6E-11 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS02720 ec5e61f5a0f97aadd9d9626acec4dda6 582 SUPERFAMILY SSF55874 417 577 4.32E-38 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS02720 ec5e61f5a0f97aadd9d9626acec4dda6 582 SMART SM00388 352 421 2.9E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS02720 ec5e61f5a0f97aadd9d9626acec4dda6 582 SUPERFAMILY SSF55781 166 323 7.29E-7 T 23-04-2016 IPR029016 GAF domain-like RPE_RS02720 ec5e61f5a0f97aadd9d9626acec4dda6 582 Pfam PF00512 His Kinase A (phospho-acceptor) domain 353 413 2.9E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS02720 ec5e61f5a0f97aadd9d9626acec4dda6 582 Gene3D G3DSA:3.40.50.2300 25 157 3.1E-12 T 23-04-2016 RPE_RS02720 ec5e61f5a0f97aadd9d9626acec4dda6 582 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 467 577 2.3E-22 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS02720 ec5e61f5a0f97aadd9d9626acec4dda6 582 PANTHER PTHR24423 191 301 2.9E-90 T 23-04-2016 RPE_RS02720 ec5e61f5a0f97aadd9d9626acec4dda6 582 PANTHER PTHR24423 86 166 2.9E-90 T 23-04-2016 RPE_RS02720 ec5e61f5a0f97aadd9d9626acec4dda6 582 PANTHER PTHR24423 324 581 2.9E-90 T 23-04-2016 RPE_RS02720 ec5e61f5a0f97aadd9d9626acec4dda6 582 PANTHER PTHR24423:SF482 191 301 2.9E-90 T 23-04-2016 RPE_RS02720 ec5e61f5a0f97aadd9d9626acec4dda6 582 PANTHER PTHR24423:SF482 86 166 2.9E-90 T 23-04-2016 RPE_RS02720 ec5e61f5a0f97aadd9d9626acec4dda6 582 PANTHER PTHR24423:SF482 324 581 2.9E-90 T 23-04-2016 RPE_RS02720 ec5e61f5a0f97aadd9d9626acec4dda6 582 SMART SM00387 466 579 9.3E-34 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS02720 ec5e61f5a0f97aadd9d9626acec4dda6 582 Gene3D G3DSA:3.30.565.10 424 578 6.8E-40 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS02720 ec5e61f5a0f97aadd9d9626acec4dda6 582 SUPERFAMILY SSF47384 339 414 1.53E-11 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS02720 ec5e61f5a0f97aadd9d9626acec4dda6 582 PRINTS PR00344 Bacterial sensor protein C-terminal signature 563 576 1.4E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS02720 ec5e61f5a0f97aadd9d9626acec4dda6 582 PRINTS PR00344 Bacterial sensor protein C-terminal signature 503 517 1.4E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS02720 ec5e61f5a0f97aadd9d9626acec4dda6 582 PRINTS PR00344 Bacterial sensor protein C-terminal signature 538 556 1.4E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS02720 ec5e61f5a0f97aadd9d9626acec4dda6 582 Pfam PF11849 Domain of unknown function (DUF3369) 148 314 2.7E-47 T 23-04-2016 IPR021800 Domain of unknown function DUF3369 RPE_RS02720 ec5e61f5a0f97aadd9d9626acec4dda6 582 SUPERFAMILY SSF52172 22 160 1.71E-12 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS02610 4310841e6a84c7c5a25d8d16dd9e8410 360 Pfam PF07143 CrtC N-terminal lipocalin domain 63 235 9.2E-58 T 23-04-2016 IPR010791 AttH domain RPE_RS02610 4310841e6a84c7c5a25d8d16dd9e8410 360 SUPERFAMILY SSF159245 40 360 4.45E-109 T 23-04-2016 RPE_RS02610 4310841e6a84c7c5a25d8d16dd9e8410 360 Pfam PF17186 Lipocalin-like domain 238 360 4.8E-39 T 23-04-2016 IPR033451 AttH, lipocalin-like domain RPE_RS02610 4310841e6a84c7c5a25d8d16dd9e8410 360 Gene3D G3DSA:2.40.370.10 240 360 2.2E-39 T 23-04-2016 IPR023374 AttH-like domain RPE_RS02610 4310841e6a84c7c5a25d8d16dd9e8410 360 Gene3D G3DSA:2.40.370.10 51 237 1.8E-74 T 23-04-2016 IPR023374 AttH-like domain RPE_RS02610 4310841e6a84c7c5a25d8d16dd9e8410 360 PANTHER PTHR38591 7 360 3.7E-102 T 23-04-2016 RPE_RS04685 09e9425679ce3e2c0205454bdef47e4f 787 PANTHER PTHR21600:SF2 463 768 2.0E-73 T 23-04-2016 RPE_RS04685 09e9425679ce3e2c0205454bdef47e4f 787 Pfam PF00849 RNA pseudouridylate synthase 528 660 3.1E-7 T 23-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RPE_RS04685 09e9425679ce3e2c0205454bdef47e4f 787 SMART SM00363 467 526 1.9E-11 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RPE_RS04685 09e9425679ce3e2c0205454bdef47e4f 787 Pfam PF01479 S4 domain 467 513 1.4E-12 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RPE_RS04685 09e9425679ce3e2c0205454bdef47e4f 787 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 565 579 - T 23-04-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 RPE_RS04685 09e9425679ce3e2c0205454bdef47e4f 787 SUPERFAMILY SSF55174 420 568 6.54E-26 T 23-04-2016 RPE_RS04685 09e9425679ce3e2c0205454bdef47e4f 787 Gene3D G3DSA:3.10.290.10 466 528 9.9E-23 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RPE_RS04685 09e9425679ce3e2c0205454bdef47e4f 787 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 532 689 6.4E-39 T 23-04-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 RPE_RS04685 09e9425679ce3e2c0205454bdef47e4f 787 SUPERFAMILY SSF55120 525 686 6.72E-36 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RPE_RS04685 09e9425679ce3e2c0205454bdef47e4f 787 PANTHER PTHR21600 463 768 2.0E-73 T 23-04-2016 RPE_RS12435 170cd71de268dd77b3a8af745abb7126 416 Pfam PF00589 Phage integrase family 171 325 1.3E-5 T 23-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RPE_RS12435 170cd71de268dd77b3a8af745abb7126 416 SUPERFAMILY SSF56349 169 326 3.83E-15 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RPE_RS12435 170cd71de268dd77b3a8af745abb7126 416 SUPERFAMILY SSF56349 351 379 3.83E-15 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RPE_RS12435 170cd71de268dd77b3a8af745abb7126 416 Gene3D G3DSA:1.10.150.130 50 136 1.6E-4 T 23-04-2016 IPR023109 Integrase/recombinase, N-terminal RPE_RS12435 170cd71de268dd77b3a8af745abb7126 416 Gene3D G3DSA:1.10.443.10 169 378 3.4E-17 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 RPE_RS01220 9289a689378802fb4b293f4907bb078f 456 Pfam PF01471 Putative peptidoglycan binding domain 57 106 2.6E-5 T 23-04-2016 IPR002477 Peptidoglycan binding-like RPE_RS01220 9289a689378802fb4b293f4907bb078f 456 Pfam PF13365 Trypsin-like peptidase domain 271 397 1.0E-6 T 23-04-2016 RPE_RS01220 9289a689378802fb4b293f4907bb078f 456 Gene3D G3DSA:1.10.101.10 57 111 6.9E-6 T 23-04-2016 IPR002477 Peptidoglycan binding-like RPE_RS01220 9289a689378802fb4b293f4907bb078f 456 SUPERFAMILY SSF47090 54 111 1.07E-7 T 23-04-2016 IPR002477 Peptidoglycan binding-like RPE_RS01220 9289a689378802fb4b293f4907bb078f 456 SUPERFAMILY SSF50494 228 403 1.03E-14 T 23-04-2016 IPR009003 Peptidase S1, PA clan RPE_RS01220 9289a689378802fb4b293f4907bb078f 456 Gene3D G3DSA:2.40.10.10 262 330 8.7E-6 T 23-04-2016 RPE_RS10450 a7fb054b491f77edc8b152e8693d8037 331 SUPERFAMILY SSF51430 1 310 1.57E-101 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RPE_RS10450 a7fb054b491f77edc8b152e8693d8037 331 Pfam PF00248 Aldo/keto reductase family 16 309 1.6E-74 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RPE_RS10450 a7fb054b491f77edc8b152e8693d8037 331 PANTHER PTHR11732:SF215 1 323 7.2E-185 T 23-04-2016 RPE_RS10450 a7fb054b491f77edc8b152e8693d8037 331 Gene3D G3DSA:3.20.20.100 1 323 3.6E-114 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RPE_RS10450 a7fb054b491f77edc8b152e8693d8037 331 PANTHER PTHR11732 1 323 7.2E-185 T 23-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta RPE_RS17440 7bc4b62ec6714dc304501a44206d8707 222 PANTHER PTHR30055 1 200 2.7E-38 T 23-04-2016 RPE_RS17440 7bc4b62ec6714dc304501a44206d8707 222 PANTHER PTHR30055:SF76 1 200 2.7E-38 T 23-04-2016 RPE_RS17440 7bc4b62ec6714dc304501a44206d8707 222 SUPERFAMILY SSF46689 3 77 2.22E-19 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS17440 7bc4b62ec6714dc304501a44206d8707 222 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 146 200 5.7E-13 T 23-04-2016 RPE_RS17440 7bc4b62ec6714dc304501a44206d8707 222 Gene3D G3DSA:1.10.10.60 4 54 1.4E-21 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS17440 7bc4b62ec6714dc304501a44206d8707 222 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 58 1.5E-17 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS17440 7bc4b62ec6714dc304501a44206d8707 222 Gene3D G3DSA:1.10.357.10 55 207 1.5E-32 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RPE_RS17440 7bc4b62ec6714dc304501a44206d8707 222 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 1.4E-9 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS17440 7bc4b62ec6714dc304501a44206d8707 222 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 1.4E-9 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS11155 3efbe1036c752f37050f44a2ee8fd320 258 SUPERFAMILY SSF53790 4 247 5.89E-44 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RPE_RS11155 3efbe1036c752f37050f44a2ee8fd320 258 PANTHER PTHR21091:SF9 1 171 2.7E-36 T 23-04-2016 RPE_RS11155 3efbe1036c752f37050f44a2ee8fd320 258 TIGRFAM TIGR01466 cobJ_cbiH: precorrin-3B C17-methyltransferase 10 254 1.4E-82 T 23-04-2016 IPR006363 Precorrin-3B C17-methyltransferase domain GO:0008168|GO:0009236 RPE_RS11155 3efbe1036c752f37050f44a2ee8fd320 258 PANTHER PTHR21091 1 171 2.7E-36 T 23-04-2016 RPE_RS11155 3efbe1036c752f37050f44a2ee8fd320 258 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 10 218 1.9E-28 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RPE_RS11155 3efbe1036c752f37050f44a2ee8fd320 258 Gene3D G3DSA:3.40.1010.10 7 122 1.8E-26 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 RPE_RS11155 3efbe1036c752f37050f44a2ee8fd320 258 Gene3D G3DSA:3.30.950.10 123 234 9.3E-5 T 23-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 RPE_RS21375 aa7486a46c0e82af509fea123bca5273 499 Gene3D G3DSA:3.40.120.10 191 268 6.6E-27 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS21375 aa7486a46c0e82af509fea123bca5273 499 PANTHER PTHR22573:SF28 4 496 1.2E-175 T 23-04-2016 RPE_RS21375 aa7486a46c0e82af509fea123bca5273 499 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 252 267 2.2E-12 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS21375 aa7486a46c0e82af509fea123bca5273 499 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 115 129 2.2E-12 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS21375 aa7486a46c0e82af509fea123bca5273 499 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 189 208 2.2E-12 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS21375 aa7486a46c0e82af509fea123bca5273 499 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 223 236 2.2E-12 T 23-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS21375 aa7486a46c0e82af509fea123bca5273 499 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 27 153 5.0E-26 T 23-04-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS21375 aa7486a46c0e82af509fea123bca5273 499 Gene3D G3DSA:3.40.120.10 269 390 4.6E-27 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS21375 aa7486a46c0e82af509fea123bca5273 499 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 176 272 2.0E-25 T 23-04-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS21375 aa7486a46c0e82af509fea123bca5273 499 SUPERFAMILY SSF53738 21 155 2.43E-30 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS21375 aa7486a46c0e82af509fea123bca5273 499 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 406 484 1.1E-6 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS21375 aa7486a46c0e82af509fea123bca5273 499 SUPERFAMILY SSF53738 174 273 2.98E-27 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS21375 aa7486a46c0e82af509fea123bca5273 499 PANTHER PTHR22573 4 496 1.2E-175 T 23-04-2016 RPE_RS21375 aa7486a46c0e82af509fea123bca5273 499 Gene3D G3DSA:3.30.310.50 392 486 5.4E-19 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS21375 aa7486a46c0e82af509fea123bca5273 499 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 278 390 1.9E-16 T 23-04-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS21375 aa7486a46c0e82af509fea123bca5273 499 SUPERFAMILY SSF55957 390 488 1.26E-14 T 23-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS21375 aa7486a46c0e82af509fea123bca5273 499 Gene3D G3DSA:3.40.120.10 26 152 6.1E-25 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS21375 aa7486a46c0e82af509fea123bca5273 499 SUPERFAMILY SSF53738 278 387 1.65E-17 T 23-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RPE_RS00310 924436335bc44abc869f5f3aad5eebf3 577 Gene3D G3DSA:1.25.40.10 87 202 1.4E-6 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS00310 924436335bc44abc869f5f3aad5eebf3 577 Gene3D G3DSA:1.25.40.10 241 347 1.4E-6 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS00310 924436335bc44abc869f5f3aad5eebf3 577 PIRSF PIRSF031802 1 571 3.8E-215 T 23-04-2016 IPR016982 Uncharacterised conserved protein UCP031802 RPE_RS00310 924436335bc44abc869f5f3aad5eebf3 577 SUPERFAMILY SSF48452 89 292 4.5E-7 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS00310 924436335bc44abc869f5f3aad5eebf3 577 Pfam PF07219 HemY protein N-terminus 26 132 6.8E-26 T 23-04-2016 IPR010817 HemY, N-terminal UniPathway: UPA00252 RPE_RS02570 24152bc0bff0626121d83d8cae628c4d 137 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 14 122 4.6E-14 T 23-04-2016 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit GO:0016627 UniPathway: UPA00223 RPE_RS02570 24152bc0bff0626121d83d8cae628c4d 137 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 27 130 1.2E-28 T 23-04-2016 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 UniPathway: UPA00223 RPE_RS02570 24152bc0bff0626121d83d8cae628c4d 137 SUPERFAMILY SSF81343 22 133 3.11E-27 T 23-04-2016 RPE_RS02570 24152bc0bff0626121d83d8cae628c4d 137 Gene3D G3DSA:1.20.1300.10 20 132 1.6E-27 T 23-04-2016 RPE_RS07600 9cfaf414132851a7ebcb69c7f173d150 313 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 30 105 2.7E-5 T 23-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 RPE_RS07600 9cfaf414132851a7ebcb69c7f173d150 313 Gene3D G3DSA:3.30.360.10 117 282 2.1E-18 T 23-04-2016 RPE_RS07600 9cfaf414132851a7ebcb69c7f173d150 313 SUPERFAMILY SSF55347 111 275 3.27E-19 T 23-04-2016 RPE_RS07600 9cfaf414132851a7ebcb69c7f173d150 313 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 117 233 5.8E-9 T 23-04-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 RPE_RS07600 9cfaf414132851a7ebcb69c7f173d150 313 Gene3D G3DSA:3.40.50.720 13 116 4.8E-17 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS07600 9cfaf414132851a7ebcb69c7f173d150 313 PANTHER PTHR22604 36 291 4.4E-27 T 23-04-2016 RPE_RS07600 9cfaf414132851a7ebcb69c7f173d150 313 SUPERFAMILY SSF51735 1 173 7.88E-19 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS07600 9cfaf414132851a7ebcb69c7f173d150 313 PANTHER PTHR22604:SF123 36 291 4.4E-27 T 23-04-2016 RPE_RS06175 bf78c9b5703e511448b7848622c9238e 1182 Gene3D G3DSA:2.40.100.10 898 1037 1.3E-44 T 23-04-2016 IPR029000 Cyclophilin-like domain RPE_RS06175 bf78c9b5703e511448b7848622c9238e 1182 Gene3D G3DSA:2.40.100.10 626 751 5.2E-31 T 23-04-2016 IPR029000 Cyclophilin-like domain RPE_RS06175 bf78c9b5703e511448b7848622c9238e 1182 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 449 749 4.6E-80 T 23-04-2016 IPR003778 Carboxyltransferase domain, subdomain A and B RPE_RS06175 bf78c9b5703e511448b7848622c9238e 1182 Pfam PF02785 Biotin carboxylase C-terminal domain 336 440 2.1E-33 T 23-04-2016 IPR005482 Biotin carboxylase, C-terminal RPE_RS06175 bf78c9b5703e511448b7848622c9238e 1182 Gene3D G3DSA:3.30.1490.20 129 201 3.4E-24 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RPE_RS06175 bf78c9b5703e511448b7848622c9238e 1182 SUPERFAMILY SSF56059 83 349 4.77E-62 T 23-04-2016 RPE_RS06175 bf78c9b5703e511448b7848622c9238e 1182 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RPE_RS06175 bf78c9b5703e511448b7848622c9238e 1182 SUPERFAMILY SSF51246 330 441 2.98E-34 T 23-04-2016 IPR011054 Rudiment single hybrid motif RPE_RS06175 bf78c9b5703e511448b7848622c9238e 1182 TIGRFAM TIGR02712 urea_carbox: urea carboxylase 2 1179 0.0 T 23-04-2016 IPR014084 Urea carboxylase KEGG: 00220+3.5.1.54+6.3.4.6|KEGG: 00791+3.5.1.54+6.3.4.6|MetaCyc: PWY-5169|MetaCyc: PWY-5703|UniPathway: UPA00258|UniPathway: UPA00258 RPE_RS06175 bf78c9b5703e511448b7848622c9238e 1182 Pfam PF02682 Allophanate hydrolase subunit 1 783 1004 9.0E-49 T 23-04-2016 IPR003833 Carboxyltransferase domain, subdomain C and D RPE_RS06175 bf78c9b5703e511448b7848622c9238e 1182 SMART SM00796 781 1014 2.0E-113 T 23-04-2016 IPR003833 Carboxyltransferase domain, subdomain C and D RPE_RS06175 bf78c9b5703e511448b7848622c9238e 1182 PANTHER PTHR18866:SF91 1 540 4.2E-282 T 23-04-2016 RPE_RS06175 bf78c9b5703e511448b7848622c9238e 1182 PANTHER PTHR18866:SF91 1080 1180 4.2E-282 T 23-04-2016 RPE_RS06175 bf78c9b5703e511448b7848622c9238e 1182 Pfam PF02626 Allophanate hydrolase subunit 2 472 745 1.1E-83 T 23-04-2016 IPR003778 Carboxyltransferase domain, subdomain A and B RPE_RS06175 bf78c9b5703e511448b7848622c9238e 1182 SUPERFAMILY SSF52440 1 112 2.09E-43 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RPE_RS06175 bf78c9b5703e511448b7848622c9238e 1182 Pfam PF00364 Biotin-requiring enzyme 1107 1178 4.1E-15 T 23-04-2016 IPR000089 Biotin/lipoyl attachment RPE_RS06175 bf78c9b5703e511448b7848622c9238e 1182 Gene3D G3DSA:3.30.1360.40 783 862 1.2E-25 T 23-04-2016 IPR024946 Arginine repressor C-terminal-like domain RPE_RS06175 bf78c9b5703e511448b7848622c9238e 1182 SMART SM00878 336 440 1.9E-49 T 23-04-2016 IPR005482 Biotin carboxylase, C-terminal RPE_RS06175 bf78c9b5703e511448b7848622c9238e 1182 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 152 166 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RPE_RS06175 bf78c9b5703e511448b7848622c9238e 1182 Gene3D G3DSA:2.40.50.100 1110 1180 2.0E-20 T 23-04-2016 RPE_RS06175 bf78c9b5703e511448b7848622c9238e 1182 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 1.7E-40 T 23-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain RPE_RS06175 bf78c9b5703e511448b7848622c9238e 1182 SUPERFAMILY SSF51230 1105 1180 2.62E-17 T 23-04-2016 IPR011053 Single hybrid motif RPE_RS06175 bf78c9b5703e511448b7848622c9238e 1182 SMART SM00797 471 762 1.4E-153 T 23-04-2016 IPR003778 Carboxyltransferase domain, subdomain A and B RPE_RS06175 bf78c9b5703e511448b7848622c9238e 1182 SUPERFAMILY SSF50891 898 1030 9.86E-26 T 23-04-2016 IPR029000 Cyclophilin-like domain RPE_RS06175 bf78c9b5703e511448b7848622c9238e 1182 PANTHER PTHR18866 1 540 4.2E-282 T 23-04-2016 RPE_RS06175 bf78c9b5703e511448b7848622c9238e 1182 PANTHER PTHR18866 1080 1180 4.2E-282 T 23-04-2016 RPE_RS06175 bf78c9b5703e511448b7848622c9238e 1182 SUPERFAMILY SSF50891 626 751 6.83E-31 T 23-04-2016 IPR029000 Cyclophilin-like domain RPE_RS06175 bf78c9b5703e511448b7848622c9238e 1182 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 319 4.7E-63 T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RPE_RS06175 bf78c9b5703e511448b7848622c9238e 1182 Gene3D G3DSA:3.40.50.20 1 128 1.3E-44 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RPE_RS06175 bf78c9b5703e511448b7848622c9238e 1182 SUPERFAMILY SSF160467 783 874 2.75E-19 T 23-04-2016 RPE_RS06175 bf78c9b5703e511448b7848622c9238e 1182 Gene3D G3DSA:3.30.470.20 205 440 1.1E-88 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RPE_RS02740 76f343167332ba642a8740e036265c83 398 Pfam PF13458 Periplasmic binding protein 37 374 8.1E-68 T 23-04-2016 IPR028081 Leucine-binding protein domain RPE_RS02740 76f343167332ba642a8740e036265c83 398 PANTHER PTHR30483 1 390 2.6E-83 T 23-04-2016 RPE_RS02740 76f343167332ba642a8740e036265c83 398 Gene3D G3DSA:3.40.50.2300 33 160 1.7E-42 T 23-04-2016 RPE_RS02740 76f343167332ba642a8740e036265c83 398 Gene3D G3DSA:3.40.50.2300 311 365 1.7E-42 T 23-04-2016 RPE_RS02740 76f343167332ba642a8740e036265c83 398 SUPERFAMILY SSF53822 37 383 1.63E-84 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RPE_RS02740 76f343167332ba642a8740e036265c83 398 PANTHER PTHR30483:SF13 1 390 2.6E-83 T 23-04-2016 RPE_RS02740 76f343167332ba642a8740e036265c83 398 Gene3D G3DSA:3.40.50.2300 166 310 1.3E-20 T 23-04-2016 RPE_RS07590 338c157e61fd6a17f4b586daecb46b3b 331 PANTHER PTHR10366 5 326 1.3E-105 T 23-04-2016 RPE_RS07590 338c157e61fd6a17f4b586daecb46b3b 331 Pfam PF01370 NAD dependent epimerase/dehydratase family 7 242 4.8E-55 T 23-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 RPE_RS07590 338c157e61fd6a17f4b586daecb46b3b 331 PANTHER PTHR10366:SF466 5 326 1.3E-105 T 23-04-2016 RPE_RS07590 338c157e61fd6a17f4b586daecb46b3b 331 Gene3D G3DSA:3.40.50.720 4 170 5.8E-49 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS07590 338c157e61fd6a17f4b586daecb46b3b 331 SUPERFAMILY SSF51735 2 308 1.26E-87 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS07590 338c157e61fd6a17f4b586daecb46b3b 331 Gene3D G3DSA:3.90.25.10 171 305 2.2E-30 T 23-04-2016 RPE_RS11795 7a63c2eab3da54f2f199934687d16c67 121 SUPERFAMILY SSF55856 36 120 4.19E-19 T 23-04-2016 IPR001199 Cytochrome b5-like heme/steroid binding domain RPE_RS11795 7a63c2eab3da54f2f199934687d16c67 121 PANTHER PTHR19370 41 121 1.3E-12 T 23-04-2016 RPE_RS11795 7a63c2eab3da54f2f199934687d16c67 121 Gene3D G3DSA:3.10.120.10 38 120 2.1E-22 T 23-04-2016 IPR001199 Cytochrome b5-like heme/steroid binding domain RPE_RS11795 7a63c2eab3da54f2f199934687d16c67 121 SMART SM01117 43 120 5.5E-18 T 23-04-2016 IPR001199 Cytochrome b5-like heme/steroid binding domain RPE_RS11795 7a63c2eab3da54f2f199934687d16c67 121 Pfam PF00173 Cytochrome b5-like Heme/Steroid binding domain 44 119 4.8E-14 T 23-04-2016 IPR001199 Cytochrome b5-like heme/steroid binding domain RPE_RS15695 aafcd8e23e7dbeb27f19d96db7782f5c 339 Gene3D G3DSA:1.10.3470.10 9 332 8.1E-91 T 23-04-2016 IPR029022 ABC transporter, BtuC-like RPE_RS15695 aafcd8e23e7dbeb27f19d96db7782f5c 339 PANTHER PTHR30472 1 335 7.2E-89 T 23-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 RPE_RS15695 aafcd8e23e7dbeb27f19d96db7782f5c 339 SUPERFAMILY SSF81345 10 329 4.32E-70 T 23-04-2016 IPR029022 ABC transporter, BtuC-like RPE_RS15695 aafcd8e23e7dbeb27f19d96db7782f5c 339 Pfam PF01032 FecCD transport family 21 329 7.9E-82 T 23-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 RPE_RS19710 e5ab53029883e4de267fd6df02d25f17 193 Pfam PF01814 Hemerythrin HHE cation binding domain 4 138 3.3E-15 T 23-04-2016 IPR012312 Haemerythrin-like RPE_RS19710 e5ab53029883e4de267fd6df02d25f17 193 Gene3D G3DSA:1.20.120.520 2 158 8.1E-23 T 23-04-2016 RPE_RS19710 e5ab53029883e4de267fd6df02d25f17 193 PANTHER PTHR39966 1 189 8.0E-17 T 23-04-2016 RPE_RS14930 ee2f6aabf49270dbbc45aa4e991901a3 418 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 7 415 9.9E-109 T 23-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 RPE_RS14930 ee2f6aabf49270dbbc45aa4e991901a3 418 Pfam PF00579 tRNA synthetases class I (W and Y) 34 327 2.2E-69 T 23-04-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS14930 ee2f6aabf49270dbbc45aa4e991901a3 418 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 6 417 41.881 T 23-04-2016 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 RPE_RS14930 ee2f6aabf49270dbbc45aa4e991901a3 418 Gene3D G3DSA:1.10.240.10 239 320 2.9E-36 T 23-04-2016 RPE_RS14930 ee2f6aabf49270dbbc45aa4e991901a3 418 SUPERFAMILY SSF55174 309 416 8.83E-13 T 23-04-2016 RPE_RS14930 ee2f6aabf49270dbbc45aa4e991901a3 418 SUPERFAMILY SSF52374 7 326 1.35E-94 T 23-04-2016 RPE_RS14930 ee2f6aabf49270dbbc45aa4e991901a3 418 Gene3D G3DSA:3.10.290.10 321 416 8.0E-26 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RPE_RS14930 ee2f6aabf49270dbbc45aa4e991901a3 418 PANTHER PTHR11766 7 416 1.0E-173 T 23-04-2016 IPR024088 Tyrosine-tRNA ligase, bacterial-type GO:0004831 KEGG: 00970+6.1.1.1 RPE_RS14930 ee2f6aabf49270dbbc45aa4e991901a3 418 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 189 211 1.1E-24 T 23-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 RPE_RS14930 ee2f6aabf49270dbbc45aa4e991901a3 418 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 48 70 1.1E-24 T 23-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 RPE_RS14930 ee2f6aabf49270dbbc45aa4e991901a3 418 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 222 234 1.1E-24 T 23-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 RPE_RS14930 ee2f6aabf49270dbbc45aa4e991901a3 418 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 168 183 1.1E-24 T 23-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 RPE_RS14930 ee2f6aabf49270dbbc45aa4e991901a3 418 Gene3D G3DSA:3.40.50.620 4 238 2.6E-94 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS21465 f0d31821c7e004b941df30e61f3e357f 264 Pfam PF10670 Domain of unknown function (DUF4198) 21 238 5.2E-46 T 23-04-2016 IPR019613 Protein of unknown function DUF4198 RPE_RS14120 ad95ae29da00a3809ca4a09b3f1daf39 383 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 68 106 - T 23-04-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 RPE_RS14120 ad95ae29da00a3809ca4a09b3f1daf39 383 Pfam PF01872 RibD C-terminal domain 165 377 1.8E-37 T 23-04-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 RPE_RS14120 ad95ae29da00a3809ca4a09b3f1daf39 383 Gene3D G3DSA:3.40.430.10 146 379 8.4E-62 T 23-04-2016 IPR024072 Dihydrofolate reductase-like domain RPE_RS14120 ad95ae29da00a3809ca4a09b3f1daf39 383 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 164 377 6.1E-46 T 23-04-2016 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 RPE_RS14120 ad95ae29da00a3809ca4a09b3f1daf39 383 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 21 117 8.2E-17 T 23-04-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 RPE_RS14120 ad95ae29da00a3809ca4a09b3f1daf39 383 SUPERFAMILY SSF53927 21 162 5.16E-43 T 23-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 RPE_RS14120 ad95ae29da00a3809ca4a09b3f1daf39 383 PANTHER PTHR11079:SF10 7 239 2.8E-56 T 23-04-2016 RPE_RS14120 ad95ae29da00a3809ca4a09b3f1daf39 383 Gene3D G3DSA:3.40.140.10 21 145 8.8E-29 T 23-04-2016 RPE_RS14120 ad95ae29da00a3809ca4a09b3f1daf39 383 SUPERFAMILY SSF53597 163 379 6.31E-48 T 23-04-2016 IPR024072 Dihydrofolate reductase-like domain RPE_RS14120 ad95ae29da00a3809ca4a09b3f1daf39 383 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 25 378 8.8E-97 T 23-04-2016 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525|UniPathway: UPA00275|UniPathway: UPA00275 RPE_RS14120 ad95ae29da00a3809ca4a09b3f1daf39 383 PIRSF PIRSF006769 16 383 2.9E-117 T 23-04-2016 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525|UniPathway: UPA00275|UniPathway: UPA00275 RPE_RS14120 ad95ae29da00a3809ca4a09b3f1daf39 383 PANTHER PTHR11079 7 239 2.8E-56 T 23-04-2016 RPE_RS01340 80295fa8e21ad9d69479804377ba26e7 430 PANTHER PTHR11063 18 429 1.0E-160 T 23-04-2016 RPE_RS01340 80295fa8e21ad9d69479804377ba26e7 430 Pfam PF00171 Aldehyde dehydrogenase family 27 286 3.9E-10 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RPE_RS01340 80295fa8e21ad9d69479804377ba26e7 430 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 336 357 - T 23-04-2016 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 RPE_RS01340 80295fa8e21ad9d69479804377ba26e7 430 Gene3D G3DSA:3.40.309.10 240 387 5.8E-34 T 23-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RPE_RS01340 80295fa8e21ad9d69479804377ba26e7 430 Gene3D G3DSA:3.40.605.10 18 237 2.4E-90 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RPE_RS01340 80295fa8e21ad9d69479804377ba26e7 430 Gene3D G3DSA:3.40.605.10 388 429 2.4E-90 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RPE_RS01340 80295fa8e21ad9d69479804377ba26e7 430 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 17 429 38.414 T 23-04-2016 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 RPE_RS01340 80295fa8e21ad9d69479804377ba26e7 430 PANTHER PTHR11063:SF8 18 429 1.0E-160 T 23-04-2016 RPE_RS01340 80295fa8e21ad9d69479804377ba26e7 430 SUPERFAMILY SSF53720 19 429 1.17E-103 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RPE_RS01340 80295fa8e21ad9d69479804377ba26e7 430 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 25 419 1.7E-128 T 23-04-2016 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 RPE_RS01340 80295fa8e21ad9d69479804377ba26e7 430 PIRSF PIRSF000151 12 430 1.4E-158 T 23-04-2016 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 RPE_RS02970 c785f238d92d894c400dee9a12bf6a90 596 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 567 587 1.1E-7 T 23-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RPE_RS02970 c785f238d92d894c400dee9a12bf6a90 596 Pfam PF02653 Branched-chain amino acid transport system / permease component 32 306 1.4E-34 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RPE_RS02970 c785f238d92d894c400dee9a12bf6a90 596 PANTHER PTHR30482:SF2 10 347 1.7E-86 T 23-04-2016 RPE_RS02970 c785f238d92d894c400dee9a12bf6a90 596 Gene3D G3DSA:3.40.50.300 346 585 1.3E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02970 c785f238d92d894c400dee9a12bf6a90 596 Pfam PF00005 ABC transporter 364 517 1.5E-24 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS02970 c785f238d92d894c400dee9a12bf6a90 596 PANTHER PTHR30482 10 347 1.7E-86 T 23-04-2016 RPE_RS02970 c785f238d92d894c400dee9a12bf6a90 596 SMART SM00382 372 565 7.8E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS02970 c785f238d92d894c400dee9a12bf6a90 596 SUPERFAMILY SSF52540 347 587 6.16E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02265 b45e3f2059d08bf6018fabf4da78d0f3 102 PANTHER PTHR33175 1 94 6.1E-46 T 23-04-2016 RPE_RS02265 b45e3f2059d08bf6018fabf4da78d0f3 102 Pfam PF00216 Bacterial DNA-binding protein 1 91 1.3E-30 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RPE_RS02265 b45e3f2059d08bf6018fabf4da78d0f3 102 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 1 92 1.6E-44 T 23-04-2016 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 RPE_RS02265 b45e3f2059d08bf6018fabf4da78d0f3 102 PANTHER PTHR33175:SF5 1 94 6.1E-46 T 23-04-2016 RPE_RS02265 b45e3f2059d08bf6018fabf4da78d0f3 102 Hamap MF_00381 Integration host factor subunit beta [ihfB]. 1 94 30.501 T 23-04-2016 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 RPE_RS02265 b45e3f2059d08bf6018fabf4da78d0f3 102 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 47 66 - T 23-04-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 RPE_RS02265 b45e3f2059d08bf6018fabf4da78d0f3 102 SUPERFAMILY SSF47729 1 93 3.24E-30 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RPE_RS02265 b45e3f2059d08bf6018fabf4da78d0f3 102 SMART SM00411 1 91 2.1E-41 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RPE_RS02265 b45e3f2059d08bf6018fabf4da78d0f3 102 Gene3D G3DSA:4.10.520.10 1 92 8.7E-34 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RPE_RS02265 b45e3f2059d08bf6018fabf4da78d0f3 102 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 9.0E-18 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RPE_RS02265 b45e3f2059d08bf6018fabf4da78d0f3 102 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 9.0E-18 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RPE_RS02265 b45e3f2059d08bf6018fabf4da78d0f3 102 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 9.0E-18 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RPE_RS01430 8cfb84157e0e7bc83504dd6713c29ed7 159 PANTHER PTHR34183:SF2 58 159 8.0E-45 T 23-04-2016 RPE_RS01430 8cfb84157e0e7bc83504dd6713c29ed7 159 SUPERFAMILY SSF50685 70 151 1.05E-10 T 23-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain RPE_RS01430 8cfb84157e0e7bc83504dd6713c29ed7 159 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 72 158 1.4E-32 T 23-04-2016 IPR012997 Rare lipoprotein A RPE_RS01430 8cfb84157e0e7bc83504dd6713c29ed7 159 Pfam PF03330 Lytic transglycolase 71 154 3.6E-24 T 23-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain RPE_RS01430 8cfb84157e0e7bc83504dd6713c29ed7 159 PANTHER PTHR34183 58 159 8.0E-45 T 23-04-2016 RPE_RS24640 65ac9acfd56dbed2229e4d1ec57e1390 232 Gene3D G3DSA:3.40.50.150 30 200 4.5E-29 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS24640 65ac9acfd56dbed2229e4d1ec57e1390 232 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 40 172 1.1E-22 T 23-04-2016 IPR006342 Methyltransferase FkbM KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- RPE_RS24640 65ac9acfd56dbed2229e4d1ec57e1390 232 Pfam PF05050 Methyltransferase FkbM domain 42 195 3.3E-16 T 23-04-2016 IPR006342 Methyltransferase FkbM KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- RPE_RS24640 65ac9acfd56dbed2229e4d1ec57e1390 232 SUPERFAMILY SSF53335 17 201 9.65E-36 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS14775 b97698ac46271c1f0ce49bcdb5648078 600 SUPERFAMILY SSF53474 240 535 5.51E-39 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS14775 b97698ac46271c1f0ce49bcdb5648078 600 PANTHER PTHR36837:SF2 23 599 6.5E-292 T 23-04-2016 RPE_RS14775 b97698ac46271c1f0ce49bcdb5648078 600 Pfam PF00561 alpha/beta hydrolase fold 317 524 5.3E-8 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS14775 b97698ac46271c1f0ce49bcdb5648078 600 TIGRFAM TIGR01838 PHA_synth_I: poly(R)-hydroxyalkanoic acid synthase, class I 70 597 1.3E-233 T 23-04-2016 IPR010963 Poly(R)-hydroxyalkanoic acid synthase, class I GO:0005737|GO:0016746|GO:0042619 KEGG: 00061+2.3.1.-|KEGG: 00253+2.3.1.-|KEGG: 00261+2.3.1.-|KEGG: 00310+2.3.1.-|KEGG: 00330+2.3.1.-|KEGG: 00332+2.3.1.-|KEGG: 00340+2.3.1.-|KEGG: 00350+2.3.1.-|KEGG: 00564+2.3.1.-|KEGG: 00565+2.3.1.-|KEGG: 00604+2.3.1.-|KEGG: 00623+2.3.1.-|KEGG: 00626+2.3.1.-|KEGG: 00627+2.3.1.-|KEGG: 00642+2.3.1.-|KEGG: 00650+2.3.1.-|KEGG: 00680+2.3.1.-|KEGG: 00903+2.3.1.-|KEGG: 00904+2.3.1.-|KEGG: 00906+2.3.1.-|KEGG: 00940+2.3.1.-|KEGG: 00942+2.3.1.-|KEGG: 00950+2.3.1.-|KEGG: 00960+2.3.1.-|KEGG: 00965+2.3.1.-|UniPathway: UPA00917 RPE_RS14775 b97698ac46271c1f0ce49bcdb5648078 600 Pfam PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus 110 282 1.1E-79 T 23-04-2016 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 KEGG: 00061+2.3.1.-|KEGG: 00253+2.3.1.-|KEGG: 00261+2.3.1.-|KEGG: 00310+2.3.1.-|KEGG: 00330+2.3.1.-|KEGG: 00332+2.3.1.-|KEGG: 00340+2.3.1.-|KEGG: 00350+2.3.1.-|KEGG: 00564+2.3.1.-|KEGG: 00565+2.3.1.-|KEGG: 00604+2.3.1.-|KEGG: 00623+2.3.1.-|KEGG: 00626+2.3.1.-|KEGG: 00627+2.3.1.-|KEGG: 00642+2.3.1.-|KEGG: 00650+2.3.1.-|KEGG: 00680+2.3.1.-|KEGG: 00903+2.3.1.-|KEGG: 00904+2.3.1.-|KEGG: 00906+2.3.1.-|KEGG: 00940+2.3.1.-|KEGG: 00942+2.3.1.-|KEGG: 00950+2.3.1.-|KEGG: 00960+2.3.1.-|KEGG: 00965+2.3.1.- RPE_RS14775 b97698ac46271c1f0ce49bcdb5648078 600 Gene3D G3DSA:3.40.50.1820 213 570 9.3E-32 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS14775 b97698ac46271c1f0ce49bcdb5648078 600 PANTHER PTHR36837 23 599 6.5E-292 T 23-04-2016 RPE_RS06130 4d92f47ee54fae827faa213248fcdf88 454 PANTHER PTHR39338 1 454 1.3E-195 T 23-04-2016 RPE_RS06130 4d92f47ee54fae827faa213248fcdf88 454 Pfam PF05762 VWA domain containing CoxE-like protein 232 443 8.7E-42 T 23-04-2016 IPR008912 Uncharacterised protein family CoxE-like RPE_RS06130 4d92f47ee54fae827faa213248fcdf88 454 PANTHER PTHR39338:SF2 1 454 1.3E-195 T 23-04-2016 RPE_RS06130 4d92f47ee54fae827faa213248fcdf88 454 SUPERFAMILY SSF53300 286 412 1.48E-5 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS06130 4d92f47ee54fae827faa213248fcdf88 454 PIRSF PIRSF010256 1 452 9.6E-120 T 23-04-2016 IPR011195 Uncharacterised conserved protein UCP010256 RPE_RS13600 4f8e1e1ab6b8d7b548334afb687ce876 156 PANTHER PTHR10516 3 155 3.1E-62 T 23-04-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type RPE_RS13600 4f8e1e1ab6b8d7b548334afb687ce876 156 SUPERFAMILY SSF54534 24 154 1.2E-44 T 23-04-2016 RPE_RS13600 4f8e1e1ab6b8d7b548334afb687ce876 156 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 58 152 2.2E-35 T 23-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 RPE_RS13600 4f8e1e1ab6b8d7b548334afb687ce876 156 Gene3D G3DSA:3.10.50.40 36 154 9.4E-50 T 23-04-2016 RPE_RS11150 1940e4b71ddffd24fcdd10d27791d81f 252 TIGRFAM TIGR00715 precor6x_red: precorrin-6x reductase 2 242 6.6E-40 T 23-04-2016 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 RPE_RS11150 1940e4b71ddffd24fcdd10d27791d81f 252 Pfam PF02571 Precorrin-6x reductase CbiJ/CobK 2 241 3.9E-67 T 23-04-2016 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 RPE_RS11150 1940e4b71ddffd24fcdd10d27791d81f 252 PANTHER PTHR36925 1 247 1.8E-66 T 23-04-2016 RPE_RS03560 da9ffcb74d0567d639f62089a0a24416 307 SUPERFAMILY SSF53850 92 297 1.57E-44 T 23-04-2016 RPE_RS03560 da9ffcb74d0567d639f62089a0a24416 307 SUPERFAMILY SSF46785 4 113 1.53E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS03560 da9ffcb74d0567d639f62089a0a24416 307 Pfam PF03466 LysR substrate binding domain 90 295 2.2E-43 T 23-04-2016 IPR005119 LysR, substrate-binding RPE_RS03560 da9ffcb74d0567d639f62089a0a24416 307 Gene3D G3DSA:1.10.10.10 4 84 6.7E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS03560 da9ffcb74d0567d639f62089a0a24416 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 1.15E-5 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS03560 da9ffcb74d0567d639f62089a0a24416 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 1.15E-5 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS03560 da9ffcb74d0567d639f62089a0a24416 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 1.15E-5 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS03560 da9ffcb74d0567d639f62089a0a24416 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 7.3E-18 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS03560 da9ffcb74d0567d639f62089a0a24416 307 PANTHER PTHR30537 1 295 1.4E-142 T 23-04-2016 RPE_RS03560 da9ffcb74d0567d639f62089a0a24416 307 Gene3D G3DSA:3.40.190.10 95 180 1.7E-24 T 23-04-2016 RPE_RS03560 da9ffcb74d0567d639f62089a0a24416 307 PANTHER PTHR30537:SF25 1 295 1.4E-142 T 23-04-2016 RPE_RS03560 da9ffcb74d0567d639f62089a0a24416 307 Gene3D G3DSA:3.40.190.10 181 261 3.7E-7 T 23-04-2016 RPE_RS15565 516da61fcf20d49cd603a6663c24521a 760 PANTHER PTHR30191 1 760 0.0 T 23-04-2016 RPE_RS15565 516da61fcf20d49cd603a6663c24521a 760 Gene3D G3DSA:3.20.70.20 19 758 9.9E-298 T 23-04-2016 RPE_RS15565 516da61fcf20d49cd603a6663c24521a 760 PIRSF PIRSF000379 19 760 0.0 T 23-04-2016 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493|UniPathway: UPA00920 RPE_RS15565 516da61fcf20d49cd603a6663c24521a 760 Pfam PF01228 Glycine radical 635 741 1.7E-42 T 23-04-2016 IPR001150 Glycine radical domain GO:0003824|GO:0008152 RPE_RS15565 516da61fcf20d49cd603a6663c24521a 760 ProSitePatterns PS00850 Glycine radical domain signature. 730 738 - T 23-04-2016 IPR019777 Formate C-acetyltransferase glycine radical, conserved site RPE_RS15565 516da61fcf20d49cd603a6663c24521a 760 SUPERFAMILY SSF51998 18 759 2.38E-280 T 23-04-2016 RPE_RS15565 516da61fcf20d49cd603a6663c24521a 760 TIGRFAM TIGR01255 pyr_form_ly_1: formate acetyltransferase 22 757 0.0 T 23-04-2016 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493|UniPathway: UPA00920 RPE_RS15565 516da61fcf20d49cd603a6663c24521a 760 PANTHER PTHR30191:SF0 1 760 0.0 T 23-04-2016 RPE_RS15565 516da61fcf20d49cd603a6663c24521a 760 Pfam PF02901 Pyruvate formate lyase-like 33 619 4.4E-199 T 23-04-2016 IPR004184 Pyruvate formate lyase domain GO:0003824 RPE_RS19625 426fdb9ad2886d84d981fdd453e0ce82 293 PRINTS PR00996 Glutamate methyltransferase family signature 138 154 1.5E-41 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS19625 426fdb9ad2886d84d981fdd453e0ce82 293 PRINTS PR00996 Glutamate methyltransferase family signature 206 220 1.5E-41 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS19625 426fdb9ad2886d84d981fdd453e0ce82 293 PRINTS PR00996 Glutamate methyltransferase family signature 225 248 1.5E-41 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS19625 426fdb9ad2886d84d981fdd453e0ce82 293 PRINTS PR00996 Glutamate methyltransferase family signature 63 75 1.5E-41 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS19625 426fdb9ad2886d84d981fdd453e0ce82 293 PRINTS PR00996 Glutamate methyltransferase family signature 103 123 1.5E-41 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS19625 426fdb9ad2886d84d981fdd453e0ce82 293 PRINTS PR00996 Glutamate methyltransferase family signature 25 38 1.5E-41 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS19625 426fdb9ad2886d84d981fdd453e0ce82 293 SUPERFAMILY SSF53335 70 262 3.3E-47 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS19625 426fdb9ad2886d84d981fdd453e0ce82 293 PANTHER PTHR24422:SF9 1 278 1.3E-111 T 23-04-2016 RPE_RS19625 426fdb9ad2886d84d981fdd453e0ce82 293 Pfam PF01739 CheR methyltransferase, SAM binding domain 70 262 5.8E-61 T 23-04-2016 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal RPE_RS19625 426fdb9ad2886d84d981fdd453e0ce82 293 Pfam PF03705 CheR methyltransferase, all-alpha domain 5 54 2.4E-9 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RPE_RS19625 426fdb9ad2886d84d981fdd453e0ce82 293 Gene3D G3DSA:3.40.50.150 69 264 6.7E-63 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS19625 426fdb9ad2886d84d981fdd453e0ce82 293 SUPERFAMILY SSF47757 1 69 6.93E-12 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RPE_RS19625 426fdb9ad2886d84d981fdd453e0ce82 293 SMART SM00138 3 266 1.6E-91 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS19625 426fdb9ad2886d84d981fdd453e0ce82 293 PANTHER PTHR24422 1 278 1.3E-111 T 23-04-2016 RPE_RS19625 426fdb9ad2886d84d981fdd453e0ce82 293 Gene3D G3DSA:1.10.155.10 2 68 2.0E-7 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RPE_RS11085 b6aa782340637bc6507e42cfbc935cb1 194 PANTHER PTHR35011:SF1 3 158 4.6E-21 T 23-04-2016 RPE_RS11085 b6aa782340637bc6507e42cfbc935cb1 194 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 22 161 4.0E-25 T 23-04-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component RPE_RS11085 b6aa782340637bc6507e42cfbc935cb1 194 PANTHER PTHR35011 3 158 4.6E-21 T 23-04-2016 RPE_RS11540 7b815bba55ae9b46a50c1068faabf418 172 PANTHER PTHR39563 12 170 1.2E-60 T 23-04-2016 RPE_RS11540 7b815bba55ae9b46a50c1068faabf418 172 Hamap MF_01903 Xanthine phosphoribosyltransferase [gpt]. 11 171 41.414 T 23-04-2016 IPR023747 Xanthine-guanine phosphoribosyltransferase GO:0000310 KEGG: 00230+2.4.2.22|UniPathway: UPA00602 RPE_RS11540 7b815bba55ae9b46a50c1068faabf418 172 SUPERFAMILY SSF53271 14 159 1.75E-30 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RPE_RS11540 7b815bba55ae9b46a50c1068faabf418 172 Gene3D G3DSA:3.40.50.2020 17 165 3.9E-43 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RPE_RS11540 7b815bba55ae9b46a50c1068faabf418 172 Pfam PF00156 Phosphoribosyl transferase domain 19 163 8.3E-15 T 23-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 RPE_RS23095 2dca1b3431ce2f16537843a43e59f37e 134 PIRSF PIRSF028777 4 134 3.6E-44 T 23-04-2016 IPR031308 Uncharacterised conserved protein UCP028777 RPE_RS23095 2dca1b3431ce2f16537843a43e59f37e 134 PANTHER PTHR31503:SF17 1 134 1.4E-41 T 23-04-2016 RPE_RS23095 2dca1b3431ce2f16537843a43e59f37e 134 Pfam PF03733 Inner membrane component domain 79 129 5.3E-19 T 23-04-2016 IPR005185 Inner membrane component domain RPE_RS23095 2dca1b3431ce2f16537843a43e59f37e 134 Pfam PF03733 Inner membrane component domain 7 57 9.6E-17 T 23-04-2016 IPR005185 Inner membrane component domain RPE_RS23095 2dca1b3431ce2f16537843a43e59f37e 134 PANTHER PTHR31503 1 134 1.4E-41 T 23-04-2016 RPE_RS06530 0dda80e7ea884f50e2b43ef4d88e23bd 482 Gene3D G3DSA:1.20.1250.20 35 228 4.4E-8 T 23-04-2016 RPE_RS06530 0dda80e7ea884f50e2b43ef4d88e23bd 482 Gene3D G3DSA:1.20.1250.20 276 459 5.2E-9 T 23-04-2016 RPE_RS06530 0dda80e7ea884f50e2b43ef4d88e23bd 482 SUPERFAMILY SSF103473 35 461 2.09E-25 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS06530 0dda80e7ea884f50e2b43ef4d88e23bd 482 Pfam PF03209 PUCC protein 55 458 3.8E-148 T 23-04-2016 IPR004896 PucC-related RPE_RS06530 0dda80e7ea884f50e2b43ef4d88e23bd 482 PIRSF PIRSF016565 17 465 2.6E-122 T 23-04-2016 IPR026036 PucC protein RPE_RS06530 0dda80e7ea884f50e2b43ef4d88e23bd 482 PANTHER PTHR23538 12 478 6.2E-66 T 23-04-2016 RPE_RS20980 addba8eee2f131931d52d32772abf777 694 PANTHER PTHR32089:SF56 412 691 1.8E-148 T 23-04-2016 RPE_RS20980 addba8eee2f131931d52d32772abf777 694 PANTHER PTHR32089:SF56 302 380 1.8E-148 T 23-04-2016 RPE_RS20980 addba8eee2f131931d52d32772abf777 694 SMART SM00304 345 398 3.1E-7 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS20980 addba8eee2f131931d52d32772abf777 694 SMART SM00283 434 688 4.9E-41 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS20980 addba8eee2f131931d52d32772abf777 694 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 513 687 8.3E-34 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS20980 addba8eee2f131931d52d32772abf777 694 Pfam PF00672 HAMP domain 326 392 1.5E-9 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS20980 addba8eee2f131931d52d32772abf777 694 SUPERFAMILY SSF58104 373 400 4.97E-59 T 23-04-2016 RPE_RS20980 addba8eee2f131931d52d32772abf777 694 SUPERFAMILY SSF58104 440 687 4.97E-59 T 23-04-2016 RPE_RS20980 addba8eee2f131931d52d32772abf777 694 Gene3D G3DSA:1.10.287.950 450 659 6.2E-45 T 23-04-2016 RPE_RS20980 addba8eee2f131931d52d32772abf777 694 PANTHER PTHR32089 412 691 1.8E-148 T 23-04-2016 RPE_RS20980 addba8eee2f131931d52d32772abf777 694 PANTHER PTHR32089 302 380 1.8E-148 T 23-04-2016 RPE_RS17865 f36fe141bd70052fa22bcc92c572f8b2 443 PIRSF PIRSF004557 2 441 7.9E-122 T 23-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 RPE_RS17865 f36fe141bd70052fa22bcc92c572f8b2 443 PANTHER PTHR10906:SF2 19 442 1.2E-207 T 23-04-2016 RPE_RS17865 f36fe141bd70052fa22bcc92c572f8b2 443 PANTHER PTHR10906 19 442 1.2E-207 T 23-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 RPE_RS17865 f36fe141bd70052fa22bcc92c572f8b2 443 ProSitePatterns PS00756 Protein secY signature 2. 174 191 - T 23-04-2016 IPR030659 SecY conserved site RPE_RS17865 f36fe141bd70052fa22bcc92c572f8b2 443 Pfam PF00344 SecY translocase 81 417 1.3E-115 T 23-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 RPE_RS17865 f36fe141bd70052fa22bcc92c572f8b2 443 Gene3D G3DSA:1.10.3370.10 19 437 3.1E-162 T 23-04-2016 IPR023201 SecY subunit domain RPE_RS17865 f36fe141bd70052fa22bcc92c572f8b2 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 27 45 4.3E-99 T 23-04-2016 RPE_RS17865 f36fe141bd70052fa22bcc92c572f8b2 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 79 99 4.3E-99 T 23-04-2016 RPE_RS17865 f36fe141bd70052fa22bcc92c572f8b2 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 155 180 4.3E-99 T 23-04-2016 RPE_RS17865 f36fe141bd70052fa22bcc92c572f8b2 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 402 420 4.3E-99 T 23-04-2016 RPE_RS17865 f36fe141bd70052fa22bcc92c572f8b2 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 120 143 4.3E-99 T 23-04-2016 RPE_RS17865 f36fe141bd70052fa22bcc92c572f8b2 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 315 337 4.3E-99 T 23-04-2016 RPE_RS17865 f36fe141bd70052fa22bcc92c572f8b2 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 181 204 4.3E-99 T 23-04-2016 RPE_RS17865 f36fe141bd70052fa22bcc92c572f8b2 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 273 292 4.3E-99 T 23-04-2016 RPE_RS17865 f36fe141bd70052fa22bcc92c572f8b2 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 370 388 4.3E-99 T 23-04-2016 RPE_RS17865 f36fe141bd70052fa22bcc92c572f8b2 443 SUPERFAMILY SSF103491 18 424 7.85E-129 T 23-04-2016 IPR023201 SecY subunit domain RPE_RS17865 f36fe141bd70052fa22bcc92c572f8b2 443 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 24 429 4.8E-129 T 23-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 RPE_RS17865 f36fe141bd70052fa22bcc92c572f8b2 443 Hamap MF_01465 Protein translocase subunit SecY [secY]. 14 433 29.48 T 23-04-2016 IPR026593 Protein translocase subunit SecY RPE_RS00015 2e5fb4e885b8cab399656de3655814d7 379 ProSitePatterns PS00617 RecF protein signature 1. 127 147 - T 23-04-2016 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 RPE_RS00015 2e5fb4e885b8cab399656de3655814d7 379 PANTHER PTHR32182:SF0 1 360 1.4E-43 T 23-04-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 RPE_RS00015 2e5fb4e885b8cab399656de3655814d7 379 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 6 359 4.7E-51 T 23-04-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 RPE_RS00015 2e5fb4e885b8cab399656de3655814d7 379 Gene3D G3DSA:3.40.50.300 246 358 2.1E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS00015 2e5fb4e885b8cab399656de3655814d7 379 Gene3D G3DSA:3.40.50.300 5 177 2.1E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS00015 2e5fb4e885b8cab399656de3655814d7 379 ProSitePatterns PS00618 RecF protein signature 2. 319 337 - T 23-04-2016 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 RPE_RS00015 2e5fb4e885b8cab399656de3655814d7 379 SUPERFAMILY SSF52540 5 375 3.3E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS00015 2e5fb4e885b8cab399656de3655814d7 379 Pfam PF02463 RecF/RecN/SMC N terminal domain 6 350 1.5E-15 T 23-04-2016 IPR003395 RecF/RecN/SMC, N-terminal RPE_RS00015 2e5fb4e885b8cab399656de3655814d7 379 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 379 89.969 T 23-04-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 RPE_RS00015 2e5fb4e885b8cab399656de3655814d7 379 PANTHER PTHR32182 1 360 1.4E-43 T 23-04-2016 RPE_RS17745 77716cb40085850ced6ae181a26e130c 272 SUPERFAMILY SSF56601 62 253 2.41E-32 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS17745 77716cb40085850ced6ae181a26e130c 272 Gene3D G3DSA:3.40.710.10 35 272 1.6E-73 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS17745 77716cb40085850ced6ae181a26e130c 272 PANTHER PTHR30627:SF6 40 217 1.8E-36 T 23-04-2016 RPE_RS17745 77716cb40085850ced6ae181a26e130c 272 ProSitePatterns PS00337 Beta-lactamase class-D active site. 73 83 - T 23-04-2016 IPR002137 Beta-lactamase, class-D active site GO:0008800|GO:0017001 KEGG: 00311+3.5.2.6 RPE_RS17745 77716cb40085850ced6ae181a26e130c 272 PANTHER PTHR30627 40 217 1.8E-36 T 23-04-2016 RPE_RS17745 77716cb40085850ced6ae181a26e130c 272 Pfam PF00905 Penicillin binding protein transpeptidase domain 69 251 9.4E-25 T 23-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RPE_RS11950 4e95e30d8081d3733859e9ebc66ef098 227 SUPERFAMILY SSF46689 1 76 3.59E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS11950 4e95e30d8081d3733859e9ebc66ef098 227 SUPERFAMILY SSF48498 81 186 1.59E-27 T 23-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RPE_RS11950 4e95e30d8081d3733859e9ebc66ef098 227 PANTHER PTHR30328 1 188 1.7E-54 T 23-04-2016 RPE_RS11950 4e95e30d8081d3733859e9ebc66ef098 227 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 61 1.1E-8 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS11950 4e95e30d8081d3733859e9ebc66ef098 227 PANTHER PTHR30328:SF18 1 188 1.7E-54 T 23-04-2016 RPE_RS11950 4e95e30d8081d3733859e9ebc66ef098 227 Gene3D G3DSA:1.10.357.10 52 187 1.5E-41 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RPE_RS11950 4e95e30d8081d3733859e9ebc66ef098 227 Gene3D G3DSA:1.10.10.60 5 51 1.6E-14 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS16890 014516bb517ee7b7ab4c33800b3a91dd 227 PANTHER PTHR24567:SF37 1 201 2.2E-51 T 23-04-2016 RPE_RS16890 014516bb517ee7b7ab4c33800b3a91dd 227 SMART SM00100 1 122 1.3E-12 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RPE_RS16890 014516bb517ee7b7ab4c33800b3a91dd 227 SUPERFAMILY SSF51206 12 138 4.45E-30 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like RPE_RS16890 014516bb517ee7b7ab4c33800b3a91dd 227 PANTHER PTHR24567 1 201 2.2E-51 T 23-04-2016 RPE_RS16890 014516bb517ee7b7ab4c33800b3a91dd 227 Pfam PF00027 Cyclic nucleotide-binding domain 24 109 5.4E-19 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RPE_RS16890 014516bb517ee7b7ab4c33800b3a91dd 227 Pfam PF13545 Crp-like helix-turn-helix domain 143 206 1.9E-11 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RPE_RS16890 014516bb517ee7b7ab4c33800b3a91dd 227 SUPERFAMILY SSF46785 141 203 4.24E-10 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS16890 014516bb517ee7b7ab4c33800b3a91dd 227 Gene3D G3DSA:1.10.10.10 141 206 8.2E-13 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS16890 014516bb517ee7b7ab4c33800b3a91dd 227 Gene3D G3DSA:2.60.120.10 19 133 1.6E-24 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS10940 d1314385012192699bbe567d9c20bf57 499 Gene3D G3DSA:2.30.42.10 287 382 1.0E-28 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS10940 d1314385012192699bbe567d9c20bf57 499 SUPERFAMILY SSF50156 404 488 9.99E-12 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS10940 d1314385012192699bbe567d9c20bf57 499 SUPERFAMILY SSF50494 25 62 7.52E-63 T 23-04-2016 IPR009003 Peptidase S1, PA clan RPE_RS10940 d1314385012192699bbe567d9c20bf57 499 SUPERFAMILY SSF50494 108 294 7.52E-63 T 23-04-2016 IPR009003 Peptidase S1, PA clan RPE_RS10940 d1314385012192699bbe567d9c20bf57 499 Gene3D G3DSA:2.30.42.10 404 487 6.2E-15 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS10940 d1314385012192699bbe567d9c20bf57 499 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 44 492 7.8E-147 T 23-04-2016 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 RPE_RS10940 d1314385012192699bbe567d9c20bf57 499 PANTHER PTHR22939 102 380 2.7E-111 T 23-04-2016 RPE_RS10940 d1314385012192699bbe567d9c20bf57 499 PANTHER PTHR22939 1 85 2.7E-111 T 23-04-2016 RPE_RS10940 d1314385012192699bbe567d9c20bf57 499 SUPERFAMILY SSF50156 284 379 8.41E-21 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS10940 d1314385012192699bbe567d9c20bf57 499 PRINTS PR00834 HtrA/DegQ protease family signature 325 337 2.4E-54 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RPE_RS10940 d1314385012192699bbe567d9c20bf57 499 PRINTS PR00834 HtrA/DegQ protease family signature 239 256 2.4E-54 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RPE_RS10940 d1314385012192699bbe567d9c20bf57 499 PRINTS PR00834 HtrA/DegQ protease family signature 120 132 2.4E-54 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RPE_RS10940 d1314385012192699bbe567d9c20bf57 499 PRINTS PR00834 HtrA/DegQ protease family signature 141 161 2.4E-54 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RPE_RS10940 d1314385012192699bbe567d9c20bf57 499 PRINTS PR00834 HtrA/DegQ protease family signature 217 234 2.4E-54 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RPE_RS10940 d1314385012192699bbe567d9c20bf57 499 PRINTS PR00834 HtrA/DegQ protease family signature 183 207 2.4E-54 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RPE_RS10940 d1314385012192699bbe567d9c20bf57 499 Pfam PF13365 Trypsin-like peptidase domain 111 246 3.3E-33 T 23-04-2016 RPE_RS10940 d1314385012192699bbe567d9c20bf57 499 Gene3D G3DSA:2.40.10.10 43 171 3.1E-33 T 23-04-2016 RPE_RS10940 d1314385012192699bbe567d9c20bf57 499 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 397 483 1.9E-7 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS10940 d1314385012192699bbe567d9c20bf57 499 Gene3D G3DSA:2.40.10.10 174 286 1.7E-45 T 23-04-2016 RPE_RS10940 d1314385012192699bbe567d9c20bf57 499 SMART SM00228 403 488 5.7E-5 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS10940 d1314385012192699bbe567d9c20bf57 499 SMART SM00228 285 367 4.0E-9 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS10940 d1314385012192699bbe567d9c20bf57 499 Pfam PF13180 PDZ domain 285 376 3.6E-17 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS05350 471ea17015de2a49e7052700c5580a04 269 PIRSF PIRSF029730 12 264 1.3E-88 T 23-04-2016 IPR011227 Uncharacterised conserved protein UCP029730 RPE_RS05350 471ea17015de2a49e7052700c5580a04 269 Pfam PF05013 N-formylglutamate amidohydrolase 29 235 1.7E-42 T 23-04-2016 IPR007709 N-formylglutamate amidohydrolase RPE_RS05350 471ea17015de2a49e7052700c5580a04 269 SUPERFAMILY SSF53187 16 259 5.02E-73 T 23-04-2016 RPE_RS05350 471ea17015de2a49e7052700c5580a04 269 Gene3D G3DSA:3.40.630.40 22 257 1.7E-79 T 23-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 RPE_RS16850 52421b5772648e2ffdf43f3ade6a9a3d 359 Pfam PF03060 Nitronate monooxygenase 6 341 1.1E-73 T 23-04-2016 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 RPE_RS16850 52421b5772648e2ffdf43f3ade6a9a3d 359 PANTHER PTHR32332 111 356 9.9E-126 T 23-04-2016 RPE_RS16850 52421b5772648e2ffdf43f3ade6a9a3d 359 PANTHER PTHR32332 2 82 9.9E-126 T 23-04-2016 RPE_RS16850 52421b5772648e2ffdf43f3ade6a9a3d 359 SUPERFAMILY SSF51412 6 331 1.68E-63 T 23-04-2016 RPE_RS16850 52421b5772648e2ffdf43f3ade6a9a3d 359 PANTHER PTHR32332:SF12 111 356 9.9E-126 T 23-04-2016 RPE_RS16850 52421b5772648e2ffdf43f3ade6a9a3d 359 PANTHER PTHR32332:SF12 2 82 9.9E-126 T 23-04-2016 RPE_RS16850 52421b5772648e2ffdf43f3ade6a9a3d 359 Gene3D G3DSA:3.20.20.70 5 339 6.2E-65 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS06120 50230acab7b20446e354c23ac2617323 125 SUPERFAMILY SSF53146 1 110 3.4E-24 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis RPE_RS06120 50230acab7b20446e354c23ac2617323 125 Gene3D G3DSA:3.30.420.130 1 105 1.0E-17 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis RPE_RS06120 50230acab7b20446e354c23ac2617323 125 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 12 101 9.8E-8 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis RPE_RS13675 02db243c6f0b056236d79d89b90ccd28 281 Pfam PF01569 PAP2 superfamily 132 247 4.6E-21 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RPE_RS13675 02db243c6f0b056236d79d89b90ccd28 281 SUPERFAMILY SSF48317 38 250 1.7E-32 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RPE_RS13675 02db243c6f0b056236d79d89b90ccd28 281 PANTHER PTHR14969 123 256 3.6E-15 T 23-04-2016 RPE_RS13675 02db243c6f0b056236d79d89b90ccd28 281 PANTHER PTHR14969 94 107 3.6E-15 T 23-04-2016 RPE_RS13675 02db243c6f0b056236d79d89b90ccd28 281 SMART SM00014 128 242 1.2E-10 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RPE_RS13675 02db243c6f0b056236d79d89b90ccd28 281 Gene3D G3DSA:1.20.144.10 95 247 2.6E-24 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RPE_RS14755 ddf26dd96e03cf3645f31ae48065855a 332 PIRSF PIRSF004532 13 332 2.7E-140 T 23-04-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 RPE_RS14755 ddf26dd96e03cf3645f31ae48065855a 332 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 16 323 5.9E-134 T 23-04-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 RPE_RS14755 ddf26dd96e03cf3645f31ae48065855a 332 Gene3D G3DSA:3.30.540.10 186 324 1.6E-36 T 23-04-2016 RPE_RS14755 ddf26dd96e03cf3645f31ae48065855a 332 Gene3D G3DSA:3.30.540.10 13 185 1.2E-60 T 23-04-2016 RPE_RS14755 ddf26dd96e03cf3645f31ae48065855a 332 SUPERFAMILY SSF56655 13 324 2.99E-101 T 23-04-2016 RPE_RS14755 ddf26dd96e03cf3645f31ae48065855a 332 PANTHER PTHR30447:SF0 6 331 4.1E-164 T 23-04-2016 RPE_RS14755 ddf26dd96e03cf3645f31ae48065855a 332 PANTHER PTHR30447 6 331 4.1E-164 T 23-04-2016 RPE_RS14755 ddf26dd96e03cf3645f31ae48065855a 332 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 14 324 9.2E-101 T 23-04-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 RPE_RS13905 f467c2264bc296dd94d6f1f56112f67b 156 SUPERFAMILY SSF50891 8 150 9.5E-49 T 23-04-2016 IPR029000 Cyclophilin-like domain RPE_RS13905 f467c2264bc296dd94d6f1f56112f67b 156 PANTHER PTHR11071 9 143 3.2E-46 T 23-04-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 RPE_RS13905 f467c2264bc296dd94d6f1f56112f67b 156 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 9 148 2.3E-44 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RPE_RS13905 f467c2264bc296dd94d6f1f56112f67b 156 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 47 59 1.3E-8 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RPE_RS13905 f467c2264bc296dd94d6f1f56112f67b 156 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 114 129 1.3E-8 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RPE_RS13905 f467c2264bc296dd94d6f1f56112f67b 156 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 101 113 1.3E-8 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RPE_RS13905 f467c2264bc296dd94d6f1f56112f67b 156 PIRSF PIRSF001467 1 156 1.3E-30 T 23-04-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 RPE_RS13905 f467c2264bc296dd94d6f1f56112f67b 156 Gene3D G3DSA:2.40.100.10 3 144 1.4E-45 T 23-04-2016 IPR029000 Cyclophilin-like domain RPE_RS07275 4a33878926a00ff527ce0fa8dad1bee8 233 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 29 229 1.6E-51 T 23-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RPE_RS07275 4a33878926a00ff527ce0fa8dad1bee8 233 Gene3D G3DSA:3.90.850.10 23 230 4.4E-77 T 23-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RPE_RS07275 4a33878926a00ff527ce0fa8dad1bee8 233 SUPERFAMILY SSF56529 23 229 4.45E-71 T 23-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RPE_RS07275 4a33878926a00ff527ce0fa8dad1bee8 233 PANTHER PTHR11820:SF7 27 229 2.6E-83 T 23-04-2016 RPE_RS07275 4a33878926a00ff527ce0fa8dad1bee8 233 PANTHER PTHR11820 27 229 2.6E-83 T 23-04-2016 RPE_RS23910 1774ba924a4e0c4247ef2f7988bd2b2d 223 SUPERFAMILY SSF46894 142 211 1.94E-20 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RPE_RS23910 1774ba924a4e0c4247ef2f7988bd2b2d 223 SUPERFAMILY SSF52172 3 132 1.57E-26 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS23910 1774ba924a4e0c4247ef2f7988bd2b2d 223 Pfam PF00196 Bacterial regulatory proteins, luxR family 154 208 4.3E-19 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS23910 1774ba924a4e0c4247ef2f7988bd2b2d 223 SMART SM00421 152 209 8.1E-23 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS23910 1774ba924a4e0c4247ef2f7988bd2b2d 223 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 185 197 9.7E-12 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS23910 1774ba924a4e0c4247ef2f7988bd2b2d 223 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 169 9.7E-12 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS23910 1774ba924a4e0c4247ef2f7988bd2b2d 223 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 185 9.7E-12 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS23910 1774ba924a4e0c4247ef2f7988bd2b2d 223 PANTHER PTHR26402:SF474 7 218 7.3E-97 T 23-04-2016 RPE_RS23910 1774ba924a4e0c4247ef2f7988bd2b2d 223 Gene3D G3DSA:3.40.50.2300 6 132 5.7E-29 T 23-04-2016 RPE_RS23910 1774ba924a4e0c4247ef2f7988bd2b2d 223 PANTHER PTHR26402 7 218 7.3E-97 T 23-04-2016 RPE_RS23910 1774ba924a4e0c4247ef2f7988bd2b2d 223 Pfam PF00072 Response regulator receiver domain 10 122 3.2E-21 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS23910 1774ba924a4e0c4247ef2f7988bd2b2d 223 Gene3D G3DSA:1.10.10.10 143 211 1.8E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS23910 1774ba924a4e0c4247ef2f7988bd2b2d 223 SMART SM00448 7 121 3.8E-20 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS23910 1774ba924a4e0c4247ef2f7988bd2b2d 223 ProSitePatterns PS00622 LuxR-type HTH domain signature. 169 196 - T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS15050 05aaf7661e78638269f2656c90cfd52b 315 SUPERFAMILY SSF53474 22 312 7.8E-78 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS15050 05aaf7661e78638269f2656c90cfd52b 315 Gene3D G3DSA:3.40.50.1820 4 313 1.3E-105 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS15050 05aaf7661e78638269f2656c90cfd52b 315 Pfam PF07859 alpha/beta hydrolase fold 85 291 5.3E-77 T 23-04-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 RPE_RS15050 05aaf7661e78638269f2656c90cfd52b 315 ProSitePatterns PS01173 Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 85 101 - T 23-04-2016 IPR002168 Lipase, GDXG, putative histidine active site GO:0008152|GO:0016787 RPE_RS15050 05aaf7661e78638269f2656c90cfd52b 315 PANTHER PTHR23024 60 312 8.5E-94 T 23-04-2016 RPE_RS15050 05aaf7661e78638269f2656c90cfd52b 315 PANTHER PTHR23024:SF24 60 312 8.5E-94 T 23-04-2016 RPE_RS15015 8eeb7e79eb1285527b0bd48479fffe87 509 SUPERFAMILY SSF55874 346 498 7.33E-38 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS15015 8eeb7e79eb1285527b0bd48479fffe87 509 SMART SM00388 246 348 7.1E-5 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS15015 8eeb7e79eb1285527b0bd48479fffe87 509 Pfam PF05227 CHASE3 domain 42 176 7.8E-30 T 23-04-2016 IPR007891 CHASE3 RPE_RS15015 8eeb7e79eb1285527b0bd48479fffe87 509 SMART SM00387 389 500 2.0E-27 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS15015 8eeb7e79eb1285527b0bd48479fffe87 509 Gene3D G3DSA:3.30.565.10 349 500 4.5E-38 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS15015 8eeb7e79eb1285527b0bd48479fffe87 509 Gene3D G3DSA:1.10.287.130 239 272 8.5E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS15015 8eeb7e79eb1285527b0bd48479fffe87 509 Gene3D G3DSA:1.10.287.130 315 344 8.5E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS15015 8eeb7e79eb1285527b0bd48479fffe87 509 PANTHER PTHR24423:SF439 312 497 1.5E-55 T 23-04-2016 RPE_RS15015 8eeb7e79eb1285527b0bd48479fffe87 509 PANTHER PTHR24423:SF439 214 274 1.5E-55 T 23-04-2016 RPE_RS15015 8eeb7e79eb1285527b0bd48479fffe87 509 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 390 498 3.4E-22 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS15015 8eeb7e79eb1285527b0bd48479fffe87 509 PANTHER PTHR24423 312 497 1.5E-55 T 23-04-2016 RPE_RS15015 8eeb7e79eb1285527b0bd48479fffe87 509 PANTHER PTHR24423 214 274 1.5E-55 T 23-04-2016 RPE_RS15015 8eeb7e79eb1285527b0bd48479fffe87 509 SUPERFAMILY SSF47384 231 275 1.1E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS15015 8eeb7e79eb1285527b0bd48479fffe87 509 Pfam PF00512 His Kinase A (phospho-acceptor) domain 248 346 2.3E-6 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS15015 8eeb7e79eb1285527b0bd48479fffe87 509 PRINTS PR00344 Bacterial sensor protein C-terminal signature 428 442 1.4E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS15015 8eeb7e79eb1285527b0bd48479fffe87 509 PRINTS PR00344 Bacterial sensor protein C-terminal signature 446 456 1.4E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS15015 8eeb7e79eb1285527b0bd48479fffe87 509 PRINTS PR00344 Bacterial sensor protein C-terminal signature 484 497 1.4E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS15015 8eeb7e79eb1285527b0bd48479fffe87 509 PRINTS PR00344 Bacterial sensor protein C-terminal signature 460 478 1.4E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS23950 57e485742db4116beebe37a6ca4e1c88 316 SUPERFAMILY SSF53807 23 314 9.81E-92 T 23-04-2016 RPE_RS23950 57e485742db4116beebe37a6ca4e1c88 316 Pfam PF01297 Zinc-uptake complex component A periplasmic 29 311 3.6E-87 T 23-04-2016 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 RPE_RS23950 57e485742db4116beebe37a6ca4e1c88 316 PANTHER PTHR30477 1 115 3.6E-94 T 23-04-2016 RPE_RS23950 57e485742db4116beebe37a6ca4e1c88 316 PANTHER PTHR30477 131 314 3.6E-94 T 23-04-2016 RPE_RS23950 57e485742db4116beebe37a6ca4e1c88 316 Gene3D G3DSA:3.40.50.1980 194 314 1.1E-44 T 23-04-2016 RPE_RS23950 57e485742db4116beebe37a6ca4e1c88 316 PRINTS PR00691 Adhesin B signature 250 267 1.1E-21 T 23-04-2016 IPR006129 Adhesin B GO:0007155 RPE_RS23950 57e485742db4116beebe37a6ca4e1c88 316 PRINTS PR00691 Adhesin B signature 51 69 1.1E-21 T 23-04-2016 IPR006129 Adhesin B GO:0007155 RPE_RS23950 57e485742db4116beebe37a6ca4e1c88 316 PRINTS PR00691 Adhesin B signature 70 89 1.1E-21 T 23-04-2016 IPR006129 Adhesin B GO:0007155 RPE_RS23950 57e485742db4116beebe37a6ca4e1c88 316 PRINTS PR00691 Adhesin B signature 293 311 1.1E-21 T 23-04-2016 IPR006129 Adhesin B GO:0007155 RPE_RS23950 57e485742db4116beebe37a6ca4e1c88 316 PRINTS PR00691 Adhesin B signature 272 290 1.1E-21 T 23-04-2016 IPR006129 Adhesin B GO:0007155 RPE_RS23950 57e485742db4116beebe37a6ca4e1c88 316 PRINTS PR00691 Adhesin B signature 26 47 1.1E-21 T 23-04-2016 IPR006129 Adhesin B GO:0007155 RPE_RS23950 57e485742db4116beebe37a6ca4e1c88 316 PANTHER PTHR30477:SF16 1 115 3.6E-94 T 23-04-2016 RPE_RS23950 57e485742db4116beebe37a6ca4e1c88 316 PANTHER PTHR30477:SF16 131 314 3.6E-94 T 23-04-2016 RPE_RS23950 57e485742db4116beebe37a6ca4e1c88 316 PRINTS PR00690 Adhesin family signature 70 87 9.1E-24 T 23-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RPE_RS23950 57e485742db4116beebe37a6ca4e1c88 316 PRINTS PR00690 Adhesin family signature 280 299 9.1E-24 T 23-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RPE_RS23950 57e485742db4116beebe37a6ca4e1c88 316 PRINTS PR00690 Adhesin family signature 26 44 9.1E-24 T 23-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RPE_RS23950 57e485742db4116beebe37a6ca4e1c88 316 PRINTS PR00690 Adhesin family signature 57 70 9.1E-24 T 23-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RPE_RS23950 57e485742db4116beebe37a6ca4e1c88 316 PRINTS PR00690 Adhesin family signature 254 272 9.1E-24 T 23-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RPE_RS23950 57e485742db4116beebe37a6ca4e1c88 316 Gene3D G3DSA:3.40.50.1980 27 193 5.0E-56 T 23-04-2016 RPE_RS15160 a83bfe9a2a0eefa1aae0ceda352294cd 258 Pfam PF11967 Recombination protein O N terminal 1 68 5.4E-19 T 23-04-2016 IPR022572 DNA replication/recombination mediator RecO, N-terminal RPE_RS15160 a83bfe9a2a0eefa1aae0ceda352294cd 258 Hamap MF_00201 DNA repair protein RecO [recO]. 1 238 18.312 T 23-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 RPE_RS15160 a83bfe9a2a0eefa1aae0ceda352294cd 258 SUPERFAMILY SSF50249 1 67 1.32E-9 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS15160 a83bfe9a2a0eefa1aae0ceda352294cd 258 TIGRFAM TIGR00613 reco: DNA repair protein RecO 3 236 7.7E-40 T 23-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 RPE_RS15160 a83bfe9a2a0eefa1aae0ceda352294cd 258 SUPERFAMILY SSF57863 87 182 8.11E-11 T 23-04-2016 RPE_RS15160 a83bfe9a2a0eefa1aae0ceda352294cd 258 ProDom PD202328 DNA REPAIR RECOMBINATION RECO DAMAGE O O RECO-RELATED RECOMBINATIONAL RP549 132 239 3.0E-56 T 23-04-2016 RPE_RS15160 a83bfe9a2a0eefa1aae0ceda352294cd 258 Pfam PF02565 Recombination protein O C terminal 87 221 7.1E-24 T 23-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 RPE_RS15160 a83bfe9a2a0eefa1aae0ceda352294cd 258 PANTHER PTHR33991 1 247 6.1E-42 T 23-04-2016 RPE_RS15160 a83bfe9a2a0eefa1aae0ceda352294cd 258 Gene3D G3DSA:2.40.50.140 3 50 2.7E-5 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS15335 63efe862afe75f76b4b1fc185088d958 249 SMART SM00382 45 229 1.6E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS15335 63efe862afe75f76b4b1fc185088d958 249 PANTHER PTHR24220 22 249 1.3E-90 T 23-04-2016 RPE_RS15335 63efe862afe75f76b4b1fc185088d958 249 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS15335 63efe862afe75f76b4b1fc185088d958 249 PANTHER PTHR24220:SF568 22 249 1.3E-90 T 23-04-2016 RPE_RS15335 63efe862afe75f76b4b1fc185088d958 249 SUPERFAMILY SSF52540 18 245 9.75E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15335 63efe862afe75f76b4b1fc185088d958 249 Gene3D G3DSA:3.40.50.300 17 246 5.1E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15335 63efe862afe75f76b4b1fc185088d958 249 Pfam PF00005 ABC transporter 36 177 2.8E-27 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS11055 137f55517151700cde97acb3512f6e6b 232 SUPERFAMILY SSF55811 87 188 2.3E-8 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS11055 137f55517151700cde97acb3512f6e6b 232 Gene3D G3DSA:3.90.79.10 94 158 9.5E-5 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS18860 73459958d647192cb96fe972d0f1b869 339 SUPERFAMILY SSF51679 2 329 3.42E-75 T 23-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RPE_RS18860 73459958d647192cb96fe972d0f1b869 339 Pfam PF00296 Luciferase-like monooxygenase 17 299 3.8E-37 T 23-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RPE_RS18860 73459958d647192cb96fe972d0f1b869 339 PANTHER PTHR30137 1 330 7.4E-130 T 23-04-2016 RPE_RS18860 73459958d647192cb96fe972d0f1b869 339 PANTHER PTHR30137:SF2 1 330 7.4E-130 T 23-04-2016 RPE_RS18860 73459958d647192cb96fe972d0f1b869 339 Gene3D G3DSA:3.20.20.30 3 329 3.3E-86 T 23-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RPE_RS18860 73459958d647192cb96fe972d0f1b869 339 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 4 330 4.2E-128 T 23-04-2016 IPR019949 Luciferase family oxidoreductase, group 1 RPE_RS01710 d20dfc8bf054bed9d08f059315bb6394 216 PANTHER PTHR11002 6 216 1.6E-51 T 23-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RPE_RS01710 d20dfc8bf054bed9d08f059315bb6394 216 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 89 109 - T 23-04-2016 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RPE_RS01710 d20dfc8bf054bed9d08f059315bb6394 216 SUPERFAMILY SSF53056 3 210 1.44E-56 T 23-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RPE_RS01710 d20dfc8bf054bed9d08f059315bb6394 216 Pfam PF00484 Carbonic anhydrase 40 196 4.6E-46 T 23-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RPE_RS01710 d20dfc8bf054bed9d08f059315bb6394 216 PANTHER PTHR11002:SF13 6 216 1.6E-51 T 23-04-2016 RPE_RS01710 d20dfc8bf054bed9d08f059315bb6394 216 Gene3D G3DSA:3.40.1050.10 5 210 4.1E-61 T 23-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RPE_RS01710 d20dfc8bf054bed9d08f059315bb6394 216 SMART SM00947 32 201 3.2E-62 T 23-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RPE_RS16870 174c27f4c8d3f4d7f9c0b7375b7f9d50 659 SUPERFAMILY SSF51905 60 308 1.2E-15 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS16870 174c27f4c8d3f4d7f9c0b7375b7f9d50 659 PANTHER PTHR37417 53 590 5.4E-201 T 23-04-2016 RPE_RS16870 174c27f4c8d3f4d7f9c0b7375b7f9d50 659 Gene3D G3DSA:3.50.50.60 248 303 3.9E-9 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS16870 174c27f4c8d3f4d7f9c0b7375b7f9d50 659 Gene3D G3DSA:3.50.50.60 56 102 3.9E-9 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS16870 174c27f4c8d3f4d7f9c0b7375b7f9d50 659 Pfam PF06100 MCRA family 58 557 9.1E-198 T 23-04-2016 IPR010354 Oleate hydratase GO:0006631|GO:0050151|GO:0071949 UniPathway: UPA00199 RPE_RS16870 174c27f4c8d3f4d7f9c0b7375b7f9d50 659 PANTHER PTHR37417:SF1 53 590 5.4E-201 T 23-04-2016 RPE_RS10280 933d7f694e2ef7aa7f4e1aef2db6ba07 279 PANTHER PTHR24220:SF408 3 245 3.3E-95 T 23-04-2016 RPE_RS10280 933d7f694e2ef7aa7f4e1aef2db6ba07 279 SUPERFAMILY SSF52540 2 235 2.79E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10280 933d7f694e2ef7aa7f4e1aef2db6ba07 279 SMART SM00382 27 231 9.4E-15 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS10280 933d7f694e2ef7aa7f4e1aef2db6ba07 279 Gene3D G3DSA:3.40.50.300 1 233 5.8E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10280 933d7f694e2ef7aa7f4e1aef2db6ba07 279 Pfam PF00005 ABC transporter 18 174 1.2E-35 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS10280 933d7f694e2ef7aa7f4e1aef2db6ba07 279 PANTHER PTHR24220 3 245 3.3E-95 T 23-04-2016 RPE_RS10280 933d7f694e2ef7aa7f4e1aef2db6ba07 279 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS10280 933d7f694e2ef7aa7f4e1aef2db6ba07 279 TIGRFAM TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein 1 243 4.6E-97 T 23-04-2016 IPR012693 ABC transporter, phosphonate import, PhnC GO:0005524|GO:0015416|GO:0015716|GO:0016020 RPE_RS01025 1c2ca97e4dfa6da5fca3cff6ddc23718 370 Pfam PF03471 Transporter associated domain 250 331 2.7E-16 T 23-04-2016 IPR005170 Transporter-associated domain RPE_RS01025 1c2ca97e4dfa6da5fca3cff6ddc23718 370 SUPERFAMILY SSF54631 82 247 3.54E-31 T 23-04-2016 RPE_RS01025 1c2ca97e4dfa6da5fca3cff6ddc23718 370 PANTHER PTHR22777 32 152 1.9E-103 T 23-04-2016 RPE_RS01025 1c2ca97e4dfa6da5fca3cff6ddc23718 370 PANTHER PTHR22777 179 368 1.9E-103 T 23-04-2016 RPE_RS01025 1c2ca97e4dfa6da5fca3cff6ddc23718 370 SMART SM01091 249 332 1.4E-20 T 23-04-2016 IPR005170 Transporter-associated domain RPE_RS01025 1c2ca97e4dfa6da5fca3cff6ddc23718 370 Gene3D G3DSA:3.10.580.10 73 240 4.0E-18 T 23-04-2016 RPE_RS01025 1c2ca97e4dfa6da5fca3cff6ddc23718 370 PANTHER PTHR22777:SF17 32 152 1.9E-103 T 23-04-2016 RPE_RS01025 1c2ca97e4dfa6da5fca3cff6ddc23718 370 PANTHER PTHR22777:SF17 179 368 1.9E-103 T 23-04-2016 RPE_RS01025 1c2ca97e4dfa6da5fca3cff6ddc23718 370 Pfam PF00571 CBS domain 89 144 8.6E-8 T 23-04-2016 IPR000644 CBS domain RPE_RS01025 1c2ca97e4dfa6da5fca3cff6ddc23718 370 Pfam PF00571 CBS domain 184 232 6.7E-5 T 23-04-2016 IPR000644 CBS domain RPE_RS01025 1c2ca97e4dfa6da5fca3cff6ddc23718 370 Gene3D G3DSA:3.30.465.10 241 330 2.2E-21 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RPE_RS01025 1c2ca97e4dfa6da5fca3cff6ddc23718 370 SUPERFAMILY SSF56176 247 333 1.55E-16 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RPE_RS01025 1c2ca97e4dfa6da5fca3cff6ddc23718 370 SMART SM00116 185 233 1.7 T 23-04-2016 IPR000644 CBS domain RPE_RS01025 1c2ca97e4dfa6da5fca3cff6ddc23718 370 SMART SM00116 96 145 0.036 T 23-04-2016 IPR000644 CBS domain RPE_RS10645 8fde8c455381cac28b6478f045b9d90e 715 Hamap MF_01588 DNA ligase [ligA]. 16 713 51.48 T 23-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RPE_RS10645 8fde8c455381cac28b6478f045b9d90e 715 Gene3D G3DSA:2.40.50.140 335 418 1.8E-33 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS10645 8fde8c455381cac28b6478f045b9d90e 715 SMART SM00532 18 475 1.7E-250 T 23-04-2016 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 RPE_RS10645 8fde8c455381cac28b6478f045b9d90e 715 SUPERFAMILY SSF47781 431 623 1.89E-51 T 23-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 RPE_RS10645 8fde8c455381cac28b6478f045b9d90e 715 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 19 334 4.0E-121 T 23-04-2016 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 RPE_RS10645 8fde8c455381cac28b6478f045b9d90e 715 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 435 461 8.9E-12 T 23-04-2016 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 RPE_RS10645 8fde8c455381cac28b6478f045b9d90e 715 PIRSF PIRSF001604 11 715 3.4E-235 T 23-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RPE_RS10645 8fde8c455381cac28b6478f045b9d90e 715 SUPERFAMILY SSF56091 15 331 1.35E-114 T 23-04-2016 RPE_RS10645 8fde8c455381cac28b6478f045b9d90e 715 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 337 425 2.9E-33 T 23-04-2016 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 RPE_RS10645 8fde8c455381cac28b6478f045b9d90e 715 Gene3D G3DSA:3.30.470.30 135 267 2.1E-49 T 23-04-2016 RPE_RS10645 8fde8c455381cac28b6478f045b9d90e 715 Gene3D G3DSA:3.40.50.10190 639 714 2.9E-25 T 23-04-2016 IPR001357 BRCT domain RPE_RS10645 8fde8c455381cac28b6478f045b9d90e 715 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 28 709 6.1E-238 T 23-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RPE_RS10645 8fde8c455381cac28b6478f045b9d90e 715 SMART SM00292 639 715 2.1E-11 T 23-04-2016 IPR001357 BRCT domain RPE_RS10645 8fde8c455381cac28b6478f045b9d90e 715 Gene3D G3DSA:1.10.287.610 11 81 2.7E-24 T 23-04-2016 RPE_RS10645 8fde8c455381cac28b6478f045b9d90e 715 Pfam PF12826 Helix-hairpin-helix motif 541 572 1.2E-9 T 23-04-2016 RPE_RS10645 8fde8c455381cac28b6478f045b9d90e 715 PANTHER PTHR23389 22 564 1.4E-180 T 23-04-2016 RPE_RS10645 8fde8c455381cac28b6478f045b9d90e 715 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 644 713 2.1E-13 T 23-04-2016 IPR001357 BRCT domain RPE_RS10645 8fde8c455381cac28b6478f045b9d90e 715 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 131 160 - T 23-04-2016 IPR018239 NAD-dependent DNA ligase, active site RPE_RS10645 8fde8c455381cac28b6478f045b9d90e 715 SUPERFAMILY SSF50249 333 428 1.71E-24 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS10645 8fde8c455381cac28b6478f045b9d90e 715 SUPERFAMILY SSF52113 640 714 3.36E-19 T 23-04-2016 IPR001357 BRCT domain RPE_RS10645 8fde8c455381cac28b6478f045b9d90e 715 PANTHER PTHR23389:SF9 22 564 1.4E-180 T 23-04-2016 RPE_RS10645 8fde8c455381cac28b6478f045b9d90e 715 Gene3D G3DSA:1.10.150.20 462 533 4.9E-23 T 23-04-2016 RPE_RS10645 8fde8c455381cac28b6478f045b9d90e 715 Gene3D G3DSA:1.10.150.20 535 624 2.0E-24 T 23-04-2016 RPE_RS10645 8fde8c455381cac28b6478f045b9d90e 715 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 347 362 - T 23-04-2016 IPR033136 NAD-dependent DNA ligase, conserved site RPE_RS22140 6a7ba687cdf331018db838df15e8f827 366 Gene3D G3DSA:1.10.340.30 41 136 1.7E-42 T 23-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RPE_RS22140 6a7ba687cdf331018db838df15e8f827 366 SUPERFAMILY SSF55811 232 360 7.43E-19 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS22140 6a7ba687cdf331018db838df15e8f827 366 Pfam PF14815 NUDIX domain 247 357 3.6E-21 T 23-04-2016 IPR029119 MutY, C-terminal RPE_RS22140 6a7ba687cdf331018db838df15e8f827 366 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 204 220 - T 23-04-2016 IPR004035 Endonuclease III, iron-sulphur binding site RPE_RS22140 6a7ba687cdf331018db838df15e8f827 366 Pfam PF00633 Helix-hairpin-helix motif 114 142 1.4E-7 T 23-04-2016 IPR000445 Helix-hairpin-helix motif GO:0003677 RPE_RS22140 6a7ba687cdf331018db838df15e8f827 366 SUPERFAMILY SSF48150 19 234 2.83E-70 T 23-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RPE_RS22140 6a7ba687cdf331018db838df15e8f827 366 ProSitePatterns PS01155 Endonuclease III family signature. 116 145 - T 23-04-2016 IPR004036 Endonuclease III-like, conserved site-2 Reactome: REACT_216 RPE_RS22140 6a7ba687cdf331018db838df15e8f827 366 Gene3D G3DSA:3.90.79.10 245 359 2.7E-17 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS22140 6a7ba687cdf331018db838df15e8f827 366 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 50 172 1.1E-18 T 23-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 RPE_RS22140 6a7ba687cdf331018db838df15e8f827 366 SMART SM00525 203 223 0.0022 T 23-04-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: REACT_216 RPE_RS22140 6a7ba687cdf331018db838df15e8f827 366 PANTHER PTHR10359 17 363 1.1E-96 T 23-04-2016 RPE_RS22140 6a7ba687cdf331018db838df15e8f827 366 SMART SM00478 53 202 5.8E-46 T 23-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 RPE_RS22140 6a7ba687cdf331018db838df15e8f827 366 Gene3D G3DSA:1.10.1670.10 137 236 3.6E-37 T 23-04-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal RPE_RS22140 6a7ba687cdf331018db838df15e8f827 366 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 21 277 3.2E-91 T 23-04-2016 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 RPE_RS23405 6d9ef83f63fff471e4bfc8ea3346c828 393 TIGRFAM TIGR03863 PQQ_ABC_bind: ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system 41 391 3.3E-148 T 23-04-2016 IPR022478 ABC transporter, substrate-binding protein, PQQ-dependent alcohol dehydrogenase system RPE_RS23405 6d9ef83f63fff471e4bfc8ea3346c828 393 SUPERFAMILY SSF53822 25 356 2.59E-31 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RPE_RS23405 6d9ef83f63fff471e4bfc8ea3346c828 393 Pfam PF13458 Periplasmic binding protein 26 201 4.8E-14 T 23-04-2016 IPR028081 Leucine-binding protein domain RPE_RS23405 6d9ef83f63fff471e4bfc8ea3346c828 393 Gene3D G3DSA:3.40.50.2300 25 206 2.5E-15 T 23-04-2016 RPE_RS18930 488663dd4bad3ffb4b222b79528d4221 337 Pfam PF02653 Branched-chain amino acid transport system / permease component 51 313 1.0E-30 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RPE_RS18930 488663dd4bad3ffb4b222b79528d4221 337 PANTHER PTHR30482 13 330 6.6E-128 T 23-04-2016 RPE_RS18930 488663dd4bad3ffb4b222b79528d4221 337 PANTHER PTHR30482:SF5 13 330 6.6E-128 T 23-04-2016 RPE_RS01705 a17e5fcfcc034bb68e76b9fc48d33a1c 292 PANTHER PTHR32308:SF0 3 289 7.1E-96 T 23-04-2016 RPE_RS01705 a17e5fcfcc034bb68e76b9fc48d33a1c 292 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 6 224 1.3E-47 T 23-04-2016 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 RPE_RS01705 a17e5fcfcc034bb68e76b9fc48d33a1c 292 PANTHER PTHR32308 3 289 7.1E-96 T 23-04-2016 IPR011206 Citrate lyase beta subunit-like RPE_RS01705 a17e5fcfcc034bb68e76b9fc48d33a1c 292 PIRSF PIRSF015582 1 292 2.2E-80 T 23-04-2016 IPR011206 Citrate lyase beta subunit-like RPE_RS01705 a17e5fcfcc034bb68e76b9fc48d33a1c 292 Gene3D G3DSA:3.20.20.60 2 235 6.3E-78 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RPE_RS01705 a17e5fcfcc034bb68e76b9fc48d33a1c 292 SUPERFAMILY SSF51621 1 235 2.51E-69 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RPE_RS09020 f47588d74e94c28b2b6751cd35c943a2 927 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 22 927 19.591 T 23-04-2016 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RPE_RS09020 f47588d74e94c28b2b6751cd35c943a2 927 PANTHER PTHR30523:SF0 1 927 0.0 T 23-04-2016 RPE_RS09020 f47588d74e94c28b2b6751cd35c943a2 927 Gene3D G3DSA:1.20.1440.90 296 419 1.2E-26 T 23-04-2016 RPE_RS09020 f47588d74e94c28b2b6751cd35c943a2 927 SUPERFAMILY SSF51621 30 927 0.0 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RPE_RS09020 f47588d74e94c28b2b6751cd35c943a2 927 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 580 592 - T 23-04-2016 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RPE_RS09020 f47588d74e94c28b2b6751cd35c943a2 927 Pfam PF00311 Phosphoenolpyruvate carboxylase 152 927 1.5E-284 T 23-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RPE_RS09020 f47588d74e94c28b2b6751cd35c943a2 927 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 266 281 2.9E-57 T 23-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RPE_RS09020 f47588d74e94c28b2b6751cd35c943a2 927 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 754 780 2.9E-57 T 23-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RPE_RS09020 f47588d74e94c28b2b6751cd35c943a2 927 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 208 224 2.9E-57 T 23-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RPE_RS09020 f47588d74e94c28b2b6751cd35c943a2 927 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 416 436 2.9E-57 T 23-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RPE_RS09020 f47588d74e94c28b2b6751cd35c943a2 927 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 620 649 2.9E-57 T 23-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RPE_RS09020 f47588d74e94c28b2b6751cd35c943a2 927 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 578 598 2.9E-57 T 23-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RPE_RS09020 f47588d74e94c28b2b6751cd35c943a2 927 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 155 168 2.9E-57 T 23-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RPE_RS09020 f47588d74e94c28b2b6751cd35c943a2 927 PANTHER PTHR30523 1 927 0.0 T 23-04-2016 RPE_RS09020 f47588d74e94c28b2b6751cd35c943a2 927 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 156 167 - T 23-04-2016 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RPE_RS11675 707db9e0e5ec88c95fda8153344c51cc 499 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 235 354 1.5E-15 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS11675 707db9e0e5ec88c95fda8153344c51cc 499 Pfam PF00989 PAS fold 2 108 4.6E-13 T 23-04-2016 IPR013767 PAS fold GO:0006355 RPE_RS11675 707db9e0e5ec88c95fda8153344c51cc 499 Gene3D G3DSA:3.40.50.2300 377 492 4.6E-29 T 23-04-2016 RPE_RS11675 707db9e0e5ec88c95fda8153344c51cc 499 SUPERFAMILY SSF55874 184 355 2.75E-37 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS11675 707db9e0e5ec88c95fda8153344c51cc 499 PANTHER PTHR24423 1 492 6.7E-192 T 23-04-2016 RPE_RS11675 707db9e0e5ec88c95fda8153344c51cc 499 PANTHER PTHR24423:SF438 1 492 6.7E-192 T 23-04-2016 RPE_RS11675 707db9e0e5ec88c95fda8153344c51cc 499 Gene3D G3DSA:3.30.565.10 193 354 1.7E-34 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS11675 707db9e0e5ec88c95fda8153344c51cc 499 Gene3D G3DSA:3.30.450.20 1 109 4.8E-22 T 23-04-2016 RPE_RS11675 707db9e0e5ec88c95fda8153344c51cc 499 PRINTS PR00344 Bacterial sensor protein C-terminal signature 286 300 1.2E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS11675 707db9e0e5ec88c95fda8153344c51cc 499 PRINTS PR00344 Bacterial sensor protein C-terminal signature 304 314 1.2E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS11675 707db9e0e5ec88c95fda8153344c51cc 499 PRINTS PR00344 Bacterial sensor protein C-terminal signature 317 335 1.2E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS11675 707db9e0e5ec88c95fda8153344c51cc 499 PRINTS PR00344 Bacterial sensor protein C-terminal signature 341 354 1.2E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS11675 707db9e0e5ec88c95fda8153344c51cc 499 SUPERFAMILY SSF52172 378 494 2.13E-25 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS11675 707db9e0e5ec88c95fda8153344c51cc 499 SMART SM00448 378 491 1.7E-20 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS11675 707db9e0e5ec88c95fda8153344c51cc 499 Pfam PF00072 Response regulator receiver domain 380 491 1.1E-14 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS11675 707db9e0e5ec88c95fda8153344c51cc 499 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 2 119 4.7E-25 T 23-04-2016 IPR000014 PAS domain RPE_RS11675 707db9e0e5ec88c95fda8153344c51cc 499 SMART SM00388 127 193 3.3E-6 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS11675 707db9e0e5ec88c95fda8153344c51cc 499 SMART SM00091 1 62 3.5E-5 T 23-04-2016 IPR000014 PAS domain RPE_RS11675 707db9e0e5ec88c95fda8153344c51cc 499 SUPERFAMILY SSF55785 7 119 3.66E-27 T 23-04-2016 IPR000014 PAS domain RPE_RS11675 707db9e0e5ec88c95fda8153344c51cc 499 SUPERFAMILY SSF47384 121 190 6.28E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS11675 707db9e0e5ec88c95fda8153344c51cc 499 Pfam PF00512 His Kinase A (phospho-acceptor) domain 129 191 1.9E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS11675 707db9e0e5ec88c95fda8153344c51cc 499 Gene3D G3DSA:1.10.287.130 122 189 2.0E-5 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS11675 707db9e0e5ec88c95fda8153344c51cc 499 SMART SM00387 234 357 8.8E-25 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS09190 e90347097b11a791a4094571360b6b9b 412 PANTHER PTHR21180:SF9 133 407 8.6E-119 T 23-04-2016 IPR023874 DNA modification/repair radical SAM protein, putative RPE_RS09190 e90347097b11a791a4094571360b6b9b 412 PANTHER PTHR21180 133 407 8.6E-119 T 23-04-2016 RPE_RS09190 e90347097b11a791a4094571360b6b9b 412 TIGRFAM TIGR03916 rSAM_link_UDG: putative DNA modification/repair radical SAM protein 3 396 2.5E-168 T 23-04-2016 IPR023874 DNA modification/repair radical SAM protein, putative RPE_RS09190 e90347097b11a791a4094571360b6b9b 412 SMART SM00729 56 290 0.0083 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RPE_RS09190 e90347097b11a791a4094571360b6b9b 412 Gene3D G3DSA:3.20.20.70 51 191 1.2E-11 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS09190 e90347097b11a791a4094571360b6b9b 412 SUPERFAMILY SSF47781 309 370 8.89E-9 T 23-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 RPE_RS09190 e90347097b11a791a4094571360b6b9b 412 SUPERFAMILY SSF102114 44 190 9.94E-16 T 23-04-2016 RPE_RS10760 73b3e188b975ce4b1bd1a8e8cb4ff29a 166 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 25 158 5.3E-16 T 23-04-2016 IPR009936 Protein of unknown function DUF1468 RPE_RS20560 92732cdd4f19653c69f422b1e7933ccb 201 Gene3D G3DSA:1.25.40.10 79 182 5.5E-20 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS20560 92732cdd4f19653c69f422b1e7933ccb 201 SMART SM00028 149 182 0.11 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS20560 92732cdd4f19653c69f422b1e7933ccb 201 SMART SM00028 115 148 5.3E-4 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS20560 92732cdd4f19653c69f422b1e7933ccb 201 SUPERFAMILY SSF48452 72 182 1.9E-19 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS20560 92732cdd4f19653c69f422b1e7933ccb 201 PANTHER PTHR23083 84 180 1.1E-13 T 23-04-2016 RPE_RS20560 92732cdd4f19653c69f422b1e7933ccb 201 Pfam PF13432 Tetratricopeptide repeat 121 180 9.1E-7 T 23-04-2016 RPE_RS14595 4e0ae8aa00c01415e690fde7fcf0053c 334 Pfam PF07549 SecD/SecF GG Motif 59 83 4.9E-9 T 23-04-2016 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site RPE_RS14595 4e0ae8aa00c01415e690fde7fcf0053c 334 Pfam PF02355 Protein export membrane protein 134 319 4.5E-65 T 23-04-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial RPE_RS14595 4e0ae8aa00c01415e690fde7fcf0053c 334 PANTHER PTHR30081 28 318 5.9E-73 T 23-04-2016 RPE_RS14595 4e0ae8aa00c01415e690fde7fcf0053c 334 Gene3D G3DSA:1.20.1640.10 129 329 3.8E-27 T 23-04-2016 RPE_RS14595 4e0ae8aa00c01415e690fde7fcf0053c 334 PRINTS PR01755 Bacterial translocase SecF protein signature 178 192 3.1E-31 T 23-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RPE_RS14595 4e0ae8aa00c01415e690fde7fcf0053c 334 PRINTS PR01755 Bacterial translocase SecF protein signature 226 244 3.1E-31 T 23-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RPE_RS14595 4e0ae8aa00c01415e690fde7fcf0053c 334 PRINTS PR01755 Bacterial translocase SecF protein signature 64 79 3.1E-31 T 23-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RPE_RS14595 4e0ae8aa00c01415e690fde7fcf0053c 334 PRINTS PR01755 Bacterial translocase SecF protein signature 258 273 3.1E-31 T 23-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RPE_RS14595 4e0ae8aa00c01415e690fde7fcf0053c 334 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 65 311 5.0E-78 T 23-04-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 RPE_RS14595 4e0ae8aa00c01415e690fde7fcf0053c 334 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 37 322 28.491 T 23-04-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 RPE_RS14595 4e0ae8aa00c01415e690fde7fcf0053c 334 SUPERFAMILY SSF82866 100 319 1.44E-38 T 23-04-2016 RPE_RS14595 4e0ae8aa00c01415e690fde7fcf0053c 334 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 125 308 4.9E-53 T 23-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RPE_RS23375 c05c1d42f2032f0b725a4be8f3180a31 121 Pfam PF00072 Response regulator receiver domain 4 115 1.3E-27 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS23375 c05c1d42f2032f0b725a4be8f3180a31 121 Gene3D G3DSA:3.40.50.2300 2 120 1.3E-37 T 23-04-2016 RPE_RS23375 c05c1d42f2032f0b725a4be8f3180a31 121 PANTHER PTHR26402:SF586 2 120 4.5E-44 T 23-04-2016 RPE_RS23375 c05c1d42f2032f0b725a4be8f3180a31 121 SUPERFAMILY SSF52172 1 120 1.32E-38 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS23375 c05c1d42f2032f0b725a4be8f3180a31 121 PANTHER PTHR26402 2 120 4.5E-44 T 23-04-2016 RPE_RS23375 c05c1d42f2032f0b725a4be8f3180a31 121 SMART SM00448 2 115 1.2E-38 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS20150 18a82df55e6ea70e4c154b000c418dff 94 Gene3D G3DSA:1.10.10.10 12 60 2.8E-5 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS20150 18a82df55e6ea70e4c154b000c418dff 94 Pfam PF12728 Helix-turn-helix domain 12 62 4.0E-7 T 23-04-2016 RPE_RS20150 18a82df55e6ea70e4c154b000c418dff 94 SUPERFAMILY SSF46955 11 59 5.86E-9 T 23-04-2016 IPR009061 Putative DNA-binding domain RPE_RS09195 a625d043d9d7a06cb8508cb699230bd7 260 SUPERFAMILY SSF52540 47 171 1.99E-19 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS09195 a625d043d9d7a06cb8508cb699230bd7 260 PIRSF PIRSF034285 1 259 8.4E-88 T 23-04-2016 IPR017026 Inducible mutagenesis protein A RPE_RS09195 a625d043d9d7a06cb8508cb699230bd7 260 Gene3D G3DSA:3.40.50.300 93 171 2.3E-11 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02275 44537c353f224e5e27f36d0762989136 218 PANTHER PTHR22854 1 217 8.0E-58 T 23-04-2016 RPE_RS02275 44537c353f224e5e27f36d0762989136 218 Gene3D G3DSA:3.20.20.70 5 211 1.1E-63 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS02275 44537c353f224e5e27f36d0762989136 218 PANTHER PTHR22854:SF6 1 217 8.0E-58 T 23-04-2016 RPE_RS02275 44537c353f224e5e27f36d0762989136 218 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 3 213 38.599 T 23-04-2016 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24|UniPathway: UPA00035 RPE_RS02275 44537c353f224e5e27f36d0762989136 218 SUPERFAMILY SSF51366 5 210 3.14E-56 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 RPE_RS02275 44537c353f224e5e27f36d0762989136 218 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 5 208 2.2E-41 T 23-04-2016 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24|UniPathway: UPA00035 RPE_RS19020 01a9119e191428529bb5c0b415a8197a 268 PANTHER PTHR11941:SF21 2 265 4.2E-80 T 23-04-2016 RPE_RS19020 01a9119e191428529bb5c0b415a8197a 268 SUPERFAMILY SSF52096 19 267 2.2E-64 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS19020 01a9119e191428529bb5c0b415a8197a 268 Gene3D G3DSA:3.90.226.10 13 261 5.8E-62 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS19020 01a9119e191428529bb5c0b415a8197a 268 Pfam PF00378 Enoyl-CoA hydratase/isomerase 25 262 9.9E-38 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RPE_RS19020 01a9119e191428529bb5c0b415a8197a 268 PANTHER PTHR11941 2 265 4.2E-80 T 23-04-2016 RPE_RS10060 4508f651d6429e4e158ed875887dbced 460 Pfam PF01565 FAD binding domain 40 175 2.0E-38 T 23-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RPE_RS10060 4508f651d6429e4e158ed875887dbced 460 Pfam PF02913 FAD linked oxidases, C-terminal domain 215 459 1.2E-48 T 23-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 RPE_RS10060 4508f651d6429e4e158ed875887dbced 460 Gene3D G3DSA:3.30.43.10 2 92 1.9E-16 T 23-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 RPE_RS10060 4508f651d6429e4e158ed875887dbced 460 Gene3D G3DSA:1.10.45.10 420 459 3.3E-14 T 23-04-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 RPE_RS10060 4508f651d6429e4e158ed875887dbced 460 Gene3D G3DSA:3.30.465.10 95 215 2.0E-41 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RPE_RS10060 4508f651d6429e4e158ed875887dbced 460 SUPERFAMILY SSF55103 188 460 3.11E-49 T 23-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RPE_RS10060 4508f651d6429e4e158ed875887dbced 460 PANTHER PTHR11748 4 460 2.3E-171 T 23-04-2016 RPE_RS10060 4508f651d6429e4e158ed875887dbced 460 SUPERFAMILY SSF56176 4 215 2.82E-66 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RPE_RS10060 4508f651d6429e4e158ed875887dbced 460 PANTHER PTHR11748:SF76 4 460 2.3E-171 T 23-04-2016 RPE_RS21545 fc940bc8b3f3d9c5b932b990cb4940e1 231 PANTHER PTHR20855:SF3 25 230 1.8E-39 T 23-04-2016 IPR005744 Hly-III GO:0016021|GO:0019835 RPE_RS21545 fc940bc8b3f3d9c5b932b990cb4940e1 231 Pfam PF03006 Haemolysin-III related 34 222 9.4E-26 T 23-04-2016 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 RPE_RS21545 fc940bc8b3f3d9c5b932b990cb4940e1 231 PANTHER PTHR20855 25 230 1.8E-39 T 23-04-2016 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 RPE_RS11040 43d2bee63357adb2bdf2a327d96c2ecb 255 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS11040 43d2bee63357adb2bdf2a327d96c2ecb 255 PANTHER PTHR24220:SF434 3 245 9.3E-109 T 23-04-2016 RPE_RS11040 43d2bee63357adb2bdf2a327d96c2ecb 255 SMART SM00382 26 213 2.0E-16 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS11040 43d2bee63357adb2bdf2a327d96c2ecb 255 PANTHER PTHR24220 3 245 9.3E-109 T 23-04-2016 RPE_RS11040 43d2bee63357adb2bdf2a327d96c2ecb 255 SUPERFAMILY SSF52540 1 229 8.78E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS11040 43d2bee63357adb2bdf2a327d96c2ecb 255 Gene3D G3DSA:3.40.50.300 1 234 5.0E-74 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS11040 43d2bee63357adb2bdf2a327d96c2ecb 255 Pfam PF00005 ABC transporter 18 163 8.3E-35 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS11670 83f49920cc45cf28e0c68b31a674e473 204 SUPERFAMILY SSF141371 12 88 1.53E-8 T 23-04-2016 RPE_RS11670 83f49920cc45cf28e0c68b31a674e473 204 SUPERFAMILY SSF141371 115 196 1.96E-7 T 23-04-2016 RPE_RS11670 83f49920cc45cf28e0c68b31a674e473 204 Pfam PF07238 PilZ domain 15 102 1.3E-7 T 23-04-2016 IPR009875 PilZ domain GO:0035438 RPE_RS11670 83f49920cc45cf28e0c68b31a674e473 204 Pfam PF07238 PilZ domain 118 198 1.9E-6 T 23-04-2016 IPR009875 PilZ domain GO:0035438 RPE_RS14540 ad61542fb0b4b6b4fcabb67111d3891a 168 Pfam PF12883 Protein of unknown function (DUF3828) 30 148 5.7E-10 T 23-04-2016 IPR024289 Domain of unknown function DUF3828 RPE_RS19145 9594baf67ce82d5396dbe914ddea4869 151 Gene3D G3DSA:1.20.5.40 116 142 1.0E-4 T 23-04-2016 RPE_RS19145 9594baf67ce82d5396dbe914ddea4869 151 PANTHER PTHR30461 6 150 5.4E-17 T 23-04-2016 RPE_RS19145 9594baf67ce82d5396dbe914ddea4869 151 Pfam PF00239 Resolvase, N terminal domain 6 142 5.6E-22 T 23-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RPE_RS19145 9594baf67ce82d5396dbe914ddea4869 151 SMART SM00857 5 143 1.3E-29 T 23-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RPE_RS19145 9594baf67ce82d5396dbe914ddea4869 151 SUPERFAMILY SSF53041 6 142 1.09E-22 T 23-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RPE_RS19145 9594baf67ce82d5396dbe914ddea4869 151 Gene3D G3DSA:3.40.50.1390 6 105 2.3E-14 T 23-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RPE_RS22680 beccf003454df0883e4ac369d93d0354 518 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 79 90 - T 23-04-2016 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 RPE_RS22680 beccf003454df0883e4ac369d93d0354 518 SUPERFAMILY SSF53146 384 494 1.57E-29 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis RPE_RS22680 beccf003454df0883e4ac369d93d0354 518 TIGRFAM TIGR01290 nifB: nitrogenase cofactor biosynthesis protein NifB 53 487 3.3E-208 T 23-04-2016 IPR005980 Nitrogenase cofactor biosynthesis protein NifB GO:0009108|GO:0009399 RPE_RS22680 beccf003454df0883e4ac369d93d0354 518 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 393 486 1.3E-18 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis RPE_RS22680 beccf003454df0883e4ac369d93d0354 518 SUPERFAMILY SSF102114 68 280 7.19E-34 T 23-04-2016 RPE_RS22680 beccf003454df0883e4ac369d93d0354 518 Pfam PF04055 Radical SAM superfamily 79 257 1.6E-26 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RPE_RS22680 beccf003454df0883e4ac369d93d0354 518 Gene3D G3DSA:3.20.20.70 68 334 2.2E-42 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS22680 beccf003454df0883e4ac369d93d0354 518 Gene3D G3DSA:3.30.420.130 383 491 2.6E-32 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis RPE_RS22680 beccf003454df0883e4ac369d93d0354 518 PANTHER PTHR11228:SF18 59 438 6.1E-123 T 23-04-2016 RPE_RS22680 beccf003454df0883e4ac369d93d0354 518 PANTHER PTHR11228 59 438 6.1E-123 T 23-04-2016 RPE_RS05895 43374f8c672d4ad4e2e1ef4989948873 147 Pfam PF03748 Flagellar basal body-associated protein FliL 57 147 1.5E-8 T 23-04-2016 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 RPE_RS11260 fbbdf53e8a4037ae4e9986676fbd4683 260 Pfam PF12570 Protein of unknown function (DUF3750) 67 195 9.8E-47 T 23-04-2016 IPR022224 Protein of unknown function DUF3750 RPE_RS18900 44811bece38d7b1ee45b04a092c6f5fc 558 Gene3D G3DSA:2.30.38.10 366 440 5.3E-25 T 23-04-2016 RPE_RS18900 44811bece38d7b1ee45b04a092c6f5fc 558 ProSitePatterns PS00455 Putative AMP-binding domain signature. 198 209 - T 23-04-2016 IPR020845 AMP-binding, conserved site RPE_RS18900 44811bece38d7b1ee45b04a092c6f5fc 558 TIGRFAM TIGR03205 pimA: dicarboxylate--CoA ligase PimA 3 541 0.0 T 23-04-2016 IPR017618 Dicarboxylate-CoA ligase PimA RPE_RS18900 44811bece38d7b1ee45b04a092c6f5fc 558 Pfam PF00501 AMP-binding enzyme 30 449 2.8E-98 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS18900 44811bece38d7b1ee45b04a092c6f5fc 558 PANTHER PTHR24096 5 543 3.7E-159 T 23-04-2016 RPE_RS18900 44811bece38d7b1ee45b04a092c6f5fc 558 Gene3D G3DSA:3.40.50.980 204 365 4.8E-40 T 23-04-2016 RPE_RS18900 44811bece38d7b1ee45b04a092c6f5fc 558 Gene3D G3DSA:3.40.50.980 23 203 1.2E-31 T 23-04-2016 RPE_RS18900 44811bece38d7b1ee45b04a092c6f5fc 558 SUPERFAMILY SSF56801 9 544 1.03E-148 T 23-04-2016 RPE_RS18900 44811bece38d7b1ee45b04a092c6f5fc 558 Gene3D G3DSA:3.30.300.30 444 542 9.6E-29 T 23-04-2016 RPE_RS18900 44811bece38d7b1ee45b04a092c6f5fc 558 Pfam PF13193 AMP-binding enzyme C-terminal domain 459 534 5.1E-20 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RPE_RS04735 4bdebf7726788c045ae6457fe5861dd5 333 SUPERFAMILY SSF52540 28 309 9.21E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS04735 4bdebf7726788c045ae6457fe5861dd5 333 PANTHER PTHR11603:SF156 1 328 1.2E-109 T 23-04-2016 RPE_RS04735 4bdebf7726788c045ae6457fe5861dd5 333 PANTHER PTHR11603 1 328 1.2E-109 T 23-04-2016 RPE_RS04735 4bdebf7726788c045ae6457fe5861dd5 333 Gene3D G3DSA:1.10.8.300 218 328 2.4E-28 T 23-04-2016 RPE_RS04735 4bdebf7726788c045ae6457fe5861dd5 333 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 54 187 8.2E-60 T 23-04-2016 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 RPE_RS04735 4bdebf7726788c045ae6457fe5861dd5 333 Gene3D G3DSA:3.40.50.300 36 203 1.9E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS04735 4bdebf7726788c045ae6457fe5861dd5 333 PIRSF PIRSF002849 2 333 4.8E-115 T 23-04-2016 IPR016366 ATPase chaperone, AAA-type, MoxR, predicted RPE_RS08070 1e9981206acd1ff2eacb6a99294d4d9f 90 Gene3D G3DSA:1.10.1220.10 16 38 2.7E-4 T 23-04-2016 IPR013321 Arc-type ribbon-helix-helix GO:0006355 RPE_RS08070 1e9981206acd1ff2eacb6a99294d4d9f 90 TIGRFAM TIGR02606 antidote_CC2985: putative addiction module antidote protein, CC2985 family 3 63 1.7E-13 T 23-04-2016 IPR022789 Antitoxin ParD RPE_RS08070 1e9981206acd1ff2eacb6a99294d4d9f 90 Pfam PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH 6 83 1.3E-5 T 23-04-2016 IPR022789 Antitoxin ParD RPE_RS08070 1e9981206acd1ff2eacb6a99294d4d9f 90 SUPERFAMILY SSF47598 1 43 1.78E-8 T 23-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 RPE_RS04705 5ea89c2a74d8c38e52a33621562a43db 376 PANTHER PTHR24023 47 376 1.2E-102 T 23-04-2016 RPE_RS04705 5ea89c2a74d8c38e52a33621562a43db 376 PANTHER PTHR24023:SF545 47 376 1.2E-102 T 23-04-2016 RPE_RS04705 5ea89c2a74d8c38e52a33621562a43db 376 Gene3D G3DSA:3.40.50.10540 20 220 1.6E-85 T 23-04-2016 IPR023606 CoA-transferase family III domain RPE_RS04705 5ea89c2a74d8c38e52a33621562a43db 376 Gene3D G3DSA:3.40.50.10540 306 360 1.6E-85 T 23-04-2016 IPR023606 CoA-transferase family III domain RPE_RS04705 5ea89c2a74d8c38e52a33621562a43db 376 Gene3D G3DSA:3.30.1540.10 236 305 2.7E-8 T 23-04-2016 RPE_RS04705 5ea89c2a74d8c38e52a33621562a43db 376 Pfam PF02515 CoA-transferase family III 22 358 1.9E-72 T 23-04-2016 IPR003673 CoA-transferase family III GO:0003824 RPE_RS04705 5ea89c2a74d8c38e52a33621562a43db 376 SUPERFAMILY SSF89796 20 359 2.35E-104 T 23-04-2016 IPR023606 CoA-transferase family III domain RPE_RS13465 ac7bb552d6fdfe43b719729c26c8fd40 361 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 139 150 - T 23-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RPE_RS13465 ac7bb552d6fdfe43b719729c26c8fd40 361 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 3 329 2.9E-91 T 23-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RPE_RS13465 ac7bb552d6fdfe43b719729c26c8fd40 361 SUPERFAMILY SSF51569 3 328 6.15E-97 T 23-04-2016 RPE_RS13465 ac7bb552d6fdfe43b719729c26c8fd40 361 PANTHER PTHR30304 1 351 2.2E-111 T 23-04-2016 RPE_RS13465 ac7bb552d6fdfe43b719729c26c8fd40 361 TIGRFAM TIGR01521 FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype 3 349 6.5E-189 T 23-04-2016 IPR006412 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385|UniPathway: UPA00109 RPE_RS13465 ac7bb552d6fdfe43b719729c26c8fd40 361 Pfam PF01116 Fructose-bisphosphate aldolase class-II 5 327 5.0E-88 T 23-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RPE_RS13465 ac7bb552d6fdfe43b719729c26c8fd40 361 Gene3D G3DSA:3.20.20.70 1 335 1.4E-102 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS13465 ac7bb552d6fdfe43b719729c26c8fd40 361 PIRSF PIRSF001359 1 329 1.2E-76 T 23-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RPE_RS13465 ac7bb552d6fdfe43b719729c26c8fd40 361 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 72 85 - T 23-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RPE_RS06305 b011f0f232bf61325858e15ab56486e8 348 Pfam PF00586 AIR synthase related protein, N-terminal domain 53 161 4.5E-16 T 23-04-2016 IPR016188 PurM-like, N-terminal domain RPE_RS06305 b011f0f232bf61325858e15ab56486e8 348 PANTHER PTHR30303 12 348 8.7E-166 T 23-04-2016 RPE_RS06305 b011f0f232bf61325858e15ab56486e8 348 TIGRFAM TIGR02124 hypE: hydrogenase expression/formation protein HypE 16 348 3.4E-141 T 23-04-2016 IPR011854 Hydrogenase expression/formation protein HypE RPE_RS06305 b011f0f232bf61325858e15ab56486e8 348 PIRSF PIRSF005644 12 348 7.8E-129 T 23-04-2016 IPR011854 Hydrogenase expression/formation protein HypE RPE_RS06305 b011f0f232bf61325858e15ab56486e8 348 Gene3D G3DSA:3.30.1330.10 30 162 1.4E-23 T 23-04-2016 IPR016188 PurM-like, N-terminal domain RPE_RS06305 b011f0f232bf61325858e15ab56486e8 348 Pfam PF02769 AIR synthase related protein, C-terminal domain 173 325 8.0E-33 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RPE_RS06305 b011f0f232bf61325858e15ab56486e8 348 Gene3D G3DSA:3.90.650.10 171 324 5.8E-30 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RPE_RS06305 b011f0f232bf61325858e15ab56486e8 348 PANTHER PTHR30303:SF0 12 348 8.7E-166 T 23-04-2016 RPE_RS06305 b011f0f232bf61325858e15ab56486e8 348 SUPERFAMILY SSF56042 169 344 3.89E-48 T 23-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain RPE_RS06305 b011f0f232bf61325858e15ab56486e8 348 SUPERFAMILY SSF55326 18 162 1.74E-34 T 23-04-2016 RPE_RS23915 595b5fd709b346052e27151278293880 1166 SUPERFAMILY SSF55785 634 753 2.26E-5 T 23-04-2016 IPR000014 PAS domain RPE_RS23915 595b5fd709b346052e27151278293880 1166 PANTHER PTHR24423 13 62 1.3E-196 T 23-04-2016 RPE_RS23915 595b5fd709b346052e27151278293880 1166 PANTHER PTHR24423 779 1166 1.3E-196 T 23-04-2016 RPE_RS23915 595b5fd709b346052e27151278293880 1166 PANTHER PTHR24423 639 753 1.3E-196 T 23-04-2016 RPE_RS23915 595b5fd709b346052e27151278293880 1166 PANTHER PTHR24423 216 235 1.3E-196 T 23-04-2016 RPE_RS23915 595b5fd709b346052e27151278293880 1166 PANTHER PTHR24423:SF439 13 62 1.3E-196 T 23-04-2016 RPE_RS23915 595b5fd709b346052e27151278293880 1166 PANTHER PTHR24423:SF439 779 1166 1.3E-196 T 23-04-2016 RPE_RS23915 595b5fd709b346052e27151278293880 1166 PANTHER PTHR24423:SF439 639 753 1.3E-196 T 23-04-2016 RPE_RS23915 595b5fd709b346052e27151278293880 1166 PANTHER PTHR24423:SF439 216 235 1.3E-196 T 23-04-2016 RPE_RS23915 595b5fd709b346052e27151278293880 1166 SUPERFAMILY SSF55874 856 1015 6.68E-32 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS23915 595b5fd709b346052e27151278293880 1166 SUPERFAMILY SSF47384 784 865 5.69E-12 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS23915 595b5fd709b346052e27151278293880 1166 Pfam PF00072 Response regulator receiver domain 1043 1153 2.2E-10 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS23915 595b5fd709b346052e27151278293880 1166 Gene3D G3DSA:3.30.450.20 634 753 2.9E-7 T 23-04-2016 RPE_RS23915 595b5fd709b346052e27151278293880 1166 SUPERFAMILY SSF52172 1038 1158 5.12E-16 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS23915 595b5fd709b346052e27151278293880 1166 SMART SM00388 800 865 7.9E-14 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS23915 595b5fd709b346052e27151278293880 1166 Pfam PF00512 His Kinase A (phospho-acceptor) domain 800 865 2.1E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS23915 595b5fd709b346052e27151278293880 1166 Gene3D G3DSA:3.40.50.2300 1038 1157 3.9E-17 T 23-04-2016 RPE_RS23915 595b5fd709b346052e27151278293880 1166 SMART SM00387 909 1019 8.3E-23 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS23915 595b5fd709b346052e27151278293880 1166 Gene3D G3DSA:3.30.565.10 868 1019 3.0E-32 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS23915 595b5fd709b346052e27151278293880 1166 Gene3D G3DSA:1.10.287.130 794 861 1.9E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS23915 595b5fd709b346052e27151278293880 1166 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 910 1016 1.3E-15 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS23915 595b5fd709b346052e27151278293880 1166 PRINTS PR00344 Bacterial sensor protein C-terminal signature 979 997 2.3E-7 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS23915 595b5fd709b346052e27151278293880 1166 PRINTS PR00344 Bacterial sensor protein C-terminal signature 963 973 2.3E-7 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS23915 595b5fd709b346052e27151278293880 1166 PRINTS PR00344 Bacterial sensor protein C-terminal signature 945 959 2.3E-7 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS23915 595b5fd709b346052e27151278293880 1166 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1003 1016 2.3E-7 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS23915 595b5fd709b346052e27151278293880 1166 Pfam PF12860 PAS fold 647 759 8.9E-28 T 23-04-2016 RPE_RS23915 595b5fd709b346052e27151278293880 1166 SMART SM00448 1041 1154 2.1E-8 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS07455 3b18bbc28750730fb6bbaa357ad45548 520 Gene3D G3DSA:3.40.50.2300 401 519 8.6E-15 T 23-04-2016 RPE_RS07455 3b18bbc28750730fb6bbaa357ad45548 520 PANTHER PTHR24423 142 519 1.0E-133 T 23-04-2016 RPE_RS07455 3b18bbc28750730fb6bbaa357ad45548 520 PANTHER PTHR24423 11 24 1.0E-133 T 23-04-2016 RPE_RS07455 3b18bbc28750730fb6bbaa357ad45548 520 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 266 386 3.5E-15 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS07455 3b18bbc28750730fb6bbaa357ad45548 520 PANTHER PTHR24423:SF438 142 519 1.0E-133 T 23-04-2016 RPE_RS07455 3b18bbc28750730fb6bbaa357ad45548 520 PANTHER PTHR24423:SF438 11 24 1.0E-133 T 23-04-2016 RPE_RS07455 3b18bbc28750730fb6bbaa357ad45548 520 SUPERFAMILY SSF47384 150 222 6.28E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS07455 3b18bbc28750730fb6bbaa357ad45548 520 Pfam PF00512 His Kinase A (phospho-acceptor) domain 159 222 1.9E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS07455 3b18bbc28750730fb6bbaa357ad45548 520 SMART SM00387 265 388 3.2E-21 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS07455 3b18bbc28750730fb6bbaa357ad45548 520 Gene3D G3DSA:1.10.287.130 151 210 2.2E-5 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS07455 3b18bbc28750730fb6bbaa357ad45548 520 SUPERFAMILY SSF55874 214 389 1.26E-35 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS07455 3b18bbc28750730fb6bbaa357ad45548 520 SUPERFAMILY SSF52172 402 519 2.85E-12 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS07455 3b18bbc28750730fb6bbaa357ad45548 520 SMART SM00388 158 224 2.7E-5 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS07455 3b18bbc28750730fb6bbaa357ad45548 520 PRINTS PR00344 Bacterial sensor protein C-terminal signature 317 331 4.8E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS07455 3b18bbc28750730fb6bbaa357ad45548 520 PRINTS PR00344 Bacterial sensor protein C-terminal signature 348 366 4.8E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS07455 3b18bbc28750730fb6bbaa357ad45548 520 PRINTS PR00344 Bacterial sensor protein C-terminal signature 335 345 4.8E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS07455 3b18bbc28750730fb6bbaa357ad45548 520 PRINTS PR00344 Bacterial sensor protein C-terminal signature 372 385 4.8E-14 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS07455 3b18bbc28750730fb6bbaa357ad45548 520 Gene3D G3DSA:3.30.565.10 211 388 5.6E-33 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS24195 3a418dfdc56eaef86727a7954d19a125 224 PANTHER PTHR10438:SF244 102 147 1.3E-16 T 23-04-2016 RPE_RS24195 3a418dfdc56eaef86727a7954d19a125 224 SUPERFAMILY SSF52833 60 222 1.0E-34 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS24195 3a418dfdc56eaef86727a7954d19a125 224 Gene3D G3DSA:3.40.30.10 68 223 2.9E-38 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS24195 3a418dfdc56eaef86727a7954d19a125 224 Pfam PF08534 Redoxin 82 210 5.2E-23 T 23-04-2016 IPR013740 Redoxin GO:0016491 RPE_RS24195 3a418dfdc56eaef86727a7954d19a125 224 ProSitePatterns PS00194 Thioredoxin family active site. 107 125 - T 23-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 RPE_RS24195 3a418dfdc56eaef86727a7954d19a125 224 PANTHER PTHR10438 102 147 1.3E-16 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RPE_RS18625 c90d92739930100119c7d9ea30d64e3f 930 SMART SM00642 13 498 2.0E-6 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RPE_RS18625 c90d92739930100119c7d9ea30d64e3f 930 Gene3D G3DSA:3.20.20.80 581 621 6.5E-73 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RPE_RS18625 c90d92739930100119c7d9ea30d64e3f 930 Gene3D G3DSA:3.20.20.80 312 392 6.5E-73 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RPE_RS18625 c90d92739930100119c7d9ea30d64e3f 930 Gene3D G3DSA:3.20.20.80 731 855 6.5E-73 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RPE_RS18625 c90d92739930100119c7d9ea30d64e3f 930 Gene3D G3DSA:3.20.20.80 6 98 6.5E-73 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RPE_RS18625 c90d92739930100119c7d9ea30d64e3f 930 TIGRFAM TIGR02401 trehalose_TreY: malto-oligosyltrehalose synthase 6 883 0.0 T 23-04-2016 IPR012767 Malto-oligosyltrehalose synthase MetaCyc: PWY-2661 RPE_RS18625 c90d92739930100119c7d9ea30d64e3f 930 Gene3D G3DSA:1.10.10.470 622 724 3.5E-30 T 23-04-2016 IPR013797 Maltooligosyl trehalose synthase, N-terminal MetaCyc: PWY-2661 RPE_RS18625 c90d92739930100119c7d9ea30d64e3f 930 SUPERFAMILY SSF51445 250 494 4.29E-136 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RPE_RS18625 c90d92739930100119c7d9ea30d64e3f 930 SUPERFAMILY SSF51445 5 179 4.29E-136 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RPE_RS18625 c90d92739930100119c7d9ea30d64e3f 930 SUPERFAMILY SSF51445 531 821 4.29E-136 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RPE_RS18625 c90d92739930100119c7d9ea30d64e3f 930 Pfam PF00128 Alpha amylase, catalytic domain 28 98 6.4E-16 T 23-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RPE_RS18625 c90d92739930100119c7d9ea30d64e3f 930 Gene3D G3DSA:1.10.150.200 515 547 2.9E-8 T 23-04-2016 RPE_RS18625 c90d92739930100119c7d9ea30d64e3f 930 Gene3D G3DSA:1.10.150.200 416 478 2.9E-8 T 23-04-2016 RPE_RS18625 c90d92739930100119c7d9ea30d64e3f 930 PANTHER PTHR10357:SF166 20 127 3.2E-157 T 23-04-2016 RPE_RS18625 c90d92739930100119c7d9ea30d64e3f 930 PANTHER PTHR10357:SF166 264 424 3.2E-157 T 23-04-2016 RPE_RS18625 c90d92739930100119c7d9ea30d64e3f 930 PANTHER PTHR10357:SF166 723 927 3.2E-157 T 23-04-2016 RPE_RS18625 c90d92739930100119c7d9ea30d64e3f 930 Gene3D G3DSA:3.30.1590.10 258 296 1.6E-40 T 23-04-2016 RPE_RS18625 c90d92739930100119c7d9ea30d64e3f 930 Gene3D G3DSA:3.30.1590.10 99 182 1.6E-40 T 23-04-2016 RPE_RS18625 c90d92739930100119c7d9ea30d64e3f 930 PANTHER PTHR10357 20 127 3.2E-157 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RPE_RS18625 c90d92739930100119c7d9ea30d64e3f 930 PANTHER PTHR10357 264 424 3.2E-157 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RPE_RS18625 c90d92739930100119c7d9ea30d64e3f 930 PANTHER PTHR10357 723 927 3.2E-157 T 23-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 RPE_RS17710 8e576fa6ffcfe97bc1777ad4e972ebcd 713 Pfam PF13365 Trypsin-like peptidase domain 97 249 9.2E-18 T 23-04-2016 RPE_RS17710 8e576fa6ffcfe97bc1777ad4e972ebcd 713 SMART SM00477 447 661 3.2E-10 T 23-04-2016 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 RPE_RS17710 8e576fa6ffcfe97bc1777ad4e972ebcd 713 SUPERFAMILY SSF54060 440 658 2.47E-41 T 23-04-2016 RPE_RS17710 8e576fa6ffcfe97bc1777ad4e972ebcd 713 SMART SM00892 446 661 2.5E-48 T 23-04-2016 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 RPE_RS17710 8e576fa6ffcfe97bc1777ad4e972ebcd 713 Gene3D G3DSA:2.40.10.10 164 258 4.3E-18 T 23-04-2016 RPE_RS17710 8e576fa6ffcfe97bc1777ad4e972ebcd 713 SUPERFAMILY SSF50494 70 266 2.45E-29 T 23-04-2016 IPR009003 Peptidase S1, PA clan RPE_RS17710 8e576fa6ffcfe97bc1777ad4e972ebcd 713 Gene3D G3DSA:3.40.570.10 437 658 2.1E-37 T 23-04-2016 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 RPE_RS17710 8e576fa6ffcfe97bc1777ad4e972ebcd 713 Pfam PF01223 DNA/RNA non-specific endonuclease 439 658 1.8E-40 T 23-04-2016 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 RPE_RS17710 8e576fa6ffcfe97bc1777ad4e972ebcd 713 Gene3D G3DSA:2.40.10.10 82 163 8.8E-11 T 23-04-2016 RPE_RS06100 a7a937b0d2ed89bf96d1476b36c719c1 1030 Gene3D G3DSA:1.10.287.130 629 697 1.7E-14 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS06100 a7a937b0d2ed89bf96d1476b36c719c1 1030 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 748 860 5.6E-29 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS06100 a7a937b0d2ed89bf96d1476b36c719c1 1030 SUPERFAMILY SSF55874 690 860 2.36E-44 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS06100 a7a937b0d2ed89bf96d1476b36c719c1 1030 Gene3D G3DSA:3.30.450.20 467 587 4.3E-11 T 23-04-2016 RPE_RS06100 a7a937b0d2ed89bf96d1476b36c719c1 1030 Pfam PF08447 PAS fold 367 452 2.0E-11 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 RPE_RS06100 a7a937b0d2ed89bf96d1476b36c719c1 1030 SMART SM00388 636 701 1.3E-22 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS06100 a7a937b0d2ed89bf96d1476b36c719c1 1030 Pfam PF12860 PAS fold 476 592 1.3E-14 T 23-04-2016 RPE_RS06100 a7a937b0d2ed89bf96d1476b36c719c1 1030 PANTHER PTHR24423 300 603 2.5E-168 T 23-04-2016 RPE_RS06100 a7a937b0d2ed89bf96d1476b36c719c1 1030 PANTHER PTHR24423 632 1004 2.5E-168 T 23-04-2016 RPE_RS06100 a7a937b0d2ed89bf96d1476b36c719c1 1030 SUPERFAMILY SSF47384 623 702 2.55E-19 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS06100 a7a937b0d2ed89bf96d1476b36c719c1 1030 Gene3D G3DSA:3.30.450.20 104 184 7.3E-7 T 23-04-2016 RPE_RS06100 a7a937b0d2ed89bf96d1476b36c719c1 1030 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 357 464 5.4E-13 T 23-04-2016 IPR000014 PAS domain RPE_RS06100 a7a937b0d2ed89bf96d1476b36c719c1 1030 Gene3D G3DSA:3.30.565.10 703 860 2.0E-45 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS06100 a7a937b0d2ed89bf96d1476b36c719c1 1030 SMART SM00086 416 458 2.5E-9 T 23-04-2016 IPR001610 PAC motif RPE_RS06100 a7a937b0d2ed89bf96d1476b36c719c1 1030 Pfam PF00512 His Kinase A (phospho-acceptor) domain 636 701 7.1E-17 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS06100 a7a937b0d2ed89bf96d1476b36c719c1 1030 SUPERFAMILY SSF55785 355 461 4.54E-18 T 23-04-2016 IPR000014 PAS domain RPE_RS06100 a7a937b0d2ed89bf96d1476b36c719c1 1030 Pfam PF02743 Cache domain 43 279 1.2E-18 T 23-04-2016 IPR033479 Double Cache domain 1 RPE_RS06100 a7a937b0d2ed89bf96d1476b36c719c1 1030 SUPERFAMILY SSF52172 886 1004 1.85E-34 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS06100 a7a937b0d2ed89bf96d1476b36c719c1 1030 Gene3D G3DSA:3.40.50.2300 886 1004 1.2E-37 T 23-04-2016 RPE_RS06100 a7a937b0d2ed89bf96d1476b36c719c1 1030 Gene3D G3DSA:3.30.450.20 334 466 1.4E-21 T 23-04-2016 RPE_RS06100 a7a937b0d2ed89bf96d1476b36c719c1 1030 SMART SM00387 748 864 3.0E-42 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS06100 a7a937b0d2ed89bf96d1476b36c719c1 1030 SMART SM00448 885 999 1.4E-34 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS06100 a7a937b0d2ed89bf96d1476b36c719c1 1030 PRINTS PR00344 Bacterial sensor protein C-terminal signature 789 803 5.5E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS06100 a7a937b0d2ed89bf96d1476b36c719c1 1030 PRINTS PR00344 Bacterial sensor protein C-terminal signature 807 817 5.5E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS06100 a7a937b0d2ed89bf96d1476b36c719c1 1030 PRINTS PR00344 Bacterial sensor protein C-terminal signature 824 842 5.5E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS06100 a7a937b0d2ed89bf96d1476b36c719c1 1030 PRINTS PR00344 Bacterial sensor protein C-terminal signature 848 861 5.5E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS06100 a7a937b0d2ed89bf96d1476b36c719c1 1030 SUPERFAMILY SSF55785 455 586 1.43E-8 T 23-04-2016 IPR000014 PAS domain RPE_RS06100 a7a937b0d2ed89bf96d1476b36c719c1 1030 Pfam PF00072 Response regulator receiver domain 887 999 5.9E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS06100 a7a937b0d2ed89bf96d1476b36c719c1 1030 Gene3D G3DSA:3.30.450.20 185 291 2.0E-9 T 23-04-2016 RPE_RS21960 852ace91a09b01ed878006190fc54aa3 168 Gene3D G3DSA:3.90.190.10 14 131 9.8E-11 T 23-04-2016 IPR029021 Protein-tyrosine phosphatase-like RPE_RS21960 852ace91a09b01ed878006190fc54aa3 168 SUPERFAMILY SSF52799 55 150 2.12E-15 T 23-04-2016 IPR029021 Protein-tyrosine phosphatase-like RPE_RS21960 852ace91a09b01ed878006190fc54aa3 168 Pfam PF00782 Dual specificity phosphatase, catalytic domain 21 95 3.0E-6 T 23-04-2016 IPR000340 Dual specificity phosphatase, catalytic domain GO:0006470|GO:0008138 RPE_RS01465 183e258a10d4fa2eab57420e9135abd6 248 PANTHER PTHR24322 157 188 1.2E-46 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS01465 183e258a10d4fa2eab57420e9135abd6 248 PANTHER PTHR24322 8 140 1.2E-46 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS01465 183e258a10d4fa2eab57420e9135abd6 248 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 193 0.0052 T 23-04-2016 RPE_RS01465 183e258a10d4fa2eab57420e9135abd6 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 4.7E-37 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS01465 183e258a10d4fa2eab57420e9135abd6 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 4.7E-37 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS01465 183e258a10d4fa2eab57420e9135abd6 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 4.7E-37 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS01465 183e258a10d4fa2eab57420e9135abd6 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 4.7E-37 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS01465 183e258a10d4fa2eab57420e9135abd6 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 4.7E-37 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS01465 183e258a10d4fa2eab57420e9135abd6 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 4.7E-37 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS01465 183e258a10d4fa2eab57420e9135abd6 248 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RPE_RS01465 183e258a10d4fa2eab57420e9135abd6 248 SUPERFAMILY SSF51735 2 247 1.3E-70 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS01465 183e258a10d4fa2eab57420e9135abd6 248 Gene3D G3DSA:3.40.50.720 1 248 1.3E-74 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS01465 183e258a10d4fa2eab57420e9135abd6 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 1.7E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS01465 183e258a10d4fa2eab57420e9135abd6 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 1.7E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS01465 183e258a10d4fa2eab57420e9135abd6 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 1.7E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS01465 183e258a10d4fa2eab57420e9135abd6 248 PANTHER PTHR24322:SF649 157 188 1.2E-46 T 23-04-2016 RPE_RS01465 183e258a10d4fa2eab57420e9135abd6 248 PANTHER PTHR24322:SF649 8 140 1.2E-46 T 23-04-2016 RPE_RS01465 183e258a10d4fa2eab57420e9135abd6 248 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 247 1.2E-53 T 23-04-2016 RPE_RS06375 44a88ee95eb462a309075881d6f31a87 409 Gene3D G3DSA:3.50.50.60 109 304 2.8E-50 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS06375 44a88ee95eb462a309075881d6f31a87 409 SUPERFAMILY SSF51905 4 188 1.3E-41 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS06375 44a88ee95eb462a309075881d6f31a87 409 Gene3D G3DSA:3.50.50.60 2 108 7.2E-28 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS06375 44a88ee95eb462a309075881d6f31a87 409 PANTHER PTHR22912:SF1 1 381 5.4E-139 T 23-04-2016 RPE_RS06375 44a88ee95eb462a309075881d6f31a87 409 SUPERFAMILY SSF51905 146 304 1.62E-32 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS06375 44a88ee95eb462a309075881d6f31a87 409 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 232 246 1.1E-12 T 23-04-2016 RPE_RS06375 44a88ee95eb462a309075881d6f31a87 409 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 271 278 1.1E-12 T 23-04-2016 RPE_RS06375 44a88ee95eb462a309075881d6f31a87 409 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 146 171 1.1E-12 T 23-04-2016 RPE_RS06375 44a88ee95eb462a309075881d6f31a87 409 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 1.1E-12 T 23-04-2016 RPE_RS06375 44a88ee95eb462a309075881d6f31a87 409 PANTHER PTHR22912 1 381 5.4E-139 T 23-04-2016 RPE_RS06375 44a88ee95eb462a309075881d6f31a87 409 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 281 7.3E-55 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS06375 44a88ee95eb462a309075881d6f31a87 409 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 101 119 3.7E-21 T 23-04-2016 RPE_RS06375 44a88ee95eb462a309075881d6f31a87 409 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 3.7E-21 T 23-04-2016 RPE_RS06375 44a88ee95eb462a309075881d6f31a87 409 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 146 164 3.7E-21 T 23-04-2016 RPE_RS06375 44a88ee95eb462a309075881d6f31a87 409 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 231 247 3.7E-21 T 23-04-2016 RPE_RS06375 44a88ee95eb462a309075881d6f31a87 409 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 256 278 3.7E-21 T 23-04-2016 RPE_RS10265 be759c505f9525783d36d536503d61fb 414 Pfam PF01471 Putative peptidoglycan binding domain 355 410 2.0E-10 T 23-04-2016 IPR002477 Peptidoglycan binding-like RPE_RS10265 be759c505f9525783d36d536503d61fb 414 PANTHER PTHR30163:SF2 31 414 7.6E-145 T 23-04-2016 RPE_RS10265 be759c505f9525783d36d536503d61fb 414 Gene3D G3DSA:1.10.530.10 86 142 2.5E-45 T 23-04-2016 RPE_RS10265 be759c505f9525783d36d536503d61fb 414 Gene3D G3DSA:1.10.530.10 223 338 2.5E-45 T 23-04-2016 RPE_RS10265 be759c505f9525783d36d536503d61fb 414 Pfam PF13406 Transglycosylase SLT domain 33 335 6.7E-88 T 23-04-2016 IPR031304 Transglycosylase SLT domain 2 RPE_RS10265 be759c505f9525783d36d536503d61fb 414 SUPERFAMILY SSF53955 17 337 6.56E-85 T 23-04-2016 IPR023346 Lysozyme-like domain RPE_RS10265 be759c505f9525783d36d536503d61fb 414 Gene3D G3DSA:1.10.101.10 354 413 2.2E-9 T 23-04-2016 IPR002477 Peptidoglycan binding-like RPE_RS10265 be759c505f9525783d36d536503d61fb 414 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 33 337 1.4E-106 T 23-04-2016 IPR011970 Lytic murein transglycosylase RPE_RS10265 be759c505f9525783d36d536503d61fb 414 PANTHER PTHR30163 31 414 7.6E-145 T 23-04-2016 IPR011757 Lytic transglycosylase MltB RPE_RS10265 be759c505f9525783d36d536503d61fb 414 SUPERFAMILY SSF47090 342 411 2.41E-12 T 23-04-2016 IPR002477 Peptidoglycan binding-like RPE_RS16845 59d95ffb9e4ed7e398e410af08306489 95 SUPERFAMILY SSF141000 2 93 7.98E-29 T 23-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RPE_RS16845 59d95ffb9e4ed7e398e410af08306489 95 PANTHER PTHR15004 1 95 1.0E-30 T 23-04-2016 RPE_RS16845 59d95ffb9e4ed7e398e410af08306489 95 PANTHER PTHR15004:SF0 1 95 1.0E-30 T 23-04-2016 RPE_RS16845 59d95ffb9e4ed7e398e410af08306489 95 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 2 95 23.345 T 23-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RPE_RS16845 59d95ffb9e4ed7e398e410af08306489 95 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 20 90 4.6E-20 T 23-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RPE_RS16845 59d95ffb9e4ed7e398e410af08306489 95 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 3 95 5.3E-29 T 23-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RPE_RS16120 5ee3e43a763b40687c7b708ee30c6d72 709 Pfam PF01968 Hydantoinase/oxoprolinase 208 494 4.1E-90 T 23-04-2016 IPR002821 Hydantoinase/oxoprolinase GO:0016787 RPE_RS16120 5ee3e43a763b40687c7b708ee30c6d72 709 Pfam PF05378 Hydantoinase/oxoprolinase N-terminal region 4 187 9.6E-43 T 23-04-2016 IPR008040 Hydantoinaseoxoprolinase, N-terminal RPE_RS16120 5ee3e43a763b40687c7b708ee30c6d72 709 PANTHER PTHR11365 1 682 7.2E-165 T 23-04-2016 RPE_RS13295 3eea63b72598560294479fa4b311c45f 324 PANTHER PTHR30273 7 323 2.7E-40 T 23-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component RPE_RS13295 3eea63b72598560294479fa4b311c45f 324 PANTHER PTHR30273:SF2 7 323 2.7E-40 T 23-04-2016 RPE_RS13295 3eea63b72598560294479fa4b311c45f 324 PIRSF PIRSF018266 4 323 7.5E-64 T 23-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component RPE_RS13295 3eea63b72598560294479fa4b311c45f 324 Pfam PF04773 FecR protein 120 213 2.2E-14 T 23-04-2016 IPR006860 FecR protein RPE_RS13295 3eea63b72598560294479fa4b311c45f 324 Pfam PF16220 Domain of unknown function (DUF4880) 15 56 3.1E-8 T 23-04-2016 IPR032623 FecR, N-terminal RPE_RS16930 0799eded84c5980fe562937d76cfc572 919 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 298 307 6.8E-33 T 23-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 RPE_RS16930 0799eded84c5980fe562937d76cfc572 919 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 164 182 6.8E-33 T 23-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 RPE_RS16930 0799eded84c5980fe562937d76cfc572 919 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 484 498 6.8E-33 T 23-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 RPE_RS16930 0799eded84c5980fe562937d76cfc572 919 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 376 392 6.8E-33 T 23-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 RPE_RS16930 0799eded84c5980fe562937d76cfc572 919 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 75 88 6.8E-33 T 23-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 RPE_RS16930 0799eded84c5980fe562937d76cfc572 919 PANTHER PTHR11390:SF27 1 672 0.0 T 23-04-2016 RPE_RS16930 0799eded84c5980fe562937d76cfc572 919 Pfam PF01131 DNA topoisomerase 130 558 4.6E-122 T 23-04-2016 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RPE_RS16930 0799eded84c5980fe562937d76cfc572 919 Gene3D G3DSA:3.40.50.140 1 135 8.0E-43 T 23-04-2016 IPR006171 Toprim domain RPE_RS16930 0799eded84c5980fe562937d76cfc572 919 Gene3D G3DSA:3.30.65.10 604 639 4.1E-11 T 23-04-2016 RPE_RS16930 0799eded84c5980fe562937d76cfc572 919 Pfam PF13368 Topoisomerase C-terminal repeat 786 839 1.6E-14 T 23-04-2016 IPR025589 Topoisomerase C-terminal repeat RPE_RS16930 0799eded84c5980fe562937d76cfc572 919 Pfam PF13368 Topoisomerase C-terminal repeat 653 715 4.2E-13 T 23-04-2016 IPR025589 Topoisomerase C-terminal repeat RPE_RS16930 0799eded84c5980fe562937d76cfc572 919 Pfam PF13368 Topoisomerase C-terminal repeat 717 769 2.5E-22 T 23-04-2016 IPR025589 Topoisomerase C-terminal repeat RPE_RS16930 0799eded84c5980fe562937d76cfc572 919 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 3 637 3.4E-235 T 23-04-2016 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 RPE_RS16930 0799eded84c5980fe562937d76cfc572 919 Gene3D G3DSA:2.70.20.10 188 320 1.1E-30 T 23-04-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 RPE_RS16930 0799eded84c5980fe562937d76cfc572 919 Gene3D G3DSA:2.70.20.10 323 460 2.0E-40 T 23-04-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 RPE_RS16930 0799eded84c5980fe562937d76cfc572 919 SUPERFAMILY SSF56712 603 611 3.4E-184 T 23-04-2016 IPR023405 DNA topoisomerase, type IA, core domain RPE_RS16930 0799eded84c5980fe562937d76cfc572 919 SUPERFAMILY SSF56712 1 572 3.4E-184 T 23-04-2016 IPR023405 DNA topoisomerase, type IA, core domain RPE_RS16930 0799eded84c5980fe562937d76cfc572 919 Gene3D G3DSA:1.10.460.10 136 187 5.6E-55 T 23-04-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 RPE_RS16930 0799eded84c5980fe562937d76cfc572 919 Gene3D G3DSA:1.10.460.10 461 573 5.6E-55 T 23-04-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 RPE_RS16930 0799eded84c5980fe562937d76cfc572 919 PANTHER PTHR11390 1 672 0.0 T 23-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 RPE_RS16930 0799eded84c5980fe562937d76cfc572 919 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 285 307 - T 23-04-2016 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 RPE_RS16930 0799eded84c5980fe562937d76cfc572 919 SMART SM00436 106 194 7.7E-43 T 23-04-2016 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 RPE_RS16930 0799eded84c5980fe562937d76cfc572 919 SMART SM00493 1 101 3.0E-28 T 23-04-2016 IPR006171 Toprim domain RPE_RS16930 0799eded84c5980fe562937d76cfc572 919 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 603 638 6.9E-16 T 23-04-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 RPE_RS16930 0799eded84c5980fe562937d76cfc572 919 SUPERFAMILY SSF57783 603 639 3.91E-9 T 23-04-2016 RPE_RS16930 0799eded84c5980fe562937d76cfc572 919 SMART SM00437 248 521 6.6E-111 T 23-04-2016 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 RPE_RS16930 0799eded84c5980fe562937d76cfc572 919 Hamap MF_00952 DNA topoisomerase 1 [topA]. 1 729 52.549 T 23-04-2016 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 RPE_RS16930 0799eded84c5980fe562937d76cfc572 919 Pfam PF01751 Toprim domain 3 115 1.4E-26 T 23-04-2016 IPR006171 Toprim domain RPE_RS12830 5c6d439e56308d4735c360493f3d2a73 280 Pfam PF01148 Cytidylyltransferase family 20 263 6.3E-54 T 23-04-2016 RPE_RS12830 5c6d439e56308d4735c360493f3d2a73 280 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 225 251 - T 23-04-2016 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00557 RPE_RS12830 5c6d439e56308d4735c360493f3d2a73 280 PANTHER PTHR13773 15 263 4.0E-53 T 23-04-2016 RPE_RS22765 6e8cb166564a245effd661c684b5cb48 204 Gene3D G3DSA:3.30.1150.10 93 184 3.5E-5 T 23-04-2016 RPE_RS22765 6e8cb166564a245effd661c684b5cb48 204 SUPERFAMILY SSF74653 91 184 1.37E-10 T 23-04-2016 RPE_RS22765 6e8cb166564a245effd661c684b5cb48 204 SMART SM00965 41 92 2.1E-7 T 23-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 RPE_RS12900 94b67eac1d1cc7dc8da0678c4cfac5c7 403 Gene3D G3DSA:3.90.105.10 128 157 3.4E-13 T 23-04-2016 RPE_RS12900 94b67eac1d1cc7dc8da0678c4cfac5c7 403 SUPERFAMILY SSF63882 3 172 4.19E-49 T 23-04-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 RPE_RS12900 94b67eac1d1cc7dc8da0678c4cfac5c7 403 PANTHER PTHR10192 1 385 3.6E-117 T 23-04-2016 RPE_RS12900 94b67eac1d1cc7dc8da0678c4cfac5c7 403 Gene3D G3DSA:2.170.190.11 46 127 3.6E-27 T 23-04-2016 RPE_RS12900 94b67eac1d1cc7dc8da0678c4cfac5c7 403 Pfam PF00994 Probable molybdopterin binding domain 178 315 2.6E-20 T 23-04-2016 IPR001453 MoaB/Mog domain RPE_RS12900 94b67eac1d1cc7dc8da0678c4cfac5c7 403 Gene3D G3DSA:3.40.980.10 158 329 5.9E-52 T 23-04-2016 IPR001453 MoaB/Mog domain RPE_RS12900 94b67eac1d1cc7dc8da0678c4cfac5c7 403 SUPERFAMILY SSF63867 329 401 2.75E-13 T 23-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 RPE_RS12900 94b67eac1d1cc7dc8da0678c4cfac5c7 403 SMART SM00852 177 316 1.2E-34 T 23-04-2016 IPR001453 MoaB/Mog domain RPE_RS12900 94b67eac1d1cc7dc8da0678c4cfac5c7 403 Gene3D G3DSA:2.40.340.10 330 398 9.0E-11 T 23-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 RPE_RS12900 94b67eac1d1cc7dc8da0678c4cfac5c7 403 SUPERFAMILY SSF53218 175 320 4.19E-37 T 23-04-2016 IPR001453 MoaB/Mog domain RPE_RS12900 94b67eac1d1cc7dc8da0678c4cfac5c7 403 Pfam PF03453 MoeA N-terminal region (domain I and II) 5 163 3.4E-30 T 23-04-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 RPE_RS12900 94b67eac1d1cc7dc8da0678c4cfac5c7 403 Pfam PF03454 MoeA C-terminal region (domain IV) 330 400 8.4E-12 T 23-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 RPE_RS11555 6fc8f39de0c6bb4a51c675bdc86e3c30 236 Gene3D G3DSA:3.40.30.10 1 83 1.5E-26 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS11555 6fc8f39de0c6bb4a51c675bdc86e3c30 236 PANTHER PTHR11260 1 222 1.4E-70 T 23-04-2016 RPE_RS11555 6fc8f39de0c6bb4a51c675bdc86e3c30 236 PANTHER PTHR11260:SF238 1 222 1.4E-70 T 23-04-2016 RPE_RS11555 6fc8f39de0c6bb4a51c675bdc86e3c30 236 SUPERFAMILY SSF52833 1 84 5.49E-21 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS11555 6fc8f39de0c6bb4a51c675bdc86e3c30 236 Gene3D G3DSA:1.20.1050.10 84 199 1.5E-49 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RPE_RS11555 6fc8f39de0c6bb4a51c675bdc86e3c30 236 SUPERFAMILY SSF47616 78 206 3.62E-36 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RPE_RS11555 6fc8f39de0c6bb4a51c675bdc86e3c30 236 Pfam PF00043 Glutathione S-transferase, C-terminal domain 113 196 8.5E-9 T 23-04-2016 IPR004046 Glutathione S-transferase, C-terminal RPE_RS11555 6fc8f39de0c6bb4a51c675bdc86e3c30 236 Pfam PF02798 Glutathione S-transferase, N-terminal domain 6 81 1.2E-13 T 23-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RPE_RS02940 a4b5e755b5ad3902dd6405b5428626fb 328 PANTHER PTHR11908 11 123 2.8E-48 T 23-04-2016 RPE_RS02940 a4b5e755b5ad3902dd6405b5428626fb 328 PANTHER PTHR11908 161 325 2.8E-48 T 23-04-2016 RPE_RS02940 a4b5e755b5ad3902dd6405b5428626fb 328 SUPERFAMILY SSF55447 219 321 1.7E-20 T 23-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal RPE_RS02940 a4b5e755b5ad3902dd6405b5428626fb 328 SMART SM01092 220 321 6.3E-13 T 23-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal RPE_RS02940 a4b5e755b5ad3902dd6405b5428626fb 328 Gene3D G3DSA:3.30.390.50 219 322 4.4E-23 T 23-04-2016 RPE_RS02940 a4b5e755b5ad3902dd6405b5428626fb 328 Gene3D G3DSA:3.30.465.10 156 215 2.1E-30 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RPE_RS02940 a4b5e755b5ad3902dd6405b5428626fb 328 Gene3D G3DSA:3.30.465.10 60 117 2.1E-30 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RPE_RS02940 a4b5e755b5ad3902dd6405b5428626fb 328 SUPERFAMILY SSF56176 7 215 1.31E-58 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RPE_RS02940 a4b5e755b5ad3902dd6405b5428626fb 328 Gene3D G3DSA:3.30.43.10 8 54 1.4E-13 T 23-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 RPE_RS02940 a4b5e755b5ad3902dd6405b5428626fb 328 TIGRFAM TIGR03195 4hydrxCoA_B: 4-hydroxybenzoyl-CoA reductase, beta subunit 4 323 2.1E-164 T 23-04-2016 IPR017608 4-hydroxybenzoyl-CoA reductase, beta subunit KEGG: 00362+1.3.7.9|KEGG: 00627+1.3.7.9|MetaCyc: PWY-6080|MetaCyc: PWY-7046 RPE_RS02940 a4b5e755b5ad3902dd6405b5428626fb 328 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 221 320 4.1E-9 T 23-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal RPE_RS02940 a4b5e755b5ad3902dd6405b5428626fb 328 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 8 215 7.7E-49 T 23-04-2016 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 RPE_RS05475 8c88000ad5821eabe043094db05867e8 250 SUPERFAMILY SSF56300 14 240 8.59E-42 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RPE_RS05475 8c88000ad5821eabe043094db05867e8 250 PANTHER PTHR24032 5 239 3.3E-31 T 23-04-2016 RPE_RS05475 8c88000ad5821eabe043094db05867e8 250 ProSitePatterns PS00125 Serine/threonine specific protein phosphatases signature. 87 92 - T 23-04-2016 IPR006186 Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase GO:0016787 KEGG: 04660+3.1.3.16 RPE_RS05475 8c88000ad5821eabe043094db05867e8 250 Gene3D G3DSA:3.60.21.10 11 242 1.5E-44 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RPE_RS05475 8c88000ad5821eabe043094db05867e8 250 PANTHER PTHR24032:SF31 5 239 3.3E-31 T 23-04-2016 RPE_RS05475 8c88000ad5821eabe043094db05867e8 250 Pfam PF00149 Calcineurin-like phosphoesterase 20 218 6.4E-12 T 23-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 RPE_RS10225 a04288902a8502a8ab09edef60e8ec2b 549 Pfam PF12848 ABC transporter 224 299 2.8E-12 T 23-04-2016 IPR032781 ABC-transporter extension domain RPE_RS10225 a04288902a8502a8ab09edef60e8ec2b 549 PANTHER PTHR19211 1 549 0.0 T 23-04-2016 RPE_RS10225 a04288902a8502a8ab09edef60e8ec2b 549 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS10225 a04288902a8502a8ab09edef60e8ec2b 549 SMART SM00382 342 518 3.9E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS10225 a04288902a8502a8ab09edef60e8ec2b 549 SMART SM00382 31 230 5.0E-6 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS10225 a04288902a8502a8ab09edef60e8ec2b 549 Gene3D G3DSA:3.40.50.300 316 528 1.7E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10225 a04288902a8502a8ab09edef60e8ec2b 549 SUPERFAMILY SSF52540 296 516 2.71E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10225 a04288902a8502a8ab09edef60e8ec2b 549 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 4 547 4.8E-287 T 23-04-2016 IPR022374 ABC transporter, ATP-binding protein, ChvD RPE_RS10225 a04288902a8502a8ab09edef60e8ec2b 549 Pfam PF00005 ABC transporter 334 467 1.8E-24 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS10225 a04288902a8502a8ab09edef60e8ec2b 549 Pfam PF00005 ABC transporter 22 185 1.0E-27 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS10225 a04288902a8502a8ab09edef60e8ec2b 549 SUPERFAMILY SSF52540 9 238 2.71E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10225 a04288902a8502a8ab09edef60e8ec2b 549 PANTHER PTHR19211:SF7 1 549 0.0 T 23-04-2016 RPE_RS10225 a04288902a8502a8ab09edef60e8ec2b 549 Gene3D G3DSA:3.40.50.300 9 282 2.6E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS07570 1307246b32218018b8d166d0402e7767 195 PANTHER PTHR30390 1 185 9.0E-42 T 23-04-2016 RPE_RS07570 1307246b32218018b8d166d0402e7767 195 Gene3D G3DSA:3.40.50.10490 18 184 1.1E-30 T 23-04-2016 RPE_RS07570 1307246b32218018b8d166d0402e7767 195 Pfam PF13580 SIS domain 8 143 1.8E-17 T 23-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 RPE_RS07570 1307246b32218018b8d166d0402e7767 195 SUPERFAMILY SSF53697 18 185 6.01E-28 T 23-04-2016 RPE_RS24120 d8c94e30c155ef80fad1caa7b9b63bca 218 PANTHER PTHR12192:SF9 38 209 1.6E-78 T 23-04-2016 RPE_RS24120 d8c94e30c155ef80fad1caa7b9b63bca 218 SUPERFAMILY SSF110857 44 158 9.81E-16 T 23-04-2016 IPR013024 Butirosin biosynthesis, BtrG-like RPE_RS24120 d8c94e30c155ef80fad1caa7b9b63bca 218 PANTHER PTHR12192 38 209 1.6E-78 T 23-04-2016 IPR006840 ChaC-like protein RPE_RS24120 d8c94e30c155ef80fad1caa7b9b63bca 218 Gene3D G3DSA:3.10.490.10 39 208 8.7E-26 T 23-04-2016 IPR013024 Butirosin biosynthesis, BtrG-like RPE_RS24120 d8c94e30c155ef80fad1caa7b9b63bca 218 Pfam PF04752 ChaC-like protein 44 213 7.3E-48 T 23-04-2016 IPR006840 ChaC-like protein RPE_RS09815 ae4c0f63e76152b9328418269f12623e 324 PANTHER PTHR21708:SF29 1 320 1.5E-159 T 23-04-2016 RPE_RS09815 ae4c0f63e76152b9328418269f12623e 324 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 104 4.9E-23 T 23-04-2016 IPR013332 Ketopantoate reductase, N-terminal domain GO:0008677|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 RPE_RS09815 ae4c0f63e76152b9328418269f12623e 324 PANTHER PTHR21708 1 320 1.5E-159 T 23-04-2016 RPE_RS09815 ae4c0f63e76152b9328418269f12623e 324 Gene3D G3DSA:1.10.1040.10 197 316 1.3E-28 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RPE_RS09815 ae4c0f63e76152b9328418269f12623e 324 Gene3D G3DSA:3.40.50.720 1 193 8.8E-52 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS09815 ae4c0f63e76152b9328418269f12623e 324 SUPERFAMILY SSF51735 1 105 4.96E-16 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS09815 ae4c0f63e76152b9328418269f12623e 324 SUPERFAMILY SSF51735 139 202 4.96E-16 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS09815 ae4c0f63e76152b9328418269f12623e 324 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 197 315 1.3E-25 T 23-04-2016 IPR013752 Ketopantoate reductase, C-terminal domain GO:0016491|GO:0050661|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 RPE_RS09815 ae4c0f63e76152b9328418269f12623e 324 SUPERFAMILY SSF48179 197 314 2.89E-28 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RPE_RS02780 eafb029d4875d551b5790ac0656117d5 89 PRINTS PR00063 Ribosomal protein L27 signature 54 78 1.9E-33 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS02780 eafb029d4875d551b5790ac0656117d5 89 PRINTS PR00063 Ribosomal protein L27 signature 29 53 1.9E-33 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS02780 eafb029d4875d551b5790ac0656117d5 89 PRINTS PR00063 Ribosomal protein L27 signature 4 28 1.9E-33 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS02780 eafb029d4875d551b5790ac0656117d5 89 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 23-04-2016 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS02780 eafb029d4875d551b5790ac0656117d5 89 Gene3D G3DSA:2.40.50.100 20 83 5.4E-31 T 23-04-2016 RPE_RS02780 eafb029d4875d551b5790ac0656117d5 89 Pfam PF01016 Ribosomal L27 protein 2 81 2.6E-38 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS02780 eafb029d4875d551b5790ac0656117d5 89 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 81 6.5E-35 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS02780 eafb029d4875d551b5790ac0656117d5 89 PANTHER PTHR15893 1 84 8.6E-49 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS02780 eafb029d4875d551b5790ac0656117d5 89 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 84 26.922 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS02780 eafb029d4875d551b5790ac0656117d5 89 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 84 5.0E-25 T 23-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS02780 eafb029d4875d551b5790ac0656117d5 89 SUPERFAMILY SSF110324 2 82 1.44E-34 T 23-04-2016 RPE_RS14975 756b879f3a56992d359143bd04487097 470 Gene3D G3DSA:1.25.40.10 290 436 4.6E-18 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS14975 756b879f3a56992d359143bd04487097 470 Gene3D G3DSA:3.30.2010.10 47 126 9.4E-16 T 23-04-2016 RPE_RS14975 756b879f3a56992d359143bd04487097 470 PANTHER PTHR22726:SF10 43 147 3.3E-55 T 23-04-2016 RPE_RS14975 756b879f3a56992d359143bd04487097 470 PANTHER PTHR22726:SF10 163 335 3.3E-55 T 23-04-2016 RPE_RS14975 756b879f3a56992d359143bd04487097 470 PANTHER PTHR22726 43 147 3.3E-55 T 23-04-2016 RPE_RS14975 756b879f3a56992d359143bd04487097 470 PANTHER PTHR22726 163 335 3.3E-55 T 23-04-2016 RPE_RS14975 756b879f3a56992d359143bd04487097 470 SUPERFAMILY SSF48452 295 432 1.49E-15 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS14975 756b879f3a56992d359143bd04487097 470 Pfam PF01435 Peptidase family M48 55 246 2.0E-28 T 23-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RPE_RS22910 e61a4d893bfb628f6a6c44fabe094c7b 535 PANTHER PTHR24095 2 532 8.0E-201 T 23-04-2016 RPE_RS22910 e61a4d893bfb628f6a6c44fabe094c7b 535 PANTHER PTHR24095:SF117 2 532 8.0E-201 T 23-04-2016 RPE_RS22910 e61a4d893bfb628f6a6c44fabe094c7b 535 SUPERFAMILY SSF56801 5 534 3.14E-146 T 23-04-2016 RPE_RS22910 e61a4d893bfb628f6a6c44fabe094c7b 535 Pfam PF13193 AMP-binding enzyme C-terminal domain 447 525 1.2E-19 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RPE_RS22910 e61a4d893bfb628f6a6c44fabe094c7b 535 Gene3D G3DSA:3.30.300.30 433 534 9.9E-30 T 23-04-2016 RPE_RS22910 e61a4d893bfb628f6a6c44fabe094c7b 535 ProSitePatterns PS00455 Putative AMP-binding domain signature. 189 200 - T 23-04-2016 IPR020845 AMP-binding, conserved site RPE_RS22910 e61a4d893bfb628f6a6c44fabe094c7b 535 Gene3D G3DSA:2.30.38.10 353 428 1.2E-21 T 23-04-2016 RPE_RS22910 e61a4d893bfb628f6a6c44fabe094c7b 535 Gene3D G3DSA:3.40.50.980 195 342 4.3E-29 T 23-04-2016 RPE_RS22910 e61a4d893bfb628f6a6c44fabe094c7b 535 Pfam PF00501 AMP-binding enzyme 38 437 1.6E-85 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS22910 e61a4d893bfb628f6a6c44fabe094c7b 535 Gene3D G3DSA:3.40.50.980 39 194 7.4E-36 T 23-04-2016 RPE_RS20195 b66f8bc8ea3af9f88dee41097610bbe7 316 Pfam PF08401 Domain of unknown function (DUF1738) 17 139 4.3E-38 T 23-04-2016 IPR013610 Domain of unknown function DUF1738 RPE_RS20195 b66f8bc8ea3af9f88dee41097610bbe7 316 PIRSF PIRSF037112 3 312 3.1E-107 T 23-04-2016 IPR017113 Antirestriction, ArdC RPE_RS21805 53b632495d11084f95fe9d466bfda671 323 SUPERFAMILY SSF50494 25 224 7.62E-27 T 23-04-2016 IPR009003 Peptidase S1, PA clan RPE_RS21805 53b632495d11084f95fe9d466bfda671 323 Gene3D G3DSA:2.30.42.10 240 308 4.7E-15 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS21805 53b632495d11084f95fe9d466bfda671 323 PANTHER PTHR22939 1 308 1.6E-78 T 23-04-2016 RPE_RS21805 53b632495d11084f95fe9d466bfda671 323 SUPERFAMILY SSF50156 201 311 1.84E-15 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS21805 53b632495d11084f95fe9d466bfda671 323 Gene3D G3DSA:2.40.10.10 124 233 6.7E-11 T 23-04-2016 RPE_RS21805 53b632495d11084f95fe9d466bfda671 323 PANTHER PTHR22939:SF98 1 308 1.6E-78 T 23-04-2016 RPE_RS21805 53b632495d11084f95fe9d466bfda671 323 SMART SM00228 230 301 3.4E-6 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS21805 53b632495d11084f95fe9d466bfda671 323 PRINTS PR00834 HtrA/DegQ protease family signature 62 74 1.6E-9 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RPE_RS21805 53b632495d11084f95fe9d466bfda671 323 PRINTS PR00834 HtrA/DegQ protease family signature 83 103 1.6E-9 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RPE_RS21805 53b632495d11084f95fe9d466bfda671 323 PRINTS PR00834 HtrA/DegQ protease family signature 179 196 1.6E-9 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RPE_RS21805 53b632495d11084f95fe9d466bfda671 323 PRINTS PR00834 HtrA/DegQ protease family signature 258 270 1.6E-9 T 23-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RPE_RS21805 53b632495d11084f95fe9d466bfda671 323 Gene3D G3DSA:2.40.10.10 51 123 3.8E-9 T 23-04-2016 RPE_RS21805 53b632495d11084f95fe9d466bfda671 323 Pfam PF13180 PDZ domain 230 307 7.2E-13 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS21805 53b632495d11084f95fe9d466bfda671 323 Pfam PF13365 Trypsin-like peptidase domain 54 186 5.8E-11 T 23-04-2016 RPE_RS12725 8abf7a52071415a05825504af0d64b2a 478 PANTHER PTHR22773:SF41 2 477 2.3E-176 T 23-04-2016 RPE_RS12725 8abf7a52071415a05825504af0d64b2a 478 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 8 467 18.446 T 23-04-2016 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 RPE_RS12725 8abf7a52071415a05825504af0d64b2a 478 Pfam PF00361 Proton-conducting membrane transporter 126 418 1.6E-84 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RPE_RS12725 8abf7a52071415a05825504af0d64b2a 478 PANTHER PTHR22773 2 477 2.3E-176 T 23-04-2016 RPE_RS12725 8abf7a52071415a05825504af0d64b2a 478 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 11 466 6.8E-145 T 23-04-2016 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 RPE_RS05845 9f878f17940ca144ff889c1d1de3053a 344 SUPERFAMILY SSF48029 17 123 6.8E-16 T 23-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical RPE_RS05845 9f878f17940ca144ff889c1d1de3053a 344 PANTHER PTHR30534 3 342 1.4E-53 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RPE_RS05845 9f878f17940ca144ff889c1d1de3053a 344 Pfam PF14841 FliG middle domain 128 196 4.9E-21 T 23-04-2016 IPR032779 Flagellar motor switch protein FliG, middle domain RPE_RS05845 9f878f17940ca144ff889c1d1de3053a 344 SUPERFAMILY SSF48029 127 334 3.92E-51 T 23-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical RPE_RS05845 9f878f17940ca144ff889c1d1de3053a 344 PANTHER PTHR30534:SF0 3 342 1.4E-53 T 23-04-2016 RPE_RS05845 9f878f17940ca144ff889c1d1de3053a 344 Pfam PF14842 FliG N-terminal domain 16 116 1.2E-19 T 23-04-2016 IPR028263 Flagellar motor switch protein FliG, N-terminal domain RPE_RS05845 9f878f17940ca144ff889c1d1de3053a 344 Gene3D G3DSA:1.10.220.30 208 340 2.9E-25 T 23-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical RPE_RS05845 9f878f17940ca144ff889c1d1de3053a 344 Gene3D G3DSA:1.10.220.30 114 196 2.8E-20 T 23-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical RPE_RS05845 9f878f17940ca144ff889c1d1de3053a 344 Gene3D G3DSA:1.10.220.30 19 78 1.9E-9 T 23-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical RPE_RS05845 9f878f17940ca144ff889c1d1de3053a 344 Pfam PF01706 FliG C-terminal domain 227 333 5.3E-24 T 23-04-2016 IPR023087 Flagellar motor switch protein FliG, C-terminal RPE_RS05845 9f878f17940ca144ff889c1d1de3053a 344 PRINTS PR00954 Flagellar motor switch protein FliG signature 257 277 3.1E-38 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RPE_RS05845 9f878f17940ca144ff889c1d1de3053a 344 PRINTS PR00954 Flagellar motor switch protein FliG signature 281 307 3.1E-38 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RPE_RS05845 9f878f17940ca144ff889c1d1de3053a 344 PRINTS PR00954 Flagellar motor switch protein FliG signature 235 255 3.1E-38 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RPE_RS05845 9f878f17940ca144ff889c1d1de3053a 344 PRINTS PR00954 Flagellar motor switch protein FliG signature 124 147 3.1E-38 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RPE_RS05845 9f878f17940ca144ff889c1d1de3053a 344 PRINTS PR00954 Flagellar motor switch protein FliG signature 45 71 3.1E-38 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RPE_RS05845 9f878f17940ca144ff889c1d1de3053a 344 PRINTS PR00954 Flagellar motor switch protein FliG signature 16 32 3.1E-38 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RPE_RS05845 9f878f17940ca144ff889c1d1de3053a 344 PRINTS PR00954 Flagellar motor switch protein FliG signature 204 229 3.1E-38 T 23-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RPE_RS04180 8c4716d2d3c274861ee4d1086d9966da 632 SUPERFAMILY SSF48695 353 625 2.75E-43 T 23-04-2016 IPR011031 Multihaem cytochrome RPE_RS04180 8c4716d2d3c274861ee4d1086d9966da 632 TIGRFAM TIGR01905 paired_CXXCH_1: doubled CXXCH domain 506 547 1.7E-11 T 23-04-2016 IPR010177 Doubled CXXCH motif UniPathway: UPA00045 RPE_RS04180 8c4716d2d3c274861ee4d1086d9966da 632 TIGRFAM TIGR01905 paired_CXXCH_1: doubled CXXCH domain 555 590 3.6E-8 T 23-04-2016 IPR010177 Doubled CXXCH motif UniPathway: UPA00045 RPE_RS04180 8c4716d2d3c274861ee4d1086d9966da 632 PANTHER PTHR35038 432 627 7.8E-41 T 23-04-2016 RPE_RS04180 8c4716d2d3c274861ee4d1086d9966da 632 PANTHER PTHR35038:SF3 432 627 7.8E-41 T 23-04-2016 RPE_RS04180 8c4716d2d3c274861ee4d1086d9966da 632 TIGRFAM TIGR03508 decahem_SO: decaheme c-type cytochrome, DmsE family 362 626 2.7E-75 T 23-04-2016 IPR020015 Decaheme cytochrome, c-type, DmsE RPE_RS04180 8c4716d2d3c274861ee4d1086d9966da 632 Gene3D G3DSA:3.90.10.10 435 513 4.5E-19 T 23-04-2016 RPE_RS04180 8c4716d2d3c274861ee4d1086d9966da 632 Gene3D G3DSA:3.90.10.10 363 403 4.5E-19 T 23-04-2016 RPE_RS04180 8c4716d2d3c274861ee4d1086d9966da 632 Gene3D G3DSA:3.90.10.10 552 618 1.2E-7 T 23-04-2016 RPE_RS04180 8c4716d2d3c274861ee4d1086d9966da 632 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 506 548 1.1E-14 T 23-04-2016 IPR010177 Doubled CXXCH motif UniPathway: UPA00045 RPE_RS04180 8c4716d2d3c274861ee4d1086d9966da 632 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 555 590 2.6E-9 T 23-04-2016 IPR010177 Doubled CXXCH motif UniPathway: UPA00045 RPE_RS04180 8c4716d2d3c274861ee4d1086d9966da 632 Gene3D G3DSA:3.90.10.10 514 551 9.1E-6 T 23-04-2016 RPE_RS05910 9108b8443498b33ce24b36ae3a53d9fd 544 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 30 414 1.6E-52 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RPE_RS05910 9108b8443498b33ce24b36ae3a53d9fd 544 Pfam PF08345 Flagellar M-ring protein C-terminal 249 413 1.1E-28 T 23-04-2016 IPR013556 Flagellar M-ring C-terminal RPE_RS05910 9108b8443498b33ce24b36ae3a53d9fd 544 PIRSF PIRSF004862 2 543 3.6E-117 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RPE_RS05910 9108b8443498b33ce24b36ae3a53d9fd 544 Pfam PF01514 Secretory protein of YscJ/FliF family 30 216 1.8E-55 T 23-04-2016 IPR006182 Secretory protein YscJ/FliF RPE_RS05910 9108b8443498b33ce24b36ae3a53d9fd 544 PANTHER PTHR30046 1 543 5.9E-135 T 23-04-2016 RPE_RS05910 9108b8443498b33ce24b36ae3a53d9fd 544 PRINTS PR01009 Flagellar M-ring protein signature 152 166 3.5E-31 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RPE_RS05910 9108b8443498b33ce24b36ae3a53d9fd 544 PRINTS PR01009 Flagellar M-ring protein signature 262 280 3.5E-31 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RPE_RS05910 9108b8443498b33ce24b36ae3a53d9fd 544 PRINTS PR01009 Flagellar M-ring protein signature 120 138 3.5E-31 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RPE_RS05910 9108b8443498b33ce24b36ae3a53d9fd 544 PRINTS PR01009 Flagellar M-ring protein signature 337 361 3.5E-31 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RPE_RS05910 9108b8443498b33ce24b36ae3a53d9fd 544 PRINTS PR01009 Flagellar M-ring protein signature 193 211 3.5E-31 T 23-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RPE_RS05910 9108b8443498b33ce24b36ae3a53d9fd 544 PANTHER PTHR30046:SF0 1 543 5.9E-135 T 23-04-2016 RPE_RS12275 e03032f983913d7fb38e074829af8c67 437 Gene3D G3DSA:3.40.50.300 34 131 0.001 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12275 e03032f983913d7fb38e074829af8c67 437 Gene3D G3DSA:3.40.50.300 203 293 0.001 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12275 e03032f983913d7fb38e074829af8c67 437 SUPERFAMILY SSF52540 239 342 2.32E-7 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12275 e03032f983913d7fb38e074829af8c67 437 SUPERFAMILY SSF52540 34 122 2.32E-7 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12275 e03032f983913d7fb38e074829af8c67 437 Pfam PF10923 P-loop Domain of unknown function (DUF2791) 7 408 4.4E-160 T 23-04-2016 IPR021228 Protein of unknown function DUF2791 RPE_RS02000 c98f36778ba49f161caa88621a89b32b 412 PANTHER PTHR11751 25 409 9.4E-120 T 23-04-2016 RPE_RS02000 c98f36778ba49f161caa88621a89b32b 412 Pfam PF00155 Aminotransferase class I and II 42 401 1.7E-38 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RPE_RS02000 c98f36778ba49f161caa88621a89b32b 412 PANTHER PTHR11751:SF354 25 409 9.4E-120 T 23-04-2016 RPE_RS02000 c98f36778ba49f161caa88621a89b32b 412 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 251 264 - T 23-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 RPE_RS02000 c98f36778ba49f161caa88621a89b32b 412 Gene3D G3DSA:3.40.640.10 55 270 5.0E-51 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS02000 c98f36778ba49f161caa88621a89b32b 412 Gene3D G3DSA:3.90.1150.10 271 408 4.9E-20 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS02000 c98f36778ba49f161caa88621a89b32b 412 SUPERFAMILY SSF53383 23 408 4.03E-78 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS21335 0475676a6d968d6358ef96ebb4759b2b 233 SMART SM00448 1 112 1.0E-38 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS21335 0475676a6d968d6358ef96ebb4759b2b 233 SUPERFAMILY SSF52172 1 174 1.85E-38 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS21335 0475676a6d968d6358ef96ebb4759b2b 233 Gene3D G3DSA:1.10.10.10 123 224 4.7E-27 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS21335 0475676a6d968d6358ef96ebb4759b2b 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 221 5.1E-20 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS21335 0475676a6d968d6358ef96ebb4759b2b 233 SMART SM00862 145 221 2.0E-19 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS21335 0475676a6d968d6358ef96ebb4759b2b 233 Gene3D G3DSA:3.40.50.2300 1 122 3.2E-35 T 23-04-2016 RPE_RS21335 0475676a6d968d6358ef96ebb4759b2b 233 PANTHER PTHR26402 1 231 4.0E-125 T 23-04-2016 RPE_RS21335 0475676a6d968d6358ef96ebb4759b2b 233 PANTHER PTHR26402:SF553 1 231 4.0E-125 T 23-04-2016 RPE_RS21335 0475676a6d968d6358ef96ebb4759b2b 233 Pfam PF00072 Response regulator receiver domain 3 112 8.8E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS21690 84d9ae6944466be36e56432b6d291d82 542 SUPERFAMILY SSF101898 342 540 1.91E-26 T 23-04-2016 RPE_RS21690 84d9ae6944466be36e56432b6d291d82 542 Gene3D G3DSA:2.120.10.30 86 309 3.2E-40 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like RPE_RS21690 84d9ae6944466be36e56432b6d291d82 542 SUPERFAMILY SSF63829 77 308 2.75E-32 T 23-04-2016 RPE_RS21690 84d9ae6944466be36e56432b6d291d82 542 Gene3D G3DSA:2.120.10.30 39 85 4.7E-4 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like RPE_RS21690 84d9ae6944466be36e56432b6d291d82 542 Gene3D G3DSA:2.120.10.30 343 541 6.7E-24 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like RPE_RS21690 84d9ae6944466be36e56432b6d291d82 542 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 177 278 2.7E-6 T 23-04-2016 IPR013658 SMP-30/Gluconolactonase/LRE-like region RPE_RS15825 dbfb1f214eea25d9a8fe575424310cad 364 PANTHER PTHR30472:SF3 11 363 1.3E-138 T 23-04-2016 RPE_RS15825 dbfb1f214eea25d9a8fe575424310cad 364 Gene3D G3DSA:1.10.3470.10 23 359 1.5E-102 T 23-04-2016 IPR029022 ABC transporter, BtuC-like RPE_RS15825 dbfb1f214eea25d9a8fe575424310cad 364 PANTHER PTHR30472 11 363 1.3E-138 T 23-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 RPE_RS15825 dbfb1f214eea25d9a8fe575424310cad 364 SUPERFAMILY SSF81345 19 357 9.29E-80 T 23-04-2016 IPR029022 ABC transporter, BtuC-like RPE_RS15825 dbfb1f214eea25d9a8fe575424310cad 364 Pfam PF01032 FecCD transport family 34 357 1.4E-88 T 23-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 RPE_RS19550 d7e8fe9045af32823f4329edad046eb3 110 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 1 104 5.3E-23 T 23-04-2016 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 RPE_RS19550 d7e8fe9045af32823f4329edad046eb3 110 Pfam PF13466 STAS domain 14 93 1.9E-14 T 23-04-2016 IPR002645 STAS domain RPE_RS19550 d7e8fe9045af32823f4329edad046eb3 110 Gene3D G3DSA:3.30.750.24 1 108 5.5E-29 T 23-04-2016 IPR002645 STAS domain RPE_RS19550 d7e8fe9045af32823f4329edad046eb3 110 SUPERFAMILY SSF52091 1 107 3.34E-25 T 23-04-2016 IPR002645 STAS domain RPE_RS19550 d7e8fe9045af32823f4329edad046eb3 110 PANTHER PTHR33495 1 110 1.6E-21 T 23-04-2016 RPE_RS23490 d07ad79de45582ad77266d97552eb443 336 Pfam PF13432 Tetratricopeptide repeat 257 319 1.4E-6 T 23-04-2016 RPE_RS23490 d07ad79de45582ad77266d97552eb443 336 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 212 326 3.7E-36 T 23-04-2016 IPR014162 Tol-Pal system, YbgF RPE_RS23490 d07ad79de45582ad77266d97552eb443 336 SUPERFAMILY SSF48452 212 318 6.12E-10 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS23490 d07ad79de45582ad77266d97552eb443 336 Gene3D G3DSA:1.25.40.10 203 318 2.5E-10 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS06275 9812a05270180862122fdfb5cc995d3a 370 Gene3D G3DSA:1.10.645.10 213 362 4.1E-22 T 23-04-2016 IPR029014 NiFe hydrogenase-like RPE_RS06275 9812a05270180862122fdfb5cc995d3a 370 Gene3D G3DSA:1.10.645.10 10 82 1.4E-4 T 23-04-2016 IPR029014 NiFe hydrogenase-like RPE_RS06275 9812a05270180862122fdfb5cc995d3a 370 PANTHER PTHR11993:SF26 216 370 1.6E-16 T 23-04-2016 RPE_RS06275 9812a05270180862122fdfb5cc995d3a 370 Pfam PF00374 Nickel-dependent hydrogenase 285 362 3.9E-8 T 23-04-2016 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 RPE_RS06275 9812a05270180862122fdfb5cc995d3a 370 SUPERFAMILY SSF56762 11 362 1.44E-35 T 23-04-2016 IPR029014 NiFe hydrogenase-like RPE_RS06275 9812a05270180862122fdfb5cc995d3a 370 PANTHER PTHR11993 216 370 1.6E-16 T 23-04-2016 RPE_RS06865 b8d37de3f694c118f63a63bcca46ee32 306 PRINTS PR00819 CbxX/CfqX superfamily signature 179 196 8.8E-75 T 23-04-2016 IPR000641 CbxX/CfqX GO:0005524 RPE_RS06865 b8d37de3f694c118f63a63bcca46ee32 306 PRINTS PR00819 CbxX/CfqX superfamily signature 253 265 8.8E-75 T 23-04-2016 IPR000641 CbxX/CfqX GO:0005524 RPE_RS06865 b8d37de3f694c118f63a63bcca46ee32 306 PRINTS PR00819 CbxX/CfqX superfamily signature 158 170 8.8E-75 T 23-04-2016 IPR000641 CbxX/CfqX GO:0005524 RPE_RS06865 b8d37de3f694c118f63a63bcca46ee32 306 PRINTS PR00819 CbxX/CfqX superfamily signature 113 127 8.8E-75 T 23-04-2016 IPR000641 CbxX/CfqX GO:0005524 RPE_RS06865 b8d37de3f694c118f63a63bcca46ee32 306 PRINTS PR00819 CbxX/CfqX superfamily signature 196 215 8.8E-75 T 23-04-2016 IPR000641 CbxX/CfqX GO:0005524 RPE_RS06865 b8d37de3f694c118f63a63bcca46ee32 306 PRINTS PR00819 CbxX/CfqX superfamily signature 35 49 8.8E-75 T 23-04-2016 IPR000641 CbxX/CfqX GO:0005524 RPE_RS06865 b8d37de3f694c118f63a63bcca46ee32 306 PRINTS PR00819 CbxX/CfqX superfamily signature 127 146 8.8E-75 T 23-04-2016 IPR000641 CbxX/CfqX GO:0005524 RPE_RS06865 b8d37de3f694c118f63a63bcca46ee32 306 PRINTS PR00819 CbxX/CfqX superfamily signature 75 90 8.8E-75 T 23-04-2016 IPR000641 CbxX/CfqX GO:0005524 RPE_RS06865 b8d37de3f694c118f63a63bcca46ee32 306 TIGRFAM TIGR02880 cbbX_cfxQ: CbbX protein 16 299 2.1E-164 T 23-04-2016 IPR000470 CbxX/CfqX, monofunctional GO:0005524 RPE_RS06865 b8d37de3f694c118f63a63bcca46ee32 306 SMART SM00382 72 211 2.1E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS06865 b8d37de3f694c118f63a63bcca46ee32 306 SUPERFAMILY SSF52540 31 286 3.98E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS06865 b8d37de3f694c118f63a63bcca46ee32 306 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 77 208 5.7E-17 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RPE_RS06865 b8d37de3f694c118f63a63bcca46ee32 306 PRINTS PR00820 CbxX/CfqX protein signature 30 44 5.5E-51 T 23-04-2016 IPR000470 CbxX/CfqX, monofunctional GO:0005524 RPE_RS06865 b8d37de3f694c118f63a63bcca46ee32 306 PRINTS PR00820 CbxX/CfqX protein signature 285 299 5.5E-51 T 23-04-2016 IPR000470 CbxX/CfqX, monofunctional GO:0005524 RPE_RS06865 b8d37de3f694c118f63a63bcca46ee32 306 PRINTS PR00820 CbxX/CfqX protein signature 48 62 5.5E-51 T 23-04-2016 IPR000470 CbxX/CfqX, monofunctional GO:0005524 RPE_RS06865 b8d37de3f694c118f63a63bcca46ee32 306 PRINTS PR00820 CbxX/CfqX protein signature 146 159 5.5E-51 T 23-04-2016 IPR000470 CbxX/CfqX, monofunctional GO:0005524 RPE_RS06865 b8d37de3f694c118f63a63bcca46ee32 306 PRINTS PR00820 CbxX/CfqX protein signature 245 256 5.5E-51 T 23-04-2016 IPR000470 CbxX/CfqX, monofunctional GO:0005524 RPE_RS06865 b8d37de3f694c118f63a63bcca46ee32 306 PRINTS PR00820 CbxX/CfqX protein signature 89 104 5.5E-51 T 23-04-2016 IPR000470 CbxX/CfqX, monofunctional GO:0005524 RPE_RS06865 b8d37de3f694c118f63a63bcca46ee32 306 PRINTS PR00820 CbxX/CfqX protein signature 260 271 5.5E-51 T 23-04-2016 IPR000470 CbxX/CfqX, monofunctional GO:0005524 RPE_RS06865 b8d37de3f694c118f63a63bcca46ee32 306 Gene3D G3DSA:3.40.50.300 33 225 2.1E-26 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS06865 b8d37de3f694c118f63a63bcca46ee32 306 PANTHER PTHR13779:SF20 38 293 1.7E-97 T 23-04-2016 RPE_RS06865 b8d37de3f694c118f63a63bcca46ee32 306 PANTHER PTHR13779 38 293 1.7E-97 T 23-04-2016 RPE_RS00270 9d3ade8bde888048f3a33bc16878b09b 158 SUPERFAMILY SSF158682 20 150 3.92E-22 T 23-04-2016 IPR029024 TerB-like RPE_RS00270 9d3ade8bde888048f3a33bc16878b09b 158 Gene3D G3DSA:1.10.3680.10 20 148 6.6E-14 T 23-04-2016 IPR029024 TerB-like RPE_RS00270 9d3ade8bde888048f3a33bc16878b09b 158 Pfam PF05099 Tellurite resistance protein TerB 6 145 1.3E-33 T 23-04-2016 IPR007791 Co-chaperone DjlA, N-terminal RPE_RS15790 28e3e47cd2afc159a3746655f62c3701 171 Pfam PF06228 Haem utilisation ChuX/HutX 25 161 3.7E-29 T 23-04-2016 IPR010413 Heme utilization carrier protein HutX-like RPE_RS15790 28e3e47cd2afc159a3746655f62c3701 171 PIRSF PIRSF030840 3 167 3.2E-54 T 23-04-2016 IPR010413 Heme utilization carrier protein HutX-like RPE_RS15790 28e3e47cd2afc159a3746655f62c3701 171 SUPERFAMILY SSF144064 9 164 2.62E-51 T 23-04-2016 RPE_RS15790 28e3e47cd2afc159a3746655f62c3701 171 TIGRFAM TIGR04108 HutX: putative heme utilization carrier protein HutX 10 161 1.8E-60 T 23-04-2016 IPR010413 Heme utilization carrier protein HutX-like RPE_RS15790 28e3e47cd2afc159a3746655f62c3701 171 Gene3D G3DSA:3.40.1570.10 8 165 2.6E-66 T 23-04-2016 RPE_RS08660 9ad42fc3705cb7d7a2ad1cfd862dfd84 480 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 5 474 1.6E-125 T 23-04-2016 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 RPE_RS08660 9ad42fc3705cb7d7a2ad1cfd862dfd84 480 Pfam PF00361 Proton-conducting membrane transporter 125 410 1.9E-65 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RPE_RS08660 9ad42fc3705cb7d7a2ad1cfd862dfd84 480 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 160 184 1.3E-32 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RPE_RS08660 9ad42fc3705cb7d7a2ad1cfd862dfd84 480 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 231 255 1.3E-32 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RPE_RS08660 9ad42fc3705cb7d7a2ad1cfd862dfd84 480 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 130 149 1.3E-32 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RPE_RS08660 9ad42fc3705cb7d7a2ad1cfd862dfd84 480 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 319 338 1.3E-32 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RPE_RS08660 9ad42fc3705cb7d7a2ad1cfd862dfd84 480 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 371 397 1.3E-32 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RPE_RS08660 9ad42fc3705cb7d7a2ad1cfd862dfd84 480 PANTHER PTHR22773 1 475 2.0E-139 T 23-04-2016 RPE_RS08660 9ad42fc3705cb7d7a2ad1cfd862dfd84 480 PANTHER PTHR22773:SF40 1 475 2.0E-139 T 23-04-2016 RPE_RS00950 a9d51285371d7a6ebd525ce3190fd9b5 160 SMART SM00347 27 127 7.9E-23 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RPE_RS00950 a9d51285371d7a6ebd525ce3190fd9b5 160 SUPERFAMILY SSF46785 8 145 1.07E-31 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS00950 a9d51285371d7a6ebd525ce3190fd9b5 160 Gene3D G3DSA:1.10.10.10 7 141 2.2E-34 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS00950 a9d51285371d7a6ebd525ce3190fd9b5 160 PRINTS PR00598 Bacterial regulatory protein MarR family signature 68 83 3.9E-9 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RPE_RS00950 a9d51285371d7a6ebd525ce3190fd9b5 160 PRINTS PR00598 Bacterial regulatory protein MarR family signature 87 103 3.9E-9 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RPE_RS00950 a9d51285371d7a6ebd525ce3190fd9b5 160 PRINTS PR00598 Bacterial regulatory protein MarR family signature 51 67 3.9E-9 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RPE_RS00950 a9d51285371d7a6ebd525ce3190fd9b5 160 PANTHER PTHR33164 1 151 3.4E-27 T 23-04-2016 RPE_RS00950 a9d51285371d7a6ebd525ce3190fd9b5 160 Pfam PF01047 MarR family 34 91 2.9E-16 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RPE_RS08765 1c12d49e90d05b11e2673942feb3802e 408 Pfam PF00520 Ion transport protein 32 256 8.8E-34 T 23-04-2016 IPR005821 Ion transport domain GO:0005216|GO:0006811|GO:0016020|GO:0055085 RPE_RS08765 1c12d49e90d05b11e2673942feb3802e 408 Gene3D G3DSA:1.10.287.70 30 250 4.2E-51 T 23-04-2016 RPE_RS08765 1c12d49e90d05b11e2673942feb3802e 408 SUPERFAMILY SSF81324 26 251 4.06E-49 T 23-04-2016 RPE_RS08765 1c12d49e90d05b11e2673942feb3802e 408 Gene3D G3DSA:2.60.120.10 263 390 7.9E-29 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS08765 1c12d49e90d05b11e2673942feb3802e 408 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 336 353 - T 23-04-2016 IPR018488 Cyclic nucleotide-binding, conserved site RPE_RS08765 1c12d49e90d05b11e2673942feb3802e 408 PRINTS PR00169 Potassium channel signature 134 160 1.1E-35 T 23-04-2016 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 RPE_RS08765 1c12d49e90d05b11e2673942feb3802e 408 PRINTS PR00169 Potassium channel signature 163 186 1.1E-35 T 23-04-2016 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 RPE_RS08765 1c12d49e90d05b11e2673942feb3802e 408 PRINTS PR00169 Potassium channel signature 194 216 1.1E-35 T 23-04-2016 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 RPE_RS08765 1c12d49e90d05b11e2673942feb3802e 408 PRINTS PR00169 Potassium channel signature 223 249 1.1E-35 T 23-04-2016 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 RPE_RS08765 1c12d49e90d05b11e2673942feb3802e 408 PRINTS PR00169 Potassium channel signature 23 51 1.1E-35 T 23-04-2016 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 RPE_RS08765 1c12d49e90d05b11e2673942feb3802e 408 PRINTS PR00169 Potassium channel signature 65 88 1.1E-35 T 23-04-2016 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 RPE_RS08765 1c12d49e90d05b11e2673942feb3802e 408 SMART SM00100 270 386 9.7E-17 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RPE_RS08765 1c12d49e90d05b11e2673942feb3802e 408 PANTHER PTHR11537 12 256 4.0E-54 T 23-04-2016 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 RPE_RS08765 1c12d49e90d05b11e2673942feb3802e 408 PANTHER PTHR11537:SF14 12 256 4.0E-54 T 23-04-2016 RPE_RS08765 1c12d49e90d05b11e2673942feb3802e 408 Pfam PF00027 Cyclic nucleotide-binding domain 289 373 1.4E-18 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RPE_RS08765 1c12d49e90d05b11e2673942feb3802e 408 SUPERFAMILY SSF51206 260 387 2.88E-28 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like RPE_RS06710 0883875a0a2b41e6408118a83810f107 56 Pfam PF00556 Antenna complex alpha/beta subunit 1 41 2.5E-17 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS06710 0883875a0a2b41e6408118a83810f107 56 PRINTS PR00673 Light harvesting protein A chain signature 29 40 1.1E-11 T 23-04-2016 IPR018332 Antenna complex, alpha subunit RPE_RS06710 0883875a0a2b41e6408118a83810f107 56 PRINTS PR00673 Light harvesting protein A chain signature 3 10 1.1E-11 T 23-04-2016 IPR018332 Antenna complex, alpha subunit RPE_RS06710 0883875a0a2b41e6408118a83810f107 56 PRINTS PR00673 Light harvesting protein A chain signature 10 29 1.1E-11 T 23-04-2016 IPR018332 Antenna complex, alpha subunit RPE_RS06710 0883875a0a2b41e6408118a83810f107 56 Gene3D G3DSA:1.20.5.890 1 43 7.2E-24 T 23-04-2016 RPE_RS06710 0883875a0a2b41e6408118a83810f107 56 SUPERFAMILY SSF56918 1 47 1.49E-20 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS06710 0883875a0a2b41e6408118a83810f107 56 ProSitePatterns PS00968 Antenna complexes alpha subunits signature. 23 41 - T 23-04-2016 IPR002361 Antenna complex, alpha subunit conserved site GO:0016021|GO:0019684|GO:0019866|GO:0030077|GO:0045156 RPE_RS11740 75d5f8e6ac56fb234eaf4cfe25e86ed4 374 Pfam PF07690 Major Facilitator Superfamily 2 218 2.8E-21 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RPE_RS11740 75d5f8e6ac56fb234eaf4cfe25e86ed4 374 PANTHER PTHR23501 1 366 3.1E-87 T 23-04-2016 RPE_RS11740 75d5f8e6ac56fb234eaf4cfe25e86ed4 374 SUPERFAMILY SSF103473 1 368 4.05E-48 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS11740 75d5f8e6ac56fb234eaf4cfe25e86ed4 374 Gene3D G3DSA:1.20.1250.20 189 365 1.7E-14 T 23-04-2016 RPE_RS11740 75d5f8e6ac56fb234eaf4cfe25e86ed4 374 Gene3D G3DSA:1.20.1250.20 1 171 1.0E-21 T 23-04-2016 RPE_RS11740 75d5f8e6ac56fb234eaf4cfe25e86ed4 374 PANTHER PTHR23501:SF88 1 366 3.1E-87 T 23-04-2016 RPE_RS01480 cef3ccffe1b8857a880d28eda58e9876 85 Pfam PF13711 Domain of unknown function (DUF4160) 9 70 5.9E-15 T 23-04-2016 IPR025427 Protein of unknown function DUF4160 RPE_RS14035 7a5ffd11bdebff589e0e7b3c7a6a69e0 258 Pfam PF06776 Invasion associated locus B (IalB) protein 88 221 6.3E-35 T 23-04-2016 IPR010642 Invasion protein B RPE_RS18510 38de7125e8647f1b7f48e1b65958ffb4 119 Gene3D G3DSA:1.10.10.10 3 56 1.5E-11 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS18510 38de7125e8647f1b7f48e1b65958ffb4 119 Pfam PF13565 Homeodomain-like domain 37 105 3.9E-9 T 23-04-2016 RPE_RS18510 38de7125e8647f1b7f48e1b65958ffb4 119 PANTHER PTHR23022 2 119 1.4E-13 T 23-04-2016 RPE_RS18510 38de7125e8647f1b7f48e1b65958ffb4 119 SUPERFAMILY SSF46689 1 109 2.2E-27 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS19740 38de7125e8647f1b7f48e1b65958ffb4 119 Gene3D G3DSA:1.10.10.10 3 56 1.5E-11 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS19740 38de7125e8647f1b7f48e1b65958ffb4 119 Pfam PF13565 Homeodomain-like domain 37 105 3.9E-9 T 23-04-2016 RPE_RS19740 38de7125e8647f1b7f48e1b65958ffb4 119 PANTHER PTHR23022 2 119 1.4E-13 T 23-04-2016 RPE_RS19740 38de7125e8647f1b7f48e1b65958ffb4 119 SUPERFAMILY SSF46689 1 109 2.2E-27 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS09410 6ed6531a8d11fed3901e3d32d2ffc048 144 Pfam PF02657 Fe-S metabolism associated domain 10 134 1.3E-45 T 23-04-2016 IPR003808 Fe-S metabolism associated domain, SufE-like UniPathway: UPA00266 RPE_RS09410 6ed6531a8d11fed3901e3d32d2ffc048 144 Gene3D G3DSA:3.90.1010.10 3 141 3.4E-54 T 23-04-2016 RPE_RS09410 6ed6531a8d11fed3901e3d32d2ffc048 144 PANTHER PTHR12735:SF11 1 141 1.4E-48 T 23-04-2016 RPE_RS09410 6ed6531a8d11fed3901e3d32d2ffc048 144 SUPERFAMILY SSF82649 2 140 6.28E-47 T 23-04-2016 RPE_RS09410 6ed6531a8d11fed3901e3d32d2ffc048 144 PANTHER PTHR12735 1 141 1.4E-48 T 23-04-2016 RPE_RS01360 74fffa94fc35fe74559edca6c6678782 451 PANTHER PTHR21666 51 443 6.1E-134 T 23-04-2016 RPE_RS01360 74fffa94fc35fe74559edca6c6678782 451 PANTHER PTHR21666:SF204 51 443 6.1E-134 T 23-04-2016 RPE_RS01360 74fffa94fc35fe74559edca6c6678782 451 Pfam PF01551 Peptidase family M23 336 436 2.1E-21 T 23-04-2016 IPR016047 Peptidase M23 RPE_RS01360 74fffa94fc35fe74559edca6c6678782 451 Gene3D G3DSA:2.70.70.10 297 442 1.2E-26 T 23-04-2016 RPE_RS01360 74fffa94fc35fe74559edca6c6678782 451 SUPERFAMILY SSF51261 262 440 7.85E-24 T 23-04-2016 IPR011055 Duplicated hybrid motif RPE_RS13745 e0c36066c6fd8f0f6e4efe82696772a5 426 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 89 309 3.2E-15 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RPE_RS13745 e0c36066c6fd8f0f6e4efe82696772a5 426 Gene3D G3DSA:2.40.50.100 196 231 4.7E-24 T 23-04-2016 RPE_RS13745 e0c36066c6fd8f0f6e4efe82696772a5 426 Gene3D G3DSA:2.40.50.100 88 121 4.7E-24 T 23-04-2016 RPE_RS13745 e0c36066c6fd8f0f6e4efe82696772a5 426 PANTHER PTHR30469 13 401 3.5E-171 T 23-04-2016 RPE_RS13745 e0c36066c6fd8f0f6e4efe82696772a5 426 PANTHER PTHR30469:SF12 13 401 3.5E-171 T 23-04-2016 IPR022824 Multidrug resistance protein MdtA RPE_RS13745 e0c36066c6fd8f0f6e4efe82696772a5 426 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 65 390 7.2E-80 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RPE_RS13745 e0c36066c6fd8f0f6e4efe82696772a5 426 SUPERFAMILY SSF111369 77 314 7.32E-61 T 23-04-2016 RPE_RS24305 d1f44a2016ca626a9880187448ac339e 121 SUPERFAMILY SSF50346 6 119 5.1E-29 T 23-04-2016 IPR011033 PRC-barrel-like RPE_RS24305 d1f44a2016ca626a9880187448ac339e 121 Gene3D G3DSA:2.30.30.240 16 72 7.5E-14 T 23-04-2016 RPE_RS24305 d1f44a2016ca626a9880187448ac339e 121 Pfam PF05239 PRC-barrel domain 16 79 1.3E-12 T 23-04-2016 IPR027275 PRC-barrel domain RPE_RS24305 d1f44a2016ca626a9880187448ac339e 121 PANTHER PTHR36505:SF1 3 118 2.1E-48 T 23-04-2016 RPE_RS24305 d1f44a2016ca626a9880187448ac339e 121 PANTHER PTHR36505 3 118 2.1E-48 T 23-04-2016 RPE_RS03025 533b1ac3be24f84e320b422d15ed1087 437 TIGRFAM TIGR02259 benz_CoA_red_A: benzoyl-CoA reductase, subunit A 1 431 2.2E-263 T 23-04-2016 IPR011954 Benzoyl-CoA reductase, subunit A KEGG: 00362+1.3.7.8 RPE_RS03025 533b1ac3be24f84e320b422d15ed1087 437 Gene3D G3DSA:3.30.420.40 231 311 1.3E-54 T 23-04-2016 RPE_RS03025 533b1ac3be24f84e320b422d15ed1087 437 Gene3D G3DSA:3.30.420.40 1 60 1.3E-54 T 23-04-2016 RPE_RS03025 533b1ac3be24f84e320b422d15ed1087 437 TIGRFAM TIGR00241 CoA_E_activ: putative CoA-substrate-specific enzyme activase 204 427 5.8E-51 T 23-04-2016 IPR008275 CoA enzyme activase RPE_RS03025 533b1ac3be24f84e320b422d15ed1087 437 PANTHER PTHR32329 214 435 2.2E-59 T 23-04-2016 RPE_RS03025 533b1ac3be24f84e320b422d15ed1087 437 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 5 431 8.1E-126 T 23-04-2016 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type RPE_RS03025 533b1ac3be24f84e320b422d15ed1087 437 SUPERFAMILY SSF53067 4 32 4.02E-31 T 23-04-2016 RPE_RS03025 533b1ac3be24f84e320b422d15ed1087 437 SUPERFAMILY SSF53067 208 433 4.02E-31 T 23-04-2016 RPE_RS00200 9963e5198c654ae24f24aaeb15468cb8 417 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 377 392 9.7E-7 T 23-04-2016 RPE_RS00200 9963e5198c654ae24f24aaeb15468cb8 417 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 8 30 9.7E-7 T 23-04-2016 RPE_RS00200 9963e5198c654ae24f24aaeb15468cb8 417 PANTHER PTHR10742 4 408 3.6E-64 T 23-04-2016 RPE_RS00200 9963e5198c654ae24f24aaeb15468cb8 417 Gene3D G3DSA:3.50.50.60 174 271 4.6E-50 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS00200 9963e5198c654ae24f24aaeb15468cb8 417 Gene3D G3DSA:3.50.50.60 5 88 4.6E-50 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS00200 9963e5198c654ae24f24aaeb15468cb8 417 Gene3D G3DSA:3.50.50.60 368 410 4.6E-50 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS00200 9963e5198c654ae24f24aaeb15468cb8 417 Pfam PF01593 Flavin containing amine oxidoreductase 17 93 2.5E-18 T 23-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 RPE_RS00200 9963e5198c654ae24f24aaeb15468cb8 417 Pfam PF01593 Flavin containing amine oxidoreductase 168 409 3.0E-28 T 23-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 RPE_RS00200 9963e5198c654ae24f24aaeb15468cb8 417 SUPERFAMILY SSF51905 372 410 1.94E-54 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS00200 9963e5198c654ae24f24aaeb15468cb8 417 SUPERFAMILY SSF51905 4 268 1.94E-54 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS00200 9963e5198c654ae24f24aaeb15468cb8 417 SUPERFAMILY SSF54373 275 360 7.2E-10 T 23-04-2016 RPE_RS07300 24e7d2dad6291bcc052582b2c8d29197 361 PANTHER PTHR30160 16 359 8.1E-73 T 23-04-2016 RPE_RS07300 24e7d2dad6291bcc052582b2c8d29197 361 PANTHER PTHR30160:SF7 16 359 8.1E-73 T 23-04-2016 RPE_RS07300 24e7d2dad6291bcc052582b2c8d29197 361 Gene3D G3DSA:3.40.50.2000 178 350 4.6E-47 T 23-04-2016 RPE_RS07300 24e7d2dad6291bcc052582b2c8d29197 361 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 89 329 1.8E-39 T 23-04-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 RPE_RS07300 24e7d2dad6291bcc052582b2c8d29197 361 Gene3D G3DSA:3.40.50.2000 22 166 9.2E-37 T 23-04-2016 RPE_RS07300 24e7d2dad6291bcc052582b2c8d29197 361 TIGRFAM TIGR02195 heptsyl_trn_II: lipopolysaccharide heptosyltransferase II 22 347 1.9E-79 T 23-04-2016 IPR011910 Lipopolysaccharide heptosyltransferase II GO:0009103|GO:0016757 KEGG: 00231+2.-.-.-|UniPathway: UPA00958 RPE_RS07300 24e7d2dad6291bcc052582b2c8d29197 361 SUPERFAMILY SSF53756 22 350 2.51E-83 T 23-04-2016 RPE_RS13015 fcb237cfa0e75fa3d8f381c80ab94445 543 TIGRFAM TIGR00337 PyrG: CTP synthase 2 535 9.2E-228 T 23-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 RPE_RS13015 fcb237cfa0e75fa3d8f381c80ab94445 543 PANTHER PTHR11550 1 539 0.0 T 23-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 RPE_RS13015 fcb237cfa0e75fa3d8f381c80ab94445 543 Pfam PF00117 Glutamine amidotransferase class-I 301 535 1.6E-56 T 23-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 RPE_RS13015 fcb237cfa0e75fa3d8f381c80ab94445 543 SUPERFAMILY SSF52317 289 538 3.21E-79 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RPE_RS13015 fcb237cfa0e75fa3d8f381c80ab94445 543 Pfam PF06418 CTP synthase N-terminus 3 263 1.4E-117 T 23-04-2016 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 RPE_RS13015 fcb237cfa0e75fa3d8f381c80ab94445 543 Gene3D G3DSA:3.40.50.300 1 283 3.5E-122 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS13015 fcb237cfa0e75fa3d8f381c80ab94445 543 SUPERFAMILY SSF52540 1 265 1.47E-117 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS13015 fcb237cfa0e75fa3d8f381c80ab94445 543 Hamap MF_01227 CTP synthase [pyrG]. 2 540 50.047 T 23-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 RPE_RS13015 fcb237cfa0e75fa3d8f381c80ab94445 543 Gene3D G3DSA:3.40.50.880 288 539 4.8E-97 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RPE_RS11565 0c4bf54d3771cb453bf93332d032b791 325 PANTHER PTHR11695 16 324 1.0E-121 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RPE_RS11565 0c4bf54d3771cb453bf93332d032b791 325 PANTHER PTHR11695:SF31 16 324 1.0E-121 T 23-04-2016 RPE_RS11565 0c4bf54d3771cb453bf93332d032b791 325 SUPERFAMILY SSF51735 117 283 1.97E-46 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS11565 0c4bf54d3771cb453bf93332d032b791 325 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 90 8.8E-12 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RPE_RS11565 0c4bf54d3771cb453bf93332d032b791 325 SUPERFAMILY SSF50129 3 141 2.43E-38 T 23-04-2016 IPR011032 GroES-like RPE_RS11565 0c4bf54d3771cb453bf93332d032b791 325 Gene3D G3DSA:3.40.50.720 146 261 5.6E-34 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS11565 0c4bf54d3771cb453bf93332d032b791 325 Gene3D G3DSA:3.90.180.10 3 145 4.1E-46 T 23-04-2016 IPR011032 GroES-like RPE_RS11565 0c4bf54d3771cb453bf93332d032b791 325 SMART SM00829 11 322 1.2E-51 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RPE_RS11565 0c4bf54d3771cb453bf93332d032b791 325 Pfam PF00107 Zinc-binding dehydrogenase 152 266 3.9E-29 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RPE_RS04800 31416f1d44570d2f62c5d0358b4ebf54 319 PANTHER PTHR11432:SF1 5 319 7.5E-125 T 23-04-2016 RPE_RS04800 31416f1d44570d2f62c5d0358b4ebf54 319 Pfam PF00146 NADH dehydrogenase 16 308 7.0E-41 T 23-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 RPE_RS04800 31416f1d44570d2f62c5d0358b4ebf54 319 PANTHER PTHR11432 5 319 7.5E-125 T 23-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 RPE_RS13535 8e73c383fcea2bae2efc260dfb5b238a 274 PANTHER PTHR30371 2 270 2.7E-96 T 23-04-2016 RPE_RS13535 8e73c383fcea2bae2efc260dfb5b238a 274 PANTHER PTHR30371:SF0 2 270 2.7E-96 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RPE_RS13535 8e73c383fcea2bae2efc260dfb5b238a 274 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 3 251 18.266 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RPE_RS13535 8e73c383fcea2bae2efc260dfb5b238a 274 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 13 237 4.5E-59 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RPE_RS13535 8e73c383fcea2bae2efc260dfb5b238a 274 ProSitePatterns PS01218 TatC family signature. 165 184 - T 23-04-2016 IPR019820 Sec-independent periplasmic protein translocase, conserved site RPE_RS13535 8e73c383fcea2bae2efc260dfb5b238a 274 Pfam PF00902 Sec-independent protein translocase protein (TatC) 15 232 9.9E-67 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RPE_RS13535 8e73c383fcea2bae2efc260dfb5b238a 274 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 90 108 4.9E-41 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RPE_RS13535 8e73c383fcea2bae2efc260dfb5b238a 274 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 108 134 4.9E-41 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RPE_RS13535 8e73c383fcea2bae2efc260dfb5b238a 274 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 165 193 4.9E-41 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RPE_RS13535 8e73c383fcea2bae2efc260dfb5b238a 274 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 12 39 4.9E-41 T 23-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RPE_RS15305 5679c8988621ed263493c4fe8134bbad 214 SUPERFAMILY SSF109755 17 207 2.27E-5 T 23-04-2016 RPE_RS15305 5679c8988621ed263493c4fe8134bbad 214 PANTHER PTHR37298 3 214 1.1E-67 T 23-04-2016 RPE_RS15305 5679c8988621ed263493c4fe8134bbad 214 Pfam PF01865 Protein of unknown function DUF47 9 212 3.3E-47 T 23-04-2016 IPR018445 Putative phosphate transport regulator RPE_RS10270 f52b9dd75a5b808655c01cb30f7db77a 272 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 23 271 6.0E-87 T 23-04-2016 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 RPE_RS10270 f52b9dd75a5b808655c01cb30f7db77a 272 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 264 6.4E-15 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS10270 f52b9dd75a5b808655c01cb30f7db77a 272 SUPERFAMILY SSF161098 74 264 4.45E-37 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS10270 f52b9dd75a5b808655c01cb30f7db77a 272 PANTHER PTHR30043 20 272 2.2E-69 T 23-04-2016 RPE_RS10270 f52b9dd75a5b808655c01cb30f7db77a 272 Gene3D G3DSA:1.10.3720.10 72 270 5.8E-32 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS10270 f52b9dd75a5b808655c01cb30f7db77a 272 PANTHER PTHR30043:SF1 20 272 2.2E-69 T 23-04-2016 RPE_RS23175 3bc598fc401fca9d343db3805d8a3b33 462 SUPERFAMILY SSF53850 105 329 6.08E-38 T 23-04-2016 RPE_RS23175 3bc598fc401fca9d343db3805d8a3b33 462 Pfam PF13379 NMT1-like family 104 341 5.6E-80 T 23-04-2016 RPE_RS23175 3bc598fc401fca9d343db3805d8a3b33 462 PANTHER PTHR30024 61 459 2.7E-135 T 23-04-2016 RPE_RS23175 3bc598fc401fca9d343db3805d8a3b33 462 Gene3D G3DSA:3.40.190.10 200 337 4.0E-13 T 23-04-2016 RPE_RS23175 3bc598fc401fca9d343db3805d8a3b33 462 PANTHER PTHR30024:SF10 61 459 2.7E-135 T 23-04-2016 RPE_RS00565 21eea38e7ea648e390c0a7fdf58e6053 332 SUPERFAMILY SSF51735 123 294 7.4E-49 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS00565 21eea38e7ea648e390c0a7fdf58e6053 332 Gene3D G3DSA:3.90.180.10 2 138 9.9E-45 T 23-04-2016 IPR011032 GroES-like RPE_RS00565 21eea38e7ea648e390c0a7fdf58e6053 332 PANTHER PTHR11695:SF528 23 332 4.8E-121 T 23-04-2016 RPE_RS00565 21eea38e7ea648e390c0a7fdf58e6053 332 Pfam PF16884 N-terminal domain of oxidoreductase 6 111 2.3E-27 T 23-04-2016 RPE_RS00565 21eea38e7ea648e390c0a7fdf58e6053 332 SMART SM00829 19 330 2.9E-5 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RPE_RS00565 21eea38e7ea648e390c0a7fdf58e6053 332 Gene3D G3DSA:3.40.50.720 139 300 5.3E-69 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS00565 21eea38e7ea648e390c0a7fdf58e6053 332 Pfam PF00107 Zinc-binding dehydrogenase 157 290 1.8E-19 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RPE_RS00565 21eea38e7ea648e390c0a7fdf58e6053 332 PANTHER PTHR11695 23 332 4.8E-121 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RPE_RS00565 21eea38e7ea648e390c0a7fdf58e6053 332 SUPERFAMILY SSF50129 4 141 1.58E-32 T 23-04-2016 IPR011032 GroES-like RPE_RS03725 d27862ddadf99daa2268deee493e5136 300 Pfam PF03466 LysR substrate binding domain 87 293 2.8E-38 T 23-04-2016 IPR005119 LysR, substrate-binding RPE_RS03725 d27862ddadf99daa2268deee493e5136 300 Gene3D G3DSA:1.10.10.10 1 81 7.0E-28 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS03725 d27862ddadf99daa2268deee493e5136 300 PANTHER PTHR30126 1 256 6.4E-64 T 23-04-2016 RPE_RS03725 d27862ddadf99daa2268deee493e5136 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.3E-8 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS03725 d27862ddadf99daa2268deee493e5136 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.3E-8 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS03725 d27862ddadf99daa2268deee493e5136 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.3E-8 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS03725 d27862ddadf99daa2268deee493e5136 300 Gene3D G3DSA:3.40.190.10 90 177 3.1E-15 T 23-04-2016 RPE_RS03725 d27862ddadf99daa2268deee493e5136 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 5.4E-22 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS03725 d27862ddadf99daa2268deee493e5136 300 Gene3D G3DSA:3.40.190.10 178 267 1.4E-15 T 23-04-2016 RPE_RS03725 d27862ddadf99daa2268deee493e5136 300 SUPERFAMILY SSF53850 89 299 2.28E-37 T 23-04-2016 RPE_RS03725 d27862ddadf99daa2268deee493e5136 300 SUPERFAMILY SSF46785 1 111 9.4E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS00295 3f82c85f73e7bfc4921f76c64e0706d8 2000 PANTHER PTHR10887:SF340 1271 1589 3.3E-54 T 23-04-2016 RPE_RS00295 3f82c85f73e7bfc4921f76c64e0706d8 2000 PANTHER PTHR10887:SF340 685 768 3.3E-54 T 23-04-2016 RPE_RS00295 3f82c85f73e7bfc4921f76c64e0706d8 2000 PANTHER PTHR10887:SF340 48 63 3.3E-54 T 23-04-2016 RPE_RS00295 3f82c85f73e7bfc4921f76c64e0706d8 2000 Pfam PF11784 Protein of unknown function (DUF3320) 1833 1882 4.6E-18 T 23-04-2016 IPR021754 Protein of unknown function DUF3320 RPE_RS00295 3f82c85f73e7bfc4921f76c64e0706d8 2000 Pfam PF13195 Protein of unknown function (DUF4011) 402 573 3.7E-42 T 23-04-2016 IPR025103 Protein of unknown function DUF4011 RPE_RS00295 3f82c85f73e7bfc4921f76c64e0706d8 2000 Gene3D G3DSA:3.40.50.300 1330 1435 2.8E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS00295 3f82c85f73e7bfc4921f76c64e0706d8 2000 Gene3D G3DSA:3.40.50.300 681 797 2.8E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS00295 3f82c85f73e7bfc4921f76c64e0706d8 2000 PANTHER PTHR10887 1271 1589 3.3E-54 T 23-04-2016 RPE_RS00295 3f82c85f73e7bfc4921f76c64e0706d8 2000 PANTHER PTHR10887 685 768 3.3E-54 T 23-04-2016 RPE_RS00295 3f82c85f73e7bfc4921f76c64e0706d8 2000 PANTHER PTHR10887 48 63 3.3E-54 T 23-04-2016 RPE_RS00295 3f82c85f73e7bfc4921f76c64e0706d8 2000 Pfam PF13087 AAA domain 1391 1589 1.2E-14 T 23-04-2016 RPE_RS00295 3f82c85f73e7bfc4921f76c64e0706d8 2000 Pfam PF13245 Part of AAA domain 698 750 1.8E-7 T 23-04-2016 RPE_RS00295 3f82c85f73e7bfc4921f76c64e0706d8 2000 SUPERFAMILY SSF52540 1401 1615 3.39E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS00295 3f82c85f73e7bfc4921f76c64e0706d8 2000 SUPERFAMILY SSF52540 681 754 3.39E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS00295 3f82c85f73e7bfc4921f76c64e0706d8 2000 SUPERFAMILY SSF52540 1302 1367 3.39E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS00295 3f82c85f73e7bfc4921f76c64e0706d8 2000 Pfam PF13086 AAA domain 1296 1369 6.5E-9 T 23-04-2016 RPE_RS00295 3f82c85f73e7bfc4921f76c64e0706d8 2000 SUPERFAMILY SSF52980 1633 1742 1.61E-13 T 23-04-2016 IPR011335 Restriction endonuclease type II-like RPE_RS17190 c3819d9d55cf0e249a7a55e15b567f88 506 PIRSF PIRSF009451 17 506 8.0E-233 T 23-04-2016 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 RPE_RS17190 c3819d9d55cf0e249a7a55e15b567f88 506 Gene3D G3DSA:3.40.1080.10 14 234 4.6E-96 T 23-04-2016 RPE_RS17190 c3819d9d55cf0e249a7a55e15b567f88 506 Gene3D G3DSA:3.40.810.20 238 479 5.3E-71 T 23-04-2016 RPE_RS17190 c3819d9d55cf0e249a7a55e15b567f88 506 PANTHER PTHR40596 1 506 5.6E-261 T 23-04-2016 RPE_RS17190 c3819d9d55cf0e249a7a55e15b567f88 506 TIGRFAM TIGR01584 citF: citrate lyase, alpha subunit 37 505 1.2E-216 T 23-04-2016 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 RPE_RS17190 c3819d9d55cf0e249a7a55e15b567f88 506 Pfam PF04223 Citrate lyase, alpha subunit (CitF) 40 503 1.1E-222 T 23-04-2016 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 RPE_RS17190 c3819d9d55cf0e249a7a55e15b567f88 506 SUPERFAMILY SSF100950 17 234 2.93E-70 T 23-04-2016 RPE_RS17190 c3819d9d55cf0e249a7a55e15b567f88 506 SUPERFAMILY SSF100950 239 503 4.19E-57 T 23-04-2016 RPE_RS08140 9db8db181bb7ed94526533b97c4d62de 392 PANTHER PTHR36840 11 388 1.0E-72 T 23-04-2016 RPE_RS08140 9db8db181bb7ed94526533b97c4d62de 392 Pfam PF06772 Bacterial low temperature requirement A protein (LtrA) 17 375 3.4E-120 T 23-04-2016 IPR010640 Low temperature requirement A RPE_RS08140 9db8db181bb7ed94526533b97c4d62de 392 PANTHER PTHR36840:SF1 11 388 1.0E-72 T 23-04-2016 RPE_RS12295 72f096c1c159cd1dbf9c55222780d925 779 Gene3D G3DSA:3.20.20.450 514 760 1.2E-85 T 23-04-2016 IPR001633 EAL domain RPE_RS12295 72f096c1c159cd1dbf9c55222780d925 779 SUPERFAMILY SSF141868 518 764 6.41E-80 T 23-04-2016 IPR001633 EAL domain RPE_RS12295 72f096c1c159cd1dbf9c55222780d925 779 Pfam PF00990 Diguanylate cyclase, GGDEF domain 339 495 4.5E-45 T 23-04-2016 IPR000160 GGDEF domain RPE_RS12295 72f096c1c159cd1dbf9c55222780d925 779 SUPERFAMILY SSF55785 236 337 1.06E-11 T 23-04-2016 IPR000014 PAS domain RPE_RS12295 72f096c1c159cd1dbf9c55222780d925 779 PANTHER PTHR10799:SF774 219 611 2.2E-77 T 23-04-2016 RPE_RS12295 72f096c1c159cd1dbf9c55222780d925 779 PANTHER PTHR10799 219 611 2.2E-77 T 23-04-2016 RPE_RS12295 72f096c1c159cd1dbf9c55222780d925 779 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 274 335 2.5E-6 T 23-04-2016 IPR000014 PAS domain RPE_RS12295 72f096c1c159cd1dbf9c55222780d925 779 Gene3D G3DSA:3.30.450.20 204 326 3.2E-9 T 23-04-2016 RPE_RS12295 72f096c1c159cd1dbf9c55222780d925 779 Pfam PF00563 EAL domain 516 753 3.0E-66 T 23-04-2016 IPR001633 EAL domain RPE_RS12295 72f096c1c159cd1dbf9c55222780d925 779 SUPERFAMILY SSF55073 344 502 1.41E-45 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS12295 72f096c1c159cd1dbf9c55222780d925 779 SMART SM00052 510 758 1.1E-97 T 23-04-2016 IPR001633 EAL domain RPE_RS12295 72f096c1c159cd1dbf9c55222780d925 779 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 335 498 3.6E-39 T 23-04-2016 IPR000160 GGDEF domain RPE_RS12295 72f096c1c159cd1dbf9c55222780d925 779 Gene3D G3DSA:3.30.70.270 340 508 8.1E-55 T 23-04-2016 RPE_RS12295 72f096c1c159cd1dbf9c55222780d925 779 SMART SM00267 328 500 5.2E-63 T 23-04-2016 IPR000160 GGDEF domain RPE_RS09470 a5f33a3a86b49fc4516c2ffe8ddde9a4 170 Pfam PF03692 Putative zinc- or iron-chelating domain 33 101 5.3E-7 T 23-04-2016 IPR005358 Putative zinc- or iron-chelating domain containing protein RPE_RS09470 a5f33a3a86b49fc4516c2ffe8ddde9a4 170 PANTHER PTHR37421 9 160 8.7E-66 T 23-04-2016 RPE_RS09470 a5f33a3a86b49fc4516c2ffe8ddde9a4 170 PANTHER PTHR37421:SF1 9 160 8.7E-66 T 23-04-2016 RPE_RS09470 a5f33a3a86b49fc4516c2ffe8ddde9a4 170 Hamap MF_00676 UPF0260 protein YcgN [ycgN]. 11 157 42.129 T 23-04-2016 IPR008228 Uncharacterised conserved protein UCP006173 RPE_RS09470 a5f33a3a86b49fc4516c2ffe8ddde9a4 170 PIRSF PIRSF006173 7 157 5.4E-66 T 23-04-2016 IPR008228 Uncharacterised conserved protein UCP006173 RPE_RS03850 b4b8feb604dde1188aeb3bacaff53f3c 323 PANTHER PTHR10584:SF54 4 322 3.6E-86 T 23-04-2016 RPE_RS03850 b4b8feb604dde1188aeb3bacaff53f3c 323 PIRSF PIRSF000535 2 314 9.4E-85 T 23-04-2016 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 RPE_RS03850 b4b8feb604dde1188aeb3bacaff53f3c 323 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 4 311 1.1E-90 T 23-04-2016 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 RPE_RS03850 b4b8feb604dde1188aeb3bacaff53f3c 323 PANTHER PTHR10584 4 322 3.6E-86 T 23-04-2016 RPE_RS03850 b4b8feb604dde1188aeb3bacaff53f3c 323 Gene3D G3DSA:3.40.1190.20 36 313 2.0E-70 T 23-04-2016 IPR029056 Ribokinase-like RPE_RS03850 b4b8feb604dde1188aeb3bacaff53f3c 323 Pfam PF00294 pfkB family carbohydrate kinase 29 297 1.1E-42 T 23-04-2016 IPR011611 Carbohydrate kinase PfkB RPE_RS03850 b4b8feb604dde1188aeb3bacaff53f3c 323 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 252 265 - T 23-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RPE_RS03850 b4b8feb604dde1188aeb3bacaff53f3c 323 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 38 62 - T 23-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RPE_RS03850 b4b8feb604dde1188aeb3bacaff53f3c 323 SUPERFAMILY SSF53613 4 297 2.49E-64 T 23-04-2016 IPR029056 Ribokinase-like RPE_RS16015 f8cb045f4fb64487c8204ca72f2baf0c 190 SMART SM00903 21 168 8.2E-60 T 23-04-2016 IPR002563 Flavin reductase like domain GO:0010181 RPE_RS16015 f8cb045f4fb64487c8204ca72f2baf0c 190 SUPERFAMILY SSF50475 16 170 1.23E-49 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RPE_RS16015 f8cb045f4fb64487c8204ca72f2baf0c 190 PANTHER PTHR30466:SF7 11 181 3.0E-68 T 23-04-2016 RPE_RS16015 f8cb045f4fb64487c8204ca72f2baf0c 190 Gene3D G3DSA:2.30.110.10 11 166 3.6E-52 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RPE_RS16015 f8cb045f4fb64487c8204ca72f2baf0c 190 Pfam PF01613 Flavin reductase like domain 21 168 1.1E-34 T 23-04-2016 IPR002563 Flavin reductase like domain GO:0010181 RPE_RS16015 f8cb045f4fb64487c8204ca72f2baf0c 190 PANTHER PTHR30466 11 181 3.0E-68 T 23-04-2016 RPE_RS00720 b54cee2124364665d34f173162eace15 205 Pfam PF01202 Shikimate kinase 33 188 7.8E-48 T 23-04-2016 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 RPE_RS00720 b54cee2124364665d34f173162eace15 205 SUPERFAMILY SSF52540 27 188 7.07E-27 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS00720 b54cee2124364665d34f173162eace15 205 PANTHER PTHR21087 13 188 5.3E-59 T 23-04-2016 RPE_RS00720 b54cee2124364665d34f173162eace15 205 ProSitePatterns PS01128 Shikimate kinase signature. 80 105 - T 23-04-2016 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 RPE_RS00720 b54cee2124364665d34f173162eace15 205 Gene3D G3DSA:3.40.50.300 25 190 1.7E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS00720 b54cee2124364665d34f173162eace15 205 Hamap MF_00109 Shikimate kinase [aroK]. 24 189 27.773 T 23-04-2016 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 RPE_RS00720 b54cee2124364665d34f173162eace15 205 PANTHER PTHR21087:SF0 13 188 5.3E-59 T 23-04-2016 RPE_RS00720 b54cee2124364665d34f173162eace15 205 PRINTS PR01100 Shikimate kinase family signature 79 87 1.6E-22 T 23-04-2016 RPE_RS00720 b54cee2124364665d34f173162eace15 205 PRINTS PR01100 Shikimate kinase family signature 118 135 1.6E-22 T 23-04-2016 RPE_RS00720 b54cee2124364665d34f173162eace15 205 PRINTS PR01100 Shikimate kinase family signature 27 42 1.6E-22 T 23-04-2016 RPE_RS00720 b54cee2124364665d34f173162eace15 205 PRINTS PR01100 Shikimate kinase family signature 51 64 1.6E-22 T 23-04-2016 RPE_RS00720 b54cee2124364665d34f173162eace15 205 PRINTS PR01100 Shikimate kinase family signature 97 106 1.6E-22 T 23-04-2016 RPE_RS15605 a5d7db3679ec8d4524dd54e106087df4 203 Pfam PF05845 Bacterial phosphonate metabolism protein (PhnH) 9 197 2.5E-66 T 23-04-2016 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 RPE_RS15605 a5d7db3679ec8d4524dd54e106087df4 203 PIRSF PIRSF020680 1 203 4.7E-63 T 23-04-2016 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 RPE_RS15605 a5d7db3679ec8d4524dd54e106087df4 203 TIGRFAM TIGR03292 PhnH_redo: phosphonate C-P lyase system protein PhnH 10 196 1.3E-59 T 23-04-2016 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 RPE_RS15605 a5d7db3679ec8d4524dd54e106087df4 203 SUPERFAMILY SSF159709 17 197 4.32E-59 T 23-04-2016 RPE_RS12875 cac552e59194a7b347ef5bd819097baa 434 ProSitePatterns PS00480 Citrate synthase signature. 307 319 - T 23-04-2016 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 UniPathway: UPA00223 RPE_RS12875 cac552e59194a7b347ef5bd819097baa 434 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 16 427 1.6E-243 T 23-04-2016 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 UniPathway: UPA00223 RPE_RS12875 cac552e59194a7b347ef5bd819097baa 434 PIRSF PIRSF001369 42 434 5.9E-167 T 23-04-2016 IPR024176 Citrate synthase, bacterial-type UniPathway: UPA00223 RPE_RS12875 cac552e59194a7b347ef5bd819097baa 434 PANTHER PTHR11739 43 434 7.0E-198 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 RPE_RS12875 cac552e59194a7b347ef5bd819097baa 434 Gene3D G3DSA:1.10.230.10 285 378 1.6E-41 T 23-04-2016 IPR016143 Citrate synthase-like, small alpha subdomain RPE_RS12875 cac552e59194a7b347ef5bd819097baa 434 Pfam PF00285 Citrate synthase, C-terminal domain 50 416 2.3E-134 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 RPE_RS12875 cac552e59194a7b347ef5bd819097baa 434 PRINTS PR00143 Citrate synthase signature 245 273 5.1E-56 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 RPE_RS12875 cac552e59194a7b347ef5bd819097baa 434 PRINTS PR00143 Citrate synthase signature 384 398 5.1E-56 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 RPE_RS12875 cac552e59194a7b347ef5bd819097baa 434 PRINTS PR00143 Citrate synthase signature 169 182 5.1E-56 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 RPE_RS12875 cac552e59194a7b347ef5bd819097baa 434 PRINTS PR00143 Citrate synthase signature 300 320 5.1E-56 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 RPE_RS12875 cac552e59194a7b347ef5bd819097baa 434 PRINTS PR00143 Citrate synthase signature 364 380 5.1E-56 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 RPE_RS12875 cac552e59194a7b347ef5bd819097baa 434 PRINTS PR00143 Citrate synthase signature 223 238 5.1E-56 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 RPE_RS12875 cac552e59194a7b347ef5bd819097baa 434 Gene3D G3DSA:1.10.580.10 56 284 3.2E-99 T 23-04-2016 IPR016142 Citrate synthase-like, large alpha subdomain UniPathway: UPA00223 RPE_RS12875 cac552e59194a7b347ef5bd819097baa 434 SUPERFAMILY SSF48256 9 433 3.27E-167 T 23-04-2016 IPR002020 Citrate synthase GO:0046912 RPE_RS02010 9ffa18c0381fc08500288f73076ffb48 98 Gene3D G3DSA:3.30.460.10 4 96 2.9E-19 T 23-04-2016 RPE_RS02010 9ffa18c0381fc08500288f73076ffb48 98 SUPERFAMILY SSF81301 2 85 2.27E-17 T 23-04-2016 RPE_RS02010 9ffa18c0381fc08500288f73076ffb48 98 Pfam PF01909 Nucleotidyltransferase domain 17 83 2.0E-9 T 23-04-2016 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 RPE_RS02010 9ffa18c0381fc08500288f73076ffb48 98 PANTHER PTHR33571 1 98 9.8E-21 T 23-04-2016 RPE_RS05365 c870f3563834fac7f4299038515a2c8b 411 PANTHER PTHR11061:SF30 4 411 3.9E-78 T 23-04-2016 RPE_RS05365 c870f3563834fac7f4299038515a2c8b 411 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 268 404 1.1E-7 T 23-04-2016 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 RPE_RS05365 c870f3563834fac7f4299038515a2c8b 411 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 343 373 - T 23-04-2016 IPR030390 RNA methyltransferase TrmA, active site RPE_RS05365 c870f3563834fac7f4299038515a2c8b 411 Gene3D G3DSA:3.40.50.150 232 410 7.9E-40 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS05365 c870f3563834fac7f4299038515a2c8b 411 SUPERFAMILY SSF53335 59 411 6.54E-53 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS05365 c870f3563834fac7f4299038515a2c8b 411 SUPERFAMILY SSF50249 4 44 7.42E-6 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS05365 c870f3563834fac7f4299038515a2c8b 411 Gene3D G3DSA:2.40.50.140 4 71 5.6E-14 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS05365 c870f3563834fac7f4299038515a2c8b 411 PANTHER PTHR11061 4 411 3.9E-78 T 23-04-2016 RPE_RS02680 79e5bf8f8dfecca63027496f01dc249c 338 Pfam PF01548 Transposase 2 134 4.0E-9 T 23-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 RPE_RS02680 79e5bf8f8dfecca63027496f01dc249c 338 PANTHER PTHR33055:SF2 1 334 7.4E-102 T 23-04-2016 RPE_RS02680 79e5bf8f8dfecca63027496f01dc249c 338 Pfam PF02371 Transposase IS116/IS110/IS902 family 203 279 7.8E-20 T 23-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 RPE_RS02680 79e5bf8f8dfecca63027496f01dc249c 338 PANTHER PTHR33055 1 334 7.4E-102 T 23-04-2016 RPE_RS18890 79e5bf8f8dfecca63027496f01dc249c 338 Pfam PF01548 Transposase 2 134 4.0E-9 T 23-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 RPE_RS18890 79e5bf8f8dfecca63027496f01dc249c 338 PANTHER PTHR33055:SF2 1 334 7.4E-102 T 23-04-2016 RPE_RS18890 79e5bf8f8dfecca63027496f01dc249c 338 Pfam PF02371 Transposase IS116/IS110/IS902 family 203 279 7.8E-20 T 23-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 RPE_RS18890 79e5bf8f8dfecca63027496f01dc249c 338 PANTHER PTHR33055 1 334 7.4E-102 T 23-04-2016 RPE_RS03090 79e5bf8f8dfecca63027496f01dc249c 338 Pfam PF01548 Transposase 2 134 4.0E-9 T 23-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 RPE_RS03090 79e5bf8f8dfecca63027496f01dc249c 338 PANTHER PTHR33055:SF2 1 334 7.4E-102 T 23-04-2016 RPE_RS03090 79e5bf8f8dfecca63027496f01dc249c 338 Pfam PF02371 Transposase IS116/IS110/IS902 family 203 279 7.8E-20 T 23-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 RPE_RS03090 79e5bf8f8dfecca63027496f01dc249c 338 PANTHER PTHR33055 1 334 7.4E-102 T 23-04-2016 RPE_RS11510 79e5bf8f8dfecca63027496f01dc249c 338 Pfam PF01548 Transposase 2 134 4.0E-9 T 23-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 RPE_RS11510 79e5bf8f8dfecca63027496f01dc249c 338 PANTHER PTHR33055:SF2 1 334 7.4E-102 T 23-04-2016 RPE_RS11510 79e5bf8f8dfecca63027496f01dc249c 338 Pfam PF02371 Transposase IS116/IS110/IS902 family 203 279 7.8E-20 T 23-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 RPE_RS11510 79e5bf8f8dfecca63027496f01dc249c 338 PANTHER PTHR33055 1 334 7.4E-102 T 23-04-2016 RPE_RS21055 79e5bf8f8dfecca63027496f01dc249c 338 Pfam PF01548 Transposase 2 134 4.0E-9 T 23-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 RPE_RS21055 79e5bf8f8dfecca63027496f01dc249c 338 PANTHER PTHR33055:SF2 1 334 7.4E-102 T 23-04-2016 RPE_RS21055 79e5bf8f8dfecca63027496f01dc249c 338 Pfam PF02371 Transposase IS116/IS110/IS902 family 203 279 7.8E-20 T 23-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 RPE_RS21055 79e5bf8f8dfecca63027496f01dc249c 338 PANTHER PTHR33055 1 334 7.4E-102 T 23-04-2016 RPE_RS08555 79e5bf8f8dfecca63027496f01dc249c 338 Pfam PF01548 Transposase 2 134 4.0E-9 T 23-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 RPE_RS08555 79e5bf8f8dfecca63027496f01dc249c 338 PANTHER PTHR33055:SF2 1 334 7.4E-102 T 23-04-2016 RPE_RS08555 79e5bf8f8dfecca63027496f01dc249c 338 Pfam PF02371 Transposase IS116/IS110/IS902 family 203 279 7.8E-20 T 23-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 RPE_RS08555 79e5bf8f8dfecca63027496f01dc249c 338 PANTHER PTHR33055 1 334 7.4E-102 T 23-04-2016 RPE_RS19050 79e5bf8f8dfecca63027496f01dc249c 338 Pfam PF01548 Transposase 2 134 4.0E-9 T 23-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 RPE_RS19050 79e5bf8f8dfecca63027496f01dc249c 338 PANTHER PTHR33055:SF2 1 334 7.4E-102 T 23-04-2016 RPE_RS19050 79e5bf8f8dfecca63027496f01dc249c 338 Pfam PF02371 Transposase IS116/IS110/IS902 family 203 279 7.8E-20 T 23-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 RPE_RS19050 79e5bf8f8dfecca63027496f01dc249c 338 PANTHER PTHR33055 1 334 7.4E-102 T 23-04-2016 RPE_RS17010 cf5d3eb5ad30c257f1d12e76adec1ae4 142 PANTHER PTHR23089 4 112 5.5E-38 T 23-04-2016 IPR001310 Histidine triad (HIT) protein RPE_RS17010 cf5d3eb5ad30c257f1d12e76adec1ae4 142 SUPERFAMILY SSF54197 3 138 1.08E-39 T 23-04-2016 IPR011146 HIT-like domain GO:0003824 RPE_RS17010 cf5d3eb5ad30c257f1d12e76adec1ae4 142 PRINTS PR00332 Histidine triad family signature 9 25 1.162828E-17 T 23-04-2016 IPR001310 Histidine triad (HIT) protein RPE_RS17010 cf5d3eb5ad30c257f1d12e76adec1ae4 142 PRINTS PR00332 Histidine triad family signature 30 48 1.162828E-17 T 23-04-2016 IPR001310 Histidine triad (HIT) protein RPE_RS17010 cf5d3eb5ad30c257f1d12e76adec1ae4 142 PRINTS PR00332 Histidine triad family signature 97 107 1.162828E-17 T 23-04-2016 IPR001310 Histidine triad (HIT) protein RPE_RS17010 cf5d3eb5ad30c257f1d12e76adec1ae4 142 Pfam PF01230 HIT domain 16 111 8.6E-27 T 23-04-2016 IPR001310 Histidine triad (HIT) protein RPE_RS17010 cf5d3eb5ad30c257f1d12e76adec1ae4 142 Gene3D G3DSA:3.30.428.10 7 133 5.3E-36 T 23-04-2016 IPR011146 HIT-like domain GO:0003824 RPE_RS18285 adade66c4933a99c394720ee94be7ab4 250 PANTHER PTHR41523 11 249 5.0E-102 T 23-04-2016 RPE_RS18285 adade66c4933a99c394720ee94be7ab4 250 PANTHER PTHR41523:SF1 11 249 5.0E-102 T 23-04-2016 RPE_RS18285 adade66c4933a99c394720ee94be7ab4 250 SMART SM00911 58 140 3.5E-33 T 23-04-2016 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 RPE_RS18285 adade66c4933a99c394720ee94be7ab4 250 Pfam PF07536 HWE histidine kinase 58 140 1.9E-23 T 23-04-2016 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 RPE_RS00320 f9fc1c4d103d5d1e37ec23eaa1e92e3f 248 Pfam PF02602 Uroporphyrinogen-III synthase HemD 14 237 1.2E-34 T 23-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS00320 f9fc1c4d103d5d1e37ec23eaa1e92e3f 248 Gene3D G3DSA:3.40.50.10090 29 143 9.2E-15 T 23-04-2016 RPE_RS00320 f9fc1c4d103d5d1e37ec23eaa1e92e3f 248 SUPERFAMILY SSF69618 4 240 1.57E-43 T 23-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS00320 f9fc1c4d103d5d1e37ec23eaa1e92e3f 248 Gene3D G3DSA:3.40.50.10090 144 242 1.3E-8 T 23-04-2016 RPE_RS23115 21a20b44d6d57c6faf1a487a584212ad 200 Hamap MF_00276 Potassium-transporting ATPase KdpC subunit [kdpC]. 2 198 36.854 T 23-04-2016 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 RPE_RS23115 21a20b44d6d57c6faf1a487a584212ad 200 PIRSF PIRSF001296 1 200 1.9E-76 T 23-04-2016 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 RPE_RS23115 21a20b44d6d57c6faf1a487a584212ad 200 PANTHER PTHR30042:SF2 1 199 1.5E-85 T 23-04-2016 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 RPE_RS23115 21a20b44d6d57c6faf1a487a584212ad 200 PANTHER PTHR30042 1 199 1.5E-85 T 23-04-2016 RPE_RS23115 21a20b44d6d57c6faf1a487a584212ad 200 TIGRFAM TIGR00681 kdpC: K+-transporting ATPase, C subunit 4 197 1.3E-67 T 23-04-2016 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 RPE_RS23115 21a20b44d6d57c6faf1a487a584212ad 200 Pfam PF02669 K+-transporting ATPase, c chain 6 197 1.6E-74 T 23-04-2016 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 RPE_RS22685 c365b900afedd81e6ab435fbc5b23aca 64 Pfam PF00037 4Fe-4S binding domain 4 26 2.1E-5 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RPE_RS22685 c365b900afedd81e6ab435fbc5b23aca 64 SUPERFAMILY SSF54862 5 58 1.5E-13 T 23-04-2016 RPE_RS22685 c365b900afedd81e6ab435fbc5b23aca 64 Gene3D G3DSA:3.30.70.20 5 58 1.3E-12 T 23-04-2016 RPE_RS22685 c365b900afedd81e6ab435fbc5b23aca 64 PANTHER PTHR24960:SF38 4 58 3.0E-13 T 23-04-2016 RPE_RS22685 c365b900afedd81e6ab435fbc5b23aca 64 PANTHER PTHR24960 4 58 3.0E-13 T 23-04-2016 RPE_RS22685 c365b900afedd81e6ab435fbc5b23aca 64 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 10 21 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RPE_RS21045 eab791d3ddd5d5a9d6ef9095459c686a 343 Pfam PF02653 Branched-chain amino acid transport system / permease component 41 306 1.8E-36 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RPE_RS21045 eab791d3ddd5d5a9d6ef9095459c686a 343 PANTHER PTHR30482 6 342 2.0E-110 T 23-04-2016 RPE_RS21045 eab791d3ddd5d5a9d6ef9095459c686a 343 PANTHER PTHR30482:SF2 6 342 2.0E-110 T 23-04-2016 RPE_RS08155 624629cef0f6155f880482b3b151aa05 110 PIRSF PIRSF005894 1 107 1.1E-50 T 23-04-2016 IPR014434 Monothiol glutaredoxin RPE_RS08155 624629cef0f6155f880482b3b151aa05 110 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 4 100 4.8E-46 T 23-04-2016 IPR004480 Monothiol glutaredoxin-related RPE_RS08155 624629cef0f6155f880482b3b151aa05 110 Pfam PF00462 Glutaredoxin 16 80 7.2E-18 T 23-04-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 RPE_RS08155 624629cef0f6155f880482b3b151aa05 110 SUPERFAMILY SSF52833 2 104 7.08E-35 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS08155 624629cef0f6155f880482b3b151aa05 110 Gene3D G3DSA:3.40.30.10 7 99 9.2E-35 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS08155 624629cef0f6155f880482b3b151aa05 110 PANTHER PTHR10293:SF41 1 106 5.8E-73 T 23-04-2016 RPE_RS08155 624629cef0f6155f880482b3b151aa05 110 PANTHER PTHR10293 1 106 5.8E-73 T 23-04-2016 IPR004480 Monothiol glutaredoxin-related RPE_RS00055 9071de0e15b13be371fbbdea1af886d3 724 Gene3D G3DSA:2.70.150.10 194 334 5.0E-22 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 RPE_RS00055 9071de0e15b13be371fbbdea1af886d3 724 PRINTS PR00941 Cadmium-transporting ATPase signature 34 55 9.8E-6 T 23-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 RPE_RS00055 9071de0e15b13be371fbbdea1af886d3 724 PRINTS PR00941 Cadmium-transporting ATPase signature 300 316 9.8E-6 T 23-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 RPE_RS00055 9071de0e15b13be371fbbdea1af886d3 724 PRINTS PR00941 Cadmium-transporting ATPase signature 153 165 9.8E-6 T 23-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 RPE_RS00055 9071de0e15b13be371fbbdea1af886d3 724 PRINTS PR00941 Cadmium-transporting ATPase signature 23 32 9.8E-6 T 23-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 RPE_RS00055 9071de0e15b13be371fbbdea1af886d3 724 Gene3D G3DSA:3.40.1110.10 455 522 3.5E-4 T 23-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 RPE_RS00055 9071de0e15b13be371fbbdea1af886d3 724 PANTHER PTHR24093:SF50 3 722 2.3E-169 T 23-04-2016 RPE_RS00055 9071de0e15b13be371fbbdea1af886d3 724 SUPERFAMILY SSF81653 244 334 1.1E-20 T 23-04-2016 RPE_RS00055 9071de0e15b13be371fbbdea1af886d3 724 ProSitePatterns PS01229 Hypothetical cof family signature 2. 618 640 - T 23-04-2016 RPE_RS00055 9071de0e15b13be371fbbdea1af886d3 724 Pfam PF00122 E1-E2 ATPase 204 425 1.7E-56 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 RPE_RS00055 9071de0e15b13be371fbbdea1af886d3 724 SUPERFAMILY SSF55008 16 88 5.76E-16 T 23-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RPE_RS00055 9071de0e15b13be371fbbdea1af886d3 724 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 197 721 1.2E-98 T 23-04-2016 RPE_RS00055 9071de0e15b13be371fbbdea1af886d3 724 SUPERFAMILY SSF56784 483 718 4.95E-41 T 23-04-2016 IPR023214 HAD-like domain RPE_RS00055 9071de0e15b13be371fbbdea1af886d3 724 SUPERFAMILY SSF56784 432 452 4.95E-41 T 23-04-2016 IPR023214 HAD-like domain RPE_RS00055 9071de0e15b13be371fbbdea1af886d3 724 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 436 442 - T 23-04-2016 IPR018303 P-type ATPase, phosphorylation site RPE_RS00055 9071de0e15b13be371fbbdea1af886d3 724 Pfam PF00702 haloacid dehalogenase-like hydrolase 430 631 6.3E-33 T 23-04-2016 RPE_RS00055 9071de0e15b13be371fbbdea1af886d3 724 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 641 653 1.4E-15 T 23-04-2016 RPE_RS00055 9071de0e15b13be371fbbdea1af886d3 724 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 565 575 1.4E-15 T 23-04-2016 RPE_RS00055 9071de0e15b13be371fbbdea1af886d3 724 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 434 448 1.4E-15 T 23-04-2016 RPE_RS00055 9071de0e15b13be371fbbdea1af886d3 724 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 284 298 1.4E-15 T 23-04-2016 RPE_RS00055 9071de0e15b13be371fbbdea1af886d3 724 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 618 637 1.4E-15 T 23-04-2016 RPE_RS00055 9071de0e15b13be371fbbdea1af886d3 724 Pfam PF00403 Heavy-metal-associated domain 23 82 8.4E-8 T 23-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RPE_RS00055 9071de0e15b13be371fbbdea1af886d3 724 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 153 721 3.7E-169 T 23-04-2016 RPE_RS00055 9071de0e15b13be371fbbdea1af886d3 724 Gene3D G3DSA:3.40.50.1000 406 450 6.8E-40 T 23-04-2016 IPR023214 HAD-like domain RPE_RS00055 9071de0e15b13be371fbbdea1af886d3 724 Gene3D G3DSA:3.40.50.1000 538 687 6.8E-40 T 23-04-2016 IPR023214 HAD-like domain RPE_RS00055 9071de0e15b13be371fbbdea1af886d3 724 ProSitePatterns PS01047 Heavy-metal-associated domain. 25 54 - T 23-04-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 RPE_RS00055 9071de0e15b13be371fbbdea1af886d3 724 SUPERFAMILY SSF81665 335 428 1.57E-9 T 23-04-2016 RPE_RS00055 9071de0e15b13be371fbbdea1af886d3 724 SUPERFAMILY SSF81665 232 237 1.57E-9 T 23-04-2016 RPE_RS00055 9071de0e15b13be371fbbdea1af886d3 724 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 206 702 2.0E-68 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 RPE_RS00055 9071de0e15b13be371fbbdea1af886d3 724 Gene3D G3DSA:3.30.70.100 20 88 1.0E-17 T 23-04-2016 RPE_RS00055 9071de0e15b13be371fbbdea1af886d3 724 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 172 719 1.2E-158 T 23-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 RPE_RS00055 9071de0e15b13be371fbbdea1af886d3 724 PANTHER PTHR24093 3 722 2.3E-169 T 23-04-2016 RPE_RS21450 7b7e76bf6ecd5a03c4d65e2c8a037feb 265 PANTHER PTHR34857 12 262 2.2E-45 T 23-04-2016 RPE_RS21450 7b7e76bf6ecd5a03c4d65e2c8a037feb 265 Pfam PF02361 Cobalt transport protein 32 225 2.2E-26 T 23-04-2016 IPR003339 ABC/ECF transporter, transmembrane component RPE_RS21450 7b7e76bf6ecd5a03c4d65e2c8a037feb 265 PANTHER PTHR34857:SF2 12 262 2.2E-45 T 23-04-2016 RPE_RS21450 7b7e76bf6ecd5a03c4d65e2c8a037feb 265 TIGRFAM TIGR02454 ECF_T_CbiQ: cobalt ECF transporter T component CbiQ 26 221 2.0E-39 T 23-04-2016 IPR012809 Cobalt ECF transporter T component CbiQ GO:0005887|GO:0006824|GO:0043190 RPE_RS21620 9fb23555b45c657677f449ff9ef1e497 204 PANTHER PTHR11260 9 203 1.0E-32 T 23-04-2016 RPE_RS21620 9fb23555b45c657677f449ff9ef1e497 204 SUPERFAMILY SSF52833 1 89 9.81E-16 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS21620 9fb23555b45c657677f449ff9ef1e497 204 Gene3D G3DSA:1.20.1050.10 156 198 2.2E-4 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RPE_RS21620 9fb23555b45c657677f449ff9ef1e497 204 SUPERFAMILY SSF47616 74 198 2.03E-11 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RPE_RS21620 9fb23555b45c657677f449ff9ef1e497 204 Pfam PF13417 Glutathione S-transferase, N-terminal domain 5 81 1.5E-15 T 23-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RPE_RS21620 9fb23555b45c657677f449ff9ef1e497 204 PANTHER PTHR11260:SF178 9 203 1.0E-32 T 23-04-2016 RPE_RS21620 9fb23555b45c657677f449ff9ef1e497 204 Gene3D G3DSA:3.40.30.10 1 97 1.5E-16 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS00810 326e023a8a5b42f9901e568df8c2e69d 292 Gene3D G3DSA:1.10.8.10 9 92 4.7E-24 T 23-04-2016 RPE_RS00810 326e023a8a5b42f9901e568df8c2e69d 292 Gene3D G3DSA:3.40.50.150 95 289 1.1E-60 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS00810 326e023a8a5b42f9901e568df8c2e69d 292 Pfam PF13847 Methyltransferase domain 122 256 3.1E-13 T 23-04-2016 IPR025714 Methyltransferase domain RPE_RS00810 326e023a8a5b42f9901e568df8c2e69d 292 SUPERFAMILY SSF53335 13 287 5.48E-54 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS00810 326e023a8a5b42f9901e568df8c2e69d 292 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 15 265 2.6E-57 T 23-04-2016 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 RPE_RS00810 326e023a8a5b42f9901e568df8c2e69d 292 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 10 289 42.702 T 23-04-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 RPE_RS00810 326e023a8a5b42f9901e568df8c2e69d 292 PANTHER PTHR18895 17 289 1.5E-83 T 23-04-2016 RPE_RS00810 326e023a8a5b42f9901e568df8c2e69d 292 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 193 199 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RPE_RS00810 326e023a8a5b42f9901e568df8c2e69d 292 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 32 285 1.5E-78 T 23-04-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 RPE_RS00810 326e023a8a5b42f9901e568df8c2e69d 292 PANTHER PTHR18895:SF64 17 289 1.5E-83 T 23-04-2016 RPE_RS21060 92a236ea18705ee5be6ff9029857a1ee 392 Gene3D G3DSA:3.40.50.2300 153 304 9.6E-32 T 23-04-2016 RPE_RS21060 92a236ea18705ee5be6ff9029857a1ee 392 Pfam PF13458 Periplasmic binding protein 30 371 2.0E-76 T 23-04-2016 IPR028081 Leucine-binding protein domain RPE_RS21060 92a236ea18705ee5be6ff9029857a1ee 392 SUPERFAMILY SSF53822 30 382 9.42E-93 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RPE_RS21060 92a236ea18705ee5be6ff9029857a1ee 392 PANTHER PTHR30483 1 386 1.8E-168 T 23-04-2016 RPE_RS21060 92a236ea18705ee5be6ff9029857a1ee 392 Gene3D G3DSA:3.40.50.2300 25 151 2.4E-45 T 23-04-2016 RPE_RS21060 92a236ea18705ee5be6ff9029857a1ee 392 Gene3D G3DSA:3.40.50.2300 305 355 2.4E-45 T 23-04-2016 RPE_RS21060 92a236ea18705ee5be6ff9029857a1ee 392 PANTHER PTHR30483:SF13 1 386 1.8E-168 T 23-04-2016 RPE_RS18265 ffa533cdb1c11832ff4a4c9cf26f6514 389 Gene3D G3DSA:3.40.50.720 193 331 1.4E-38 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS18265 ffa533cdb1c11832ff4a4c9cf26f6514 389 Gene3D G3DSA:3.90.180.10 1 192 1.2E-53 T 23-04-2016 IPR011032 GroES-like RPE_RS18265 ffa533cdb1c11832ff4a4c9cf26f6514 389 SUPERFAMILY SSF51735 163 351 1.91E-63 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS18265 ffa533cdb1c11832ff4a4c9cf26f6514 389 Pfam PF13823 Alcohol dehydrogenase GroES-associated 1 23 3.9E-13 T 23-04-2016 IPR027399 Alcohol dehydrogenase GroES-associated RPE_RS18265 ffa533cdb1c11832ff4a4c9cf26f6514 389 SUPERFAMILY SSF50129 1 202 1.02E-61 T 23-04-2016 IPR011032 GroES-like RPE_RS18265 ffa533cdb1c11832ff4a4c9cf26f6514 389 Pfam PF00107 Zinc-binding dehydrogenase 196 286 1.9E-13 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RPE_RS18265 ffa533cdb1c11832ff4a4c9cf26f6514 389 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 150 1.9E-29 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RPE_RS18265 ffa533cdb1c11832ff4a4c9cf26f6514 389 PANTHER PTHR11695:SF281 126 262 1.4E-158 T 23-04-2016 RPE_RS18265 ffa533cdb1c11832ff4a4c9cf26f6514 389 PANTHER PTHR11695:SF281 12 106 1.4E-158 T 23-04-2016 RPE_RS18265 ffa533cdb1c11832ff4a4c9cf26f6514 389 PANTHER PTHR11695:SF281 288 389 1.4E-158 T 23-04-2016 RPE_RS18265 ffa533cdb1c11832ff4a4c9cf26f6514 389 PANTHER PTHR11695 126 262 1.4E-158 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RPE_RS18265 ffa533cdb1c11832ff4a4c9cf26f6514 389 PANTHER PTHR11695 12 106 1.4E-158 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RPE_RS18265 ffa533cdb1c11832ff4a4c9cf26f6514 389 PANTHER PTHR11695 288 389 1.4E-158 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RPE_RS06990 17dbd3f1649ace29098a0bf2acf1ea11 240 PANTHER PTHR24220 6 232 2.8E-88 T 23-04-2016 RPE_RS06990 17dbd3f1649ace29098a0bf2acf1ea11 240 SUPERFAMILY SSF52540 4 226 3.52E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS06990 17dbd3f1649ace29098a0bf2acf1ea11 240 Pfam PF00005 ABC transporter 20 162 8.8E-27 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS06990 17dbd3f1649ace29098a0bf2acf1ea11 240 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS06990 17dbd3f1649ace29098a0bf2acf1ea11 240 PANTHER PTHR24220:SF469 6 232 2.8E-88 T 23-04-2016 RPE_RS06990 17dbd3f1649ace29098a0bf2acf1ea11 240 Gene3D G3DSA:3.40.50.300 2 224 5.7E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS06990 17dbd3f1649ace29098a0bf2acf1ea11 240 SMART SM00382 29 211 6.7E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS09210 bde897532678c364c6bee105c59190ea 154 PANTHER PTHR23091 25 140 1.3E-18 T 23-04-2016 RPE_RS09210 bde897532678c364c6bee105c59190ea 154 Pfam PF00583 Acetyltransferase (GNAT) family 53 130 7.9E-10 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RPE_RS09210 bde897532678c364c6bee105c59190ea 154 SUPERFAMILY SSF55729 3 140 2.23E-17 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS09210 bde897532678c364c6bee105c59190ea 154 PANTHER PTHR23091:SF36 25 140 1.3E-18 T 23-04-2016 RPE_RS09210 bde897532678c364c6bee105c59190ea 154 Gene3D G3DSA:3.40.630.30 20 141 7.5E-18 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS23370 c6eb360719c079b59c4f08d576d73258 681 SMART SM01231 291 351 3.7E-16 T 23-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RPE_RS23370 c6eb360719c079b59c4f08d576d73258 681 PANTHER PTHR22617 4 681 4.2E-192 T 23-04-2016 RPE_RS23370 c6eb360719c079b59c4f08d576d73258 681 Gene3D G3DSA:2.40.50.180 561 619 1.3E-12 T 23-04-2016 RPE_RS23370 c6eb360719c079b59c4f08d576d73258 681 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 293 349 1.4E-11 T 23-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RPE_RS23370 c6eb360719c079b59c4f08d576d73258 681 Gene3D G3DSA:1.10.287.560 293 352 1.8E-16 T 23-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RPE_RS23370 c6eb360719c079b59c4f08d576d73258 681 Pfam PF01584 CheW-like domain 541 666 7.9E-24 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS23370 c6eb360719c079b59c4f08d576d73258 681 SUPERFAMILY SSF50341 536 665 6.02E-29 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS23370 c6eb360719c079b59c4f08d576d73258 681 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 399 536 5.1E-19 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS23370 c6eb360719c079b59c4f08d576d73258 681 SMART SM00073 4 101 1.8E-28 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS23370 c6eb360719c079b59c4f08d576d73258 681 Pfam PF01627 Hpt domain 9 92 3.0E-16 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS23370 c6eb360719c079b59c4f08d576d73258 681 SUPERFAMILY SSF55874 349 539 1.28E-38 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS23370 c6eb360719c079b59c4f08d576d73258 681 PRINTS PR00344 Bacterial sensor protein C-terminal signature 441 455 2.6E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS23370 c6eb360719c079b59c4f08d576d73258 681 PRINTS PR00344 Bacterial sensor protein C-terminal signature 521 534 2.6E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS23370 c6eb360719c079b59c4f08d576d73258 681 PRINTS PR00344 Bacterial sensor protein C-terminal signature 497 515 2.6E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS23370 c6eb360719c079b59c4f08d576d73258 681 PRINTS PR00344 Bacterial sensor protein C-terminal signature 481 491 2.6E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS23370 c6eb360719c079b59c4f08d576d73258 681 SMART SM00387 396 537 2.4E-26 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS23370 c6eb360719c079b59c4f08d576d73258 681 Gene3D G3DSA:3.30.565.10 353 536 3.1E-35 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS23370 c6eb360719c079b59c4f08d576d73258 681 Gene3D G3DSA:2.30.30.40 620 665 4.8E-19 T 23-04-2016 RPE_RS23370 c6eb360719c079b59c4f08d576d73258 681 Gene3D G3DSA:2.30.30.40 537 558 4.8E-19 T 23-04-2016 RPE_RS23370 c6eb360719c079b59c4f08d576d73258 681 SUPERFAMILY SSF47226 8 120 2.49E-28 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS23370 c6eb360719c079b59c4f08d576d73258 681 SUPERFAMILY SSF47384 293 352 2.94E-12 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS23370 c6eb360719c079b59c4f08d576d73258 681 Gene3D G3DSA:1.20.120.160 9 138 1.6E-33 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS23370 c6eb360719c079b59c4f08d576d73258 681 PANTHER PTHR22617:SF20 4 681 4.2E-192 T 23-04-2016 RPE_RS23370 c6eb360719c079b59c4f08d576d73258 681 SMART SM00260 529 665 5.2E-36 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS21440 e5bf87b14ab37ed46a9479f122963832 141 PANTHER PTHR33202 16 141 7.6E-59 T 23-04-2016 RPE_RS21440 e5bf87b14ab37ed46a9479f122963832 141 SUPERFAMILY SSF46785 12 136 5.92E-28 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS21440 e5bf87b14ab37ed46a9479f122963832 141 Pfam PF01475 Ferric uptake regulator family 19 109 1.5E-19 T 23-04-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 RPE_RS21440 e5bf87b14ab37ed46a9479f122963832 141 Gene3D G3DSA:1.10.10.10 11 91 8.5E-27 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS21440 e5bf87b14ab37ed46a9479f122963832 141 PANTHER PTHR33202:SF3 16 141 7.6E-59 T 23-04-2016 RPE_RS22585 4cd12d72916c347ade34adb9aa50ebe6 336 SUPERFAMILY SSF82649 7 123 1.07E-34 T 23-04-2016 RPE_RS22585 4cd12d72916c347ade34adb9aa50ebe6 336 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 276 336 1.0E-29 T 23-04-2016 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 RPE_RS22585 4cd12d72916c347ade34adb9aa50ebe6 336 PANTHER PTHR10093:SF1 10 172 2.8E-49 T 23-04-2016 RPE_RS22585 4cd12d72916c347ade34adb9aa50ebe6 336 Pfam PF01106 NifU-like domain 269 332 2.0E-17 T 23-04-2016 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 RPE_RS22585 4cd12d72916c347ade34adb9aa50ebe6 336 PANTHER PTHR10093 10 172 2.8E-49 T 23-04-2016 RPE_RS22585 4cd12d72916c347ade34adb9aa50ebe6 336 Pfam PF01592 NifU-like N terminal domain 6 124 8.0E-42 T 23-04-2016 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 RPE_RS22585 4cd12d72916c347ade34adb9aa50ebe6 336 PIRSF PIRSF000375 1 336 3.1E-101 T 23-04-2016 IPR016217 Nitrogen fixation, NifU RPE_RS22585 4cd12d72916c347ade34adb9aa50ebe6 336 Pfam PF04324 BFD-like [2Fe-2S] binding domain 134 182 8.4E-13 T 23-04-2016 IPR007419 BFD-like [2Fe-2S]-binding domain RPE_RS22585 4cd12d72916c347ade34adb9aa50ebe6 336 Gene3D G3DSA:3.90.1010.10 10 125 9.9E-34 T 23-04-2016 RPE_RS22585 4cd12d72916c347ade34adb9aa50ebe6 336 SUPERFAMILY SSF117916 261 335 1.11E-17 T 23-04-2016 RPE_RS22575 adf70c1a02f7acffeaef4d8d4f13caa8 386 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 199 212 - T 23-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RPE_RS22575 adf70c1a02f7acffeaef4d8d4f13caa8 386 Pfam PF00682 HMGL-like 13 270 1.7E-77 T 23-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 RPE_RS22575 adf70c1a02f7acffeaef4d8d4f13caa8 386 PANTHER PTHR10277:SF45 10 378 2.7E-121 T 23-04-2016 RPE_RS22575 adf70c1a02f7acffeaef4d8d4f13caa8 386 Gene3D G3DSA:3.20.20.70 10 341 1.4E-105 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS22575 adf70c1a02f7acffeaef4d8d4f13caa8 386 TIGRFAM TIGR02660 nifV_homocitr: homocitrate synthase 13 375 4.2E-156 T 23-04-2016 IPR013477 Homocitrate synthase NifV-type GO:0004410|GO:0051188 KEGG: 00300+2.3.3.14|KEGG: 00620+2.3.3.14|MetaCyc: PWY-3081|MetaCyc: PWY-7710 RPE_RS22575 adf70c1a02f7acffeaef4d8d4f13caa8 386 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 20 36 - T 23-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 RPE_RS22575 adf70c1a02f7acffeaef4d8d4f13caa8 386 SUPERFAMILY SSF51569 10 287 5.13E-79 T 23-04-2016 RPE_RS22575 adf70c1a02f7acffeaef4d8d4f13caa8 386 PANTHER PTHR10277 10 378 2.7E-121 T 23-04-2016 RPE_RS16665 221d6c4a4c5c403ab8e65f88b61d1096 350 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 56 299 2.2E-13 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RPE_RS16665 221d6c4a4c5c403ab8e65f88b61d1096 350 SUPERFAMILY SSF111369 155 288 2.09E-8 T 23-04-2016 RPE_RS16665 221d6c4a4c5c403ab8e65f88b61d1096 350 PANTHER PTHR32347 45 342 2.4E-46 T 23-04-2016 RPE_RS16665 221d6c4a4c5c403ab8e65f88b61d1096 350 Pfam PF00529 HlyD membrane-fusion protein of T1SS 38 297 3.2E-7 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RPE_RS16665 221d6c4a4c5c403ab8e65f88b61d1096 350 PANTHER PTHR32347:SF16 45 342 2.4E-46 T 23-04-2016 RPE_RS16665 221d6c4a4c5c403ab8e65f88b61d1096 350 Gene3D G3DSA:2.40.50.100 216 249 1.3E-11 T 23-04-2016 RPE_RS16665 221d6c4a4c5c403ab8e65f88b61d1096 350 Gene3D G3DSA:2.40.50.100 58 89 1.3E-11 T 23-04-2016 RPE_RS14405 dfdbcd71a66f0a33cf7e6a8d883fccc0 518 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 12 489 2.8E-153 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RPE_RS14405 dfdbcd71a66f0a33cf7e6a8d883fccc0 518 PRINTS PR01041 Methionyl-tRNA synthetase signature 232 243 1.8E-34 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RPE_RS14405 dfdbcd71a66f0a33cf7e6a8d883fccc0 518 PRINTS PR01041 Methionyl-tRNA synthetase signature 264 279 1.8E-34 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RPE_RS14405 dfdbcd71a66f0a33cf7e6a8d883fccc0 518 PRINTS PR01041 Methionyl-tRNA synthetase signature 13 26 1.8E-34 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RPE_RS14405 dfdbcd71a66f0a33cf7e6a8d883fccc0 518 PRINTS PR01041 Methionyl-tRNA synthetase signature 45 59 1.8E-34 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RPE_RS14405 dfdbcd71a66f0a33cf7e6a8d883fccc0 518 PRINTS PR01041 Methionyl-tRNA synthetase signature 356 367 1.8E-34 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RPE_RS14405 dfdbcd71a66f0a33cf7e6a8d883fccc0 518 PRINTS PR01041 Methionyl-tRNA synthetase signature 93 104 1.8E-34 T 23-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RPE_RS14405 dfdbcd71a66f0a33cf7e6a8d883fccc0 518 SUPERFAMILY SSF52374 8 359 4.83E-108 T 23-04-2016 RPE_RS14405 dfdbcd71a66f0a33cf7e6a8d883fccc0 518 SUPERFAMILY SSF47323 357 511 2.43E-36 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS14405 dfdbcd71a66f0a33cf7e6a8d883fccc0 518 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 20 29 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS14405 dfdbcd71a66f0a33cf7e6a8d883fccc0 518 Gene3D G3DSA:3.40.50.620 8 119 1.2E-73 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS14405 dfdbcd71a66f0a33cf7e6a8d883fccc0 518 Gene3D G3DSA:3.40.50.620 234 342 1.2E-73 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS14405 dfdbcd71a66f0a33cf7e6a8d883fccc0 518 Hamap MF_01228 Methionine--tRNA ligase [metG]. 1 513 46.565 T 23-04-2016 IPR023457 Methionine-tRNA synthetase, type 2 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RPE_RS14405 dfdbcd71a66f0a33cf7e6a8d883fccc0 518 Gene3D G3DSA:1.10.730.10 346 511 1.6E-52 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS14405 dfdbcd71a66f0a33cf7e6a8d883fccc0 518 PANTHER PTHR11946:SF1 8 512 1.1E-239 T 23-04-2016 RPE_RS14405 dfdbcd71a66f0a33cf7e6a8d883fccc0 518 Gene3D G3DSA:2.170.220.10 122 233 1.4E-45 T 23-04-2016 RPE_RS14405 dfdbcd71a66f0a33cf7e6a8d883fccc0 518 Pfam PF09334 tRNA synthetases class I (M) 11 368 4.2E-111 T 23-04-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS14405 dfdbcd71a66f0a33cf7e6a8d883fccc0 518 PANTHER PTHR11946 8 512 1.1E-239 T 23-04-2016 RPE_RS01210 18dbda4294a100015076b009765b48da 455 PANTHER PTHR16943:SF8 1 444 2.5E-163 T 23-04-2016 RPE_RS01210 18dbda4294a100015076b009765b48da 455 PANTHER PTHR16943 1 444 2.5E-163 T 23-04-2016 IPR005656 MmgE/PrpD GO:0016829 RPE_RS01210 18dbda4294a100015076b009765b48da 455 Pfam PF03972 MmgE/PrpD family 5 439 9.5E-113 T 23-04-2016 IPR005656 MmgE/PrpD GO:0016829 RPE_RS01210 18dbda4294a100015076b009765b48da 455 SUPERFAMILY SSF103378 3 447 2.88E-107 T 23-04-2016 IPR005656 MmgE/PrpD GO:0016829 RPE_RS01210 18dbda4294a100015076b009765b48da 455 Gene3D G3DSA:3.30.1330.120 270 394 1.8E-22 T 23-04-2016 RPE_RS19320 fba80e55aa2dc12c79d0fbc230e7e1c4 254 Pfam PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) 48 241 2.2E-30 T 23-04-2016 IPR019108 Cytochrome c oxidase caa3-type, assembly factor CtaG-related RPE_RS20940 147c4aaa15290ab9c63cee2ef8f2d22f 864 Pfam PF00271 Helicase conserved C-terminal domain 488 591 2.3E-17 T 23-04-2016 IPR001650 Helicase, C-terminal RPE_RS20940 147c4aaa15290ab9c63cee2ef8f2d22f 864 Gene3D G3DSA:3.40.50.300 434 455 7.8E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS20940 147c4aaa15290ab9c63cee2ef8f2d22f 864 Gene3D G3DSA:3.40.50.300 54 135 7.8E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS20940 147c4aaa15290ab9c63cee2ef8f2d22f 864 Gene3D G3DSA:3.40.50.300 324 384 7.8E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS20940 147c4aaa15290ab9c63cee2ef8f2d22f 864 Pfam PF12344 Ultra-violet resistance protein B 598 639 1.2E-23 T 23-04-2016 IPR024759 UvrB, YAD/RRR-motif-containing domain RPE_RS20940 147c4aaa15290ab9c63cee2ef8f2d22f 864 Hamap MF_00204 UvrABC system protein B [uvrB]. 49 712 41.49 T 23-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 RPE_RS20940 147c4aaa15290ab9c63cee2ef8f2d22f 864 SMART SM00490 506 592 2.0E-17 T 23-04-2016 IPR001650 Helicase, C-terminal RPE_RS20940 147c4aaa15290ab9c63cee2ef8f2d22f 864 SUPERFAMILY SSF52540 51 461 3.23E-128 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS20940 147c4aaa15290ab9c63cee2ef8f2d22f 864 SUPERFAMILY SSF52540 505 626 6.36E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS20940 147c4aaa15290ab9c63cee2ef8f2d22f 864 Pfam PF02151 UvrB/uvrC motif 678 711 1.6E-9 T 23-04-2016 IPR001943 UVR domain GO:0005515 RPE_RS20940 147c4aaa15290ab9c63cee2ef8f2d22f 864 Gene3D G3DSA:3.30.2060.10 206 285 1.3E-13 T 23-04-2016 RPE_RS20940 147c4aaa15290ab9c63cee2ef8f2d22f 864 Gene3D G3DSA:4.10.860.10 673 714 7.3E-16 T 23-04-2016 IPR001943 UVR domain GO:0005515 RPE_RS20940 147c4aaa15290ab9c63cee2ef8f2d22f 864 SMART SM00487 55 472 1.3E-21 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RPE_RS20940 147c4aaa15290ab9c63cee2ef8f2d22f 864 PANTHER PTHR24029 45 734 0.0 T 23-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 RPE_RS20940 147c4aaa15290ab9c63cee2ef8f2d22f 864 Pfam PF04851 Type III restriction enzyme, res subunit 58 185 4.7E-12 T 23-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 RPE_RS20940 147c4aaa15290ab9c63cee2ef8f2d22f 864 SUPERFAMILY SSF46600 672 711 6.8E-10 T 23-04-2016 IPR001943 UVR domain GO:0005515 RPE_RS20940 147c4aaa15290ab9c63cee2ef8f2d22f 864 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 51 710 1.7E-304 T 23-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 RPE_RS20940 147c4aaa15290ab9c63cee2ef8f2d22f 864 Gene3D G3DSA:3.40.50.300 472 626 1.6E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS20940 147c4aaa15290ab9c63cee2ef8f2d22f 864 SUPERFAMILY SSF52540 80 128 6.36E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS23450 6564ff1b9b92ce8ea3a9144feb21ed58 437 Gene3D G3DSA:1.10.1060.10 20 111 2.8E-22 T 23-04-2016 RPE_RS23450 6564ff1b9b92ce8ea3a9144feb21ed58 437 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 25 36 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RPE_RS23450 6564ff1b9b92ce8ea3a9144feb21ed58 437 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 76 87 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RPE_RS23450 6564ff1b9b92ce8ea3a9144feb21ed58 437 Pfam PF12838 4Fe-4S dicluster domain 24 90 2.4E-12 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RPE_RS23450 6564ff1b9b92ce8ea3a9144feb21ed58 437 SUPERFAMILY SSF52402 355 434 4.02E-5 T 23-04-2016 RPE_RS23450 6564ff1b9b92ce8ea3a9144feb21ed58 437 SUPERFAMILY SSF54862 22 118 6.7E-20 T 23-04-2016 RPE_RS23450 6564ff1b9b92ce8ea3a9144feb21ed58 437 PANTHER PTHR32479 14 413 2.0E-136 T 23-04-2016 RPE_RS23450 6564ff1b9b92ce8ea3a9144feb21ed58 437 Pfam PF02754 Cysteine-rich domain 194 280 1.5E-10 T 23-04-2016 IPR004017 Cysteine-rich domain RPE_RS23450 6564ff1b9b92ce8ea3a9144feb21ed58 437 Pfam PF02754 Cysteine-rich domain 327 410 2.1E-10 T 23-04-2016 IPR004017 Cysteine-rich domain RPE_RS23450 6564ff1b9b92ce8ea3a9144feb21ed58 437 PANTHER PTHR32479:SF2 14 413 2.0E-136 T 23-04-2016 RPE_RS23450 6564ff1b9b92ce8ea3a9144feb21ed58 437 PIRSF PIRSF000139 5 433 7.9E-132 T 23-04-2016 IPR012257 Glycolate oxidase, iron-sulphur subunit RPE_RS02515 6953112aea93685fc98e731141527dbd 265 SUPERFAMILY SSF53474 26 264 2.7E-38 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS02515 6953112aea93685fc98e731141527dbd 265 Pfam PF12146 Serine aminopeptidase, S33 62 160 1.1E-9 T 23-04-2016 IPR022742 Serine aminopeptidase, S33 RPE_RS02515 6953112aea93685fc98e731141527dbd 265 Gene3D G3DSA:3.40.50.1820 198 265 9.1E-36 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS02515 6953112aea93685fc98e731141527dbd 265 Gene3D G3DSA:3.40.50.1820 35 151 9.1E-36 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS02515 6953112aea93685fc98e731141527dbd 265 PANTHER PTHR16138 22 263 9.0E-100 T 23-04-2016 RPE_RS08850 c94bf3a05ab9eac5b6109b7b87eb16c3 335 SUPERFAMILY SSF53850 25 331 3.04E-73 T 23-04-2016 RPE_RS08850 c94bf3a05ab9eac5b6109b7b87eb16c3 335 Pfam PF13531 Bacterial extracellular solute-binding protein 44 282 1.0E-39 T 23-04-2016 RPE_RS08850 c94bf3a05ab9eac5b6109b7b87eb16c3 335 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 26 331 2.8E-132 T 23-04-2016 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 RPE_RS08850 c94bf3a05ab9eac5b6109b7b87eb16c3 335 PANTHER PTHR30368:SF1 27 335 8.3E-170 T 23-04-2016 RPE_RS08850 c94bf3a05ab9eac5b6109b7b87eb16c3 335 PANTHER PTHR30368 27 335 8.3E-170 T 23-04-2016 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 RPE_RS08850 c94bf3a05ab9eac5b6109b7b87eb16c3 335 Gene3D G3DSA:3.40.190.10 167 300 1.3E-23 T 23-04-2016 RPE_RS08850 c94bf3a05ab9eac5b6109b7b87eb16c3 335 Gene3D G3DSA:3.40.190.10 26 166 7.4E-45 T 23-04-2016 RPE_RS08850 c94bf3a05ab9eac5b6109b7b87eb16c3 335 ProSitePatterns PS00401 Prokaryotic sulfate-binding proteins signature 1. 53 65 - T 23-04-2016 IPR000957 Sulphate/thiosulphate-binding, conserved site GO:0008271|GO:0008272|GO:0030288 RPE_RS10355 df603951e7ae3569e98ef25b1dea6d30 70 PANTHER PTHR37029:SF1 1 58 2.6E-12 T 23-04-2016 RPE_RS10355 df603951e7ae3569e98ef25b1dea6d30 70 PANTHER PTHR37029 1 58 2.6E-12 T 23-04-2016 RPE_RS10355 df603951e7ae3569e98ef25b1dea6d30 70 Pfam PF10049 Protein of unknown function (DUF2283) 3 50 1.5E-18 T 23-04-2016 IPR019270 Protein of unknown function DUF2283 RPE_RS17220 ea7424db8758ffb42fa1fd5bc02dc0bd 80 SUPERFAMILY SSF101801 4 77 2.88E-17 T 23-04-2016 IPR001543 Surface presentation of antigen (SpoA) RPE_RS17220 ea7424db8758ffb42fa1fd5bc02dc0bd 80 PRINTS PR00956 Flagellar motor switch protein FliN signature 20 36 2.5E-10 T 23-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RPE_RS17220 ea7424db8758ffb42fa1fd5bc02dc0bd 80 PRINTS PR00956 Flagellar motor switch protein FliN signature 36 49 2.5E-10 T 23-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RPE_RS17220 ea7424db8758ffb42fa1fd5bc02dc0bd 80 PRINTS PR00956 Flagellar motor switch protein FliN signature 3 19 2.5E-10 T 23-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RPE_RS17220 ea7424db8758ffb42fa1fd5bc02dc0bd 80 PRINTS PR00956 Flagellar motor switch protein FliN signature 49 64 2.5E-10 T 23-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RPE_RS17220 ea7424db8758ffb42fa1fd5bc02dc0bd 80 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 5 73 9.8E-18 T 23-04-2016 IPR001543 Surface presentation of antigen (SpoA) RPE_RS17220 ea7424db8758ffb42fa1fd5bc02dc0bd 80 Gene3D G3DSA:2.30.330.10 3 76 3.5E-19 T 23-04-2016 RPE_RS17220 ea7424db8758ffb42fa1fd5bc02dc0bd 80 PANTHER PTHR41277 1 80 7.1E-28 T 23-04-2016 RPE_RS09200 33b444663357f362a83c5688e1db002d 478 PANTHER PTHR35369 1 467 3.0E-126 T 23-04-2016 RPE_RS09200 33b444663357f362a83c5688e1db002d 478 SUPERFAMILY SSF56672 1 190 3.78E-37 T 23-04-2016 RPE_RS09200 33b444663357f362a83c5688e1db002d 478 PANTHER PTHR35369:SF2 1 467 3.0E-126 T 23-04-2016 RPE_RS09200 33b444663357f362a83c5688e1db002d 478 Pfam PF00817 impB/mucB/samB family 1 113 1.4E-8 T 23-04-2016 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RPE_RS09200 33b444663357f362a83c5688e1db002d 478 Gene3D G3DSA:1.10.150.20 123 188 1.1E-7 T 23-04-2016 RPE_RS16720 c7321bc12c726414431c062118afc08e 133 PANTHER PTHR23091 24 127 1.5E-12 T 23-04-2016 RPE_RS16720 c7321bc12c726414431c062118afc08e 133 SUPERFAMILY SSF55729 22 113 1.99E-20 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS16720 c7321bc12c726414431c062118afc08e 133 Pfam PF00583 Acetyltransferase (GNAT) family 30 105 6.8E-12 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RPE_RS16720 c7321bc12c726414431c062118afc08e 133 Gene3D G3DSA:3.40.630.30 10 127 8.5E-21 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS18760 a0de01a416314345eb6a4a6d141ae18b 486 Pfam PF00263 Bacterial type II and III secretion system protein 261 433 5.8E-42 T 23-04-2016 IPR004846 Type II/III secretion system GO:0009306 RPE_RS18760 a0de01a416314345eb6a4a6d141ae18b 486 Pfam PF04972 BON domain 128 187 1.2E-9 T 23-04-2016 IPR007055 BON domain RPE_RS18760 a0de01a416314345eb6a4a6d141ae18b 486 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 378 411 - T 23-04-2016 IPR004845 Type II secretion system GspD, conserved site GO:0008565 RPE_RS18760 a0de01a416314345eb6a4a6d141ae18b 486 PRINTS PR00811 Bacterial general secretion pathway protein D signature 397 415 1.1E-11 T 23-04-2016 IPR001775 GspD/PilQ family RPE_RS18760 a0de01a416314345eb6a4a6d141ae18b 486 PRINTS PR00811 Bacterial general secretion pathway protein D signature 191 201 1.1E-11 T 23-04-2016 IPR001775 GspD/PilQ family RPE_RS18760 a0de01a416314345eb6a4a6d141ae18b 486 PRINTS PR00811 Bacterial general secretion pathway protein D signature 257 281 1.1E-11 T 23-04-2016 IPR001775 GspD/PilQ family RPE_RS18760 a0de01a416314345eb6a4a6d141ae18b 486 PRINTS PR00811 Bacterial general secretion pathway protein D signature 420 434 1.1E-11 T 23-04-2016 IPR001775 GspD/PilQ family RPE_RS18760 a0de01a416314345eb6a4a6d141ae18b 486 PANTHER PTHR30332:SF6 59 486 1.3E-200 T 23-04-2016 RPE_RS18760 a0de01a416314345eb6a4a6d141ae18b 486 PANTHER PTHR30332 59 486 1.3E-200 T 23-04-2016 RPE_RS18760 a0de01a416314345eb6a4a6d141ae18b 486 Pfam PF13629 Pilus formation protein N terminal region 55 122 2.6E-19 T 23-04-2016 IPR032789 Pilus formation protein, N-terminal RPE_RS15185 647dde68121277f494c1617d61d2ea58 252 SUPERFAMILY SSF51306 31 250 9.42E-63 T 23-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C RPE_RS15185 647dde68121277f494c1617d61d2ea58 252 PANTHER PTHR12383:SF27 15 65 1.5E-77 T 23-04-2016 RPE_RS15185 647dde68121277f494c1617d61d2ea58 252 PANTHER PTHR12383:SF27 82 149 1.5E-77 T 23-04-2016 RPE_RS15185 647dde68121277f494c1617d61d2ea58 252 PANTHER PTHR12383:SF27 165 226 1.5E-77 T 23-04-2016 RPE_RS15185 647dde68121277f494c1617d61d2ea58 252 PANTHER PTHR12383 15 65 1.5E-77 T 23-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RPE_RS15185 647dde68121277f494c1617d61d2ea58 252 PANTHER PTHR12383 82 149 1.5E-77 T 23-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RPE_RS15185 647dde68121277f494c1617d61d2ea58 252 PANTHER PTHR12383 165 226 1.5E-77 T 23-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RPE_RS15185 647dde68121277f494c1617d61d2ea58 252 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 183 202 1.2E-22 T 23-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RPE_RS15185 647dde68121277f494c1617d61d2ea58 252 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 33 49 1.2E-22 T 23-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RPE_RS15185 647dde68121277f494c1617d61d2ea58 252 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 103 115 1.2E-22 T 23-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RPE_RS15185 647dde68121277f494c1617d61d2ea58 252 Gene3D G3DSA:2.10.109.10 29 113 2.0E-46 T 23-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain RPE_RS15185 647dde68121277f494c1617d61d2ea58 252 Gene3D G3DSA:2.10.109.10 183 237 2.0E-46 T 23-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain RPE_RS15185 647dde68121277f494c1617d61d2ea58 252 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 17 226 2.7E-50 T 23-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RPE_RS15185 647dde68121277f494c1617d61d2ea58 252 Pfam PF00717 Peptidase S24-like 40 126 1.4E-21 T 23-04-2016 IPR019759 Peptidase S24/S26A/S26B RPE_RS15185 647dde68121277f494c1617d61d2ea58 252 ProSitePatterns PS00760 Signal peptidases I lysine active site. 105 117 - T 23-04-2016 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 RPE_RS15185 647dde68121277f494c1617d61d2ea58 252 ProSitePatterns PS00761 Signal peptidases I signature 3. 188 201 - T 23-04-2016 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 RPE_RS13355 4d019f18632a96134a54f134e7a8d8f9 560 SUPERFAMILY SSF52540 160 551 8.85E-93 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS13355 4d019f18632a96134a54f134e7a8d8f9 560 PANTHER PTHR30258:SF2 72 560 1.6E-165 T 23-04-2016 RPE_RS13355 4d019f18632a96134a54f134e7a8d8f9 560 Gene3D G3DSA:3.40.50.300 282 552 1.7E-95 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS13355 4d019f18632a96134a54f134e7a8d8f9 560 Gene3D G3DSA:3.30.450.90 150 275 1.9E-38 T 23-04-2016 RPE_RS13355 4d019f18632a96134a54f134e7a8d8f9 560 SMART SM00382 303 424 1.4E-4 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS13355 4d019f18632a96134a54f134e7a8d8f9 560 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 370 384 - T 23-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 RPE_RS13355 4d019f18632a96134a54f134e7a8d8f9 560 Pfam PF00437 Type II/IV secretion system protein 180 442 5.4E-72 T 23-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 RPE_RS13355 4d019f18632a96134a54f134e7a8d8f9 560 SUPERFAMILY SSF160246 34 135 4.71E-16 T 23-04-2016 RPE_RS13355 4d019f18632a96134a54f134e7a8d8f9 560 PANTHER PTHR30258 72 560 1.6E-165 T 23-04-2016 RPE_RS13355 4d019f18632a96134a54f134e7a8d8f9 560 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 43 134 2.4E-8 T 23-04-2016 IPR007831 General secretory system II, protein E, N-terminal GO:0005524|GO:0006810 RPE_RS07140 b606694d4a3a30a6459eb88e9feac9e3 446 Gene3D G3DSA:3.30.830.10 254 427 2.9E-33 T 23-04-2016 IPR011237 Peptidase M16 domain GO:0046872 RPE_RS07140 b606694d4a3a30a6459eb88e9feac9e3 446 PANTHER PTHR11851:SF140 23 427 6.1E-57 T 23-04-2016 RPE_RS07140 b606694d4a3a30a6459eb88e9feac9e3 446 Gene3D G3DSA:3.30.830.10 23 236 5.2E-46 T 23-04-2016 IPR011237 Peptidase M16 domain GO:0046872 RPE_RS07140 b606694d4a3a30a6459eb88e9feac9e3 446 Pfam PF05193 Peptidase M16 inactive domain 186 362 5.7E-31 T 23-04-2016 IPR007863 Peptidase M16, C-terminal RPE_RS07140 b606694d4a3a30a6459eb88e9feac9e3 446 SUPERFAMILY SSF63411 21 232 2.07E-45 T 23-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RPE_RS07140 b606694d4a3a30a6459eb88e9feac9e3 446 Pfam PF00675 Insulinase (Peptidase family M16) 52 144 1.7E-7 T 23-04-2016 IPR011765 Peptidase M16, N-terminal RPE_RS07140 b606694d4a3a30a6459eb88e9feac9e3 446 SUPERFAMILY SSF63411 246 432 2.87E-44 T 23-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RPE_RS07140 b606694d4a3a30a6459eb88e9feac9e3 446 PANTHER PTHR11851 23 427 6.1E-57 T 23-04-2016 RPE_RS14890 3c74252ef6cddb18c61605a87bcf28d8 415 Pfam PF00266 Aminotransferase class-V 34 403 3.8E-141 T 23-04-2016 IPR000192 Aminotransferase class V domain RPE_RS14890 3c74252ef6cddb18c61605a87bcf28d8 415 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 226 245 - T 23-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site RPE_RS14890 3c74252ef6cddb18c61605a87bcf28d8 415 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 16 414 1.7E-175 T 23-04-2016 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 RPE_RS14890 3c74252ef6cddb18c61605a87bcf28d8 415 Gene3D G3DSA:3.40.640.10 45 292 1.7E-85 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS14890 3c74252ef6cddb18c61605a87bcf28d8 415 PANTHER PTHR11601 15 415 2.5E-185 T 23-04-2016 RPE_RS14890 3c74252ef6cddb18c61605a87bcf28d8 415 SUPERFAMILY SSF53383 12 411 2.69E-124 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS14890 3c74252ef6cddb18c61605a87bcf28d8 415 PIRSF PIRSF005572 31 414 4.4E-48 T 23-04-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 RPE_RS14890 3c74252ef6cddb18c61605a87bcf28d8 415 PANTHER PTHR11601:SF17 15 415 2.5E-185 T 23-04-2016 RPE_RS14890 3c74252ef6cddb18c61605a87bcf28d8 415 Gene3D G3DSA:3.90.1150.10 293 407 8.5E-28 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS08785 5cab148654169efd9bf609ba036e1708 210 Hamap MF_01389 Urease accessory protein UreG [ureG]. 6 204 46.955 T 23-04-2016 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 RPE_RS08785 5cab148654169efd9bf609ba036e1708 210 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 10 180 5.2E-38 T 23-04-2016 IPR003495 CobW/HypB/UreG, nucleotide-binding domain RPE_RS08785 5cab148654169efd9bf609ba036e1708 210 TIGRFAM TIGR00101 ureG: urease accessory protein UreG 8 200 3.9E-103 T 23-04-2016 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 RPE_RS08785 5cab148654169efd9bf609ba036e1708 210 PANTHER PTHR31715 7 210 8.1E-126 T 23-04-2016 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 RPE_RS08785 5cab148654169efd9bf609ba036e1708 210 PIRSF PIRSF005624 2 209 1.5E-47 T 23-04-2016 RPE_RS08785 5cab148654169efd9bf609ba036e1708 210 Gene3D G3DSA:3.40.50.300 8 198 2.3E-21 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS08785 5cab148654169efd9bf609ba036e1708 210 SUPERFAMILY SSF52540 3 199 4.5E-37 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS04265 4b3812009e3f380c60c1ddf912250c84 525 PANTHER PTHR24096 1 516 2.6E-223 T 23-04-2016 RPE_RS04265 4b3812009e3f380c60c1ddf912250c84 525 SUPERFAMILY SSF56801 6 518 4.45E-156 T 23-04-2016 RPE_RS04265 4b3812009e3f380c60c1ddf912250c84 525 Gene3D G3DSA:3.30.300.30 417 516 3.0E-30 T 23-04-2016 RPE_RS04265 4b3812009e3f380c60c1ddf912250c84 525 PANTHER PTHR24096:SF229 1 516 2.6E-223 T 23-04-2016 RPE_RS04265 4b3812009e3f380c60c1ddf912250c84 525 Gene3D G3DSA:3.40.50.980 8 180 1.1E-39 T 23-04-2016 RPE_RS04265 4b3812009e3f380c60c1ddf912250c84 525 Gene3D G3DSA:2.30.38.10 343 413 5.4E-27 T 23-04-2016 RPE_RS04265 4b3812009e3f380c60c1ddf912250c84 525 Gene3D G3DSA:3.40.50.980 181 342 1.0E-37 T 23-04-2016 RPE_RS04265 4b3812009e3f380c60c1ddf912250c84 525 ProSitePatterns PS00455 Putative AMP-binding domain signature. 175 186 - T 23-04-2016 IPR020845 AMP-binding, conserved site RPE_RS04265 4b3812009e3f380c60c1ddf912250c84 525 Pfam PF00501 AMP-binding enzyme 15 422 7.0E-103 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS04265 4b3812009e3f380c60c1ddf912250c84 525 Pfam PF13193 AMP-binding enzyme C-terminal domain 431 506 1.5E-18 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RPE_RS16040 a73b1d3e7023991dfb5694170d5710cd 589 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 187 324 2.1E-32 T 23-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RPE_RS16040 a73b1d3e7023991dfb5694170d5710cd 589 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 404 556 7.9E-26 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RPE_RS16040 a73b1d3e7023991dfb5694170d5710cd 589 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 441 460 - T 23-04-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 RPE_RS16040 a73b1d3e7023991dfb5694170d5710cd 589 Gene3D G3DSA:3.40.50.970 1 174 1.2E-47 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS16040 a73b1d3e7023991dfb5694170d5710cd 589 TIGRFAM TIGR03457 sulphoacet_xsc: sulfoacetaldehyde acetyltransferase 2 577 1.6E-277 T 23-04-2016 IPR017820 Sulphoacetaldehyde acetyltransferase GO:0000287|GO:0005737|GO:0019529|GO:0030976|GO:0050487 KEGG: 00430+2.3.3.15|MetaCyc: PWY-1281|MetaCyc: PWY-6637|UniPathway: UPA00336 RPE_RS16040 a73b1d3e7023991dfb5694170d5710cd 589 PANTHER PTHR18968 1 559 2.5E-99 T 23-04-2016 RPE_RS16040 a73b1d3e7023991dfb5694170d5710cd 589 SUPERFAMILY SSF52518 381 576 1.14E-41 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS16040 a73b1d3e7023991dfb5694170d5710cd 589 Gene3D G3DSA:3.40.50.1220 179 334 7.8E-49 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RPE_RS16040 a73b1d3e7023991dfb5694170d5710cd 589 SUPERFAMILY SSF52518 1 175 2.4E-41 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS16040 a73b1d3e7023991dfb5694170d5710cd 589 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 3 168 1.7E-40 T 23-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RPE_RS16040 a73b1d3e7023991dfb5694170d5710cd 589 Gene3D G3DSA:3.40.50.970 370 565 5.8E-45 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS16040 a73b1d3e7023991dfb5694170d5710cd 589 SUPERFAMILY SSF52467 153 354 5.58E-39 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RPE_RS14440 24930c996e7b5eb33b9e844a80bfa966 549 PANTHER PTHR24095:SF169 9 542 4.1E-250 T 23-04-2016 RPE_RS14440 24930c996e7b5eb33b9e844a80bfa966 549 Gene3D G3DSA:3.30.300.30 445 543 7.4E-31 T 23-04-2016 RPE_RS14440 24930c996e7b5eb33b9e844a80bfa966 549 Gene3D G3DSA:3.40.50.980 23 135 2.2E-31 T 23-04-2016 RPE_RS14440 24930c996e7b5eb33b9e844a80bfa966 549 Gene3D G3DSA:3.40.50.980 176 200 2.2E-31 T 23-04-2016 RPE_RS14440 24930c996e7b5eb33b9e844a80bfa966 549 ProSitePatterns PS00455 Putative AMP-binding domain signature. 191 202 - T 23-04-2016 IPR020845 AMP-binding, conserved site RPE_RS14440 24930c996e7b5eb33b9e844a80bfa966 549 Gene3D G3DSA:2.30.38.10 364 438 5.6E-20 T 23-04-2016 RPE_RS14440 24930c996e7b5eb33b9e844a80bfa966 549 PANTHER PTHR24095 9 542 4.1E-250 T 23-04-2016 RPE_RS14440 24930c996e7b5eb33b9e844a80bfa966 549 SUPERFAMILY SSF56801 16 543 3.92E-137 T 23-04-2016 RPE_RS14440 24930c996e7b5eb33b9e844a80bfa966 549 Pfam PF00501 AMP-binding enzyme 29 448 6.0E-88 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS14440 24930c996e7b5eb33b9e844a80bfa966 549 Gene3D G3DSA:3.40.50.980 201 341 9.0E-26 T 23-04-2016 RPE_RS14440 24930c996e7b5eb33b9e844a80bfa966 549 Pfam PF13193 AMP-binding enzyme C-terminal domain 457 531 4.2E-20 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RPE_RS15865 c63aceee05f09263a45e07e6c3ed9e23 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 253 1.1E-79 T 23-04-2016 RPE_RS15865 c63aceee05f09263a45e07e6c3ed9e23 256 PANTHER PTHR24322 13 144 3.3E-42 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS15865 c63aceee05f09263a45e07e6c3ed9e23 256 PANTHER PTHR24322 160 191 3.3E-42 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS15865 c63aceee05f09263a45e07e6c3ed9e23 256 PANTHER PTHR24322:SF317 13 144 3.3E-42 T 23-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RPE_RS15865 c63aceee05f09263a45e07e6c3ed9e23 256 PANTHER PTHR24322:SF317 160 191 3.3E-42 T 23-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RPE_RS15865 c63aceee05f09263a45e07e6c3ed9e23 256 PIRSF PIRSF000094 3 256 7.2E-85 T 23-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RPE_RS15865 c63aceee05f09263a45e07e6c3ed9e23 256 SUPERFAMILY SSF51735 8 255 1.62E-64 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS15865 c63aceee05f09263a45e07e6c3ed9e23 256 Gene3D G3DSA:3.40.50.720 4 254 7.7E-65 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS15865 c63aceee05f09263a45e07e6c3ed9e23 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 4.8E-13 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS15865 c63aceee05f09263a45e07e6c3ed9e23 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 4.8E-13 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS15865 c63aceee05f09263a45e07e6c3ed9e23 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 4.8E-13 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS15865 c63aceee05f09263a45e07e6c3ed9e23 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 4.8E-13 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS15350 ad2c85cc399b325100042d16d69a2fd4 503 SUPERFAMILY SSF50800 197 302 9.59E-7 T 23-04-2016 IPR011037 Pyruvate kinase-like, insert domain RPE_RS15350 ad2c85cc399b325100042d16d69a2fd4 503 SUPERFAMILY SSF51621 304 480 5.58E-64 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RPE_RS15350 ad2c85cc399b325100042d16d69a2fd4 503 SUPERFAMILY SSF51621 104 202 5.58E-64 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RPE_RS15350 ad2c85cc399b325100042d16d69a2fd4 503 PRINTS PR01050 Pyruvate kinase family signature 413 437 1.4E-13 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS15350 ad2c85cc399b325100042d16d69a2fd4 503 PRINTS PR01050 Pyruvate kinase family signature 186 202 1.4E-13 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS15350 ad2c85cc399b325100042d16d69a2fd4 503 PRINTS PR01050 Pyruvate kinase family signature 388 412 1.4E-13 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS15350 ad2c85cc399b325100042d16d69a2fd4 503 PANTHER PTHR11817 122 491 3.4E-102 T 23-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS15350 ad2c85cc399b325100042d16d69a2fd4 503 Pfam PF00224 Pyruvate kinase, barrel domain 140 463 1.5E-45 T 23-04-2016 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS15350 ad2c85cc399b325100042d16d69a2fd4 503 Gene3D G3DSA:2.40.33.10 200 305 1.4E-9 T 23-04-2016 IPR015806 Pyruvate kinase, beta-barrel insert domain GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS15350 ad2c85cc399b325100042d16d69a2fd4 503 Gene3D G3DSA:3.20.20.60 306 470 4.1E-61 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RPE_RS15350 ad2c85cc399b325100042d16d69a2fd4 503 Gene3D G3DSA:3.20.20.60 128 199 4.1E-61 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RPE_RS15350 ad2c85cc399b325100042d16d69a2fd4 503 PANTHER PTHR11817:SF28 122 491 3.4E-102 T 23-04-2016 RPE_RS08400 6f812f5b638a7ab2af39c4402624c064 311 Gene3D G3DSA:3.40.50.300 5 230 3.1E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS08400 6f812f5b638a7ab2af39c4402624c064 311 SUPERFAMILY SSF52540 9 229 3.22E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS08400 6f812f5b638a7ab2af39c4402624c064 311 SMART SM00382 34 231 7.8E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS08400 6f812f5b638a7ab2af39c4402624c064 311 PANTHER PTHR24220:SF0 11 232 2.6E-99 T 23-04-2016 RPE_RS08400 6f812f5b638a7ab2af39c4402624c064 311 Pfam PF00005 ABC transporter 26 167 8.1E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS08400 6f812f5b638a7ab2af39c4402624c064 311 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS08400 6f812f5b638a7ab2af39c4402624c064 311 PANTHER PTHR24220 11 232 2.6E-99 T 23-04-2016 RPE_RS07925 8567b752fa949e301b63c681cb59c1c6 235 Gene3D G3DSA:1.10.357.10 33 223 5.4E-34 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RPE_RS07925 8567b752fa949e301b63c681cb59c1c6 235 Pfam PF00440 Bacterial regulatory proteins, tetR family 45 90 1.1E-6 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS07925 8567b752fa949e301b63c681cb59c1c6 235 PANTHER PTHR30055 41 214 1.1E-47 T 23-04-2016 RPE_RS07925 8567b752fa949e301b63c681cb59c1c6 235 SUPERFAMILY SSF46689 33 106 1.9E-13 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS07925 8567b752fa949e301b63c681cb59c1c6 235 Pfam PF13305 WHG domain 119 206 1.4E-14 T 23-04-2016 IPR025996 WHG domain RPE_RS07925 8567b752fa949e301b63c681cb59c1c6 235 SUPERFAMILY SSF48498 119 230 1.63E-17 T 23-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RPE_RS07925 8567b752fa949e301b63c681cb59c1c6 235 PANTHER PTHR30055:SF23 41 214 1.1E-47 T 23-04-2016 RPE_RS23585 2dbf4d865d8ad214b64eab17400ac4b4 229 Gene3D G3DSA:3.20.20.70 8 209 1.5E-21 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS23585 2dbf4d865d8ad214b64eab17400ac4b4 229 Pfam PF02581 Thiamine monophosphate synthase/TENI 14 187 2.3E-15 T 23-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RPE_RS23585 2dbf4d865d8ad214b64eab17400ac4b4 229 SUPERFAMILY SSF51391 9 202 7.85E-28 T 23-04-2016 IPR022998 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RPE_RS08230 67eac51eac18312d9ed9c56926669665 126 Gene3D G3DSA:2.60.120.10 24 113 1.3E-18 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS08230 67eac51eac18312d9ed9c56926669665 126 Pfam PF07883 Cupin domain 44 112 4.8E-16 T 23-04-2016 IPR013096 Cupin 2, conserved barrel RPE_RS08230 67eac51eac18312d9ed9c56926669665 126 SUPERFAMILY SSF51182 38 113 1.95E-18 T 23-04-2016 IPR011051 RmlC-like cupin domain RPE_RS20890 ea9b361a5deae871333fa53451540228 277 SMART SM00563 64 184 4.2E-23 T 23-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 RPE_RS20890 ea9b361a5deae871333fa53451540228 277 SUPERFAMILY SSF69593 8 233 3.66E-23 T 23-04-2016 RPE_RS20890 ea9b361a5deae871333fa53451540228 277 PANTHER PTHR10434 6 193 1.8E-20 T 23-04-2016 RPE_RS20890 ea9b361a5deae871333fa53451540228 277 PANTHER PTHR10434 213 252 1.8E-20 T 23-04-2016 RPE_RS20890 ea9b361a5deae871333fa53451540228 277 Pfam PF01553 Acyltransferase 59 180 1.3E-18 T 23-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 RPE_RS20890 ea9b361a5deae871333fa53451540228 277 Gene3D G3DSA:3.40.1130.10 62 158 6.9E-9 T 23-04-2016 RPE_RS04040 ab976697462e89eeeae04d4d77c4cea2 519 Pfam PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain 15 223 5.6E-30 T 23-04-2016 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 RPE_RS04040 ab976697462e89eeeae04d4d77c4cea2 519 SUPERFAMILY SSF100950 5 229 2.2E-73 T 23-04-2016 RPE_RS04040 ab976697462e89eeeae04d4d77c4cea2 519 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 324 470 4.8E-43 T 23-04-2016 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain RPE_RS04040 ab976697462e89eeeae04d4d77c4cea2 519 PANTHER PTHR21432 5 519 4.0E-267 T 23-04-2016 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 RPE_RS04040 ab976697462e89eeeae04d4d77c4cea2 519 PANTHER PTHR21432:SF10 5 519 4.0E-267 T 23-04-2016 RPE_RS04040 ab976697462e89eeeae04d4d77c4cea2 519 TIGRFAM TIGR03458 YgfH_subfam: succinate CoA transferase 13 498 2.3E-242 T 23-04-2016 IPR017821 Succinate CoA transferase GO:0006084|GO:0016740 RPE_RS04040 ab976697462e89eeeae04d4d77c4cea2 519 Gene3D G3DSA:3.40.810.20 233 497 4.9E-74 T 23-04-2016 RPE_RS04040 ab976697462e89eeeae04d4d77c4cea2 519 SUPERFAMILY SSF100950 233 496 2.6E-80 T 23-04-2016 RPE_RS04040 ab976697462e89eeeae04d4d77c4cea2 519 Gene3D G3DSA:3.40.1080.10 12 228 9.1E-46 T 23-04-2016 RPE_RS04175 8cc56d1333f22be90ec61e44bb5f7e4a 284 SUPERFAMILY SSF53474 46 261 1.09E-48 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS04175 8cc56d1333f22be90ec61e44bb5f7e4a 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 88 103 1.5E-5 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS04175 8cc56d1333f22be90ec61e44bb5f7e4a 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 146 159 1.5E-5 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS04175 8cc56d1333f22be90ec61e44bb5f7e4a 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 132 145 1.5E-5 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS04175 8cc56d1333f22be90ec61e44bb5f7e4a 284 PANTHER PTHR10992 46 262 8.3E-36 T 23-04-2016 RPE_RS04175 8cc56d1333f22be90ec61e44bb5f7e4a 284 Gene3D G3DSA:3.40.50.1820 45 261 1.1E-48 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS04175 8cc56d1333f22be90ec61e44bb5f7e4a 284 Pfam PF00561 alpha/beta hydrolase fold 63 161 1.1E-17 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS12825 94e55fee9c263a7d4dbb06aa5052e53f 252 PANTHER PTHR10291 18 248 5.0E-116 T 23-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 RPE_RS12825 94e55fee9c263a7d4dbb06aa5052e53f 252 Gene3D G3DSA:3.40.1180.10 13 247 2.1E-94 T 23-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 RPE_RS12825 94e55fee9c263a7d4dbb06aa5052e53f 252 Pfam PF01255 Putative undecaprenyl diphosphate synthase 24 244 1.4E-77 T 23-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 RPE_RS12825 94e55fee9c263a7d4dbb06aa5052e53f 252 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 18 244 1.6E-78 T 23-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 RPE_RS12825 94e55fee9c263a7d4dbb06aa5052e53f 252 SUPERFAMILY SSF64005 15 240 1.44E-81 T 23-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 RPE_RS12825 94e55fee9c263a7d4dbb06aa5052e53f 252 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 190 207 - T 23-04-2016 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 RPE_RS12825 94e55fee9c263a7d4dbb06aa5052e53f 252 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 17 245 39.159 T 23-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 RPE_RS07780 a599069001f2a6938b78410349e4c181 1000 Gene3D G3DSA:3.30.565.10 698 865 2.6E-31 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS07780 a599069001f2a6938b78410349e4c181 1000 SMART SM00388 636 701 1.3E-5 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS07780 a599069001f2a6938b78410349e4c181 1000 Pfam PF08448 PAS fold 474 591 1.5E-7 T 23-04-2016 IPR013656 PAS fold-4 RPE_RS07780 a599069001f2a6938b78410349e4c181 1000 PANTHER PTHR24423 335 604 1.6E-160 T 23-04-2016 RPE_RS07780 a599069001f2a6938b78410349e4c181 1000 SUPERFAMILY SSF52172 885 999 3.98E-22 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS07780 a599069001f2a6938b78410349e4c181 1000 SUPERFAMILY SSF55785 453 587 6.46E-16 T 23-04-2016 IPR000014 PAS domain RPE_RS07780 a599069001f2a6938b78410349e4c181 1000 SMART SM00086 547 589 0.0069 T 23-04-2016 IPR001610 PAC motif RPE_RS07780 a599069001f2a6938b78410349e4c181 1000 SMART SM00086 416 456 3.3E-5 T 23-04-2016 IPR001610 PAC motif RPE_RS07780 a599069001f2a6938b78410349e4c181 1000 SUPERFAMILY SSF47384 626 699 8.04E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS07780 a599069001f2a6938b78410349e4c181 1000 SUPERFAMILY SSF55874 692 865 9.43E-33 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS07780 a599069001f2a6938b78410349e4c181 1000 Gene3D G3DSA:3.30.450.20 334 453 1.8E-21 T 23-04-2016 RPE_RS07780 a599069001f2a6938b78410349e4c181 1000 SMART SM00448 884 995 4.5E-21 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS07780 a599069001f2a6938b78410349e4c181 1000 PRINTS PR00344 Bacterial sensor protein C-terminal signature 811 821 1.5E-10 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS07780 a599069001f2a6938b78410349e4c181 1000 PRINTS PR00344 Bacterial sensor protein C-terminal signature 848 861 1.5E-10 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS07780 a599069001f2a6938b78410349e4c181 1000 PRINTS PR00344 Bacterial sensor protein C-terminal signature 793 807 1.5E-10 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS07780 a599069001f2a6938b78410349e4c181 1000 PRINTS PR00344 Bacterial sensor protein C-terminal signature 824 842 1.5E-10 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS07780 a599069001f2a6938b78410349e4c181 1000 Pfam PF08447 PAS fold 367 444 4.2E-10 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 RPE_RS07780 a599069001f2a6938b78410349e4c181 1000 Gene3D G3DSA:3.40.50.2300 883 999 1.8E-26 T 23-04-2016 RPE_RS07780 a599069001f2a6938b78410349e4c181 1000 SUPERFAMILY SSF55785 332 454 3.14E-17 T 23-04-2016 IPR000014 PAS domain RPE_RS07780 a599069001f2a6938b78410349e4c181 1000 PANTHER PTHR24423:SF438 335 604 1.6E-160 T 23-04-2016 RPE_RS07780 a599069001f2a6938b78410349e4c181 1000 SMART SM00387 742 864 9.8E-23 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS07780 a599069001f2a6938b78410349e4c181 1000 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 537 596 1.9E-9 T 23-04-2016 IPR000014 PAS domain RPE_RS07780 a599069001f2a6938b78410349e4c181 1000 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 340 461 7.9E-7 T 23-04-2016 IPR000014 PAS domain RPE_RS07780 a599069001f2a6938b78410349e4c181 1000 Pfam PF00072 Response regulator receiver domain 886 970 1.2E-14 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS07780 a599069001f2a6938b78410349e4c181 1000 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 744 862 9.3E-14 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS07780 a599069001f2a6938b78410349e4c181 1000 PANTHER PTHR24423 632 999 1.6E-160 T 23-04-2016 RPE_RS07780 a599069001f2a6938b78410349e4c181 1000 Gene3D G3DSA:3.30.450.20 454 587 7.2E-17 T 23-04-2016 RPE_RS07780 a599069001f2a6938b78410349e4c181 1000 PANTHER PTHR24423:SF438 632 999 1.6E-160 T 23-04-2016 RPE_RS03665 7b322031c40949f6265c8da2277ced4c 287 Gene3D G3DSA:1.10.10.10 1 85 9.8E-29 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS03665 7b322031c40949f6265c8da2277ced4c 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.0E-7 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS03665 7b322031c40949f6265c8da2277ced4c 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.0E-7 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS03665 7b322031c40949f6265c8da2277ced4c 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.0E-7 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS03665 7b322031c40949f6265c8da2277ced4c 287 SUPERFAMILY SSF53850 90 282 9.15E-29 T 23-04-2016 RPE_RS03665 7b322031c40949f6265c8da2277ced4c 287 Gene3D G3DSA:3.40.190.10 86 185 3.5E-19 T 23-04-2016 RPE_RS03665 7b322031c40949f6265c8da2277ced4c 287 Pfam PF03466 LysR substrate binding domain 88 277 1.7E-31 T 23-04-2016 IPR005119 LysR, substrate-binding RPE_RS03665 7b322031c40949f6265c8da2277ced4c 287 Gene3D G3DSA:3.40.190.10 186 245 3.5E-11 T 23-04-2016 RPE_RS03665 7b322031c40949f6265c8da2277ced4c 287 SUPERFAMILY SSF46785 1 110 1.32E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS03665 7b322031c40949f6265c8da2277ced4c 287 PANTHER PTHR30579:SF0 1 282 3.0E-107 T 23-04-2016 RPE_RS03665 7b322031c40949f6265c8da2277ced4c 287 PANTHER PTHR30579 1 282 3.0E-107 T 23-04-2016 RPE_RS03665 7b322031c40949f6265c8da2277ced4c 287 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.0E-21 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS17370 4b42a983c719b491b83fa713920234f1 687 Pfam PF01618 MotA/TolQ/ExbB proton channel family 535 656 3.3E-28 T 23-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 RPE_RS17370 4b42a983c719b491b83fa713920234f1 687 Pfam PF10102 Domain of unknown function (DUF2341) 93 181 7.0E-19 T 23-04-2016 IPR018765 Domain of unknown function DUF2341 RPE_RS17370 4b42a983c719b491b83fa713920234f1 687 PANTHER PTHR30625:SF3 344 355 6.4E-98 T 23-04-2016 RPE_RS17370 4b42a983c719b491b83fa713920234f1 687 PANTHER PTHR30625:SF3 510 687 6.4E-98 T 23-04-2016 RPE_RS17370 4b42a983c719b491b83fa713920234f1 687 PANTHER PTHR30625:SF3 371 492 6.4E-98 T 23-04-2016 RPE_RS17370 4b42a983c719b491b83fa713920234f1 687 PANTHER PTHR30625:SF3 155 327 6.4E-98 T 23-04-2016 RPE_RS17370 4b42a983c719b491b83fa713920234f1 687 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 208 339 1.4E-13 T 23-04-2016 RPE_RS17370 4b42a983c719b491b83fa713920234f1 687 SUPERFAMILY SSF49899 158 326 5.68E-21 T 23-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain RPE_RS17370 4b42a983c719b491b83fa713920234f1 687 Gene3D G3DSA:2.60.120.200 385 399 2.8E-18 T 23-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain RPE_RS17370 4b42a983c719b491b83fa713920234f1 687 Gene3D G3DSA:2.60.120.200 159 331 2.8E-18 T 23-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain RPE_RS17370 4b42a983c719b491b83fa713920234f1 687 PANTHER PTHR30625 344 355 6.4E-98 T 23-04-2016 RPE_RS17370 4b42a983c719b491b83fa713920234f1 687 PANTHER PTHR30625 510 687 6.4E-98 T 23-04-2016 RPE_RS17370 4b42a983c719b491b83fa713920234f1 687 PANTHER PTHR30625 371 492 6.4E-98 T 23-04-2016 RPE_RS17370 4b42a983c719b491b83fa713920234f1 687 PANTHER PTHR30625 155 327 6.4E-98 T 23-04-2016 RPE_RS19150 a544222c630299c8b096e6b8f8343db5 632 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 329 632 2.3E-15 T 23-04-2016 IPR006315 Outer membrane autotransporter barrel GO:0019867 RPE_RS19150 a544222c630299c8b096e6b8f8343db5 632 SMART SM00869 359 621 3.2E-38 T 23-04-2016 IPR005546 Autotransporter beta-domain RPE_RS19150 a544222c630299c8b096e6b8f8343db5 632 SUPERFAMILY SSF103515 355 632 3.79E-43 T 23-04-2016 IPR005546 Autotransporter beta-domain RPE_RS19150 a544222c630299c8b096e6b8f8343db5 632 SUPERFAMILY SSF52266 39 291 1.35E-15 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain RPE_RS19150 a544222c630299c8b096e6b8f8343db5 632 Gene3D G3DSA:2.40.128.130 351 632 1.3E-42 T 23-04-2016 IPR005546 Autotransporter beta-domain RPE_RS19150 a544222c630299c8b096e6b8f8343db5 632 Pfam PF03797 Autotransporter beta-domain 359 613 2.9E-33 T 23-04-2016 IPR005546 Autotransporter beta-domain RPE_RS19150 a544222c630299c8b096e6b8f8343db5 632 Gene3D G3DSA:3.40.50.1110 27 295 4.4E-42 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain RPE_RS13515 f58a6540416c3c2b8e30f1b65980be38 279 PANTHER PTHR33969 7 279 2.4E-62 T 23-04-2016 RPE_RS13515 f58a6540416c3c2b8e30f1b65980be38 279 Pfam PF02616 Segregation and condensation protein ScpA 44 259 9.4E-12 T 23-04-2016 IPR003768 Segregation and condensation protein A RPE_RS13515 f58a6540416c3c2b8e30f1b65980be38 279 PANTHER PTHR33969:SF2 7 279 2.4E-62 T 23-04-2016 RPE_RS05160 8eee8af23a3243f56cd63cb19fcf7d01 573 Pfam PF07510 Protein of unknown function (DUF1524) 413 545 9.0E-20 T 23-04-2016 IPR011089 Domain of unknown function DUF1524 RPE_RS05160 8eee8af23a3243f56cd63cb19fcf7d01 573 PANTHER PTHR35149:SF2 1 559 9.5E-53 T 23-04-2016 RPE_RS05160 8eee8af23a3243f56cd63cb19fcf7d01 573 Pfam PF03235 Protein of unknown function DUF262 11 226 1.8E-33 T 23-04-2016 IPR004919 Domain of unknown function DUF262 RPE_RS05160 8eee8af23a3243f56cd63cb19fcf7d01 573 PANTHER PTHR35149 1 559 9.5E-53 T 23-04-2016 RPE_RS14555 3f206f6916678414cb9fb7cc93abb737 258 PRINTS PR01463 EAG/ELK/ERG potassium channel family signature 170 187 3.7E-7 T 23-04-2016 IPR003938 Potassium channel, voltage-dependent, EAG/ELK/ERG GO:0005249|GO:0006813|GO:0016020 RPE_RS14555 3f206f6916678414cb9fb7cc93abb737 258 PRINTS PR01463 EAG/ELK/ERG potassium channel family signature 31 41 3.7E-7 T 23-04-2016 IPR003938 Potassium channel, voltage-dependent, EAG/ELK/ERG GO:0005249|GO:0006813|GO:0016020 RPE_RS14555 3f206f6916678414cb9fb7cc93abb737 258 PRINTS PR01463 EAG/ELK/ERG potassium channel family signature 196 207 3.7E-7 T 23-04-2016 IPR003938 Potassium channel, voltage-dependent, EAG/ELK/ERG GO:0005249|GO:0006813|GO:0016020 RPE_RS14555 3f206f6916678414cb9fb7cc93abb737 258 Gene3D G3DSA:1.10.287.70 33 212 8.2E-29 T 23-04-2016 RPE_RS14555 3f206f6916678414cb9fb7cc93abb737 258 SUPERFAMILY SSF81324 24 212 7.2E-25 T 23-04-2016 RPE_RS14555 3f206f6916678414cb9fb7cc93abb737 258 Pfam PF07885 Ion channel 146 215 2.8E-13 T 23-04-2016 IPR013099 Potassium channel domain RPE_RS19045 654dc8b43c6ec03f6caad6dc2a7c0705 389 Gene3D G3DSA:3.50.50.60 2 68 1.4E-7 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS19045 654dc8b43c6ec03f6caad6dc2a7c0705 389 Pfam PF01494 FAD binding domain 2 342 3.3E-92 T 23-04-2016 IPR002938 FAD-binding domain GO:0071949 RPE_RS19045 654dc8b43c6ec03f6caad6dc2a7c0705 389 TIGRFAM TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase 1 389 2.6E-207 T 23-04-2016 IPR012733 4-hydroxybenzoate 3-monooxygenase GO:0018659|GO:0043639|GO:0050660|GO:0055114 RPE_RS19045 654dc8b43c6ec03f6caad6dc2a7c0705 389 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 277 292 3.5E-28 T 23-04-2016 RPE_RS19045 654dc8b43c6ec03f6caad6dc2a7c0705 389 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 150 165 3.5E-28 T 23-04-2016 RPE_RS19045 654dc8b43c6ec03f6caad6dc2a7c0705 389 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 292 308 3.5E-28 T 23-04-2016 RPE_RS19045 654dc8b43c6ec03f6caad6dc2a7c0705 389 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 3.5E-28 T 23-04-2016 RPE_RS19045 654dc8b43c6ec03f6caad6dc2a7c0705 389 PANTHER PTHR13789 1 389 1.5E-199 T 23-04-2016 RPE_RS19045 654dc8b43c6ec03f6caad6dc2a7c0705 389 Gene3D G3DSA:3.30.9.10 137 298 9.1E-67 T 23-04-2016 RPE_RS19045 654dc8b43c6ec03f6caad6dc2a7c0705 389 PANTHER PTHR13789:SF192 1 389 1.5E-199 T 23-04-2016 RPE_RS19045 654dc8b43c6ec03f6caad6dc2a7c0705 389 SUPERFAMILY SSF54373 174 274 1.22E-46 T 23-04-2016 RPE_RS19045 654dc8b43c6ec03f6caad6dc2a7c0705 389 SUPERFAMILY SSF51905 1 171 8.25E-53 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS19045 654dc8b43c6ec03f6caad6dc2a7c0705 389 SUPERFAMILY SSF51905 273 387 8.25E-53 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS08790 a00edecf192b0c243f29ce2a8d39da7c 551 SMART SM01079 68 252 3.6E-28 T 23-04-2016 IPR006189 CHASE domain RPE_RS08790 a00edecf192b0c243f29ce2a8d39da7c 551 PANTHER PTHR41523 6 537 0.0 T 23-04-2016 RPE_RS08790 a00edecf192b0c243f29ce2a8d39da7c 551 PANTHER PTHR41523:SF3 6 537 0.0 T 23-04-2016 RPE_RS08790 a00edecf192b0c243f29ce2a8d39da7c 551 Pfam PF07536 HWE histidine kinase 346 424 4.0E-23 T 23-04-2016 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 RPE_RS08790 a00edecf192b0c243f29ce2a8d39da7c 551 SMART SM00911 346 424 3.0E-31 T 23-04-2016 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 RPE_RS08790 a00edecf192b0c243f29ce2a8d39da7c 551 Pfam PF03924 CHASE domain 95 246 5.5E-12 T 23-04-2016 IPR006189 CHASE domain RPE_RS02565 9055e469bf84c18addab1e8968acf83a 132 Gene3D G3DSA:1.20.1300.10 4 124 2.0E-41 T 23-04-2016 RPE_RS02565 9055e469bf84c18addab1e8968acf83a 132 PANTHER PTHR10978:SF6 1 130 5.4E-66 T 23-04-2016 RPE_RS02565 9055e469bf84c18addab1e8968acf83a 132 SUPERFAMILY SSF81343 4 124 3.4E-35 T 23-04-2016 RPE_RS02565 9055e469bf84c18addab1e8968acf83a 132 PIRSF PIRSF000178 1 126 3.7E-40 T 23-04-2016 RPE_RS02565 9055e469bf84c18addab1e8968acf83a 132 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 6 123 1.1E-40 T 23-04-2016 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 UniPathway: UPA00223 RPE_RS02565 9055e469bf84c18addab1e8968acf83a 132 ProSitePatterns PS01001 Succinate dehydrogenase cytochrome b subunit signature 2. 82 95 - T 23-04-2016 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 UniPathway: UPA00223 RPE_RS02565 9055e469bf84c18addab1e8968acf83a 132 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 4 120 9.4E-29 T 23-04-2016 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit GO:0016627 UniPathway: UPA00223 RPE_RS02565 9055e469bf84c18addab1e8968acf83a 132 ProSitePatterns PS01000 Succinate dehydrogenase cytochrome b subunit signature 1. 7 31 - T 23-04-2016 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 UniPathway: UPA00223 RPE_RS02565 9055e469bf84c18addab1e8968acf83a 132 PANTHER PTHR10978 1 130 5.4E-66 T 23-04-2016 RPE_RS20745 af5d099d671485c48004daf9d239f310 273 PRINTS PR00069 Aldo-keto reductase signature 191 215 2.1E-42 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RPE_RS20745 af5d099d671485c48004daf9d239f310 273 PRINTS PR00069 Aldo-keto reductase signature 154 183 2.1E-42 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RPE_RS20745 af5d099d671485c48004daf9d239f310 273 PRINTS PR00069 Aldo-keto reductase signature 33 57 2.1E-42 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RPE_RS20745 af5d099d671485c48004daf9d239f310 273 PRINTS PR00069 Aldo-keto reductase signature 120 137 2.1E-42 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RPE_RS20745 af5d099d671485c48004daf9d239f310 273 PRINTS PR00069 Aldo-keto reductase signature 89 107 2.1E-42 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RPE_RS20745 af5d099d671485c48004daf9d239f310 273 Pfam PF00248 Aldo/keto reductase family 13 254 5.1E-50 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RPE_RS20745 af5d099d671485c48004daf9d239f310 273 Gene3D G3DSA:3.20.20.100 6 265 1.5E-90 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RPE_RS20745 af5d099d671485c48004daf9d239f310 273 PANTHER PTHR11732 1 273 1.9E-120 T 23-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta RPE_RS20745 af5d099d671485c48004daf9d239f310 273 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 120 137 - T 23-04-2016 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 RPE_RS20745 af5d099d671485c48004daf9d239f310 273 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 37 54 - T 23-04-2016 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 RPE_RS20745 af5d099d671485c48004daf9d239f310 273 SUPERFAMILY SSF51430 6 266 8.51E-86 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RPE_RS12600 b58d658f201ff926b0d44d35e25a9378 807 SMART SM00382 354 506 5.0E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS12600 b58d658f201ff926b0d44d35e25a9378 807 SUPERFAMILY SSF88697 19 208 1.07E-44 T 23-04-2016 IPR015947 PUA-like domain RPE_RS12600 b58d658f201ff926b0d44d35e25a9378 807 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 600 616 4.0E-56 T 23-04-2016 RPE_RS12600 b58d658f201ff926b0d44d35e25a9378 807 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 362 381 4.0E-56 T 23-04-2016 RPE_RS12600 b58d658f201ff926b0d44d35e25a9378 807 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 678 697 4.0E-56 T 23-04-2016 RPE_RS12600 b58d658f201ff926b0d44d35e25a9378 807 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 731 749 4.0E-56 T 23-04-2016 RPE_RS12600 b58d658f201ff926b0d44d35e25a9378 807 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 708 727 4.0E-56 T 23-04-2016 RPE_RS12600 b58d658f201ff926b0d44d35e25a9378 807 Gene3D G3DSA:3.40.50.300 317 505 2.2E-33 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12600 b58d658f201ff926b0d44d35e25a9378 807 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 358 494 2.9E-19 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RPE_RS12600 b58d658f201ff926b0d44d35e25a9378 807 PIRSF PIRSF001174 7 780 0.0 T 23-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 RPE_RS12600 b58d658f201ff926b0d44d35e25a9378 807 Gene3D G3DSA:3.30.230.10 597 775 2.6E-73 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RPE_RS12600 b58d658f201ff926b0d44d35e25a9378 807 PANTHER PTHR10046 19 781 0.0 T 23-04-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 RPE_RS12600 b58d658f201ff926b0d44d35e25a9378 807 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 574 777 3.1E-95 T 23-04-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 RPE_RS12600 b58d658f201ff926b0d44d35e25a9378 807 Hamap MF_01973 Lon protease [lon]. 18 777 71.34 T 23-04-2016 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 RPE_RS12600 b58d658f201ff926b0d44d35e25a9378 807 SUPERFAMILY SSF52540 323 592 1.47E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12600 b58d658f201ff926b0d44d35e25a9378 807 SUPERFAMILY SSF54211 600 774 4.93E-58 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RPE_RS12600 b58d658f201ff926b0d44d35e25a9378 807 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 681 689 - T 23-04-2016 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 RPE_RS12600 b58d658f201ff926b0d44d35e25a9378 807 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 18 208 8.1E-40 T 23-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 RPE_RS12600 b58d658f201ff926b0d44d35e25a9378 807 PANTHER PTHR10046:SF43 19 781 0.0 T 23-04-2016 RPE_RS12600 b58d658f201ff926b0d44d35e25a9378 807 Gene3D G3DSA:1.10.8.60 506 589 1.0E-30 T 23-04-2016 RPE_RS12600 b58d658f201ff926b0d44d35e25a9378 807 TIGRFAM TIGR00763 lon: endopeptidase La 19 775 1.6E-301 T 23-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 RPE_RS12600 b58d658f201ff926b0d44d35e25a9378 807 SMART SM00464 17 209 1.6E-74 T 23-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 RPE_RS01915 55d308d9cdb3ef53ff6e9f358e5dd1e3 421 Gene3D G3DSA:1.10.720.10 4 48 3.2E-21 T 23-04-2016 RPE_RS01915 55d308d9cdb3ef53ff6e9f358e5dd1e3 421 SUPERFAMILY SSF52540 93 373 3.54E-69 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01915 55d308d9cdb3ef53ff6e9f358e5dd1e3 421 PANTHER PTHR15184 49 420 1.8E-190 T 23-04-2016 RPE_RS01915 55d308d9cdb3ef53ff6e9f358e5dd1e3 421 Gene3D G3DSA:2.40.50.140 52 120 6.9E-36 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS01915 55d308d9cdb3ef53ff6e9f358e5dd1e3 421 SMART SM00382 173 358 6.5E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS01915 55d308d9cdb3ef53ff6e9f358e5dd1e3 421 Pfam PF07498 Rho termination factor, N-terminal domain 8 49 4.5E-16 T 23-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 RPE_RS01915 55d308d9cdb3ef53ff6e9f358e5dd1e3 421 Gene3D G3DSA:3.40.50.300 134 419 5.2E-108 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01915 55d308d9cdb3ef53ff6e9f358e5dd1e3 421 SMART SM00357 55 121 1.1E-19 T 23-04-2016 IPR011129 Cold shock protein GO:0003676 RPE_RS01915 55d308d9cdb3ef53ff6e9f358e5dd1e3 421 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 162 366 9.0E-24 T 23-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RPE_RS01915 55d308d9cdb3ef53ff6e9f358e5dd1e3 421 Pfam PF07497 Rho termination factor, RNA-binding domain 55 128 2.2E-31 T 23-04-2016 IPR011113 Rho termination factor, RNA-binding GO:0003723|GO:0006353 RPE_RS01915 55d308d9cdb3ef53ff6e9f358e5dd1e3 421 SUPERFAMILY SSF50249 51 128 2.6E-29 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS01915 55d308d9cdb3ef53ff6e9f358e5dd1e3 421 SMART SM00959 8 50 4.9E-16 T 23-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 RPE_RS01915 55d308d9cdb3ef53ff6e9f358e5dd1e3 421 PANTHER PTHR15184:SF34 49 420 1.8E-190 T 23-04-2016 RPE_RS01915 55d308d9cdb3ef53ff6e9f358e5dd1e3 421 TIGRFAM TIGR00767 rho: transcription termination factor Rho 5 420 1.1E-215 T 23-04-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 RPE_RS01915 55d308d9cdb3ef53ff6e9f358e5dd1e3 421 SUPERFAMILY SSF68912 4 48 6.28E-11 T 23-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 RPE_RS01915 55d308d9cdb3ef53ff6e9f358e5dd1e3 421 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 421 248.626 T 23-04-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 RPE_RS08065 f449eacc382c61963f6874a2c38a1e28 397 PANTHER PTHR12029 19 194 1.0E-24 T 23-04-2016 RPE_RS08065 f449eacc382c61963f6874a2c38a1e28 397 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 20 251 1.3E-51 T 23-04-2016 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 RPE_RS08065 f449eacc382c61963f6874a2c38a1e28 397 Pfam PF00588 SpoU rRNA Methylase family 19 169 6.6E-28 T 23-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RPE_RS08065 f449eacc382c61963f6874a2c38a1e28 397 SUPERFAMILY SSF75217 16 179 7.19E-31 T 23-04-2016 IPR029028 Alpha/beta knot methyltransferases RPE_RS08065 f449eacc382c61963f6874a2c38a1e28 397 Pfam PF04480 Protein of unknown function (DUF559) 293 393 1.3E-18 T 23-04-2016 IPR007569 Domain of unknown function DUF559 RPE_RS08065 f449eacc382c61963f6874a2c38a1e28 397 Gene3D G3DSA:3.40.1280.10 18 175 3.4E-29 T 23-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RPE_RS13200 bb63c2228cf7b1ed959975f772369f3c 772 SUPERFAMILY SSF48435 142 590 7.19E-90 T 23-04-2016 IPR016026 Lytic transglycosylase, superhelical U-shaped and linker domain GO:0004553|GO:0042597 RPE_RS13200 bb63c2228cf7b1ed959975f772369f3c 772 SUPERFAMILY SSF53955 614 757 1.94E-37 T 23-04-2016 IPR023346 Lysozyme-like domain RPE_RS13200 bb63c2228cf7b1ed959975f772369f3c 772 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 622 650 - T 23-04-2016 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 RPE_RS13200 bb63c2228cf7b1ed959975f772369f3c 772 PANTHER PTHR21666 586 754 3.9E-56 T 23-04-2016 RPE_RS13200 bb63c2228cf7b1ed959975f772369f3c 772 Gene3D G3DSA:1.10.530.10 614 759 1.6E-35 T 23-04-2016 RPE_RS13200 bb63c2228cf7b1ed959975f772369f3c 772 Gene3D G3DSA:1.25.20.10 145 513 2.6E-37 T 23-04-2016 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 RPE_RS13200 bb63c2228cf7b1ed959975f772369f3c 772 PANTHER PTHR21666:SF223 586 754 3.9E-56 T 23-04-2016 RPE_RS13200 bb63c2228cf7b1ed959975f772369f3c 772 Pfam PF01464 Transglycosylase SLT domain 610 715 9.3E-20 T 23-04-2016 IPR008258 Transglycosylase SLT domain 1 RPE_RS01385 d447ec6181fb461302875257bd02d6a6 315 PANTHER PTHR10366:SF399 6 315 1.1E-163 T 23-04-2016 RPE_RS01385 d447ec6181fb461302875257bd02d6a6 315 Gene3D G3DSA:3.90.25.10 173 313 1.4E-55 T 23-04-2016 RPE_RS01385 d447ec6181fb461302875257bd02d6a6 315 Gene3D G3DSA:3.40.50.720 3 172 1.8E-56 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS01385 d447ec6181fb461302875257bd02d6a6 315 PANTHER PTHR10366 6 315 1.1E-163 T 23-04-2016 RPE_RS01385 d447ec6181fb461302875257bd02d6a6 315 Pfam PF16363 GDP-mannose 4,6 dehydratase 8 305 2.0E-48 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS01385 d447ec6181fb461302875257bd02d6a6 315 SUPERFAMILY SSF51735 4 311 2.16E-84 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS15685 dfdbfde37230eeab17426d3d9e31a0f8 277 SUPERFAMILY SSF53807 19 272 1.45E-32 T 23-04-2016 RPE_RS15685 dfdbfde37230eeab17426d3d9e31a0f8 277 Gene3D G3DSA:3.40.50.1980 130 259 1.8E-11 T 23-04-2016 RPE_RS15685 dfdbfde37230eeab17426d3d9e31a0f8 277 Pfam PF01497 Periplasmic binding protein 27 237 3.9E-23 T 23-04-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 RPE_RS15685 dfdbfde37230eeab17426d3d9e31a0f8 277 Gene3D G3DSA:3.40.50.1980 24 129 5.3E-13 T 23-04-2016 RPE_RS15685 dfdbfde37230eeab17426d3d9e31a0f8 277 PANTHER PTHR30535 20 272 1.2E-19 T 23-04-2016 RPE_RS24495 6668272b9f466477662a88ba14d15816 193 PANTHER PTHR30529 10 190 5.0E-46 T 23-04-2016 RPE_RS24495 6668272b9f466477662a88ba14d15816 193 SUPERFAMILY SSF81342 15 190 1.49E-29 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 RPE_RS24495 6668272b9f466477662a88ba14d15816 193 Pfam PF01292 Prokaryotic cytochrome b561 17 184 4.2E-26 T 23-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 RPE_RS03305 c29b5eac24ac1d41c84876c414fd1102 341 Gene3D G3DSA:3.30.1330.60 213 339 4.7E-32 T 23-04-2016 IPR006665 OmpA-like domain RPE_RS03305 c29b5eac24ac1d41c84876c414fd1102 341 Pfam PF00691 OmpA family 227 332 1.6E-17 T 23-04-2016 IPR006665 OmpA-like domain RPE_RS03305 c29b5eac24ac1d41c84876c414fd1102 341 PANTHER PTHR30329 225 341 2.8E-25 T 23-04-2016 RPE_RS03305 c29b5eac24ac1d41c84876c414fd1102 341 SUPERFAMILY SSF103088 203 337 5.62E-28 T 23-04-2016 IPR006665 OmpA-like domain RPE_RS03305 c29b5eac24ac1d41c84876c414fd1102 341 PANTHER PTHR30329:SF5 225 341 2.8E-25 T 23-04-2016 RPE_RS23505 54125c3c0123844ce02f0df50ff25f46 231 Gene3D G3DSA:3.40.50.150 46 207 1.7E-37 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS23505 54125c3c0123844ce02f0df50ff25f46 231 PANTHER PTHR10509 62 229 1.3E-36 T 23-04-2016 RPE_RS23505 54125c3c0123844ce02f0df50ff25f46 231 SUPERFAMILY SSF53335 54 205 6.29E-30 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS23505 54125c3c0123844ce02f0df50ff25f46 231 PANTHER PTHR10509:SF10 62 229 1.3E-36 T 23-04-2016 RPE_RS23505 54125c3c0123844ce02f0df50ff25f46 231 Pfam PF13578 Methyltransferase domain 92 193 1.2E-16 T 23-04-2016 RPE_RS05030 72fd4919bcb4fcf079dbd12187b427fc 290 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 274 4.2E-40 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RPE_RS05030 72fd4919bcb4fcf079dbd12187b427fc 290 PANTHER PTHR11795:SF398 1 290 5.0E-89 T 23-04-2016 RPE_RS05030 72fd4919bcb4fcf079dbd12187b427fc 290 PANTHER PTHR11795 1 290 5.0E-89 T 23-04-2016 RPE_RS17060 9a3e64d7d7031ffd33e01e79318aaf97 804 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 603 617 3.0E-36 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 RPE_RS17060 9a3e64d7d7031ffd33e01e79318aaf97 804 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 570 588 3.0E-36 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 RPE_RS17060 9a3e64d7d7031ffd33e01e79318aaf97 804 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 541 559 3.0E-36 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 RPE_RS17060 9a3e64d7d7031ffd33e01e79318aaf97 804 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 499 517 3.0E-36 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 RPE_RS17060 9a3e64d7d7031ffd33e01e79318aaf97 804 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 310 322 - T 23-04-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 RPE_RS17060 9a3e64d7d7031ffd33e01e79318aaf97 804 Gene3D G3DSA:1.10.8.60 673 751 7.3E-29 T 23-04-2016 RPE_RS17060 9a3e64d7d7031ffd33e01e79318aaf97 804 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 526 544 - T 23-04-2016 IPR028299 ClpA/B, conserved site 2 RPE_RS17060 9a3e64d7d7031ffd33e01e79318aaf97 804 SMART SM00382 495 635 6.0E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS17060 9a3e64d7d7031ffd33e01e79318aaf97 804 SMART SM00382 214 360 9.0E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS17060 9a3e64d7d7031ffd33e01e79318aaf97 804 PANTHER PTHR11638:SF111 4 140 0.0 T 23-04-2016 RPE_RS17060 9a3e64d7d7031ffd33e01e79318aaf97 804 PANTHER PTHR11638:SF111 157 769 0.0 T 23-04-2016 RPE_RS17060 9a3e64d7d7031ffd33e01e79318aaf97 804 SUPERFAMILY SSF81923 4 143 5.49E-56 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 RPE_RS17060 9a3e64d7d7031ffd33e01e79318aaf97 804 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 661 741 6.1E-23 T 23-04-2016 IPR019489 Clp ATPase, C-terminal RPE_RS17060 9a3e64d7d7031ffd33e01e79318aaf97 804 Gene3D G3DSA:1.10.8.60 359 443 1.3E-28 T 23-04-2016 RPE_RS17060 9a3e64d7d7031ffd33e01e79318aaf97 804 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 5 741 0.0 T 23-04-2016 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0004176 RPE_RS17060 9a3e64d7d7031ffd33e01e79318aaf97 804 Pfam PF07724 AAA domain (Cdc48 subfamily) 494 655 5.7E-47 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RPE_RS17060 9a3e64d7d7031ffd33e01e79318aaf97 804 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 219 330 3.5E-12 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RPE_RS17060 9a3e64d7d7031ffd33e01e79318aaf97 804 Gene3D G3DSA:3.40.50.300 177 358 8.0E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS17060 9a3e64d7d7031ffd33e01e79318aaf97 804 Gene3D G3DSA:1.10.1780.10 4 143 7.8E-40 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 RPE_RS17060 9a3e64d7d7031ffd33e01e79318aaf97 804 SUPERFAMILY SSF52540 175 434 7.04E-69 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS17060 9a3e64d7d7031ffd33e01e79318aaf97 804 SUPERFAMILY SSF52540 445 741 8.93E-73 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS17060 9a3e64d7d7031ffd33e01e79318aaf97 804 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 15 64 9.7E-12 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 RPE_RS17060 9a3e64d7d7031ffd33e01e79318aaf97 804 PANTHER PTHR11638 4 140 0.0 T 23-04-2016 RPE_RS17060 9a3e64d7d7031ffd33e01e79318aaf97 804 PANTHER PTHR11638 157 769 0.0 T 23-04-2016 RPE_RS17060 9a3e64d7d7031ffd33e01e79318aaf97 804 SMART SM01086 661 750 4.7E-33 T 23-04-2016 IPR019489 Clp ATPase, C-terminal RPE_RS17060 9a3e64d7d7031ffd33e01e79318aaf97 804 Gene3D G3DSA:3.40.50.300 450 672 5.2E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS00500 40f191b6ffa1b16bc8f68f2652c873f4 325 Gene3D G3DSA:2.40.290.10 5 152 6.4E-11 T 23-04-2016 IPR016194 SPOC-like, C-terminal domain RPE_RS00500 40f191b6ffa1b16bc8f68f2652c873f4 325 SUPERFAMILY SSF100939 3 261 4.51E-58 T 23-04-2016 IPR016194 SPOC-like, C-terminal domain RPE_RS00500 40f191b6ffa1b16bc8f68f2652c873f4 325 Hamap MF_01875 Non-homologous end joining protein Ku [ku]. 3 256 30.927 T 23-04-2016 IPR009187 Non-homologous end joining protein Ku, prokaryotic type RPE_RS00500 40f191b6ffa1b16bc8f68f2652c873f4 325 Pfam PF02735 Ku70/Ku80 beta-barrel domain 14 194 6.8E-33 T 23-04-2016 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: REACT_216|Reactome: REACT_6185 RPE_RS00500 40f191b6ffa1b16bc8f68f2652c873f4 325 PANTHER PTHR41251:SF1 4 308 3.0E-55 T 23-04-2016 RPE_RS00500 40f191b6ffa1b16bc8f68f2652c873f4 325 PANTHER PTHR41251 4 308 3.0E-55 T 23-04-2016 RPE_RS00500 40f191b6ffa1b16bc8f68f2652c873f4 325 PIRSF PIRSF006493 1 293 2.1E-103 T 23-04-2016 IPR009187 Non-homologous end joining protein Ku, prokaryotic type RPE_RS00500 40f191b6ffa1b16bc8f68f2652c873f4 325 SMART SM00559 55 183 4.8E-17 T 23-04-2016 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: REACT_216|Reactome: REACT_6185 RPE_RS00500 40f191b6ffa1b16bc8f68f2652c873f4 325 TIGRFAM TIGR02772 Ku_bact: Ku protein 4 257 4.7E-90 T 23-04-2016 IPR009187 Non-homologous end joining protein Ku, prokaryotic type RPE_RS24410 089ac35d30fd272a81c4dbb482e579ef 404 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 10 390 2.0E-136 T 23-04-2016 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 RPE_RS24410 089ac35d30fd272a81c4dbb482e579ef 404 PANTHER PTHR11986 14 398 1.6E-177 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RPE_RS24410 089ac35d30fd272a81c4dbb482e579ef 404 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 7 391 45.526 T 23-04-2016 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 RPE_RS24410 089ac35d30fd272a81c4dbb482e579ef 404 Gene3D G3DSA:3.90.1150.10 6 53 1.6E-32 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS24410 089ac35d30fd272a81c4dbb482e579ef 404 Gene3D G3DSA:3.90.1150.10 300 391 1.6E-32 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS24410 089ac35d30fd272a81c4dbb482e579ef 404 SUPERFAMILY SSF53383 8 390 8.91E-123 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS24410 089ac35d30fd272a81c4dbb482e579ef 404 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 216 253 - T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RPE_RS24410 089ac35d30fd272a81c4dbb482e579ef 404 Gene3D G3DSA:3.40.640.10 54 295 1.8E-87 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS24410 089ac35d30fd272a81c4dbb482e579ef 404 PANTHER PTHR11986:SF79 14 398 1.6E-177 T 23-04-2016 RPE_RS24410 089ac35d30fd272a81c4dbb482e579ef 404 Pfam PF00202 Aminotransferase class-III 19 389 1.0E-115 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RPE_RS16540 9405747fd241cf62a6d9fd9b183f3edb 287 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 20 276 1.3E-66 T 23-04-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 RPE_RS16540 9405747fd241cf62a6d9fd9b183f3edb 287 Gene3D G3DSA:3.40.50.150 4 212 4.6E-66 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS16540 9405747fd241cf62a6d9fd9b183f3edb 287 SUPERFAMILY SSF53335 17 279 2.03E-73 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS16540 9405747fd241cf62a6d9fd9b183f3edb 287 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 19 278 51.412 T 23-04-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 RPE_RS16540 9405747fd241cf62a6d9fd9b183f3edb 287 SMART SM00650 35 211 9.2E-66 T 23-04-2016 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 RPE_RS16540 9405747fd241cf62a6d9fd9b183f3edb 287 Pfam PF00398 Ribosomal RNA adenine dimethylase 20 278 5.7E-45 T 23-04-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm RPE_RS16540 9405747fd241cf62a6d9fd9b183f3edb 287 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 51 79 - T 23-04-2016 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 RPE_RS16540 9405747fd241cf62a6d9fd9b183f3edb 287 PANTHER PTHR11727 4 277 1.0E-92 T 23-04-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm RPE_RS16540 9405747fd241cf62a6d9fd9b183f3edb 287 Gene3D G3DSA:1.10.8.100 213 279 2.3E-20 T 23-04-2016 IPR023165 rRNA adenine dimethylase-like RPE_RS03590 d5ff43c2048ced2c4ea08587dd73d416 253 Gene3D G3DSA:3.10.200.10 31 250 2.6E-64 T 23-04-2016 IPR001148 Alpha carbonic anhydrase RPE_RS03590 d5ff43c2048ced2c4ea08587dd73d416 253 PANTHER PTHR18952:SF122 1 252 9.5E-111 T 23-04-2016 RPE_RS03590 d5ff43c2048ced2c4ea08587dd73d416 253 Pfam PF00194 Eukaryotic-type carbonic anhydrase 32 249 4.2E-47 T 23-04-2016 IPR001148 Alpha carbonic anhydrase RPE_RS03590 d5ff43c2048ced2c4ea08587dd73d416 253 ProSitePatterns PS00162 Alpha-carbonic anhydrases signature. 122 138 - T 23-04-2016 IPR018338 Carbonic anhydrase, alpha-class, conserved site GO:0004089|GO:0006730|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RPE_RS03590 d5ff43c2048ced2c4ea08587dd73d416 253 SMART SM01057 33 253 5.4E-93 T 23-04-2016 IPR001148 Alpha carbonic anhydrase RPE_RS03590 d5ff43c2048ced2c4ea08587dd73d416 253 SUPERFAMILY SSF51069 32 250 6.54E-71 T 23-04-2016 IPR001148 Alpha carbonic anhydrase RPE_RS03590 d5ff43c2048ced2c4ea08587dd73d416 253 PANTHER PTHR18952 1 252 9.5E-111 T 23-04-2016 IPR023561 Carbonic anhydrase, alpha-class RPE_RS23875 7b395b935fe4ee6d5ff67af2895f296c 75 Gene3D G3DSA:1.20.20.10 6 73 2.3E-19 T 23-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 RPE_RS23875 7b395b935fe4ee6d5ff67af2895f296c 75 SUPERFAMILY SSF81333 4 74 1.11E-16 T 23-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 RPE_RS23875 7b395b935fe4ee6d5ff67af2895f296c 75 PRINTS PR00124 ATP synthase C subunit signature 9 28 7.7E-24 T 23-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 RPE_RS23875 7b395b935fe4ee6d5ff67af2895f296c 75 PRINTS PR00124 ATP synthase C subunit signature 30 45 7.7E-24 T 23-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 RPE_RS23875 7b395b935fe4ee6d5ff67af2895f296c 75 PRINTS PR00124 ATP synthase C subunit signature 47 72 7.7E-24 T 23-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 RPE_RS23875 7b395b935fe4ee6d5ff67af2895f296c 75 Pfam PF00137 ATP synthase subunit C 9 71 1.8E-10 T 23-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 RPE_RS23875 7b395b935fe4ee6d5ff67af2895f296c 75 PANTHER PTHR10031 1 75 1.4E-19 T 23-04-2016 RPE_RS23875 7b395b935fe4ee6d5ff67af2895f296c 75 Hamap MF_01396 ATP synthase subunit c [atpH]. 7 74 13.554 T 23-04-2016 RPE_RS10425 c9d3f0dc5e28c1975df00a4c6fa73ea8 118 Gene3D G3DSA:4.10.490.10 53 105 5.7E-7 T 23-04-2016 IPR000170 High potential iron-sulphur protein GO:0009055|GO:0019646 RPE_RS15555 6fb760d9aac3689f70a7c9606c84649c 182 SUPERFAMILY SSF160387 53 169 2.22E-37 T 23-04-2016 RPE_RS15555 6fb760d9aac3689f70a7c9606c84649c 182 Pfam PF05573 NosL 14 162 1.0E-51 T 23-04-2016 IPR008719 Nitrous oxide reductase accessory protein NosL RPE_RS15555 6fb760d9aac3689f70a7c9606c84649c 182 PANTHER PTHR41247 1 181 1.7E-41 T 23-04-2016 RPE_RS21575 ef6541281b796aaf8b7492df11a7068d 402 Pfam PF02515 CoA-transferase family III 8 377 6.2E-96 T 23-04-2016 IPR003673 CoA-transferase family III GO:0003824 RPE_RS21575 ef6541281b796aaf8b7492df11a7068d 402 SUPERFAMILY SSF89796 4 401 3.27E-103 T 23-04-2016 IPR023606 CoA-transferase family III domain RPE_RS21575 ef6541281b796aaf8b7492df11a7068d 402 PANTHER PTHR24023:SF593 62 388 2.3E-106 T 23-04-2016 RPE_RS21575 ef6541281b796aaf8b7492df11a7068d 402 Gene3D G3DSA:3.30.1540.10 229 313 3.1E-18 T 23-04-2016 RPE_RS21575 ef6541281b796aaf8b7492df11a7068d 402 PANTHER PTHR24023 62 388 2.3E-106 T 23-04-2016 RPE_RS21575 ef6541281b796aaf8b7492df11a7068d 402 Gene3D G3DSA:3.40.50.10540 314 401 5.5E-85 T 23-04-2016 IPR023606 CoA-transferase family III domain RPE_RS21575 ef6541281b796aaf8b7492df11a7068d 402 Gene3D G3DSA:3.40.50.10540 2 223 5.5E-85 T 23-04-2016 IPR023606 CoA-transferase family III domain RPE_RS14780 27abdc7e51c293884417082821879888 802 SMART SM00267 364 536 1.6E-62 T 23-04-2016 IPR000160 GGDEF domain RPE_RS14780 27abdc7e51c293884417082821879888 802 Pfam PF00990 Diguanylate cyclase, GGDEF domain 375 531 1.2E-47 T 23-04-2016 IPR000160 GGDEF domain RPE_RS14780 27abdc7e51c293884417082821879888 802 Pfam PF03707 Bacterial signalling protein N terminal repeat 184 228 5.5E-5 T 23-04-2016 IPR005330 MHYT domain RPE_RS14780 27abdc7e51c293884417082821879888 802 Pfam PF03707 Bacterial signalling protein N terminal repeat 120 169 7.7E-9 T 23-04-2016 IPR005330 MHYT domain RPE_RS14780 27abdc7e51c293884417082821879888 802 Pfam PF03707 Bacterial signalling protein N terminal repeat 58 105 4.3E-9 T 23-04-2016 IPR005330 MHYT domain RPE_RS14780 27abdc7e51c293884417082821879888 802 PANTHER PTHR10799 407 646 7.0E-98 T 23-04-2016 RPE_RS14780 27abdc7e51c293884417082821879888 802 PANTHER PTHR10799 232 380 7.0E-98 T 23-04-2016 RPE_RS14780 27abdc7e51c293884417082821879888 802 Gene3D G3DSA:3.30.450.20 248 363 3.2E-10 T 23-04-2016 RPE_RS14780 27abdc7e51c293884417082821879888 802 Gene3D G3DSA:3.30.70.270 376 543 3.2E-57 T 23-04-2016 RPE_RS14780 27abdc7e51c293884417082821879888 802 Pfam PF00563 EAL domain 553 783 1.8E-67 T 23-04-2016 IPR001633 EAL domain RPE_RS14780 27abdc7e51c293884417082821879888 802 SMART SM00052 546 788 1.8E-95 T 23-04-2016 IPR001633 EAL domain RPE_RS14780 27abdc7e51c293884417082821879888 802 SUPERFAMILY SSF55785 247 362 1.64E-8 T 23-04-2016 IPR000014 PAS domain RPE_RS14780 27abdc7e51c293884417082821879888 802 SUPERFAMILY SSF55073 380 537 5.49E-48 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS14780 27abdc7e51c293884417082821879888 802 Gene3D G3DSA:3.20.20.450 550 795 3.2E-86 T 23-04-2016 IPR001633 EAL domain RPE_RS14780 27abdc7e51c293884417082821879888 802 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 255 370 8.7E-6 T 23-04-2016 IPR000014 PAS domain RPE_RS14780 27abdc7e51c293884417082821879888 802 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 372 534 4.5E-42 T 23-04-2016 IPR000160 GGDEF domain RPE_RS14780 27abdc7e51c293884417082821879888 802 Pfam PF12860 PAS fold 256 368 7.1E-20 T 23-04-2016 RPE_RS14780 27abdc7e51c293884417082821879888 802 SUPERFAMILY SSF141868 552 794 2.22E-79 T 23-04-2016 IPR001633 EAL domain RPE_RS14780 27abdc7e51c293884417082821879888 802 PANTHER PTHR10799:SF657 407 646 7.0E-98 T 23-04-2016 RPE_RS14780 27abdc7e51c293884417082821879888 802 PANTHER PTHR10799:SF657 232 380 7.0E-98 T 23-04-2016 RPE_RS10380 27574a1c7111d144884e15fb38a44dbc 641 PANTHER PTHR30557 122 152 0.0 T 23-04-2016 RPE_RS10380 27574a1c7111d144884e15fb38a44dbc 641 PANTHER PTHR30557 180 629 0.0 T 23-04-2016 RPE_RS10380 27574a1c7111d144884e15fb38a44dbc 641 PANTHER PTHR30557 4 88 0.0 T 23-04-2016 RPE_RS10380 27574a1c7111d144884e15fb38a44dbc 641 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 129 581 1.9E-207 T 23-04-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 RPE_RS10380 27574a1c7111d144884e15fb38a44dbc 641 Pfam PF01964 Radical SAM ThiC family 130 577 1.8E-195 T 23-04-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 RPE_RS10380 27574a1c7111d144884e15fb38a44dbc 641 Pfam PF13667 ThiC-associated domain 19 90 9.2E-23 T 23-04-2016 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 RPE_RS10380 27574a1c7111d144884e15fb38a44dbc 641 PANTHER PTHR30557:SF1 122 152 0.0 T 23-04-2016 RPE_RS10380 27574a1c7111d144884e15fb38a44dbc 641 PANTHER PTHR30557:SF1 180 629 0.0 T 23-04-2016 RPE_RS10380 27574a1c7111d144884e15fb38a44dbc 641 PANTHER PTHR30557:SF1 4 88 0.0 T 23-04-2016 RPE_RS10380 27574a1c7111d144884e15fb38a44dbc 641 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 129 583 55.507 T 23-04-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 RPE_RS08655 dd63b74ab52a3f9f31ef8b6e18b454d8 653 PANTHER PTHR22773 1 557 7.1E-145 T 23-04-2016 RPE_RS08655 dd63b74ab52a3f9f31ef8b6e18b454d8 653 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 69 124 2.4E-12 T 23-04-2016 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal RPE_RS08655 dd63b74ab52a3f9f31ef8b6e18b454d8 653 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 525 546 3.7E-9 T 23-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RPE_RS08655 dd63b74ab52a3f9f31ef8b6e18b454d8 653 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 85 105 3.7E-9 T 23-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RPE_RS08655 dd63b74ab52a3f9f31ef8b6e18b454d8 653 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 265 287 3.7E-9 T 23-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RPE_RS08655 dd63b74ab52a3f9f31ef8b6e18b454d8 653 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 419 441 3.7E-9 T 23-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RPE_RS08655 dd63b74ab52a3f9f31ef8b6e18b454d8 653 PANTHER PTHR22773:SF50 1 557 7.1E-145 T 23-04-2016 RPE_RS08655 dd63b74ab52a3f9f31ef8b6e18b454d8 653 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 11 551 1.9E-127 T 23-04-2016 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 RPE_RS08655 dd63b74ab52a3f9f31ef8b6e18b454d8 653 Pfam PF00361 Proton-conducting membrane transporter 136 413 2.2E-74 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RPE_RS08655 dd63b74ab52a3f9f31ef8b6e18b454d8 653 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 247 273 2.6E-51 T 23-04-2016 RPE_RS08655 dd63b74ab52a3f9f31ef8b6e18b454d8 653 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 160 181 2.6E-51 T 23-04-2016 RPE_RS08655 dd63b74ab52a3f9f31ef8b6e18b454d8 653 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 83 108 2.6E-51 T 23-04-2016 RPE_RS08655 dd63b74ab52a3f9f31ef8b6e18b454d8 653 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 420 439 2.6E-51 T 23-04-2016 RPE_RS08655 dd63b74ab52a3f9f31ef8b6e18b454d8 653 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 315 327 2.6E-51 T 23-04-2016 RPE_RS08655 dd63b74ab52a3f9f31ef8b6e18b454d8 653 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 225 246 2.6E-51 T 23-04-2016 RPE_RS08655 dd63b74ab52a3f9f31ef8b6e18b454d8 653 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 113 133 2.6E-51 T 23-04-2016 RPE_RS09985 5e22b5649fc3c85f7731292d17ae6f20 461 SUPERFAMILY SSF55424 336 454 7.39E-37 T 23-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 RPE_RS09985 5e22b5649fc3c85f7731292d17ae6f20 461 Gene3D G3DSA:3.50.50.60 137 329 1.6E-52 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS09985 5e22b5649fc3c85f7731292d17ae6f20 461 TIGRFAM TIGR01424 gluta_reduc_2: glutathione-disulfide reductase 4 449 5.1E-190 T 23-04-2016 IPR006324 Glutathione-disulphide reductase GO:0004362|GO:0006749|GO:0050660|GO:0050661|GO:0055114 KEGG: 00480+1.8.1.7|MetaCyc: PWY-4081 RPE_RS09985 5e22b5649fc3c85f7731292d17ae6f20 461 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 340 448 6.2E-35 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RPE_RS09985 5e22b5649fc3c85f7731292d17ae6f20 461 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 40 50 - T 23-04-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 RPE_RS09985 5e22b5649fc3c85f7731292d17ae6f20 461 SUPERFAMILY SSF51905 3 364 7.02E-54 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS09985 5e22b5649fc3c85f7731292d17ae6f20 461 PIRSF PIRSF000350 2 457 1.2E-82 T 23-04-2016 RPE_RS09985 5e22b5649fc3c85f7731292d17ae6f20 461 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 320 3.3E-63 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS09985 5e22b5649fc3c85f7731292d17ae6f20 461 Gene3D G3DSA:3.50.50.60 5 136 1.4E-40 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS09985 5e22b5649fc3c85f7731292d17ae6f20 461 PANTHER PTHR22912:SF106 2 452 3.1E-192 T 23-04-2016 RPE_RS09985 5e22b5649fc3c85f7731292d17ae6f20 461 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 171 189 2.2E-28 T 23-04-2016 RPE_RS09985 5e22b5649fc3c85f7731292d17ae6f20 461 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 255 271 2.2E-28 T 23-04-2016 RPE_RS09985 5e22b5649fc3c85f7731292d17ae6f20 461 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 133 151 2.2E-28 T 23-04-2016 RPE_RS09985 5e22b5649fc3c85f7731292d17ae6f20 461 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 285 307 2.2E-28 T 23-04-2016 RPE_RS09985 5e22b5649fc3c85f7731292d17ae6f20 461 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 2.2E-28 T 23-04-2016 RPE_RS09985 5e22b5649fc3c85f7731292d17ae6f20 461 PANTHER PTHR22912 2 452 3.1E-192 T 23-04-2016 RPE_RS09985 5e22b5649fc3c85f7731292d17ae6f20 461 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 136 145 2.0E-68 T 23-04-2016 RPE_RS09985 5e22b5649fc3c85f7731292d17ae6f20 461 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 336 357 2.0E-68 T 23-04-2016 RPE_RS09985 5e22b5649fc3c85f7731292d17ae6f20 461 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 2.0E-68 T 23-04-2016 RPE_RS09985 5e22b5649fc3c85f7731292d17ae6f20 461 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 171 196 2.0E-68 T 23-04-2016 RPE_RS09985 5e22b5649fc3c85f7731292d17ae6f20 461 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 2.0E-68 T 23-04-2016 RPE_RS09985 5e22b5649fc3c85f7731292d17ae6f20 461 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 401 416 2.0E-68 T 23-04-2016 RPE_RS09985 5e22b5649fc3c85f7731292d17ae6f20 461 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 300 307 2.0E-68 T 23-04-2016 RPE_RS09985 5e22b5649fc3c85f7731292d17ae6f20 461 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 256 270 2.0E-68 T 23-04-2016 RPE_RS09985 5e22b5649fc3c85f7731292d17ae6f20 461 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 423 443 2.0E-68 T 23-04-2016 RPE_RS09985 5e22b5649fc3c85f7731292d17ae6f20 461 Gene3D G3DSA:3.30.390.30 339 456 4.5E-45 T 23-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RPE_RS09590 83ed7c0271e915be794dddc266e17b33 419 TIGRFAM TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family 19 416 3.0E-123 T 23-04-2016 IPR006444 Phage major capsid protein, HK97 RPE_RS09590 83ed7c0271e915be794dddc266e17b33 419 Pfam PF05065 Phage capsid family 131 416 1.1E-87 T 23-04-2016 IPR024455 Phage capsid RPE_RS09590 83ed7c0271e915be794dddc266e17b33 419 SUPERFAMILY SSF56563 123 418 2.75E-79 T 23-04-2016 RPE_RS24525 c4e5de6158b208673de4fc8c1ed9ab07 291 TIGRFAM TIGR01694 MTAP: methylthioadenosine phosphorylase 6 242 1.6E-85 T 23-04-2016 IPR010044 Methylthioadenosine phosphorylase (MTAP) GO:0017061 RPE_RS24525 c4e5de6158b208673de4fc8c1ed9ab07 291 Pfam PF01048 Phosphorylase superfamily 6 243 3.8E-39 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RPE_RS24525 c4e5de6158b208673de4fc8c1ed9ab07 291 Gene3D G3DSA:3.40.50.1580 4 265 3.5E-83 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RPE_RS24525 c4e5de6158b208673de4fc8c1ed9ab07 291 SUPERFAMILY SSF53167 5 271 2.36E-86 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RPE_RS24525 c4e5de6158b208673de4fc8c1ed9ab07 291 PANTHER PTHR11904:SF1 7 287 9.5E-128 T 23-04-2016 RPE_RS24525 c4e5de6158b208673de4fc8c1ed9ab07 291 PANTHER PTHR11904 7 287 9.5E-128 T 23-04-2016 IPR001369 PNP/MTAP phosphorylase RPE_RS24525 c4e5de6158b208673de4fc8c1ed9ab07 291 Hamap MF_01963 S-methyl-5'-thioadenosine phosphorylase [mtnP]. 4 271 39.994 T 23-04-2016 IPR010044 Methylthioadenosine phosphorylase (MTAP) GO:0017061 RPE_RS19025 9945643f2129040e95f3b6199800cae4 152 Gene3D G3DSA:2.40.160.20 2 151 1.2E-50 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RPE_RS19025 9945643f2129040e95f3b6199800cae4 152 PANTHER PTHR37315:SF1 3 152 2.3E-45 T 23-04-2016 RPE_RS19025 9945643f2129040e95f3b6199800cae4 152 PANTHER PTHR37315 3 152 2.3E-45 T 23-04-2016 RPE_RS19025 9945643f2129040e95f3b6199800cae4 152 Pfam PF11578 Protein of unknown function (DUF3237) 7 151 8.5E-40 T 23-04-2016 IPR020915 Uncharacterised protein family UPF0311 RPE_RS23335 d4005f3b5036c72ec223bc43b09e9f5a 576 Gene3D G3DSA:1.10.287.950 330 480 1.7E-4 T 23-04-2016 RPE_RS23335 d4005f3b5036c72ec223bc43b09e9f5a 576 SUPERFAMILY SSF58104 351 507 1.22E-6 T 23-04-2016 RPE_RS04575 f342284f3773f605d4cfa192933ba3b3 491 SMART SM00028 346 379 1.4E-4 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS04575 f342284f3773f605d4cfa192933ba3b3 491 SMART SM00028 380 413 0.0091 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS04575 f342284f3773f605d4cfa192933ba3b3 491 SMART SM00028 448 481 140.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS04575 f342284f3773f605d4cfa192933ba3b3 491 SMART SM00028 414 447 0.019 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS04575 f342284f3773f605d4cfa192933ba3b3 491 Gene3D G3DSA:3.40.50.1460 176 250 7.8E-4 T 23-04-2016 IPR029030 Caspase-like domain RPE_RS04575 f342284f3773f605d4cfa192933ba3b3 491 PANTHER PTHR22576 1 270 2.8E-80 T 23-04-2016 RPE_RS04575 f342284f3773f605d4cfa192933ba3b3 491 Gene3D G3DSA:3.40.50.1460 25 160 3.1E-6 T 23-04-2016 IPR029030 Caspase-like domain RPE_RS04575 f342284f3773f605d4cfa192933ba3b3 491 Pfam PF00656 Caspase domain 28 248 2.8E-25 T 23-04-2016 RPE_RS04575 f342284f3773f605d4cfa192933ba3b3 491 Gene3D G3DSA:1.25.40.10 332 408 3.5E-22 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS04575 f342284f3773f605d4cfa192933ba3b3 491 SUPERFAMILY SSF48452 339 484 2.97E-30 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS04575 f342284f3773f605d4cfa192933ba3b3 491 PANTHER PTHR22576:SF30 1 270 2.8E-80 T 23-04-2016 RPE_RS04575 f342284f3773f605d4cfa192933ba3b3 491 Gene3D G3DSA:1.25.40.10 409 482 1.0E-14 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS04575 f342284f3773f605d4cfa192933ba3b3 491 Pfam PF13432 Tetratricopeptide repeat 362 412 2.5E-5 T 23-04-2016 RPE_RS04575 f342284f3773f605d4cfa192933ba3b3 491 SUPERFAMILY SSF52129 8 250 2.99E-44 T 23-04-2016 IPR029030 Caspase-like domain RPE_RS07095 1a8d3ec03ac01ba2c9bb623b2e1943a9 226 Gene3D G3DSA:3.90.730.10 33 223 2.4E-38 T 23-04-2016 IPR001568 Ribonuclease T2-like GO:0003723|GO:0033897 RPE_RS07095 1a8d3ec03ac01ba2c9bb623b2e1943a9 226 Pfam PF00445 Ribonuclease T2 family 37 205 1.9E-14 T 23-04-2016 IPR001568 Ribonuclease T2-like GO:0003723|GO:0033897 RPE_RS07095 1a8d3ec03ac01ba2c9bb623b2e1943a9 226 ProSitePatterns PS00530 Ribonuclease T2 family histidine active site 1. 73 80 - T 23-04-2016 IPR018188 Ribonuclease T2, His active site 1 GO:0003723|GO:0033897 RPE_RS07095 1a8d3ec03ac01ba2c9bb623b2e1943a9 226 PANTHER PTHR11240 3 222 1.2E-29 T 23-04-2016 IPR001568 Ribonuclease T2-like GO:0003723|GO:0033897 RPE_RS07095 1a8d3ec03ac01ba2c9bb623b2e1943a9 226 SUPERFAMILY SSF55895 33 223 2.09E-39 T 23-04-2016 IPR001568 Ribonuclease T2-like GO:0003723|GO:0033897 RPE_RS14910 98512f181ceb757a361d45fd66ffbd2a 508 SUPERFAMILY SSF101960 156 505 2.22E-135 T 23-04-2016 RPE_RS14910 98512f181ceb757a361d45fd66ffbd2a 508 SUPERFAMILY SSF101960 39 125 2.22E-135 T 23-04-2016 RPE_RS14910 98512f181ceb757a361d45fd66ffbd2a 508 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 151 499 3.9E-155 T 23-04-2016 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 RPE_RS14910 98512f181ceb757a361d45fd66ffbd2a 508 PANTHER PTHR30508 3 125 9.1E-305 T 23-04-2016 RPE_RS14910 98512f181ceb757a361d45fd66ffbd2a 508 PANTHER PTHR30508 152 508 9.1E-305 T 23-04-2016 RPE_RS14910 98512f181ceb757a361d45fd66ffbd2a 508 PANTHER PTHR30508:SF1 3 125 9.1E-305 T 23-04-2016 RPE_RS14910 98512f181ceb757a361d45fd66ffbd2a 508 PANTHER PTHR30508:SF1 152 508 9.1E-305 T 23-04-2016 RPE_RS14910 98512f181ceb757a361d45fd66ffbd2a 508 Pfam PF01458 Uncharacterized protein family (UPF0051) 246 479 7.3E-64 T 23-04-2016 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 RPE_RS08500 e2f39dd03f3aee8b53afb48014f5a75a 220 PANTHER PTHR19372 8 218 5.2E-72 T 23-04-2016 RPE_RS08500 e2f39dd03f3aee8b53afb48014f5a75a 220 Pfam PF00174 Oxidoreductase molybdopterin binding domain 57 200 1.2E-32 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 RPE_RS08500 e2f39dd03f3aee8b53afb48014f5a75a 220 SUPERFAMILY SSF56524 18 219 2.22E-61 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 RPE_RS08500 e2f39dd03f3aee8b53afb48014f5a75a 220 Gene3D G3DSA:3.90.420.10 32 217 4.0E-52 T 23-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 RPE_RS02105 009eba4fb94510898c102a306fe10d31 369 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 35 111 3.6E-5 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RPE_RS02105 009eba4fb94510898c102a306fe10d31 369 Gene3D G3DSA:3.40.50.300 19 169 9.3E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02105 009eba4fb94510898c102a306fe10d31 369 SUPERFAMILY SSF52540 32 219 9.66E-14 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02105 009eba4fb94510898c102a306fe10d31 369 PANTHER PTHR13779 20 209 6.2E-31 T 23-04-2016 RPE_RS02105 009eba4fb94510898c102a306fe10d31 369 PANTHER PTHR13779:SF23 20 209 6.2E-31 T 23-04-2016 RPE_RS01160 9cf63335a3a299c46e3eb368eedf2f83 184 SUPERFAMILY SSF52172 12 170 5.69E-31 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS01160 9cf63335a3a299c46e3eb368eedf2f83 184 Gene3D G3DSA:1.10.10.60 134 182 2.5E-29 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS01160 9cf63335a3a299c46e3eb368eedf2f83 184 PANTHER PTHR26402:SF344 13 124 5.8E-58 T 23-04-2016 RPE_RS01160 9cf63335a3a299c46e3eb368eedf2f83 184 PANTHER PTHR26402 13 124 5.8E-58 T 23-04-2016 RPE_RS01160 9cf63335a3a299c46e3eb368eedf2f83 184 Gene3D G3DSA:3.40.50.2300 14 133 9.4E-28 T 23-04-2016 RPE_RS01160 9cf63335a3a299c46e3eb368eedf2f83 184 Pfam PF00072 Response regulator receiver domain 16 124 4.0E-21 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS01160 9cf63335a3a299c46e3eb368eedf2f83 184 SMART SM00448 13 124 1.0E-23 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS17160 aa1bd2069dff311610bfdbf3db2024db 432 Gene3D G3DSA:3.20.20.370 67 265 4.9E-50 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RPE_RS17160 aa1bd2069dff311610bfdbf3db2024db 432 SUPERFAMILY SSF88713 64 262 3.46E-49 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RPE_RS17160 aa1bd2069dff311610bfdbf3db2024db 432 PANTHER PTHR10587:SF70 41 340 2.9E-86 T 23-04-2016 RPE_RS17160 aa1bd2069dff311610bfdbf3db2024db 432 Pfam PF01522 Polysaccharide deacetylase 76 196 2.7E-21 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RPE_RS17160 aa1bd2069dff311610bfdbf3db2024db 432 PANTHER PTHR10587 41 340 2.9E-86 T 23-04-2016 RPE_RS10250 52bb8d1ff4dff2eae6bdb23d9385c33d 256 Gene3D G3DSA:3.40.50.150 3 155 1.2E-32 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS10250 52bb8d1ff4dff2eae6bdb23d9385c33d 256 Pfam PF13489 Methyltransferase domain 15 142 2.5E-14 T 23-04-2016 RPE_RS10250 52bb8d1ff4dff2eae6bdb23d9385c33d 256 PANTHER PTHR10108 3 235 8.8E-65 T 23-04-2016 RPE_RS10250 52bb8d1ff4dff2eae6bdb23d9385c33d 256 Hamap MF_00560 Trans-aconitate 2-methyltransferase [tam]. 2 256 40.449 T 23-04-2016 IPR023506 Trans-aconitate 2-methyltransferase GO:0030798 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 RPE_RS10250 52bb8d1ff4dff2eae6bdb23d9385c33d 256 PANTHER PTHR10108:SF890 3 235 8.8E-65 T 23-04-2016 RPE_RS10250 52bb8d1ff4dff2eae6bdb23d9385c33d 256 SUPERFAMILY SSF53335 3 210 8.52E-32 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS10250 52bb8d1ff4dff2eae6bdb23d9385c33d 256 Gene3D G3DSA:1.10.150.290 182 237 2.8E-28 T 23-04-2016 IPR023149 Trans-aconitate 2-methyltransferase, C-terminal GO:0030798 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 RPE_RS12840 7287dcec91be34c1323b2e01c8117506 383 Pfam PF13180 PDZ domain 151 214 2.6E-10 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS12840 7287dcec91be34c1323b2e01c8117506 383 SMART SM00228 129 208 6.1E-9 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS12840 7287dcec91be34c1323b2e01c8117506 383 PANTHER PTHR22939:SF78 147 382 4.7E-72 T 23-04-2016 RPE_RS12840 7287dcec91be34c1323b2e01c8117506 383 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 24 222 2.2E-44 T 23-04-2016 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 RPE_RS12840 7287dcec91be34c1323b2e01c8117506 383 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 147 380 1.1E-47 T 23-04-2016 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 RPE_RS12840 7287dcec91be34c1323b2e01c8117506 383 Pfam PF02163 Peptidase family M50 23 368 2.2E-77 T 23-04-2016 IPR008915 Peptidase M50 GO:0004222|GO:0006508 RPE_RS12840 7287dcec91be34c1323b2e01c8117506 383 SUPERFAMILY SSF50156 122 216 6.7E-18 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS12840 7287dcec91be34c1323b2e01c8117506 383 PANTHER PTHR22939 147 382 4.7E-72 T 23-04-2016 RPE_RS12840 7287dcec91be34c1323b2e01c8117506 383 Gene3D G3DSA:2.30.42.10 119 217 4.5E-23 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS09995 d643d9bee8d17d3d0cb0ea1160eb7eed 462 PANTHER PTHR21337 3 451 0.0 T 23-04-2016 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 RPE_RS09995 d643d9bee8d17d3d0cb0ea1160eb7eed 462 TIGRFAM TIGR01358 DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase 5 447 2.4E-219 T 23-04-2016 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 RPE_RS09995 d643d9bee8d17d3d0cb0ea1160eb7eed 462 SUPERFAMILY SSF51569 2 446 1.61E-204 T 23-04-2016 RPE_RS09995 d643d9bee8d17d3d0cb0ea1160eb7eed 462 Pfam PF01474 Class-II DAHP synthetase family 5 442 6.7E-209 T 23-04-2016 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 RPE_RS11345 1984d15792a29555669f99b3d8ba92ac 568 PANTHER PTHR21000 23 565 4.3E-237 T 23-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RPE_RS11345 1984d15792a29555669f99b3d8ba92ac 568 PANTHER PTHR21000:SF14 23 565 4.3E-237 T 23-04-2016 RPE_RS11345 1984d15792a29555669f99b3d8ba92ac 568 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 121 131 - T 23-04-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RPE_RS11345 1984d15792a29555669f99b3d8ba92ac 568 Pfam PF00920 Dehydratase family 38 556 2.8E-173 T 23-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RPE_RS11345 1984d15792a29555669f99b3d8ba92ac 568 SUPERFAMILY SSF52016 376 562 2.28E-56 T 23-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RPE_RS11345 1984d15792a29555669f99b3d8ba92ac 568 SUPERFAMILY SSF143975 15 374 1.31E-114 T 23-04-2016 RPE_RS01700 623679d10422a343d72bff89eeec38f6 201 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 201 42.604 T 23-04-2016 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01700 623679d10422a343d72bff89eeec38f6 201 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 186 4.7E-80 T 23-04-2016 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01700 623679d10422a343d72bff89eeec38f6 201 PANTHER PTHR11670:SF12 1 199 3.8E-143 T 23-04-2016 RPE_RS01700 623679d10422a343d72bff89eeec38f6 201 PANTHER PTHR11670 1 199 3.8E-143 T 23-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01700 623679d10422a343d72bff89eeec38f6 201 Pfam PF00694 Aconitase C-terminal domain 1 123 6.6E-40 T 23-04-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RPE_RS01700 623679d10422a343d72bff89eeec38f6 201 SUPERFAMILY SSF52016 1 193 4.51E-60 T 23-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RPE_RS01700 623679d10422a343d72bff89eeec38f6 201 Gene3D G3DSA:3.20.19.10 1 193 4.7E-50 T 23-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RPE_RS18045 54b9a85cdb20464f326b7a0e64c7f017 722 PANTHER PTHR11908 119 718 6.5E-184 T 23-04-2016 RPE_RS18045 54b9a85cdb20464f326b7a0e64c7f017 722 PIRSF PIRSF036389 1 722 8.6E-230 T 23-04-2016 IPR012368 Oxidoreductase molybdopterin-binding subunit, IorB-related RPE_RS18045 54b9a85cdb20464f326b7a0e64c7f017 722 SMART SM01008 212 290 1.1E-9 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RPE_RS18045 54b9a85cdb20464f326b7a0e64c7f017 722 Gene3D G3DSA:3.30.365.10 387 549 1.3E-28 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS18045 54b9a85cdb20464f326b7a0e64c7f017 722 Gene3D G3DSA:3.30.365.10 550 718 6.5E-34 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS18045 54b9a85cdb20464f326b7a0e64c7f017 722 SUPERFAMILY SSF56003 10 246 2.3E-37 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS18045 54b9a85cdb20464f326b7a0e64c7f017 722 PANTHER PTHR11908:SF79 119 718 6.5E-184 T 23-04-2016 RPE_RS18045 54b9a85cdb20464f326b7a0e64c7f017 722 Gene3D G3DSA:3.90.1170.50 188 264 2.0E-17 T 23-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RPE_RS18045 54b9a85cdb20464f326b7a0e64c7f017 722 Gene3D G3DSA:3.30.365.10 17 187 2.9E-32 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS18045 54b9a85cdb20464f326b7a0e64c7f017 722 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 14 186 6.4E-12 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS18045 54b9a85cdb20464f326b7a0e64c7f017 722 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 314 550 1.5E-25 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS18045 54b9a85cdb20464f326b7a0e64c7f017 722 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 594 671 2.5E-11 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS18045 54b9a85cdb20464f326b7a0e64c7f017 722 SUPERFAMILY SSF56003 313 718 2.62E-102 T 23-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RPE_RS00365 358051459c3a65e2fb061d958694c9c2 306 PANTHER PTHR12418:SF18 28 160 1.9E-46 T 23-04-2016 RPE_RS00365 358051459c3a65e2fb061d958694c9c2 306 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 56 123 4.5E-11 T 23-04-2016 IPR003736 Phenylacetic acid degradation-related domain RPE_RS00365 358051459c3a65e2fb061d958694c9c2 306 Gene3D G3DSA:3.10.129.10 175 298 1.7E-16 T 23-04-2016 IPR029069 HotDog domain RPE_RS00365 358051459c3a65e2fb061d958694c9c2 306 SUPERFAMILY SSF54637 168 300 3.26E-17 T 23-04-2016 IPR029069 HotDog domain RPE_RS00365 358051459c3a65e2fb061d958694c9c2 306 PANTHER PTHR12418 28 160 1.9E-46 T 23-04-2016 RPE_RS00365 358051459c3a65e2fb061d958694c9c2 306 Pfam PF03061 Thioesterase superfamily 60 133 5.5E-16 T 23-04-2016 IPR006683 Thioesterase domain RPE_RS00365 358051459c3a65e2fb061d958694c9c2 306 Pfam PF03061 Thioesterase superfamily 214 286 2.5E-7 T 23-04-2016 IPR006683 Thioesterase domain RPE_RS00365 358051459c3a65e2fb061d958694c9c2 306 Gene3D G3DSA:3.10.129.10 23 146 2.0E-25 T 23-04-2016 IPR029069 HotDog domain RPE_RS00365 358051459c3a65e2fb061d958694c9c2 306 SUPERFAMILY SSF54637 23 146 1.13E-25 T 23-04-2016 IPR029069 HotDog domain RPE_RS13990 eecb26c9cedcf011b5b1f0b6ca19d4c0 452 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 5 438 36.792 T 23-04-2016 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00113|UniPathway: UPA00113|UniPathway: UPA00973 RPE_RS13990 eecb26c9cedcf011b5b1f0b6ca19d4c0 452 Gene3D G3DSA:2.160.10.10 318 438 1.4E-34 T 23-04-2016 RPE_RS13990 eecb26c9cedcf011b5b1f0b6ca19d4c0 452 Gene3D G3DSA:2.160.10.10 256 317 1.3E-11 T 23-04-2016 RPE_RS13990 eecb26c9cedcf011b5b1f0b6ca19d4c0 452 SUPERFAMILY SSF53448 9 255 2.29E-51 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS13990 eecb26c9cedcf011b5b1f0b6ca19d4c0 452 Gene3D G3DSA:3.90.550.10 8 249 1.2E-53 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS13990 eecb26c9cedcf011b5b1f0b6ca19d4c0 452 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 8 439 2.7E-144 T 23-04-2016 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00113|UniPathway: UPA00113|UniPathway: UPA00973 RPE_RS13990 eecb26c9cedcf011b5b1f0b6ca19d4c0 452 PANTHER PTHR22572:SF115 7 435 2.8E-169 T 23-04-2016 RPE_RS13990 eecb26c9cedcf011b5b1f0b6ca19d4c0 452 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 269 300 7.0E-8 T 23-04-2016 IPR001451 Hexapeptide repeat RPE_RS13990 eecb26c9cedcf011b5b1f0b6ca19d4c0 452 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 381 415 6.8E-6 T 23-04-2016 IPR001451 Hexapeptide repeat RPE_RS13990 eecb26c9cedcf011b5b1f0b6ca19d4c0 452 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 304 335 1.4E-6 T 23-04-2016 IPR001451 Hexapeptide repeat RPE_RS13990 eecb26c9cedcf011b5b1f0b6ca19d4c0 452 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 389 417 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 RPE_RS13990 eecb26c9cedcf011b5b1f0b6ca19d4c0 452 PANTHER PTHR22572 7 435 2.8E-169 T 23-04-2016 RPE_RS13990 eecb26c9cedcf011b5b1f0b6ca19d4c0 452 Pfam PF12804 MobA-like NTP transferase domain 9 133 1.1E-17 T 23-04-2016 IPR025877 MobA-like NTP transferase RPE_RS13990 eecb26c9cedcf011b5b1f0b6ca19d4c0 452 SUPERFAMILY SSF51161 253 424 7.83E-49 T 23-04-2016 IPR011004 Trimeric LpxA-like RPE_RS06930 1d899305dc8aad60f98aa7b4a2516209 205 Gene3D G3DSA:2.30.110.10 13 187 1.2E-64 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RPE_RS06930 1d899305dc8aad60f98aa7b4a2516209 205 PANTHER PTHR33798 5 205 4.6E-85 T 23-04-2016 RPE_RS06930 1d899305dc8aad60f98aa7b4a2516209 205 SUPERFAMILY SSF50475 3 187 1.77E-50 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RPE_RS06930 1d899305dc8aad60f98aa7b4a2516209 205 SMART SM00903 24 175 1.0E-16 T 23-04-2016 IPR002563 Flavin reductase like domain GO:0010181 RPE_RS06930 1d899305dc8aad60f98aa7b4a2516209 205 PANTHER PTHR33798:SF4 5 205 4.6E-85 T 23-04-2016 RPE_RS06930 1d899305dc8aad60f98aa7b4a2516209 205 Pfam PF01613 Flavin reductase like domain 26 166 7.9E-20 T 23-04-2016 IPR002563 Flavin reductase like domain GO:0010181 RPE_RS00945 94a0fd85e00ba38a187a54fc620e97f3 167 Gene3D G3DSA:1.10.10.10 26 95 4.9E-13 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS00945 94a0fd85e00ba38a187a54fc620e97f3 167 SUPERFAMILY SSF46785 26 157 2.72E-31 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS00945 94a0fd85e00ba38a187a54fc620e97f3 167 PANTHER PTHR33202:SF6 1 161 1.2E-72 T 23-04-2016 RPE_RS00945 94a0fd85e00ba38a187a54fc620e97f3 167 Pfam PF01475 Ferric uptake regulator family 34 151 3.4E-12 T 23-04-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 RPE_RS00945 94a0fd85e00ba38a187a54fc620e97f3 167 PANTHER PTHR33202 1 161 1.2E-72 T 23-04-2016 RPE_RS01440 6901a3eb833144cc8d982d6cd9331b24 327 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 29 116 1.4E-15 T 23-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 RPE_RS01440 6901a3eb833144cc8d982d6cd9331b24 327 PANTHER PTHR30349:SF5 27 327 2.1E-80 T 23-04-2016 RPE_RS01440 6901a3eb833144cc8d982d6cd9331b24 327 SUPERFAMILY SSF56349 159 325 2.09E-44 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RPE_RS01440 6901a3eb833144cc8d982d6cd9331b24 327 Gene3D G3DSA:1.10.443.10 159 320 1.4E-44 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 RPE_RS01440 6901a3eb833144cc8d982d6cd9331b24 327 SUPERFAMILY SSF47823 28 116 1.9E-11 T 23-04-2016 IPR010998 Integrase, Lambda-type, N-terminal RPE_RS01440 6901a3eb833144cc8d982d6cd9331b24 327 PANTHER PTHR30349 27 327 2.1E-80 T 23-04-2016 RPE_RS01440 6901a3eb833144cc8d982d6cd9331b24 327 Gene3D G3DSA:1.10.150.130 27 116 1.4E-22 T 23-04-2016 IPR023109 Integrase/recombinase, N-terminal RPE_RS01440 6901a3eb833144cc8d982d6cd9331b24 327 Pfam PF00589 Phage integrase family 164 310 8.5E-34 T 23-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RPE_RS01440 6901a3eb833144cc8d982d6cd9331b24 327 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 24 327 32.468 T 23-04-2016 IPR023009 Tyrosine recombinase XerC/XerD RPE_RS17080 dc2afb89c41c7fc3b309ffadc6f900c5 241 SMART SM00271 186 240 1.1E-8 T 23-04-2016 IPR001623 DnaJ domain RPE_RS17080 dc2afb89c41c7fc3b309ffadc6f900c5 241 Pfam PF00226 DnaJ domain 188 219 1.2E-6 T 23-04-2016 IPR001623 DnaJ domain RPE_RS17080 dc2afb89c41c7fc3b309ffadc6f900c5 241 Gene3D G3DSA:1.10.287.110 179 238 2.8E-17 T 23-04-2016 IPR001623 DnaJ domain RPE_RS17080 dc2afb89c41c7fc3b309ffadc6f900c5 241 PANTHER PTHR12763 3 239 6.1E-121 T 23-04-2016 RPE_RS17080 dc2afb89c41c7fc3b309ffadc6f900c5 241 SUPERFAMILY SSF46565 181 237 1.01E-14 T 23-04-2016 IPR001623 DnaJ domain RPE_RS17080 dc2afb89c41c7fc3b309ffadc6f900c5 241 PANTHER PTHR12763:SF17 3 239 6.1E-121 T 23-04-2016 RPE_RS18060 45f127ec898b124d25181dda78a85c44 230 Gene3D G3DSA:3.30.190.20 160 224 5.8E-48 T 23-04-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 RPE_RS18060 45f127ec898b124d25181dda78a85c44 230 Gene3D G3DSA:3.30.190.20 15 67 5.8E-48 T 23-04-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 RPE_RS18060 45f127ec898b124d25181dda78a85c44 230 SUPERFAMILY SSF56808 5 224 9.03E-83 T 23-04-2016 IPR023674 Ribosomal protein L1-like RPE_RS18060 45f127ec898b124d25181dda78a85c44 230 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 224 1.6E-100 T 23-04-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 RPE_RS18060 45f127ec898b124d25181dda78a85c44 230 PIRSF PIRSF002155 1 225 2.7E-77 T 23-04-2016 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 RPE_RS18060 45f127ec898b124d25181dda78a85c44 230 Gene3D G3DSA:3.40.50.790 68 158 3.1E-39 T 23-04-2016 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich RPE_RS18060 45f127ec898b124d25181dda78a85c44 230 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 1 228 43.118 T 23-04-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 RPE_RS18060 45f127ec898b124d25181dda78a85c44 230 ProSitePatterns PS01199 Ribosomal protein L1 signature. 119 138 - T 23-04-2016 IPR023673 Ribosomal protein L1, conserved site RPE_RS18060 45f127ec898b124d25181dda78a85c44 230 Pfam PF00687 Ribosomal protein L1p/L10e family 30 219 7.4E-53 T 23-04-2016 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein RPE_RS18060 45f127ec898b124d25181dda78a85c44 230 PANTHER PTHR23105 18 229 1.9E-83 T 23-04-2016 RPE_RS18060 45f127ec898b124d25181dda78a85c44 230 PANTHER PTHR23105:SF5 18 229 1.9E-83 T 23-04-2016 RPE_RS19130 48c3e1526aba9ada9c45f8db335cbc47 223 PANTHER PTHR30328:SF8 19 176 1.5E-22 T 23-04-2016 RPE_RS19130 48c3e1526aba9ada9c45f8db335cbc47 223 Pfam PF14514 Transcriptional regulator, TetR, C-terminal 90 213 2.9E-27 T 23-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RPE_RS19130 48c3e1526aba9ada9c45f8db335cbc47 223 PANTHER PTHR30328 19 176 1.5E-22 T 23-04-2016 RPE_RS19130 48c3e1526aba9ada9c45f8db335cbc47 223 SUPERFAMILY SSF46689 13 93 1.49E-12 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS19130 48c3e1526aba9ada9c45f8db335cbc47 223 Gene3D G3DSA:1.10.357.10 18 211 2.0E-35 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RPE_RS19130 48c3e1526aba9ada9c45f8db335cbc47 223 SUPERFAMILY SSF48498 93 211 1.38E-22 T 23-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RPE_RS19130 48c3e1526aba9ada9c45f8db335cbc47 223 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 23 36 6.6E-5 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS19130 48c3e1526aba9ada9c45f8db335cbc47 223 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 67 6.6E-5 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS19130 48c3e1526aba9ada9c45f8db335cbc47 223 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 68 8.6E-8 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS05860 7c62988cb3af635f747d00c033886361 138 PANTHER PTHR30435 1 137 3.5E-46 T 23-04-2016 RPE_RS05860 7c62988cb3af635f747d00c033886361 138 Pfam PF00460 Flagella basal body rod protein 9 37 2.6E-6 T 23-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RPE_RS05860 7c62988cb3af635f747d00c033886361 138 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 8 137 1.8E-45 T 23-04-2016 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 RPE_RS05860 7c62988cb3af635f747d00c033886361 138 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 90 134 4.1E-9 T 23-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RPE_RS05860 7c62988cb3af635f747d00c033886361 138 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 15 35 - T 23-04-2016 IPR019776 Flagellar basal body rod protein, conserved site RPE_RS05860 7c62988cb3af635f747d00c033886361 138 PANTHER PTHR30435:SF2 1 137 3.5E-46 T 23-04-2016 RPE_RS04720 fdeb8b1b1f667c3a6dd586e8101f6286 687 Gene3D G3DSA:3.40.50.880 256 510 1.5E-31 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RPE_RS04720 fdeb8b1b1f667c3a6dd586e8101f6286 687 SUPERFAMILY SSF52317 259 509 2.04E-51 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RPE_RS04720 fdeb8b1b1f667c3a6dd586e8101f6286 687 PANTHER PTHR37947 1 671 2.6E-104 T 23-04-2016 RPE_RS15660 b8ade15aec070cc26ae7ce6969c6368c 271 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 215 8.4E-30 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain RPE_RS15660 b8ade15aec070cc26ae7ce6969c6368c 271 SUPERFAMILY SSF52540 1 251 7.21E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15660 b8ade15aec070cc26ae7ce6969c6368c 271 PANTHER PTHR13696:SF1 1 257 3.7E-89 T 23-04-2016 RPE_RS15660 b8ade15aec070cc26ae7ce6969c6368c 271 Gene3D G3DSA:3.40.50.300 1 246 4.7E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15660 b8ade15aec070cc26ae7ce6969c6368c 271 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 2 266 1.7E-105 T 23-04-2016 IPR010223 ATP binding protein MinD, bacterial-type GO:0000918|GO:0016887 RPE_RS15660 b8ade15aec070cc26ae7ce6969c6368c 271 PANTHER PTHR13696 1 257 3.7E-89 T 23-04-2016 RPE_RS15660 b8ade15aec070cc26ae7ce6969c6368c 271 PIRSF PIRSF003092 1 271 1.5E-86 T 23-04-2016 IPR025501 ATP binding protein MinD RPE_RS01135 84365aeb94885ce84eb07e2ace153f45 278 PANTHER PTHR30399:SF3 45 275 6.5E-108 T 23-04-2016 RPE_RS01135 84365aeb94885ce84eb07e2ace153f45 278 PANTHER PTHR30399 45 275 6.5E-108 T 23-04-2016 RPE_RS01135 84365aeb94885ce84eb07e2ace153f45 278 Pfam PF01863 Protein of unknown function DUF45 67 267 6.4E-54 T 23-04-2016 IPR002725 Protein of unknown function DUF45 RPE_RS22390 b4b3c19ba76b9cb7d43c0650a7dae927 431 Pfam PF00815 Histidinol dehydrogenase 23 428 1.4E-167 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RPE_RS22390 b4b3c19ba76b9cb7d43c0650a7dae927 431 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 34 427 2.3E-159 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RPE_RS22390 b4b3c19ba76b9cb7d43c0650a7dae927 431 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 6 428 41.775 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RPE_RS22390 b4b3c19ba76b9cb7d43c0650a7dae927 431 PANTHER PTHR21256 12 431 4.5E-201 T 23-04-2016 RPE_RS22390 b4b3c19ba76b9cb7d43c0650a7dae927 431 Gene3D G3DSA:3.40.50.1980 28 240 1.0E-79 T 23-04-2016 RPE_RS22390 b4b3c19ba76b9cb7d43c0650a7dae927 431 SUPERFAMILY SSF53720 25 429 4.9E-84 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RPE_RS22390 b4b3c19ba76b9cb7d43c0650a7dae927 431 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 230 262 - T 23-04-2016 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RPE_RS22390 b4b3c19ba76b9cb7d43c0650a7dae927 431 PRINTS PR00083 Histidinol dehydrogenase signature 171 197 3.6E-84 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RPE_RS22390 b4b3c19ba76b9cb7d43c0650a7dae927 431 PRINTS PR00083 Histidinol dehydrogenase signature 362 380 3.6E-84 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RPE_RS22390 b4b3c19ba76b9cb7d43c0650a7dae927 431 PRINTS PR00083 Histidinol dehydrogenase signature 252 271 3.6E-84 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RPE_RS22390 b4b3c19ba76b9cb7d43c0650a7dae927 431 PRINTS PR00083 Histidinol dehydrogenase signature 321 346 3.6E-84 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RPE_RS22390 b4b3c19ba76b9cb7d43c0650a7dae927 431 PRINTS PR00083 Histidinol dehydrogenase signature 230 251 3.6E-84 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RPE_RS22390 b4b3c19ba76b9cb7d43c0650a7dae927 431 PRINTS PR00083 Histidinol dehydrogenase signature 137 163 3.6E-84 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RPE_RS22390 b4b3c19ba76b9cb7d43c0650a7dae927 431 PRINTS PR00083 Histidinol dehydrogenase signature 201 226 3.6E-84 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RPE_RS22390 b4b3c19ba76b9cb7d43c0650a7dae927 431 PRINTS PR00083 Histidinol dehydrogenase signature 34 58 3.6E-84 T 23-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RPE_RS22390 b4b3c19ba76b9cb7d43c0650a7dae927 431 PIRSF PIRSF000099 3 430 1.3E-160 T 23-04-2016 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 RPE_RS03095 83d4f5ee3fe750a95845fc8586fc4dd3 273 Pfam PF07728 AAA domain (dynein-related subfamily) 40 174 5.3E-37 T 23-04-2016 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 RPE_RS03095 83d4f5ee3fe750a95845fc8586fc4dd3 273 PANTHER PTHR22908 19 257 4.4E-38 T 23-04-2016 RPE_RS03095 83d4f5ee3fe750a95845fc8586fc4dd3 273 Gene3D G3DSA:3.40.50.300 34 187 3.9E-29 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS03095 83d4f5ee3fe750a95845fc8586fc4dd3 273 SUPERFAMILY SSF52540 34 232 3.3E-32 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS03095 83d4f5ee3fe750a95845fc8586fc4dd3 273 Pfam PF08406 CbbQ/NirQ/NorQ C-terminal 187 271 7.7E-29 T 23-04-2016 IPR013615 CbbQ/NirQ/NorQ, C-terminal RPE_RS10625 42f6d6d0a58bfa61c3024ee974222f2f 319 SUPERFAMILY SSF54211 137 280 3.79E-43 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RPE_RS10625 42f6d6d0a58bfa61c3024ee974222f2f 319 PANTHER PTHR33694 5 319 8.4E-107 T 23-04-2016 RPE_RS10625 42f6d6d0a58bfa61c3024ee974222f2f 319 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 5 291 2.0E-89 T 23-04-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 RPE_RS10625 42f6d6d0a58bfa61c3024ee974222f2f 319 PANTHER PTHR33694:SF1 5 319 8.4E-107 T 23-04-2016 RPE_RS10625 42f6d6d0a58bfa61c3024ee974222f2f 319 Gene3D G3DSA:3.30.230.20 5 129 3.5E-40 T 23-04-2016 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 RPE_RS10625 42f6d6d0a58bfa61c3024ee974222f2f 319 SUPERFAMILY SSF54211 5 129 4.63E-36 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RPE_RS10625 42f6d6d0a58bfa61c3024ee974222f2f 319 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 6 278 1.6E-96 T 23-04-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 RPE_RS10625 42f6d6d0a58bfa61c3024ee974222f2f 319 Hamap MF_00388 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [lpxC]. 4 283 40.129 T 23-04-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 RPE_RS10625 42f6d6d0a58bfa61c3024ee974222f2f 319 Gene3D G3DSA:3.30.1700.10 132 284 1.0E-49 T 23-04-2016 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 RPE_RS24235 ed78d31aa52900e6d2b64144540aa5cf 64 Pfam PF04588 Hypoxia induced protein conserved region 8 57 8.5E-12 T 23-04-2016 IPR007667 Hypoxia induced protein, domain RPE_RS14095 9d645fb81c1df7d51aeb4c11324156a1 69 PANTHER PTHR37550:SF2 1 66 1.2E-20 T 23-04-2016 RPE_RS14095 9d645fb81c1df7d51aeb4c11324156a1 69 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 8 56 2.1E-8 T 23-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 RPE_RS14095 9d645fb81c1df7d51aeb4c11324156a1 69 PANTHER PTHR37550 1 66 1.2E-20 T 23-04-2016 RPE_RS16750 07b259f23f09c85c0011e7d10dcbe1ed 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 194 0.001 T 23-04-2016 RPE_RS16750 07b259f23f09c85c0011e7d10dcbe1ed 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 1.1E-18 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS16750 07b259f23f09c85c0011e7d10dcbe1ed 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 1.1E-18 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS16750 07b259f23f09c85c0011e7d10dcbe1ed 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.1E-18 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS16750 07b259f23f09c85c0011e7d10dcbe1ed 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 1.1E-18 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS16750 07b259f23f09c85c0011e7d10dcbe1ed 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 1.1E-18 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS16750 07b259f23f09c85c0011e7d10dcbe1ed 246 PANTHER PTHR24322 12 190 5.8E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS16750 07b259f23f09c85c0011e7d10dcbe1ed 246 SUPERFAMILY SSF51735 3 226 1.74E-55 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS16750 07b259f23f09c85c0011e7d10dcbe1ed 246 Pfam PF00106 short chain dehydrogenase 9 200 5.7E-40 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS16750 07b259f23f09c85c0011e7d10dcbe1ed 246 Gene3D G3DSA:3.40.50.720 2 226 6.2E-56 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS19055 4ac47260be9f91268f5bf7ba1109cc52 299 SUPERFAMILY SSF46785 4 85 2.95E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS19055 4ac47260be9f91268f5bf7ba1109cc52 299 PANTHER PTHR30537 1 296 2.0E-144 T 23-04-2016 RPE_RS19055 4ac47260be9f91268f5bf7ba1109cc52 299 SUPERFAMILY SSF53850 90 293 4.34E-44 T 23-04-2016 RPE_RS19055 4ac47260be9f91268f5bf7ba1109cc52 299 Pfam PF03466 LysR substrate binding domain 89 292 8.9E-41 T 23-04-2016 IPR005119 LysR, substrate-binding RPE_RS19055 4ac47260be9f91268f5bf7ba1109cc52 299 Gene3D G3DSA:1.10.10.10 3 81 1.5E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS19055 4ac47260be9f91268f5bf7ba1109cc52 299 PANTHER PTHR30537:SF24 1 296 2.0E-144 T 23-04-2016 RPE_RS19055 4ac47260be9f91268f5bf7ba1109cc52 299 Gene3D G3DSA:3.40.190.10 92 191 2.0E-22 T 23-04-2016 RPE_RS19055 4ac47260be9f91268f5bf7ba1109cc52 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.1E-16 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS03470 c3ed7ea4e197346455b1b827563cea20 562 Pfam PF10082 Putative beta-barrel porin 2 173 562 7.8E-145 T 23-04-2016 IPR018759 Putative beta-barrel porin 2 RPE_RS09920 492aadc76da42c83210c55d8b95baede 319 SUPERFAMILY SSF51395 1 290 1.26E-69 T 23-04-2016 RPE_RS09920 492aadc76da42c83210c55d8b95baede 319 Pfam PF01207 Dihydrouridine synthase (Dus) 1 291 3.5E-79 T 23-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RPE_RS09920 492aadc76da42c83210c55d8b95baede 319 PIRSF PIRSF006621 1 316 7.1E-69 T 23-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RPE_RS09920 492aadc76da42c83210c55d8b95baede 319 PANTHER PTHR11082:SF29 1 312 8.3E-136 T 23-04-2016 RPE_RS09920 492aadc76da42c83210c55d8b95baede 319 Gene3D G3DSA:3.20.20.70 1 238 2.7E-71 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS09920 492aadc76da42c83210c55d8b95baede 319 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 1 309 5.0E-123 T 23-04-2016 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 RPE_RS09920 492aadc76da42c83210c55d8b95baede 319 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 1 311 46.712 T 23-04-2016 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 RPE_RS09920 492aadc76da42c83210c55d8b95baede 319 PANTHER PTHR11082 1 312 8.3E-136 T 23-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RPE_RS09920 492aadc76da42c83210c55d8b95baede 319 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 77 95 - T 23-04-2016 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 RPE_RS07120 e7aa9ad4a4bfe2a91ddf2a58e2176ac3 1058 Gene3D G3DSA:3.40.50.620 22 217 5.2E-128 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS07120 e7aa9ad4a4bfe2a91ddf2a58e2176ac3 1058 Gene3D G3DSA:3.40.50.620 488 760 5.2E-128 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS07120 e7aa9ad4a4bfe2a91ddf2a58e2176ac3 1058 Gene3D G3DSA:3.90.740.10 223 396 8.6E-41 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RPE_RS07120 e7aa9ad4a4bfe2a91ddf2a58e2176ac3 1058 Gene3D G3DSA:3.90.740.10 428 471 8.6E-41 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RPE_RS07120 e7aa9ad4a4bfe2a91ddf2a58e2176ac3 1058 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 67 78 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS07120 e7aa9ad4a4bfe2a91ddf2a58e2176ac3 1058 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 265 288 4.7E-14 T 23-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RPE_RS07120 e7aa9ad4a4bfe2a91ddf2a58e2176ac3 1058 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 60 71 4.7E-14 T 23-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RPE_RS07120 e7aa9ad4a4bfe2a91ddf2a58e2176ac3 1058 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 610 623 4.7E-14 T 23-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RPE_RS07120 e7aa9ad4a4bfe2a91ddf2a58e2176ac3 1058 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 11 1050 19.41 T 23-04-2016 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5 RPE_RS07120 e7aa9ad4a4bfe2a91ddf2a58e2176ac3 1058 SUPERFAMILY SSF47323 775 1051 4.8E-51 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS07120 e7aa9ad4a4bfe2a91ddf2a58e2176ac3 1058 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 23 958 1.3E-230 T 23-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RPE_RS07120 e7aa9ad4a4bfe2a91ddf2a58e2176ac3 1058 Gene3D G3DSA:1.10.730.10 766 946 6.5E-34 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS07120 e7aa9ad4a4bfe2a91ddf2a58e2176ac3 1058 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 37 763 5.0E-170 T 23-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS07120 e7aa9ad4a4bfe2a91ddf2a58e2176ac3 1058 PANTHER PTHR11946:SF11 15 286 0.0 T 23-04-2016 RPE_RS07120 e7aa9ad4a4bfe2a91ddf2a58e2176ac3 1058 PANTHER PTHR11946:SF11 428 508 0.0 T 23-04-2016 RPE_RS07120 e7aa9ad4a4bfe2a91ddf2a58e2176ac3 1058 PANTHER PTHR11946:SF11 537 1044 0.0 T 23-04-2016 RPE_RS07120 e7aa9ad4a4bfe2a91ddf2a58e2176ac3 1058 PANTHER PTHR11946:SF11 319 396 0.0 T 23-04-2016 RPE_RS07120 e7aa9ad4a4bfe2a91ddf2a58e2176ac3 1058 Pfam PF08264 Anticodon-binding domain of tRNA 808 938 2.2E-19 T 23-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 RPE_RS07120 e7aa9ad4a4bfe2a91ddf2a58e2176ac3 1058 SUPERFAMILY SSF50677 222 394 1.13E-33 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RPE_RS07120 e7aa9ad4a4bfe2a91ddf2a58e2176ac3 1058 SUPERFAMILY SSF50677 426 485 1.13E-33 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RPE_RS07120 e7aa9ad4a4bfe2a91ddf2a58e2176ac3 1058 PANTHER PTHR11946 15 286 0.0 T 23-04-2016 RPE_RS07120 e7aa9ad4a4bfe2a91ddf2a58e2176ac3 1058 PANTHER PTHR11946 428 508 0.0 T 23-04-2016 RPE_RS07120 e7aa9ad4a4bfe2a91ddf2a58e2176ac3 1058 PANTHER PTHR11946 537 1044 0.0 T 23-04-2016 RPE_RS07120 e7aa9ad4a4bfe2a91ddf2a58e2176ac3 1058 PANTHER PTHR11946 319 396 0.0 T 23-04-2016 RPE_RS07120 e7aa9ad4a4bfe2a91ddf2a58e2176ac3 1058 SUPERFAMILY SSF52374 12 219 4.1E-123 T 23-04-2016 RPE_RS07120 e7aa9ad4a4bfe2a91ddf2a58e2176ac3 1058 SUPERFAMILY SSF52374 485 509 4.1E-123 T 23-04-2016 RPE_RS07120 e7aa9ad4a4bfe2a91ddf2a58e2176ac3 1058 SUPERFAMILY SSF52374 538 772 4.1E-123 T 23-04-2016 RPE_RS23665 a923e22b4be92c638628aa7d6aa44fe2 405 PANTHER PTHR23502 15 394 2.1E-107 T 23-04-2016 RPE_RS23665 a923e22b4be92c638628aa7d6aa44fe2 405 SUPERFAMILY SSF103473 5 395 1.7E-63 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS23665 a923e22b4be92c638628aa7d6aa44fe2 405 Gene3D G3DSA:1.20.1250.20 12 195 3.6E-29 T 23-04-2016 RPE_RS23665 a923e22b4be92c638628aa7d6aa44fe2 405 PANTHER PTHR23502:SF19 15 394 2.1E-107 T 23-04-2016 RPE_RS23665 a923e22b4be92c638628aa7d6aa44fe2 405 Pfam PF07690 Major Facilitator Superfamily 19 235 2.8E-35 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RPE_RS23665 a923e22b4be92c638628aa7d6aa44fe2 405 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 12 391 1.7E-81 T 23-04-2016 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 RPE_RS23665 a923e22b4be92c638628aa7d6aa44fe2 405 Gene3D G3DSA:1.20.1250.20 212 401 1.6E-11 T 23-04-2016 RPE_RS10890 f47918e99b97aacd00016a5011bf78db 491 PANTHER PTHR23076 141 464 9.5E-30 T 23-04-2016 RPE_RS10890 f47918e99b97aacd00016a5011bf78db 491 SUPERFAMILY SSF140990 295 479 1.05E-23 T 23-04-2016 RPE_RS10890 f47918e99b97aacd00016a5011bf78db 491 SUPERFAMILY SSF52540 54 276 4.77E-37 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10890 f47918e99b97aacd00016a5011bf78db 491 Gene3D G3DSA:3.40.50.300 88 259 1.9E-38 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10890 f47918e99b97aacd00016a5011bf78db 491 ProSitePatterns PS00674 AAA-protein family signature. 194 212 - T 23-04-2016 IPR003960 ATPase, AAA-type, conserved site GO:0005524 RPE_RS10890 f47918e99b97aacd00016a5011bf78db 491 SMART SM00382 87 226 1.8E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS10890 f47918e99b97aacd00016a5011bf78db 491 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 92 223 1.4E-27 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RPE_RS10890 f47918e99b97aacd00016a5011bf78db 491 Pfam PF01434 Peptidase family M41 295 477 1.7E-10 T 23-04-2016 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 RPE_RS05880 eb319a46dfefbb820898764a2bec3db4 366 PRINTS PR01010 Flagellar P-ring protein signature 104 121 4.5E-84 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RPE_RS05880 eb319a46dfefbb820898764a2bec3db4 366 PRINTS PR01010 Flagellar P-ring protein signature 161 179 4.5E-84 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RPE_RS05880 eb319a46dfefbb820898764a2bec3db4 366 PRINTS PR01010 Flagellar P-ring protein signature 121 139 4.5E-84 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RPE_RS05880 eb319a46dfefbb820898764a2bec3db4 366 PRINTS PR01010 Flagellar P-ring protein signature 82 101 4.5E-84 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RPE_RS05880 eb319a46dfefbb820898764a2bec3db4 366 PRINTS PR01010 Flagellar P-ring protein signature 22 37 4.5E-84 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RPE_RS05880 eb319a46dfefbb820898764a2bec3db4 366 PRINTS PR01010 Flagellar P-ring protein signature 57 72 4.5E-84 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RPE_RS05880 eb319a46dfefbb820898764a2bec3db4 366 PRINTS PR01010 Flagellar P-ring protein signature 187 205 4.5E-84 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RPE_RS05880 eb319a46dfefbb820898764a2bec3db4 366 PRINTS PR01010 Flagellar P-ring protein signature 253 265 4.5E-84 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RPE_RS05880 eb319a46dfefbb820898764a2bec3db4 366 PRINTS PR01010 Flagellar P-ring protein signature 37 52 4.5E-84 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RPE_RS05880 eb319a46dfefbb820898764a2bec3db4 366 PANTHER PTHR30381:SF0 1 366 5.6E-163 T 23-04-2016 RPE_RS05880 eb319a46dfefbb820898764a2bec3db4 366 Pfam PF02119 Flagellar P-ring protein 22 365 3.8E-134 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RPE_RS05880 eb319a46dfefbb820898764a2bec3db4 366 PANTHER PTHR30381 1 366 5.6E-163 T 23-04-2016 RPE_RS05880 eb319a46dfefbb820898764a2bec3db4 366 Hamap MF_00416 Flagellar P-ring protein [flgI]. 3 366 36.866 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RPE_RS03690 48ffd1e89736f5a347b761f4a65f9d78 307 PANTHER PTHR18966:SF216 54 302 1.4E-90 T 23-04-2016 RPE_RS03690 48ffd1e89736f5a347b761f4a65f9d78 307 SUPERFAMILY SSF53850 67 303 1.58E-53 T 23-04-2016 RPE_RS03690 48ffd1e89736f5a347b761f4a65f9d78 307 SMART SM00079 77 301 0.0053 T 23-04-2016 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 RPE_RS03690 48ffd1e89736f5a347b761f4a65f9d78 307 PANTHER PTHR18966 54 302 1.4E-90 T 23-04-2016 RPE_RS03690 48ffd1e89736f5a347b761f4a65f9d78 307 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 78 303 2.3E-49 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RPE_RS03690 48ffd1e89736f5a347b761f4a65f9d78 307 Gene3D G3DSA:3.40.190.10 178 262 3.3E-17 T 23-04-2016 RPE_RS03690 48ffd1e89736f5a347b761f4a65f9d78 307 Gene3D G3DSA:3.40.190.10 77 163 1.6E-32 T 23-04-2016 RPE_RS03690 48ffd1e89736f5a347b761f4a65f9d78 307 Gene3D G3DSA:3.40.190.10 264 303 1.6E-32 T 23-04-2016 RPE_RS03690 48ffd1e89736f5a347b761f4a65f9d78 307 SMART SM00062 77 305 5.4E-46 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RPE_RS08585 6226d103d46eea36b324d11dac69a544 161 PANTHER PTHR10430 1 161 5.1E-73 T 23-04-2016 RPE_RS08585 6226d103d46eea36b324d11dac69a544 161 Gene3D G3DSA:3.40.30.10 1 161 1.3E-54 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS08585 6226d103d46eea36b324d11dac69a544 161 Pfam PF08534 Redoxin 4 158 7.7E-36 T 23-04-2016 IPR013740 Redoxin GO:0016491 RPE_RS08585 6226d103d46eea36b324d11dac69a544 161 SUPERFAMILY SSF52833 1 152 3.4E-31 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS13860 c3900ab73718a45a5c914c203a389938 456 Gene3D G3DSA:3.40.50.300 140 311 2.4E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS13860 c3900ab73718a45a5c914c203a389938 456 PANTHER PTHR32071:SF17 1 455 3.1E-247 T 23-04-2016 RPE_RS13860 c3900ab73718a45a5c914c203a389938 456 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 353 362 - T 23-04-2016 IPR025944 Sigma-54 interaction domain, conserved site RPE_RS13860 c3900ab73718a45a5c914c203a389938 456 SMART SM00448 3 116 1.1E-32 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS13860 c3900ab73718a45a5c914c203a389938 456 Pfam PF00158 Sigma-54 interaction domain 143 306 5.7E-54 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RPE_RS13860 c3900ab73718a45a5c914c203a389938 456 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 226 241 - T 23-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RPE_RS13860 c3900ab73718a45a5c914c203a389938 456 SMART SM00382 162 303 3.4E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS13860 c3900ab73718a45a5c914c203a389938 456 Pfam PF02954 Bacterial regulatory protein, Fis family 413 452 5.3E-10 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RPE_RS13860 c3900ab73718a45a5c914c203a389938 456 Gene3D G3DSA:1.10.10.60 408 454 1.2E-7 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS13860 c3900ab73718a45a5c914c203a389938 456 SUPERFAMILY SSF52172 4 186 3.13E-40 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS13860 c3900ab73718a45a5c914c203a389938 456 SUPERFAMILY SSF52540 143 374 6.06E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS13860 c3900ab73718a45a5c914c203a389938 456 Gene3D G3DSA:1.10.8.60 313 388 4.4E-22 T 23-04-2016 RPE_RS13860 c3900ab73718a45a5c914c203a389938 456 Gene3D G3DSA:3.40.50.2300 4 128 6.2E-35 T 23-04-2016 RPE_RS13860 c3900ab73718a45a5c914c203a389938 456 PANTHER PTHR32071 1 455 3.1E-247 T 23-04-2016 RPE_RS13860 c3900ab73718a45a5c914c203a389938 456 SUPERFAMILY SSF46689 353 455 1.88E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS13860 c3900ab73718a45a5c914c203a389938 456 Pfam PF00072 Response regulator receiver domain 5 114 1.1E-28 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS01145 97226eba868bd4d54e2f8ac8e1bb700a 269 Pfam PF01061 ABC-2 type transporter 29 223 5.0E-10 T 23-04-2016 IPR013525 ABC-2 type transporter GO:0016020 RPE_RS01145 97226eba868bd4d54e2f8ac8e1bb700a 269 PANTHER PTHR30294:SF21 5 266 9.5E-62 T 23-04-2016 RPE_RS01145 97226eba868bd4d54e2f8ac8e1bb700a 269 PANTHER PTHR30294 5 266 9.5E-62 T 23-04-2016 RPE_RS07385 3caa89dbf355f659d623fa0bdffa4074 345 PANTHER PTHR10314 10 330 6.1E-122 T 23-04-2016 RPE_RS07385 3caa89dbf355f659d623fa0bdffa4074 345 PANTHER PTHR10314:SF36 10 330 6.1E-122 T 23-04-2016 RPE_RS07385 3caa89dbf355f659d623fa0bdffa4074 345 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 26 316 1.9E-76 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RPE_RS07385 3caa89dbf355f659d623fa0bdffa4074 345 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 50 63 - T 23-04-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 RPE_RS07385 3caa89dbf355f659d623fa0bdffa4074 345 SUPERFAMILY SSF53686 12 327 3.27E-91 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RPE_RS07385 3caa89dbf355f659d623fa0bdffa4074 345 Gene3D G3DSA:3.40.50.1100 78 331 7.6E-69 T 23-04-2016 RPE_RS00840 4f7ef4cf0771ab69f84c2993ab42f8dd 241 SUPERFAMILY SSF51735 3 240 6.47E-77 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS00840 4f7ef4cf0771ab69f84c2993ab42f8dd 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 3.5E-13 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00840 4f7ef4cf0771ab69f84c2993ab42f8dd 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 3.5E-13 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00840 4f7ef4cf0771ab69f84c2993ab42f8dd 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 3.5E-13 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00840 4f7ef4cf0771ab69f84c2993ab42f8dd 241 PANTHER PTHR24322:SF559 147 179 4.9E-69 T 23-04-2016 RPE_RS00840 4f7ef4cf0771ab69f84c2993ab42f8dd 241 PANTHER PTHR24322:SF559 7 131 4.9E-69 T 23-04-2016 RPE_RS00840 4f7ef4cf0771ab69f84c2993ab42f8dd 241 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 237 3.3E-60 T 23-04-2016 RPE_RS00840 4f7ef4cf0771ab69f84c2993ab42f8dd 241 Gene3D G3DSA:3.40.50.720 3 240 1.0E-78 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS00840 4f7ef4cf0771ab69f84c2993ab42f8dd 241 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 178 1.1E-4 T 23-04-2016 RPE_RS00840 4f7ef4cf0771ab69f84c2993ab42f8dd 241 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 134 162 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RPE_RS00840 4f7ef4cf0771ab69f84c2993ab42f8dd 241 TIGRFAM TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase 3 240 6.9E-112 T 23-04-2016 IPR011283 Acetoacetyl-CoA reductase GO:0005737|GO:0018454|GO:0042619|GO:0055114 KEGG: 00630+1.1.1.36|KEGG: 00650+1.1.1.36|MetaCyc: PWY-5676|MetaCyc: PWY-5741|MetaCyc: PWY-7216|UniPathway: UPA00917 RPE_RS00840 4f7ef4cf0771ab69f84c2993ab42f8dd 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 7.9E-46 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00840 4f7ef4cf0771ab69f84c2993ab42f8dd 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 202 222 7.9E-46 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00840 4f7ef4cf0771ab69f84c2993ab42f8dd 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 7.9E-46 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00840 4f7ef4cf0771ab69f84c2993ab42f8dd 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 7.9E-46 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00840 4f7ef4cf0771ab69f84c2993ab42f8dd 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 7.9E-46 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00840 4f7ef4cf0771ab69f84c2993ab42f8dd 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 7.9E-46 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00840 4f7ef4cf0771ab69f84c2993ab42f8dd 241 PANTHER PTHR24322 147 179 4.9E-69 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00840 4f7ef4cf0771ab69f84c2993ab42f8dd 241 PANTHER PTHR24322 7 131 4.9E-69 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS01395 4191f73899011eebdb32cc7a74e05566 324 PIRSF PIRSF001415 1 323 3.1E-134 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS01395 4191f73899011eebdb32cc7a74e05566 324 Gene3D G3DSA:3.20.20.70 5 321 9.5E-131 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS01395 4191f73899011eebdb32cc7a74e05566 324 SUPERFAMILY SSF51569 5 321 1.01E-124 T 23-04-2016 RPE_RS01395 4191f73899011eebdb32cc7a74e05566 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 123 137 9.9E-50 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS01395 4191f73899011eebdb32cc7a74e05566 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 297 316 9.9E-50 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS01395 4191f73899011eebdb32cc7a74e05566 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 267 282 9.9E-50 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS01395 4191f73899011eebdb32cc7a74e05566 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 153 172 9.9E-50 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS01395 4191f73899011eebdb32cc7a74e05566 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 242 258 9.9E-50 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS01395 4191f73899011eebdb32cc7a74e05566 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 191 210 9.9E-50 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS01395 4191f73899011eebdb32cc7a74e05566 324 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 242 254 - T 23-04-2016 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS01395 4191f73899011eebdb32cc7a74e05566 324 SMART SM01004 5 323 2.3E-198 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS01395 4191f73899011eebdb32cc7a74e05566 324 Pfam PF00490 Delta-aminolevulinic acid dehydratase 8 321 1.0E-129 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS01395 4191f73899011eebdb32cc7a74e05566 324 PANTHER PTHR11458:SF1 7 320 4.1E-166 T 23-04-2016 RPE_RS01395 4191f73899011eebdb32cc7a74e05566 324 PANTHER PTHR11458 7 320 4.1E-166 T 23-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RPE_RS21365 f4aed697dcfe357ffc37e41444f8e8ce 561 SUPERFAMILY SSF55785 20 114 7.5E-26 T 23-04-2016 IPR000014 PAS domain RPE_RS21365 f4aed697dcfe357ffc37e41444f8e8ce 561 Gene3D G3DSA:3.30.450.20 23 114 5.9E-24 T 23-04-2016 RPE_RS21365 f4aed697dcfe357ffc37e41444f8e8ce 561 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 358 554 1.8E-35 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS21365 f4aed697dcfe357ffc37e41444f8e8ce 561 Pfam PF00672 HAMP domain 196 262 5.5E-8 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS21365 f4aed697dcfe357ffc37e41444f8e8ce 561 PANTHER PTHR32089:SF40 279 558 7.7E-203 T 23-04-2016 RPE_RS21365 f4aed697dcfe357ffc37e41444f8e8ce 561 PANTHER PTHR32089:SF40 47 249 7.7E-203 T 23-04-2016 RPE_RS21365 f4aed697dcfe357ffc37e41444f8e8ce 561 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 399 426 8.8E-20 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS21365 f4aed697dcfe357ffc37e41444f8e8ce 561 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 321 350 8.8E-20 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS21365 f4aed697dcfe357ffc37e41444f8e8ce 561 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 476 505 8.8E-20 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS21365 f4aed697dcfe357ffc37e41444f8e8ce 561 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 428 457 8.8E-20 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS21365 f4aed697dcfe357ffc37e41444f8e8ce 561 SUPERFAMILY SSF58104 307 554 2.75E-62 T 23-04-2016 RPE_RS21365 f4aed697dcfe357ffc37e41444f8e8ce 561 SUPERFAMILY SSF58104 237 269 2.75E-62 T 23-04-2016 RPE_RS21365 f4aed697dcfe357ffc37e41444f8e8ce 561 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 24 113 1.5E-12 T 23-04-2016 IPR000014 PAS domain RPE_RS21365 f4aed697dcfe357ffc37e41444f8e8ce 561 SMART SM00086 80 121 0.0023 T 23-04-2016 IPR001610 PAC motif RPE_RS21365 f4aed697dcfe357ffc37e41444f8e8ce 561 Pfam PF08447 PAS fold 31 112 4.8E-17 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 RPE_RS21365 f4aed697dcfe357ffc37e41444f8e8ce 561 SMART SM00304 215 267 0.0066 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS21365 f4aed697dcfe357ffc37e41444f8e8ce 561 SMART SM00283 308 555 1.3E-46 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS21365 f4aed697dcfe357ffc37e41444f8e8ce 561 Gene3D G3DSA:1.10.287.950 317 525 2.1E-47 T 23-04-2016 RPE_RS21365 f4aed697dcfe357ffc37e41444f8e8ce 561 PANTHER PTHR32089 279 558 7.7E-203 T 23-04-2016 RPE_RS21365 f4aed697dcfe357ffc37e41444f8e8ce 561 PANTHER PTHR32089 47 249 7.7E-203 T 23-04-2016 RPE_RS24475 34a17c7b530b8873a83b98476cdaafc6 620 PANTHER PTHR11528:SF44 13 620 3.6E-264 T 23-04-2016 RPE_RS24475 34a17c7b530b8873a83b98476cdaafc6 620 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 33 156 2.3E-12 T 23-04-2016 RPE_RS24475 34a17c7b530b8873a83b98476cdaafc6 620 SUPERFAMILY SSF110942 508 617 2.35E-23 T 23-04-2016 RPE_RS24475 34a17c7b530b8873a83b98476cdaafc6 620 Gene3D G3DSA:3.30.565.10 10 236 2.1E-75 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS24475 34a17c7b530b8873a83b98476cdaafc6 620 PIRSF PIRSF002583 2 620 1.7E-185 T 23-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 RPE_RS24475 34a17c7b530b8873a83b98476cdaafc6 620 PANTHER PTHR11528 13 620 3.6E-264 T 23-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 RPE_RS24475 34a17c7b530b8873a83b98476cdaafc6 620 Pfam PF00183 Hsp90 protein 222 618 4.2E-98 T 23-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 RPE_RS24475 34a17c7b530b8873a83b98476cdaafc6 620 SUPERFAMILY SSF55874 9 219 3.59E-59 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS24475 34a17c7b530b8873a83b98476cdaafc6 620 Hamap MF_00505 Chaperone protein HtpG [htpG]. 6 617 28.486 T 23-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 RPE_RS24475 34a17c7b530b8873a83b98476cdaafc6 620 SMART SM00387 31 190 5.6E-5 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS24475 34a17c7b530b8873a83b98476cdaafc6 620 SUPERFAMILY SSF54211 229 478 3.19E-79 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RPE_RS24475 34a17c7b530b8873a83b98476cdaafc6 620 PRINTS PR00775 90kDa heat shock protein signature 123 145 1.1E-59 T 23-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RPE_RS24475 34a17c7b530b8873a83b98476cdaafc6 620 PRINTS PR00775 90kDa heat shock protein signature 97 114 1.1E-59 T 23-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RPE_RS24475 34a17c7b530b8873a83b98476cdaafc6 620 PRINTS PR00775 90kDa heat shock protein signature 196 214 1.1E-59 T 23-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RPE_RS24475 34a17c7b530b8873a83b98476cdaafc6 620 PRINTS PR00775 90kDa heat shock protein signature 9 29 1.1E-59 T 23-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RPE_RS24475 34a17c7b530b8873a83b98476cdaafc6 620 PRINTS PR00775 90kDa heat shock protein signature 79 96 1.1E-59 T 23-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RPE_RS24475 34a17c7b530b8873a83b98476cdaafc6 620 PRINTS PR00775 90kDa heat shock protein signature 30 52 1.1E-59 T 23-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RPE_RS24475 34a17c7b530b8873a83b98476cdaafc6 620 PRINTS PR00775 90kDa heat shock protein signature 178 195 1.1E-59 T 23-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RPE_RS05675 b8a67bd9dba0c15ceba0b939a3e75a88 358 PANTHER PTHR40253:SF6 1 353 1.7E-118 T 23-04-2016 RPE_RS05675 b8a67bd9dba0c15ceba0b939a3e75a88 358 PANTHER PTHR40253 1 353 1.7E-118 T 23-04-2016 RPE_RS05675 b8a67bd9dba0c15ceba0b939a3e75a88 358 Pfam PF10098 Uncharacterised protein conserved in bacteria (DUF2336) 89 346 2.1E-55 T 23-04-2016 IPR019285 Protein of unknown function DUF2336 RPE_RS19830 1ed4ff661f7366aaad199ff4b48ea97e 226 SUPERFAMILY SSF52540 2 208 1.07E-37 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS19830 1ed4ff661f7366aaad199ff4b48ea97e 226 PANTHER PTHR13696 1 216 2.7E-75 T 23-04-2016 RPE_RS19830 1ed4ff661f7366aaad199ff4b48ea97e 226 PANTHER PTHR13696:SF66 1 216 2.7E-75 T 23-04-2016 RPE_RS19830 1ed4ff661f7366aaad199ff4b48ea97e 226 Gene3D G3DSA:3.40.50.300 2 210 3.2E-37 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS19830 1ed4ff661f7366aaad199ff4b48ea97e 226 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 4 156 1.0E-24 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain RPE_RS19830 1ed4ff661f7366aaad199ff4b48ea97e 226 PIRSF PIRSF009320 1 218 9.0E-43 T 23-04-2016 RPE_RS20130 57d15f8cdab25aa0c4f2f959f3df6ff4 302 Pfam PF01464 Transglycosylase SLT domain 105 203 2.0E-21 T 23-04-2016 IPR008258 Transglycosylase SLT domain 1 RPE_RS20130 57d15f8cdab25aa0c4f2f959f3df6ff4 302 PANTHER PTHR21666 87 225 8.4E-32 T 23-04-2016 RPE_RS20130 57d15f8cdab25aa0c4f2f959f3df6ff4 302 Gene3D G3DSA:1.10.530.10 100 227 1.6E-41 T 23-04-2016 RPE_RS20130 57d15f8cdab25aa0c4f2f959f3df6ff4 302 SUPERFAMILY SSF53955 94 226 4.3E-39 T 23-04-2016 IPR023346 Lysozyme-like domain RPE_RS15595 e6bd3d8c2b7ea262de1cff356dd47678 293 PIRSF PIRSF011468 1 289 4.3E-160 T 23-04-2016 IPR010306 Phosphonate metabolism PhnJ GO:0016829|GO:0019700|GO:0042916 KEGG: 00440+4.7.1.1|MetaCyc: PWY-7399 RPE_RS15595 e6bd3d8c2b7ea262de1cff356dd47678 293 Pfam PF06007 Phosphonate metabolism protein PhnJ 5 276 1.1E-146 T 23-04-2016 IPR010306 Phosphonate metabolism PhnJ GO:0016829|GO:0019700|GO:0042916 KEGG: 00440+4.7.1.1|MetaCyc: PWY-7399 RPE_RS06850 c6d6bce40ec9fcd26d854885955b2e21 322 Gene3D G3DSA:3.40.190.10 97 182 4.0E-17 T 23-04-2016 RPE_RS06850 c6d6bce40ec9fcd26d854885955b2e21 322 PANTHER PTHR30126 8 313 7.1E-124 T 23-04-2016 RPE_RS06850 c6d6bce40ec9fcd26d854885955b2e21 322 Gene3D G3DSA:3.40.190.10 183 267 6.9E-27 T 23-04-2016 RPE_RS06850 c6d6bce40ec9fcd26d854885955b2e21 322 SUPERFAMILY SSF46785 8 109 1.06E-19 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS06850 c6d6bce40ec9fcd26d854885955b2e21 322 SUPERFAMILY SSF53850 96 302 9.31E-48 T 23-04-2016 RPE_RS06850 c6d6bce40ec9fcd26d854885955b2e21 322 Pfam PF03466 LysR substrate binding domain 95 297 7.5E-54 T 23-04-2016 IPR005119 LysR, substrate-binding RPE_RS06850 c6d6bce40ec9fcd26d854885955b2e21 322 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 69 2.0E-17 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS06850 c6d6bce40ec9fcd26d854885955b2e21 322 Gene3D G3DSA:1.10.10.10 9 93 1.2E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS06850 c6d6bce40ec9fcd26d854885955b2e21 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 5.0E-7 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS06850 c6d6bce40ec9fcd26d854885955b2e21 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 5.0E-7 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS06850 c6d6bce40ec9fcd26d854885955b2e21 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 5.0E-7 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS06850 c6d6bce40ec9fcd26d854885955b2e21 322 PANTHER PTHR30126:SF5 8 313 7.1E-124 T 23-04-2016 RPE_RS04205 90437b8117c85be712d8a528dc17cc22 294 SUPERFAMILY SSF101478 4 289 7.72E-78 T 23-04-2016 IPR005502 ADP-ribosylation/Crystallin J1 RPE_RS04205 90437b8117c85be712d8a528dc17cc22 294 PANTHER PTHR16222:SF12 1 294 2.0E-56 T 23-04-2016 RPE_RS04205 90437b8117c85be712d8a528dc17cc22 294 Pfam PF03747 ADP-ribosylglycohydrolase 12 266 2.5E-60 T 23-04-2016 IPR005502 ADP-ribosylation/Crystallin J1 RPE_RS04205 90437b8117c85be712d8a528dc17cc22 294 PANTHER PTHR16222 1 294 2.0E-56 T 23-04-2016 RPE_RS04205 90437b8117c85be712d8a528dc17cc22 294 TIGRFAM TIGR02662 dinitro_DRAG: ADP-ribosyl-[dinitrogen reductase] hydrolase 7 290 4.7E-132 T 23-04-2016 IPR013479 ADP-ribosyl-dinitrogen reductase hydrolase RPE_RS07595 f66011b493b761ed142fbf83d56bd411 516 SUPERFAMILY SSF52374 32 163 4.5E-16 T 23-04-2016 RPE_RS07595 f66011b493b761ed142fbf83d56bd411 516 Pfam PF01467 Cytidylyltransferase-like 35 120 1.1E-6 T 23-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RPE_RS07595 f66011b493b761ed142fbf83d56bd411 516 PANTHER PTHR10584 180 500 6.3E-42 T 23-04-2016 RPE_RS07595 f66011b493b761ed142fbf83d56bd411 516 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 32 95 5.2E-7 T 23-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RPE_RS07595 f66011b493b761ed142fbf83d56bd411 516 Gene3D G3DSA:3.40.50.620 30 150 2.1E-21 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS07595 f66011b493b761ed142fbf83d56bd411 516 PANTHER PTHR10584:SF166 180 500 6.3E-42 T 23-04-2016 RPE_RS07595 f66011b493b761ed142fbf83d56bd411 516 Pfam PF00294 pfkB family carbohydrate kinase 198 487 4.8E-18 T 23-04-2016 IPR011611 Carbohydrate kinase PfkB RPE_RS07595 f66011b493b761ed142fbf83d56bd411 516 SUPERFAMILY SSF53613 198 491 1.09E-30 T 23-04-2016 IPR029056 Ribokinase-like RPE_RS07595 f66011b493b761ed142fbf83d56bd411 516 Gene3D G3DSA:3.40.1190.20 198 502 5.0E-28 T 23-04-2016 IPR029056 Ribokinase-like RPE_RS01630 656af788969701a4b80e00ee197a3e7d 43 PRINTS PR00674 Light harvesting protein B chain signature 24 41 1.1E-12 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS01630 656af788969701a4b80e00ee197a3e7d 43 PRINTS PR00674 Light harvesting protein B chain signature 4 24 1.1E-12 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS01630 656af788969701a4b80e00ee197a3e7d 43 PIRSF PIRSF002900 1 43 4.6E-16 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS01630 656af788969701a4b80e00ee197a3e7d 43 Gene3D G3DSA:1.20.5.250 4 42 2.1E-21 T 23-04-2016 RPE_RS01630 656af788969701a4b80e00ee197a3e7d 43 SUPERFAMILY SSF56918 4 42 6.02E-14 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS01630 656af788969701a4b80e00ee197a3e7d 43 ProSitePatterns PS00969 Antenna complexes beta subunits signature. 9 40 - T 23-04-2016 IPR023623 Antenna complex, beta subunit, conserved site RPE_RS01630 656af788969701a4b80e00ee197a3e7d 43 Pfam PF00556 Antenna complex alpha/beta subunit 9 42 2.7E-10 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS08630 3fc4ede26507afa848545e3c735f8ee5 871 SUPERFAMILY SSF53706 220 652 1.48E-70 T 23-04-2016 RPE_RS08630 3fc4ede26507afa848545e3c735f8ee5 871 SUPERFAMILY SSF54292 4 78 7.56E-20 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RPE_RS08630 3fc4ede26507afa848545e3c735f8ee5 871 Gene3D G3DSA:2.40.40.20 789 854 9.7E-7 T 23-04-2016 RPE_RS08630 3fc4ede26507afa848545e3c735f8ee5 871 Gene3D G3DSA:2.20.25.90 228 273 4.0E-12 T 23-04-2016 RPE_RS08630 3fc4ede26507afa848545e3c735f8ee5 871 PANTHER PTHR11615:SF134 708 827 9.0E-201 T 23-04-2016 RPE_RS08630 3fc4ede26507afa848545e3c735f8ee5 871 PANTHER PTHR11615:SF134 4 315 9.0E-201 T 23-04-2016 RPE_RS08630 3fc4ede26507afa848545e3c735f8ee5 871 PANTHER PTHR11615:SF134 359 424 9.0E-201 T 23-04-2016 RPE_RS08630 3fc4ede26507afa848545e3c735f8ee5 871 PANTHER PTHR11615:SF134 465 661 9.0E-201 T 23-04-2016 RPE_RS08630 3fc4ede26507afa848545e3c735f8ee5 871 Pfam PF00384 Molybdopterin oxidoreductase 536 633 1.0E-9 T 23-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 RPE_RS08630 3fc4ede26507afa848545e3c735f8ee5 871 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 89 126 6.9E-14 T 23-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 RPE_RS08630 3fc4ede26507afa848545e3c735f8ee5 871 SUPERFAMILY SSF54862 83 211 1.42E-30 T 23-04-2016 RPE_RS08630 3fc4ede26507afa848545e3c735f8ee5 871 Gene3D G3DSA:3.30.70.20 148 158 5.1E-4 T 23-04-2016 RPE_RS08630 3fc4ede26507afa848545e3c735f8ee5 871 Gene3D G3DSA:3.30.70.20 199 227 5.1E-4 T 23-04-2016 RPE_RS08630 3fc4ede26507afa848545e3c735f8ee5 871 Pfam PF01568 Molydopterin dinucleotide binding domain 790 854 3.5E-6 T 23-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 RPE_RS08630 3fc4ede26507afa848545e3c735f8ee5 871 Gene3D G3DSA:3.40.50.740 304 335 1.4E-24 T 23-04-2016 RPE_RS08630 3fc4ede26507afa848545e3c735f8ee5 871 Gene3D G3DSA:3.40.50.740 490 634 1.4E-24 T 23-04-2016 RPE_RS08630 3fc4ede26507afa848545e3c735f8ee5 871 SUPERFAMILY SSF50692 783 853 3.52E-7 T 23-04-2016 IPR009010 Aspartate decarboxylase-like domain RPE_RS08630 3fc4ede26507afa848545e3c735f8ee5 871 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 222 271 7.6E-9 T 23-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 RPE_RS08630 3fc4ede26507afa848545e3c735f8ee5 871 SMART SM00926 222 276 7.5E-11 T 23-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 RPE_RS08630 3fc4ede26507afa848545e3c735f8ee5 871 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 151 161 - T 23-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 RPE_RS08630 3fc4ede26507afa848545e3c735f8ee5 871 Gene3D G3DSA:3.10.20.30 4 84 2.2E-9 T 23-04-2016 IPR012675 Beta-grasp domain RPE_RS08630 3fc4ede26507afa848545e3c735f8ee5 871 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 5 633 7.2E-166 T 23-04-2016 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 RPE_RS08630 3fc4ede26507afa848545e3c735f8ee5 871 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 32 49 - T 23-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 RPE_RS08630 3fc4ede26507afa848545e3c735f8ee5 871 SMART SM00929 89 129 2.0E-17 T 23-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 RPE_RS08630 3fc4ede26507afa848545e3c735f8ee5 871 PANTHER PTHR11615 708 827 9.0E-201 T 23-04-2016 RPE_RS08630 3fc4ede26507afa848545e3c735f8ee5 871 PANTHER PTHR11615 4 315 9.0E-201 T 23-04-2016 RPE_RS08630 3fc4ede26507afa848545e3c735f8ee5 871 PANTHER PTHR11615 359 424 9.0E-201 T 23-04-2016 RPE_RS08630 3fc4ede26507afa848545e3c735f8ee5 871 PANTHER PTHR11615 465 661 9.0E-201 T 23-04-2016 RPE_RS08630 3fc4ede26507afa848545e3c735f8ee5 871 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 227 245 - T 23-04-2016 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 RPE_RS08630 3fc4ede26507afa848545e3c735f8ee5 871 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 4 79 3.0E-16 T 23-04-2016 RPE_RS02520 6f3fc2d9ab65a32858e6df4f0784c4ab 372 Gene3D G3DSA:3.30.70.20 186 254 8.6E-7 T 23-04-2016 RPE_RS02520 6f3fc2d9ab65a32858e6df4f0784c4ab 372 PANTHER PTHR30002:SF4 1 366 1.8E-150 T 23-04-2016 RPE_RS02520 6f3fc2d9ab65a32858e6df4f0784c4ab 372 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 188 199 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RPE_RS02520 6f3fc2d9ab65a32858e6df4f0784c4ab 372 Gene3D G3DSA:1.25.10.10 299 368 3.5E-6 T 23-04-2016 IPR011989 Armadillo-like helical RPE_RS02520 6f3fc2d9ab65a32858e6df4f0784c4ab 372 Pfam PF08331 Domain of unknown function (DUF1730) 59 135 5.3E-25 T 23-04-2016 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700|UniPathway: UPA00392 RPE_RS02520 6f3fc2d9ab65a32858e6df4f0784c4ab 372 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 3 310 45.219 T 23-04-2016 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700|UniPathway: UPA00392 RPE_RS02520 6f3fc2d9ab65a32858e6df4f0784c4ab 372 PANTHER PTHR30002 1 366 1.8E-150 T 23-04-2016 RPE_RS02520 6f3fc2d9ab65a32858e6df4f0784c4ab 372 Pfam PF13484 4Fe-4S double cluster binding domain 187 251 3.9E-19 T 23-04-2016 RPE_RS02520 6f3fc2d9ab65a32858e6df4f0784c4ab 372 SUPERFAMILY SSF54862 181 265 4.14E-16 T 23-04-2016 RPE_RS02520 6f3fc2d9ab65a32858e6df4f0784c4ab 372 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 11 342 4.2E-138 T 23-04-2016 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700|UniPathway: UPA00392 RPE_RS02520 6f3fc2d9ab65a32858e6df4f0784c4ab 372 SUPERFAMILY SSF48371 270 366 1.5E-5 T 23-04-2016 IPR016024 Armadillo-type fold GO:0005488 RPE_RS11800 35c4e12a1738fb2bb1a2684f84a2699f 421 SUPERFAMILY SSF52343 302 418 1.96E-23 T 23-04-2016 RPE_RS11800 35c4e12a1738fb2bb1a2684f84a2699f 421 SUPERFAMILY SSF63380 200 296 3.4E-10 T 23-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 RPE_RS11800 35c4e12a1738fb2bb1a2684f84a2699f 421 Pfam PF00175 Oxidoreductase NAD-binding domain 308 398 5.1E-5 T 23-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RPE_RS11800 35c4e12a1738fb2bb1a2684f84a2699f 421 Gene3D G3DSA:3.40.50.80 299 418 1.5E-20 T 23-04-2016 RPE_RS11800 35c4e12a1738fb2bb1a2684f84a2699f 421 Pfam PF08022 FAD-binding domain 208 281 5.1E-5 T 23-04-2016 IPR013112 FAD-binding 8 GO:0016491|GO:0055114 RPE_RS11800 35c4e12a1738fb2bb1a2684f84a2699f 421 Gene3D G3DSA:2.40.30.10 201 294 1.4E-6 T 23-04-2016 RPE_RS11800 35c4e12a1738fb2bb1a2684f84a2699f 421 PANTHER PTHR19370 200 418 7.4E-16 T 23-04-2016 RPE_RS11800 35c4e12a1738fb2bb1a2684f84a2699f 421 Pfam PF01794 Ferric reductase like transmembrane component 43 162 1.1E-13 T 23-04-2016 IPR013130 Ferric reductase transmembrane component-like domain RPE_RS24590 874317b90e7cc4dab59690751b9ac870 88 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 12 86 1.0E-27 T 23-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS24590 874317b90e7cc4dab59690751b9ac870 88 SUPERFAMILY SSF46992 3 86 6.02E-22 T 23-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS24590 874317b90e7cc4dab59690751b9ac870 88 Pfam PF01649 Ribosomal protein S20 2 83 3.2E-21 T 23-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS24590 874317b90e7cc4dab59690751b9ac870 88 PANTHER PTHR33398 1 87 2.4E-25 T 23-04-2016 RPE_RS24590 874317b90e7cc4dab59690751b9ac870 88 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 86 2.4E-18 T 23-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS24590 874317b90e7cc4dab59690751b9ac870 88 Gene3D G3DSA:1.20.58.110 1 86 5.1E-23 T 23-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS24590 874317b90e7cc4dab59690751b9ac870 88 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 14.64 T 23-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS01775 152f210687eab53fc682717ee6db4d84 211 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 9 206 4.2E-47 T 23-04-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 RPE_RS01775 152f210687eab53fc682717ee6db4d84 211 Pfam PF01725 Ham1 family 9 205 4.1E-46 T 23-04-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 RPE_RS01775 152f210687eab53fc682717ee6db4d84 211 SUPERFAMILY SSF52972 5 207 8.11E-61 T 23-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like RPE_RS01775 152f210687eab53fc682717ee6db4d84 211 Gene3D G3DSA:3.90.950.10 5 206 1.2E-71 T 23-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like RPE_RS01775 152f210687eab53fc682717ee6db4d84 211 Hamap MF_01405 dITP/XTP pyrophosphatase [rdgB]. 7 209 45.351 T 23-04-2016 IPR020922 Non-canonical purine NTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 RPE_RS01775 152f210687eab53fc682717ee6db4d84 211 PANTHER PTHR11067:SF9 2 205 1.2E-64 T 23-04-2016 RPE_RS01775 152f210687eab53fc682717ee6db4d84 211 PANTHER PTHR11067 2 205 1.2E-64 T 23-04-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 RPE_RS12015 cd8354c45622093f48c74f2a2ff4fb5e 1028 SMART SM00869 757 1018 2.7E-38 T 23-04-2016 IPR005546 Autotransporter beta-domain RPE_RS12015 cd8354c45622093f48c74f2a2ff4fb5e 1028 Gene3D G3DSA:2.40.128.130 741 1026 8.9E-40 T 23-04-2016 IPR005546 Autotransporter beta-domain RPE_RS12015 cd8354c45622093f48c74f2a2ff4fb5e 1028 PANTHER PTHR10795 292 411 4.2E-17 T 23-04-2016 IPR015500 Peptidase S8, subtilisin-related RPE_RS12015 cd8354c45622093f48c74f2a2ff4fb5e 1028 PANTHER PTHR10795 955 962 4.2E-17 T 23-04-2016 IPR015500 Peptidase S8, subtilisin-related RPE_RS12015 cd8354c45622093f48c74f2a2ff4fb5e 1028 PANTHER PTHR10795 31 236 4.2E-17 T 23-04-2016 IPR015500 Peptidase S8, subtilisin-related RPE_RS12015 cd8354c45622093f48c74f2a2ff4fb5e 1028 PANTHER PTHR10795:SF419 292 411 4.2E-17 T 23-04-2016 RPE_RS12015 cd8354c45622093f48c74f2a2ff4fb5e 1028 PANTHER PTHR10795:SF419 955 962 4.2E-17 T 23-04-2016 RPE_RS12015 cd8354c45622093f48c74f2a2ff4fb5e 1028 PANTHER PTHR10795:SF419 31 236 4.2E-17 T 23-04-2016 RPE_RS12015 cd8354c45622093f48c74f2a2ff4fb5e 1028 Gene3D G3DSA:3.40.50.200 55 404 1.2E-48 T 23-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RPE_RS12015 cd8354c45622093f48c74f2a2ff4fb5e 1028 SUPERFAMILY SSF103515 711 1028 3.4E-49 T 23-04-2016 IPR005546 Autotransporter beta-domain RPE_RS12015 cd8354c45622093f48c74f2a2ff4fb5e 1028 PRINTS PR00723 Subtilisin serine protease family (S8) signature 130 143 7.3E-9 T 23-04-2016 IPR015500 Peptidase S8, subtilisin-related RPE_RS12015 cd8354c45622093f48c74f2a2ff4fb5e 1028 PRINTS PR00723 Subtilisin serine protease family (S8) signature 344 360 7.3E-9 T 23-04-2016 IPR015500 Peptidase S8, subtilisin-related RPE_RS12015 cd8354c45622093f48c74f2a2ff4fb5e 1028 PRINTS PR00723 Subtilisin serine protease family (S8) signature 75 94 7.3E-9 T 23-04-2016 IPR015500 Peptidase S8, subtilisin-related RPE_RS12015 cd8354c45622093f48c74f2a2ff4fb5e 1028 SUPERFAMILY SSF52743 53 237 7.59E-48 T 23-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RPE_RS12015 cd8354c45622093f48c74f2a2ff4fb5e 1028 SUPERFAMILY SSF52743 270 407 7.59E-48 T 23-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RPE_RS12015 cd8354c45622093f48c74f2a2ff4fb5e 1028 Pfam PF00082 Subtilase family 75 396 8.0E-28 T 23-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RPE_RS12015 cd8354c45622093f48c74f2a2ff4fb5e 1028 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 134 144 - T 23-04-2016 IPR022398 Peptidase S8, subtilisin, His-active site RPE_RS12015 cd8354c45622093f48c74f2a2ff4fb5e 1028 Pfam PF03797 Autotransporter beta-domain 758 1016 5.2E-34 T 23-04-2016 IPR005546 Autotransporter beta-domain RPE_RS19305 ab04fb4a6215094a1f0c72255b64a725 665 SUPERFAMILY SSF51971 259 509 2.88E-58 T 23-04-2016 RPE_RS19305 ab04fb4a6215094a1f0c72255b64a725 665 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 261 563 1.3E-30 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS19305 ab04fb4a6215094a1f0c72255b64a725 665 PANTHER PTHR11938:SF99 164 655 2.0E-97 T 23-04-2016 RPE_RS19305 ab04fb4a6215094a1f0c72255b64a725 665 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 64 145 6.1E-21 T 23-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 RPE_RS19305 ab04fb4a6215094a1f0c72255b64a725 665 SMART SM00928 61 106 8.8E-10 T 23-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 RPE_RS19305 ab04fb4a6215094a1f0c72255b64a725 665 PANTHER PTHR11938 164 655 2.0E-97 T 23-04-2016 RPE_RS19305 ab04fb4a6215094a1f0c72255b64a725 665 SUPERFAMILY SSF140490 58 154 1.44E-24 T 23-04-2016 RPE_RS19305 ab04fb4a6215094a1f0c72255b64a725 665 Gene3D G3DSA:3.40.50.720 511 580 1.1E-25 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS19305 ab04fb4a6215094a1f0c72255b64a725 665 Gene3D G3DSA:3.40.50.720 263 350 1.1E-25 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS19305 ab04fb4a6215094a1f0c72255b64a725 665 SUPERFAMILY SSF46548 163 270 2.46E-18 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 RPE_RS19305 ab04fb4a6215094a1f0c72255b64a725 665 SUPERFAMILY SSF46548 604 649 8.89E-7 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 RPE_RS19305 ab04fb4a6215094a1f0c72255b64a725 665 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 162 239 2.0E-17 T 23-04-2016 IPR028261 Dihydroprymidine dehydrogenase domain II RPE_RS19305 ab04fb4a6215094a1f0c72255b64a725 665 Gene3D G3DSA:3.50.50.60 351 509 7.1E-44 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS19305 ab04fb4a6215094a1f0c72255b64a725 665 PRINTS PR00419 Adrenodoxin reductase family signature 399 413 9.4E-22 T 23-04-2016 RPE_RS19305 ab04fb4a6215094a1f0c72255b64a725 665 PRINTS PR00419 Adrenodoxin reductase family signature 284 297 9.4E-22 T 23-04-2016 RPE_RS19305 ab04fb4a6215094a1f0c72255b64a725 665 PRINTS PR00419 Adrenodoxin reductase family signature 261 283 9.4E-22 T 23-04-2016 RPE_RS19305 ab04fb4a6215094a1f0c72255b64a725 665 PRINTS PR00419 Adrenodoxin reductase family signature 326 336 9.4E-22 T 23-04-2016 RPE_RS19305 ab04fb4a6215094a1f0c72255b64a725 665 Gene3D G3DSA:1.10.1060.10 608 649 3.0E-7 T 23-04-2016 RPE_RS19305 ab04fb4a6215094a1f0c72255b64a725 665 Gene3D G3DSA:1.10.1060.10 151 262 3.7E-21 T 23-04-2016 RPE_RS24125 51fa4bbfd7e5a3f3f2647c6aa6a2f955 266 SMART SM00563 73 187 2.0E-26 T 23-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 RPE_RS24125 51fa4bbfd7e5a3f3f2647c6aa6a2f955 266 Gene3D G3DSA:3.40.1130.10 56 208 2.3E-11 T 23-04-2016 RPE_RS24125 51fa4bbfd7e5a3f3f2647c6aa6a2f955 266 PANTHER PTHR10434 1 260 5.4E-41 T 23-04-2016 RPE_RS24125 51fa4bbfd7e5a3f3f2647c6aa6a2f955 266 Pfam PF01553 Acyltransferase 59 184 2.5E-17 T 23-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 RPE_RS24125 51fa4bbfd7e5a3f3f2647c6aa6a2f955 266 SUPERFAMILY SSF69593 12 247 1.57E-39 T 23-04-2016 RPE_RS08680 51670006bd277f9b5e5875f11703d2fe 138 SMART SM00448 6 117 1.1E-25 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS08680 51670006bd277f9b5e5875f11703d2fe 138 PANTHER PTHR26402:SF497 6 121 5.0E-35 T 23-04-2016 RPE_RS08680 51670006bd277f9b5e5875f11703d2fe 138 Gene3D G3DSA:3.40.50.2300 8 126 1.1E-30 T 23-04-2016 RPE_RS08680 51670006bd277f9b5e5875f11703d2fe 138 Pfam PF00072 Response regulator receiver domain 8 115 7.7E-25 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS08680 51670006bd277f9b5e5875f11703d2fe 138 SUPERFAMILY SSF52172 8 122 9.39E-31 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS08680 51670006bd277f9b5e5875f11703d2fe 138 PANTHER PTHR26402 6 121 5.0E-35 T 23-04-2016 RPE_RS07200 522cc21ff53608f2c8b0f22416da78bf 317 Gene3D G3DSA:3.40.50.2020 163 290 2.6E-48 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RPE_RS07200 522cc21ff53608f2c8b0f22416da78bf 317 Pfam PF14572 Phosphoribosyl synthetase-associated domain 206 316 1.2E-24 T 23-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 RPE_RS07200 522cc21ff53608f2c8b0f22416da78bf 317 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 9 317 1.1E-115 T 23-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 RPE_RS07200 522cc21ff53608f2c8b0f22416da78bf 317 PANTHER PTHR10210 1 317 1.8E-181 T 23-04-2016 RPE_RS07200 522cc21ff53608f2c8b0f22416da78bf 317 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 9 124 4.1E-49 T 23-04-2016 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 RPE_RS07200 522cc21ff53608f2c8b0f22416da78bf 317 Hamap MF_00583_B Ribose-phosphate pyrophosphokinase [prs]. 8 317 48.134 T 23-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 RPE_RS07200 522cc21ff53608f2c8b0f22416da78bf 317 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 132 147 - T 23-04-2016 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: REACT_474|UniPathway: UPA00087 RPE_RS07200 522cc21ff53608f2c8b0f22416da78bf 317 SMART SM01400 8 124 4.2E-79 T 23-04-2016 RPE_RS07200 522cc21ff53608f2c8b0f22416da78bf 317 PANTHER PTHR10210:SF41 1 317 1.8E-181 T 23-04-2016 RPE_RS07200 522cc21ff53608f2c8b0f22416da78bf 317 Gene3D G3DSA:3.40.50.2020 6 162 2.8E-76 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RPE_RS07200 522cc21ff53608f2c8b0f22416da78bf 317 SUPERFAMILY SSF53271 73 306 1.39E-61 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RPE_RS08360 fae0719916df98c060b34de6f1dfd249 110 PANTHER PTHR30388 8 110 4.1E-42 T 23-04-2016 RPE_RS08360 fae0719916df98c060b34de6f1dfd249 110 Pfam PF02625 XdhC and CoxI family 18 85 1.1E-25 T 23-04-2016 IPR003777 XdhC- CoxI RPE_RS14570 2021f280e18777aa6bc540b9af8f9577 131 Pfam PF12200 Domain of unknown function (DUF3597) 3 126 2.7E-50 T 23-04-2016 IPR022016 Domain of unknown function DUF3597 RPE_RS14570 2021f280e18777aa6bc540b9af8f9577 131 SUPERFAMILY SSF158634 1 131 5.75E-50 T 23-04-2016 RPE_RS22535 dc716a230921dc7bb4cf2c602516cf1d 68 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 1 67 1.1E-20 T 23-04-2016 IPR004606 Molybdenum-pterin binding GO:0006810|GO:0030151 RPE_RS22535 dc716a230921dc7bb4cf2c602516cf1d 68 Gene3D G3DSA:2.40.50.100 1 68 5.1E-24 T 23-04-2016 RPE_RS22535 dc716a230921dc7bb4cf2c602516cf1d 68 SUPERFAMILY SSF50331 1 67 8.5E-20 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RPE_RS22535 dc716a230921dc7bb4cf2c602516cf1d 68 Pfam PF03459 TOBE domain 4 66 4.7E-16 T 23-04-2016 IPR005116 Transport-associated OB, type 1 RPE_RS03525 4a659f7ddfd4049cf7d9f944e4b71c7e 259 TIGRFAM TIGR02067 his_9_HisN: histidinol-phosphatase 7 258 1.5E-100 T 23-04-2016 IPR011809 Histidinol-phosphate phosphatase, putative, inositol monophosphatase GO:0004401 KEGG: 00340+3.1.3.15|UniPathway: UPA00031 RPE_RS03525 4a659f7ddfd4049cf7d9f944e4b71c7e 259 SUPERFAMILY SSF56655 6 258 2.36E-73 T 23-04-2016 RPE_RS03525 4a659f7ddfd4049cf7d9f944e4b71c7e 259 Gene3D G3DSA:3.30.540.10 6 154 3.2E-41 T 23-04-2016 RPE_RS03525 4a659f7ddfd4049cf7d9f944e4b71c7e 259 PANTHER PTHR20854 1 259 2.2E-95 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RPE_RS03525 4a659f7ddfd4049cf7d9f944e4b71c7e 259 Pfam PF00459 Inositol monophosphatase family 7 256 5.9E-54 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RPE_RS03525 4a659f7ddfd4049cf7d9f944e4b71c7e 259 PANTHER PTHR20854:SF38 1 259 2.2E-95 T 23-04-2016 RPE_RS03525 4a659f7ddfd4049cf7d9f944e4b71c7e 259 Gene3D G3DSA:3.40.190.80 155 258 6.2E-23 T 23-04-2016 RPE_RS03525 4a659f7ddfd4049cf7d9f944e4b71c7e 259 PRINTS PR00377 Inositol monophosphatase superfamily signature 62 78 7.3E-22 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RPE_RS03525 4a659f7ddfd4049cf7d9f944e4b71c7e 259 PRINTS PR00377 Inositol monophosphatase superfamily signature 208 232 7.3E-22 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RPE_RS03525 4a659f7ddfd4049cf7d9f944e4b71c7e 259 PRINTS PR00377 Inositol monophosphatase superfamily signature 82 98 7.3E-22 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RPE_RS03525 4a659f7ddfd4049cf7d9f944e4b71c7e 259 PRINTS PR00377 Inositol monophosphatase superfamily signature 177 198 7.3E-22 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RPE_RS03525 4a659f7ddfd4049cf7d9f944e4b71c7e 259 PRINTS PR00377 Inositol monophosphatase superfamily signature 40 60 7.3E-22 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RPE_RS08275 ff427129aa2581a2ffae4d5cf68d08ad 231 Pfam PF00834 Ribulose-phosphate 3 epimerase family 10 204 1.1E-77 T 23-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 RPE_RS08275 ff427129aa2581a2ffae4d5cf68d08ad 231 PANTHER PTHR11749 6 230 1.7E-113 T 23-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 RPE_RS08275 ff427129aa2581a2ffae4d5cf68d08ad 231 SUPERFAMILY SSF51366 6 220 2.83E-71 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 RPE_RS08275 ff427129aa2581a2ffae4d5cf68d08ad 231 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 10 209 3.4E-81 T 23-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 RPE_RS08275 ff427129aa2581a2ffae4d5cf68d08ad 231 PIRSF PIRSF001461 5 230 5.1E-84 T 23-04-2016 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 RPE_RS08275 ff427129aa2581a2ffae4d5cf68d08ad 231 Gene3D G3DSA:3.20.20.70 8 228 4.2E-87 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS08275 ff427129aa2581a2ffae4d5cf68d08ad 231 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 37 51 - T 23-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 RPE_RS08275 ff427129aa2581a2ffae4d5cf68d08ad 231 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 139 161 - T 23-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 RPE_RS04090 d89e791ddd0aeeab576974081a469e8c 428 Gene3D G3DSA:3.20.20.80 19 280 8.6E-13 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RPE_RS04090 d89e791ddd0aeeab576974081a469e8c 428 SUPERFAMILY SSF51445 33 276 1.05E-20 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RPE_RS23110 be3e22e853a7c73f63ffd847accd60be 691 Pfam PF00122 E1-E2 ATPase 78 302 3.6E-38 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 RPE_RS23110 be3e22e853a7c73f63ffd847accd60be 691 Gene3D G3DSA:2.70.150.10 41 214 8.1E-21 T 23-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 RPE_RS23110 be3e22e853a7c73f63ffd847accd60be 691 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 311 325 9.5E-24 T 23-04-2016 RPE_RS23110 be3e22e853a7c73f63ffd847accd60be 691 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 548 560 9.5E-24 T 23-04-2016 RPE_RS23110 be3e22e853a7c73f63ffd847accd60be 691 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 160 174 9.5E-24 T 23-04-2016 RPE_RS23110 be3e22e853a7c73f63ffd847accd60be 691 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 450 461 9.5E-24 T 23-04-2016 RPE_RS23110 be3e22e853a7c73f63ffd847accd60be 691 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 525 544 9.5E-24 T 23-04-2016 RPE_RS23110 be3e22e853a7c73f63ffd847accd60be 691 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 472 482 9.5E-24 T 23-04-2016 RPE_RS23110 be3e22e853a7c73f63ffd847accd60be 691 SUPERFAMILY SSF81653 125 213 2.62E-19 T 23-04-2016 RPE_RS23110 be3e22e853a7c73f63ffd847accd60be 691 PANTHER PTHR24093 634 685 0.0 T 23-04-2016 RPE_RS23110 be3e22e853a7c73f63ffd847accd60be 691 PANTHER PTHR24093 16 596 0.0 T 23-04-2016 RPE_RS23110 be3e22e853a7c73f63ffd847accd60be 691 ProSitePatterns PS01229 Hypothetical cof family signature 2. 525 547 - T 23-04-2016 RPE_RS23110 be3e22e853a7c73f63ffd847accd60be 691 Gene3D G3DSA:3.40.1110.10 322 452 2.4E-40 T 23-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 RPE_RS23110 be3e22e853a7c73f63ffd847accd60be 691 Gene3D G3DSA:3.40.50.1000 453 572 1.0E-37 T 23-04-2016 IPR023214 HAD-like domain RPE_RS23110 be3e22e853a7c73f63ffd847accd60be 691 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 313 319 - T 23-04-2016 IPR018303 P-type ATPase, phosphorylation site RPE_RS23110 be3e22e853a7c73f63ffd847accd60be 691 SUPERFAMILY SSF56784 299 323 2.4E-37 T 23-04-2016 IPR023214 HAD-like domain RPE_RS23110 be3e22e853a7c73f63ffd847accd60be 691 SUPERFAMILY SSF56784 448 568 2.4E-37 T 23-04-2016 IPR023214 HAD-like domain RPE_RS23110 be3e22e853a7c73f63ffd847accd60be 691 SUPERFAMILY SSF56784 358 414 2.4E-37 T 23-04-2016 IPR023214 HAD-like domain RPE_RS23110 be3e22e853a7c73f63ffd847accd60be 691 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 78 345 1.4E-27 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 RPE_RS23110 be3e22e853a7c73f63ffd847accd60be 691 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 377 612 2.8E-44 T 23-04-2016 IPR001757 P-type ATPase GO:0016021 RPE_RS23110 be3e22e853a7c73f63ffd847accd60be 691 TIGRFAM TIGR01497 kdpB: K+-transporting ATPase, B subunit 12 686 1.1E-300 T 23-04-2016 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 RPE_RS23110 be3e22e853a7c73f63ffd847accd60be 691 Pfam PF00702 haloacid dehalogenase-like hydrolase 307 539 6.1E-30 T 23-04-2016 RPE_RS23110 be3e22e853a7c73f63ffd847accd60be 691 SUPERFAMILY SSF81665 38 109 2.48E-10 T 23-04-2016 RPE_RS23110 be3e22e853a7c73f63ffd847accd60be 691 SUPERFAMILY SSF81665 214 305 2.48E-10 T 23-04-2016 RPE_RS23110 be3e22e853a7c73f63ffd847accd60be 691 PANTHER PTHR24093:SF49 634 685 0.0 T 23-04-2016 RPE_RS23110 be3e22e853a7c73f63ffd847accd60be 691 PANTHER PTHR24093:SF49 16 596 0.0 T 23-04-2016 RPE_RS23110 be3e22e853a7c73f63ffd847accd60be 691 Hamap MF_00285 Potassium-transporting ATPase ATP-binding subunit [kdpB]. 15 689 40.591 T 23-04-2016 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 RPE_RS09525 e22f998a5b1536a88742c20392f79ead 95 Pfam PF01541 GIY-YIG catalytic domain 5 77 8.4E-14 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily RPE_RS09525 e22f998a5b1536a88742c20392f79ead 95 PANTHER PTHR34477 5 91 7.8E-39 T 23-04-2016 RPE_RS09525 e22f998a5b1536a88742c20392f79ead 95 SUPERFAMILY SSF82771 4 91 1.31E-19 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily RPE_RS09525 e22f998a5b1536a88742c20392f79ead 95 SMART SM00465 4 82 0.0014 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily RPE_RS09525 e22f998a5b1536a88742c20392f79ead 95 PANTHER PTHR34477:SF2 5 91 7.8E-39 T 23-04-2016 RPE_RS14510 59693f1e8450f820d5917610f15e401e 166 Hamap MF_00984 Single-stranded DNA-binding protein. 5 118 35.776 T 23-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 RPE_RS14510 59693f1e8450f820d5917610f15e401e 166 PANTHER PTHR10302 1 166 2.0E-48 T 23-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 RPE_RS14510 59693f1e8450f820d5917610f15e401e 166 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 166 2.4E-46 T 23-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 RPE_RS14510 59693f1e8450f820d5917610f15e401e 166 SUPERFAMILY SSF50249 4 166 2.47E-53 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS14510 59693f1e8450f820d5917610f15e401e 166 Pfam PF00436 Single-strand binding protein family 5 108 6.7E-40 T 23-04-2016 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 RPE_RS14510 59693f1e8450f820d5917610f15e401e 166 Gene3D G3DSA:2.40.50.140 2 166 8.2E-51 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS01945 f784bda2b5a2e931457d7002a0bbfdb1 342 SUPERFAMILY SSF52540 17 210 3.77E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01945 f784bda2b5a2e931457d7002a0bbfdb1 342 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 20 334 1.3E-50 T 23-04-2016 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 RPE_RS01945 f784bda2b5a2e931457d7002a0bbfdb1 342 PANTHER PTHR34388 1 340 1.1E-54 T 23-04-2016 RPE_RS01945 f784bda2b5a2e931457d7002a0bbfdb1 342 Pfam PF06144 DNA polymerase III, delta subunit 24 190 7.5E-9 T 23-04-2016 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 RPE_RS01945 f784bda2b5a2e931457d7002a0bbfdb1 342 Gene3D G3DSA:3.40.50.300 19 139 1.2E-4 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01945 f784bda2b5a2e931457d7002a0bbfdb1 342 SUPERFAMILY SSF48019 216 337 4.08E-13 T 23-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 RPE_RS01945 f784bda2b5a2e931457d7002a0bbfdb1 342 Gene3D G3DSA:1.10.8.60 149 230 1.3E-10 T 23-04-2016 RPE_RS14190 98e6e8ec9ed9f9813007df9fa25a7c0d 349 SUPERFAMILY SSF53659 5 337 8.63E-97 T 23-04-2016 RPE_RS14190 98e6e8ec9ed9f9813007df9fa25a7c0d 349 PANTHER PTHR30100 3 345 9.7E-120 T 23-04-2016 RPE_RS14190 98e6e8ec9ed9f9813007df9fa25a7c0d 349 PANTHER PTHR30100:SF1 3 345 9.7E-120 T 23-04-2016 RPE_RS14190 98e6e8ec9ed9f9813007df9fa25a7c0d 349 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 343 141.723 T 23-04-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 UniPathway: UPA00085 RPE_RS14190 98e6e8ec9ed9f9813007df9fa25a7c0d 349 PIRSF PIRSF002465 3 342 3.1E-112 T 23-04-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 UniPathway: UPA00085 RPE_RS14190 98e6e8ec9ed9f9813007df9fa25a7c0d 349 Gene3D G3DSA:3.40.718.10 3 336 1.4E-116 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RPE_RS14190 98e6e8ec9ed9f9813007df9fa25a7c0d 349 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 5 337 1.3E-86 T 23-04-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 UniPathway: UPA00085 RPE_RS14190 98e6e8ec9ed9f9813007df9fa25a7c0d 349 Pfam PF02504 Fatty acid synthesis protein 5 327 2.5E-94 T 23-04-2016 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 UniPathway: UPA00085 RPE_RS21325 b956b67413addf379c525c3220627572 139 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 5 134 3.1E-23 T 23-04-2016 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 RPE_RS21325 b956b67413addf379c525c3220627572 139 Pfam PF02050 Flagellar FliJ protein 15 132 1.1E-11 T 23-04-2016 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 RPE_RS19460 c53cb0785c9217678db46e934d38a16d 241 SMART SM00382 26 209 3.0E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS19460 c53cb0785c9217678db46e934d38a16d 241 ProSitePatterns PS00211 ABC transporters family signature. 123 137 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS19460 c53cb0785c9217678db46e934d38a16d 241 Gene3D G3DSA:3.40.50.300 1 213 5.1E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS19460 c53cb0785c9217678db46e934d38a16d 241 SUPERFAMILY SSF52540 1 202 3.47E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS19460 c53cb0785c9217678db46e934d38a16d 241 PANTHER PTHR24220 3 196 4.1E-61 T 23-04-2016 RPE_RS19460 c53cb0785c9217678db46e934d38a16d 241 Pfam PF00005 ABC transporter 18 151 1.7E-23 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS16105 a92a945b538a18d9bd5f8a31c26dcd0b 156 SUPERFAMILY SSF54292 5 82 2.1E-24 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RPE_RS16105 a92a945b538a18d9bd5f8a31c26dcd0b 156 PANTHER PTHR11908 3 148 1.8E-43 T 23-04-2016 RPE_RS16105 a92a945b538a18d9bd5f8a31c26dcd0b 156 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 10 63 5.5E-7 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RPE_RS16105 a92a945b538a18d9bd5f8a31c26dcd0b 156 SUPERFAMILY SSF47741 88 153 5.23E-28 T 23-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RPE_RS16105 a92a945b538a18d9bd5f8a31c26dcd0b 156 Gene3D G3DSA:3.10.20.30 6 78 2.9E-29 T 23-04-2016 IPR012675 Beta-grasp domain RPE_RS16105 a92a945b538a18d9bd5f8a31c26dcd0b 156 PANTHER PTHR11908:SF66 3 148 1.8E-43 T 23-04-2016 RPE_RS16105 a92a945b538a18d9bd5f8a31c26dcd0b 156 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 43 51 - T 23-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RPE_RS16105 a92a945b538a18d9bd5f8a31c26dcd0b 156 Pfam PF01799 [2Fe-2S] binding domain 77 149 2.6E-26 T 23-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RPE_RS16105 a92a945b538a18d9bd5f8a31c26dcd0b 156 Gene3D G3DSA:1.10.150.120 79 153 9.0E-30 T 23-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RPE_RS20915 2fea007538e34b941058b4107c7a4dee 231 Gene3D G3DSA:1.20.1050.10 139 216 5.9E-7 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RPE_RS20915 2fea007538e34b941058b4107c7a4dee 231 Pfam PF13410 Glutathione S-transferase, C-terminal domain 147 211 6.0E-6 T 23-04-2016 RPE_RS20915 2fea007538e34b941058b4107c7a4dee 231 Pfam PF13417 Glutathione S-transferase, N-terminal domain 16 84 1.4E-12 T 23-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RPE_RS20915 2fea007538e34b941058b4107c7a4dee 231 PANTHER PTHR11260:SF270 12 217 2.9E-93 T 23-04-2016 RPE_RS20915 2fea007538e34b941058b4107c7a4dee 231 PANTHER PTHR11260 12 217 2.9E-93 T 23-04-2016 RPE_RS20915 2fea007538e34b941058b4107c7a4dee 231 SUPERFAMILY SSF47616 129 216 2.09E-11 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RPE_RS20915 2fea007538e34b941058b4107c7a4dee 231 SUPERFAMILY SSF52833 16 103 1.06E-15 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS20915 2fea007538e34b941058b4107c7a4dee 231 Gene3D G3DSA:3.40.30.10 16 84 8.8E-16 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS15775 62164b17aedcf5dd4de8e4bc29317e16 258 PANTHER PTHR33446 1 256 1.9E-23 T 23-04-2016 RPE_RS15775 62164b17aedcf5dd4de8e4bc29317e16 258 SUPERFAMILY SSF74653 155 257 6.8E-19 T 23-04-2016 RPE_RS15775 62164b17aedcf5dd4de8e4bc29317e16 258 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 180 257 4.6E-21 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 RPE_RS15775 62164b17aedcf5dd4de8e4bc29317e16 258 PANTHER PTHR33446:SF2 1 256 1.9E-23 T 23-04-2016 RPE_RS15775 62164b17aedcf5dd4de8e4bc29317e16 258 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 180 256 2.6E-15 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 RPE_RS15775 62164b17aedcf5dd4de8e4bc29317e16 258 Gene3D G3DSA:3.30.1150.10 143 257 6.5E-24 T 23-04-2016 RPE_RS17150 43fe84bb2024b72903abddeeb42a0528 473 PANTHER PTHR11911:SF23 130 441 6.9E-42 T 23-04-2016 RPE_RS17150 43fe84bb2024b72903abddeeb42a0528 473 Gene3D G3DSA:1.25.60.10 27 150 1.4E-27 T 23-04-2016 RPE_RS17150 43fe84bb2024b72903abddeeb42a0528 473 SUPERFAMILY SSF161093 298 469 2.09E-45 T 23-04-2016 RPE_RS17150 43fe84bb2024b72903abddeeb42a0528 473 SUPERFAMILY SSF158791 29 155 2.49E-27 T 23-04-2016 RPE_RS17150 43fe84bb2024b72903abddeeb42a0528 473 PANTHER PTHR11911 130 441 6.9E-42 T 23-04-2016 RPE_RS17150 43fe84bb2024b72903abddeeb42a0528 473 TIGRFAM TIGR00400 mgtE: magnesium transporter 47 468 1.7E-96 T 23-04-2016 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 RPE_RS17150 43fe84bb2024b72903abddeeb42a0528 473 SUPERFAMILY SSF54631 158 295 9.56E-27 T 23-04-2016 RPE_RS17150 43fe84bb2024b72903abddeeb42a0528 473 Pfam PF01769 Divalent cation transporter 343 464 1.8E-23 T 23-04-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 RPE_RS17150 43fe84bb2024b72903abddeeb42a0528 473 SMART SM00116 165 218 110.0 T 23-04-2016 IPR000644 CBS domain RPE_RS17150 43fe84bb2024b72903abddeeb42a0528 473 SMART SM00116 229 277 0.0037 T 23-04-2016 IPR000644 CBS domain RPE_RS17150 43fe84bb2024b72903abddeeb42a0528 473 SMART SM00924 55 158 1.3E-27 T 23-04-2016 IPR006668 Magnesium transporter, MgtE intracellular domain RPE_RS17150 43fe84bb2024b72903abddeeb42a0528 473 Pfam PF03448 MgtE intracellular N domain 55 156 9.6E-22 T 23-04-2016 IPR006668 Magnesium transporter, MgtE intracellular domain RPE_RS17150 43fe84bb2024b72903abddeeb42a0528 473 Pfam PF00571 CBS domain 240 277 1.8E-4 T 23-04-2016 IPR000644 CBS domain RPE_RS17150 43fe84bb2024b72903abddeeb42a0528 473 Gene3D G3DSA:1.10.357.20 299 470 8.8E-48 T 23-04-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 RPE_RS17150 43fe84bb2024b72903abddeeb42a0528 473 Gene3D G3DSA:3.10.580.10 151 283 3.1E-17 T 23-04-2016 RPE_RS04805 c5813da78f40ea6c6eb59a1d86c21a36 220 ProDom PD037531 MEMBRANE HYDROGENASE SUBUNIT COMPONENT HYDROGENASE-4 E OXIDOREDUCTASE PRECURSOR SIGNAL 1.-.-.- 16 199 2.0E-79 T 23-04-2016 RPE_RS04805 c5813da78f40ea6c6eb59a1d86c21a36 220 PANTHER PTHR38601:SF1 1 219 1.5E-55 T 23-04-2016 RPE_RS04805 c5813da78f40ea6c6eb59a1d86c21a36 220 PANTHER PTHR38601 1 219 1.5E-55 T 23-04-2016 RPE_RS02915 7d425b6c5ece704840c74288f1c4fb0b 483 PANTHER PTHR30458 72 270 1.0E-150 T 23-04-2016 RPE_RS02915 7d425b6c5ece704840c74288f1c4fb0b 483 PANTHER PTHR30458 293 325 1.0E-150 T 23-04-2016 RPE_RS02915 7d425b6c5ece704840c74288f1c4fb0b 483 PANTHER PTHR30458 363 483 1.0E-150 T 23-04-2016 RPE_RS02915 7d425b6c5ece704840c74288f1c4fb0b 483 TIGRFAM TIGR03225 benzo_boxB: benzoyl-CoA oxygenase, B subunit 8 481 1.3E-275 T 23-04-2016 IPR017635 Benzoyl-CoA oxygenase, B subunit KEGG: 00361+1.14.13.20|MetaCyc: PWY-6085|MetaCyc: PWY-6086 RPE_RS02915 7d425b6c5ece704840c74288f1c4fb0b 483 SUPERFAMILY SSF47240 111 350 1.4E-47 T 23-04-2016 IPR009078 Ferritin-like superfamily RPE_RS02915 7d425b6c5ece704840c74288f1c4fb0b 483 Gene3D G3DSA:1.20.1260.10 106 268 6.7E-9 T 23-04-2016 IPR012347 Ferritin-related RPE_RS02915 7d425b6c5ece704840c74288f1c4fb0b 483 PANTHER PTHR30458:SF0 72 270 1.0E-150 T 23-04-2016 RPE_RS02915 7d425b6c5ece704840c74288f1c4fb0b 483 PANTHER PTHR30458:SF0 293 325 1.0E-150 T 23-04-2016 RPE_RS02915 7d425b6c5ece704840c74288f1c4fb0b 483 PANTHER PTHR30458:SF0 363 483 1.0E-150 T 23-04-2016 RPE_RS19885 4931323b13282728f3ab59cd3297de2b 178 PRINTS PR00162 Rieske 2Fe-2S subunit signature 148 160 2.6E-14 T 23-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RPE_RS19885 4931323b13282728f3ab59cd3297de2b 178 PRINTS PR00162 Rieske 2Fe-2S subunit signature 136 148 2.6E-14 T 23-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RPE_RS19885 4931323b13282728f3ab59cd3297de2b 178 PRINTS PR00162 Rieske 2Fe-2S subunit signature 114 125 2.6E-14 T 23-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RPE_RS19885 4931323b13282728f3ab59cd3297de2b 178 Gene3D G3DSA:1.20.5.510 8 42 1.1E-17 T 23-04-2016 RPE_RS19885 4931323b13282728f3ab59cd3297de2b 178 Pfam PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal 4 41 8.0E-18 T 23-04-2016 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 RPE_RS19885 4931323b13282728f3ab59cd3297de2b 178 Pfam PF00355 Rieske [2Fe-2S] domain 108 161 9.2E-11 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RPE_RS19885 4931323b13282728f3ab59cd3297de2b 178 PANTHER PTHR10134 10 178 2.4E-65 T 23-04-2016 IPR014349 Rieske iron-sulphur protein GO:0016679|GO:0055114 RPE_RS19885 4931323b13282728f3ab59cd3297de2b 178 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 11 176 1.3E-62 T 23-04-2016 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 RPE_RS19885 4931323b13282728f3ab59cd3297de2b 178 SUPERFAMILY SSF50022 33 174 3.22E-39 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RPE_RS19885 4931323b13282728f3ab59cd3297de2b 178 Gene3D G3DSA:2.102.10.10 51 173 2.4E-35 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RPE_RS08835 38d3d4bb8058c231b95a5e060092385b 720 Gene3D G3DSA:1.20.1220.12 588 718 1.3E-72 T 23-04-2016 RPE_RS08835 38d3d4bb8058c231b95a5e060092385b 720 Gene3D G3DSA:2.170.170.11 296 333 6.5E-66 T 23-04-2016 IPR023310 Malate synthase G, beta sub-domain GO:0004474 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 RPE_RS08835 38d3d4bb8058c231b95a5e060092385b 720 Gene3D G3DSA:2.170.170.11 135 262 6.5E-66 T 23-04-2016 IPR023310 Malate synthase G, beta sub-domain GO:0004474 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 RPE_RS08835 38d3d4bb8058c231b95a5e060092385b 720 Pfam PF01274 Malate synthase 17 688 2.2E-176 T 23-04-2016 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 RPE_RS08835 38d3d4bb8058c231b95a5e060092385b 720 PANTHER PTHR21631:SF7 32 40 1.5E-143 T 23-04-2016 RPE_RS08835 38d3d4bb8058c231b95a5e060092385b 720 PANTHER PTHR21631:SF7 499 718 1.5E-143 T 23-04-2016 RPE_RS08835 38d3d4bb8058c231b95a5e060092385b 720 PANTHER PTHR21631 32 40 1.5E-143 T 23-04-2016 RPE_RS08835 38d3d4bb8058c231b95a5e060092385b 720 PANTHER PTHR21631 499 718 1.5E-143 T 23-04-2016 RPE_RS08835 38d3d4bb8058c231b95a5e060092385b 720 TIGRFAM TIGR01345 malate_syn_G: malate synthase G 3 718 0.0 T 23-04-2016 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 RPE_RS08835 38d3d4bb8058c231b95a5e060092385b 720 SUPERFAMILY SSF51645 2 718 4.71E-288 T 23-04-2016 IPR011076 Malate synthase-like GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 RPE_RS08835 38d3d4bb8058c231b95a5e060092385b 720 Hamap MF_00641 Malate synthase G [glcB]. 1 720 393.842 T 23-04-2016 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 RPE_RS08835 38d3d4bb8058c231b95a5e060092385b 720 Gene3D G3DSA:1.10.1860.10 2 87 5.0E-33 T 23-04-2016 RPE_RS08835 38d3d4bb8058c231b95a5e060092385b 720 Gene3D G3DSA:3.20.20.360 334 583 9.7E-141 T 23-04-2016 RPE_RS08835 38d3d4bb8058c231b95a5e060092385b 720 Gene3D G3DSA:3.20.20.360 88 134 9.7E-141 T 23-04-2016 RPE_RS08835 38d3d4bb8058c231b95a5e060092385b 720 Gene3D G3DSA:3.20.20.360 264 294 9.7E-141 T 23-04-2016 RPE_RS23355 72bc8115cdfd5ef2555ced7538746ba5 690 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 444 621 2.6E-34 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS23355 72bc8115cdfd5ef2555ced7538746ba5 690 Gene3D G3DSA:1.10.287.950 398 594 1.6E-39 T 23-04-2016 RPE_RS23355 72bc8115cdfd5ef2555ced7538746ba5 690 SUPERFAMILY SSF58104 356 623 1.44E-60 T 23-04-2016 RPE_RS23355 72bc8115cdfd5ef2555ced7538746ba5 690 PANTHER PTHR32089 307 625 8.1E-100 T 23-04-2016 RPE_RS23355 72bc8115cdfd5ef2555ced7538746ba5 690 Pfam PF00672 HAMP domain 317 384 1.4E-11 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS23355 72bc8115cdfd5ef2555ced7538746ba5 690 SMART SM00304 336 388 6.8E-9 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS23355 72bc8115cdfd5ef2555ced7538746ba5 690 PANTHER PTHR32089:SF1 307 625 8.1E-100 T 23-04-2016 RPE_RS23355 72bc8115cdfd5ef2555ced7538746ba5 690 SMART SM00283 389 622 1.1E-62 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS19315 927dea45f38c65951ed1592e27bd0c62 713 PANTHER PTHR23406 166 705 5.2E-50 T 23-04-2016 RPE_RS19315 927dea45f38c65951ed1592e27bd0c62 713 Pfam PF01515 Phosphate acetyl/butaryl transferase 379 694 1.3E-118 T 23-04-2016 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 RPE_RS19315 927dea45f38c65951ed1592e27bd0c62 713 Gene3D G3DSA:3.40.50.10750 511 670 4.2E-63 T 23-04-2016 RPE_RS19315 927dea45f38c65951ed1592e27bd0c62 713 SUPERFAMILY SSF53659 379 697 1.69E-93 T 23-04-2016 RPE_RS19315 927dea45f38c65951ed1592e27bd0c62 713 Gene3D G3DSA:3.40.1390.20 216 353 3.9E-25 T 23-04-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like RPE_RS19315 927dea45f38c65951ed1592e27bd0c62 713 Gene3D G3DSA:3.40.50.300 17 215 9.8E-11 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS19315 927dea45f38c65951ed1592e27bd0c62 713 SUPERFAMILY SSF75138 218 336 9.02E-20 T 23-04-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like RPE_RS19315 927dea45f38c65951ed1592e27bd0c62 713 SUPERFAMILY SSF52540 9 225 6.51E-20 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS19315 927dea45f38c65951ed1592e27bd0c62 713 Pfam PF13500 AAA domain 8 219 2.4E-33 T 23-04-2016 RPE_RS19315 927dea45f38c65951ed1592e27bd0c62 713 PIRSF PIRSF006107 6 702 4.8E-286 T 23-04-2016 IPR016475 Phosphate acetyltransferase, bacteria GO:0008959 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 RPE_RS19315 927dea45f38c65951ed1592e27bd0c62 713 Pfam PF07085 DRTGG domain 222 333 3.6E-24 T 23-04-2016 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 RPE_RS19315 927dea45f38c65951ed1592e27bd0c62 713 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 394 694 4.6E-122 T 23-04-2016 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 RPE_RS19315 927dea45f38c65951ed1592e27bd0c62 713 PANTHER PTHR23406:SF3 166 705 5.2E-50 T 23-04-2016 RPE_RS14065 b1c90978391392a20f42fa35f8a8a333 324 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 140 161 - T 23-04-2016 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 RPE_RS14065 b1c90978391392a20f42fa35f8a8a333 324 Pfam PF00107 Zinc-binding dehydrogenase 151 255 6.2E-26 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RPE_RS14065 b1c90978391392a20f42fa35f8a8a333 324 Gene3D G3DSA:3.40.50.720 146 255 2.7E-30 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS14065 b1c90978391392a20f42fa35f8a8a333 324 SUPERFAMILY SSF50129 2 144 2.59E-41 T 23-04-2016 IPR011032 GroES-like RPE_RS14065 b1c90978391392a20f42fa35f8a8a333 324 PANTHER PTHR11695:SF578 16 324 3.9E-130 T 23-04-2016 RPE_RS14065 b1c90978391392a20f42fa35f8a8a333 324 Gene3D G3DSA:3.90.180.10 2 145 6.5E-51 T 23-04-2016 IPR011032 GroES-like RPE_RS14065 b1c90978391392a20f42fa35f8a8a333 324 SUPERFAMILY SSF51735 112 265 1.97E-46 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS14065 b1c90978391392a20f42fa35f8a8a333 324 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 90 1.7E-10 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RPE_RS14065 b1c90978391392a20f42fa35f8a8a333 324 PANTHER PTHR11695 16 324 3.9E-130 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RPE_RS14065 b1c90978391392a20f42fa35f8a8a333 324 SMART SM00829 11 322 5.7E-27 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RPE_RS05965 572a41a1add1f6caf02e6db500f20ba3 135 PANTHER PTHR30435 15 127 2.1E-15 T 23-04-2016 RPE_RS05965 572a41a1add1f6caf02e6db500f20ba3 135 Pfam PF03963 Flagellar hook capping protein - N-terminal region 9 73 2.2E-22 T 23-04-2016 IPR005648 Flagellar hook capping protein RPE_RS15245 5f4f967153dfd13127cead2bb6fa350d 135 PANTHER PTHR33570 1 134 5.2E-48 T 23-04-2016 RPE_RS15245 5f4f967153dfd13127cead2bb6fa350d 135 Gene3D G3DSA:2.60.120.10 9 129 6.2E-33 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS15245 5f4f967153dfd13127cead2bb6fa350d 135 Pfam PF07883 Cupin domain 41 101 1.1E-11 T 23-04-2016 IPR013096 Cupin 2, conserved barrel RPE_RS15245 5f4f967153dfd13127cead2bb6fa350d 135 SUPERFAMILY SSF51182 10 131 2.36E-30 T 23-04-2016 IPR011051 RmlC-like cupin domain RPE_RS15245 5f4f967153dfd13127cead2bb6fa350d 135 PANTHER PTHR33570:SF5 1 134 5.2E-48 T 23-04-2016 RPE_RS08625 ba599bd55cd9fc091a03b9967bc52466 428 SUPERFAMILY SSF142984 244 326 8.89E-23 T 23-04-2016 RPE_RS08625 ba599bd55cd9fc091a03b9967bc52466 428 SUPERFAMILY SSF140490 329 425 1.31E-26 T 23-04-2016 RPE_RS08625 ba599bd55cd9fc091a03b9967bc52466 428 Pfam PF10531 SLBB domain 247 289 2.6E-9 T 23-04-2016 IPR019554 Soluble ligand binding domain RPE_RS08625 ba599bd55cd9fc091a03b9967bc52466 428 SUPERFAMILY SSF142019 15 243 1.18E-76 T 23-04-2016 RPE_RS08625 ba599bd55cd9fc091a03b9967bc52466 428 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 334 418 1.0E-21 T 23-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 RPE_RS08625 ba599bd55cd9fc091a03b9967bc52466 428 PANTHER PTHR11780:SF10 5 419 6.3E-173 T 23-04-2016 RPE_RS08625 ba599bd55cd9fc091a03b9967bc52466 428 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 344 355 - T 23-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 RPE_RS08625 ba599bd55cd9fc091a03b9967bc52466 428 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 47 222 1.0E-45 T 23-04-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain RPE_RS08625 ba599bd55cd9fc091a03b9967bc52466 428 SMART SM00928 331 376 1.2E-20 T 23-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 RPE_RS08625 ba599bd55cd9fc091a03b9967bc52466 428 PANTHER PTHR11780 5 419 6.3E-173 T 23-04-2016 RPE_RS16315 88a6ce43b9a48836b9938f09d45dded7 65 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 49 3.3E-11 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RPE_RS16315 88a6ce43b9a48836b9938f09d45dded7 65 Gene3D G3DSA:3.40.1620.10 1 47 4.7E-12 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RPE_RS16315 88a6ce43b9a48836b9938f09d45dded7 65 SUPERFAMILY SSF143120 1 48 1.44E-10 T 23-04-2016 RPE_RS16315 88a6ce43b9a48836b9938f09d45dded7 65 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 4 49 2.8E-10 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RPE_RS06180 ffbd86e252a7020bfe9e02137d583d2b 597 Pfam PF01425 Amidase 24 433 1.3E-82 T 23-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RPE_RS06180 ffbd86e252a7020bfe9e02137d583d2b 597 Gene3D G3DSA:3.90.1300.10 6 447 2.3E-107 T 23-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RPE_RS06180 ffbd86e252a7020bfe9e02137d583d2b 597 PANTHER PTHR11895 6 453 1.5E-159 T 23-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RPE_RS06180 ffbd86e252a7020bfe9e02137d583d2b 597 SUPERFAMILY SSF75304 6 447 2.62E-109 T 23-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RPE_RS06180 ffbd86e252a7020bfe9e02137d583d2b 597 TIGRFAM TIGR02713 allophanate_hyd: allophanate hydrolase 40 593 7.5E-234 T 23-04-2016 IPR014085 Allophanate hydrolase KEGG: 00220+3.5.1.54|KEGG: 00791+3.5.1.54|MetaCyc: PWY-5169|MetaCyc: PWY-5703 RPE_RS06180 ffbd86e252a7020bfe9e02137d583d2b 597 PANTHER PTHR11895:SF24 6 453 1.5E-159 T 23-04-2016 RPE_RS23995 753063c3f7c57b99d47e3b7430ca7e3a 380 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 253 272 1.0E-18 T 23-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 RPE_RS23995 753063c3f7c57b99d47e3b7430ca7e3a 380 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 48 66 1.0E-18 T 23-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 RPE_RS23995 753063c3f7c57b99d47e3b7430ca7e3a 380 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 170 183 1.0E-18 T 23-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 RPE_RS23995 753063c3f7c57b99d47e3b7430ca7e3a 380 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 68 80 1.0E-18 T 23-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 RPE_RS23995 753063c3f7c57b99d47e3b7430ca7e3a 380 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 48 66 - T 23-04-2016 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Reactome: REACT_13 RPE_RS23995 753063c3f7c57b99d47e3b7430ca7e3a 380 SUPERFAMILY SSF50621 231 378 4.4E-35 T 23-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 RPE_RS23995 753063c3f7c57b99d47e3b7430ca7e3a 380 PANTHER PTHR11482 1 380 4.9E-130 T 23-04-2016 RPE_RS23995 753063c3f7c57b99d47e3b7430ca7e3a 380 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 30 263 3.7E-55 T 23-04-2016 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Reactome: REACT_13 RPE_RS23995 753063c3f7c57b99d47e3b7430ca7e3a 380 PANTHER PTHR11482:SF6 1 380 4.9E-130 T 23-04-2016 RPE_RS23995 753063c3f7c57b99d47e3b7430ca7e3a 380 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 271 376 1.3E-15 T 23-04-2016 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Reactome: REACT_13 RPE_RS23995 753063c3f7c57b99d47e3b7430ca7e3a 380 SUPERFAMILY SSF51419 26 265 1.02E-66 T 23-04-2016 IPR029066 PLP-binding barrel RPE_RS23995 753063c3f7c57b99d47e3b7430ca7e3a 380 Gene3D G3DSA:3.20.20.10 29 248 4.4E-68 T 23-04-2016 IPR029066 PLP-binding barrel RPE_RS23995 753063c3f7c57b99d47e3b7430ca7e3a 380 Gene3D G3DSA:2.40.37.10 249 378 2.1E-27 T 23-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 RPE_RS23995 753063c3f7c57b99d47e3b7430ca7e3a 380 PRINTS PR01182 Ornithine decarboxylase signature 322 332 1.3E-20 T 23-04-2016 IPR002433 Ornithine decarboxylase GO:0006596 Reactome: REACT_13 RPE_RS23995 753063c3f7c57b99d47e3b7430ca7e3a 380 PRINTS PR01182 Ornithine decarboxylase signature 20 44 1.3E-20 T 23-04-2016 IPR002433 Ornithine decarboxylase GO:0006596 Reactome: REACT_13 RPE_RS23995 753063c3f7c57b99d47e3b7430ca7e3a 380 PRINTS PR01182 Ornithine decarboxylase signature 90 114 1.3E-20 T 23-04-2016 IPR002433 Ornithine decarboxylase GO:0006596 Reactome: REACT_13 RPE_RS23995 753063c3f7c57b99d47e3b7430ca7e3a 380 PRINTS PR01182 Ornithine decarboxylase signature 46 73 1.3E-20 T 23-04-2016 IPR002433 Ornithine decarboxylase GO:0006596 Reactome: REACT_13 RPE_RS23995 753063c3f7c57b99d47e3b7430ca7e3a 380 PRINTS PR01182 Ornithine decarboxylase signature 120 142 1.3E-20 T 23-04-2016 IPR002433 Ornithine decarboxylase GO:0006596 Reactome: REACT_13 RPE_RS02055 ab74cb0425270a1287dbd2ad5a1896b7 306 PRINTS PR00421 Thioredoxin family signature 39 47 5.4E-5 T 23-04-2016 RPE_RS02055 ab74cb0425270a1287dbd2ad5a1896b7 306 PRINTS PR00421 Thioredoxin family signature 47 56 5.4E-5 T 23-04-2016 RPE_RS02055 ab74cb0425270a1287dbd2ad5a1896b7 306 PRINTS PR00421 Thioredoxin family signature 87 98 5.4E-5 T 23-04-2016 RPE_RS02055 ab74cb0425270a1287dbd2ad5a1896b7 306 Gene3D G3DSA:3.40.30.10 11 122 2.9E-30 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS02055 ab74cb0425270a1287dbd2ad5a1896b7 306 Pfam PF00085 Thioredoxin 19 121 9.0E-24 T 23-04-2016 IPR013766 Thioredoxin domain GO:0045454 RPE_RS02055 ab74cb0425270a1287dbd2ad5a1896b7 306 PANTHER PTHR10438:SF282 16 125 5.8E-38 T 23-04-2016 RPE_RS02055 ab74cb0425270a1287dbd2ad5a1896b7 306 Gene3D G3DSA:1.25.40.10 135 217 5.0E-18 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS02055 ab74cb0425270a1287dbd2ad5a1896b7 306 Gene3D G3DSA:1.25.40.10 220 305 5.1E-32 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS02055 ab74cb0425270a1287dbd2ad5a1896b7 306 SUPERFAMILY SSF48452 134 267 5.21E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS02055 ab74cb0425270a1287dbd2ad5a1896b7 306 PANTHER PTHR10438:SF282 247 268 5.8E-38 T 23-04-2016 RPE_RS02055 ab74cb0425270a1287dbd2ad5a1896b7 306 SUPERFAMILY SSF52833 16 124 1.31E-30 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS02055 ab74cb0425270a1287dbd2ad5a1896b7 306 ProSitePatterns PS00194 Thioredoxin family active site. 40 58 - T 23-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 RPE_RS02055 ab74cb0425270a1287dbd2ad5a1896b7 306 PANTHER PTHR10438 247 268 5.8E-38 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RPE_RS02055 ab74cb0425270a1287dbd2ad5a1896b7 306 PANTHER PTHR10438 16 125 5.8E-38 T 23-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RPE_RS02055 ab74cb0425270a1287dbd2ad5a1896b7 306 Pfam PF14559 Tetratricopeptide repeat 145 211 1.4E-14 T 23-04-2016 RPE_RS02055 ab74cb0425270a1287dbd2ad5a1896b7 306 Pfam PF14561 Tetratricopeptide repeat 216 305 3.5E-31 T 23-04-2016 RPE_RS05945 06016424f0e4aecd84e6f3c3c322fd85 490 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 448 486 1.7E-7 T 23-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RPE_RS05945 06016424f0e4aecd84e6f3c3c322fd85 490 SUPERFAMILY SSF64518 104 486 3.79E-9 T 23-04-2016 RPE_RS05945 06016424f0e4aecd84e6f3c3c322fd85 490 PANTHER PTHR30033 1 490 6.2E-79 T 23-04-2016 RPE_RS05945 06016424f0e4aecd84e6f3c3c322fd85 490 PANTHER PTHR30033:SF1 1 490 6.2E-79 T 23-04-2016 RPE_RS05945 06016424f0e4aecd84e6f3c3c322fd85 490 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 6 488 2.7E-91 T 23-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RPE_RS05490 055c5f309b7555ac80f27b33ca4977de 467 PANTHER PTHR30386 4 126 3.4E-77 T 23-04-2016 RPE_RS05490 055c5f309b7555ac80f27b33ca4977de 467 PANTHER PTHR30386 157 467 3.4E-77 T 23-04-2016 RPE_RS05490 055c5f309b7555ac80f27b33ca4977de 467 Pfam PF13437 HlyD family secretion protein 297 399 1.1E-16 T 23-04-2016 RPE_RS05490 055c5f309b7555ac80f27b33ca4977de 467 PANTHER PTHR30386:SF8 4 126 3.4E-77 T 23-04-2016 RPE_RS05490 055c5f309b7555ac80f27b33ca4977de 467 PANTHER PTHR30386:SF8 157 467 3.4E-77 T 23-04-2016 RPE_RS05490 055c5f309b7555ac80f27b33ca4977de 467 Gene3D G3DSA:2.40.50.100 295 330 1.4E-14 T 23-04-2016 RPE_RS05490 055c5f309b7555ac80f27b33ca4977de 467 Gene3D G3DSA:2.40.50.100 75 105 1.4E-14 T 23-04-2016 RPE_RS05490 055c5f309b7555ac80f27b33ca4977de 467 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 83 103 1.1E-28 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RPE_RS05490 055c5f309b7555ac80f27b33ca4977de 467 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 343 367 1.1E-28 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RPE_RS05490 055c5f309b7555ac80f27b33ca4977de 467 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 41 64 1.1E-28 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RPE_RS05490 055c5f309b7555ac80f27b33ca4977de 467 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 310 331 1.1E-28 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RPE_RS05490 055c5f309b7555ac80f27b33ca4977de 467 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 32 467 5.1E-97 T 23-04-2016 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 RPE_RS05490 055c5f309b7555ac80f27b33ca4977de 467 Pfam PF13533 Biotin-lipoyl like 81 119 7.0E-7 T 23-04-2016 RPE_RS15690 d066d7048413940a7b04b939144b19ec 260 SMART SM00382 31 219 2.5E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS15690 d066d7048413940a7b04b939144b19ec 260 SUPERFAMILY SSF52540 7 235 8.77E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15690 d066d7048413940a7b04b939144b19ec 260 Gene3D G3DSA:3.40.50.300 6 235 2.4E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15690 d066d7048413940a7b04b939144b19ec 260 Pfam PF00005 ABC transporter 23 171 2.7E-29 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS15690 d066d7048413940a7b04b939144b19ec 260 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS15690 d066d7048413940a7b04b939144b19ec 260 PANTHER PTHR24220 8 241 6.1E-78 T 23-04-2016 RPE_RS17835 c66ea8705084f45e49151c6d972ed194 264 Gene3D G3DSA:3.40.50.720 2 259 1.0E-67 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS17835 c66ea8705084f45e49151c6d972ed194 264 SUPERFAMILY SSF51735 1 260 5.9E-64 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS17835 c66ea8705084f45e49151c6d972ed194 264 PANTHER PTHR24322:SF25 12 138 9.9E-77 T 23-04-2016 RPE_RS17835 c66ea8705084f45e49151c6d972ed194 264 PANTHER PTHR24322:SF25 154 186 9.9E-77 T 23-04-2016 RPE_RS17835 c66ea8705084f45e49151c6d972ed194 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.1E-25 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS17835 c66ea8705084f45e49151c6d972ed194 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 223 243 1.1E-25 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS17835 c66ea8705084f45e49151c6d972ed194 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 1.1E-25 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS17835 c66ea8705084f45e49151c6d972ed194 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 1.1E-25 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS17835 c66ea8705084f45e49151c6d972ed194 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 1.1E-25 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS17835 c66ea8705084f45e49151c6d972ed194 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 1.1E-25 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS17835 c66ea8705084f45e49151c6d972ed194 264 Pfam PF00106 short chain dehydrogenase 8 195 9.2E-43 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS17835 c66ea8705084f45e49151c6d972ed194 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 1.0E-5 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS17835 c66ea8705084f45e49151c6d972ed194 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 1.0E-5 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS17835 c66ea8705084f45e49151c6d972ed194 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 1.0E-5 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS17835 c66ea8705084f45e49151c6d972ed194 264 PANTHER PTHR24322 12 138 9.9E-77 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS17835 c66ea8705084f45e49151c6d972ed194 264 PANTHER PTHR24322 154 186 9.9E-77 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS19945 4f7d9b08bd8b9ca88baf9c63749f0f91 238 SMART SM00862 153 227 2.7E-23 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS19945 4f7d9b08bd8b9ca88baf9c63749f0f91 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 227 3.2E-20 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS19945 4f7d9b08bd8b9ca88baf9c63749f0f91 238 SUPERFAMILY SSF52172 4 131 8.11E-41 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS19945 4f7d9b08bd8b9ca88baf9c63749f0f91 238 PANTHER PTHR26402 6 231 1.5E-83 T 23-04-2016 RPE_RS19945 4f7d9b08bd8b9ca88baf9c63749f0f91 238 Pfam PF00072 Response regulator receiver domain 8 118 2.3E-28 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS19945 4f7d9b08bd8b9ca88baf9c63749f0f91 238 SMART SM00448 6 117 3.9E-40 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS19945 4f7d9b08bd8b9ca88baf9c63749f0f91 238 PANTHER PTHR26402:SF528 6 231 1.5E-83 T 23-04-2016 RPE_RS19945 4f7d9b08bd8b9ca88baf9c63749f0f91 238 SUPERFAMILY SSF46894 131 229 6.8E-23 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RPE_RS19945 4f7d9b08bd8b9ca88baf9c63749f0f91 238 Gene3D G3DSA:1.10.10.10 131 230 1.5E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS19945 4f7d9b08bd8b9ca88baf9c63749f0f91 238 Gene3D G3DSA:3.40.50.2300 5 126 1.2E-40 T 23-04-2016 RPE_RS07235 b4c8e313f3d7608a70d2d20b09412e5b 201 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 1 177 33.856 T 23-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RPE_RS07235 b4c8e313f3d7608a70d2d20b09412e5b 201 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 1 170 6.1E-52 T 23-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RPE_RS07235 b4c8e313f3d7608a70d2d20b09412e5b 201 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 107 117 - T 23-04-2016 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 RPE_RS07235 b4c8e313f3d7608a70d2d20b09412e5b 201 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 14 27 - T 23-04-2016 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 RPE_RS07235 b4c8e313f3d7608a70d2d20b09412e5b 201 PANTHER PTHR17224 3 194 2.8E-67 T 23-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RPE_RS07235 b4c8e313f3d7608a70d2d20b09412e5b 201 PANTHER PTHR17224:SF1 3 194 2.8E-67 T 23-04-2016 RPE_RS07235 b4c8e313f3d7608a70d2d20b09412e5b 201 Gene3D G3DSA:3.40.50.1470 1 184 6.1E-64 T 23-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RPE_RS07235 b4c8e313f3d7608a70d2d20b09412e5b 201 SUPERFAMILY SSF53178 1 184 7.32E-64 T 23-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RPE_RS07235 b4c8e313f3d7608a70d2d20b09412e5b 201 Pfam PF01195 Peptidyl-tRNA hydrolase 3 176 4.1E-49 T 23-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RPE_RS22175 edcdf3edf42de5fd95ceadcd33a73f05 185 PANTHER PTHR34478:SF1 1 185 6.8E-91 T 23-04-2016 RPE_RS22175 edcdf3edf42de5fd95ceadcd33a73f05 185 Pfam PF04011 LemA family 5 185 6.1E-68 T 23-04-2016 IPR007156 LemA RPE_RS22175 edcdf3edf42de5fd95ceadcd33a73f05 185 SUPERFAMILY SSF140478 24 171 3.27E-55 T 23-04-2016 IPR023353 LemA-like domain RPE_RS22175 edcdf3edf42de5fd95ceadcd33a73f05 185 PANTHER PTHR34478 1 185 6.8E-91 T 23-04-2016 RPE_RS22175 edcdf3edf42de5fd95ceadcd33a73f05 185 Gene3D G3DSA:1.20.1440.20 13 185 2.5E-66 T 23-04-2016 IPR023353 LemA-like domain RPE_RS21705 1f2bbe5c5654a7394cc29cd768d1fb4b 230 PANTHER PTHR10108:SF831 24 216 3.5E-89 T 23-04-2016 RPE_RS21705 1f2bbe5c5654a7394cc29cd768d1fb4b 230 Pfam PF07021 Methionine biosynthesis protein MetW 19 212 3.0E-90 T 23-04-2016 IPR010743 Methionine biosynthesis MetW RPE_RS21705 1f2bbe5c5654a7394cc29cd768d1fb4b 230 PANTHER PTHR10108 24 216 3.5E-89 T 23-04-2016 RPE_RS21705 1f2bbe5c5654a7394cc29cd768d1fb4b 230 SUPERFAMILY SSF53335 24 210 4.97E-27 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS21705 1f2bbe5c5654a7394cc29cd768d1fb4b 230 Gene3D G3DSA:3.40.50.150 27 199 2.6E-24 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS21705 1f2bbe5c5654a7394cc29cd768d1fb4b 230 TIGRFAM TIGR02081 metW: methionine biosynthesis protein MetW 19 212 7.8E-77 T 23-04-2016 IPR010743 Methionine biosynthesis MetW RPE_RS15450 7ea176fde070e75ea2d99765f0a047ee 219 PIRSF PIRSF024608 5 219 1.1E-66 T 23-04-2016 IPR016823 Sulfur oxidation c-type cytochrome SoxX, type II RPE_RS15450 7ea176fde070e75ea2d99765f0a047ee 219 Gene3D G3DSA:1.10.760.10 107 210 3.0E-17 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS15450 7ea176fde070e75ea2d99765f0a047ee 219 TIGRFAM TIGR04485 thiosulf_SoxX: sulfur oxidation c-type cytochrome SoxX 133 212 1.7E-26 T 23-04-2016 IPR030999 Sulfur oxidation c-type cytochrome SoxX RPE_RS15450 7ea176fde070e75ea2d99765f0a047ee 219 Pfam PF00034 Cytochrome c 133 210 2.8E-6 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS15450 7ea176fde070e75ea2d99765f0a047ee 219 SUPERFAMILY SSF46626 104 211 7.56E-14 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS17970 05a55debc14b481df6b98fe49770ac1c 102 PANTHER PTHR11700 4 102 9.6E-56 T 23-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RPE_RS17970 05a55debc14b481df6b98fe49770ac1c 102 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 28.046 T 23-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RPE_RS17970 05a55debc14b481df6b98fe49770ac1c 102 Gene3D G3DSA:3.30.70.600 4 102 1.7E-46 T 23-04-2016 IPR027486 Ribosomal protein S10 domain RPE_RS17970 05a55debc14b481df6b98fe49770ac1c 102 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 3.6E-48 T 23-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RPE_RS17970 05a55debc14b481df6b98fe49770ac1c 102 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 1.5E-19 T 23-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RPE_RS17970 05a55debc14b481df6b98fe49770ac1c 102 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 1.5E-19 T 23-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RPE_RS17970 05a55debc14b481df6b98fe49770ac1c 102 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 1.5E-19 T 23-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RPE_RS17970 05a55debc14b481df6b98fe49770ac1c 102 Pfam PF00338 Ribosomal protein S10p/S20e 7 101 5.4E-38 T 23-04-2016 IPR027486 Ribosomal protein S10 domain RPE_RS17970 05a55debc14b481df6b98fe49770ac1c 102 SMART SM01403 7 101 1.3E-60 T 23-04-2016 IPR027486 Ribosomal protein S10 domain RPE_RS17970 05a55debc14b481df6b98fe49770ac1c 102 SUPERFAMILY SSF54999 6 102 9.81E-41 T 23-04-2016 IPR027486 Ribosomal protein S10 domain RPE_RS17970 05a55debc14b481df6b98fe49770ac1c 102 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 23-04-2016 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS18255 9bcaadd6a8959ed96afda1856515bf3e 256 Gene3D G3DSA:3.60.10.10 2 255 1.0E-78 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RPE_RS18255 9bcaadd6a8959ed96afda1856515bf3e 256 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 256 1.9E-67 T 23-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 RPE_RS18255 9bcaadd6a8959ed96afda1856515bf3e 256 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 248 1.5E-26 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RPE_RS18255 9bcaadd6a8959ed96afda1856515bf3e 256 PANTHER PTHR22748 1 255 4.1E-139 T 23-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 RPE_RS18255 9bcaadd6a8959ed96afda1856515bf3e 256 PANTHER PTHR22748:SF9 1 255 4.1E-139 T 23-04-2016 RPE_RS18255 9bcaadd6a8959ed96afda1856515bf3e 256 SUPERFAMILY SSF56219 2 256 2.09E-76 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RPE_RS18255 9bcaadd6a8959ed96afda1856515bf3e 256 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 2 255 1.1E-67 T 23-04-2016 RPE_RS14060 59071d37d303b13414a89da6a6399b1a 251 Pfam PF03741 Integral membrane protein TerC family 15 204 2.6E-48 T 23-04-2016 IPR005496 Integral membrane protein TerC GO:0016021 RPE_RS14060 59071d37d303b13414a89da6a6399b1a 251 PANTHER PTHR30060:SF1 1 243 8.1E-106 T 23-04-2016 RPE_RS14060 59071d37d303b13414a89da6a6399b1a 251 PANTHER PTHR30060 1 243 8.1E-106 T 23-04-2016 RPE_RS14305 c693b0a66afff6c301b465728b8d906e 334 Gene3D G3DSA:3.20.20.370 91 132 1.3E-8 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RPE_RS14305 c693b0a66afff6c301b465728b8d906e 334 Gene3D G3DSA:3.20.20.370 214 293 1.3E-8 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RPE_RS14305 c693b0a66afff6c301b465728b8d906e 334 PANTHER PTHR34216 209 332 2.1E-52 T 23-04-2016 RPE_RS14305 c693b0a66afff6c301b465728b8d906e 334 PANTHER PTHR34216 6 146 2.1E-52 T 23-04-2016 RPE_RS14305 c693b0a66afff6c301b465728b8d906e 334 PANTHER PTHR34216:SF1 209 332 2.1E-52 T 23-04-2016 RPE_RS14305 c693b0a66afff6c301b465728b8d906e 334 SUPERFAMILY SSF88713 56 132 8.34E-18 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RPE_RS14305 c693b0a66afff6c301b465728b8d906e 334 SUPERFAMILY SSF88713 214 301 8.34E-18 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RPE_RS14305 c693b0a66afff6c301b465728b8d906e 334 Pfam PF01522 Polysaccharide deacetylase 90 293 4.7E-14 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RPE_RS14305 c693b0a66afff6c301b465728b8d906e 334 PANTHER PTHR34216:SF1 6 146 2.1E-52 T 23-04-2016 RPE_RS07490 c82571ca4bbf83034e46447ce297c3c7 91 Gene3D G3DSA:1.20.5.780 6 86 5.2E-23 T 23-04-2016 RPE_RS07490 c82571ca4bbf83034e46447ce297c3c7 91 SUPERFAMILY SSF47598 7 84 3.71E-18 T 23-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 RPE_RS07490 c82571ca4bbf83034e46447ce297c3c7 91 Pfam PF08681 Protein of unknown function (DUF1778) 10 85 7.3E-20 T 23-04-2016 IPR014795 Vibrio phage ICP1, Orf50 RPE_RS13475 f08d03e65fadb7bfe4a00dae3978f2a1 228 SUPERFAMILY SSF56784 2 220 1.12E-42 T 23-04-2016 IPR023214 HAD-like domain RPE_RS13475 f08d03e65fadb7bfe4a00dae3978f2a1 228 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 150 197 5.7E-12 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RPE_RS13475 f08d03e65fadb7bfe4a00dae3978f2a1 228 PANTHER PTHR18901:SF21 2 214 3.1E-61 T 23-04-2016 RPE_RS13475 f08d03e65fadb7bfe4a00dae3978f2a1 228 PANTHER PTHR18901 2 214 3.1E-61 T 23-04-2016 RPE_RS13475 f08d03e65fadb7bfe4a00dae3978f2a1 228 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 107 120 3.2E-8 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RPE_RS13475 f08d03e65fadb7bfe4a00dae3978f2a1 228 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 186 199 3.2E-8 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RPE_RS13475 f08d03e65fadb7bfe4a00dae3978f2a1 228 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 2 13 3.2E-8 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RPE_RS13475 f08d03e65fadb7bfe4a00dae3978f2a1 228 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 141 157 3.2E-8 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RPE_RS13475 f08d03e65fadb7bfe4a00dae3978f2a1 228 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 159 179 3.2E-8 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RPE_RS13475 f08d03e65fadb7bfe4a00dae3978f2a1 228 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 197 3.9E-22 T 23-04-2016 IPR023214 HAD-like domain RPE_RS13475 f08d03e65fadb7bfe4a00dae3978f2a1 228 Gene3D G3DSA:3.40.50.1000 2 16 1.3E-34 T 23-04-2016 IPR023214 HAD-like domain RPE_RS13475 f08d03e65fadb7bfe4a00dae3978f2a1 228 Gene3D G3DSA:3.40.50.1000 98 220 1.3E-34 T 23-04-2016 IPR023214 HAD-like domain RPE_RS09845 5871da1fac54b579f1dc0fdca5fd4eca 621 PANTHER PTHR30540 13 553 7.0E-227 T 23-04-2016 RPE_RS09845 5871da1fac54b579f1dc0fdca5fd4eca 621 PANTHER PTHR30540:SF7 13 553 7.0E-227 T 23-04-2016 RPE_RS09845 5871da1fac54b579f1dc0fdca5fd4eca 621 Pfam PF02705 K+ potassium transporter 13 543 2.7E-211 T 23-04-2016 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 RPE_RS09845 5871da1fac54b579f1dc0fdca5fd4eca 621 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 4 621 34.615 T 23-04-2016 IPR023051 Potassium uptake protein, low affinity, Kup RPE_RS16705 58e644d2ad4406eed484238c33110dbf 185 Pfam PF00583 Acetyltransferase (GNAT) family 69 143 8.3E-7 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RPE_RS16705 58e644d2ad4406eed484238c33110dbf 185 SUPERFAMILY SSF55729 9 153 2.2E-13 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS16705 58e644d2ad4406eed484238c33110dbf 185 Gene3D G3DSA:3.40.630.30 8 148 2.1E-13 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS00665 dc9b21eb672a58cf3586e2983c789d0e 632 Pfam PF06213 Cobalamin biosynthesis protein CobT 14 282 5.6E-99 T 23-04-2016 IPR006538 Cobalt chelatase, CobT subunit GO:0009236 KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376|UniPathway: UPA00148 RPE_RS00665 dc9b21eb672a58cf3586e2983c789d0e 632 Pfam PF11775 Cobalamin biosynthesis protein CobT VWA domain 398 616 1.8E-124 T 23-04-2016 IPR025861 Cobalamin biosynthesis protein CobT VWA domain KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376|UniPathway: UPA00148 RPE_RS00665 dc9b21eb672a58cf3586e2983c789d0e 632 TIGRFAM TIGR01651 CobT: cobaltochelatase, CobT subunit 18 616 7.6E-285 T 23-04-2016 IPR006538 Cobalt chelatase, CobT subunit GO:0009236 KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376|UniPathway: UPA00148 RPE_RS00665 dc9b21eb672a58cf3586e2983c789d0e 632 Gene3D G3DSA:3.40.50.410 412 587 1.5E-7 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS00665 dc9b21eb672a58cf3586e2983c789d0e 632 PIRSF PIRSF031715 4 623 2.9E-279 T 23-04-2016 IPR006538 Cobalt chelatase, CobT subunit GO:0009236 KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376|UniPathway: UPA00148 RPE_RS00665 dc9b21eb672a58cf3586e2983c789d0e 632 SMART SM00327 409 619 1.2E-9 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS00665 dc9b21eb672a58cf3586e2983c789d0e 632 SUPERFAMILY SSF53300 412 605 4.73E-17 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS01100 e797023284505392fbfcc40fe1e3e02a 333 PANTHER PTHR10584:SF153 1 328 9.7E-108 T 23-04-2016 RPE_RS01100 e797023284505392fbfcc40fe1e3e02a 333 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 274 287 - T 23-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RPE_RS01100 e797023284505392fbfcc40fe1e3e02a 333 Pfam PF00294 pfkB family carbohydrate kinase 52 318 1.2E-46 T 23-04-2016 IPR011611 Carbohydrate kinase PfkB RPE_RS01100 e797023284505392fbfcc40fe1e3e02a 333 SUPERFAMILY SSF53613 5 319 1.43E-77 T 23-04-2016 IPR029056 Ribokinase-like RPE_RS01100 e797023284505392fbfcc40fe1e3e02a 333 Gene3D G3DSA:3.40.1190.20 5 326 4.6E-70 T 23-04-2016 IPR029056 Ribokinase-like RPE_RS01100 e797023284505392fbfcc40fe1e3e02a 333 PANTHER PTHR10584 1 328 9.7E-108 T 23-04-2016 RPE_RS04610 c7842b0aefe4615f44a842cea063113c 447 Gene3D G3DSA:3.90.1150.10 15 68 9.4E-36 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS04610 c7842b0aefe4615f44a842cea063113c 447 Gene3D G3DSA:3.90.1150.10 348 446 9.4E-36 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS04610 c7842b0aefe4615f44a842cea063113c 447 SUPERFAMILY SSF53383 15 443 2.58E-113 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS04610 c7842b0aefe4615f44a842cea063113c 447 PANTHER PTHR11986 19 446 1.6E-234 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RPE_RS04610 c7842b0aefe4615f44a842cea063113c 447 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 256 293 - T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RPE_RS04610 c7842b0aefe4615f44a842cea063113c 447 Pfam PF00202 Aminotransferase class-III 34 443 6.1E-103 T 23-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RPE_RS04610 c7842b0aefe4615f44a842cea063113c 447 Gene3D G3DSA:3.40.640.10 70 346 2.7E-84 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS04610 c7842b0aefe4615f44a842cea063113c 447 PANTHER PTHR11986:SF80 19 446 1.6E-234 T 23-04-2016 RPE_RS15655 f1dac6b930c185d5d9f00291c740db17 84 PANTHER PTHR33404 1 81 8.4E-17 T 23-04-2016 RPE_RS15655 f1dac6b930c185d5d9f00291c740db17 84 Pfam PF03776 Septum formation topological specificity factor MinE 13 80 1.9E-19 T 23-04-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 RPE_RS15655 f1dac6b930c185d5d9f00291c740db17 84 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 82 16.266 T 23-04-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 RPE_RS15655 f1dac6b930c185d5d9f00291c740db17 84 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 81 1.8E-21 T 23-04-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 RPE_RS15655 f1dac6b930c185d5d9f00291c740db17 84 SUPERFAMILY SSF55229 34 81 8.24E-12 T 23-04-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 RPE_RS15655 f1dac6b930c185d5d9f00291c740db17 84 Gene3D G3DSA:3.30.1070.10 34 81 1.8E-13 T 23-04-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 RPE_RS16565 5ba20ccfb47cdfae6ee929ffa9b2acf1 295 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 3 295 1.3E-67 T 23-04-2016 IPR005229 Conserved hypothetical protein CHP00255 RPE_RS16565 5ba20ccfb47cdfae6ee929ffa9b2acf1 295 PANTHER PTHR30636 2 295 1.2E-88 T 23-04-2016 RPE_RS16565 5ba20ccfb47cdfae6ee929ffa9b2acf1 295 Pfam PF03755 YicC-like family, N-terminal region 4 157 1.6E-36 T 23-04-2016 IPR013527 YicC-like, N-terminal RPE_RS16565 5ba20ccfb47cdfae6ee929ffa9b2acf1 295 Pfam PF08340 Domain of unknown function (DUF1732) 211 295 3.1E-33 T 23-04-2016 IPR013551 Domain of unknown function DUF1732 RPE_RS16235 001aecd9e108bbad95667ff72a7426f4 185 PANTHER PTHR30173 1 167 1.4E-28 T 23-04-2016 RPE_RS16235 001aecd9e108bbad95667ff72a7426f4 185 Gene3D G3DSA:1.10.1740.10 4 78 9.2E-7 T 23-04-2016 RPE_RS16235 001aecd9e108bbad95667ff72a7426f4 185 Pfam PF08281 Sigma-70, region 4 109 155 7.9E-9 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS16235 001aecd9e108bbad95667ff72a7426f4 185 SUPERFAMILY SSF88659 92 169 1.07E-12 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS16235 001aecd9e108bbad95667ff72a7426f4 185 SUPERFAMILY SSF88946 5 97 1.45E-10 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS16235 001aecd9e108bbad95667ff72a7426f4 185 Pfam PF04542 Sigma-70 region 2 13 78 1.5E-6 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS16235 001aecd9e108bbad95667ff72a7426f4 185 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 10 163 9.1E-18 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS16235 001aecd9e108bbad95667ff72a7426f4 185 Gene3D G3DSA:1.10.10.10 103 166 4.4E-7 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS16235 001aecd9e108bbad95667ff72a7426f4 185 PANTHER PTHR30173:SF30 1 167 1.4E-28 T 23-04-2016 RPE_RS03580 35bb1889f1879a6a24b638356017fc58 308 PANTHER PTHR30269 11 296 3.0E-97 T 23-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 RPE_RS03580 35bb1889f1879a6a24b638356017fc58 308 PANTHER PTHR30269:SF15 11 296 3.0E-97 T 23-04-2016 RPE_RS03580 35bb1889f1879a6a24b638356017fc58 308 Pfam PF01925 Sulfite exporter TauE/SafE 18 286 2.2E-48 T 23-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 RPE_RS18325 7f463f79ae16e434ff63b32e46b3a0f7 350 PANTHER PTHR34184:SF2 32 350 2.3E-155 T 23-04-2016 RPE_RS18325 7f463f79ae16e434ff63b32e46b3a0f7 350 PANTHER PTHR34184 32 350 2.3E-155 T 23-04-2016 RPE_RS18325 7f463f79ae16e434ff63b32e46b3a0f7 350 Pfam PF03773 Predicted permease 53 346 6.6E-65 T 23-04-2016 IPR005524 Predicted permease DUF318 RPE_RS19005 02cfdf69d757b8f7b68b44d1fb859ca3 382 SUPERFAMILY SSF53822 27 379 4.93E-63 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RPE_RS19005 02cfdf69d757b8f7b68b44d1fb859ca3 382 PANTHER PTHR30483 1 381 6.0E-172 T 23-04-2016 RPE_RS19005 02cfdf69d757b8f7b68b44d1fb859ca3 382 Gene3D G3DSA:3.40.50.2300 143 300 1.8E-29 T 23-04-2016 RPE_RS19005 02cfdf69d757b8f7b68b44d1fb859ca3 382 PANTHER PTHR30483:SF7 1 381 6.0E-172 T 23-04-2016 RPE_RS19005 02cfdf69d757b8f7b68b44d1fb859ca3 382 Pfam PF13458 Periplasmic binding protein 28 360 3.2E-43 T 23-04-2016 IPR028081 Leucine-binding protein domain RPE_RS19005 02cfdf69d757b8f7b68b44d1fb859ca3 382 Gene3D G3DSA:3.40.50.2300 301 360 7.7E-26 T 23-04-2016 RPE_RS19005 02cfdf69d757b8f7b68b44d1fb859ca3 382 Gene3D G3DSA:3.40.50.2300 22 142 7.7E-26 T 23-04-2016 RPE_RS09320 248844ca0c522e82325f8549a9eca85f 91 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 71 2.0E-10 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RPE_RS09320 248844ca0c522e82325f8549a9eca85f 91 SUPERFAMILY SSF143120 1 41 2.22E-7 T 23-04-2016 RPE_RS09320 248844ca0c522e82325f8549a9eca85f 91 Gene3D G3DSA:3.40.1620.10 1 40 1.8E-5 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RPE_RS09320 248844ca0c522e82325f8549a9eca85f 91 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 4 40 5.6E-8 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RPE_RS08510 a6b564a87aa6cdb2d2a0896a1d094953 318 Gene3D G3DSA:1.10.10.10 2 80 3.6E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS08510 a6b564a87aa6cdb2d2a0896a1d094953 318 SUPERFAMILY SSF53850 89 292 7.42E-36 T 23-04-2016 RPE_RS08510 a6b564a87aa6cdb2d2a0896a1d094953 318 PANTHER PTHR30126:SF10 1 306 2.3E-147 T 23-04-2016 RPE_RS08510 a6b564a87aa6cdb2d2a0896a1d094953 318 Pfam PF03466 LysR substrate binding domain 89 286 1.3E-34 T 23-04-2016 IPR005119 LysR, substrate-binding RPE_RS08510 a6b564a87aa6cdb2d2a0896a1d094953 318 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 3.1E-20 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS08510 a6b564a87aa6cdb2d2a0896a1d094953 318 Gene3D G3DSA:3.40.190.10 191 257 8.1E-11 T 23-04-2016 RPE_RS08510 a6b564a87aa6cdb2d2a0896a1d094953 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 7.6E-9 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS08510 a6b564a87aa6cdb2d2a0896a1d094953 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 7.6E-9 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS08510 a6b564a87aa6cdb2d2a0896a1d094953 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 7.6E-9 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS08510 a6b564a87aa6cdb2d2a0896a1d094953 318 Gene3D G3DSA:3.40.190.10 89 190 2.6E-19 T 23-04-2016 RPE_RS08510 a6b564a87aa6cdb2d2a0896a1d094953 318 SUPERFAMILY SSF46785 2 111 5.9E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS08510 a6b564a87aa6cdb2d2a0896a1d094953 318 PANTHER PTHR30126 1 306 2.3E-147 T 23-04-2016 RPE_RS13870 c02ec47e61ad3c9a0308d9b693a1f951 82 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 7 67 1.8E-32 T 23-04-2016 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 RPE_RS13870 c02ec47e61ad3c9a0308d9b693a1f951 82 PANTHER PTHR34772 3 81 1.3E-36 T 23-04-2016 RPE_RS13870 c02ec47e61ad3c9a0308d9b693a1f951 82 PANTHER PTHR34772:SF1 3 81 1.3E-36 T 23-04-2016 RPE_RS13870 c02ec47e61ad3c9a0308d9b693a1f951 82 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 2 67 29.595 T 23-04-2016 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 RPE_RS13870 c02ec47e61ad3c9a0308d9b693a1f951 82 Gene3D G3DSA:2.30.30.100 5 76 9.2E-36 T 23-04-2016 RPE_RS13870 c02ec47e61ad3c9a0308d9b693a1f951 82 SUPERFAMILY SSF50182 8 72 7.63E-25 T 23-04-2016 IPR010920 LSM domain RPE_RS14620 0670d889ef212d0446c3c687372f013e 668 Pfam PF00289 Biotin carboxylase, N-terminal domain 10 118 8.9E-45 T 23-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain RPE_RS14620 0670d889ef212d0446c3c687372f013e 668 Gene3D G3DSA:2.40.50.100 596 664 2.9E-19 T 23-04-2016 RPE_RS14620 0670d889ef212d0446c3c687372f013e 668 PANTHER PTHR18866:SF102 1 667 0.0 T 23-04-2016 RPE_RS14620 0670d889ef212d0446c3c687372f013e 668 PANTHER PTHR18866 1 667 0.0 T 23-04-2016 RPE_RS14620 0670d889ef212d0446c3c687372f013e 668 Pfam PF02785 Biotin carboxylase C-terminal domain 343 451 5.4E-39 T 23-04-2016 IPR005482 Biotin carboxylase, C-terminal RPE_RS14620 0670d889ef212d0446c3c687372f013e 668 Gene3D G3DSA:3.40.50.20 10 136 8.5E-50 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RPE_RS14620 0670d889ef212d0446c3c687372f013e 668 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 125 329 1.1E-74 T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RPE_RS14620 0670d889ef212d0446c3c687372f013e 668 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 293 300 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RPE_RS14620 0670d889ef212d0446c3c687372f013e 668 Pfam PF00364 Biotin-requiring enzyme 598 662 3.6E-12 T 23-04-2016 IPR000089 Biotin/lipoyl attachment RPE_RS14620 0670d889ef212d0446c3c687372f013e 668 Gene3D G3DSA:3.30.1490.20 137 210 1.4E-29 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RPE_RS14620 0670d889ef212d0446c3c687372f013e 668 SUPERFAMILY SSF51246 338 455 2.77E-39 T 23-04-2016 IPR011054 Rudiment single hybrid motif RPE_RS14620 0670d889ef212d0446c3c687372f013e 668 SUPERFAMILY SSF51230 593 664 2.05E-16 T 23-04-2016 IPR011053 Single hybrid motif RPE_RS14620 0670d889ef212d0446c3c687372f013e 668 SUPERFAMILY SSF52440 4 121 1.51E-48 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RPE_RS14620 0670d889ef212d0446c3c687372f013e 668 SUPERFAMILY SSF56059 91 355 7.6E-70 T 23-04-2016 RPE_RS14620 0670d889ef212d0446c3c687372f013e 668 SMART SM00878 343 450 1.2E-54 T 23-04-2016 IPR005482 Biotin carboxylase, C-terminal RPE_RS14620 0670d889ef212d0446c3c687372f013e 668 Gene3D G3DSA:3.30.470.20 211 455 2.5E-99 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RPE_RS14620 0670d889ef212d0446c3c687372f013e 668 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 161 175 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RPE_RS18960 9a06b2d06afa482106ca97e3df0449cc 574 Pfam PF02254 TrkA-N domain 412 535 8.9E-21 T 23-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RPE_RS18960 9a06b2d06afa482106ca97e3df0449cc 574 Pfam PF00999 Sodium/hydrogen exchanger family 9 368 2.4E-55 T 23-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RPE_RS18960 9a06b2d06afa482106ca97e3df0449cc 574 PANTHER PTHR16254 2 532 1.1E-152 T 23-04-2016 RPE_RS18960 9a06b2d06afa482106ca97e3df0449cc 574 Gene3D G3DSA:3.40.50.720 409 545 7.9E-23 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS18960 9a06b2d06afa482106ca97e3df0449cc 574 PANTHER PTHR16254:SF14 2 532 1.1E-152 T 23-04-2016 RPE_RS18960 9a06b2d06afa482106ca97e3df0449cc 574 SUPERFAMILY SSF51735 411 546 1.67E-18 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS04920 d791c18efe233de3949053a0cd9081a7 174 PANTHER PTHR36448 1 173 5.2E-69 T 23-04-2016 RPE_RS04920 d791c18efe233de3949053a0cd9081a7 174 PIRSF PIRSF019307 2 174 9.2E-70 T 23-04-2016 IPR014500 Uncharacterised conserved protein UCP019307, cupin-type RPE_RS04920 d791c18efe233de3949053a0cd9081a7 174 PANTHER PTHR36448:SF2 1 173 5.2E-69 T 23-04-2016 RPE_RS04920 d791c18efe233de3949053a0cd9081a7 174 Gene3D G3DSA:2.60.120.10 42 141 7.7E-17 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS04920 d791c18efe233de3949053a0cd9081a7 174 SUPERFAMILY SSF51182 11 141 1.54E-21 T 23-04-2016 IPR011051 RmlC-like cupin domain RPE_RS23855 9e06b72ae7769256c6a77fe89491da33 274 PANTHER PTHR36303:SF1 2 269 3.6E-141 T 23-04-2016 RPE_RS23855 9e06b72ae7769256c6a77fe89491da33 274 SUPERFAMILY SSF56300 1 260 1.04E-84 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RPE_RS23855 9e06b72ae7769256c6a77fe89491da33 274 Gene3D G3DSA:3.60.21.30 1 272 2.6E-111 T 23-04-2016 RPE_RS23855 9e06b72ae7769256c6a77fe89491da33 274 PANTHER PTHR36303 2 269 3.6E-141 T 23-04-2016 RPE_RS23855 9e06b72ae7769256c6a77fe89491da33 274 TIGRFAM TIGR00282 TIGR00282: metallophosphoesterase, MG_246/BB_0505 family 1 260 4.4E-80 T 23-04-2016 IPR005235 Metallophosphoesterase, YmdB-like RPE_RS23855 9e06b72ae7769256c6a77fe89491da33 274 PIRSF PIRSF004789 1 265 1.1E-88 T 23-04-2016 IPR005235 Metallophosphoesterase, YmdB-like RPE_RS23855 9e06b72ae7769256c6a77fe89491da33 274 Pfam PF13277 YmdB-like protein 4 257 5.6E-102 T 23-04-2016 IPR005235 Metallophosphoesterase, YmdB-like RPE_RS06150 4d64b92882c244d5f8152799bc399a5c 356 SUPERFAMILY SSF53850 37 246 6.21E-34 T 23-04-2016 RPE_RS06150 4d64b92882c244d5f8152799bc399a5c 356 Gene3D G3DSA:3.40.190.10 128 236 2.1E-11 T 23-04-2016 RPE_RS06150 4d64b92882c244d5f8152799bc399a5c 356 TIGRFAM TIGR03427 ABC_peri_uca: ABC transporter periplasmic binding protein, urea carboxylase region 29 356 6.8E-169 T 23-04-2016 IPR017793 ABC transporter, urea utilisation-associated, substrate-binding protein RPE_RS06150 4d64b92882c244d5f8152799bc399a5c 356 Gene3D G3DSA:3.40.190.10 38 87 4.4E-4 T 23-04-2016 RPE_RS06150 4d64b92882c244d5f8152799bc399a5c 356 Pfam PF13379 NMT1-like family 37 247 1.4E-9 T 23-04-2016 RPE_RS19660 c7ec1b73073dfe4d73c29b20cc80b415 482 SMART SM00220 15 273 7.3E-23 T 23-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RPE_RS19660 c7ec1b73073dfe4d73c29b20cc80b415 482 PANTHER PTHR24362:SF160 386 412 1.6E-57 T 23-04-2016 RPE_RS19660 c7ec1b73073dfe4d73c29b20cc80b415 482 PANTHER PTHR24362:SF160 12 317 1.6E-57 T 23-04-2016 RPE_RS19660 c7ec1b73073dfe4d73c29b20cc80b415 482 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 133 145 - T 23-04-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 RPE_RS19660 c7ec1b73073dfe4d73c29b20cc80b415 482 Pfam PF00069 Protein kinase domain 18 268 1.0E-28 T 23-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RPE_RS19660 c7ec1b73073dfe4d73c29b20cc80b415 482 Gene3D G3DSA:3.30.200.20 12 122 2.4E-12 T 23-04-2016 RPE_RS19660 c7ec1b73073dfe4d73c29b20cc80b415 482 SUPERFAMILY SSF56112 9 286 2.0E-57 T 23-04-2016 IPR011009 Protein kinase-like domain RPE_RS19660 c7ec1b73073dfe4d73c29b20cc80b415 482 Gene3D G3DSA:3.40.50.620 325 461 1.2E-19 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS19660 c7ec1b73073dfe4d73c29b20cc80b415 482 SUPERFAMILY SSF52402 347 462 1.0E-13 T 23-04-2016 RPE_RS19660 c7ec1b73073dfe4d73c29b20cc80b415 482 Pfam PF00582 Universal stress protein family 323 461 1.1E-13 T 23-04-2016 IPR006016 UspA GO:0006950 RPE_RS19660 c7ec1b73073dfe4d73c29b20cc80b415 482 PANTHER PTHR24362 386 412 1.6E-57 T 23-04-2016 RPE_RS19660 c7ec1b73073dfe4d73c29b20cc80b415 482 PANTHER PTHR24362 12 317 1.6E-57 T 23-04-2016 RPE_RS19660 c7ec1b73073dfe4d73c29b20cc80b415 482 Gene3D G3DSA:1.10.510.10 123 275 7.5E-38 T 23-04-2016 RPE_RS16125 d6b8567f7b4ba3ec17548f80fa78b097 511 SUPERFAMILY SSF56801 2 501 3.66E-145 T 23-04-2016 RPE_RS16125 d6b8567f7b4ba3ec17548f80fa78b097 511 Pfam PF13193 AMP-binding enzyme C-terminal domain 413 488 1.7E-17 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RPE_RS16125 d6b8567f7b4ba3ec17548f80fa78b097 511 Gene3D G3DSA:3.30.300.30 400 496 3.4E-30 T 23-04-2016 RPE_RS16125 d6b8567f7b4ba3ec17548f80fa78b097 511 PANTHER PTHR24096 1 497 3.5E-165 T 23-04-2016 RPE_RS16125 d6b8567f7b4ba3ec17548f80fa78b097 511 Gene3D G3DSA:2.30.38.10 322 394 2.6E-26 T 23-04-2016 RPE_RS16125 d6b8567f7b4ba3ec17548f80fa78b097 511 Gene3D G3DSA:3.40.50.980 167 320 9.8E-42 T 23-04-2016 RPE_RS16125 d6b8567f7b4ba3ec17548f80fa78b097 511 Gene3D G3DSA:3.40.50.980 3 166 5.3E-30 T 23-04-2016 RPE_RS16125 d6b8567f7b4ba3ec17548f80fa78b097 511 Pfam PF00501 AMP-binding enzyme 9 404 2.0E-92 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS16125 d6b8567f7b4ba3ec17548f80fa78b097 511 PANTHER PTHR24096:SF206 1 497 3.5E-165 T 23-04-2016 RPE_RS23675 b08621d96c94b8223a080f8ac6390f6a 306 PANTHER PTHR30217 1 215 1.7E-31 T 23-04-2016 RPE_RS23675 b08621d96c94b8223a080f8ac6390f6a 306 Pfam PF01136 Peptidase family U32 94 288 3.3E-23 T 23-04-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RPE_RS23675 b08621d96c94b8223a080f8ac6390f6a 306 PANTHER PTHR30217:SF8 1 215 1.7E-31 T 23-04-2016 RPE_RS16180 cfdfcdca537f2baf1f74cb3ae6c46e30 773 Gene3D G3DSA:3.50.50.60 1 42 1.9E-48 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS16180 cfdfcdca537f2baf1f74cb3ae6c46e30 773 Gene3D G3DSA:3.50.50.60 253 385 1.9E-48 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS16180 cfdfcdca537f2baf1f74cb3ae6c46e30 773 Gene3D G3DSA:3.50.50.60 96 156 1.9E-48 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS16180 cfdfcdca537f2baf1f74cb3ae6c46e30 773 PANTHER PTHR22893 389 741 5.5E-211 T 23-04-2016 RPE_RS16180 cfdfcdca537f2baf1f74cb3ae6c46e30 773 SUPERFAMILY SSF51905 1 149 6.48E-39 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS16180 cfdfcdca537f2baf1f74cb3ae6c46e30 773 SUPERFAMILY SSF51905 250 346 6.48E-39 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS16180 cfdfcdca537f2baf1f74cb3ae6c46e30 773 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 282 298 6.2E-9 T 23-04-2016 RPE_RS16180 cfdfcdca537f2baf1f74cb3ae6c46e30 773 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 128 143 6.2E-9 T 23-04-2016 RPE_RS16180 cfdfcdca537f2baf1f74cb3ae6c46e30 773 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 6.2E-9 T 23-04-2016 RPE_RS16180 cfdfcdca537f2baf1f74cb3ae6c46e30 773 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 267 282 6.2E-9 T 23-04-2016 RPE_RS16180 cfdfcdca537f2baf1f74cb3ae6c46e30 773 Gene3D G3DSA:3.20.20.70 401 751 6.4E-106 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS16180 cfdfcdca537f2baf1f74cb3ae6c46e30 773 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 407 733 7.8E-53 T 23-04-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 RPE_RS16180 cfdfcdca537f2baf1f74cb3ae6c46e30 773 Pfam PF01494 FAD binding domain 5 324 4.3E-6 T 23-04-2016 IPR002938 FAD-binding domain GO:0071949 RPE_RS16180 cfdfcdca537f2baf1f74cb3ae6c46e30 773 PANTHER PTHR22893:SF29 389 741 5.5E-211 T 23-04-2016 RPE_RS16180 cfdfcdca537f2baf1f74cb3ae6c46e30 773 SUPERFAMILY SSF51395 401 759 2.44E-101 T 23-04-2016 RPE_RS20445 3d068b717f6bd03e4ec35e35f3470fcf 99 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 10 55 12.558 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 RPE_RS20445 3d068b717f6bd03e4ec35e35f3470fcf 99 PANTHER PTHR21109 2 82 9.6E-47 T 23-04-2016 RPE_RS20445 3d068b717f6bd03e4ec35e35f3470fcf 99 ProSitePatterns PS01181 Ribosomal protein S21 signature. 11 23 - T 23-04-2016 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS20445 3d068b717f6bd03e4ec35e35f3470fcf 99 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 1 56 3.6E-21 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 RPE_RS20445 3d068b717f6bd03e4ec35e35f3470fcf 99 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 13 40 3.0E-9 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 RPE_RS20445 3d068b717f6bd03e4ec35e35f3470fcf 99 PANTHER PTHR21109:SF3 2 82 9.6E-47 T 23-04-2016 RPE_RS20445 3d068b717f6bd03e4ec35e35f3470fcf 99 Pfam PF01165 Ribosomal protein S21 2 55 5.7E-20 T 23-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 RPE_RS22860 f8e1bdee14c22357bab3aa083333a5ea 337 PIRSF PIRSF006268 3 336 8.2E-72 T 23-04-2016 IPR024932 Flavin transferase ApbE GO:0017013 RPE_RS22860 f8e1bdee14c22357bab3aa083333a5ea 337 SUPERFAMILY SSF143631 26 335 4.45E-83 T 23-04-2016 IPR003374 ApbE-like domain RPE_RS22860 f8e1bdee14c22357bab3aa083333a5ea 337 PANTHER PTHR30040:SF3 25 336 1.2E-93 T 23-04-2016 RPE_RS22860 f8e1bdee14c22357bab3aa083333a5ea 337 PANTHER PTHR30040 25 336 1.2E-93 T 23-04-2016 RPE_RS22860 f8e1bdee14c22357bab3aa083333a5ea 337 Pfam PF02424 ApbE family 34 312 8.5E-69 T 23-04-2016 IPR024932 Flavin transferase ApbE GO:0017013 RPE_RS01165 e7f35ddd6a53be09f654c1f8e9a54589 160 Pfam PF06319 Protein of unknown function (DUF1052) 12 153 8.8E-70 T 23-04-2016 IPR009394 DNA repair protein MmcB-like RPE_RS01165 e7f35ddd6a53be09f654c1f8e9a54589 160 PIRSF PIRSF031796 2 159 8.4E-72 T 23-04-2016 IPR009394 DNA repair protein MmcB-like RPE_RS22465 cdfce6b16d5c85276f54eeef31b022a0 166 Pfam PF07378 Flagellar protein FlbT 3 119 2.1E-24 T 23-04-2016 IPR009967 Flagellum biosynthesis repressor FlbT GO:0006402|GO:0048027|GO:1902209 RPE_RS01800 dfe3617d46569ef0d0457894201b1cc3 313 Gene3D G3DSA:3.30.470.20 192 297 1.3E-41 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RPE_RS01800 dfe3617d46569ef0d0457894201b1cc3 313 Gene3D G3DSA:3.40.50.20 3 129 3.0E-49 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RPE_RS01800 dfe3617d46569ef0d0457894201b1cc3 313 Gene3D G3DSA:3.30.1490.20 137 191 5.4E-23 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RPE_RS01800 dfe3617d46569ef0d0457894201b1cc3 313 PANTHER PTHR21621 1 313 1.7E-124 T 23-04-2016 RPE_RS01800 dfe3617d46569ef0d0457894201b1cc3 313 SUPERFAMILY SSF56059 124 310 5.2E-54 T 23-04-2016 RPE_RS01800 dfe3617d46569ef0d0457894201b1cc3 313 SUPERFAMILY SSF52440 3 122 6.62E-40 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RPE_RS01800 dfe3617d46569ef0d0457894201b1cc3 313 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 124 295 9.0E-69 T 23-04-2016 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 RPE_RS01800 dfe3617d46569ef0d0457894201b1cc3 313 Hamap MF_00162 Glutathione synthetase [gshB]. 1 313 154.099 T 23-04-2016 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 RPE_RS01800 dfe3617d46569ef0d0457894201b1cc3 313 TIGRFAM TIGR01380 glut_syn: glutathione synthase 3 311 2.2E-118 T 23-04-2016 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 RPE_RS01800 dfe3617d46569ef0d0457894201b1cc3 313 PANTHER PTHR21621:SF4 1 313 1.7E-124 T 23-04-2016 RPE_RS01800 dfe3617d46569ef0d0457894201b1cc3 313 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 3 120 2.8E-40 T 23-04-2016 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 RPE_RS18485 ad9f822d138dcb4d3004dcc0c8d2362a 880 SUPERFAMILY SSF56796 449 863 1.31E-114 T 23-04-2016 RPE_RS18485 ad9f822d138dcb4d3004dcc0c8d2362a 880 SUPERFAMILY SSF53720 7 453 2.36E-83 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RPE_RS18485 ad9f822d138dcb4d3004dcc0c8d2362a 880 PANTHER PTHR11496 360 863 3.2E-288 T 23-04-2016 RPE_RS18485 ad9f822d138dcb4d3004dcc0c8d2362a 880 PANTHER PTHR11496:SF79 360 863 3.2E-288 T 23-04-2016 RPE_RS18485 ad9f822d138dcb4d3004dcc0c8d2362a 880 Gene3D G3DSA:1.20.1090.10 642 858 7.9E-64 T 23-04-2016 RPE_RS18485 ad9f822d138dcb4d3004dcc0c8d2362a 880 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 630 658 - T 23-04-2016 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RPE_RS18485 ad9f822d138dcb4d3004dcc0c8d2362a 880 Gene3D G3DSA:3.40.50.1970 450 641 1.8E-60 T 23-04-2016 RPE_RS18485 ad9f822d138dcb4d3004dcc0c8d2362a 880 Gene3D G3DSA:3.40.309.10 309 404 6.7E-26 T 23-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RPE_RS18485 ad9f822d138dcb4d3004dcc0c8d2362a 880 Gene3D G3DSA:3.40.309.10 226 273 6.7E-26 T 23-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RPE_RS18485 ad9f822d138dcb4d3004dcc0c8d2362a 880 Pfam PF00171 Aldehyde dehydrogenase family 7 268 1.2E-26 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RPE_RS18485 ad9f822d138dcb4d3004dcc0c8d2362a 880 PIRSF PIRSF000111 2 862 0.0 T 23-04-2016 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase GO:0004022|GO:0006066|GO:0008774|GO:0015976|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00592+1.1.1.1|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00650+1.2.1.10|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7085|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7180|MetaCyc: PWY-7396 RPE_RS18485 ad9f822d138dcb4d3004dcc0c8d2362a 880 Gene3D G3DSA:3.40.605.10 5 225 2.7E-25 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RPE_RS18485 ad9f822d138dcb4d3004dcc0c8d2362a 880 Pfam PF00465 Iron-containing alcohol dehydrogenase 457 846 1.3E-111 T 23-04-2016 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 RPE_RS20480 c8504c03d0651fee803559cb27cbd07d 376 SUPERFAMILY SSF51735 136 316 7.24E-38 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS20480 c8504c03d0651fee803559cb27cbd07d 376 SUPERFAMILY SSF52283 1 167 4.59E-50 T 23-04-2016 RPE_RS20480 c8504c03d0651fee803559cb27cbd07d 376 Gene3D G3DSA:3.40.50.1770 196 367 6.4E-41 T 23-04-2016 RPE_RS20480 c8504c03d0651fee803559cb27cbd07d 376 PANTHER PTHR10160 1 374 6.1E-176 T 23-04-2016 RPE_RS20480 c8504c03d0651fee803559cb27cbd07d 376 SMART SM01003 4 136 2.3E-59 T 23-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RPE_RS20480 c8504c03d0651fee803559cb27cbd07d 376 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 140 368 1.3E-72 T 23-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RPE_RS20480 c8504c03d0651fee803559cb27cbd07d 376 SMART SM01002 145 311 3.1E-90 T 23-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RPE_RS20480 c8504c03d0651fee803559cb27cbd07d 376 Gene3D G3DSA:3.90.180.10 169 195 1.2E-4 T 23-04-2016 IPR011032 GroES-like RPE_RS20480 c8504c03d0651fee803559cb27cbd07d 376 Gene3D G3DSA:3.40.50.1770 1 168 1.4E-55 T 23-04-2016 RPE_RS20480 c8504c03d0651fee803559cb27cbd07d 376 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 5 136 9.8E-41 T 23-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RPE_RS02295 fef8afbe1df669252157cc30a265191d 447 TIGRFAM TIGR01499 folC: bifunctional protein FolC 31 440 1.2E-106 T 23-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 RPE_RS02295 fef8afbe1df669252157cc30a265191d 447 PANTHER PTHR11136 13 441 3.8E-113 T 23-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 RPE_RS02295 fef8afbe1df669252157cc30a265191d 447 SUPERFAMILY SSF53244 300 443 3.66E-21 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RPE_RS02295 fef8afbe1df669252157cc30a265191d 447 PIRSF PIRSF001563 7 445 4.5E-105 T 23-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 RPE_RS02295 fef8afbe1df669252157cc30a265191d 447 SUPERFAMILY SSF53623 13 297 5.36E-84 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RPE_RS02295 fef8afbe1df669252157cc30a265191d 447 PANTHER PTHR11136:SF0 13 441 3.8E-113 T 23-04-2016 RPE_RS02295 fef8afbe1df669252157cc30a265191d 447 Pfam PF08245 Mur ligase middle domain 54 274 1.4E-9 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RPE_RS02295 fef8afbe1df669252157cc30a265191d 447 Gene3D G3DSA:3.40.1190.10 12 298 2.7E-90 T 23-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RPE_RS02295 fef8afbe1df669252157cc30a265191d 447 Gene3D G3DSA:3.90.190.20 300 443 4.4E-26 T 23-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RPE_RS02295 fef8afbe1df669252157cc30a265191d 447 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 148 163 - T 23-04-2016 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 RPE_RS10920 1549f002ef7f8c2cb2e1d47811db06d5 171 PIRSF PIRSF000194 1 170 2.6E-60 T 23-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RPE_RS10920 1549f002ef7f8c2cb2e1d47811db06d5 171 PANTHER PTHR22778 1 169 4.2E-40 T 23-04-2016 RPE_RS10920 1549f002ef7f8c2cb2e1d47811db06d5 171 SUPERFAMILY SSF53597 4 168 4.77E-53 T 23-04-2016 IPR024072 Dihydrofolate reductase-like domain RPE_RS10920 1549f002ef7f8c2cb2e1d47811db06d5 171 Pfam PF00186 Dihydrofolate reductase 5 167 5.3E-53 T 23-04-2016 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0006545|GO:0009165|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RPE_RS10920 1549f002ef7f8c2cb2e1d47811db06d5 171 PANTHER PTHR22778:SF16 1 169 4.2E-40 T 23-04-2016 RPE_RS10920 1549f002ef7f8c2cb2e1d47811db06d5 171 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 15 37 - T 23-04-2016 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RPE_RS10920 1549f002ef7f8c2cb2e1d47811db06d5 171 PRINTS PR00070 Dihydrofolate reductase signature 42 53 1.1E-13 T 23-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RPE_RS10920 1549f002ef7f8c2cb2e1d47811db06d5 171 PRINTS PR00070 Dihydrofolate reductase signature 15 25 1.1E-13 T 23-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RPE_RS10920 1549f002ef7f8c2cb2e1d47811db06d5 171 PRINTS PR00070 Dihydrofolate reductase signature 99 113 1.1E-13 T 23-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RPE_RS10920 1549f002ef7f8c2cb2e1d47811db06d5 171 PRINTS PR00070 Dihydrofolate reductase signature 29 37 1.1E-13 T 23-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RPE_RS10920 1549f002ef7f8c2cb2e1d47811db06d5 171 Gene3D G3DSA:3.40.430.10 4 168 3.8E-56 T 23-04-2016 IPR024072 Dihydrofolate reductase-like domain RPE_RS07380 116d673b31f791cc7fac09f6189e35d2 351 Pfam PF13439 Glycosyltransferase Family 4 14 165 1.9E-19 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RPE_RS07380 116d673b31f791cc7fac09f6189e35d2 351 Pfam PF13692 Glycosyl transferases group 1 178 295 1.2E-17 T 23-04-2016 RPE_RS07380 116d673b31f791cc7fac09f6189e35d2 351 PANTHER PTHR12526:SF363 1 332 2.5E-85 T 23-04-2016 RPE_RS07380 116d673b31f791cc7fac09f6189e35d2 351 SUPERFAMILY SSF53756 1 325 2.41E-64 T 23-04-2016 RPE_RS07380 116d673b31f791cc7fac09f6189e35d2 351 PANTHER PTHR12526 1 332 2.5E-85 T 23-04-2016 RPE_RS07380 116d673b31f791cc7fac09f6189e35d2 351 Gene3D G3DSA:3.40.50.2000 174 283 1.4E-16 T 23-04-2016 RPE_RS19225 ee215f8725df57a779024efaa28b9ead 355 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 22 348 5.2E-118 T 23-04-2016 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 RPE_RS19225 ee215f8725df57a779024efaa28b9ead 355 Hamap MF_00230 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [cobT]. 20 354 32.337 T 23-04-2016 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 RPE_RS19225 ee215f8725df57a779024efaa28b9ead 355 Gene3D G3DSA:1.10.1610.10 16 81 1.1E-23 T 23-04-2016 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 RPE_RS19225 ee215f8725df57a779024efaa28b9ead 355 PANTHER PTHR21712:SF4 17 350 2.4E-95 T 23-04-2016 RPE_RS19225 ee215f8725df57a779024efaa28b9ead 355 PANTHER PTHR21712 17 350 2.4E-95 T 23-04-2016 RPE_RS19225 ee215f8725df57a779024efaa28b9ead 355 Pfam PF02277 Phosphoribosyltransferase 20 348 1.6E-114 T 23-04-2016 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 RPE_RS19225 ee215f8725df57a779024efaa28b9ead 355 SUPERFAMILY SSF52733 16 350 4.45E-103 T 23-04-2016 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 RPE_RS19225 ee215f8725df57a779024efaa28b9ead 355 Gene3D G3DSA:3.40.50.10210 82 335 9.3E-99 T 23-04-2016 RPE_RS13350 169eea015925f7411198763c3e00b8e3 400 PRINTS PR00812 Bacterial general secretion pathway protein F signature 364 378 4.6E-8 T 23-04-2016 IPR003004 GspF/PilC family RPE_RS13350 169eea015925f7411198763c3e00b8e3 400 PRINTS PR00812 Bacterial general secretion pathway protein F signature 162 190 4.6E-8 T 23-04-2016 IPR003004 GspF/PilC family RPE_RS13350 169eea015925f7411198763c3e00b8e3 400 PRINTS PR00812 Bacterial general secretion pathway protein F signature 380 399 4.6E-8 T 23-04-2016 IPR003004 GspF/PilC family RPE_RS13350 169eea015925f7411198763c3e00b8e3 400 PANTHER PTHR30012:SF0 3 400 2.7E-95 T 23-04-2016 RPE_RS13350 169eea015925f7411198763c3e00b8e3 400 Pfam PF00482 Type II secretion system (T2SS), protein F 68 190 3.1E-21 T 23-04-2016 IPR018076 Type II secretion system F domain RPE_RS13350 169eea015925f7411198763c3e00b8e3 400 Pfam PF00482 Type II secretion system (T2SS), protein F 270 389 4.9E-21 T 23-04-2016 IPR018076 Type II secretion system F domain RPE_RS13350 169eea015925f7411198763c3e00b8e3 400 PANTHER PTHR30012 3 400 2.7E-95 T 23-04-2016 RPE_RS10385 a89177666bda9b169ad3e4c1ed3728c7 202 PANTHER PTHR20857 6 200 5.9E-47 T 23-04-2016 RPE_RS10385 a89177666bda9b169ad3e4c1ed3728c7 202 Pfam PF02581 Thiamine monophosphate synthase/TENI 13 181 1.4E-50 T 23-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RPE_RS10385 a89177666bda9b169ad3e4c1ed3728c7 202 SUPERFAMILY SSF51391 4 197 4.97E-59 T 23-04-2016 IPR022998 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RPE_RS10385 a89177666bda9b169ad3e4c1ed3728c7 202 Gene3D G3DSA:3.20.20.70 6 198 8.3E-59 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS10385 a89177666bda9b169ad3e4c1ed3728c7 202 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 13 192 1.1E-44 T 23-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 RPE_RS19455 a5cb3eadac7a887b8076be398854598b 278 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 79 236 2.0E-13 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS19455 a5cb3eadac7a887b8076be398854598b 278 PANTHER PTHR30151 7 263 1.1E-31 T 23-04-2016 RPE_RS19455 a5cb3eadac7a887b8076be398854598b 278 Gene3D G3DSA:1.10.3720.10 57 236 4.9E-11 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS19455 a5cb3eadac7a887b8076be398854598b 278 SUPERFAMILY SSF161098 57 236 1.09E-16 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS19455 a5cb3eadac7a887b8076be398854598b 278 PANTHER PTHR30151:SF8 7 263 1.1E-31 T 23-04-2016 RPE_RS13695 76c7c1971104057e1a40d4f8f0573420 337 SUPERFAMILY SSF53850 24 254 5.98E-53 T 23-04-2016 RPE_RS13695 76c7c1971104057e1a40d4f8f0573420 337 PANTHER PTHR30085:SF5 1 306 9.5E-184 T 23-04-2016 RPE_RS13695 76c7c1971104057e1a40d4f8f0573420 337 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 34 251 1.5E-33 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RPE_RS13695 76c7c1971104057e1a40d4f8f0573420 337 PANTHER PTHR30085 1 306 9.5E-184 T 23-04-2016 RPE_RS13695 76c7c1971104057e1a40d4f8f0573420 337 Gene3D G3DSA:3.40.190.10 224 251 5.7E-21 T 23-04-2016 RPE_RS13695 76c7c1971104057e1a40d4f8f0573420 337 Gene3D G3DSA:3.40.190.10 30 124 5.7E-21 T 23-04-2016 RPE_RS13695 76c7c1971104057e1a40d4f8f0573420 337 SMART SM00062 33 261 4.5E-62 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RPE_RS13695 76c7c1971104057e1a40d4f8f0573420 337 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 56 69 - T 23-04-2016 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 RPE_RS13695 76c7c1971104057e1a40d4f8f0573420 337 Gene3D G3DSA:3.40.190.10 125 223 1.4E-14 T 23-04-2016 RPE_RS15535 005149b68ea1b8f03286c79f793c751f 648 Gene3D G3DSA:2.60.40.420 536 643 7.3E-51 T 23-04-2016 IPR008972 Cupredoxin RPE_RS15535 005149b68ea1b8f03286c79f793c751f 648 PANTHER PTHR22888 512 647 4.6E-53 T 23-04-2016 RPE_RS15535 005149b68ea1b8f03286c79f793c751f 648 TIGRFAM TIGR04244 nitrous_NosZ_RR: nitrous-oxide reductase, TAT-dependent 10 644 0.0 T 23-04-2016 IPR023644 Nitrous-oxide reductase GO:0005507|GO:0005509|GO:0050304|GO:0055114 KEGG: 00910+1.7.2.4|MetaCyc: PWY-6748|MetaCyc: PWY-7084|UniPathway: UPA00652 RPE_RS15535 005149b68ea1b8f03286c79f793c751f 648 Pfam PF13473 Cupredoxin-like domain 554 643 1.4E-7 T 23-04-2016 IPR028096 EfeO-type cupredoxin-like domain RPE_RS15535 005149b68ea1b8f03286c79f793c751f 648 Gene3D G3DSA:2.130.10.10 109 526 3.3E-200 T 23-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RPE_RS15535 005149b68ea1b8f03286c79f793c751f 648 SUPERFAMILY SSF49503 517 645 4.8E-38 T 23-04-2016 IPR008972 Cupredoxin RPE_RS15535 005149b68ea1b8f03286c79f793c751f 648 Hamap MF_00716 Nitrous-oxide reductase [nosZ]. 2 645 58.423 T 23-04-2016 IPR023644 Nitrous-oxide reductase GO:0005507|GO:0005509|GO:0050304|GO:0055114 KEGG: 00910+1.7.2.4|MetaCyc: PWY-6748|MetaCyc: PWY-7084|UniPathway: UPA00652 RPE_RS15535 005149b68ea1b8f03286c79f793c751f 648 PANTHER PTHR22888:SF3 512 647 4.6E-53 T 23-04-2016 RPE_RS15535 005149b68ea1b8f03286c79f793c751f 648 SUPERFAMILY SSF50974 64 515 2.22E-142 T 23-04-2016 IPR011045 Nitrous oxide reductase, N-terminal RPE_RS06900 349a6d4692c6c569e01e2440d40b226b 878 SMART SM00448 627 741 1.7E-32 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS06900 349a6d4692c6c569e01e2440d40b226b 878 SUPERFAMILY SSF55874 424 596 7.6E-41 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS06900 349a6d4692c6c569e01e2440d40b226b 878 Pfam PF01627 Hpt domain 787 868 9.9E-10 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS06900 349a6d4692c6c569e01e2440d40b226b 878 Gene3D G3DSA:3.40.50.2300 625 748 2.6E-37 T 23-04-2016 RPE_RS06900 349a6d4692c6c569e01e2440d40b226b 878 Pfam PF08448 PAS fold 251 358 7.1E-10 T 23-04-2016 IPR013656 PAS fold-4 RPE_RS06900 349a6d4692c6c569e01e2440d40b226b 878 SUPERFAMILY SSF55785 250 358 6.28E-12 T 23-04-2016 IPR000014 PAS domain RPE_RS06900 349a6d4692c6c569e01e2440d40b226b 878 SUPERFAMILY SSF47384 359 436 1.37E-20 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS06900 349a6d4692c6c569e01e2440d40b226b 878 PANTHER PTHR24423 35 52 2.2E-152 T 23-04-2016 RPE_RS06900 349a6d4692c6c569e01e2440d40b226b 878 PANTHER PTHR24423 240 750 2.2E-152 T 23-04-2016 RPE_RS06900 349a6d4692c6c569e01e2440d40b226b 878 SUPERFAMILY SSF47226 772 872 7.2E-16 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS06900 349a6d4692c6c569e01e2440d40b226b 878 Pfam PF00512 His Kinase A (phospho-acceptor) domain 370 435 1.5E-19 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS06900 349a6d4692c6c569e01e2440d40b226b 878 Gene3D G3DSA:1.20.120.160 770 872 3.7E-16 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS06900 349a6d4692c6c569e01e2440d40b226b 878 SMART SM00387 482 598 6.4E-31 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS06900 349a6d4692c6c569e01e2440d40b226b 878 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 597 4.9E-24 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS06900 349a6d4692c6c569e01e2440d40b226b 878 SUPERFAMILY SSF52172 625 747 6.83E-36 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS06900 349a6d4692c6c569e01e2440d40b226b 878 Gene3D G3DSA:3.30.450.20 243 356 2.0E-12 T 23-04-2016 RPE_RS06900 349a6d4692c6c569e01e2440d40b226b 878 Gene3D G3DSA:3.30.565.10 422 596 1.8E-41 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS06900 349a6d4692c6c569e01e2440d40b226b 878 Pfam PF00072 Response regulator receiver domain 629 740 7.6E-24 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS06900 349a6d4692c6c569e01e2440d40b226b 878 PRINTS PR00344 Bacterial sensor protein C-terminal signature 523 537 1.5E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS06900 349a6d4692c6c569e01e2440d40b226b 878 PRINTS PR00344 Bacterial sensor protein C-terminal signature 558 576 1.5E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS06900 349a6d4692c6c569e01e2440d40b226b 878 PRINTS PR00344 Bacterial sensor protein C-terminal signature 582 595 1.5E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS06900 349a6d4692c6c569e01e2440d40b226b 878 PANTHER PTHR24423:SF491 35 52 2.2E-152 T 23-04-2016 RPE_RS06900 349a6d4692c6c569e01e2440d40b226b 878 PANTHER PTHR24423:SF491 240 750 2.2E-152 T 23-04-2016 RPE_RS06900 349a6d4692c6c569e01e2440d40b226b 878 Gene3D G3DSA:1.10.287.130 361 421 2.1E-16 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS06900 349a6d4692c6c569e01e2440d40b226b 878 SMART SM00388 370 435 4.0E-25 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS17430 59411726c88bfcb38870ed1fa3457a57 1059 Gene3D G3DSA:3.30.2090.10 189 268 1.0E-10 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS17430 59411726c88bfcb38870ed1fa3457a57 1059 Gene3D G3DSA:3.30.2090.10 708 794 9.7E-17 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS17430 59411726c88bfcb38870ed1fa3457a57 1059 PRINTS PR00702 Acriflavin resistance protein family signature 465 488 1.4E-23 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS17430 59411726c88bfcb38870ed1fa3457a57 1059 PRINTS PR00702 Acriflavin resistance protein family signature 333 356 1.4E-23 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS17430 59411726c88bfcb38870ed1fa3457a57 1059 PRINTS PR00702 Acriflavin resistance protein family signature 387 411 1.4E-23 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS17430 59411726c88bfcb38870ed1fa3457a57 1059 PRINTS PR00702 Acriflavin resistance protein family signature 41 59 1.4E-23 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS17430 59411726c88bfcb38870ed1fa3457a57 1059 PRINTS PR00702 Acriflavin resistance protein family signature 440 463 1.4E-23 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS17430 59411726c88bfcb38870ed1fa3457a57 1059 PRINTS PR00702 Acriflavin resistance protein family signature 541 558 1.4E-23 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS17430 59411726c88bfcb38870ed1fa3457a57 1059 PRINTS PR00702 Acriflavin resistance protein family signature 13 37 1.4E-23 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS17430 59411726c88bfcb38870ed1fa3457a57 1059 SUPERFAMILY SSF82866 792 1014 7.72E-47 T 23-04-2016 RPE_RS17430 59411726c88bfcb38870ed1fa3457a57 1059 PANTHER PTHR32063 3 1056 0.0 T 23-04-2016 RPE_RS17430 59411726c88bfcb38870ed1fa3457a57 1059 SUPERFAMILY SSF82714 708 794 1.7E-17 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS17430 59411726c88bfcb38870ed1fa3457a57 1059 SUPERFAMILY SSF82693 271 325 1.1E-17 T 23-04-2016 RPE_RS17430 59411726c88bfcb38870ed1fa3457a57 1059 PANTHER PTHR32063:SF18 3 1056 0.0 T 23-04-2016 RPE_RS17430 59411726c88bfcb38870ed1fa3457a57 1059 SUPERFAMILY SSF82693 141 185 1.1E-17 T 23-04-2016 RPE_RS17430 59411726c88bfcb38870ed1fa3457a57 1059 Gene3D G3DSA:3.30.70.1430 44 146 1.5E-19 T 23-04-2016 RPE_RS17430 59411726c88bfcb38870ed1fa3457a57 1059 SUPERFAMILY SSF82693 44 137 2.27E-16 T 23-04-2016 RPE_RS17430 59411726c88bfcb38870ed1fa3457a57 1059 SUPERFAMILY SSF82714 188 268 7.19E-11 T 23-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RPE_RS17430 59411726c88bfcb38870ed1fa3457a57 1059 Gene3D G3DSA:1.10.3850.10 277 489 2.8E-40 T 23-04-2016 RPE_RS17430 59411726c88bfcb38870ed1fa3457a57 1059 Gene3D G3DSA:1.10.3850.10 801 1013 3.7E-51 T 23-04-2016 RPE_RS17430 59411726c88bfcb38870ed1fa3457a57 1059 SUPERFAMILY SSF82866 293 489 1.96E-33 T 23-04-2016 RPE_RS17430 59411726c88bfcb38870ed1fa3457a57 1059 Pfam PF00873 AcrB/AcrD/AcrF family 8 1009 1.2E-156 T 23-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RPE_RS07825 1c79679c1154fc7971e8d3eb4c8d3f48 356 PANTHER PTHR30531:SF0 4 351 9.0E-113 T 23-04-2016 RPE_RS07825 1c79679c1154fc7971e8d3eb4c8d3f48 356 Gene3D G3DSA:3.40.1690.10 218 351 2.8E-57 T 23-04-2016 IPR029025 Type III secretion system substrate exporter, C-terminal RPE_RS07825 1c79679c1154fc7971e8d3eb4c8d3f48 356 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 301 322 1.5E-36 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RPE_RS07825 1c79679c1154fc7971e8d3eb4c8d3f48 356 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 272 287 1.5E-36 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RPE_RS07825 1c79679c1154fc7971e8d3eb4c8d3f48 356 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 10 32 1.5E-36 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RPE_RS07825 1c79679c1154fc7971e8d3eb4c8d3f48 356 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 228 245 1.5E-36 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RPE_RS07825 1c79679c1154fc7971e8d3eb4c8d3f48 356 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 208 226 1.5E-36 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RPE_RS07825 1c79679c1154fc7971e8d3eb4c8d3f48 356 SUPERFAMILY SSF160544 245 350 1.31E-38 T 23-04-2016 IPR029025 Type III secretion system substrate exporter, C-terminal RPE_RS07825 1c79679c1154fc7971e8d3eb4c8d3f48 356 Pfam PF01312 FlhB HrpN YscU SpaS Family 7 346 1.1E-120 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RPE_RS07825 1c79679c1154fc7971e8d3eb4c8d3f48 356 PANTHER PTHR30531 4 351 9.0E-113 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RPE_RS07825 1c79679c1154fc7971e8d3eb4c8d3f48 356 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 8 351 5.2E-113 T 23-04-2016 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 RPE_RS13895 d3562bf3d3555d7c87e6a925137a2f88 187 SUPERFAMILY SSF50891 15 181 1.61E-44 T 23-04-2016 IPR029000 Cyclophilin-like domain RPE_RS13895 d3562bf3d3555d7c87e6a925137a2f88 187 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 66 83 - T 23-04-2016 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 RPE_RS13895 d3562bf3d3555d7c87e6a925137a2f88 187 Gene3D G3DSA:2.40.100.10 27 184 1.0E-42 T 23-04-2016 IPR029000 Cyclophilin-like domain RPE_RS13895 d3562bf3d3555d7c87e6a925137a2f88 187 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 34 181 3.2E-41 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RPE_RS13895 d3562bf3d3555d7c87e6a925137a2f88 187 PANTHER PTHR11071 33 163 1.1E-37 T 23-04-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 RPE_RS13895 d3562bf3d3555d7c87e6a925137a2f88 187 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 111 126 1.0E-12 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RPE_RS13895 d3562bf3d3555d7c87e6a925137a2f88 187 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 45 60 1.0E-12 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RPE_RS13895 d3562bf3d3555d7c87e6a925137a2f88 187 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 141 156 1.0E-12 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RPE_RS13895 d3562bf3d3555d7c87e6a925137a2f88 187 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 71 83 1.0E-12 T 23-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 RPE_RS15270 f0de554fe16f75d8924644bcf0a163b9 441 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 8 436 3.0E-104 T 23-04-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 RPE_RS15270 f0de554fe16f75d8924644bcf0a163b9 441 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 8 436 4.5E-164 T 23-04-2016 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 RPE_RS15270 f0de554fe16f75d8924644bcf0a163b9 441 SMART SM00729 138 363 1.2E-47 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RPE_RS15270 f0de554fe16f75d8924644bcf0a163b9 441 Pfam PF04055 Radical SAM superfamily 144 321 9.4E-29 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RPE_RS15270 f0de554fe16f75d8924644bcf0a163b9 441 PANTHER PTHR11918 7 438 6.4E-216 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein RPE_RS15270 f0de554fe16f75d8924644bcf0a163b9 441 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 7 438 58.936 T 23-04-2016 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 RPE_RS15270 f0de554fe16f75d8924644bcf0a163b9 441 SUPERFAMILY SSF102114 119 369 2.22E-47 T 23-04-2016 RPE_RS15270 f0de554fe16f75d8924644bcf0a163b9 441 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 142 162 - T 23-04-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 RPE_RS15270 f0de554fe16f75d8924644bcf0a163b9 441 Gene3D G3DSA:3.80.30.20 136 375 3.7E-69 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RPE_RS15270 f0de554fe16f75d8924644bcf0a163b9 441 Gene3D G3DSA:2.40.50.140 378 438 5.5E-20 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS15270 f0de554fe16f75d8924644bcf0a163b9 441 Pfam PF00919 Uncharacterized protein family UPF0004 8 96 9.8E-21 T 23-04-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 RPE_RS15270 f0de554fe16f75d8924644bcf0a163b9 441 PANTHER PTHR11918:SF57 7 438 6.4E-216 T 23-04-2016 RPE_RS15180 360b676fee24c3b296aa4d12cce85ec5 268 Pfam PF14622 Ribonuclease-III-like 57 185 1.5E-27 T 23-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 RPE_RS15180 360b676fee24c3b296aa4d12cce85ec5 268 SUPERFAMILY SSF54768 153 264 3.93E-26 T 23-04-2016 RPE_RS15180 360b676fee24c3b296aa4d12cce85ec5 268 SUPERFAMILY SSF69065 37 199 3.49E-41 T 23-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 RPE_RS15180 360b676fee24c3b296aa4d12cce85ec5 268 Hamap MF_00104 Ribonuclease 3 [rnc]. 46 260 26.934 T 23-04-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 RPE_RS15180 360b676fee24c3b296aa4d12cce85ec5 268 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 47 262 1.5E-69 T 23-04-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 RPE_RS15180 360b676fee24c3b296aa4d12cce85ec5 268 SMART SM00358 197 264 1.6E-22 T 23-04-2016 IPR014720 Double-stranded RNA-binding domain RPE_RS15180 360b676fee24c3b296aa4d12cce85ec5 268 ProSitePatterns PS00517 Ribonuclease III family signature. 81 89 - T 23-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 RPE_RS15180 360b676fee24c3b296aa4d12cce85ec5 268 SMART SM00535 58 192 3.3E-44 T 23-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 RPE_RS15180 360b676fee24c3b296aa4d12cce85ec5 268 PANTHER PTHR11207 10 262 2.9E-70 T 23-04-2016 RPE_RS15180 360b676fee24c3b296aa4d12cce85ec5 268 Gene3D G3DSA:1.10.1520.10 44 189 1.2E-37 T 23-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 RPE_RS15180 360b676fee24c3b296aa4d12cce85ec5 268 Pfam PF00035 Double-stranded RNA binding motif 197 261 1.8E-15 T 23-04-2016 IPR014720 Double-stranded RNA-binding domain RPE_RS15180 360b676fee24c3b296aa4d12cce85ec5 268 Gene3D G3DSA:3.30.160.20 196 261 1.5E-22 T 23-04-2016 IPR014720 Double-stranded RNA-binding domain RPE_RS19785 bedce0696d79d588ba93b2c3d1b9ff23 137 Gene3D G3DSA:2.170.150.20 9 136 4.0E-62 T 23-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 RPE_RS19785 bedce0696d79d588ba93b2c3d1b9ff23 137 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 13 134 8.2E-57 T 23-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 RPE_RS19785 bedce0696d79d588ba93b2c3d1b9ff23 137 SUPERFAMILY SSF51316 12 136 6.8E-59 T 23-04-2016 IPR011057 Mss4-like RPE_RS19785 bedce0696d79d588ba93b2c3d1b9ff23 137 Pfam PF01641 SelR domain 17 135 5.8E-55 T 23-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 RPE_RS19785 bedce0696d79d588ba93b2c3d1b9ff23 137 PANTHER PTHR10173:SF18 13 137 1.6E-61 T 23-04-2016 RPE_RS19785 bedce0696d79d588ba93b2c3d1b9ff23 137 PANTHER PTHR10173 13 137 1.6E-61 T 23-04-2016 IPR028427 Peptide methionine sulfoxide reductase GO:0006979|GO:0016671|GO:0030091 RPE_RS19785 bedce0696d79d588ba93b2c3d1b9ff23 137 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 14 137 37.277 T 23-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 RPE_RS06665 97ee91f3c30496c2492f72981b5a5c1b 216 Pfam PF13460 NAD(P)H-binding 1 193 3.5E-42 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS06665 97ee91f3c30496c2492f72981b5a5c1b 216 PANTHER PTHR15020 1 202 6.7E-38 T 23-04-2016 RPE_RS06665 97ee91f3c30496c2492f72981b5a5c1b 216 SUPERFAMILY SSF51735 1 205 3.71E-34 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS06665 97ee91f3c30496c2492f72981b5a5c1b 216 Gene3D G3DSA:3.40.50.720 1 205 2.6E-43 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS00990 a9347d1340052ceb04953325d84ae3d1 893 Pfam PF11987 Translation-initiation factor 2 678 783 1.6E-37 T 23-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 RPE_RS00990 a9347d1340052ceb04953325d84ae3d1 893 Gene3D G3DSA:2.40.30.10 563 655 2.2E-24 T 23-04-2016 RPE_RS00990 a9347d1340052ceb04953325d84ae3d1 893 Gene3D G3DSA:2.40.30.10 795 891 4.5E-37 T 23-04-2016 RPE_RS00990 a9347d1340052ceb04953325d84ae3d1 893 Pfam PF00009 Elongation factor Tu GTP binding domain 394 552 3.0E-33 T 23-04-2016 RPE_RS00990 a9347d1340052ceb04953325d84ae3d1 893 SUPERFAMILY SSF52156 676 800 9.81E-37 T 23-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 RPE_RS00990 a9347d1340052ceb04953325d84ae3d1 893 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 314 363 1.8E-11 T 23-04-2016 IPR006847 Translation initiation factor IF-2, N-terminal RPE_RS00990 a9347d1340052ceb04953325d84ae3d1 893 Pfam PF03144 Elongation factor Tu domain 2 814 881 3.5E-7 T 23-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RPE_RS00990 a9347d1340052ceb04953325d84ae3d1 893 ProSitePatterns PS01176 Initiation factor 2 signature. 844 866 - T 23-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 RPE_RS00990 a9347d1340052ceb04953325d84ae3d1 893 SUPERFAMILY SSF50447 795 891 1.89E-31 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain RPE_RS00990 a9347d1340052ceb04953325d84ae3d1 893 SUPERFAMILY SSF50447 564 647 1.19E-25 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain RPE_RS00990 a9347d1340052ceb04953325d84ae3d1 893 Gene3D G3DSA:3.40.50.10050 694 772 6.1E-25 T 23-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 RPE_RS00990 a9347d1340052ceb04953325d84ae3d1 893 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 18 52 1.1E-7 T 23-04-2016 IPR013575 Initiation factor 2 associated domain, bacterial RPE_RS00990 a9347d1340052ceb04953325d84ae3d1 893 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 308 893 1.2E-235 T 23-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 RPE_RS00990 a9347d1340052ceb04953325d84ae3d1 893 PANTHER PTHR23115 374 721 2.7E-204 T 23-04-2016 RPE_RS00990 a9347d1340052ceb04953325d84ae3d1 893 PANTHER PTHR23115 746 893 2.7E-204 T 23-04-2016 RPE_RS00990 a9347d1340052ceb04953325d84ae3d1 893 Gene3D G3DSA:3.40.50.300 382 551 6.4E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS00990 a9347d1340052ceb04953325d84ae3d1 893 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 9 891 16.898 T 23-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 RPE_RS00990 a9347d1340052ceb04953325d84ae3d1 893 PANTHER PTHR23115:SF184 374 721 2.7E-204 T 23-04-2016 RPE_RS00990 a9347d1340052ceb04953325d84ae3d1 893 PANTHER PTHR23115:SF184 746 893 2.7E-204 T 23-04-2016 RPE_RS00990 a9347d1340052ceb04953325d84ae3d1 893 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 392 550 2.8E-33 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RPE_RS00990 a9347d1340052ceb04953325d84ae3d1 893 SUPERFAMILY SSF52540 386 562 7.71E-51 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS06200 57dc262024c233fdf49d537138cf0a18 384 PANTHER PTHR30158:SF3 23 373 1.6E-110 T 23-04-2016 RPE_RS06200 57dc262024c233fdf49d537138cf0a18 384 Gene3D G3DSA:2.40.50.100 59 91 2.8E-18 T 23-04-2016 RPE_RS06200 57dc262024c233fdf49d537138cf0a18 384 Gene3D G3DSA:2.40.50.100 166 197 2.8E-18 T 23-04-2016 RPE_RS06200 57dc262024c233fdf49d537138cf0a18 384 SUPERFAMILY SSF111369 46 273 3.66E-59 T 23-04-2016 RPE_RS06200 57dc262024c233fdf49d537138cf0a18 384 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 37 368 2.2E-71 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RPE_RS06200 57dc262024c233fdf49d537138cf0a18 384 PANTHER PTHR30158 23 373 1.6E-110 T 23-04-2016 RPE_RS06200 57dc262024c233fdf49d537138cf0a18 384 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 50 273 2.4E-9 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RPE_RS01510 bd78a2d14b82c85e3734b6962d661c93 395 Gene3D G3DSA:3.40.50.300 29 209 8.6E-18 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01510 bd78a2d14b82c85e3734b6962d661c93 395 PANTHER PTHR12169 1 380 1.4E-164 T 23-04-2016 IPR005654 ATPase, AFG1-like GO:0005524 RPE_RS01510 bd78a2d14b82c85e3734b6962d661c93 395 Pfam PF03969 AFG1-like ATPase 8 375 1.5E-127 T 23-04-2016 IPR005654 ATPase, AFG1-like GO:0005524 RPE_RS01510 bd78a2d14b82c85e3734b6962d661c93 395 SUPERFAMILY SSF52540 61 212 4.08E-13 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01510 bd78a2d14b82c85e3734b6962d661c93 395 PANTHER PTHR12169:SF11 1 380 1.4E-164 T 23-04-2016 RPE_RS16955 b19a4a26e6fcffb0f41ab77a3984f45a 342 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 146 294 1.7E-20 T 23-04-2016 IPR006342 Methyltransferase FkbM KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- RPE_RS16955 b19a4a26e6fcffb0f41ab77a3984f45a 342 Pfam PF05050 Methyltransferase FkbM domain 148 313 2.6E-8 T 23-04-2016 IPR006342 Methyltransferase FkbM KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- RPE_RS16955 b19a4a26e6fcffb0f41ab77a3984f45a 342 SUPERFAMILY SSF53335 135 294 2.56E-29 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS16955 b19a4a26e6fcffb0f41ab77a3984f45a 342 Gene3D G3DSA:3.40.50.150 140 309 4.8E-25 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS16955 b19a4a26e6fcffb0f41ab77a3984f45a 342 PANTHER PTHR34203 146 293 4.2E-14 T 23-04-2016 RPE_RS12995 b57fc8b02af006f7ff096d0cf8dd06df 339 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 9 333 2.3E-122 T 23-04-2016 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18|UniPathway: UPA00035 RPE_RS12995 b57fc8b02af006f7ff096d0cf8dd06df 339 Gene3D G3DSA:1.20.970.10 6 70 1.9E-26 T 23-04-2016 RPE_RS12995 b57fc8b02af006f7ff096d0cf8dd06df 339 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 6 334 39.216 T 23-04-2016 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18|UniPathway: UPA00035 RPE_RS12995 b57fc8b02af006f7ff096d0cf8dd06df 339 PANTHER PTHR11922:SF5 74 339 4.3E-122 T 23-04-2016 RPE_RS12995 b57fc8b02af006f7ff096d0cf8dd06df 339 PANTHER PTHR11922 74 339 4.3E-122 T 23-04-2016 RPE_RS12995 b57fc8b02af006f7ff096d0cf8dd06df 339 SUPERFAMILY SSF52418 74 336 1.02E-97 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 RPE_RS12995 b57fc8b02af006f7ff096d0cf8dd06df 339 SUPERFAMILY SSF47648 4 69 4.84E-21 T 23-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain RPE_RS12995 b57fc8b02af006f7ff096d0cf8dd06df 339 Gene3D G3DSA:3.40.1030.10 73 336 1.5E-109 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 RPE_RS12995 b57fc8b02af006f7ff096d0cf8dd06df 339 Pfam PF02885 Glycosyl transferase family, helical bundle domain 5 66 1.9E-21 T 23-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain RPE_RS12995 b57fc8b02af006f7ff096d0cf8dd06df 339 Pfam PF00591 Glycosyl transferase family, a/b domain 75 324 1.2E-97 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 RPE_RS14520 9aeea68b68f3ed9cc2befe7013f85167 1021 Gene3D G3DSA:1.20.1580.10 106 144 1.1E-50 T 23-04-2016 RPE_RS14520 9aeea68b68f3ed9cc2befe7013f85167 1021 Gene3D G3DSA:1.20.1580.10 312 345 1.1E-50 T 23-04-2016 RPE_RS14520 9aeea68b68f3ed9cc2befe7013f85167 1021 Gene3D G3DSA:1.20.1580.10 468 540 1.1E-50 T 23-04-2016 RPE_RS14520 9aeea68b68f3ed9cc2befe7013f85167 1021 Hamap MF_00205 UvrABC system protein A [uvrA]. 16 1001 22.677 T 23-04-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 RPE_RS14520 9aeea68b68f3ed9cc2befe7013f85167 1021 Gene3D G3DSA:1.10.8.280 348 467 7.4E-44 T 23-04-2016 RPE_RS14520 9aeea68b68f3ed9cc2befe7013f85167 1021 Gene3D G3DSA:1.20.1580.10 755 881 2.8E-52 T 23-04-2016 RPE_RS14520 9aeea68b68f3ed9cc2befe7013f85167 1021 Pfam PF00005 ABC transporter 852 921 3.9E-6 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS14520 9aeea68b68f3ed9cc2befe7013f85167 1021 PANTHER PTHR32282 304 1004 0.0 T 23-04-2016 RPE_RS14520 9aeea68b68f3ed9cc2befe7013f85167 1021 PANTHER PTHR32282 16 255 0.0 T 23-04-2016 RPE_RS14520 9aeea68b68f3ed9cc2befe7013f85167 1021 SUPERFAMILY SSF52540 683 972 5.45E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14520 9aeea68b68f3ed9cc2befe7013f85167 1021 SUPERFAMILY SSF52540 19 219 7.59E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14520 9aeea68b68f3ed9cc2befe7013f85167 1021 SUPERFAMILY SSF52540 498 632 7.59E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14520 9aeea68b68f3ed9cc2befe7013f85167 1021 PANTHER PTHR32282:SF2 304 1004 0.0 T 23-04-2016 RPE_RS14520 9aeea68b68f3ed9cc2befe7013f85167 1021 PANTHER PTHR32282:SF2 16 255 0.0 T 23-04-2016 RPE_RS14520 9aeea68b68f3ed9cc2befe7013f85167 1021 Gene3D G3DSA:3.40.50.300 666 730 1.4E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14520 9aeea68b68f3ed9cc2befe7013f85167 1021 Gene3D G3DSA:3.40.50.300 14 66 1.6E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14520 9aeea68b68f3ed9cc2befe7013f85167 1021 Gene3D G3DSA:3.40.50.300 541 658 1.6E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14520 9aeea68b68f3ed9cc2befe7013f85167 1021 Gene3D G3DSA:3.40.50.300 882 1004 1.4E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14520 9aeea68b68f3ed9cc2befe7013f85167 1021 ProSitePatterns PS00211 ABC transporters family signature. 891 905 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS14520 9aeea68b68f3ed9cc2befe7013f85167 1021 ProSitePatterns PS00211 ABC transporters family signature. 550 564 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS14520 9aeea68b68f3ed9cc2befe7013f85167 1021 Gene3D G3DSA:3.30.1490.20 145 168 2.4E-28 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RPE_RS14520 9aeea68b68f3ed9cc2befe7013f85167 1021 Gene3D G3DSA:3.30.1490.20 215 255 2.4E-28 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RPE_RS14520 9aeea68b68f3ed9cc2befe7013f85167 1021 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 19 985 0.0 T 23-04-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 RPE_RS24440 100f7a698bb231815ac98774e5edd9f8 332 SUPERFAMILY SSF161098 44 317 3.01E-32 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS24440 100f7a698bb231815ac98774e5edd9f8 332 PANTHER PTHR30425:SF1 1 332 8.0E-158 T 23-04-2016 RPE_RS24440 100f7a698bb231815ac98774e5edd9f8 332 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 30 325 7.2E-93 T 23-04-2016 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 RPE_RS24440 100f7a698bb231815ac98774e5edd9f8 332 PANTHER PTHR30425 1 332 8.0E-158 T 23-04-2016 RPE_RS24440 100f7a698bb231815ac98774e5edd9f8 332 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 109 320 1.2E-13 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS24440 100f7a698bb231815ac98774e5edd9f8 332 Gene3D G3DSA:1.10.3720.10 39 329 3.0E-36 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS06605 2679c42ac336fd7121d7e3b0d1687651 411 SMART SM00086 224 265 0.019 T 23-04-2016 IPR001610 PAC motif RPE_RS06605 2679c42ac336fd7121d7e3b0d1687651 411 SMART SM00086 104 146 76.0 T 23-04-2016 IPR001610 PAC motif RPE_RS06605 2679c42ac336fd7121d7e3b0d1687651 411 SUPERFAMILY SSF55785 163 264 2.79E-12 T 23-04-2016 IPR000014 PAS domain RPE_RS06605 2679c42ac336fd7121d7e3b0d1687651 411 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 32 136 1.3E-11 T 23-04-2016 IPR000014 PAS domain RPE_RS06605 2679c42ac336fd7121d7e3b0d1687651 411 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 202 267 7.1E-6 T 23-04-2016 IPR000014 PAS domain RPE_RS06605 2679c42ac336fd7121d7e3b0d1687651 411 SUPERFAMILY SSF46689 277 326 2.69E-7 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS06605 2679c42ac336fd7121d7e3b0d1687651 411 SMART SM00342 292 377 1.4E-21 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RPE_RS06605 2679c42ac336fd7121d7e3b0d1687651 411 Gene3D G3DSA:1.10.10.60 273 329 4.3E-13 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS06605 2679c42ac336fd7121d7e3b0d1687651 411 SUPERFAMILY SSF46689 329 380 1.21E-5 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS06605 2679c42ac336fd7121d7e3b0d1687651 411 SMART SM00091 28 97 1.3E-7 T 23-04-2016 IPR000014 PAS domain RPE_RS06605 2679c42ac336fd7121d7e3b0d1687651 411 SMART SM00091 151 219 310.0 T 23-04-2016 IPR000014 PAS domain RPE_RS06605 2679c42ac336fd7121d7e3b0d1687651 411 Pfam PF12833 Helix-turn-helix domain 298 379 1.6E-24 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RPE_RS06605 2679c42ac336fd7121d7e3b0d1687651 411 Gene3D G3DSA:1.10.10.60 330 376 1.6E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS06605 2679c42ac336fd7121d7e3b0d1687651 411 Pfam PF08447 PAS fold 176 256 3.2E-10 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 RPE_RS06605 2679c42ac336fd7121d7e3b0d1687651 411 Pfam PF08447 PAS fold 52 140 3.7E-12 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 RPE_RS06605 2679c42ac336fd7121d7e3b0d1687651 411 Gene3D G3DSA:3.30.450.20 30 139 8.1E-17 T 23-04-2016 RPE_RS06605 2679c42ac336fd7121d7e3b0d1687651 411 Gene3D G3DSA:3.30.450.20 163 263 2.1E-12 T 23-04-2016 RPE_RS06605 2679c42ac336fd7121d7e3b0d1687651 411 SUPERFAMILY SSF55785 39 139 1.08E-15 T 23-04-2016 IPR000014 PAS domain RPE_RS06605 2679c42ac336fd7121d7e3b0d1687651 411 PANTHER PTHR11019 278 385 3.4E-24 T 23-04-2016 RPE_RS23105 47aef7c1c680aefb9b7debe772ab905c 567 TIGRFAM TIGR00680 kdpA: K+-transporting ATPase, A subunit 1 560 9.8E-233 T 23-04-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 RPE_RS23105 47aef7c1c680aefb9b7debe772ab905c 567 PANTHER PTHR30607 2 565 0.0 T 23-04-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 RPE_RS23105 47aef7c1c680aefb9b7debe772ab905c 567 Pfam PF03814 Potassium-transporting ATPase A subunit 11 559 6.3E-244 T 23-04-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 RPE_RS23105 47aef7c1c680aefb9b7debe772ab905c 567 Hamap MF_00275 Potassium-transporting ATPase potassium-binding subunit [kdpA]. 2 561 35.792 T 23-04-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 RPE_RS23105 47aef7c1c680aefb9b7debe772ab905c 567 PIRSF PIRSF001294 1 563 1.0E-241 T 23-04-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 RPE_RS22930 ac103040c5665b15ea6923df86313edf 201 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 173 6.1E-34 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RPE_RS22930 ac103040c5665b15ea6923df86313edf 201 Gene3D G3DSA:3.40.50.1240 1 187 2.3E-39 T 23-04-2016 IPR029033 Histidine phosphatase superfamily RPE_RS22930 ac103040c5665b15ea6923df86313edf 201 SUPERFAMILY SSF53254 1 184 1.41E-40 T 23-04-2016 IPR029033 Histidine phosphatase superfamily RPE_RS22930 ac103040c5665b15ea6923df86313edf 201 SMART SM00855 3 163 5.2E-21 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RPE_RS22930 ac103040c5665b15ea6923df86313edf 201 PANTHER PTHR23029:SF1 1 135 3.3E-32 T 23-04-2016 RPE_RS22930 ac103040c5665b15ea6923df86313edf 201 PANTHER PTHR23029 1 135 3.3E-32 T 23-04-2016 RPE_RS07150 0ec007c6dd159ab9e3d64708a8fe5fd3 603 Pfam PF08676 MutL C terminal dimerisation domain 413 560 1.0E-47 T 23-04-2016 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 RPE_RS07150 0ec007c6dd159ab9e3d64708a8fe5fd3 603 PANTHER PTHR10073 3 603 2.4E-151 T 23-04-2016 RPE_RS07150 0ec007c6dd159ab9e3d64708a8fe5fd3 603 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 92 98 - T 23-04-2016 IPR014762 DNA mismatch repair, conserved site RPE_RS07150 0ec007c6dd159ab9e3d64708a8fe5fd3 603 SUPERFAMILY SSF118116 413 602 3.66E-60 T 23-04-2016 RPE_RS07150 0ec007c6dd159ab9e3d64708a8fe5fd3 603 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 1 600 27.586 T 23-04-2016 IPR020667 DNA mismatch repair protein, MutL GO:0006298 RPE_RS07150 0ec007c6dd159ab9e3d64708a8fe5fd3 603 SMART SM01340 211 329 2.5E-54 T 23-04-2016 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 RPE_RS07150 0ec007c6dd159ab9e3d64708a8fe5fd3 603 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 2 309 4.5E-90 T 23-04-2016 IPR002099 DNA mismatch repair protein family GO:0005524|GO:0006298|GO:0030983 RPE_RS07150 0ec007c6dd159ab9e3d64708a8fe5fd3 603 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 24 121 6.9E-11 T 23-04-2016 RPE_RS07150 0ec007c6dd159ab9e3d64708a8fe5fd3 603 Gene3D G3DSA:3.30.565.10 2 198 3.7E-67 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS07150 0ec007c6dd159ab9e3d64708a8fe5fd3 603 SMART SM00853 417 560 4.5E-54 T 23-04-2016 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 RPE_RS07150 0ec007c6dd159ab9e3d64708a8fe5fd3 603 SUPERFAMILY SSF55874 2 197 7.73E-49 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS07150 0ec007c6dd159ab9e3d64708a8fe5fd3 603 Gene3D G3DSA:3.30.230.10 216 326 6.6E-34 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RPE_RS07150 0ec007c6dd159ab9e3d64708a8fe5fd3 603 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 212 328 2.1E-34 T 23-04-2016 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 RPE_RS07150 0ec007c6dd159ab9e3d64708a8fe5fd3 603 SUPERFAMILY SSF54211 200 328 7.97E-33 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RPE_RS23255 86011c9d802e972eed24af9691402328 109 Gene3D G3DSA:1.10.10.10 5 99 3.8E-35 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS23255 86011c9d802e972eed24af9691402328 109 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 19 34 1.2E-11 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RPE_RS23255 86011c9d802e972eed24af9691402328 109 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 51 66 1.2E-11 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RPE_RS23255 86011c9d802e972eed24af9691402328 109 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 66 81 1.2E-11 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RPE_RS23255 86011c9d802e972eed24af9691402328 109 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 38 49 1.2E-11 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RPE_RS23255 86011c9d802e972eed24af9691402328 109 PANTHER PTHR33154 3 107 2.1E-32 T 23-04-2016 RPE_RS23255 86011c9d802e972eed24af9691402328 109 SUPERFAMILY SSF46785 4 98 5.01E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS23255 86011c9d802e972eed24af9691402328 109 PANTHER PTHR33154:SF9 3 107 2.1E-32 T 23-04-2016 RPE_RS23255 86011c9d802e972eed24af9691402328 109 Pfam PF01022 Bacterial regulatory protein, arsR family 27 68 4.3E-15 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RPE_RS23255 86011c9d802e972eed24af9691402328 109 SMART SM00418 17 95 4.7E-26 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RPE_RS04590 ec9ac852440785e673d46e79eb62b2dd 317 PANTHER PTHR11935 1 238 1.8E-77 T 23-04-2016 RPE_RS04590 ec9ac852440785e673d46e79eb62b2dd 317 PANTHER PTHR11935:SF5 1 238 1.8E-77 T 23-04-2016 RPE_RS04590 ec9ac852440785e673d46e79eb62b2dd 317 SUPERFAMILY SSF56281 15 307 3.36E-54 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS04590 ec9ac852440785e673d46e79eb62b2dd 317 Gene3D G3DSA:3.60.15.10 12 243 4.3E-49 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS04590 ec9ac852440785e673d46e79eb62b2dd 317 Pfam PF00753 Metallo-beta-lactamase superfamily 33 185 1.3E-10 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS04590 ec9ac852440785e673d46e79eb62b2dd 317 SMART SM00849 34 219 7.2E-13 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS17565 d49418ac94fb78870159d1e4986a486c 251 Gene3D G3DSA:3.40.630.30 66 209 2.1E-14 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS17565 d49418ac94fb78870159d1e4986a486c 251 Pfam PF00583 Acetyltransferase (GNAT) family 144 205 9.3E-7 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RPE_RS17565 d49418ac94fb78870159d1e4986a486c 251 SUPERFAMILY SSF55729 42 207 9.41E-18 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS10530 ff0863d0dd2f077bea7a468a3a3898a3 267 PANTHER PTHR30417 1 251 1.1E-73 T 23-04-2016 RPE_RS10530 ff0863d0dd2f077bea7a468a3a3898a3 267 SUPERFAMILY SSF55846 12 170 2.62E-52 T 23-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RPE_RS10530 ff0863d0dd2f077bea7a468a3a3898a3 267 Gene3D G3DSA:3.40.80.10 13 171 3.9E-54 T 23-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RPE_RS10530 ff0863d0dd2f077bea7a468a3a3898a3 267 SUPERFAMILY SSF47090 186 247 8.44E-18 T 23-04-2016 IPR002477 Peptidoglycan binding-like RPE_RS10530 ff0863d0dd2f077bea7a468a3a3898a3 267 SMART SM00644 17 154 3.1E-33 T 23-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RPE_RS10530 ff0863d0dd2f077bea7a468a3a3898a3 267 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 27 154 2.2E-22 T 23-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RPE_RS10530 ff0863d0dd2f077bea7a468a3a3898a3 267 Gene3D G3DSA:1.10.101.10 178 244 8.3E-14 T 23-04-2016 IPR002477 Peptidoglycan binding-like RPE_RS10530 ff0863d0dd2f077bea7a468a3a3898a3 267 Pfam PF01471 Putative peptidoglycan binding domain 188 243 5.0E-15 T 23-04-2016 IPR002477 Peptidoglycan binding-like RPE_RS08740 00d420a592db966956b393257ade8959 382 Gene3D G3DSA:3.30.750.24 15 96 4.4E-6 T 23-04-2016 IPR002645 STAS domain RPE_RS08740 00d420a592db966956b393257ade8959 382 SUPERFAMILY SSF52091 17 100 2.94E-10 T 23-04-2016 IPR002645 STAS domain RPE_RS08740 00d420a592db966956b393257ade8959 382 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 143 377 4.1E-68 T 23-04-2016 IPR003453 ABC transport permease subunit MlaE, Proteobacteria RPE_RS08740 00d420a592db966956b393257ade8959 382 PANTHER PTHR30188:SF3 43 381 2.5E-154 T 23-04-2016 RPE_RS08740 00d420a592db966956b393257ade8959 382 PANTHER PTHR30188 43 381 2.5E-154 T 23-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 RPE_RS08740 00d420a592db966956b393257ade8959 382 Pfam PF13466 STAS domain 28 100 3.4E-7 T 23-04-2016 IPR002645 STAS domain RPE_RS08740 00d420a592db966956b393257ade8959 382 Pfam PF02405 Permease MlaE 166 375 6.2E-70 T 23-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 RPE_RS02535 dada2e206bd736054e311c20aa654b56 328 PANTHER PTHR12126:SF1 1 317 1.8E-102 T 23-04-2016 RPE_RS02535 dada2e206bd736054e311c20aa654b56 328 SUPERFAMILY SSF51735 6 303 3.82E-50 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS02535 dada2e206bd736054e311c20aa654b56 328 PANTHER PTHR12126 1 317 1.8E-102 T 23-04-2016 RPE_RS02535 dada2e206bd736054e311c20aa654b56 328 Gene3D G3DSA:3.40.50.720 7 231 1.9E-50 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS02535 dada2e206bd736054e311c20aa654b56 328 Pfam PF01370 NAD dependent epimerase/dehydratase family 9 215 2.5E-16 T 23-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 RPE_RS23940 0e5dc102ba035d05d73cfd6ab05b08bb 253 Pfam PF00005 ABC transporter 21 163 8.8E-23 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS23940 0e5dc102ba035d05d73cfd6ab05b08bb 253 PANTHER PTHR24220 6 229 7.4E-59 T 23-04-2016 RPE_RS23940 0e5dc102ba035d05d73cfd6ab05b08bb 253 SUPERFAMILY SSF52540 5 221 1.05E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS23940 0e5dc102ba035d05d73cfd6ab05b08bb 253 PANTHER PTHR24220:SF581 6 229 7.4E-59 T 23-04-2016 RPE_RS23940 0e5dc102ba035d05d73cfd6ab05b08bb 253 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS23940 0e5dc102ba035d05d73cfd6ab05b08bb 253 SMART SM00382 29 207 1.7E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS23940 0e5dc102ba035d05d73cfd6ab05b08bb 253 Gene3D G3DSA:3.40.50.300 4 235 1.7E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS17925 fe67631d51269260ace01953dfe41e73 68 PANTHER PTHR10916:SF0 1 67 3.9E-23 T 23-04-2016 RPE_RS17925 fe67631d51269260ace01953dfe41e73 68 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 4 63 17.451 T 23-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17925 fe67631d51269260ace01953dfe41e73 68 TIGRFAM TIGR00012 L29: ribosomal protein uL29 8 63 2.2E-20 T 23-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17925 fe67631d51269260ace01953dfe41e73 68 Gene3D G3DSA:1.10.287.310 4 64 1.1E-25 T 23-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17925 fe67631d51269260ace01953dfe41e73 68 SUPERFAMILY SSF46561 4 64 1.31E-20 T 23-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17925 fe67631d51269260ace01953dfe41e73 68 Pfam PF00831 Ribosomal L29 protein 8 63 2.5E-22 T 23-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17925 fe67631d51269260ace01953dfe41e73 68 ProSitePatterns PS00579 Ribosomal protein L29 signature. 42 56 - T 23-04-2016 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17925 fe67631d51269260ace01953dfe41e73 68 PANTHER PTHR10916 1 67 3.9E-23 T 23-04-2016 RPE_RS00640 00797438c0fabea737f1c10b09b24fbd 1116 SUPERFAMILY SSF52540 155 406 1.2E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS00640 00797438c0fabea737f1c10b09b24fbd 1116 Pfam PF00271 Helicase conserved C-terminal domain 174 278 1.1E-9 T 23-04-2016 IPR001650 Helicase, C-terminal RPE_RS00640 00797438c0fabea737f1c10b09b24fbd 1116 PANTHER PTHR12131:SF4 24 303 2.7E-140 T 23-04-2016 RPE_RS00640 00797438c0fabea737f1c10b09b24fbd 1116 SUPERFAMILY SSF52540 21 144 1.46E-11 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS00640 00797438c0fabea737f1c10b09b24fbd 1116 PANTHER PTHR12131 24 303 2.7E-140 T 23-04-2016 RPE_RS00640 00797438c0fabea737f1c10b09b24fbd 1116 SMART SM00490 190 279 1.9E-14 T 23-04-2016 IPR001650 Helicase, C-terminal RPE_RS00640 00797438c0fabea737f1c10b09b24fbd 1116 Gene3D G3DSA:3.40.50.300 23 128 5.8E-6 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS00640 00797438c0fabea737f1c10b09b24fbd 1116 Gene3D G3DSA:3.40.50.300 175 283 6.1E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18555 c6907379e20930db75d587032a711df7 150 Gene3D G3DSA:3.40.1260.10 35 150 3.2E-29 T 23-04-2016 IPR027396 DsrEFH-like RPE_RS18555 c6907379e20930db75d587032a711df7 150 Pfam PF02635 DsrE/DsrF-like family 46 150 4.7E-9 T 23-04-2016 IPR003787 Sulphur relay, DsrE/F-like protein RPE_RS18555 c6907379e20930db75d587032a711df7 150 SUPERFAMILY SSF75169 36 150 7.06E-19 T 23-04-2016 IPR027396 DsrEFH-like RPE_RS18555 c6907379e20930db75d587032a711df7 150 PANTHER PTHR37691 1 150 3.5E-29 T 23-04-2016 RPE_RS18555 c6907379e20930db75d587032a711df7 150 PANTHER PTHR37691:SF1 1 150 3.5E-29 T 23-04-2016 RPE_RS08440 6d4c53441f5dbfda009069eeea88c14a 496 PANTHER PTHR33908:SF1 3 495 6.1E-141 T 23-04-2016 RPE_RS08440 6d4c53441f5dbfda009069eeea88c14a 496 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 50 211 5.2E-39 T 23-04-2016 RPE_RS08440 6d4c53441f5dbfda009069eeea88c14a 496 PANTHER PTHR33908 3 495 6.1E-141 T 23-04-2016 RPE_RS03360 dbfa0ac82ef73e1a62a46eb3e603beb3 596 PANTHER PTHR10909 1 478 9.3E-227 T 23-04-2016 RPE_RS03360 dbfa0ac82ef73e1a62a46eb3e603beb3 596 Gene3D G3DSA:1.10.540.10 38 160 6.3E-19 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS03360 dbfa0ac82ef73e1a62a46eb3e603beb3 596 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 163 272 2.2E-16 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RPE_RS03360 dbfa0ac82ef73e1a62a46eb3e603beb3 596 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 3 34 6.2E-10 T 23-04-2016 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria RPE_RS03360 dbfa0ac82ef73e1a62a46eb3e603beb3 596 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 282 451 3.3E-14 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS03360 dbfa0ac82ef73e1a62a46eb3e603beb3 596 SUPERFAMILY SSF47203 288 474 3.06E-45 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS03360 dbfa0ac82ef73e1a62a46eb3e603beb3 596 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 467 592 2.4E-35 T 23-04-2016 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain RPE_RS03360 dbfa0ac82ef73e1a62a46eb3e603beb3 596 Gene3D G3DSA:2.40.110.10 162 268 4.6E-25 T 23-04-2016 RPE_RS03360 dbfa0ac82ef73e1a62a46eb3e603beb3 596 SUPERFAMILY SSF56645 39 280 2.62E-58 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RPE_RS03360 dbfa0ac82ef73e1a62a46eb3e603beb3 596 PANTHER PTHR10909:SF154 1 478 9.3E-227 T 23-04-2016 RPE_RS03360 dbfa0ac82ef73e1a62a46eb3e603beb3 596 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 39 158 1.6E-14 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS03360 dbfa0ac82ef73e1a62a46eb3e603beb3 596 Gene3D G3DSA:1.20.140.10 269 457 1.1E-45 T 23-04-2016 RPE_RS04280 633e6d15e7fdf3f11ec9c87b6ec1954b 312 SUPERFAMILY SSF56281 9 285 1.33E-60 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS04280 633e6d15e7fdf3f11ec9c87b6ec1954b 312 Gene3D G3DSA:3.60.15.10 30 268 1.0E-52 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS04280 633e6d15e7fdf3f11ec9c87b6ec1954b 312 PANTHER PTHR11935 13 276 1.9E-65 T 23-04-2016 RPE_RS04280 633e6d15e7fdf3f11ec9c87b6ec1954b 312 PANTHER PTHR11935:SF95 13 276 1.9E-65 T 23-04-2016 RPE_RS04280 633e6d15e7fdf3f11ec9c87b6ec1954b 312 SMART SM00849 59 243 1.5E-22 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS04280 633e6d15e7fdf3f11ec9c87b6ec1954b 312 Pfam PF00753 Metallo-beta-lactamase superfamily 60 243 5.4E-23 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS04280 633e6d15e7fdf3f11ec9c87b6ec1954b 312 TIGRFAM TIGR04559 SoxH_rel_PQQ_2: quinoprotein relay system zinc metallohydrolase 2 32 312 4.2E-121 T 23-04-2016 IPR030829 Quinoprotein relay system zinc metallohydrolase 2 RPE_RS13995 f4e7f75397e437cb84d2f1fe887b32df 609 SUPERFAMILY SSF53697 245 609 8.11E-111 T 23-04-2016 RPE_RS13995 f4e7f75397e437cb84d2f1fe887b32df 609 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 609 6.9E-240 T 23-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 RPE_RS13995 f4e7f75397e437cb84d2f1fe887b32df 609 Gene3D G3DSA:3.60.20.10 2 233 7.7E-76 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RPE_RS13995 f4e7f75397e437cb84d2f1fe887b32df 609 Gene3D G3DSA:3.40.50.10490 442 609 5.7E-65 T 23-04-2016 RPE_RS13995 f4e7f75397e437cb84d2f1fe887b32df 609 Pfam PF13522 Glutamine amidotransferase domain 61 193 2.0E-23 T 23-04-2016 RPE_RS13995 f4e7f75397e437cb84d2f1fe887b32df 609 PANTHER PTHR10937 1 609 0.0 T 23-04-2016 RPE_RS13995 f4e7f75397e437cb84d2f1fe887b32df 609 Pfam PF01380 SIS domain 289 417 8.9E-30 T 23-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 RPE_RS13995 f4e7f75397e437cb84d2f1fe887b32df 609 Pfam PF01380 SIS domain 461 592 1.7E-28 T 23-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 RPE_RS13995 f4e7f75397e437cb84d2f1fe887b32df 609 Gene3D G3DSA:3.40.50.10490 245 441 9.1E-58 T 23-04-2016 RPE_RS13995 f4e7f75397e437cb84d2f1fe887b32df 609 PANTHER PTHR10937:SF0 1 609 0.0 T 23-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 RPE_RS13995 f4e7f75397e437cb84d2f1fe887b32df 609 SUPERFAMILY SSF56235 2 232 1.97E-73 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RPE_RS13995 f4e7f75397e437cb84d2f1fe887b32df 609 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 609 39.077 T 23-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 RPE_RS17800 c80ad17e56837e64f047d832696d843c 139 PANTHER PTHR30615 1 139 3.2E-88 T 23-04-2016 RPE_RS17800 c80ad17e56837e64f047d832696d843c 139 PANTHER PTHR30615:SF2 1 139 3.2E-88 T 23-04-2016 RPE_RS17800 c80ad17e56837e64f047d832696d843c 139 PIRSF PIRSF004681 1 139 1.9E-41 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 RPE_RS17800 c80ad17e56837e64f047d832696d843c 139 TIGRFAM TIGR00149 TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme 8 139 1.9E-33 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 RPE_RS17800 c80ad17e56837e64f047d832696d843c 139 SUPERFAMILY SSF111038 1 139 2.35E-47 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 RPE_RS17800 c80ad17e56837e64f047d832696d843c 139 Gene3D G3DSA:2.60.120.460 1 139 5.5E-48 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 RPE_RS17800 c80ad17e56837e64f047d832696d843c 139 Pfam PF01894 Uncharacterised protein family UPF0047 20 136 2.4E-34 T 23-04-2016 IPR001602 Uncharacterised protein family UPF0047 RPE_RS08610 50b58c0cb53cfeb1c03973b2fe991af6 205 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 23 162 9.8E-64 T 23-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 RPE_RS08610 50b58c0cb53cfeb1c03973b2fe991af6 205 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 129 145 - T 23-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 RPE_RS08610 50b58c0cb53cfeb1c03973b2fe991af6 205 Gene3D G3DSA:3.40.50.700 33 159 1.9E-31 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 RPE_RS08610 50b58c0cb53cfeb1c03973b2fe991af6 205 PANTHER PTHR11995 6 201 1.7E-91 T 23-04-2016 RPE_RS08610 50b58c0cb53cfeb1c03973b2fe991af6 205 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 70 155 3.2E-22 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 RPE_RS08610 50b58c0cb53cfeb1c03973b2fe991af6 205 PANTHER PTHR11995:SF14 6 201 1.7E-91 T 23-04-2016 RPE_RS08610 50b58c0cb53cfeb1c03973b2fe991af6 205 SUPERFAMILY SSF56770 23 164 1.96E-61 T 23-04-2016 RPE_RS08610 50b58c0cb53cfeb1c03973b2fe991af6 205 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 8 162 40.087 T 23-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 RPE_RS03755 6e6bcff4798e172a3e48510ba7e4a44a 129 Pfam PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit 27 113 7.8E-38 T 23-04-2016 IPR011986 Extradiol ring-cleavage dioxygenase LigAB, LigA subunit RPE_RS03755 6e6bcff4798e172a3e48510ba7e4a44a 129 TIGRFAM TIGR02792 PCA_ligA: protocatechuate 4,5-dioxygenase, alpha subunit 7 123 1.9E-65 T 23-04-2016 IPR014159 Protocatechuate 4,5-dioxygenase, alpha subunit KEGG: 00362+1.13.11.8|KEGG: 00624+1.13.11.8|KEGG: 00627+1.13.11.8|MetaCyc: PWY-6216|MetaCyc: PWY-6217 RPE_RS03755 6e6bcff4798e172a3e48510ba7e4a44a 129 SUPERFAMILY SSF48076 3 127 2.48E-51 T 23-04-2016 IPR011986 Extradiol ring-cleavage dioxygenase LigAB, LigA subunit RPE_RS03755 6e6bcff4798e172a3e48510ba7e4a44a 129 Gene3D G3DSA:1.10.700.10 2 128 1.0E-58 T 23-04-2016 IPR011986 Extradiol ring-cleavage dioxygenase LigAB, LigA subunit RPE_RS08125 13b82e181edc23c0aba824cca5817e24 388 PANTHER PTHR36927 1 388 3.8E-42 T 23-04-2016 RPE_RS08125 13b82e181edc23c0aba824cca5817e24 388 Pfam PF01757 Acyltransferase family 18 373 2.5E-34 T 23-04-2016 IPR002656 Acyltransferase 3 GO:0016747 RPE_RS09955 ed32334523721c9dd46c4874167f3979 198 PANTHER PTHR35011 2 166 5.1E-45 T 23-04-2016 RPE_RS09955 ed32334523721c9dd46c4874167f3979 198 PANTHER PTHR35011:SF4 2 166 5.1E-45 T 23-04-2016 RPE_RS09955 ed32334523721c9dd46c4874167f3979 198 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 30 161 1.6E-23 T 23-04-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component RPE_RS02135 8815d6f50a0e349f62086b9fd8fcdab0 540 SMART SM00382 26 235 1.0E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS02135 8815d6f50a0e349f62086b9fd8fcdab0 540 SMART SM00382 349 516 2.2E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS02135 8815d6f50a0e349f62086b9fd8fcdab0 540 Pfam PF00005 ABC transporter 341 471 3.0E-21 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS02135 8815d6f50a0e349f62086b9fd8fcdab0 540 Pfam PF00005 ABC transporter 21 190 1.2E-23 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS02135 8815d6f50a0e349f62086b9fd8fcdab0 540 Pfam PF12848 ABC transporter 229 312 2.4E-25 T 23-04-2016 IPR032781 ABC-transporter extension domain RPE_RS02135 8815d6f50a0e349f62086b9fd8fcdab0 540 SUPERFAMILY SSF52540 2 240 1.32E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02135 8815d6f50a0e349f62086b9fd8fcdab0 540 SUPERFAMILY SSF52540 305 524 6.02E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02135 8815d6f50a0e349f62086b9fd8fcdab0 540 Gene3D G3DSA:3.40.50.300 323 530 1.8E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02135 8815d6f50a0e349f62086b9fd8fcdab0 540 Gene3D G3DSA:3.40.50.300 1 89 1.3E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02135 8815d6f50a0e349f62086b9fd8fcdab0 540 Gene3D G3DSA:3.40.50.300 123 276 1.3E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02135 8815d6f50a0e349f62086b9fd8fcdab0 540 PANTHER PTHR19211 1 530 0.0 T 23-04-2016 RPE_RS02135 8815d6f50a0e349f62086b9fd8fcdab0 540 PANTHER PTHR19211:SF51 1 530 0.0 T 23-04-2016 RPE_RS02135 8815d6f50a0e349f62086b9fd8fcdab0 540 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS02135 8815d6f50a0e349f62086b9fd8fcdab0 540 ProSitePatterns PS00211 ABC transporters family signature. 443 457 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS10935 a15e4581a686ef716584a7bacd18b74c 66 PANTHER PTHR38602:SF1 1 66 3.6E-13 T 23-04-2016 RPE_RS10935 a15e4581a686ef716584a7bacd18b74c 66 Pfam PF09838 Uncharacterized protein conserved in bacteria (DUF2065) 9 64 1.8E-17 T 23-04-2016 IPR019201 Protein of unknown function DUF2065 RPE_RS10935 a15e4581a686ef716584a7bacd18b74c 66 PANTHER PTHR38602 1 66 3.6E-13 T 23-04-2016 RPE_RS24540 bca1455ca0f5f9f3684afb09939ced80 390 SUPERFAMILY SSF53850 54 339 1.4E-38 T 23-04-2016 RPE_RS24540 bca1455ca0f5f9f3684afb09939ced80 390 Gene3D G3DSA:3.40.190.10 268 339 7.9E-8 T 23-04-2016 RPE_RS24540 bca1455ca0f5f9f3684afb09939ced80 390 Gene3D G3DSA:3.40.190.10 55 133 7.9E-8 T 23-04-2016 RPE_RS24540 bca1455ca0f5f9f3684afb09939ced80 390 PANTHER PTHR30024:SF5 52 383 1.8E-35 T 23-04-2016 RPE_RS24540 bca1455ca0f5f9f3684afb09939ced80 390 Gene3D G3DSA:3.40.190.10 140 267 3.7E-21 T 23-04-2016 RPE_RS24540 bca1455ca0f5f9f3684afb09939ced80 390 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 15 279 1.1E-30 T 23-04-2016 IPR011852 TRAP transporter solute receptor, TAXI family RPE_RS24540 bca1455ca0f5f9f3684afb09939ced80 390 PANTHER PTHR30024 52 383 1.8E-35 T 23-04-2016 RPE_RS24540 bca1455ca0f5f9f3684afb09939ced80 390 Pfam PF16868 NMT1-like family 60 339 3.2E-23 T 23-04-2016 IPR011852 TRAP transporter solute receptor, TAXI family RPE_RS18290 8f89408f47dcc78692f865aa1f0a5d37 232 Gene3D G3DSA:2.60.120.10 18 135 2.0E-26 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS18290 8f89408f47dcc78692f865aa1f0a5d37 232 Pfam PF00027 Cyclic nucleotide-binding domain 26 112 1.1E-18 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RPE_RS18290 8f89408f47dcc78692f865aa1f0a5d37 232 PANTHER PTHR24567:SF37 9 203 2.0E-60 T 23-04-2016 RPE_RS18290 8f89408f47dcc78692f865aa1f0a5d37 232 SMART SM00419 161 208 8.1E-5 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RPE_RS18290 8f89408f47dcc78692f865aa1f0a5d37 232 SUPERFAMILY SSF51206 12 140 4.06E-31 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like RPE_RS18290 8f89408f47dcc78692f865aa1f0a5d37 232 SUPERFAMILY SSF46785 143 205 1.78E-10 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS18290 8f89408f47dcc78692f865aa1f0a5d37 232 SMART SM00100 5 124 1.8E-16 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RPE_RS18290 8f89408f47dcc78692f865aa1f0a5d37 232 Pfam PF13545 Crp-like helix-turn-helix domain 145 208 3.1E-13 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RPE_RS18290 8f89408f47dcc78692f865aa1f0a5d37 232 PANTHER PTHR24567 9 203 2.0E-60 T 23-04-2016 RPE_RS18290 8f89408f47dcc78692f865aa1f0a5d37 232 Gene3D G3DSA:1.10.10.10 143 206 4.5E-14 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS07735 453677543fb22c7c33e34c88836f1b24 254 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 23-04-2016 IPR019776 Flagellar basal body rod protein, conserved site RPE_RS07735 453677543fb22c7c33e34c88836f1b24 254 Pfam PF00460 Flagella basal body rod protein 8 35 1.5E-9 T 23-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RPE_RS07735 453677543fb22c7c33e34c88836f1b24 254 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 7 127 2.6E-44 T 23-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G RPE_RS07735 453677543fb22c7c33e34c88836f1b24 254 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 138 229 3.7E-20 T 23-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G RPE_RS07735 453677543fb22c7c33e34c88836f1b24 254 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 176 246 2.5E-18 T 23-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RPE_RS07735 453677543fb22c7c33e34c88836f1b24 254 PANTHER PTHR30435 1 250 2.0E-76 T 23-04-2016 RPE_RS07735 453677543fb22c7c33e34c88836f1b24 254 PANTHER PTHR30435:SF18 1 250 2.0E-76 T 23-04-2016 RPE_RS07735 453677543fb22c7c33e34c88836f1b24 254 SUPERFAMILY SSF117143 84 210 1.2E-25 T 23-04-2016 RPE_RS07735 453677543fb22c7c33e34c88836f1b24 254 TIGRFAM TIGR02490 flgF: flagellar basal-body rod protein FlgF 7 228 1.8E-65 T 23-04-2016 IPR012836 Flagellar basal-body rod FlgF GO:0030694|GO:0071973 RPE_RS17575 8ba570d6d17ac1525400814d5061f47c 424 Pfam PF13439 Glycosyltransferase Family 4 18 199 2.8E-15 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RPE_RS17575 8ba570d6d17ac1525400814d5061f47c 424 Pfam PF13692 Glycosyl transferases group 1 227 362 3.7E-27 T 23-04-2016 RPE_RS17575 8ba570d6d17ac1525400814d5061f47c 424 PANTHER PTHR12526 7 398 2.1E-46 T 23-04-2016 RPE_RS17575 8ba570d6d17ac1525400814d5061f47c 424 SUPERFAMILY SSF53756 4 397 3.05E-67 T 23-04-2016 RPE_RS17575 8ba570d6d17ac1525400814d5061f47c 424 Gene3D G3DSA:3.40.50.2000 192 374 6.4E-26 T 23-04-2016 RPE_RS22180 ff88fd89d2c7b96d9a5b64933c387df9 330 Pfam PF09243 Mitochondrial small ribosomal subunit Rsm22 50 321 9.8E-75 T 23-04-2016 IPR015324 Ribosomal protein Rsm22, bacterial-type GO:0006412|GO:0008168 KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- RPE_RS22180 ff88fd89d2c7b96d9a5b64933c387df9 330 PANTHER PTHR21320:SF0 48 326 8.7E-46 T 23-04-2016 RPE_RS22180 ff88fd89d2c7b96d9a5b64933c387df9 330 PANTHER PTHR21320 48 326 8.7E-46 T 23-04-2016 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 RPE_RS22180 ff88fd89d2c7b96d9a5b64933c387df9 330 SUPERFAMILY SSF53335 71 194 1.56E-11 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS22180 ff88fd89d2c7b96d9a5b64933c387df9 330 Gene3D G3DSA:3.40.50.150 72 176 3.0E-8 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS01860 88a1a6f9c8235996dcb14be7a17a8210 190 Pfam PF00227 Proteasome subunit 17 187 5.4E-22 T 23-04-2016 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: REACT_11045|Reactome: REACT_13|Reactome: REACT_13635|Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_383|Reactome: REACT_578|Reactome: REACT_6185|Reactome: REACT_6850 RPE_RS01860 88a1a6f9c8235996dcb14be7a17a8210 190 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 18 188 40.555 T 23-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 RPE_RS01860 88a1a6f9c8235996dcb14be7a17a8210 190 SUPERFAMILY SSF56235 15 188 1.85E-60 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RPE_RS01860 88a1a6f9c8235996dcb14be7a17a8210 190 Gene3D G3DSA:3.60.20.10 19 188 1.7E-84 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RPE_RS01860 88a1a6f9c8235996dcb14be7a17a8210 190 PIRSF PIRSF039093 13 190 7.1E-85 T 23-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 RPE_RS01860 88a1a6f9c8235996dcb14be7a17a8210 190 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 19 188 1.0E-83 T 23-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 RPE_RS01860 88a1a6f9c8235996dcb14be7a17a8210 190 PANTHER PTHR32194 1 188 1.5E-124 T 23-04-2016 RPE_RS04190 5dd2511e514383b82e10719709b9ec94 93 Gene3D G3DSA:4.10.490.10 38 93 2.5E-17 T 23-04-2016 IPR000170 High potential iron-sulphur protein GO:0009055|GO:0019646 RPE_RS04190 5dd2511e514383b82e10719709b9ec94 93 SUPERFAMILY SSF57652 33 93 4.97E-13 T 23-04-2016 IPR000170 High potential iron-sulphur protein GO:0009055|GO:0019646 RPE_RS17940 a72fc1ab740f9558c6d84eaca984ec0f 128 PANTHER PTHR13501 3 126 1.4E-44 T 23-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 RPE_RS17940 a72fc1ab740f9558c6d84eaca984ec0f 128 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 13 122 25.146 T 23-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 RPE_RS17940 a72fc1ab740f9558c6d84eaca984ec0f 128 Pfam PF00237 Ribosomal protein L22p/L17e 20 119 1.7E-29 T 23-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 RPE_RS17940 a72fc1ab740f9558c6d84eaca984ec0f 128 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 17 119 1.4E-32 T 23-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 RPE_RS17940 a72fc1ab740f9558c6d84eaca984ec0f 128 SUPERFAMILY SSF54843 6 123 1.03E-40 T 23-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 RPE_RS17940 a72fc1ab740f9558c6d84eaca984ec0f 128 Gene3D G3DSA:3.90.470.10 14 123 2.8E-40 T 23-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 RPE_RS09715 27103003cb6cd0c6ed5e6e0bcd0da6ac 660 PANTHER PTHR30009:SF0 1 417 4.8E-288 T 23-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS09715 27103003cb6cd0c6ed5e6e0bcd0da6ac 660 PANTHER PTHR30009:SF0 472 658 4.8E-288 T 23-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS09715 27103003cb6cd0c6ed5e6e0bcd0da6ac 660 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 315 640 6.7E-117 T 23-04-2016 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal RPE_RS09715 27103003cb6cd0c6ed5e6e0bcd0da6ac 660 Pfam PF01578 Cytochrome C assembly protein 89 295 6.6E-51 T 23-04-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 RPE_RS09715 27103003cb6cd0c6ed5e6e0bcd0da6ac 660 PANTHER PTHR30009 1 417 4.8E-288 T 23-04-2016 RPE_RS09715 27103003cb6cd0c6ed5e6e0bcd0da6ac 660 PANTHER PTHR30009 472 658 4.8E-288 T 23-04-2016 RPE_RS09715 27103003cb6cd0c6ed5e6e0bcd0da6ac 660 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 53 643 4.4E-189 T 23-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS09715 27103003cb6cd0c6ed5e6e0bcd0da6ac 660 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 394 413 1.9E-65 T 23-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS09715 27103003cb6cd0c6ed5e6e0bcd0da6ac 660 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 1.9E-65 T 23-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS09715 27103003cb6cd0c6ed5e6e0bcd0da6ac 660 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 313 328 1.9E-65 T 23-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS09715 27103003cb6cd0c6ed5e6e0bcd0da6ac 660 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 633 646 1.9E-65 T 23-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS09715 27103003cb6cd0c6ed5e6e0bcd0da6ac 660 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 189 204 1.9E-65 T 23-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS09715 27103003cb6cd0c6ed5e6e0bcd0da6ac 660 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 351 368 1.9E-65 T 23-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS09715 27103003cb6cd0c6ed5e6e0bcd0da6ac 660 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 1.9E-65 T 23-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS09715 27103003cb6cd0c6ed5e6e0bcd0da6ac 660 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 294 310 2.9E-96 T 23-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS09715 27103003cb6cd0c6ed5e6e0bcd0da6ac 660 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 2.9E-96 T 23-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS09715 27103003cb6cd0c6ed5e6e0bcd0da6ac 660 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 274 294 2.9E-96 T 23-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS09715 27103003cb6cd0c6ed5e6e0bcd0da6ac 660 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 310 329 2.9E-96 T 23-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS09715 27103003cb6cd0c6ed5e6e0bcd0da6ac 660 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 244 264 2.9E-96 T 23-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS09715 27103003cb6cd0c6ed5e6e0bcd0da6ac 660 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 2.9E-96 T 23-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS09715 27103003cb6cd0c6ed5e6e0bcd0da6ac 660 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 159 181 2.9E-96 T 23-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS09715 27103003cb6cd0c6ed5e6e0bcd0da6ac 660 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 210 236 2.9E-96 T 23-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS15630 4e527033663f59ed36387ab7a696a406 302 TIGRFAM TIGR03431 PhnD: phosphonate ABC transporter, periplasmic phosphonate binding protein 5 295 8.6E-111 T 23-04-2016 IPR017797 Phosphonate ABC transporter, periplasmic substrate-binding protein GO:0015604|GO:0015716|GO:0043190 RPE_RS15630 4e527033663f59ed36387ab7a696a406 302 PANTHER PTHR35841:SF2 7 302 2.7E-68 T 23-04-2016 RPE_RS15630 4e527033663f59ed36387ab7a696a406 302 Gene3D G3DSA:3.40.190.10 121 256 1.5E-12 T 23-04-2016 RPE_RS15630 4e527033663f59ed36387ab7a696a406 302 PANTHER PTHR35841 7 302 2.7E-68 T 23-04-2016 RPE_RS15630 4e527033663f59ed36387ab7a696a406 302 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 7 256 5.7E-84 T 23-04-2016 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 RPE_RS15630 4e527033663f59ed36387ab7a696a406 302 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 35 269 2.1E-62 T 23-04-2016 RPE_RS15630 4e527033663f59ed36387ab7a696a406 302 SUPERFAMILY SSF53850 48 297 1.0E-54 T 23-04-2016 RPE_RS01435 362424fb588d3b9f827d1ee63cb4c371 732 SMART SM00490 497 594 4.1E-5 T 23-04-2016 IPR001650 Helicase, C-terminal RPE_RS01435 362424fb588d3b9f827d1ee63cb4c371 732 SMART SM00487 196 394 5.8E-20 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RPE_RS01435 362424fb588d3b9f827d1ee63cb4c371 732 Hamap MF_00983 Probable primosomal protein N' [priA]. 17 731 23.322 T 23-04-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 RPE_RS01435 362424fb588d3b9f827d1ee63cb4c371 732 TIGRFAM TIGR00595 priA: primosomal protein N' 223 728 3.6E-180 T 23-04-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 RPE_RS01435 362424fb588d3b9f827d1ee63cb4c371 732 SUPERFAMILY SSF52540 500 628 1.37E-25 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01435 362424fb588d3b9f827d1ee63cb4c371 732 SUPERFAMILY SSF52540 223 272 1.37E-25 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01435 362424fb588d3b9f827d1ee63cb4c371 732 PANTHER PTHR30580 5 732 2.1E-235 T 23-04-2016 RPE_RS01435 362424fb588d3b9f827d1ee63cb4c371 732 SUPERFAMILY SSF52540 197 376 1.16E-33 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01435 362424fb588d3b9f827d1ee63cb4c371 732 Gene3D G3DSA:3.40.50.300 200 383 2.5E-33 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01435 362424fb588d3b9f827d1ee63cb4c371 732 Pfam PF00270 DEAD/DEAH box helicase 220 362 9.4E-12 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RPE_RS01435 362424fb588d3b9f827d1ee63cb4c371 732 Pfam PF00271 Helicase conserved C-terminal domain 527 592 2.8E-5 T 23-04-2016 IPR001650 Helicase, C-terminal RPE_RS01435 362424fb588d3b9f827d1ee63cb4c371 732 Gene3D G3DSA:3.40.50.300 458 638 2.3E-24 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01435 362424fb588d3b9f827d1ee63cb4c371 732 SUPERFAMILY SSF161219 438 485 4.18E-5 T 23-04-2016 RPE_RS15230 e1f355c98d3c545f345636f4091b5d2d 296 Gene3D G3DSA:3.20.20.70 5 295 8.6E-121 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS15230 e1f355c98d3c545f345636f4091b5d2d 296 Pfam PF00701 Dihydrodipicolinate synthetase family 7 287 5.5E-95 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RPE_RS15230 e1f355c98d3c545f345636f4091b5d2d 296 PIRSF PIRSF001365 3 296 7.7E-96 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RPE_RS15230 e1f355c98d3c545f345636f4091b5d2d 296 PANTHER PTHR12128:SF34 7 296 4.8E-129 T 23-04-2016 RPE_RS15230 e1f355c98d3c545f345636f4091b5d2d 296 SUPERFAMILY SSF51569 7 293 4.92E-106 T 23-04-2016 RPE_RS15230 e1f355c98d3c545f345636f4091b5d2d 296 PRINTS PR00146 Dihydrodipicolinate synthase signature 75 93 9.9E-35 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RPE_RS15230 e1f355c98d3c545f345636f4091b5d2d 296 PRINTS PR00146 Dihydrodipicolinate synthase signature 107 123 9.9E-35 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RPE_RS15230 e1f355c98d3c545f345636f4091b5d2d 296 PRINTS PR00146 Dihydrodipicolinate synthase signature 39 60 9.9E-35 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RPE_RS15230 e1f355c98d3c545f345636f4091b5d2d 296 PRINTS PR00146 Dihydrodipicolinate synthase signature 132 149 9.9E-35 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RPE_RS15230 e1f355c98d3c545f345636f4091b5d2d 296 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 42 59 - T 23-04-2016 IPR020624 Schiff base-forming aldolase, conserved site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RPE_RS15230 e1f355c98d3c545f345636f4091b5d2d 296 SMART SM01130 6 293 1.0E-143 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RPE_RS15230 e1f355c98d3c545f345636f4091b5d2d 296 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 10 288 7.0E-98 T 23-04-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RPE_RS15230 e1f355c98d3c545f345636f4091b5d2d 296 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 137 167 - T 23-04-2016 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RPE_RS15230 e1f355c98d3c545f345636f4091b5d2d 296 PANTHER PTHR12128 7 296 4.8E-129 T 23-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RPE_RS15230 e1f355c98d3c545f345636f4091b5d2d 296 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 6 291 63.509 T 23-04-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RPE_RS15995 364a7a64935231f9c63ea055beae260c 318 SMART SM00062 32 247 4.9E-7 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RPE_RS15995 364a7a64935231f9c63ea055beae260c 318 Pfam PF09084 NMT1/THI5 like 56 235 1.1E-17 T 23-04-2016 IPR015168 SsuA/THI5-like RPE_RS15995 364a7a64935231f9c63ea055beae260c 318 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 33 313 4.8E-68 T 23-04-2016 IPR010067 Aliphatic sulfonates-binding protein GO:0006790|GO:0006810|GO:0016020 RPE_RS15995 364a7a64935231f9c63ea055beae260c 318 SUPERFAMILY SSF53850 31 261 4.35E-50 T 23-04-2016 RPE_RS15995 364a7a64935231f9c63ea055beae260c 318 Gene3D G3DSA:3.40.190.10 132 233 2.1E-28 T 23-04-2016 RPE_RS15995 364a7a64935231f9c63ea055beae260c 318 Gene3D G3DSA:3.40.190.10 56 131 3.9E-4 T 23-04-2016 RPE_RS15995 364a7a64935231f9c63ea055beae260c 318 PANTHER PTHR30024:SF11 1 314 3.2E-123 T 23-04-2016 RPE_RS15995 364a7a64935231f9c63ea055beae260c 318 PANTHER PTHR30024 1 314 3.2E-123 T 23-04-2016 RPE_RS20845 301361d9d985e43430962be7a244f8f1 90 Gene3D G3DSA:1.10.260.40 7 67 2.6E-9 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS20845 301361d9d985e43430962be7a244f8f1 90 SUPERFAMILY SSF47413 6 66 1.28E-8 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS20845 301361d9d985e43430962be7a244f8f1 90 SMART SM00530 6 63 1.1E-5 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RPE_RS20845 301361d9d985e43430962be7a244f8f1 90 Pfam PF13560 Helix-turn-helix domain 7 54 5.6E-8 T 23-04-2016 RPE_RS21235 8b246e676cb166464c37c97024127ebf 181 PANTHER PTHR12526 1 165 5.2E-27 T 23-04-2016 RPE_RS21235 8b246e676cb166464c37c97024127ebf 181 Gene3D G3DSA:3.40.50.2000 2 140 1.3E-17 T 23-04-2016 RPE_RS21235 8b246e676cb166464c37c97024127ebf 181 Pfam PF00534 Glycosyl transferases group 1 1 139 2.1E-24 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 RPE_RS21235 8b246e676cb166464c37c97024127ebf 181 SUPERFAMILY SSF53756 1 162 9.42E-40 T 23-04-2016 RPE_RS02450 abfd49b39ba71a2a2190213c2e72ce20 251 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 6 217 8.1E-25 T 23-04-2016 RPE_RS14125 bf96da7530a13a7454d73af04a23140d 202 Pfam PF00677 Lumazine binding domain 3 92 2.4E-17 T 23-04-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RPE_RS14125 bf96da7530a13a7454d73af04a23140d 202 Pfam PF00677 Lumazine binding domain 105 189 2.1E-18 T 23-04-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RPE_RS14125 bf96da7530a13a7454d73af04a23140d 202 SUPERFAMILY SSF63380 1 98 1.36E-19 T 23-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 RPE_RS14125 bf96da7530a13a7454d73af04a23140d 202 Gene3D G3DSA:2.40.30.20 5 109 1.8E-24 T 23-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RPE_RS14125 bf96da7530a13a7454d73af04a23140d 202 Gene3D G3DSA:2.40.30.20 110 200 7.8E-28 T 23-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RPE_RS14125 bf96da7530a13a7454d73af04a23140d 202 PIRSF PIRSF000498 1 202 6.7E-63 T 23-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RPE_RS14125 bf96da7530a13a7454d73af04a23140d 202 SUPERFAMILY SSF63380 98 199 5.44E-30 T 23-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 RPE_RS14125 bf96da7530a13a7454d73af04a23140d 202 PANTHER PTHR21098 1 198 5.4E-78 T 23-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RPE_RS01285 35af1e83ac456089dfdcc84fc4dbf121 281 PIRSF PIRSF000094 2 261 2.2E-113 T 23-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RPE_RS01285 35af1e83ac456089dfdcc84fc4dbf121 281 PANTHER PTHR24322 160 192 1.6E-55 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS01285 35af1e83ac456089dfdcc84fc4dbf121 281 PANTHER PTHR24322 12 144 1.6E-55 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS01285 35af1e83ac456089dfdcc84fc4dbf121 281 SUPERFAMILY SSF51735 6 255 4.17E-66 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS01285 35af1e83ac456089dfdcc84fc4dbf121 281 PANTHER PTHR24322:SF317 160 192 1.6E-55 T 23-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RPE_RS01285 35af1e83ac456089dfdcc84fc4dbf121 281 PANTHER PTHR24322:SF317 12 144 1.6E-55 T 23-04-2016 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RPE_RS01285 35af1e83ac456089dfdcc84fc4dbf121 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 1.4E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS01285 35af1e83ac456089dfdcc84fc4dbf121 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 1.4E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS01285 35af1e83ac456089dfdcc84fc4dbf121 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 1.4E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS01285 35af1e83ac456089dfdcc84fc4dbf121 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 1.4E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS01285 35af1e83ac456089dfdcc84fc4dbf121 281 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 1.4E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS01285 35af1e83ac456089dfdcc84fc4dbf121 281 Gene3D G3DSA:3.40.50.720 7 202 1.1E-67 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS01285 35af1e83ac456089dfdcc84fc4dbf121 281 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 253 4.6E-85 T 23-04-2016 RPE_RS14915 c857330898ea59ac3f855d9ca6899fdd 390 Gene3D G3DSA:3.90.1150.10 246 370 4.9E-38 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS14915 c857330898ea59ac3f855d9ca6899fdd 390 Gene3D G3DSA:3.40.640.10 20 245 1.0E-63 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS14915 c857330898ea59ac3f855d9ca6899fdd 390 Pfam PF00266 Aminotransferase class-V 6 363 1.7E-63 T 23-04-2016 IPR000192 Aminotransferase class V domain RPE_RS14915 c857330898ea59ac3f855d9ca6899fdd 390 PANTHER PTHR11601 1 363 1.8E-122 T 23-04-2016 RPE_RS14915 c857330898ea59ac3f855d9ca6899fdd 390 PIRSF PIRSF005572 3 379 1.5E-124 T 23-04-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 RPE_RS14915 c857330898ea59ac3f855d9ca6899fdd 390 SUPERFAMILY SSF53383 5 370 1.6E-87 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS14915 c857330898ea59ac3f855d9ca6899fdd 390 PANTHER PTHR11601:SF20 1 363 1.8E-122 T 23-04-2016 RPE_RS22420 0849d2f20c8f02ee4df9a611e53c2278 274 SUPERFAMILY SSF53474 2 273 3.05E-65 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS22420 0849d2f20c8f02ee4df9a611e53c2278 274 Pfam PF00561 alpha/beta hydrolase fold 22 254 2.5E-21 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS22420 0849d2f20c8f02ee4df9a611e53c2278 274 PRINTS PR00111 Alpha/beta hydrolase fold signature 47 62 2.8E-9 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS22420 0849d2f20c8f02ee4df9a611e53c2278 274 PRINTS PR00111 Alpha/beta hydrolase fold signature 91 104 2.8E-9 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS22420 0849d2f20c8f02ee4df9a611e53c2278 274 PRINTS PR00111 Alpha/beta hydrolase fold signature 217 231 2.8E-9 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS22420 0849d2f20c8f02ee4df9a611e53c2278 274 Gene3D G3DSA:3.40.50.1820 6 273 1.8E-71 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS22420 0849d2f20c8f02ee4df9a611e53c2278 274 PANTHER PTHR10992 2 274 2.0E-128 T 23-04-2016 RPE_RS22420 0849d2f20c8f02ee4df9a611e53c2278 274 PANTHER PTHR10992:SF859 2 274 2.0E-128 T 23-04-2016 RPE_RS09245 c69ccb9bd1ed8b7a80a6b356d1428596 259 Gene3D G3DSA:3.90.226.10 2 255 1.2E-94 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS09245 c69ccb9bd1ed8b7a80a6b356d1428596 259 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 256 1.1E-78 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RPE_RS09245 c69ccb9bd1ed8b7a80a6b356d1428596 259 PANTHER PTHR11941 1 256 1.1E-117 T 23-04-2016 RPE_RS09245 c69ccb9bd1ed8b7a80a6b356d1428596 259 PANTHER PTHR11941:SF54 1 256 1.1E-117 T 23-04-2016 RPE_RS09245 c69ccb9bd1ed8b7a80a6b356d1428596 259 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 100 120 - T 23-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 RPE_RS09245 c69ccb9bd1ed8b7a80a6b356d1428596 259 SUPERFAMILY SSF52096 2 258 1.31E-87 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS18460 d2143f5207b70483c04725b1ba7348bc 356 Pfam PF00005 ABC transporter 19 161 1.1E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS18460 d2143f5207b70483c04725b1ba7348bc 356 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS18460 d2143f5207b70483c04725b1ba7348bc 356 PANTHER PTHR24220 5 309 7.7E-162 T 23-04-2016 RPE_RS18460 d2143f5207b70483c04725b1ba7348bc 356 SUPERFAMILY SSF50331 236 354 1.77E-29 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RPE_RS18460 d2143f5207b70483c04725b1ba7348bc 356 PANTHER PTHR24220:SF151 5 309 7.7E-162 T 23-04-2016 RPE_RS18460 d2143f5207b70483c04725b1ba7348bc 356 SMART SM00382 28 212 2.6E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS18460 d2143f5207b70483c04725b1ba7348bc 356 SUPERFAMILY SSF52540 4 242 1.73E-84 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18460 d2143f5207b70483c04725b1ba7348bc 356 Gene3D G3DSA:2.40.50.100 239 283 4.2E-8 T 23-04-2016 RPE_RS18460 d2143f5207b70483c04725b1ba7348bc 356 Gene3D G3DSA:2.40.50.100 340 354 4.2E-8 T 23-04-2016 RPE_RS18460 d2143f5207b70483c04725b1ba7348bc 356 Pfam PF08402 TOBE domain 280 346 7.5E-11 T 23-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 RPE_RS18460 d2143f5207b70483c04725b1ba7348bc 356 Gene3D G3DSA:3.40.50.300 4 234 1.7E-75 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18460 d2143f5207b70483c04725b1ba7348bc 356 Gene3D G3DSA:2.40.50.140 284 338 1.3E-12 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS15200 24bd19c5b9f329b60a3dd50eee83dc17 759 SUPERFAMILY SSF109604 38 223 4.87E-70 T 23-04-2016 RPE_RS15200 24bd19c5b9f329b60a3dd50eee83dc17 759 Pfam PF13291 ACT domain 680 756 5.3E-17 T 23-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 RPE_RS15200 24bd19c5b9f329b60a3dd50eee83dc17 759 SUPERFAMILY SSF55021 684 757 3.4E-11 T 23-04-2016 RPE_RS15200 24bd19c5b9f329b60a3dd50eee83dc17 759 PANTHER PTHR21262:SF0 7 759 0.0 T 23-04-2016 RPE_RS15200 24bd19c5b9f329b60a3dd50eee83dc17 759 SMART SM00471 74 186 1.2E-11 T 23-04-2016 IPR003607 HD/PDEase domain RPE_RS15200 24bd19c5b9f329b60a3dd50eee83dc17 759 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 59 755 1.0E-194 T 23-04-2016 IPR004811 RelA/SpoT family GO:0015969 RPE_RS15200 24bd19c5b9f329b60a3dd50eee83dc17 759 SUPERFAMILY SSF81271 411 483 4.36E-18 T 23-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 RPE_RS15200 24bd19c5b9f329b60a3dd50eee83dc17 759 SUPERFAMILY SSF81301 214 428 7.36E-59 T 23-04-2016 RPE_RS15200 24bd19c5b9f329b60a3dd50eee83dc17 759 PANTHER PTHR21262 7 759 0.0 T 23-04-2016 RPE_RS15200 24bd19c5b9f329b60a3dd50eee83dc17 759 Pfam PF13328 HD domain 59 208 6.0E-50 T 23-04-2016 IPR003607 HD/PDEase domain RPE_RS15200 24bd19c5b9f329b60a3dd50eee83dc17 759 Gene3D G3DSA:3.30.70.260 682 747 1.7E-11 T 23-04-2016 RPE_RS15200 24bd19c5b9f329b60a3dd50eee83dc17 759 Gene3D G3DSA:3.10.20.30 423 482 8.1E-19 T 23-04-2016 IPR012675 Beta-grasp domain RPE_RS15200 24bd19c5b9f329b60a3dd50eee83dc17 759 Gene3D G3DSA:3.30.460.10 225 358 2.5E-45 T 23-04-2016 RPE_RS15200 24bd19c5b9f329b60a3dd50eee83dc17 759 Pfam PF02824 TGS domain 425 482 1.0E-16 T 23-04-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 RPE_RS15200 24bd19c5b9f329b60a3dd50eee83dc17 759 Pfam PF04607 Region found in RelA / SpoT proteins 268 377 1.2E-34 T 23-04-2016 IPR007685 RelA/SpoT GO:0015969 RPE_RS15200 24bd19c5b9f329b60a3dd50eee83dc17 759 SMART SM00954 268 378 7.1E-58 T 23-04-2016 IPR007685 RelA/SpoT GO:0015969 RPE_RS06995 c124fffb3f322fb9646d4a9b7ca9e070 254 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS06995 c124fffb3f322fb9646d4a9b7ca9e070 254 PANTHER PTHR24220:SF491 5 248 1.5E-115 T 23-04-2016 RPE_RS06995 c124fffb3f322fb9646d4a9b7ca9e070 254 PANTHER PTHR24220 5 248 1.5E-115 T 23-04-2016 RPE_RS06995 c124fffb3f322fb9646d4a9b7ca9e070 254 SMART SM00382 28 224 1.4E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS06995 c124fffb3f322fb9646d4a9b7ca9e070 254 Gene3D G3DSA:3.40.50.300 3 247 7.0E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS06995 c124fffb3f322fb9646d4a9b7ca9e070 254 SUPERFAMILY SSF52540 3 245 6.23E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS06995 c124fffb3f322fb9646d4a9b7ca9e070 254 Pfam PF00005 ABC transporter 20 175 1.3E-27 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS06995 c124fffb3f322fb9646d4a9b7ca9e070 254 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 224 246 1.0E-6 T 23-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RPE_RS01365 561bf2d5c4e464254366e57d89d7268f 457 PANTHER PTHR32060 59 381 5.3E-118 T 23-04-2016 RPE_RS01365 561bf2d5c4e464254366e57d89d7268f 457 SMART SM00228 104 175 2.5E-13 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS01365 561bf2d5c4e464254366e57d89d7268f 457 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 56 373 2.8E-105 T 23-04-2016 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 RPE_RS01365 561bf2d5c4e464254366e57d89d7268f 457 Gene3D G3DSA:3.90.226.10 187 373 1.5E-71 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS01365 561bf2d5c4e464254366e57d89d7268f 457 Gene3D G3DSA:3.90.226.10 407 427 1.5E-71 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS01365 561bf2d5c4e464254366e57d89d7268f 457 Gene3D G3DSA:2.30.42.10 110 186 5.7E-28 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS01365 561bf2d5c4e464254366e57d89d7268f 457 Pfam PF13180 PDZ domain 104 184 8.1E-13 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS01365 561bf2d5c4e464254366e57d89d7268f 457 Gene3D G3DSA:3.30.750.44 48 109 2.4E-9 T 23-04-2016 RPE_RS01365 561bf2d5c4e464254366e57d89d7268f 457 Pfam PF03572 Peptidase family S41 202 370 5.4E-58 T 23-04-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 RPE_RS01365 561bf2d5c4e464254366e57d89d7268f 457 SUPERFAMILY SSF50156 92 187 2.29E-19 T 23-04-2016 IPR001478 PDZ domain GO:0005515 RPE_RS01365 561bf2d5c4e464254366e57d89d7268f 457 SUPERFAMILY SSF52096 41 122 2.98E-85 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS01365 561bf2d5c4e464254366e57d89d7268f 457 SUPERFAMILY SSF52096 196 383 2.98E-85 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS01365 561bf2d5c4e464254366e57d89d7268f 457 SMART SM00245 177 371 1.2E-80 T 23-04-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 RPE_RS05840 6f21f2c64634337c9c2a1e4f66a050d5 132 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 50 123 7.1E-23 T 23-04-2016 IPR001543 Surface presentation of antigen (SpoA) RPE_RS05840 6f21f2c64634337c9c2a1e4f66a050d5 132 PRINTS PR00956 Flagellar motor switch protein FliN signature 67 83 1.6E-20 T 23-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RPE_RS05840 6f21f2c64634337c9c2a1e4f66a050d5 132 PRINTS PR00956 Flagellar motor switch protein FliN signature 96 111 1.6E-20 T 23-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RPE_RS05840 6f21f2c64634337c9c2a1e4f66a050d5 132 PRINTS PR00956 Flagellar motor switch protein FliN signature 83 96 1.6E-20 T 23-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RPE_RS05840 6f21f2c64634337c9c2a1e4f66a050d5 132 PRINTS PR00956 Flagellar motor switch protein FliN signature 50 66 1.6E-20 T 23-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RPE_RS05840 6f21f2c64634337c9c2a1e4f66a050d5 132 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 48 123 1.4E-25 T 23-04-2016 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 RPE_RS05840 6f21f2c64634337c9c2a1e4f66a050d5 132 PANTHER PTHR41277 35 130 1.1E-26 T 23-04-2016 RPE_RS05840 6f21f2c64634337c9c2a1e4f66a050d5 132 SUPERFAMILY SSF101801 48 126 1.31E-19 T 23-04-2016 IPR001543 Surface presentation of antigen (SpoA) RPE_RS05840 6f21f2c64634337c9c2a1e4f66a050d5 132 Gene3D G3DSA:2.30.330.10 41 125 1.3E-27 T 23-04-2016 RPE_RS05840 6f21f2c64634337c9c2a1e4f66a050d5 132 PANTHER PTHR41277:SF1 35 130 1.1E-26 T 23-04-2016 RPE_RS22310 2f669590d9b75ff2537a00d23574b8da 685 Pfam PF13249 Squalene-hopene cyclase N-terminal domain 23 315 2.6E-95 T 23-04-2016 IPR032697 Squalene cyclase, N-terminal RPE_RS22310 2f669590d9b75ff2537a00d23574b8da 685 PANTHER PTHR11764:SF12 654 683 1.7E-222 T 23-04-2016 RPE_RS22310 2f669590d9b75ff2537a00d23574b8da 685 PANTHER PTHR11764:SF12 18 627 1.7E-222 T 23-04-2016 RPE_RS22310 2f669590d9b75ff2537a00d23574b8da 685 SUPERFAMILY SSF48239 218 285 1.26E-95 T 23-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid RPE_RS22310 2f669590d9b75ff2537a00d23574b8da 685 SUPERFAMILY SSF48239 327 629 1.26E-95 T 23-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid RPE_RS22310 2f669590d9b75ff2537a00d23574b8da 685 SUPERFAMILY SSF48239 656 680 1.26E-95 T 23-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid RPE_RS22310 2f669590d9b75ff2537a00d23574b8da 685 PANTHER PTHR11764 654 683 1.7E-222 T 23-04-2016 RPE_RS22310 2f669590d9b75ff2537a00d23574b8da 685 PANTHER PTHR11764 18 627 1.7E-222 T 23-04-2016 RPE_RS22310 2f669590d9b75ff2537a00d23574b8da 685 SUPERFAMILY SSF48239 47 317 1.99E-67 T 23-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid RPE_RS22310 2f669590d9b75ff2537a00d23574b8da 685 Gene3D G3DSA:1.50.10.20 45 315 1.1E-54 T 23-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid RPE_RS22310 2f669590d9b75ff2537a00d23574b8da 685 Gene3D G3DSA:1.50.10.20 326 676 3.8E-102 T 23-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid RPE_RS22310 2f669590d9b75ff2537a00d23574b8da 685 TIGRFAM TIGR01507 hopene_cyclase: squalene-hopene cyclase 18 628 1.8E-194 T 23-04-2016 IPR006400 Squalene hopene cyclase GO:0016866|GO:0019746 KEGG: 00030+4.2.1.12|KEGG: 00909+4.2.1.129+5.4.99.17|MetaCyc: PWY-6098|MetaCyc: PWY-7072|UniPathway: UPA00337 RPE_RS22310 2f669590d9b75ff2537a00d23574b8da 685 TIGRFAM TIGR01787 squalene_cyclas: squalene/oxidosqualene cyclases 23 628 1.3E-152 T 23-04-2016 IPR018333 Squalene cyclase GO:0016866 RPE_RS22310 2f669590d9b75ff2537a00d23574b8da 685 Pfam PF13243 Squalene-hopene cyclase C-terminal domain 330 628 4.0E-121 T 23-04-2016 IPR032696 Squalene cyclase, C-terminal RPE_RS18915 33c21d8548f05c911a18d4912f52853d 265 Gene3D G3DSA:3.40.50.300 11 260 2.3E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18915 33c21d8548f05c911a18d4912f52853d 265 PANTHER PTHR24220:SF358 136 261 4.8E-115 T 23-04-2016 RPE_RS18915 33c21d8548f05c911a18d4912f52853d 265 PANTHER PTHR24220:SF358 15 120 4.8E-115 T 23-04-2016 RPE_RS18915 33c21d8548f05c911a18d4912f52853d 265 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 239 261 5.8E-12 T 23-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RPE_RS18915 33c21d8548f05c911a18d4912f52853d 265 SMART SM00382 38 239 9.1E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS18915 33c21d8548f05c911a18d4912f52853d 265 SUPERFAMILY SSF52540 12 261 5.75E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18915 33c21d8548f05c911a18d4912f52853d 265 Pfam PF00005 ABC transporter 29 189 5.8E-31 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS18915 33c21d8548f05c911a18d4912f52853d 265 PANTHER PTHR24220 136 261 4.8E-115 T 23-04-2016 RPE_RS18915 33c21d8548f05c911a18d4912f52853d 265 PANTHER PTHR24220 15 120 4.8E-115 T 23-04-2016 RPE_RS16070 b779862b44b296a011ac7074d1134ab4 238 SUPERFAMILY SSF52540 3 233 1.18E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16070 b779862b44b296a011ac7074d1134ab4 238 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS16070 b779862b44b296a011ac7074d1134ab4 238 PANTHER PTHR24220 6 237 1.1E-106 T 23-04-2016 RPE_RS16070 b779862b44b296a011ac7074d1134ab4 238 Gene3D G3DSA:3.40.50.300 3 229 1.2E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16070 b779862b44b296a011ac7074d1134ab4 238 Pfam PF00005 ABC transporter 22 165 1.4E-26 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS16070 b779862b44b296a011ac7074d1134ab4 238 SMART SM00382 29 214 6.2E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS16070 b779862b44b296a011ac7074d1134ab4 238 PANTHER PTHR24220:SF568 6 237 1.1E-106 T 23-04-2016 RPE_RS19855 ba438e368cccfc1992dbb33011ac4b18 183 Gene3D G3DSA:3.30.450.20 66 158 1.0E-20 T 23-04-2016 RPE_RS19855 ba438e368cccfc1992dbb33011ac4b18 183 SMART SM01049 20 107 1.5E-9 T 23-04-2016 IPR033480 Single Cache domain 2 RPE_RS19855 ba438e368cccfc1992dbb33011ac4b18 183 Pfam PF17200 Single Cache domain 2 57 141 4.3E-16 T 23-04-2016 IPR033480 Single Cache domain 2 RPE_RS23760 53a4bf3aaf3b86bfd0ad4dad3f7c81b9 285 Gene3D G3DSA:1.20.120.80 78 274 6.2E-73 T 23-04-2016 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 RPE_RS23760 53a4bf3aaf3b86bfd0ad4dad3f7c81b9 285 PANTHER PTHR11403 2 277 2.4E-130 T 23-04-2016 IPR024791 Cytochrome c oxidase subunit III GO:0015002|GO:0016020|GO:0019646 RPE_RS23760 53a4bf3aaf3b86bfd0ad4dad3f7c81b9 285 Pfam PF00510 Cytochrome c oxidase subunit III 9 274 1.6E-98 T 23-04-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 RPE_RS23760 53a4bf3aaf3b86bfd0ad4dad3f7c81b9 285 SUPERFAMILY SSF81452 5 274 1.01E-97 T 23-04-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 RPE_RS23760 53a4bf3aaf3b86bfd0ad4dad3f7c81b9 285 PANTHER PTHR11403:SF7 2 277 2.4E-130 T 23-04-2016 RPE_RS23760 53a4bf3aaf3b86bfd0ad4dad3f7c81b9 285 Gene3D G3DSA:1.10.287.70 5 74 3.9E-28 T 23-04-2016 RPE_RS12915 133493ea34fb7b1c7baf5677fd1f0292 308 SUPERFAMILY SSF51735 12 220 1.05E-50 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS12915 133493ea34fb7b1c7baf5677fd1f0292 308 PANTHER PTHR24320 8 304 6.8E-104 T 23-04-2016 RPE_RS12915 133493ea34fb7b1c7baf5677fd1f0292 308 PANTHER PTHR24320:SF86 8 304 6.8E-104 T 23-04-2016 RPE_RS12915 133493ea34fb7b1c7baf5677fd1f0292 308 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 91 102 3.5E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS12915 133493ea34fb7b1c7baf5677fd1f0292 308 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 137 153 3.5E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS12915 133493ea34fb7b1c7baf5677fd1f0292 308 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 15 32 3.5E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS12915 133493ea34fb7b1c7baf5677fd1f0292 308 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 198 215 3.5E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS12915 133493ea34fb7b1c7baf5677fd1f0292 308 Gene3D G3DSA:3.40.50.720 12 215 2.2E-53 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS12915 133493ea34fb7b1c7baf5677fd1f0292 308 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 162 190 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RPE_RS12915 133493ea34fb7b1c7baf5677fd1f0292 308 Pfam PF00106 short chain dehydrogenase 15 214 1.4E-27 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS12915 133493ea34fb7b1c7baf5677fd1f0292 308 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 7.2E-5 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS12915 133493ea34fb7b1c7baf5677fd1f0292 308 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 175 194 7.2E-5 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS12915 133493ea34fb7b1c7baf5677fd1f0292 308 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 7.2E-5 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS09075 5a07dc842ef3bd94c0dc22abbc7294b0 259 PANTHER PTHR30502 2 259 5.7E-81 T 23-04-2016 RPE_RS09075 5a07dc842ef3bd94c0dc22abbc7294b0 259 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 24 240 3.2E-36 T 23-04-2016 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 RPE_RS09075 5a07dc842ef3bd94c0dc22abbc7294b0 259 Gene3D G3DSA:3.20.20.60 2 249 4.8E-70 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RPE_RS09075 5a07dc842ef3bd94c0dc22abbc7294b0 259 SUPERFAMILY SSF51621 2 251 2.36E-73 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RPE_RS09075 5a07dc842ef3bd94c0dc22abbc7294b0 259 PANTHER PTHR30502:SF0 2 259 5.7E-81 T 23-04-2016 RPE_RS21895 883831256529673d6e76c6cd24fae724 327 PANTHER PTHR17490 16 324 1.3E-91 T 23-04-2016 RPE_RS21895 883831256529673d6e76c6cd24fae724 327 Pfam PF03481 Putative GTP-binding controlling metal-binding 203 323 8.8E-19 T 23-04-2016 IPR005145 Putative GTP-binding controlling metal-binding domain RPE_RS21895 883831256529673d6e76c6cd24fae724 327 Pfam PF01300 Telomere recombination 24 198 1.5E-54 T 23-04-2016 IPR006070 YrdC-like domain GO:0003725 RPE_RS21895 883831256529673d6e76c6cd24fae724 327 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 12 209 5.9E-55 T 23-04-2016 IPR006070 YrdC-like domain GO:0003725 RPE_RS21895 883831256529673d6e76c6cd24fae724 327 Gene3D G3DSA:3.90.870.10 12 206 1.2E-72 T 23-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain RPE_RS21895 883831256529673d6e76c6cd24fae724 327 PIRSF PIRSF004930 2 327 8.6E-106 T 23-04-2016 IPR010923 tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 RPE_RS21895 883831256529673d6e76c6cd24fae724 327 SUPERFAMILY SSF55821 15 211 3.02E-59 T 23-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain RPE_RS21895 883831256529673d6e76c6cd24fae724 327 PANTHER PTHR17490:SF3 16 324 1.3E-91 T 23-04-2016 RPE_RS09805 8f9b0742c4f4f3b3997e57519a31ee41 460 SUPERFAMILY SSF160240 210 287 5.89E-11 T 23-04-2016 RPE_RS09805 8f9b0742c4f4f3b3997e57519a31ee41 460 Gene3D G3DSA:3.30.70.1350 295 367 5.8E-14 T 23-04-2016 IPR027470 Cation efflux protein, cytoplasmic domain RPE_RS09805 8f9b0742c4f4f3b3997e57519a31ee41 460 Gene3D G3DSA:3.30.70.1350 208 287 1.5E-11 T 23-04-2016 IPR027470 Cation efflux protein, cytoplasmic domain RPE_RS09805 8f9b0742c4f4f3b3997e57519a31ee41 460 Gene3D G3DSA:3.30.70.1350 376 457 1.0E-16 T 23-04-2016 IPR027470 Cation efflux protein, cytoplasmic domain RPE_RS09805 8f9b0742c4f4f3b3997e57519a31ee41 460 SUPERFAMILY SSF161111 9 208 4.18E-49 T 23-04-2016 RPE_RS09805 8f9b0742c4f4f3b3997e57519a31ee41 460 PANTHER PTHR11562:SF55 316 375 7.7E-79 T 23-04-2016 RPE_RS09805 8f9b0742c4f4f3b3997e57519a31ee41 460 PANTHER PTHR11562:SF55 3 237 7.7E-79 T 23-04-2016 RPE_RS09805 8f9b0742c4f4f3b3997e57519a31ee41 460 PANTHER PTHR11562 316 375 7.7E-79 T 23-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RPE_RS09805 8f9b0742c4f4f3b3997e57519a31ee41 460 PANTHER PTHR11562 3 237 7.7E-79 T 23-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RPE_RS09805 8f9b0742c4f4f3b3997e57519a31ee41 460 SUPERFAMILY SSF160240 378 456 4.32E-13 T 23-04-2016 RPE_RS09805 8f9b0742c4f4f3b3997e57519a31ee41 460 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 10 277 2.6E-66 T 23-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RPE_RS09805 8f9b0742c4f4f3b3997e57519a31ee41 460 Pfam PF16916 Dimerisation domain of Zinc Transporter 214 279 2.9E-7 T 23-04-2016 IPR027470 Cation efflux protein, cytoplasmic domain RPE_RS09805 8f9b0742c4f4f3b3997e57519a31ee41 460 Pfam PF16916 Dimerisation domain of Zinc Transporter 292 365 8.5E-13 T 23-04-2016 IPR027470 Cation efflux protein, cytoplasmic domain RPE_RS09805 8f9b0742c4f4f3b3997e57519a31ee41 460 Pfam PF16916 Dimerisation domain of Zinc Transporter 381 456 3.4E-11 T 23-04-2016 IPR027470 Cation efflux protein, cytoplasmic domain RPE_RS09805 8f9b0742c4f4f3b3997e57519a31ee41 460 Pfam PF01545 Cation efflux family 15 207 2.8E-41 T 23-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RPE_RS09805 8f9b0742c4f4f3b3997e57519a31ee41 460 SUPERFAMILY SSF160240 293 366 2.35E-13 T 23-04-2016 RPE_RS09805 8f9b0742c4f4f3b3997e57519a31ee41 460 Gene3D G3DSA:1.20.1510.10 10 207 5.6E-42 T 23-04-2016 IPR027469 Cation efflux protein transmembrane domain RPE_RS06555 9266d9c6ccc5d748cbfc722a2c65542f 152 Gene3D G3DSA:1.20.1260.10 2 125 1.3E-4 T 23-04-2016 IPR012347 Ferritin-related RPE_RS06555 9266d9c6ccc5d748cbfc722a2c65542f 152 Pfam PF09537 Domain of unknown function (DUF2383) 5 112 3.6E-25 T 23-04-2016 IPR019052 Domain of unknown function DUF2383 RPE_RS21390 c76f95f4256a2eeaf3c95051f87948a8 389 PANTHER PTHR24421:SF16 17 380 3.9E-145 T 23-04-2016 RPE_RS21390 c76f95f4256a2eeaf3c95051f87948a8 389 Pfam PF01339 CheB methylesterase 201 379 2.0E-51 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RPE_RS21390 c76f95f4256a2eeaf3c95051f87948a8 389 Pfam PF00072 Response regulator receiver domain 21 129 6.4E-20 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS21390 c76f95f4256a2eeaf3c95051f87948a8 389 SMART SM00448 19 134 1.2E-19 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS21390 c76f95f4256a2eeaf3c95051f87948a8 389 Gene3D G3DSA:3.40.50.2300 14 129 7.3E-28 T 23-04-2016 RPE_RS21390 c76f95f4256a2eeaf3c95051f87948a8 389 PIRSF PIRSF000876 17 388 8.6E-121 T 23-04-2016 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RPE_RS21390 c76f95f4256a2eeaf3c95051f87948a8 389 SUPERFAMILY SSF52172 17 129 4.13E-26 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS21390 c76f95f4256a2eeaf3c95051f87948a8 389 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 19 385 35.309 T 23-04-2016 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RPE_RS21390 c76f95f4256a2eeaf3c95051f87948a8 389 SUPERFAMILY SSF52738 196 385 4.84E-61 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RPE_RS21390 c76f95f4256a2eeaf3c95051f87948a8 389 PANTHER PTHR24421 17 380 3.9E-145 T 23-04-2016 RPE_RS21390 c76f95f4256a2eeaf3c95051f87948a8 389 Gene3D G3DSA:3.40.50.180 196 384 1.6E-65 T 23-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RPE_RS12890 4b3b07a361770cc23889742c241a9390 765 PANTHER PTHR30619 52 571 3.6E-97 T 23-04-2016 RPE_RS12890 4b3b07a361770cc23889742c241a9390 765 PANTHER PTHR30619:SF2 52 571 3.6E-97 T 23-04-2016 RPE_RS12890 4b3b07a361770cc23889742c241a9390 765 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 292 487 5.6E-23 T 23-04-2016 IPR004477 ComEC/Rec2-related protein RPE_RS12890 4b3b07a361770cc23889742c241a9390 765 Pfam PF13567 Domain of unknown function (DUF4131) 61 224 1.2E-20 T 23-04-2016 IPR025405 Domain of unknown function DUF4131 RPE_RS12890 4b3b07a361770cc23889742c241a9390 765 Pfam PF03772 Competence protein 270 554 2.0E-59 T 23-04-2016 IPR004477 ComEC/Rec2-related protein RPE_RS08475 64800f74d3a7b880405023313152f6e5 417 Gene3D G3DSA:3.30.9.10 271 344 1.8E-10 T 23-04-2016 RPE_RS08475 64800f74d3a7b880405023313152f6e5 417 Gene3D G3DSA:3.30.9.10 138 191 1.8E-10 T 23-04-2016 RPE_RS08475 64800f74d3a7b880405023313152f6e5 417 SUPERFAMILY SSF51905 359 416 1.23E-48 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS08475 64800f74d3a7b880405023313152f6e5 417 SUPERFAMILY SSF51905 119 271 1.23E-48 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS08475 64800f74d3a7b880405023313152f6e5 417 SUPERFAMILY SSF51905 6 60 1.23E-48 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS08475 64800f74d3a7b880405023313152f6e5 417 PANTHER PTHR13847:SF216 8 64 1.6E-98 T 23-04-2016 RPE_RS08475 64800f74d3a7b880405023313152f6e5 417 PANTHER PTHR13847:SF216 111 416 1.6E-98 T 23-04-2016 RPE_RS08475 64800f74d3a7b880405023313152f6e5 417 Gene3D G3DSA:3.50.50.60 3 62 1.7E-57 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS08475 64800f74d3a7b880405023313152f6e5 417 Gene3D G3DSA:3.50.50.60 359 416 1.7E-57 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS08475 64800f74d3a7b880405023313152f6e5 417 Gene3D G3DSA:3.50.50.60 112 134 1.7E-57 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS08475 64800f74d3a7b880405023313152f6e5 417 Gene3D G3DSA:3.50.50.60 192 270 1.7E-57 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS08475 64800f74d3a7b880405023313152f6e5 417 SUPERFAMILY SSF54373 274 359 2.35E-9 T 23-04-2016 RPE_RS08475 64800f74d3a7b880405023313152f6e5 417 PANTHER PTHR13847 8 64 1.6E-98 T 23-04-2016 RPE_RS08475 64800f74d3a7b880405023313152f6e5 417 PANTHER PTHR13847 111 416 1.6E-98 T 23-04-2016 RPE_RS08475 64800f74d3a7b880405023313152f6e5 417 Pfam PF01266 FAD dependent oxidoreductase 7 398 6.3E-60 T 23-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RPE_RS10995 f079db8d77da58125d958ff6e1b91719 113 Gene3D G3DSA:2.30.30.110 3 109 1.6E-28 T 23-04-2016 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor RPE_RS10995 f079db8d77da58125d958ff6e1b91719 113 PANTHER PTHR33988:SF3 2 112 4.6E-30 T 23-04-2016 RPE_RS10995 f079db8d77da58125d958ff6e1b91719 113 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 7 107 2.7E-19 T 23-04-2016 IPR003477 mRNA interferase PemK-like protein GO:0003677 RPE_RS10995 f079db8d77da58125d958ff6e1b91719 113 SUPERFAMILY SSF50118 3 109 8.5E-28 T 23-04-2016 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor RPE_RS10995 f079db8d77da58125d958ff6e1b91719 113 PANTHER PTHR33988 2 112 4.6E-30 T 23-04-2016 RPE_RS17335 edcd3338728c94658937329a39ede94b 143 Pfam PF10722 Putative bacterial sensory transduction regulator 14 137 2.1E-11 T 23-04-2016 IPR019660 Putative sensory transduction regulator YbjN RPE_RS13090 d8ffd873c4638537290a63c42387a9fd 185 PANTHER PTHR30543:SF6 1 185 6.0E-58 T 23-04-2016 RPE_RS13090 d8ffd873c4638537290a63c42387a9fd 185 Gene3D G3DSA:3.40.50.360 3 181 1.2E-52 T 23-04-2016 IPR029039 Flavoprotein-like domain RPE_RS13090 d8ffd873c4638537290a63c42387a9fd 185 Pfam PF03358 NADPH-dependent FMN reductase 6 148 6.1E-36 T 23-04-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 RPE_RS13090 d8ffd873c4638537290a63c42387a9fd 185 SUPERFAMILY SSF52218 6 176 2.01E-48 T 23-04-2016 IPR029039 Flavoprotein-like domain RPE_RS13090 d8ffd873c4638537290a63c42387a9fd 185 PANTHER PTHR30543 1 185 6.0E-58 T 23-04-2016 RPE_RS17250 d028e83344f322c31f4e33dc63344194 133 Pfam PF09945 Predicted membrane protein (DUF2177) 4 123 3.6E-36 T 23-04-2016 IPR018687 Protein of unknown function DUF2177, membrane RPE_RS02340 136f6aeebb430a45299dd58cde10473d 150 Pfam PF00692 dUTPase 17 149 1.2E-32 T 23-04-2016 IPR008180 Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase GO:0016787|GO:0046080 RPE_RS02340 136f6aeebb430a45299dd58cde10473d 150 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 3 150 34.919 T 23-04-2016 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|UniPathway: UPA00610 RPE_RS02340 136f6aeebb430a45299dd58cde10473d 150 SUPERFAMILY SSF51283 3 150 1.31E-50 T 23-04-2016 IPR029054 dUTPase-like RPE_RS02340 136f6aeebb430a45299dd58cde10473d 150 Gene3D G3DSA:2.70.40.10 4 150 4.1E-53 T 23-04-2016 IPR029054 dUTPase-like RPE_RS02340 136f6aeebb430a45299dd58cde10473d 150 PANTHER PTHR11241 14 150 3.0E-51 T 23-04-2016 RPE_RS02340 136f6aeebb430a45299dd58cde10473d 150 TIGRFAM TIGR00576 dut: dUTP diphosphatase 11 150 4.8E-53 T 23-04-2016 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|UniPathway: UPA00610 RPE_RS03845 429ffc52ba2ab4274347bb46f461f0b9 216 PANTHER PTHR24023:SF517 11 204 9.0E-27 T 23-04-2016 RPE_RS03845 429ffc52ba2ab4274347bb46f461f0b9 216 PANTHER PTHR24023 11 204 9.0E-27 T 23-04-2016 RPE_RS03845 429ffc52ba2ab4274347bb46f461f0b9 216 Pfam PF01391 Collagen triple helix repeat (20 copies) 13 71 7.7E-10 T 23-04-2016 IPR008160 Collagen triple helix repeat RPE_RS03845 429ffc52ba2ab4274347bb46f461f0b9 216 Pfam PF01391 Collagen triple helix repeat (20 copies) 67 124 3.2E-9 T 23-04-2016 IPR008160 Collagen triple helix repeat RPE_RS09435 71478362f9f4d186ac14a5a233361bc9 321 Pfam PF10098 Uncharacterised protein conserved in bacteria (DUF2336) 138 270 2.7E-12 T 23-04-2016 IPR019285 Protein of unknown function DUF2336 RPE_RS06335 6183b99a6dbe0efd2cef8b2aff214521 545 Gene3D G3DSA:3.40.50.1220 186 331 9.1E-27 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RPE_RS06335 6183b99a6dbe0efd2cef8b2aff214521 545 PANTHER PTHR18968 7 544 2.5E-126 T 23-04-2016 RPE_RS06335 6183b99a6dbe0efd2cef8b2aff214521 545 SUPERFAMILY SSF52518 368 544 9.65E-36 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS06335 6183b99a6dbe0efd2cef8b2aff214521 545 PANTHER PTHR18968:SF133 7 544 2.5E-126 T 23-04-2016 RPE_RS06335 6183b99a6dbe0efd2cef8b2aff214521 545 Gene3D G3DSA:3.40.50.970 2 177 2.2E-50 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS06335 6183b99a6dbe0efd2cef8b2aff214521 545 SUPERFAMILY SSF52467 155 347 5.2E-20 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RPE_RS06335 6183b99a6dbe0efd2cef8b2aff214521 545 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 403 542 1.2E-25 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RPE_RS06335 6183b99a6dbe0efd2cef8b2aff214521 545 SUPERFAMILY SSF52518 3 180 2.32E-45 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS06335 6183b99a6dbe0efd2cef8b2aff214521 545 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 171 1.1E-45 T 23-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RPE_RS06335 6183b99a6dbe0efd2cef8b2aff214521 545 Gene3D G3DSA:3.40.50.970 351 544 2.7E-39 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS06335 6183b99a6dbe0efd2cef8b2aff214521 545 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 202 324 1.2E-12 T 23-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RPE_RS15580 e8776f93ea86b5d104d53bfd22687aa7 385 SUPERFAMILY SSF51338 352 384 7.56E-16 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RPE_RS15580 e8776f93ea86b5d104d53bfd22687aa7 385 SUPERFAMILY SSF51338 4 57 7.56E-16 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RPE_RS15580 e8776f93ea86b5d104d53bfd22687aa7 385 SUPERFAMILY SSF51556 219 352 1.01E-14 T 23-04-2016 IPR032466 Metal-dependent hydrolase RPE_RS15580 e8776f93ea86b5d104d53bfd22687aa7 385 SUPERFAMILY SSF51556 57 191 1.01E-14 T 23-04-2016 IPR032466 Metal-dependent hydrolase RPE_RS15580 e8776f93ea86b5d104d53bfd22687aa7 385 Gene3D G3DSA:2.30.40.10 7 73 1.1E-12 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RPE_RS15580 e8776f93ea86b5d104d53bfd22687aa7 385 PANTHER PTHR11271:SF43 7 384 1.8E-80 T 23-04-2016 RPE_RS15580 e8776f93ea86b5d104d53bfd22687aa7 385 Pfam PF01979 Amidohydrolase family 215 380 3.9E-7 T 23-04-2016 IPR006680 Amidohydrolase-related GO:0016787 RPE_RS15580 e8776f93ea86b5d104d53bfd22687aa7 385 TIGRFAM TIGR02318 phosphono_phnM: phosphonate metabolism protein PhnM 9 384 5.2E-155 T 23-04-2016 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399 RPE_RS15580 e8776f93ea86b5d104d53bfd22687aa7 385 PIRSF PIRSF038971 6 385 5.3E-128 T 23-04-2016 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399 RPE_RS15580 e8776f93ea86b5d104d53bfd22687aa7 385 Gene3D G3DSA:2.30.40.10 264 365 1.7E-6 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RPE_RS15580 e8776f93ea86b5d104d53bfd22687aa7 385 PANTHER PTHR11271 7 384 1.8E-80 T 23-04-2016 RPE_RS08590 a42e0ef18ea58fec2b2c1b472a0a047d 563 Pfam PF00501 AMP-binding enzyme 29 464 7.0E-100 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS08590 a42e0ef18ea58fec2b2c1b472a0a047d 563 Gene3D G3DSA:3.30.300.30 461 559 2.1E-31 T 23-04-2016 RPE_RS08590 a42e0ef18ea58fec2b2c1b472a0a047d 563 ProSitePatterns PS00455 Putative AMP-binding domain signature. 209 220 - T 23-04-2016 IPR020845 AMP-binding, conserved site RPE_RS08590 a42e0ef18ea58fec2b2c1b472a0a047d 563 Gene3D G3DSA:2.30.38.10 383 455 1.1E-27 T 23-04-2016 RPE_RS08590 a42e0ef18ea58fec2b2c1b472a0a047d 563 Pfam PF13193 AMP-binding enzyme C-terminal domain 473 547 7.0E-21 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RPE_RS08590 a42e0ef18ea58fec2b2c1b472a0a047d 563 SUPERFAMILY SSF56801 17 559 7.33E-148 T 23-04-2016 RPE_RS08590 a42e0ef18ea58fec2b2c1b472a0a047d 563 Gene3D G3DSA:3.40.50.980 24 151 5.7E-40 T 23-04-2016 RPE_RS08590 a42e0ef18ea58fec2b2c1b472a0a047d 563 Gene3D G3DSA:3.40.50.980 183 213 5.7E-40 T 23-04-2016 RPE_RS08590 a42e0ef18ea58fec2b2c1b472a0a047d 563 PANTHER PTHR24096 180 557 9.0E-169 T 23-04-2016 RPE_RS08590 a42e0ef18ea58fec2b2c1b472a0a047d 563 PANTHER PTHR24096 14 154 9.0E-169 T 23-04-2016 RPE_RS08590 a42e0ef18ea58fec2b2c1b472a0a047d 563 Gene3D G3DSA:3.40.50.980 214 382 1.8E-39 T 23-04-2016 RPE_RS11230 d5d0d1e81d3190ae1e519214b1045a88 495 PANTHER PTHR21343 1 484 1.7E-199 T 23-04-2016 RPE_RS11230 d5d0d1e81d3190ae1e519214b1045a88 495 SUPERFAMILY SSF52317 257 446 2.21E-39 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RPE_RS11230 d5d0d1e81d3190ae1e519214b1045a88 495 Gene3D G3DSA:3.40.50.880 257 444 1.4E-27 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RPE_RS11230 d5d0d1e81d3190ae1e519214b1045a88 495 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 487 196.335 T 23-04-2016 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 UniPathway: UPA00148 RPE_RS11230 d5d0d1e81d3190ae1e519214b1045a88 495 PANTHER PTHR21343:SF1 1 484 1.7E-199 T 23-04-2016 RPE_RS11230 d5d0d1e81d3190ae1e519214b1045a88 495 Gene3D G3DSA:3.40.50.300 6 235 1.9E-43 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS11230 d5d0d1e81d3190ae1e519214b1045a88 495 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 256 439 1.5E-56 T 23-04-2016 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 UniPathway: UPA00148 RPE_RS11230 d5d0d1e81d3190ae1e519214b1045a88 495 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 8 228 1.5E-26 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain RPE_RS11230 d5d0d1e81d3190ae1e519214b1045a88 495 SUPERFAMILY SSF52540 6 241 1.61E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS11230 d5d0d1e81d3190ae1e519214b1045a88 495 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 8 479 1.5E-135 T 23-04-2016 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 UniPathway: UPA00148 RPE_RS04875 c79e5ebd889a8e234d91c7d2c0ad880d 460 Pfam PF00072 Response regulator receiver domain 13 106 1.1E-5 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS04875 c79e5ebd889a8e234d91c7d2c0ad880d 460 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 144 157 - T 23-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RPE_RS04875 c79e5ebd889a8e234d91c7d2c0ad880d 460 Gene3D G3DSA:3.40.50.2300 2 122 3.7E-10 T 23-04-2016 RPE_RS04875 c79e5ebd889a8e234d91c7d2c0ad880d 460 SUPERFAMILY SSF52172 13 164 1.71E-14 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS04875 c79e5ebd889a8e234d91c7d2c0ad880d 460 SUPERFAMILY SSF46689 380 437 3.09E-12 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS04875 c79e5ebd889a8e234d91c7d2c0ad880d 460 SMART SM00382 140 283 1.6E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS04875 c79e5ebd889a8e234d91c7d2c0ad880d 460 PANTHER PTHR32071:SF21 19 453 3.0E-210 T 23-04-2016 IPR029995 Transcriptional regulatory protein FlbD GO:0003700|GO:0006355 RPE_RS04875 c79e5ebd889a8e234d91c7d2c0ad880d 460 SMART SM00448 1 109 0.0037 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS04875 c79e5ebd889a8e234d91c7d2c0ad880d 460 Gene3D G3DSA:1.10.10.60 347 437 4.5E-19 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS04875 c79e5ebd889a8e234d91c7d2c0ad880d 460 Gene3D G3DSA:1.10.8.60 293 346 3.9E-21 T 23-04-2016 RPE_RS04875 c79e5ebd889a8e234d91c7d2c0ad880d 460 Gene3D G3DSA:3.40.50.300 123 292 3.9E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS04875 c79e5ebd889a8e234d91c7d2c0ad880d 460 Pfam PF02954 Bacterial regulatory protein, Fis family 397 437 8.4E-15 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RPE_RS04875 c79e5ebd889a8e234d91c7d2c0ad880d 460 Pfam PF00158 Sigma-54 interaction domain 121 286 3.7E-68 T 23-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RPE_RS04875 c79e5ebd889a8e234d91c7d2c0ad880d 460 SUPERFAMILY SSF52540 120 361 3.42E-69 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS04875 c79e5ebd889a8e234d91c7d2c0ad880d 460 PANTHER PTHR32071 19 453 3.0E-210 T 23-04-2016 RPE_RS04875 c79e5ebd889a8e234d91c7d2c0ad880d 460 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 420 440 9.1E-7 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RPE_RS04875 c79e5ebd889a8e234d91c7d2c0ad880d 460 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 403 420 9.1E-7 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RPE_RS05900 3a14f2e5827208e4d4e9fb885a348f3d 244 PANTHER PTHR30587:SF0 40 243 1.7E-92 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RPE_RS05900 3a14f2e5827208e4d4e9fb885a348f3d 244 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 45 243 2.5E-86 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RPE_RS05900 3a14f2e5827208e4d4e9fb885a348f3d 244 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 165 177 6.4E-25 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RPE_RS05900 3a14f2e5827208e4d4e9fb885a348f3d 244 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 41 50 6.4E-25 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RPE_RS05900 3a14f2e5827208e4d4e9fb885a348f3d 244 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 101 113 6.4E-25 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RPE_RS05900 3a14f2e5827208e4d4e9fb885a348f3d 244 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 233 243 6.4E-25 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RPE_RS05900 3a14f2e5827208e4d4e9fb885a348f3d 244 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 141 153 6.4E-25 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RPE_RS05900 3a14f2e5827208e4d4e9fb885a348f3d 244 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 113 127 6.4E-25 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RPE_RS05900 3a14f2e5827208e4d4e9fb885a348f3d 244 PANTHER PTHR30587 40 243 1.7E-92 T 23-04-2016 RPE_RS05900 3a14f2e5827208e4d4e9fb885a348f3d 244 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 82 101 5.5E-60 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RPE_RS05900 3a14f2e5827208e4d4e9fb885a348f3d 244 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 172 192 5.5E-60 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RPE_RS05900 3a14f2e5827208e4d4e9fb885a348f3d 244 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 43 62 5.5E-60 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RPE_RS05900 3a14f2e5827208e4d4e9fb885a348f3d 244 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 193 214 5.5E-60 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RPE_RS05900 3a14f2e5827208e4d4e9fb885a348f3d 244 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 62 82 5.5E-60 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RPE_RS05900 3a14f2e5827208e4d4e9fb885a348f3d 244 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 217 242 5.5E-60 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RPE_RS05900 3a14f2e5827208e4d4e9fb885a348f3d 244 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 172 187 - T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RPE_RS05900 3a14f2e5827208e4d4e9fb885a348f3d 244 Pfam PF00813 FliP family 45 238 7.9E-76 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RPE_RS05900 3a14f2e5827208e4d4e9fb885a348f3d 244 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 220 232 - T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RPE_RS05205 41938379094eb5d907b79487cc8ab039 626 Gene3D G3DSA:3.40.50.300 271 290 3.6E-10 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS05205 41938379094eb5d907b79487cc8ab039 626 Gene3D G3DSA:3.40.50.300 374 390 3.6E-10 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS05205 41938379094eb5d907b79487cc8ab039 626 Gene3D G3DSA:3.40.50.300 22 92 3.6E-10 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS05205 41938379094eb5d907b79487cc8ab039 626 Gene3D G3DSA:3.40.50.300 496 585 3.6E-10 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS05205 41938379094eb5d907b79487cc8ab039 626 Gene3D G3DSA:3.40.50.300 169 223 3.6E-10 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS05205 41938379094eb5d907b79487cc8ab039 626 Pfam PF13476 AAA domain 22 290 2.6E-7 T 23-04-2016 RPE_RS05205 41938379094eb5d907b79487cc8ab039 626 SUPERFAMILY SSF52540 22 138 1.26E-8 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS05205 41938379094eb5d907b79487cc8ab039 626 SUPERFAMILY SSF52540 353 420 1.26E-8 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS09880 f73d0bca645466f6a39665020d8a9471 98 PANTHER PTHR33175:SF1 4 98 9.0E-42 T 23-04-2016 RPE_RS09880 f73d0bca645466f6a39665020d8a9471 98 PANTHER PTHR33175 4 98 9.0E-42 T 23-04-2016 RPE_RS09880 f73d0bca645466f6a39665020d8a9471 98 SUPERFAMILY SSF47729 4 98 2.06E-17 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RPE_RS09880 f73d0bca645466f6a39665020d8a9471 98 Gene3D G3DSA:4.10.520.10 4 98 3.7E-18 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RPE_RS09880 f73d0bca645466f6a39665020d8a9471 98 SMART SM00411 4 98 0.0042 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RPE_RS09880 f73d0bca645466f6a39665020d8a9471 98 Pfam PF00216 Bacterial DNA-binding protein 4 98 3.3E-19 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RPE_RS02085 97fb53649ea8abad7687208f5477fe86 784 Gene3D G3DSA:1.10.150.310 503 634 3.2E-47 T 23-04-2016 IPR023097 Tex RuvX-like domain RPE_RS02085 97fb53649ea8abad7687208f5477fe86 784 Pfam PF16921 Tex protein YqgF-like domain 330 455 2.0E-51 T 23-04-2016 IPR032639 Tex protein, YqgF-like domain RPE_RS02085 97fb53649ea8abad7687208f5477fe86 784 SUPERFAMILY SSF53098 325 473 3.03E-49 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RPE_RS02085 97fb53649ea8abad7687208f5477fe86 784 Gene3D G3DSA:2.40.50.140 638 724 3.6E-28 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS02085 97fb53649ea8abad7687208f5477fe86 784 SUPERFAMILY SSF50249 642 727 1.34E-24 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS02085 97fb53649ea8abad7687208f5477fe86 784 Gene3D G3DSA:1.10.10.650 2 108 8.0E-44 T 23-04-2016 IPR023319 Tex-like protein, HTH domain RPE_RS02085 97fb53649ea8abad7687208f5477fe86 784 PANTHER PTHR10724:SF1 1 749 0.0 T 23-04-2016 RPE_RS02085 97fb53649ea8abad7687208f5477fe86 784 SUPERFAMILY SSF47781 474 561 8.45E-27 T 23-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 RPE_RS02085 97fb53649ea8abad7687208f5477fe86 784 Pfam PF00575 S1 RNA binding domain 652 724 2.3E-20 T 23-04-2016 IPR003029 S1 domain GO:0003676 RPE_RS02085 97fb53649ea8abad7687208f5477fe86 784 Pfam PF12836 Helix-hairpin-helix motif 495 559 1.9E-27 T 23-04-2016 RPE_RS02085 97fb53649ea8abad7687208f5477fe86 784 SMART SM00732 329 428 7.7E-35 T 23-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 RPE_RS02085 97fb53649ea8abad7687208f5477fe86 784 PANTHER PTHR10724 1 749 0.0 T 23-04-2016 RPE_RS02085 97fb53649ea8abad7687208f5477fe86 784 SUPERFAMILY SSF47781 564 635 2.11E-19 T 23-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 RPE_RS02085 97fb53649ea8abad7687208f5477fe86 784 Gene3D G3DSA:1.10.3500.10 455 501 1.9E-99 T 23-04-2016 IPR023323 Tex-like domain RPE_RS02085 97fb53649ea8abad7687208f5477fe86 784 Gene3D G3DSA:1.10.3500.10 109 325 1.9E-99 T 23-04-2016 IPR023323 Tex-like domain RPE_RS02085 97fb53649ea8abad7687208f5477fe86 784 SMART SM00316 653 724 4.6E-26 T 23-04-2016 IPR022967 RNA-binding domain, S1 RPE_RS02085 97fb53649ea8abad7687208f5477fe86 784 SUPERFAMILY SSF158832 2 324 1.44E-113 T 23-04-2016 RPE_RS02085 97fb53649ea8abad7687208f5477fe86 784 Gene3D G3DSA:3.30.420.140 329 454 1.2E-49 T 23-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 RPE_RS02085 97fb53649ea8abad7687208f5477fe86 784 Pfam PF09371 Tex-like protein N-terminal domain 8 191 1.0E-67 T 23-04-2016 IPR018974 Tex-like protein, N-terminal RPE_RS20395 32d05006681557c80fd1bdd000aef630 272 SUPERFAMILY SSF161098 6 255 2.15E-52 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS20395 32d05006681557c80fd1bdd000aef630 272 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 259 7.7E-16 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS20395 32d05006681557c80fd1bdd000aef630 272 PANTHER PTHR30222:SF1 1 257 4.0E-81 T 23-04-2016 RPE_RS20395 32d05006681557c80fd1bdd000aef630 272 Gene3D G3DSA:1.10.3720.10 12 260 3.3E-56 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS20395 32d05006681557c80fd1bdd000aef630 272 PANTHER PTHR30222 1 257 4.0E-81 T 23-04-2016 RPE_RS22350 b6a6425ace2f675cf049d84347784e5e 75 Gene3D G3DSA:1.10.260.40 7 65 5.8E-13 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS22350 b6a6425ace2f675cf049d84347784e5e 75 SUPERFAMILY SSF47413 6 64 1.85E-12 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS22350 b6a6425ace2f675cf049d84347784e5e 75 TIGRFAM TIGR03070 couple_hipB: transcriptional regulator, y4mF family 9 64 6.3E-21 T 23-04-2016 IPR017507 Transcription regulator, HipB-like RPE_RS22350 b6a6425ace2f675cf049d84347784e5e 75 SMART SM00530 13 68 6.2E-7 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RPE_RS22350 b6a6425ace2f675cf049d84347784e5e 75 Pfam PF13560 Helix-turn-helix domain 10 64 4.7E-10 T 23-04-2016 RPE_RS13045 3208c97b6b4cdf4c131adcf2061f3702 285 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 17 280 54.012 T 23-04-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 RPE_RS13045 3208c97b6b4cdf4c131adcf2061f3702 285 Pfam PF00793 DAHP synthetase I family 13 272 7.9E-68 T 23-04-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 RPE_RS13045 3208c97b6b4cdf4c131adcf2061f3702 285 Gene3D G3DSA:3.20.20.70 23 278 1.6E-112 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS13045 3208c97b6b4cdf4c131adcf2061f3702 285 PANTHER PTHR21057:SF2 8 278 3.2E-162 T 23-04-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 RPE_RS13045 3208c97b6b4cdf4c131adcf2061f3702 285 PANTHER PTHR21057 8 278 3.2E-162 T 23-04-2016 RPE_RS13045 3208c97b6b4cdf4c131adcf2061f3702 285 SUPERFAMILY SSF51569 9 278 3.3E-105 T 23-04-2016 RPE_RS13045 3208c97b6b4cdf4c131adcf2061f3702 285 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 23 278 7.4E-123 T 23-04-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 RPE_RS22220 20b058ff85fef2bd7148a965618ae726 206 Gene3D G3DSA:3.40.50.150 8 195 6.1E-34 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS22220 20b058ff85fef2bd7148a965618ae726 206 Pfam PF13489 Methyltransferase domain 32 187 1.3E-19 T 23-04-2016 RPE_RS22220 20b058ff85fef2bd7148a965618ae726 206 SUPERFAMILY SSF53335 6 198 1.19E-39 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS22220 20b058ff85fef2bd7148a965618ae726 206 PANTHER PTHR10108 8 195 7.4E-31 T 23-04-2016 RPE_RS04505 13eb815994ccb74b1d8ad2e670b916c9 338 SUPERFAMILY SSF55073 152 332 5.81E-33 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS04505 13eb815994ccb74b1d8ad2e670b916c9 338 Gene3D G3DSA:3.30.70.1230 155 329 7.0E-19 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RPE_RS04505 13eb815994ccb74b1d8ad2e670b916c9 338 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 157 326 3.1E-11 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RPE_RS12985 cb7334f0612faa5135b56eb6a36849c8 185 SUPERFAMILY SSF55040 18 162 1.22E-60 T 23-04-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 RPE_RS12985 cb7334f0612faa5135b56eb6a36849c8 185 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 11 159 1.3E-61 T 23-04-2016 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 UniPathway: UPA00344 RPE_RS12985 cb7334f0612faa5135b56eb6a36849c8 185 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase accessory protein [moaC]. 9 165 35.914 T 23-04-2016 IPR023046 Molybdenum cofactor biosynthesis C, bacterial-type UniPathway: UPA00344 RPE_RS12985 cb7334f0612faa5135b56eb6a36849c8 185 Gene3D G3DSA:3.30.70.640 10 164 2.5E-66 T 23-04-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 RPE_RS12985 cb7334f0612faa5135b56eb6a36849c8 185 Pfam PF01967 MoaC family 22 157 1.2E-54 T 23-04-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 RPE_RS12985 cb7334f0612faa5135b56eb6a36849c8 185 PANTHER PTHR22960 9 165 1.9E-95 T 23-04-2016 RPE_RS00325 fc9a0aab86e7c7cfc2c281ebdc6e8785 363 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 140 152 6.1E-43 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RPE_RS00325 fc9a0aab86e7c7cfc2c281ebdc6e8785 363 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 107 126 6.1E-43 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RPE_RS00325 fc9a0aab86e7c7cfc2c281ebdc6e8785 363 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 163 184 6.1E-43 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RPE_RS00325 fc9a0aab86e7c7cfc2c281ebdc6e8785 363 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 278 287 6.1E-43 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RPE_RS00325 fc9a0aab86e7c7cfc2c281ebdc6e8785 363 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 10 23 6.1E-43 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RPE_RS00325 fc9a0aab86e7c7cfc2c281ebdc6e8785 363 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 86 106 6.1E-43 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RPE_RS00325 fc9a0aab86e7c7cfc2c281ebdc6e8785 363 PANTHER PTHR11735:SF6 8 349 8.4E-134 T 23-04-2016 RPE_RS00325 fc9a0aab86e7c7cfc2c281ebdc6e8785 363 PANTHER PTHR11735 8 349 8.4E-134 T 23-04-2016 RPE_RS00325 fc9a0aab86e7c7cfc2c281ebdc6e8785 363 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 10 321 1.2E-90 T 23-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RPE_RS00325 fc9a0aab86e7c7cfc2c281ebdc6e8785 363 SUPERFAMILY SSF53067 9 133 1.17E-25 T 23-04-2016 RPE_RS00325 fc9a0aab86e7c7cfc2c281ebdc6e8785 363 SUPERFAMILY SSF53067 112 324 3.24E-37 T 23-04-2016 RPE_RS00325 fc9a0aab86e7c7cfc2c281ebdc6e8785 363 Gene3D G3DSA:3.30.420.40 8 168 6.9E-39 T 23-04-2016 RPE_RS00325 fc9a0aab86e7c7cfc2c281ebdc6e8785 363 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 7 346 61.554 T 23-04-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RPE_RS00325 fc9a0aab86e7c7cfc2c281ebdc6e8785 363 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 9 328 3.4E-116 T 23-04-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RPE_RS00325 fc9a0aab86e7c7cfc2c281ebdc6e8785 363 Pfam PF00814 Glycoprotease family 33 322 1.9E-92 T 23-04-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RPE_RS03480 caab1d050c246ea65e10a080db23cb08 456 Pfam PF07690 Major Facilitator Superfamily 37 405 1.8E-18 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RPE_RS03480 caab1d050c246ea65e10a080db23cb08 456 Gene3D G3DSA:1.20.1250.20 30 234 4.5E-11 T 23-04-2016 RPE_RS03480 caab1d050c246ea65e10a080db23cb08 456 Gene3D G3DSA:1.20.1250.20 263 447 2.0E-14 T 23-04-2016 RPE_RS03480 caab1d050c246ea65e10a080db23cb08 456 PANTHER PTHR12778 30 446 6.3E-106 T 23-04-2016 RPE_RS03480 caab1d050c246ea65e10a080db23cb08 456 SUPERFAMILY SSF103473 25 445 1.05E-31 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS16670 a7b0d28285bf7ba676b4335a77af705f 370 Pfam PF00512 His Kinase A (phospho-acceptor) domain 136 191 2.7E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS16670 a7b0d28285bf7ba676b4335a77af705f 370 SMART SM00304 173 232 13.0 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS16670 a7b0d28285bf7ba676b4335a77af705f 370 SMART SM00304 79 133 3.6E-11 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS16670 a7b0d28285bf7ba676b4335a77af705f 370 Pfam PF00672 HAMP domain 60 130 1.7E-13 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS16670 a7b0d28285bf7ba676b4335a77af705f 370 PANTHER PTHR24423 73 350 1.4E-93 T 23-04-2016 RPE_RS16670 a7b0d28285bf7ba676b4335a77af705f 370 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 243 350 6.9E-19 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS16670 a7b0d28285bf7ba676b4335a77af705f 370 PANTHER PTHR24423:SF508 73 350 1.4E-93 T 23-04-2016 RPE_RS16670 a7b0d28285bf7ba676b4335a77af705f 370 SUPERFAMILY SSF55874 188 351 1.96E-35 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS16670 a7b0d28285bf7ba676b4335a77af705f 370 SMART SM00388 134 198 1.1E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS16670 a7b0d28285bf7ba676b4335a77af705f 370 SMART SM00387 242 353 1.2E-29 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS16670 a7b0d28285bf7ba676b4335a77af705f 370 SUPERFAMILY SSF47384 117 196 1.55E-13 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS16670 a7b0d28285bf7ba676b4335a77af705f 370 SUPERFAMILY SSF158472 79 130 5.75E-7 T 23-04-2016 RPE_RS16670 a7b0d28285bf7ba676b4335a77af705f 370 PRINTS PR00344 Bacterial sensor protein C-terminal signature 278 292 1.6E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS16670 a7b0d28285bf7ba676b4335a77af705f 370 PRINTS PR00344 Bacterial sensor protein C-terminal signature 313 331 1.6E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS16670 a7b0d28285bf7ba676b4335a77af705f 370 PRINTS PR00344 Bacterial sensor protein C-terminal signature 296 306 1.6E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS16670 a7b0d28285bf7ba676b4335a77af705f 370 PRINTS PR00344 Bacterial sensor protein C-terminal signature 337 350 1.6E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS16670 a7b0d28285bf7ba676b4335a77af705f 370 Gene3D G3DSA:3.30.565.10 199 353 5.8E-36 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS16670 a7b0d28285bf7ba676b4335a77af705f 370 Gene3D G3DSA:1.10.287.130 124 189 4.0E-12 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS09780 03a78a3a87d28e2500d38b795305f91d 102 Pfam PF10048 Predicted integral membrane protein (DUF2282) 43 97 1.8E-23 T 23-04-2016 IPR018740 Protein of unknown function DUF2282, integral membrane RPE_RS21815 c591484cbd5ad122b3e2b54103d71f87 614 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 509 520 - T 23-04-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RPE_RS21815 c591484cbd5ad122b3e2b54103d71f87 614 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 611 44.007 T 23-04-2016 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RPE_RS21815 c591484cbd5ad122b3e2b54103d71f87 614 SUPERFAMILY SSF52016 421 610 6.51E-59 T 23-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RPE_RS21815 c591484cbd5ad122b3e2b54103d71f87 614 PANTHER PTHR21000 1 371 0.0 T 23-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RPE_RS21815 c591484cbd5ad122b3e2b54103d71f87 614 PANTHER PTHR21000 406 610 0.0 T 23-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RPE_RS21815 c591484cbd5ad122b3e2b54103d71f87 614 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 610 4.9E-248 T 23-04-2016 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RPE_RS21815 c591484cbd5ad122b3e2b54103d71f87 614 PANTHER PTHR21000:SF11 1 371 0.0 T 23-04-2016 RPE_RS21815 c591484cbd5ad122b3e2b54103d71f87 614 PANTHER PTHR21000:SF11 406 610 0.0 T 23-04-2016 RPE_RS21815 c591484cbd5ad122b3e2b54103d71f87 614 SUPERFAMILY SSF143975 4 420 6.93E-132 T 23-04-2016 RPE_RS21815 c591484cbd5ad122b3e2b54103d71f87 614 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 23-04-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RPE_RS21815 c591484cbd5ad122b3e2b54103d71f87 614 Pfam PF00920 Dehydratase family 34 608 9.5E-214 T 23-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RPE_RS14765 6c7792353588c4942e1efbb4c428e061 405 SUPERFAMILY SSF53383 4 389 1.79E-105 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS14765 6c7792353588c4942e1efbb4c428e061 405 Gene3D G3DSA:3.40.640.10 45 257 4.4E-60 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS14765 6c7792353588c4942e1efbb4c428e061 405 Gene3D G3DSA:3.90.1150.10 258 389 6.1E-42 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS14765 6c7792353588c4942e1efbb4c428e061 405 PANTHER PTHR11751:SF302 12 389 9.4E-215 T 23-04-2016 RPE_RS14765 6c7792353588c4942e1efbb4c428e061 405 Pfam PF00155 Aminotransferase class I and II 31 381 4.0E-57 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RPE_RS14765 6c7792353588c4942e1efbb4c428e061 405 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 235 248 - T 23-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 RPE_RS14765 6c7792353588c4942e1efbb4c428e061 405 PANTHER PTHR11751 12 389 9.4E-215 T 23-04-2016 RPE_RS14670 e6f1f598d79bb6fcb806d321ed3d47eb 149 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 4 112 5.3E-14 T 23-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RPE_RS14670 e6f1f598d79bb6fcb806d321ed3d47eb 149 ProSitePatterns PS00934 Glyoxalase I signature 1. 5 26 - T 23-04-2016 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|UniPathway: UPA00619 RPE_RS14670 e6f1f598d79bb6fcb806d321ed3d47eb 149 PANTHER PTHR10374:SF8 1 145 4.9E-41 T 23-04-2016 RPE_RS14670 e6f1f598d79bb6fcb806d321ed3d47eb 149 PANTHER PTHR10374 1 145 4.9E-41 T 23-04-2016 RPE_RS14670 e6f1f598d79bb6fcb806d321ed3d47eb 149 SUPERFAMILY SSF54593 1 132 5.37E-29 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RPE_RS14670 e6f1f598d79bb6fcb806d321ed3d47eb 149 Gene3D G3DSA:3.10.180.10 2 132 8.2E-34 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RPE_RS17855 a1cbe493becc0fb95310ab2c273102d2 122 PANTHER PTHR10871 2 122 4.6E-61 T 23-04-2016 RPE_RS17855 a1cbe493becc0fb95310ab2c273102d2 122 ProSitePatterns PS00646 Ribosomal protein S13 signature. 88 101 - T 23-04-2016 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 RPE_RS17855 a1cbe493becc0fb95310ab2c273102d2 122 PIRSF PIRSF002134 1 122 7.1E-44 T 23-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17855 a1cbe493becc0fb95310ab2c273102d2 122 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 115 8.0E-53 T 23-04-2016 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17855 a1cbe493becc0fb95310ab2c273102d2 122 SUPERFAMILY SSF46946 2 121 2.06E-45 T 23-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 RPE_RS17855 a1cbe493becc0fb95310ab2c273102d2 122 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 120 28.284 T 23-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17855 a1cbe493becc0fb95310ab2c273102d2 122 Gene3D G3DSA:4.10.910.10 75 122 8.6E-29 T 23-04-2016 IPR027437 30s ribosomal protein S13, C-terminal RPE_RS17855 a1cbe493becc0fb95310ab2c273102d2 122 Gene3D G3DSA:1.10.8.50 2 72 3.2E-28 T 23-04-2016 RPE_RS17855 a1cbe493becc0fb95310ab2c273102d2 122 Pfam PF00416 Ribosomal protein S13/S18 3 109 2.8E-30 T 23-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS24485 82c9f34d2f460b19b3c96a6342cf1f0c 221 Pfam PF00072 Response regulator receiver domain 3 112 1.3E-25 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS24485 82c9f34d2f460b19b3c96a6342cf1f0c 221 SMART SM00862 145 216 1.5E-20 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS24485 82c9f34d2f460b19b3c96a6342cf1f0c 221 PANTHER PTHR26402:SF279 1 216 1.8E-80 T 23-04-2016 RPE_RS24485 82c9f34d2f460b19b3c96a6342cf1f0c 221 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 215 8.8E-19 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS24485 82c9f34d2f460b19b3c96a6342cf1f0c 221 SMART SM00448 1 112 2.0E-40 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS24485 82c9f34d2f460b19b3c96a6342cf1f0c 221 PANTHER PTHR26402 1 216 1.8E-80 T 23-04-2016 RPE_RS24485 82c9f34d2f460b19b3c96a6342cf1f0c 221 Gene3D G3DSA:3.40.50.2300 1 119 7.6E-38 T 23-04-2016 RPE_RS24485 82c9f34d2f460b19b3c96a6342cf1f0c 221 SUPERFAMILY SSF52172 1 173 2.56E-40 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS24485 82c9f34d2f460b19b3c96a6342cf1f0c 221 Gene3D G3DSA:1.10.10.10 122 215 6.7E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS08750 d1f499ec5b1652e67b9068e021595ffe 384 SUPERFAMILY SSF159594 203 366 2.88E-33 T 23-04-2016 RPE_RS08750 d1f499ec5b1652e67b9068e021595ffe 384 Gene3D G3DSA:3.40.50.10610 201 367 4.3E-45 T 23-04-2016 IPR005586 ABC-type transport auxiliary lipoprotein component RPE_RS08750 d1f499ec5b1652e67b9068e021595ffe 384 PANTHER PTHR36698:SF2 2 308 3.5E-77 T 23-04-2016 RPE_RS08750 d1f499ec5b1652e67b9068e021595ffe 384 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 204 358 2.3E-14 T 23-04-2016 IPR005586 ABC-type transport auxiliary lipoprotein component RPE_RS08750 d1f499ec5b1652e67b9068e021595ffe 384 Pfam PF02470 MlaD protein 40 115 7.7E-12 T 23-04-2016 IPR003399 Mce/MlaD RPE_RS08750 d1f499ec5b1652e67b9068e021595ffe 384 PANTHER PTHR36698 2 308 3.5E-77 T 23-04-2016 RPE_RS14950 915c8a0957f092e7098dd859867a1482 322 SMART SM00937 29 139 4.5E-54 T 23-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 RPE_RS14950 915c8a0957f092e7098dd859867a1482 322 SUPERFAMILY SSF75620 1 308 1.05E-118 T 23-04-2016 RPE_RS14950 915c8a0957f092e7098dd859867a1482 322 Pfam PF03462 PCRF domain 2 164 4.3E-49 T 23-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 RPE_RS14950 915c8a0957f092e7098dd859867a1482 322 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 189 205 - T 23-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RPE_RS14950 915c8a0957f092e7098dd859867a1482 322 Gene3D G3DSA:3.30.160.20 172 250 3.2E-34 T 23-04-2016 IPR014720 Double-stranded RNA-binding domain RPE_RS14950 915c8a0957f092e7098dd859867a1482 322 Gene3D G3DSA:1.20.58.410 1 60 3.1E-9 T 23-04-2016 RPE_RS14950 915c8a0957f092e7098dd859867a1482 322 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 2 309 7.2E-138 T 23-04-2016 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 RPE_RS14950 915c8a0957f092e7098dd859867a1482 322 Pfam PF00472 RF-1 domain 173 282 3.6E-38 T 23-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RPE_RS14950 915c8a0957f092e7098dd859867a1482 322 PANTHER PTHR11075:SF6 1 317 1.7E-151 T 23-04-2016 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 RPE_RS14950 915c8a0957f092e7098dd859867a1482 322 PANTHER PTHR11075 1 317 1.7E-151 T 23-04-2016 RPE_RS12850 1dbf98e2acb05bc642ba93983ad8161e 360 PANTHER PTHR22572:SF117 115 312 3.3E-50 T 23-04-2016 RPE_RS12850 1dbf98e2acb05bc642ba93983ad8161e 360 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 17 340 5.5E-103 T 23-04-2016 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 UniPathway: UPA00973 RPE_RS12850 1dbf98e2acb05bc642ba93983ad8161e 360 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 33 100 2.0E-18 T 23-04-2016 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 UniPathway: UPA00973 RPE_RS12850 1dbf98e2acb05bc642ba93983ad8161e 360 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 14 342 33.399 T 23-04-2016 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 UniPathway: UPA00973 RPE_RS12850 1dbf98e2acb05bc642ba93983ad8161e 360 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 239 274 8.3E-11 T 23-04-2016 IPR001451 Hexapeptide repeat RPE_RS12850 1dbf98e2acb05bc642ba93983ad8161e 360 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 275 306 1.4E-4 T 23-04-2016 IPR001451 Hexapeptide repeat RPE_RS12850 1dbf98e2acb05bc642ba93983ad8161e 360 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 128 162 2.1E-9 T 23-04-2016 IPR001451 Hexapeptide repeat RPE_RS12850 1dbf98e2acb05bc642ba93983ad8161e 360 Gene3D G3DSA:2.160.10.10 280 333 1.6E-13 T 23-04-2016 RPE_RS12850 1dbf98e2acb05bc642ba93983ad8161e 360 Gene3D G3DSA:2.160.10.10 191 279 1.1E-21 T 23-04-2016 RPE_RS12850 1dbf98e2acb05bc642ba93983ad8161e 360 Gene3D G3DSA:2.160.10.10 121 190 7.2E-18 T 23-04-2016 RPE_RS12850 1dbf98e2acb05bc642ba93983ad8161e 360 SUPERFAMILY SSF51161 43 333 5.82E-73 T 23-04-2016 IPR011004 Trimeric LpxA-like RPE_RS12850 1dbf98e2acb05bc642ba93983ad8161e 360 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 137 165 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 RPE_RS12850 1dbf98e2acb05bc642ba93983ad8161e 360 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 119 147 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 RPE_RS12850 1dbf98e2acb05bc642ba93983ad8161e 360 PANTHER PTHR22572 115 312 3.3E-50 T 23-04-2016 RPE_RS04480 b201a3956407a1f3c46c6ca3895651db 427 SUPERFAMILY SSF47203 246 399 7.89E-42 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS04480 b201a3956407a1f3c46c6ca3895651db 427 PANTHER PTHR10909 1 417 4.2E-177 T 23-04-2016 RPE_RS04480 b201a3956407a1f3c46c6ca3895651db 427 PANTHER PTHR10909:SF282 1 417 4.2E-177 T 23-04-2016 RPE_RS04480 b201a3956407a1f3c46c6ca3895651db 427 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 133 235 8.1E-17 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RPE_RS04480 b201a3956407a1f3c46c6ca3895651db 427 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 247 396 1.2E-36 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS04480 b201a3956407a1f3c46c6ca3895651db 427 Gene3D G3DSA:1.10.540.10 1 131 6.1E-29 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS04480 b201a3956407a1f3c46c6ca3895651db 427 Gene3D G3DSA:1.20.140.10 237 402 9.7E-46 T 23-04-2016 RPE_RS04480 b201a3956407a1f3c46c6ca3895651db 427 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 129 1.5E-10 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS04480 b201a3956407a1f3c46c6ca3895651db 427 Gene3D G3DSA:2.40.110.10 132 236 4.3E-34 T 23-04-2016 RPE_RS04480 b201a3956407a1f3c46c6ca3895651db 427 SUPERFAMILY SSF56645 1 260 8.38E-58 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RPE_RS18635 5ad3d41409db5b5d44e91834044673a2 907 TIGRFAM TIGR02779 NHEJ_ligase_lig: DNA ligase D, ligase domain 275 574 5.3E-97 T 23-04-2016 IPR014146 DNA ligase D, ligase domain RPE_RS18635 5ad3d41409db5b5d44e91834044673a2 907 TIGRFAM TIGR02776 NHEJ_ligase_prk: DNA ligase D 284 888 1.5E-222 T 23-04-2016 IPR014143 DNA ligase D RPE_RS18635 5ad3d41409db5b5d44e91834044673a2 907 PANTHER PTHR10459:SF70 269 576 2.9E-128 T 23-04-2016 RPE_RS18635 5ad3d41409db5b5d44e91834044673a2 907 SUPERFAMILY SSF50249 465 574 5.14E-21 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS18635 5ad3d41409db5b5d44e91834044673a2 907 TIGRFAM TIGR02778 ligD_pol: DNA ligase D, polymerase domain 612 861 7.6E-93 T 23-04-2016 IPR014145 DNA ligase D, polymerase domain RPE_RS18635 5ad3d41409db5b5d44e91834044673a2 907 Gene3D G3DSA:3.30.1490.70 268 297 1.0E-17 T 23-04-2016 RPE_RS18635 5ad3d41409db5b5d44e91834044673a2 907 Gene3D G3DSA:3.30.1490.70 416 459 1.0E-17 T 23-04-2016 RPE_RS18635 5ad3d41409db5b5d44e91834044673a2 907 Pfam PF13298 DNA polymerase Ligase (LigD) 38 141 1.1E-38 T 23-04-2016 IPR014144 DNA ligase D, 3'-phosphoesterase domain RPE_RS18635 5ad3d41409db5b5d44e91834044673a2 907 Gene3D G3DSA:3.30.470.30 298 405 2.6E-26 T 23-04-2016 RPE_RS18635 5ad3d41409db5b5d44e91834044673a2 907 Pfam PF01068 ATP dependent DNA ligase domain 288 458 5.2E-22 T 23-04-2016 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 Reactome: REACT_216 RPE_RS18635 5ad3d41409db5b5d44e91834044673a2 907 Gene3D G3DSA:2.40.50.140 463 575 6.7E-37 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS18635 5ad3d41409db5b5d44e91834044673a2 907 TIGRFAM TIGR02777 LigD_PE_dom: DNA ligase D, 3'-phosphoesterase domain 6 163 1.1E-70 T 23-04-2016 IPR014144 DNA ligase D, 3'-phosphoesterase domain RPE_RS18635 5ad3d41409db5b5d44e91834044673a2 907 PANTHER PTHR10459 269 576 2.9E-128 T 23-04-2016 RPE_RS18635 5ad3d41409db5b5d44e91834044673a2 907 Pfam PF04679 ATP dependent DNA ligase C terminal region 474 568 1.8E-21 T 23-04-2016 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 Reactome: REACT_216 RPE_RS18635 5ad3d41409db5b5d44e91834044673a2 907 SUPERFAMILY SSF56091 264 459 1.38E-43 T 23-04-2016 RPE_RS07790 89a6f9a50770a247eca6d0c0f87605fe 254 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 52 71 1.2E-65 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RPE_RS07790 89a6f9a50770a247eca6d0c0f87605fe 254 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 71 91 1.2E-65 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RPE_RS07790 89a6f9a50770a247eca6d0c0f87605fe 254 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 179 199 1.2E-65 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RPE_RS07790 89a6f9a50770a247eca6d0c0f87605fe 254 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 224 249 1.2E-65 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RPE_RS07790 89a6f9a50770a247eca6d0c0f87605fe 254 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 200 221 1.2E-65 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RPE_RS07790 89a6f9a50770a247eca6d0c0f87605fe 254 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 91 110 1.2E-65 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RPE_RS07790 89a6f9a50770a247eca6d0c0f87605fe 254 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 54 250 9.4E-89 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RPE_RS07790 89a6f9a50770a247eca6d0c0f87605fe 254 Pfam PF00813 FliP family 54 246 7.3E-81 T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RPE_RS07790 89a6f9a50770a247eca6d0c0f87605fe 254 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 179 194 - T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RPE_RS07790 89a6f9a50770a247eca6d0c0f87605fe 254 PANTHER PTHR30587 1 252 1.7E-117 T 23-04-2016 RPE_RS07790 89a6f9a50770a247eca6d0c0f87605fe 254 PANTHER PTHR30587:SF0 1 252 1.7E-117 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RPE_RS07790 89a6f9a50770a247eca6d0c0f87605fe 254 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 227 239 - T 23-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RPE_RS07790 89a6f9a50770a247eca6d0c0f87605fe 254 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 50 59 8.3E-26 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RPE_RS07790 89a6f9a50770a247eca6d0c0f87605fe 254 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 110 122 8.3E-26 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RPE_RS07790 89a6f9a50770a247eca6d0c0f87605fe 254 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 150 162 8.3E-26 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RPE_RS07790 89a6f9a50770a247eca6d0c0f87605fe 254 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 122 136 8.3E-26 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RPE_RS07790 89a6f9a50770a247eca6d0c0f87605fe 254 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 172 184 8.3E-26 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RPE_RS07790 89a6f9a50770a247eca6d0c0f87605fe 254 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 240 250 8.3E-26 T 23-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RPE_RS15125 007a2a2f408a2a484d14d02ac556b553 258 Pfam PF04377 Arginine-tRNA-protein transferase, C terminus 107 238 7.2E-35 T 23-04-2016 IPR007472 Arginine-tRNA-protein transferase, C-terminal GO:0004057|GO:0016598 RPE_RS15125 007a2a2f408a2a484d14d02ac556b553 258 SUPERFAMILY SSF55729 80 243 7.68E-21 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS15125 007a2a2f408a2a484d14d02ac556b553 258 PIRSF PIRSF037208 1 252 7.3E-84 T 23-04-2016 IPR017138 Putative arginyl-tRNA--protein transferase, prokaryotic RPE_RS15125 007a2a2f408a2a484d14d02ac556b553 258 PANTHER PTHR21367 18 250 3.5E-78 T 23-04-2016 IPR030700 Arginine-tRNA-protein transferase RPE_RS15125 007a2a2f408a2a484d14d02ac556b553 258 PANTHER PTHR21367:SF0 18 250 3.5E-78 T 23-04-2016 RPE_RS15125 007a2a2f408a2a484d14d02ac556b553 258 Hamap MF_00689 Putative arginyl-tRNA--protein transferase [ate]. 3 247 43.604 T 23-04-2016 IPR017138 Putative arginyl-tRNA--protein transferase, prokaryotic RPE_RS15125 007a2a2f408a2a484d14d02ac556b553 258 Pfam PF04376 Arginine-tRNA-protein transferase, N terminus 17 87 6.3E-16 T 23-04-2016 IPR007471 Arginine-tRNA-protein transferase, N-terminal GO:0004057|GO:0016598 RPE_RS16210 048596363fede150499c51fd55eacd0f 325 Pfam PF14280 Domain of unknown function (DUF4365) 10 130 3.9E-12 T 23-04-2016 IPR025375 Domain of unknown function DUF4365 RPE_RS03210 7bd2422334b15d7e7211eb97cb7ebc81 492 PRINTS PR00344 Bacterial sensor protein C-terminal signature 410 424 2.0E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS03210 7bd2422334b15d7e7211eb97cb7ebc81 492 PRINTS PR00344 Bacterial sensor protein C-terminal signature 463 476 2.0E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS03210 7bd2422334b15d7e7211eb97cb7ebc81 492 PRINTS PR00344 Bacterial sensor protein C-terminal signature 440 458 2.0E-12 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS03210 7bd2422334b15d7e7211eb97cb7ebc81 492 PANTHER PTHR24423 14 20 2.7E-119 T 23-04-2016 RPE_RS03210 7bd2422334b15d7e7211eb97cb7ebc81 492 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 367 477 2.0E-18 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS03210 7bd2422334b15d7e7211eb97cb7ebc81 492 PANTHER PTHR24423 192 481 2.7E-119 T 23-04-2016 RPE_RS03210 7bd2422334b15d7e7211eb97cb7ebc81 492 PANTHER PTHR24423:SF534 14 20 2.7E-119 T 23-04-2016 RPE_RS03210 7bd2422334b15d7e7211eb97cb7ebc81 492 SUPERFAMILY SSF55874 324 477 3.14E-29 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS03210 7bd2422334b15d7e7211eb97cb7ebc81 492 SMART SM00387 366 479 1.8E-28 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS03210 7bd2422334b15d7e7211eb97cb7ebc81 492 PANTHER PTHR24423:SF534 192 481 2.7E-119 T 23-04-2016 RPE_RS03210 7bd2422334b15d7e7211eb97cb7ebc81 492 Gene3D G3DSA:3.30.565.10 333 476 1.0E-29 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS17560 d6dd6a256112685d95de36f241ebf2fd 236 Gene3D G3DSA:3.40.630.30 59 203 5.1E-11 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS17560 d6dd6a256112685d95de36f241ebf2fd 236 Pfam PF00583 Acetyltransferase (GNAT) family 144 202 2.0E-6 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RPE_RS17560 d6dd6a256112685d95de36f241ebf2fd 236 SUPERFAMILY SSF55729 61 204 2.48E-14 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS19965 59a4d33adc39f1765c8362950c7d6ab5 238 SMART SM00862 154 229 2.5E-22 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS19965 59a4d33adc39f1765c8362950c7d6ab5 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 229 1.2E-20 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS19965 59a4d33adc39f1765c8362950c7d6ab5 238 Pfam PF00072 Response regulator receiver domain 6 116 1.3E-28 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS19965 59a4d33adc39f1765c8362950c7d6ab5 238 PANTHER PTHR26402 4 233 5.2E-90 T 23-04-2016 RPE_RS19965 59a4d33adc39f1765c8362950c7d6ab5 238 Gene3D G3DSA:3.40.50.2300 4 126 7.5E-41 T 23-04-2016 RPE_RS19965 59a4d33adc39f1765c8362950c7d6ab5 238 PANTHER PTHR26402:SF528 4 233 5.2E-90 T 23-04-2016 RPE_RS19965 59a4d33adc39f1765c8362950c7d6ab5 238 SUPERFAMILY SSF52172 4 126 9.25E-40 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS19965 59a4d33adc39f1765c8362950c7d6ab5 238 SUPERFAMILY SSF46894 128 230 4.54E-25 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RPE_RS19965 59a4d33adc39f1765c8362950c7d6ab5 238 Gene3D G3DSA:1.10.10.10 132 232 3.0E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS19965 59a4d33adc39f1765c8362950c7d6ab5 238 SMART SM00448 4 115 6.1E-40 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS02045 93044381711c1779e6ef5e20d0c7ef60 66 Pfam PF03966 Trm112p-like protein 14 53 8.6E-11 T 23-04-2016 IPR005651 Uncharacterised protein family UPF0434/Trm112 RPE_RS02045 93044381711c1779e6ef5e20d0c7ef60 66 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 13 66 27.948 T 23-04-2016 IPR005651 Uncharacterised protein family UPF0434/Trm112 RPE_RS02045 93044381711c1779e6ef5e20d0c7ef60 66 SUPERFAMILY SSF158997 13 65 2.09E-20 T 23-04-2016 RPE_RS02045 93044381711c1779e6ef5e20d0c7ef60 66 Gene3D G3DSA:2.20.25.10 20 66 1.1E-25 T 23-04-2016 RPE_RS02045 93044381711c1779e6ef5e20d0c7ef60 66 PANTHER PTHR33505 7 66 1.3E-26 T 23-04-2016 RPE_RS03060 5bd774a172c56d9e66ba74a726ce0d94 383 Gene3D G3DSA:1.20.140.10 219 377 1.2E-48 T 23-04-2016 RPE_RS03060 5bd774a172c56d9e66ba74a726ce0d94 383 PANTHER PTHR10909:SF305 1 373 1.0E-106 T 23-04-2016 RPE_RS03060 5bd774a172c56d9e66ba74a726ce0d94 383 Gene3D G3DSA:2.40.110.10 121 218 7.8E-30 T 23-04-2016 RPE_RS03060 5bd774a172c56d9e66ba74a726ce0d94 383 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 216 2.4E-19 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RPE_RS03060 5bd774a172c56d9e66ba74a726ce0d94 383 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 228 374 8.2E-41 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS03060 5bd774a172c56d9e66ba74a726ce0d94 383 TIGRFAM TIGR03207 cyc_hxne_CoA_dh: cyclohexanecarboxyl-CoA dehydrogenase 5 376 2.4E-225 T 23-04-2016 IPR017620 Cyclohexanecarboxyl-CoA dehydrogenase RPE_RS03060 5bd774a172c56d9e66ba74a726ce0d94 383 Gene3D G3DSA:1.10.540.10 1 117 8.3E-27 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS03060 5bd774a172c56d9e66ba74a726ce0d94 383 SUPERFAMILY SSF47203 226 377 7.41E-42 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS03060 5bd774a172c56d9e66ba74a726ce0d94 383 PANTHER PTHR10909 1 373 1.0E-106 T 23-04-2016 RPE_RS03060 5bd774a172c56d9e66ba74a726ce0d94 383 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 117 5.7E-22 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS03060 5bd774a172c56d9e66ba74a726ce0d94 383 SUPERFAMILY SSF56645 2 239 2.88E-65 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RPE_RS13145 88a75b8c691f13acb33ae241ec632f19 279 Gene3D G3DSA:1.25.40.10 70 255 1.2E-28 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS13145 88a75b8c691f13acb33ae241ec632f19 279 SMART SM00671 82 117 3.1E-5 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS13145 88a75b8c691f13acb33ae241ec632f19 279 SMART SM00671 206 241 13.0 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS13145 88a75b8c691f13acb33ae241ec632f19 279 SMART SM00671 170 205 1.3E-7 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS13145 88a75b8c691f13acb33ae241ec632f19 279 SMART SM00671 130 168 58.0 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS13145 88a75b8c691f13acb33ae241ec632f19 279 Pfam PF08238 Sel1 repeat 207 237 0.052 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS13145 88a75b8c691f13acb33ae241ec632f19 279 Pfam PF08238 Sel1 repeat 170 204 2.1E-7 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS13145 88a75b8c691f13acb33ae241ec632f19 279 Pfam PF08238 Sel1 repeat 135 165 0.29 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS13145 88a75b8c691f13acb33ae241ec632f19 279 Pfam PF08238 Sel1 repeat 82 114 5.8E-4 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS13145 88a75b8c691f13acb33ae241ec632f19 279 PANTHER PTHR11102 73 236 1.8E-27 T 23-04-2016 RPE_RS13145 88a75b8c691f13acb33ae241ec632f19 279 SUPERFAMILY SSF81901 69 240 1.05E-24 T 23-04-2016 RPE_RS09610 a88373604b58b238ceae713a5aa12c18 252 SMART SM00020 19 239 3.8E-9 T 23-04-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 RPE_RS09610 a88373604b58b238ceae713a5aa12c18 252 Pfam PF00089 Trypsin 35 239 1.4E-21 T 23-04-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 RPE_RS09610 a88373604b58b238ceae713a5aa12c18 252 PANTHER PTHR24258 44 248 2.2E-25 T 23-04-2016 RPE_RS09610 a88373604b58b238ceae713a5aa12c18 252 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 47 62 6.5E-10 T 23-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RPE_RS09610 a88373604b58b238ceae713a5aa12c18 252 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 102 116 6.5E-10 T 23-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RPE_RS09610 a88373604b58b238ceae713a5aa12c18 252 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 186 198 6.5E-10 T 23-04-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 RPE_RS09610 a88373604b58b238ceae713a5aa12c18 252 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 57 62 - T 23-04-2016 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 RPE_RS09610 a88373604b58b238ceae713a5aa12c18 252 Gene3D G3DSA:2.40.10.10 41 110 1.6E-13 T 23-04-2016 RPE_RS09610 a88373604b58b238ceae713a5aa12c18 252 Gene3D G3DSA:2.40.10.10 111 243 1.1E-13 T 23-04-2016 RPE_RS09610 a88373604b58b238ceae713a5aa12c18 252 SUPERFAMILY SSF50494 9 245 2.28E-36 T 23-04-2016 IPR009003 Peptidase S1, PA clan RPE_RS16590 56a118a22434d70441ca520f4ee616e7 319 PIRSF PIRSF000446 1 314 4.9E-92 T 23-04-2016 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388|UniPathway: UPA00094 RPE_RS16590 56a118a22434d70441ca520f4ee616e7 319 Gene3D G3DSA:3.40.366.10 200 298 1.3E-67 T 23-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 RPE_RS16590 56a118a22434d70441ca520f4ee616e7 319 Gene3D G3DSA:3.40.366.10 2 125 1.3E-67 T 23-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 RPE_RS16590 56a118a22434d70441ca520f4ee616e7 319 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 2 293 1.1E-95 T 23-04-2016 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 RPE_RS16590 56a118a22434d70441ca520f4ee616e7 319 SUPERFAMILY SSF55048 133 200 7.19E-16 T 23-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 RPE_RS16590 56a118a22434d70441ca520f4ee616e7 319 Gene3D G3DSA:3.30.70.250 128 199 3.4E-25 T 23-04-2016 RPE_RS16590 56a118a22434d70441ca520f4ee616e7 319 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 6 303 1.1E-32 T 23-04-2016 IPR020801 Polyketide synthase, acyl transferase domain RPE_RS16590 56a118a22434d70441ca520f4ee616e7 319 PANTHER PTHR10982 4 306 4.2E-137 T 23-04-2016 RPE_RS16590 56a118a22434d70441ca520f4ee616e7 319 SUPERFAMILY SSF52151 4 131 2.09E-71 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RPE_RS16590 56a118a22434d70441ca520f4ee616e7 319 SUPERFAMILY SSF52151 201 296 2.09E-71 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RPE_RS16590 56a118a22434d70441ca520f4ee616e7 319 Pfam PF00698 Acyl transferase domain 5 279 1.3E-33 T 23-04-2016 IPR014043 Acyl transferase RPE_RS12280 bc6255c9439f8c9e5d3129094c163669 750 SMART SM00490 301 385 1.1E-11 T 23-04-2016 IPR001650 Helicase, C-terminal RPE_RS12280 bc6255c9439f8c9e5d3129094c163669 750 Pfam PF00271 Helicase conserved C-terminal domain 279 384 5.3E-11 T 23-04-2016 IPR001650 Helicase, C-terminal RPE_RS12280 bc6255c9439f8c9e5d3129094c163669 750 Gene3D G3DSA:3.40.50.300 276 385 7.9E-19 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12280 bc6255c9439f8c9e5d3129094c163669 750 Pfam PF00270 DEAD/DEAH box helicase 35 203 3.2E-25 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RPE_RS12280 bc6255c9439f8c9e5d3129094c163669 750 PANTHER PTHR24031:SF122 17 244 8.8E-55 T 23-04-2016 RPE_RS12280 bc6255c9439f8c9e5d3129094c163669 750 PANTHER PTHR24031:SF122 267 401 8.8E-55 T 23-04-2016 RPE_RS12280 bc6255c9439f8c9e5d3129094c163669 750 PANTHER PTHR24031:SF122 418 452 8.8E-55 T 23-04-2016 RPE_RS12280 bc6255c9439f8c9e5d3129094c163669 750 Gene3D G3DSA:3.40.50.300 16 227 7.1E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12280 bc6255c9439f8c9e5d3129094c163669 750 SUPERFAMILY SSF52540 17 211 1.02E-38 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12280 bc6255c9439f8c9e5d3129094c163669 750 SMART SM00487 29 237 5.1E-36 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RPE_RS12280 bc6255c9439f8c9e5d3129094c163669 750 SUPERFAMILY SSF52540 158 388 6.32E-26 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12280 bc6255c9439f8c9e5d3129094c163669 750 PANTHER PTHR24031 17 244 8.8E-55 T 23-04-2016 RPE_RS12280 bc6255c9439f8c9e5d3129094c163669 750 PANTHER PTHR24031 267 401 8.8E-55 T 23-04-2016 RPE_RS12280 bc6255c9439f8c9e5d3129094c163669 750 PANTHER PTHR24031 418 452 8.8E-55 T 23-04-2016 RPE_RS16885 4e6f5fbee4725958701daba37ad97130 227 Pfam PF00027 Cyclic nucleotide-binding domain 24 109 9.1E-18 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RPE_RS16885 4e6f5fbee4725958701daba37ad97130 227 PANTHER PTHR24567 5 201 1.1E-50 T 23-04-2016 RPE_RS16885 4e6f5fbee4725958701daba37ad97130 227 Pfam PF13545 Crp-like helix-turn-helix domain 143 206 6.3E-11 T 23-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RPE_RS16885 4e6f5fbee4725958701daba37ad97130 227 Gene3D G3DSA:2.60.120.10 20 133 3.0E-24 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS16885 4e6f5fbee4725958701daba37ad97130 227 SMART SM00100 5 122 1.3E-12 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RPE_RS16885 4e6f5fbee4725958701daba37ad97130 227 SUPERFAMILY SSF51206 14 138 8.38E-29 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like RPE_RS16885 4e6f5fbee4725958701daba37ad97130 227 PANTHER PTHR24567:SF37 5 201 1.1E-50 T 23-04-2016 RPE_RS16885 4e6f5fbee4725958701daba37ad97130 227 SUPERFAMILY SSF46785 141 203 7.26E-10 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS16885 4e6f5fbee4725958701daba37ad97130 227 Gene3D G3DSA:1.10.10.10 140 206 2.8E-12 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS10525 422699d80e026354ea9a3a7fe0eff492 344 SUPERFAMILY SSF46689 271 321 1.52E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS10525 422699d80e026354ea9a3a7fe0eff492 344 SMART SM00342 235 318 1.6E-28 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RPE_RS10525 422699d80e026354ea9a3a7fe0eff492 344 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 272 314 - T 23-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RPE_RS10525 422699d80e026354ea9a3a7fe0eff492 344 Gene3D G3DSA:1.10.10.60 215 272 1.2E-12 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS10525 422699d80e026354ea9a3a7fe0eff492 344 PANTHER PTHR11019:SF77 45 93 4.7E-49 T 23-04-2016 RPE_RS10525 422699d80e026354ea9a3a7fe0eff492 344 PANTHER PTHR11019:SF77 110 326 4.7E-49 T 23-04-2016 RPE_RS10525 422699d80e026354ea9a3a7fe0eff492 344 PANTHER PTHR11019 45 93 4.7E-49 T 23-04-2016 RPE_RS10525 422699d80e026354ea9a3a7fe0eff492 344 PANTHER PTHR11019 110 326 4.7E-49 T 23-04-2016 RPE_RS10525 422699d80e026354ea9a3a7fe0eff492 344 SUPERFAMILY SSF46689 218 269 1.7E-7 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS10525 422699d80e026354ea9a3a7fe0eff492 344 Pfam PF12833 Helix-turn-helix domain 241 319 1.5E-19 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RPE_RS10525 422699d80e026354ea9a3a7fe0eff492 344 Gene3D G3DSA:1.10.10.60 273 320 1.2E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS10525 422699d80e026354ea9a3a7fe0eff492 344 Pfam PF12852 Cupin 4 203 1.2E-41 T 23-04-2016 IPR032783 AraC-type transcription regulator, ligand-binding domain RPE_RS10100 0578df5cd5d87dc14681e63fc25742c2 108 Gene3D G3DSA:3.40.250.10 4 107 1.9E-21 T 23-04-2016 IPR001763 Rhodanese-like domain RPE_RS10100 0578df5cd5d87dc14681e63fc25742c2 108 SMART SM00450 8 103 2.0E-15 T 23-04-2016 IPR001763 Rhodanese-like domain RPE_RS10100 0578df5cd5d87dc14681e63fc25742c2 108 SUPERFAMILY SSF52821 3 106 3.27E-24 T 23-04-2016 IPR001763 Rhodanese-like domain RPE_RS10100 0578df5cd5d87dc14681e63fc25742c2 108 Pfam PF00581 Rhodanese-like domain 9 100 1.4E-8 T 23-04-2016 IPR001763 Rhodanese-like domain RPE_RS02960 84d2616fd19dba705d199f661b62bd4f 392 PANTHER PTHR30483:SF13 1 375 9.8E-66 T 23-04-2016 RPE_RS02960 84d2616fd19dba705d199f661b62bd4f 392 PANTHER PTHR30483 1 375 9.8E-66 T 23-04-2016 RPE_RS02960 84d2616fd19dba705d199f661b62bd4f 392 Gene3D G3DSA:3.40.50.2300 305 359 4.5E-41 T 23-04-2016 RPE_RS02960 84d2616fd19dba705d199f661b62bd4f 392 Gene3D G3DSA:3.40.50.2300 30 155 4.5E-41 T 23-04-2016 RPE_RS02960 84d2616fd19dba705d199f661b62bd4f 392 SUPERFAMILY SSF53822 34 376 1.05E-77 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RPE_RS02960 84d2616fd19dba705d199f661b62bd4f 392 Gene3D G3DSA:3.40.50.2300 156 304 2.1E-18 T 23-04-2016 RPE_RS02960 84d2616fd19dba705d199f661b62bd4f 392 Pfam PF13458 Periplasmic binding protein 34 371 1.3E-63 T 23-04-2016 IPR028081 Leucine-binding protein domain RPE_RS09350 5c0043737d224aadb9250961fea290a3 285 SUPERFAMILY SSF51717 27 282 2.09E-87 T 23-04-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 RPE_RS09350 5c0043737d224aadb9250961fea290a3 285 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 31 279 7.1E-86 T 23-04-2016 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614|UniPathway: UPA00077 RPE_RS09350 5c0043737d224aadb9250961fea290a3 285 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 31 46 - T 23-04-2016 IPR000489 Pterin-binding domain GO:0042558 RPE_RS09350 5c0043737d224aadb9250961fea290a3 285 Pfam PF00809 Pterin binding enzyme 32 266 8.5E-76 T 23-04-2016 IPR000489 Pterin-binding domain GO:0042558 RPE_RS09350 5c0043737d224aadb9250961fea290a3 285 PANTHER PTHR20941 21 285 9.2E-98 T 23-04-2016 RPE_RS09350 5c0043737d224aadb9250961fea290a3 285 PANTHER PTHR20941:SF1 21 285 9.2E-98 T 23-04-2016 RPE_RS09350 5c0043737d224aadb9250961fea290a3 285 Gene3D G3DSA:3.20.20.20 26 283 2.2E-95 T 23-04-2016 IPR000489 Pterin-binding domain GO:0042558 RPE_RS09350 5c0043737d224aadb9250961fea290a3 285 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 65 78 - T 23-04-2016 IPR000489 Pterin-binding domain GO:0042558 RPE_RS00220 2dccf9038afef0732cf51b21f524d330 566 SMART SM00283 302 560 3.2E-52 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS00220 2dccf9038afef0732cf51b21f524d330 566 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 404 431 8.1E-23 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS00220 2dccf9038afef0732cf51b21f524d330 566 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 7 32 8.1E-23 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS00220 2dccf9038afef0732cf51b21f524d330 566 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 481 510 8.1E-23 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS00220 2dccf9038afef0732cf51b21f524d330 566 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 433 462 8.1E-23 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS00220 2dccf9038afef0732cf51b21f524d330 566 SUPERFAMILY SSF58104 245 271 6.8E-65 T 23-04-2016 RPE_RS00220 2dccf9038afef0732cf51b21f524d330 566 SUPERFAMILY SSF58104 312 559 6.8E-65 T 23-04-2016 RPE_RS00220 2dccf9038afef0732cf51b21f524d330 566 PANTHER PTHR32089:SF40 284 563 6.6E-184 T 23-04-2016 RPE_RS00220 2dccf9038afef0732cf51b21f524d330 566 PANTHER PTHR32089:SF40 182 251 6.6E-184 T 23-04-2016 RPE_RS00220 2dccf9038afef0732cf51b21f524d330 566 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 363 559 7.1E-37 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS00220 2dccf9038afef0732cf51b21f524d330 566 Gene3D G3DSA:1.10.287.950 323 530 3.3E-49 T 23-04-2016 RPE_RS00220 2dccf9038afef0732cf51b21f524d330 566 SMART SM00304 319 372 110.0 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS00220 2dccf9038afef0732cf51b21f524d330 566 SMART SM00304 216 269 0.0012 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS00220 2dccf9038afef0732cf51b21f524d330 566 PANTHER PTHR32089 284 563 6.6E-184 T 23-04-2016 RPE_RS00220 2dccf9038afef0732cf51b21f524d330 566 PANTHER PTHR32089 182 251 6.6E-184 T 23-04-2016 RPE_RS00220 2dccf9038afef0732cf51b21f524d330 566 Pfam PF00672 HAMP domain 197 262 9.8E-9 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS24375 ea84dbec3044a69ecc03b90538933811 399 Gene3D G3DSA:3.90.1150.10 264 398 2.9E-41 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS24375 ea84dbec3044a69ecc03b90538933811 399 Gene3D G3DSA:3.40.640.10 15 263 4.5E-84 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS24375 ea84dbec3044a69ecc03b90538933811 399 PIRSF PIRSF001434 3 399 4.1E-120 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RPE_RS24375 ea84dbec3044a69ecc03b90538933811 399 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 15 397 1.3E-125 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RPE_RS24375 ea84dbec3044a69ecc03b90538933811 399 TIGRFAM TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase 16 396 3.7E-166 T 23-04-2016 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 UniPathway: UPA00051 RPE_RS24375 ea84dbec3044a69ecc03b90538933811 399 PANTHER PTHR11808:SF36 7 399 3.2E-223 T 23-04-2016 RPE_RS24375 ea84dbec3044a69ecc03b90538933811 399 SUPERFAMILY SSF53383 28 398 2.55E-116 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS24375 ea84dbec3044a69ecc03b90538933811 399 PANTHER PTHR11808 7 399 3.2E-223 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RPE_RS23770 b9acb02aaade3e5c83b2a0dec955a9cc 261 PANTHER PTHR23427:SF6 11 234 1.1E-84 T 23-04-2016 RPE_RS23770 b9acb02aaade3e5c83b2a0dec955a9cc 261 Pfam PF02104 SURF1 family 21 235 1.4E-34 T 23-04-2016 IPR002994 Surfeit locus 1/Shy1 GO:0016020 RPE_RS23770 b9acb02aaade3e5c83b2a0dec955a9cc 261 PANTHER PTHR23427 11 234 1.1E-84 T 23-04-2016 RPE_RS06365 6db5a187a2b046e4f187ce500940b6f0 538 Gene3D G3DSA:3.40.50.80 395 537 9.4E-53 T 23-04-2016 RPE_RS06365 6db5a187a2b046e4f187ce500940b6f0 538 Pfam PF04060 Putative Fe-S cluster 98 128 7.0E-5 T 23-04-2016 IPR007202 4Fe-4S domain GO:0051536 RPE_RS06365 6db5a187a2b046e4f187ce500940b6f0 538 Gene3D G3DSA:2.40.30.10 172 220 2.0E-37 T 23-04-2016 RPE_RS06365 6db5a187a2b046e4f187ce500940b6f0 538 Gene3D G3DSA:2.40.30.10 322 394 2.0E-37 T 23-04-2016 RPE_RS06365 6db5a187a2b046e4f187ce500940b6f0 538 PANTHER PTHR19384 167 538 1.1E-139 T 23-04-2016 RPE_RS06365 6db5a187a2b046e4f187ce500940b6f0 538 PANTHER PTHR19384:SF76 167 538 1.1E-139 T 23-04-2016 RPE_RS06365 6db5a187a2b046e4f187ce500940b6f0 538 SUPERFAMILY SSF52343 383 538 4.76E-47 T 23-04-2016 RPE_RS06365 6db5a187a2b046e4f187ce500940b6f0 538 SUPERFAMILY SSF63380 170 384 7.49E-54 T 23-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 RPE_RS06365 6db5a187a2b046e4f187ce500940b6f0 538 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 210 220 1.6E-26 T 23-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RPE_RS06365 6db5a187a2b046e4f187ce500940b6f0 538 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 395 414 1.6E-26 T 23-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RPE_RS06365 6db5a187a2b046e4f187ce500940b6f0 538 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 487 495 1.6E-26 T 23-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RPE_RS06365 6db5a187a2b046e4f187ce500940b6f0 538 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 358 367 1.6E-26 T 23-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RPE_RS06365 6db5a187a2b046e4f187ce500940b6f0 538 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 433 444 1.6E-26 T 23-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RPE_RS06365 6db5a187a2b046e4f187ce500940b6f0 538 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 325 332 1.6E-26 T 23-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RPE_RS06365 6db5a187a2b046e4f187ce500940b6f0 538 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 420 429 1.6E-26 T 23-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RPE_RS06365 6db5a187a2b046e4f187ce500940b6f0 538 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 464 480 1.6E-26 T 23-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RPE_RS06365 6db5a187a2b046e4f187ce500940b6f0 538 Pfam PF00667 FAD binding domain 172 242 6.4E-16 T 23-04-2016 IPR003097 FAD-binding, type 1 GO:0016491|GO:0055114 RPE_RS06365 6db5a187a2b046e4f187ce500940b6f0 538 Pfam PF00667 FAD binding domain 296 362 1.5E-11 T 23-04-2016 IPR003097 FAD-binding, type 1 GO:0016491|GO:0055114 RPE_RS06365 6db5a187a2b046e4f187ce500940b6f0 538 Pfam PF00175 Oxidoreductase NAD-binding domain 396 502 3.6E-17 T 23-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RPE_RS15355 30dae723ca427a3058520b820a2cdfea 115 SUPERFAMILY SSF52833 4 114 2.2E-35 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS15355 30dae723ca427a3058520b820a2cdfea 115 Pfam PF03960 ArsC family 6 111 9.6E-18 T 23-04-2016 IPR006660 Arsenate reductase-like RPE_RS15355 30dae723ca427a3058520b820a2cdfea 115 Gene3D G3DSA:3.40.30.10 3 114 6.6E-43 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS15355 30dae723ca427a3058520b820a2cdfea 115 PANTHER PTHR30041 1 115 7.2E-43 T 23-04-2016 RPE_RS15355 30dae723ca427a3058520b820a2cdfea 115 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 4 111 1.3E-29 T 23-04-2016 IPR006504 Transcriptional regulator Spx/MgsR RPE_RS15355 30dae723ca427a3058520b820a2cdfea 115 PANTHER PTHR30041:SF3 1 115 7.2E-43 T 23-04-2016 RPE_RS10535 2160d673b833f7ec9a3134cb4c96d454 332 Pfam PF01795 MraW methylase family 7 308 3.2E-101 T 23-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RPE_RS10535 2160d673b833f7ec9a3134cb4c96d454 332 PANTHER PTHR11265 7 311 8.8E-143 T 23-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RPE_RS10535 2160d673b833f7ec9a3134cb4c96d454 332 Gene3D G3DSA:3.40.50.150 9 112 2.8E-52 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS10535 2160d673b833f7ec9a3134cb4c96d454 332 Gene3D G3DSA:3.40.50.150 217 310 2.8E-52 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS10535 2160d673b833f7ec9a3134cb4c96d454 332 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 7 308 7.0E-98 T 23-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RPE_RS10535 2160d673b833f7ec9a3134cb4c96d454 332 PANTHER PTHR11265:SF0 7 311 8.8E-143 T 23-04-2016 RPE_RS10535 2160d673b833f7ec9a3134cb4c96d454 332 SUPERFAMILY SSF81799 116 214 3.92E-33 T 23-04-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RPE_RS10535 2160d673b833f7ec9a3134cb4c96d454 332 PIRSF PIRSF004486 4 310 4.0E-101 T 23-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RPE_RS10535 2160d673b833f7ec9a3134cb4c96d454 332 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 9 309 36.864 T 23-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RPE_RS10535 2160d673b833f7ec9a3134cb4c96d454 332 SUPERFAMILY SSF53335 214 308 7.77E-48 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS10535 2160d673b833f7ec9a3134cb4c96d454 332 SUPERFAMILY SSF53335 9 115 7.77E-48 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS10535 2160d673b833f7ec9a3134cb4c96d454 332 Gene3D G3DSA:1.10.150.170 114 216 8.0E-33 T 23-04-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RPE_RS01290 c9efe40a464f2ea7dd8f7bcc4a4eecdd 408 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 152 168 - T 23-04-2016 IPR018201 Beta-ketoacyl synthase, active site RPE_RS01290 c9efe40a464f2ea7dd8f7bcc4a4eecdd 408 SMART SM00825 Beta-ketoacyl synthase 4 408 3.4E-12 T 23-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RPE_RS01290 c9efe40a464f2ea7dd8f7bcc4a4eecdd 408 Gene3D G3DSA:3.40.47.10 6 257 1.2E-57 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS01290 c9efe40a464f2ea7dd8f7bcc4a4eecdd 408 SUPERFAMILY SSF53901 212 406 8.93E-58 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS01290 c9efe40a464f2ea7dd8f7bcc4a4eecdd 408 PANTHER PTHR11712 1 405 3.0E-153 T 23-04-2016 RPE_RS01290 c9efe40a464f2ea7dd8f7bcc4a4eecdd 408 SUPERFAMILY SSF53901 2 251 1.39E-60 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS01290 c9efe40a464f2ea7dd8f7bcc4a4eecdd 408 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 252 362 5.2E-27 T 23-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal RPE_RS01290 c9efe40a464f2ea7dd8f7bcc4a4eecdd 408 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 244 5.4E-40 T 23-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal RPE_RS01290 c9efe40a464f2ea7dd8f7bcc4a4eecdd 408 Gene3D G3DSA:3.40.47.10 261 406 2.0E-44 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS24080 f34a581c21fb3e6ca221e730af3db9cf 352 Pfam PF01757 Acyltransferase family 19 313 1.4E-22 T 23-04-2016 IPR002656 Acyltransferase 3 GO:0016747 RPE_RS17740 f5b571ba1ac4a1dbeb87f134dc673833 510 SUPERFAMILY SSF52096 3 249 5.86E-77 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS17740 f5b571ba1ac4a1dbeb87f134dc673833 510 Gene3D G3DSA:3.90.226.10 254 509 8.4E-99 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS17740 f5b571ba1ac4a1dbeb87f134dc673833 510 PANTHER PTHR22855:SF40 1 510 0.0 T 23-04-2016 RPE_RS17740 f5b571ba1ac4a1dbeb87f134dc673833 510 Pfam PF01039 Carboxyl transferase domain 27 508 7.5E-188 T 23-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RPE_RS17740 f5b571ba1ac4a1dbeb87f134dc673833 510 PANTHER PTHR22855 1 510 0.0 T 23-04-2016 RPE_RS17740 f5b571ba1ac4a1dbeb87f134dc673833 510 Gene3D G3DSA:3.90.226.10 7 249 4.6E-79 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS17740 f5b571ba1ac4a1dbeb87f134dc673833 510 SUPERFAMILY SSF52096 254 510 1.6E-88 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS02240 6e9f53d8aa4a2600ca9addd7821d742f 211 Pfam PF02224 Cytidylate kinase 3 193 6.4E-49 T 23-04-2016 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 RPE_RS02240 6e9f53d8aa4a2600ca9addd7821d742f 211 SUPERFAMILY SSF52540 1 204 8.42E-38 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02240 6e9f53d8aa4a2600ca9addd7821d742f 211 Hamap MF_00238 Cytidylate kinase [cmk]. 1 206 29.191 T 23-04-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 RPE_RS02240 6e9f53d8aa4a2600ca9addd7821d742f 211 TIGRFAM TIGR00017 cmk: cytidylate kinase 1 193 3.0E-47 T 23-04-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 RPE_RS02240 6e9f53d8aa4a2600ca9addd7821d742f 211 PANTHER PTHR21299 1 211 1.9E-37 T 23-04-2016 RPE_RS02240 6e9f53d8aa4a2600ca9addd7821d742f 211 Gene3D G3DSA:3.40.50.300 1 203 6.4E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS09940 e57cd6b68ff89853c22b871729c423a7 372 PANTHER PTHR23264 1 366 1.2E-149 T 23-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein RPE_RS09940 e57cd6b68ff89853c22b871729c423a7 372 Hamap MF_02040 Iron-sulfur cluster carrier protein. 115 363 38.042 T 23-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein RPE_RS09940 e57cd6b68ff89853c22b871729c423a7 372 ProSitePatterns PS01215 Mrp family signature. 226 242 - T 23-04-2016 IPR000808 Mrp, conserved site GO:0005524 RPE_RS09940 e57cd6b68ff89853c22b871729c423a7 372 Pfam PF01883 Domain of unknown function DUF59 6 74 2.0E-16 T 23-04-2016 IPR002744 Domain of unknown function DUF59 RPE_RS09940 e57cd6b68ff89853c22b871729c423a7 372 SUPERFAMILY SSF52540 111 347 7.1E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS09940 e57cd6b68ff89853c22b871729c423a7 372 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 120 362 3.4E-102 T 23-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein RPE_RS09940 e57cd6b68ff89853c22b871729c423a7 372 SUPERFAMILY SSF117916 3 84 5.89E-12 T 23-04-2016 RPE_RS09940 e57cd6b68ff89853c22b871729c423a7 372 Gene3D G3DSA:3.40.50.300 113 362 2.9E-106 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18935 b06e17f335d30816aa27ccd299cb64c5 410 Gene3D G3DSA:3.40.50.2300 41 238 5.4E-47 T 23-04-2016 RPE_RS18935 b06e17f335d30816aa27ccd299cb64c5 410 PANTHER PTHR30483 10 407 9.5E-195 T 23-04-2016 RPE_RS18935 b06e17f335d30816aa27ccd299cb64c5 410 PANTHER PTHR30483:SF11 10 407 9.5E-195 T 23-04-2016 RPE_RS18935 b06e17f335d30816aa27ccd299cb64c5 410 SUPERFAMILY SSF53822 42 401 1.18E-71 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RPE_RS18935 b06e17f335d30816aa27ccd299cb64c5 410 Pfam PF13458 Periplasmic binding protein 42 392 5.5E-58 T 23-04-2016 IPR028081 Leucine-binding protein domain RPE_RS09885 da608c07720429797257d3dea4dbb3fc 267 TIGRFAM TIGR02454 ECF_T_CbiQ: cobalt ECF transporter T component CbiQ 33 228 3.1E-41 T 23-04-2016 IPR012809 Cobalt ECF transporter T component CbiQ GO:0005887|GO:0006824|GO:0043190 RPE_RS09885 da608c07720429797257d3dea4dbb3fc 267 PANTHER PTHR34857 8 267 1.6E-36 T 23-04-2016 RPE_RS09885 da608c07720429797257d3dea4dbb3fc 267 Pfam PF02361 Cobalt transport protein 29 232 1.1E-28 T 23-04-2016 IPR003339 ABC/ECF transporter, transmembrane component RPE_RS09385 4e8d6df71c10ac906c4bfce2fe67676e 284 PANTHER PTHR35333:SF2 1 283 2.6E-100 T 23-04-2016 RPE_RS09385 4e8d6df71c10ac906c4bfce2fe67676e 284 Pfam PF13354 Beta-lactamase enzyme family 46 255 9.8E-36 T 23-04-2016 RPE_RS09385 4e8d6df71c10ac906c4bfce2fe67676e 284 SUPERFAMILY SSF56601 27 279 4.51E-67 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS09385 4e8d6df71c10ac906c4bfce2fe67676e 284 Gene3D G3DSA:3.40.710.10 27 282 3.0E-90 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS09385 4e8d6df71c10ac906c4bfce2fe67676e 284 PANTHER PTHR35333 1 283 2.6E-100 T 23-04-2016 RPE_RS09385 4e8d6df71c10ac906c4bfce2fe67676e 284 PRINTS PR00118 Beta-lactamase class A signature 137 161 4.4E-45 T 23-04-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 RPE_RS09385 4e8d6df71c10ac906c4bfce2fe67676e 284 PRINTS PR00118 Beta-lactamase class A signature 199 214 4.4E-45 T 23-04-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 RPE_RS09385 4e8d6df71c10ac906c4bfce2fe67676e 284 PRINTS PR00118 Beta-lactamase class A signature 163 188 4.4E-45 T 23-04-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 RPE_RS09385 4e8d6df71c10ac906c4bfce2fe67676e 284 PRINTS PR00118 Beta-lactamase class A signature 216 231 4.4E-45 T 23-04-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 RPE_RS09385 4e8d6df71c10ac906c4bfce2fe67676e 284 PRINTS PR00118 Beta-lactamase class A signature 27 51 4.4E-45 T 23-04-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 RPE_RS09385 4e8d6df71c10ac906c4bfce2fe67676e 284 PRINTS PR00118 Beta-lactamase class A signature 58 75 4.4E-45 T 23-04-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 RPE_RS09385 4e8d6df71c10ac906c4bfce2fe67676e 284 PRINTS PR00118 Beta-lactamase class A signature 101 126 4.4E-45 T 23-04-2016 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 RPE_RS08460 78d894bd4fb17b6aa5d0edb23db50298 233 Gene3D G3DSA:1.10.357.10 11 209 4.4E-28 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RPE_RS08460 78d894bd4fb17b6aa5d0edb23db50298 233 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 2.9E-8 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS08460 78d894bd4fb17b6aa5d0edb23db50298 233 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 2.9E-8 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS08460 78d894bd4fb17b6aa5d0edb23db50298 233 ProSitePatterns PS01081 TetR-type HTH domain signature. 27 57 - T 23-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RPE_RS08460 78d894bd4fb17b6aa5d0edb23db50298 233 PANTHER PTHR30055 1 179 9.8E-31 T 23-04-2016 RPE_RS08460 78d894bd4fb17b6aa5d0edb23db50298 233 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 61 1.6E-14 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS08460 78d894bd4fb17b6aa5d0edb23db50298 233 SUPERFAMILY SSF46689 2 72 5.99E-17 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS08460 78d894bd4fb17b6aa5d0edb23db50298 233 PANTHER PTHR30055:SF18 1 179 9.8E-31 T 23-04-2016 RPE_RS05875 946cafe91a27099a3f4b63773156dcc7 143 PANTHER PTHR36307 12 143 2.1E-21 T 23-04-2016 RPE_RS05875 946cafe91a27099a3f4b63773156dcc7 143 Pfam PF13144 Chaperone for flagella basal body P-ring formation 54 140 9.7E-18 T 23-04-2016 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal RPE_RS05875 946cafe91a27099a3f4b63773156dcc7 143 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 13 141 1.0E-28 T 23-04-2016 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal RPE_RS09420 c81033bfcff16bc079e5a44a36ba6bc8 615 SMART SM00091 204 270 6.5E-7 T 23-04-2016 IPR000014 PAS domain RPE_RS09420 c81033bfcff16bc079e5a44a36ba6bc8 615 SUPERFAMILY SSF55874 411 581 7.07E-48 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS09420 c81033bfcff16bc079e5a44a36ba6bc8 615 SMART SM00388 353 422 9.8E-21 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS09420 c81033bfcff16bc079e5a44a36ba6bc8 615 SMART SM00387 468 580 1.7E-38 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS09420 c81033bfcff16bc079e5a44a36ba6bc8 615 PRINTS PR00344 Bacterial sensor protein C-terminal signature 564 577 9.2E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS09420 c81033bfcff16bc079e5a44a36ba6bc8 615 PRINTS PR00344 Bacterial sensor protein C-terminal signature 523 533 9.2E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS09420 c81033bfcff16bc079e5a44a36ba6bc8 615 PRINTS PR00344 Bacterial sensor protein C-terminal signature 540 558 9.2E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS09420 c81033bfcff16bc079e5a44a36ba6bc8 615 PRINTS PR00344 Bacterial sensor protein C-terminal signature 505 519 9.2E-15 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS09420 c81033bfcff16bc079e5a44a36ba6bc8 615 Gene3D G3DSA:3.30.565.10 409 579 1.3E-45 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS09420 c81033bfcff16bc079e5a44a36ba6bc8 615 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 468 578 9.0E-27 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS09420 c81033bfcff16bc079e5a44a36ba6bc8 615 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 201 340 8.0E-11 T 23-04-2016 IPR000014 PAS domain RPE_RS09420 c81033bfcff16bc079e5a44a36ba6bc8 615 SUPERFAMILY SSF47384 339 423 5.49E-21 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS09420 c81033bfcff16bc079e5a44a36ba6bc8 615 Gene3D G3DSA:3.30.450.20 207 346 3.4E-24 T 23-04-2016 RPE_RS09420 c81033bfcff16bc079e5a44a36ba6bc8 615 PANTHER PTHR24423 202 589 4.1E-112 T 23-04-2016 RPE_RS09420 c81033bfcff16bc079e5a44a36ba6bc8 615 PANTHER PTHR24423 11 23 4.1E-112 T 23-04-2016 RPE_RS09420 c81033bfcff16bc079e5a44a36ba6bc8 615 SUPERFAMILY SSF55785 197 331 1.35E-13 T 23-04-2016 IPR000014 PAS domain RPE_RS09420 c81033bfcff16bc079e5a44a36ba6bc8 615 Gene3D G3DSA:1.10.287.130 347 408 1.9E-20 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS09420 c81033bfcff16bc079e5a44a36ba6bc8 615 Pfam PF00512 His Kinase A (phospho-acceptor) domain 353 422 4.1E-19 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS20190 2e80c3f95eb6bb1daf2fd70c05f3d211 703 PANTHER PTHR33375:SF2 4 695 2.0E-264 T 23-04-2016 RPE_RS20190 2e80c3f95eb6bb1daf2fd70c05f3d211 703 SUPERFAMILY SSF109709 109 204 2.22E-17 T 23-04-2016 RPE_RS20190 2e80c3f95eb6bb1daf2fd70c05f3d211 703 PANTHER PTHR33375 4 695 2.0E-264 T 23-04-2016 RPE_RS20190 2e80c3f95eb6bb1daf2fd70c05f3d211 703 SUPERFAMILY SSF110849 14 114 7.5E-11 T 23-04-2016 IPR003115 ParB/Sulfiredoxin RPE_RS20190 2e80c3f95eb6bb1daf2fd70c05f3d211 703 Gene3D G3DSA:3.90.1530.10 13 115 1.8E-9 T 23-04-2016 RPE_RS20190 2e80c3f95eb6bb1daf2fd70c05f3d211 703 Pfam PF02195 ParB-like nuclease domain 15 113 1.7E-7 T 23-04-2016 IPR003115 ParB/Sulfiredoxin RPE_RS20190 2e80c3f95eb6bb1daf2fd70c05f3d211 703 SMART SM00470 13 114 1.1E-4 T 23-04-2016 IPR003115 ParB/Sulfiredoxin RPE_RS06325 e4790fc35934f5a1eb23e76d8a367de5 1151 PANTHER PTHR41259:SF1 1 681 7.7E-12 T 23-04-2016 RPE_RS06325 e4790fc35934f5a1eb23e76d8a367de5 1151 PANTHER PTHR41259:SF1 823 1137 7.7E-12 T 23-04-2016 RPE_RS06325 e4790fc35934f5a1eb23e76d8a367de5 1151 SUPERFAMILY SSF52540 204 235 1.6E-16 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS06325 e4790fc35934f5a1eb23e76d8a367de5 1151 SUPERFAMILY SSF52540 2 145 1.6E-16 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS06325 e4790fc35934f5a1eb23e76d8a367de5 1151 SUPERFAMILY SSF52540 1042 1138 1.6E-16 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS06325 e4790fc35934f5a1eb23e76d8a367de5 1151 Pfam PF13514 AAA domain 2 204 4.5E-65 T 23-04-2016 RPE_RS06325 e4790fc35934f5a1eb23e76d8a367de5 1151 Gene3D G3DSA:3.40.1140.10 2 96 2.6E-13 T 23-04-2016 RPE_RS06325 e4790fc35934f5a1eb23e76d8a367de5 1151 Gene3D G3DSA:3.40.1140.10 1067 1135 2.6E-13 T 23-04-2016 RPE_RS06325 e4790fc35934f5a1eb23e76d8a367de5 1151 PANTHER PTHR41259 1 681 7.7E-12 T 23-04-2016 RPE_RS06325 e4790fc35934f5a1eb23e76d8a367de5 1151 PANTHER PTHR41259 823 1137 7.7E-12 T 23-04-2016 RPE_RS01620 32d893e624d665816d7e39e6b371a358 235 PANTHER PTHR34387:SF1 7 235 3.5E-55 T 23-04-2016 RPE_RS01620 32d893e624d665816d7e39e6b371a358 235 Pfam PF04402 Protein of unknown function (DUF541) 31 229 4.3E-53 T 23-04-2016 IPR007497 Protein of unknown function DUF541 RPE_RS01620 32d893e624d665816d7e39e6b371a358 235 PANTHER PTHR34387 7 235 3.5E-55 T 23-04-2016 RPE_RS10675 aff39d79949136e8b163c8611b710485 536 PANTHER PTHR10668 6 531 8.9E-207 T 23-04-2016 RPE_RS10675 aff39d79949136e8b163c8611b710485 536 PANTHER PTHR10668:SF83 6 531 8.9E-207 T 23-04-2016 RPE_RS10675 aff39d79949136e8b163c8611b710485 536 SUPERFAMILY SSF51905 1 409 2.07E-49 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS10675 aff39d79949136e8b163c8611b710485 536 Pfam PF01593 Flavin containing amine oxidoreductase 15 329 9.9E-17 T 23-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 RPE_RS10675 aff39d79949136e8b163c8611b710485 536 Gene3D G3DSA:3.50.50.60 219 317 2.3E-32 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS10675 aff39d79949136e8b163c8611b710485 536 Gene3D G3DSA:3.50.50.60 134 135 2.3E-32 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS10675 aff39d79949136e8b163c8611b710485 536 Gene3D G3DSA:3.50.50.60 5 56 2.3E-32 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS12055 2eb53b5db83aa37836c8046d5a9aabff 214 SUPERFAMILY SSF55874 81 212 1.15E-12 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS12055 2eb53b5db83aa37836c8046d5a9aabff 214 Gene3D G3DSA:3.30.565.10 117 212 9.3E-7 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS12055 2eb53b5db83aa37836c8046d5a9aabff 214 Pfam PF07568 Histidine kinase 21 89 3.1E-7 T 23-04-2016 IPR011495 Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain RPE_RS22550 c9974564eb82627f185e774fe1330088 98 SUPERFAMILY SSF54862 44 96 2.35E-10 T 23-04-2016 RPE_RS22550 c9974564eb82627f185e774fe1330088 98 PANTHER PTHR10617 9 98 3.3E-13 T 23-04-2016 RPE_RS22550 c9974564eb82627f185e774fe1330088 98 Gene3D G3DSA:3.30.70.20 44 73 1.2E-4 T 23-04-2016 RPE_RS22550 c9974564eb82627f185e774fe1330088 98 PANTHER PTHR10617:SF119 9 98 3.3E-13 T 23-04-2016 RPE_RS22550 c9974564eb82627f185e774fe1330088 98 PIRSF PIRSF036548 3 98 3.1E-42 T 23-04-2016 IPR012206 Ferredoxin-like, FixX GO:0005506 RPE_RS22550 c9974564eb82627f185e774fe1330088 98 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 43 92 2.3E-7 T 23-04-2016 IPR007859 ETF-QO/FixX GO:0051536|GO:0055114 RPE_RS17470 f314502cc9ec9f752f554b5380da4b50 261 Pfam PF00005 ABC transporter 21 169 3.2E-27 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS17470 f314502cc9ec9f752f554b5380da4b50 261 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS17470 f314502cc9ec9f752f554b5380da4b50 261 SUPERFAMILY SSF52540 5 230 5.22E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS17470 f314502cc9ec9f752f554b5380da4b50 261 PANTHER PTHR24220:SF582 6 241 5.7E-84 T 23-04-2016 RPE_RS17470 f314502cc9ec9f752f554b5380da4b50 261 PANTHER PTHR24220 6 241 5.7E-84 T 23-04-2016 RPE_RS17470 f314502cc9ec9f752f554b5380da4b50 261 Gene3D G3DSA:3.40.50.300 3 230 6.4E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS17470 f314502cc9ec9f752f554b5380da4b50 261 SMART SM00382 29 217 9.7E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS08520 009254c7725bbd4994b208bbaae83f18 414 Gene3D G3DSA:3.40.50.2300 26 166 9.6E-44 T 23-04-2016 RPE_RS08520 009254c7725bbd4994b208bbaae83f18 414 Gene3D G3DSA:3.40.50.2300 326 380 9.6E-44 T 23-04-2016 RPE_RS08520 009254c7725bbd4994b208bbaae83f18 414 PANTHER PTHR24059:SF3 1 413 1.7E-278 T 23-04-2016 RPE_RS08520 009254c7725bbd4994b208bbaae83f18 414 SUPERFAMILY SSF53822 29 412 2.94E-73 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RPE_RS08520 009254c7725bbd4994b208bbaae83f18 414 PANTHER PTHR24059 1 413 1.7E-278 T 23-04-2016 RPE_RS08520 009254c7725bbd4994b208bbaae83f18 414 Gene3D G3DSA:3.40.50.2300 179 325 1.3E-22 T 23-04-2016 RPE_RS08520 009254c7725bbd4994b208bbaae83f18 414 Pfam PF13458 Periplasmic binding protein 30 379 2.4E-50 T 23-04-2016 IPR028081 Leucine-binding protein domain RPE_RS21010 eee6e24345e9c55c9fcc7f29891242e7 451 Gene3D G3DSA:3.40.50.150 101 169 1.3E-4 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS21010 eee6e24345e9c55c9fcc7f29891242e7 451 Gene3D G3DSA:3.40.50.150 259 325 1.3E-4 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS21010 eee6e24345e9c55c9fcc7f29891242e7 451 SUPERFAMILY SSF53335 106 171 4.22E-7 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS21010 eee6e24345e9c55c9fcc7f29891242e7 451 SUPERFAMILY SSF53335 261 321 4.22E-7 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS22215 dd1fa5d8c87cc7dd56455e92b80a4071 138 SUPERFAMILY SSF103084 23 98 4.97E-11 T 23-04-2016 IPR008822 Crossover junction endodeoxyribonuclease, RusA-like GO:0000287|GO:0006281|GO:0006310 RPE_RS22215 dd1fa5d8c87cc7dd56455e92b80a4071 138 Pfam PF05866 Endodeoxyribonuclease RusA 24 99 2.1E-10 T 23-04-2016 IPR008822 Crossover junction endodeoxyribonuclease, RusA-like GO:0000287|GO:0006281|GO:0006310 RPE_RS22215 dd1fa5d8c87cc7dd56455e92b80a4071 138 Gene3D G3DSA:3.30.1330.70 24 101 2.6E-11 T 23-04-2016 IPR008822 Crossover junction endodeoxyribonuclease, RusA-like GO:0000287|GO:0006281|GO:0006310 RPE_RS02930 c1259850c3acb76e986632904d2b4d24 370 PANTHER PTHR11695 128 370 1.6E-104 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RPE_RS02930 c1259850c3acb76e986632904d2b4d24 370 PANTHER PTHR11695 15 108 1.6E-104 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RPE_RS02930 c1259850c3acb76e986632904d2b4d24 370 SMART SM00829 12 368 1.6E-6 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RPE_RS02930 c1259850c3acb76e986632904d2b4d24 370 SUPERFAMILY SSF50129 1 193 2.89E-56 T 23-04-2016 IPR011032 GroES-like RPE_RS02930 c1259850c3acb76e986632904d2b4d24 370 Gene3D G3DSA:3.40.50.720 190 311 3.3E-32 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS02930 c1259850c3acb76e986632904d2b4d24 370 SUPERFAMILY SSF50129 321 369 2.73E-7 T 23-04-2016 IPR011032 GroES-like RPE_RS02930 c1259850c3acb76e986632904d2b4d24 370 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 153 1.5E-26 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RPE_RS02930 c1259850c3acb76e986632904d2b4d24 370 Pfam PF00107 Zinc-binding dehydrogenase 199 316 1.0E-19 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RPE_RS02930 c1259850c3acb76e986632904d2b4d24 370 SUPERFAMILY SSF51735 159 333 9.6E-36 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS02930 c1259850c3acb76e986632904d2b4d24 370 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 23-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 RPE_RS02930 c1259850c3acb76e986632904d2b4d24 370 Gene3D G3DSA:3.90.180.10 2 189 5.3E-56 T 23-04-2016 IPR011032 GroES-like RPE_RS02930 c1259850c3acb76e986632904d2b4d24 370 PANTHER PTHR11695:SF571 128 370 1.6E-104 T 23-04-2016 RPE_RS02930 c1259850c3acb76e986632904d2b4d24 370 PANTHER PTHR11695:SF571 15 108 1.6E-104 T 23-04-2016 RPE_RS20470 d05b36b7832a032867514a7e432276da 466 Gene3D G3DSA:3.40.50.1220 296 466 5.8E-86 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RPE_RS20470 d05b36b7832a032867514a7e432276da 466 PANTHER PTHR10160 1 466 8.8E-257 T 23-04-2016 RPE_RS20470 d05b36b7832a032867514a7e432276da 466 SUPERFAMILY SSF52467 296 466 3.27E-75 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RPE_RS20470 d05b36b7832a032867514a7e432276da 466 PANTHER PTHR10160:SF24 1 466 8.8E-257 T 23-04-2016 RPE_RS20470 d05b36b7832a032867514a7e432276da 466 Pfam PF02233 NAD(P) transhydrogenase beta subunit 8 464 5.7E-189 T 23-04-2016 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 RPE_RS20470 d05b36b7832a032867514a7e432276da 466 PIRSF PIRSF000204 1 466 1.1E-210 T 23-04-2016 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 RPE_RS20620 c99a21fd2335d508a2b5882659239254 424 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 11 137 9.1E-6 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS20620 c99a21fd2335d508a2b5882659239254 424 PANTHER PTHR10909 49 420 1.8E-158 T 23-04-2016 RPE_RS20620 c99a21fd2335d508a2b5882659239254 424 PANTHER PTHR10909 2 32 1.8E-158 T 23-04-2016 RPE_RS20620 c99a21fd2335d508a2b5882659239254 424 SUPERFAMILY SSF56645 28 269 1.03E-49 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RPE_RS20620 c99a21fd2335d508a2b5882659239254 424 SUPERFAMILY SSF47203 259 419 1.77E-42 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS20620 c99a21fd2335d508a2b5882659239254 424 Gene3D G3DSA:2.40.110.10 150 252 2.7E-31 T 23-04-2016 RPE_RS20620 c99a21fd2335d508a2b5882659239254 424 PANTHER PTHR10909:SF303 49 420 1.8E-158 T 23-04-2016 RPE_RS20620 c99a21fd2335d508a2b5882659239254 424 PANTHER PTHR10909:SF303 2 32 1.8E-158 T 23-04-2016 RPE_RS20620 c99a21fd2335d508a2b5882659239254 424 Gene3D G3DSA:1.10.540.10 2 137 1.8E-19 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS20620 c99a21fd2335d508a2b5882659239254 424 Gene3D G3DSA:1.20.140.10 253 417 2.7E-44 T 23-04-2016 RPE_RS20620 c99a21fd2335d508a2b5882659239254 424 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 261 412 1.6E-38 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS20620 c99a21fd2335d508a2b5882659239254 424 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 151 247 6.5E-21 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RPE_RS23465 83dd08357dd7c124924f59fd1c1fef5f 224 Gene3D G3DSA:1.10.357.10 16 199 1.2E-28 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RPE_RS23465 83dd08357dd7c124924f59fd1c1fef5f 224 SUPERFAMILY SSF48498 91 190 1.65E-5 T 23-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RPE_RS23465 83dd08357dd7c124924f59fd1c1fef5f 224 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 4.9E-7 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS23465 83dd08357dd7c124924f59fd1c1fef5f 224 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 4.9E-7 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS23465 83dd08357dd7c124924f59fd1c1fef5f 224 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 66 1.5E-13 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS23465 83dd08357dd7c124924f59fd1c1fef5f 224 PANTHER PTHR30055:SF14 3 216 2.5E-83 T 23-04-2016 RPE_RS23465 83dd08357dd7c124924f59fd1c1fef5f 224 PANTHER PTHR30055 3 216 2.5E-83 T 23-04-2016 RPE_RS23465 83dd08357dd7c124924f59fd1c1fef5f 224 SUPERFAMILY SSF46689 12 89 4.19E-14 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS08965 2d8333b1ab995c31cad414f812fd70a0 525 Gene3D G3DSA:3.40.50.980 176 331 5.4E-41 T 23-04-2016 RPE_RS08965 2d8333b1ab995c31cad414f812fd70a0 525 Pfam PF13193 AMP-binding enzyme C-terminal domain 431 506 6.0E-23 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RPE_RS08965 2d8333b1ab995c31cad414f812fd70a0 525 Gene3D G3DSA:3.30.300.30 417 517 2.7E-35 T 23-04-2016 RPE_RS08965 2d8333b1ab995c31cad414f812fd70a0 525 SUPERFAMILY SSF56801 7 517 6.67E-154 T 23-04-2016 RPE_RS08965 2d8333b1ab995c31cad414f812fd70a0 525 Pfam PF00501 AMP-binding enzyme 17 422 1.3E-100 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS08965 2d8333b1ab995c31cad414f812fd70a0 525 Gene3D G3DSA:2.30.38.10 340 412 5.2E-25 T 23-04-2016 RPE_RS08965 2d8333b1ab995c31cad414f812fd70a0 525 PANTHER PTHR24096 8 514 2.3E-165 T 23-04-2016 RPE_RS08965 2d8333b1ab995c31cad414f812fd70a0 525 Gene3D G3DSA:3.40.50.980 9 175 7.3E-37 T 23-04-2016 RPE_RS13280 fdb7ca87567f69695e581e2b0f96ceb8 4161 SMART SM00912 130 247 1.6E-28 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal RPE_RS13280 fdb7ca87567f69695e581e2b0f96ceb8 4161 Pfam PF05860 haemagglutination activity domain 142 244 8.6E-18 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal RPE_RS13280 fdb7ca87567f69695e581e2b0f96ceb8 4161 Pfam PF12545 Filamentous haemagglutinin family outer membrane protein 3944 4054 1.9E-39 T 23-04-2016 IPR021026 Filamentous haemagglutinin family outer membrane protein, domain of unknown function DUF3739 RPE_RS13280 fdb7ca87567f69695e581e2b0f96ceb8 4161 SUPERFAMILY SSF51126 473 498 3.14E-32 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor RPE_RS13280 fdb7ca87567f69695e581e2b0f96ceb8 4161 SUPERFAMILY SSF51126 138 414 3.14E-32 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor RPE_RS13280 fdb7ca87567f69695e581e2b0f96ceb8 4161 PANTHER PTHR12338:SF6 293 3867 0.0 T 23-04-2016 RPE_RS13280 fdb7ca87567f69695e581e2b0f96ceb8 4161 PANTHER PTHR12338:SF6 73 277 0.0 T 23-04-2016 RPE_RS13280 fdb7ca87567f69695e581e2b0f96ceb8 4161 PANTHER PTHR12338 293 3867 0.0 T 23-04-2016 RPE_RS13280 fdb7ca87567f69695e581e2b0f96ceb8 4161 PANTHER PTHR12338 73 277 0.0 T 23-04-2016 RPE_RS13280 fdb7ca87567f69695e581e2b0f96ceb8 4161 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 167 243 8.8E-22 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal RPE_RS00835 d6be4a7d9e67ce838806754570ba2df7 291 PANTHER PTHR12715 4 254 8.3E-73 T 23-04-2016 RPE_RS00835 d6be4a7d9e67ce838806754570ba2df7 291 Pfam PF00892 EamA-like transporter family 149 277 7.2E-7 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RPE_RS00835 d6be4a7d9e67ce838806754570ba2df7 291 Pfam PF00892 EamA-like transporter family 8 136 1.3E-15 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RPE_RS00835 d6be4a7d9e67ce838806754570ba2df7 291 PANTHER PTHR12715:SF7 4 254 8.3E-73 T 23-04-2016 RPE_RS00835 d6be4a7d9e67ce838806754570ba2df7 291 SUPERFAMILY SSF103481 44 139 1.05E-11 T 23-04-2016 RPE_RS04005 99a4e09ab17157fe1f6148263a046613 200 Gene3D G3DSA:3.30.1130.10 74 198 5.1E-53 T 23-04-2016 RPE_RS04005 99a4e09ab17157fe1f6148263a046613 200 SUPERFAMILY SSF55620 9 199 1.19E-73 T 23-04-2016 RPE_RS04005 99a4e09ab17157fe1f6148263a046613 200 Pfam PF01227 GTP cyclohydrolase I 21 197 8.6E-71 T 23-04-2016 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RPE_RS04005 99a4e09ab17157fe1f6148263a046613 200 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 16 199 37.195 T 23-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RPE_RS04005 99a4e09ab17157fe1f6148263a046613 200 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 126 136 - T 23-04-2016 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RPE_RS04005 99a4e09ab17157fe1f6148263a046613 200 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 78 94 - T 23-04-2016 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RPE_RS04005 99a4e09ab17157fe1f6148263a046613 200 PANTHER PTHR11109 18 195 2.9E-96 T 23-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RPE_RS04005 99a4e09ab17157fe1f6148263a046613 200 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 21 197 1.5E-63 T 23-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RPE_RS04005 99a4e09ab17157fe1f6148263a046613 200 Gene3D G3DSA:1.10.286.10 16 67 3.0E-21 T 23-04-2016 RPE_RS08060 b95fef06b1f73fc394f02473aac69a2e 409 SUPERFAMILY SSF53659 1 402 8.45E-151 T 23-04-2016 RPE_RS08060 b95fef06b1f73fc394f02473aac69a2e 409 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 5 394 4.6E-73 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RPE_RS08060 b95fef06b1f73fc394f02473aac69a2e 409 TIGRFAM TIGR00127 nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent 3 402 2.1E-206 T 23-04-2016 IPR004790 Isocitrate dehydrogenase NADP-dependent GO:0004450|GO:0006102|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 RPE_RS08060 b95fef06b1f73fc394f02473aac69a2e 409 Gene3D G3DSA:3.40.718.10 3 402 2.6E-175 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RPE_RS08060 b95fef06b1f73fc394f02473aac69a2e 409 PANTHER PTHR11822 1 407 0.0 T 23-04-2016 IPR004790 Isocitrate dehydrogenase NADP-dependent GO:0004450|GO:0006102|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 RPE_RS08060 b95fef06b1f73fc394f02473aac69a2e 409 SMART SM01329 9 394 1.1E-129 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RPE_RS08060 b95fef06b1f73fc394f02473aac69a2e 409 PIRSF PIRSF000108 1 405 2.9E-223 T 23-04-2016 IPR004790 Isocitrate dehydrogenase NADP-dependent GO:0004450|GO:0006102|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 RPE_RS08060 b95fef06b1f73fc394f02473aac69a2e 409 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 269 288 - T 23-04-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 RPE_RS08330 8408af4d5b04d3d5a017beaaf02a6768 260 PANTHER PTHR10992:SF861 11 259 5.3E-58 T 23-04-2016 RPE_RS08330 8408af4d5b04d3d5a017beaaf02a6768 260 PANTHER PTHR10992 11 259 5.3E-58 T 23-04-2016 RPE_RS08330 8408af4d5b04d3d5a017beaaf02a6768 260 SUPERFAMILY SSF53474 1 258 1.75E-62 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS08330 8408af4d5b04d3d5a017beaaf02a6768 260 Pfam PF00561 alpha/beta hydrolase fold 42 245 7.8E-22 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS08330 8408af4d5b04d3d5a017beaaf02a6768 260 TIGRFAM TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase 14 258 4.0E-84 T 23-04-2016 IPR026968 3-oxoadipate enol-lactonase 1/2 GO:0042952|GO:0047570 KEGG: 00362+3.1.1.24|MetaCyc: PWY-6185|UniPathway: UPA00157 RPE_RS08330 8408af4d5b04d3d5a017beaaf02a6768 260 PRINTS PR00111 Alpha/beta hydrolase fold signature 105 118 1.9E-9 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS08330 8408af4d5b04d3d5a017beaaf02a6768 260 PRINTS PR00111 Alpha/beta hydrolase fold signature 91 104 1.9E-9 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS08330 8408af4d5b04d3d5a017beaaf02a6768 260 PRINTS PR00111 Alpha/beta hydrolase fold signature 204 218 1.9E-9 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS08330 8408af4d5b04d3d5a017beaaf02a6768 260 PRINTS PR00111 Alpha/beta hydrolase fold signature 47 62 1.9E-9 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS08330 8408af4d5b04d3d5a017beaaf02a6768 260 Gene3D G3DSA:3.40.50.1820 2 258 2.7E-62 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS12010 c6b9616ed04f4c1df296e12066032a1a 158 PANTHER PTHR35146 1 153 1.6E-50 T 23-04-2016 RPE_RS12010 c6b9616ed04f4c1df296e12066032a1a 158 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 18 146 2.2E-45 T 23-04-2016 IPR003791 Protein of unknown function UPF0178 RPE_RS12010 c6b9616ed04f4c1df296e12066032a1a 158 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 4 148 30.851 T 23-04-2016 IPR003791 Protein of unknown function UPF0178 RPE_RS12010 c6b9616ed04f4c1df296e12066032a1a 158 PANTHER PTHR35146:SF1 1 153 1.6E-50 T 23-04-2016 RPE_RS02695 f3fd18d4d88a09418a8cf4c5e4c3fb0f 196 PANTHER PTHR30582:SF1 46 195 1.6E-65 T 23-04-2016 RPE_RS02695 f3fd18d4d88a09418a8cf4c5e4c3fb0f 196 Gene3D G3DSA:2.40.440.10 57 191 5.9E-36 T 23-04-2016 RPE_RS02695 f3fd18d4d88a09418a8cf4c5e4c3fb0f 196 SUPERFAMILY SSF141523 57 191 8.89E-34 T 23-04-2016 RPE_RS02695 f3fd18d4d88a09418a8cf4c5e4c3fb0f 196 Pfam PF03734 L,D-transpeptidase catalytic domain 63 190 9.1E-16 T 23-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 RPE_RS02695 f3fd18d4d88a09418a8cf4c5e4c3fb0f 196 PANTHER PTHR30582 46 195 1.6E-65 T 23-04-2016 RPE_RS13000 5d4d3f1b2faf6d4b85eaa4c36278502c 633 PANTHER PTHR10657:SF13 244 524 5.4E-125 T 23-04-2016 RPE_RS13000 5d4d3f1b2faf6d4b85eaa4c36278502c 633 PANTHER PTHR10657:SF13 2 177 5.4E-125 T 23-04-2016 RPE_RS13000 5d4d3f1b2faf6d4b85eaa4c36278502c 633 Gene3D G3DSA:3.10.50.40 264 378 2.9E-18 T 23-04-2016 RPE_RS13000 5d4d3f1b2faf6d4b85eaa4c36278502c 633 SUPERFAMILY SSF109998 245 299 5.89E-24 T 23-04-2016 IPR027304 Trigger factor/SurA domain RPE_RS13000 5d4d3f1b2faf6d4b85eaa4c36278502c 633 SUPERFAMILY SSF109998 44 171 5.89E-24 T 23-04-2016 IPR027304 Trigger factor/SurA domain RPE_RS13000 5d4d3f1b2faf6d4b85eaa4c36278502c 633 Pfam PF13145 PPIC-type PPIASE domain 251 369 2.2E-22 T 23-04-2016 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 RPE_RS13000 5d4d3f1b2faf6d4b85eaa4c36278502c 633 Pfam PF13624 SurA N-terminal domain 1 167 2.4E-39 T 23-04-2016 RPE_RS13000 5d4d3f1b2faf6d4b85eaa4c36278502c 633 SUPERFAMILY SSF54534 223 355 1.02E-13 T 23-04-2016 RPE_RS13000 5d4d3f1b2faf6d4b85eaa4c36278502c 633 PANTHER PTHR10657 244 524 5.4E-125 T 23-04-2016 RPE_RS13000 5d4d3f1b2faf6d4b85eaa4c36278502c 633 PANTHER PTHR10657 2 177 5.4E-125 T 23-04-2016 RPE_RS07400 b453b3194a24813fbe0b1dbc56f095fe 336 Gene3D G3DSA:3.30.390.10 13 111 2.4E-35 T 23-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RPE_RS07400 b453b3194a24813fbe0b1dbc56f095fe 336 SMART SM00922 140 231 1.5E-21 T 23-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal RPE_RS07400 b453b3194a24813fbe0b1dbc56f095fe 336 PANTHER PTHR13794:SF60 3 330 7.1E-113 T 23-04-2016 RPE_RS07400 b453b3194a24813fbe0b1dbc56f095fe 336 SUPERFAMILY SSF54826 13 121 1.2E-27 T 23-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RPE_RS07400 b453b3194a24813fbe0b1dbc56f095fe 336 SUPERFAMILY SSF51604 128 336 1.13E-56 T 23-04-2016 IPR029065 Enolase C-terminal domain-like RPE_RS07400 b453b3194a24813fbe0b1dbc56f095fe 336 Gene3D G3DSA:3.20.20.120 128 326 5.2E-60 T 23-04-2016 IPR029065 Enolase C-terminal domain-like RPE_RS07400 b453b3194a24813fbe0b1dbc56f095fe 336 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 19 121 2.6E-10 T 23-04-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain RPE_RS07400 b453b3194a24813fbe0b1dbc56f095fe 336 PANTHER PTHR13794 3 330 7.1E-113 T 23-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 RPE_RS07400 b453b3194a24813fbe0b1dbc56f095fe 336 Pfam PF13378 Enolase C-terminal domain-like 146 301 5.1E-29 T 23-04-2016 IPR029065 Enolase C-terminal domain-like RPE_RS14410 61b49d97a02c22a1f7696d62a42d36de 262 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 124 134 - T 23-04-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 RPE_RS14410 61b49d97a02c22a1f7696d62a42d36de 262 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 2 10 - T 23-04-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 RPE_RS14410 61b49d97a02c22a1f7696d62a42d36de 262 Pfam PF01026 TatD related DNase 3 253 2.1E-80 T 23-04-2016 IPR001130 TatD family GO:0016788 RPE_RS14410 61b49d97a02c22a1f7696d62a42d36de 262 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 190 206 - T 23-04-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 RPE_RS14410 61b49d97a02c22a1f7696d62a42d36de 262 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 2 254 8.0E-82 T 23-04-2016 IPR015991 Uncharacterised deoxyribonuclease TatD-type GO:0004536 RPE_RS14410 61b49d97a02c22a1f7696d62a42d36de 262 Gene3D G3DSA:3.20.20.140 1 254 5.0E-90 T 23-04-2016 RPE_RS14410 61b49d97a02c22a1f7696d62a42d36de 262 PANTHER PTHR10060:SF20 1 257 2.0E-119 T 23-04-2016 RPE_RS14410 61b49d97a02c22a1f7696d62a42d36de 262 SUPERFAMILY SSF51556 2 254 3.03E-89 T 23-04-2016 IPR032466 Metal-dependent hydrolase RPE_RS14410 61b49d97a02c22a1f7696d62a42d36de 262 PIRSF PIRSF005902 1 257 2.3E-80 T 23-04-2016 IPR001130 TatD family GO:0016788 RPE_RS14410 61b49d97a02c22a1f7696d62a42d36de 262 PANTHER PTHR10060 1 257 2.0E-119 T 23-04-2016 IPR001130 TatD family GO:0016788 RPE_RS04910 6ecae454adfc1126df64bbb35a54a970 231 SUPERFAMILY SSF53335 4 147 6.01E-21 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS04910 6ecae454adfc1126df64bbb35a54a970 231 SUPERFAMILY SSF53335 192 219 6.01E-21 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS04910 6ecae454adfc1126df64bbb35a54a970 231 Pfam PF13649 Methyltransferase domain 43 135 1.2E-8 T 23-04-2016 RPE_RS04910 6ecae454adfc1126df64bbb35a54a970 231 Gene3D G3DSA:3.40.50.150 2 144 3.5E-17 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS04910 6ecae454adfc1126df64bbb35a54a970 231 Gene3D G3DSA:3.40.50.150 191 212 3.5E-17 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS23440 25c42dbc2a2fb15918882c12464ca65f 313 TIGRFAM TIGR02001 gcw_chp: conserved hypothetical protein 41 133 1.3E-17 T 23-04-2016 IPR010239 Conserved hypothetical protein CHP02001 RPE_RS23440 25c42dbc2a2fb15918882c12464ca65f 313 Pfam PF09694 Bacterial protein of unknown function (Gcw_chp) 39 135 5.0E-12 T 23-04-2016 IPR010239 Conserved hypothetical protein CHP02001 RPE_RS09830 a7c44292aa05e6d4adf7034e9f75d67e 340 PIRSF PIRSF017082 1 338 1.0E-99 T 23-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RPE_RS09830 a7c44292aa05e6d4adf7034e9f75d67e 340 PANTHER PTHR30349 24 300 1.1E-115 T 23-04-2016 RPE_RS09830 a7c44292aa05e6d4adf7034e9f75d67e 340 PANTHER PTHR30349:SF7 24 300 1.1E-115 T 23-04-2016 RPE_RS09830 a7c44292aa05e6d4adf7034e9f75d67e 340 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 66 334 2.6E-30 T 23-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RPE_RS08465 9ded1b014af6c6214dc6e794b1dd9fe6 398 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 69 383 1.2E-74 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RPE_RS08465 9ded1b014af6c6214dc6e794b1dd9fe6 398 SUPERFAMILY SSF111369 84 298 5.1E-47 T 23-04-2016 RPE_RS08465 9ded1b014af6c6214dc6e794b1dd9fe6 398 PANTHER PTHR30469:SF5 22 394 4.7E-194 T 23-04-2016 RPE_RS08465 9ded1b014af6c6214dc6e794b1dd9fe6 398 PANTHER PTHR30469 22 394 4.7E-194 T 23-04-2016 RPE_RS08465 9ded1b014af6c6214dc6e794b1dd9fe6 398 Gene3D G3DSA:2.40.50.100 188 221 2.3E-14 T 23-04-2016 RPE_RS08465 9ded1b014af6c6214dc6e794b1dd9fe6 398 Gene3D G3DSA:2.40.50.100 94 127 2.3E-14 T 23-04-2016 RPE_RS08465 9ded1b014af6c6214dc6e794b1dd9fe6 398 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 93 294 2.9E-33 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RPE_RS11440 dcb326bac060a0f70e61b86aee33eb6d 206 SUPERFAMILY SSF53335 4 204 2.37E-30 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS11440 dcb326bac060a0f70e61b86aee33eb6d 206 PANTHER PTHR10108 7 141 4.6E-20 T 23-04-2016 RPE_RS11440 dcb326bac060a0f70e61b86aee33eb6d 206 Pfam PF13649 Methyltransferase domain 47 138 3.6E-15 T 23-04-2016 RPE_RS11440 dcb326bac060a0f70e61b86aee33eb6d 206 Gene3D G3DSA:3.40.50.150 2 185 6.0E-32 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS09895 8ac66e0b53b1a6b40691fd9ec0ab2868 211 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 3 196 4.5E-53 T 23-04-2016 IPR002751 Cobalamin (vitamin B12) biosynthesis CbiM family GO:0000041|GO:0016021 UniPathway: UPA00148 RPE_RS09895 8ac66e0b53b1a6b40691fd9ec0ab2868 211 PANTHER PTHR34229:SF1 3 201 4.3E-45 T 23-04-2016 RPE_RS09895 8ac66e0b53b1a6b40691fd9ec0ab2868 211 PANTHER PTHR34229 3 201 4.3E-45 T 23-04-2016 RPE_RS02285 22e8257230b73d86dbb97f469a2e33ad 278 PANTHER PTHR10314:SF4 1 52 1.7E-26 T 23-04-2016 RPE_RS02285 22e8257230b73d86dbb97f469a2e33ad 278 PANTHER PTHR10314:SF4 75 131 1.7E-26 T 23-04-2016 RPE_RS02285 22e8257230b73d86dbb97f469a2e33ad 278 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 15 269 36.814 T 23-04-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RPE_RS02285 22e8257230b73d86dbb97f469a2e33ad 278 Pfam PF00290 Tryptophan synthase alpha chain 9 252 5.7E-94 T 23-04-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RPE_RS02285 22e8257230b73d86dbb97f469a2e33ad 278 Gene3D G3DSA:3.20.20.70 4 272 1.8E-101 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS02285 22e8257230b73d86dbb97f469a2e33ad 278 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 9 253 3.4E-80 T 23-04-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RPE_RS02285 22e8257230b73d86dbb97f469a2e33ad 278 SUPERFAMILY SSF51366 3 256 3.39E-91 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 RPE_RS02285 22e8257230b73d86dbb97f469a2e33ad 278 PANTHER PTHR10314 1 52 1.7E-26 T 23-04-2016 RPE_RS02285 22e8257230b73d86dbb97f469a2e33ad 278 PANTHER PTHR10314 75 131 1.7E-26 T 23-04-2016 RPE_RS02285 22e8257230b73d86dbb97f469a2e33ad 278 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 49 62 - T 23-04-2016 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 RPE_RS14545 feae5c9b061ae2a2cb416322c3eeee11 250 Gene3D G3DSA:2.40.160.20 31 248 1.1E-25 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RPE_RS14545 feae5c9b061ae2a2cb416322c3eeee11 250 PANTHER PTHR34001 1 250 4.9E-69 T 23-04-2016 RPE_RS14545 feae5c9b061ae2a2cb416322c3eeee11 250 SUPERFAMILY SSF56925 36 245 9.42E-22 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RPE_RS12820 bc528b5a0bad96837e3c0703ead19031 187 Pfam PF01765 Ribosome recycling factor 22 185 1.1E-60 T 23-04-2016 IPR023584 Ribosome recycling factor domain RPE_RS12820 bc528b5a0bad96837e3c0703ead19031 187 TIGRFAM TIGR00496 frr: ribosome recycling factor 12 187 1.0E-65 T 23-04-2016 IPR002661 Ribosome recycling factor GO:0006412 RPE_RS12820 bc528b5a0bad96837e3c0703ead19031 187 PANTHER PTHR20982 4 187 2.7E-78 T 23-04-2016 IPR002661 Ribosome recycling factor GO:0006412 RPE_RS12820 bc528b5a0bad96837e3c0703ead19031 187 Gene3D G3DSA:1.10.132.20 68 187 1.7E-43 T 23-04-2016 IPR023584 Ribosome recycling factor domain RPE_RS12820 bc528b5a0bad96837e3c0703ead19031 187 SUPERFAMILY SSF55194 6 186 5.49E-68 T 23-04-2016 IPR023584 Ribosome recycling factor domain RPE_RS12820 bc528b5a0bad96837e3c0703ead19031 187 Hamap MF_00040 Ribosome-recycling factor [frr]. 5 187 25.998 T 23-04-2016 IPR002661 Ribosome recycling factor GO:0006412 RPE_RS22830 e548cb1ff73c756091020f850a4e3f90 266 PANTHER PTHR11908:SF68 4 265 9.6E-79 T 23-04-2016 RPE_RS22830 e548cb1ff73c756091020f850a4e3f90 266 Gene3D G3DSA:3.30.465.10 59 166 2.9E-30 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RPE_RS22830 e548cb1ff73c756091020f850a4e3f90 266 SUPERFAMILY SSF56176 1 167 2.55E-48 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RPE_RS22830 e548cb1ff73c756091020f850a4e3f90 266 Gene3D G3DSA:3.30.43.10 1 51 2.8E-21 T 23-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 RPE_RS22830 e548cb1ff73c756091020f850a4e3f90 266 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 4 167 4.8E-46 T 23-04-2016 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 RPE_RS22830 e548cb1ff73c756091020f850a4e3f90 266 PANTHER PTHR11908 4 265 9.6E-79 T 23-04-2016 RPE_RS22830 e548cb1ff73c756091020f850a4e3f90 266 Gene3D G3DSA:3.30.390.50 172 265 4.0E-12 T 23-04-2016 RPE_RS22830 e548cb1ff73c756091020f850a4e3f90 266 SMART SM01092 171 265 2.9E-14 T 23-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal RPE_RS22830 e548cb1ff73c756091020f850a4e3f90 266 SUPERFAMILY SSF55447 170 264 4.71E-15 T 23-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal RPE_RS21695 d591fd80bfd7d3ce90f4a78b7e7f3ca1 879 Gene3D G3DSA:3.40.50.300 551 776 5.5E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS21695 d591fd80bfd7d3ce90f4a78b7e7f3ca1 879 Gene3D G3DSA:1.10.8.60 777 857 2.3E-31 T 23-04-2016 RPE_RS21695 d591fd80bfd7d3ce90f4a78b7e7f3ca1 879 SUPERFAMILY SSF81923 4 158 2.88E-38 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 RPE_RS21695 d591fd80bfd7d3ce90f4a78b7e7f3ca1 879 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 767 846 5.0E-26 T 23-04-2016 IPR019489 Clp ATPase, C-terminal RPE_RS21695 d591fd80bfd7d3ce90f4a78b7e7f3ca1 879 SMART SM00382 598 749 1.8E-10 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS21695 d591fd80bfd7d3ce90f4a78b7e7f3ca1 879 SMART SM00382 200 346 4.9E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS21695 d591fd80bfd7d3ce90f4a78b7e7f3ca1 879 Gene3D G3DSA:1.10.8.60 345 430 1.4E-37 T 23-04-2016 RPE_RS21695 d591fd80bfd7d3ce90f4a78b7e7f3ca1 879 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 296 308 - T 23-04-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 RPE_RS21695 d591fd80bfd7d3ce90f4a78b7e7f3ca1 879 Pfam PF07724 AAA domain (Cdc48 subfamily) 597 761 1.1E-56 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RPE_RS21695 d591fd80bfd7d3ce90f4a78b7e7f3ca1 879 PANTHER PTHR11638:SF18 1 877 0.0 T 23-04-2016 RPE_RS21695 d591fd80bfd7d3ce90f4a78b7e7f3ca1 879 Gene3D G3DSA:1.10.1780.10 1 149 7.0E-42 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 RPE_RS21695 d591fd80bfd7d3ce90f4a78b7e7f3ca1 879 SUPERFAMILY SSF52540 548 847 1.29E-80 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS21695 d591fd80bfd7d3ce90f4a78b7e7f3ca1 879 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 632 650 - T 23-04-2016 IPR028299 ClpA/B, conserved site 2 RPE_RS21695 d591fd80bfd7d3ce90f4a78b7e7f3ca1 879 PANTHER PTHR11638 1 877 0.0 T 23-04-2016 RPE_RS21695 d591fd80bfd7d3ce90f4a78b7e7f3ca1 879 SUPERFAMILY SSF52540 161 546 7.35E-101 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS21695 d591fd80bfd7d3ce90f4a78b7e7f3ca1 879 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 676 694 1.3E-42 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 RPE_RS21695 d591fd80bfd7d3ce90f4a78b7e7f3ca1 879 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 647 665 1.3E-42 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 RPE_RS21695 d591fd80bfd7d3ce90f4a78b7e7f3ca1 879 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 602 620 1.3E-42 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 RPE_RS21695 d591fd80bfd7d3ce90f4a78b7e7f3ca1 879 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 709 723 1.3E-42 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 RPE_RS21695 d591fd80bfd7d3ce90f4a78b7e7f3ca1 879 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 205 336 7.5E-12 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RPE_RS21695 d591fd80bfd7d3ce90f4a78b7e7f3ca1 879 Gene3D G3DSA:3.40.50.300 161 343 7.3E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS21695 d591fd80bfd7d3ce90f4a78b7e7f3ca1 879 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 95 146 4.8E-13 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 RPE_RS21695 d591fd80bfd7d3ce90f4a78b7e7f3ca1 879 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 6.9E-12 T 23-04-2016 IPR004176 Clp, N-terminal GO:0019538 RPE_RS21695 d591fd80bfd7d3ce90f4a78b7e7f3ca1 879 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 856 0.0 T 23-04-2016 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0016485 RPE_RS21695 d591fd80bfd7d3ce90f4a78b7e7f3ca1 879 SMART SM01086 767 856 7.0E-39 T 23-04-2016 IPR019489 Clp ATPase, C-terminal RPE_RS11990 b16bedae154a5927c2238f7fca6d4f55 164 Pfam PF01575 MaoC like domain 17 125 5.3E-23 T 23-04-2016 IPR002539 MaoC-like domain RPE_RS11990 b16bedae154a5927c2238f7fca6d4f55 164 Gene3D G3DSA:3.10.129.10 18 156 3.6E-32 T 23-04-2016 IPR029069 HotDog domain RPE_RS11990 b16bedae154a5927c2238f7fca6d4f55 164 PANTHER PTHR13078 17 149 2.2E-33 T 23-04-2016 RPE_RS11990 b16bedae154a5927c2238f7fca6d4f55 164 SUPERFAMILY SSF54637 17 161 2.99E-34 T 23-04-2016 IPR029069 HotDog domain RPE_RS20595 4607da8225497dca9aa42878d2e6d089 291 Gene3D G3DSA:3.20.20.140 12 291 1.2E-68 T 23-04-2016 RPE_RS20595 4607da8225497dca9aa42878d2e6d089 291 PANTHER PTHR20852 176 291 9.0E-56 T 23-04-2016 RPE_RS20595 4607da8225497dca9aa42878d2e6d089 291 SUPERFAMILY SSF51556 12 291 3.0E-71 T 23-04-2016 IPR032466 Metal-dependent hydrolase RPE_RS20595 4607da8225497dca9aa42878d2e6d089 291 PANTHER PTHR20852:SF60 176 291 9.0E-56 T 23-04-2016 RPE_RS20595 4607da8225497dca9aa42878d2e6d089 291 Pfam PF04909 Amidohydrolase 12 290 1.6E-62 T 23-04-2016 IPR006680 Amidohydrolase-related GO:0016787 RPE_RS05180 0b89f9519be6ca0d1094b2bfeb584a56 1006 Pfam PF13604 AAA domain 357 543 2.3E-58 T 23-04-2016 RPE_RS05180 0b89f9519be6ca0d1094b2bfeb584a56 1006 Gene3D G3DSA:3.40.50.300 327 526 4.7E-25 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS05180 0b89f9519be6ca0d1094b2bfeb584a56 1006 SUPERFAMILY SSF52540 353 529 9.04E-24 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS05180 0b89f9519be6ca0d1094b2bfeb584a56 1006 SUPERFAMILY SSF52540 565 729 1.58E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS05180 0b89f9519be6ca0d1094b2bfeb584a56 1006 SUPERFAMILY SSF52540 464 526 1.58E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS05180 0b89f9519be6ca0d1094b2bfeb584a56 1006 Pfam PF03389 MobA/MobL family 18 216 1.3E-72 T 23-04-2016 IPR005053 MobA/MobL protein RPE_RS05180 0b89f9519be6ca0d1094b2bfeb584a56 1006 TIGRFAM TIGR02768 TraA_Ti: Ti-type conjugative transfer relaxase TraA 1 757 5.7E-268 T 23-04-2016 IPR014136 Ti-type conjugative transfer relaxase TraA RPE_RS09785 2bcc345199839508a465eea23235b2a9 306 PANTHER PTHR42194 20 293 3.6E-61 T 23-04-2016 RPE_RS09785 2bcc345199839508a465eea23235b2a9 306 Hamap MF_00697 UPF0276 protein . 26 299 46.13 T 23-04-2016 IPR007801 Uncharacterised protein family UPF0276 RPE_RS09785 2bcc345199839508a465eea23235b2a9 306 SUPERFAMILY SSF51658 46 272 1.51E-10 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RPE_RS09785 2bcc345199839508a465eea23235b2a9 306 Gene3D G3DSA:3.20.20.150 26 301 5.5E-102 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RPE_RS09785 2bcc345199839508a465eea23235b2a9 306 PANTHER PTHR42194:SF1 20 293 3.6E-61 T 23-04-2016 RPE_RS09785 2bcc345199839508a465eea23235b2a9 306 Pfam PF05114 Protein of unknown function (DUF692) 26 291 1.6E-104 T 23-04-2016 IPR007801 Uncharacterised protein family UPF0276 RPE_RS21955 b5bbfba29df1bde98ebb72c6e9b1e49c 204 Gene3D G3DSA:1.10.3210.10 9 203 3.1E-66 T 23-04-2016 IPR006674 HD domain RPE_RS21955 b5bbfba29df1bde98ebb72c6e9b1e49c 204 SUPERFAMILY SSF109604 12 202 4.28E-54 T 23-04-2016 RPE_RS02705 a11041e10845b8a318336742f3cd0a67 468 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 10 436 6.9E-157 T 23-04-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 RPE_RS02705 a11041e10845b8a318336742f3cd0a67 468 PANTHER PTHR30365 1 458 1.9E-242 T 23-04-2016 RPE_RS02705 a11041e10845b8a318336742f3cd0a67 468 PANTHER PTHR30365:SF8 1 458 1.9E-242 T 23-04-2016 RPE_RS02705 a11041e10845b8a318336742f3cd0a67 468 PIRSF PIRSF006446 3 458 5.8E-201 T 23-04-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 RPE_RS11160 739c528138fd0cec3a9cde0582e3378b 243 PANTHER PTHR21091:SF127 65 182 1.2E-39 T 23-04-2016 RPE_RS11160 739c528138fd0cec3a9cde0582e3378b 243 PANTHER PTHR21091:SF127 5 44 1.2E-39 T 23-04-2016 RPE_RS11160 739c528138fd0cec3a9cde0582e3378b 243 SUPERFAMILY SSF53790 4 239 2.09E-48 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RPE_RS11160 739c528138fd0cec3a9cde0582e3378b 243 TIGRFAM TIGR01467 cobI_cbiL: precorrin-2 C(20)-methyltransferase 5 237 3.0E-69 T 23-04-2016 IPR006364 Precorrin-2 C(20)-methyltransferase domain GO:0008757|GO:0009236 RPE_RS11160 739c528138fd0cec3a9cde0582e3378b 243 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 6 219 2.5E-44 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RPE_RS11160 739c528138fd0cec3a9cde0582e3378b 243 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 103 135 - T 23-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 RPE_RS11160 739c528138fd0cec3a9cde0582e3378b 243 PANTHER PTHR21091 65 182 1.2E-39 T 23-04-2016 RPE_RS11160 739c528138fd0cec3a9cde0582e3378b 243 PANTHER PTHR21091 5 44 1.2E-39 T 23-04-2016 RPE_RS11160 739c528138fd0cec3a9cde0582e3378b 243 PIRSF PIRSF036427 3 242 2.5E-66 T 23-04-2016 IPR012382 Precorrin-2 C(20)-methyltransferase GO:0008757|GO:0009236|GO:0030788 RPE_RS11160 739c528138fd0cec3a9cde0582e3378b 243 Gene3D G3DSA:3.40.1010.10 4 136 6.7E-32 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 RPE_RS03265 02b2e34d5d9b8812568a043016c9235d 387 Gene3D G3DSA:3.40.630.10 329 385 8.2E-69 T 23-04-2016 RPE_RS03265 02b2e34d5d9b8812568a043016c9235d 387 Gene3D G3DSA:3.40.630.10 6 196 8.2E-69 T 23-04-2016 RPE_RS03265 02b2e34d5d9b8812568a043016c9235d 387 SUPERFAMILY SSF53187 5 187 1.83E-61 T 23-04-2016 RPE_RS03265 02b2e34d5d9b8812568a043016c9235d 387 SUPERFAMILY SSF53187 305 385 1.83E-61 T 23-04-2016 RPE_RS03265 02b2e34d5d9b8812568a043016c9235d 387 Pfam PF07687 Peptidase dimerisation domain 184 288 3.6E-21 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RPE_RS03265 02b2e34d5d9b8812568a043016c9235d 387 SUPERFAMILY SSF55031 188 288 4.64E-22 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RPE_RS03265 02b2e34d5d9b8812568a043016c9235d 387 Gene3D G3DSA:3.30.70.360 197 290 1.1E-25 T 23-04-2016 IPR011650 Peptidase M20, dimerisation domain RPE_RS03265 02b2e34d5d9b8812568a043016c9235d 387 Pfam PF01546 Peptidase family M20/M25/M40 70 383 3.1E-42 T 23-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 RPE_RS03265 02b2e34d5d9b8812568a043016c9235d 387 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 5 387 48.377 T 23-04-2016 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18|UniPathway: UPA00034 RPE_RS03265 02b2e34d5d9b8812568a043016c9235d 387 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 9 384 1.0E-123 T 23-04-2016 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18|UniPathway: UPA00034 RPE_RS03265 02b2e34d5d9b8812568a043016c9235d 387 PANTHER PTHR11014 6 387 1.8E-71 T 23-04-2016 RPE_RS03265 02b2e34d5d9b8812568a043016c9235d 387 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 69 78 - T 23-04-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 RPE_RS20505 f580a0197f44fb220e964b63fcd12191 229 TIGRFAM TIGR03717 R_switched_YjbE: integral membrane protein, YjbE family 21 212 4.2E-66 T 23-04-2016 IPR022301 Integral membrane protein YjbE RPE_RS20505 f580a0197f44fb220e964b63fcd12191 229 PANTHER PTHR30060 8 213 5.8E-39 T 23-04-2016 RPE_RS20505 f580a0197f44fb220e964b63fcd12191 229 Pfam PF03741 Integral membrane protein TerC family 24 211 4.3E-44 T 23-04-2016 IPR005496 Integral membrane protein TerC GO:0016021 RPE_RS18100 a8a7f678b0894acbaa607b6f4d53b363 409 PANTHER PTHR22935:SF77 14 409 7.0E-112 T 23-04-2016 RPE_RS18100 a8a7f678b0894acbaa607b6f4d53b363 409 Gene3D G3DSA:3.40.710.10 25 391 1.9E-85 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS18100 a8a7f678b0894acbaa607b6f4d53b363 409 Pfam PF00144 Beta-lactamase 39 392 1.2E-62 T 23-04-2016 IPR001466 Beta-lactamase-related RPE_RS18100 a8a7f678b0894acbaa607b6f4d53b363 409 PANTHER PTHR22935 14 409 7.0E-112 T 23-04-2016 RPE_RS18100 a8a7f678b0894acbaa607b6f4d53b363 409 SUPERFAMILY SSF56601 32 395 7.92E-91 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS03245 bbf52d53dee3042c882ef09fe151d342 232 TIGRFAM TIGR01993 Pyr-5-nucltdase: pyrimidine 5'-nucleotidase 16 194 5.0E-72 T 23-04-2016 IPR010237 Pyrimidine 5-nucleotidase RPE_RS03245 bbf52d53dee3042c882ef09fe151d342 232 PANTHER PTHR12725 14 222 1.1E-32 T 23-04-2016 RPE_RS03245 bbf52d53dee3042c882ef09fe151d342 232 SUPERFAMILY SSF56784 14 225 1.74E-35 T 23-04-2016 IPR023214 HAD-like domain RPE_RS03245 bbf52d53dee3042c882ef09fe151d342 232 Gene3D G3DSA:3.40.50.1000 14 209 3.2E-30 T 23-04-2016 IPR023214 HAD-like domain RPE_RS03245 bbf52d53dee3042c882ef09fe151d342 232 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 17 194 5.2E-14 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RPE_RS03245 bbf52d53dee3042c882ef09fe151d342 232 Pfam PF13419 Haloacid dehalogenase-like hydrolase 18 194 1.4E-10 T 23-04-2016 IPR023214 HAD-like domain RPE_RS23345 f62aadfef4d14bd6df40dd9aac520751 283 Pfam PF01739 CheR methyltransferase, SAM binding domain 83 268 7.7E-63 T 23-04-2016 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal RPE_RS23345 f62aadfef4d14bd6df40dd9aac520751 283 PRINTS PR00996 Glutamate methyltransferase family signature 223 237 8.4E-43 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS23345 f62aadfef4d14bd6df40dd9aac520751 283 PRINTS PR00996 Glutamate methyltransferase family signature 151 167 8.4E-43 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS23345 f62aadfef4d14bd6df40dd9aac520751 283 PRINTS PR00996 Glutamate methyltransferase family signature 76 88 8.4E-43 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS23345 f62aadfef4d14bd6df40dd9aac520751 283 PRINTS PR00996 Glutamate methyltransferase family signature 36 49 8.4E-43 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS23345 f62aadfef4d14bd6df40dd9aac520751 283 PRINTS PR00996 Glutamate methyltransferase family signature 116 136 8.4E-43 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS23345 f62aadfef4d14bd6df40dd9aac520751 283 PRINTS PR00996 Glutamate methyltransferase family signature 242 265 8.4E-43 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS23345 f62aadfef4d14bd6df40dd9aac520751 283 PANTHER PTHR24422 4 272 3.3E-83 T 23-04-2016 RPE_RS23345 f62aadfef4d14bd6df40dd9aac520751 283 SUPERFAMILY SSF53335 83 267 5.63E-51 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS23345 f62aadfef4d14bd6df40dd9aac520751 283 PANTHER PTHR24422:SF13 4 272 3.3E-83 T 23-04-2016 RPE_RS23345 f62aadfef4d14bd6df40dd9aac520751 283 PIRSF PIRSF000410 1 283 1.0E-103 T 23-04-2016 IPR026024 Chemotaxis protein methyltransferase CheR RPE_RS23345 f62aadfef4d14bd6df40dd9aac520751 283 Gene3D G3DSA:1.10.155.10 7 81 3.5E-20 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RPE_RS23345 f62aadfef4d14bd6df40dd9aac520751 283 SUPERFAMILY SSF47757 4 82 3.79E-17 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RPE_RS23345 f62aadfef4d14bd6df40dd9aac520751 283 Gene3D G3DSA:3.40.50.150 82 280 5.9E-66 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS23345 f62aadfef4d14bd6df40dd9aac520751 283 SMART SM00138 14 283 7.1E-97 T 23-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RPE_RS23345 f62aadfef4d14bd6df40dd9aac520751 283 Pfam PF03705 CheR methyltransferase, all-alpha domain 16 66 8.4E-12 T 23-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RPE_RS07185 dd604b6aea473a17565567d2ce70bc83 288 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 181 286 6.0E-34 T 23-04-2016 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 RPE_RS07185 dd604b6aea473a17565567d2ce70bc83 288 SUPERFAMILY SSF48179 180 287 2.04E-31 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RPE_RS07185 dd604b6aea473a17565567d2ce70bc83 288 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 25 286 25.042 T 23-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 RPE_RS07185 dd604b6aea473a17565567d2ce70bc83 288 SUPERFAMILY SSF51735 26 178 3.26E-24 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS07185 dd604b6aea473a17565567d2ce70bc83 288 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 27 286 1.6E-71 T 23-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 RPE_RS07185 dd604b6aea473a17565567d2ce70bc83 288 PANTHER PTHR11645 31 288 1.5E-78 T 23-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 RPE_RS07185 dd604b6aea473a17565567d2ce70bc83 288 PANTHER PTHR11645:SF0 31 288 1.5E-78 T 23-04-2016 RPE_RS07185 dd604b6aea473a17565567d2ce70bc83 288 Gene3D G3DSA:3.40.50.720 26 178 2.9E-30 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS07185 dd604b6aea473a17565567d2ce70bc83 288 Gene3D G3DSA:1.10.3730.10 180 286 1.7E-35 T 23-04-2016 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 RPE_RS07185 dd604b6aea473a17565567d2ce70bc83 288 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 28 119 4.6E-7 T 23-04-2016 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal RPE_RS07185 dd604b6aea473a17565567d2ce70bc83 288 PIRSF PIRSF000193 24 288 5.8E-56 T 23-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 RPE_RS16405 7bd333da4280739d8acf82e815947b2a 475 PANTHER PTHR23501 1 475 5.3E-221 T 23-04-2016 RPE_RS16405 7bd333da4280739d8acf82e815947b2a 475 PANTHER PTHR23501:SF66 1 475 5.3E-221 T 23-04-2016 RPE_RS16405 7bd333da4280739d8acf82e815947b2a 475 SUPERFAMILY SSF103473 225 433 1.02E-49 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS16405 7bd333da4280739d8acf82e815947b2a 475 SUPERFAMILY SSF103473 2 171 1.02E-49 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS16405 7bd333da4280739d8acf82e815947b2a 475 Gene3D G3DSA:1.20.1250.20 244 439 1.0E-17 T 23-04-2016 RPE_RS16405 7bd333da4280739d8acf82e815947b2a 475 Gene3D G3DSA:1.20.1250.20 3 167 3.7E-24 T 23-04-2016 RPE_RS16405 7bd333da4280739d8acf82e815947b2a 475 Pfam PF07690 Major Facilitator Superfamily 4 386 1.5E-40 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RPE_RS20860 11f46a8ce92b5c7ac8814054fd06435a 171 Pfam PF06186 Protein of unknown function (DUF992) 15 154 1.0E-54 T 23-04-2016 IPR009333 Protein of unknown function DUF992 RPE_RS12605 e39e61763613c1410866ac0593f66ed1 254 Pfam PF14096 Domain of unknown function (DUF4274) 29 99 4.9E-7 T 23-04-2016 IPR025369 Domain of unknown function DUF4274 RPE_RS15750 dd35cfe51aa5340a855e36aa6974310b 616 PANTHER PTHR32303 31 220 2.4E-159 T 23-04-2016 RPE_RS15750 dd35cfe51aa5340a855e36aa6974310b 616 TIGRFAM TIGR03075 PQQ_enz_alc_DH: PQQ-dependent dehydrogenase, methanol/ethanol family 16 558 1.1E-204 T 23-04-2016 IPR017512 PQQ-dependent dehydrogenase, methanol/ethanol family GO:0005509|GO:0016020|GO:0016614|GO:0055114 RPE_RS15750 dd35cfe51aa5340a855e36aa6974310b 616 PANTHER PTHR32303:SF6 397 603 2.4E-159 T 23-04-2016 RPE_RS15750 dd35cfe51aa5340a855e36aa6974310b 616 PANTHER PTHR32303:SF6 242 364 2.4E-159 T 23-04-2016 RPE_RS15750 dd35cfe51aa5340a855e36aa6974310b 616 Pfam PF13360 PQQ-like domain 70 220 1.5E-8 T 23-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat RPE_RS15750 dd35cfe51aa5340a855e36aa6974310b 616 PANTHER PTHR32303 397 603 2.4E-159 T 23-04-2016 RPE_RS15750 dd35cfe51aa5340a855e36aa6974310b 616 PANTHER PTHR32303 242 364 2.4E-159 T 23-04-2016 RPE_RS15750 dd35cfe51aa5340a855e36aa6974310b 616 ProSitePatterns PS00363 Bacterial quinoprotein dehydrogenases signature 1. 32 60 - T 23-04-2016 IPR001479 Quinoprotein dehydrogenase, conserved site GO:0030288|GO:0055114 RPE_RS15750 dd35cfe51aa5340a855e36aa6974310b 616 SUPERFAMILY SSF50998 26 612 1.44E-169 T 23-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily RPE_RS15750 dd35cfe51aa5340a855e36aa6974310b 616 ProSitePatterns PS00364 Bacterial quinoprotein dehydrogenases signature 2. 262 283 - T 23-04-2016 IPR001479 Quinoprotein dehydrogenase, conserved site GO:0030288|GO:0055114 RPE_RS15750 dd35cfe51aa5340a855e36aa6974310b 616 PANTHER PTHR32303:SF6 31 220 2.4E-159 T 23-04-2016 RPE_RS15750 dd35cfe51aa5340a855e36aa6974310b 616 Pfam PF01011 PQQ enzyme repeat 504 540 1.8E-4 T 23-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat RPE_RS15750 dd35cfe51aa5340a855e36aa6974310b 616 SMART SM00564 141 167 410.0 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RPE_RS15750 dd35cfe51aa5340a855e36aa6974310b 616 SMART SM00564 77 110 300.0 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RPE_RS15750 dd35cfe51aa5340a855e36aa6974310b 616 SMART SM00564 181 218 9.1E-5 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RPE_RS15750 dd35cfe51aa5340a855e36aa6974310b 616 SMART SM00564 498 530 0.0011 T 23-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RPE_RS15750 dd35cfe51aa5340a855e36aa6974310b 616 Gene3D G3DSA:2.140.10.10 24 602 4.5E-154 T 23-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain RPE_RS21725 6b1c7210f786e052c959494429e8c63c 311 PANTHER PTHR21363:SF0 1 292 1.6E-84 T 23-04-2016 RPE_RS21725 6b1c7210f786e052c959494429e8c63c 311 SUPERFAMILY SSF51735 9 175 2.35E-51 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS21725 6b1c7210f786e052c959494429e8c63c 311 PANTHER PTHR21363 1 292 1.6E-84 T 23-04-2016 RPE_RS21725 6b1c7210f786e052c959494429e8c63c 311 Pfam PF02153 Prephenate dehydrogenase 23 280 5.8E-79 T 23-04-2016 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 RPE_RS21725 6b1c7210f786e052c959494429e8c63c 311 SUPERFAMILY SSF48179 179 289 5.89E-35 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RPE_RS21725 6b1c7210f786e052c959494429e8c63c 311 Gene3D G3DSA:1.10.3660.10 201 284 3.6E-4 T 23-04-2016 RPE_RS21725 6b1c7210f786e052c959494429e8c63c 311 Gene3D G3DSA:3.40.50.720 5 180 1.9E-46 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS03790 9a78c8b8a2900143f1e2f0db796eb5cc 322 Gene3D G3DSA:3.20.20.70 10 307 7.5E-43 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS03790 9a78c8b8a2900143f1e2f0db796eb5cc 322 Pfam PF03060 Nitronate monooxygenase 87 309 6.2E-18 T 23-04-2016 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 RPE_RS03790 9a78c8b8a2900143f1e2f0db796eb5cc 322 PANTHER PTHR32332 2 319 6.5E-175 T 23-04-2016 RPE_RS03790 9a78c8b8a2900143f1e2f0db796eb5cc 322 SUPERFAMILY SSF51412 8 310 5.68E-56 T 23-04-2016 RPE_RS03790 9a78c8b8a2900143f1e2f0db796eb5cc 322 PANTHER PTHR32332:SF21 2 319 6.5E-175 T 23-04-2016 RPE_RS16300 a05e3c9a31d2d18d94aa2bc76d1d4b19 492 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 23 158 8.5E-34 T 23-04-2016 RPE_RS16300 a05e3c9a31d2d18d94aa2bc76d1d4b19 492 Gene3D G3DSA:3.30.565.10 16 225 9.4E-27 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS16300 a05e3c9a31d2d18d94aa2bc76d1d4b19 492 SUPERFAMILY SSF55874 23 166 6.71E-15 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS06575 2fe5bcf5c9b17df0a7a09a967bdab2ab 531 SUPERFAMILY SSF53474 43 170 2.24E-26 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS06575 2fe5bcf5c9b17df0a7a09a967bdab2ab 531 Pfam PF12146 Serine aminopeptidase, S33 59 177 3.6E-13 T 23-04-2016 IPR022742 Serine aminopeptidase, S33 RPE_RS06575 2fe5bcf5c9b17df0a7a09a967bdab2ab 531 Gene3D G3DSA:3.40.50.1820 46 171 5.5E-28 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS19265 89b5f4a3d762f0f2b98b06d5d2bdf5c0 335 PANTHER PTHR11795 94 330 2.1E-70 T 23-04-2016 RPE_RS19265 89b5f4a3d762f0f2b98b06d5d2bdf5c0 335 PANTHER PTHR11795 1 56 2.1E-70 T 23-04-2016 RPE_RS19265 89b5f4a3d762f0f2b98b06d5d2bdf5c0 335 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 313 7.4E-37 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RPE_RS01495 a51e1d54864a49331225827e7a65b2fc 294 Gene3D G3DSA:3.40.50.261 120 290 1.9E-70 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RPE_RS01495 a51e1d54864a49331225827e7a65b2fc 294 Pfam PF02629 CoA binding domain 6 99 8.2E-30 T 23-04-2016 IPR003781 CoA-binding GO:0048037 RPE_RS01495 a51e1d54864a49331225827e7a65b2fc 294 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 240 253 - T 23-04-2016 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site RPE_RS01495 a51e1d54864a49331225827e7a65b2fc 294 PANTHER PTHR11117 1 293 4.4E-191 T 23-04-2016 RPE_RS01495 a51e1d54864a49331225827e7a65b2fc 294 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 4 291 8.3E-134 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RPE_RS01495 a51e1d54864a49331225827e7a65b2fc 294 SMART SM00881 4 100 3.1E-34 T 23-04-2016 IPR003781 CoA-binding GO:0048037 RPE_RS01495 a51e1d54864a49331225827e7a65b2fc 294 Pfam PF00549 CoA-ligase 151 275 1.3E-20 T 23-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RPE_RS01495 a51e1d54864a49331225827e7a65b2fc 294 Gene3D G3DSA:3.40.50.720 2 119 2.5E-56 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS01495 a51e1d54864a49331225827e7a65b2fc 294 SUPERFAMILY SSF52210 123 290 4.97E-52 T 23-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RPE_RS01495 a51e1d54864a49331225827e7a65b2fc 294 PIRSF PIRSF001553 1 294 8.4E-128 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RPE_RS01495 a51e1d54864a49331225827e7a65b2fc 294 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RPE_RS01495 a51e1d54864a49331225827e7a65b2fc 294 SUPERFAMILY SSF51735 1 122 2.39E-41 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS01495 a51e1d54864a49331225827e7a65b2fc 294 PRINTS PR01798 Succinyl-CoA synthase signature 244 261 1.4E-40 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RPE_RS01495 a51e1d54864a49331225827e7a65b2fc 294 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 1.4E-40 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RPE_RS01495 a51e1d54864a49331225827e7a65b2fc 294 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 1.4E-40 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RPE_RS01495 a51e1d54864a49331225827e7a65b2fc 294 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 1.4E-40 T 23-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RPE_RS17305 4b50e7bfbaf2e39343daa15bea85bbee 219 PANTHER PTHR30353:SF13 8 217 1.4E-46 T 23-04-2016 RPE_RS17305 4b50e7bfbaf2e39343daa15bea85bbee 219 Pfam PF09335 SNARE associated Golgi protein 31 160 3.4E-19 T 23-04-2016 IPR032816 SNARE associated Golgi protein RPE_RS17305 4b50e7bfbaf2e39343daa15bea85bbee 219 PANTHER PTHR30353 8 217 1.4E-46 T 23-04-2016 IPR032818 DedA family RPE_RS11730 6fc99e5739e4ce5dafb1f6d6dbf0eb5f 679 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 91 670 32.418 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RPE_RS11730 6fc99e5739e4ce5dafb1f6d6dbf0eb5f 679 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 352 564 2.3E-38 T 23-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS11730 6fc99e5739e4ce5dafb1f6d6dbf0eb5f 679 Pfam PF03129 Anticodon binding domain 577 666 1.6E-17 T 23-04-2016 IPR004154 Anticodon-binding RPE_RS11730 6fc99e5739e4ce5dafb1f6d6dbf0eb5f 679 SUPERFAMILY SSF55186 88 266 8.24E-61 T 23-04-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 RPE_RS11730 6fc99e5739e4ce5dafb1f6d6dbf0eb5f 679 SUPERFAMILY SSF55681 268 562 1.64E-84 T 23-04-2016 RPE_RS11730 6fc99e5739e4ce5dafb1f6d6dbf0eb5f 679 Gene3D G3DSA:3.30.930.10 267 566 2.7E-109 T 23-04-2016 RPE_RS11730 6fc99e5739e4ce5dafb1f6d6dbf0eb5f 679 Gene3D G3DSA:3.30.54.20 155 211 5.6E-20 T 23-04-2016 RPE_RS11730 6fc99e5739e4ce5dafb1f6d6dbf0eb5f 679 PANTHER PTHR11451:SF31 11 667 0.0 T 23-04-2016 RPE_RS11730 6fc99e5739e4ce5dafb1f6d6dbf0eb5f 679 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 97 665 1.5E-200 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RPE_RS11730 6fc99e5739e4ce5dafb1f6d6dbf0eb5f 679 PANTHER PTHR11451 11 667 0.0 T 23-04-2016 RPE_RS11730 6fc99e5739e4ce5dafb1f6d6dbf0eb5f 679 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 195 244 1.2E-13 T 23-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 RPE_RS11730 6fc99e5739e4ce5dafb1f6d6dbf0eb5f 679 Gene3D G3DSA:3.10.20.30 26 89 4.7E-20 T 23-04-2016 IPR012675 Beta-grasp domain RPE_RS11730 6fc99e5739e4ce5dafb1f6d6dbf0eb5f 679 SUPERFAMILY SSF52954 563 667 7.55E-27 T 23-04-2016 IPR004154 Anticodon-binding RPE_RS11730 6fc99e5739e4ce5dafb1f6d6dbf0eb5f 679 Gene3D G3DSA:3.30.980.10 92 154 4.3E-41 T 23-04-2016 RPE_RS11730 6fc99e5739e4ce5dafb1f6d6dbf0eb5f 679 Gene3D G3DSA:3.30.980.10 212 249 4.3E-41 T 23-04-2016 RPE_RS11730 6fc99e5739e4ce5dafb1f6d6dbf0eb5f 679 SUPERFAMILY SSF81271 27 85 8.83E-14 T 23-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 RPE_RS11730 6fc99e5739e4ce5dafb1f6d6dbf0eb5f 679 PRINTS PR01047 Threonyl-tRNA synthetase signature 359 387 6.3E-53 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RPE_RS11730 6fc99e5739e4ce5dafb1f6d6dbf0eb5f 679 PRINTS PR01047 Threonyl-tRNA synthetase signature 570 582 6.3E-53 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RPE_RS11730 6fc99e5739e4ce5dafb1f6d6dbf0eb5f 679 PRINTS PR01047 Threonyl-tRNA synthetase signature 392 415 6.3E-53 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RPE_RS11730 6fc99e5739e4ce5dafb1f6d6dbf0eb5f 679 PRINTS PR01047 Threonyl-tRNA synthetase signature 500 528 6.3E-53 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RPE_RS11730 6fc99e5739e4ce5dafb1f6d6dbf0eb5f 679 PRINTS PR01047 Threonyl-tRNA synthetase signature 543 556 6.3E-53 T 23-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RPE_RS11730 6fc99e5739e4ce5dafb1f6d6dbf0eb5f 679 Gene3D G3DSA:3.40.50.800 567 667 1.7E-28 T 23-04-2016 IPR004154 Anticodon-binding RPE_RS11730 6fc99e5739e4ce5dafb1f6d6dbf0eb5f 679 SMART SM00863 194 244 1.8E-24 T 23-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 RPE_RS11730 6fc99e5739e4ce5dafb1f6d6dbf0eb5f 679 Pfam PF02824 TGS domain 28 85 5.6E-8 T 23-04-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 RPE_RS20375 b9df0f80237087122c579e2e5830ee64 216 Pfam PF01144 Coenzyme A transferase 7 203 1.2E-41 T 23-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RPE_RS20375 b9df0f80237087122c579e2e5830ee64 216 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 3 211 5.6E-98 T 23-04-2016 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 RPE_RS20375 b9df0f80237087122c579e2e5830ee64 216 SUPERFAMILY SSF100950 3 212 1.09E-72 T 23-04-2016 RPE_RS20375 b9df0f80237087122c579e2e5830ee64 216 PANTHER PTHR13707 2 212 3.0E-134 T 23-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RPE_RS20375 b9df0f80237087122c579e2e5830ee64 216 SMART SM00882 6 204 1.6E-79 T 23-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RPE_RS20375 b9df0f80237087122c579e2e5830ee64 216 Gene3D G3DSA:3.40.810.20 3 212 2.3E-92 T 23-04-2016 RPE_RS12425 3e88ca243a3683b514a5903bde781467 672 Gene3D G3DSA:1.10.443.10 333 492 1.6E-11 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 RPE_RS12425 3e88ca243a3683b514a5903bde781467 672 SUPERFAMILY SSF56349 331 495 1.56E-12 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RPE_RS21855 e080a39761d6440aa42a620db31e5a77 557 Pfam PF14362 Domain of unknown function (DUF4407) 16 419 6.0E-27 T 23-04-2016 IPR025519 Protein of unknown function DUF4407 RPE_RS15460 6c6b51dca908f3ac176c3d677a690a35 195 Gene3D G3DSA:3.40.30.10 48 183 4.0E-18 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS15460 6c6b51dca908f3ac176c3d677a690a35 195 Pfam PF13098 Thioredoxin-like domain 61 173 1.0E-13 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS15460 6c6b51dca908f3ac176c3d677a690a35 195 SUPERFAMILY SSF52833 50 191 3.33E-11 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS08355 7a5cffb2227a86918135f8098d3fa665 399 Gene3D G3DSA:3.40.50.410 212 320 6.7E-6 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS08355 7a5cffb2227a86918135f8098d3fa665 399 SUPERFAMILY SSF53300 211 342 6.5E-14 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS08355 7a5cffb2227a86918135f8098d3fa665 399 PANTHER PTHR39338:SF1 1 391 8.7E-180 T 23-04-2016 RPE_RS08355 7a5cffb2227a86918135f8098d3fa665 399 Pfam PF05762 VWA domain containing CoxE-like protein 158 376 5.5E-79 T 23-04-2016 IPR008912 Uncharacterised protein family CoxE-like RPE_RS08355 7a5cffb2227a86918135f8098d3fa665 399 PIRSF PIRSF010256 4 386 7.2E-144 T 23-04-2016 IPR011195 Uncharacterised conserved protein UCP010256 RPE_RS08355 7a5cffb2227a86918135f8098d3fa665 399 PANTHER PTHR39338 1 391 8.7E-180 T 23-04-2016 RPE_RS16575 02145fe3ab5e4a05cc0c0bceac1a6477 421 PANTHER PTHR11712 1 419 2.0E-219 T 23-04-2016 RPE_RS16575 02145fe3ab5e4a05cc0c0bceac1a6477 421 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 2 417 6.3E-191 T 23-04-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 RPE_RS16575 02145fe3ab5e4a05cc0c0bceac1a6477 421 SUPERFAMILY SSF53901 1 261 2.66E-76 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS16575 02145fe3ab5e4a05cc0c0bceac1a6477 421 SMART SM00825 Beta-ketoacyl synthase 4 421 3.7E-16 T 23-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RPE_RS16575 02145fe3ab5e4a05cc0c0bceac1a6477 421 Gene3D G3DSA:3.40.47.10 270 419 5.0E-62 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS16575 02145fe3ab5e4a05cc0c0bceac1a6477 421 SUPERFAMILY SSF53901 222 419 1.28E-73 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS16575 02145fe3ab5e4a05cc0c0bceac1a6477 421 PIRSF PIRSF000447 1 421 2.3E-192 T 23-04-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 RPE_RS16575 02145fe3ab5e4a05cc0c0bceac1a6477 421 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 262 376 1.5E-39 T 23-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal RPE_RS16575 02145fe3ab5e4a05cc0c0bceac1a6477 421 PANTHER PTHR11712:SF273 1 419 2.0E-219 T 23-04-2016 RPE_RS16575 02145fe3ab5e4a05cc0c0bceac1a6477 421 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 161 177 - T 23-04-2016 IPR018201 Beta-ketoacyl synthase, active site RPE_RS16575 02145fe3ab5e4a05cc0c0bceac1a6477 421 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 254 3.0E-59 T 23-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal RPE_RS16575 02145fe3ab5e4a05cc0c0bceac1a6477 421 Gene3D G3DSA:3.40.47.10 1 267 2.8E-75 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS01195 2988fac6d65d0f74bf4b0ba7f94a3757 472 PANTHER PTHR33567:SF1 426 472 1.0E-143 T 23-04-2016 RPE_RS01195 2988fac6d65d0f74bf4b0ba7f94a3757 472 PANTHER PTHR33567:SF1 20 403 1.0E-143 T 23-04-2016 RPE_RS01195 2988fac6d65d0f74bf4b0ba7f94a3757 472 PANTHER PTHR33567 426 472 1.0E-143 T 23-04-2016 RPE_RS01195 2988fac6d65d0f74bf4b0ba7f94a3757 472 PANTHER PTHR33567 20 403 1.0E-143 T 23-04-2016 RPE_RS01195 2988fac6d65d0f74bf4b0ba7f94a3757 472 Pfam PF02417 Chromate transporter 262 462 3.1E-31 T 23-04-2016 IPR003370 Chromate transporter GO:0015109|GO:0015703 RPE_RS01195 2988fac6d65d0f74bf4b0ba7f94a3757 472 Pfam PF02417 Chromate transporter 31 191 3.5E-30 T 23-04-2016 IPR003370 Chromate transporter GO:0015109|GO:0015703 RPE_RS01195 2988fac6d65d0f74bf4b0ba7f94a3757 472 PIRSF PIRSF004810 11 469 2.3E-122 T 23-04-2016 IPR014047 Chromate transporter, long chain RPE_RS01195 2988fac6d65d0f74bf4b0ba7f94a3757 472 TIGRFAM TIGR00937 2A51: chromate efflux transporter 34 403 2.3E-65 T 23-04-2016 IPR014047 Chromate transporter, long chain RPE_RS16285 b4855e3a8228cc6acb05db15c291e542 687 Pfam PF10592 AIPR protein 237 557 2.8E-81 T 23-04-2016 IPR018891 Abortive bacteriophage infection, resistance RPE_RS02050 c896a96250750d88979b3572f45d0672 224 PANTHER PTHR10046 1 212 1.3E-46 T 23-04-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 RPE_RS02050 c896a96250750d88979b3572f45d0672 224 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 16 206 9.2E-27 T 23-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 RPE_RS02050 c896a96250750d88979b3572f45d0672 224 SUPERFAMILY SSF88697 16 207 9.19E-48 T 23-04-2016 IPR015947 PUA-like domain RPE_RS02050 c896a96250750d88979b3572f45d0672 224 PANTHER PTHR10046:SF43 1 212 1.3E-46 T 23-04-2016 RPE_RS02050 c896a96250750d88979b3572f45d0672 224 SMART SM00464 16 210 4.2E-16 T 23-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 RPE_RS12990 cdbe5412790bb43eac7b5b9c0d8b4cee 273 SUPERFAMILY SSF51366 12 262 5.42E-87 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 RPE_RS12990 cdbe5412790bb43eac7b5b9c0d8b4cee 273 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 3 262 36.465 T 23-04-2016 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 RPE_RS12990 cdbe5412790bb43eac7b5b9c0d8b4cee 273 Gene3D G3DSA:3.20.20.70 2 262 7.0E-99 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS12990 cdbe5412790bb43eac7b5b9c0d8b4cee 273 Pfam PF00218 Indole-3-glycerol phosphate synthase 5 260 1.2E-94 T 23-04-2016 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 RPE_RS12990 cdbe5412790bb43eac7b5b9c0d8b4cee 273 PANTHER PTHR22854:SF2 1 262 3.2E-106 T 23-04-2016 RPE_RS12990 cdbe5412790bb43eac7b5b9c0d8b4cee 273 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 56 74 - T 23-04-2016 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 RPE_RS12990 cdbe5412790bb43eac7b5b9c0d8b4cee 273 PANTHER PTHR22854 1 262 3.2E-106 T 23-04-2016 RPE_RS15490 7f1ebee8d0900f77e91d104d122de2e1 329 PANTHER PTHR37955:SF1 9 324 5.6E-33 T 23-04-2016 RPE_RS15490 7f1ebee8d0900f77e91d104d122de2e1 329 Pfam PF03595 Voltage-dependent anion channel 19 315 1.4E-55 T 23-04-2016 IPR004695 Voltage-dependent anion channel GO:0016021|GO:0055085 RPE_RS15490 7f1ebee8d0900f77e91d104d122de2e1 329 PANTHER PTHR37955 9 324 5.6E-33 T 23-04-2016 RPE_RS05355 b1f1fb439f86dac7dc5700705dbfa96d 101 PANTHER PTHR33473 10 101 2.3E-34 T 23-04-2016 RPE_RS05355 b1f1fb439f86dac7dc5700705dbfa96d 101 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 7 95 23.047 T 23-04-2016 IPR022935 ATP-dependent Clp protease adaptor protein ClpS RPE_RS05355 b1f1fb439f86dac7dc5700705dbfa96d 101 Gene3D G3DSA:3.30.1390.10 7 100 3.1E-34 T 23-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RPE_RS05355 b1f1fb439f86dac7dc5700705dbfa96d 101 SUPERFAMILY SSF54736 15 99 6.28E-26 T 23-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RPE_RS05355 b1f1fb439f86dac7dc5700705dbfa96d 101 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 18 95 1.4E-26 T 23-04-2016 IPR003769 Adaptor protein ClpS, core GO:0030163 RPE_RS02745 62a1717a76185251c4f75a7527549904 305 Pfam PF05726 Pirin C-terminal cupin domain 193 292 3.4E-27 T 23-04-2016 IPR008778 Pirin, C-terminal domain RPE_RS02745 62a1717a76185251c4f75a7527549904 305 PANTHER PTHR13903:SF4 18 305 1.2E-137 T 23-04-2016 RPE_RS02745 62a1717a76185251c4f75a7527549904 305 Pfam PF02678 Pirin 35 140 4.6E-33 T 23-04-2016 IPR003829 Pirin, N-terminal domain RPE_RS02745 62a1717a76185251c4f75a7527549904 305 Gene3D G3DSA:2.60.120.10 32 264 9.9E-62 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS02745 62a1717a76185251c4f75a7527549904 305 PIRSF PIRSF006232 16 299 6.3E-88 T 23-04-2016 IPR012093 Pirin RPE_RS02745 62a1717a76185251c4f75a7527549904 305 SUPERFAMILY SSF51182 31 303 3.91E-79 T 23-04-2016 IPR011051 RmlC-like cupin domain RPE_RS02745 62a1717a76185251c4f75a7527549904 305 PANTHER PTHR13903 18 305 1.2E-137 T 23-04-2016 IPR012093 Pirin RPE_RS17410 3fca6700dafae60aa8e6010cda8db4e1 4358 PANTHER PTHR12338:SF6 38 231 1.4E-35 T 23-04-2016 RPE_RS17410 3fca6700dafae60aa8e6010cda8db4e1 4358 PANTHER PTHR12338:SF6 255 666 1.4E-35 T 23-04-2016 RPE_RS17410 3fca6700dafae60aa8e6010cda8db4e1 4358 SMART SM00912 97 212 1.7E-29 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal RPE_RS17410 3fca6700dafae60aa8e6010cda8db4e1 4358 SUPERFAMILY SSF51126 108 216 3.77E-31 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor RPE_RS17410 3fca6700dafae60aa8e6010cda8db4e1 4358 SUPERFAMILY SSF51126 257 436 3.77E-31 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor RPE_RS17410 3fca6700dafae60aa8e6010cda8db4e1 4358 PANTHER PTHR12338 38 231 1.4E-35 T 23-04-2016 RPE_RS17410 3fca6700dafae60aa8e6010cda8db4e1 4358 PANTHER PTHR12338 255 666 1.4E-35 T 23-04-2016 RPE_RS17410 3fca6700dafae60aa8e6010cda8db4e1 4358 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 131 206 1.4E-20 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal RPE_RS17410 3fca6700dafae60aa8e6010cda8db4e1 4358 Pfam PF12545 Filamentous haemagglutinin family outer membrane protein 4145 4253 3.5E-31 T 23-04-2016 IPR021026 Filamentous haemagglutinin family outer membrane protein, domain of unknown function DUF3739 RPE_RS17410 3fca6700dafae60aa8e6010cda8db4e1 4358 Pfam PF05860 haemagglutination activity domain 119 207 1.6E-18 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal RPE_RS21020 a2304d3ee75be443585b65433eb1277a 569 SUPERFAMILY SSF48452 60 231 5.69E-24 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS21020 a2304d3ee75be443585b65433eb1277a 569 SUPERFAMILY SSF52129 324 566 2.24E-46 T 23-04-2016 IPR029030 Caspase-like domain RPE_RS21020 a2304d3ee75be443585b65433eb1277a 569 Gene3D G3DSA:1.25.40.10 46 116 1.8E-13 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS21020 a2304d3ee75be443585b65433eb1277a 569 Gene3D G3DSA:1.25.40.10 117 216 4.3E-26 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS21020 a2304d3ee75be443585b65433eb1277a 569 Pfam PF00656 Caspase domain 333 560 3.4E-30 T 23-04-2016 RPE_RS21020 a2304d3ee75be443585b65433eb1277a 569 Gene3D G3DSA:1.25.40.10 217 290 8.7E-4 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS21020 a2304d3ee75be443585b65433eb1277a 569 Gene3D G3DSA:3.40.50.1460 330 566 3.1E-18 T 23-04-2016 IPR029030 Caspase-like domain RPE_RS21020 a2304d3ee75be443585b65433eb1277a 569 PANTHER PTHR22576 327 566 9.8E-90 T 23-04-2016 RPE_RS21020 a2304d3ee75be443585b65433eb1277a 569 Pfam PF13432 Tetratricopeptide repeat 78 127 2.9E-4 T 23-04-2016 RPE_RS21020 a2304d3ee75be443585b65433eb1277a 569 SMART SM00028 64 97 4.9 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS21020 a2304d3ee75be443585b65433eb1277a 569 SMART SM00028 247 280 27.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS21020 a2304d3ee75be443585b65433eb1277a 569 SMART SM00028 98 131 0.016 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS21020 a2304d3ee75be443585b65433eb1277a 569 SMART SM00028 132 165 6.1E-6 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS21020 a2304d3ee75be443585b65433eb1277a 569 SMART SM00028 200 233 140.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS21020 a2304d3ee75be443585b65433eb1277a 569 SMART SM00028 166 199 0.0029 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS21020 a2304d3ee75be443585b65433eb1277a 569 PANTHER PTHR22576:SF30 327 566 9.8E-90 T 23-04-2016 RPE_RS21020 a2304d3ee75be443585b65433eb1277a 569 Pfam PF13414 TPR repeat 139 180 1.8E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS17650 b0c8ef418ec2a8d32b2f0c1eeba056a9 328 PANTHER PTHR11019:SF60 57 175 7.2E-32 T 23-04-2016 RPE_RS17650 b0c8ef418ec2a8d32b2f0c1eeba056a9 328 PANTHER PTHR11019:SF60 209 328 7.2E-32 T 23-04-2016 RPE_RS17650 b0c8ef418ec2a8d32b2f0c1eeba056a9 328 Pfam PF14525 AraC-binding-like domain 25 200 9.1E-24 T 23-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 RPE_RS17650 b0c8ef418ec2a8d32b2f0c1eeba056a9 328 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 274 318 - T 23-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RPE_RS17650 b0c8ef418ec2a8d32b2f0c1eeba056a9 328 PANTHER PTHR11019 57 175 7.2E-32 T 23-04-2016 RPE_RS17650 b0c8ef418ec2a8d32b2f0c1eeba056a9 328 PANTHER PTHR11019 209 328 7.2E-32 T 23-04-2016 RPE_RS17650 b0c8ef418ec2a8d32b2f0c1eeba056a9 328 SUPERFAMILY SSF46689 274 321 7.62E-6 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS17650 b0c8ef418ec2a8d32b2f0c1eeba056a9 328 SUPERFAMILY SSF46689 221 271 1.93E-6 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS17650 b0c8ef418ec2a8d32b2f0c1eeba056a9 328 Gene3D G3DSA:1.10.10.60 220 275 7.3E-11 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS17650 b0c8ef418ec2a8d32b2f0c1eeba056a9 328 Gene3D G3DSA:1.10.10.60 276 320 1.2E-7 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS17650 b0c8ef418ec2a8d32b2f0c1eeba056a9 328 Pfam PF12833 Helix-turn-helix domain 245 324 1.9E-22 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RPE_RS17650 b0c8ef418ec2a8d32b2f0c1eeba056a9 328 SMART SM00342 237 322 2.0E-23 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RPE_RS04145 dc890114764bf2ad57f26fcd65abe4cd 133 SUPERFAMILY SSF53062 1 128 5.76E-36 T 23-04-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 RPE_RS04145 dc890114764bf2ad57f26fcd65abe4cd 133 Pfam PF03610 PTS system fructose IIA component 3 113 9.2E-27 T 23-04-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 RPE_RS04145 dc890114764bf2ad57f26fcd65abe4cd 133 Gene3D G3DSA:3.40.50.510 1 128 2.6E-39 T 23-04-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 RPE_RS04145 dc890114764bf2ad57f26fcd65abe4cd 133 PANTHER PTHR33799 2 130 6.6E-52 T 23-04-2016 RPE_RS04145 dc890114764bf2ad57f26fcd65abe4cd 133 PANTHER PTHR33799:SF1 2 130 6.6E-52 T 23-04-2016 RPE_RS18225 fe7d94a9bfdef4c24974a76435a58d8f 87 PANTHER PTHR33884 1 85 2.0E-33 T 23-04-2016 RPE_RS18225 fe7d94a9bfdef4c24974a76435a58d8f 87 PANTHER PTHR33884:SF1 1 85 2.0E-33 T 23-04-2016 RPE_RS18225 fe7d94a9bfdef4c24974a76435a58d8f 87 Pfam PF04226 Transglycosylase associated protein 34 80 1.5E-14 T 23-04-2016 IPR007341 Transglycosylase-associated protein GO:0016021 RPE_RS22520 b6e8e90a26eb5513971c22b681168534 181 Gene3D G3DSA:3.90.79.10 11 134 6.0E-25 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS22520 b6e8e90a26eb5513971c22b681168534 181 PANTHER PTHR22769:SF27 3 134 1.4E-36 T 23-04-2016 RPE_RS22520 b6e8e90a26eb5513971c22b681168534 181 PRINTS PR00502 NUDIX hydrolase family signature 53 68 6.6E-6 T 23-04-2016 IPR020476 NUDIX hydrolase RPE_RS22520 b6e8e90a26eb5513971c22b681168534 181 PRINTS PR00502 NUDIX hydrolase family signature 39 53 6.6E-6 T 23-04-2016 IPR020476 NUDIX hydrolase RPE_RS22520 b6e8e90a26eb5513971c22b681168534 181 ProSitePatterns PS00893 Nudix box signature. 44 65 - T 23-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RPE_RS22520 b6e8e90a26eb5513971c22b681168534 181 SUPERFAMILY SSF55811 12 135 7.85E-23 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS22520 b6e8e90a26eb5513971c22b681168534 181 PANTHER PTHR22769 3 134 1.4E-36 T 23-04-2016 RPE_RS22520 b6e8e90a26eb5513971c22b681168534 181 Pfam PF00293 NUDIX domain 14 125 1.2E-13 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RPE_RS04500 2d0a3bde25405e44388b0657bb57361f 280 SUPERFAMILY SSF51735 5 256 3.44E-77 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS04500 2d0a3bde25405e44388b0657bb57361f 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.1E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS04500 2d0a3bde25405e44388b0657bb57361f 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 1.1E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS04500 2d0a3bde25405e44388b0657bb57361f 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 1.1E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS04500 2d0a3bde25405e44388b0657bb57361f 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.1E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS04500 2d0a3bde25405e44388b0657bb57361f 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 1.1E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS04500 2d0a3bde25405e44388b0657bb57361f 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 1.1E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS04500 2d0a3bde25405e44388b0657bb57361f 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 6.2E-10 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS04500 2d0a3bde25405e44388b0657bb57361f 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 6.2E-10 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS04500 2d0a3bde25405e44388b0657bb57361f 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 6.2E-10 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS04500 2d0a3bde25405e44388b0657bb57361f 280 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 256 2.0E-62 T 23-04-2016 RPE_RS04500 2d0a3bde25405e44388b0657bb57361f 280 Gene3D G3DSA:3.40.50.720 1 265 4.3E-80 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS04500 2d0a3bde25405e44388b0657bb57361f 280 PANTHER PTHR24321 2 257 1.8E-53 T 23-04-2016 RPE_RS04500 2d0a3bde25405e44388b0657bb57361f 280 PANTHER PTHR24321:SF6 2 257 1.8E-53 T 23-04-2016 RPE_RS04500 2d0a3bde25405e44388b0657bb57361f 280 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RPE_RS07485 97567e4d187fe4314d5c5b410383c0ac 172 PANTHER PTHR36449 1 160 5.2E-48 T 23-04-2016 RPE_RS07485 97567e4d187fe4314d5c5b410383c0ac 172 SUPERFAMILY SSF55729 20 148 7.09E-15 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS07485 97567e4d187fe4314d5c5b410383c0ac 172 Gene3D G3DSA:3.40.630.30 24 147 1.0E-12 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS07485 97567e4d187fe4314d5c5b410383c0ac 172 Pfam PF00583 Acetyltransferase (GNAT) family 57 147 5.3E-7 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RPE_RS14800 9bc9d598cc5bf08ec30af014ee86092c 176 PANTHER PTHR30353 1 174 3.2E-55 T 23-04-2016 IPR032818 DedA family RPE_RS14800 9bc9d598cc5bf08ec30af014ee86092c 176 PANTHER PTHR30353:SF5 1 174 3.2E-55 T 23-04-2016 RPE_RS14800 9bc9d598cc5bf08ec30af014ee86092c 176 Pfam PF09335 SNARE associated Golgi protein 39 163 2.4E-15 T 23-04-2016 IPR032816 SNARE associated Golgi protein RPE_RS02890 e712fb68c8c1e8d21a995323a693ee7c 345 SUPERFAMILY SSF52402 20 144 2.48E-53 T 23-04-2016 RPE_RS02890 e712fb68c8c1e8d21a995323a693ee7c 345 SUPERFAMILY SSF52402 184 329 2.48E-53 T 23-04-2016 RPE_RS02890 e712fb68c8c1e8d21a995323a693ee7c 345 Pfam PF02540 NAD synthase 181 299 8.5E-26 T 23-04-2016 IPR022310 NAD/GMP synthase RPE_RS02890 e712fb68c8c1e8d21a995323a693ee7c 345 Pfam PF02540 NAD synthase 33 116 1.8E-17 T 23-04-2016 IPR022310 NAD/GMP synthase RPE_RS02890 e712fb68c8c1e8d21a995323a693ee7c 345 Hamap MF_00193 NH(3)-dependent NAD(+) synthetase [nadE]. 25 333 29.488 T 23-04-2016 IPR022926 NH(3)-dependent NAD(+) synthetase GO:0008795|GO:0009435 KEGG: 00760+6.3.1.5|UniPathway: UPA00253 RPE_RS02890 e712fb68c8c1e8d21a995323a693ee7c 345 TIGRFAM TIGR00552 nadE: NAD+ synthetase 180 293 1.0E-27 T 23-04-2016 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|UniPathway: UPA00253 RPE_RS02890 e712fb68c8c1e8d21a995323a693ee7c 345 PANTHER PTHR23090 172 325 7.0E-40 T 23-04-2016 RPE_RS02890 e712fb68c8c1e8d21a995323a693ee7c 345 PANTHER PTHR23090 13 136 7.0E-40 T 23-04-2016 RPE_RS02890 e712fb68c8c1e8d21a995323a693ee7c 345 Gene3D G3DSA:3.40.50.620 19 118 1.3E-57 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS02890 e712fb68c8c1e8d21a995323a693ee7c 345 Gene3D G3DSA:3.40.50.620 167 320 1.3E-57 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS20805 e4f2fb78d4a42ff0d5b60ef80e3ede64 157 SUPERFAMILY SSF55729 7 153 1.89E-28 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS20805 e4f2fb78d4a42ff0d5b60ef80e3ede64 157 Gene3D G3DSA:3.40.630.30 7 157 2.4E-41 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS20805 e4f2fb78d4a42ff0d5b60ef80e3ede64 157 PANTHER PTHR23091 1 148 3.1E-26 T 23-04-2016 RPE_RS20805 e4f2fb78d4a42ff0d5b60ef80e3ede64 157 Pfam PF00583 Acetyltransferase (GNAT) family 67 147 1.1E-15 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RPE_RS00515 0a675a24b23e6cd866de1a0fb4cf89e9 237 SUPERFAMILY SSF50882 38 133 3.66E-21 T 23-04-2016 IPR016085 Protease inhibitor, beta-barrel domain GO:0004866 RPE_RS00515 0a675a24b23e6cd866de1a0fb4cf89e9 237 SUPERFAMILY SSF50882 140 236 2.28E-24 T 23-04-2016 IPR016085 Protease inhibitor, beta-barrel domain GO:0004866 RPE_RS00515 0a675a24b23e6cd866de1a0fb4cf89e9 237 Pfam PF02974 Protease inhibitor Inh 143 236 1.4E-11 T 23-04-2016 IPR021140 Alkaline proteinase inhibitor/ Outer membrane lipoprotein Omp19 RPE_RS00515 0a675a24b23e6cd866de1a0fb4cf89e9 237 Pfam PF02974 Protease inhibitor Inh 37 126 2.5E-19 T 23-04-2016 IPR021140 Alkaline proteinase inhibitor/ Outer membrane lipoprotein Omp19 RPE_RS00515 0a675a24b23e6cd866de1a0fb4cf89e9 237 Gene3D G3DSA:2.40.128.10 38 133 5.3E-9 T 23-04-2016 IPR003086 Metalloprotease inhibitor I38 GO:0004866|GO:0030288 RPE_RS00515 0a675a24b23e6cd866de1a0fb4cf89e9 237 Gene3D G3DSA:2.40.128.10 143 236 1.7E-8 T 23-04-2016 IPR003086 Metalloprotease inhibitor I38 GO:0004866|GO:0030288 RPE_RS11005 528af5b7e8071fb4224c558e54393669 339 Gene3D G3DSA:1.10.1040.10 29 326 5.0E-115 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RPE_RS11005 528af5b7e8071fb4224c558e54393669 339 PANTHER PTHR21371 1 338 1.7E-190 T 23-04-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RPE_RS11005 528af5b7e8071fb4224c558e54393669 339 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 14 178 6.2E-74 T 23-04-2016 IPR013116 Acetohydroxy acid isomeroreductase, NADPH-binding domain KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RPE_RS11005 528af5b7e8071fb4224c558e54393669 339 Hamap MF_00435 Ketol-acid reductoisomerase [ilvC]. 1 329 45.446 T 23-04-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RPE_RS11005 528af5b7e8071fb4224c558e54393669 339 SUPERFAMILY SSF48179 184 333 4.76E-71 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RPE_RS11005 528af5b7e8071fb4224c558e54393669 339 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 184 327 8.6E-66 T 23-04-2016 IPR000506 Acetohydroxy acid isomeroreductase C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RPE_RS11005 528af5b7e8071fb4224c558e54393669 339 SUPERFAMILY SSF51735 1 183 9.65E-75 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS11005 528af5b7e8071fb4224c558e54393669 339 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 14 328 1.8E-133 T 23-04-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RPE_RS14415 9e70fec85aab7b9408dfc81042cad1e8 265 Gene3D G3DSA:3.60.15.10 2 264 2.5E-64 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS14415 9e70fec85aab7b9408dfc81042cad1e8 265 PANTHER PTHR12553 5 265 1.8E-60 T 23-04-2016 RPE_RS14415 9e70fec85aab7b9408dfc81042cad1e8 265 PANTHER PTHR12553:SF7 5 265 1.8E-60 T 23-04-2016 RPE_RS14415 9e70fec85aab7b9408dfc81042cad1e8 265 SUPERFAMILY SSF56281 5 264 6.55E-42 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS14415 9e70fec85aab7b9408dfc81042cad1e8 265 Pfam PF12706 Beta-lactamase superfamily domain 51 234 4.1E-36 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS12270 63825a3659a89ea202cba735d45e81a2 799 Pfam PF15615 TerB-C domain 661 789 1.2E-24 T 23-04-2016 IPR028932 TerB-C domain RPE_RS12270 63825a3659a89ea202cba735d45e81a2 799 SUPERFAMILY SSF158682 502 625 3.01E-14 T 23-04-2016 IPR029024 TerB-like RPE_RS12270 63825a3659a89ea202cba735d45e81a2 799 Gene3D G3DSA:1.10.3680.10 504 624 3.6E-14 T 23-04-2016 IPR029024 TerB-like RPE_RS12270 63825a3659a89ea202cba735d45e81a2 799 Pfam PF05099 Tellurite resistance protein TerB 508 617 4.7E-8 T 23-04-2016 IPR007791 Co-chaperone DjlA, N-terminal RPE_RS12270 63825a3659a89ea202cba735d45e81a2 799 Pfam PF13208 TerB N-terminal domain 100 301 4.1E-45 T 23-04-2016 IPR025266 TerB, N-terminal RPE_RS23575 6cb16230b1f69c01b25226cc7f2576d3 262 Gene3D G3DSA:3.30.540.10 5 152 1.0E-50 T 23-04-2016 RPE_RS23575 6cb16230b1f69c01b25226cc7f2576d3 262 Gene3D G3DSA:3.40.190.80 153 260 1.1E-31 T 23-04-2016 RPE_RS23575 6cb16230b1f69c01b25226cc7f2576d3 262 SUPERFAMILY SSF56655 5 259 1.19E-82 T 23-04-2016 RPE_RS23575 6cb16230b1f69c01b25226cc7f2576d3 262 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 83 96 - T 23-04-2016 IPR020583 Inositol monophosphatase, metal-binding site RPE_RS23575 6cb16230b1f69c01b25226cc7f2576d3 262 PRINTS PR00377 Inositol monophosphatase superfamily signature 210 234 4.5E-54 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RPE_RS23575 6cb16230b1f69c01b25226cc7f2576d3 262 PRINTS PR00377 Inositol monophosphatase superfamily signature 40 60 4.5E-54 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RPE_RS23575 6cb16230b1f69c01b25226cc7f2576d3 262 PRINTS PR00377 Inositol monophosphatase superfamily signature 132 155 4.5E-54 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RPE_RS23575 6cb16230b1f69c01b25226cc7f2576d3 262 PRINTS PR00377 Inositol monophosphatase superfamily signature 179 200 4.5E-54 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RPE_RS23575 6cb16230b1f69c01b25226cc7f2576d3 262 PRINTS PR00377 Inositol monophosphatase superfamily signature 83 99 4.5E-54 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RPE_RS23575 6cb16230b1f69c01b25226cc7f2576d3 262 PRINTS PR00377 Inositol monophosphatase superfamily signature 62 78 4.5E-54 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RPE_RS23575 6cb16230b1f69c01b25226cc7f2576d3 262 Pfam PF00459 Inositol monophosphatase family 5 254 3.1E-60 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RPE_RS23575 6cb16230b1f69c01b25226cc7f2576d3 262 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 213 227 - T 23-04-2016 IPR020550 Inositol monophosphatase, conserved site GO:0046854 RPE_RS23575 6cb16230b1f69c01b25226cc7f2576d3 262 PRINTS PR01959 SuhB family inositol monophosphatase signature 200 212 3.8E-21 T 23-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 RPE_RS23575 6cb16230b1f69c01b25226cc7f2576d3 262 PRINTS PR01959 SuhB family inositol monophosphatase signature 19 41 3.8E-21 T 23-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 RPE_RS23575 6cb16230b1f69c01b25226cc7f2576d3 262 PRINTS PR01959 SuhB family inositol monophosphatase signature 158 184 3.8E-21 T 23-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 RPE_RS23575 6cb16230b1f69c01b25226cc7f2576d3 262 PRINTS PR01959 SuhB family inositol monophosphatase signature 106 125 3.8E-21 T 23-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 RPE_RS23575 6cb16230b1f69c01b25226cc7f2576d3 262 PANTHER PTHR20854 1 259 4.7E-88 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RPE_RS23575 6cb16230b1f69c01b25226cc7f2576d3 262 PANTHER PTHR20854:SF4 1 259 4.7E-88 T 23-04-2016 RPE_RS23235 eea6b8d7ed3f33ad328d96b53041b935 158 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 114 132 - T 23-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 RPE_RS23235 eea6b8d7ed3f33ad328d96b53041b935 158 PANTHER PTHR10371 7 155 4.5E-44 T 23-04-2016 RPE_RS23235 eea6b8d7ed3f33ad328d96b53041b935 158 Gene3D G3DSA:3.40.30.10 77 155 1.7E-4 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS23235 eea6b8d7ed3f33ad328d96b53041b935 158 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 14 156 1.8E-41 T 23-04-2016 RPE_RS23235 eea6b8d7ed3f33ad328d96b53041b935 158 PIRSF PIRSF000216 4 158 3.5E-44 T 23-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 RPE_RS23235 eea6b8d7ed3f33ad328d96b53041b935 158 SUPERFAMILY SSF52833 6 155 6.37E-44 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS14955 3b011a20d6a9033f6cca981b3b33a380 830 PANTHER PTHR32282 1 319 1.3E-268 T 23-04-2016 RPE_RS14955 3b011a20d6a9033f6cca981b3b33a380 830 PANTHER PTHR32282 656 810 1.3E-268 T 23-04-2016 RPE_RS14955 3b011a20d6a9033f6cca981b3b33a380 830 PANTHER PTHR32282 444 634 1.3E-268 T 23-04-2016 RPE_RS14955 3b011a20d6a9033f6cca981b3b33a380 830 SUPERFAMILY SSF53955 46 259 1.69E-73 T 23-04-2016 IPR023346 Lysozyme-like domain RPE_RS14955 3b011a20d6a9033f6cca981b3b33a380 830 Gene3D G3DSA:1.10.3810.10 60 238 3.3E-68 T 23-04-2016 RPE_RS14955 3b011a20d6a9033f6cca981b3b33a380 830 SUPERFAMILY SSF56601 445 803 8.05E-137 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS14955 3b011a20d6a9033f6cca981b3b33a380 830 SUPERFAMILY SSF56601 270 322 8.05E-137 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS14955 3b011a20d6a9033f6cca981b3b33a380 830 SUPERFAMILY SSF56601 218 240 8.05E-137 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS14955 3b011a20d6a9033f6cca981b3b33a380 830 PANTHER PTHR32282:SF5 1 319 1.3E-268 T 23-04-2016 RPE_RS14955 3b011a20d6a9033f6cca981b3b33a380 830 PANTHER PTHR32282:SF5 656 810 1.3E-268 T 23-04-2016 RPE_RS14955 3b011a20d6a9033f6cca981b3b33a380 830 PANTHER PTHR32282:SF5 444 634 1.3E-268 T 23-04-2016 RPE_RS14955 3b011a20d6a9033f6cca981b3b33a380 830 Pfam PF17092 Penicillin-binding protein OB-like domain 325 448 1.5E-21 T 23-04-2016 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00230+2.4.2.-|KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00514+2.4.2.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.-|UniPathway: UPA00219 RPE_RS14955 3b011a20d6a9033f6cca981b3b33a380 830 Gene3D G3DSA:3.40.710.10 443 798 4.7E-141 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS14955 3b011a20d6a9033f6cca981b3b33a380 830 Gene3D G3DSA:3.40.710.10 239 322 4.7E-141 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS14955 3b011a20d6a9033f6cca981b3b33a380 830 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 69 748 3.8E-187 T 23-04-2016 RPE_RS14955 3b011a20d6a9033f6cca981b3b33a380 830 Pfam PF00912 Transglycosylase 59 236 2.0E-59 T 23-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 RPE_RS14955 3b011a20d6a9033f6cca981b3b33a380 830 Pfam PF00905 Penicillin binding protein transpeptidase domain 450 744 2.4E-42 T 23-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RPE_RS11220 de63c96127f33cfad00627090ce89af2 1276 PANTHER PTHR23304:SF96 11 1271 0.0 T 23-04-2016 RPE_RS11220 de63c96127f33cfad00627090ce89af2 1276 Pfam PF02514 CobN/Magnesium Chelatase 139 1260 0.0 T 23-04-2016 IPR003672 CobN/magnesium chelatase GO:0009058 RPE_RS11220 de63c96127f33cfad00627090ce89af2 1276 TIGRFAM TIGR02257 cobalto_cobN: cobaltochelatase, CobN subunit 1 1268 0.0 T 23-04-2016 IPR011953 Cobaltochelatase, CobN subunit GO:0009236|GO:0051116 RPE_RS11220 de63c96127f33cfad00627090ce89af2 1276 PANTHER PTHR23304 11 1271 0.0 T 23-04-2016 RPE_RS05265 b70178d826b6e6e3ca0c3dd45cc17f20 269 Pfam PF13406 Transglycosylase SLT domain 28 234 2.2E-74 T 23-04-2016 IPR031304 Transglycosylase SLT domain 2 RPE_RS05265 b70178d826b6e6e3ca0c3dd45cc17f20 269 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 27 232 2.8E-81 T 23-04-2016 IPR011970 Lytic murein transglycosylase RPE_RS05265 b70178d826b6e6e3ca0c3dd45cc17f20 269 Gene3D G3DSA:1.10.530.10 73 129 6.1E-28 T 23-04-2016 RPE_RS05265 b70178d826b6e6e3ca0c3dd45cc17f20 269 Gene3D G3DSA:1.10.530.10 211 233 6.1E-28 T 23-04-2016 RPE_RS05265 b70178d826b6e6e3ca0c3dd45cc17f20 269 PANTHER PTHR30163:SF2 9 264 1.7E-99 T 23-04-2016 RPE_RS05265 b70178d826b6e6e3ca0c3dd45cc17f20 269 PANTHER PTHR30163 9 264 1.7E-99 T 23-04-2016 IPR011757 Lytic transglycosylase MltB RPE_RS05265 b70178d826b6e6e3ca0c3dd45cc17f20 269 SUPERFAMILY SSF53955 12 268 5.06E-75 T 23-04-2016 IPR023346 Lysozyme-like domain RPE_RS10650 cfb4fea2913df1d1483f4f3c60834c80 429 SUPERFAMILY SSF103473 20 408 6.28E-62 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS10650 cfb4fea2913df1d1483f4f3c60834c80 429 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 22 401 9.0E-75 T 23-04-2016 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 RPE_RS10650 cfb4fea2913df1d1483f4f3c60834c80 429 Gene3D G3DSA:1.20.1250.20 23 209 3.0E-32 T 23-04-2016 RPE_RS10650 cfb4fea2913df1d1483f4f3c60834c80 429 PANTHER PTHR23502:SF39 22 429 7.1E-129 T 23-04-2016 RPE_RS10650 cfb4fea2913df1d1483f4f3c60834c80 429 Gene3D G3DSA:1.20.1250.20 224 410 4.4E-9 T 23-04-2016 RPE_RS10650 cfb4fea2913df1d1483f4f3c60834c80 429 ProSitePatterns PS00216 Sugar transport proteins signature 1. 78 94 - T 23-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RPE_RS10650 cfb4fea2913df1d1483f4f3c60834c80 429 PANTHER PTHR23502 22 429 7.1E-129 T 23-04-2016 RPE_RS10650 cfb4fea2913df1d1483f4f3c60834c80 429 Pfam PF07690 Major Facilitator Superfamily 30 364 5.0E-41 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RPE_RS10980 67a8a43b5cf50fd5f695fc39e6eb467a 180 Gene3D G3DSA:3.30.70.260 18 95 6.4E-33 T 23-04-2016 RPE_RS10980 67a8a43b5cf50fd5f695fc39e6eb467a 180 PANTHER PTHR30239 1 180 6.7E-79 T 23-04-2016 RPE_RS10980 67a8a43b5cf50fd5f695fc39e6eb467a 180 Pfam PF10369 Small subunit of acetolactate synthase 103 176 7.0E-25 T 23-04-2016 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RPE_RS10980 67a8a43b5cf50fd5f695fc39e6eb467a 180 Pfam PF01842 ACT domain 20 79 9.7E-12 T 23-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 RPE_RS10980 67a8a43b5cf50fd5f695fc39e6eb467a 180 Gene3D G3DSA:3.30.70.1150 102 179 2.4E-28 T 23-04-2016 RPE_RS10980 67a8a43b5cf50fd5f695fc39e6eb467a 180 SUPERFAMILY SSF55021 99 178 4.58E-25 T 23-04-2016 RPE_RS10980 67a8a43b5cf50fd5f695fc39e6eb467a 180 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 19 93 8.0E-37 T 23-04-2016 RPE_RS10980 67a8a43b5cf50fd5f695fc39e6eb467a 180 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 19 177 2.0E-54 T 23-04-2016 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RPE_RS10980 67a8a43b5cf50fd5f695fc39e6eb467a 180 SUPERFAMILY SSF55021 20 94 3.72E-18 T 23-04-2016 RPE_RS19530 d7cc463711ca8b017fe2f9a9bfd6212a 379 Pfam PF04443 Acyl-protein synthetase, LuxE 26 373 2.5E-41 T 23-04-2016 IPR007534 Acyl-protein synthetase, LuxE GO:0008218|GO:0047474 MetaCyc: PWY-7723|UniPathway: UPA00569 RPE_RS01825 39e4399aae6686893a552ad107fd6331 318 PANTHER PTHR10285:SF7 279 311 1.3E-156 T 23-04-2016 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 RPE_RS01825 39e4399aae6686893a552ad107fd6331 318 PANTHER PTHR10285:SF7 2 263 1.3E-156 T 23-04-2016 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 RPE_RS01825 39e4399aae6686893a552ad107fd6331 318 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 91 244 7.4E-12 T 23-04-2016 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0008152|GO:0016301 RPE_RS01825 39e4399aae6686893a552ad107fd6331 318 SUPERFAMILY SSF52540 9 316 6.2E-74 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01825 39e4399aae6686893a552ad107fd6331 318 Hamap MF_00215 Pantothenate kinase [coaA]. 1 318 185.822 T 23-04-2016 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 RPE_RS01825 39e4399aae6686893a552ad107fd6331 318 PIRSF PIRSF000545 2 318 1.7E-146 T 23-04-2016 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 RPE_RS01825 39e4399aae6686893a552ad107fd6331 318 PANTHER PTHR10285 279 311 1.3E-156 T 23-04-2016 RPE_RS01825 39e4399aae6686893a552ad107fd6331 318 PANTHER PTHR10285 2 263 1.3E-156 T 23-04-2016 RPE_RS01825 39e4399aae6686893a552ad107fd6331 318 Gene3D G3DSA:3.40.50.300 12 316 2.8E-105 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01825 39e4399aae6686893a552ad107fd6331 318 TIGRFAM TIGR00554 panK_bact: pantothenate kinase 12 317 1.1E-132 T 23-04-2016 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 RPE_RS21550 113c535b4c86d458bf2a61fd62ca905a 488 PIRSF PIRSF019381 2 488 2.3E-169 T 23-04-2016 IPR007413 Protein of unknown function DUF463, YcjX-like protein RPE_RS21550 113c535b4c86d458bf2a61fd62ca905a 488 Pfam PF04317 YcjX-like family, DUF463 31 487 1.9E-169 T 23-04-2016 IPR007413 Protein of unknown function DUF463, YcjX-like protein RPE_RS21550 113c535b4c86d458bf2a61fd62ca905a 488 PANTHER PTHR38605:SF1 2 488 2.3E-206 T 23-04-2016 RPE_RS21550 113c535b4c86d458bf2a61fd62ca905a 488 PANTHER PTHR38605 2 488 2.3E-206 T 23-04-2016 RPE_RS04025 c8952697734ed151b8b0b42a3d327092 489 Pfam PF08323 Starch synthase catalytic domain 7 239 2.5E-69 T 23-04-2016 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00164 RPE_RS04025 c8952697734ed151b8b0b42a3d327092 489 Gene3D G3DSA:3.40.50.2000 254 460 1.3E-66 T 23-04-2016 RPE_RS04025 c8952697734ed151b8b0b42a3d327092 489 PANTHER PTHR12526 7 483 1.5E-129 T 23-04-2016 RPE_RS04025 c8952697734ed151b8b0b42a3d327092 489 Pfam PF00534 Glycosyl transferases group 1 285 440 5.7E-14 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 RPE_RS04025 c8952697734ed151b8b0b42a3d327092 489 Hamap MF_00484 Glycogen synthase [glgA]. 4 479 45.055 T 23-04-2016 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00164 RPE_RS04025 c8952697734ed151b8b0b42a3d327092 489 SUPERFAMILY SSF53756 8 482 1.43E-120 T 23-04-2016 RPE_RS04025 c8952697734ed151b8b0b42a3d327092 489 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 5 479 1.4E-163 T 23-04-2016 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00164 RPE_RS04025 c8952697734ed151b8b0b42a3d327092 489 PANTHER PTHR12526:SF17 7 483 1.5E-129 T 23-04-2016 RPE_RS20345 b20a8a72c4e9be3c04ff943b23d513a7 366 Gene3D G3DSA:2.60.40.420 173 329 1.0E-76 T 23-04-2016 IPR008972 Cupredoxin RPE_RS20345 b20a8a72c4e9be3c04ff943b23d513a7 366 Gene3D G3DSA:2.60.40.420 32 172 1.1E-27 T 23-04-2016 IPR008972 Cupredoxin RPE_RS20345 b20a8a72c4e9be3c04ff943b23d513a7 366 TIGRFAM TIGR02376 Cu_nitrite_red: nitrite reductase, copper-containing 30 355 3.2E-162 T 23-04-2016 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 RPE_RS20345 b20a8a72c4e9be3c04ff943b23d513a7 366 PANTHER PTHR11709 4 27 6.8E-34 T 23-04-2016 RPE_RS20345 b20a8a72c4e9be3c04ff943b23d513a7 366 PANTHER PTHR11709 54 259 6.8E-34 T 23-04-2016 RPE_RS20345 b20a8a72c4e9be3c04ff943b23d513a7 366 PANTHER PTHR11709:SF84 4 27 6.8E-34 T 23-04-2016 RPE_RS20345 b20a8a72c4e9be3c04ff943b23d513a7 366 PANTHER PTHR11709:SF84 54 259 6.8E-34 T 23-04-2016 RPE_RS20345 b20a8a72c4e9be3c04ff943b23d513a7 366 Pfam PF00394 Multicopper oxidase 193 344 3.7E-20 T 23-04-2016 IPR001117 Multicopper oxidase, type 1 GO:0016491|GO:0055114 RPE_RS20345 b20a8a72c4e9be3c04ff943b23d513a7 366 Pfam PF07732 Multicopper oxidase 71 177 1.3E-11 T 23-04-2016 IPR011707 Multicopper oxidase, type 3 GO:0005507 RPE_RS20345 b20a8a72c4e9be3c04ff943b23d513a7 366 SUPERFAMILY SSF49503 29 181 1.36E-37 T 23-04-2016 IPR008972 Cupredoxin RPE_RS20345 b20a8a72c4e9be3c04ff943b23d513a7 366 PRINTS PR00695 Copper containing nitrite reductase signature 159 175 5.1E-63 T 23-04-2016 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 RPE_RS20345 b20a8a72c4e9be3c04ff943b23d513a7 366 PRINTS PR00695 Copper containing nitrite reductase signature 140 155 5.1E-63 T 23-04-2016 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 RPE_RS20345 b20a8a72c4e9be3c04ff943b23d513a7 366 PRINTS PR00695 Copper containing nitrite reductase signature 115 134 5.1E-63 T 23-04-2016 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 RPE_RS20345 b20a8a72c4e9be3c04ff943b23d513a7 366 PRINTS PR00695 Copper containing nitrite reductase signature 80 96 5.1E-63 T 23-04-2016 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 RPE_RS20345 b20a8a72c4e9be3c04ff943b23d513a7 366 PRINTS PR00695 Copper containing nitrite reductase signature 53 71 5.1E-63 T 23-04-2016 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 RPE_RS20345 b20a8a72c4e9be3c04ff943b23d513a7 366 PRINTS PR00695 Copper containing nitrite reductase signature 98 115 5.1E-63 T 23-04-2016 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 RPE_RS20345 b20a8a72c4e9be3c04ff943b23d513a7 366 SUPERFAMILY SSF49503 184 354 2.01E-75 T 23-04-2016 IPR008972 Cupredoxin RPE_RS07250 348d565ac7245f2bbe356e827d5fd60f 151 Pfam PF01575 MaoC like domain 18 111 8.3E-13 T 23-04-2016 IPR002539 MaoC-like domain RPE_RS07250 348d565ac7245f2bbe356e827d5fd60f 151 Gene3D G3DSA:3.10.129.10 4 148 3.7E-32 T 23-04-2016 IPR029069 HotDog domain RPE_RS07250 348d565ac7245f2bbe356e827d5fd60f 151 PANTHER PTHR13078 3 151 1.1E-34 T 23-04-2016 RPE_RS07250 348d565ac7245f2bbe356e827d5fd60f 151 SUPERFAMILY SSF54637 4 149 1.66E-29 T 23-04-2016 IPR029069 HotDog domain RPE_RS01565 c86a6d6c2b437f0a21fc32b1375fe569 222 PIRSF PIRSF002764 1 222 8.9E-72 T 23-04-2016 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria RPE_RS01565 c86a6d6c2b437f0a21fc32b1375fe569 222 Pfam PF03379 CcmB protein 5 218 2.5E-81 T 23-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS01565 c86a6d6c2b437f0a21fc32b1375fe569 222 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 7 218 4.7E-85 T 23-04-2016 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria RPE_RS01565 c86a6d6c2b437f0a21fc32b1375fe569 222 PANTHER PTHR30070 1 222 2.0E-59 T 23-04-2016 RPE_RS01565 c86a6d6c2b437f0a21fc32b1375fe569 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 157 176 3.3E-65 T 23-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS01565 c86a6d6c2b437f0a21fc32b1375fe569 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 77 100 3.3E-65 T 23-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS01565 c86a6d6c2b437f0a21fc32b1375fe569 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 54 71 3.3E-65 T 23-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS01565 c86a6d6c2b437f0a21fc32b1375fe569 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 28 49 3.3E-65 T 23-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS01565 c86a6d6c2b437f0a21fc32b1375fe569 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 102 120 3.3E-65 T 23-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS01565 c86a6d6c2b437f0a21fc32b1375fe569 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 195 218 3.3E-65 T 23-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS01565 c86a6d6c2b437f0a21fc32b1375fe569 222 PANTHER PTHR30070:SF1 1 222 2.0E-59 T 23-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RPE_RS08985 9d53f64fd07f5702edec516901d9c73b 296 PANTHER PTHR30126:SF11 1 296 1.0E-91 T 23-04-2016 RPE_RS08985 9d53f64fd07f5702edec516901d9c73b 296 SUPERFAMILY SSF53850 90 295 2.67E-43 T 23-04-2016 RPE_RS08985 9d53f64fd07f5702edec516901d9c73b 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 7.6E-20 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS08985 9d53f64fd07f5702edec516901d9c73b 296 Pfam PF03466 LysR substrate binding domain 88 293 2.2E-45 T 23-04-2016 IPR005119 LysR, substrate-binding RPE_RS08985 9d53f64fd07f5702edec516901d9c73b 296 SUPERFAMILY SSF46785 1 110 8.48E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS08985 9d53f64fd07f5702edec516901d9c73b 296 Gene3D G3DSA:1.10.10.10 1 85 3.0E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS08985 9d53f64fd07f5702edec516901d9c73b 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 8.5E-8 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS08985 9d53f64fd07f5702edec516901d9c73b 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 8.5E-8 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS08985 9d53f64fd07f5702edec516901d9c73b 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 8.5E-8 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS08985 9d53f64fd07f5702edec516901d9c73b 296 Gene3D G3DSA:3.40.190.10 176 263 1.5E-17 T 23-04-2016 RPE_RS08985 9d53f64fd07f5702edec516901d9c73b 296 Gene3D G3DSA:3.40.190.10 90 175 3.3E-21 T 23-04-2016 RPE_RS08985 9d53f64fd07f5702edec516901d9c73b 296 PANTHER PTHR30126 1 296 1.0E-91 T 23-04-2016 RPE_RS20825 c8a03feba8ddea20ffba37e7fbc7f9da 417 PANTHER PTHR23505:SF8 5 414 1.0E-139 T 23-04-2016 RPE_RS20825 c8a03feba8ddea20ffba37e7fbc7f9da 417 PANTHER PTHR23505 5 414 1.0E-139 T 23-04-2016 RPE_RS20825 c8a03feba8ddea20ffba37e7fbc7f9da 417 Gene3D G3DSA:1.20.1250.20 37 208 4.0E-19 T 23-04-2016 RPE_RS20825 c8a03feba8ddea20ffba37e7fbc7f9da 417 Gene3D G3DSA:1.20.1250.20 239 414 6.4E-19 T 23-04-2016 RPE_RS20825 c8a03feba8ddea20ffba37e7fbc7f9da 417 SUPERFAMILY SSF103473 30 411 7.98E-54 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS20825 c8a03feba8ddea20ffba37e7fbc7f9da 417 Pfam PF07690 Major Facilitator Superfamily 41 277 2.1E-24 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RPE_RS04600 746afbe4bf933d999b0eeaff947e0518 437 SUPERFAMILY SSF56529 143 436 2.35E-98 T 23-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RPE_RS04600 746afbe4bf933d999b0eeaff947e0518 437 Gene3D G3DSA:2.30.30.230 25 140 9.3E-39 T 23-04-2016 IPR015377 Fumarylacetoacetase, N-terminal GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 RPE_RS04600 746afbe4bf933d999b0eeaff947e0518 437 SUPERFAMILY SSF63433 24 139 1.31E-40 T 23-04-2016 IPR015377 Fumarylacetoacetase, N-terminal GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 RPE_RS04600 746afbe4bf933d999b0eeaff947e0518 437 PANTHER PTHR11820 20 108 9.5E-183 T 23-04-2016 RPE_RS04600 746afbe4bf933d999b0eeaff947e0518 437 PANTHER PTHR11820 139 437 9.5E-183 T 23-04-2016 RPE_RS04600 746afbe4bf933d999b0eeaff947e0518 437 PANTHER PTHR11820:SF1 20 108 9.5E-183 T 23-04-2016 IPR005959 Fumarylacetoacetase GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 RPE_RS04600 746afbe4bf933d999b0eeaff947e0518 437 PANTHER PTHR11820:SF1 139 437 9.5E-183 T 23-04-2016 IPR005959 Fumarylacetoacetase GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 RPE_RS04600 746afbe4bf933d999b0eeaff947e0518 437 Gene3D G3DSA:3.90.850.10 141 429 2.1E-109 T 23-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RPE_RS04600 746afbe4bf933d999b0eeaff947e0518 437 Pfam PF09298 Fumarylacetoacetase N-terminal 38 139 1.0E-31 T 23-04-2016 IPR015377 Fumarylacetoacetase, N-terminal GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 RPE_RS04600 746afbe4bf933d999b0eeaff947e0518 437 TIGRFAM TIGR01266 fum_ac_acetase: fumarylacetoacetase 25 436 8.1E-179 T 23-04-2016 IPR005959 Fumarylacetoacetase GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 RPE_RS04600 746afbe4bf933d999b0eeaff947e0518 437 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 145 433 1.1E-57 T 23-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RPE_RS23820 10ff835e6534edc683cd9cc4fcedcfcc 347 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 25 328 1.3E-136 T 23-04-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 RPE_RS23820 10ff835e6534edc683cd9cc4fcedcfcc 347 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 347 170.784 T 23-04-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 RPE_RS23820 10ff835e6534edc683cd9cc4fcedcfcc 347 PANTHER PTHR13779:SF25 1 335 8.6E-168 T 23-04-2016 RPE_RS23820 10ff835e6534edc683cd9cc4fcedcfcc 347 SUPERFAMILY SSF52540 22 252 1.09E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS23820 10ff835e6534edc683cd9cc4fcedcfcc 347 Gene3D G3DSA:3.40.50.300 22 180 4.2E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS23820 10ff835e6534edc683cd9cc4fcedcfcc 347 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 255 328 3.7E-31 T 23-04-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 RPE_RS23820 10ff835e6534edc683cd9cc4fcedcfcc 347 SMART SM00382 53 180 2.0E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS23820 10ff835e6534edc683cd9cc4fcedcfcc 347 Gene3D G3DSA:1.10.10.10 259 329 1.5E-31 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS23820 10ff835e6534edc683cd9cc4fcedcfcc 347 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 253 330 5.0E-39 T 23-04-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 RPE_RS23820 10ff835e6534edc683cd9cc4fcedcfcc 347 PANTHER PTHR13779 1 335 8.6E-168 T 23-04-2016 RPE_RS23820 10ff835e6534edc683cd9cc4fcedcfcc 347 Gene3D G3DSA:1.10.8.60 185 257 5.7E-29 T 23-04-2016 RPE_RS23820 10ff835e6534edc683cd9cc4fcedcfcc 347 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 11 235 2.1E-112 T 23-04-2016 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 RPE_RS23820 10ff835e6534edc683cd9cc4fcedcfcc 347 SUPERFAMILY SSF46785 259 332 9.07E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS15320 a09aa9867dd0556c8e9d1cd225967b15 322 PANTHER PTHR30482 2 320 3.8E-150 T 23-04-2016 RPE_RS15320 a09aa9867dd0556c8e9d1cd225967b15 322 Pfam PF02653 Branched-chain amino acid transport system / permease component 41 302 9.1E-34 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RPE_RS15320 a09aa9867dd0556c8e9d1cd225967b15 322 PANTHER PTHR30482:SF8 2 320 3.8E-150 T 23-04-2016 RPE_RS20410 a0435c636d72b4b3fd76b6b50b1de752 894 SUPERFAMILY SSF141868 635 880 9.42E-90 T 23-04-2016 IPR001633 EAL domain RPE_RS20410 a0435c636d72b4b3fd76b6b50b1de752 894 Gene3D G3DSA:3.30.450.20 196 321 4.0E-17 T 23-04-2016 RPE_RS20410 a0435c636d72b4b3fd76b6b50b1de752 894 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 457 617 2.3E-33 T 23-04-2016 IPR000160 GGDEF domain RPE_RS20410 a0435c636d72b4b3fd76b6b50b1de752 894 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 335 455 1.7E-7 T 23-04-2016 IPR000014 PAS domain RPE_RS20410 a0435c636d72b4b3fd76b6b50b1de752 894 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 207 330 9.5E-13 T 23-04-2016 IPR000014 PAS domain RPE_RS20410 a0435c636d72b4b3fd76b6b50b1de752 894 PANTHER PTHR10799 821 840 1.3E-88 T 23-04-2016 RPE_RS20410 a0435c636d72b4b3fd76b6b50b1de752 894 PANTHER PTHR10799 339 713 1.3E-88 T 23-04-2016 RPE_RS20410 a0435c636d72b4b3fd76b6b50b1de752 894 SUPERFAMILY SSF55785 195 321 2.09E-16 T 23-04-2016 IPR000014 PAS domain RPE_RS20410 a0435c636d72b4b3fd76b6b50b1de752 894 PANTHER PTHR10799:SF641 821 840 1.3E-88 T 23-04-2016 RPE_RS20410 a0435c636d72b4b3fd76b6b50b1de752 894 PANTHER PTHR10799:SF641 339 713 1.3E-88 T 23-04-2016 RPE_RS20410 a0435c636d72b4b3fd76b6b50b1de752 894 Pfam PF08448 PAS fold 342 451 1.5E-8 T 23-04-2016 IPR013656 PAS fold-4 RPE_RS20410 a0435c636d72b4b3fd76b6b50b1de752 894 Pfam PF08448 PAS fold 215 325 2.4E-14 T 23-04-2016 IPR013656 PAS fold-4 RPE_RS20410 a0435c636d72b4b3fd76b6b50b1de752 894 SMART SM00267 449 619 2.1E-50 T 23-04-2016 IPR000160 GGDEF domain RPE_RS20410 a0435c636d72b4b3fd76b6b50b1de752 894 Gene3D G3DSA:3.20.20.450 633 880 2.0E-96 T 23-04-2016 IPR001633 EAL domain RPE_RS20410 a0435c636d72b4b3fd76b6b50b1de752 894 SUPERFAMILY SSF55785 73 173 2.79E-8 T 23-04-2016 IPR000014 PAS domain RPE_RS20410 a0435c636d72b4b3fd76b6b50b1de752 894 SUPERFAMILY SSF55785 319 442 2.74E-16 T 23-04-2016 IPR000014 PAS domain RPE_RS20410 a0435c636d72b4b3fd76b6b50b1de752 894 Pfam PF00990 Diguanylate cyclase, GGDEF domain 460 613 3.5E-35 T 23-04-2016 IPR000160 GGDEF domain RPE_RS20410 a0435c636d72b4b3fd76b6b50b1de752 894 SUPERFAMILY SSF55073 465 621 7.61E-37 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS20410 a0435c636d72b4b3fd76b6b50b1de752 894 Gene3D G3DSA:3.30.70.270 461 627 4.6E-47 T 23-04-2016 RPE_RS20410 a0435c636d72b4b3fd76b6b50b1de752 894 SMART SM00052 629 875 2.8E-113 T 23-04-2016 IPR001633 EAL domain RPE_RS20410 a0435c636d72b4b3fd76b6b50b1de752 894 Pfam PF00563 EAL domain 635 870 1.2E-71 T 23-04-2016 IPR001633 EAL domain RPE_RS20410 a0435c636d72b4b3fd76b6b50b1de752 894 Pfam PF12860 PAS fold 94 198 1.3E-16 T 23-04-2016 RPE_RS20410 a0435c636d72b4b3fd76b6b50b1de752 894 SMART SM00091 208 275 2.8E-4 T 23-04-2016 IPR000014 PAS domain RPE_RS20410 a0435c636d72b4b3fd76b6b50b1de752 894 SMART SM00091 335 402 7.9E-4 T 23-04-2016 IPR000014 PAS domain RPE_RS20410 a0435c636d72b4b3fd76b6b50b1de752 894 SMART SM00091 88 156 2.9 T 23-04-2016 IPR000014 PAS domain RPE_RS20410 a0435c636d72b4b3fd76b6b50b1de752 894 Gene3D G3DSA:3.30.450.20 79 194 5.8E-9 T 23-04-2016 RPE_RS20410 a0435c636d72b4b3fd76b6b50b1de752 894 Gene3D G3DSA:3.30.450.20 327 449 6.4E-15 T 23-04-2016 RPE_RS19515 e1e5451e341350ceac577c195d8e8121 76 Pfam PF05532 CsbD-like 13 64 4.7E-18 T 23-04-2016 IPR008462 CsbD-like RPE_RS19515 e1e5451e341350ceac577c195d8e8121 76 SUPERFAMILY SSF69047 10 75 3.27E-25 T 23-04-2016 IPR008462 CsbD-like RPE_RS19515 e1e5451e341350ceac577c195d8e8121 76 PIRSF PIRSF039008 10 75 4.5E-31 T 23-04-2016 IPR026042 Stress response protein YjbJ RPE_RS19515 e1e5451e341350ceac577c195d8e8121 76 Gene3D G3DSA:1.10.1470.10 11 75 1.6E-29 T 23-04-2016 IPR008462 CsbD-like RPE_RS19515 e1e5451e341350ceac577c195d8e8121 76 PANTHER PTHR34977 11 71 2.6E-13 T 23-04-2016 RPE_RS14830 f72c95bad7b4d7cfb92f798d4f330e10 67 Gene3D G3DSA:1.10.260.40 1 61 8.7E-16 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS14830 f72c95bad7b4d7cfb92f798d4f330e10 67 SUPERFAMILY SSF47413 1 60 1.81E-12 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS14830 f72c95bad7b4d7cfb92f798d4f330e10 67 PANTHER PTHR36924 1 65 6.5E-17 T 23-04-2016 RPE_RS14830 f72c95bad7b4d7cfb92f798d4f330e10 67 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 1 51 1.3E-14 T 23-04-2016 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 RPE_RS14830 f72c95bad7b4d7cfb92f798d4f330e10 67 PANTHER PTHR36924:SF1 1 65 6.5E-17 T 23-04-2016 RPE_RS18245 f38956b9378e547b531632d8b5d3fe31 425 Gene3D G3DSA:1.20.1260.10 1 182 1.1E-66 T 23-04-2016 IPR012347 Ferritin-related RPE_RS18245 f38956b9378e547b531632d8b5d3fe31 425 Gene3D G3DSA:1.20.1260.10 253 411 2.2E-58 T 23-04-2016 IPR012347 Ferritin-related RPE_RS18245 f38956b9378e547b531632d8b5d3fe31 425 SUPERFAMILY SSF47240 252 407 1.79E-47 T 23-04-2016 IPR009078 Ferritin-like superfamily RPE_RS18245 f38956b9378e547b531632d8b5d3fe31 425 PANTHER PTHR30565:SF2 2 179 3.8E-159 T 23-04-2016 RPE_RS18245 f38956b9378e547b531632d8b5d3fe31 425 PANTHER PTHR30565:SF2 257 425 3.8E-159 T 23-04-2016 RPE_RS18245 f38956b9378e547b531632d8b5d3fe31 425 PANTHER PTHR30565 2 179 3.8E-159 T 23-04-2016 RPE_RS18245 f38956b9378e547b531632d8b5d3fe31 425 PANTHER PTHR30565 257 425 3.8E-159 T 23-04-2016 RPE_RS18245 f38956b9378e547b531632d8b5d3fe31 425 Pfam PF05067 Manganese containing catalase 1 256 2.0E-62 T 23-04-2016 IPR007760 Manganese catalase RPE_RS18245 f38956b9378e547b531632d8b5d3fe31 425 Pfam PF05974 Domain of unknown function (DUF892) 257 411 2.3E-50 T 23-04-2016 IPR010287 Domain of unknown function DUF892 RPE_RS18245 f38956b9378e547b531632d8b5d3fe31 425 SUPERFAMILY SSF47240 1 262 1.57E-80 T 23-04-2016 IPR009078 Ferritin-like superfamily RPE_RS23515 b32d9a25e676c8c0fa4acda05904a940 780 SUPERFAMILY SSF55073 344 503 1.57E-47 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS23515 b32d9a25e676c8c0fa4acda05904a940 780 SMART SM00052 511 753 4.0E-96 T 23-04-2016 IPR001633 EAL domain RPE_RS23515 b32d9a25e676c8c0fa4acda05904a940 780 Pfam PF00990 Diguanylate cyclase, GGDEF domain 339 496 1.4E-45 T 23-04-2016 IPR000160 GGDEF domain RPE_RS23515 b32d9a25e676c8c0fa4acda05904a940 780 Pfam PF00563 EAL domain 518 748 8.8E-68 T 23-04-2016 IPR001633 EAL domain RPE_RS23515 b32d9a25e676c8c0fa4acda05904a940 780 Pfam PF12860 PAS fold 219 332 6.1E-16 T 23-04-2016 RPE_RS23515 b32d9a25e676c8c0fa4acda05904a940 780 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 337 499 2.1E-39 T 23-04-2016 IPR000160 GGDEF domain RPE_RS23515 b32d9a25e676c8c0fa4acda05904a940 780 Gene3D G3DSA:3.30.70.270 341 509 2.4E-54 T 23-04-2016 RPE_RS23515 b32d9a25e676c8c0fa4acda05904a940 780 SUPERFAMILY SSF141868 518 759 6.15E-81 T 23-04-2016 IPR001633 EAL domain RPE_RS23515 b32d9a25e676c8c0fa4acda05904a940 780 Gene3D G3DSA:3.20.20.450 515 758 4.3E-90 T 23-04-2016 IPR001633 EAL domain RPE_RS23515 b32d9a25e676c8c0fa4acda05904a940 780 PANTHER PTHR10799 374 611 1.7E-90 T 23-04-2016 RPE_RS23515 b32d9a25e676c8c0fa4acda05904a940 780 PANTHER PTHR10799 235 344 1.7E-90 T 23-04-2016 RPE_RS23515 b32d9a25e676c8c0fa4acda05904a940 780 PANTHER PTHR10799:SF657 374 611 1.7E-90 T 23-04-2016 RPE_RS23515 b32d9a25e676c8c0fa4acda05904a940 780 PANTHER PTHR10799:SF657 235 344 1.7E-90 T 23-04-2016 RPE_RS23515 b32d9a25e676c8c0fa4acda05904a940 780 Gene3D G3DSA:3.30.450.20 213 328 1.9E-7 T 23-04-2016 RPE_RS23515 b32d9a25e676c8c0fa4acda05904a940 780 SMART SM00267 328 501 4.3E-61 T 23-04-2016 IPR000160 GGDEF domain RPE_RS02560 7dc8518e0f1dc782581ea8a314c8c2d1 328 SUPERFAMILY SSF160240 242 313 4.97E-10 T 23-04-2016 RPE_RS02560 7dc8518e0f1dc782581ea8a314c8c2d1 328 PANTHER PTHR11562:SF17 1 322 3.2E-96 T 23-04-2016 RPE_RS02560 7dc8518e0f1dc782581ea8a314c8c2d1 328 PANTHER PTHR11562 1 322 3.2E-96 T 23-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RPE_RS02560 7dc8518e0f1dc782581ea8a314c8c2d1 328 Pfam PF01545 Cation efflux family 47 233 1.6E-39 T 23-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RPE_RS02560 7dc8518e0f1dc782581ea8a314c8c2d1 328 SUPERFAMILY SSF161111 44 235 7.19E-48 T 23-04-2016 RPE_RS02560 7dc8518e0f1dc782581ea8a314c8c2d1 328 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 44 315 4.7E-74 T 23-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RPE_RS02560 7dc8518e0f1dc782581ea8a314c8c2d1 328 Gene3D G3DSA:1.20.1510.10 45 233 2.9E-50 T 23-04-2016 IPR027469 Cation efflux protein transmembrane domain RPE_RS02560 7dc8518e0f1dc782581ea8a314c8c2d1 328 Gene3D G3DSA:3.30.70.1350 247 313 8.3E-4 T 23-04-2016 IPR027470 Cation efflux protein, cytoplasmic domain RPE_RS22695 00481f5c93af6fe0133b7bbf56d54a0a 264 PANTHER PTHR24322 175 207 2.8E-73 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22695 00481f5c93af6fe0133b7bbf56d54a0a 264 PANTHER PTHR24322 27 158 2.8E-73 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22695 00481f5c93af6fe0133b7bbf56d54a0a 264 SUPERFAMILY SSF51735 22 264 1.21E-66 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS22695 00481f5c93af6fe0133b7bbf56d54a0a 264 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 29 263 1.3E-50 T 23-04-2016 RPE_RS22695 00481f5c93af6fe0133b7bbf56d54a0a 264 PANTHER PTHR24322:SF264 175 207 2.8E-73 T 23-04-2016 RPE_RS22695 00481f5c93af6fe0133b7bbf56d54a0a 264 PANTHER PTHR24322:SF264 27 158 2.8E-73 T 23-04-2016 RPE_RS22695 00481f5c93af6fe0133b7bbf56d54a0a 264 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 162 190 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RPE_RS22695 00481f5c93af6fe0133b7bbf56d54a0a 264 Gene3D G3DSA:3.40.50.720 21 263 4.0E-62 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS22695 00481f5c93af6fe0133b7bbf56d54a0a 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 162 3.4E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22695 00481f5c93af6fe0133b7bbf56d54a0a 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 175 194 3.4E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22695 00481f5c93af6fe0133b7bbf56d54a0a 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 96 107 3.4E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22695 00481f5c93af6fe0133b7bbf56d54a0a 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 96 107 1.0E-37 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22695 00481f5c93af6fe0133b7bbf56d54a0a 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 24 41 1.0E-37 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22695 00481f5c93af6fe0133b7bbf56d54a0a 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 164 1.0E-37 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22695 00481f5c93af6fe0133b7bbf56d54a0a 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 196 213 1.0E-37 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22695 00481f5c93af6fe0133b7bbf56d54a0a 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 194 1.0E-37 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22695 00481f5c93af6fe0133b7bbf56d54a0a 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 226 246 1.0E-37 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS09455 79b9a7abe3a03f982d20319047192e86 187 PIRSF PIRSF010244 1 182 4.8E-29 T 23-04-2016 IPR014456 Uncharacterised conserved protein UCP010244, integral membrane protein RPE_RS15745 23c644eab994c3523f5340c5fe960ada 312 Gene3D G3DSA:3.40.190.10 37 175 2.7E-8 T 23-04-2016 RPE_RS15745 23c644eab994c3523f5340c5fe960ada 312 TIGRFAM TIGR03870 ABC_MoxJ: methanol oxidation system protein MoxJ 57 300 1.3E-112 T 23-04-2016 IPR022455 Methanol oxidation system protein MoxJ GO:0042597|GO:0046170 RPE_RS15745 23c644eab994c3523f5340c5fe960ada 312 SMART SM00062 56 295 1.1E-32 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RPE_RS15745 23c644eab994c3523f5340c5fe960ada 312 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 57 288 1.7E-16 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RPE_RS15745 23c644eab994c3523f5340c5fe960ada 312 SUPERFAMILY SSF53850 53 287 9.95E-22 T 23-04-2016 RPE_RS08860 63ec5a06f333acfada5ccdbe403b54e7 264 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 25 218 1.9E-40 T 23-04-2016 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 RPE_RS08860 63ec5a06f333acfada5ccdbe403b54e7 264 PANTHER PTHR23293 169 264 3.9E-58 T 23-04-2016 RPE_RS08860 63ec5a06f333acfada5ccdbe403b54e7 264 PANTHER PTHR23293 2 149 3.9E-58 T 23-04-2016 RPE_RS08860 63ec5a06f333acfada5ccdbe403b54e7 264 SUPERFAMILY SSF52402 2 200 1.75E-58 T 23-04-2016 RPE_RS08860 63ec5a06f333acfada5ccdbe403b54e7 264 Gene3D G3DSA:3.40.50.620 3 214 1.6E-53 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS15805 4ebaa0bfdda65c1b792ec387d797305d 224 PANTHER PTHR15020 1 211 5.8E-35 T 23-04-2016 RPE_RS15805 4ebaa0bfdda65c1b792ec387d797305d 224 Gene3D G3DSA:3.40.50.720 1 200 1.2E-37 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS15805 4ebaa0bfdda65c1b792ec387d797305d 224 SUPERFAMILY SSF51735 1 200 2.04E-33 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS15805 4ebaa0bfdda65c1b792ec387d797305d 224 Pfam PF13460 NAD(P)H-binding 7 192 3.8E-36 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS04290 2887a83d5e53e92b5d7b64046e3612b6 149 SUPERFAMILY SSF46626 37 130 1.44E-12 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS04290 2887a83d5e53e92b5d7b64046e3612b6 149 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 38 103 6.1E-6 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS04290 2887a83d5e53e92b5d7b64046e3612b6 149 Gene3D G3DSA:1.10.760.10 38 146 6.0E-11 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS04290 2887a83d5e53e92b5d7b64046e3612b6 149 TIGRFAM TIGR03874 4cys_cytochr: c-type cytochrome, methanol metabolism-related 4 145 8.6E-81 T 23-04-2016 IPR022411 C-type cytochrome, methanol metabolism-related RPE_RS04935 0fd5ad6f7a23a5e1a152588124691267 433 Gene3D G3DSA:3.40.50.980 84 240 3.3E-12 T 23-04-2016 RPE_RS04935 0fd5ad6f7a23a5e1a152588124691267 433 PANTHER PTHR24095 55 376 1.4E-145 T 23-04-2016 RPE_RS04935 0fd5ad6f7a23a5e1a152588124691267 433 PANTHER PTHR24095:SF175 55 376 1.4E-145 T 23-04-2016 RPE_RS04935 0fd5ad6f7a23a5e1a152588124691267 433 SUPERFAMILY SSF56801 20 392 1.18E-65 T 23-04-2016 RPE_RS04935 0fd5ad6f7a23a5e1a152588124691267 433 Pfam PF14535 AMP-binding enzyme C-terminal domain 334 429 7.6E-27 T 23-04-2016 IPR028154 AMP-dependent ligase, C-terminal RPE_RS04935 0fd5ad6f7a23a5e1a152588124691267 433 Gene3D G3DSA:3.30.300.30 324 429 2.0E-36 T 23-04-2016 RPE_RS04935 0fd5ad6f7a23a5e1a152588124691267 433 Pfam PF00501 AMP-binding enzyme 78 285 9.3E-14 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS04935 0fd5ad6f7a23a5e1a152588124691267 433 PIRSF PIRSF006444 1 431 4.7E-202 T 23-04-2016 IPR011880 Phenylacetate-CoA ligase GO:0010124|GO:0047475 KEGG: 00360+6.2.1.30|MetaCyc: PWY-1341|MetaCyc: PWY-6318|MetaCyc: PWY-7716|UniPathway: UPA00930 RPE_RS06680 5d8373af2e99df59608fadd0cb60cdbb 374 Gene3D G3DSA:1.10.10.10 37 120 3.9E-15 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS06680 5d8373af2e99df59608fadd0cb60cdbb 374 PANTHER PTHR11746:SF63 41 358 1.2E-35 T 23-04-2016 RPE_RS06680 5d8373af2e99df59608fadd0cb60cdbb 374 SUPERFAMILY SSF53335 125 360 9.34E-37 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS06680 5d8373af2e99df59608fadd0cb60cdbb 374 SUPERFAMILY SSF46785 40 118 4.31E-12 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS06680 5d8373af2e99df59608fadd0cb60cdbb 374 Pfam PF00891 O-methyltransferase 126 353 6.0E-42 T 23-04-2016 IPR001077 O-methyltransferase, family 2 GO:0008171 RPE_RS06680 5d8373af2e99df59608fadd0cb60cdbb 374 Pfam PF16864 Dimerisation domain 42 105 1.6E-9 T 23-04-2016 IPR031725 Acetylserotonin O-methyltransferase, dimerisation domain RPE_RS06680 5d8373af2e99df59608fadd0cb60cdbb 374 PANTHER PTHR11746 41 358 1.2E-35 T 23-04-2016 RPE_RS06680 5d8373af2e99df59608fadd0cb60cdbb 374 Gene3D G3DSA:3.40.50.150 155 366 4.8E-41 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS23930 2d8ced1f2c0a1cb960cb04e053a18802 228 PANTHER PTHR34001 1 228 2.6E-67 T 23-04-2016 RPE_RS23930 2d8ced1f2c0a1cb960cb04e053a18802 228 SUPERFAMILY SSF56925 40 221 1.88E-34 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RPE_RS23930 2d8ced1f2c0a1cb960cb04e053a18802 228 Gene3D G3DSA:2.40.160.20 40 219 6.8E-40 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RPE_RS23930 2d8ced1f2c0a1cb960cb04e053a18802 228 Pfam PF13505 Outer membrane protein beta-barrel domain 8 218 9.1E-18 T 23-04-2016 IPR027385 Outer membrane protein beta-barrel RPE_RS18180 648801b7aa810b3c36dfd14791bf1db6 755 Gene3D G3DSA:1.20.120.160 1 139 2.8E-28 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS18180 648801b7aa810b3c36dfd14791bf1db6 755 PANTHER PTHR22617 1 148 2.5E-151 T 23-04-2016 RPE_RS18180 648801b7aa810b3c36dfd14791bf1db6 755 PANTHER PTHR22617 203 754 2.5E-151 T 23-04-2016 RPE_RS18180 648801b7aa810b3c36dfd14791bf1db6 755 PRINTS PR00344 Bacterial sensor protein C-terminal signature 582 600 1.1E-9 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS18180 648801b7aa810b3c36dfd14791bf1db6 755 PRINTS PR00344 Bacterial sensor protein C-terminal signature 606 619 1.1E-9 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS18180 648801b7aa810b3c36dfd14791bf1db6 755 PRINTS PR00344 Bacterial sensor protein C-terminal signature 524 538 1.1E-9 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS18180 648801b7aa810b3c36dfd14791bf1db6 755 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 367 433 3.3E-12 T 23-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RPE_RS18180 648801b7aa810b3c36dfd14791bf1db6 755 Pfam PF01627 Hpt domain 4 97 2.9E-12 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS18180 648801b7aa810b3c36dfd14791bf1db6 755 SMART SM00387 479 622 6.0E-18 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS18180 648801b7aa810b3c36dfd14791bf1db6 755 SMART SM00260 614 754 5.4E-17 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS18180 648801b7aa810b3c36dfd14791bf1db6 755 SMART SM01231 366 434 1.6E-11 T 23-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RPE_RS18180 648801b7aa810b3c36dfd14791bf1db6 755 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 483 620 2.2E-14 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS18180 648801b7aa810b3c36dfd14791bf1db6 755 Gene3D G3DSA:1.10.287.560 367 434 1.3E-11 T 23-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RPE_RS18180 648801b7aa810b3c36dfd14791bf1db6 755 Gene3D G3DSA:3.30.565.10 435 620 6.3E-32 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS18180 648801b7aa810b3c36dfd14791bf1db6 755 Gene3D G3DSA:2.40.50.180 647 705 2.7E-6 T 23-04-2016 RPE_RS18180 648801b7aa810b3c36dfd14791bf1db6 755 SUPERFAMILY SSF47226 3 128 4.19E-24 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS18180 648801b7aa810b3c36dfd14791bf1db6 755 SUPERFAMILY SSF47384 367 435 2.04E-7 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS18180 648801b7aa810b3c36dfd14791bf1db6 755 SUPERFAMILY SSF55874 436 619 1.33E-36 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS18180 648801b7aa810b3c36dfd14791bf1db6 755 SMART SM00073 1 98 6.9E-13 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS18180 648801b7aa810b3c36dfd14791bf1db6 755 SUPERFAMILY SSF50341 621 753 2.09E-25 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS18180 648801b7aa810b3c36dfd14791bf1db6 755 PANTHER PTHR22617:SF6 1 148 2.5E-151 T 23-04-2016 RPE_RS18180 648801b7aa810b3c36dfd14791bf1db6 755 PANTHER PTHR22617:SF6 203 754 2.5E-151 T 23-04-2016 RPE_RS18180 648801b7aa810b3c36dfd14791bf1db6 755 Gene3D G3DSA:2.30.30.40 709 752 5.0E-13 T 23-04-2016 RPE_RS18180 648801b7aa810b3c36dfd14791bf1db6 755 Gene3D G3DSA:2.30.30.40 622 643 5.0E-13 T 23-04-2016 RPE_RS18180 648801b7aa810b3c36dfd14791bf1db6 755 Pfam PF01584 CheW-like domain 627 753 1.1E-18 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS10170 f25897fa1e0c61521b5f368fbc04bf59 310 PANTHER PTHR10907 101 307 5.8E-60 T 23-04-2016 RPE_RS10170 f25897fa1e0c61521b5f368fbc04bf59 310 PANTHER PTHR10907 1 76 5.8E-60 T 23-04-2016 RPE_RS10170 f25897fa1e0c61521b5f368fbc04bf59 310 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 13 287 4.4E-63 T 23-04-2016 IPR013658 SMP-30/Gluconolactonase/LRE-like region RPE_RS10170 f25897fa1e0c61521b5f368fbc04bf59 310 SUPERFAMILY SSF63829 4 305 1.11E-54 T 23-04-2016 RPE_RS10170 f25897fa1e0c61521b5f368fbc04bf59 310 PANTHER PTHR10907:SF47 101 307 5.8E-60 T 23-04-2016 RPE_RS10170 f25897fa1e0c61521b5f368fbc04bf59 310 PANTHER PTHR10907:SF47 1 76 5.8E-60 T 23-04-2016 RPE_RS10170 f25897fa1e0c61521b5f368fbc04bf59 310 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 228 245 2.2E-6 T 23-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) RPE_RS10170 f25897fa1e0c61521b5f368fbc04bf59 310 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 270 288 2.2E-6 T 23-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) RPE_RS10170 f25897fa1e0c61521b5f368fbc04bf59 310 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 181 201 2.2E-6 T 23-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) RPE_RS10170 f25897fa1e0c61521b5f368fbc04bf59 310 Gene3D G3DSA:2.120.10.30 3 307 9.0E-61 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like RPE_RS09310 4fef3dc9af9c7a91a34278a8939cba28 105 Gene3D G3DSA:3.30.460.10 11 102 5.9E-19 T 23-04-2016 RPE_RS09310 4fef3dc9af9c7a91a34278a8939cba28 105 PANTHER PTHR33571 10 105 7.9E-19 T 23-04-2016 RPE_RS09310 4fef3dc9af9c7a91a34278a8939cba28 105 SUPERFAMILY SSF81301 5 100 3.27E-16 T 23-04-2016 RPE_RS09310 4fef3dc9af9c7a91a34278a8939cba28 105 PANTHER PTHR33571:SF3 10 105 7.9E-19 T 23-04-2016 RPE_RS09310 4fef3dc9af9c7a91a34278a8939cba28 105 Pfam PF01909 Nucleotidyltransferase domain 11 61 6.0E-10 T 23-04-2016 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 RPE_RS22245 5e2de44725e1189e00647a562c83e793 636 Gene3D G3DSA:2.30.38.10 427 504 1.4E-11 T 23-04-2016 RPE_RS22245 5e2de44725e1189e00647a562c83e793 636 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 9 63 9.1E-21 T 23-04-2016 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118 RPE_RS22245 5e2de44725e1189e00647a562c83e793 636 Pfam PF00501 AMP-binding enzyme 70 510 1.1E-83 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS22245 5e2de44725e1189e00647a562c83e793 636 Gene3D G3DSA:3.40.50.980 59 250 1.8E-38 T 23-04-2016 RPE_RS22245 5e2de44725e1189e00647a562c83e793 636 ProSitePatterns PS00455 Putative AMP-binding domain signature. 246 257 - T 23-04-2016 IPR020845 AMP-binding, conserved site RPE_RS22245 5e2de44725e1189e00647a562c83e793 636 Pfam PF13193 AMP-binding enzyme C-terminal domain 520 598 1.1E-22 T 23-04-2016 IPR025110 AMP-binding enzyme C-terminal domain RPE_RS22245 5e2de44725e1189e00647a562c83e793 636 PANTHER PTHR24095:SF199 7 633 0.0 T 23-04-2016 RPE_RS22245 5e2de44725e1189e00647a562c83e793 636 SUPERFAMILY SSF56801 5 628 1.57E-158 T 23-04-2016 RPE_RS22245 5e2de44725e1189e00647a562c83e793 636 Gene3D G3DSA:3.40.50.980 251 412 2.6E-29 T 23-04-2016 RPE_RS22245 5e2de44725e1189e00647a562c83e793 636 PANTHER PTHR24095 7 633 0.0 T 23-04-2016 RPE_RS22245 5e2de44725e1189e00647a562c83e793 636 Gene3D G3DSA:3.30.300.30 507 610 5.7E-22 T 23-04-2016 RPE_RS17715 aeab905da30dc5347665e6e355e1276b 407 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 63 349 2.5E-17 T 23-04-2016 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 RPE_RS17715 aeab905da30dc5347665e6e355e1276b 407 Gene3D G3DSA:3.20.20.190 61 397 1.2E-57 T 23-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 RPE_RS17715 aeab905da30dc5347665e6e355e1276b 407 PANTHER PTHR23344:SF7 59 404 9.0E-70 T 23-04-2016 RPE_RS17715 aeab905da30dc5347665e6e355e1276b 407 PANTHER PTHR23344 59 404 9.0E-70 T 23-04-2016 IPR004129 Glycerophosphoryl diester phosphodiesterase GO:0008889 RPE_RS17715 aeab905da30dc5347665e6e355e1276b 407 SUPERFAMILY SSF51695 61 398 5.49E-62 T 23-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 RPE_RS03050 48245412aa26cddc35d3a235f590e1aa 255 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 190 4.9E-5 T 23-04-2016 RPE_RS03050 48245412aa26cddc35d3a235f590e1aa 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 252 2.5E-66 T 23-04-2016 RPE_RS03050 48245412aa26cddc35d3a235f590e1aa 255 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RPE_RS03050 48245412aa26cddc35d3a235f590e1aa 255 TIGRFAM TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase 4 253 2.4E-146 T 23-04-2016 IPR017619 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase RPE_RS03050 48245412aa26cddc35d3a235f590e1aa 255 SUPERFAMILY SSF51735 5 253 6.6E-87 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS03050 48245412aa26cddc35d3a235f590e1aa 255 Gene3D G3DSA:3.40.50.720 1 253 1.3E-89 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS03050 48245412aa26cddc35d3a235f590e1aa 255 PANTHER PTHR24321 2 253 1.1E-44 T 23-04-2016 RPE_RS03050 48245412aa26cddc35d3a235f590e1aa 255 PANTHER PTHR24321:SF6 2 253 1.1E-44 T 23-04-2016 RPE_RS03050 48245412aa26cddc35d3a235f590e1aa 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 7.1E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS03050 48245412aa26cddc35d3a235f590e1aa 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 7.1E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS03050 48245412aa26cddc35d3a235f590e1aa 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 7.1E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS03050 48245412aa26cddc35d3a235f590e1aa 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 2.5E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS03050 48245412aa26cddc35d3a235f590e1aa 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.5E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS03050 48245412aa26cddc35d3a235f590e1aa 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 2.5E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS03050 48245412aa26cddc35d3a235f590e1aa 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 2.5E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS03050 48245412aa26cddc35d3a235f590e1aa 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 2.5E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS03050 48245412aa26cddc35d3a235f590e1aa 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.5E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS02235 0a40bc16ecc78fcd08f9db9c06218267 223 ProDom PD032436 LIPOPROTEIN UNCHARACTERIZED PROBABLE CJ0457C SIMILAR TRANSFERASE BACTERIA PRECURSOR SIGNAL CC0304 47 131 1.0E-42 T 23-04-2016 IPR007172 Domain of unknown function DUF374 RPE_RS02235 0a40bc16ecc78fcd08f9db9c06218267 223 Pfam PF04028 Domain of unknown function (DUF374) 67 131 3.5E-24 T 23-04-2016 IPR007172 Domain of unknown function DUF374 RPE_RS14425 a0f38a786dfaf721215200b6ea61c890 335 PIRSF PIRSF006278 1 335 8.6E-105 T 23-04-2016 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase RPE_RS14425 a0f38a786dfaf721215200b6ea61c890 335 PANTHER PTHR10314:SF105 4 323 9.1E-94 T 23-04-2016 RPE_RS14425 a0f38a786dfaf721215200b6ea61c890 335 Gene3D G3DSA:3.40.50.1100 112 334 1.9E-66 T 23-04-2016 RPE_RS14425 a0f38a786dfaf721215200b6ea61c890 335 TIGRFAM TIGR01275 ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family 12 333 2.7E-92 T 23-04-2016 IPR005966 D-cysteine desulfhydrase GO:0003824 KEGG: 00270+4.4.1.15 RPE_RS14425 a0f38a786dfaf721215200b6ea61c890 335 SUPERFAMILY SSF53686 8 332 1.7E-83 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RPE_RS14425 a0f38a786dfaf721215200b6ea61c890 335 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 13 322 3.4E-56 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RPE_RS14425 a0f38a786dfaf721215200b6ea61c890 335 PANTHER PTHR10314 4 323 9.1E-94 T 23-04-2016 RPE_RS16895 d4bed7d2e8fb6ba053a05039d4a17dbe 256 PIRSF PIRSF026671 7 254 8.0E-68 T 23-04-2016 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 RPE_RS16895 d4bed7d2e8fb6ba053a05039d4a17dbe 256 Pfam PF01427 D-ala-D-ala dipeptidase 186 242 7.1E-12 T 23-04-2016 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 RPE_RS16895 d4bed7d2e8fb6ba053a05039d4a17dbe 256 Pfam PF01427 D-ala-D-ala dipeptidase 31 155 1.6E-13 T 23-04-2016 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 RPE_RS16895 d4bed7d2e8fb6ba053a05039d4a17dbe 256 PANTHER PTHR22935:SF67 66 250 2.2E-82 T 23-04-2016 RPE_RS16895 d4bed7d2e8fb6ba053a05039d4a17dbe 256 Gene3D G3DSA:3.30.1380.10 31 239 4.1E-60 T 23-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain RPE_RS16895 d4bed7d2e8fb6ba053a05039d4a17dbe 256 PANTHER PTHR22935 66 250 2.2E-82 T 23-04-2016 RPE_RS16895 d4bed7d2e8fb6ba053a05039d4a17dbe 256 SUPERFAMILY SSF55166 29 241 2.51E-53 T 23-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain RPE_RS16895 d4bed7d2e8fb6ba053a05039d4a17dbe 256 Hamap MF_01924 D-alanyl-D-alanine dipeptidase [ddpX]. 31 251 27.769 T 23-04-2016 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 RPE_RS02770 4888a812e7e950348675bf56d154b0e4 300 Gene3D G3DSA:1.20.1080.10 27 268 2.0E-70 T 23-04-2016 IPR023271 Aquaporin-like RPE_RS02770 4888a812e7e950348675bf56d154b0e4 300 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 79 88 - T 23-04-2016 IPR024002 Formate/nitrite transporter, conserved site RPE_RS02770 4888a812e7e950348675bf56d154b0e4 300 Pfam PF01226 Formate/nitrite transporter 12 263 1.0E-68 T 23-04-2016 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 RPE_RS02770 4888a812e7e950348675bf56d154b0e4 300 PANTHER PTHR30520:SF0 4 266 2.1E-75 T 23-04-2016 RPE_RS02770 4888a812e7e950348675bf56d154b0e4 300 PANTHER PTHR30520 4 266 2.1E-75 T 23-04-2016 RPE_RS17790 65e460dcb7f8f91ee6a82506fa3b1db6 202 SUPERFAMILY SSF54975 1 136 6.21E-37 T 23-04-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 RPE_RS17790 65e460dcb7f8f91ee6a82506fa3b1db6 202 SMART SM01034 1 93 4.7E-40 T 23-04-2016 IPR007024 BLUF domain GO:0009882|GO:0071949 RPE_RS17790 65e460dcb7f8f91ee6a82506fa3b1db6 202 Pfam PF04940 Sensors of blue-light using FAD 1 92 9.0E-30 T 23-04-2016 IPR007024 BLUF domain GO:0009882|GO:0071949 RPE_RS11585 3c6b01c0824d7f0b37ed093a2f7e4ae9 397 SUPERFAMILY SSF54373 182 283 4.51E-26 T 23-04-2016 RPE_RS11585 3c6b01c0824d7f0b37ed093a2f7e4ae9 397 PANTHER PTHR13789 7 394 4.2E-131 T 23-04-2016 RPE_RS11585 3c6b01c0824d7f0b37ed093a2f7e4ae9 397 Pfam PF01494 FAD binding domain 6 353 2.2E-30 T 23-04-2016 IPR002938 FAD-binding domain GO:0071949 RPE_RS11585 3c6b01c0824d7f0b37ed093a2f7e4ae9 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 3.4E-18 T 23-04-2016 RPE_RS11585 3c6b01c0824d7f0b37ed093a2f7e4ae9 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 304 320 3.4E-18 T 23-04-2016 RPE_RS11585 3c6b01c0824d7f0b37ed093a2f7e4ae9 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 289 304 3.4E-18 T 23-04-2016 RPE_RS11585 3c6b01c0824d7f0b37ed093a2f7e4ae9 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 340 356 3.4E-18 T 23-04-2016 RPE_RS11585 3c6b01c0824d7f0b37ed093a2f7e4ae9 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 157 172 3.4E-18 T 23-04-2016 RPE_RS11585 3c6b01c0824d7f0b37ed093a2f7e4ae9 397 SUPERFAMILY SSF51905 6 178 1.51E-59 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS11585 3c6b01c0824d7f0b37ed093a2f7e4ae9 397 SUPERFAMILY SSF51905 276 380 1.51E-59 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS11585 3c6b01c0824d7f0b37ed093a2f7e4ae9 397 Gene3D G3DSA:3.50.50.60 5 183 2.4E-44 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS11585 3c6b01c0824d7f0b37ed093a2f7e4ae9 397 Gene3D G3DSA:3.50.50.60 277 362 2.4E-44 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS11585 3c6b01c0824d7f0b37ed093a2f7e4ae9 397 PANTHER PTHR13789:SF212 7 394 4.2E-131 T 23-04-2016 RPE_RS20490 347e19305b8e43573bf92bb5fa79d961 127 PANTHER PTHR39426 1 125 6.5E-22 T 23-04-2016 RPE_RS20490 347e19305b8e43573bf92bb5fa79d961 127 TIGRFAM TIGR01550 DOC_P1: death-on-curing family protein 12 122 1.9E-20 T 23-04-2016 IPR006440 Death on curing protein GO:0016301 RPE_RS20490 347e19305b8e43573bf92bb5fa79d961 127 SUPERFAMILY SSF140931 25 114 1.7E-9 T 23-04-2016 IPR003812 Fido domain RPE_RS20490 347e19305b8e43573bf92bb5fa79d961 127 Pfam PF02661 Fic/DOC family 6 86 8.4E-14 T 23-04-2016 IPR003812 Fido domain RPE_RS20490 347e19305b8e43573bf92bb5fa79d961 127 PANTHER PTHR39426:SF1 1 125 6.5E-22 T 23-04-2016 RPE_RS20490 347e19305b8e43573bf92bb5fa79d961 127 Gene3D G3DSA:1.10.3290.10 47 89 3.2E-6 T 23-04-2016 IPR003812 Fido domain RPE_RS20490 347e19305b8e43573bf92bb5fa79d961 127 PIRSF PIRSF018297 3 126 2.1E-41 T 23-04-2016 IPR006440 Death on curing protein GO:0016301 RPE_RS04050 8a775f6e3a7c2bb16937aa321932c7f9 387 Pfam PF00534 Glycosyl transferases group 1 203 350 2.1E-22 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 RPE_RS04050 8a775f6e3a7c2bb16937aa321932c7f9 387 Pfam PF13439 Glycosyltransferase Family 4 14 190 2.2E-12 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RPE_RS04050 8a775f6e3a7c2bb16937aa321932c7f9 387 PANTHER PTHR12526:SF380 1 132 1.0E-45 T 23-04-2016 RPE_RS04050 8a775f6e3a7c2bb16937aa321932c7f9 387 PANTHER PTHR12526:SF380 150 327 1.0E-45 T 23-04-2016 RPE_RS04050 8a775f6e3a7c2bb16937aa321932c7f9 387 SUPERFAMILY SSF53756 1 362 8.48E-59 T 23-04-2016 RPE_RS04050 8a775f6e3a7c2bb16937aa321932c7f9 387 PANTHER PTHR12526 1 132 1.0E-45 T 23-04-2016 RPE_RS04050 8a775f6e3a7c2bb16937aa321932c7f9 387 PANTHER PTHR12526 150 327 1.0E-45 T 23-04-2016 RPE_RS04050 8a775f6e3a7c2bb16937aa321932c7f9 387 Gene3D G3DSA:3.40.50.2000 198 339 1.4E-17 T 23-04-2016 RPE_RS04725 7e43dca97337099eb198d2252300cc9e 954 SUPERFAMILY SSF52317 368 520 2.29E-8 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RPE_RS04725 7e43dca97337099eb198d2252300cc9e 954 TIGRFAM TIGR02226 two_anch: N-terminal double-transmembrane domain 6 84 4.6E-23 T 23-04-2016 IPR011933 Double transmembrane domain RPE_RS04725 7e43dca97337099eb198d2252300cc9e 954 Pfam PF13709 Domain of unknown function (DUF4159) 712 934 2.9E-53 T 23-04-2016 IPR025297 Domain of unknown function DUF4159 RPE_RS04725 7e43dca97337099eb198d2252300cc9e 954 Pfam PF07584 Aerotolerance regulator N-terminal 6 80 2.5E-19 T 23-04-2016 IPR024163 Aerotolerance regulator, N-terminal RPE_RS11420 d3d0202fe91e914d16b9cc79805d7795 154 Pfam PF01047 MarR family 43 101 5.8E-18 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RPE_RS11420 d3d0202fe91e914d16b9cc79805d7795 154 SMART SM00347 36 136 1.4E-23 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RPE_RS11420 d3d0202fe91e914d16b9cc79805d7795 154 SUPERFAMILY SSF46785 8 148 7.1E-34 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS11420 d3d0202fe91e914d16b9cc79805d7795 154 PANTHER PTHR33164:SF5 16 154 2.6E-49 T 23-04-2016 RPE_RS11420 d3d0202fe91e914d16b9cc79805d7795 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 60 76 1.3E-6 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RPE_RS11420 d3d0202fe91e914d16b9cc79805d7795 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 96 112 1.3E-6 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RPE_RS11420 d3d0202fe91e914d16b9cc79805d7795 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 77 92 1.3E-6 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RPE_RS11420 d3d0202fe91e914d16b9cc79805d7795 154 PANTHER PTHR33164 16 154 2.6E-49 T 23-04-2016 RPE_RS11420 d3d0202fe91e914d16b9cc79805d7795 154 Gene3D G3DSA:1.10.10.10 14 151 2.8E-40 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS07585 713c892950f243fdd1efba4d913787f0 337 PANTHER PTHR10366:SF119 7 333 4.0E-120 T 23-04-2016 RPE_RS07585 713c892950f243fdd1efba4d913787f0 337 PANTHER PTHR10366 7 333 4.0E-120 T 23-04-2016 RPE_RS07585 713c892950f243fdd1efba4d913787f0 337 Pfam PF01370 NAD dependent epimerase/dehydratase family 8 241 1.3E-33 T 23-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 RPE_RS07585 713c892950f243fdd1efba4d913787f0 337 Gene3D G3DSA:3.90.25.10 203 308 1.7E-18 T 23-04-2016 RPE_RS07585 713c892950f243fdd1efba4d913787f0 337 Gene3D G3DSA:3.40.50.720 8 202 3.0E-40 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS07585 713c892950f243fdd1efba4d913787f0 337 SUPERFAMILY SSF51735 8 313 2.92E-63 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS12765 d18ea5007ab015b59f501e4cccf7358c 426 PANTHER PTHR30489 24 426 1.9E-79 T 23-04-2016 RPE_RS12765 d18ea5007ab015b59f501e4cccf7358c 426 Pfam PF12704 MacB-like periplasmic core domain 42 254 8.1E-17 T 23-04-2016 IPR025857 MacB-like periplasmic core domain RPE_RS12765 d18ea5007ab015b59f501e4cccf7358c 426 Pfam PF02687 FtsX-like permease family 286 419 4.3E-15 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 RPE_RS12765 d18ea5007ab015b59f501e4cccf7358c 426 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 17 426 4.4E-152 T 23-04-2016 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 RPE_RS12765 d18ea5007ab015b59f501e4cccf7358c 426 PANTHER PTHR30489:SF8 24 426 1.9E-79 T 23-04-2016 RPE_RS10120 66eff32217e215728ae8b4b1f5eb7362 310 PANTHER PTHR30606:SF2 10 310 1.5E-75 T 23-04-2016 RPE_RS10120 66eff32217e215728ae8b4b1f5eb7362 310 PANTHER PTHR30606 10 310 1.5E-75 T 23-04-2016 RPE_RS10120 66eff32217e215728ae8b4b1f5eb7362 310 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 26 310 7.8E-37 T 23-04-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 RPE_RS18665 ff6dca86ded4e370771bd560a422e055 249 Gene3D G3DSA:2.60.260.20 12 71 1.2E-13 T 23-04-2016 RPE_RS18665 ff6dca86ded4e370771bd560a422e055 249 Pfam PF02814 UreE urease accessory protein, N-terminal domain 8 67 2.2E-18 T 23-04-2016 IPR004029 UreE urease accessory, N-terminal RPE_RS18665 ff6dca86ded4e370771bd560a422e055 249 Hamap MF_00822 Urease accessory protein UreE [ureE]. 2 141 23.972 T 23-04-2016 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 RPE_RS18665 ff6dca86ded4e370771bd560a422e055 249 SUPERFAMILY SSF69737 74 140 4.58E-20 T 23-04-2016 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 RPE_RS18665 ff6dca86ded4e370771bd560a422e055 249 SMART SM00988 3 67 2.3E-19 T 23-04-2016 IPR004029 UreE urease accessory, N-terminal RPE_RS18665 ff6dca86ded4e370771bd560a422e055 249 SUPERFAMILY SSF69287 1 72 7.72E-16 T 23-04-2016 IPR004029 UreE urease accessory, N-terminal RPE_RS18665 ff6dca86ded4e370771bd560a422e055 249 Gene3D G3DSA:3.30.70.790 74 142 3.6E-29 T 23-04-2016 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 RPE_RS18665 ff6dca86ded4e370771bd560a422e055 249 Pfam PF05194 UreE urease accessory protein, C-terminal domain 74 162 7.5E-5 T 23-04-2016 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 RPE_RS20175 ea0d45311bc17ccf2e08b61ac87f9d54 327 Pfam PF10686 Protein of unknown function (DUF2493) 210 276 9.5E-30 T 23-04-2016 IPR019627 Mycobacteriophage D29, Gp61 RPE_RS23830 97b38039a0c0d3bbbd55eb5a548f226a 205 PANTHER PTHR33796 2 205 3.1E-71 T 23-04-2016 RPE_RS23830 97b38039a0c0d3bbbd55eb5a548f226a 205 SUPERFAMILY SSF47781 67 134 5.0E-20 T 23-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 RPE_RS23830 97b38039a0c0d3bbbd55eb5a548f226a 205 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 204 29.01 T 23-04-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 RPE_RS23830 97b38039a0c0d3bbbd55eb5a548f226a 205 Pfam PF07499 RuvA, C-terminal domain 158 204 5.4E-11 T 23-04-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 RPE_RS23830 97b38039a0c0d3bbbd55eb5a548f226a 205 SMART SM00278 73 92 31.0 T 23-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RPE_RS23830 97b38039a0c0d3bbbd55eb5a548f226a 205 SMART SM00278 108 127 21.0 T 23-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RPE_RS23830 97b38039a0c0d3bbbd55eb5a548f226a 205 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 187 2.2E-38 T 23-04-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 RPE_RS23830 97b38039a0c0d3bbbd55eb5a548f226a 205 Gene3D G3DSA:1.10.150.20 68 140 3.6E-27 T 23-04-2016 RPE_RS23830 97b38039a0c0d3bbbd55eb5a548f226a 205 SUPERFAMILY SSF50249 1 63 4.28E-16 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS23830 97b38039a0c0d3bbbd55eb5a548f226a 205 Gene3D G3DSA:1.10.8.10 156 203 1.5E-10 T 23-04-2016 RPE_RS23830 97b38039a0c0d3bbbd55eb5a548f226a 205 Pfam PF14520 Helix-hairpin-helix domain 72 130 2.4E-14 T 23-04-2016 RPE_RS23830 97b38039a0c0d3bbbd55eb5a548f226a 205 SUPERFAMILY SSF46929 158 204 1.07E-8 T 23-04-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 RPE_RS23830 97b38039a0c0d3bbbd55eb5a548f226a 205 Gene3D G3DSA:2.40.50.140 1 65 1.7E-23 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS23830 97b38039a0c0d3bbbd55eb5a548f226a 205 Pfam PF01330 RuvA N terminal domain 1 62 7.8E-18 T 23-04-2016 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 RPE_RS04525 3fe81813a23ac7498bbb8f38d990b3b4 241 SMART SM00318 21 144 2.3E-5 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RPE_RS04525 3fe81813a23ac7498bbb8f38d990b3b4 241 Gene3D G3DSA:2.40.50.90 26 117 4.9E-16 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RPE_RS04525 3fe81813a23ac7498bbb8f38d990b3b4 241 PANTHER PTHR12302:SF0 26 158 3.5E-21 T 23-04-2016 RPE_RS04525 3fe81813a23ac7498bbb8f38d990b3b4 241 PANTHER PTHR12302 26 158 3.5E-21 T 23-04-2016 RPE_RS04525 3fe81813a23ac7498bbb8f38d990b3b4 241 Pfam PF00565 Staphylococcal nuclease homologue 41 143 3.4E-12 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RPE_RS04525 3fe81813a23ac7498bbb8f38d990b3b4 241 SUPERFAMILY SSF50199 26 149 6.28E-27 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RPE_RS05780 a9d7446be9ef122e4039c794b05f4d0c 430 PANTHER PTHR33408 145 429 1.9E-13 T 23-04-2016 RPE_RS05780 a9d7446be9ef122e4039c794b05f4d0c 430 Pfam PF01609 Transposase DDE domain 200 424 2.6E-16 T 23-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 RPE_RS05780 a9d7446be9ef122e4039c794b05f4d0c 430 Pfam PF05598 Transposase domain (DUF772) 53 126 1.8E-20 T 23-04-2016 IPR008490 Transposase InsH, N-terminal RPE_RS24270 a4224fc3d7b6c9f80e3b7903f9788ac5 276 SUPERFAMILY SSF56281 60 247 2.12E-10 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS24270 a4224fc3d7b6c9f80e3b7903f9788ac5 276 Gene3D G3DSA:3.60.15.10 52 245 2.1E-28 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS24270 a4224fc3d7b6c9f80e3b7903f9788ac5 276 PANTHER PTHR39189 22 276 9.8E-52 T 23-04-2016 RPE_RS24270 a4224fc3d7b6c9f80e3b7903f9788ac5 276 Pfam PF13483 Beta-lactamase superfamily domain 60 230 5.6E-42 T 23-04-2016 RPE_RS15255 513de69290780c93a99e468fe04a0a54 244 SUPERFAMILY SSF160467 9 100 9.42E-22 T 23-04-2016 RPE_RS15255 513de69290780c93a99e468fe04a0a54 244 TIGRFAM TIGR00370 TIGR00370: sensor histidine kinase inhibitor, KipI family 14 218 1.2E-44 T 23-04-2016 IPR010016 KipI family RPE_RS15255 513de69290780c93a99e468fe04a0a54 244 Gene3D G3DSA:2.40.100.10 94 231 4.8E-45 T 23-04-2016 IPR029000 Cyclophilin-like domain RPE_RS15255 513de69290780c93a99e468fe04a0a54 244 SUPERFAMILY SSF50891 95 225 2.35E-41 T 23-04-2016 IPR029000 Cyclophilin-like domain RPE_RS15255 513de69290780c93a99e468fe04a0a54 244 PANTHER PTHR34698:SF2 6 236 2.4E-92 T 23-04-2016 RPE_RS15255 513de69290780c93a99e468fe04a0a54 244 SMART SM00796 8 209 1.2E-86 T 23-04-2016 IPR003833 Carboxyltransferase domain, subdomain C and D RPE_RS15255 513de69290780c93a99e468fe04a0a54 244 Gene3D G3DSA:3.30.1360.40 8 84 1.3E-22 T 23-04-2016 IPR024946 Arginine repressor C-terminal-like domain RPE_RS15255 513de69290780c93a99e468fe04a0a54 244 Pfam PF02682 Allophanate hydrolase subunit 1 9 209 3.3E-69 T 23-04-2016 IPR003833 Carboxyltransferase domain, subdomain C and D RPE_RS15255 513de69290780c93a99e468fe04a0a54 244 PANTHER PTHR34698 6 236 2.4E-92 T 23-04-2016 RPE_RS07545 7ad76aaf6352c9ea34a54ba052f45a47 166 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 38 161 7.5E-52 T 23-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 RPE_RS07545 7ad76aaf6352c9ea34a54ba052f45a47 166 Pfam PF01641 SelR domain 42 160 3.6E-51 T 23-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 RPE_RS07545 7ad76aaf6352c9ea34a54ba052f45a47 166 SUPERFAMILY SSF51316 37 162 1.73E-57 T 23-04-2016 IPR011057 Mss4-like RPE_RS07545 7ad76aaf6352c9ea34a54ba052f45a47 166 Gene3D G3DSA:2.170.150.20 33 162 6.5E-58 T 23-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 RPE_RS07545 7ad76aaf6352c9ea34a54ba052f45a47 166 PANTHER PTHR10173 36 161 6.9E-58 T 23-04-2016 IPR028427 Peptide methionine sulfoxide reductase GO:0006979|GO:0016671|GO:0030091 RPE_RS07545 7ad76aaf6352c9ea34a54ba052f45a47 166 PANTHER PTHR10173:SF18 36 161 6.9E-58 T 23-04-2016 RPE_RS05540 2b094bede9a91b142d652d48b27a8f2d 377 PANTHER PTHR34136 7 276 1.7E-55 T 23-04-2016 RPE_RS05540 2b094bede9a91b142d652d48b27a8f2d 377 Pfam PF13466 STAS domain 305 362 2.9E-9 T 23-04-2016 IPR002645 STAS domain RPE_RS05540 2b094bede9a91b142d652d48b27a8f2d 377 SUPERFAMILY SSF52091 287 370 4.91E-12 T 23-04-2016 IPR002645 STAS domain RPE_RS05540 2b094bede9a91b142d652d48b27a8f2d 377 Gene3D G3DSA:3.30.750.24 300 369 4.0E-13 T 23-04-2016 IPR002645 STAS domain RPE_RS05540 2b094bede9a91b142d652d48b27a8f2d 377 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 68 239 1.6E-24 T 23-04-2016 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00566 RPE_RS05540 2b094bede9a91b142d652d48b27a8f2d 377 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 70 234 2.6E-41 T 23-04-2016 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00566 RPE_RS11600 333edb56d0965e2d2728a15d9c8a3bd9 250 SUPERFAMILY SSF53474 4 230 1.19E-43 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS11600 333edb56d0965e2d2728a15d9c8a3bd9 250 Pfam PF00561 alpha/beta hydrolase fold 21 182 5.0E-25 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS11600 333edb56d0965e2d2728a15d9c8a3bd9 250 PANTHER PTHR10992 9 248 8.4E-47 T 23-04-2016 RPE_RS11600 333edb56d0965e2d2728a15d9c8a3bd9 250 Gene3D G3DSA:3.40.50.1820 4 230 7.7E-45 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS11600 333edb56d0965e2d2728a15d9c8a3bd9 250 PANTHER PTHR10992:SF771 9 248 8.4E-47 T 23-04-2016 RPE_RS15330 c9c4c3cad5dde4ac23e93fa2f388d053 406 Gene3D G3DSA:3.40.50.2300 158 301 3.2E-13 T 23-04-2016 RPE_RS15330 c9c4c3cad5dde4ac23e93fa2f388d053 406 SUPERFAMILY SSF53822 28 404 3.7E-86 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RPE_RS15330 c9c4c3cad5dde4ac23e93fa2f388d053 406 Gene3D G3DSA:3.40.50.2300 302 359 1.2E-27 T 23-04-2016 RPE_RS15330 c9c4c3cad5dde4ac23e93fa2f388d053 406 Gene3D G3DSA:3.40.50.2300 24 152 1.2E-27 T 23-04-2016 RPE_RS15330 c9c4c3cad5dde4ac23e93fa2f388d053 406 Pfam PF13458 Periplasmic binding protein 28 369 1.1E-82 T 23-04-2016 IPR028081 Leucine-binding protein domain RPE_RS15330 c9c4c3cad5dde4ac23e93fa2f388d053 406 PANTHER PTHR30483 1 406 1.9E-220 T 23-04-2016 RPE_RS15330 c9c4c3cad5dde4ac23e93fa2f388d053 406 PANTHER PTHR30483:SF17 1 406 1.9E-220 T 23-04-2016 RPE_RS03415 fc88c635e4ec364dfc6437f7d9a67cdb 1577 Gene3D G3DSA:2.160.20.60 1276 1570 2.1E-108 T 23-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 RPE_RS03415 fc88c635e4ec364dfc6437f7d9a67cdb 1577 Pfam PF01645 Conserved region in glutamate synthase 849 1220 3.8E-155 T 23-04-2016 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 RPE_RS03415 fc88c635e4ec364dfc6437f7d9a67cdb 1577 Gene3D G3DSA:3.20.20.70 896 1257 3.5E-182 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS03415 fc88c635e4ec364dfc6437f7d9a67cdb 1577 SUPERFAMILY SSF51395 489 1254 6.51E-263 T 23-04-2016 RPE_RS03415 fc88c635e4ec364dfc6437f7d9a67cdb 1577 Pfam PF04898 Glutamate synthase central domain 500 786 2.9E-115 T 23-04-2016 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 UniPathway: UPA00045 RPE_RS03415 fc88c635e4ec364dfc6437f7d9a67cdb 1577 Gene3D G3DSA:3.60.20.10 50 483 4.0E-190 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RPE_RS03415 fc88c635e4ec364dfc6437f7d9a67cdb 1577 SUPERFAMILY SSF56235 50 475 1.05E-159 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RPE_RS03415 fc88c635e4ec364dfc6437f7d9a67cdb 1577 PANTHER PTHR11938 39 1485 0.0 T 23-04-2016 RPE_RS03415 fc88c635e4ec364dfc6437f7d9a67cdb 1577 PANTHER PTHR11938 1514 1565 0.0 T 23-04-2016 RPE_RS03415 fc88c635e4ec364dfc6437f7d9a67cdb 1577 PANTHER PTHR11938:SF1 39 1485 0.0 T 23-04-2016 RPE_RS03415 fc88c635e4ec364dfc6437f7d9a67cdb 1577 PANTHER PTHR11938:SF1 1514 1565 0.0 T 23-04-2016 RPE_RS03415 fc88c635e4ec364dfc6437f7d9a67cdb 1577 Gene3D G3DSA:3.20.20.70 493 837 1.9E-109 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS03415 fc88c635e4ec364dfc6437f7d9a67cdb 1577 Pfam PF00310 Glutamine amidotransferases class-II 50 472 8.7E-188 T 23-04-2016 IPR017932 Glutamine amidotransferase type 2 domain RPE_RS03415 fc88c635e4ec364dfc6437f7d9a67cdb 1577 SUPERFAMILY SSF69336 1514 1561 2.22E-93 T 23-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 RPE_RS03415 fc88c635e4ec364dfc6437f7d9a67cdb 1577 SUPERFAMILY SSF69336 1269 1485 2.22E-93 T 23-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 RPE_RS03415 fc88c635e4ec364dfc6437f7d9a67cdb 1577 Pfam PF01493 GXGXG motif 1300 1486 1.8E-82 T 23-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 RPE_RS03280 80f24f5e0d93e500468d02aac48d393d 180 Pfam PF01327 Polypeptide deformylase 4 157 2.7E-51 T 23-04-2016 IPR023635 Peptide deformylase RPE_RS03280 80f24f5e0d93e500468d02aac48d393d 180 Gene3D G3DSA:3.90.45.10 5 169 2.2E-63 T 23-04-2016 IPR023635 Peptide deformylase RPE_RS03280 80f24f5e0d93e500468d02aac48d393d 180 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 160 1.4E-51 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RPE_RS03280 80f24f5e0d93e500468d02aac48d393d 180 PIRSF PIRSF004749 1 177 3.7E-53 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RPE_RS03280 80f24f5e0d93e500468d02aac48d393d 180 PRINTS PR01576 Peptide deformylase signature 94 105 9.1E-36 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RPE_RS03280 80f24f5e0d93e500468d02aac48d393d 180 PRINTS PR01576 Peptide deformylase signature 125 154 9.1E-36 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RPE_RS03280 80f24f5e0d93e500468d02aac48d393d 180 PRINTS PR01576 Peptide deformylase signature 33 62 9.1E-36 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RPE_RS03280 80f24f5e0d93e500468d02aac48d393d 180 PRINTS PR01576 Peptide deformylase signature 106 124 9.1E-36 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RPE_RS03280 80f24f5e0d93e500468d02aac48d393d 180 SUPERFAMILY SSF56420 2 168 5.23E-60 T 23-04-2016 IPR023635 Peptide deformylase RPE_RS03280 80f24f5e0d93e500468d02aac48d393d 180 Hamap MF_00163 Peptide deformylase [def]. 2 167 29.817 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RPE_RS03280 80f24f5e0d93e500468d02aac48d393d 180 PANTHER PTHR10458 1 169 1.6E-69 T 23-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RPE_RS19275 33849d17d0711932be7113abd8e08299 145 Pfam PF01230 HIT domain 15 108 4.7E-21 T 23-04-2016 IPR001310 Histidine triad (HIT) protein RPE_RS19275 33849d17d0711932be7113abd8e08299 145 SUPERFAMILY SSF54197 3 115 8.04E-34 T 23-04-2016 IPR011146 HIT-like domain GO:0003824 RPE_RS19275 33849d17d0711932be7113abd8e08299 145 PANTHER PTHR23089 1 108 2.3E-31 T 23-04-2016 IPR001310 Histidine triad (HIT) protein RPE_RS19275 33849d17d0711932be7113abd8e08299 145 PRINTS PR00332 Histidine triad family signature 9 25 8.3E-18 T 23-04-2016 IPR001310 Histidine triad (HIT) protein RPE_RS19275 33849d17d0711932be7113abd8e08299 145 PRINTS PR00332 Histidine triad family signature 97 107 8.3E-18 T 23-04-2016 IPR001310 Histidine triad (HIT) protein RPE_RS19275 33849d17d0711932be7113abd8e08299 145 PRINTS PR00332 Histidine triad family signature 30 48 8.3E-18 T 23-04-2016 IPR001310 Histidine triad (HIT) protein RPE_RS19275 33849d17d0711932be7113abd8e08299 145 PANTHER PTHR23089:SF7 1 108 2.3E-31 T 23-04-2016 RPE_RS19275 33849d17d0711932be7113abd8e08299 145 Gene3D G3DSA:3.30.428.10 3 110 3.9E-31 T 23-04-2016 IPR011146 HIT-like domain GO:0003824 RPE_RS17985 d2a323bbd8bc041dc46f4df880a08fbc 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 36.243 T 23-04-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 RPE_RS17985 d2a323bbd8bc041dc46f4df880a08fbc 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 23-04-2016 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 RPE_RS17985 d2a323bbd8bc041dc46f4df880a08fbc 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 9.7E-70 T 23-04-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 RPE_RS17985 d2a323bbd8bc041dc46f4df880a08fbc 156 PANTHER PTHR11205 1 156 2.2E-96 T 23-04-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 RPE_RS17985 d2a323bbd8bc041dc46f4df880a08fbc 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 8.3E-67 T 23-04-2016 IPR023798 Ribosomal protein S7 domain RPE_RS17985 d2a323bbd8bc041dc46f4df880a08fbc 156 PIRSF PIRSF002122 2 156 1.8E-60 T 23-04-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 RPE_RS17985 d2a323bbd8bc041dc46f4df880a08fbc 156 SUPERFAMILY SSF47973 4 149 3.01E-63 T 23-04-2016 IPR023798 Ribosomal protein S7 domain RPE_RS17985 d2a323bbd8bc041dc46f4df880a08fbc 156 Gene3D G3DSA:1.10.455.10 7 156 3.3E-67 T 23-04-2016 IPR023798 Ribosomal protein S7 domain RPE_RS22325 9a2575aab4a94b46407f3834e5a07493 208 PANTHER PTHR12992 6 163 8.0E-34 T 23-04-2016 RPE_RS22325 9a2575aab4a94b46407f3834e5a07493 208 ProSitePatterns PS00893 Nudix box signature. 72 93 - T 23-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RPE_RS22325 9a2575aab4a94b46407f3834e5a07493 208 SUPERFAMILY SSF55811 25 185 1.02E-30 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS22325 9a2575aab4a94b46407f3834e5a07493 208 PRINTS PR00502 NUDIX hydrolase family signature 81 96 3.1E-6 T 23-04-2016 IPR020476 NUDIX hydrolase RPE_RS22325 9a2575aab4a94b46407f3834e5a07493 208 PRINTS PR00502 NUDIX hydrolase family signature 67 81 3.1E-6 T 23-04-2016 IPR020476 NUDIX hydrolase RPE_RS22325 9a2575aab4a94b46407f3834e5a07493 208 Gene3D G3DSA:3.90.79.10 22 190 2.1E-35 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS22325 9a2575aab4a94b46407f3834e5a07493 208 Pfam PF00293 NUDIX domain 32 149 2.1E-17 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RPE_RS06475 25b251f319b4dc404aa16ca0a9e99a8f 237 Pfam PF00196 Bacterial regulatory proteins, luxR family 176 229 1.3E-8 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS06475 25b251f319b4dc404aa16ca0a9e99a8f 237 SUPERFAMILY SSF75516 3 168 3.4E-41 T 23-04-2016 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain RPE_RS06475 25b251f319b4dc404aa16ca0a9e99a8f 237 SMART SM00421 174 231 5.8E-9 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS06475 25b251f319b4dc404aa16ca0a9e99a8f 237 Gene3D G3DSA:1.10.10.10 180 236 1.3E-14 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS06475 25b251f319b4dc404aa16ca0a9e99a8f 237 SUPERFAMILY SSF46894 167 236 1.53E-12 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RPE_RS06475 25b251f319b4dc404aa16ca0a9e99a8f 237 Gene3D G3DSA:3.30.450.80 3 179 1.6E-39 T 23-04-2016 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain RPE_RS06475 25b251f319b4dc404aa16ca0a9e99a8f 237 Pfam PF03472 Autoinducer binding domain 16 162 2.0E-37 T 23-04-2016 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain RPE_RS05595 8e8fe985353e0bbc3b76e009d44fa9aa 449 Pfam PF04932 O-Antigen ligase 206 355 6.2E-6 T 23-04-2016 IPR007016 O-antigen ligase-related RPE_RS18370 8aa99a054b8d428b56983901e629aac1 471 Pfam PF12801 4Fe-4S binding domain 157 193 0.0023 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RPE_RS18370 8aa99a054b8d428b56983901e629aac1 471 Pfam PF12801 4Fe-4S binding domain 75 114 1.8E-9 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RPE_RS11515 a37f6c978f143abbd5025e23aa8a1d56 248 PIRSF PIRSF009120 1 248 2.9E-96 T 23-04-2016 IPR016545 Uncharacterised conserved protein UCP009120, proteasome-type protease, Sll0069 RPE_RS11515 a37f6c978f143abbd5025e23aa8a1d56 248 Gene3D G3DSA:3.60.20.10 2 205 5.5E-14 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RPE_RS11515 a37f6c978f143abbd5025e23aa8a1d56 248 SUPERFAMILY SSF56235 2 241 1.1E-32 T 23-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RPE_RS11515 a37f6c978f143abbd5025e23aa8a1d56 248 Pfam PF00227 Proteasome subunit 100 188 1.7E-5 T 23-04-2016 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: REACT_11045|Reactome: REACT_13|Reactome: REACT_13635|Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_383|Reactome: REACT_578|Reactome: REACT_6185|Reactome: REACT_6850 RPE_RS20110 761bdbfe3dcd04dc05345a3068e926bc 322 Pfam PF00437 Type II/IV secretion system protein 27 290 7.1E-83 T 23-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 RPE_RS20110 761bdbfe3dcd04dc05345a3068e926bc 322 PANTHER PTHR30258:SF12 22 311 6.3E-106 T 23-04-2016 RPE_RS20110 761bdbfe3dcd04dc05345a3068e926bc 322 TIGRFAM TIGR02782 TrbB_P: P-type conjugative transfer ATPase TrbB 13 314 4.4E-131 T 23-04-2016 IPR014149 Conjugative transfer, TrbB GO:0000746|GO:0005737 RPE_RS20110 761bdbfe3dcd04dc05345a3068e926bc 322 Gene3D G3DSA:3.30.450.90 26 118 3.9E-13 T 23-04-2016 RPE_RS20110 761bdbfe3dcd04dc05345a3068e926bc 322 Gene3D G3DSA:3.40.50.300 123 309 3.0E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS20110 761bdbfe3dcd04dc05345a3068e926bc 322 PANTHER PTHR30258 22 311 6.3E-106 T 23-04-2016 RPE_RS20110 761bdbfe3dcd04dc05345a3068e926bc 322 SUPERFAMILY SSF52540 23 283 3.61E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS24690 8e18ec1ede69d53d3228b4e4901ac624 921 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 490 651 5.9E-39 T 23-04-2016 IPR000160 GGDEF domain RPE_RS24690 8e18ec1ede69d53d3228b4e4901ac624 921 PANTHER PTHR10799 372 763 5.0E-108 T 23-04-2016 RPE_RS24690 8e18ec1ede69d53d3228b4e4901ac624 921 Gene3D G3DSA:3.30.70.270 495 661 6.4E-55 T 23-04-2016 RPE_RS24690 8e18ec1ede69d53d3228b4e4901ac624 921 SUPERFAMILY SSF55073 498 655 1.02E-46 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS24690 8e18ec1ede69d53d3228b4e4901ac624 921 Pfam PF00563 EAL domain 670 900 8.4E-75 T 23-04-2016 IPR001633 EAL domain RPE_RS24690 8e18ec1ede69d53d3228b4e4901ac624 921 Gene3D G3DSA:3.30.450.20 364 482 1.2E-11 T 23-04-2016 RPE_RS24690 8e18ec1ede69d53d3228b4e4901ac624 921 Pfam PF02743 Cache domain 37 200 4.1E-12 T 23-04-2016 IPR033479 Double Cache domain 1 RPE_RS24690 8e18ec1ede69d53d3228b4e4901ac624 921 PANTHER PTHR10799:SF657 372 763 5.0E-108 T 23-04-2016 RPE_RS24690 8e18ec1ede69d53d3228b4e4901ac624 921 SUPERFAMILY SSF141868 670 911 4.97E-91 T 23-04-2016 IPR001633 EAL domain RPE_RS24690 8e18ec1ede69d53d3228b4e4901ac624 921 SMART SM00267 482 653 1.5E-58 T 23-04-2016 IPR000160 GGDEF domain RPE_RS24690 8e18ec1ede69d53d3228b4e4901ac624 921 Pfam PF12860 PAS fold 374 484 9.5E-27 T 23-04-2016 RPE_RS24690 8e18ec1ede69d53d3228b4e4901ac624 921 Pfam PF00672 HAMP domain 275 343 2.5E-6 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS24690 8e18ec1ede69d53d3228b4e4901ac624 921 SUPERFAMILY SSF55785 357 480 1.71E-8 T 23-04-2016 IPR000014 PAS domain RPE_RS24690 8e18ec1ede69d53d3228b4e4901ac624 921 SMART SM00304 294 347 2.1E-4 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS24690 8e18ec1ede69d53d3228b4e4901ac624 921 Gene3D G3DSA:3.30.450.20 69 165 3.3E-19 T 23-04-2016 RPE_RS24690 8e18ec1ede69d53d3228b4e4901ac624 921 Gene3D G3DSA:3.20.20.450 667 910 2.9E-98 T 23-04-2016 IPR001633 EAL domain RPE_RS24690 8e18ec1ede69d53d3228b4e4901ac624 921 Pfam PF00990 Diguanylate cyclase, GGDEF domain 493 648 8.4E-46 T 23-04-2016 IPR000160 GGDEF domain RPE_RS24690 8e18ec1ede69d53d3228b4e4901ac624 921 SMART SM00052 663 905 2.8E-112 T 23-04-2016 IPR001633 EAL domain RPE_RS09085 4bd2929109270e391210528cd5f2b648 568 PANTHER PTHR32089:SF40 286 565 1.4E-145 T 23-04-2016 RPE_RS09085 4bd2929109270e391210528cd5f2b648 568 PANTHER PTHR32089:SF40 190 252 1.4E-145 T 23-04-2016 RPE_RS09085 4bd2929109270e391210528cd5f2b648 568 SMART SM00304 217 270 2.2E-8 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS09085 4bd2929109270e391210528cd5f2b648 568 PANTHER PTHR32089 286 565 1.4E-145 T 23-04-2016 RPE_RS09085 4bd2929109270e391210528cd5f2b648 568 PANTHER PTHR32089 190 252 1.4E-145 T 23-04-2016 RPE_RS09085 4bd2929109270e391210528cd5f2b648 568 Pfam PF00672 HAMP domain 198 261 4.1E-11 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS09085 4bd2929109270e391210528cd5f2b648 568 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 371 561 9.7E-32 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS09085 4bd2929109270e391210528cd5f2b648 568 SUPERFAMILY SSF58104 247 272 2.09E-58 T 23-04-2016 RPE_RS09085 4bd2929109270e391210528cd5f2b648 568 SUPERFAMILY SSF58104 314 561 2.09E-58 T 23-04-2016 RPE_RS09085 4bd2929109270e391210528cd5f2b648 568 SMART SM00283 304 562 7.7E-34 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS09085 4bd2929109270e391210528cd5f2b648 568 Gene3D G3DSA:1.10.287.950 324 531 2.6E-45 T 23-04-2016 RPE_RS09085 4bd2929109270e391210528cd5f2b648 568 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 225 519 0.001 T 23-04-2016 RPE_RS19420 db0913c4ff1395713e4f79ad612653ab 524 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 49 447 2.5E-100 T 23-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 RPE_RS19420 db0913c4ff1395713e4f79ad612653ab 524 PANTHER PTHR33712:SF3 8 507 1.1E-269 T 23-04-2016 RPE_RS19420 db0913c4ff1395713e4f79ad612653ab 524 Gene3D G3DSA:3.40.50.1980 325 467 1.5E-45 T 23-04-2016 RPE_RS19420 db0913c4ff1395713e4f79ad612653ab 524 SUPERFAMILY SSF53807 4 453 2.94E-125 T 23-04-2016 RPE_RS19420 db0913c4ff1395713e4f79ad612653ab 524 PANTHER PTHR33712 8 507 1.1E-269 T 23-04-2016 RPE_RS19420 db0913c4ff1395713e4f79ad612653ab 524 TIGRFAM TIGR01861 ANFD: nitrogenase iron-iron protein, alpha chain 1 507 0.0 T 23-04-2016 IPR011290 Nitrogenase iron-iron protein, alpha chain GO:0009399|GO:0016163|GO:0051536|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 RPE_RS19420 db0913c4ff1395713e4f79ad612653ab 524 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 136 150 - T 23-04-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 RPE_RS19420 db0913c4ff1395713e4f79ad612653ab 524 Gene3D G3DSA:3.40.50.1980 4 164 2.1E-47 T 23-04-2016 RPE_RS19420 db0913c4ff1395713e4f79ad612653ab 524 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 68 75 - T 23-04-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 RPE_RS19420 db0913c4ff1395713e4f79ad612653ab 524 Gene3D G3DSA:3.40.50.1980 190 301 1.1E-33 T 23-04-2016 RPE_RS19420 db0913c4ff1395713e4f79ad612653ab 524 TIGRFAM TIGR01862 N2-ase-Ialpha: nitrogenase component I, alpha chain 14 454 9.7E-211 T 23-04-2016 IPR010143 Nitrogenase component 1, alpha chain GO:0009399|GO:0016163|GO:0051536|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 RPE_RS19420 db0913c4ff1395713e4f79ad612653ab 524 TIGRFAM TIGR01284 alt_nitrog_alph: nitrogenase alpha chain 4 459 2.4E-254 T 23-04-2016 IPR005974 Nitrogenase alpha chain GO:0009399|GO:0016163|GO:0051536|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 RPE_RS20525 c95a052559e140bc5b0c0235c7333d77 89 Pfam PF10073 Uncharacterized protein conserved in bacteria (DUF2312) 16 87 1.4E-35 T 23-04-2016 IPR018753 Azospirillum phage Cd, Gp10 RPE_RS20525 c95a052559e140bc5b0c0235c7333d77 89 Hamap MF_00797 UPF0335 protein . 11 88 23.274 T 23-04-2016 IPR018753 Azospirillum phage Cd, Gp10 RPE_RS19675 d435e71fc8c7f1e32ac691076ade7a20 560 PANTHER PTHR11918 16 421 2.4E-151 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein RPE_RS19675 d435e71fc8c7f1e32ac691076ade7a20 560 Pfam PF02310 B12 binding domain 14 132 6.5E-23 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RPE_RS19675 d435e71fc8c7f1e32ac691076ade7a20 560 PANTHER PTHR11918:SF70 16 421 2.4E-151 T 23-04-2016 RPE_RS19675 d435e71fc8c7f1e32ac691076ade7a20 560 SUPERFAMILY SSF102114 193 404 2.75E-41 T 23-04-2016 RPE_RS19675 d435e71fc8c7f1e32ac691076ade7a20 560 Pfam PF13353 4Fe-4S single cluster domain 205 300 4.5E-5 T 23-04-2016 RPE_RS19675 d435e71fc8c7f1e32ac691076ade7a20 560 Pfam PF04055 Radical SAM superfamily 204 367 2.1E-18 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RPE_RS19675 d435e71fc8c7f1e32ac691076ade7a20 560 SMART SM00729 198 411 3.5E-30 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RPE_RS19675 d435e71fc8c7f1e32ac691076ade7a20 560 SUPERFAMILY SSF52242 49 136 6.28E-6 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RPE_RS19675 d435e71fc8c7f1e32ac691076ade7a20 560 TIGRFAM TIGR02026 BchE: magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase 2 505 1.7E-238 T 23-04-2016 IPR011772 Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase GO:0015995|GO:0016709|GO:0050661|GO:0055114 KEGG: 00130+1.14.13.-|KEGG: 00140+1.14.13.-|KEGG: 00232+1.14.13.-|KEGG: 00261+1.14.13.-|KEGG: 00340+1.14.13.-|KEGG: 00360+1.14.13.-|KEGG: 00361+1.14.13.-|KEGG: 00362+1.14.13.-|KEGG: 00363+1.14.13.-|KEGG: 00380+1.14.13.-|KEGG: 00403+1.14.13.-|KEGG: 00590+1.14.13.-|KEGG: 00591+1.14.13.-|KEGG: 00622+1.14.13.-|KEGG: 00623+1.14.13.-|KEGG: 00624+1.14.13.-|KEGG: 00625+1.14.13.-|KEGG: 00626+1.14.13.-|KEGG: 00627+1.14.13.-|KEGG: 00640+1.14.13.-|KEGG: 00643+1.14.13.-|KEGG: 00830+1.14.13.-|KEGG: 00903+1.14.13.-|KEGG: 00904+1.14.13.-|KEGG: 00905+1.14.13.-|KEGG: 00906+1.14.13.-|KEGG: 00930+1.14.13.-|KEGG: 00940+1.14.13.-|KEGG: 00941+1.14.13.-|KEGG: 00943+1.14.13.-|KEGG: 00945+1.14.13.-|KEGG: 00950+1.14.13.-|KEGG: 00966+1.14.13.-|KEGG: 00980+1.14.13.-|KEGG: 00982+1.14.13.-|KEGG: 00983+1.14.13.- RPE_RS19675 d435e71fc8c7f1e32ac691076ade7a20 560 Gene3D G3DSA:3.80.30.20 204 397 9.8E-40 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RPE_RS04425 6b998e9bd0e0ca34ace1a806c011aae6 277 Pfam PF00459 Inositol monophosphatase family 24 272 3.8E-42 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RPE_RS04425 6b998e9bd0e0ca34ace1a806c011aae6 277 PANTHER PTHR20854:SF38 13 272 8.0E-56 T 23-04-2016 RPE_RS04425 6b998e9bd0e0ca34ace1a806c011aae6 277 Gene3D G3DSA:3.40.190.80 192 273 5.4E-19 T 23-04-2016 RPE_RS04425 6b998e9bd0e0ca34ace1a806c011aae6 277 SUPERFAMILY SSF56655 17 274 2.09E-64 T 23-04-2016 RPE_RS04425 6b998e9bd0e0ca34ace1a806c011aae6 277 PRINTS PR00377 Inositol monophosphatase superfamily signature 76 92 1.0E-20 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RPE_RS04425 6b998e9bd0e0ca34ace1a806c011aae6 277 PRINTS PR00377 Inositol monophosphatase superfamily signature 54 74 1.0E-20 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RPE_RS04425 6b998e9bd0e0ca34ace1a806c011aae6 277 PRINTS PR00377 Inositol monophosphatase superfamily signature 147 170 1.0E-20 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RPE_RS04425 6b998e9bd0e0ca34ace1a806c011aae6 277 PRINTS PR00377 Inositol monophosphatase superfamily signature 185 206 1.0E-20 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RPE_RS04425 6b998e9bd0e0ca34ace1a806c011aae6 277 PRINTS PR00377 Inositol monophosphatase superfamily signature 217 241 1.0E-20 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RPE_RS04425 6b998e9bd0e0ca34ace1a806c011aae6 277 PRINTS PR00377 Inositol monophosphatase superfamily signature 98 114 1.0E-20 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RPE_RS04425 6b998e9bd0e0ca34ace1a806c011aae6 277 PANTHER PTHR20854 13 272 8.0E-56 T 23-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RPE_RS04425 6b998e9bd0e0ca34ace1a806c011aae6 277 Gene3D G3DSA:3.30.540.10 18 169 4.4E-41 T 23-04-2016 RPE_RS06935 088d34d1f0809320b2462464e45d009b 283 SUPERFAMILY SSF46785 13 80 6.61E-10 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS06935 088d34d1f0809320b2462464e45d009b 283 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 48 66 2.8E-7 T 23-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RPE_RS06935 088d34d1f0809320b2462464e45d009b 283 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 34 48 2.8E-7 T 23-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RPE_RS06935 088d34d1f0809320b2462464e45d009b 283 Pfam PF00455 DeoR C terminal sensor domain 85 241 9.6E-51 T 23-04-2016 IPR014036 DeoR C-terminal sensor domain RPE_RS06935 088d34d1f0809320b2462464e45d009b 283 SMART SM01134 82 243 2.0E-67 T 23-04-2016 RPE_RS06935 088d34d1f0809320b2462464e45d009b 283 Gene3D G3DSA:1.10.10.10 13 61 1.0E-6 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS06935 088d34d1f0809320b2462464e45d009b 283 PANTHER PTHR30363 10 265 3.8E-112 T 23-04-2016 RPE_RS06935 088d34d1f0809320b2462464e45d009b 283 Pfam PF08220 DeoR-like helix-turn-helix domain 16 70 5.6E-14 T 23-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RPE_RS06935 088d34d1f0809320b2462464e45d009b 283 Gene3D G3DSA:3.40.50.1360 85 229 1.6E-14 T 23-04-2016 RPE_RS06935 088d34d1f0809320b2462464e45d009b 283 SUPERFAMILY SSF100950 85 243 3.59E-29 T 23-04-2016 RPE_RS06935 088d34d1f0809320b2462464e45d009b 283 SMART SM00420 16 68 5.2E-11 T 23-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RPE_RS06935 088d34d1f0809320b2462464e45d009b 283 PANTHER PTHR30363:SF1 10 265 3.8E-112 T 23-04-2016 RPE_RS16860 e5b69912037db480167ecd9f5df19c70 311 PANTHER PTHR34861 30 311 3.9E-35 T 23-04-2016 RPE_RS16860 e5b69912037db480167ecd9f5df19c70 311 SUPERFAMILY SSF102198 56 310 1.96E-31 T 23-04-2016 RPE_RS16860 e5b69912037db480167ecd9f5df19c70 311 Pfam PF04199 Putative cyclase 61 247 3.7E-27 T 23-04-2016 IPR007325 Kynurenine formamidase GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|UniPathway: UPA00333 RPE_RS16860 e5b69912037db480167ecd9f5df19c70 311 Gene3D G3DSA:3.50.30.50 57 310 1.0E-36 T 23-04-2016 RPE_RS23075 b1bdc6d893cd2bb779cf36eb9b8da63a 454 Gene3D G3DSA:3.20.20.80 23 450 1.1E-152 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RPE_RS23075 b1bdc6d893cd2bb779cf36eb9b8da63a 454 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 27 41 - T 23-04-2016 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site RPE_RS23075 b1bdc6d893cd2bb779cf36eb9b8da63a 454 SUPERFAMILY SSF51445 25 450 5.14E-153 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RPE_RS23075 b1bdc6d893cd2bb779cf36eb9b8da63a 454 PANTHER PTHR10353 25 449 2.6E-184 T 23-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RPE_RS23075 b1bdc6d893cd2bb779cf36eb9b8da63a 454 Pfam PF00232 Glycosyl hydrolase family 1 21 450 9.3E-141 T 23-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RPE_RS23075 b1bdc6d893cd2bb779cf36eb9b8da63a 454 PRINTS PR00131 Glycosyl hydrolase family 1 signature 377 388 3.9E-22 T 23-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RPE_RS23075 b1bdc6d893cd2bb779cf36eb9b8da63a 454 PRINTS PR00131 Glycosyl hydrolase family 1 signature 422 434 3.9E-22 T 23-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RPE_RS23075 b1bdc6d893cd2bb779cf36eb9b8da63a 454 PRINTS PR00131 Glycosyl hydrolase family 1 signature 356 364 3.9E-22 T 23-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RPE_RS23075 b1bdc6d893cd2bb779cf36eb9b8da63a 454 PRINTS PR00131 Glycosyl hydrolase family 1 signature 294 308 3.9E-22 T 23-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RPE_RS23075 b1bdc6d893cd2bb779cf36eb9b8da63a 454 PRINTS PR00131 Glycosyl hydrolase family 1 signature 398 415 3.9E-22 T 23-04-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RPE_RS23075 b1bdc6d893cd2bb779cf36eb9b8da63a 454 TIGRFAM TIGR03356 BGL: beta-galactosidase 24 444 5.4E-169 T 23-04-2016 IPR017736 Glycoside hydrolase, family 1, beta-glucosidase GO:0008422|GO:0030245 KEGG: 00460+3.2.1.21|KEGG: 00500+3.2.1.21|KEGG: 00940+3.2.1.21|MetaCyc: PWY-3121|MetaCyc: PWY-5176|MetaCyc: PWY-6002|MetaCyc: PWY-6788|MetaCyc: PWY-7089|MetaCyc: PWY-7091|MetaCyc: PWY-7092 RPE_RS23075 b1bdc6d893cd2bb779cf36eb9b8da63a 454 PANTHER PTHR10353:SF36 25 449 2.6E-184 T 23-04-2016 RPE_RS22755 9c9172dca661c62d14e1616b0af65635 333 Pfam PF16220 Domain of unknown function (DUF4880) 13 55 3.4E-12 T 23-04-2016 IPR032623 FecR, N-terminal RPE_RS22755 9c9172dca661c62d14e1616b0af65635 333 PIRSF PIRSF018266 5 333 7.1E-67 T 23-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component RPE_RS22755 9c9172dca661c62d14e1616b0af65635 333 PANTHER PTHR30273:SF2 9 333 1.5E-44 T 23-04-2016 RPE_RS22755 9c9172dca661c62d14e1616b0af65635 333 Pfam PF16344 Domain of unknown function (DUF4974) 232 311 7.4E-8 T 23-04-2016 IPR032508 Protein FecR, C-terminal RPE_RS22755 9c9172dca661c62d14e1616b0af65635 333 Pfam PF04773 FecR protein 125 222 4.7E-13 T 23-04-2016 IPR006860 FecR protein RPE_RS22755 9c9172dca661c62d14e1616b0af65635 333 PANTHER PTHR30273 9 333 1.5E-44 T 23-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component RPE_RS03765 94b621181d4071d03ebd2687a1ee9d03 318 SUPERFAMILY SSF51735 3 144 4.24E-42 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS03765 94b621181d4071d03ebd2687a1ee9d03 318 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 124 2.2E-21 T 23-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 RPE_RS03765 94b621181d4071d03ebd2687a1ee9d03 318 Gene3D G3DSA:3.40.50.720 2 135 1.3E-41 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS03765 94b621181d4071d03ebd2687a1ee9d03 318 SUPERFAMILY SSF55347 129 290 2.07E-10 T 23-04-2016 RPE_RS03765 94b621181d4071d03ebd2687a1ee9d03 318 Gene3D G3DSA:3.30.360.10 136 302 5.5E-17 T 23-04-2016 RPE_RS03765 94b621181d4071d03ebd2687a1ee9d03 318 PANTHER PTHR22604 1 316 6.0E-48 T 23-04-2016 RPE_RS08695 4162c9e7e358b48b0f5a7c958683889d 242 SUPERFAMILY SSF54631 1 149 6.44E-37 T 23-04-2016 RPE_RS08695 4162c9e7e358b48b0f5a7c958683889d 242 Gene3D G3DSA:3.20.20.70 2 145 7.4E-36 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS08695 4162c9e7e358b48b0f5a7c958683889d 242 PANTHER PTHR11911 1 208 7.9E-52 T 23-04-2016 RPE_RS08695 4162c9e7e358b48b0f5a7c958683889d 242 SMART SM00116 97 144 2.6E-9 T 23-04-2016 IPR000644 CBS domain RPE_RS08695 4162c9e7e358b48b0f5a7c958683889d 242 SMART SM00116 10 58 2.6E-11 T 23-04-2016 IPR000644 CBS domain RPE_RS08695 4162c9e7e358b48b0f5a7c958683889d 242 PIRSF PIRSF036990 1 234 1.8E-93 T 23-04-2016 IPR017080 Uncharacterised conserved protein UCP036990, CBS, BON RPE_RS08695 4162c9e7e358b48b0f5a7c958683889d 242 Pfam PF04972 BON domain 157 221 1.4E-13 T 23-04-2016 IPR007055 BON domain RPE_RS08695 4162c9e7e358b48b0f5a7c958683889d 242 PANTHER PTHR11911:SF90 1 208 7.9E-52 T 23-04-2016 RPE_RS08695 4162c9e7e358b48b0f5a7c958683889d 242 Pfam PF00571 CBS domain 90 144 1.9E-14 T 23-04-2016 IPR000644 CBS domain RPE_RS08695 4162c9e7e358b48b0f5a7c958683889d 242 Pfam PF00571 CBS domain 4 55 1.2E-15 T 23-04-2016 IPR000644 CBS domain RPE_RS22380 746c8b664d0043300477a4ba7106fec1 156 PANTHER PTHR11717 13 147 3.0E-35 T 23-04-2016 RPE_RS22380 746c8b664d0043300477a4ba7106fec1 156 SMART SM00226 11 149 1.9E-21 T 23-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily RPE_RS22380 746c8b664d0043300477a4ba7106fec1 156 Gene3D G3DSA:3.40.50.270 12 147 3.4E-29 T 23-04-2016 RPE_RS22380 746c8b664d0043300477a4ba7106fec1 156 SUPERFAMILY SSF52788 12 147 1.16E-31 T 23-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily RPE_RS22380 746c8b664d0043300477a4ba7106fec1 156 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 13 145 1.3E-13 T 23-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily RPE_RS22380 746c8b664d0043300477a4ba7106fec1 156 PANTHER PTHR11717:SF18 13 147 3.0E-35 T 23-04-2016 RPE_RS22035 2f9c1324a54e03a3744ced9c8c1d0e7a 144 Pfam PF04480 Protein of unknown function (DUF559) 11 117 6.1E-37 T 23-04-2016 IPR007569 Domain of unknown function DUF559 RPE_RS22035 2f9c1324a54e03a3744ced9c8c1d0e7a 144 PANTHER PTHR38590:SF1 1 126 1.7E-39 T 23-04-2016 RPE_RS22035 2f9c1324a54e03a3744ced9c8c1d0e7a 144 PANTHER PTHR38590 1 126 1.7E-39 T 23-04-2016 RPE_RS22035 2f9c1324a54e03a3744ced9c8c1d0e7a 144 SUPERFAMILY SSF52980 9 117 5.15E-23 T 23-04-2016 IPR011335 Restriction endonuclease type II-like RPE_RS22035 2f9c1324a54e03a3744ced9c8c1d0e7a 144 Gene3D G3DSA:3.40.960.10 77 116 4.3E-4 T 23-04-2016 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 RPE_RS22515 fbcffe3db3b96fe4e9db470b6696eb9f 347 SUPERFAMILY SSF144083 282 343 6.67E-16 T 23-04-2016 RPE_RS22515 fbcffe3db3b96fe4e9db470b6696eb9f 347 Gene3D G3DSA:1.20.58.340 161 265 4.2E-10 T 23-04-2016 RPE_RS22515 fbcffe3db3b96fe4e9db470b6696eb9f 347 PANTHER PTHR21535 101 347 1.7E-16 T 23-04-2016 RPE_RS22515 fbcffe3db3b96fe4e9db470b6696eb9f 347 SUPERFAMILY SSF143865 25 274 2.48E-35 T 23-04-2016 RPE_RS22515 fbcffe3db3b96fe4e9db470b6696eb9f 347 Gene3D G3DSA:1.20.58.340 277 344 3.2E-18 T 23-04-2016 RPE_RS22515 fbcffe3db3b96fe4e9db470b6696eb9f 347 Pfam PF01544 CorA-like Mg2+ transporter protein 56 342 5.3E-53 T 23-04-2016 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 RPE_RS10970 532dbd1dc1c850b60588c50f2d8c6b84 592 Gene3D G3DSA:3.40.50.1220 197 371 9.5E-64 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RPE_RS10970 532dbd1dc1c850b60588c50f2d8c6b84 592 PANTHER PTHR18968:SF116 5 575 0.0 T 23-04-2016 RPE_RS10970 532dbd1dc1c850b60588c50f2d8c6b84 592 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 12 571 1.2E-244 T 23-04-2016 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 RPE_RS10970 532dbd1dc1c850b60588c50f2d8c6b84 592 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 402 549 3.8E-48 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RPE_RS10970 532dbd1dc1c850b60588c50f2d8c6b84 592 Gene3D G3DSA:3.40.50.970 11 186 6.4E-78 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS10970 532dbd1dc1c850b60588c50f2d8c6b84 592 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 12 176 1.2E-61 T 23-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RPE_RS10970 532dbd1dc1c850b60588c50f2d8c6b84 592 SUPERFAMILY SSF52518 378 575 1.03E-65 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS10970 532dbd1dc1c850b60588c50f2d8c6b84 592 SUPERFAMILY SSF52518 10 186 4.65E-67 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS10970 532dbd1dc1c850b60588c50f2d8c6b84 592 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 203 337 7.7E-44 T 23-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RPE_RS10970 532dbd1dc1c850b60588c50f2d8c6b84 592 PANTHER PTHR18968 5 575 0.0 T 23-04-2016 RPE_RS10970 532dbd1dc1c850b60588c50f2d8c6b84 592 SUPERFAMILY SSF52467 196 367 1.27E-63 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RPE_RS10970 532dbd1dc1c850b60588c50f2d8c6b84 592 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 438 457 - T 23-04-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 RPE_RS10970 532dbd1dc1c850b60588c50f2d8c6b84 592 Gene3D G3DSA:3.40.50.970 372 580 3.3E-71 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS04945 1389b7c7bdefac4a3f932810206c8eb8 279 PANTHER PTHR18968 13 269 4.3E-95 T 23-04-2016 RPE_RS04945 1389b7c7bdefac4a3f932810206c8eb8 279 PANTHER PTHR18968:SF89 13 269 4.3E-95 T 23-04-2016 RPE_RS04945 1389b7c7bdefac4a3f932810206c8eb8 279 SUPERFAMILY SSF52518 18 226 3.75E-71 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS04945 1389b7c7bdefac4a3f932810206c8eb8 279 Gene3D G3DSA:3.40.50.970 20 226 1.2E-69 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS04945 1389b7c7bdefac4a3f932810206c8eb8 279 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 57 203 1.4E-33 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RPE_RS17860 5338b75e73ec063ac543eddb5ff1303e 356 Hamap MF_00235 Adenylate kinase [adk]. 1 192 42.949 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RPE_RS17860 5338b75e73ec063ac543eddb5ff1303e 356 PRINTS PR00094 Adenylate kinase signature 81 97 4.8E-34 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RPE_RS17860 5338b75e73ec063ac543eddb5ff1303e 356 PRINTS PR00094 Adenylate kinase signature 156 170 4.8E-34 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RPE_RS17860 5338b75e73ec063ac543eddb5ff1303e 356 PRINTS PR00094 Adenylate kinase signature 4 17 4.8E-34 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RPE_RS17860 5338b75e73ec063ac543eddb5ff1303e 356 PRINTS PR00094 Adenylate kinase signature 139 154 4.8E-34 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RPE_RS17860 5338b75e73ec063ac543eddb5ff1303e 356 PRINTS PR00094 Adenylate kinase signature 32 46 4.8E-34 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RPE_RS17860 5338b75e73ec063ac543eddb5ff1303e 356 PANTHER PTHR23359 139 206 4.3E-79 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RPE_RS17860 5338b75e73ec063ac543eddb5ff1303e 356 PANTHER PTHR23359 1 123 4.3E-79 T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RPE_RS17860 5338b75e73ec063ac543eddb5ff1303e 356 Gene3D G3DSA:3.40.50.300 1 190 1.1E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS17860 5338b75e73ec063ac543eddb5ff1303e 356 TIGRFAM TIGR01351 adk: adenylate kinase 2 191 5.6E-61 T 23-04-2016 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RPE_RS17860 5338b75e73ec063ac543eddb5ff1303e 356 SUPERFAMILY SSF52540 1 192 3.41E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS17860 5338b75e73ec063ac543eddb5ff1303e 356 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 23-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RPE_RS17860 5338b75e73ec063ac543eddb5ff1303e 356 Pfam PF00406 Adenylate kinase 5 169 6.8E-55 T 23-04-2016 RPE_RS19335 6385fbab42db2a040b71c8324cf9164d 235 TIGRFAM TIGR02866 CoxB: cytochrome c oxidase, subunit II 32 224 4.3E-49 T 23-04-2016 IPR014222 Cytochrome c oxidase, subunit II GO:0016021|GO:0016491 RPE_RS19335 6385fbab42db2a040b71c8324cf9164d 235 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 144 217 4.1E-19 T 23-04-2016 IPR002429 Cytochrome c oxidase subunit II C-terminal GO:0004129|GO:0005507|GO:0016020 RPE_RS19335 6385fbab42db2a040b71c8324cf9164d 235 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 163 211 - T 23-04-2016 IPR001505 Copper centre Cu(A) GO:0005507 RPE_RS19335 6385fbab42db2a040b71c8324cf9164d 235 Gene3D G3DSA:2.60.40.420 110 228 9.7E-41 T 23-04-2016 IPR008972 Cupredoxin RPE_RS19335 6385fbab42db2a040b71c8324cf9164d 235 PANTHER PTHR22888 1 235 4.4E-47 T 23-04-2016 RPE_RS19335 6385fbab42db2a040b71c8324cf9164d 235 SUPERFAMILY SSF49503 110 229 9.64E-42 T 23-04-2016 IPR008972 Cupredoxin RPE_RS03040 1d66950634789fe41d78df72adad51b3 339 SMART SM00829 10 337 1.2E-13 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RPE_RS03040 1d66950634789fe41d78df72adad51b3 339 PANTHER PTHR11695 15 339 2.8E-110 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RPE_RS03040 1d66950634789fe41d78df72adad51b3 339 SUPERFAMILY SSF51735 140 314 2.34E-48 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS03040 1d66950634789fe41d78df72adad51b3 339 Gene3D G3DSA:3.90.180.10 1 169 1.9E-37 T 23-04-2016 IPR011032 GroES-like RPE_RS03040 1d66950634789fe41d78df72adad51b3 339 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 131 5.9E-24 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RPE_RS03040 1d66950634789fe41d78df72adad51b3 339 Pfam PF00107 Zinc-binding dehydrogenase 175 302 1.5E-34 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RPE_RS03040 1d66950634789fe41d78df72adad51b3 339 PANTHER PTHR11695:SF605 15 339 2.8E-110 T 23-04-2016 RPE_RS03040 1d66950634789fe41d78df72adad51b3 339 Gene3D G3DSA:3.40.50.720 170 286 1.2E-33 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS03040 1d66950634789fe41d78df72adad51b3 339 SUPERFAMILY SSF50129 1 171 1.1E-42 T 23-04-2016 IPR011032 GroES-like RPE_RS08350 5163afa423cd8bd25353d4b48901f8fe 302 PANTHER PTHR22908 10 298 3.5E-155 T 23-04-2016 RPE_RS08350 5163afa423cd8bd25353d4b48901f8fe 302 Gene3D G3DSA:3.40.50.300 37 227 2.1E-33 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS08350 5163afa423cd8bd25353d4b48901f8fe 302 Pfam PF07728 AAA domain (dynein-related subfamily) 43 197 2.7E-10 T 23-04-2016 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 RPE_RS08350 5163afa423cd8bd25353d4b48901f8fe 302 PANTHER PTHR22908:SF67 10 298 3.5E-155 T 23-04-2016 RPE_RS08350 5163afa423cd8bd25353d4b48901f8fe 302 SMART SM00382 39 217 1.8E-4 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS08350 5163afa423cd8bd25353d4b48901f8fe 302 SUPERFAMILY SSF52540 117 281 6.44E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS08350 5163afa423cd8bd25353d4b48901f8fe 302 SUPERFAMILY SSF52540 37 83 6.44E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS11020 5ed64555cfe1dc25e430685b13886325 567 SUPERFAMILY SSF53649 309 458 1.41E-8 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 RPE_RS11020 5ed64555cfe1dc25e430685b13886325 567 Gene3D G3DSA:3.40.720.10 310 457 1.7E-4 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 RPE_RS11020 5ed64555cfe1dc25e430685b13886325 567 Pfam PF00884 Sulfatase 303 464 9.0E-8 T 23-04-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 RPE_RS10635 895b92132def97f70c51edba8021c5f8 560 Gene3D G3DSA:3.40.50.300 434 510 3.1E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10635 895b92132def97f70c51edba8021c5f8 560 SUPERFAMILY SSF52540 3 50 3.47E-26 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10635 895b92132def97f70c51edba8021c5f8 560 SUPERFAMILY SSF52540 342 511 3.47E-26 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10635 895b92132def97f70c51edba8021c5f8 560 PANTHER PTHR11059 2 559 5.7E-147 T 23-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 RPE_RS10635 895b92132def97f70c51edba8021c5f8 560 Pfam PF02463 RecF/RecN/SMC N terminal domain 14 510 1.2E-13 T 23-04-2016 IPR003395 RecF/RecN/SMC, N-terminal RPE_RS10635 895b92132def97f70c51edba8021c5f8 560 Gene3D G3DSA:3.40.50.300 1 210 4.7E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10635 895b92132def97f70c51edba8021c5f8 560 SUPERFAMILY SSF52540 1 220 1.42E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10635 895b92132def97f70c51edba8021c5f8 560 PIRSF PIRSF003128 1 560 6.1E-151 T 23-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 RPE_RS10635 895b92132def97f70c51edba8021c5f8 560 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 557 2.4E-139 T 23-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 RPE_RS12715 6b1f51014f9e62b7e9a1867e225b65c1 700 PANTHER PTHR22773:SF50 82 646 3.3E-259 T 23-04-2016 RPE_RS12715 6b1f51014f9e62b7e9a1867e225b65c1 700 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 83 693 4.6E-253 T 23-04-2016 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 RPE_RS12715 6b1f51014f9e62b7e9a1867e225b65c1 700 PANTHER PTHR22773 82 646 3.3E-259 T 23-04-2016 RPE_RS12715 6b1f51014f9e62b7e9a1867e225b65c1 700 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 328 350 1.8E-12 T 23-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RPE_RS12715 6b1f51014f9e62b7e9a1867e225b65c1 700 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 140 160 1.8E-12 T 23-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RPE_RS12715 6b1f51014f9e62b7e9a1867e225b65c1 700 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 482 504 1.8E-12 T 23-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RPE_RS12715 6b1f51014f9e62b7e9a1867e225b65c1 700 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 122 177 6.5E-25 T 23-04-2016 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal RPE_RS12715 6b1f51014f9e62b7e9a1867e225b65c1 700 Pfam PF00361 Proton-conducting membrane transporter 189 485 2.3E-94 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RPE_RS12715 6b1f51014f9e62b7e9a1867e225b65c1 700 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 213 234 8.7E-67 T 23-04-2016 RPE_RS12715 6b1f51014f9e62b7e9a1867e225b65c1 700 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 138 163 8.7E-67 T 23-04-2016 RPE_RS12715 6b1f51014f9e62b7e9a1867e225b65c1 700 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 483 502 8.7E-67 T 23-04-2016 RPE_RS12715 6b1f51014f9e62b7e9a1867e225b65c1 700 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 288 309 8.7E-67 T 23-04-2016 RPE_RS12715 6b1f51014f9e62b7e9a1867e225b65c1 700 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 378 390 8.7E-67 T 23-04-2016 RPE_RS12715 6b1f51014f9e62b7e9a1867e225b65c1 700 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 310 336 8.7E-67 T 23-04-2016 RPE_RS12715 6b1f51014f9e62b7e9a1867e225b65c1 700 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 166 186 8.7E-67 T 23-04-2016 RPE_RS24580 84ec9268fb007f2467860b44f02804a5 218 Gene3D G3DSA:3.30.1060.10 10 201 3.9E-79 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 RPE_RS24580 84ec9268fb007f2467860b44f02804a5 218 PANTHER PTHR10173 1 205 7.5E-108 T 23-04-2016 IPR028427 Peptide methionine sulfoxide reductase GO:0006979|GO:0016671|GO:0030091 RPE_RS24580 84ec9268fb007f2467860b44f02804a5 218 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 45 207 36.967 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 RPE_RS24580 84ec9268fb007f2467860b44f02804a5 218 PANTHER PTHR10173:SF36 1 205 7.5E-108 T 23-04-2016 RPE_RS24580 84ec9268fb007f2467860b44f02804a5 218 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 46 201 2.7E-63 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 RPE_RS24580 84ec9268fb007f2467860b44f02804a5 218 SUPERFAMILY SSF55068 5 211 1.44E-79 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 RPE_RS24580 84ec9268fb007f2467860b44f02804a5 218 Pfam PF01625 Peptide methionine sulfoxide reductase 48 201 1.8E-64 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 RPE_RS01010 003fe2b2cd48ea488c5b922e4e8d8827 250 Pfam PF02390 Putative methyltransferase 76 239 6.9E-40 T 23-04-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 RPE_RS01010 003fe2b2cd48ea488c5b922e4e8d8827 250 SUPERFAMILY SSF53335 70 246 1.69E-24 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS01010 003fe2b2cd48ea488c5b922e4e8d8827 250 PANTHER PTHR23417:SF14 60 248 8.9E-45 T 23-04-2016 RPE_RS01010 003fe2b2cd48ea488c5b922e4e8d8827 250 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 74 247 1.7E-34 T 23-04-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 RPE_RS01010 003fe2b2cd48ea488c5b922e4e8d8827 250 PANTHER PTHR23417 60 248 8.9E-45 T 23-04-2016 RPE_RS01010 003fe2b2cd48ea488c5b922e4e8d8827 250 Gene3D G3DSA:3.40.50.150 77 196 1.3E-8 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS01010 003fe2b2cd48ea488c5b922e4e8d8827 250 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 31 248 25.353 T 23-04-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 RPE_RS00340 7699b724c1c9cd2487a1e9d189db4c7f 220 PANTHER PTHR18895 24 194 1.9E-22 T 23-04-2016 RPE_RS00340 7699b724c1c9cd2487a1e9d189db4c7f 220 Gene3D G3DSA:3.40.50.150 44 191 1.3E-27 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS00340 7699b724c1c9cd2487a1e9d189db4c7f 220 PANTHER PTHR18895:SF3 24 194 1.9E-22 T 23-04-2016 RPE_RS00340 7699b724c1c9cd2487a1e9d189db4c7f 220 SUPERFAMILY SSF53335 35 186 4.03E-19 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS00340 7699b724c1c9cd2487a1e9d189db4c7f 220 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 79 131 9.6E-10 T 23-04-2016 RPE_RS10985 7442865e6fdfbe4b24333cedeba7a1f9 131 Pfam PF10116 Protein required for attachment to host cells 9 128 2.8E-24 T 23-04-2016 IPR019291 Host attachment protein RPE_RS09915 5ff01ca5bb023b3ccc2fc3cb0e180c27 100 PANTHER PTHR11941 20 88 2.5E-18 T 23-04-2016 RPE_RS09915 5ff01ca5bb023b3ccc2fc3cb0e180c27 100 SUPERFAMILY SSF52096 18 88 1.31E-15 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS09915 5ff01ca5bb023b3ccc2fc3cb0e180c27 100 Gene3D G3DSA:3.90.226.10 19 88 1.7E-16 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS09915 5ff01ca5bb023b3ccc2fc3cb0e180c27 100 Pfam PF00378 Enoyl-CoA hydratase/isomerase 22 88 1.3E-8 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RPE_RS09915 5ff01ca5bb023b3ccc2fc3cb0e180c27 100 PANTHER PTHR11941:SF28 20 88 2.5E-18 T 23-04-2016 RPE_RS24070 1427d2f1d29cb400bd1dfb7f88a8bb2e 174 TIGRFAM TIGR02281 clan_AA_DTGA: clan AA aspartic protease, TIGR02281 family 54 174 4.0E-43 T 23-04-2016 IPR011969 Clan AA aspartic peptidase, C-terminal RPE_RS24070 1427d2f1d29cb400bd1dfb7f88a8bb2e 174 Pfam PF13975 gag-polyprotein putative aspartyl protease 68 159 9.3E-24 T 23-04-2016 RPE_RS24070 1427d2f1d29cb400bd1dfb7f88a8bb2e 174 PANTHER PTHR41535:SF1 1 174 1.4E-40 T 23-04-2016 RPE_RS24070 1427d2f1d29cb400bd1dfb7f88a8bb2e 174 SUPERFAMILY SSF50630 57 161 3.26E-17 T 23-04-2016 IPR021109 Aspartic peptidase domain RPE_RS24070 1427d2f1d29cb400bd1dfb7f88a8bb2e 174 PANTHER PTHR41535 1 174 1.4E-40 T 23-04-2016 RPE_RS24070 1427d2f1d29cb400bd1dfb7f88a8bb2e 174 ProSitePatterns PS00141 Eukaryotic and viral aspartyl proteases active site. 78 89 - T 23-04-2016 IPR001969 Aspartic peptidase, active site GO:0004190|GO:0006508 RPE_RS00165 b422b1099b2b9ce47b1dbf387d80e1be 445 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 129 140 - T 23-04-2016 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RPE_RS00165 b422b1099b2b9ce47b1dbf387d80e1be 445 SUPERFAMILY SSF52402 4 185 3.75E-32 T 23-04-2016 RPE_RS00165 b422b1099b2b9ce47b1dbf387d80e1be 445 Gene3D G3DSA:1.10.287.400 377 441 3.9E-33 T 23-04-2016 IPR024073 Argininosuccinate synthetase mutimerisation domain, C-terminal tail GO:0042803 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RPE_RS00165 b422b1099b2b9ce47b1dbf387d80e1be 445 PANTHER PTHR11587 1 426 1.9E-172 T 23-04-2016 RPE_RS00165 b422b1099b2b9ce47b1dbf387d80e1be 445 Pfam PF00764 Arginosuccinate synthase 16 405 3.9E-58 T 23-04-2016 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RPE_RS00165 b422b1099b2b9ce47b1dbf387d80e1be 445 Gene3D G3DSA:3.90.1260.10 175 373 6.9E-62 T 23-04-2016 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RPE_RS00165 b422b1099b2b9ce47b1dbf387d80e1be 445 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 17 25 - T 23-04-2016 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RPE_RS00165 b422b1099b2b9ce47b1dbf387d80e1be 445 Hamap MF_00581 Argininosuccinate synthase [argG]. 1 444 68.266 T 23-04-2016 IPR023437 Argininosuccinate synthase, type 2 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RPE_RS00165 b422b1099b2b9ce47b1dbf387d80e1be 445 PANTHER PTHR11587:SF2 1 426 1.9E-172 T 23-04-2016 RPE_RS00165 b422b1099b2b9ce47b1dbf387d80e1be 445 Gene3D G3DSA:3.40.50.620 4 174 1.7E-44 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS00165 b422b1099b2b9ce47b1dbf387d80e1be 445 SUPERFAMILY SSF69864 190 442 3.66E-75 T 23-04-2016 RPE_RS00165 b422b1099b2b9ce47b1dbf387d80e1be 445 TIGRFAM TIGR00032 argG: argininosuccinate synthase 14 420 9.5E-157 T 23-04-2016 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RPE_RS16305 299daac01987a64fc971381248677df6 139 PIRSF PIRSF018267 1 136 8.0E-54 T 23-04-2016 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 RPE_RS16305 299daac01987a64fc971381248677df6 139 TIGRFAM TIGR00632 vsr: DNA mismatch endonuclease Vsr 1 119 1.9E-42 T 23-04-2016 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 RPE_RS16305 299daac01987a64fc971381248677df6 139 SUPERFAMILY SSF52980 2 135 3.59E-52 T 23-04-2016 IPR011335 Restriction endonuclease type II-like RPE_RS16305 299daac01987a64fc971381248677df6 139 Gene3D G3DSA:3.40.960.10 21 124 4.5E-47 T 23-04-2016 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 RPE_RS16305 299daac01987a64fc971381248677df6 139 Pfam PF03852 DNA mismatch endonuclease Vsr 3 72 2.2E-28 T 23-04-2016 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 RPE_RS18405 791b80c3f7fcc17b43a9ace468814be5 173 Pfam PF07883 Cupin domain 75 136 7.2E-9 T 23-04-2016 IPR013096 Cupin 2, conserved barrel RPE_RS18405 791b80c3f7fcc17b43a9ace468814be5 173 SUPERFAMILY SSF51182 36 160 4.65E-16 T 23-04-2016 IPR011051 RmlC-like cupin domain RPE_RS18405 791b80c3f7fcc17b43a9ace468814be5 173 Gene3D G3DSA:2.60.120.10 44 148 1.3E-19 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS23690 ed119d3b7a32c1ac41186003ca079aa7 507 PANTHER PTHR30108:SF1 8 503 2.0E-223 T 23-04-2016 RPE_RS23690 ed119d3b7a32c1ac41186003ca079aa7 507 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 12 464 3.6E-143 T 23-04-2016 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978|UniPathway: UPA00232 RPE_RS23690 ed119d3b7a32c1ac41186003ca079aa7 507 Gene3D G3DSA:1.20.5.570 464 497 7.5E-15 T 23-04-2016 RPE_RS23690 ed119d3b7a32c1ac41186003ca079aa7 507 Gene3D G3DSA:3.40.1670.10 346 463 1.5E-48 T 23-04-2016 RPE_RS23690 ed119d3b7a32c1ac41186003ca079aa7 507 SUPERFAMILY SSF50475 9 331 1.65E-109 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RPE_RS23690 ed119d3b7a32c1ac41186003ca079aa7 507 SUPERFAMILY SSF143968 332 496 1.31E-62 T 23-04-2016 RPE_RS23690 ed119d3b7a32c1ac41186003ca079aa7 507 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 17 440 2.7E-154 T 23-04-2016 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978|UniPathway: UPA00232 RPE_RS23690 ed119d3b7a32c1ac41186003ca079aa7 507 PANTHER PTHR30108 8 503 2.0E-223 T 23-04-2016 RPE_RS07325 2887683a4bdd22c94beca004469ccea3 382 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 24 378 9.7E-107 T 23-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RPE_RS07325 2887683a4bdd22c94beca004469ccea3 382 Gene3D G3DSA:3.90.1150.10 261 380 5.4E-35 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS07325 2887683a4bdd22c94beca004469ccea3 382 PIRSF PIRSF000390 6 382 2.6E-95 T 23-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RPE_RS07325 2887683a4bdd22c94beca004469ccea3 382 SUPERFAMILY SSF53383 21 379 2.15E-98 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS07325 2887683a4bdd22c94beca004469ccea3 382 PANTHER PTHR30244 6 382 1.8E-170 T 23-04-2016 RPE_RS07325 2887683a4bdd22c94beca004469ccea3 382 PANTHER PTHR30244:SF12 6 382 1.8E-170 T 23-04-2016 RPE_RS07325 2887683a4bdd22c94beca004469ccea3 382 Gene3D G3DSA:3.40.640.10 21 258 2.8E-74 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS17750 0f1ee2685e26dbac8a8f4d1628838356 88 PANTHER PTHR30531 9 88 1.2E-29 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RPE_RS17750 0f1ee2685e26dbac8a8f4d1628838356 88 Gene3D G3DSA:3.40.1690.10 8 83 2.2E-25 T 23-04-2016 IPR029025 Type III secretion system substrate exporter, C-terminal RPE_RS17750 0f1ee2685e26dbac8a8f4d1628838356 88 Pfam PF01312 FlhB HrpN YscU SpaS Family 9 80 1.3E-22 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RPE_RS17750 0f1ee2685e26dbac8a8f4d1628838356 88 SUPERFAMILY SSF160544 8 83 3.27E-23 T 23-04-2016 IPR029025 Type III secretion system substrate exporter, C-terminal RPE_RS00705 ad2c6ea8779972e6e40f6160389e3723 320 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 8 318 46.741 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RPE_RS00705 ad2c6ea8779972e6e40f6160389e3723 320 Gene3D G3DSA:3.90.226.10 58 275 1.7E-45 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS00705 ad2c6ea8779972e6e40f6160389e3723 320 SUPERFAMILY SSF52096 8 317 2.3E-90 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS00705 ad2c6ea8779972e6e40f6160389e3723 320 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 6 317 3.7E-118 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RPE_RS00705 ad2c6ea8779972e6e40f6160389e3723 320 PANTHER PTHR22855:SF42 8 317 3.0E-104 T 23-04-2016 RPE_RS00705 ad2c6ea8779972e6e40f6160389e3723 320 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 171 184 1.3E-38 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RPE_RS00705 ad2c6ea8779972e6e40f6160389e3723 320 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 90 101 1.3E-38 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RPE_RS00705 ad2c6ea8779972e6e40f6160389e3723 320 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 199 208 1.3E-38 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RPE_RS00705 ad2c6ea8779972e6e40f6160389e3723 320 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 155 168 1.3E-38 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RPE_RS00705 ad2c6ea8779972e6e40f6160389e3723 320 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 115 133 1.3E-38 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RPE_RS00705 ad2c6ea8779972e6e40f6160389e3723 320 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 136 152 1.3E-38 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RPE_RS00705 ad2c6ea8779972e6e40f6160389e3723 320 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 8 150 3.1E-56 T 23-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RPE_RS00705 ad2c6ea8779972e6e40f6160389e3723 320 PANTHER PTHR22855 8 317 3.0E-104 T 23-04-2016 RPE_RS08930 8182e2d898e03038e8ea9bd09f33088c 86 Gene3D G3DSA:1.10.1220.10 41 83 5.6E-5 T 23-04-2016 IPR013321 Arc-type ribbon-helix-helix GO:0006355 RPE_RS08930 8182e2d898e03038e8ea9bd09f33088c 86 Pfam PF12441 CopG antitoxin of type II toxin-antitoxin system 3 78 1.1E-27 T 23-04-2016 IPR022148 CopG antitoxin RPE_RS08930 8182e2d898e03038e8ea9bd09f33088c 86 SUPERFAMILY SSF47598 41 83 1.08E-6 T 23-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 RPE_RS17075 32768d054fd5add5212885f5f5e03ea0 584 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 53 271 4.6E-54 T 23-04-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 RPE_RS17075 32768d054fd5add5212885f5f5e03ea0 584 Pfam PF05036 Sporulation related domain 505 582 1.8E-9 T 23-04-2016 IPR007730 Sporulation-related domain GO:0042834 RPE_RS17075 32768d054fd5add5212885f5f5e03ea0 584 Gene3D G3DSA:3.40.710.10 53 286 9.1E-81 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS17075 32768d054fd5add5212885f5f5e03ea0 584 PANTHER PTHR21581 57 287 4.3E-66 T 23-04-2016 RPE_RS17075 32768d054fd5add5212885f5f5e03ea0 584 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 79 90 1.2E-12 T 23-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RPE_RS17075 32768d054fd5add5212885f5f5e03ea0 584 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 132 149 1.2E-12 T 23-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RPE_RS17075 32768d054fd5add5212885f5f5e03ea0 584 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 159 172 1.2E-12 T 23-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RPE_RS17075 32768d054fd5add5212885f5f5e03ea0 584 SUPERFAMILY SSF56601 16 285 9.34E-69 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS04660 7b0d0f7f2a4ce68c58b09f2ec25fad54 205 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 65 87 - T 23-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RPE_RS04660 7b0d0f7f2a4ce68c58b09f2ec25fad54 205 PANTHER PTHR14269 16 200 3.6E-43 T 23-04-2016 RPE_RS04660 7b0d0f7f2a4ce68c58b09f2ec25fad54 205 PIRSF PIRSF000847 11 205 7.0E-46 T 23-04-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 RPE_RS04660 7b0d0f7f2a4ce68c58b09f2ec25fad54 205 Pfam PF01066 CDP-alcohol phosphatidyltransferase 16 87 6.1E-16 T 23-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RPE_RS04660 7b0d0f7f2a4ce68c58b09f2ec25fad54 205 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 15 197 1.2E-43 T 23-04-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 RPE_RS16000 7c8cc4f9e1406ad337eca5ea55e6df8a 391 PANTHER PTHR30011:SF1 10 387 6.5E-197 T 23-04-2016 RPE_RS16000 7c8cc4f9e1406ad337eca5ea55e6df8a 391 SUPERFAMILY SSF51679 11 355 1.24E-94 T 23-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RPE_RS16000 7c8cc4f9e1406ad337eca5ea55e6df8a 391 Pfam PF00296 Luciferase-like monooxygenase 11 331 1.0E-87 T 23-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RPE_RS16000 7c8cc4f9e1406ad337eca5ea55e6df8a 391 TIGRFAM TIGR03565 alk_sulf_monoox: alkanesulfonate monooxygenase, FMNH(2)-dependent 10 354 6.7E-190 T 23-04-2016 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 RPE_RS16000 7c8cc4f9e1406ad337eca5ea55e6df8a 391 Gene3D G3DSA:3.20.20.30 11 259 1.4E-100 T 23-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RPE_RS16000 7c8cc4f9e1406ad337eca5ea55e6df8a 391 Gene3D G3DSA:3.20.20.30 293 355 1.4E-100 T 23-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RPE_RS16000 7c8cc4f9e1406ad337eca5ea55e6df8a 391 PANTHER PTHR30011 10 387 6.5E-197 T 23-04-2016 RPE_RS16000 7c8cc4f9e1406ad337eca5ea55e6df8a 391 Hamap MF_01229 Alkanesulfonate monooxygenase [ssuD]. 10 387 69.601 T 23-04-2016 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 RPE_RS14075 a324974564a475a9b17d91c6893de3fd 606 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 34 303 2.2E-17 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RPE_RS14075 a324974564a475a9b17d91c6893de3fd 606 Gene3D G3DSA:3.40.50.300 14 325 5.0E-23 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14075 a324974564a475a9b17d91c6893de3fd 606 SUPERFAMILY SSF52540 12 332 2.25E-17 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02655 0140086e68316aacee28a427c40324e3 260 Gene3D G3DSA:3.40.50.300 9 232 5.6E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02655 0140086e68316aacee28a427c40324e3 260 SUPERFAMILY SSF52540 13 224 5.86E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02655 0140086e68316aacee28a427c40324e3 260 Pfam PF00005 ABC transporter 22 171 6.3E-26 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS02655 0140086e68316aacee28a427c40324e3 260 PANTHER PTHR24220:SF558 8 247 1.4E-71 T 23-04-2016 RPE_RS02655 0140086e68316aacee28a427c40324e3 260 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS02655 0140086e68316aacee28a427c40324e3 260 SMART SM00382 31 219 9.8E-19 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS02655 0140086e68316aacee28a427c40324e3 260 PANTHER PTHR24220 8 247 1.4E-71 T 23-04-2016 RPE_RS24335 52e14cfa84501d76abb659b5eee41444 192 PANTHER PTHR10815 6 171 6.2E-59 T 23-04-2016 RPE_RS24335 52e14cfa84501d76abb659b5eee41444 192 Gene3D G3DSA:1.10.10.10 87 170 8.7E-20 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS24335 52e14cfa84501d76abb659b5eee41444 192 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 88 169 6.9E-20 T 23-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 RPE_RS24335 52e14cfa84501d76abb659b5eee41444 192 PANTHER PTHR10815:SF7 6 171 6.2E-59 T 23-04-2016 RPE_RS24335 52e14cfa84501d76abb659b5eee41444 192 SUPERFAMILY SSF46767 87 170 1.01E-19 T 23-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 RPE_RS24335 52e14cfa84501d76abb659b5eee41444 192 Gene3D G3DSA:3.30.160.70 6 82 2.5E-8 T 23-04-2016 RPE_RS24335 52e14cfa84501d76abb659b5eee41444 192 SUPERFAMILY SSF53155 6 83 3.02E-13 T 23-04-2016 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 RPE_RS24335 52e14cfa84501d76abb659b5eee41444 192 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 88 151 5.3E-19 T 23-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 RPE_RS20215 b51671ee0545a7b62c2f0cfd4a401cc6 1231 Gene3D G3DSA:3.40.50.300 664 752 6.7E-10 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS20215 b51671ee0545a7b62c2f0cfd4a401cc6 1231 SUPERFAMILY SSF52540 329 487 1.95E-26 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS20215 b51671ee0545a7b62c2f0cfd4a401cc6 1231 SUPERFAMILY SSF52540 664 752 1.95E-26 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS20215 b51671ee0545a7b62c2f0cfd4a401cc6 1231 SUPERFAMILY SSF52540 567 618 1.95E-26 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS20215 b51671ee0545a7b62c2f0cfd4a401cc6 1231 Pfam PF00270 DEAD/DEAH box helicase 320 462 9.3E-17 T 23-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RPE_RS20215 b51671ee0545a7b62c2f0cfd4a401cc6 1231 SMART SM00487 311 528 1.1E-13 T 23-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RPE_RS20215 b51671ee0545a7b62c2f0cfd4a401cc6 1231 Gene3D G3DSA:3.40.50.300 317 494 3.7E-20 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS21720 72d986db1c833b40ea4fbdf918ce73f3 365 Gene3D G3DSA:3.90.1150.10 262 362 3.1E-20 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS21720 72d986db1c833b40ea4fbdf918ce73f3 365 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 9 360 7.7E-86 T 23-04-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9|UniPathway: UPA00031 RPE_RS21720 72d986db1c833b40ea4fbdf918ce73f3 365 SUPERFAMILY SSF53383 18 362 5.17E-82 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS21720 72d986db1c833b40ea4fbdf918ce73f3 365 PANTHER PTHR11751 4 364 7.6E-101 T 23-04-2016 RPE_RS21720 72d986db1c833b40ea4fbdf918ce73f3 365 Pfam PF00155 Aminotransferase class I and II 29 357 9.1E-52 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RPE_RS21720 72d986db1c833b40ea4fbdf918ce73f3 365 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 5 362 54.611 T 23-04-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9|UniPathway: UPA00031 RPE_RS21720 72d986db1c833b40ea4fbdf918ce73f3 365 Gene3D G3DSA:3.40.640.10 42 261 4.4E-59 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS21720 72d986db1c833b40ea4fbdf918ce73f3 365 PANTHER PTHR11751:SF347 4 364 7.6E-101 T 23-04-2016 RPE_RS09380 5d54e73036fb1b8dfb0ffe1275c9cf29 467 SMART SM00283 93 356 3.0E-47 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS09380 5d54e73036fb1b8dfb0ffe1275c9cf29 467 PANTHER PTHR32089 62 338 5.2E-58 T 23-04-2016 RPE_RS09380 5d54e73036fb1b8dfb0ffe1275c9cf29 467 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 153 340 3.0E-37 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS09380 5d54e73036fb1b8dfb0ffe1275c9cf29 467 Pfam PF13682 Chemoreceptor zinc-binding domain 367 432 4.9E-13 T 23-04-2016 IPR025991 Chemoreceptor zinc-binding domain UniPathway: UPA00599 RPE_RS09380 5d54e73036fb1b8dfb0ffe1275c9cf29 467 SUPERFAMILY SSF58104 99 345 5.1E-59 T 23-04-2016 RPE_RS09380 5d54e73036fb1b8dfb0ffe1275c9cf29 467 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 220 249 8.3E-7 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS09380 5d54e73036fb1b8dfb0ffe1275c9cf29 467 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 107 136 8.3E-7 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS09380 5d54e73036fb1b8dfb0ffe1275c9cf29 467 Gene3D G3DSA:1.10.287.950 109 323 2.4E-48 T 23-04-2016 RPE_RS11175 018d06a4ab3ae3e087fabd28d11cd4a1 368 SUPERFAMILY SSF103501 204 353 7.59E-24 T 23-04-2016 IPR023234 NarG-like domain RPE_RS11175 018d06a4ab3ae3e087fabd28d11cd4a1 368 TIGRFAM TIGR02484 CitB: CitB domain protein 5 365 1.3E-126 T 23-04-2016 IPR012830 Citrate utilization protein B RPE_RS19435 6d51c9b0e7b3750555caca8feafbf65d 215 PANTHER PTHR34071:SF2 5 199 6.6E-54 T 23-04-2016 RPE_RS19435 6d51c9b0e7b3750555caca8feafbf65d 215 Gene3D G3DSA:2.30.110.10 3 183 1.1E-64 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RPE_RS19435 6d51c9b0e7b3750555caca8feafbf65d 215 PANTHER PTHR34071 5 199 6.6E-54 T 23-04-2016 RPE_RS19435 6d51c9b0e7b3750555caca8feafbf65d 215 SUPERFAMILY SSF50475 5 183 1.1E-56 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RPE_RS19435 6d51c9b0e7b3750555caca8feafbf65d 215 Pfam PF12900 Pyridoxamine 5'-phosphate oxidase 21 163 7.9E-41 T 23-04-2016 IPR024747 Pyridoxamine 5'-phosphate oxidase-related RPE_RS07290 ade6efb95e2c1b54a42b80d27382e8a8 314 PANTHER PTHR30160 4 293 1.4E-74 T 23-04-2016 RPE_RS07290 ade6efb95e2c1b54a42b80d27382e8a8 314 Gene3D G3DSA:3.40.50.2000 168 295 9.1E-32 T 23-04-2016 RPE_RS07290 ade6efb95e2c1b54a42b80d27382e8a8 314 PANTHER PTHR30160:SF8 4 293 1.4E-74 T 23-04-2016 RPE_RS07290 ade6efb95e2c1b54a42b80d27382e8a8 314 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 79 302 1.1E-46 T 23-04-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 RPE_RS07290 ade6efb95e2c1b54a42b80d27382e8a8 314 Gene3D G3DSA:3.40.50.2000 4 155 1.9E-28 T 23-04-2016 RPE_RS07290 ade6efb95e2c1b54a42b80d27382e8a8 314 SUPERFAMILY SSF53756 4 313 5.96E-64 T 23-04-2016 RPE_RS07290 ade6efb95e2c1b54a42b80d27382e8a8 314 TIGRFAM TIGR02193 heptsyl_trn_I: lipopolysaccharide heptosyltransferase I 4 313 1.0E-112 T 23-04-2016 IPR011908 Lipopolysaccharide heptosyltransferase I GO:0008920|GO:0009244 KEGG: 00231+2.-.-.-|UniPathway: UPA00958 RPE_RS08895 95e2a7041d3a9d42e41a4ded374847fd 262 PANTHER PTHR30406:SF6 1 261 2.1E-149 T 23-04-2016 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 RPE_RS08895 95e2a7041d3a9d42e41a4ded374847fd 262 Gene3D G3DSA:1.10.3720.10 4 255 7.6E-50 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS08895 95e2a7041d3a9d42e41a4ded374847fd 262 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 64 257 6.3E-24 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS08895 95e2a7041d3a9d42e41a4ded374847fd 262 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 1 255 1.9E-114 T 23-04-2016 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 RPE_RS08895 95e2a7041d3a9d42e41a4ded374847fd 262 SUPERFAMILY SSF161098 3 251 1.31E-53 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS08895 95e2a7041d3a9d42e41a4ded374847fd 262 PANTHER PTHR30406 1 261 2.1E-149 T 23-04-2016 RPE_RS08895 95e2a7041d3a9d42e41a4ded374847fd 262 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 2 252 5.9E-89 T 23-04-2016 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 RPE_RS22595 fbfaf8b343233dc1fe07fc8a2c1780d2 218 Pfam PF04891 NifQ 43 198 1.6E-56 T 23-04-2016 IPR006975 NifQ GO:0009399|GO:0030151 RPE_RS11145 e1225d1a805d572b4b8a354db76012a6 407 Gene3D G3DSA:3.40.1010.10 10 114 9.7E-25 T 23-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 RPE_RS11145 e1225d1a805d572b4b8a354db76012a6 407 TIGRFAM TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit 238 359 1.1E-30 T 23-04-2016 IPR014008 Cobalamin biosynthesis, precorrin-6Y methyltransferase, CbiT subunit GO:0008276|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.196|MetaCyc: PWY-2201|MetaCyc: PWY-7377|UniPathway: UPA00148 RPE_RS11145 e1225d1a805d572b4b8a354db76012a6 407 SUPERFAMILY SSF53790 11 211 5.89E-41 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RPE_RS11145 e1225d1a805d572b4b8a354db76012a6 407 Gene3D G3DSA:3.40.50.150 235 380 1.8E-19 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS11145 e1225d1a805d572b4b8a354db76012a6 407 PANTHER PTHR14741 229 362 1.1E-44 T 23-04-2016 RPE_RS11145 e1225d1a805d572b4b8a354db76012a6 407 PANTHER PTHR14741:SF34 229 362 1.1E-44 T 23-04-2016 RPE_RS11145 e1225d1a805d572b4b8a354db76012a6 407 TIGRFAM TIGR02467 CbiE: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit 14 200 3.1E-44 T 23-04-2016 IPR012818 Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase GO:0008276|GO:0009236 RPE_RS11145 e1225d1a805d572b4b8a354db76012a6 407 PIRSF PIRSF036428 7 407 1.9E-129 T 23-04-2016 IPR006365 Cobalamin (vitamin B12) biosynthesis CobL/Precorrin-6Y C(5,15)-methyltransferase GO:0008276|GO:0009236 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|KEGG: 00860+2.1.1.132|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00148 RPE_RS11145 e1225d1a805d572b4b8a354db76012a6 407 Gene3D G3DSA:3.30.950.10 115 215 3.1E-22 T 23-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 RPE_RS11145 e1225d1a805d572b4b8a354db76012a6 407 SUPERFAMILY SSF53335 213 384 4.3E-29 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS11145 e1225d1a805d572b4b8a354db76012a6 407 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 12 196 4.8E-21 T 23-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RPE_RS05415 eefccbb5ef257e91af0c0102b71445e8 517 SUPERFAMILY SSF53474 29 515 6.63E-119 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS05415 eefccbb5ef257e91af0c0102b71445e8 517 ProSitePatterns PS00122 Carboxylesterases type-B serine active site. 195 210 - T 23-04-2016 IPR019826 Carboxylesterase type B, active site RPE_RS05415 eefccbb5ef257e91af0c0102b71445e8 517 ProSitePatterns PS00941 Carboxylesterases type-B signature 2. 97 107 - T 23-04-2016 IPR019819 Carboxylesterase type B, conserved site RPE_RS05415 eefccbb5ef257e91af0c0102b71445e8 517 Pfam PF00135 Carboxylesterase family 30 497 2.7E-105 T 23-04-2016 IPR002018 Carboxylesterase, type B RPE_RS05415 eefccbb5ef257e91af0c0102b71445e8 517 Gene3D G3DSA:3.40.50.1820 25 515 2.3E-134 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS05415 eefccbb5ef257e91af0c0102b71445e8 517 PANTHER PTHR11559 11 515 2.1E-143 T 23-04-2016 RPE_RS07070 21a1c4c829a187caba9ba27957a94f58 779 Pfam PF00593 TonB dependent receptor 526 772 4.0E-21 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RPE_RS07070 21a1c4c829a187caba9ba27957a94f58 779 Gene3D G3DSA:2.170.130.10 27 198 2.5E-26 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RPE_RS07070 21a1c4c829a187caba9ba27957a94f58 779 PANTHER PTHR32552:SF19 9 40 2.8E-257 T 23-04-2016 RPE_RS07070 21a1c4c829a187caba9ba27957a94f58 779 PANTHER PTHR32552:SF19 75 779 2.8E-257 T 23-04-2016 RPE_RS07070 21a1c4c829a187caba9ba27957a94f58 779 PANTHER PTHR32552 9 40 2.8E-257 T 23-04-2016 RPE_RS07070 21a1c4c829a187caba9ba27957a94f58 779 PANTHER PTHR32552 75 779 2.8E-257 T 23-04-2016 RPE_RS07070 21a1c4c829a187caba9ba27957a94f58 779 Gene3D G3DSA:2.40.170.20 230 778 1.4E-47 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RPE_RS07070 21a1c4c829a187caba9ba27957a94f58 779 SUPERFAMILY SSF56935 85 779 6.72E-70 T 23-04-2016 RPE_RS07070 21a1c4c829a187caba9ba27957a94f58 779 SUPERFAMILY SSF56935 25 43 6.72E-70 T 23-04-2016 RPE_RS07070 21a1c4c829a187caba9ba27957a94f58 779 Pfam PF07715 TonB-dependent Receptor Plug Domain 90 191 1.0E-17 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RPE_RS08040 06039ca4502c2ad87cc08fca21f43116 688 PANTHER PTHR11757:SF13 12 686 2.1E-239 T 23-04-2016 RPE_RS08040 06039ca4502c2ad87cc08fca21f43116 688 Pfam PF00326 Prolyl oligopeptidase family 484 685 2.6E-41 T 23-04-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 RPE_RS08040 06039ca4502c2ad87cc08fca21f43116 688 SUPERFAMILY SSF50993 13 424 2.43E-40 T 23-04-2016 RPE_RS08040 06039ca4502c2ad87cc08fca21f43116 688 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 545 565 4.5E-41 T 23-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RPE_RS08040 06039ca4502c2ad87cc08fca21f43116 688 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 515 534 4.5E-41 T 23-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RPE_RS08040 06039ca4502c2ad87cc08fca21f43116 688 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 619 641 4.5E-41 T 23-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RPE_RS08040 06039ca4502c2ad87cc08fca21f43116 688 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 600 615 4.5E-41 T 23-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RPE_RS08040 06039ca4502c2ad87cc08fca21f43116 688 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 487 511 4.5E-41 T 23-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RPE_RS08040 06039ca4502c2ad87cc08fca21f43116 688 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 460 478 4.5E-41 T 23-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RPE_RS08040 06039ca4502c2ad87cc08fca21f43116 688 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 12 230 6.5E-26 T 23-04-2016 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 RPE_RS08040 06039ca4502c2ad87cc08fca21f43116 688 SUPERFAMILY SSF53474 429 683 9.8E-44 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS08040 06039ca4502c2ad87cc08fca21f43116 688 Gene3D G3DSA:3.40.50.1820 397 684 9.1E-80 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS08040 06039ca4502c2ad87cc08fca21f43116 688 PANTHER PTHR11757 12 686 2.1E-239 T 23-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RPE_RS08040 06039ca4502c2ad87cc08fca21f43116 688 Gene3D G3DSA:2.130.10.120 87 396 1.5E-12 T 23-04-2016 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 RPE_RS00485 758a3d28b5da3f7ddc3c62e09f754766 237 PANTHER PTHR35011 5 198 2.4E-17 T 23-04-2016 RPE_RS00485 758a3d28b5da3f7ddc3c62e09f754766 237 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 43 176 3.1E-24 T 23-04-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component RPE_RS01575 2ec2d3ac00a85c5317f9a5e3694d01e5 59 Gene3D G3DSA:1.20.5.100 8 38 6.8E-4 T 23-04-2016 RPE_RS01575 2ec2d3ac00a85c5317f9a5e3694d01e5 59 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 1 46 2.2E-16 T 23-04-2016 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 RPE_RS01575 2ec2d3ac00a85c5317f9a5e3694d01e5 59 Pfam PF04995 Heme exporter protein D (CcmD) 4 46 3.8E-14 T 23-04-2016 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 RPE_RS13220 03b7b6d9b9c05556b8f4c41a411972f3 251 Gene3D G3DSA:3.30.1150.10 167 231 1.1E-8 T 23-04-2016 RPE_RS13220 03b7b6d9b9c05556b8f4c41a411972f3 251 SMART SM00965 75 126 3.2E-8 T 23-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 RPE_RS13220 03b7b6d9b9c05556b8f4c41a411972f3 251 SUPERFAMILY SSF74653 137 224 1.2E-10 T 23-04-2016 RPE_RS13220 03b7b6d9b9c05556b8f4c41a411972f3 251 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 168 230 1.3E-7 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 RPE_RS05825 d7f1325f903161b3f2c233b66c08f0da 283 Pfam PF01618 MotA/TolQ/ExbB proton channel family 113 212 4.4E-10 T 23-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 RPE_RS05825 d7f1325f903161b3f2c233b66c08f0da 283 PANTHER PTHR30433 1 269 6.3E-132 T 23-04-2016 RPE_RS05825 d7f1325f903161b3f2c233b66c08f0da 283 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 185 202 - T 23-04-2016 IPR000540 Flagellar motor protein MotA, conserved site RPE_RS05825 d7f1325f903161b3f2c233b66c08f0da 283 TIGRFAM TIGR03818 MotA1: flagellar motor stator protein MotA 1 259 5.6E-97 T 23-04-2016 IPR022522 Flagellar motor stator, MotA RPE_RS05825 d7f1325f903161b3f2c233b66c08f0da 283 PANTHER PTHR30433:SF4 1 269 6.3E-132 T 23-04-2016 IPR022522 Flagellar motor stator, MotA RPE_RS21105 b0c537df31d2204c0873500f8f31c5b1 249 SUPERFAMILY SSF52540 4 246 1.22E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS21105 b0c537df31d2204c0873500f8f31c5b1 249 Pfam PF00005 ABC transporter 21 176 4.0E-24 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS21105 b0c537df31d2204c0873500f8f31c5b1 249 PANTHER PTHR24220:SF358 6 248 2.3E-95 T 23-04-2016 RPE_RS21105 b0c537df31d2204c0873500f8f31c5b1 249 Gene3D G3DSA:3.40.50.300 3 245 4.0E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS21105 b0c537df31d2204c0873500f8f31c5b1 249 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 223 245 2.9E-12 T 23-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RPE_RS21105 b0c537df31d2204c0873500f8f31c5b1 249 PANTHER PTHR24220 6 248 2.3E-95 T 23-04-2016 RPE_RS21105 b0c537df31d2204c0873500f8f31c5b1 249 SMART SM00382 29 222 3.0E-4 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS17975 a941bb5c0bfae031f225166ac9942ad8 396 Gene3D G3DSA:2.40.30.10 302 395 2.0E-45 T 23-04-2016 RPE_RS17975 a941bb5c0bfae031f225166ac9942ad8 396 Pfam PF03144 Elongation factor Tu domain 2 227 296 2.3E-16 T 23-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RPE_RS17975 a941bb5c0bfae031f225166ac9942ad8 396 SUPERFAMILY SSF50465 304 396 4.03E-35 T 23-04-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RPE_RS17975 a941bb5c0bfae031f225166ac9942ad8 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 14 150 5.5E-14 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RPE_RS17975 a941bb5c0bfae031f225166ac9942ad8 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 60.377 T 23-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 RPE_RS17975 a941bb5c0bfae031f225166ac9942ad8 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 1.3E-57 T 23-04-2016 RPE_RS17975 a941bb5c0bfae031f225166ac9942ad8 396 PANTHER PTHR23115:SF112 1 395 4.6E-254 T 23-04-2016 RPE_RS17975 a941bb5c0bfae031f225166ac9942ad8 396 PRINTS PR00315 GTP-binding elongation factor signature 78 88 4.4E-23 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS17975 a941bb5c0bfae031f225166ac9942ad8 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 4.4E-23 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS17975 a941bb5c0bfae031f225166ac9942ad8 396 PRINTS PR00315 GTP-binding elongation factor signature 131 140 4.4E-23 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS17975 a941bb5c0bfae031f225166ac9942ad8 396 PRINTS PR00315 GTP-binding elongation factor signature 58 66 4.4E-23 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS17975 a941bb5c0bfae031f225166ac9942ad8 396 PRINTS PR00315 GTP-binding elongation factor signature 94 105 4.4E-23 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS17975 a941bb5c0bfae031f225166ac9942ad8 396 Pfam PF03143 Elongation factor Tu C-terminal domain 300 394 6.1E-33 T 23-04-2016 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal RPE_RS17975 a941bb5c0bfae031f225166ac9942ad8 396 Gene3D G3DSA:3.40.50.300 5 213 5.7E-69 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS17975 a941bb5c0bfae031f225166ac9942ad8 396 SUPERFAMILY SSF50447 207 303 2.55E-30 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain RPE_RS17975 a941bb5c0bfae031f225166ac9942ad8 396 SUPERFAMILY SSF52540 9 228 4.5E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS17975 a941bb5c0bfae031f225166ac9942ad8 396 PANTHER PTHR23115 1 395 4.6E-254 T 23-04-2016 RPE_RS17975 a941bb5c0bfae031f225166ac9942ad8 396 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 23-04-2016 IPR031157 Tr-type G domain, conserved site RPE_RS17975 a941bb5c0bfae031f225166ac9942ad8 396 Gene3D G3DSA:2.40.30.10 214 300 5.3E-37 T 23-04-2016 RPE_RS17975 a941bb5c0bfae031f225166ac9942ad8 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 396 8.1E-230 T 23-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 RPE_RS18095 a941bb5c0bfae031f225166ac9942ad8 396 Gene3D G3DSA:2.40.30.10 302 395 2.0E-45 T 23-04-2016 RPE_RS18095 a941bb5c0bfae031f225166ac9942ad8 396 Pfam PF03144 Elongation factor Tu domain 2 227 296 2.3E-16 T 23-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RPE_RS18095 a941bb5c0bfae031f225166ac9942ad8 396 SUPERFAMILY SSF50465 304 396 4.03E-35 T 23-04-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RPE_RS18095 a941bb5c0bfae031f225166ac9942ad8 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 14 150 5.5E-14 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RPE_RS18095 a941bb5c0bfae031f225166ac9942ad8 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 60.377 T 23-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 RPE_RS18095 a941bb5c0bfae031f225166ac9942ad8 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 1.3E-57 T 23-04-2016 RPE_RS18095 a941bb5c0bfae031f225166ac9942ad8 396 PANTHER PTHR23115:SF112 1 395 4.6E-254 T 23-04-2016 RPE_RS18095 a941bb5c0bfae031f225166ac9942ad8 396 PRINTS PR00315 GTP-binding elongation factor signature 78 88 4.4E-23 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS18095 a941bb5c0bfae031f225166ac9942ad8 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 4.4E-23 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS18095 a941bb5c0bfae031f225166ac9942ad8 396 PRINTS PR00315 GTP-binding elongation factor signature 131 140 4.4E-23 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS18095 a941bb5c0bfae031f225166ac9942ad8 396 PRINTS PR00315 GTP-binding elongation factor signature 58 66 4.4E-23 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS18095 a941bb5c0bfae031f225166ac9942ad8 396 PRINTS PR00315 GTP-binding elongation factor signature 94 105 4.4E-23 T 23-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RPE_RS18095 a941bb5c0bfae031f225166ac9942ad8 396 Pfam PF03143 Elongation factor Tu C-terminal domain 300 394 6.1E-33 T 23-04-2016 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal RPE_RS18095 a941bb5c0bfae031f225166ac9942ad8 396 Gene3D G3DSA:3.40.50.300 5 213 5.7E-69 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18095 a941bb5c0bfae031f225166ac9942ad8 396 SUPERFAMILY SSF50447 207 303 2.55E-30 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain RPE_RS18095 a941bb5c0bfae031f225166ac9942ad8 396 SUPERFAMILY SSF52540 9 228 4.5E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18095 a941bb5c0bfae031f225166ac9942ad8 396 PANTHER PTHR23115 1 395 4.6E-254 T 23-04-2016 RPE_RS18095 a941bb5c0bfae031f225166ac9942ad8 396 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 23-04-2016 IPR031157 Tr-type G domain, conserved site RPE_RS18095 a941bb5c0bfae031f225166ac9942ad8 396 Gene3D G3DSA:2.40.30.10 214 300 5.3E-37 T 23-04-2016 RPE_RS18095 a941bb5c0bfae031f225166ac9942ad8 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 396 8.1E-230 T 23-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 RPE_RS18720 2f4aa99ba7cfbacf07ce0a927be251b4 439 PANTHER PTHR30483:SF8 1 422 8.3E-209 T 23-04-2016 RPE_RS18720 2f4aa99ba7cfbacf07ce0a927be251b4 439 Gene3D G3DSA:3.40.50.2300 156 347 1.1E-70 T 23-04-2016 RPE_RS18720 2f4aa99ba7cfbacf07ce0a927be251b4 439 TIGRFAM TIGR03407 urea_ABC_UrtA: urea ABC transporter, urea binding protein 41 406 1.5E-167 T 23-04-2016 IPR017777 ABC transporter, urea, substrate-binding, UrtA RPE_RS18720 2f4aa99ba7cfbacf07ce0a927be251b4 439 SUPERFAMILY SSF53822 40 410 1.63E-85 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RPE_RS18720 2f4aa99ba7cfbacf07ce0a927be251b4 439 Pfam PF13433 Periplasmic binding protein domain 41 408 1.2E-165 T 23-04-2016 RPE_RS18720 2f4aa99ba7cfbacf07ce0a927be251b4 439 PANTHER PTHR30483 1 422 8.3E-209 T 23-04-2016 RPE_RS21110 cf04d2755d9e616871eed8b32fab450e 231 SUPERFAMILY SSF52540 2 223 1.78E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS21110 cf04d2755d9e616871eed8b32fab450e 231 Pfam PF00005 ABC transporter 17 159 1.3E-26 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS21110 cf04d2755d9e616871eed8b32fab450e 231 SMART SM00382 26 210 2.8E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS21110 cf04d2755d9e616871eed8b32fab450e 231 PANTHER PTHR24220:SF568 3 231 3.1E-94 T 23-04-2016 RPE_RS21110 cf04d2755d9e616871eed8b32fab450e 231 PANTHER PTHR24220 3 231 3.1E-94 T 23-04-2016 RPE_RS21110 cf04d2755d9e616871eed8b32fab450e 231 Gene3D G3DSA:3.40.50.300 1 223 1.3E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS21110 cf04d2755d9e616871eed8b32fab450e 231 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS24815 0dc6557b3e4be1b81024c5e90c2b2e9c 907 PANTHER PTHR33840:SF4 2 436 6.1E-82 T 23-04-2016 RPE_RS24815 0dc6557b3e4be1b81024c5e90c2b2e9c 907 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 7 279 2.9E-66 T 23-04-2016 IPR018712 Domain of unknown function DUF2235 RPE_RS24815 0dc6557b3e4be1b81024c5e90c2b2e9c 907 PANTHER PTHR33840 2 436 6.1E-82 T 23-04-2016 RPE_RS20355 e7236812df87a2d4da1bded7fc10a7c8 340 PIRSF PIRSF002825 1 340 2.3E-90 T 23-04-2016 IPR026045 Ferric binding protein RPE_RS20355 e7236812df87a2d4da1bded7fc10a7c8 340 SUPERFAMILY SSF53850 27 337 1.31E-80 T 23-04-2016 RPE_RS20355 e7236812df87a2d4da1bded7fc10a7c8 340 Pfam PF13343 Bacterial extracellular solute-binding protein 74 301 1.3E-25 T 23-04-2016 RPE_RS20355 e7236812df87a2d4da1bded7fc10a7c8 340 PANTHER PTHR30006 9 336 6.1E-130 T 23-04-2016 RPE_RS20355 e7236812df87a2d4da1bded7fc10a7c8 340 Gene3D G3DSA:3.40.190.10 127 270 7.6E-50 T 23-04-2016 RPE_RS20355 e7236812df87a2d4da1bded7fc10a7c8 340 Gene3D G3DSA:3.40.190.10 271 325 2.8E-33 T 23-04-2016 RPE_RS20355 e7236812df87a2d4da1bded7fc10a7c8 340 Gene3D G3DSA:3.40.190.10 1 123 2.8E-33 T 23-04-2016 RPE_RS20355 e7236812df87a2d4da1bded7fc10a7c8 340 PANTHER PTHR30006:SF4 9 336 6.1E-130 T 23-04-2016 RPE_RS10880 c170d8fe63e562f00862c27a20f90861 533 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 45 175 3.9E-25 T 23-04-2016 RPE_RS10880 c170d8fe63e562f00862c27a20f90861 533 PANTHER PTHR23337:SF3 46 117 6.5E-13 T 23-04-2016 RPE_RS10880 c170d8fe63e562f00862c27a20f90861 533 SUPERFAMILY SSF55874 44 192 1.31E-16 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS10880 c170d8fe63e562f00862c27a20f90861 533 Gene3D G3DSA:3.30.565.10 41 197 2.0E-23 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS10880 c170d8fe63e562f00862c27a20f90861 533 PANTHER PTHR23337 46 117 6.5E-13 T 23-04-2016 RPE_RS16035 bd4a9c21865396df2c3754277e022d90 198 SUPERFAMILY SSF52518 3 170 3.58E-37 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS16035 bd4a9c21865396df2c3754277e022d90 198 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 168 7.7E-42 T 23-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RPE_RS16035 bd4a9c21865396df2c3754277e022d90 198 PANTHER PTHR18968 4 167 1.7E-36 T 23-04-2016 RPE_RS16035 bd4a9c21865396df2c3754277e022d90 198 Gene3D G3DSA:3.40.50.970 2 170 4.3E-45 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS09105 e114113f2d839e8bc4bf487a66a03682 789 Gene3D G3DSA:1.20.1640.10 195 395 5.6E-20 T 23-04-2016 RPE_RS09105 e114113f2d839e8bc4bf487a66a03682 789 Gene3D G3DSA:1.20.1640.10 570 771 2.3E-26 T 23-04-2016 RPE_RS09105 e114113f2d839e8bc4bf487a66a03682 789 SUPERFAMILY SSF82866 558 771 1.44E-25 T 23-04-2016 RPE_RS09105 e114113f2d839e8bc4bf487a66a03682 789 Pfam PF03176 MMPL family 458 771 2.8E-14 T 23-04-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 RPE_RS09105 e114113f2d839e8bc4bf487a66a03682 789 Pfam PF03176 MMPL family 69 426 1.0E-18 T 23-04-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 RPE_RS09105 e114113f2d839e8bc4bf487a66a03682 789 PANTHER PTHR33406 134 764 1.0E-133 T 23-04-2016 RPE_RS09105 e114113f2d839e8bc4bf487a66a03682 789 PANTHER PTHR33406 15 116 1.0E-133 T 23-04-2016 RPE_RS09105 e114113f2d839e8bc4bf487a66a03682 789 PANTHER PTHR33406:SF2 134 764 1.0E-133 T 23-04-2016 RPE_RS09105 e114113f2d839e8bc4bf487a66a03682 789 PANTHER PTHR33406:SF2 15 116 1.0E-133 T 23-04-2016 RPE_RS09105 e114113f2d839e8bc4bf487a66a03682 789 SUPERFAMILY SSF82866 196 391 2.62E-23 T 23-04-2016 RPE_RS03555 a49b6c65ddbea1f9f88477f5b5981655 232 SUPERFAMILY SSF51182 1 231 9.36E-72 T 23-04-2016 IPR011051 RmlC-like cupin domain RPE_RS03555 a49b6c65ddbea1f9f88477f5b5981655 232 PIRSF PIRSF006232 3 232 1.6E-51 T 23-04-2016 IPR012093 Pirin RPE_RS03555 a49b6c65ddbea1f9f88477f5b5981655 232 Pfam PF02678 Pirin 12 118 6.7E-36 T 23-04-2016 IPR003829 Pirin, N-terminal domain RPE_RS03555 a49b6c65ddbea1f9f88477f5b5981655 232 PANTHER PTHR13903:SF7 1 230 8.2E-108 T 23-04-2016 RPE_RS03555 a49b6c65ddbea1f9f88477f5b5981655 232 Gene3D G3DSA:2.60.120.10 6 231 1.7E-64 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS03555 a49b6c65ddbea1f9f88477f5b5981655 232 PANTHER PTHR13903 1 230 8.2E-108 T 23-04-2016 IPR012093 Pirin RPE_RS18380 077675003bd0ca777c56a33409bc14a5 119 SUPERFAMILY SSF49503 21 109 4.29E-11 T 23-04-2016 IPR008972 Cupredoxin RPE_RS18380 077675003bd0ca777c56a33409bc14a5 119 Pfam PF13473 Cupredoxin-like domain 15 117 1.3E-27 T 23-04-2016 IPR028096 EfeO-type cupredoxin-like domain RPE_RS08405 ba7a9f1035d26c7ec85372b68ee20516 388 PANTHER PTHR30294:SF12 18 385 4.2E-115 T 23-04-2016 RPE_RS08405 ba7a9f1035d26c7ec85372b68ee20516 388 Pfam PF12698 ABC-2 family transporter protein 44 379 8.0E-45 T 23-04-2016 RPE_RS08405 ba7a9f1035d26c7ec85372b68ee20516 388 PANTHER PTHR30294 18 385 4.2E-115 T 23-04-2016 RPE_RS14495 e58020862efabf1238bed26d74ed31af 274 TIGRFAM TIGR00444 mazG: MazG family protein 13 268 1.3E-88 T 23-04-2016 IPR011551 NTP pyrophosphohydrolase MazG RPE_RS14495 e58020862efabf1238bed26d74ed31af 274 SUPERFAMILY SSF101386 5 106 2.62E-24 T 23-04-2016 RPE_RS14495 e58020862efabf1238bed26d74ed31af 274 Gene3D G3DSA:1.10.287.1080 24 76 3.5E-8 T 23-04-2016 RPE_RS14495 e58020862efabf1238bed26d74ed31af 274 Gene3D G3DSA:1.10.287.1080 151 230 1.8E-13 T 23-04-2016 RPE_RS14495 e58020862efabf1238bed26d74ed31af 274 SUPERFAMILY SSF101386 153 247 9.35E-25 T 23-04-2016 RPE_RS14495 e58020862efabf1238bed26d74ed31af 274 PANTHER PTHR30522:SF0 5 274 8.8E-118 T 23-04-2016 IPR011551 NTP pyrophosphohydrolase MazG RPE_RS14495 e58020862efabf1238bed26d74ed31af 274 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 30 103 1.0E-27 T 23-04-2016 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core RPE_RS14495 e58020862efabf1238bed26d74ed31af 274 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 175 237 2.0E-8 T 23-04-2016 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core RPE_RS14495 e58020862efabf1238bed26d74ed31af 274 PANTHER PTHR30522 5 274 8.8E-118 T 23-04-2016 RPE_RS23325 faa237ec567f310271b323be5a8ce326 356 SUPERFAMILY SSF111369 119 179 1.57E-5 T 23-04-2016 RPE_RS23325 faa237ec567f310271b323be5a8ce326 356 PANTHER PTHR30438 9 356 5.9E-121 T 23-04-2016 RPE_RS23325 faa237ec567f310271b323be5a8ce326 356 Pfam PF13533 Biotin-lipoyl like 49 95 4.3E-11 T 23-04-2016 RPE_RS23325 faa237ec567f310271b323be5a8ce326 356 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 328 343 8.2E-5 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RPE_RS23325 faa237ec567f310271b323be5a8ce326 356 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 59 79 8.2E-5 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RPE_RS23325 faa237ec567f310271b323be5a8ce326 356 Gene3D G3DSA:2.40.50.100 212 244 4.7E-12 T 23-04-2016 RPE_RS23325 faa237ec567f310271b323be5a8ce326 356 Gene3D G3DSA:2.40.50.100 49 81 4.7E-12 T 23-04-2016 RPE_RS23325 faa237ec567f310271b323be5a8ce326 356 SUPERFAMILY SSF111369 42 129 1.7E-9 T 23-04-2016 RPE_RS23325 faa237ec567f310271b323be5a8ce326 356 PANTHER PTHR30438:SF1 9 356 5.9E-121 T 23-04-2016 RPE_RS23325 faa237ec567f310271b323be5a8ce326 356 SUPERFAMILY SSF111369 186 288 5.49E-6 T 23-04-2016 RPE_RS23325 faa237ec567f310271b323be5a8ce326 356 Pfam PF13437 HlyD family secretion protein 214 299 2.3E-11 T 23-04-2016 RPE_RS18320 45a5f0be9d221449e6528078b0376d6f 77 Gene3D G3DSA:3.40.30.10 2 76 9.8E-27 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS18320 45a5f0be9d221449e6528078b0376d6f 77 SUPERFAMILY SSF52833 2 76 2.83E-18 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS18320 45a5f0be9d221449e6528078b0376d6f 77 PANTHER PTHR36450 2 76 1.4E-24 T 23-04-2016 RPE_RS18320 45a5f0be9d221449e6528078b0376d6f 77 PANTHER PTHR36450:SF1 2 76 1.4E-24 T 23-04-2016 RPE_RS18320 45a5f0be9d221449e6528078b0376d6f 77 PIRSF PIRSF037031 1 77 2.4E-28 T 23-04-2016 IPR005243 Redox-active disulphide protein 2 RPE_RS18320 45a5f0be9d221449e6528078b0376d6f 77 Pfam PF13192 Thioredoxin domain 3 76 1.4E-23 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS15830 e6094bf9db023d92bc0f4a67d3a1d25a 270 SUPERFAMILY SSF52540 4 233 1.21E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15830 e6094bf9db023d92bc0f4a67d3a1d25a 270 PANTHER PTHR24220:SF558 6 245 3.6E-82 T 23-04-2016 RPE_RS15830 e6094bf9db023d92bc0f4a67d3a1d25a 270 Gene3D G3DSA:3.40.50.300 7 240 1.1E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15830 e6094bf9db023d92bc0f4a67d3a1d25a 270 SMART SM00382 29 218 5.4E-16 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS15830 e6094bf9db023d92bc0f4a67d3a1d25a 270 PANTHER PTHR24220 6 245 3.6E-82 T 23-04-2016 RPE_RS15830 e6094bf9db023d92bc0f4a67d3a1d25a 270 Pfam PF00005 ABC transporter 21 171 1.9E-26 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS16700 7aabe3646e803e638e054521f84e6193 535 PANTHER PTHR33908 33 472 6.9E-50 T 23-04-2016 RPE_RS16700 7aabe3646e803e638e054521f84e6193 535 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 93 253 1.2E-25 T 23-04-2016 RPE_RS16700 7aabe3646e803e638e054521f84e6193 535 PANTHER PTHR33908:SF2 33 472 6.9E-50 T 23-04-2016 RPE_RS00285 266ab26efda66a5adaa5742983a87ae7 560 Gene3D G3DSA:1.20.1250.20 230 409 1.4E-13 T 23-04-2016 RPE_RS00285 266ab26efda66a5adaa5742983a87ae7 560 Gene3D G3DSA:1.20.1250.20 21 211 1.3E-18 T 23-04-2016 RPE_RS00285 266ab26efda66a5adaa5742983a87ae7 560 PANTHER PTHR23513:SF7 4 435 4.6E-132 T 23-04-2016 RPE_RS00285 266ab26efda66a5adaa5742983a87ae7 560 SUPERFAMILY SSF103473 21 409 8.63E-47 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS00285 266ab26efda66a5adaa5742983a87ae7 560 PANTHER PTHR23513 4 435 4.6E-132 T 23-04-2016 RPE_RS00285 266ab26efda66a5adaa5742983a87ae7 560 Pfam PF05977 Transmembrane secretion effector 16 532 1.2E-174 T 23-04-2016 IPR010290 Transmembrane secretion effector RPE_RS04240 fb1dfc4ced95e05739cfe4e7918f3f4f 399 Pfam PF04055 Radical SAM superfamily 42 195 2.4E-22 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RPE_RS04240 fb1dfc4ced95e05739cfe4e7918f3f4f 399 PANTHER PTHR11228 27 369 1.6E-122 T 23-04-2016 RPE_RS04240 fb1dfc4ced95e05739cfe4e7918f3f4f 399 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 42 53 - T 23-04-2016 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 RPE_RS04240 fb1dfc4ced95e05739cfe4e7918f3f4f 399 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 268 359 1.9E-9 T 23-04-2016 IPR023885 4Fe4S-binding SPASM domain RPE_RS04240 fb1dfc4ced95e05739cfe4e7918f3f4f 399 SMART SM00729 36 239 0.0018 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RPE_RS04240 fb1dfc4ced95e05739cfe4e7918f3f4f 399 Pfam PF13353 4Fe-4S single cluster domain 42 117 2.8E-7 T 23-04-2016 RPE_RS04240 fb1dfc4ced95e05739cfe4e7918f3f4f 399 PANTHER PTHR11228:SF32 27 369 1.6E-122 T 23-04-2016 RPE_RS04240 fb1dfc4ced95e05739cfe4e7918f3f4f 399 Gene3D G3DSA:3.20.20.70 35 350 2.6E-68 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS04240 fb1dfc4ced95e05739cfe4e7918f3f4f 399 Pfam PF13186 Iron-sulfur cluster-binding domain 265 331 9.1E-6 T 23-04-2016 IPR023885 4Fe4S-binding SPASM domain RPE_RS04240 fb1dfc4ced95e05739cfe4e7918f3f4f 399 TIGRFAM TIGR02109 PQQ_syn_pqqE: coenzyme PQQ biosynthesis enzyme PqqE 31 386 1.3E-178 T 23-04-2016 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria GO:0018189|GO:0051539 UniPathway: UPA00539 RPE_RS04240 fb1dfc4ced95e05739cfe4e7918f3f4f 399 Hamap MF_00660 Coenzyme PQQ synthesis protein E [pqqE]. 1 398 182.092 T 23-04-2016 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria GO:0018189|GO:0051539 UniPathway: UPA00539 RPE_RS04240 fb1dfc4ced95e05739cfe4e7918f3f4f 399 SUPERFAMILY SSF102114 35 341 4.32E-69 T 23-04-2016 RPE_RS04240 fb1dfc4ced95e05739cfe4e7918f3f4f 399 PIRSF PIRSF037420 21 381 5.9E-123 T 23-04-2016 IPR017200 Coenzyme PQQ synthesis protein E UniPathway: UPA00539 RPE_RS14455 452d06e9a8e0e3fbe9cc744a56083511 420 SUPERFAMILY SSF53649 87 339 4.74E-24 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 RPE_RS14455 452d06e9a8e0e3fbe9cc744a56083511 420 PANTHER PTHR10342:SF236 217 351 6.0E-17 T 23-04-2016 RPE_RS14455 452d06e9a8e0e3fbe9cc744a56083511 420 Pfam PF00884 Sulfatase 216 302 4.8E-8 T 23-04-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 RPE_RS14455 452d06e9a8e0e3fbe9cc744a56083511 420 PANTHER PTHR10342 217 351 6.0E-17 T 23-04-2016 RPE_RS14455 452d06e9a8e0e3fbe9cc744a56083511 420 PANTHER PTHR10342 369 380 6.0E-17 T 23-04-2016 RPE_RS14455 452d06e9a8e0e3fbe9cc744a56083511 420 Gene3D G3DSA:3.40.720.10 208 321 2.3E-18 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 RPE_RS14455 452d06e9a8e0e3fbe9cc744a56083511 420 PANTHER PTHR10342:SF236 369 380 6.0E-17 T 23-04-2016 RPE_RS16630 870f765452dac49788d9d9c78fe63733 194 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 44 3.9E-22 T 23-04-2016 IPR020070 Ribosomal protein L9, N-terminal RPE_RS16630 870f765452dac49788d9d9c78fe63733 194 SUPERFAMILY SSF55653 57 146 1.57E-21 T 23-04-2016 IPR020069 Ribosomal protein L9, C-terminal RPE_RS16630 870f765452dac49788d9d9c78fe63733 194 Gene3D G3DSA:3.10.430.100 61 146 6.0E-22 T 23-04-2016 IPR020069 Ribosomal protein L9, C-terminal RPE_RS16630 870f765452dac49788d9d9c78fe63733 194 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 145 3.0E-36 T 23-04-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS16630 870f765452dac49788d9d9c78fe63733 194 Gene3D G3DSA:3.40.5.10 1 52 9.6E-25 T 23-04-2016 IPR020070 Ribosomal protein L9, N-terminal RPE_RS16630 870f765452dac49788d9d9c78fe63733 194 PANTHER PTHR21368 1 163 1.9E-47 T 23-04-2016 IPR000244 Ribosomal protein L9 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS16630 870f765452dac49788d9d9c78fe63733 194 Pfam PF03948 Ribosomal protein L9, C-terminal domain 63 145 1.5E-20 T 23-04-2016 IPR020069 Ribosomal protein L9, C-terminal RPE_RS16630 870f765452dac49788d9d9c78fe63733 194 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 147 23.808 T 23-04-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS16630 870f765452dac49788d9d9c78fe63733 194 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 23-04-2016 IPR020070 Ribosomal protein L9, N-terminal RPE_RS16630 870f765452dac49788d9d9c78fe63733 194 SUPERFAMILY SSF55658 1 57 1.41E-18 T 23-04-2016 IPR009027 Ribosomal protein L9/RNase H1, N-terminal RPE_RS10905 b423a1137c7580b93c8d78cc98dcbb37 99 Pfam PF00303 Thymidylate synthase 7 99 2.8E-37 T 23-04-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RPE_RS10905 b423a1137c7580b93c8d78cc98dcbb37 99 SUPERFAMILY SSF55831 7 99 2.49E-40 T 23-04-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RPE_RS10905 b423a1137c7580b93c8d78cc98dcbb37 99 Gene3D G3DSA:3.30.572.10 7 99 4.9E-42 T 23-04-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RPE_RS10905 b423a1137c7580b93c8d78cc98dcbb37 99 PANTHER PTHR11548 10 99 7.1E-63 T 23-04-2016 RPE_RS10905 b423a1137c7580b93c8d78cc98dcbb37 99 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 8 99 1.8E-43 T 23-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 RPE_RS05025 44e2b046a26ba8d64a0d6348f7b49c32 393 PANTHER PTHR30483 16 389 6.9E-132 T 23-04-2016 RPE_RS05025 44e2b046a26ba8d64a0d6348f7b49c32 393 Pfam PF13458 Periplasmic binding protein 34 384 9.7E-59 T 23-04-2016 IPR028081 Leucine-binding protein domain RPE_RS05025 44e2b046a26ba8d64a0d6348f7b49c32 393 SUPERFAMILY SSF53822 34 389 2.39E-80 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RPE_RS05025 44e2b046a26ba8d64a0d6348f7b49c32 393 Gene3D G3DSA:3.40.50.2300 34 230 9.6E-51 T 23-04-2016 RPE_RS05025 44e2b046a26ba8d64a0d6348f7b49c32 393 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 76 94 4.5E-8 T 23-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RPE_RS05025 44e2b046a26ba8d64a0d6348f7b49c32 393 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 264 282 4.5E-8 T 23-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RPE_RS05025 44e2b046a26ba8d64a0d6348f7b49c32 393 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 35 51 4.5E-8 T 23-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RPE_RS05025 44e2b046a26ba8d64a0d6348f7b49c32 393 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 57 73 4.5E-8 T 23-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 RPE_RS05025 44e2b046a26ba8d64a0d6348f7b49c32 393 PANTHER PTHR30483:SF18 16 389 6.9E-132 T 23-04-2016 RPE_RS18945 400bf1efbaaf49a61d30c83e34815ab7 409 Pfam PF13458 Periplasmic binding protein 39 393 2.4E-58 T 23-04-2016 IPR028081 Leucine-binding protein domain RPE_RS18945 400bf1efbaaf49a61d30c83e34815ab7 409 PANTHER PTHR30483 4 406 1.5E-216 T 23-04-2016 RPE_RS18945 400bf1efbaaf49a61d30c83e34815ab7 409 SUPERFAMILY SSF53822 39 400 7.71E-77 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RPE_RS18945 400bf1efbaaf49a61d30c83e34815ab7 409 Gene3D G3DSA:3.40.50.2300 39 237 2.1E-48 T 23-04-2016 RPE_RS18945 400bf1efbaaf49a61d30c83e34815ab7 409 PANTHER PTHR30483:SF11 4 406 1.5E-216 T 23-04-2016 RPE_RS09655 8c2ffe28695176314044905c42e748c1 300 Pfam PF09356 Phage conserved hypothetical protein BR0599 195 277 5.0E-33 T 23-04-2016 IPR018964 Bacteriophage phiJL001, Gp84, C-terminal RPE_RS09655 8c2ffe28695176314044905c42e748c1 300 TIGRFAM TIGR02218 phg_TIGR02218: phage conserved hypothetical protein BR0599 23 291 1.9E-91 T 23-04-2016 IPR011928 Bacteriophage phiJL001, Gp84 RPE_RS09655 8c2ffe28695176314044905c42e748c1 300 Pfam PF09931 Uncharacterized conserved protein (DUF2163) 1 163 1.6E-56 T 23-04-2016 IPR019228 Bacteriophage phiJL001, Gp84, N-terminal RPE_RS14150 5d11709256d6bff5d268389536be3568 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 226 240 1.6E-9 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS14150 5d11709256d6bff5d268389536be3568 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 97 110 1.6E-9 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS14150 5d11709256d6bff5d268389536be3568 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 51 66 1.6E-9 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS14150 5d11709256d6bff5d268389536be3568 292 PANTHER PTHR10992:SF793 28 282 1.1E-69 T 23-04-2016 RPE_RS14150 5d11709256d6bff5d268389536be3568 292 SUPERFAMILY SSF53474 3 277 1.34E-66 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS14150 5d11709256d6bff5d268389536be3568 292 Pfam PF00561 alpha/beta hydrolase fold 28 264 1.4E-27 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS14150 5d11709256d6bff5d268389536be3568 292 Gene3D G3DSA:3.40.50.1820 3 282 2.3E-78 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS14150 5d11709256d6bff5d268389536be3568 292 PANTHER PTHR10992 28 282 1.1E-69 T 23-04-2016 RPE_RS14150 5d11709256d6bff5d268389536be3568 292 PRINTS PR00412 Epoxide hydrolase signature 51 66 1.7E-21 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RPE_RS14150 5d11709256d6bff5d268389536be3568 292 PRINTS PR00412 Epoxide hydrolase signature 257 279 1.7E-21 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RPE_RS14150 5d11709256d6bff5d268389536be3568 292 PRINTS PR00412 Epoxide hydrolase signature 31 49 1.7E-21 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RPE_RS14150 5d11709256d6bff5d268389536be3568 292 PRINTS PR00412 Epoxide hydrolase signature 224 240 1.7E-21 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RPE_RS14150 5d11709256d6bff5d268389536be3568 292 PRINTS PR00412 Epoxide hydrolase signature 97 110 1.7E-21 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RPE_RS19500 64a8c145312f6773a8512ca43ff18705 199 Gene3D G3DSA:1.20.120.20 14 122 6.1E-4 T 23-04-2016 RPE_RS02700 516c39f89d70c2b8f76f2377571a337a 338 PIRSF PIRSF000267 6 338 2.3E-91 T 23-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RPE_RS02700 516c39f89d70c2b8f76f2377571a337a 338 PANTHER PTHR30365:SF4 2 338 2.6E-137 T 23-04-2016 RPE_RS02700 516c39f89d70c2b8f76f2377571a337a 338 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 9 334 1.9E-51 T 23-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RPE_RS02700 516c39f89d70c2b8f76f2377571a337a 338 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 9 327 2.6E-100 T 23-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RPE_RS02700 516c39f89d70c2b8f76f2377571a337a 338 PANTHER PTHR30365 2 338 2.6E-137 T 23-04-2016 RPE_RS03080 6050d915d36094df57cdfcaa8470a579 525 PANTHER PTHR14465:SF0 19 524 3.0E-35 T 23-04-2016 RPE_RS03080 6050d915d36094df57cdfcaa8470a579 525 PANTHER PTHR14465 19 524 3.0E-35 T 23-04-2016 RPE_RS03080 6050d915d36094df57cdfcaa8470a579 525 SUPERFAMILY SSF56059 182 408 2.79E-11 T 23-04-2016 RPE_RS17960 2bdbed13d6768623b32d9ab1397eae05 206 Pfam PF00573 Ribosomal protein L4/L1 family 16 203 2.3E-60 T 23-04-2016 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 RPE_RS17960 2bdbed13d6768623b32d9ab1397eae05 206 SUPERFAMILY SSF52166 1 205 1.83E-71 T 23-04-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 RPE_RS17960 2bdbed13d6768623b32d9ab1397eae05 206 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 8 206 30.846 T 23-04-2016 IPR013005 50S ribosomal protein uL4 RPE_RS17960 2bdbed13d6768623b32d9ab1397eae05 206 PANTHER PTHR10746 1 204 7.0E-88 T 23-04-2016 IPR013005 50S ribosomal protein uL4 RPE_RS17960 2bdbed13d6768623b32d9ab1397eae05 206 Gene3D G3DSA:3.40.1370.10 59 205 2.6E-54 T 23-04-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 RPE_RS17960 2bdbed13d6768623b32d9ab1397eae05 206 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 16 202 1.9E-67 T 23-04-2016 IPR013005 50S ribosomal protein uL4 RPE_RS00985 7832b3f254ccf161f6ee0963600e5c24 138 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 12 128 19.322 T 23-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 RPE_RS00985 7832b3f254ccf161f6ee0963600e5c24 138 Pfam PF02033 Ribosome-binding factor A 16 121 1.4E-26 T 23-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 RPE_RS00985 7832b3f254ccf161f6ee0963600e5c24 138 Gene3D G3DSA:3.30.300.20 14 128 7.2E-32 T 23-04-2016 IPR015946 K homology domain-like, alpha/beta RPE_RS00985 7832b3f254ccf161f6ee0963600e5c24 138 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 14 122 2.5E-18 T 23-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 RPE_RS00985 7832b3f254ccf161f6ee0963600e5c24 138 SUPERFAMILY SSF89919 13 123 4.71E-31 T 23-04-2016 IPR023799 Ribosome-binding factor A domain RPE_RS00985 7832b3f254ccf161f6ee0963600e5c24 138 PANTHER PTHR33515 14 138 3.3E-35 T 23-04-2016 RPE_RS00985 7832b3f254ccf161f6ee0963600e5c24 138 ProSitePatterns PS01319 Ribosome-binding factor A signature. 87 108 - T 23-04-2016 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 RPE_RS00985 7832b3f254ccf161f6ee0963600e5c24 138 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 19 108 4.0E-46 T 23-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 RPE_RS24280 1345706d26e6c4abcdbaa378a5219c08 110 SUPERFAMILY SSF47598 4 43 8.15E-5 T 23-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 RPE_RS24280 1345706d26e6c4abcdbaa378a5219c08 110 Gene3D G3DSA:1.10.1220.10 5 37 1.2E-4 T 23-04-2016 IPR013321 Arc-type ribbon-helix-helix GO:0006355 RPE_RS06425 b58ff7f3501852ef8e113690157292f6 137 Gene3D G3DSA:3.10.180.10 4 135 3.9E-29 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RPE_RS06425 b58ff7f3501852ef8e113690157292f6 137 SUPERFAMILY SSF54593 11 134 3.76E-29 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RPE_RS06425 b58ff7f3501852ef8e113690157292f6 137 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 11 128 1.7E-11 T 23-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RPE_RS22500 ac0ebcfd503a217fae3c93f8bc4dfab4 401 Pfam PF11899 Protein of unknown function (DUF3419) 30 399 1.1E-96 T 23-04-2016 IPR021829 Protein of unknown function DUF3419 RPE_RS08305 f0e3cf6f9fd6ceff36309e0ca387e517 251 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS08305 f0e3cf6f9fd6ceff36309e0ca387e517 251 Gene3D G3DSA:3.40.50.300 10 243 2.9E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS08305 f0e3cf6f9fd6ceff36309e0ca387e517 251 SUPERFAMILY SSF52540 11 245 3.0E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS08305 f0e3cf6f9fd6ceff36309e0ca387e517 251 SMART SM00382 37 226 5.0E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS08305 f0e3cf6f9fd6ceff36309e0ca387e517 251 Pfam PF00005 ABC transporter 28 174 4.8E-32 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS08305 f0e3cf6f9fd6ceff36309e0ca387e517 251 PANTHER PTHR24220 14 250 5.4E-131 T 23-04-2016 RPE_RS08305 f0e3cf6f9fd6ceff36309e0ca387e517 251 PANTHER PTHR24220:SF568 14 250 5.4E-131 T 23-04-2016 RPE_RS13285 e38442363c58b2c18f74675b2ed76fb7 237 SUPERFAMILY SSF74653 122 219 2.09E-15 T 23-04-2016 RPE_RS13285 e38442363c58b2c18f74675b2ed76fb7 237 Pfam PF13103 TonB C terminal 133 211 5.0E-9 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 RPE_RS13285 e38442363c58b2c18f74675b2ed76fb7 237 SMART SM00965 64 115 6.7E-8 T 23-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 RPE_RS13285 e38442363c58b2c18f74675b2ed76fb7 237 PANTHER PTHR30442 1 229 4.1E-12 T 23-04-2016 RPE_RS13285 e38442363c58b2c18f74675b2ed76fb7 237 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 159 215 4.2E-10 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 RPE_RS13285 e38442363c58b2c18f74675b2ed76fb7 237 Gene3D G3DSA:3.30.1150.10 119 220 3.3E-14 T 23-04-2016 RPE_RS20520 ffa6a24c84b28689c9867ad8604f05a9 539 PANTHER PTHR37425 16 539 7.7E-71 T 23-04-2016 RPE_RS20520 ffa6a24c84b28689c9867ad8604f05a9 539 SUPERFAMILY SSF55166 69 195 6.54E-33 T 23-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain RPE_RS20520 ffa6a24c84b28689c9867ad8604f05a9 539 Gene3D G3DSA:3.30.1380.10 71 193 1.5E-27 T 23-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain RPE_RS20520 ffa6a24c84b28689c9867ad8604f05a9 539 Pfam PF05951 Bacterial protein of unknown function (DUF882) 42 191 1.1E-64 T 23-04-2016 IPR010275 Protein of unknown function DUF882 RPE_RS04815 1ffc44e713709eb8fab3d002bdba90e0 502 PANTHER PTHR11993:SF16 101 497 3.5E-167 T 23-04-2016 RPE_RS04815 1ffc44e713709eb8fab3d002bdba90e0 502 SUPERFAMILY SSF56762 157 501 1.3E-93 T 23-04-2016 IPR029014 NiFe hydrogenase-like RPE_RS04815 1ffc44e713709eb8fab3d002bdba90e0 502 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 270 423 2.0E-34 T 23-04-2016 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 RPE_RS04815 1ffc44e713709eb8fab3d002bdba90e0 502 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 52 124 8.8E-7 T 23-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 RPE_RS04815 1ffc44e713709eb8fab3d002bdba90e0 502 Gene3D G3DSA:1.10.645.10 136 371 5.8E-36 T 23-04-2016 IPR029014 NiFe hydrogenase-like RPE_RS04815 1ffc44e713709eb8fab3d002bdba90e0 502 Gene3D G3DSA:1.10.645.10 375 491 3.3E-21 T 23-04-2016 IPR029014 NiFe hydrogenase-like RPE_RS04815 1ffc44e713709eb8fab3d002bdba90e0 502 SUPERFAMILY SSF143243 18 161 4.58E-21 T 23-04-2016 RPE_RS04815 1ffc44e713709eb8fab3d002bdba90e0 502 PANTHER PTHR11993 101 497 3.5E-167 T 23-04-2016 RPE_RS22050 f51f49ac7eed86868a393b9b2e515c5d 300 PANTHER PTHR30341 13 300 2.3E-109 T 23-04-2016 RPE_RS22050 f51f49ac7eed86868a393b9b2e515c5d 300 SUPERFAMILY SSF52096 172 234 8.13E-34 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS22050 f51f49ac7eed86868a393b9b2e515c5d 300 SUPERFAMILY SSF52096 30 143 8.13E-34 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS22050 f51f49ac7eed86868a393b9b2e515c5d 300 Pfam PF01343 Peptidase family S49 97 237 7.3E-26 T 23-04-2016 IPR002142 Peptidase S49 GO:0006508|GO:0008233 RPE_RS22050 f51f49ac7eed86868a393b9b2e515c5d 300 PANTHER PTHR30341:SF1 13 300 2.3E-109 T 23-04-2016 RPE_RS22050 f51f49ac7eed86868a393b9b2e515c5d 300 Gene3D G3DSA:3.90.226.10 30 139 2.1E-34 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS22050 f51f49ac7eed86868a393b9b2e515c5d 300 Gene3D G3DSA:3.90.226.10 208 238 2.1E-34 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS10665 9d86e3c03ceba16d240d616a6e2a54fe 294 Gene3D G3DSA:3.40.50.150 119 286 2.5E-29 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS10665 9d86e3c03ceba16d240d616a6e2a54fe 294 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 63 290 1.4E-53 T 23-04-2016 RPE_RS10665 9d86e3c03ceba16d240d616a6e2a54fe 294 PANTHER PTHR18895:SF3 9 292 9.1E-54 T 23-04-2016 RPE_RS10665 9d86e3c03ceba16d240d616a6e2a54fe 294 SUPERFAMILY SSF53335 59 287 2.86E-34 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS10665 9d86e3c03ceba16d240d616a6e2a54fe 294 PANTHER PTHR18895 9 292 9.1E-54 T 23-04-2016 RPE_RS18770 37f370850c3a898d8b4b091d3b9ae8b3 423 PANTHER PTHR13696 100 411 5.0E-122 T 23-04-2016 RPE_RS18770 37f370850c3a898d8b4b091d3b9ae8b3 423 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 163 340 3.4E-9 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain RPE_RS18770 37f370850c3a898d8b4b091d3b9ae8b3 423 SUPERFAMILY SSF52540 160 403 1.24E-34 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18770 37f370850c3a898d8b4b091d3b9ae8b3 423 Gene3D G3DSA:3.40.50.300 159 400 2.3E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18770 37f370850c3a898d8b4b091d3b9ae8b3 423 PANTHER PTHR13696:SF68 100 411 5.0E-122 T 23-04-2016 RPE_RS04465 8cd740cf19f6f7e475803410fba386d4 438 Gene3D G3DSA:3.40.50.1100 186 424 7.5E-28 T 23-04-2016 RPE_RS04465 8cd740cf19f6f7e475803410fba386d4 438 PANTHER PTHR10314 109 411 8.7E-17 T 23-04-2016 RPE_RS04465 8cd740cf19f6f7e475803410fba386d4 438 PANTHER PTHR10314:SF105 109 411 8.7E-17 T 23-04-2016 RPE_RS04465 8cd740cf19f6f7e475803410fba386d4 438 SUPERFAMILY SSF53686 100 413 7.55E-23 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RPE_RS04465 8cd740cf19f6f7e475803410fba386d4 438 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 95 412 2.7E-14 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RPE_RS04465 8cd740cf19f6f7e475803410fba386d4 438 Gene3D G3DSA:3.40.50.1100 117 161 8.9E-6 T 23-04-2016 RPE_RS21570 559592a5962a1da8e884e56ab4851236 999 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 59 168 1.6E-38 T 23-04-2016 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 RPE_RS21570 559592a5962a1da8e884e56ab4851236 999 Gene3D G3DSA:3.20.20.220 171 509 2.8E-99 T 23-04-2016 IPR029041 FAD-linked oxidoreductase-like RPE_RS21570 559592a5962a1da8e884e56ab4851236 999 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 539 977 3.6E-175 T 23-04-2016 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 RPE_RS21570 559592a5962a1da8e884e56ab4851236 999 Gene3D G3DSA:1.10.2060.10 54 169 2.0E-40 T 23-04-2016 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 RPE_RS21570 559592a5962a1da8e884e56ab4851236 999 SUPERFAMILY SSF51730 171 512 3.92E-110 T 23-04-2016 IPR029041 FAD-linked oxidoreductase-like RPE_RS21570 559592a5962a1da8e884e56ab4851236 999 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 785 796 - T 23-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 RPE_RS21570 559592a5962a1da8e884e56ab4851236 999 Pfam PF00171 Aldehyde dehydrogenase family 537 977 1.7E-113 T 23-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RPE_RS21570 559592a5962a1da8e884e56ab4851236 999 SUPERFAMILY SSF53720 538 984 1.06E-120 T 23-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RPE_RS21570 559592a5962a1da8e884e56ab4851236 999 PANTHER PTHR11699:SF18 539 984 1.4E-162 T 23-04-2016 RPE_RS21570 559592a5962a1da8e884e56ab4851236 999 PANTHER PTHR11699 539 984 1.4E-162 T 23-04-2016 RPE_RS21570 559592a5962a1da8e884e56ab4851236 999 Gene3D G3DSA:3.40.309.10 773 960 1.3E-43 T 23-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RPE_RS21570 559592a5962a1da8e884e56ab4851236 999 Gene3D G3DSA:3.40.605.10 538 772 3.4E-68 T 23-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RPE_RS21570 559592a5962a1da8e884e56ab4851236 999 Pfam PF01619 Proline dehydrogenase 182 470 1.7E-90 T 23-04-2016 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|UniPathway: UPA00261 RPE_RS21570 559592a5962a1da8e884e56ab4851236 999 SUPERFAMILY SSF81935 9 170 3.14E-50 T 23-04-2016 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 RPE_RS04995 7d41bb2396c5cb98b82bcae440b5526f 103 TIGRFAM TIGR02118 TIGR02118: conserved hypothetical protein 1 101 1.1E-17 T 23-04-2016 IPR009799 EthD domain RPE_RS04995 7d41bb2396c5cb98b82bcae440b5526f 103 Pfam PF07110 EthD domain 19 91 4.0E-4 T 23-04-2016 IPR009799 EthD domain RPE_RS04995 7d41bb2396c5cb98b82bcae440b5526f 103 PANTHER PTHR40260 1 102 9.6E-19 T 23-04-2016 RPE_RS04995 7d41bb2396c5cb98b82bcae440b5526f 103 SUPERFAMILY SSF54909 1 101 7.51E-19 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RPE_RS04995 7d41bb2396c5cb98b82bcae440b5526f 103 Gene3D G3DSA:3.30.70.900 2 99 1.2E-30 T 23-04-2016 RPE_RS11475 384ebf87204983d95724b8312355f373 218 PANTHER PTHR39206 1 199 8.7E-34 T 23-04-2016 RPE_RS11475 384ebf87204983d95724b8312355f373 218 PANTHER PTHR39206:SF1 1 199 8.7E-34 T 23-04-2016 RPE_RS11475 384ebf87204983d95724b8312355f373 218 Gene3D G3DSA:3.40.50.300 1 130 2.0E-9 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS11475 384ebf87204983d95724b8312355f373 218 Pfam PF06414 Zeta toxin 2 127 1.0E-6 T 23-04-2016 IPR010488 Zeta toxin domain GO:0005524|GO:0016301 RPE_RS11475 384ebf87204983d95724b8312355f373 218 SUPERFAMILY SSF52540 1 153 4.69E-8 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS21740 f73ea627880a3235e51d46abf887f8ca 68 Pfam PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system 3 66 1.0E-14 T 23-04-2016 IPR031807 HicB-like antitoxin of toxin-antitoxin system RPE_RS21740 f73ea627880a3235e51d46abf887f8ca 68 SUPERFAMILY SSF143100 1 65 2.09E-20 T 23-04-2016 RPE_RS04420 e369c5102774ab38106817d3d8421a5a 468 PANTHER PTHR30624:SF1 20 468 5.0E-136 T 23-04-2016 RPE_RS04420 e369c5102774ab38106817d3d8421a5a 468 Pfam PF01523 Putative modulator of DNA gyrase 47 336 2.0E-52 T 23-04-2016 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RPE_RS04420 e369c5102774ab38106817d3d8421a5a 468 SUPERFAMILY SSF111283 28 468 1.7E-122 T 23-04-2016 RPE_RS04420 e369c5102774ab38106817d3d8421a5a 468 PANTHER PTHR30624 20 468 5.0E-136 T 23-04-2016 RPE_RS18710 e327dfd9f661e5540caf736f4ad23903 390 PANTHER PTHR30482 120 387 2.3E-195 T 23-04-2016 RPE_RS18710 e327dfd9f661e5540caf736f4ad23903 390 PANTHER PTHR30482 1 92 2.3E-195 T 23-04-2016 RPE_RS18710 e327dfd9f661e5540caf736f4ad23903 390 TIGRFAM TIGR03408 urea_trans_UrtC: urea ABC transporter, permease protein UrtC 41 355 1.3E-131 T 23-04-2016 IPR017778 ABC transporter, urea, permease protein, UrtC RPE_RS18710 e327dfd9f661e5540caf736f4ad23903 390 PANTHER PTHR30482:SF4 120 387 2.3E-195 T 23-04-2016 IPR017778 ABC transporter, urea, permease protein, UrtC RPE_RS18710 e327dfd9f661e5540caf736f4ad23903 390 PANTHER PTHR30482:SF4 1 92 2.3E-195 T 23-04-2016 IPR017778 ABC transporter, urea, permease protein, UrtC RPE_RS18710 e327dfd9f661e5540caf736f4ad23903 390 Pfam PF02653 Branched-chain amino acid transport system / permease component 51 345 3.3E-38 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RPE_RS12795 5cf369a0ad75a8941501d1b475f5ebac 67 Pfam PF09957 Bacterial antitoxin of type II TA system, VapB 1 43 3.2E-15 T 23-04-2016 IPR019239 Bacterial antitoxin of type II TA system, VapB RPE_RS15515 e2a6358447157163d649eda6f16ffaf9 161 ProSitePatterns PS00819 Dps protein family signature 2. 68 82 - T 23-04-2016 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 RPE_RS15515 e2a6358447157163d649eda6f16ffaf9 161 PANTHER PTHR30295 1 161 4.2E-62 T 23-04-2016 RPE_RS15515 e2a6358447157163d649eda6f16ffaf9 161 Gene3D G3DSA:1.20.1260.10 5 161 2.6E-65 T 23-04-2016 IPR012347 Ferritin-related RPE_RS15515 e2a6358447157163d649eda6f16ffaf9 161 PANTHER PTHR30295:SF6 1 161 4.2E-62 T 23-04-2016 RPE_RS15515 e2a6358447157163d649eda6f16ffaf9 161 SUPERFAMILY SSF47240 9 161 1.44E-48 T 23-04-2016 IPR009078 Ferritin-like superfamily RPE_RS15515 e2a6358447157163d649eda6f16ffaf9 161 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 66 82 1.2E-10 T 23-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 RPE_RS15515 e2a6358447157163d649eda6f16ffaf9 161 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 137 155 1.2E-10 T 23-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 RPE_RS15515 e2a6358447157163d649eda6f16ffaf9 161 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 42 58 1.2E-10 T 23-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 RPE_RS15515 e2a6358447157163d649eda6f16ffaf9 161 Pfam PF00210 Ferritin-like domain 22 161 8.8E-30 T 23-04-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 RPE_RS15515 e2a6358447157163d649eda6f16ffaf9 161 PIRSF PIRSF005900 1 161 5.1E-44 T 23-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 RPE_RS14270 283d12e97ed30179d459f64ba3a495bb 329 Gene3D G3DSA:3.40.50.1980 182 308 4.4E-41 T 23-04-2016 RPE_RS14270 283d12e97ed30179d459f64ba3a495bb 329 PRINTS PR00691 Adhesin B signature 57 75 1.5E-20 T 23-04-2016 IPR006129 Adhesin B GO:0007155 RPE_RS14270 283d12e97ed30179d459f64ba3a495bb 329 PRINTS PR00691 Adhesin B signature 189 206 1.5E-20 T 23-04-2016 IPR006129 Adhesin B GO:0007155 RPE_RS14270 283d12e97ed30179d459f64ba3a495bb 329 PRINTS PR00691 Adhesin B signature 265 283 1.5E-20 T 23-04-2016 IPR006129 Adhesin B GO:0007155 RPE_RS14270 283d12e97ed30179d459f64ba3a495bb 329 PRINTS PR00691 Adhesin B signature 286 304 1.5E-20 T 23-04-2016 IPR006129 Adhesin B GO:0007155 RPE_RS14270 283d12e97ed30179d459f64ba3a495bb 329 PRINTS PR00691 Adhesin B signature 76 95 1.5E-20 T 23-04-2016 IPR006129 Adhesin B GO:0007155 RPE_RS14270 283d12e97ed30179d459f64ba3a495bb 329 PRINTS PR00691 Adhesin B signature 32 53 1.5E-20 T 23-04-2016 IPR006129 Adhesin B GO:0007155 RPE_RS14270 283d12e97ed30179d459f64ba3a495bb 329 PANTHER PTHR30477:SF16 1 321 2.5E-109 T 23-04-2016 RPE_RS14270 283d12e97ed30179d459f64ba3a495bb 329 Pfam PF01297 Zinc-uptake complex component A periplasmic 35 306 7.4E-68 T 23-04-2016 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 RPE_RS14270 283d12e97ed30179d459f64ba3a495bb 329 PRINTS PR00690 Adhesin family signature 242 260 8.8E-39 T 23-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RPE_RS14270 283d12e97ed30179d459f64ba3a495bb 329 PRINTS PR00690 Adhesin family signature 273 292 8.8E-39 T 23-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RPE_RS14270 283d12e97ed30179d459f64ba3a495bb 329 PRINTS PR00690 Adhesin family signature 189 210 8.8E-39 T 23-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RPE_RS14270 283d12e97ed30179d459f64ba3a495bb 329 PRINTS PR00690 Adhesin family signature 63 76 8.8E-39 T 23-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RPE_RS14270 283d12e97ed30179d459f64ba3a495bb 329 PRINTS PR00690 Adhesin family signature 32 50 8.8E-39 T 23-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RPE_RS14270 283d12e97ed30179d459f64ba3a495bb 329 PRINTS PR00690 Adhesin family signature 76 93 8.8E-39 T 23-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 RPE_RS14270 283d12e97ed30179d459f64ba3a495bb 329 Gene3D G3DSA:3.40.50.1980 23 181 4.9E-45 T 23-04-2016 RPE_RS14270 283d12e97ed30179d459f64ba3a495bb 329 SUPERFAMILY SSF53807 28 309 1.32E-78 T 23-04-2016 RPE_RS14270 283d12e97ed30179d459f64ba3a495bb 329 PANTHER PTHR30477 1 321 2.5E-109 T 23-04-2016 RPE_RS06670 e4c40027b6804bb69e712a3e1cff1e35 505 Gene3D G3DSA:3.50.50.60 175 191 5.2E-35 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS06670 e4c40027b6804bb69e712a3e1cff1e35 505 Gene3D G3DSA:3.50.50.60 331 332 5.2E-35 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS06670 e4c40027b6804bb69e712a3e1cff1e35 505 Gene3D G3DSA:3.50.50.60 11 91 5.2E-35 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS06670 e4c40027b6804bb69e712a3e1cff1e35 505 Gene3D G3DSA:3.50.50.60 223 296 5.2E-35 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS06670 e4c40027b6804bb69e712a3e1cff1e35 505 Gene3D G3DSA:3.50.50.60 447 497 5.2E-35 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS06670 e4c40027b6804bb69e712a3e1cff1e35 505 PANTHER PTHR10668 12 501 4.9E-90 T 23-04-2016 RPE_RS06670 e4c40027b6804bb69e712a3e1cff1e35 505 Pfam PF01593 Flavin containing amine oxidoreductase 18 495 2.2E-23 T 23-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 RPE_RS06670 e4c40027b6804bb69e712a3e1cff1e35 505 TIGRFAM TIGR02734 crtI_fam: phytoene desaturase 11 501 4.3E-91 T 23-04-2016 IPR014105 Carotenoid/retinoid oxidoreductase GO:0016117|GO:0055114 RPE_RS06670 e4c40027b6804bb69e712a3e1cff1e35 505 PANTHER PTHR10668:SF75 12 501 4.9E-90 T 23-04-2016 RPE_RS06670 e4c40027b6804bb69e712a3e1cff1e35 505 SUPERFAMILY SSF51905 11 326 2.82E-60 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS06670 e4c40027b6804bb69e712a3e1cff1e35 505 SUPERFAMILY SSF51905 460 501 2.82E-60 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS15010 3dc69a55ca9f3fecd3c4efa382b8512a 451 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 321 2.2E-75 T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RPE_RS15010 3dc69a55ca9f3fecd3c4efa382b8512a 451 SUPERFAMILY SSF52440 1 113 3.53E-48 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RPE_RS15010 3dc69a55ca9f3fecd3c4efa382b8512a 451 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 1.4E-43 T 23-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain RPE_RS15010 3dc69a55ca9f3fecd3c4efa382b8512a 451 Pfam PF02785 Biotin carboxylase C-terminal domain 335 441 1.8E-37 T 23-04-2016 IPR005482 Biotin carboxylase, C-terminal RPE_RS15010 3dc69a55ca9f3fecd3c4efa382b8512a 451 PANTHER PTHR18866 1 446 3.8E-282 T 23-04-2016 RPE_RS15010 3dc69a55ca9f3fecd3c4efa382b8512a 451 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 445 2.3E-212 T 23-04-2016 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 RPE_RS15010 3dc69a55ca9f3fecd3c4efa382b8512a 451 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 285 292 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RPE_RS15010 3dc69a55ca9f3fecd3c4efa382b8512a 451 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 23-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RPE_RS15010 3dc69a55ca9f3fecd3c4efa382b8512a 451 Gene3D G3DSA:3.40.50.20 1 129 1.2E-50 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RPE_RS15010 3dc69a55ca9f3fecd3c4efa382b8512a 451 Gene3D G3DSA:3.30.1490.20 130 202 3.6E-26 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RPE_RS15010 3dc69a55ca9f3fecd3c4efa382b8512a 451 SMART SM00878 335 440 2.0E-63 T 23-04-2016 IPR005482 Biotin carboxylase, C-terminal RPE_RS15010 3dc69a55ca9f3fecd3c4efa382b8512a 451 Gene3D G3DSA:3.30.470.20 203 442 1.5E-93 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RPE_RS15010 3dc69a55ca9f3fecd3c4efa382b8512a 451 SUPERFAMILY SSF56059 83 345 3.36E-68 T 23-04-2016 RPE_RS15010 3dc69a55ca9f3fecd3c4efa382b8512a 451 SUPERFAMILY SSF51246 330 443 6.28E-42 T 23-04-2016 IPR011054 Rudiment single hybrid motif RPE_RS19520 484e0ae714e25588b5e7b773f9e5ee98 498 SUPERFAMILY SSF55729 128 275 4.01E-13 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS19520 484e0ae714e25588b5e7b773f9e5ee98 498 Pfam PF13581 Histidine kinase-like ATPase domain 17 127 3.8E-14 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS19520 484e0ae714e25588b5e7b773f9e5ee98 498 Gene3D G3DSA:3.40.630.30 164 271 2.4E-7 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS15975 22b5bfa8f0b59f947f5b7fa1bb359dd3 417 Gene3D G3DSA:3.40.50.1980 150 257 7.6E-10 T 23-04-2016 RPE_RS15975 22b5bfa8f0b59f947f5b7fa1bb359dd3 417 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 12 413 2.4E-68 T 23-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 RPE_RS15975 22b5bfa8f0b59f947f5b7fa1bb359dd3 417 Gene3D G3DSA:3.40.50.1980 12 149 1.4E-30 T 23-04-2016 RPE_RS15975 22b5bfa8f0b59f947f5b7fa1bb359dd3 417 PANTHER PTHR33712 1 411 3.7E-49 T 23-04-2016 RPE_RS15975 22b5bfa8f0b59f947f5b7fa1bb359dd3 417 SUPERFAMILY SSF53807 9 412 3.92E-77 T 23-04-2016 RPE_RS15760 c342f024be86585fedc706114ef91041 490 SMART SM00304 204 256 4.8E-6 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS15760 c342f024be86585fedc706114ef91041 490 Pfam PF16448 LapD/MoxY periplasmic domain 98 178 5.7E-6 T 23-04-2016 IPR032244 LapD/MoxY, periplasmic domain RPE_RS15760 c342f024be86585fedc706114ef91041 490 Pfam PF07730 Histidine kinase 272 342 1.2E-6 T 23-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RPE_RS15760 c342f024be86585fedc706114ef91041 490 Pfam PF00672 HAMP domain 186 252 5.7E-7 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS15760 c342f024be86585fedc706114ef91041 490 PRINTS PR00344 Bacterial sensor protein C-terminal signature 425 439 8.1E-5 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS15760 c342f024be86585fedc706114ef91041 490 PRINTS PR00344 Bacterial sensor protein C-terminal signature 464 477 8.1E-5 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS15760 c342f024be86585fedc706114ef91041 490 PRINTS PR00344 Bacterial sensor protein C-terminal signature 440 458 8.1E-5 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS15760 c342f024be86585fedc706114ef91041 490 Gene3D G3DSA:3.30.565.10 343 478 4.8E-6 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS15760 c342f024be86585fedc706114ef91041 490 SUPERFAMILY SSF55874 346 478 1.38E-13 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS15760 c342f024be86585fedc706114ef91041 490 SMART SM00387 382 480 0.0027 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS15760 c342f024be86585fedc706114ef91041 490 PANTHER PTHR24421 267 489 5.9E-20 T 23-04-2016 RPE_RS15760 c342f024be86585fedc706114ef91041 490 PANTHER PTHR24421 18 78 5.9E-20 T 23-04-2016 RPE_RS14185 318396b468b1211bec3e097cdcb31c64 194 Pfam PF02620 Uncharacterized ACR, COG1399 68 180 1.3E-11 T 23-04-2016 IPR003772 Protein of unknown function DUF177 RPE_RS10460 5a0f4b4f3e38dd8f42e0e2f506c8196d 158 SMART SM00347 33 134 2.5E-10 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RPE_RS10460 5a0f4b4f3e38dd8f42e0e2f506c8196d 158 PANTHER PTHR33164 16 158 1.5E-19 T 23-04-2016 RPE_RS10460 5a0f4b4f3e38dd8f42e0e2f506c8196d 158 SUPERFAMILY SSF46785 8 150 1.05E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS10460 5a0f4b4f3e38dd8f42e0e2f506c8196d 158 Pfam PF12802 MarR family 38 98 1.1E-14 T 23-04-2016 RPE_RS10460 5a0f4b4f3e38dd8f42e0e2f506c8196d 158 Gene3D G3DSA:1.10.10.10 10 150 9.7E-30 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS01820 5de69b10884222cde663fa2459c411a8 316 PANTHER PTHR37323 62 311 1.5E-38 T 23-04-2016 RPE_RS01820 5de69b10884222cde663fa2459c411a8 316 Pfam PF13444 Acetyltransferase (GNAT) domain 79 191 4.8E-31 T 23-04-2016 RPE_RS01820 5de69b10884222cde663fa2459c411a8 316 PANTHER PTHR37323:SF1 62 311 1.5E-38 T 23-04-2016 RPE_RS01820 5de69b10884222cde663fa2459c411a8 316 Gene3D G3DSA:3.40.630.30 64 210 4.1E-16 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS01820 5de69b10884222cde663fa2459c411a8 316 SUPERFAMILY SSF55729 62 287 9.54E-35 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS14010 bffc0d3b356d831ab48c8fc3807db6e7 96 Gene3D G3DSA:1.10.150.250 11 89 7.2E-25 T 23-04-2016 IPR005631 Flavinator of succinate dehydrogenase RPE_RS14010 bffc0d3b356d831ab48c8fc3807db6e7 96 PANTHER PTHR12469 6 94 1.6E-31 T 23-04-2016 RPE_RS14010 bffc0d3b356d831ab48c8fc3807db6e7 96 Pfam PF03937 Flavinator of succinate dehydrogenase 15 83 5.3E-21 T 23-04-2016 IPR005631 Flavinator of succinate dehydrogenase RPE_RS14010 bffc0d3b356d831ab48c8fc3807db6e7 96 PANTHER PTHR12469:SF3 6 94 1.6E-31 T 23-04-2016 RPE_RS14010 bffc0d3b356d831ab48c8fc3807db6e7 96 SUPERFAMILY SSF109910 11 88 1.02E-20 T 23-04-2016 IPR005631 Flavinator of succinate dehydrogenase RPE_RS10050 6e13bf486608bced45683c573f0c3ca1 124 PANTHER PTHR35006 1 124 6.9E-42 T 23-04-2016 RPE_RS10050 6e13bf486608bced45683c573f0c3ca1 124 SUPERFAMILY SSF54593 2 123 2.69E-25 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RPE_RS10050 6e13bf486608bced45683c573f0c3ca1 124 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 2 118 2.7E-9 T 23-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RPE_RS10050 6e13bf486608bced45683c573f0c3ca1 124 Gene3D G3DSA:3.10.180.10 1 121 3.1E-32 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RPE_RS03270 6fc89d3a6b278136528d7e5d077b56d8 246 PIRSF PIRSF001430 1 246 5.9E-73 T 23-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RPE_RS03270 6fc89d3a6b278136528d7e5d077b56d8 246 PANTHER PTHR11142 1 246 3.6E-92 T 23-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RPE_RS03270 6fc89d3a6b278136528d7e5d077b56d8 246 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 2 245 34.707 T 23-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RPE_RS03270 6fc89d3a6b278136528d7e5d077b56d8 246 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 5 240 1.5E-54 T 23-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RPE_RS03270 6fc89d3a6b278136528d7e5d077b56d8 246 PANTHER PTHR11142:SF0 1 246 3.6E-92 T 23-04-2016 RPE_RS03270 6fc89d3a6b278136528d7e5d077b56d8 246 Gene3D G3DSA:3.30.70.660 108 243 5.3E-46 T 23-04-2016 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 RPE_RS03270 6fc89d3a6b278136528d7e5d077b56d8 246 SUPERFAMILY SSF55120 1 246 1.02E-83 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RPE_RS03270 6fc89d3a6b278136528d7e5d077b56d8 246 Gene3D G3DSA:3.30.70.580 1 106 1.4E-35 T 23-04-2016 IPR020094 Pseudouridine synthase I, TruA, N-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 RPE_RS03270 6fc89d3a6b278136528d7e5d077b56d8 246 Pfam PF01416 tRNA pseudouridine synthase 144 246 4.0E-28 T 23-04-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RPE_RS03270 6fc89d3a6b278136528d7e5d077b56d8 246 Pfam PF01416 tRNA pseudouridine synthase 7 104 7.2E-11 T 23-04-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RPE_RS04915 b2fbafeb94b95792c805b94834dc2be7 173 SUPERFAMILY SSF47240 12 163 2.36E-44 T 23-04-2016 IPR009078 Ferritin-like superfamily RPE_RS04915 b2fbafeb94b95792c805b94834dc2be7 173 Pfam PF00210 Ferritin-like domain 28 161 2.3E-26 T 23-04-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 RPE_RS04915 b2fbafeb94b95792c805b94834dc2be7 173 PIRSF PIRSF005900 4 171 3.6E-47 T 23-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 RPE_RS04915 b2fbafeb94b95792c805b94834dc2be7 173 PANTHER PTHR30295:SF6 5 168 1.7E-63 T 23-04-2016 RPE_RS04915 b2fbafeb94b95792c805b94834dc2be7 173 PANTHER PTHR30295 5 168 1.7E-63 T 23-04-2016 RPE_RS04915 b2fbafeb94b95792c805b94834dc2be7 173 Gene3D G3DSA:1.20.1260.10 7 163 5.2E-56 T 23-04-2016 IPR012347 Ferritin-related RPE_RS04915 b2fbafeb94b95792c805b94834dc2be7 173 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 47 63 4.5E-8 T 23-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 RPE_RS04915 b2fbafeb94b95792c805b94834dc2be7 173 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 71 87 4.5E-8 T 23-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 RPE_RS04915 b2fbafeb94b95792c805b94834dc2be7 173 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 143 161 4.5E-8 T 23-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 RPE_RS01425 6ac6ff312f1335cc60a53db05ef4ca21 186 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 11 180 1.6E-35 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RPE_RS01425 6ac6ff312f1335cc60a53db05ef4ca21 186 Hamap MF_01416 ATP synthase subunit delta [atpD]. 7 184 19.376 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RPE_RS01425 6ac6ff312f1335cc60a53db05ef4ca21 186 Pfam PF00213 ATP synthase delta (OSCP) subunit 11 182 3.8E-48 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RPE_RS01425 6ac6ff312f1335cc60a53db05ef4ca21 186 Gene3D G3DSA:1.10.520.20 8 113 8.5E-24 T 23-04-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain RPE_RS01425 6ac6ff312f1335cc60a53db05ef4ca21 186 SUPERFAMILY SSF47928 8 112 4.71E-23 T 23-04-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain RPE_RS01425 6ac6ff312f1335cc60a53db05ef4ca21 186 PRINTS PR00125 ATP synthase delta subunit signature 81 92 7.8E-28 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RPE_RS01425 6ac6ff312f1335cc60a53db05ef4ca21 186 PRINTS PR00125 ATP synthase delta subunit signature 92 106 7.8E-28 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RPE_RS01425 6ac6ff312f1335cc60a53db05ef4ca21 186 PRINTS PR00125 ATP synthase delta subunit signature 157 175 7.8E-28 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RPE_RS01425 6ac6ff312f1335cc60a53db05ef4ca21 186 PRINTS PR00125 ATP synthase delta subunit signature 142 157 7.8E-28 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RPE_RS01425 6ac6ff312f1335cc60a53db05ef4ca21 186 PRINTS PR00125 ATP synthase delta subunit signature 11 30 7.8E-28 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RPE_RS01425 6ac6ff312f1335cc60a53db05ef4ca21 186 PANTHER PTHR11910 8 186 5.7E-56 T 23-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RPE_RS01425 6ac6ff312f1335cc60a53db05ef4ca21 186 PANTHER PTHR11910:SF1 8 186 5.7E-56 T 23-04-2016 RPE_RS01425 6ac6ff312f1335cc60a53db05ef4ca21 186 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 144 163 - T 23-04-2016 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 RPE_RS02095 e4478ac24192aba2279dafb37e0d16db 326 PANTHER PTHR10992 30 313 2.8E-15 T 23-04-2016 RPE_RS02095 e4478ac24192aba2279dafb37e0d16db 326 SUPERFAMILY SSF53474 40 309 1.38E-28 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS02095 e4478ac24192aba2279dafb37e0d16db 326 Pfam PF12697 Alpha/beta hydrolase family 55 303 4.8E-9 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS02095 e4478ac24192aba2279dafb37e0d16db 326 Gene3D G3DSA:3.40.50.1820 39 311 5.9E-28 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS11860 e3f96b6fecbd55698acd93b670e3779a 69 SMART SM00357 3 69 8.8E-26 T 23-04-2016 IPR011129 Cold shock protein GO:0003676 RPE_RS11860 e3f96b6fecbd55698acd93b670e3779a 69 Gene3D G3DSA:2.40.50.140 1 65 9.9E-26 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS11860 e3f96b6fecbd55698acd93b670e3779a 69 PANTHER PTHR11544 1 53 6.4E-24 T 23-04-2016 RPE_RS11860 e3f96b6fecbd55698acd93b670e3779a 69 PIRSF PIRSF002599 1 69 6.1E-22 T 23-04-2016 IPR012156 Cold shock, CspA GO:0003676 RPE_RS11860 e3f96b6fecbd55698acd93b670e3779a 69 SUPERFAMILY SSF50249 1 68 1.14E-22 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS11860 e3f96b6fecbd55698acd93b670e3779a 69 Pfam PF00313 'Cold-shock' DNA-binding domain 3 64 2.4E-24 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RPE_RS11860 e3f96b6fecbd55698acd93b670e3779a 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 23-04-2016 IPR019844 Cold-shock conserved site RPE_RS11860 e3f96b6fecbd55698acd93b670e3779a 69 PRINTS PR00050 Cold shock protein signature 25 34 8.0E-13 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RPE_RS11860 e3f96b6fecbd55698acd93b670e3779a 69 PRINTS PR00050 Cold shock protein signature 4 19 8.0E-13 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RPE_RS11860 e3f96b6fecbd55698acd93b670e3779a 69 PRINTS PR00050 Cold shock protein signature 40 58 8.0E-13 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RPE_RS11380 741455734ea6596a9c08eff561cab891 370 Pfam PF03235 Protein of unknown function DUF262 23 192 1.4E-21 T 23-04-2016 IPR004919 Domain of unknown function DUF262 RPE_RS11380 741455734ea6596a9c08eff561cab891 370 PANTHER PTHR39639 4 107 3.3E-14 T 23-04-2016 RPE_RS11380 741455734ea6596a9c08eff561cab891 370 PANTHER PTHR39639 123 213 3.3E-14 T 23-04-2016 RPE_RS01190 5a36e06164f697d1eb613d862334d44a 387 Gene3D G3DSA:3.40.50.1820 28 308 1.0E-49 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS01190 5a36e06164f697d1eb613d862334d44a 387 SUPERFAMILY SSF53474 28 136 2.72E-17 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS01190 5a36e06164f697d1eb613d862334d44a 387 PANTHER PTHR11731:SF134 33 299 2.1E-21 T 23-04-2016 RPE_RS01190 5a36e06164f697d1eb613d862334d44a 387 PANTHER PTHR11731 33 299 2.1E-21 T 23-04-2016 RPE_RS01190 5a36e06164f697d1eb613d862334d44a 387 SUPERFAMILY SSF53474 134 326 1.32E-45 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS01190 5a36e06164f697d1eb613d862334d44a 387 TIGRFAM TIGR01840 esterase_phb: esterase, PHB depolymerase family 50 262 4.4E-74 T 23-04-2016 IPR010126 Esterase, PHB depolymerase GO:0005576 RPE_RS01190 5a36e06164f697d1eb613d862334d44a 387 Pfam PF10503 Esterase PHB depolymerase 53 253 8.0E-50 T 23-04-2016 IPR010126 Esterase, PHB depolymerase GO:0005576 RPE_RS22820 a22276c54b803bd7b6849eb6069c3a9c 161 Gene3D G3DSA:3.10.20.30 3 75 1.2E-28 T 23-04-2016 IPR012675 Beta-grasp domain RPE_RS22820 a22276c54b803bd7b6849eb6069c3a9c 161 Gene3D G3DSA:1.10.150.120 76 156 1.6E-31 T 23-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RPE_RS22820 a22276c54b803bd7b6849eb6069c3a9c 161 PANTHER PTHR11908 2 140 1.2E-38 T 23-04-2016 RPE_RS22820 a22276c54b803bd7b6849eb6069c3a9c 161 SUPERFAMILY SSF47741 85 157 4.32E-29 T 23-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RPE_RS22820 a22276c54b803bd7b6849eb6069c3a9c 161 PANTHER PTHR11908:SF66 2 140 1.2E-38 T 23-04-2016 RPE_RS22820 a22276c54b803bd7b6849eb6069c3a9c 161 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 7 60 1.9E-8 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RPE_RS22820 a22276c54b803bd7b6849eb6069c3a9c 161 Pfam PF01799 [2Fe-2S] binding domain 74 147 1.2E-28 T 23-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RPE_RS22820 a22276c54b803bd7b6849eb6069c3a9c 161 SUPERFAMILY SSF54292 3 79 7.34E-26 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RPE_RS10610 14c07474e7cb0b17bbe5ef8b6d112cb5 325 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 77 310 22.401 T 23-04-2016 IPR026579 Cell division protein FtsQ GO:0000917 RPE_RS10610 14c07474e7cb0b17bbe5ef8b6d112cb5 325 Pfam PF08478 POTRA domain, FtsQ-type 107 175 8.2E-18 T 23-04-2016 IPR013685 Polypeptide-transport-associated, FtsQ-type RPE_RS10610 14c07474e7cb0b17bbe5ef8b6d112cb5 325 PANTHER PTHR35851:SF1 17 84 1.2E-53 T 23-04-2016 RPE_RS10610 14c07474e7cb0b17bbe5ef8b6d112cb5 325 PANTHER PTHR35851:SF1 101 317 1.2E-53 T 23-04-2016 RPE_RS10610 14c07474e7cb0b17bbe5ef8b6d112cb5 325 PANTHER PTHR35851 17 84 1.2E-53 T 23-04-2016 RPE_RS10610 14c07474e7cb0b17bbe5ef8b6d112cb5 325 PANTHER PTHR35851 101 317 1.2E-53 T 23-04-2016 RPE_RS10610 14c07474e7cb0b17bbe5ef8b6d112cb5 325 Pfam PF03799 Cell division protein FtsQ 179 292 2.3E-13 T 23-04-2016 IPR005548 Cell division protein FtsQ/DivIB RPE_RS13650 f370a91f309d05f1c3e76642c3b1db7c 3866 PANTHER PTHR12338 365 750 1.0E-26 T 23-04-2016 RPE_RS13650 f370a91f309d05f1c3e76642c3b1db7c 3866 PANTHER PTHR12338 29 242 1.0E-26 T 23-04-2016 RPE_RS13650 f370a91f309d05f1c3e76642c3b1db7c 3866 PANTHER PTHR12338 283 321 1.0E-26 T 23-04-2016 RPE_RS13650 f370a91f309d05f1c3e76642c3b1db7c 3866 PANTHER PTHR12338:SF6 365 750 1.0E-26 T 23-04-2016 RPE_RS13650 f370a91f309d05f1c3e76642c3b1db7c 3866 PANTHER PTHR12338:SF6 29 242 1.0E-26 T 23-04-2016 RPE_RS13650 f370a91f309d05f1c3e76642c3b1db7c 3866 PANTHER PTHR12338:SF6 283 321 1.0E-26 T 23-04-2016 RPE_RS13650 f370a91f309d05f1c3e76642c3b1db7c 3866 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 123 203 3.2E-21 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal RPE_RS13650 f370a91f309d05f1c3e76642c3b1db7c 3866 Pfam PF12545 Filamentous haemagglutinin family outer membrane protein 3662 3771 1.2E-31 T 23-04-2016 IPR021026 Filamentous haemagglutinin family outer membrane protein, domain of unknown function DUF3739 RPE_RS13650 f370a91f309d05f1c3e76642c3b1db7c 3866 Gene3D G3DSA:2.160.20.10 268 318 5.1E-17 T 23-04-2016 IPR012334 Pectin lyase fold RPE_RS13650 f370a91f309d05f1c3e76642c3b1db7c 3866 Gene3D G3DSA:2.160.20.10 97 217 5.1E-17 T 23-04-2016 IPR012334 Pectin lyase fold RPE_RS13650 f370a91f309d05f1c3e76642c3b1db7c 3866 SUPERFAMILY SSF51126 263 342 9.73E-33 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor RPE_RS13650 f370a91f309d05f1c3e76642c3b1db7c 3866 SUPERFAMILY SSF51126 94 212 9.73E-33 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor RPE_RS13650 f370a91f309d05f1c3e76642c3b1db7c 3866 SUPERFAMILY SSF51126 383 477 9.73E-33 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor RPE_RS13650 f370a91f309d05f1c3e76642c3b1db7c 3866 SMART SM00912 90 208 2.4E-24 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal RPE_RS13650 f370a91f309d05f1c3e76642c3b1db7c 3866 Pfam PF05860 haemagglutination activity domain 100 204 6.6E-18 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal RPE_RS12630 59357a0a66ae3a0fec2d4d53bbc87855 103 SUPERFAMILY SSF47729 16 103 2.8E-27 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RPE_RS12630 59357a0a66ae3a0fec2d4d53bbc87855 103 Gene3D G3DSA:4.10.520.10 14 103 4.7E-30 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RPE_RS12630 59357a0a66ae3a0fec2d4d53bbc87855 103 PRINTS PR01727 Prokaryotic integration host factor signature 88 102 2.9E-12 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RPE_RS12630 59357a0a66ae3a0fec2d4d53bbc87855 103 PRINTS PR01727 Prokaryotic integration host factor signature 72 85 2.9E-12 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RPE_RS12630 59357a0a66ae3a0fec2d4d53bbc87855 103 PRINTS PR01727 Prokaryotic integration host factor signature 54 69 2.9E-12 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RPE_RS12630 59357a0a66ae3a0fec2d4d53bbc87855 103 PANTHER PTHR33175 15 103 4.5E-33 T 23-04-2016 RPE_RS12630 59357a0a66ae3a0fec2d4d53bbc87855 103 Pfam PF00216 Bacterial DNA-binding protein 16 103 2.6E-29 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RPE_RS12630 59357a0a66ae3a0fec2d4d53bbc87855 103 SMART SM00411 15 103 4.9E-26 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RPE_RS09150 6803739f16cd19088f89084d1c3ab0ab 862 Pfam PF03176 MMPL family 230 429 1.5E-18 T 23-04-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 RPE_RS09150 6803739f16cd19088f89084d1c3ab0ab 862 Gene3D G3DSA:1.20.1640.10 707 854 5.5E-17 T 23-04-2016 RPE_RS09150 6803739f16cd19088f89084d1c3ab0ab 862 Gene3D G3DSA:1.20.1640.10 231 432 3.3E-26 T 23-04-2016 RPE_RS09150 6803739f16cd19088f89084d1c3ab0ab 862 SUPERFAMILY SSF82866 666 855 1.16E-24 T 23-04-2016 RPE_RS09150 6803739f16cd19088f89084d1c3ab0ab 862 SUPERFAMILY SSF82866 235 429 1.57E-25 T 23-04-2016 RPE_RS09150 6803739f16cd19088f89084d1c3ab0ab 862 PANTHER PTHR33406 160 859 4.0E-146 T 23-04-2016 RPE_RS09150 6803739f16cd19088f89084d1c3ab0ab 862 PANTHER PTHR33406 2 99 4.0E-146 T 23-04-2016 RPE_RS09150 6803739f16cd19088f89084d1c3ab0ab 862 PANTHER PTHR33406:SF2 160 859 4.0E-146 T 23-04-2016 RPE_RS09150 6803739f16cd19088f89084d1c3ab0ab 862 PANTHER PTHR33406:SF2 2 99 4.0E-146 T 23-04-2016 RPE_RS09150 6803739f16cd19088f89084d1c3ab0ab 862 TIGRFAM TIGR03480 HpnN: hopanoid biosynthesis associated RND transporter like protein HpnN 6 859 0.0 T 23-04-2016 IPR017841 Hopanoid biosynthesis associated RND transporter-like protein HpnN RPE_RS08650 7079c47a1d53b225cd21c6637450399a 102 PANTHER PTHR11434:SF4 6 102 1.3E-23 T 23-04-2016 RPE_RS08650 7079c47a1d53b225cd21c6637450399a 102 PANTHER PTHR11434 6 102 1.3E-23 T 23-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 RPE_RS08650 7079c47a1d53b225cd21c6637450399a 102 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 10 97 9.5E-17 T 23-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 RPE_RS08650 7079c47a1d53b225cd21c6637450399a 102 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 4 102 16.12 T 23-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 RPE_RS07460 b2342041c2862ba33da3590653101818 830 SMART SM01079 85 279 2.3E-43 T 23-04-2016 IPR006189 CHASE domain RPE_RS07460 b2342041c2862ba33da3590653101818 830 Pfam PF00563 EAL domain 561 797 3.4E-72 T 23-04-2016 IPR001633 EAL domain RPE_RS07460 b2342041c2862ba33da3590653101818 830 SMART SM00052 555 802 3.5E-99 T 23-04-2016 IPR001633 EAL domain RPE_RS07460 b2342041c2862ba33da3590653101818 830 PANTHER PTHR10799:SF710 345 655 2.3E-75 T 23-04-2016 RPE_RS07460 b2342041c2862ba33da3590653101818 830 SUPERFAMILY SSF55073 389 544 7.69E-47 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS07460 b2342041c2862ba33da3590653101818 830 SUPERFAMILY SSF141868 561 808 5.62E-81 T 23-04-2016 IPR001633 EAL domain RPE_RS07460 b2342041c2862ba33da3590653101818 830 Pfam PF00990 Diguanylate cyclase, GGDEF domain 384 540 7.6E-45 T 23-04-2016 IPR000160 GGDEF domain RPE_RS07460 b2342041c2862ba33da3590653101818 830 PANTHER PTHR10799 345 655 2.3E-75 T 23-04-2016 RPE_RS07460 b2342041c2862ba33da3590653101818 830 Pfam PF03924 CHASE domain 88 265 1.4E-32 T 23-04-2016 IPR006189 CHASE domain RPE_RS07460 b2342041c2862ba33da3590653101818 830 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 382 543 7.4E-42 T 23-04-2016 IPR000160 GGDEF domain RPE_RS07460 b2342041c2862ba33da3590653101818 830 Gene3D G3DSA:3.20.20.450 559 809 1.7E-89 T 23-04-2016 IPR001633 EAL domain RPE_RS07460 b2342041c2862ba33da3590653101818 830 Gene3D G3DSA:3.30.70.270 386 552 3.7E-54 T 23-04-2016 RPE_RS07460 b2342041c2862ba33da3590653101818 830 SMART SM00267 373 545 2.8E-59 T 23-04-2016 IPR000160 GGDEF domain RPE_RS10740 50a3fe80f27ae504ed3147d0d66b2f26 1188 Pfam PF13502 AsmA-like C-terminal region 859 1056 2.3E-24 T 23-04-2016 IPR032712 AsmA-like, C-terminal RPE_RS10740 50a3fe80f27ae504ed3147d0d66b2f26 1188 Pfam PF05170 AsmA family 10 131 2.1E-13 T 23-04-2016 IPR007844 AsmA RPE_RS10740 50a3fe80f27ae504ed3147d0d66b2f26 1188 PIRSF PIRSF034039 1 1122 1.4E-287 T 23-04-2016 IPR017023 Uncharacterised conserved protein UCP034039 RPE_RS06395 163de2a737d6baffa9524fdca0dad493 435 Pfam PF13379 NMT1-like family 45 304 1.1E-106 T 23-04-2016 RPE_RS06395 163de2a737d6baffa9524fdca0dad493 435 PANTHER PTHR30024:SF10 174 431 9.8E-154 T 23-04-2016 RPE_RS06395 163de2a737d6baffa9524fdca0dad493 435 PANTHER PTHR30024:SF10 6 150 9.8E-154 T 23-04-2016 RPE_RS06395 163de2a737d6baffa9524fdca0dad493 435 PANTHER PTHR30024 174 431 9.8E-154 T 23-04-2016 RPE_RS06395 163de2a737d6baffa9524fdca0dad493 435 PANTHER PTHR30024 6 150 9.8E-154 T 23-04-2016 RPE_RS06395 163de2a737d6baffa9524fdca0dad493 435 Gene3D G3DSA:3.40.190.10 180 283 4.1E-10 T 23-04-2016 RPE_RS06395 163de2a737d6baffa9524fdca0dad493 435 SUPERFAMILY SSF53850 52 300 3.91E-24 T 23-04-2016 RPE_RS20205 e7791b9f9128bf8d70622e2465f486ee 99 SUPERFAMILY SSF47729 5 99 9.71E-21 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RPE_RS20205 e7791b9f9128bf8d70622e2465f486ee 99 PANTHER PTHR33175 5 99 6.1E-34 T 23-04-2016 RPE_RS20205 e7791b9f9128bf8d70622e2465f486ee 99 PANTHER PTHR33175:SF1 5 99 6.1E-34 T 23-04-2016 RPE_RS20205 e7791b9f9128bf8d70622e2465f486ee 99 Pfam PF00216 Bacterial DNA-binding protein 5 99 1.9E-21 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RPE_RS20205 e7791b9f9128bf8d70622e2465f486ee 99 Gene3D G3DSA:4.10.520.10 4 99 8.2E-20 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RPE_RS20205 e7791b9f9128bf8d70622e2465f486ee 99 SMART SM00411 5 99 1.4E-7 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RPE_RS09745 1c3242b5a7834741fab40ef3c26c7298 225 SMART SM00862 146 221 4.1E-28 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS09745 1c3242b5a7834741fab40ef3c26c7298 225 SUPERFAMILY SSF46894 122 221 1.76E-31 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RPE_RS09745 1c3242b5a7834741fab40ef3c26c7298 225 PANTHER PTHR26402 1 224 2.8E-95 T 23-04-2016 RPE_RS09745 1c3242b5a7834741fab40ef3c26c7298 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 220 6.2E-28 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS09745 1c3242b5a7834741fab40ef3c26c7298 225 Gene3D G3DSA:3.40.50.2300 1 119 1.4E-31 T 23-04-2016 RPE_RS09745 1c3242b5a7834741fab40ef3c26c7298 225 Pfam PF00072 Response regulator receiver domain 4 112 4.5E-21 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS09745 1c3242b5a7834741fab40ef3c26c7298 225 SUPERFAMILY SSF52172 1 118 1.17E-32 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS09745 1c3242b5a7834741fab40ef3c26c7298 225 Gene3D G3DSA:1.10.10.10 124 222 7.6E-36 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS09745 1c3242b5a7834741fab40ef3c26c7298 225 SMART SM00448 1 112 2.6E-31 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS09745 1c3242b5a7834741fab40ef3c26c7298 225 PANTHER PTHR26402:SF578 1 224 2.8E-95 T 23-04-2016 RPE_RS15470 ec569e85a91ad9dc63304f8f8b300e37 152 Gene3D G3DSA:3.40.30.10 53 140 3.8E-6 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS15470 ec569e85a91ad9dc63304f8f8b300e37 152 SUPERFAMILY SSF52833 53 143 3.59E-9 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS15945 764a32936488361750475c3df857de17 257 PANTHER PTHR30429 4 257 4.0E-116 T 23-04-2016 IPR004872 Lipoprotein NlpA family RPE_RS15945 764a32936488361750475c3df857de17 257 Gene3D G3DSA:3.40.190.10 20 149 1.8E-49 T 23-04-2016 RPE_RS15945 764a32936488361750475c3df857de17 257 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 18 257 2.8E-70 T 23-04-2016 IPR004872 Lipoprotein NlpA family RPE_RS15945 764a32936488361750475c3df857de17 257 Pfam PF03180 NLPA lipoprotein 22 257 6.6E-90 T 23-04-2016 IPR004872 Lipoprotein NlpA family RPE_RS15945 764a32936488361750475c3df857de17 257 SUPERFAMILY SSF53850 21 257 1.86E-82 T 23-04-2016 RPE_RS15945 764a32936488361750475c3df857de17 257 PIRSF PIRSF002854 2 257 8.7E-95 T 23-04-2016 IPR004872 Lipoprotein NlpA family RPE_RS01520 86a90a63f60caecd19d525e043fa86f5 213 Gene3D G3DSA:3.40.50.1110 26 204 2.5E-54 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain RPE_RS01520 86a90a63f60caecd19d525e043fa86f5 213 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 31 189 1.0E-25 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain RPE_RS01520 86a90a63f60caecd19d525e043fa86f5 213 SUPERFAMILY SSF52266 26 203 9.01E-50 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain RPE_RS01520 86a90a63f60caecd19d525e043fa86f5 213 ProSitePatterns PS01098 Lipolytic enzymes "G-D-S-L" family, serine active site. 29 39 - T 23-04-2016 IPR008265 Lipase, GDSL, active site GO:0006629|GO:0016298 RPE_RS01520 86a90a63f60caecd19d525e043fa86f5 213 PANTHER PTHR30383 9 208 7.0E-46 T 23-04-2016 RPE_RS21940 26538569a94730e3e5ded7d613762375 444 Gene3D G3DSA:2.30.40.10 6 69 9.3E-20 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RPE_RS21940 26538569a94730e3e5ded7d613762375 444 PANTHER PTHR11647 1 437 3.1E-144 T 23-04-2016 RPE_RS21940 26538569a94730e3e5ded7d613762375 444 SUPERFAMILY SSF51338 367 434 6.66E-33 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RPE_RS21940 26538569a94730e3e5ded7d613762375 444 SUPERFAMILY SSF51338 5 56 6.66E-33 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RPE_RS21940 26538569a94730e3e5ded7d613762375 444 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 23 424 1.3E-99 T 23-04-2016 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 RPE_RS21940 26538569a94730e3e5ded7d613762375 444 Hamap MF_00220_A Dihydroorotase [pyrC]. 9 432 33.817 T 23-04-2016 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 RPE_RS21940 26538569a94730e3e5ded7d613762375 444 ProSitePatterns PS00483 Dihydroorotase signature 2. 303 314 - T 23-04-2016 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 RPE_RS21940 26538569a94730e3e5ded7d613762375 444 PANTHER PTHR11647:SF1 1 437 3.1E-144 T 23-04-2016 RPE_RS21940 26538569a94730e3e5ded7d613762375 444 Gene3D G3DSA:3.20.20.140 70 407 1.8E-97 T 23-04-2016 RPE_RS21940 26538569a94730e3e5ded7d613762375 444 SUPERFAMILY SSF51556 57 368 2.21E-95 T 23-04-2016 IPR032466 Metal-dependent hydrolase RPE_RS21940 26538569a94730e3e5ded7d613762375 444 Pfam PF01979 Amidohydrolase family 54 421 1.1E-22 T 23-04-2016 IPR006680 Amidohydrolase-related GO:0016787 RPE_RS15645 09fc51682311d8def7633505f1001f73 397 PANTHER PTHR11271:SF43 161 354 2.4E-31 T 23-04-2016 RPE_RS15645 09fc51682311d8def7633505f1001f73 397 PANTHER PTHR11271:SF43 21 142 2.4E-31 T 23-04-2016 RPE_RS15645 09fc51682311d8def7633505f1001f73 397 SUPERFAMILY SSF51556 53 175 6.43E-9 T 23-04-2016 IPR032466 Metal-dependent hydrolase RPE_RS15645 09fc51682311d8def7633505f1001f73 397 SUPERFAMILY SSF51556 211 341 6.43E-9 T 23-04-2016 IPR032466 Metal-dependent hydrolase RPE_RS15645 09fc51682311d8def7633505f1001f73 397 PANTHER PTHR11271 161 354 2.4E-31 T 23-04-2016 RPE_RS15645 09fc51682311d8def7633505f1001f73 397 PANTHER PTHR11271 21 142 2.4E-31 T 23-04-2016 RPE_RS15645 09fc51682311d8def7633505f1001f73 397 PIRSF PIRSF038971 2 376 4.1E-135 T 23-04-2016 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399 RPE_RS15645 09fc51682311d8def7633505f1001f73 397 Gene3D G3DSA:2.30.40.10 6 98 1.5E-10 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RPE_RS15645 09fc51682311d8def7633505f1001f73 397 SUPERFAMILY SSF51338 6 53 4.01E-15 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RPE_RS15645 09fc51682311d8def7633505f1001f73 397 SUPERFAMILY SSF51338 342 376 4.01E-15 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RPE_RS15645 09fc51682311d8def7633505f1001f73 397 Pfam PF07969 Amidohydrolase family 88 376 5.4E-8 T 23-04-2016 IPR013108 Amidohydrolase 3 RPE_RS15645 09fc51682311d8def7633505f1001f73 397 Gene3D G3DSA:2.30.40.10 313 358 8.0E-10 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RPE_RS01375 b9fa1513831ef7455c3ec59bc3b0736a 176 PANTHER PTHR11839:SF13 42 162 1.7E-30 T 23-04-2016 RPE_RS01375 b9fa1513831ef7455c3ec59bc3b0736a 176 Gene3D G3DSA:3.90.79.10 4 161 1.2E-27 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS01375 b9fa1513831ef7455c3ec59bc3b0736a 176 Pfam PF00293 NUDIX domain 9 156 4.9E-22 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RPE_RS01375 b9fa1513831ef7455c3ec59bc3b0736a 176 PANTHER PTHR11839 42 162 1.7E-30 T 23-04-2016 RPE_RS01375 b9fa1513831ef7455c3ec59bc3b0736a 176 SUPERFAMILY SSF55811 4 161 7.72E-29 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS01375 b9fa1513831ef7455c3ec59bc3b0736a 176 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 3 166 32.551 T 23-04-2016 IPR022927 RNA pyrophosphohydrolase RppH RPE_RS20120 fd9384733afe73c488451f704f6d579f 665 SUPERFAMILY SSF52540 106 552 1.12E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS20120 fd9384733afe73c488451f704f6d579f 665 PANTHER PTHR37937:SF1 9 569 9.9E-117 T 23-04-2016 RPE_RS20120 fd9384733afe73c488451f704f6d579f 665 Gene3D G3DSA:3.40.50.300 105 210 2.0E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS20120 fd9384733afe73c488451f704f6d579f 665 Gene3D G3DSA:3.40.50.300 349 550 2.0E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS20120 fd9384733afe73c488451f704f6d579f 665 Pfam PF02534 Type IV secretory system Conjugative DNA transfer 113 560 1.1E-99 T 23-04-2016 IPR003688 Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 RPE_RS20120 fd9384733afe73c488451f704f6d579f 665 PANTHER PTHR37937 9 569 9.9E-117 T 23-04-2016 RPE_RS04885 f33a237f989026179f89a6ff0c7a6316 92 Gene3D G3DSA:3.30.160.140 11 78 6.2E-7 T 23-04-2016 IPR009962 Protein of unknown function DUF1488 RPE_RS04885 f33a237f989026179f89a6ff0c7a6316 92 Pfam PF07369 Protein of unknown function (DUF1488) 9 77 1.3E-16 T 23-04-2016 IPR009962 Protein of unknown function DUF1488 RPE_RS04885 f33a237f989026179f89a6ff0c7a6316 92 SUPERFAMILY SSF160272 1 88 4.71E-20 T 23-04-2016 IPR009962 Protein of unknown function DUF1488 RPE_RS12390 687f0a346fa586655b7f30d1a08b0b37 117 SUPERFAMILY SSF47413 9 64 2.31E-11 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS12390 687f0a346fa586655b7f30d1a08b0b37 117 Pfam PF13560 Helix-turn-helix domain 9 64 2.7E-11 T 23-04-2016 RPE_RS12390 687f0a346fa586655b7f30d1a08b0b37 117 SMART SM00530 13 68 5.7E-7 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RPE_RS12390 687f0a346fa586655b7f30d1a08b0b37 117 Gene3D G3DSA:1.10.260.40 4 70 1.4E-13 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS06985 9a052091db07c316a4d08b76a25dfb7e 339 PANTHER PTHR11795 27 337 1.9E-163 T 23-04-2016 RPE_RS06985 9a052091db07c316a4d08b76a25dfb7e 339 Pfam PF02653 Branched-chain amino acid transport system / permease component 49 326 4.9E-34 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RPE_RS06985 9a052091db07c316a4d08b76a25dfb7e 339 PANTHER PTHR11795:SF381 27 337 1.9E-163 T 23-04-2016 RPE_RS16240 b221a0ad514e45de49c65750b8553764 219 SMART SM00965 57 108 6.7E-4 T 23-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 RPE_RS22885 ae14b5bb536754ae1f93dc4bad0693ff 265 Gene3D G3DSA:3.30.1150.10 155 265 5.6E-21 T 23-04-2016 RPE_RS22885 ae14b5bb536754ae1f93dc4bad0693ff 265 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 186 264 5.9E-15 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 RPE_RS22885 ae14b5bb536754ae1f93dc4bad0693ff 265 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 187 265 1.8E-18 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 RPE_RS22885 ae14b5bb536754ae1f93dc4bad0693ff 265 SUPERFAMILY SSF74653 162 265 1.83E-19 T 23-04-2016 RPE_RS19280 e45cbe9b17a8ecab685f1b0a421b6aed 776 SUPERFAMILY SSF56935 95 476 2.17E-86 T 23-04-2016 RPE_RS19280 e45cbe9b17a8ecab685f1b0a421b6aed 776 SUPERFAMILY SSF56935 503 776 2.17E-86 T 23-04-2016 RPE_RS19280 e45cbe9b17a8ecab685f1b0a421b6aed 776 SUPERFAMILY SSF56935 43 59 2.17E-86 T 23-04-2016 RPE_RS19280 e45cbe9b17a8ecab685f1b0a421b6aed 776 Gene3D G3DSA:2.40.170.20 208 776 1.7E-69 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RPE_RS19280 e45cbe9b17a8ecab685f1b0a421b6aed 776 PANTHER PTHR32552 496 556 1.4E-34 T 23-04-2016 RPE_RS19280 e45cbe9b17a8ecab685f1b0a421b6aed 776 PANTHER PTHR32552 11 51 1.4E-34 T 23-04-2016 RPE_RS19280 e45cbe9b17a8ecab685f1b0a421b6aed 776 PANTHER PTHR32552 573 776 1.4E-34 T 23-04-2016 RPE_RS19280 e45cbe9b17a8ecab685f1b0a421b6aed 776 PANTHER PTHR32552 84 473 1.4E-34 T 23-04-2016 RPE_RS19280 e45cbe9b17a8ecab685f1b0a421b6aed 776 Gene3D G3DSA:2.170.130.10 90 207 1.6E-17 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RPE_RS19280 e45cbe9b17a8ecab685f1b0a421b6aed 776 Gene3D G3DSA:2.170.130.10 42 54 1.6E-17 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RPE_RS19280 e45cbe9b17a8ecab685f1b0a421b6aed 776 Pfam PF00593 TonB dependent receptor 513 774 1.4E-28 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RPE_RS19280 e45cbe9b17a8ecab685f1b0a421b6aed 776 Pfam PF07715 TonB-dependent Receptor Plug Domain 96 204 1.9E-12 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RPE_RS22255 e1f6784882f89c900b2a37211592c044 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 226 246 3.2E-32 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22255 e1f6784882f89c900b2a37211592c044 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 3.2E-32 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22255 e1f6784882f89c900b2a37211592c044 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 3.2E-32 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22255 e1f6784882f89c900b2a37211592c044 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 3.2E-32 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22255 e1f6784882f89c900b2a37211592c044 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 3.2E-32 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22255 e1f6784882f89c900b2a37211592c044 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 2.1E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22255 e1f6784882f89c900b2a37211592c044 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 2.1E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22255 e1f6784882f89c900b2a37211592c044 267 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 87 98 2.1E-11 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22255 e1f6784882f89c900b2a37211592c044 267 Gene3D G3DSA:3.40.50.720 1 264 2.7E-82 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS22255 e1f6784882f89c900b2a37211592c044 267 SUPERFAMILY SSF51735 6 264 1.57E-78 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS22255 e1f6784882f89c900b2a37211592c044 267 PANTHER PTHR24321:SF6 2 264 1.6E-54 T 23-04-2016 RPE_RS22255 e1f6784882f89c900b2a37211592c044 267 PANTHER PTHR24321 2 264 1.6E-54 T 23-04-2016 RPE_RS22255 e1f6784882f89c900b2a37211592c044 267 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 22 263 2.3E-64 T 23-04-2016 RPE_RS24155 56ac4675b9f2945bf4ef4776a2f21c4b 544 SUPERFAMILY SSF53383 94 351 2.3E-9 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS24155 56ac4675b9f2945bf4ef4776a2f21c4b 544 Gene3D G3DSA:3.40.640.10 107 148 1.9E-7 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS24155 56ac4675b9f2945bf4ef4776a2f21c4b 544 Gene3D G3DSA:3.40.640.10 181 371 1.9E-7 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS16190 88f1606d67119a1bfa633482b79cdad1 132 SUPERFAMILY SSF54975 1 106 9.48E-33 T 23-04-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 RPE_RS16190 88f1606d67119a1bfa633482b79cdad1 132 Pfam PF04940 Sensors of blue-light using FAD 3 93 2.4E-27 T 23-04-2016 IPR007024 BLUF domain GO:0009882|GO:0071949 RPE_RS16190 88f1606d67119a1bfa633482b79cdad1 132 SMART SM01034 3 94 6.6E-40 T 23-04-2016 IPR007024 BLUF domain GO:0009882|GO:0071949 RPE_RS10240 f00911aa08b7c864333a8b9098ce95de 85 SUPERFAMILY SSF47598 46 84 8.9E-5 T 23-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 RPE_RS10240 f00911aa08b7c864333a8b9098ce95de 85 Pfam PF12441 CopG antitoxin of type II toxin-antitoxin system 5 83 9.2E-38 T 23-04-2016 IPR022148 CopG antitoxin RPE_RS14660 dcb7e3cf4ee8c928e6b869f2befd7bd7 219 PANTHER PTHR11544:SF43 1 219 4.2E-108 T 23-04-2016 RPE_RS14660 dcb7e3cf4ee8c928e6b869f2befd7bd7 219 Gene3D G3DSA:2.40.50.140 54 116 5.3E-20 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS14660 dcb7e3cf4ee8c928e6b869f2befd7bd7 219 Gene3D G3DSA:2.40.50.140 148 208 8.5E-18 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS14660 dcb7e3cf4ee8c928e6b869f2befd7bd7 219 SUPERFAMILY SSF50249 53 118 1.61E-17 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS14660 dcb7e3cf4ee8c928e6b869f2befd7bd7 219 PRINTS PR00050 Cold shock protein signature 55 70 2.1E-6 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RPE_RS14660 dcb7e3cf4ee8c928e6b869f2befd7bd7 219 PRINTS PR00050 Cold shock protein signature 91 109 2.1E-6 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RPE_RS14660 dcb7e3cf4ee8c928e6b869f2befd7bd7 219 PRINTS PR00050 Cold shock protein signature 76 85 2.1E-6 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RPE_RS14660 dcb7e3cf4ee8c928e6b869f2befd7bd7 219 SUPERFAMILY SSF50249 145 209 9.0E-16 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS14660 dcb7e3cf4ee8c928e6b869f2befd7bd7 219 PANTHER PTHR11544 1 219 4.2E-108 T 23-04-2016 RPE_RS14660 dcb7e3cf4ee8c928e6b869f2befd7bd7 219 SMART SM00357 146 210 9.5E-10 T 23-04-2016 IPR011129 Cold shock protein GO:0003676 RPE_RS14660 dcb7e3cf4ee8c928e6b869f2befd7bd7 219 SMART SM00357 54 118 9.2E-12 T 23-04-2016 IPR011129 Cold shock protein GO:0003676 RPE_RS14660 dcb7e3cf4ee8c928e6b869f2befd7bd7 219 Pfam PF00313 'Cold-shock' DNA-binding domain 146 208 2.1E-13 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RPE_RS14660 dcb7e3cf4ee8c928e6b869f2befd7bd7 219 Pfam PF00313 'Cold-shock' DNA-binding domain 54 116 5.6E-14 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RPE_RS13700 55f073030551c75f4f3f14cf1fd18b26 401 SUPERFAMILY SSF161098 190 381 9.29E-28 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS13700 55f073030551c75f4f3f14cf1fd18b26 401 PANTHER PTHR30085:SF1 1 179 4.0E-157 T 23-04-2016 RPE_RS13700 55f073030551c75f4f3f14cf1fd18b26 401 PANTHER PTHR30085:SF1 258 399 4.0E-157 T 23-04-2016 RPE_RS13700 55f073030551c75f4f3f14cf1fd18b26 401 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 90 153 1.2E-14 T 23-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 RPE_RS13700 55f073030551c75f4f3f14cf1fd18b26 401 Gene3D G3DSA:1.10.3720.10 88 154 5.6E-12 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS13700 55f073030551c75f4f3f14cf1fd18b26 401 Gene3D G3DSA:1.10.3720.10 191 395 2.2E-34 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS13700 55f073030551c75f4f3f14cf1fd18b26 401 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 110 389 2.7E-10 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS13700 55f073030551c75f4f3f14cf1fd18b26 401 PANTHER PTHR30085 1 179 4.0E-157 T 23-04-2016 RPE_RS13700 55f073030551c75f4f3f14cf1fd18b26 401 PANTHER PTHR30085 258 399 4.0E-157 T 23-04-2016 RPE_RS13700 55f073030551c75f4f3f14cf1fd18b26 401 SUPERFAMILY SSF161098 90 158 5.63E-11 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS22235 747b521bf6927f3eccfe4296dbfaab3b 72 Gene3D G3DSA:2.30.30.40 4 72 1.3E-30 T 23-04-2016 RPE_RS22235 747b521bf6927f3eccfe4296dbfaab3b 72 PANTHER PTHR30305 5 72 9.8E-26 T 23-04-2016 RPE_RS22235 747b521bf6927f3eccfe4296dbfaab3b 72 SUPERFAMILY SSF82057 3 72 2.61E-25 T 23-04-2016 RPE_RS22235 747b521bf6927f3eccfe4296dbfaab3b 72 Pfam PF03831 PhnA domain 5 72 3.7E-29 T 23-04-2016 IPR013988 PhnA protein, C-terminal RPE_RS22235 747b521bf6927f3eccfe4296dbfaab3b 72 PANTHER PTHR30305:SF3 5 72 9.8E-26 T 23-04-2016 RPE_RS22295 0d37e6c42d8536b5129305848c54f56f 405 SUPERFAMILY SSF52172 24 108 1.96E-6 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS22295 0d37e6c42d8536b5129305848c54f56f 405 SMART SM00052 148 391 4.1E-28 T 23-04-2016 IPR001633 EAL domain RPE_RS22295 0d37e6c42d8536b5129305848c54f56f 405 PANTHER PTHR33121:SF13 153 395 6.9E-56 T 23-04-2016 RPE_RS22295 0d37e6c42d8536b5129305848c54f56f 405 Gene3D G3DSA:3.20.20.450 155 395 9.9E-47 T 23-04-2016 IPR001633 EAL domain RPE_RS22295 0d37e6c42d8536b5129305848c54f56f 405 PANTHER PTHR33121 153 395 6.9E-56 T 23-04-2016 RPE_RS22295 0d37e6c42d8536b5129305848c54f56f 405 SUPERFAMILY SSF141868 156 396 1.19E-47 T 23-04-2016 IPR001633 EAL domain RPE_RS22295 0d37e6c42d8536b5129305848c54f56f 405 Pfam PF00563 EAL domain 155 386 9.9E-44 T 23-04-2016 IPR001633 EAL domain RPE_RS12695 01e5bb8a29c3dd1bccc2f3f599d36c8f 341 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 11 336 23.743 T 23-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 RPE_RS12695 01e5bb8a29c3dd1bccc2f3f599d36c8f 341 Pfam PF00146 NADH dehydrogenase 20 329 8.0E-118 T 23-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 RPE_RS12695 01e5bb8a29c3dd1bccc2f3f599d36c8f 341 PANTHER PTHR11432 5 341 1.9E-160 T 23-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 RPE_RS12695 01e5bb8a29c3dd1bccc2f3f599d36c8f 341 PANTHER PTHR11432:SF3 5 341 1.9E-160 T 23-04-2016 RPE_RS12695 01e5bb8a29c3dd1bccc2f3f599d36c8f 341 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 217 230 - T 23-04-2016 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 RPE_RS02215 be7f3010ee112b9f29c4d7b687d75b26 401 SUPERFAMILY SSF89796 8 394 5.89E-132 T 23-04-2016 IPR023606 CoA-transferase family III domain RPE_RS02215 be7f3010ee112b9f29c4d7b687d75b26 401 Pfam PF02515 CoA-transferase family III 11 371 3.7E-123 T 23-04-2016 IPR003673 CoA-transferase family III GO:0003824 RPE_RS02215 be7f3010ee112b9f29c4d7b687d75b26 401 PANTHER PTHR24023:SF593 83 381 5.0E-25 T 23-04-2016 RPE_RS02215 be7f3010ee112b9f29c4d7b687d75b26 401 Gene3D G3DSA:3.40.50.10540 8 220 3.2E-110 T 23-04-2016 IPR023606 CoA-transferase family III domain RPE_RS02215 be7f3010ee112b9f29c4d7b687d75b26 401 Gene3D G3DSA:3.40.50.10540 309 394 3.2E-110 T 23-04-2016 IPR023606 CoA-transferase family III domain RPE_RS02215 be7f3010ee112b9f29c4d7b687d75b26 401 Gene3D G3DSA:3.30.1540.10 227 308 5.4E-29 T 23-04-2016 RPE_RS02215 be7f3010ee112b9f29c4d7b687d75b26 401 PANTHER PTHR24023 83 381 5.0E-25 T 23-04-2016 RPE_RS00275 d2086822758318fffb248d8f8044a7a8 469 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 297 434 1.7E-24 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RPE_RS00275 d2086822758318fffb248d8f8044a7a8 469 Gene3D G3DSA:3.30.70.1230 297 434 5.5E-32 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RPE_RS00275 d2086822758318fffb248d8f8044a7a8 469 SUPERFAMILY SSF55073 298 468 4.87E-40 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS00275 d2086822758318fffb248d8f8044a7a8 469 PANTHER PTHR11920 273 426 1.3E-14 T 23-04-2016 RPE_RS00275 d2086822758318fffb248d8f8044a7a8 469 PANTHER PTHR11920:SF341 273 426 1.3E-14 T 23-04-2016 RPE_RS00275 d2086822758318fffb248d8f8044a7a8 469 SMART SM00044 252 451 8.4E-13 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RPE_RS01885 6445e242e689b2d789a5e193fdce08b1 161 Gene3D G3DSA:3.10.420.10 10 158 2.5E-61 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RPE_RS01885 6445e242e689b2d789a5e193fdce08b1 161 PANTHER PTHR36918 1 158 4.2E-72 T 23-04-2016 RPE_RS01885 6445e242e689b2d789a5e193fdce08b1 161 Pfam PF02556 Preprotein translocase subunit SecB 13 150 1.0E-54 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RPE_RS01885 6445e242e689b2d789a5e193fdce08b1 161 Hamap MF_00821 Protein-export protein SecB [secB]. 1 152 31.729 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RPE_RS01885 6445e242e689b2d789a5e193fdce08b1 161 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 80 100 3.0E-28 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RPE_RS01885 6445e242e689b2d789a5e193fdce08b1 161 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 130 148 3.0E-28 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RPE_RS01885 6445e242e689b2d789a5e193fdce08b1 161 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 19 36 3.0E-28 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RPE_RS01885 6445e242e689b2d789a5e193fdce08b1 161 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 104 126 3.0E-28 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RPE_RS01885 6445e242e689b2d789a5e193fdce08b1 161 PANTHER PTHR36918:SF1 1 158 4.2E-72 T 23-04-2016 RPE_RS01885 6445e242e689b2d789a5e193fdce08b1 161 SUPERFAMILY SSF54611 6 148 2.18E-50 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RPE_RS01885 6445e242e689b2d789a5e193fdce08b1 161 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 15 153 3.7E-42 T 23-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RPE_RS12400 919684458639f232609bb74c29febbd1 465 Gene3D G3DSA:3.30.420.10 2 192 7.2E-45 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RPE_RS12400 919684458639f232609bb74c29febbd1 465 SMART SM00479 2 195 5.9E-5 T 23-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III RPE_RS12400 919684458639f232609bb74c29febbd1 465 PANTHER PTHR30231:SF4 3 208 5.4E-19 T 23-04-2016 RPE_RS12400 919684458639f232609bb74c29febbd1 465 SUPERFAMILY SSF53098 1 436 5.76E-82 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RPE_RS12400 919684458639f232609bb74c29febbd1 465 Pfam PF00929 Exonuclease 4 185 3.0E-13 T 23-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III RPE_RS12400 919684458639f232609bb74c29febbd1 465 Pfam PF08411 Exonuclease C-terminal 225 383 5.4E-12 T 23-04-2016 IPR013620 Exonuclease C-terminal GO:0006281|GO:0008852 RPE_RS12400 919684458639f232609bb74c29febbd1 465 PANTHER PTHR30231 3 208 5.4E-19 T 23-04-2016 RPE_RS12400 919684458639f232609bb74c29febbd1 465 PIRSF PIRSF000977 1 465 1.3E-114 T 23-04-2016 IPR023607 Exodeoxyribonuclease I GO:0004529 RPE_RS08515 18f74275ff877c56a599f8e432a6a45a 271 Gene3D G3DSA:3.40.1640.10 17 172 4.6E-65 T 23-04-2016 RPE_RS08515 18f74275ff877c56a599f8e432a6a45a 271 Hamap MF_01830 UPF0317 protein . 16 270 53.097 T 23-04-2016 IPR016938 Uncharacterised protein family UPF0317 RPE_RS08515 18f74275ff877c56a599f8e432a6a45a 271 PIRSF PIRSF029755 6 271 4.7E-123 T 23-04-2016 IPR016938 Uncharacterised protein family UPF0317 RPE_RS08515 18f74275ff877c56a599f8e432a6a45a 271 PANTHER PTHR32022 2 269 7.8E-149 T 23-04-2016 RPE_RS08515 18f74275ff877c56a599f8e432a6a45a 271 Pfam PF07286 Protein of unknown function (DUF1445) 120 262 2.4E-65 T 23-04-2016 IPR009906 Protein of unknown function DUF1445 RPE_RS08515 18f74275ff877c56a599f8e432a6a45a 271 SUPERFAMILY SSF160920 18 264 4.32E-112 T 23-04-2016 RPE_RS11835 95bfd0b4e948ff0da03d5f22eb2200d1 587 Gene3D G3DSA:3.30.70.270 412 577 5.0E-50 T 23-04-2016 RPE_RS11835 95bfd0b4e948ff0da03d5f22eb2200d1 587 SMART SM00304 341 393 3.3E-6 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS11835 95bfd0b4e948ff0da03d5f22eb2200d1 587 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 407 570 1.2E-38 T 23-04-2016 IPR000160 GGDEF domain RPE_RS11835 95bfd0b4e948ff0da03d5f22eb2200d1 587 SUPERFAMILY SSF55073 415 572 2.82E-44 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS11835 95bfd0b4e948ff0da03d5f22eb2200d1 587 SMART SM00267 399 571 3.2E-56 T 23-04-2016 IPR000160 GGDEF domain RPE_RS11835 95bfd0b4e948ff0da03d5f22eb2200d1 587 Pfam PF00990 Diguanylate cyclase, GGDEF domain 410 567 9.0E-40 T 23-04-2016 IPR000160 GGDEF domain RPE_RS11835 95bfd0b4e948ff0da03d5f22eb2200d1 587 PANTHER PTHR32089 9 422 3.8E-73 T 23-04-2016 RPE_RS11835 95bfd0b4e948ff0da03d5f22eb2200d1 587 Pfam PF00672 HAMP domain 322 389 8.0E-9 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS11835 95bfd0b4e948ff0da03d5f22eb2200d1 587 Gene3D G3DSA:3.30.450.20 183 311 4.0E-4 T 23-04-2016 RPE_RS11835 95bfd0b4e948ff0da03d5f22eb2200d1 587 PANTHER PTHR32089:SF27 9 422 3.8E-73 T 23-04-2016 RPE_RS13830 70a18b3a3c49aa5dd1174862e15f66d9 204 Gene3D G3DSA:3.90.950.20 4 162 3.4E-57 T 23-04-2016 IPR008136 CinA, C-terminal RPE_RS13830 70a18b3a3c49aa5dd1174862e15f66d9 204 PANTHER PTHR13939 1 170 1.2E-68 T 23-04-2016 RPE_RS13830 70a18b3a3c49aa5dd1174862e15f66d9 204 SUPERFAMILY SSF142433 4 162 8.5E-56 T 23-04-2016 IPR008136 CinA, C-terminal RPE_RS13830 70a18b3a3c49aa5dd1174862e15f66d9 204 Pfam PF02464 Competence-damaged protein 8 161 5.4E-57 T 23-04-2016 IPR008136 CinA, C-terminal RPE_RS13830 70a18b3a3c49aa5dd1174862e15f66d9 204 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 16 160 1.0E-47 T 23-04-2016 IPR008136 CinA, C-terminal RPE_RS10135 d10deefa80225801bcd7499ebf1d17f3 402 Gene3D G3DSA:3.40.47.10 15 268 7.5E-27 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS10135 d10deefa80225801bcd7499ebf1d17f3 402 SUPERFAMILY SSF53901 15 265 4.39E-30 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS10135 d10deefa80225801bcd7499ebf1d17f3 402 SUPERFAMILY SSF53901 236 367 2.3E-12 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS10135 d10deefa80225801bcd7499ebf1d17f3 402 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 16 257 6.3E-17 T 23-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal RPE_RS17200 12b19f0a1363a21ab43e7423b86c805f 292 Hamap MF_00397 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase [citG]. 18 292 155.263 T 23-04-2016 IPR017551 Triphosphoribosyl-dephospho-CoA synthase CitG GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 RPE_RS17200 12b19f0a1363a21ab43e7423b86c805f 292 Pfam PF01874 ATP:dephospho-CoA triphosphoribosyl transferase 19 286 4.4E-77 T 23-04-2016 IPR002736 Triphosphoribosyl-dephospho-CoA protein GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 RPE_RS17200 12b19f0a1363a21ab43e7423b86c805f 292 PANTHER PTHR30201 3 287 2.9E-82 T 23-04-2016 RPE_RS17200 12b19f0a1363a21ab43e7423b86c805f 292 TIGRFAM TIGR03125 citrate_citG: triphosphoribosyl-dephospho-CoA synthase CitG 18 287 5.1E-94 T 23-04-2016 IPR017551 Triphosphoribosyl-dephospho-CoA synthase CitG GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 RPE_RS06155 6c2e7b8f062266a987681d3ad86a5e01 272 Gene3D G3DSA:1.10.3720.10 70 262 4.2E-19 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS06155 6c2e7b8f062266a987681d3ad86a5e01 272 PANTHER PTHR30151 71 265 5.6E-46 T 23-04-2016 RPE_RS06155 6c2e7b8f062266a987681d3ad86a5e01 272 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 94 261 6.6E-18 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS06155 6c2e7b8f062266a987681d3ad86a5e01 272 SUPERFAMILY SSF161098 70 255 6.41E-26 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS06155 6c2e7b8f062266a987681d3ad86a5e01 272 PANTHER PTHR30151:SF0 71 265 5.6E-46 T 23-04-2016 RPE_RS07105 accfa579ebf6873b152309648ad0dd51 186 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 133 166 1.1E-9 T 23-04-2016 IPR001451 Hexapeptide repeat RPE_RS07105 accfa579ebf6873b152309648ad0dd51 186 SUPERFAMILY SSF51161 3 183 1.94E-52 T 23-04-2016 IPR011004 Trimeric LpxA-like RPE_RS07105 accfa579ebf6873b152309648ad0dd51 186 PANTHER PTHR23416 3 184 2.1E-74 T 23-04-2016 RPE_RS07105 accfa579ebf6873b152309648ad0dd51 186 Pfam PF12464 Maltose acetyltransferase 8 59 1.3E-11 T 23-04-2016 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 RPE_RS07105 accfa579ebf6873b152309648ad0dd51 186 SMART SM01266 6 60 4.4E-16 T 23-04-2016 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 RPE_RS07105 accfa579ebf6873b152309648ad0dd51 186 Gene3D G3DSA:2.160.10.10 3 184 9.9E-56 T 23-04-2016 RPE_RS07105 accfa579ebf6873b152309648ad0dd51 186 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 140 168 - T 23-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 RPE_RS07105 accfa579ebf6873b152309648ad0dd51 186 PANTHER PTHR23416:SF58 3 184 2.1E-74 T 23-04-2016 RPE_RS07105 accfa579ebf6873b152309648ad0dd51 186 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 76 111 0.11 T 23-04-2016 IPR001451 Hexapeptide repeat RPE_RS08345 6458ae536edc89bea25813fa70dc08e4 280 PANTHER PTHR11908:SF68 3 264 9.7E-77 T 23-04-2016 RPE_RS08345 6458ae536edc89bea25813fa70dc08e4 280 SMART SM01092 171 264 1.8E-18 T 23-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal RPE_RS08345 6458ae536edc89bea25813fa70dc08e4 280 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 3 167 6.1E-50 T 23-04-2016 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 RPE_RS08345 6458ae536edc89bea25813fa70dc08e4 280 Gene3D G3DSA:3.30.465.10 57 166 3.6E-33 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RPE_RS08345 6458ae536edc89bea25813fa70dc08e4 280 SUPERFAMILY SSF55447 169 264 1.96E-18 T 23-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal RPE_RS08345 6458ae536edc89bea25813fa70dc08e4 280 PANTHER PTHR11908 3 264 9.7E-77 T 23-04-2016 RPE_RS08345 6458ae536edc89bea25813fa70dc08e4 280 SUPERFAMILY SSF56176 1 167 7.85E-53 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RPE_RS08345 6458ae536edc89bea25813fa70dc08e4 280 Gene3D G3DSA:3.30.43.10 1 51 3.5E-21 T 23-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 RPE_RS08345 6458ae536edc89bea25813fa70dc08e4 280 Gene3D G3DSA:3.30.390.50 171 264 1.0E-15 T 23-04-2016 RPE_RS19820 6c5723bfd43afc07948558c1d15496ca 321 Gene3D G3DSA:3.50.50.60 5 111 1.0E-34 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS19820 6c5723bfd43afc07948558c1d15496ca 321 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 299 1.9E-54 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS19820 6c5723bfd43afc07948558c1d15496ca 321 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 2.4E-40 T 23-04-2016 RPE_RS19820 6c5723bfd43afc07948558c1d15496ca 321 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 236 252 2.4E-40 T 23-04-2016 RPE_RS19820 6c5723bfd43afc07948558c1d15496ca 321 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 107 125 2.4E-40 T 23-04-2016 RPE_RS19820 6c5723bfd43afc07948558c1d15496ca 321 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 149 167 2.4E-40 T 23-04-2016 RPE_RS19820 6c5723bfd43afc07948558c1d15496ca 321 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 263 285 2.4E-40 T 23-04-2016 RPE_RS19820 6c5723bfd43afc07948558c1d15496ca 321 PANTHER PTHR22912:SF48 1 313 1.8E-158 T 23-04-2016 RPE_RS19820 6c5723bfd43afc07948558c1d15496ca 321 Gene3D G3DSA:3.50.50.60 112 304 2.0E-38 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS19820 6c5723bfd43afc07948558c1d15496ca 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 108 116 4.7E-76 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RPE_RS19820 6c5723bfd43afc07948558c1d15496ca 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 238 259 4.7E-76 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RPE_RS19820 6c5723bfd43afc07948558c1d15496ca 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 41 56 4.7E-76 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RPE_RS19820 6c5723bfd43afc07948558c1d15496ca 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 62 72 4.7E-76 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RPE_RS19820 6c5723bfd43afc07948558c1d15496ca 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 273 291 4.7E-76 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RPE_RS19820 6c5723bfd43afc07948558c1d15496ca 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 197 213 4.7E-76 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RPE_RS19820 6c5723bfd43afc07948558c1d15496ca 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 130 142 4.7E-76 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RPE_RS19820 6c5723bfd43afc07948558c1d15496ca 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 145 169 4.7E-76 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RPE_RS19820 6c5723bfd43afc07948558c1d15496ca 321 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 4.7E-76 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RPE_RS19820 6c5723bfd43afc07948558c1d15496ca 321 SUPERFAMILY SSF51905 2 309 5.46E-56 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS19820 6c5723bfd43afc07948558c1d15496ca 321 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 137 157 - T 23-04-2016 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 RPE_RS19820 6c5723bfd43afc07948558c1d15496ca 321 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 8 310 2.9E-123 T 23-04-2016 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00240+1.8.1.9|KEGG: 00450+1.8.1.9 RPE_RS19820 6c5723bfd43afc07948558c1d15496ca 321 PANTHER PTHR22912 1 313 1.8E-158 T 23-04-2016 RPE_RS23210 1f9fc327cd108c5f6ff521c4f6a26650 551 Pfam PF07690 Major Facilitator Superfamily 39 439 1.3E-39 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RPE_RS23210 1f9fc327cd108c5f6ff521c4f6a26650 551 PANTHER PTHR11360:SF135 92 310 3.7E-142 T 23-04-2016 RPE_RS23210 1f9fc327cd108c5f6ff521c4f6a26650 551 PANTHER PTHR11360:SF135 27 69 3.7E-142 T 23-04-2016 RPE_RS23210 1f9fc327cd108c5f6ff521c4f6a26650 551 PANTHER PTHR11360:SF135 332 496 3.7E-142 T 23-04-2016 RPE_RS23210 1f9fc327cd108c5f6ff521c4f6a26650 551 PANTHER PTHR11360 92 310 3.7E-142 T 23-04-2016 RPE_RS23210 1f9fc327cd108c5f6ff521c4f6a26650 551 PANTHER PTHR11360 27 69 3.7E-142 T 23-04-2016 RPE_RS23210 1f9fc327cd108c5f6ff521c4f6a26650 551 PANTHER PTHR11360 332 496 3.7E-142 T 23-04-2016 RPE_RS23210 1f9fc327cd108c5f6ff521c4f6a26650 551 SUPERFAMILY SSF103473 29 487 5.75E-44 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS23210 1f9fc327cd108c5f6ff521c4f6a26650 551 Gene3D G3DSA:1.20.1250.20 276 486 7.2E-11 T 23-04-2016 RPE_RS23210 1f9fc327cd108c5f6ff521c4f6a26650 551 Gene3D G3DSA:1.20.1250.20 74 240 3.7E-16 T 23-04-2016 RPE_RS09750 d89727bb63bf9d73892b8ec9cd06acff 568 Pfam PF00672 HAMP domain 198 265 1.1E-9 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS09750 d89727bb63bf9d73892b8ec9cd06acff 568 SUPERFAMILY SSF58104 245 272 9.68E-62 T 23-04-2016 RPE_RS09750 d89727bb63bf9d73892b8ec9cd06acff 568 SUPERFAMILY SSF58104 314 561 9.68E-62 T 23-04-2016 RPE_RS09750 d89727bb63bf9d73892b8ec9cd06acff 568 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 383 561 1.2E-35 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS09750 d89727bb63bf9d73892b8ec9cd06acff 568 SMART SM00283 304 562 1.0E-46 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS09750 d89727bb63bf9d73892b8ec9cd06acff 568 PANTHER PTHR32089 286 565 3.6E-172 T 23-04-2016 RPE_RS09750 d89727bb63bf9d73892b8ec9cd06acff 568 PANTHER PTHR32089 179 252 3.6E-172 T 23-04-2016 RPE_RS09750 d89727bb63bf9d73892b8ec9cd06acff 568 SMART SM00304 217 270 8.9E-6 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS09750 d89727bb63bf9d73892b8ec9cd06acff 568 Gene3D G3DSA:1.10.287.950 325 531 7.5E-48 T 23-04-2016 RPE_RS09750 d89727bb63bf9d73892b8ec9cd06acff 568 PANTHER PTHR32089:SF40 286 565 3.6E-172 T 23-04-2016 RPE_RS09750 d89727bb63bf9d73892b8ec9cd06acff 568 PANTHER PTHR32089:SF40 179 252 3.6E-172 T 23-04-2016 RPE_RS09750 d89727bb63bf9d73892b8ec9cd06acff 568 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 421 450 5.7E-7 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS09750 d89727bb63bf9d73892b8ec9cd06acff 568 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 469 498 5.7E-7 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS09750 d89727bb63bf9d73892b8ec9cd06acff 568 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 311 340 5.7E-7 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS04080 1a29f022f8540bc5d92e4d0cd9a34f5f 497 PANTHER PTHR30250 4 494 8.6E-40 T 23-04-2016 RPE_RS04080 1a29f022f8540bc5d92e4d0cd9a34f5f 497 Pfam PF13440 Polysaccharide biosynthesis protein 38 330 4.3E-71 T 23-04-2016 RPE_RS01530 507a360b452d563c372ea530b84a5167 856 Pfam PF02687 FtsX-like permease family 277 388 2.2E-14 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 RPE_RS01530 507a360b452d563c372ea530b84a5167 856 Pfam PF02687 FtsX-like permease family 737 849 8.8E-9 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 RPE_RS01530 507a360b452d563c372ea530b84a5167 856 PANTHER PTHR30287 12 856 1.3E-130 T 23-04-2016 RPE_RS24730 0d999d00afc5619a1c6306ae69784445 670 SUPERFAMILY SSF48452 17 180 5.81E-25 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS24730 0d999d00afc5619a1c6306ae69784445 670 Gene3D G3DSA:1.25.40.10 487 663 1.8E-31 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS24730 0d999d00afc5619a1c6306ae69784445 670 Gene3D G3DSA:1.25.40.10 4 179 2.9E-28 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS24730 0d999d00afc5619a1c6306ae69784445 670 SMART SM00028 19 52 21.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS24730 0d999d00afc5619a1c6306ae69784445 670 SMART SM00028 554 587 17.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS24730 0d999d00afc5619a1c6306ae69784445 670 SMART SM00028 87 120 3.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS24730 0d999d00afc5619a1c6306ae69784445 670 SMART SM00028 53 86 0.17 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS24730 0d999d00afc5619a1c6306ae69784445 670 SMART SM00028 623 656 4.5 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS24730 0d999d00afc5619a1c6306ae69784445 670 SMART SM00028 520 553 0.0062 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS24730 0d999d00afc5619a1c6306ae69784445 670 SMART SM00028 121 154 290.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS24730 0d999d00afc5619a1c6306ae69784445 670 SMART SM00028 588 621 0.94 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS24730 0d999d00afc5619a1c6306ae69784445 670 Gene3D G3DSA:3.40.50.2000 380 443 3.1E-12 T 23-04-2016 RPE_RS24730 0d999d00afc5619a1c6306ae69784445 670 SUPERFAMILY SSF48452 487 659 1.61E-27 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS24730 0d999d00afc5619a1c6306ae69784445 670 Pfam PF13432 Tetratricopeptide repeat 128 174 0.0074 T 23-04-2016 RPE_RS24730 0d999d00afc5619a1c6306ae69784445 670 Pfam PF13432 Tetratricopeptide repeat 525 588 4.7E-7 T 23-04-2016 RPE_RS24730 0d999d00afc5619a1c6306ae69784445 670 Pfam PF13432 Tetratricopeptide repeat 58 120 3.6E-5 T 23-04-2016 RPE_RS24730 0d999d00afc5619a1c6306ae69784445 670 Pfam PF13181 Tetratricopeptide repeat 623 655 0.13 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS24730 0d999d00afc5619a1c6306ae69784445 670 PANTHER PTHR23083 474 668 1.2E-43 T 23-04-2016 RPE_RS24730 0d999d00afc5619a1c6306ae69784445 670 PANTHER PTHR23083 4 183 1.2E-43 T 23-04-2016 RPE_RS24730 0d999d00afc5619a1c6306ae69784445 670 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 380 421 1.6E-5 T 23-04-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 RPE_RS24730 0d999d00afc5619a1c6306ae69784445 670 SUPERFAMILY SSF53756 207 444 8.16E-23 T 23-04-2016 RPE_RS08340 2099d1f539e965fe01ea6360163c7e50 161 SUPERFAMILY SSF54292 3 79 3.01E-24 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RPE_RS08340 2099d1f539e965fe01ea6360163c7e50 161 PANTHER PTHR11908:SF66 1 146 2.3E-43 T 23-04-2016 RPE_RS08340 2099d1f539e965fe01ea6360163c7e50 161 PANTHER PTHR11908 1 146 2.3E-43 T 23-04-2016 RPE_RS08340 2099d1f539e965fe01ea6360163c7e50 161 Gene3D G3DSA:1.10.150.120 76 155 4.0E-33 T 23-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RPE_RS08340 2099d1f539e965fe01ea6360163c7e50 161 SUPERFAMILY SSF47741 86 156 1.83E-30 T 23-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RPE_RS08340 2099d1f539e965fe01ea6360163c7e50 161 Pfam PF01799 [2Fe-2S] binding domain 74 148 2.3E-30 T 23-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RPE_RS08340 2099d1f539e965fe01ea6360163c7e50 161 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 7 58 1.1E-6 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RPE_RS08340 2099d1f539e965fe01ea6360163c7e50 161 Gene3D G3DSA:3.10.20.30 2 75 2.1E-29 T 23-04-2016 IPR012675 Beta-grasp domain RPE_RS10315 18bfc4fcbe60835b625f1eea1310cd92 675 SUPERFAMILY SSF58104 393 668 7.46E-61 T 23-04-2016 RPE_RS10315 18bfc4fcbe60835b625f1eea1310cd92 675 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 477 668 3.5E-36 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS10315 18bfc4fcbe60835b625f1eea1310cd92 675 Gene3D G3DSA:1.10.287.950 432 637 2.2E-47 T 23-04-2016 RPE_RS10315 18bfc4fcbe60835b625f1eea1310cd92 675 PANTHER PTHR32089 297 359 6.7E-177 T 23-04-2016 RPE_RS10315 18bfc4fcbe60835b625f1eea1310cd92 675 PANTHER PTHR32089 393 672 6.7E-177 T 23-04-2016 RPE_RS10315 18bfc4fcbe60835b625f1eea1310cd92 675 SUPERFAMILY SSF158472 325 370 1.05E-6 T 23-04-2016 RPE_RS10315 18bfc4fcbe60835b625f1eea1310cd92 675 PANTHER PTHR32089:SF40 297 359 6.7E-177 T 23-04-2016 RPE_RS10315 18bfc4fcbe60835b625f1eea1310cd92 675 PANTHER PTHR32089:SF40 393 672 6.7E-177 T 23-04-2016 RPE_RS10315 18bfc4fcbe60835b625f1eea1310cd92 675 SMART SM00283 415 669 5.9E-49 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS22875 fe54381caab0c81941e810e28201e672 302 PANTHER PTHR30572:SF11 70 290 5.1E-53 T 23-04-2016 RPE_RS22875 fe54381caab0c81941e810e28201e672 302 PANTHER PTHR30572 70 290 5.1E-53 T 23-04-2016 RPE_RS22875 fe54381caab0c81941e810e28201e672 302 TIGRFAM TIGR02797 exbB: tonB-system energizer ExbB 79 287 1.6E-95 T 23-04-2016 IPR014164 TonB-system energizer ExbB type-1 GO:0006810|GO:0016020 RPE_RS22875 fe54381caab0c81941e810e28201e672 302 Pfam PF01618 MotA/TolQ/ExbB proton channel family 172 269 1.4E-32 T 23-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 RPE_RS16735 c37948ef923160bd256b45fca03f4043 489 Gene3D G3DSA:3.40.50.300 68 278 4.5E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16735 c37948ef923160bd256b45fca03f4043 489 TIGRFAM TIGR00416 sms: DNA repair protein RadA 2 434 5.1E-165 T 23-04-2016 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 RPE_RS16735 c37948ef923160bd256b45fca03f4043 489 Gene3D G3DSA:3.30.230.10 285 432 1.5E-30 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RPE_RS16735 c37948ef923160bd256b45fca03f4043 489 PANTHER PTHR32472:SF10 8 432 2.0E-183 T 23-04-2016 RPE_RS16735 c37948ef923160bd256b45fca03f4043 489 PRINTS PR01874 DNA repair protein radA signature 82 110 3.0E-89 T 23-04-2016 RPE_RS16735 c37948ef923160bd256b45fca03f4043 489 PRINTS PR01874 DNA repair protein radA signature 11 35 3.0E-89 T 23-04-2016 RPE_RS16735 c37948ef923160bd256b45fca03f4043 489 PRINTS PR01874 DNA repair protein radA signature 214 242 3.0E-89 T 23-04-2016 RPE_RS16735 c37948ef923160bd256b45fca03f4043 489 PRINTS PR01874 DNA repair protein radA signature 323 346 3.0E-89 T 23-04-2016 RPE_RS16735 c37948ef923160bd256b45fca03f4043 489 PRINTS PR01874 DNA repair protein radA signature 249 275 3.0E-89 T 23-04-2016 RPE_RS16735 c37948ef923160bd256b45fca03f4043 489 PRINTS PR01874 DNA repair protein radA signature 124 141 3.0E-89 T 23-04-2016 RPE_RS16735 c37948ef923160bd256b45fca03f4043 489 PRINTS PR01874 DNA repair protein radA signature 175 199 3.0E-89 T 23-04-2016 RPE_RS16735 c37948ef923160bd256b45fca03f4043 489 SUPERFAMILY SSF54211 256 270 5.69E-36 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RPE_RS16735 c37948ef923160bd256b45fca03f4043 489 SUPERFAMILY SSF54211 304 432 5.69E-36 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RPE_RS16735 c37948ef923160bd256b45fca03f4043 489 SUPERFAMILY SSF52540 69 293 2.07E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16735 c37948ef923160bd256b45fca03f4043 489 Pfam PF13541 Subunit ChlI of Mg-chelatase 345 430 5.7E-8 T 23-04-2016 RPE_RS16735 c37948ef923160bd256b45fca03f4043 489 Pfam PF13481 AAA domain 71 223 3.4E-17 T 23-04-2016 RPE_RS16735 c37948ef923160bd256b45fca03f4043 489 PANTHER PTHR32472 8 432 2.0E-183 T 23-04-2016 RPE_RS16735 c37948ef923160bd256b45fca03f4043 489 SMART SM00382 90 245 5.2E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS07430 fe081bc9174d6ad65cdc9bfcb35b7af0 106 PRINTS PR00355 Adrenodoxin signature 82 90 2.3E-9 T 23-04-2016 IPR001055 Adrenodoxin GO:0009055|GO:0051537 RPE_RS07430 fe081bc9174d6ad65cdc9bfcb35b7af0 106 PRINTS PR00355 Adrenodoxin signature 40 50 2.3E-9 T 23-04-2016 IPR001055 Adrenodoxin GO:0009055|GO:0051537 RPE_RS07430 fe081bc9174d6ad65cdc9bfcb35b7af0 106 PRINTS PR00355 Adrenodoxin signature 59 73 2.3E-9 T 23-04-2016 IPR001055 Adrenodoxin GO:0009055|GO:0051537 RPE_RS07430 fe081bc9174d6ad65cdc9bfcb35b7af0 106 Gene3D G3DSA:3.10.20.30 1 102 2.0E-41 T 23-04-2016 IPR012675 Beta-grasp domain RPE_RS07430 fe081bc9174d6ad65cdc9bfcb35b7af0 106 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 40 50 - T 23-04-2016 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 RPE_RS07430 fe081bc9174d6ad65cdc9bfcb35b7af0 106 PANTHER PTHR23426 3 103 8.9E-36 T 23-04-2016 RPE_RS07430 fe081bc9174d6ad65cdc9bfcb35b7af0 106 SUPERFAMILY SSF54292 3 104 2.29E-35 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RPE_RS07430 fe081bc9174d6ad65cdc9bfcb35b7af0 106 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 9 91 8.1E-18 T 23-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RPE_RS18350 e3482e2794a0606ee8484f6f359f4e10 278 PANTHER PTHR33490:SF3 1 271 3.3E-99 T 23-04-2016 RPE_RS18350 e3482e2794a0606ee8484f6f359f4e10 278 Gene3D G3DSA:3.90.260.10 165 226 4.2E-11 T 23-04-2016 IPR002931 Transglutaminase-like RPE_RS18350 e3482e2794a0606ee8484f6f359f4e10 278 SUPERFAMILY SSF54001 50 252 2.52E-41 T 23-04-2016 RPE_RS18350 e3482e2794a0606ee8484f6f359f4e10 278 Pfam PF01841 Transglutaminase-like superfamily 130 225 6.1E-20 T 23-04-2016 IPR002931 Transglutaminase-like RPE_RS18350 e3482e2794a0606ee8484f6f359f4e10 278 PANTHER PTHR33490 1 271 3.3E-99 T 23-04-2016 RPE_RS18350 e3482e2794a0606ee8484f6f359f4e10 278 SMART SM00460 164 227 9.9E-13 T 23-04-2016 IPR002931 Transglutaminase-like RPE_RS23815 ea7711bbaa90346fb355d4824b818379 68 Pfam PF09957 Bacterial antitoxin of type II TA system, VapB 1 42 1.9E-14 T 23-04-2016 IPR019239 Bacterial antitoxin of type II TA system, VapB RPE_RS09990 a905bbd1fb9a4185e83a6f7bd1e23932 299 Gene3D G3DSA:3.40.50.1820 8 298 8.7E-30 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS09990 a905bbd1fb9a4185e83a6f7bd1e23932 299 PANTHER PTHR11614:SF82 5 295 7.6E-56 T 23-04-2016 RPE_RS09990 a905bbd1fb9a4185e83a6f7bd1e23932 299 SUPERFAMILY SSF53474 5 297 1.2E-27 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS09990 a905bbd1fb9a4185e83a6f7bd1e23932 299 PIRSF PIRSF037442 1 299 2.6E-105 T 23-04-2016 IPR017208 Uncharacterised conserved protein UCP037442, alpha/beta hydrolase, RSp0795 RPE_RS09990 a905bbd1fb9a4185e83a6f7bd1e23932 299 Pfam PF12146 Serine aminopeptidase, S33 48 158 4.5E-10 T 23-04-2016 IPR022742 Serine aminopeptidase, S33 RPE_RS09990 a905bbd1fb9a4185e83a6f7bd1e23932 299 PANTHER PTHR11614 5 295 7.6E-56 T 23-04-2016 RPE_RS00780 e8647de6f713dfbdef268ae2711f4f2a 169 PIRSF PIRSF032131 1 169 4.2E-59 T 23-04-2016 IPR009562 Protein of unknown function DUF1178 RPE_RS00780 e8647de6f713dfbdef268ae2711f4f2a 169 Pfam PF06676 Protein of unknown function (DUF1178) 1 165 3.8E-56 T 23-04-2016 IPR009562 Protein of unknown function DUF1178 RPE_RS22155 fed4cc534a80f975b6f6767cb7b393fa 223 PANTHER PTHR13887 1 222 2.4E-35 T 23-04-2016 RPE_RS22155 fed4cc534a80f975b6f6767cb7b393fa 223 Gene3D G3DSA:3.40.30.10 147 217 1.2E-9 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS22155 fed4cc534a80f975b6f6767cb7b393fa 223 SUPERFAMILY SSF52833 44 218 3.4E-38 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS22155 fed4cc534a80f975b6f6767cb7b393fa 223 Pfam PF13462 Thioredoxin 52 218 1.6E-44 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS22155 fed4cc534a80f975b6f6767cb7b393fa 223 Gene3D G3DSA:3.40.30.10 40 145 1.9E-30 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS01750 b4ae6b94fe53fd68e6cbe398051ba3db 633 Gene3D G3DSA:1.20.1270.10 527 598 7.4E-31 T 23-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain RPE_RS01750 b4ae6b94fe53fd68e6cbe398051ba3db 633 Gene3D G3DSA:3.30.420.40 119 191 1.9E-65 T 23-04-2016 RPE_RS01750 b4ae6b94fe53fd68e6cbe398051ba3db 633 Gene3D G3DSA:3.30.420.40 4 52 1.9E-65 T 23-04-2016 RPE_RS01750 b4ae6b94fe53fd68e6cbe398051ba3db 633 SUPERFAMILY SSF53067 4 183 1.49E-66 T 23-04-2016 RPE_RS01750 b4ae6b94fe53fd68e6cbe398051ba3db 633 PANTHER PTHR19375:SF173 2 633 0.0 T 23-04-2016 RPE_RS01750 b4ae6b94fe53fd68e6cbe398051ba3db 633 PRINTS PR00301 70kDa heat shock protein signature 138 158 2.2E-81 T 23-04-2016 IPR013126 Heat shock protein 70 family RPE_RS01750 b4ae6b94fe53fd68e6cbe398051ba3db 633 PRINTS PR00301 70kDa heat shock protein signature 383 402 2.2E-81 T 23-04-2016 IPR013126 Heat shock protein 70 family RPE_RS01750 b4ae6b94fe53fd68e6cbe398051ba3db 633 PRINTS PR00301 70kDa heat shock protein signature 329 345 2.2E-81 T 23-04-2016 IPR013126 Heat shock protein 70 family RPE_RS01750 b4ae6b94fe53fd68e6cbe398051ba3db 633 PRINTS PR00301 70kDa heat shock protein signature 31 43 2.2E-81 T 23-04-2016 IPR013126 Heat shock protein 70 family RPE_RS01750 b4ae6b94fe53fd68e6cbe398051ba3db 633 PRINTS PR00301 70kDa heat shock protein signature 360 380 2.2E-81 T 23-04-2016 IPR013126 Heat shock protein 70 family RPE_RS01750 b4ae6b94fe53fd68e6cbe398051ba3db 633 PRINTS PR00301 70kDa heat shock protein signature 54 62 2.2E-81 T 23-04-2016 IPR013126 Heat shock protein 70 family RPE_RS01750 b4ae6b94fe53fd68e6cbe398051ba3db 633 PRINTS PR00301 70kDa heat shock protein signature 3 16 2.2E-81 T 23-04-2016 IPR013126 Heat shock protein 70 family RPE_RS01750 b4ae6b94fe53fd68e6cbe398051ba3db 633 PRINTS PR00301 70kDa heat shock protein signature 197 207 2.2E-81 T 23-04-2016 IPR013126 Heat shock protein 70 family RPE_RS01750 b4ae6b94fe53fd68e6cbe398051ba3db 633 PRINTS PR00301 70kDa heat shock protein signature 464 480 2.2E-81 T 23-04-2016 IPR013126 Heat shock protein 70 family RPE_RS01750 b4ae6b94fe53fd68e6cbe398051ba3db 633 Gene3D G3DSA:2.60.34.10 385 526 2.0E-71 T 23-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain RPE_RS01750 b4ae6b94fe53fd68e6cbe398051ba3db 633 SUPERFAMILY SSF100920 379 535 2.35E-62 T 23-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain RPE_RS01750 b4ae6b94fe53fd68e6cbe398051ba3db 633 SUPERFAMILY SSF53067 187 377 2.16E-69 T 23-04-2016 RPE_RS01750 b4ae6b94fe53fd68e6cbe398051ba3db 633 SUPERFAMILY SSF100934 502 601 7.32E-21 T 23-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain RPE_RS01750 b4ae6b94fe53fd68e6cbe398051ba3db 633 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 599 1.0E-300 T 23-04-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 RPE_RS01750 b4ae6b94fe53fd68e6cbe398051ba3db 633 Gene3D G3DSA:3.90.640.10 225 309 5.5E-32 T 23-04-2016 RPE_RS01750 b4ae6b94fe53fd68e6cbe398051ba3db 633 Pfam PF00012 Hsp70 protein 4 599 5.4E-276 T 23-04-2016 IPR013126 Heat shock protein 70 family RPE_RS01750 b4ae6b94fe53fd68e6cbe398051ba3db 633 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 23-04-2016 IPR018181 Heat shock protein 70, conserved site RPE_RS01750 b4ae6b94fe53fd68e6cbe398051ba3db 633 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 191 204 - T 23-04-2016 IPR018181 Heat shock protein 70, conserved site RPE_RS01750 b4ae6b94fe53fd68e6cbe398051ba3db 633 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 332 346 - T 23-04-2016 IPR018181 Heat shock protein 70, conserved site RPE_RS01750 b4ae6b94fe53fd68e6cbe398051ba3db 633 Gene3D G3DSA:3.30.420.40 314 356 7.2E-36 T 23-04-2016 RPE_RS01750 b4ae6b94fe53fd68e6cbe398051ba3db 633 Gene3D G3DSA:3.30.420.40 192 224 7.2E-36 T 23-04-2016 RPE_RS01750 b4ae6b94fe53fd68e6cbe398051ba3db 633 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 623 37.803 T 23-04-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 RPE_RS01750 b4ae6b94fe53fd68e6cbe398051ba3db 633 Gene3D G3DSA:3.30.30.30 53 106 3.0E-28 T 23-04-2016 RPE_RS01750 b4ae6b94fe53fd68e6cbe398051ba3db 633 PANTHER PTHR19375 2 633 0.0 T 23-04-2016 RPE_RS18330 671ea236d003d57747d52d466701892d 99 PANTHER PTHR33154 7 98 2.8E-20 T 23-04-2016 RPE_RS18330 671ea236d003d57747d52d466701892d 99 SMART SM00418 7 85 4.5E-19 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RPE_RS18330 671ea236d003d57747d52d466701892d 99 Gene3D G3DSA:1.10.10.10 6 78 9.9E-25 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS18330 671ea236d003d57747d52d466701892d 99 Pfam PF01022 Bacterial regulatory protein, arsR family 15 59 1.1E-11 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RPE_RS18330 671ea236d003d57747d52d466701892d 99 SUPERFAMILY SSF46785 3 77 1.31E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS18330 671ea236d003d57747d52d466701892d 99 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 9 24 3.2E-14 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RPE_RS18330 671ea236d003d57747d52d466701892d 99 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 57 72 3.2E-14 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RPE_RS18330 671ea236d003d57747d52d466701892d 99 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 42 57 3.2E-14 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RPE_RS18330 671ea236d003d57747d52d466701892d 99 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 29 40 3.2E-14 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RPE_RS11750 e36fe8a3519f73538c3628089b8926a7 210 Gene3D G3DSA:1.10.357.10 15 205 4.6E-32 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RPE_RS11750 e36fe8a3519f73538c3628089b8926a7 210 Pfam PF00440 Bacterial regulatory proteins, tetR family 27 72 3.8E-16 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS11750 e36fe8a3519f73538c3628089b8926a7 210 PANTHER PTHR30055 10 205 5.3E-35 T 23-04-2016 RPE_RS11750 e36fe8a3519f73538c3628089b8926a7 210 PANTHER PTHR30055:SF92 10 205 5.3E-35 T 23-04-2016 RPE_RS11750 e36fe8a3519f73538c3628089b8926a7 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 27 40 8.2E-10 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS11750 e36fe8a3519f73538c3628089b8926a7 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 48 71 8.2E-10 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS11750 e36fe8a3519f73538c3628089b8926a7 210 SUPERFAMILY SSF46689 15 91 1.4E-17 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS19365 0ba361a7cae2d7d1eb5fc5572e65110c 511 Pfam PF00361 Proton-conducting membrane transporter 126 414 5.4E-39 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RPE_RS19365 0ba361a7cae2d7d1eb5fc5572e65110c 511 PANTHER PTHR22773:SF49 1 499 7.3E-134 T 23-04-2016 RPE_RS19365 0ba361a7cae2d7d1eb5fc5572e65110c 511 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 326 345 7.4E-13 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RPE_RS19365 0ba361a7cae2d7d1eb5fc5572e65110c 511 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 161 185 7.4E-13 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RPE_RS19365 0ba361a7cae2d7d1eb5fc5572e65110c 511 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 131 150 7.4E-13 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RPE_RS19365 0ba361a7cae2d7d1eb5fc5572e65110c 511 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 234 258 7.4E-13 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RPE_RS19365 0ba361a7cae2d7d1eb5fc5572e65110c 511 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 379 405 7.4E-13 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RPE_RS19365 0ba361a7cae2d7d1eb5fc5572e65110c 511 PANTHER PTHR22773 1 499 7.3E-134 T 23-04-2016 RPE_RS03575 394377c7d724bf20c72755c034c830de 1095 PANTHER PTHR11102:SF11 864 1032 5.8E-47 T 23-04-2016 RPE_RS03575 394377c7d724bf20c72755c034c830de 1095 PANTHER PTHR11102:SF11 6 49 5.8E-47 T 23-04-2016 RPE_RS03575 394377c7d724bf20c72755c034c830de 1095 PANTHER PTHR11102 864 1032 5.8E-47 T 23-04-2016 RPE_RS03575 394377c7d724bf20c72755c034c830de 1095 PANTHER PTHR11102 6 49 5.8E-47 T 23-04-2016 RPE_RS03575 394377c7d724bf20c72755c034c830de 1095 Pfam PF08238 Sel1 repeat 994 1029 7.9E-8 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS03575 394377c7d724bf20c72755c034c830de 1095 Pfam PF08238 Sel1 repeat 958 992 1.4E-4 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS03575 394377c7d724bf20c72755c034c830de 1095 Pfam PF08238 Sel1 repeat 924 957 9.3E-6 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS03575 394377c7d724bf20c72755c034c830de 1095 Pfam PF08238 Sel1 repeat 887 920 0.014 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS03575 394377c7d724bf20c72755c034c830de 1095 Gene3D G3DSA:1.25.40.10 878 1043 3.1E-54 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS03575 394377c7d724bf20c72755c034c830de 1095 SMART SM00671 922 957 1.8E-6 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS03575 394377c7d724bf20c72755c034c830de 1095 SMART SM00671 886 921 2.2E-5 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS03575 394377c7d724bf20c72755c034c830de 1095 SMART SM00671 958 993 0.0022 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS03575 394377c7d724bf20c72755c034c830de 1095 SMART SM00671 994 1029 5.5E-11 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS03575 394377c7d724bf20c72755c034c830de 1095 SUPERFAMILY SSF81901 877 1032 1.74E-36 T 23-04-2016 RPE_RS03130 73fe3eceb504eb457f043a6c30823788 43 PRINTS PR00674 Light harvesting protein B chain signature 4 24 1.0E-12 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS03130 73fe3eceb504eb457f043a6c30823788 43 PRINTS PR00674 Light harvesting protein B chain signature 24 41 1.0E-12 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS03130 73fe3eceb504eb457f043a6c30823788 43 PIRSF PIRSF002900 1 43 3.5E-15 T 23-04-2016 IPR002362 Antenna complex, beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS03130 73fe3eceb504eb457f043a6c30823788 43 Pfam PF00556 Antenna complex alpha/beta subunit 9 42 3.2E-9 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS03130 73fe3eceb504eb457f043a6c30823788 43 Gene3D G3DSA:1.20.5.250 5 42 2.1E-20 T 23-04-2016 RPE_RS03130 73fe3eceb504eb457f043a6c30823788 43 ProSitePatterns PS00969 Antenna complexes beta subunits signature. 9 40 - T 23-04-2016 IPR023623 Antenna complex, beta subunit, conserved site RPE_RS03130 73fe3eceb504eb457f043a6c30823788 43 SUPERFAMILY SSF56918 5 42 3.92E-13 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS04195 087c01022e1299a911d3c044cc3eb1f9 262 PANTHER PTHR34001 4 262 3.4E-47 T 23-04-2016 RPE_RS04195 087c01022e1299a911d3c044cc3eb1f9 262 SUPERFAMILY SSF56925 23 258 9.68E-27 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RPE_RS04195 087c01022e1299a911d3c044cc3eb1f9 262 Gene3D G3DSA:2.40.160.20 16 258 4.9E-29 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RPE_RS04195 087c01022e1299a911d3c044cc3eb1f9 262 Pfam PF13505 Outer membrane protein beta-barrel domain 23 253 7.3E-16 T 23-04-2016 IPR027385 Outer membrane protein beta-barrel RPE_RS05440 334d7ff4a621cf741be2f783e1c9f647 644 Pfam PF00589 Phage integrase family 435 589 3.8E-7 T 23-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RPE_RS05440 334d7ff4a621cf741be2f783e1c9f647 644 Gene3D G3DSA:1.10.443.10 428 588 6.9E-15 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 RPE_RS05440 334d7ff4a621cf741be2f783e1c9f647 644 SUPERFAMILY SSF56349 255 311 1.29E-21 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RPE_RS05440 334d7ff4a621cf741be2f783e1c9f647 644 SUPERFAMILY SSF56349 342 589 1.29E-21 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RPE_RS20735 cc9de99feb037ad458281736d9af9e2f 513 PANTHER PTHR10515:SF0 75 496 4.1E-153 T 23-04-2016 RPE_RS20735 cc9de99feb037ad458281736d9af9e2f 513 Gene3D G3DSA:3.90.1170.30 422 497 2.1E-19 T 23-04-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 RPE_RS20735 cc9de99feb037ad458281736d9af9e2f 513 SUPERFAMILY SSF54680 422 499 6.93E-19 T 23-04-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 RPE_RS20735 cc9de99feb037ad458281736d9af9e2f 513 TIGRFAM TIGR02645 ARCH_P_rylase: putative thymidine phosphorylase 11 504 2.1E-209 T 23-04-2016 IPR013466 Thymidine phosphorylase/AMP phosphorylase GO:0016763 RPE_RS20735 cc9de99feb037ad458281736d9af9e2f 513 SUPERFAMILY SSF52418 166 413 1.23E-62 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 RPE_RS20735 cc9de99feb037ad458281736d9af9e2f 513 Gene3D G3DSA:3.40.1030.10 166 413 4.6E-67 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 RPE_RS20735 cc9de99feb037ad458281736d9af9e2f 513 Pfam PF02885 Glycosyl transferase family, helical bundle domain 103 161 2.7E-8 T 23-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain RPE_RS20735 cc9de99feb037ad458281736d9af9e2f 513 SMART SM00941 434 501 7.8E-26 T 23-04-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 RPE_RS20735 cc9de99feb037ad458281736d9af9e2f 513 Hamap MF_00703 Putative thymidine phosphorylase. 12 505 56.431 T 23-04-2016 IPR028579 Putative thymidine phosphorylase KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 RPE_RS20735 cc9de99feb037ad458281736d9af9e2f 513 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 434 498 9.4E-16 T 23-04-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 RPE_RS20735 cc9de99feb037ad458281736d9af9e2f 513 Gene3D G3DSA:1.20.970.10 101 163 1.1E-8 T 23-04-2016 RPE_RS20735 cc9de99feb037ad458281736d9af9e2f 513 Pfam PF00591 Glycosyl transferase family, a/b domain 172 245 2.6E-8 T 23-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 RPE_RS20735 cc9de99feb037ad458281736d9af9e2f 513 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 206 221 - T 23-04-2016 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 RPE_RS20735 cc9de99feb037ad458281736d9af9e2f 513 PANTHER PTHR10515 75 496 4.1E-153 T 23-04-2016 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 RPE_RS20735 cc9de99feb037ad458281736d9af9e2f 513 SUPERFAMILY SSF47648 101 166 1.22E-12 T 23-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain RPE_RS23420 55d206a037e337c288c02d5ed93f95fe 281 TIGRFAM TIGR03861 phenyl_ABC_PedC: alcohol ABC transporter, permease protein 19 270 9.8E-119 T 23-04-2016 IPR022403 Alcohol ABC transporter, permease protein RPE_RS23420 55d206a037e337c288c02d5ed93f95fe 281 Pfam PF01061 ABC-2 type transporter 24 239 3.8E-34 T 23-04-2016 IPR013525 ABC-2 type transporter GO:0016020 RPE_RS23420 55d206a037e337c288c02d5ed93f95fe 281 PANTHER PTHR30294:SF13 24 280 3.5E-105 T 23-04-2016 RPE_RS23420 55d206a037e337c288c02d5ed93f95fe 281 PRINTS PR00164 ABC-2 type transport system membrane protein signature 156 180 1.1E-8 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RPE_RS23420 55d206a037e337c288c02d5ed93f95fe 281 PRINTS PR00164 ABC-2 type transport system membrane protein signature 216 235 1.1E-8 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RPE_RS23420 55d206a037e337c288c02d5ed93f95fe 281 PRINTS PR00164 ABC-2 type transport system membrane protein signature 39 60 1.1E-8 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RPE_RS23420 55d206a037e337c288c02d5ed93f95fe 281 PIRSF PIRSF006648 3 269 6.2E-36 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RPE_RS23420 55d206a037e337c288c02d5ed93f95fe 281 PANTHER PTHR30294 24 280 3.5E-105 T 23-04-2016 RPE_RS02205 c97812c4b8c86d72ff2f9659387b97c4 131 SUPERFAMILY SSF52980 7 115 2.95E-21 T 23-04-2016 IPR011335 Restriction endonuclease type II-like RPE_RS02205 c97812c4b8c86d72ff2f9659387b97c4 131 PANTHER PTHR38590:SF1 1 121 5.0E-42 T 23-04-2016 RPE_RS02205 c97812c4b8c86d72ff2f9659387b97c4 131 PANTHER PTHR38590 1 121 5.0E-42 T 23-04-2016 RPE_RS02205 c97812c4b8c86d72ff2f9659387b97c4 131 Pfam PF04480 Protein of unknown function (DUF559) 9 112 8.3E-38 T 23-04-2016 IPR007569 Domain of unknown function DUF559 RPE_RS08825 8195313cf2f2861c528523b0d92135c3 259 Gene3D G3DSA:2.40.440.10 83 218 2.3E-35 T 23-04-2016 RPE_RS08825 8195313cf2f2861c528523b0d92135c3 259 SUPERFAMILY SSF141523 84 218 3.4E-34 T 23-04-2016 RPE_RS08825 8195313cf2f2861c528523b0d92135c3 259 PANTHER PTHR30582 74 232 1.4E-69 T 23-04-2016 RPE_RS08825 8195313cf2f2861c528523b0d92135c3 259 PANTHER PTHR30582:SF1 74 232 1.4E-69 T 23-04-2016 RPE_RS08825 8195313cf2f2861c528523b0d92135c3 259 Pfam PF03734 L,D-transpeptidase catalytic domain 90 217 7.6E-18 T 23-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 RPE_RS22475 cf1ff650377f9d805bf73f0d85be4f1f 355 Gene3D G3DSA:1.10.40.50 269 324 5.7E-20 T 23-04-2016 RPE_RS22475 cf1ff650377f9d805bf73f0d85be4f1f 355 Hamap MF_01820 Putative ribosome biogenesis GTPase RsgA [rsgA]. 27 328 30.104 T 23-04-2016 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 RPE_RS22475 cf1ff650377f9d805bf73f0d85be4f1f 355 Pfam PF03193 Protein of unknown function, DUF258 89 264 7.7E-45 T 23-04-2016 IPR010914 RsgA type GTPase domain GO:0003924|GO:0005525 RPE_RS22475 cf1ff650377f9d805bf73f0d85be4f1f 355 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 68 320 1.8E-53 T 23-04-2016 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 RPE_RS22475 cf1ff650377f9d805bf73f0d85be4f1f 355 Gene3D G3DSA:3.40.50.300 106 263 7.5E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS22475 cf1ff650377f9d805bf73f0d85be4f1f 355 SUPERFAMILY SSF52540 106 325 1.61E-47 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS22475 cf1ff650377f9d805bf73f0d85be4f1f 355 PANTHER PTHR32120:SF8 1 349 8.2E-109 T 23-04-2016 RPE_RS22475 cf1ff650377f9d805bf73f0d85be4f1f 355 PANTHER PTHR32120 1 349 8.2E-109 T 23-04-2016 RPE_RS15250 c3aa11b1db22f4d90bd85c2720e1ae5d 234 PANTHER PTHR33254:SF2 3 233 5.4E-110 T 23-04-2016 RPE_RS15250 c3aa11b1db22f4d90bd85c2720e1ae5d 234 SUPERFAMILY SSF89562 13 191 3.14E-38 T 23-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein RPE_RS15250 c3aa11b1db22f4d90bd85c2720e1ae5d 234 PANTHER PTHR33254 3 233 5.4E-110 T 23-04-2016 RPE_RS15250 c3aa11b1db22f4d90bd85c2720e1ae5d 234 Pfam PF03737 Demethylmenaquinone methyltransferase 29 179 1.0E-28 T 23-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein RPE_RS15250 c3aa11b1db22f4d90bd85c2720e1ae5d 234 Gene3D G3DSA:3.50.30.40 13 189 9.5E-41 T 23-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein RPE_RS22290 2bcdcb0e0737e5fbf2b2e25a951ac137 606 SUPERFAMILY SSF54001 26 226 7.02E-28 T 23-04-2016 RPE_RS22290 2bcdcb0e0737e5fbf2b2e25a951ac137 606 Gene3D G3DSA:3.90.70.10 27 216 1.4E-21 T 23-04-2016 RPE_RS22290 2bcdcb0e0737e5fbf2b2e25a951ac137 606 Pfam PF00112 Papain family cysteine protease 27 209 2.0E-6 T 23-04-2016 IPR000668 Peptidase C1A, papain C-terminal GO:0006508|GO:0008234 RPE_RS18550 6d0edea570eeaadfafdf807604377d89 321 PIRSF PIRSF006431 8 321 2.4E-108 T 23-04-2016 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 RPE_RS18550 6d0edea570eeaadfafdf807604377d89 321 SUPERFAMILY SSF53474 12 320 3.35E-55 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS18550 6d0edea570eeaadfafdf807604377d89 321 PANTHER PTHR10992:SF757 1 213 1.6E-69 T 23-04-2016 RPE_RS18550 6d0edea570eeaadfafdf807604377d89 321 PANTHER PTHR10992:SF757 261 320 1.6E-69 T 23-04-2016 RPE_RS18550 6d0edea570eeaadfafdf807604377d89 321 Gene3D G3DSA:3.40.50.1820 18 320 5.8E-56 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS18550 6d0edea570eeaadfafdf807604377d89 321 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 44 52 4.4E-12 T 23-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 RPE_RS18550 6d0edea570eeaadfafdf807604377d89 321 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 113 127 4.4E-12 T 23-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 RPE_RS18550 6d0edea570eeaadfafdf807604377d89 321 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 70 81 4.4E-12 T 23-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 RPE_RS18550 6d0edea570eeaadfafdf807604377d89 321 PANTHER PTHR10992 1 213 1.6E-69 T 23-04-2016 RPE_RS18550 6d0edea570eeaadfafdf807604377d89 321 PANTHER PTHR10992 261 320 1.6E-69 T 23-04-2016 RPE_RS18550 6d0edea570eeaadfafdf807604377d89 321 PRINTS PR00111 Alpha/beta hydrolase fold signature 113 126 4.4E-5 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS18550 6d0edea570eeaadfafdf807604377d89 321 PRINTS PR00111 Alpha/beta hydrolase fold signature 127 140 4.4E-5 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS18550 6d0edea570eeaadfafdf807604377d89 321 PRINTS PR00111 Alpha/beta hydrolase fold signature 67 82 4.4E-5 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS18550 6d0edea570eeaadfafdf807604377d89 321 Pfam PF00561 alpha/beta hydrolase fold 45 152 1.6E-21 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS18550 6d0edea570eeaadfafdf807604377d89 321 TIGRFAM TIGR01249 pro_imino_pep_1: prolyl aminopeptidase 20 319 3.0E-81 T 23-04-2016 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 RPE_RS01730 f977f790614295219d748441b430ec0e 235 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 11 226 5.8E-57 T 23-04-2016 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 RPE_RS01730 f977f790614295219d748441b430ec0e 235 Gene3D G3DSA:3.20.20.70 9 230 3.1E-76 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS01730 f977f790614295219d748441b430ec0e 235 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 8 231 36.251 T 23-04-2016 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 RPE_RS01730 f977f790614295219d748441b430ec0e 235 SMART SM00934 10 226 6.5E-86 T 23-04-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 RPE_RS01730 f977f790614295219d748441b430ec0e 235 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 10 226 2.9E-50 T 23-04-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 RPE_RS01730 f977f790614295219d748441b430ec0e 235 PANTHER PTHR32119 1 233 8.8E-92 T 23-04-2016 RPE_RS01730 f977f790614295219d748441b430ec0e 235 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 62 75 - T 23-04-2016 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 RPE_RS01730 f977f790614295219d748441b430ec0e 235 SUPERFAMILY SSF51366 6 233 2.2E-69 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 RPE_RS01730 f977f790614295219d748441b430ec0e 235 PANTHER PTHR32119:SF2 1 233 8.8E-92 T 23-04-2016 RPE_RS19805 58f382bc71d50cf0a909826a8ece2088 160 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 155 31.547 T 23-04-2016 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 RPE_RS19805 58f382bc71d50cf0a909826a8ece2088 160 Pfam PF03449 Transcription elongation factor, N-terminal 4 74 1.3E-31 T 23-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 RPE_RS19805 58f382bc71d50cf0a909826a8ece2088 160 Gene3D G3DSA:1.10.287.180 1 75 1.4E-33 T 23-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 RPE_RS19805 58f382bc71d50cf0a909826a8ece2088 160 PANTHER PTHR30437 1 157 1.0E-65 T 23-04-2016 RPE_RS19805 58f382bc71d50cf0a909826a8ece2088 160 SUPERFAMILY SSF54534 81 156 3.01E-22 T 23-04-2016 RPE_RS19805 58f382bc71d50cf0a909826a8ece2088 160 PIRSF PIRSF006092 1 158 1.3E-52 T 23-04-2016 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 RPE_RS19805 58f382bc71d50cf0a909826a8ece2088 160 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 23-04-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 RPE_RS19805 58f382bc71d50cf0a909826a8ece2088 160 Gene3D G3DSA:3.10.50.30 77 156 1.2E-28 T 23-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 RPE_RS19805 58f382bc71d50cf0a909826a8ece2088 160 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 82 155 8.4E-28 T 23-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 RPE_RS19805 58f382bc71d50cf0a909826a8ece2088 160 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 155 2.6E-58 T 23-04-2016 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 RPE_RS19805 58f382bc71d50cf0a909826a8ece2088 160 SUPERFAMILY SSF46557 3 78 4.32E-27 T 23-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 RPE_RS13185 9b33e65b8ca039f1270ccdb5646f4b08 400 Gene3D G3DSA:1.10.3210.10 194 231 3.7E-81 T 23-04-2016 IPR006674 HD domain RPE_RS13185 9b33e65b8ca039f1270ccdb5646f4b08 400 Gene3D G3DSA:1.10.3210.10 23 161 3.7E-81 T 23-04-2016 IPR006674 HD domain RPE_RS13185 9b33e65b8ca039f1270ccdb5646f4b08 400 Gene3D G3DSA:1.10.3210.10 285 397 3.7E-81 T 23-04-2016 IPR006674 HD domain RPE_RS13185 9b33e65b8ca039f1270ccdb5646f4b08 400 Hamap MF_01212 Deoxyguanosinetriphosphate triphosphohydrolase-like protein. 5 393 39.25 T 23-04-2016 IPR023023 Deoxyguanosinetriphosphate triphosphohydrolase, type 2 RPE_RS13185 9b33e65b8ca039f1270ccdb5646f4b08 400 PANTHER PTHR11373 1 337 4.8E-86 T 23-04-2016 RPE_RS13185 9b33e65b8ca039f1270ccdb5646f4b08 400 Pfam PF01966 HD domain 65 211 1.2E-16 T 23-04-2016 IPR006674 HD domain RPE_RS13185 9b33e65b8ca039f1270ccdb5646f4b08 400 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 27 393 4.7E-98 T 23-04-2016 IPR006261 Deoxyguanosinetriphosphate triphosphohydrolase GO:0000287|GO:0008832|GO:0046039 RPE_RS13185 9b33e65b8ca039f1270ccdb5646f4b08 400 Pfam PF13286 Phosphohydrolase-associated domain 299 391 1.9E-24 T 23-04-2016 IPR026875 Phosphohydrolase-associated domain RPE_RS13185 9b33e65b8ca039f1270ccdb5646f4b08 400 SUPERFAMILY SSF109604 16 161 3.14E-85 T 23-04-2016 RPE_RS13185 9b33e65b8ca039f1270ccdb5646f4b08 400 SUPERFAMILY SSF109604 193 396 3.14E-85 T 23-04-2016 RPE_RS13185 9b33e65b8ca039f1270ccdb5646f4b08 400 SMART SM00471 61 222 1.5E-12 T 23-04-2016 IPR003607 HD/PDEase domain RPE_RS13185 9b33e65b8ca039f1270ccdb5646f4b08 400 PANTHER PTHR11373:SF25 1 337 4.8E-86 T 23-04-2016 RPE_RS18805 c5cc9d3d3229cf174183d7845928d774 213 SUPERFAMILY SSF55811 49 203 2.71E-34 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS18805 c5cc9d3d3229cf174183d7845928d774 213 PANTHER PTHR11839 51 206 4.7E-29 T 23-04-2016 RPE_RS18805 c5cc9d3d3229cf174183d7845928d774 213 Gene3D G3DSA:3.90.79.10 48 202 1.4E-38 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS18805 c5cc9d3d3229cf174183d7845928d774 213 Pfam PF00293 NUDIX domain 58 176 4.0E-14 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RPE_RS18805 c5cc9d3d3229cf174183d7845928d774 213 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 48 199 5.9E-25 T 23-04-2016 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 RPE_RS18805 c5cc9d3d3229cf174183d7845928d774 213 PANTHER PTHR11839:SF5 51 206 4.7E-29 T 23-04-2016 RPE_RS07475 056ea465afa03871fd715faf8eed8b87 365 SUPERFAMILY SSF52242 215 354 1.7E-26 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RPE_RS07475 056ea465afa03871fd715faf8eed8b87 365 SMART SM01018 143 224 2.5E-9 T 23-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain RPE_RS07475 056ea465afa03871fd715faf8eed8b87 365 Gene3D G3DSA:3.40.50.280 229 356 4.8E-26 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RPE_RS07475 056ea465afa03871fd715faf8eed8b87 365 Gene3D G3DSA:1.10.1240.10 141 216 7.1E-6 T 23-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain RPE_RS07475 056ea465afa03871fd715faf8eed8b87 365 Pfam PF02607 B12 binding domain 147 217 2.2E-14 T 23-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain RPE_RS07475 056ea465afa03871fd715faf8eed8b87 365 Pfam PF02310 B12 binding domain 231 345 1.4E-20 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RPE_RS07475 056ea465afa03871fd715faf8eed8b87 365 SUPERFAMILY SSF47644 143 216 2.09E-5 T 23-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain RPE_RS07855 a7af4db93ebcce163db8a7f83452035e 235 SUPERFAMILY SSF47616 105 232 4.41E-26 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RPE_RS07855 a7af4db93ebcce163db8a7f83452035e 235 SUPERFAMILY SSF52833 1 82 7.65E-19 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS07855 a7af4db93ebcce163db8a7f83452035e 235 Pfam PF14497 Glutathione S-transferase, C-terminal domain 109 216 8.0E-30 T 23-04-2016 IPR004046 Glutathione S-transferase, C-terminal RPE_RS07855 a7af4db93ebcce163db8a7f83452035e 235 PANTHER PTHR11571:SF139 1 228 2.1E-125 T 23-04-2016 RPE_RS07855 a7af4db93ebcce163db8a7f83452035e 235 PANTHER PTHR11571 1 228 2.1E-125 T 23-04-2016 RPE_RS07855 a7af4db93ebcce163db8a7f83452035e 235 Gene3D G3DSA:1.20.1050.10 101 204 5.5E-53 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RPE_RS07855 a7af4db93ebcce163db8a7f83452035e 235 Gene3D G3DSA:3.40.30.10 1 100 2.8E-44 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS13795 ce44f35ffb3150ac55d7fb1e3e28691f 222 PANTHER PTHR11579 1 177 7.4E-21 T 23-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 RPE_RS13795 ce44f35ffb3150ac55d7fb1e3e28691f 222 PANTHER PTHR11579:SF0 1 177 7.4E-21 T 23-04-2016 RPE_RS13795 ce44f35ffb3150ac55d7fb1e3e28691f 222 SUPERFAMILY SSF53335 1 185 6.94E-37 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS13795 ce44f35ffb3150ac55d7fb1e3e28691f 222 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 10 177 2.4E-25 T 23-04-2016 RPE_RS13795 ce44f35ffb3150ac55d7fb1e3e28691f 222 Gene3D G3DSA:3.40.50.150 11 219 2.1E-43 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS15060 1579cf8ed3253cc8f486b2e431602a27 219 Pfam PF13505 Outer membrane protein beta-barrel domain 7 211 2.3E-26 T 23-04-2016 IPR027385 Outer membrane protein beta-barrel RPE_RS15060 1579cf8ed3253cc8f486b2e431602a27 219 SUPERFAMILY SSF56925 40 215 2.12E-32 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RPE_RS15060 1579cf8ed3253cc8f486b2e431602a27 219 Gene3D G3DSA:2.40.160.20 32 216 7.0E-37 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RPE_RS15060 1579cf8ed3253cc8f486b2e431602a27 219 PANTHER PTHR34001 1 219 3.4E-61 T 23-04-2016 RPE_RS23435 d054864a9621e6580bf0cd41375aec2d 579 Pfam PF00005 ABC transporter 391 520 4.6E-17 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS23435 d054864a9621e6580bf0cd41375aec2d 579 SUPERFAMILY SSF52540 371 556 6.43E-31 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS23435 d054864a9621e6580bf0cd41375aec2d 579 PANTHER PTHR11384 13 568 2.3E-200 T 23-04-2016 RPE_RS23435 d054864a9621e6580bf0cd41375aec2d 579 SUPERFAMILY SSF90123 17 341 4.97E-20 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RPE_RS23435 d054864a9621e6580bf0cd41375aec2d 579 Gene3D G3DSA:3.40.50.300 368 550 2.0E-31 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS23435 d054864a9621e6580bf0cd41375aec2d 579 SMART SM00382 394 579 8.8E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS23435 d054864a9621e6580bf0cd41375aec2d 579 ProSitePatterns PS00211 ABC transporters family signature. 492 506 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS23435 d054864a9621e6580bf0cd41375aec2d 579 Pfam PF06472 ABC transporter transmembrane region 2 3 296 6.7E-72 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RPE_RS23435 d054864a9621e6580bf0cd41375aec2d 579 PANTHER PTHR11384:SF3 13 568 2.3E-200 T 23-04-2016 RPE_RS23435 d054864a9621e6580bf0cd41375aec2d 579 Gene3D G3DSA:1.20.1560.10 17 340 3.2E-9 T 23-04-2016 RPE_RS09925 0c04feb157b121e2c257ce72ec8017c4 170 PANTHER PTHR41535 1 170 5.9E-39 T 23-04-2016 RPE_RS09925 0c04feb157b121e2c257ce72ec8017c4 170 PANTHER PTHR41535:SF1 1 170 5.9E-39 T 23-04-2016 RPE_RS09925 0c04feb157b121e2c257ce72ec8017c4 170 Pfam PF13975 gag-polyprotein putative aspartyl protease 62 153 9.0E-23 T 23-04-2016 RPE_RS09925 0c04feb157b121e2c257ce72ec8017c4 170 SUPERFAMILY SSF50630 55 155 3.41E-15 T 23-04-2016 IPR021109 Aspartic peptidase domain RPE_RS09925 0c04feb157b121e2c257ce72ec8017c4 170 TIGRFAM TIGR02281 clan_AA_DTGA: clan AA aspartic protease, TIGR02281 family 49 167 3.2E-41 T 23-04-2016 IPR011969 Clan AA aspartic peptidase, C-terminal RPE_RS19495 5bc4665884b12759ab004447f816630d 444 Pfam PF01794 Ferric reductase like transmembrane component 45 179 1.8E-20 T 23-04-2016 IPR013130 Ferric reductase transmembrane component-like domain RPE_RS19495 5bc4665884b12759ab004447f816630d 444 Gene3D G3DSA:2.40.30.10 238 317 2.7E-11 T 23-04-2016 RPE_RS19495 5bc4665884b12759ab004447f816630d 444 Pfam PF08022 FAD-binding domain 228 316 6.0E-9 T 23-04-2016 IPR013112 FAD-binding 8 GO:0016491|GO:0055114 RPE_RS19495 5bc4665884b12759ab004447f816630d 444 PANTHER PTHR11972 45 443 7.2E-49 T 23-04-2016 RPE_RS19495 5bc4665884b12759ab004447f816630d 444 SUPERFAMILY SSF52343 322 442 7.99E-22 T 23-04-2016 RPE_RS19495 5bc4665884b12759ab004447f816630d 444 PRINTS PR00409 Phthalate dioxygenase reductase family signature 305 319 1.7E-6 T 23-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 RPE_RS19495 5bc4665884b12759ab004447f816630d 444 PRINTS PR00409 Phthalate dioxygenase reductase family signature 409 417 1.7E-6 T 23-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 RPE_RS19495 5bc4665884b12759ab004447f816630d 444 PRINTS PR00409 Phthalate dioxygenase reductase family signature 327 346 1.7E-6 T 23-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 RPE_RS19495 5bc4665884b12759ab004447f816630d 444 PANTHER PTHR11972:SF23 45 443 7.2E-49 T 23-04-2016 RPE_RS19495 5bc4665884b12759ab004447f816630d 444 Gene3D G3DSA:3.40.50.80 322 441 1.9E-20 T 23-04-2016 RPE_RS19495 5bc4665884b12759ab004447f816630d 444 SUPERFAMILY SSF63380 247 317 1.47E-14 T 23-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 RPE_RS07190 3da4de515bc2533911efe4f3e17a3d67 166 Pfam PF10722 Putative bacterial sensory transduction regulator 14 143 4.1E-27 T 23-04-2016 IPR019660 Putative sensory transduction regulator YbjN RPE_RS10185 b2d6f8f86aa0b2030e8397ea17384378 280 Pfam PF07728 AAA domain (dynein-related subfamily) 29 171 1.8E-12 T 23-04-2016 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 RPE_RS10185 b2d6f8f86aa0b2030e8397ea17384378 280 PANTHER PTHR22908 1 233 2.8E-75 T 23-04-2016 RPE_RS10185 b2d6f8f86aa0b2030e8397ea17384378 280 Gene3D G3DSA:3.40.50.300 9 200 5.2E-31 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10185 b2d6f8f86aa0b2030e8397ea17384378 280 SUPERFAMILY SSF52540 7 247 8.84E-35 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10185 b2d6f8f86aa0b2030e8397ea17384378 280 SMART SM00382 25 183 5.4E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS10735 889e201569599f52361e29de614db191 472 Pfam PF01565 FAD binding domain 54 191 2.5E-35 T 23-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RPE_RS10735 889e201569599f52361e29de614db191 472 Gene3D G3DSA:3.30.465.10 110 228 3.0E-41 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RPE_RS10735 889e201569599f52361e29de614db191 472 Gene3D G3DSA:1.10.45.10 429 468 6.8E-13 T 23-04-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 RPE_RS10735 889e201569599f52361e29de614db191 472 PANTHER PTHR11748:SF97 11 470 0.0 T 23-04-2016 RPE_RS10735 889e201569599f52361e29de614db191 472 SUPERFAMILY SSF55103 231 471 1.96E-71 T 23-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RPE_RS10735 889e201569599f52361e29de614db191 472 Pfam PF02913 FAD linked oxidases, C-terminal domain 228 468 3.7E-65 T 23-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 RPE_RS10735 889e201569599f52361e29de614db191 472 SUPERFAMILY SSF56176 14 228 1.54E-63 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RPE_RS10735 889e201569599f52361e29de614db191 472 Gene3D G3DSA:3.30.43.10 7 109 4.6E-26 T 23-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 RPE_RS10735 889e201569599f52361e29de614db191 472 PANTHER PTHR11748 11 470 0.0 T 23-04-2016 RPE_RS18925 3ae390cd531371ef12b99d88c7d0dab2 292 PANTHER PTHR11795 1 292 2.3E-91 T 23-04-2016 RPE_RS18925 3ae390cd531371ef12b99d88c7d0dab2 292 PANTHER PTHR11795:SF371 1 292 2.3E-91 T 23-04-2016 RPE_RS18925 3ae390cd531371ef12b99d88c7d0dab2 292 Pfam PF02653 Branched-chain amino acid transport system / permease component 9 276 5.1E-35 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RPE_RS16135 3bf0928eb554e23bd8a67fb0f4177cb5 233 Gene3D G3DSA:1.20.120.530 79 219 2.9E-29 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RPE_RS16135 3bf0928eb554e23bd8a67fb0f4177cb5 233 PANTHER PTHR11751:SF395 16 101 2.2E-20 T 23-04-2016 RPE_RS16135 3bf0928eb554e23bd8a67fb0f4177cb5 233 SUPERFAMILY SSF48008 81 216 1.2E-25 T 23-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal RPE_RS16135 3bf0928eb554e23bd8a67fb0f4177cb5 233 Gene3D G3DSA:1.10.10.10 8 71 7.6E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS16135 3bf0928eb554e23bd8a67fb0f4177cb5 233 PANTHER PTHR11751 16 101 2.2E-20 T 23-04-2016 RPE_RS16135 3bf0928eb554e23bd8a67fb0f4177cb5 233 SMART SM00345 18 75 6.2E-13 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RPE_RS16135 3bf0928eb554e23bd8a67fb0f4177cb5 233 Pfam PF07729 FCD domain 85 209 4.3E-22 T 23-04-2016 IPR011711 GntR, C-terminal RPE_RS16135 3bf0928eb554e23bd8a67fb0f4177cb5 233 SMART SM00895 85 210 2.8E-15 T 23-04-2016 IPR011711 GntR, C-terminal RPE_RS16135 3bf0928eb554e23bd8a67fb0f4177cb5 233 SUPERFAMILY SSF46785 10 78 5.45E-15 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS16135 3bf0928eb554e23bd8a67fb0f4177cb5 233 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 70 8.3E-18 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RPE_RS16135 3bf0928eb554e23bd8a67fb0f4177cb5 233 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 5.0E-5 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RPE_RS16135 3bf0928eb554e23bd8a67fb0f4177cb5 233 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 5.0E-5 T 23-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RPE_RS12650 6a4cd4580c43bb6000ab6cfbf26e8674 200 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 42 193 38.704 T 23-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 RPE_RS12650 6a4cd4580c43bb6000ab6cfbf26e8674 200 Gene3D G3DSA:3.40.50.700 65 190 2.9E-32 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 RPE_RS12650 6a4cd4580c43bb6000ab6cfbf26e8674 200 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 79 186 4.5E-23 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 RPE_RS12650 6a4cd4580c43bb6000ab6cfbf26e8674 200 PANTHER PTHR11995 12 200 6.3E-129 T 23-04-2016 RPE_RS12650 6a4cd4580c43bb6000ab6cfbf26e8674 200 SUPERFAMILY SSF56770 51 194 1.7E-63 T 23-04-2016 RPE_RS12650 6a4cd4580c43bb6000ab6cfbf26e8674 200 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 53 194 6.4E-71 T 23-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 RPE_RS12650 6a4cd4580c43bb6000ab6cfbf26e8674 200 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 160 176 - T 23-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 RPE_RS12650 6a4cd4580c43bb6000ab6cfbf26e8674 200 PANTHER PTHR11995:SF22 12 200 6.3E-129 T 23-04-2016 RPE_RS09365 193dfae28ee5cf710488150cbf65c7b6 540 Pfam PF05872 Bacterial protein of unknown function (DUF853) 18 524 1.8E-217 T 23-04-2016 IPR033186 Helicase HerA-like C-terminal RPE_RS09365 193dfae28ee5cf710488150cbf65c7b6 540 Gene3D G3DSA:3.40.50.300 10 116 1.3E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS09365 193dfae28ee5cf710488150cbf65c7b6 540 Gene3D G3DSA:3.40.50.300 225 402 1.3E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS09365 193dfae28ee5cf710488150cbf65c7b6 540 PANTHER PTHR30121:SF3 26 462 6.4E-177 T 23-04-2016 RPE_RS09365 193dfae28ee5cf710488150cbf65c7b6 540 SUPERFAMILY SSF52540 18 404 7.96E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS09365 193dfae28ee5cf710488150cbf65c7b6 540 PANTHER PTHR30121 26 462 6.4E-177 T 23-04-2016 RPE_RS24355 49694f4cc8898f286bb0c39744d2b759 201 PANTHER PTHR36558:SF1 1 189 3.6E-40 T 23-04-2016 RPE_RS24355 49694f4cc8898f286bb0c39744d2b759 201 PANTHER PTHR36558 1 189 3.6E-40 T 23-04-2016 RPE_RS24355 49694f4cc8898f286bb0c39744d2b759 201 SUPERFAMILY SSF52980 5 177 3.32E-22 T 23-04-2016 IPR011335 Restriction endonuclease type II-like RPE_RS24355 49694f4cc8898f286bb0c39744d2b759 201 Gene3D G3DSA:3.90.1570.10 4 175 1.3E-20 T 23-04-2016 IPR012296 Nuclease, putative, TT1808 RPE_RS24355 49694f4cc8898f286bb0c39744d2b759 201 Pfam PF05685 Putative restriction endonuclease 12 176 4.0E-25 T 23-04-2016 IPR008538 Domain of unknown function DUF820 RPE_RS21755 db373b45d7e57ca04e1910f7ee719abd 337 Pfam PF06904 Extensin-like protein C-terminus 68 244 1.7E-48 T 23-04-2016 IPR009683 Extensin-like, C-terminal RPE_RS02065 2f610adc72d22609448d62c174c7349e 257 Pfam PF00672 HAMP domain 121 189 3.5E-10 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS02065 2f610adc72d22609448d62c174c7349e 257 SUPERFAMILY SSF158472 141 191 3.01E-8 T 23-04-2016 RPE_RS02065 2f610adc72d22609448d62c174c7349e 257 SMART SM00304 140 193 4.3E-6 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS14400 0988140d11940fad686f22e0ccc8431f 348 PANTHER PTHR11669:SF8 1 264 8.7E-53 T 23-04-2016 RPE_RS14400 0988140d11940fad686f22e0ccc8431f 348 SUPERFAMILY SSF52540 22 240 1.94E-39 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14400 0988140d11940fad686f22e0ccc8431f 348 Gene3D G3DSA:3.40.50.300 22 190 1.2E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14400 0988140d11940fad686f22e0ccc8431f 348 PANTHER PTHR11669 1 264 8.7E-53 T 23-04-2016 RPE_RS14400 0988140d11940fad686f22e0ccc8431f 348 Pfam PF13177 DNA polymerase III, delta subunit 25 200 2.1E-30 T 23-04-2016 RPE_RS14400 0988140d11940fad686f22e0ccc8431f 348 Gene3D G3DSA:1.10.8.60 191 240 3.5E-6 T 23-04-2016 RPE_RS24130 eda62d325958ded0b7cc5a6278e55308 233 ProDom PD207074 TRANSMEMBRANE MEMBRANE UNCHARACTERIZED RC1356 RP875 54 198 8.0E-6 T 23-04-2016 RPE_RS24130 eda62d325958ded0b7cc5a6278e55308 233 PANTHER PTHR30336:SF1 11 209 3.8E-35 T 23-04-2016 RPE_RS24130 eda62d325958ded0b7cc5a6278e55308 233 PANTHER PTHR30336 11 209 3.8E-35 T 23-04-2016 RPE_RS24130 eda62d325958ded0b7cc5a6278e55308 233 Pfam PF02698 DUF218 domain 54 193 9.5E-14 T 23-04-2016 IPR003848 Domain of unknown function DUF218 RPE_RS24130 eda62d325958ded0b7cc5a6278e55308 233 Gene3D G3DSA:3.40.50.620 50 165 1.9E-10 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS06855 d3855a21a513a165c2c1e7d3735163a6 485 Pfam PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain 155 462 2.3E-132 T 23-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RPE_RS06855 d3855a21a513a165c2c1e7d3735163a6 485 SUPERFAMILY SSF54966 10 150 1.7E-59 T 23-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RPE_RS06855 d3855a21a513a165c2c1e7d3735163a6 485 PANTHER PTHR23321 26 455 1.1E-239 T 23-04-2016 RPE_RS06855 d3855a21a513a165c2c1e7d3735163a6 485 Pfam PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain 25 145 9.7E-45 T 23-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RPE_RS06855 d3855a21a513a165c2c1e7d3735163a6 485 ProSitePatterns PS00157 Ribulose bisphosphate carboxylase large chain active site. 197 205 - T 23-04-2016 IPR020878 Ribulose bisphosphate carboxylase, large chain, active site GO:0000287|GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RPE_RS06855 d3855a21a513a165c2c1e7d3735163a6 485 Gene3D G3DSA:3.20.20.110 150 462 1.4E-159 T 23-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RPE_RS06855 d3855a21a513a165c2c1e7d3735163a6 485 PANTHER PTHR23321:SF19 26 455 1.1E-239 T 23-04-2016 RPE_RS06855 d3855a21a513a165c2c1e7d3735163a6 485 SUPERFAMILY SSF51649 151 477 8.51E-144 T 23-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RPE_RS06855 d3855a21a513a165c2c1e7d3735163a6 485 Hamap MF_01338 Ribulose bisphosphate carboxylase large chain [rbcL]. 9 475 59.287 T 23-04-2016 IPR020888 Ribulose bisphosphate carboxylase, large subunit GO:0000287|GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RPE_RS06855 d3855a21a513a165c2c1e7d3735163a6 485 Gene3D G3DSA:3.30.70.150 23 149 7.4E-63 T 23-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RPE_RS11455 818ebc16884b414339b2ccc7ebc02bd8 546 Gene3D G3DSA:1.10.560.10 367 519 1.4E-44 T 23-04-2016 IPR027413 GroEL-like equatorial domain RPE_RS11455 818ebc16884b414339b2ccc7ebc02bd8 546 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 527 7.6E-260 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RPE_RS11455 818ebc16884b414339b2ccc7ebc02bd8 546 PRINTS PR00298 60kDa chaperonin signature 83 110 7.4E-75 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RPE_RS11455 818ebc16884b414339b2ccc7ebc02bd8 546 PRINTS PR00298 60kDa chaperonin signature 27 53 7.4E-75 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RPE_RS11455 818ebc16884b414339b2ccc7ebc02bd8 546 PRINTS PR00298 60kDa chaperonin signature 268 291 7.4E-75 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RPE_RS11455 818ebc16884b414339b2ccc7ebc02bd8 546 PRINTS PR00298 60kDa chaperonin signature 350 375 7.4E-75 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RPE_RS11455 818ebc16884b414339b2ccc7ebc02bd8 546 PRINTS PR00298 60kDa chaperonin signature 398 419 7.4E-75 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RPE_RS11455 818ebc16884b414339b2ccc7ebc02bd8 546 Hamap MF_00600 60 kDa chaperonin [groL]. 2 544 41.952 T 23-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RPE_RS11455 818ebc16884b414339b2ccc7ebc02bd8 546 SUPERFAMILY SSF52029 184 376 6.63E-86 T 23-04-2016 IPR027409 GroEL-like apical domain RPE_RS11455 818ebc16884b414339b2ccc7ebc02bd8 546 Gene3D G3DSA:1.10.560.10 3 188 4.6E-45 T 23-04-2016 IPR027413 GroEL-like equatorial domain RPE_RS11455 818ebc16884b414339b2ccc7ebc02bd8 546 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 524 3.0E-98 T 23-04-2016 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 RPE_RS11455 818ebc16884b414339b2ccc7ebc02bd8 546 SUPERFAMILY SSF48592 406 522 9.16E-77 T 23-04-2016 RPE_RS11455 818ebc16884b414339b2ccc7ebc02bd8 546 SUPERFAMILY SSF48592 7 134 9.16E-77 T 23-04-2016 RPE_RS11455 818ebc16884b414339b2ccc7ebc02bd8 546 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 23-04-2016 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 RPE_RS11455 818ebc16884b414339b2ccc7ebc02bd8 546 SUPERFAMILY SSF54849 138 207 2.98E-24 T 23-04-2016 RPE_RS11455 818ebc16884b414339b2ccc7ebc02bd8 546 PANTHER PTHR11353 3 546 1.0E-261 T 23-04-2016 RPE_RS11455 818ebc16884b414339b2ccc7ebc02bd8 546 Gene3D G3DSA:3.50.7.10 189 366 1.9E-102 T 23-04-2016 IPR027409 GroEL-like apical domain RPE_RS13100 faae54fab5fb9f517e7f91b20a0a2fd8 346 PANTHER PTHR11516 23 344 6.1E-174 T 23-04-2016 RPE_RS13100 faae54fab5fb9f517e7f91b20a0a2fd8 346 TIGRFAM TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 33 344 7.2E-153 T 23-04-2016 IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y GO:0004739|GO:0006086|GO:0043231 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 RPE_RS13100 faae54fab5fb9f517e7f91b20a0a2fd8 346 Gene3D G3DSA:3.40.50.970 23 344 5.4E-135 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS13100 faae54fab5fb9f517e7f91b20a0a2fd8 346 PANTHER PTHR11516:SF40 23 344 6.1E-174 T 23-04-2016 RPE_RS13100 faae54fab5fb9f517e7f91b20a0a2fd8 346 Pfam PF00676 Dehydrogenase E1 component 41 337 8.3E-105 T 23-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 RPE_RS13100 faae54fab5fb9f517e7f91b20a0a2fd8 346 SUPERFAMILY SSF52518 23 345 2.02E-103 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS21315 97d2bdb1a66b4391d8534a9a95b807b7 312 Pfam PF10099 Anti-sigma-K factor rskA 60 299 1.0E-24 T 23-04-2016 IPR018764 Anti-sigma K factor RskA GO:0005886|GO:0016021 RPE_RS01880 6175509b3519c29bbfd2d9e6f08dfd59 233 SMART SM00978 85 231 1.1E-57 T 23-04-2016 IPR007379 Tim44-like domain RPE_RS01880 6175509b3519c29bbfd2d9e6f08dfd59 233 SUPERFAMILY SSF54427 74 229 1.62E-54 T 23-04-2016 IPR032710 NTF2-like domain RPE_RS01880 6175509b3519c29bbfd2d9e6f08dfd59 233 PANTHER PTHR10721:SF2 1 227 6.2E-92 T 23-04-2016 RPE_RS01880 6175509b3519c29bbfd2d9e6f08dfd59 233 Pfam PF04280 Tim44-like domain 87 229 5.5E-49 T 23-04-2016 IPR007379 Tim44-like domain RPE_RS01880 6175509b3519c29bbfd2d9e6f08dfd59 233 PIRSF PIRSF031890 1 233 1.2E-95 T 23-04-2016 IPR016985 Uncharacterised conserved protein UCP031890, Tim44-related RPE_RS01880 6175509b3519c29bbfd2d9e6f08dfd59 233 PANTHER PTHR10721 1 227 6.2E-92 T 23-04-2016 RPE_RS16340 76b5016d2d816b492ec8d48073eef745 1006 Gene3D G3DSA:3.40.50.300 373 476 7.2E-4 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16340 76b5016d2d816b492ec8d48073eef745 1006 TIGRFAM TIGR02768 TraA_Ti: Ti-type conjugative transfer relaxase TraA 1 757 2.1E-267 T 23-04-2016 IPR014136 Ti-type conjugative transfer relaxase TraA RPE_RS16340 76b5016d2d816b492ec8d48073eef745 1006 Gene3D G3DSA:3.40.50.300 660 719 2.4E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16340 76b5016d2d816b492ec8d48073eef745 1006 Gene3D G3DSA:3.40.50.300 477 592 2.4E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16340 76b5016d2d816b492ec8d48073eef745 1006 Pfam PF03389 MobA/MobL family 18 216 1.3E-72 T 23-04-2016 IPR005053 MobA/MobL protein RPE_RS16340 76b5016d2d816b492ec8d48073eef745 1006 Pfam PF13604 AAA domain 357 543 2.0E-57 T 23-04-2016 RPE_RS16340 76b5016d2d816b492ec8d48073eef745 1006 SUPERFAMILY SSF52540 465 526 1.27E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16340 76b5016d2d816b492ec8d48073eef745 1006 SUPERFAMILY SSF52540 565 728 1.27E-36 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16340 76b5016d2d816b492ec8d48073eef745 1006 SUPERFAMILY SSF52540 353 529 2.77E-23 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS21095 44e66f0f471e4beed37c8eff8b2a85e3 315 PANTHER PTHR11795:SF379 289 313 1.9E-65 T 23-04-2016 RPE_RS21095 44e66f0f471e4beed37c8eff8b2a85e3 315 PANTHER PTHR11795 2 270 1.9E-65 T 23-04-2016 RPE_RS21095 44e66f0f471e4beed37c8eff8b2a85e3 315 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 301 1.2E-29 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RPE_RS21095 44e66f0f471e4beed37c8eff8b2a85e3 315 PANTHER PTHR11795:SF379 2 270 1.9E-65 T 23-04-2016 RPE_RS21095 44e66f0f471e4beed37c8eff8b2a85e3 315 PANTHER PTHR11795 289 313 1.9E-65 T 23-04-2016 RPE_RS01655 16c2cab119fc99ba257dec0d700204fe 247 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 31 226 1.8E-48 T 23-04-2016 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RPE_RS01655 16c2cab119fc99ba257dec0d700204fe 247 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 247 102.967 T 23-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RPE_RS01655 16c2cab119fc99ba257dec0d700204fe 247 Gene3D G3DSA:1.10.1270.20 166 232 1.4E-27 T 23-04-2016 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RPE_RS01655 16c2cab119fc99ba257dec0d700204fe 247 PANTHER PTHR32125 9 233 6.4E-97 T 23-04-2016 RPE_RS01655 16c2cab119fc99ba257dec0d700204fe 247 PIRSF PIRSF000386 8 242 1.0E-86 T 23-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RPE_RS01655 16c2cab119fc99ba257dec0d700204fe 247 Gene3D G3DSA:3.40.1280.10 8 165 3.3E-61 T 23-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RPE_RS01655 16c2cab119fc99ba257dec0d700204fe 247 PANTHER PTHR32125:SF1 9 233 6.4E-97 T 23-04-2016 RPE_RS01655 16c2cab119fc99ba257dec0d700204fe 247 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 10 230 3.0E-76 T 23-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RPE_RS01655 16c2cab119fc99ba257dec0d700204fe 247 SUPERFAMILY SSF75217 8 233 5.3E-89 T 23-04-2016 IPR029028 Alpha/beta knot methyltransferases RPE_RS01985 dc7227e68d0a5ae47a0d45e02663d059 270 SUPERFAMILY SSF56219 3 270 1.7E-67 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RPE_RS01985 dc7227e68d0a5ae47a0d45e02663d059 270 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 5 268 4.6E-51 T 23-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 RPE_RS01985 dc7227e68d0a5ae47a0d45e02663d059 270 PANTHER PTHR22748:SF7 1 270 2.9E-90 T 23-04-2016 RPE_RS01985 dc7227e68d0a5ae47a0d45e02663d059 270 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 29 38 - T 23-04-2016 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 RPE_RS01985 dc7227e68d0a5ae47a0d45e02663d059 270 Gene3D G3DSA:3.60.10.10 3 269 2.1E-65 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RPE_RS01985 dc7227e68d0a5ae47a0d45e02663d059 270 PANTHER PTHR22748 1 270 2.9E-90 T 23-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 RPE_RS01985 dc7227e68d0a5ae47a0d45e02663d059 270 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 7 261 4.4E-23 T 23-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RPE_RS14135 5b3a89c8c51a2a30f0ab59a2792d0551 157 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 11 148 1.3E-37 T 23-04-2016 IPR011605 NusB antitermination factor GO:0006353 RPE_RS14135 5b3a89c8c51a2a30f0ab59a2792d0551 157 Pfam PF01029 NusB family 14 147 7.1E-32 T 23-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RPE_RS14135 5b3a89c8c51a2a30f0ab59a2792d0551 157 Hamap MF_00073 N utilization substance protein B homolog [nusB]. 8 150 20.832 T 23-04-2016 IPR011605 NusB antitermination factor GO:0006353 RPE_RS14135 5b3a89c8c51a2a30f0ab59a2792d0551 157 Gene3D G3DSA:1.10.940.10 11 154 2.1E-38 T 23-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RPE_RS14135 5b3a89c8c51a2a30f0ab59a2792d0551 157 SUPERFAMILY SSF48013 9 152 9.16E-37 T 23-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RPE_RS14135 5b3a89c8c51a2a30f0ab59a2792d0551 157 PANTHER PTHR11078 6 153 3.2E-39 T 23-04-2016 IPR011605 NusB antitermination factor GO:0006353 RPE_RS00700 3b96bca447e54c414468f9c33ca3fc67 481 PANTHER PTHR36699 1 313 8.1E-72 T 23-04-2016 RPE_RS00700 3b96bca447e54c414468f9c33ca3fc67 481 SUPERFAMILY SSF141523 56 175 4.32E-8 T 23-04-2016 RPE_RS23125 ecbfec2c02341d3a14166535c10b8d78 230 Pfam PF00072 Response regulator receiver domain 7 115 1.9E-23 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS23125 ecbfec2c02341d3a14166535c10b8d78 230 Gene3D G3DSA:3.40.50.2300 4 127 1.8E-34 T 23-04-2016 RPE_RS23125 ecbfec2c02341d3a14166535c10b8d78 230 SMART SM00448 5 115 4.6E-30 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS23125 ecbfec2c02341d3a14166535c10b8d78 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 226 1.9E-24 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS23125 ecbfec2c02341d3a14166535c10b8d78 230 PANTHER PTHR26402:SF516 5 226 1.1E-82 T 23-04-2016 RPE_RS23125 ecbfec2c02341d3a14166535c10b8d78 230 SMART SM00862 150 226 1.4E-27 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS23125 ecbfec2c02341d3a14166535c10b8d78 230 PANTHER PTHR26402 5 226 1.1E-82 T 23-04-2016 RPE_RS23125 ecbfec2c02341d3a14166535c10b8d78 230 SUPERFAMILY SSF52172 5 174 7.04E-36 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS23125 ecbfec2c02341d3a14166535c10b8d78 230 Gene3D G3DSA:1.10.10.10 128 226 3.4E-32 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS13120 963c77923b5527b6b8719c5e47d50202 451 Gene3D G3DSA:3.30.559.10 219 450 1.0E-82 T 23-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain RPE_RS13120 963c77923b5527b6b8719c5e47d50202 451 Gene3D G3DSA:4.10.320.10 140 192 3.8E-17 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RPE_RS13120 963c77923b5527b6b8719c5e47d50202 451 TIGRFAM TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 4 451 3.7E-167 T 23-04-2016 IPR006257 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex GO:0004742|GO:0006090|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 RPE_RS13120 963c77923b5527b6b8719c5e47d50202 451 SUPERFAMILY SSF47005 141 184 4.71E-11 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RPE_RS13120 963c77923b5527b6b8719c5e47d50202 451 Pfam PF02817 e3 binding domain 147 181 1.5E-13 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RPE_RS13120 963c77923b5527b6b8719c5e47d50202 451 PANTHER PTHR23151:SF9 5 449 5.8E-190 T 23-04-2016 RPE_RS13120 963c77923b5527b6b8719c5e47d50202 451 SUPERFAMILY SSF52777 219 450 8.45E-75 T 23-04-2016 RPE_RS13120 963c77923b5527b6b8719c5e47d50202 451 Pfam PF00364 Biotin-requiring enzyme 5 77 1.8E-21 T 23-04-2016 IPR000089 Biotin/lipoyl attachment RPE_RS13120 963c77923b5527b6b8719c5e47d50202 451 SUPERFAMILY SSF51230 1 96 6.67E-29 T 23-04-2016 IPR011053 Single hybrid motif RPE_RS13120 963c77923b5527b6b8719c5e47d50202 451 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 220 450 1.1E-74 T 23-04-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 RPE_RS13120 963c77923b5527b6b8719c5e47d50202 451 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 23-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site RPE_RS13120 963c77923b5527b6b8719c5e47d50202 451 PANTHER PTHR23151 5 449 5.8E-190 T 23-04-2016 RPE_RS13120 963c77923b5527b6b8719c5e47d50202 451 Gene3D G3DSA:2.40.50.100 2 97 2.2E-34 T 23-04-2016 RPE_RS05830 754701d24a74de9ea9493df2e1342fa7 311 Gene3D G3DSA:2.30.330.10 218 302 8.2E-9 T 23-04-2016 RPE_RS05830 754701d24a74de9ea9493df2e1342fa7 311 Pfam PF02154 Flagellar motor switch protein FliM 21 206 8.5E-24 T 23-04-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 RPE_RS05830 754701d24a74de9ea9493df2e1342fa7 311 PANTHER PTHR30034:SF0 22 304 4.1E-68 T 23-04-2016 RPE_RS05830 754701d24a74de9ea9493df2e1342fa7 311 SUPERFAMILY SSF103039 23 207 8.63E-6 T 23-04-2016 IPR028976 CheC-like domain RPE_RS05830 754701d24a74de9ea9493df2e1342fa7 311 PANTHER PTHR30034 22 304 4.1E-68 T 23-04-2016 RPE_RS05830 754701d24a74de9ea9493df2e1342fa7 311 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 228 297 4.2E-16 T 23-04-2016 IPR001543 Surface presentation of antigen (SpoA) RPE_RS05830 754701d24a74de9ea9493df2e1342fa7 311 SUPERFAMILY SSF101801 225 303 7.32E-12 T 23-04-2016 IPR001543 Surface presentation of antigen (SpoA) RPE_RS17450 0810d45c5cbaa8b703e70e944cd7326c 727 SUPERFAMILY SSF56935 467 727 7.63E-84 T 23-04-2016 RPE_RS17450 0810d45c5cbaa8b703e70e944cd7326c 727 SUPERFAMILY SSF56935 400 439 7.63E-84 T 23-04-2016 RPE_RS17450 0810d45c5cbaa8b703e70e944cd7326c 727 SUPERFAMILY SSF56935 54 368 7.63E-84 T 23-04-2016 RPE_RS17450 0810d45c5cbaa8b703e70e944cd7326c 727 Pfam PF00593 TonB dependent receptor 478 725 6.3E-24 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RPE_RS17450 0810d45c5cbaa8b703e70e944cd7326c 727 Pfam PF07715 TonB-dependent Receptor Plug Domain 54 152 1.7E-13 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RPE_RS17450 0810d45c5cbaa8b703e70e944cd7326c 727 Gene3D G3DSA:2.40.170.20 154 727 2.0E-66 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RPE_RS17450 0810d45c5cbaa8b703e70e944cd7326c 727 PANTHER PTHR32552 54 727 3.3E-37 T 23-04-2016 RPE_RS17450 0810d45c5cbaa8b703e70e944cd7326c 727 Gene3D G3DSA:2.170.130.10 30 153 2.3E-24 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RPE_RS23050 5e4d7485dc64619a017a07f270c62527 102 Pfam PF13601 Winged helix DNA-binding domain 12 94 1.6E-25 T 23-04-2016 IPR027395 Winged helix DNA-binding domain RPE_RS23050 5e4d7485dc64619a017a07f270c62527 102 PANTHER PTHR37318 1 99 2.1E-28 T 23-04-2016 RPE_RS23050 5e4d7485dc64619a017a07f270c62527 102 SUPERFAMILY SSF46785 2 95 1.02E-9 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS23050 5e4d7485dc64619a017a07f270c62527 102 Gene3D G3DSA:1.10.10.10 1 96 2.9E-18 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS12745 181d7cf96b604a1e33ed0d72575d975b 96 Pfam PF07330 Protein of unknown function (DUF1467) 4 88 1.2E-29 T 23-04-2016 IPR009935 Protein of unknown function DUF1467 RPE_RS02110 ee0a2d1b3fcccbefa7c6ab2541332df2 453 Pfam PF09967 VWA-like domain (DUF2201) 330 453 1.7E-40 T 23-04-2016 IPR018698 VWA-like domain RPE_RS02110 ee0a2d1b3fcccbefa7c6ab2541332df2 453 Pfam PF13203 Putative metallopeptidase domain 8 321 9.4E-89 T 23-04-2016 IPR025154 Putative metallopeptidase domain RPE_RS02110 ee0a2d1b3fcccbefa7c6ab2541332df2 453 PANTHER PTHR38730 237 443 4.9E-22 T 23-04-2016 RPE_RS02110 ee0a2d1b3fcccbefa7c6ab2541332df2 453 PANTHER PTHR38730 60 217 4.9E-22 T 23-04-2016 RPE_RS02110 ee0a2d1b3fcccbefa7c6ab2541332df2 453 PANTHER PTHR38730:SF1 237 443 4.9E-22 T 23-04-2016 RPE_RS02110 ee0a2d1b3fcccbefa7c6ab2541332df2 453 PANTHER PTHR38730:SF1 60 217 4.9E-22 T 23-04-2016 RPE_RS01170 8fb1e2a83df386cae58c564984083218 372 SMART SM00327 30 213 1.6E-10 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS01170 8fb1e2a83df386cae58c564984083218 372 Pfam PF13519 von Willebrand factor type A domain 33 144 9.5E-8 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS01170 8fb1e2a83df386cae58c564984083218 372 Gene3D G3DSA:3.40.50.410 30 204 1.2E-9 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS01170 8fb1e2a83df386cae58c564984083218 372 SUPERFAMILY SSF53300 31 207 2.86E-22 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS08550 ff4b09a0df0140a0c17d19ddbba5596e 260 PANTHER PTHR12110 1 259 3.3E-144 T 23-04-2016 RPE_RS08550 ff4b09a0df0140a0c17d19ddbba5596e 260 PANTHER PTHR12110:SF16 1 259 3.3E-144 T 23-04-2016 RPE_RS08550 ff4b09a0df0140a0c17d19ddbba5596e 260 SUPERFAMILY SSF51658 1 256 4.42E-74 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RPE_RS08550 ff4b09a0df0140a0c17d19ddbba5596e 260 Gene3D G3DSA:3.20.20.150 1 256 9.8E-79 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RPE_RS08550 ff4b09a0df0140a0c17d19ddbba5596e 260 PIRSF PIRSF006241 1 259 1.1E-85 T 23-04-2016 IPR026040 Hydroxypyruvate isomerase-like KEGG: 00630+5.3.1.22 RPE_RS08550 ff4b09a0df0140a0c17d19ddbba5596e 260 Pfam PF01261 Xylose isomerase-like TIM barrel 21 207 4.4E-26 T 23-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain RPE_RS11285 b3d9d9dad33fd53a143ada8c9cc444cc 387 Gene3D G3DSA:1.10.540.10 3 118 2.7E-32 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS11285 b3d9d9dad33fd53a143ada8c9cc444cc 387 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 217 2.7E-25 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RPE_RS11285 b3d9d9dad33fd53a143ada8c9cc444cc 387 PANTHER PTHR10909:SF325 1 381 1.5E-271 T 23-04-2016 RPE_RS11285 b3d9d9dad33fd53a143ada8c9cc444cc 387 SUPERFAMILY SSF47203 230 376 8.05E-40 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS11285 b3d9d9dad33fd53a143ada8c9cc444cc 387 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 5 117 9.9E-28 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS11285 b3d9d9dad33fd53a143ada8c9cc444cc 387 SUPERFAMILY SSF56645 2 241 5.24E-80 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RPE_RS11285 b3d9d9dad33fd53a143ada8c9cc444cc 387 Gene3D G3DSA:1.20.140.10 219 375 1.9E-52 T 23-04-2016 RPE_RS11285 b3d9d9dad33fd53a143ada8c9cc444cc 387 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 336 355 - T 23-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RPE_RS11285 b3d9d9dad33fd53a143ada8c9cc444cc 387 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 124 136 - T 23-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RPE_RS11285 b3d9d9dad33fd53a143ada8c9cc444cc 387 Gene3D G3DSA:2.40.110.10 121 218 4.8E-42 T 23-04-2016 RPE_RS11285 b3d9d9dad33fd53a143ada8c9cc444cc 387 PANTHER PTHR10909 1 381 1.5E-271 T 23-04-2016 RPE_RS11285 b3d9d9dad33fd53a143ada8c9cc444cc 387 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 231 373 4.8E-40 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS11285 b3d9d9dad33fd53a143ada8c9cc444cc 387 PIRSF PIRSF016578 3 362 3.2E-14 T 23-04-2016 RPE_RS11385 8007db3348b8c29d4e2563d127562c03 145 Pfam PF09537 Domain of unknown function (DUF2383) 5 112 1.1E-16 T 23-04-2016 IPR019052 Domain of unknown function DUF2383 RPE_RS24040 fe5f8d3ecc0ba80080f3b3ff980a4564 201 PANTHER PTHR30446 4 201 4.1E-99 T 23-04-2016 RPE_RS24040 fe5f8d3ecc0ba80080f3b3ff980a4564 201 Pfam PF13662 Toprim domain 84 174 2.3E-22 T 23-04-2016 IPR006171 Toprim domain RPE_RS24040 fe5f8d3ecc0ba80080f3b3ff980a4564 201 Hamap MF_00017 Recombination protein RecR [recR]. 1 201 92.719 T 23-04-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 RPE_RS24040 fe5f8d3ecc0ba80080f3b3ff980a4564 201 TIGRFAM TIGR00615 recR: recombination protein RecR 8 198 1.6E-64 T 23-04-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 RPE_RS24040 fe5f8d3ecc0ba80080f3b3ff980a4564 201 Pfam PF02132 RecR protein 44 81 1.5E-13 T 23-04-2016 IPR023628 Recombination protein RecR, C4-type zinc finger RPE_RS24040 fe5f8d3ecc0ba80080f3b3ff980a4564 201 ProSitePatterns PS01300 RecR protein signature. 60 81 - T 23-04-2016 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 RPE_RS24040 fe5f8d3ecc0ba80080f3b3ff980a4564 201 SUPERFAMILY SSF111304 8 200 6.54E-69 T 23-04-2016 IPR023627 Recombination protein RecR RPE_RS24040 fe5f8d3ecc0ba80080f3b3ff980a4564 201 PANTHER PTHR30446:SF0 4 201 4.1E-99 T 23-04-2016 RPE_RS00180 a3d0f0c8f3add4364689f06a5c20ec96 197 Pfam PF13023 HD domain 17 166 3.0E-40 T 23-04-2016 IPR006674 HD domain RPE_RS00180 a3d0f0c8f3add4364689f06a5c20ec96 197 Gene3D G3DSA:1.10.3210.10 5 182 9.5E-42 T 23-04-2016 IPR006674 HD domain RPE_RS00180 a3d0f0c8f3add4364689f06a5c20ec96 197 PANTHER PTHR11845 1 197 2.1E-46 T 23-04-2016 RPE_RS00180 a3d0f0c8f3add4364689f06a5c20ec96 197 SUPERFAMILY SSF109604 8 177 3.38E-37 T 23-04-2016 RPE_RS00180 a3d0f0c8f3add4364689f06a5c20ec96 197 SMART SM00471 33 150 0.0011 T 23-04-2016 IPR003607 HD/PDEase domain RPE_RS05510 62a9032abf4a045deeda9b30eb3b2775 279 Gene3D G3DSA:3.40.50.300 42 181 5.6E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS05510 62a9032abf4a045deeda9b30eb3b2775 279 SMART SM00382 42 191 4.8E-4 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS05510 62a9032abf4a045deeda9b30eb3b2775 279 PANTHER PTHR35894:SF1 2 262 7.0E-72 T 23-04-2016 RPE_RS05510 62a9032abf4a045deeda9b30eb3b2775 279 SUPERFAMILY SSF52540 5 261 4.87E-33 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS05510 62a9032abf4a045deeda9b30eb3b2775 279 PANTHER PTHR35894 2 262 7.0E-72 T 23-04-2016 RPE_RS05510 62a9032abf4a045deeda9b30eb3b2775 279 Pfam PF13401 AAA domain 42 169 1.2E-19 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS01975 43a4f1f5818db9d7e31fd8bfd648efda 227 SUPERFAMILY SSF52172 4 171 1.85E-37 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS01975 43a4f1f5818db9d7e31fd8bfd648efda 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 225 1.2E-20 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS01975 43a4f1f5818db9d7e31fd8bfd648efda 227 PANTHER PTHR26402:SF50 5 227 5.1E-87 T 23-04-2016 RPE_RS01975 43a4f1f5818db9d7e31fd8bfd648efda 227 SMART SM00448 5 117 2.4E-35 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS01975 43a4f1f5818db9d7e31fd8bfd648efda 227 PANTHER PTHR26402 5 227 5.1E-87 T 23-04-2016 RPE_RS01975 43a4f1f5818db9d7e31fd8bfd648efda 227 Pfam PF00072 Response regulator receiver domain 7 118 1.0E-24 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS01975 43a4f1f5818db9d7e31fd8bfd648efda 227 Gene3D G3DSA:1.10.10.10 128 226 1.2E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS01975 43a4f1f5818db9d7e31fd8bfd648efda 227 SMART SM00862 150 225 2.8E-17 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS01975 43a4f1f5818db9d7e31fd8bfd648efda 227 Gene3D G3DSA:3.40.50.2300 3 127 1.9E-35 T 23-04-2016 RPE_RS06725 7ce2b3b04d690db6b81e952d82a08fe3 477 Gene3D G3DSA:3.30.450.20 149 248 1.3E-10 T 23-04-2016 RPE_RS06725 7ce2b3b04d690db6b81e952d82a08fe3 477 SUPERFAMILY SSF55785 274 381 5.33E-6 T 23-04-2016 IPR000014 PAS domain RPE_RS06725 7ce2b3b04d690db6b81e952d82a08fe3 477 SUPERFAMILY SSF46689 400 465 5.38E-14 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS06725 7ce2b3b04d690db6b81e952d82a08fe3 477 TIGRFAM TIGR02040 PpsR-CrtJ: transcriptional regulator PpsR 22 465 5.7E-148 T 23-04-2016 IPR011785 Transcription regulator PpsR UniPathway: UPA00683 RPE_RS06725 7ce2b3b04d690db6b81e952d82a08fe3 477 SUPERFAMILY SSF55785 147 248 9.33E-9 T 23-04-2016 IPR000014 PAS domain RPE_RS06725 7ce2b3b04d690db6b81e952d82a08fe3 477 SMART SM00091 155 222 2.0E-4 T 23-04-2016 IPR000014 PAS domain RPE_RS06725 7ce2b3b04d690db6b81e952d82a08fe3 477 SMART SM00091 275 341 0.063 T 23-04-2016 IPR000014 PAS domain RPE_RS06725 7ce2b3b04d690db6b81e952d82a08fe3 477 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 446 466 2.2E-10 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RPE_RS06725 7ce2b3b04d690db6b81e952d82a08fe3 477 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 429 446 2.2E-10 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RPE_RS06725 7ce2b3b04d690db6b81e952d82a08fe3 477 Gene3D G3DSA:3.30.450.20 275 383 6.5E-7 T 23-04-2016 RPE_RS06725 7ce2b3b04d690db6b81e952d82a08fe3 477 Pfam PF13188 PAS domain 281 325 1.9E-4 T 23-04-2016 IPR000014 PAS domain RPE_RS06725 7ce2b3b04d690db6b81e952d82a08fe3 477 Pfam PF13188 PAS domain 156 192 6.8E-6 T 23-04-2016 IPR000014 PAS domain RPE_RS06725 7ce2b3b04d690db6b81e952d82a08fe3 477 Pfam PF02954 Bacterial regulatory protein, Fis family 426 463 2.0E-11 T 23-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RPE_RS06725 7ce2b3b04d690db6b81e952d82a08fe3 477 Gene3D G3DSA:1.10.10.60 399 465 4.0E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS06160 605beb84e91af941ccffff05019a0e5b 263 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS06160 605beb84e91af941ccffff05019a0e5b 263 SMART SM00382 28 218 4.7E-19 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS06160 605beb84e91af941ccffff05019a0e5b 263 Pfam PF00005 ABC transporter 19 168 1.8E-32 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS06160 605beb84e91af941ccffff05019a0e5b 263 SUPERFAMILY SSF52540 4 218 6.63E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS06160 605beb84e91af941ccffff05019a0e5b 263 PANTHER PTHR24220 5 216 2.3E-81 T 23-04-2016 RPE_RS06160 605beb84e91af941ccffff05019a0e5b 263 Gene3D G3DSA:3.40.50.300 3 216 6.6E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14200 ac5633a6d1fd0b3e8fff2b11378b9ab3 113 SMART SM00411 8 97 1.5E-30 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RPE_RS14200 ac5633a6d1fd0b3e8fff2b11378b9ab3 113 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 7 99 1.5E-38 T 23-04-2016 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355|GO:0006417 RPE_RS14200 ac5633a6d1fd0b3e8fff2b11378b9ab3 113 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 53 72 - T 23-04-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 RPE_RS14200 ac5633a6d1fd0b3e8fff2b11378b9ab3 113 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 6 102 27.575 T 23-04-2016 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355|GO:0006417 RPE_RS14200 ac5633a6d1fd0b3e8fff2b11378b9ab3 113 PANTHER PTHR33175:SF2 8 99 2.2E-54 T 23-04-2016 RPE_RS14200 ac5633a6d1fd0b3e8fff2b11378b9ab3 113 Pfam PF00216 Bacterial DNA-binding protein 9 97 5.6E-27 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RPE_RS14200 ac5633a6d1fd0b3e8fff2b11378b9ab3 113 PRINTS PR01727 Prokaryotic integration host factor signature 65 78 6.3E-12 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RPE_RS14200 ac5633a6d1fd0b3e8fff2b11378b9ab3 113 PRINTS PR01727 Prokaryotic integration host factor signature 81 95 6.3E-12 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RPE_RS14200 ac5633a6d1fd0b3e8fff2b11378b9ab3 113 PRINTS PR01727 Prokaryotic integration host factor signature 47 62 6.3E-12 T 23-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RPE_RS14200 ac5633a6d1fd0b3e8fff2b11378b9ab3 113 PANTHER PTHR33175 8 99 2.2E-54 T 23-04-2016 RPE_RS14200 ac5633a6d1fd0b3e8fff2b11378b9ab3 113 Gene3D G3DSA:4.10.520.10 7 98 1.2E-28 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RPE_RS14200 ac5633a6d1fd0b3e8fff2b11378b9ab3 113 SUPERFAMILY SSF47729 9 99 8.24E-28 T 23-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RPE_RS02485 57643ac0b8de6d90475dedb151bb7c03 365 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 25 92 4.4E-21 T 23-04-2016 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RPE_RS02485 57643ac0b8de6d90475dedb151bb7c03 365 Gene3D G3DSA:3.30.930.10 14 350 1.6E-124 T 23-04-2016 RPE_RS02485 57643ac0b8de6d90475dedb151bb7c03 365 SUPERFAMILY SSF46589 17 104 3.35E-20 T 23-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 RPE_RS02485 57643ac0b8de6d90475dedb151bb7c03 365 PANTHER PTHR11538 97 347 2.4E-97 T 23-04-2016 RPE_RS02485 57643ac0b8de6d90475dedb151bb7c03 365 Pfam PF01409 tRNA synthetases class II core domain (F) 97 348 4.2E-102 T 23-04-2016 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 RPE_RS02485 57643ac0b8de6d90475dedb151bb7c03 365 SUPERFAMILY SSF55681 109 350 4.44E-77 T 23-04-2016 RPE_RS02485 57643ac0b8de6d90475dedb151bb7c03 365 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 45 348 4.3E-99 T 23-04-2016 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RPE_RS02485 57643ac0b8de6d90475dedb151bb7c03 365 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 13 349 44.758 T 23-04-2016 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 RPE_RS12325 fc95f0cc39532a6b820ec77a1927b71e 566 SUPERFAMILY SSF58104 245 271 5.62E-60 T 23-04-2016 RPE_RS12325 fc95f0cc39532a6b820ec77a1927b71e 566 SUPERFAMILY SSF58104 312 559 5.62E-60 T 23-04-2016 RPE_RS12325 fc95f0cc39532a6b820ec77a1927b71e 566 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 334 363 1.1E-6 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS12325 fc95f0cc39532a6b820ec77a1927b71e 566 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 433 462 1.1E-6 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS12325 fc95f0cc39532a6b820ec77a1927b71e 566 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 481 510 1.1E-6 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS12325 fc95f0cc39532a6b820ec77a1927b71e 566 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 363 559 5.3E-36 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS12325 fc95f0cc39532a6b820ec77a1927b71e 566 Gene3D G3DSA:1.10.287.950 326 526 2.2E-47 T 23-04-2016 RPE_RS12325 fc95f0cc39532a6b820ec77a1927b71e 566 SMART SM00304 216 269 5.7E-10 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS12325 fc95f0cc39532a6b820ec77a1927b71e 566 SMART SM00283 306 560 7.7E-45 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS12325 fc95f0cc39532a6b820ec77a1927b71e 566 SMART SM01049 39 133 6.6E-37 T 23-04-2016 IPR033480 Single Cache domain 2 RPE_RS12325 fc95f0cc39532a6b820ec77a1927b71e 566 PANTHER PTHR32089:SF40 284 563 1.7E-196 T 23-04-2016 RPE_RS12325 fc95f0cc39532a6b820ec77a1927b71e 566 PANTHER PTHR32089:SF40 80 251 1.7E-196 T 23-04-2016 RPE_RS12325 fc95f0cc39532a6b820ec77a1927b71e 566 Pfam PF17200 Single Cache domain 2 42 191 2.0E-42 T 23-04-2016 IPR033480 Single Cache domain 2 RPE_RS12325 fc95f0cc39532a6b820ec77a1927b71e 566 Pfam PF00672 HAMP domain 197 265 4.3E-14 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS12325 fc95f0cc39532a6b820ec77a1927b71e 566 Gene3D G3DSA:3.30.450.20 29 186 3.3E-48 T 23-04-2016 RPE_RS12325 fc95f0cc39532a6b820ec77a1927b71e 566 PANTHER PTHR32089 284 563 1.7E-196 T 23-04-2016 RPE_RS12325 fc95f0cc39532a6b820ec77a1927b71e 566 PANTHER PTHR32089 80 251 1.7E-196 T 23-04-2016 RPE_RS08135 02e4ee544ee274d747e4421a1ff88a30 78 PIRSF PIRSF003113 1 78 1.7E-19 T 23-04-2016 IPR002634 BolA protein RPE_RS08135 02e4ee544ee274d747e4421a1ff88a30 78 Pfam PF01722 BolA-like protein 27 77 3.1E-14 T 23-04-2016 IPR002634 BolA protein RPE_RS08135 02e4ee544ee274d747e4421a1ff88a30 78 SUPERFAMILY SSF82657 1 77 2.09E-23 T 23-04-2016 IPR002634 BolA protein RPE_RS08135 02e4ee544ee274d747e4421a1ff88a30 78 Gene3D G3DSA:3.30.300.90 1 77 6.7E-22 T 23-04-2016 IPR002634 BolA protein RPE_RS08135 02e4ee544ee274d747e4421a1ff88a30 78 PANTHER PTHR12735 1 77 6.5E-15 T 23-04-2016 RPE_RS02730 8e9367fb30818a389da968fa83a2877a 435 Gene3D G3DSA:3.40.190.10 157 353 1.4E-36 T 23-04-2016 RPE_RS02730 8e9367fb30818a389da968fa83a2877a 435 Gene3D G3DSA:3.40.190.10 39 156 6.8E-9 T 23-04-2016 RPE_RS02730 8e9367fb30818a389da968fa83a2877a 435 PANTHER PTHR30061 6 433 1.3E-142 T 23-04-2016 RPE_RS02730 8e9367fb30818a389da968fa83a2877a 435 PANTHER PTHR30061:SF7 6 433 1.3E-142 T 23-04-2016 RPE_RS02730 8e9367fb30818a389da968fa83a2877a 435 Pfam PF13416 Bacterial extracellular solute-binding protein 41 353 7.4E-35 T 23-04-2016 RPE_RS02730 8e9367fb30818a389da968fa83a2877a 435 SUPERFAMILY SSF53850 24 423 3.59E-65 T 23-04-2016 RPE_RS11210 09ca22884ccf283e5b71cc04e1c2bb03 178 Gene3D G3DSA:3.40.50.300 7 171 1.3E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS11210 09ca22884ccf283e5b71cc04e1c2bb03 178 SUPERFAMILY SSF52540 7 171 7.44E-49 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS11210 09ca22884ccf283e5b71cc04e1c2bb03 178 PIRSF PIRSF006135 5 173 4.7E-52 T 23-04-2016 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00030+2.7.1.15|KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148|UniPathway: UPA00148 RPE_RS11210 09ca22884ccf283e5b71cc04e1c2bb03 178 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 7 168 5.7E-57 T 23-04-2016 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00030+2.7.1.15|KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148|UniPathway: UPA00148 RPE_RS11210 09ca22884ccf283e5b71cc04e1c2bb03 178 PANTHER PTHR34848 7 173 1.0E-68 T 23-04-2016 RPE_RS08645 f95fdbb414b12dcb7d9cf18b9875ece4 166 PANTHER PTHR33269:SF2 9 164 6.4E-37 T 23-04-2016 RPE_RS08645 f95fdbb414b12dcb7d9cf18b9875ece4 166 PANTHER PTHR33269 9 164 6.4E-37 T 23-04-2016 RPE_RS08645 f95fdbb414b12dcb7d9cf18b9875ece4 166 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 17 154 5.6E-28 T 23-04-2016 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 RPE_RS09080 ddbb099b3636821241bac78fda21199b 154 Pfam PF17200 Single Cache domain 2 30 144 7.3E-14 T 23-04-2016 IPR033480 Single Cache domain 2 RPE_RS09080 ddbb099b3636821241bac78fda21199b 154 SMART SM01049 24 106 3.2E-6 T 23-04-2016 IPR033480 Single Cache domain 2 RPE_RS09080 ddbb099b3636821241bac78fda21199b 154 Gene3D G3DSA:3.30.450.20 30 152 1.6E-20 T 23-04-2016 RPE_RS12685 dc419550c62878fa70e09941d9f4658e 69 SUPERFAMILY SSF57997 16 67 1.37E-5 T 23-04-2016 RPE_RS12685 dc419550c62878fa70e09941d9f4658e 69 Gene3D G3DSA:1.20.5.340 18 64 2.5E-4 T 23-04-2016 RPE_RS03430 2b7a120561532b36e3a2f7227d341ecd 315 Pfam PF12146 Serine aminopeptidase, S33 39 294 5.4E-42 T 23-04-2016 IPR022742 Serine aminopeptidase, S33 RPE_RS03430 2b7a120561532b36e3a2f7227d341ecd 315 PANTHER PTHR11614:SF100 17 307 3.2E-106 T 23-04-2016 RPE_RS03430 2b7a120561532b36e3a2f7227d341ecd 315 SUPERFAMILY SSF53474 9 308 8.64E-35 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS03430 2b7a120561532b36e3a2f7227d341ecd 315 Gene3D G3DSA:3.40.50.1820 19 155 1.1E-30 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS03430 2b7a120561532b36e3a2f7227d341ecd 315 Gene3D G3DSA:3.40.50.1820 192 307 1.1E-30 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS03430 2b7a120561532b36e3a2f7227d341ecd 315 PANTHER PTHR11614 17 307 3.2E-106 T 23-04-2016 RPE_RS17300 fc5c40ec42f45f20e96f95bb099cdd5b 289 Pfam PF00149 Calcineurin-like phosphoesterase 33 230 7.9E-10 T 23-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 RPE_RS17300 fc5c40ec42f45f20e96f95bb099cdd5b 289 PANTHER PTHR34990:SF2 17 289 3.0E-144 T 23-04-2016 RPE_RS17300 fc5c40ec42f45f20e96f95bb099cdd5b 289 Gene3D G3DSA:3.60.21.10 214 267 3.4E-32 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RPE_RS17300 fc5c40ec42f45f20e96f95bb099cdd5b 289 Gene3D G3DSA:3.60.21.10 31 176 3.4E-32 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RPE_RS17300 fc5c40ec42f45f20e96f95bb099cdd5b 289 PANTHER PTHR34990 17 289 3.0E-144 T 23-04-2016 RPE_RS17300 fc5c40ec42f45f20e96f95bb099cdd5b 289 SUPERFAMILY SSF56300 30 268 8.71E-30 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RPE_RS23625 1e244bd269b4a72a58c2626f0bc39f43 663 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 8 316 4.7E-132 T 23-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RPE_RS23625 1e244bd269b4a72a58c2626f0bc39f43 663 PANTHER PTHR11624:SF1 340 663 0.0 T 23-04-2016 RPE_RS23625 1e244bd269b4a72a58c2626f0bc39f43 663 PANTHER PTHR11624:SF1 2 309 0.0 T 23-04-2016 RPE_RS23625 1e244bd269b4a72a58c2626f0bc39f43 663 TIGRFAM TIGR00232 tktlase_bact: transketolase 9 656 4.4E-236 T 23-04-2016 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 RPE_RS23625 1e244bd269b4a72a58c2626f0bc39f43 663 Gene3D G3DSA:3.40.50.920 537 657 1.3E-34 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RPE_RS23625 1e244bd269b4a72a58c2626f0bc39f43 663 SUPERFAMILY SSF52518 7 317 3.61E-111 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS23625 1e244bd269b4a72a58c2626f0bc39f43 663 ProSitePatterns PS00802 Transketolase signature 2. 465 481 - T 23-04-2016 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RPE_RS23625 1e244bd269b4a72a58c2626f0bc39f43 663 SMART SM00861 352 524 5.8E-66 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RPE_RS23625 1e244bd269b4a72a58c2626f0bc39f43 663 Gene3D G3DSA:3.40.50.970 331 527 1.0E-74 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS23625 1e244bd269b4a72a58c2626f0bc39f43 663 Pfam PF02780 Transketolase, C-terminal domain 547 652 4.8E-8 T 23-04-2016 IPR033248 Transketolase, C-terminal domain RPE_RS23625 1e244bd269b4a72a58c2626f0bc39f43 663 Pfam PF02779 Transketolase, pyrimidine binding domain 351 522 4.4E-47 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RPE_RS23625 1e244bd269b4a72a58c2626f0bc39f43 663 PANTHER PTHR11624 340 663 0.0 T 23-04-2016 IPR033247 Transketolase family RPE_RS23625 1e244bd269b4a72a58c2626f0bc39f43 663 PANTHER PTHR11624 2 309 0.0 T 23-04-2016 IPR033247 Transketolase family RPE_RS23625 1e244bd269b4a72a58c2626f0bc39f43 663 SUPERFAMILY SSF52922 532 661 8.9E-35 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RPE_RS23625 1e244bd269b4a72a58c2626f0bc39f43 663 ProSitePatterns PS00801 Transketolase signature 1. 14 34 - T 23-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RPE_RS23625 1e244bd269b4a72a58c2626f0bc39f43 663 Gene3D G3DSA:3.40.50.970 8 316 1.4E-118 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS23625 1e244bd269b4a72a58c2626f0bc39f43 663 SUPERFAMILY SSF52518 347 524 2.73E-67 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS15560 0c398e90e3cb420a5463d8e3245495e9 331 SUPERFAMILY SSF143631 36 321 1.28E-72 T 23-04-2016 IPR003374 ApbE-like domain RPE_RS15560 0c398e90e3cb420a5463d8e3245495e9 331 PANTHER PTHR30040 1 320 2.3E-95 T 23-04-2016 RPE_RS15560 0c398e90e3cb420a5463d8e3245495e9 331 PANTHER PTHR30040:SF2 1 320 2.3E-95 T 23-04-2016 IPR024932 Flavin transferase ApbE GO:0017013 RPE_RS15560 0c398e90e3cb420a5463d8e3245495e9 331 PIRSF PIRSF006268 6 327 2.6E-58 T 23-04-2016 IPR024932 Flavin transferase ApbE GO:0017013 RPE_RS15560 0c398e90e3cb420a5463d8e3245495e9 331 Pfam PF02424 ApbE family 45 319 4.0E-60 T 23-04-2016 IPR024932 Flavin transferase ApbE GO:0017013 RPE_RS07580 2162accceb24a0f97424742f0a6ef2af 237 SUPERFAMILY SSF51569 9 232 2.81E-49 T 23-04-2016 RPE_RS07580 2162accceb24a0f97424742f0a6ef2af 237 PANTHER PTHR10683:SF13 6 237 1.1E-85 T 23-04-2016 RPE_RS07580 2162accceb24a0f97424742f0a6ef2af 237 PANTHER PTHR10683 6 237 1.1E-85 T 23-04-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RPE_RS07580 2162accceb24a0f97424742f0a6ef2af 237 TIGRFAM TIGR02134 transald_staph: transaldolase 5 237 7.7E-102 T 23-04-2016 IPR011861 Transaldolase, Staphylococcus-type RPE_RS07580 2162accceb24a0f97424742f0a6ef2af 237 Pfam PF00923 Transaldolase 11 225 1.8E-37 T 23-04-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 RPE_RS07580 2162accceb24a0f97424742f0a6ef2af 237 Gene3D G3DSA:3.20.20.70 10 213 5.5E-36 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS03370 6edf0748dff3eeadc24ce1bf6be178dc 738 SUPERFAMILY SSF51735 326 508 5.92E-53 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS03370 6edf0748dff3eeadc24ce1bf6be178dc 738 SUPERFAMILY SSF48179 638 727 5.78E-20 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RPE_RS03370 6edf0748dff3eeadc24ce1bf6be178dc 738 SUPERFAMILY SSF48179 509 652 5.95E-22 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RPE_RS03370 6edf0748dff3eeadc24ce1bf6be178dc 738 Gene3D G3DSA:1.10.1040.10 649 727 2.7E-14 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RPE_RS03370 6edf0748dff3eeadc24ce1bf6be178dc 738 Gene3D G3DSA:3.90.226.10 247 305 1.9E-63 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS03370 6edf0748dff3eeadc24ce1bf6be178dc 738 Gene3D G3DSA:3.90.226.10 2 214 1.9E-63 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS03370 6edf0748dff3eeadc24ce1bf6be178dc 738 SUPERFAMILY SSF52096 1 320 8.76E-67 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS03370 6edf0748dff3eeadc24ce1bf6be178dc 738 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 214 4.4E-37 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RPE_RS03370 6edf0748dff3eeadc24ce1bf6be178dc 738 PANTHER PTHR23309 6 732 0.0 T 23-04-2016 RPE_RS03370 6edf0748dff3eeadc24ce1bf6be178dc 738 PANTHER PTHR23309:SF6 6 732 0.0 T 23-04-2016 RPE_RS03370 6edf0748dff3eeadc24ce1bf6be178dc 738 Gene3D G3DSA:1.10.1040.10 512 608 1.3E-19 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RPE_RS03370 6edf0748dff3eeadc24ce1bf6be178dc 738 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 510 607 3.7E-21 T 23-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 RPE_RS03370 6edf0748dff3eeadc24ce1bf6be178dc 738 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 329 507 1.1E-58 T 23-04-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 RPE_RS03370 6edf0748dff3eeadc24ce1bf6be178dc 738 Gene3D G3DSA:3.40.50.720 319 511 6.0E-55 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS14040 1e46271fa7ec76e4e453a46754acfe18 110 PANTHER PTHR31350:SF6 1 106 2.5E-55 T 23-04-2016 RPE_RS14040 1e46271fa7ec76e4e453a46754acfe18 110 Pfam PF08755 Hemimethylated DNA-binding protein YccV like 8 96 3.8E-26 T 23-04-2016 IPR011722 Hemimethylated DNA-binding domain GO:0003677 RPE_RS14040 1e46271fa7ec76e4e453a46754acfe18 110 PANTHER PTHR31350 1 106 2.5E-55 T 23-04-2016 RPE_RS14040 1e46271fa7ec76e4e453a46754acfe18 110 SMART SM00992 6 105 1.3E-57 T 23-04-2016 IPR011722 Hemimethylated DNA-binding domain GO:0003677 RPE_RS14040 1e46271fa7ec76e4e453a46754acfe18 110 TIGRFAM TIGR02097 yccV: hemimethylated DNA binding domain 7 104 9.5E-38 T 23-04-2016 IPR011722 Hemimethylated DNA-binding domain GO:0003677 RPE_RS14040 1e46271fa7ec76e4e453a46754acfe18 110 SUPERFAMILY SSF141255 7 97 6.93E-34 T 23-04-2016 IPR011722 Hemimethylated DNA-binding domain GO:0003677 RPE_RS08755 2a316a0fab89fc801dae7e62763ad652 104 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 25 99 2.3E-7 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS08755 2a316a0fab89fc801dae7e62763ad652 104 PANTHER PTHR37823 16 104 6.4E-16 T 23-04-2016 RPE_RS08755 2a316a0fab89fc801dae7e62763ad652 104 Gene3D G3DSA:1.10.760.10 9 103 1.2E-11 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS08755 2a316a0fab89fc801dae7e62763ad652 104 SUPERFAMILY SSF46626 2 103 1.06E-17 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS12180 c327302f2af79632c7899643ba95ff00 611 Pfam PF06527 TniQ 2 135 7.3E-17 T 23-04-2016 IPR009492 TniQ RPE_RS09660 128094c46f4ba2a748bc51e478c14b6c 147 TIGRFAM TIGR02219 phage_NlpC_fam: putative phage cell wall peptidase, NlpC/P60 family 11 144 6.0E-67 T 23-04-2016 IPR011929 NlpC/P60 family, putative phage cell wall peptidase RPE_RS09660 128094c46f4ba2a748bc51e478c14b6c 147 Gene3D G3DSA:3.90.1720.10 7 144 7.9E-30 T 23-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RPE_RS09660 128094c46f4ba2a748bc51e478c14b6c 147 SUPERFAMILY SSF54001 5 141 8.5E-19 T 23-04-2016 RPE_RS09660 128094c46f4ba2a748bc51e478c14b6c 147 Pfam PF00877 NlpC/P60 family 20 140 1.0E-7 T 23-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RPE_RS10670 72ad0fefba19a584212ecc04bef28ed7 198 SUPERFAMILY SSF140931 23 195 1.27E-29 T 23-04-2016 IPR003812 Fido domain RPE_RS10670 72ad0fefba19a584212ecc04bef28ed7 198 Gene3D G3DSA:1.10.3290.10 39 197 1.2E-27 T 23-04-2016 IPR003812 Fido domain RPE_RS10670 72ad0fefba19a584212ecc04bef28ed7 198 PANTHER PTHR13504 63 197 4.1E-17 T 23-04-2016 RPE_RS10670 72ad0fefba19a584212ecc04bef28ed7 198 Pfam PF02661 Fic/DOC family 43 136 3.2E-17 T 23-04-2016 IPR003812 Fido domain RPE_RS14920 faec868fa05ddd086993bd11933df365 215 SUPERFAMILY SSF53474 4 209 1.62E-51 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS14920 faec868fa05ddd086993bd11933df365 215 PANTHER PTHR12277 27 210 7.0E-52 T 23-04-2016 RPE_RS14920 faec868fa05ddd086993bd11933df365 215 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 17 138 4.0E-10 T 23-04-2016 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 RPE_RS14920 faec868fa05ddd086993bd11933df365 215 Gene3D G3DSA:3.40.50.1820 3 211 5.6E-64 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS14920 faec868fa05ddd086993bd11933df365 215 PANTHER PTHR12277:SF79 27 210 7.0E-52 T 23-04-2016 RPE_RS03685 b6f1c3d23b32aaf51ed7a45c9403964a 546 SUPERFAMILY SSF52374 22 340 2.58E-54 T 23-04-2016 RPE_RS03685 b6f1c3d23b32aaf51ed7a45c9403964a 546 SUPERFAMILY SSF48163 339 542 3.27E-39 T 23-04-2016 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RPE_RS03685 b6f1c3d23b32aaf51ed7a45c9403964a 546 Gene3D G3DSA:3.40.50.620 288 329 5.1E-4 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS03685 b6f1c3d23b32aaf51ed7a45c9403964a 546 Hamap MF_00177 Lysine--tRNA ligase [lysS]. 21 542 29.692 T 23-04-2016 IPR002904 Lysine-tRNA ligase GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 RPE_RS03685 b6f1c3d23b32aaf51ed7a45c9403964a 546 Pfam PF01921 tRNA synthetases class I (K) 22 375 1.1E-130 T 23-04-2016 RPE_RS03685 b6f1c3d23b32aaf51ed7a45c9403964a 546 PANTHER PTHR37940 12 546 9.7E-174 T 23-04-2016 RPE_RS03685 b6f1c3d23b32aaf51ed7a45c9403964a 546 Gene3D G3DSA:3.40.50.620 23 203 9.6E-42 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS03685 b6f1c3d23b32aaf51ed7a45c9403964a 546 Gene3D G3DSA:3.40.50.620 241 287 9.6E-42 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS03685 b6f1c3d23b32aaf51ed7a45c9403964a 546 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 51 60 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS03685 b6f1c3d23b32aaf51ed7a45c9403964a 546 Gene3D G3DSA:1.10.10.350 436 542 8.6E-31 T 23-04-2016 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RPE_RS03685 b6f1c3d23b32aaf51ed7a45c9403964a 546 TIGRFAM TIGR00467 lysS_arch: lysine--tRNA ligase 35 531 6.0E-49 T 23-04-2016 IPR002904 Lysine-tRNA ligase GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 RPE_RS09685 3a056ea9b847886287704e52f050ecc7 231 PANTHER PTHR26402:SF316 1 221 9.8E-101 T 23-04-2016 RPE_RS09685 3a056ea9b847886287704e52f050ecc7 231 Gene3D G3DSA:3.40.50.2300 2 122 3.7E-37 T 23-04-2016 RPE_RS09685 3a056ea9b847886287704e52f050ecc7 231 SUPERFAMILY SSF52172 2 129 2.7E-38 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS09685 3a056ea9b847886287704e52f050ecc7 231 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 216 1.0E-23 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS09685 3a056ea9b847886287704e52f050ecc7 231 Gene3D G3DSA:1.10.10.10 123 219 2.7E-30 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS09685 3a056ea9b847886287704e52f050ecc7 231 Pfam PF00072 Response regulator receiver domain 4 112 7.5E-25 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS09685 3a056ea9b847886287704e52f050ecc7 231 PANTHER PTHR26402 1 221 9.8E-101 T 23-04-2016 RPE_RS09685 3a056ea9b847886287704e52f050ecc7 231 SMART SM00448 1 112 5.5E-39 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS09685 3a056ea9b847886287704e52f050ecc7 231 SUPERFAMILY SSF46894 118 217 6.52E-28 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RPE_RS09685 3a056ea9b847886287704e52f050ecc7 231 SMART SM00862 145 216 1.7E-25 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS02405 fb2ed48e74a455238e1c238e310ea0b7 370 SUPERFAMILY SSF53659 3 367 5.95E-109 T 23-04-2016 RPE_RS02405 fb2ed48e74a455238e1c238e310ea0b7 370 SMART SM01329 5 361 3.9E-171 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RPE_RS02405 fb2ed48e74a455238e1c238e310ea0b7 370 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 6 361 1.7E-126 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RPE_RS02405 fb2ed48e74a455238e1c238e310ea0b7 370 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 4 365 46.299 T 23-04-2016 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396|UniPathway: UPA00048 RPE_RS02405 fb2ed48e74a455238e1c238e310ea0b7 370 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 6 360 1.2E-132 T 23-04-2016 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396|UniPathway: UPA00048 RPE_RS02405 fb2ed48e74a455238e1c238e310ea0b7 370 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 246 265 - T 23-04-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 RPE_RS02405 fb2ed48e74a455238e1c238e310ea0b7 370 PANTHER PTHR11835 3 369 1.2E-172 T 23-04-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 RPE_RS02405 fb2ed48e74a455238e1c238e310ea0b7 370 PANTHER PTHR11835:SF35 3 369 1.2E-172 T 23-04-2016 RPE_RS02405 fb2ed48e74a455238e1c238e310ea0b7 370 Gene3D G3DSA:3.40.718.10 2 366 2.4E-116 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RPE_RS22620 bf0a06b38e676b3356fbfbb2e3d086bf 457 PANTHER PTHR33712 223 447 1.4E-130 T 23-04-2016 RPE_RS22620 bf0a06b38e676b3356fbfbb2e3d086bf 457 PANTHER PTHR33712 9 204 1.4E-130 T 23-04-2016 RPE_RS22620 bf0a06b38e676b3356fbfbb2e3d086bf 457 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 37 44 - T 23-04-2016 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 RPE_RS22620 bf0a06b38e676b3356fbfbb2e3d086bf 457 Gene3D G3DSA:3.40.50.1980 19 160 7.0E-44 T 23-04-2016 RPE_RS22620 bf0a06b38e676b3356fbfbb2e3d086bf 457 Gene3D G3DSA:3.40.50.1980 166 264 9.8E-32 T 23-04-2016 RPE_RS22620 bf0a06b38e676b3356fbfbb2e3d086bf 457 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 19 427 4.8E-114 T 23-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 RPE_RS22620 bf0a06b38e676b3356fbfbb2e3d086bf 457 PANTHER PTHR33712:SF2 223 447 1.4E-130 T 23-04-2016 RPE_RS22620 bf0a06b38e676b3356fbfbb2e3d086bf 457 PANTHER PTHR33712:SF2 9 204 1.4E-130 T 23-04-2016 RPE_RS22620 bf0a06b38e676b3356fbfbb2e3d086bf 457 TIGRFAM TIGR01285 nifN: nitrogenase molybdenum-iron cofactor biosynthesis protein NifN 2 429 2.4E-178 T 23-04-2016 IPR005975 Nitrogenase molybdenum-iron cofactor biosynthesis protein GO:0006461|GO:0009399 UniPathway: UPA00782 RPE_RS22620 bf0a06b38e676b3356fbfbb2e3d086bf 457 Gene3D G3DSA:3.40.50.1980 293 404 1.1E-30 T 23-04-2016 RPE_RS22620 bf0a06b38e676b3356fbfbb2e3d086bf 457 SUPERFAMILY SSF53807 6 434 7.52E-133 T 23-04-2016 RPE_RS05775 2d9c81180705ab138c0f4323055873fe 152 PANTHER PTHR33217:SF2 1 145 1.7E-43 T 23-04-2016 RPE_RS05775 2d9c81180705ab138c0f4323055873fe 152 PANTHER PTHR33217 1 145 1.7E-43 T 23-04-2016 RPE_RS05775 2d9c81180705ab138c0f4323055873fe 152 Pfam PF00872 Transposase, Mutator family 1 124 6.8E-38 T 23-04-2016 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 RPE_RS15905 0524076aef4c3572e10ec656caf14b73 472 Pfam PF01381 Helix-turn-helix 10 62 3.5E-12 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RPE_RS15905 0524076aef4c3572e10ec656caf14b73 472 Pfam PF09856 Predicted transcriptional regulator (DUF2083) 313 468 2.8E-70 T 23-04-2016 IPR018653 Domain of unknown function DUF2083,transcriptional regulator RPE_RS15905 0524076aef4c3572e10ec656caf14b73 472 PIRSF PIRSF019251 1 472 4.7E-191 T 23-04-2016 IPR026281 HTH-type transcriptional regulator RamB GO:0006355 RPE_RS15905 0524076aef4c3572e10ec656caf14b73 472 Pfam PF06114 Domain of unknown function (DUF955) 193 312 1.1E-16 T 23-04-2016 IPR010359 HTH domain, IrrE-type RPE_RS15905 0524076aef4c3572e10ec656caf14b73 472 SMART SM00530 9 64 3.3E-12 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RPE_RS15905 0524076aef4c3572e10ec656caf14b73 472 SUPERFAMILY SSF47413 3 69 7.24E-14 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS15905 0524076aef4c3572e10ec656caf14b73 472 Gene3D G3DSA:1.10.260.40 3 74 1.0E-17 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS10360 82f8c7b5be6beabb7d93dade4b852b23 76 Pfam PF14076 Domain of unknown function (DUF4258) 5 69 1.7E-9 T 23-04-2016 IPR025354 Protein of unknown function DUF4258 RPE_RS14280 354c1b9f729e7974c54eab62d8b69844 507 PANTHER PTHR30576 21 507 6.0E-278 T 23-04-2016 RPE_RS14280 354c1b9f729e7974c54eab62d8b69844 507 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 53 507 6.2E-140 T 23-04-2016 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase RPE_RS14280 354c1b9f729e7974c54eab62d8b69844 507 TIGRFAM TIGR03023 WcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase 53 507 2.0E-150 T 23-04-2016 IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ MetaCyc: PWY-6655|MetaCyc: PWY-6658 RPE_RS14280 354c1b9f729e7974c54eab62d8b69844 507 Gene3D G3DSA:3.40.50.720 177 262 3.3E-5 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS14280 354c1b9f729e7974c54eab62d8b69844 507 PANTHER PTHR30576:SF9 21 507 6.0E-278 T 23-04-2016 RPE_RS14280 354c1b9f729e7974c54eab62d8b69844 507 Pfam PF13727 CoA-binding domain 96 276 3.3E-55 T 23-04-2016 RPE_RS14280 354c1b9f729e7974c54eab62d8b69844 507 Pfam PF02397 Bacterial sugar transferase 312 501 1.1E-51 T 23-04-2016 IPR003362 Bacterial sugar transferase RPE_RS14280 354c1b9f729e7974c54eab62d8b69844 507 SUPERFAMILY SSF53335 142 291 5.48E-6 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS19890 39ca79bb68bd9e2d6738356c7e9cc5c3 201 PANTHER PTHR33169:SF2 34 132 5.1E-23 T 23-04-2016 RPE_RS19890 39ca79bb68bd9e2d6738356c7e9cc5c3 201 Gene3D G3DSA:1.10.10.10 35 136 1.5E-27 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS19890 39ca79bb68bd9e2d6738356c7e9cc5c3 201 SUPERFAMILY SSF46785 46 147 4.34E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS19890 39ca79bb68bd9e2d6738356c7e9cc5c3 201 PANTHER PTHR33169 34 132 5.1E-23 T 23-04-2016 RPE_RS19890 39ca79bb68bd9e2d6738356c7e9cc5c3 201 Pfam PF03551 Transcriptional regulator PadR-like family 51 119 6.9E-17 T 23-04-2016 IPR005149 Transcription regulator PadR, N-terminal RPE_RS16095 843362a3f5368fbd012961470d9c6423 396 Gene3D G3DSA:3.30.1540.10 227 307 4.2E-16 T 23-04-2016 RPE_RS16095 843362a3f5368fbd012961470d9c6423 396 SUPERFAMILY SSF89796 5 395 1.83E-79 T 23-04-2016 IPR023606 CoA-transferase family III domain RPE_RS16095 843362a3f5368fbd012961470d9c6423 396 PANTHER PTHR24023:SF593 46 382 7.5E-12 T 23-04-2016 RPE_RS16095 843362a3f5368fbd012961470d9c6423 396 Pfam PF02515 CoA-transferase family III 5 372 2.7E-70 T 23-04-2016 IPR003673 CoA-transferase family III GO:0003824 RPE_RS16095 843362a3f5368fbd012961470d9c6423 396 Gene3D G3DSA:3.40.50.10540 5 218 1.9E-62 T 23-04-2016 IPR023606 CoA-transferase family III domain RPE_RS16095 843362a3f5368fbd012961470d9c6423 396 Gene3D G3DSA:3.40.50.10540 308 395 1.9E-62 T 23-04-2016 IPR023606 CoA-transferase family III domain RPE_RS16095 843362a3f5368fbd012961470d9c6423 396 PANTHER PTHR24023 46 382 7.5E-12 T 23-04-2016 RPE_RS01350 d7d0dfd9c431a410130e85eb608237e5 118 Pfam PF02410 Ribosomal silencing factor during starvation 14 108 2.8E-27 T 23-04-2016 RPE_RS01350 d7d0dfd9c431a410130e85eb608237e5 118 PANTHER PTHR21043 11 112 4.2E-41 T 23-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS RPE_RS01350 d7d0dfd9c431a410130e85eb608237e5 118 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 11 108 6.9E-36 T 23-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS RPE_RS01350 d7d0dfd9c431a410130e85eb608237e5 118 SUPERFAMILY SSF81301 8 113 2.29E-38 T 23-04-2016 RPE_RS01350 d7d0dfd9c431a410130e85eb608237e5 118 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 7 109 25.26 T 23-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS RPE_RS01350 d7d0dfd9c431a410130e85eb608237e5 118 Gene3D G3DSA:3.30.460.10 8 110 5.9E-37 T 23-04-2016 RPE_RS19490 7996dffaa860613846fe8fb84c170f30 231 Pfam PF01988 VIT family 17 224 2.6E-54 T 23-04-2016 IPR008217 Ccc1 family RPE_RS19490 7996dffaa860613846fe8fb84c170f30 231 PANTHER PTHR31851 6 227 1.8E-61 T 23-04-2016 RPE_RS05345 4da8529ac87d68e230048f7fa0b62e29 141 Gene3D G3DSA:3.10.490.10 14 137 9.5E-24 T 23-04-2016 IPR013024 Butirosin biosynthesis, BtrG-like RPE_RS05345 4da8529ac87d68e230048f7fa0b62e29 141 SUPERFAMILY SSF110857 15 138 3.27E-21 T 23-04-2016 IPR013024 Butirosin biosynthesis, BtrG-like RPE_RS05345 4da8529ac87d68e230048f7fa0b62e29 141 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 16 138 4.9E-19 T 23-04-2016 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like RPE_RS04690 7dded0343a42ec64757ee7039dabcec9 148 Gene3D G3DSA:3.40.140.10 3 146 4.5E-57 T 23-04-2016 RPE_RS04690 7dded0343a42ec64757ee7039dabcec9 148 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 7 148 47.966 T 23-04-2016 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 RPE_RS04690 7dded0343a42ec64757ee7039dabcec9 148 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 52 89 - T 23-04-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 RPE_RS04690 7dded0343a42ec64757ee7039dabcec9 148 SUPERFAMILY SSF53927 5 148 6.86E-53 T 23-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 RPE_RS04690 7dded0343a42ec64757ee7039dabcec9 148 Pfam PF14437 MafB19-like deaminase 5 106 9.7E-32 T 23-04-2016 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 RPE_RS04690 7dded0343a42ec64757ee7039dabcec9 148 PANTHER PTHR11079 6 148 1.4E-44 T 23-04-2016 RPE_RS06040 8922b2027e9800be234e806ed4fdc345 121 Pfam PF00072 Response regulator receiver domain 5 116 1.4E-29 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS06040 8922b2027e9800be234e806ed4fdc345 121 PANTHER PTHR26402 3 119 4.7E-43 T 23-04-2016 RPE_RS06040 8922b2027e9800be234e806ed4fdc345 121 SMART SM00448 3 116 5.9E-39 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS06040 8922b2027e9800be234e806ed4fdc345 121 Gene3D G3DSA:3.40.50.2300 3 120 2.2E-38 T 23-04-2016 RPE_RS06040 8922b2027e9800be234e806ed4fdc345 121 SUPERFAMILY SSF52172 3 120 2.85E-37 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS08455 15dd1425628bc507c9917b6aec47019d 289 SUPERFAMILY SSF54593 1 199 6.53E-27 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RPE_RS08455 15dd1425628bc507c9917b6aec47019d 289 SUPERFAMILY SSF54593 156 278 2.81E-8 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RPE_RS08455 15dd1425628bc507c9917b6aec47019d 289 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 158 255 3.4E-9 T 23-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RPE_RS08455 15dd1425628bc507c9917b6aec47019d 289 Gene3D G3DSA:3.10.180.10 1 98 2.8E-13 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RPE_RS08455 15dd1425628bc507c9917b6aec47019d 289 Gene3D G3DSA:3.10.180.10 160 263 1.4E-14 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RPE_RS08455 15dd1425628bc507c9917b6aec47019d 289 Pfam PF13468 Glyoxalase-like domain 5 147 1.8E-14 T 23-04-2016 IPR025870 Glyoxalase-like domain RPE_RS02620 9b5fa136e549cef106bb28b4245057f8 217 Gene3D G3DSA:3.40.50.300 1 216 4.3E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02620 9b5fa136e549cef106bb28b4245057f8 217 Pfam PF00005 ABC transporter 21 166 1.9E-31 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS02620 9b5fa136e549cef106bb28b4245057f8 217 PANTHER PTHR24220:SF430 3 216 1.4E-94 T 23-04-2016 RPE_RS02620 9b5fa136e549cef106bb28b4245057f8 217 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS02620 9b5fa136e549cef106bb28b4245057f8 217 SUPERFAMILY SSF52540 1 216 2.52E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02620 9b5fa136e549cef106bb28b4245057f8 217 SMART SM00382 30 215 8.0E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS02620 9b5fa136e549cef106bb28b4245057f8 217 PANTHER PTHR24220 3 216 1.4E-94 T 23-04-2016 RPE_RS11090 f80ea84a2a8cfd70b08569e371d84f78 441 PANTHER PTHR33362 1 441 2.8E-214 T 23-04-2016 RPE_RS11090 f80ea84a2a8cfd70b08569e371d84f78 441 PANTHER PTHR33362:SF6 1 441 2.8E-214 T 23-04-2016 RPE_RS11090 f80ea84a2a8cfd70b08569e371d84f78 441 PIRSF PIRSF006066 1 441 6.4E-149 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RPE_RS11090 f80ea84a2a8cfd70b08569e371d84f78 441 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 430 1.7E-128 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RPE_RS11090 f80ea84a2a8cfd70b08569e371d84f78 441 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 435 2.0E-154 T 23-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 RPE_RS11310 242e5287afa2391ec7d201fa16fa3279 539 Pfam PF01039 Carboxyl transferase domain 48 531 7.2E-119 T 23-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RPE_RS11310 242e5287afa2391ec7d201fa16fa3279 539 PANTHER PTHR22855:SF29 1 539 0.0 T 23-04-2016 RPE_RS11310 242e5287afa2391ec7d201fa16fa3279 539 PANTHER PTHR22855 1 539 0.0 T 23-04-2016 RPE_RS11310 242e5287afa2391ec7d201fa16fa3279 539 SUPERFAMILY SSF52096 238 518 1.36E-75 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS11310 242e5287afa2391ec7d201fa16fa3279 539 Gene3D G3DSA:3.90.226.10 281 531 9.0E-73 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS11310 242e5287afa2391ec7d201fa16fa3279 539 Gene3D G3DSA:3.90.226.10 39 270 7.8E-51 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS11310 242e5287afa2391ec7d201fa16fa3279 539 SUPERFAMILY SSF52096 32 271 2.77E-54 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS09015 18bd3bc5d37d39715499f9f9bf05615c 714 PANTHER PTHR10668:SF4 156 699 4.7E-63 T 23-04-2016 RPE_RS09015 18bd3bc5d37d39715499f9f9bf05615c 714 SUPERFAMILY SSF51905 666 699 7.4E-46 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS09015 18bd3bc5d37d39715499f9f9bf05615c 714 SUPERFAMILY SSF51905 200 536 7.4E-46 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS09015 18bd3bc5d37d39715499f9f9bf05615c 714 PANTHER PTHR10668 156 699 4.7E-63 T 23-04-2016 RPE_RS09015 18bd3bc5d37d39715499f9f9bf05615c 714 Gene3D G3DSA:3.50.50.60 411 510 3.1E-34 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS09015 18bd3bc5d37d39715499f9f9bf05615c 714 Gene3D G3DSA:3.50.50.60 197 308 3.1E-34 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS09015 18bd3bc5d37d39715499f9f9bf05615c 714 Pfam PF01593 Flavin containing amine oxidoreductase 210 699 5.0E-13 T 23-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 RPE_RS04670 1564545f66de93d251c4b719e95975a4 155 SUPERFAMILY SSF54690 6 152 1.96E-49 T 23-04-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 RPE_RS04670 1564545f66de93d251c4b719e95975a4 155 Gene3D G3DSA:3.90.1170.40 5 152 2.6E-52 T 23-04-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 RPE_RS04670 1564545f66de93d251c4b719e95975a4 155 PANTHER PTHR23404 31 155 1.0E-37 T 23-04-2016 RPE_RS04670 1564545f66de93d251c4b719e95975a4 155 PANTHER PTHR23404:SF2 31 155 1.0E-37 T 23-04-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 RPE_RS04670 1564545f66de93d251c4b719e95975a4 155 Pfam PF02391 MoaE protein 9 122 1.0E-33 T 23-04-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 RPE_RS09460 a436791555b6217fd63d2d74e78ca111 192 Gene3D G3DSA:2.60.120.600 23 188 1.9E-28 T 23-04-2016 IPR010621 Domain of unknown function DUF1214 RPE_RS09460 a436791555b6217fd63d2d74e78ca111 192 Pfam PF06742 Protein of unknown function (DUF1214) 72 170 1.3E-22 T 23-04-2016 IPR010621 Domain of unknown function DUF1214 RPE_RS09460 a436791555b6217fd63d2d74e78ca111 192 SUPERFAMILY SSF160935 19 167 2.22E-27 T 23-04-2016 RPE_RS09460 a436791555b6217fd63d2d74e78ca111 192 PIRSF PIRSF009471 1 192 1.4E-70 T 23-04-2016 IPR012038 Uncharacterised conserved protein UCP009471 RPE_RS15935 fedd2f51fa0c9708daf0cbfdd04eca08 261 PIRSF PIRSF002854 1 261 7.2E-92 T 23-04-2016 IPR004872 Lipoprotein NlpA family RPE_RS15935 fedd2f51fa0c9708daf0cbfdd04eca08 261 PANTHER PTHR30429 1 261 2.3E-111 T 23-04-2016 IPR004872 Lipoprotein NlpA family RPE_RS15935 fedd2f51fa0c9708daf0cbfdd04eca08 261 Pfam PF03180 NLPA lipoprotein 27 261 1.5E-86 T 23-04-2016 IPR004872 Lipoprotein NlpA family RPE_RS15935 fedd2f51fa0c9708daf0cbfdd04eca08 261 SUPERFAMILY SSF53850 27 261 1.92E-80 T 23-04-2016 RPE_RS15935 fedd2f51fa0c9708daf0cbfdd04eca08 261 Gene3D G3DSA:3.40.190.10 25 154 1.8E-51 T 23-04-2016 RPE_RS08105 19359a1c395021a4ccff409a13c923b6 233 PIRSF PIRSF001586 1 232 5.4E-86 T 23-04-2016 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RPE_RS08105 19359a1c395021a4ccff409a13c923b6 233 Gene3D G3DSA:3.40.50.880 1 227 3.0E-38 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RPE_RS08105 19359a1c395021a4ccff409a13c923b6 233 Hamap MF_00421 Phosphoribosylformylglycinamidine synthase subunit PurQ [purQ]. 1 227 43.849 T 23-04-2016 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RPE_RS08105 19359a1c395021a4ccff409a13c923b6 233 SMART SM01211 1 229 2.7E-132 T 23-04-2016 RPE_RS08105 19359a1c395021a4ccff409a13c923b6 233 SUPERFAMILY SSF52317 1 226 3.06E-72 T 23-04-2016 IPR029062 Class I glutamine amidotransferase-like RPE_RS08105 19359a1c395021a4ccff409a13c923b6 233 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 2 214 5.0E-44 T 23-04-2016 RPE_RS08105 19359a1c395021a4ccff409a13c923b6 233 PANTHER PTHR10099 1 231 8.0E-116 T 23-04-2016 RPE_RS08105 19359a1c395021a4ccff409a13c923b6 233 TIGRFAM TIGR01737 FGAM_synth_I: phosphoribosylformylglycinamidine synthase I 1 227 8.5E-94 T 23-04-2016 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 RPE_RS17965 9455f4b572e890807d673e92c1832f45 240 Pfam PF00297 Ribosomal protein L3 97 182 7.8E-13 T 23-04-2016 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17965 9455f4b572e890807d673e92c1832f45 240 Gene3D G3DSA:2.40.30.10 4 33 3.5E-9 T 23-04-2016 RPE_RS17965 9455f4b572e890807d673e92c1832f45 240 Gene3D G3DSA:2.40.30.10 159 210 3.5E-9 T 23-04-2016 RPE_RS17965 9455f4b572e890807d673e92c1832f45 240 PANTHER PTHR11229 1 209 1.5E-110 T 23-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17965 9455f4b572e890807d673e92c1832f45 240 ProSitePatterns PS00474 Ribosomal protein L3 signature. 102 125 - T 23-04-2016 IPR019926 Ribosomal protein L3, conserved site RPE_RS17965 9455f4b572e890807d673e92c1832f45 240 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 2 208 34.868 T 23-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17965 9455f4b572e890807d673e92c1832f45 240 Gene3D G3DSA:4.10.960.10 77 158 6.4E-28 T 23-04-2016 RPE_RS17965 9455f4b572e890807d673e92c1832f45 240 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 4 205 9.1E-79 T 23-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17965 9455f4b572e890807d673e92c1832f45 240 SUPERFAMILY SSF50447 1 218 1.06E-77 T 23-04-2016 IPR009000 Translation protein, beta-barrel domain RPE_RS20870 c0489579bfa53e28932ccaf38d9cb72a 214 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 74 1.1E-14 T 23-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RPE_RS20870 c0489579bfa53e28932ccaf38d9cb72a 214 PANTHER PTHR11260 1 196 6.0E-46 T 23-04-2016 RPE_RS20870 c0489579bfa53e28932ccaf38d9cb72a 214 Gene3D G3DSA:3.40.30.10 1 90 7.3E-25 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS20870 c0489579bfa53e28932ccaf38d9cb72a 214 SUPERFAMILY SSF47616 78 197 7.23E-27 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RPE_RS20870 c0489579bfa53e28932ccaf38d9cb72a 214 PANTHER PTHR11260:SF143 1 196 6.0E-46 T 23-04-2016 RPE_RS20870 c0489579bfa53e28932ccaf38d9cb72a 214 Gene3D G3DSA:1.20.1050.10 91 203 1.0E-28 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RPE_RS20870 c0489579bfa53e28932ccaf38d9cb72a 214 SUPERFAMILY SSF52833 1 74 1.6E-21 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS20870 c0489579bfa53e28932ccaf38d9cb72a 214 Pfam PF00043 Glutathione S-transferase, C-terminal domain 131 193 1.0E-10 T 23-04-2016 IPR004046 Glutathione S-transferase, C-terminal RPE_RS01870 e7f8a8d6b45fc816feeb760a36891462 200 PANTHER PTHR35562:SF2 10 197 3.8E-41 T 23-04-2016 RPE_RS01870 e7f8a8d6b45fc816feeb760a36891462 200 Pfam PF01713 Smr domain 110 196 9.6E-23 T 23-04-2016 IPR002625 Smr domain RPE_RS01870 e7f8a8d6b45fc816feeb760a36891462 200 SUPERFAMILY SSF160443 108 195 4.71E-14 T 23-04-2016 IPR002625 Smr domain RPE_RS01870 e7f8a8d6b45fc816feeb760a36891462 200 PANTHER PTHR35562 10 197 3.8E-41 T 23-04-2016 RPE_RS01870 e7f8a8d6b45fc816feeb760a36891462 200 SMART SM00463 107 196 6.9E-4 T 23-04-2016 IPR002625 Smr domain RPE_RS09140 d9a681e376f1fa6fcc48ad80934444d6 382 Gene3D G3DSA:3.20.20.70 23 308 1.2E-42 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS09140 d9a681e376f1fa6fcc48ad80934444d6 382 TIGRFAM TIGR03470 HpnH: hopanoid biosynthesis associated radical SAM protein HpnH 1 316 8.4E-167 T 23-04-2016 IPR017833 Hopanoid biosynthesis associated radical SAM protein HpnH RPE_RS09140 d9a681e376f1fa6fcc48ad80934444d6 382 Pfam PF04055 Radical SAM superfamily 34 186 4.5E-13 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RPE_RS09140 d9a681e376f1fa6fcc48ad80934444d6 382 PANTHER PTHR11228 23 321 8.3E-97 T 23-04-2016 RPE_RS09140 d9a681e376f1fa6fcc48ad80934444d6 382 Pfam PF11946 Domain of unknown function (DUF3463) 194 326 6.2E-60 T 23-04-2016 IPR022563 Domain of unknown function DUF3463 RPE_RS09140 d9a681e376f1fa6fcc48ad80934444d6 382 SUPERFAMILY SSF102114 24 306 4.12E-51 T 23-04-2016 RPE_RS09140 d9a681e376f1fa6fcc48ad80934444d6 382 PANTHER PTHR11228:SF22 23 321 8.3E-97 T 23-04-2016 RPE_RS18705 98088ec885e8aa62d302da85678c2784 253 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 231 252 1.4E-6 T 23-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RPE_RS18705 98088ec885e8aa62d302da85678c2784 253 TIGRFAM TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD 12 253 4.1E-115 T 23-04-2016 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD RPE_RS18705 98088ec885e8aa62d302da85678c2784 253 SMART SM00382 37 247 7.8E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS18705 98088ec885e8aa62d302da85678c2784 253 PANTHER PTHR24220:SF366 14 253 2.2E-135 T 23-04-2016 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD RPE_RS18705 98088ec885e8aa62d302da85678c2784 253 PANTHER PTHR24220 14 253 2.2E-135 T 23-04-2016 RPE_RS18705 98088ec885e8aa62d302da85678c2784 253 Pfam PF00005 ABC transporter 29 183 2.4E-31 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS18705 98088ec885e8aa62d302da85678c2784 253 SUPERFAMILY SSF52540 12 251 4.22E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18705 98088ec885e8aa62d302da85678c2784 253 Gene3D G3DSA:3.40.50.300 11 250 6.1E-59 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12065 4166c1194561d7cc8d217a9912db2ef7 132 PANTHER PTHR12418:SF32 1 132 1.7E-59 T 23-04-2016 RPE_RS12065 4166c1194561d7cc8d217a9912db2ef7 132 Gene3D G3DSA:3.10.129.10 13 132 7.5E-38 T 23-04-2016 IPR029069 HotDog domain RPE_RS12065 4166c1194561d7cc8d217a9912db2ef7 132 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 14 130 1.8E-26 T 23-04-2016 IPR003736 Phenylacetic acid degradation-related domain RPE_RS12065 4166c1194561d7cc8d217a9912db2ef7 132 PANTHER PTHR12418 1 132 1.7E-59 T 23-04-2016 RPE_RS12065 4166c1194561d7cc8d217a9912db2ef7 132 SUPERFAMILY SSF54637 12 132 2.14E-31 T 23-04-2016 IPR029069 HotDog domain RPE_RS12065 4166c1194561d7cc8d217a9912db2ef7 132 Pfam PF03061 Thioesterase superfamily 45 123 1.5E-15 T 23-04-2016 IPR006683 Thioesterase domain RPE_RS06595 e0d7d02487dad4ad244663c0efce1015 591 SMART SM00327 406 584 2.4E-17 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS06595 e0d7d02487dad4ad244663c0efce1015 591 SUPERFAMILY SSF53300 409 569 3.56E-21 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS06595 e0d7d02487dad4ad244663c0efce1015 591 TIGRFAM TIGR02031 BchD-ChlD: magnesium chelatase ATPase subunit D 11 580 2.7E-157 T 23-04-2016 IPR011776 Magnesium chelatase, ATPase subunit D GO:0005524|GO:0015995|GO:0016851 KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RPE_RS06595 e0d7d02487dad4ad244663c0efce1015 591 Gene3D G3DSA:3.40.50.410 409 556 1.5E-14 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS06595 e0d7d02487dad4ad244663c0efce1015 591 Gene3D G3DSA:1.10.8.80 187 261 1.4E-9 T 23-04-2016 RPE_RS06595 e0d7d02487dad4ad244663c0efce1015 591 PANTHER PTHR10338 403 516 1.7E-34 T 23-04-2016 RPE_RS06595 e0d7d02487dad4ad244663c0efce1015 591 PANTHER PTHR10338 56 343 1.7E-34 T 23-04-2016 RPE_RS06595 e0d7d02487dad4ad244663c0efce1015 591 Pfam PF13519 von Willebrand factor type A domain 409 512 2.4E-14 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS06595 e0d7d02487dad4ad244663c0efce1015 591 Gene3D G3DSA:3.40.50.300 53 148 1.2E-11 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS06595 e0d7d02487dad4ad244663c0efce1015 591 PANTHER PTHR10338:SF126 403 516 1.7E-34 T 23-04-2016 RPE_RS06595 e0d7d02487dad4ad244663c0efce1015 591 PANTHER PTHR10338:SF126 56 343 1.7E-34 T 23-04-2016 RPE_RS06595 e0d7d02487dad4ad244663c0efce1015 591 SUPERFAMILY SSF52540 56 262 2.48E-19 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS00145 56839b5ea5841608f79126b3e901403f 254 Pfam PF08808 RES domain 65 219 2.4E-28 T 23-04-2016 IPR014914 RES domain RPE_RS00145 56839b5ea5841608f79126b3e901403f 254 SMART SM00953 72 209 5.2E-40 T 23-04-2016 IPR014914 RES domain RPE_RS22750 72ee4061d716b5d9ec7d4307397a056a 4065 SUPERFAMILY SSF51126 282 447 3.77E-31 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor RPE_RS22750 72ee4061d716b5d9ec7d4307397a056a 4065 SUPERFAMILY SSF51126 136 241 3.77E-31 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor RPE_RS22750 72ee4061d716b5d9ec7d4307397a056a 4065 SMART SM00912 120 237 2.6E-32 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal RPE_RS22750 72ee4061d716b5d9ec7d4307397a056a 4065 PANTHER PTHR12338:SF6 301 658 3.7E-41 T 23-04-2016 RPE_RS22750 72ee4061d716b5d9ec7d4307397a056a 4065 PANTHER PTHR12338:SF6 75 263 3.7E-41 T 23-04-2016 RPE_RS22750 72ee4061d716b5d9ec7d4307397a056a 4065 PANTHER PTHR12338 301 658 3.7E-41 T 23-04-2016 RPE_RS22750 72ee4061d716b5d9ec7d4307397a056a 4065 PANTHER PTHR12338 75 263 3.7E-41 T 23-04-2016 RPE_RS22750 72ee4061d716b5d9ec7d4307397a056a 4065 Pfam PF12545 Filamentous haemagglutinin family outer membrane protein 3843 3954 1.8E-29 T 23-04-2016 IPR021026 Filamentous haemagglutinin family outer membrane protein, domain of unknown function DUF3739 RPE_RS22750 72ee4061d716b5d9ec7d4307397a056a 4065 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 157 231 1.2E-20 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal RPE_RS22750 72ee4061d716b5d9ec7d4307397a056a 4065 Pfam PF05860 haemagglutination activity domain 140 231 9.8E-19 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal RPE_RS05980 e5df5c0ba9f2b1297486bd0327e086d9 248 PANTHER PTHR30065 1 246 8.5E-31 T 23-04-2016 RPE_RS05980 e5df5c0ba9f2b1297486bd0327e086d9 248 Pfam PF01311 Bacterial export proteins, family 1 10 242 1.6E-46 T 23-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RPE_RS05980 e5df5c0ba9f2b1297486bd0327e086d9 248 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 18 39 8.4E-18 T 23-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RPE_RS05980 e5df5c0ba9f2b1297486bd0327e086d9 248 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 80 99 8.4E-18 T 23-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RPE_RS05980 e5df5c0ba9f2b1297486bd0327e086d9 248 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 200 219 8.4E-18 T 23-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RPE_RS05980 e5df5c0ba9f2b1297486bd0327e086d9 248 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 178 200 8.4E-18 T 23-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RPE_RS12445 4f7aa7e2378839123747775db1c369f6 827 Gene3D G3DSA:3.40.50.300 186 187 2.4E-26 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12445 4f7aa7e2378839123747775db1c369f6 827 Gene3D G3DSA:3.40.50.300 499 639 2.4E-26 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12445 4f7aa7e2378839123747775db1c369f6 827 Gene3D G3DSA:3.40.50.300 129 142 2.4E-26 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12445 4f7aa7e2378839123747775db1c369f6 827 Gene3D G3DSA:3.40.50.300 7 66 2.4E-26 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12445 4f7aa7e2378839123747775db1c369f6 827 SUPERFAMILY SSF52540 433 638 5.77E-27 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12445 4f7aa7e2378839123747775db1c369f6 827 SUPERFAMILY SSF52540 6 187 5.77E-27 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12445 4f7aa7e2378839123747775db1c369f6 827 Pfam PF02463 RecF/RecN/SMC N terminal domain 7 635 6.1E-16 T 23-04-2016 IPR003395 RecF/RecN/SMC, N-terminal RPE_RS07285 7bffcfedf5c82b9def622697ca05f5ff 337 PANTHER PTHR10366 2 322 2.5E-101 T 23-04-2016 RPE_RS07285 7bffcfedf5c82b9def622697ca05f5ff 337 Gene3D G3DSA:3.90.25.10 254 322 1.1E-38 T 23-04-2016 RPE_RS07285 7bffcfedf5c82b9def622697ca05f5ff 337 Gene3D G3DSA:3.90.25.10 170 222 1.1E-38 T 23-04-2016 RPE_RS07285 7bffcfedf5c82b9def622697ca05f5ff 337 Gene3D G3DSA:3.40.50.720 1 169 8.1E-53 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS07285 7bffcfedf5c82b9def622697ca05f5ff 337 PANTHER PTHR10366:SF39 2 322 2.5E-101 T 23-04-2016 RPE_RS07285 7bffcfedf5c82b9def622697ca05f5ff 337 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 252 3.3E-55 T 23-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 RPE_RS07285 7bffcfedf5c82b9def622697ca05f5ff 337 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 3 324 2.5E-126 T 23-04-2016 IPR005886 UDP-glucose 4-epimerase GalE GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|UniPathway: UPA00214 RPE_RS07285 7bffcfedf5c82b9def622697ca05f5ff 337 SUPERFAMILY SSF51735 1 320 3.06E-93 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS20665 82f54a12ee9181ac8237243f96fe8934 101 Pfam PF12071 Protein of unknown function (DUF3551) 1 71 6.5E-27 T 23-04-2016 IPR021937 Protein of unknown function DUF3551 RPE_RS15455 6378a23c7e024506391dd48e5bb9ccab 165 Pfam PF03928 Haem-degrading 32 157 6.3E-26 T 23-04-2016 IPR005624 Haem-degrading RPE_RS15455 6378a23c7e024506391dd48e5bb9ccab 165 PANTHER PTHR34309:SF1 1 161 1.0E-28 T 23-04-2016 RPE_RS15455 6378a23c7e024506391dd48e5bb9ccab 165 SUPERFAMILY SSF143744 23 160 1.96E-35 T 23-04-2016 RPE_RS15455 6378a23c7e024506391dd48e5bb9ccab 165 PANTHER PTHR34309 1 161 1.0E-28 T 23-04-2016 RPE_RS03500 22616af94ba53c2329c09b8e3abf8223 467 SUPERFAMILY SSF47090 395 465 2.09E-16 T 23-04-2016 IPR002477 Peptidoglycan binding-like RPE_RS03500 22616af94ba53c2329c09b8e3abf8223 467 Pfam PF01471 Putative peptidoglycan binding domain 409 464 8.4E-12 T 23-04-2016 IPR002477 Peptidoglycan binding-like RPE_RS03500 22616af94ba53c2329c09b8e3abf8223 467 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 96 392 2.4E-103 T 23-04-2016 IPR011970 Lytic murein transglycosylase RPE_RS03500 22616af94ba53c2329c09b8e3abf8223 467 Gene3D G3DSA:1.10.101.10 410 465 4.6E-12 T 23-04-2016 IPR002477 Peptidoglycan binding-like RPE_RS03500 22616af94ba53c2329c09b8e3abf8223 467 Pfam PF13406 Transglycosylase SLT domain 97 388 3.3E-100 T 23-04-2016 IPR031304 Transglycosylase SLT domain 2 RPE_RS03500 22616af94ba53c2329c09b8e3abf8223 467 Gene3D G3DSA:1.10.530.10 140 197 1.1E-53 T 23-04-2016 RPE_RS03500 22616af94ba53c2329c09b8e3abf8223 467 Gene3D G3DSA:1.10.530.10 278 393 1.1E-53 T 23-04-2016 RPE_RS03500 22616af94ba53c2329c09b8e3abf8223 467 SUPERFAMILY SSF53955 88 395 4.69E-92 T 23-04-2016 IPR023346 Lysozyme-like domain RPE_RS03500 22616af94ba53c2329c09b8e3abf8223 467 PANTHER PTHR30163 81 466 7.4E-245 T 23-04-2016 IPR011757 Lytic transglycosylase MltB RPE_RS03500 22616af94ba53c2329c09b8e3abf8223 467 PANTHER PTHR30163:SF4 81 466 7.4E-245 T 23-04-2016 RPE_RS10720 a4250100448cf3b6989f9a161d08aed5 846 PANTHER PTHR11070 35 276 2.7E-209 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RPE_RS10720 a4250100448cf3b6989f9a161d08aed5 846 PANTHER PTHR11070 319 719 2.7E-209 T 23-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RPE_RS10720 a4250100448cf3b6989f9a161d08aed5 846 Pfam PF13361 UvrD-like helicase C-terminal domain 357 681 2.1E-61 T 23-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RPE_RS10720 a4250100448cf3b6989f9a161d08aed5 846 Gene3D G3DSA:3.40.50.300 622 715 6.2E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10720 a4250100448cf3b6989f9a161d08aed5 846 Gene3D G3DSA:3.40.50.300 366 467 6.2E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10720 a4250100448cf3b6989f9a161d08aed5 846 SUPERFAMILY SSF52540 321 714 4.12E-170 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10720 a4250100448cf3b6989f9a161d08aed5 846 SUPERFAMILY SSF52540 34 275 4.12E-170 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10720 a4250100448cf3b6989f9a161d08aed5 846 Gene3D G3DSA:1.10.10.160 147 221 2.2E-20 T 23-04-2016 IPR013986 DExx box DNA helicase domain RPE_RS10720 a4250100448cf3b6989f9a161d08aed5 846 PANTHER PTHR11070:SF7 35 276 2.7E-209 T 23-04-2016 RPE_RS10720 a4250100448cf3b6989f9a161d08aed5 846 PANTHER PTHR11070:SF7 319 719 2.7E-209 T 23-04-2016 RPE_RS10720 a4250100448cf3b6989f9a161d08aed5 846 Gene3D G3DSA:1.10.486.10 468 612 9.1E-47 T 23-04-2016 RPE_RS10720 a4250100448cf3b6989f9a161d08aed5 846 Pfam PF00580 UvrD/REP helicase N-terminal domain 320 352 2.6E-9 T 23-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 RPE_RS10720 a4250100448cf3b6989f9a161d08aed5 846 Pfam PF00580 UvrD/REP helicase N-terminal domain 42 288 5.8E-57 T 23-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 RPE_RS10720 a4250100448cf3b6989f9a161d08aed5 846 Gene3D G3DSA:3.40.50.300 35 143 3.1E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10720 a4250100448cf3b6989f9a161d08aed5 846 Gene3D G3DSA:3.40.50.300 223 274 3.1E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10720 a4250100448cf3b6989f9a161d08aed5 846 Gene3D G3DSA:3.40.50.300 320 365 3.1E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS07845 0200480f55f4b9c120eb561e6b41dd05 329 PANTHER PTHR41542:SF1 6 329 9.9E-63 T 23-04-2016 RPE_RS07845 0200480f55f4b9c120eb561e6b41dd05 329 PANTHER PTHR41542 6 329 9.9E-63 T 23-04-2016 RPE_RS07845 0200480f55f4b9c120eb561e6b41dd05 329 SUPERFAMILY SSF54427 211 328 2.1E-19 T 23-04-2016 IPR032710 NTF2-like domain RPE_RS07845 0200480f55f4b9c120eb561e6b41dd05 329 SMART SM00978 185 328 2.4E-34 T 23-04-2016 IPR007379 Tim44-like domain RPE_RS07845 0200480f55f4b9c120eb561e6b41dd05 329 Pfam PF04280 Tim44-like domain 207 328 5.0E-28 T 23-04-2016 IPR007379 Tim44-like domain RPE_RS03605 ddb3e428e650f53fc86b199f261fcad5 364 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 79 98 - T 23-04-2016 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 RPE_RS03605 ddb3e428e650f53fc86b199f261fcad5 364 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 12 353 5.5E-117 T 23-04-2016 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RPE_RS03605 ddb3e428e650f53fc86b199f261fcad5 364 Pfam PF01180 Dihydroorotate dehydrogenase 44 338 1.3E-90 T 23-04-2016 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 RPE_RS03605 ddb3e428e650f53fc86b199f261fcad5 364 SUPERFAMILY SSF51395 11 353 4.97E-101 T 23-04-2016 RPE_RS03605 ddb3e428e650f53fc86b199f261fcad5 364 Gene3D G3DSA:3.20.20.70 6 354 5.3E-129 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS03605 ddb3e428e650f53fc86b199f261fcad5 364 PANTHER PTHR11938:SF47 1 363 1.2E-217 T 23-04-2016 RPE_RS03605 ddb3e428e650f53fc86b199f261fcad5 364 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 5 334 41.414 T 23-04-2016 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|UniPathway: UPA00070 RPE_RS03605 ddb3e428e650f53fc86b199f261fcad5 364 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 290 310 - T 23-04-2016 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 RPE_RS03605 ddb3e428e650f53fc86b199f261fcad5 364 PANTHER PTHR11938 1 363 1.2E-217 T 23-04-2016 RPE_RS06675 377a827c6ddff8992d6695d5afe34c8a 288 Pfam PF00348 Polyprenyl synthetase 26 236 1.3E-43 T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RPE_RS06675 377a827c6ddff8992d6695d5afe34c8a 288 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 77 93 - T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RPE_RS06675 377a827c6ddff8992d6695d5afe34c8a 288 PANTHER PTHR12001 1 252 1.8E-67 T 23-04-2016 IPR017446 Polyprenyl synthetase-related RPE_RS06675 377a827c6ddff8992d6695d5afe34c8a 288 SUPERFAMILY SSF48576 10 272 9.11E-66 T 23-04-2016 IPR008949 Isoprenoid synthase domain RPE_RS06675 377a827c6ddff8992d6695d5afe34c8a 288 Gene3D G3DSA:1.10.600.10 3 259 1.1E-66 T 23-04-2016 IPR008949 Isoprenoid synthase domain RPE_RS06675 377a827c6ddff8992d6695d5afe34c8a 288 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 199 211 - T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RPE_RS06675 377a827c6ddff8992d6695d5afe34c8a 288 PANTHER PTHR12001:SF23 1 252 1.8E-67 T 23-04-2016 RPE_RS09650 fb75647c328333db2dcb907b81f84b17 210 Pfam PF09343 Conserved hypothetical protein 2217 (DUF2460) 6 209 2.5E-77 T 23-04-2016 IPR011740 Protein of unknown function DUF2460 RPE_RS09650 fb75647c328333db2dcb907b81f84b17 210 TIGRFAM TIGR02217 chp_TIGR02217: TIGR02217 family protein 4 209 3.1E-90 T 23-04-2016 IPR011740 Protein of unknown function DUF2460 RPE_RS19350 cdddc6a94048a29d40daae0cd76370a5 141 Pfam PF03334 Na+/H+ antiporter subunit 12 92 1.6E-26 T 23-04-2016 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 RPE_RS19350 cdddc6a94048a29d40daae0cd76370a5 141 PANTHER PTHR34703:SF1 2 133 8.1E-34 T 23-04-2016 RPE_RS19350 cdddc6a94048a29d40daae0cd76370a5 141 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 12 103 2.4E-26 T 23-04-2016 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 RPE_RS19350 cdddc6a94048a29d40daae0cd76370a5 141 PANTHER PTHR34703 2 133 8.1E-34 T 23-04-2016 RPE_RS13740 e55184cc418d2df8af9dd04b970a8500 470 PANTHER PTHR30203:SF10 6 470 2.4E-218 T 23-04-2016 RPE_RS13740 e55184cc418d2df8af9dd04b970a8500 470 Gene3D G3DSA:2.20.200.10 308 343 5.7E-12 T 23-04-2016 RPE_RS13740 e55184cc418d2df8af9dd04b970a8500 470 Gene3D G3DSA:2.20.200.10 103 135 5.7E-12 T 23-04-2016 RPE_RS13740 e55184cc418d2df8af9dd04b970a8500 470 SUPERFAMILY SSF56954 6 461 1.44E-104 T 23-04-2016 RPE_RS13740 e55184cc418d2df8af9dd04b970a8500 470 PANTHER PTHR30203 6 470 2.4E-218 T 23-04-2016 RPE_RS13740 e55184cc418d2df8af9dd04b970a8500 470 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 16 458 8.0E-104 T 23-04-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 RPE_RS13740 e55184cc418d2df8af9dd04b970a8500 470 Gene3D G3DSA:1.20.1600.10 345 459 2.7E-92 T 23-04-2016 RPE_RS13740 e55184cc418d2df8af9dd04b970a8500 470 Gene3D G3DSA:1.20.1600.10 136 307 2.7E-92 T 23-04-2016 RPE_RS13740 e55184cc418d2df8af9dd04b970a8500 470 Gene3D G3DSA:1.20.1600.10 53 92 2.7E-92 T 23-04-2016 RPE_RS13740 e55184cc418d2df8af9dd04b970a8500 470 Pfam PF02321 Outer membrane efflux protein 275 456 4.5E-26 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RPE_RS13740 e55184cc418d2df8af9dd04b970a8500 470 Pfam PF02321 Outer membrane efflux protein 66 246 3.8E-25 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RPE_RS00520 4a9c4651e8cc09b8ec3000ec69b3c35d 327 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 154 181 - T 23-04-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 RPE_RS00520 4a9c4651e8cc09b8ec3000ec69b3c35d 327 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 50 319 3.9E-22 T 23-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 RPE_RS00520 4a9c4651e8cc09b8ec3000ec69b3c35d 327 PANTHER PTHR10996:SF152 1 319 7.2E-129 T 23-04-2016 RPE_RS00520 4a9c4651e8cc09b8ec3000ec69b3c35d 327 SUPERFAMILY SSF52283 9 141 4.16E-28 T 23-04-2016 RPE_RS00520 4a9c4651e8cc09b8ec3000ec69b3c35d 327 PANTHER PTHR10996 1 319 7.2E-129 T 23-04-2016 RPE_RS00520 4a9c4651e8cc09b8ec3000ec69b3c35d 327 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 115 288 8.0E-46 T 23-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RPE_RS00520 4a9c4651e8cc09b8ec3000ec69b3c35d 327 SUPERFAMILY SSF51735 107 289 2.28E-49 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS00520 4a9c4651e8cc09b8ec3000ec69b3c35d 327 Gene3D G3DSA:3.40.50.720 121 290 1.9E-51 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS00520 4a9c4651e8cc09b8ec3000ec69b3c35d 327 Gene3D G3DSA:3.40.50.720 15 120 2.8E-25 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS20710 545ddc13ebe133d7b6a2298f7d4edf62 374 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 8 178 6.2E-70 T 23-04-2016 IPR005126 NapC/NirT cytochrome c, N-terminal RPE_RS20710 545ddc13ebe133d7b6a2298f7d4edf62 374 PIRSF PIRSF000014 2 374 5.2E-124 T 23-04-2016 IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK GO:0005506|GO:0009055|GO:0009276|GO:0016021|GO:0020037 RPE_RS20710 545ddc13ebe133d7b6a2298f7d4edf62 374 PANTHER PTHR30333 1 373 9.2E-97 T 23-04-2016 RPE_RS20710 545ddc13ebe133d7b6a2298f7d4edf62 374 SUPERFAMILY SSF48695 9 179 1.51E-51 T 23-04-2016 IPR011031 Multihaem cytochrome RPE_RS20710 545ddc13ebe133d7b6a2298f7d4edf62 374 Gene3D G3DSA:1.10.3820.10 325 330 1.3E-27 T 23-04-2016 RPE_RS20710 545ddc13ebe133d7b6a2298f7d4edf62 374 Gene3D G3DSA:1.10.3820.10 7 180 1.3E-27 T 23-04-2016 RPE_RS03250 3d736571002319a86f2b3327210a0554 99 PANTHER PTHR34477:SF2 1 98 4.1E-56 T 23-04-2016 RPE_RS03250 3d736571002319a86f2b3327210a0554 99 SUPERFAMILY SSF82771 6 91 3.27E-19 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily RPE_RS03250 3d736571002319a86f2b3327210a0554 99 Gene3D G3DSA:3.40.1440.10 7 85 1.2E-4 T 23-04-2016 IPR027299 GIY-YIG domain RPE_RS03250 3d736571002319a86f2b3327210a0554 99 Pfam PF01541 GIY-YIG catalytic domain 6 77 7.9E-15 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily RPE_RS03250 3d736571002319a86f2b3327210a0554 99 SMART SM00465 5 83 3.6E-8 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily RPE_RS03250 3d736571002319a86f2b3327210a0554 99 PANTHER PTHR34477 1 98 4.1E-56 T 23-04-2016 RPE_RS09345 5c249321c3db55d25aae22d336aa629d 126 PANTHER PTHR20941 3 121 1.8E-27 T 23-04-2016 RPE_RS09345 5c249321c3db55d25aae22d336aa629d 126 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 3 118 1.3E-33 T 23-04-2016 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RPE_RS09345 5c249321c3db55d25aae22d336aa629d 126 Pfam PF02152 Dihydroneopterin aldolase 5 116 1.2E-30 T 23-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RPE_RS09345 5c249321c3db55d25aae22d336aa629d 126 Gene3D G3DSA:3.30.1130.10 1 120 3.6E-38 T 23-04-2016 RPE_RS09345 5c249321c3db55d25aae22d336aa629d 126 SMART SM00905 5 118 2.5E-42 T 23-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RPE_RS09345 5c249321c3db55d25aae22d336aa629d 126 SUPERFAMILY SSF55620 1 120 4.31E-34 T 23-04-2016 RPE_RS09345 5c249321c3db55d25aae22d336aa629d 126 TIGRFAM TIGR00526 folB_dom: FolB domain 3 120 3.5E-26 T 23-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RPE_RS22280 59e49a009c9cba6dbe8b0f42ec51075d 315 SUPERFAMILY SSF53850 24 314 8.57E-71 T 23-04-2016 RPE_RS22280 59e49a009c9cba6dbe8b0f42ec51075d 315 Gene3D G3DSA:3.40.190.10 24 105 1.0E-53 T 23-04-2016 RPE_RS22280 59e49a009c9cba6dbe8b0f42ec51075d 315 Gene3D G3DSA:3.40.190.10 245 314 1.0E-53 T 23-04-2016 RPE_RS22280 59e49a009c9cba6dbe8b0f42ec51075d 315 Gene3D G3DSA:3.40.190.10 114 244 5.9E-34 T 23-04-2016 RPE_RS22280 59e49a009c9cba6dbe8b0f42ec51075d 315 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 6 312 1.4E-114 T 23-04-2016 IPR011852 TRAP transporter solute receptor, TAXI family RPE_RS22280 59e49a009c9cba6dbe8b0f42ec51075d 315 Pfam PF16868 NMT1-like family 30 312 1.3E-95 T 23-04-2016 IPR011852 TRAP transporter solute receptor, TAXI family RPE_RS22280 59e49a009c9cba6dbe8b0f42ec51075d 315 PANTHER PTHR30024 1 315 6.9E-111 T 23-04-2016 RPE_RS22280 59e49a009c9cba6dbe8b0f42ec51075d 315 PANTHER PTHR30024:SF5 1 315 6.9E-111 T 23-04-2016 RPE_RS17000 1b66561c1a1f67340134ca8fab81bcac 251 Gene3D G3DSA:3.20.20.190 12 235 4.6E-38 T 23-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 RPE_RS17000 1b66561c1a1f67340134ca8fab81bcac 251 PANTHER PTHR23344 1 247 3.0E-42 T 23-04-2016 IPR004129 Glycerophosphoryl diester phosphodiesterase GO:0008889 RPE_RS17000 1b66561c1a1f67340134ca8fab81bcac 251 PANTHER PTHR23344:SF20 1 247 3.0E-42 T 23-04-2016 RPE_RS17000 1b66561c1a1f67340134ca8fab81bcac 251 SUPERFAMILY SSF51695 12 241 6.02E-42 T 23-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 RPE_RS17000 1b66561c1a1f67340134ca8fab81bcac 251 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 14 155 4.0E-12 T 23-04-2016 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 RPE_RS22650 12f19b3347a5c08a7afa33dfd60723b4 67 Gene3D G3DSA:2.40.50.240 1 67 9.3E-36 T 23-04-2016 IPR024044 NifT/FixU barrel-like domain RPE_RS22650 12f19b3347a5c08a7afa33dfd60723b4 67 TIGRFAM TIGR02934 nifT_nitrog: probable nitrogen fixation protein FixT 1 67 1.5E-33 T 23-04-2016 IPR009727 NifT/FixU GO:0009399 RPE_RS22650 12f19b3347a5c08a7afa33dfd60723b4 67 Pfam PF06988 NifT/FixU protein 1 64 1.6E-31 T 23-04-2016 IPR009727 NifT/FixU GO:0009399 RPE_RS22650 12f19b3347a5c08a7afa33dfd60723b4 67 SUPERFAMILY SSF159203 1 67 7.85E-26 T 23-04-2016 IPR024044 NifT/FixU barrel-like domain RPE_RS21395 0957a80c648cab702ea9a53e1f62036d 121 SMART SM00448 2 115 4.2E-34 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS21395 0957a80c648cab702ea9a53e1f62036d 121 PANTHER PTHR26402 2 111 1.2E-37 T 23-04-2016 RPE_RS21395 0957a80c648cab702ea9a53e1f62036d 121 SUPERFAMILY SSF52172 1 116 4.84E-36 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS21395 0957a80c648cab702ea9a53e1f62036d 121 Pfam PF00072 Response regulator receiver domain 5 113 4.7E-28 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS21395 0957a80c648cab702ea9a53e1f62036d 121 Gene3D G3DSA:3.40.50.2300 2 118 6.6E-36 T 23-04-2016 RPE_RS00530 4dbccd50fa4a146ad60461eebff34f08 271 SMART SM00382 44 226 9.7E-16 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS00530 4dbccd50fa4a146ad60461eebff34f08 271 PANTHER PTHR24220:SF589 20 249 4.9E-86 T 23-04-2016 RPE_RS00530 4dbccd50fa4a146ad60461eebff34f08 271 Gene3D G3DSA:3.40.50.300 19 233 1.6E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS00530 4dbccd50fa4a146ad60461eebff34f08 271 PANTHER PTHR24220 20 249 4.9E-86 T 23-04-2016 RPE_RS00530 4dbccd50fa4a146ad60461eebff34f08 271 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS00530 4dbccd50fa4a146ad60461eebff34f08 271 Pfam PF00005 ABC transporter 37 176 3.3E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS00530 4dbccd50fa4a146ad60461eebff34f08 271 SUPERFAMILY SSF52540 19 240 4.03E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS21190 9a1fa8461885f8759e1d2bbe6ca7e2fc 377 Pfam PF13692 Glycosyl transferases group 1 211 348 3.1E-18 T 23-04-2016 RPE_RS21190 9a1fa8461885f8759e1d2bbe6ca7e2fc 377 SUPERFAMILY SSF53756 24 370 2.17E-49 T 23-04-2016 RPE_RS21190 9a1fa8461885f8759e1d2bbe6ca7e2fc 377 Gene3D G3DSA:3.40.50.2000 208 358 3.9E-13 T 23-04-2016 RPE_RS21190 9a1fa8461885f8759e1d2bbe6ca7e2fc 377 Pfam PF13579 Glycosyl transferase 4-like domain 28 189 1.1E-12 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RPE_RS21190 9a1fa8461885f8759e1d2bbe6ca7e2fc 377 PANTHER PTHR12526 104 366 4.5E-23 T 23-04-2016 RPE_RS21190 9a1fa8461885f8759e1d2bbe6ca7e2fc 377 PANTHER PTHR12526 23 85 4.5E-23 T 23-04-2016 RPE_RS19745 8a07896f9f3b36add82846abb69e05a2 159 PANTHER PTHR23022 4 128 1.8E-15 T 23-04-2016 RPE_RS19745 8a07896f9f3b36add82846abb69e05a2 159 Pfam PF13358 DDE superfamily endonuclease 5 122 1.9E-34 T 23-04-2016 RPE_RS18505 8a07896f9f3b36add82846abb69e05a2 159 PANTHER PTHR23022 4 128 1.8E-15 T 23-04-2016 RPE_RS18505 8a07896f9f3b36add82846abb69e05a2 159 Pfam PF13358 DDE superfamily endonuclease 5 122 1.9E-34 T 23-04-2016 RPE_RS06220 1de1bfd86ac0919c0e1c1067ce9f949f 333 PANTHER PTHR30013 5 333 2.6E-159 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RPE_RS06220 1de1bfd86ac0919c0e1c1067ce9f949f 333 PANTHER PTHR30013:SF5 5 333 2.6E-159 T 23-04-2016 RPE_RS06220 1de1bfd86ac0919c0e1c1067ce9f949f 333 Gene3D G3DSA:3.40.50.700 2 198 3.9E-45 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 RPE_RS06220 1de1bfd86ac0919c0e1c1067ce9f949f 333 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 201 274 1.2E-19 T 23-04-2016 IPR027394 Cytochrome-c3 hydrogenase, C-terminal RPE_RS06220 1de1bfd86ac0919c0e1c1067ce9f949f 333 Gene3D G3DSA:4.10.480.10 200 277 5.6E-22 T 23-04-2016 IPR027394 Cytochrome-c3 hydrogenase, C-terminal RPE_RS06220 1de1bfd86ac0919c0e1c1067ce9f949f 333 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 14 179 3.7E-30 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 RPE_RS06220 1de1bfd86ac0919c0e1c1067ce9f949f 333 PIRSF PIRSF000310 1 324 6.4E-84 T 23-04-2016 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 RPE_RS06220 1de1bfd86ac0919c0e1c1067ce9f949f 333 SUPERFAMILY SSF56770 4 276 4.97E-75 T 23-04-2016 RPE_RS17785 0a371a083f0a3f2234643924512050b7 225 PANTHER PTHR23026 1 225 1.7E-61 T 23-04-2016 RPE_RS17785 0a371a083f0a3f2234643924512050b7 225 Gene3D G3DSA:3.40.109.10 121 220 1.3E-43 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 RPE_RS17785 0a371a083f0a3f2234643924512050b7 225 Gene3D G3DSA:3.40.109.10 1 89 1.3E-43 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 RPE_RS17785 0a371a083f0a3f2234643924512050b7 225 PANTHER PTHR23026:SF100 1 225 1.7E-61 T 23-04-2016 RPE_RS17785 0a371a083f0a3f2234643924512050b7 225 Pfam PF00881 Nitroreductase family 8 197 2.0E-32 T 23-04-2016 IPR029479 Nitroreductase RPE_RS17785 0a371a083f0a3f2234643924512050b7 225 SUPERFAMILY SSF55469 121 217 9.95E-41 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 RPE_RS17785 0a371a083f0a3f2234643924512050b7 225 SUPERFAMILY SSF55469 1 84 9.95E-41 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 RPE_RS19680 3b6601e0a544e73ad00858abd4e3b4b8 253 Pfam PF02830 V4R domain 154 210 3.4E-9 T 23-04-2016 IPR004096 4-vinyl reductase, 4VR RPE_RS19680 3b6601e0a544e73ad00858abd4e3b4b8 253 TIGRFAM TIGR02019 BchJ: bacteriochlorophyll 4-vinyl reductase 23 210 7.3E-57 T 23-04-2016 IPR010249 Bacteriochlorophyll 4-vinyl reductase GO:0015979|GO:0030494 UniPathway: UPA00671 RPE_RS19680 3b6601e0a544e73ad00858abd4e3b4b8 253 Gene3D G3DSA:3.30.1380.20 64 214 4.9E-12 T 23-04-2016 RPE_RS19680 3b6601e0a544e73ad00858abd4e3b4b8 253 SUPERFAMILY SSF111126 90 212 1.46E-15 T 23-04-2016 IPR024096 NO signalling/Golgi transport ligand-binding domain RPE_RS19680 3b6601e0a544e73ad00858abd4e3b4b8 253 SMART SM00989 151 212 1.1E-11 T 23-04-2016 IPR004096 4-vinyl reductase, 4VR RPE_RS22150 d21acc1b713d3401c7da92efb2224162 158 Pfam PF05258 Protein of unknown function (DUF721) 11 107 2.2E-19 T 23-04-2016 IPR007922 Protein of unknown function DUF721/UPF0232 RPE_RS22150 d21acc1b713d3401c7da92efb2224162 158 PIRSF PIRSF032064 1 158 2.7E-54 T 23-04-2016 IPR010593 Protein of unknown function DUF1159 RPE_RS15820 98522f41b02fd681669ea00f4e08ae56 323 Gene3D G3DSA:3.40.50.1980 49 166 4.0E-20 T 23-04-2016 RPE_RS15820 98522f41b02fd681669ea00f4e08ae56 323 PANTHER PTHR30535 12 306 7.7E-102 T 23-04-2016 RPE_RS15820 98522f41b02fd681669ea00f4e08ae56 323 Gene3D G3DSA:3.40.50.1980 174 304 2.2E-19 T 23-04-2016 RPE_RS15820 98522f41b02fd681669ea00f4e08ae56 323 SUPERFAMILY SSF53807 31 303 2.67E-48 T 23-04-2016 RPE_RS15820 98522f41b02fd681669ea00f4e08ae56 323 Pfam PF01497 Periplasmic binding protein 52 278 2.4E-24 T 23-04-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 RPE_RS15820 98522f41b02fd681669ea00f4e08ae56 323 PANTHER PTHR30535:SF4 12 306 7.7E-102 T 23-04-2016 RPE_RS16160 ccc6f46baa65854485cb457fc51b0408 671 Gene3D G3DSA:3.40.50.720 18 205 9.1E-38 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS16160 ccc6f46baa65854485cb457fc51b0408 671 SUPERFAMILY SSF51735 19 202 5.26E-39 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS16160 ccc6f46baa65854485cb457fc51b0408 671 Gene3D G3DSA:1.10.1040.10 302 370 3.2E-5 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RPE_RS16160 ccc6f46baa65854485cb457fc51b0408 671 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 21 200 1.5E-42 T 23-04-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 RPE_RS16160 ccc6f46baa65854485cb457fc51b0408 671 Pfam PF00378 Enoyl-CoA hydratase/isomerase 389 589 2.4E-39 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RPE_RS16160 ccc6f46baa65854485cb457fc51b0408 671 Gene3D G3DSA:1.10.12.10 623 667 5.8E-6 T 23-04-2016 IPR014748 Crontonase, C-terminal RPE_RS16160 ccc6f46baa65854485cb457fc51b0408 671 SUPERFAMILY SSF52096 380 585 3.32E-55 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS16160 ccc6f46baa65854485cb457fc51b0408 671 SUPERFAMILY SSF52096 614 669 3.32E-55 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS16160 ccc6f46baa65854485cb457fc51b0408 671 PANTHER PTHR11941 369 566 6.1E-50 T 23-04-2016 RPE_RS16160 ccc6f46baa65854485cb457fc51b0408 671 PANTHER PTHR11941 602 667 6.1E-50 T 23-04-2016 RPE_RS16160 ccc6f46baa65854485cb457fc51b0408 671 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 480 500 - T 23-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 RPE_RS16160 ccc6f46baa65854485cb457fc51b0408 671 Gene3D G3DSA:3.90.226.10 381 609 2.3E-52 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS16160 ccc6f46baa65854485cb457fc51b0408 671 PANTHER PTHR11941:SF54 369 566 6.1E-50 T 23-04-2016 RPE_RS16160 ccc6f46baa65854485cb457fc51b0408 671 PANTHER PTHR11941:SF54 602 667 6.1E-50 T 23-04-2016 RPE_RS24615 a174723eabee78f7739897ec3c2c339f 123 Pfam PF08843 Nucleotidyl transferase AbiEii toxin, Type IV TA system 3 122 8.8E-7 T 23-04-2016 IPR014942 Nucleotidyl transferase AbiEii toxin, Type IV TA system RPE_RS24805 6f870459364c985fbd1df71d41c6b3b9 936 Gene3D G3DSA:2.40.10.10 791 910 4.2E-5 T 23-04-2016 RPE_RS24805 6f870459364c985fbd1df71d41c6b3b9 936 PANTHER PTHR10795 149 382 6.3E-34 T 23-04-2016 IPR015500 Peptidase S8, subtilisin-related RPE_RS24805 6f870459364c985fbd1df71d41c6b3b9 936 Pfam PF13365 Trypsin-like peptidase domain 699 890 2.2E-13 T 23-04-2016 RPE_RS24805 6f870459364c985fbd1df71d41c6b3b9 936 Gene3D G3DSA:3.40.50.200 135 442 5.4E-57 T 23-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RPE_RS24805 6f870459364c985fbd1df71d41c6b3b9 936 Gene3D G3DSA:2.40.10.10 694 790 2.6E-11 T 23-04-2016 RPE_RS24805 6f870459364c985fbd1df71d41c6b3b9 936 PRINTS PR00723 Subtilisin serine protease family (S8) signature 367 383 2.3E-6 T 23-04-2016 IPR015500 Peptidase S8, subtilisin-related RPE_RS24805 6f870459364c985fbd1df71d41c6b3b9 936 PRINTS PR00723 Subtilisin serine protease family (S8) signature 207 220 2.3E-6 T 23-04-2016 IPR015500 Peptidase S8, subtilisin-related RPE_RS24805 6f870459364c985fbd1df71d41c6b3b9 936 PRINTS PR00723 Subtilisin serine protease family (S8) signature 160 179 2.3E-6 T 23-04-2016 IPR015500 Peptidase S8, subtilisin-related RPE_RS24805 6f870459364c985fbd1df71d41c6b3b9 936 SUPERFAMILY SSF50494 848 908 1.31E-19 T 23-04-2016 IPR009003 Peptidase S1, PA clan RPE_RS24805 6f870459364c985fbd1df71d41c6b3b9 936 SUPERFAMILY SSF50494 682 817 1.31E-19 T 23-04-2016 IPR009003 Peptidase S1, PA clan RPE_RS24805 6f870459364c985fbd1df71d41c6b3b9 936 PANTHER PTHR10795:SF419 149 382 6.3E-34 T 23-04-2016 RPE_RS24805 6f870459364c985fbd1df71d41c6b3b9 936 Pfam PF00082 Subtilase family 160 431 8.7E-26 T 23-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RPE_RS24805 6f870459364c985fbd1df71d41c6b3b9 936 SUPERFAMILY SSF52743 144 442 4.58E-53 T 23-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RPE_RS17435 811b21ea795e360490ad28a41be37936 365 PANTHER PTHR30158:SF8 10 361 1.3E-74 T 23-04-2016 RPE_RS17435 811b21ea795e360490ad28a41be37936 365 Gene3D G3DSA:2.40.50.100 70 98 7.3E-15 T 23-04-2016 RPE_RS17435 811b21ea795e360490ad28a41be37936 365 Gene3D G3DSA:2.40.50.100 173 203 7.3E-15 T 23-04-2016 RPE_RS17435 811b21ea795e360490ad28a41be37936 365 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 68 278 6.0E-18 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RPE_RS17435 811b21ea795e360490ad28a41be37936 365 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 40 359 1.2E-64 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RPE_RS17435 811b21ea795e360490ad28a41be37936 365 SUPERFAMILY SSF111369 55 282 2.88E-18 T 23-04-2016 RPE_RS17435 811b21ea795e360490ad28a41be37936 365 PANTHER PTHR30158 10 361 1.3E-74 T 23-04-2016 RPE_RS11590 754c3922e9d68be8c0cec84743abccd2 81 Pfam PF10276 Zinc-finger domain 22 58 3.2E-12 T 23-04-2016 IPR019401 Zinc finger, CHCC-type RPE_RS11590 754c3922e9d68be8c0cec84743abccd2 81 Gene3D G3DSA:2.60.260.40 1 80 1.6E-30 T 23-04-2016 IPR019401 Zinc finger, CHCC-type RPE_RS07540 a79e8c7a8a513504ec70a968bce039fc 459 Gene3D G3DSA:3.50.50.60 344 396 3.2E-44 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS07540 a79e8c7a8a513504ec70a968bce039fc 459 Gene3D G3DSA:3.50.50.60 173 253 3.2E-44 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS07540 a79e8c7a8a513504ec70a968bce039fc 459 Gene3D G3DSA:3.50.50.60 20 111 3.2E-44 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS07540 a79e8c7a8a513504ec70a968bce039fc 459 PANTHER PTHR13847 21 399 7.4E-84 T 23-04-2016 RPE_RS07540 a79e8c7a8a513504ec70a968bce039fc 459 Pfam PF01266 FAD dependent oxidoreductase 33 380 4.3E-42 T 23-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RPE_RS07540 a79e8c7a8a513504ec70a968bce039fc 459 PANTHER PTHR13847:SF196 21 399 7.4E-84 T 23-04-2016 RPE_RS07540 a79e8c7a8a513504ec70a968bce039fc 459 SUPERFAMILY SSF51905 32 254 2.59E-34 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS07540 a79e8c7a8a513504ec70a968bce039fc 459 SUPERFAMILY SSF51905 344 401 2.59E-34 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS18030 ddb5244475ce6c6f683058a209ca30d4 172 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 1 158 24.275 T 23-04-2016 IPR022973 Ribosomal protein L10 RPE_RS18030 ddb5244475ce6c6f683058a209ca30d4 172 SUPERFAMILY SSF160369 3 168 3.79E-52 T 23-04-2016 RPE_RS18030 ddb5244475ce6c6f683058a209ca30d4 172 PANTHER PTHR11560 1 170 2.1E-50 T 23-04-2016 RPE_RS18030 ddb5244475ce6c6f683058a209ca30d4 172 ProSitePatterns PS01109 Ribosomal protein L10 signature. 6 40 - T 23-04-2016 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS18030 ddb5244475ce6c6f683058a209ca30d4 172 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 16 140 1.0E-9 T 23-04-2016 RPE_RS18030 ddb5244475ce6c6f683058a209ca30d4 172 Pfam PF00466 Ribosomal protein L10 3 98 4.2E-23 T 23-04-2016 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 RPE_RS21425 a0a3f93fdbaa2c318b8ec9ddc52d8840 199 PIRSF PIRSF033924 1 199 5.7E-93 T 23-04-2016 IPR008325 Uncharacterised conserved protein UCP033924 RPE_RS21425 a0a3f93fdbaa2c318b8ec9ddc52d8840 199 Pfam PF06577 Protein of unknown function (DUF1134) 41 199 3.0E-74 T 23-04-2016 IPR008325 Uncharacterised conserved protein UCP033924 RPE_RS13315 65458e1aef347bb9d5f7a3f91bc8da4a 173 SUPERFAMILY SSF88946 7 96 7.85E-10 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS13315 65458e1aef347bb9d5f7a3f91bc8da4a 173 SUPERFAMILY SSF88659 95 169 1.01E-14 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS13315 65458e1aef347bb9d5f7a3f91bc8da4a 173 Gene3D G3DSA:1.10.10.10 105 166 1.1E-11 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS13315 65458e1aef347bb9d5f7a3f91bc8da4a 173 PANTHER PTHR30173 11 165 2.0E-28 T 23-04-2016 RPE_RS13315 65458e1aef347bb9d5f7a3f91bc8da4a 173 PANTHER PTHR30173:SF30 11 165 2.0E-28 T 23-04-2016 RPE_RS13315 65458e1aef347bb9d5f7a3f91bc8da4a 173 Pfam PF08281 Sigma-70, region 4 112 164 1.0E-13 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS13315 65458e1aef347bb9d5f7a3f91bc8da4a 173 Gene3D G3DSA:1.10.1740.10 11 104 7.7E-8 T 23-04-2016 RPE_RS13315 65458e1aef347bb9d5f7a3f91bc8da4a 173 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 11 165 8.3E-22 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS13315 65458e1aef347bb9d5f7a3f91bc8da4a 173 Pfam PF04542 Sigma-70 region 2 23 82 1.7E-5 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS21770 5a52a8d6f26d995a567bf63c44f1665b 281 Pfam PF07386 Protein of unknown function (DUF1499) 114 253 7.3E-26 T 23-04-2016 IPR010865 Protein of unknown function DUF1499 RPE_RS11350 19389b767439f76628eb108ddc2e5b56 92 Hamap MF_02117 N(2)-fixation sustaining protein CowN [cowN]. 2 92 21.58 T 23-04-2016 IPR024899 Nitrogen fixation-sustaining protein CowN GO:0009399 RPE_RS19780 b3814f41c05ca6a35a894c8cebd12fce 167 PANTHER PTHR35519 55 166 9.0E-38 T 23-04-2016 RPE_RS19780 b3814f41c05ca6a35a894c8cebd12fce 167 PANTHER PTHR35519:SF2 55 166 9.0E-38 T 23-04-2016 RPE_RS19780 b3814f41c05ca6a35a894c8cebd12fce 167 Pfam PF13430 Domain of unknown function (DUF4112) 61 163 4.9E-34 T 23-04-2016 IPR025187 Protein of unknown function DUF4112 RPE_RS21790 d4be83823eee390afa258c7f2958bc29 119 PANTHER PTHR33930 1 119 3.1E-35 T 23-04-2016 RPE_RS21790 d4be83823eee390afa258c7f2958bc29 119 SUPERFAMILY SSF69118 16 107 6.54E-29 T 23-04-2016 IPR029032 AhpD-like RPE_RS21790 d4be83823eee390afa258c7f2958bc29 119 Pfam PF02627 Carboxymuconolactone decarboxylase family 24 106 8.3E-22 T 23-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RPE_RS21790 d4be83823eee390afa258c7f2958bc29 119 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 41 89 3.0E-16 T 23-04-2016 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RPE_RS21790 d4be83823eee390afa258c7f2958bc29 119 PANTHER PTHR33930:SF2 1 119 3.1E-35 T 23-04-2016 RPE_RS21790 d4be83823eee390afa258c7f2958bc29 119 Gene3D G3DSA:1.20.1290.10 5 114 5.5E-36 T 23-04-2016 IPR029032 AhpD-like RPE_RS10160 be60473c4327708118079b04b5aad78c 192 TIGRFAM TIGR01926 peroxid_rel: uncharacterized peroxidase-related enzyme 7 183 2.0E-68 T 23-04-2016 IPR010195 Uncharacterised peroxidase-related RPE_RS10160 be60473c4327708118079b04b5aad78c 192 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 64 112 3.5E-14 T 23-04-2016 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RPE_RS10160 be60473c4327708118079b04b5aad78c 192 PANTHER PTHR35446 2 192 8.2E-95 T 23-04-2016 RPE_RS10160 be60473c4327708118079b04b5aad78c 192 SUPERFAMILY SSF69118 6 191 1.57E-59 T 23-04-2016 IPR029032 AhpD-like RPE_RS10160 be60473c4327708118079b04b5aad78c 192 Gene3D G3DSA:1.20.5.810 14 65 2.2E-31 T 23-04-2016 RPE_RS10160 be60473c4327708118079b04b5aad78c 192 Pfam PF02627 Carboxymuconolactone decarboxylase family 46 131 1.3E-17 T 23-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RPE_RS10160 be60473c4327708118079b04b5aad78c 192 Gene3D G3DSA:1.20.1290.10 66 187 3.5E-36 T 23-04-2016 IPR029032 AhpD-like RPE_RS10160 be60473c4327708118079b04b5aad78c 192 PANTHER PTHR35446:SF2 2 192 8.2E-95 T 23-04-2016 RPE_RS03165 0f75d6dac3ea82ec9124258642ad09da 379 SMART SM00448 6 120 1.4E-11 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS03165 0f75d6dac3ea82ec9124258642ad09da 379 Gene3D G3DSA:3.30.565.10 278 375 8.1E-11 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS03165 0f75d6dac3ea82ec9124258642ad09da 379 Pfam PF07730 Histidine kinase 176 241 9.2E-11 T 23-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RPE_RS03165 0f75d6dac3ea82ec9124258642ad09da 379 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 282 374 5.0E-8 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS03165 0f75d6dac3ea82ec9124258642ad09da 379 SUPERFAMILY SSF52172 7 150 1.71E-22 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS03165 0f75d6dac3ea82ec9124258642ad09da 379 PANTHER PTHR24421 4 374 1.9E-40 T 23-04-2016 RPE_RS03165 0f75d6dac3ea82ec9124258642ad09da 379 SMART SM00387 280 376 9.3E-7 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS03165 0f75d6dac3ea82ec9124258642ad09da 379 SUPERFAMILY SSF55874 243 374 9.43E-17 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS03165 0f75d6dac3ea82ec9124258642ad09da 379 Gene3D G3DSA:3.40.50.2300 6 135 1.1E-20 T 23-04-2016 RPE_RS03165 0f75d6dac3ea82ec9124258642ad09da 379 Pfam PF00072 Response regulator receiver domain 8 110 1.2E-13 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS23530 2f1c9b19f6b3be4c0231fea824280db2 150 Pfam PF02472 Biopolymer transport protein ExbD/TolR 24 146 3.1E-29 T 23-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 RPE_RS23530 2f1c9b19f6b3be4c0231fea824280db2 150 PANTHER PTHR30558 5 149 4.9E-37 T 23-04-2016 RPE_RS23530 2f1c9b19f6b3be4c0231fea824280db2 150 PANTHER PTHR30558:SF7 5 149 4.9E-37 T 23-04-2016 RPE_RS23530 2f1c9b19f6b3be4c0231fea824280db2 150 TIGRFAM TIGR02801 tolR: protein TolR 24 146 1.9E-41 T 23-04-2016 IPR014168 Biopolymer transport, TolR GO:0015031|GO:0016021 RPE_RS07555 22870c875cdd3d66eaee69adbacd87c8 602 SUPERFAMILY SSF117143 353 562 1.44E-30 T 23-04-2016 RPE_RS07555 22870c875cdd3d66eaee69adbacd87c8 602 Pfam PF07559 Flagellar basal body protein FlaE 371 487 1.1E-6 T 23-04-2016 IPR011491 Flagellar hook protein FlgE RPE_RS07555 22870c875cdd3d66eaee69adbacd87c8 602 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 361 583 4.0E-37 T 23-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G RPE_RS07555 22870c875cdd3d66eaee69adbacd87c8 602 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 6 325 1.6E-41 T 23-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G RPE_RS07555 22870c875cdd3d66eaee69adbacd87c8 602 PANTHER PTHR30435:SF1 484 602 2.2E-69 T 23-04-2016 RPE_RS07555 22870c875cdd3d66eaee69adbacd87c8 602 PANTHER PTHR30435:SF1 1 135 2.2E-69 T 23-04-2016 RPE_RS07555 22870c875cdd3d66eaee69adbacd87c8 602 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 529 599 2.4E-15 T 23-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RPE_RS07555 22870c875cdd3d66eaee69adbacd87c8 602 SUPERFAMILY SSF117143 83 311 7.06E-22 T 23-04-2016 RPE_RS07555 22870c875cdd3d66eaee69adbacd87c8 602 PANTHER PTHR30435 484 602 2.2E-69 T 23-04-2016 RPE_RS07555 22870c875cdd3d66eaee69adbacd87c8 602 PANTHER PTHR30435 1 135 2.2E-69 T 23-04-2016 RPE_RS08395 b47b2619dd419817ba6496523779f174 263 Pfam PF13437 HlyD family secretion protein 138 225 8.5E-16 T 23-04-2016 RPE_RS08395 b47b2619dd419817ba6496523779f174 263 PANTHER PTHR32347:SF15 16 252 1.9E-104 T 23-04-2016 RPE_RS08395 b47b2619dd419817ba6496523779f174 263 SUPERFAMILY SSF111369 39 185 1.31E-24 T 23-04-2016 RPE_RS08395 b47b2619dd419817ba6496523779f174 263 Gene3D G3DSA:2.40.50.100 42 72 7.8E-14 T 23-04-2016 RPE_RS08395 b47b2619dd419817ba6496523779f174 263 Gene3D G3DSA:2.40.50.100 133 166 7.8E-14 T 23-04-2016 RPE_RS08395 b47b2619dd419817ba6496523779f174 263 PANTHER PTHR32347 16 252 1.9E-104 T 23-04-2016 RPE_RS08395 b47b2619dd419817ba6496523779f174 263 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 31 213 4.5E-35 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RPE_RS08395 b47b2619dd419817ba6496523779f174 263 Pfam PF13533 Biotin-lipoyl like 42 87 5.6E-10 T 23-04-2016 RPE_RS01050 c83b54996d3be3917680f6d7bb288ce3 145 SUPERFAMILY SSF46785 8 135 3.68E-35 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS01050 c83b54996d3be3917680f6d7bb288ce3 145 PANTHER PTHR33202 8 134 3.8E-34 T 23-04-2016 RPE_RS01050 c83b54996d3be3917680f6d7bb288ce3 145 Gene3D G3DSA:1.10.10.10 7 85 1.1E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS01050 c83b54996d3be3917680f6d7bb288ce3 145 Pfam PF01475 Ferric uptake regulator family 16 134 7.4E-41 T 23-04-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 RPE_RS24425 cc541120028e4fd1c60474b6af66be6a 238 SUPERFAMILY SSF109755 8 227 2.51E-70 T 23-04-2016 RPE_RS24425 cc541120028e4fd1c60474b6af66be6a 238 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 8 219 2.7E-69 T 23-04-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 RPE_RS24425 cc541120028e4fd1c60474b6af66be6a 238 PANTHER PTHR10010:SF14 1 219 3.2E-73 T 23-04-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 RPE_RS24425 cc541120028e4fd1c60474b6af66be6a 238 Pfam PF01895 PhoU domain 22 109 3.5E-20 T 23-04-2016 IPR026022 PhoU domain RPE_RS24425 cc541120028e4fd1c60474b6af66be6a 238 Pfam PF01895 PhoU domain 125 209 2.9E-17 T 23-04-2016 IPR026022 PhoU domain RPE_RS24425 cc541120028e4fd1c60474b6af66be6a 238 Gene3D G3DSA:1.20.58.220 120 220 5.2E-33 T 23-04-2016 RPE_RS24425 cc541120028e4fd1c60474b6af66be6a 238 Gene3D G3DSA:1.20.58.220 5 112 9.5E-30 T 23-04-2016 RPE_RS24425 cc541120028e4fd1c60474b6af66be6a 238 PIRSF PIRSF003107 3 223 6.5E-63 T 23-04-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 RPE_RS24425 cc541120028e4fd1c60474b6af66be6a 238 PANTHER PTHR10010 1 219 3.2E-73 T 23-04-2016 RPE_RS20340 99ccbcf67becefacbf56c8a18d170829 62 TIGRFAM TIGR03980 prismane_assoc: hybrid cluster protein-associated redox disulfide domain 3 59 2.8E-22 T 23-04-2016 IPR023883 Conserved hypothetical protein CHP03980, redox-disulphide RPE_RS20340 99ccbcf67becefacbf56c8a18d170829 62 SUPERFAMILY SSF140683 2 61 2.22E-10 T 23-04-2016 RPE_RS20340 99ccbcf67becefacbf56c8a18d170829 62 PANTHER PTHR39341 2 62 2.1E-14 T 23-04-2016 RPE_RS20340 99ccbcf67becefacbf56c8a18d170829 62 Pfam PF08984 Domain of unknown function (DUF1858) 3 54 1.5E-10 T 23-04-2016 IPR015077 Domain of unknown function DUF1858 RPE_RS16110 cbffc1c7fda5b919cda6bf241a680592 288 PANTHER PTHR11908 7 286 2.5E-61 T 23-04-2016 RPE_RS16110 cbffc1c7fda5b919cda6bf241a680592 288 SMART SM01092 183 285 9.2E-25 T 23-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal RPE_RS16110 cbffc1c7fda5b919cda6bf241a680592 288 Gene3D G3DSA:3.30.465.10 57 175 4.6E-35 T 23-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RPE_RS16110 cbffc1c7fda5b919cda6bf241a680592 288 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 184 284 2.7E-21 T 23-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal RPE_RS16110 cbffc1c7fda5b919cda6bf241a680592 288 SUPERFAMILY SSF55447 183 288 6.41E-26 T 23-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal RPE_RS16110 cbffc1c7fda5b919cda6bf241a680592 288 Gene3D G3DSA:3.30.43.10 6 41 4.2E-6 T 23-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 RPE_RS16110 cbffc1c7fda5b919cda6bf241a680592 288 SUPERFAMILY SSF56176 6 174 1.45E-44 T 23-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RPE_RS16110 cbffc1c7fda5b919cda6bf241a680592 288 Gene3D G3DSA:3.30.390.50 183 287 1.6E-29 T 23-04-2016 RPE_RS16110 cbffc1c7fda5b919cda6bf241a680592 288 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 6 174 1.7E-42 T 23-04-2016 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 RPE_RS08545 532042f5b5ee2dd6535017636dc110ce 95 PANTHER PTHR34477:SF2 1 94 2.0E-31 T 23-04-2016 RPE_RS08545 532042f5b5ee2dd6535017636dc110ce 95 SUPERFAMILY SSF82771 3 90 5.49E-18 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily RPE_RS08545 532042f5b5ee2dd6535017636dc110ce 95 Pfam PF01541 GIY-YIG catalytic domain 4 70 1.6E-12 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily RPE_RS08545 532042f5b5ee2dd6535017636dc110ce 95 PANTHER PTHR34477 1 94 2.0E-31 T 23-04-2016 RPE_RS16960 c5c9f20e7c4bbcbb6a2f9367f8a78026 457 Pfam PF00072 Response regulator receiver domain 5 116 1.5E-28 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS16960 c5c9f20e7c4bbcbb6a2f9367f8a78026 457 Pfam PF00072 Response regulator receiver domain 158 268 5.2E-15 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS16960 c5c9f20e7c4bbcbb6a2f9367f8a78026 457 SMART SM00267 280 455 3.6E-65 T 23-04-2016 IPR000160 GGDEF domain RPE_RS16960 c5c9f20e7c4bbcbb6a2f9367f8a78026 457 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 291 455 3.4E-58 T 23-04-2016 IPR000160 GGDEF domain RPE_RS16960 c5c9f20e7c4bbcbb6a2f9367f8a78026 457 SMART SM00448 156 268 2.5E-16 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS16960 c5c9f20e7c4bbcbb6a2f9367f8a78026 457 SMART SM00448 3 116 1.6E-44 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS16960 c5c9f20e7c4bbcbb6a2f9367f8a78026 457 Gene3D G3DSA:3.40.50.2300 3 129 1.2E-43 T 23-04-2016 RPE_RS16960 c5c9f20e7c4bbcbb6a2f9367f8a78026 457 Gene3D G3DSA:3.40.50.2300 153 282 7.0E-26 T 23-04-2016 RPE_RS16960 c5c9f20e7c4bbcbb6a2f9367f8a78026 457 Pfam PF00990 Diguanylate cyclase, GGDEF domain 292 451 2.9E-52 T 23-04-2016 IPR000160 GGDEF domain RPE_RS16960 c5c9f20e7c4bbcbb6a2f9367f8a78026 457 PANTHER PTHR26402 3 134 2.5E-40 T 23-04-2016 RPE_RS16960 c5c9f20e7c4bbcbb6a2f9367f8a78026 457 PANTHER PTHR26402 400 414 2.5E-40 T 23-04-2016 RPE_RS16960 c5c9f20e7c4bbcbb6a2f9367f8a78026 457 PANTHER PTHR26402:SF50 3 134 2.5E-40 T 23-04-2016 RPE_RS16960 c5c9f20e7c4bbcbb6a2f9367f8a78026 457 PANTHER PTHR26402:SF50 400 414 2.5E-40 T 23-04-2016 RPE_RS16960 c5c9f20e7c4bbcbb6a2f9367f8a78026 457 SUPERFAMILY SSF55073 297 453 5.41E-51 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS16960 c5c9f20e7c4bbcbb6a2f9367f8a78026 457 SUPERFAMILY SSF52172 152 287 1.99E-27 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS16960 c5c9f20e7c4bbcbb6a2f9367f8a78026 457 Gene3D G3DSA:3.30.70.270 294 454 1.8E-57 T 23-04-2016 RPE_RS16960 c5c9f20e7c4bbcbb6a2f9367f8a78026 457 SUPERFAMILY SSF52172 2 132 7.12E-42 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS04585 edac849ca8dcf86e672351f1c5cba861 75 Pfam PF10932 Protein of unknown function (DUF2783) 3 61 6.3E-25 T 23-04-2016 IPR021233 Protein of unknown function DUF2783 RPE_RS24150 e467d77e7cfb56508e9b1753530dd406 123 Pfam PF00072 Response regulator receiver domain 4 115 1.6E-21 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS24150 e467d77e7cfb56508e9b1753530dd406 123 SUPERFAMILY SSF52172 3 120 7.12E-30 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS24150 e467d77e7cfb56508e9b1753530dd406 123 SMART SM00448 2 115 5.4E-22 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS24150 e467d77e7cfb56508e9b1753530dd406 123 PANTHER PTHR26402:SF481 2 120 4.0E-32 T 23-04-2016 RPE_RS24150 e467d77e7cfb56508e9b1753530dd406 123 Gene3D G3DSA:3.40.50.2300 3 121 1.6E-30 T 23-04-2016 RPE_RS24150 e467d77e7cfb56508e9b1753530dd406 123 PANTHER PTHR26402 2 120 4.0E-32 T 23-04-2016 RPE_RS17720 4e54692c5852911e735f7c2a8b9c6345 76 SUPERFAMILY SSF63840 23 75 2.62E-17 T 23-04-2016 IPR009105 Colicin E3-like ribonuclease domain GO:0003723|GO:0009405|GO:0016788|GO:0043022 RPE_RS17720 4e54692c5852911e735f7c2a8b9c6345 76 Gene3D G3DSA:3.10.380.10 24 75 1.8E-20 T 23-04-2016 IPR009105 Colicin E3-like ribonuclease domain GO:0003723|GO:0009405|GO:0016788|GO:0043022 RPE_RS17720 4e54692c5852911e735f7c2a8b9c6345 76 Pfam PF09000 Cytotoxic 24 74 1.1E-14 T 23-04-2016 IPR009105 Colicin E3-like ribonuclease domain GO:0003723|GO:0009405|GO:0016788|GO:0043022 RPE_RS02360 b645d9908147bb10fb270f8e314891f3 253 SUPERFAMILY SSF53335 16 250 4.34E-43 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS02360 b645d9908147bb10fb270f8e314891f3 253 PANTHER PTHR10108:SF24 7 251 1.2E-119 T 23-04-2016 RPE_RS02360 b645d9908147bb10fb270f8e314891f3 253 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 24 251 2.0E-78 T 23-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RPE_RS02360 b645d9908147bb10fb270f8e314891f3 253 PANTHER PTHR10108 7 251 1.2E-119 T 23-04-2016 RPE_RS02360 b645d9908147bb10fb270f8e314891f3 253 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 160 174 - T 23-04-2016 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RPE_RS02360 b645d9908147bb10fb270f8e314891f3 253 Pfam PF01209 ubiE/COQ5 methyltransferase family 20 251 3.4E-81 T 23-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RPE_RS02360 b645d9908147bb10fb270f8e314891f3 253 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 15 252 36.749 T 23-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RPE_RS02360 b645d9908147bb10fb270f8e314891f3 253 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 35 50 - T 23-04-2016 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RPE_RS02360 b645d9908147bb10fb270f8e314891f3 253 Gene3D G3DSA:3.40.50.150 23 252 1.5E-52 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS03705 f7a05175ef7ca4ef140cf10079a5cc36 152 SUPERFAMILY SSF52096 49 128 4.77E-5 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS22740 2b5835fba899fb29892b493049abca58 505 Gene3D G3DSA:3.40.50.2000 2 238 2.0E-61 T 23-04-2016 RPE_RS22740 2b5835fba899fb29892b493049abca58 505 Pfam PF00982 Glycosyltransferase family 20 17 454 2.2E-116 T 23-04-2016 IPR001830 Glycosyl transferase, family 20 GO:0003824|GO:0005992 RPE_RS22740 2b5835fba899fb29892b493049abca58 505 Gene3D G3DSA:3.40.50.2000 239 438 1.8E-72 T 23-04-2016 RPE_RS22740 2b5835fba899fb29892b493049abca58 505 PANTHER PTHR10788 2 463 1.1E-174 T 23-04-2016 RPE_RS22740 2b5835fba899fb29892b493049abca58 505 SUPERFAMILY SSF53756 2 456 1.38E-135 T 23-04-2016 RPE_RS22740 2b5835fba899fb29892b493049abca58 505 PANTHER PTHR10788:SF6 2 463 1.1E-174 T 23-04-2016 RPE_RS22740 2b5835fba899fb29892b493049abca58 505 TIGRFAM TIGR02400 trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 2 454 3.1E-173 T 23-04-2016 IPR012766 Alpha,alpha-trehalose-phosphate synthase GO:0003825|GO:0005992 KEGG: 00500+2.4.1.15 RPE_RS08210 131496b75ce1c95ee483d2940936df66 355 PANTHER PTHR10289:SF5 11 353 6.0E-120 T 23-04-2016 RPE_RS08210 131496b75ce1c95ee483d2940936df66 355 Pfam PF01212 Beta-eliminating lyase 19 298 3.7E-87 T 23-04-2016 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 RPE_RS08210 131496b75ce1c95ee483d2940936df66 355 Gene3D G3DSA:3.40.640.10 14 262 1.0E-71 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS08210 131496b75ce1c95ee483d2940936df66 355 SUPERFAMILY SSF53383 17 353 6.05E-106 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS08210 131496b75ce1c95ee483d2940936df66 355 PANTHER PTHR10289 11 353 6.0E-120 T 23-04-2016 RPE_RS08210 131496b75ce1c95ee483d2940936df66 355 Gene3D G3DSA:3.90.1150.10 263 353 8.2E-26 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS08210 131496b75ce1c95ee483d2940936df66 355 PIRSF PIRSF017617 8 355 2.0E-134 T 23-04-2016 IPR023603 Threonine aldolase RPE_RS23485 e357fa903c6bed8856e07f59c0a60b02 343 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 27 207 6.2E-49 T 23-04-2016 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RPE_RS23485 e357fa903c6bed8856e07f59c0a60b02 343 PANTHER PTHR11807 27 245 2.9E-65 T 23-04-2016 RPE_RS23485 e357fa903c6bed8856e07f59c0a60b02 343 Gene3D G3DSA:3.40.50.620 27 189 2.6E-18 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS23485 e357fa903c6bed8856e07f59c0a60b02 343 Pfam PF01171 PP-loop family 27 207 6.7E-54 T 23-04-2016 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal RPE_RS23485 e357fa903c6bed8856e07f59c0a60b02 343 SUPERFAMILY SSF52402 20 220 1.21E-52 T 23-04-2016 RPE_RS23485 e357fa903c6bed8856e07f59c0a60b02 343 PANTHER PTHR11807:SF2 27 245 2.9E-65 T 23-04-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RPE_RS23485 e357fa903c6bed8856e07f59c0a60b02 343 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 14 323 21.38 T 23-04-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RPE_RS11015 4619bcc57079e7f679ec41d03849c8d5 283 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 2.5E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11015 4619bcc57079e7f679ec41d03849c8d5 283 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 2.5E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11015 4619bcc57079e7f679ec41d03849c8d5 283 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 2.5E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11015 4619bcc57079e7f679ec41d03849c8d5 283 SUPERFAMILY SSF51735 2 245 2.72E-57 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS11015 4619bcc57079e7f679ec41d03849c8d5 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 2.1E-20 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11015 4619bcc57079e7f679ec41d03849c8d5 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 2.1E-20 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11015 4619bcc57079e7f679ec41d03849c8d5 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 2.1E-20 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11015 4619bcc57079e7f679ec41d03849c8d5 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 2.1E-20 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11015 4619bcc57079e7f679ec41d03849c8d5 283 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 2.1E-20 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11015 4619bcc57079e7f679ec41d03849c8d5 283 Gene3D G3DSA:3.40.50.720 3 273 4.6E-63 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS11015 4619bcc57079e7f679ec41d03849c8d5 283 Pfam PF00106 short chain dehydrogenase 4 198 2.4E-47 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11015 4619bcc57079e7f679ec41d03849c8d5 283 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RPE_RS11015 4619bcc57079e7f679ec41d03849c8d5 283 PANTHER PTHR24322 6 138 1.3E-47 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11015 4619bcc57079e7f679ec41d03849c8d5 283 PANTHER PTHR24322 154 190 1.3E-47 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS11015 4619bcc57079e7f679ec41d03849c8d5 283 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 2 190 0.0013 T 23-04-2016 RPE_RS21650 0a4b027e0c0ca8cb00944e7e67da6b37 515 Pfam PF03098 Animal haem peroxidase 103 470 4.7E-21 T 23-04-2016 IPR019791 Haem peroxidase, animal RPE_RS21650 0a4b027e0c0ca8cb00944e7e67da6b37 515 SUPERFAMILY SSF48113 29 509 1.65E-80 T 23-04-2016 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 RPE_RS21650 0a4b027e0c0ca8cb00944e7e67da6b37 515 PANTHER PTHR11475 108 284 2.5E-16 T 23-04-2016 RPE_RS21650 0a4b027e0c0ca8cb00944e7e67da6b37 515 Gene3D G3DSA:1.10.640.10 70 476 2.1E-54 T 23-04-2016 IPR019791 Haem peroxidase, animal RPE_RS04675 8d930b797e1793a7a60d122053ccba1e 311 SUPERFAMILY SSF53335 21 294 2.99E-44 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS04675 8d930b797e1793a7a60d122053ccba1e 311 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 21 297 1.1E-59 T 23-04-2016 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 RPE_RS04675 8d930b797e1793a7a60d122053ccba1e 311 PIRSF PIRSF037167 5 311 1.9E-106 T 23-04-2016 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 RPE_RS04675 8d930b797e1793a7a60d122053ccba1e 311 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 17 307 1.1E-114 T 23-04-2016 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 RPE_RS04675 8d930b797e1793a7a60d122053ccba1e 311 PANTHER PTHR18895:SF66 19 295 8.2E-130 T 23-04-2016 RPE_RS04675 8d930b797e1793a7a60d122053ccba1e 311 PANTHER PTHR18895 19 295 8.2E-130 T 23-04-2016 RPE_RS04675 8d930b797e1793a7a60d122053ccba1e 311 Pfam PF05175 Methyltransferase small domain 146 226 2.6E-15 T 23-04-2016 IPR007848 Methyltransferase small domain GO:0008168 RPE_RS04675 8d930b797e1793a7a60d122053ccba1e 311 Gene3D G3DSA:3.40.50.150 143 293 3.1E-48 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS04675 8d930b797e1793a7a60d122053ccba1e 311 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 217 223 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RPE_RS04675 8d930b797e1793a7a60d122053ccba1e 311 Gene3D G3DSA:1.10.8.10 32 109 2.2E-7 T 23-04-2016 RPE_RS23090 27ca2221fa452eace2433918af32e35a 427 PANTHER PTHR22935:SF2 99 425 1.4E-109 T 23-04-2016 RPE_RS23090 27ca2221fa452eace2433918af32e35a 427 PANTHER PTHR22935 99 425 1.4E-109 T 23-04-2016 RPE_RS23090 27ca2221fa452eace2433918af32e35a 427 Gene3D G3DSA:3.40.710.10 118 401 1.1E-44 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS23090 27ca2221fa452eace2433918af32e35a 427 Pfam PF00144 Beta-lactamase 118 399 1.9E-35 T 23-04-2016 IPR001466 Beta-lactamase-related RPE_RS23090 27ca2221fa452eace2433918af32e35a 427 SUPERFAMILY SSF56601 53 420 1.99E-91 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS10000 86c76e2b0c2d2faa223e98c63abf4c9b 117 PANTHER PTHR34299 3 117 1.2E-32 T 23-04-2016 RPE_RS10000 86c76e2b0c2d2faa223e98c63abf4c9b 117 Gene3D G3DSA:1.10.3830.10 3 113 6.3E-34 T 23-04-2016 RPE_RS10000 86c76e2b0c2d2faa223e98c63abf4c9b 117 Pfam PF01219 Prokaryotic diacylglycerol kinase 10 108 7.0E-29 T 23-04-2016 IPR000829 Diacylglycerol kinase, prokaryotic GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039 RPE_RS10000 86c76e2b0c2d2faa223e98c63abf4c9b 117 PANTHER PTHR34299:SF1 3 117 1.2E-32 T 23-04-2016 RPE_RS16995 746a063714ace7eed585e9eed8f49550 155 SUPERFAMILY SSF55298 4 154 8.33E-51 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like RPE_RS16995 746a063714ace7eed585e9eed8f49550 155 PANTHER PTHR11803:SF2 1 154 1.6E-60 T 23-04-2016 RPE_RS16995 746a063714ace7eed585e9eed8f49550 155 PANTHER PTHR11803 1 154 1.6E-60 T 23-04-2016 IPR006175 YjgF/YER057c/UK114 family RPE_RS16995 746a063714ace7eed585e9eed8f49550 155 Pfam PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease 6 148 6.8E-36 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like RPE_RS16995 746a063714ace7eed585e9eed8f49550 155 Gene3D G3DSA:3.30.1330.40 3 154 1.6E-60 T 23-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like RPE_RS07820 6ce328f3edf47ba11d54f524727fed77 256 PANTHER PTHR30065:SF1 1 252 3.7E-75 T 23-04-2016 RPE_RS07820 6ce328f3edf47ba11d54f524727fed77 256 PANTHER PTHR30065 1 252 3.7E-75 T 23-04-2016 RPE_RS07820 6ce328f3edf47ba11d54f524727fed77 256 Pfam PF01311 Bacterial export proteins, family 1 13 245 2.7E-64 T 23-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RPE_RS07820 6ce328f3edf47ba11d54f524727fed77 256 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 21 42 1.1E-22 T 23-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RPE_RS07820 6ce328f3edf47ba11d54f524727fed77 256 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 203 222 1.1E-22 T 23-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RPE_RS07820 6ce328f3edf47ba11d54f524727fed77 256 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 181 203 1.1E-22 T 23-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RPE_RS07820 6ce328f3edf47ba11d54f524727fed77 256 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 81 100 1.1E-22 T 23-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RPE_RS07820 6ce328f3edf47ba11d54f524727fed77 256 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 13 252 6.6E-63 T 23-04-2016 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 RPE_RS13245 905c03c6ff69e8e62bce8648fcf2168e 406 PANTHER PTHR11638:SF117 111 404 2.1E-44 T 23-04-2016 RPE_RS13245 905c03c6ff69e8e62bce8648fcf2168e 406 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 150 168 3.3E-16 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 RPE_RS13245 905c03c6ff69e8e62bce8648fcf2168e 406 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 192 210 3.3E-16 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 RPE_RS13245 905c03c6ff69e8e62bce8648fcf2168e 406 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 221 239 3.3E-16 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 RPE_RS13245 905c03c6ff69e8e62bce8648fcf2168e 406 PANTHER PTHR11638 111 404 2.1E-44 T 23-04-2016 RPE_RS13245 905c03c6ff69e8e62bce8648fcf2168e 406 SUPERFAMILY SSF52540 111 379 6.75E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS13245 905c03c6ff69e8e62bce8648fcf2168e 406 Pfam PF07724 AAA domain (Cdc48 subfamily) 145 309 1.6E-21 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RPE_RS13245 905c03c6ff69e8e62bce8648fcf2168e 406 Gene3D G3DSA:3.40.50.300 111 328 3.0E-34 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS13245 905c03c6ff69e8e62bce8648fcf2168e 406 SMART SM00382 146 284 3.0E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS04645 e4d5f6a0e15758890fb1cac38b83b405 70 SUPERFAMILY SSF50249 2 68 3.21E-22 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS04645 e4d5f6a0e15758890fb1cac38b83b405 70 PIRSF PIRSF002599 1 70 1.1E-22 T 23-04-2016 IPR012156 Cold shock, CspA GO:0003676 RPE_RS04645 e4d5f6a0e15758890fb1cac38b83b405 70 Pfam PF00313 'Cold-shock' DNA-binding domain 3 68 4.5E-23 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RPE_RS04645 e4d5f6a0e15758890fb1cac38b83b405 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 16 35 - T 23-04-2016 IPR019844 Cold-shock conserved site RPE_RS04645 e4d5f6a0e15758890fb1cac38b83b405 70 Gene3D G3DSA:2.40.50.140 3 68 7.8E-27 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS04645 e4d5f6a0e15758890fb1cac38b83b405 70 SMART SM00357 4 70 1.4E-24 T 23-04-2016 IPR011129 Cold shock protein GO:0003676 RPE_RS04645 e4d5f6a0e15758890fb1cac38b83b405 70 PANTHER PTHR11544 1 68 4.2E-23 T 23-04-2016 RPE_RS04645 e4d5f6a0e15758890fb1cac38b83b405 70 PRINTS PR00050 Cold shock protein signature 5 20 3.2E-13 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RPE_RS04645 e4d5f6a0e15758890fb1cac38b83b405 70 PRINTS PR00050 Cold shock protein signature 41 59 3.2E-13 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RPE_RS04645 e4d5f6a0e15758890fb1cac38b83b405 70 PRINTS PR00050 Cold shock protein signature 26 35 3.2E-13 T 23-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RPE_RS14045 2a303586b0ba38b046074fd9090eb4cd 320 Pfam PF03547 Membrane transport protein 161 303 9.2E-14 T 23-04-2016 IPR004776 Auxin efflux carrier GO:0016021|GO:0055085 RPE_RS14045 2a303586b0ba38b046074fd9090eb4cd 320 Pfam PF03547 Membrane transport protein 9 148 2.5E-8 T 23-04-2016 IPR004776 Auxin efflux carrier GO:0016021|GO:0055085 RPE_RS14045 2a303586b0ba38b046074fd9090eb4cd 320 PANTHER PTHR31752 99 311 2.2E-28 T 23-04-2016 RPE_RS00420 e05732665b23cf3940c613e7ea9c377e 247 SUPERFAMILY SSF57884 203 243 4.45E-5 T 23-04-2016 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 RPE_RS00420 e05732665b23cf3940c613e7ea9c377e 247 Gene3D G3DSA:2.40.50.90 36 141 4.3E-9 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RPE_RS00420 e05732665b23cf3940c613e7ea9c377e 247 SUPERFAMILY SSF50199 21 146 8.24E-19 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RPE_RS00420 e05732665b23cf3940c613e7ea9c377e 247 Pfam PF00565 Staphylococcal nuclease homologue 37 141 3.7E-6 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RPE_RS00420 e05732665b23cf3940c613e7ea9c377e 247 SMART SM00318 16 142 0.0046 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RPE_RS21305 6bbba576cfd296d404d9bc36ac2d1a7d 710 PIRSF PIRSF005419 20 710 1.1E-237 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RPE_RS21305 6bbba576cfd296d404d9bc36ac2d1a7d 710 Pfam PF00771 FHIPEP family 40 701 1.5E-256 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RPE_RS21305 6bbba576cfd296d404d9bc36ac2d1a7d 710 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 30 710 2.2E-272 T 23-04-2016 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 RPE_RS21305 6bbba576cfd296d404d9bc36ac2d1a7d 710 PANTHER PTHR30161 15 710 0.0 T 23-04-2016 RPE_RS21305 6bbba576cfd296d404d9bc36ac2d1a7d 710 PANTHER PTHR30161:SF1 15 710 0.0 T 23-04-2016 RPE_RS21305 6bbba576cfd296d404d9bc36ac2d1a7d 710 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 251 265 1.5E-52 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RPE_RS21305 6bbba576cfd296d404d9bc36ac2d1a7d 710 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 47 60 1.5E-52 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RPE_RS21305 6bbba576cfd296d404d9bc36ac2d1a7d 710 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 84 103 1.5E-52 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RPE_RS21305 6bbba576cfd296d404d9bc36ac2d1a7d 710 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 151 167 1.5E-52 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RPE_RS21305 6bbba576cfd296d404d9bc36ac2d1a7d 710 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 200 217 1.5E-52 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RPE_RS21305 6bbba576cfd296d404d9bc36ac2d1a7d 710 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 170 188 1.5E-52 T 23-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RPE_RS07230 ef73dc1b7e76a405c9c0531780474ad2 234 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 7 185 1.1E-43 T 23-04-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 RPE_RS07230 ef73dc1b7e76a405c9c0531780474ad2 234 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 5 186 28.649 T 23-04-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 RPE_RS07230 ef73dc1b7e76a405c9c0531780474ad2 234 PANTHER PTHR33284:SF1 6 213 9.3E-65 T 23-04-2016 RPE_RS07230 ef73dc1b7e76a405c9c0531780474ad2 234 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 6 97 1.0E-33 T 23-04-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 RPE_RS07230 ef73dc1b7e76a405c9c0531780474ad2 234 SUPERFAMILY SSF50715 5 193 1.27E-52 T 23-04-2016 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: REACT_71 RPE_RS07230 ef73dc1b7e76a405c9c0531780474ad2 234 Gene3D G3DSA:2.40.240.10 6 96 4.3E-28 T 23-04-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: REACT_71 RPE_RS07230 ef73dc1b7e76a405c9c0531780474ad2 234 PANTHER PTHR33284 6 213 9.3E-65 T 23-04-2016 RPE_RS07230 ef73dc1b7e76a405c9c0531780474ad2 234 Pfam PF01386 Ribosomal L25p family 7 94 9.2E-22 T 23-04-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 RPE_RS07230 ef73dc1b7e76a405c9c0531780474ad2 234 Gene3D G3DSA:2.170.120.20 100 193 3.3E-27 T 23-04-2016 IPR020057 Ribosomal protein L25, beta domain RPE_RS07230 ef73dc1b7e76a405c9c0531780474ad2 234 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 103 187 2.1E-26 T 23-04-2016 IPR020057 Ribosomal protein L25, beta domain RPE_RS06695 87acf5964896193b7b95b77f530492b8 529 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 82 472 1.5E-44 T 23-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 RPE_RS06695 87acf5964896193b7b95b77f530492b8 529 SUPERFAMILY SSF53807 74 486 9.48E-62 T 23-04-2016 RPE_RS06695 87acf5964896193b7b95b77f530492b8 529 TIGRFAM TIGR02015 BchY: chlorophyllide reductase subunit Y 69 490 3.5E-212 T 23-04-2016 IPR010245 Chlorophyllide reductase subunit Y GO:0015979|GO:0016021|GO:0016731|GO:0030494 KEGG: 00860+1.3.99.35|MetaCyc: PWY-5526|UniPathway: UPA00671 RPE_RS06695 87acf5964896193b7b95b77f530492b8 529 PANTHER PTHR39429:SF2 78 495 2.2E-57 T 23-04-2016 RPE_RS06695 87acf5964896193b7b95b77f530492b8 529 PANTHER PTHR39429 78 495 2.2E-57 T 23-04-2016 RPE_RS06695 87acf5964896193b7b95b77f530492b8 529 PIRSF PIRSF000163 72 529 4.9E-143 T 23-04-2016 IPR016209 Protochlorophyllide reductase, ChlB, light independent GO:0016730|GO:0046148|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RPE_RS21280 a59a10cab524855d4ffb0c3bc3cae52a 475 PANTHER PTHR13285:SF23 1 431 1.0E-97 T 23-04-2016 RPE_RS21280 a59a10cab524855d4ffb0c3bc3cae52a 475 PIRSF PIRSF016636 1 475 1.1E-140 T 23-04-2016 IPR024194 Alginate O-acetyltransferase AlgI/D-alanyl transfer protein DltB RPE_RS21280 a59a10cab524855d4ffb0c3bc3cae52a 475 Pfam PF03062 MBOAT, membrane-bound O-acyltransferase family 146 371 5.7E-26 T 23-04-2016 IPR004299 Membrane bound O-acyl transferase, MBOAT RPE_RS21280 a59a10cab524855d4ffb0c3bc3cae52a 475 PANTHER PTHR13285 1 431 1.0E-97 T 23-04-2016 RPE_RS21280 a59a10cab524855d4ffb0c3bc3cae52a 475 PIRSF PIRSF500217 1 475 5.2E-146 T 23-04-2016 IPR028362 Alginate O-acetyltransferase AlgI GO:0042121 KEGG: 00061+2.3.1.-|KEGG: 00253+2.3.1.-|KEGG: 00261+2.3.1.-|KEGG: 00310+2.3.1.-|KEGG: 00330+2.3.1.-|KEGG: 00332+2.3.1.-|KEGG: 00340+2.3.1.-|KEGG: 00350+2.3.1.-|KEGG: 00564+2.3.1.-|KEGG: 00565+2.3.1.-|KEGG: 00604+2.3.1.-|KEGG: 00623+2.3.1.-|KEGG: 00626+2.3.1.-|KEGG: 00627+2.3.1.-|KEGG: 00642+2.3.1.-|KEGG: 00650+2.3.1.-|KEGG: 00680+2.3.1.-|KEGG: 00903+2.3.1.-|KEGG: 00904+2.3.1.-|KEGG: 00906+2.3.1.-|KEGG: 00940+2.3.1.-|KEGG: 00942+2.3.1.-|KEGG: 00950+2.3.1.-|KEGG: 00960+2.3.1.-|KEGG: 00965+2.3.1.-|UniPathway: UPA00286 RPE_RS22605 bb8b2e7855c40c4976992866d3a88f63 67 PIRSF PIRSF037676 1 67 2.4E-25 T 23-04-2016 IPR007774 Putative nitrogen fixation protein RPE_RS22605 bb8b2e7855c40c4976992866d3a88f63 67 Pfam PF05082 Rop-like 2 64 2.6E-29 T 23-04-2016 IPR007774 Putative nitrogen fixation protein RPE_RS22605 bb8b2e7855c40c4976992866d3a88f63 67 Gene3D G3DSA:1.10.287.660 1 65 1.1E-29 T 23-04-2016 IPR029012 Helix hairpin bin domain RPE_RS12290 896d5ab2c0d910e2a66a1189424aada9 234 Pfam PF12849 PBP superfamily domain 4 215 1.1E-10 T 23-04-2016 IPR024370 PBP domain RPE_RS12290 896d5ab2c0d910e2a66a1189424aada9 234 Gene3D G3DSA:3.40.190.10 3 111 3.3E-10 T 23-04-2016 RPE_RS12290 896d5ab2c0d910e2a66a1189424aada9 234 SUPERFAMILY SSF53850 3 232 1.19E-26 T 23-04-2016 RPE_RS14485 9964a953f9050aa5ea88baf5b6222089 105 Pfam PF08803 Putative mono-oxygenase ydhR 6 68 1.2E-7 T 23-04-2016 IPR014910 Putative monooxygenase YdhR KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.- RPE_RS14485 9964a953f9050aa5ea88baf5b6222089 105 SUPERFAMILY SSF54909 1 97 4.83E-27 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RPE_RS04580 dc59b8090dfc22cd88b0628c5636d852 539 PANTHER PTHR13789 3 442 2.9E-212 T 23-04-2016 RPE_RS04580 dc59b8090dfc22cd88b0628c5636d852 539 SUPERFAMILY SSF51905 286 396 2.4E-59 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS04580 dc59b8090dfc22cd88b0628c5636d852 539 SUPERFAMILY SSF51905 26 196 2.4E-59 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS04580 dc59b8090dfc22cd88b0628c5636d852 539 Gene3D G3DSA:3.30.9.10 347 395 2.8E-12 T 23-04-2016 RPE_RS04580 dc59b8090dfc22cd88b0628c5636d852 539 Gene3D G3DSA:3.30.9.10 188 292 2.8E-12 T 23-04-2016 RPE_RS04580 dc59b8090dfc22cd88b0628c5636d852 539 Gene3D G3DSA:3.50.50.60 24 187 2.1E-45 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS04580 dc59b8090dfc22cd88b0628c5636d852 539 Gene3D G3DSA:3.50.50.60 297 335 2.1E-45 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS04580 dc59b8090dfc22cd88b0628c5636d852 539 PANTHER PTHR13789:SF219 3 442 2.9E-212 T 23-04-2016 RPE_RS04580 dc59b8090dfc22cd88b0628c5636d852 539 Pfam PF01494 FAD binding domain 26 363 9.9E-55 T 23-04-2016 IPR002938 FAD-binding domain GO:0071949 RPE_RS04580 dc59b8090dfc22cd88b0628c5636d852 539 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 332 350 1.2E-31 T 23-04-2016 RPE_RS04580 dc59b8090dfc22cd88b0628c5636d852 539 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 27 49 1.2E-31 T 23-04-2016 RPE_RS04580 dc59b8090dfc22cd88b0628c5636d852 539 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 175 190 1.2E-31 T 23-04-2016 RPE_RS04580 dc59b8090dfc22cd88b0628c5636d852 539 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 299 314 1.2E-31 T 23-04-2016 RPE_RS04580 dc59b8090dfc22cd88b0628c5636d852 539 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 314 330 1.2E-31 T 23-04-2016 RPE_RS05885 32617d29189affbaba114d913b134604 225 Gene3D G3DSA:1.25.60.10 144 206 2.4E-4 T 23-04-2016 RPE_RS05885 32617d29189affbaba114d913b134604 225 SUPERFAMILY SSF158791 154 206 4.32E-5 T 23-04-2016 RPE_RS24365 d7fda3a75ca5f58e084ece11889f926f 115 Pfam PF01909 Nucleotidyltransferase domain 14 57 2.5E-10 T 23-04-2016 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 RPE_RS24365 d7fda3a75ca5f58e084ece11889f926f 115 SUPERFAMILY SSF81301 12 109 1.31E-15 T 23-04-2016 RPE_RS24365 d7fda3a75ca5f58e084ece11889f926f 115 Gene3D G3DSA:3.30.460.10 13 109 4.5E-19 T 23-04-2016 RPE_RS24645 37fc5cdacdbea84d0900e125ae8605a7 665 PANTHER PTHR23028:SF53 1 456 6.7E-96 T 23-04-2016 RPE_RS24645 37fc5cdacdbea84d0900e125ae8605a7 665 Pfam PF01757 Acyltransferase family 5 325 7.3E-31 T 23-04-2016 IPR002656 Acyltransferase 3 GO:0016747 RPE_RS24645 37fc5cdacdbea84d0900e125ae8605a7 665 PANTHER PTHR23028 1 456 6.7E-96 T 23-04-2016 RPE_RS16510 64448a2cc2b2dd5ef231e6458d36f5a6 498 SUPERFAMILY SSF53187 178 492 7.22E-118 T 23-04-2016 RPE_RS16510 64448a2cc2b2dd5ef231e6458d36f5a6 498 PRINTS PR00481 Cytosol aminopeptidase signature 368 383 4.0E-51 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RPE_RS16510 64448a2cc2b2dd5ef231e6458d36f5a6 498 PRINTS PR00481 Cytosol aminopeptidase signature 258 275 4.0E-51 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RPE_RS16510 64448a2cc2b2dd5ef231e6458d36f5a6 498 PRINTS PR00481 Cytosol aminopeptidase signature 280 301 4.0E-51 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RPE_RS16510 64448a2cc2b2dd5ef231e6458d36f5a6 498 PRINTS PR00481 Cytosol aminopeptidase signature 339 359 4.0E-51 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RPE_RS16510 64448a2cc2b2dd5ef231e6458d36f5a6 498 PRINTS PR00481 Cytosol aminopeptidase signature 317 338 4.0E-51 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RPE_RS16510 64448a2cc2b2dd5ef231e6458d36f5a6 498 Gene3D G3DSA:3.40.220.10 9 153 7.8E-26 T 23-04-2016 RPE_RS16510 64448a2cc2b2dd5ef231e6458d36f5a6 498 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 5 496 34.729 T 23-04-2016 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 RPE_RS16510 64448a2cc2b2dd5ef231e6458d36f5a6 498 SUPERFAMILY SSF52949 7 180 4.06E-23 T 23-04-2016 RPE_RS16510 64448a2cc2b2dd5ef231e6458d36f5a6 498 PANTHER PTHR11963:SF13 44 498 4.0E-191 T 23-04-2016 RPE_RS16510 64448a2cc2b2dd5ef231e6458d36f5a6 498 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 343 350 - T 23-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RPE_RS16510 64448a2cc2b2dd5ef231e6458d36f5a6 498 PANTHER PTHR11963 44 498 4.0E-191 T 23-04-2016 RPE_RS16510 64448a2cc2b2dd5ef231e6458d36f5a6 498 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 182 487 3.3E-121 T 23-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RPE_RS16510 64448a2cc2b2dd5ef231e6458d36f5a6 498 Gene3D G3DSA:3.40.630.10 173 495 5.1E-132 T 23-04-2016 RPE_RS16510 64448a2cc2b2dd5ef231e6458d36f5a6 498 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 21 146 1.8E-23 T 23-04-2016 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RPE_RS07280 cd75c72861673098b32f415af7e412ba 600 ProSitePatterns PS00211 ABC transporters family signature. 488 502 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS07280 cd75c72861673098b32f415af7e412ba 600 Gene3D G3DSA:1.20.1560.10 30 337 1.1E-59 T 23-04-2016 RPE_RS07280 cd75c72861673098b32f415af7e412ba 600 SUPERFAMILY SSF52540 342 586 7.37E-89 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS07280 cd75c72861673098b32f415af7e412ba 600 SUPERFAMILY SSF90123 29 336 1.16E-59 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RPE_RS07280 cd75c72861673098b32f415af7e412ba 600 Pfam PF00005 ABC transporter 367 516 1.3E-32 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS07280 cd75c72861673098b32f415af7e412ba 600 Gene3D G3DSA:3.40.50.300 351 579 4.2E-80 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS07280 cd75c72861673098b32f415af7e412ba 600 PANTHER PTHR24221 19 595 1.2E-209 T 23-04-2016 RPE_RS07280 cd75c72861673098b32f415af7e412ba 600 SMART SM00382 376 562 9.3E-19 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS07280 cd75c72861673098b32f415af7e412ba 600 Pfam PF00664 ABC transporter transmembrane region 36 299 1.9E-37 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RPE_RS16415 e1cd88330f4109ab773494f572dcf80e 358 Pfam PF02541 Ppx/GppA phosphatase family 56 350 1.6E-45 T 23-04-2016 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40|UniPathway: UPA00908 RPE_RS16415 e1cd88330f4109ab773494f572dcf80e 358 SUPERFAMILY SSF53067 42 162 1.06E-34 T 23-04-2016 RPE_RS16415 e1cd88330f4109ab773494f572dcf80e 358 Gene3D G3DSA:3.30.420.150 163 352 8.6E-51 T 23-04-2016 RPE_RS16415 e1cd88330f4109ab773494f572dcf80e 358 PANTHER PTHR30005 16 355 2.8E-76 T 23-04-2016 RPE_RS16415 e1cd88330f4109ab773494f572dcf80e 358 SUPERFAMILY SSF53067 168 351 3.11E-38 T 23-04-2016 RPE_RS16415 e1cd88330f4109ab773494f572dcf80e 358 Gene3D G3DSA:3.30.420.40 38 159 3.9E-43 T 23-04-2016 RPE_RS02355 de58dd24cfd6d939475eec7df85506aa 525 PANTHER PTHR10566 38 440 1.8E-194 T 23-04-2016 RPE_RS02355 de58dd24cfd6d939475eec7df85506aa 525 Pfam PF03109 ABC1 family 112 231 9.5E-30 T 23-04-2016 IPR004147 UbiB domain RPE_RS02355 de58dd24cfd6d939475eec7df85506aa 525 PANTHER PTHR10566:SF79 38 440 1.8E-194 T 23-04-2016 RPE_RS02355 de58dd24cfd6d939475eec7df85506aa 525 SUPERFAMILY SSF56112 94 159 5.93E-41 T 23-04-2016 IPR011009 Protein kinase-like domain RPE_RS02355 de58dd24cfd6d939475eec7df85506aa 525 SUPERFAMILY SSF56112 194 434 5.93E-41 T 23-04-2016 IPR011009 Protein kinase-like domain RPE_RS02355 de58dd24cfd6d939475eec7df85506aa 525 Gene3D G3DSA:3.90.1200.10 261 312 9.3E-7 T 23-04-2016 RPE_RS02355 de58dd24cfd6d939475eec7df85506aa 525 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 9 440 3.4E-160 T 23-04-2016 IPR010232 Probable protein kinase UbiB GO:0006744 UniPathway: UPA00232 RPE_RS07395 6d1040b172afa661944242a2aef9403a 396 Pfam PF12832 MFS_1 like family 21 363 1.8E-26 T 23-04-2016 IPR024989 Major facilitator superfamily associated domain RPE_RS07395 6d1040b172afa661944242a2aef9403a 396 PIRSF PIRSF004925 11 395 9.4E-112 T 23-04-2016 IPR026032 Probable 3-phenylpropionic acid transporter RPE_RS07395 6d1040b172afa661944242a2aef9403a 396 PANTHER PTHR23522:SF3 10 381 2.3E-78 T 23-04-2016 RPE_RS07395 6d1040b172afa661944242a2aef9403a 396 Gene3D G3DSA:1.20.1250.20 206 384 3.9E-14 T 23-04-2016 RPE_RS07395 6d1040b172afa661944242a2aef9403a 396 Gene3D G3DSA:1.20.1250.20 22 189 8.7E-12 T 23-04-2016 RPE_RS07395 6d1040b172afa661944242a2aef9403a 396 PANTHER PTHR23522 10 381 2.3E-78 T 23-04-2016 RPE_RS07395 6d1040b172afa661944242a2aef9403a 396 SUPERFAMILY SSF103473 16 388 1.01E-29 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS03310 a93677c38eac6862a9d7b46d38f630af 164 Pfam PF13673 Acetyltransferase (GNAT) domain 44 144 6.7E-16 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RPE_RS03310 a93677c38eac6862a9d7b46d38f630af 164 SUPERFAMILY SSF55729 6 135 4.43E-27 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS03310 a93677c38eac6862a9d7b46d38f630af 164 Gene3D G3DSA:3.40.630.30 5 146 3.6E-28 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS03310 a93677c38eac6862a9d7b46d38f630af 164 PANTHER PTHR23091:SF266 7 144 2.9E-52 T 23-04-2016 RPE_RS03310 a93677c38eac6862a9d7b46d38f630af 164 PANTHER PTHR23091 7 144 2.9E-52 T 23-04-2016 RPE_RS21555 9a4e331f19c33c8c8e95ef194d4e3a9b 377 PANTHER PTHR39342:SF1 26 376 1.7E-77 T 23-04-2016 RPE_RS21555 9a4e331f19c33c8c8e95ef194d4e3a9b 377 PANTHER PTHR39342 26 376 1.7E-77 T 23-04-2016 RPE_RS21555 9a4e331f19c33c8c8e95ef194d4e3a9b 377 SUPERFAMILY SSF90123 85 169 6.54E-5 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RPE_RS21555 9a4e331f19c33c8c8e95ef194d4e3a9b 377 TIGRFAM TIGR01620 hyp_HI0043: TIGR01620 family protein 88 370 6.4E-64 T 23-04-2016 IPR006507 Uncharacterised protein family UPF0283 RPE_RS21555 9a4e331f19c33c8c8e95ef194d4e3a9b 377 Pfam PF05128 Domain of unknown function (DUF697) 216 374 2.4E-44 T 23-04-2016 IPR021147 Protein of unknown function DUF697 RPE_RS00680 d544501209167f32bfa0d4ad06321548 331 SUPERFAMILY SSF52540 46 291 1.36E-29 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS00680 d544501209167f32bfa0d4ad06321548 331 TIGRFAM TIGR01650 PD_CobS: cobaltochelatase, CobS subunit 12 328 3.1E-194 T 23-04-2016 IPR006537 Cobaltochelatase subunit CobS KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376|UniPathway: UPA00148 RPE_RS00680 d544501209167f32bfa0d4ad06321548 331 Pfam PF08406 CbbQ/NirQ/NorQ C-terminal 245 286 3.3E-4 T 23-04-2016 IPR013615 CbbQ/NirQ/NorQ, C-terminal RPE_RS00680 d544501209167f32bfa0d4ad06321548 331 Pfam PF07728 AAA domain (dynein-related subfamily) 70 192 3.1E-11 T 23-04-2016 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 RPE_RS00680 d544501209167f32bfa0d4ad06321548 331 Gene3D G3DSA:3.40.50.300 60 232 3.6E-24 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS00680 d544501209167f32bfa0d4ad06321548 331 SMART SM00382 66 243 0.0032 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS00680 d544501209167f32bfa0d4ad06321548 331 Pfam PF12556 Cobaltochelatase CobS subunit N terminal 11 43 4.5E-18 T 23-04-2016 IPR025865 Cobaltochelatase subunit CobS N-terminal domain KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376|UniPathway: UPA00148 RPE_RS05935 900c5611c46a1da69a40fa17600130ff 203 SUPERFAMILY SSF53955 107 176 1.56E-20 T 23-04-2016 IPR023346 Lysozyme-like domain RPE_RS05935 900c5611c46a1da69a40fa17600130ff 203 SUPERFAMILY SSF53955 44 80 1.56E-20 T 23-04-2016 IPR023346 Lysozyme-like domain RPE_RS05935 900c5611c46a1da69a40fa17600130ff 203 Pfam PF01464 Transglycosylase SLT domain 88 173 1.3E-10 T 23-04-2016 IPR008258 Transglycosylase SLT domain 1 RPE_RS05935 900c5611c46a1da69a40fa17600130ff 203 Gene3D G3DSA:1.10.530.10 43 176 9.6E-20 T 23-04-2016 RPE_RS18565 50dda79bbcb57750cf99c65ba359a3d3 345 TIGRFAM TIGR00872 gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating) 1 323 2.5E-120 T 23-04-2016 IPR004849 6-phosphogluconate dehydrogenase, YqeC-type GO:0055114 RPE_RS18565 50dda79bbcb57750cf99c65ba359a3d3 345 Gene3D G3DSA:3.40.50.720 1 186 5.3E-48 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS18565 50dda79bbcb57750cf99c65ba359a3d3 345 SUPERFAMILY SSF48179 183 321 3.13E-40 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RPE_RS18565 50dda79bbcb57750cf99c65ba359a3d3 345 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 1 24 5.8E-18 T 23-04-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 RPE_RS18565 50dda79bbcb57750cf99c65ba359a3d3 345 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 258 285 5.8E-18 T 23-04-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 RPE_RS18565 50dda79bbcb57750cf99c65ba359a3d3 345 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 174 202 5.8E-18 T 23-04-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 RPE_RS18565 50dda79bbcb57750cf99c65ba359a3d3 345 SUPERFAMILY SSF51735 1 159 1.11E-45 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS18565 50dda79bbcb57750cf99c65ba359a3d3 345 SMART SM01350 185 330 1.0E-6 T 23-04-2016 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 RPE_RS18565 50dda79bbcb57750cf99c65ba359a3d3 345 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 185 303 5.8E-22 T 23-04-2016 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 RPE_RS18565 50dda79bbcb57750cf99c65ba359a3d3 345 PANTHER PTHR11811 1 325 1.4E-165 T 23-04-2016 RPE_RS18565 50dda79bbcb57750cf99c65ba359a3d3 345 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 154 3.6E-39 T 23-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 RPE_RS18565 50dda79bbcb57750cf99c65ba359a3d3 345 PANTHER PTHR11811:SF28 1 325 1.4E-165 T 23-04-2016 RPE_RS18565 50dda79bbcb57750cf99c65ba359a3d3 345 Gene3D G3DSA:1.10.1040.10 187 317 3.9E-37 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RPE_RS13480 34bfa58d024ab3523c63463aa55d0ddc 106 Pfam PF04892 VanZ like family 37 103 5.8E-8 T 23-04-2016 IPR006976 VanZ-like RPE_RS13480 34bfa58d024ab3523c63463aa55d0ddc 106 PIRSF PIRSF033367 1 106 4.3E-33 T 23-04-2016 IPR017015 Uncharacterised conserved protein UCP033367, VanZ, Bll3170 RPE_RS16660 3e7b814b3b50889150e87aad2bc34ddd 241 Gene3D G3DSA:3.40.50.300 20 226 9.7E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16660 3e7b814b3b50889150e87aad2bc34ddd 241 PANTHER PTHR24220 7 223 1.8E-84 T 23-04-2016 RPE_RS16660 3e7b814b3b50889150e87aad2bc34ddd 241 SUPERFAMILY SSF52540 6 228 1.04E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS16660 3e7b814b3b50889150e87aad2bc34ddd 241 SMART SM00382 34 222 8.2E-19 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS16660 3e7b814b3b50889150e87aad2bc34ddd 241 Pfam PF00005 ABC transporter 27 174 3.8E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS16660 3e7b814b3b50889150e87aad2bc34ddd 241 PANTHER PTHR24220:SF86 7 223 1.8E-84 T 23-04-2016 RPE_RS16660 3e7b814b3b50889150e87aad2bc34ddd 241 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS22790 631c946d3add89aadc88f751028808b3 351 Pfam PF00892 EamA-like transporter family 5 145 5.4E-16 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RPE_RS22790 631c946d3add89aadc88f751028808b3 351 Pfam PF00892 EamA-like transporter family 157 286 4.4E-10 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RPE_RS22790 631c946d3add89aadc88f751028808b3 351 PANTHER PTHR12715:SF11 1 297 2.9E-21 T 23-04-2016 RPE_RS22790 631c946d3add89aadc88f751028808b3 351 SUPERFAMILY SSF103481 66 149 4.32E-12 T 23-04-2016 RPE_RS22790 631c946d3add89aadc88f751028808b3 351 SUPERFAMILY SSF103481 194 290 1.09E-9 T 23-04-2016 RPE_RS22790 631c946d3add89aadc88f751028808b3 351 PANTHER PTHR12715 1 297 2.9E-21 T 23-04-2016 RPE_RS07755 953f7523b6396413f4ca61d03f095475 249 Gene3D G3DSA:1.25.60.10 161 219 1.9E-4 T 23-04-2016 RPE_RS07755 953f7523b6396413f4ca61d03f095475 249 SUPERFAMILY SSF158791 161 222 1.96E-5 T 23-04-2016 RPE_RS17905 04bb305e96982e548ff24d2fa1203e7d 185 Gene3D G3DSA:3.30.1440.10 8 184 1.1E-76 T 23-04-2016 IPR022803 Ribosomal protein L5 domain RPE_RS17905 04bb305e96982e548ff24d2fa1203e7d 185 PANTHER PTHR11994 1 185 4.8E-96 T 23-04-2016 RPE_RS17905 04bb305e96982e548ff24d2fa1203e7d 185 ProSitePatterns PS00358 Ribosomal protein L5 signature. 63 79 - T 23-04-2016 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17905 04bb305e96982e548ff24d2fa1203e7d 185 PIRSF PIRSF002161 3 185 6.3E-67 T 23-04-2016 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 RPE_RS17905 04bb305e96982e548ff24d2fa1203e7d 185 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 7 185 41.917 T 23-04-2016 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17905 04bb305e96982e548ff24d2fa1203e7d 185 SUPERFAMILY SSF55282 9 184 6.36E-75 T 23-04-2016 IPR022803 Ribosomal protein L5 domain RPE_RS17905 04bb305e96982e548ff24d2fa1203e7d 185 Pfam PF00673 ribosomal L5P family C-terminus 90 183 2.8E-41 T 23-04-2016 IPR031309 Ribosomal protein L5, C-terminal RPE_RS17905 04bb305e96982e548ff24d2fa1203e7d 185 Pfam PF00281 Ribosomal protein L5 30 86 8.2E-24 T 23-04-2016 IPR031310 Ribosomal protein L5, N-terminal RPE_RS20855 76f32b2e2d1e58184a2717ca310fe3aa 157 Pfam PF06186 Protein of unknown function (DUF992) 16 154 1.9E-53 T 23-04-2016 IPR009333 Protein of unknown function DUF992 RPE_RS12005 67bbd1d1f4217f8efc0260f7c9e88daf 606 PANTHER PTHR19211 6 530 1.1E-155 T 23-04-2016 RPE_RS12005 67bbd1d1f4217f8efc0260f7c9e88daf 606 SUPERFAMILY SSF52540 3 199 1.45E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12005 67bbd1d1f4217f8efc0260f7c9e88daf 606 Pfam PF00005 ABC transporter 299 433 3.9E-22 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS12005 67bbd1d1f4217f8efc0260f7c9e88daf 606 Pfam PF00005 ABC transporter 21 148 1.4E-23 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS12005 67bbd1d1f4217f8efc0260f7c9e88daf 606 SUPERFAMILY SSF52540 277 485 2.92E-46 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12005 67bbd1d1f4217f8efc0260f7c9e88daf 606 SMART SM00382 30 193 9.5E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS12005 67bbd1d1f4217f8efc0260f7c9e88daf 606 SMART SM00382 307 479 1.1E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS12005 67bbd1d1f4217f8efc0260f7c9e88daf 606 Gene3D G3DSA:3.40.50.300 282 495 5.5E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12005 67bbd1d1f4217f8efc0260f7c9e88daf 606 Gene3D G3DSA:3.40.50.300 4 214 2.2E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12005 67bbd1d1f4217f8efc0260f7c9e88daf 606 ProSitePatterns PS00211 ABC transporters family signature. 120 134 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS12005 67bbd1d1f4217f8efc0260f7c9e88daf 606 Pfam PF16326 ABC transporter C-terminal domain 529 597 4.3E-14 T 23-04-2016 IPR032524 ABC transporter Uup, C-terminal GO:0003677 RPE_RS06895 e58ac830e3009dec0b68951f0877c23b 71 Pfam PF05532 CsbD-like 6 58 4.8E-15 T 23-04-2016 IPR008462 CsbD-like RPE_RS06895 e58ac830e3009dec0b68951f0877c23b 71 Gene3D G3DSA:1.10.1470.10 4 63 7.1E-14 T 23-04-2016 IPR008462 CsbD-like RPE_RS06895 e58ac830e3009dec0b68951f0877c23b 71 SUPERFAMILY SSF69047 5 61 1.96E-11 T 23-04-2016 IPR008462 CsbD-like RPE_RS03990 b98a21fe767a84bfc81a6db17bc4e562 355 Pfam PF01594 Domain of unknown function DUF20 12 339 4.1E-55 T 23-04-2016 IPR002549 Transmembrane protein TqsA-like RPE_RS03990 b98a21fe767a84bfc81a6db17bc4e562 355 PANTHER PTHR21716 4 355 8.6E-85 T 23-04-2016 IPR002549 Transmembrane protein TqsA-like RPE_RS03990 b98a21fe767a84bfc81a6db17bc4e562 355 PANTHER PTHR21716:SF13 4 355 8.6E-85 T 23-04-2016 RPE_RS16765 19d2fa26b78d28f5c664f6fa219d1cb0 430 ProSitePatterns PS00216 Sugar transport proteins signature 1. 82 98 - T 23-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RPE_RS16765 19d2fa26b78d28f5c664f6fa219d1cb0 430 PANTHER PTHR23504 8 409 2.2E-154 T 23-04-2016 RPE_RS16765 19d2fa26b78d28f5c664f6fa219d1cb0 430 SUPERFAMILY SSF103473 19 412 5.75E-64 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS16765 19d2fa26b78d28f5c664f6fa219d1cb0 430 Gene3D G3DSA:1.20.1250.20 20 209 2.8E-40 T 23-04-2016 RPE_RS16765 19d2fa26b78d28f5c664f6fa219d1cb0 430 Gene3D G3DSA:1.20.1250.20 229 418 5.9E-18 T 23-04-2016 RPE_RS16765 19d2fa26b78d28f5c664f6fa219d1cb0 430 PRINTS PR01035 Tetracycline resistance protein signature 268 288 5.3E-55 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RPE_RS16765 19d2fa26b78d28f5c664f6fa219d1cb0 430 PRINTS PR01035 Tetracycline resistance protein signature 296 317 5.3E-55 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RPE_RS16765 19d2fa26b78d28f5c664f6fa219d1cb0 430 PRINTS PR01035 Tetracycline resistance protein signature 180 200 5.3E-55 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RPE_RS16765 19d2fa26b78d28f5c664f6fa219d1cb0 430 PRINTS PR01035 Tetracycline resistance protein signature 152 174 5.3E-55 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RPE_RS16765 19d2fa26b78d28f5c664f6fa219d1cb0 430 PRINTS PR01035 Tetracycline resistance protein signature 33 49 5.3E-55 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RPE_RS16765 19d2fa26b78d28f5c664f6fa219d1cb0 430 PRINTS PR01035 Tetracycline resistance protein signature 356 379 5.3E-55 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RPE_RS16765 19d2fa26b78d28f5c664f6fa219d1cb0 430 PRINTS PR01035 Tetracycline resistance protein signature 122 143 5.3E-55 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RPE_RS16765 19d2fa26b78d28f5c664f6fa219d1cb0 430 PRINTS PR01035 Tetracycline resistance protein signature 95 119 5.3E-55 T 23-04-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RPE_RS16765 19d2fa26b78d28f5c664f6fa219d1cb0 430 Pfam PF07690 Major Facilitator Superfamily 27 372 1.4E-48 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RPE_RS16765 19d2fa26b78d28f5c664f6fa219d1cb0 430 PANTHER PTHR23504:SF18 8 409 2.2E-154 T 23-04-2016 RPE_RS11215 a72b436d41ed61fcb4b37baac5a8e2db 340 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 6 200 3.3E-54 T 23-04-2016 IPR003495 CobW/HypB/UreG, nucleotide-binding domain RPE_RS11215 a72b436d41ed61fcb4b37baac5a8e2db 340 PANTHER PTHR13748:SF10 3 337 1.8E-101 T 23-04-2016 IPR012824 Cobalamin (vitamin B12) biosynthesis CobW GO:0009236 UniPathway: UPA00148 RPE_RS11215 a72b436d41ed61fcb4b37baac5a8e2db 340 SUPERFAMILY SSF52540 3 230 9.3E-29 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS11215 a72b436d41ed61fcb4b37baac5a8e2db 340 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 250 338 2.2E-13 T 23-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RPE_RS11215 a72b436d41ed61fcb4b37baac5a8e2db 340 TIGRFAM TIGR02475 CobW: cobalamin biosynthesis protein CobW 3 335 1.6E-130 T 23-04-2016 IPR012824 Cobalamin (vitamin B12) biosynthesis CobW GO:0009236 UniPathway: UPA00148 RPE_RS11215 a72b436d41ed61fcb4b37baac5a8e2db 340 SUPERFAMILY SSF90002 250 337 1.27E-11 T 23-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RPE_RS11215 a72b436d41ed61fcb4b37baac5a8e2db 340 Gene3D G3DSA:3.30.1220.10 230 337 3.2E-15 T 23-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RPE_RS11215 a72b436d41ed61fcb4b37baac5a8e2db 340 SMART SM00833 250 340 4.6E-5 T 23-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RPE_RS11215 a72b436d41ed61fcb4b37baac5a8e2db 340 Gene3D G3DSA:3.40.50.300 3 225 4.0E-61 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS11215 a72b436d41ed61fcb4b37baac5a8e2db 340 PANTHER PTHR13748 3 337 1.8E-101 T 23-04-2016 RPE_RS21475 fdea056dd1c569a0761f9f66a5f16bd8 268 Pfam PF08666 SAF domain 47 113 3.6E-7 T 23-04-2016 IPR013974 SAF domain RPE_RS21475 fdea056dd1c569a0761f9f66a5f16bd8 268 TIGRFAM TIGR03177 pilus_cpaB: Flp pilus assembly protein CpaB 6 245 2.5E-75 T 23-04-2016 IPR017592 Pilus assembly, Flp-type CpaB RPE_RS21475 fdea056dd1c569a0761f9f66a5f16bd8 268 Pfam PF16976 Flp pilus assembly protein RcpC/CpaB 120 231 2.4E-32 T 23-04-2016 IPR031571 Flp pilus assembly protein RcpC/CpaB domain RPE_RS21475 fdea056dd1c569a0761f9f66a5f16bd8 268 SMART SM00858 46 114 1.9E-10 T 23-04-2016 IPR013974 SAF domain RPE_RS15885 5aaa8f48f521b8edca361efa19816773 785 Gene3D G3DSA:3.20.20.210 417 784 3.7E-132 T 23-04-2016 RPE_RS15885 5aaa8f48f521b8edca361efa19816773 785 SUPERFAMILY SSF51726 421 781 1.44E-118 T 23-04-2016 RPE_RS15885 5aaa8f48f521b8edca361efa19816773 785 PANTHER PTHR30519:SF0 130 785 0.0 T 23-04-2016 RPE_RS15885 5aaa8f48f521b8edca361efa19816773 785 PANTHER PTHR30519:SF0 9 112 0.0 T 23-04-2016 RPE_RS15885 5aaa8f48f521b8edca361efa19816773 785 PANTHER PTHR30519 130 785 0.0 T 23-04-2016 RPE_RS15885 5aaa8f48f521b8edca361efa19816773 785 PANTHER PTHR30519 9 112 0.0 T 23-04-2016 RPE_RS15885 5aaa8f48f521b8edca361efa19816773 785 PIRSF PIRSF000382 8 785 0.0 T 23-04-2016 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 RPE_RS15885 5aaa8f48f521b8edca361efa19816773 785 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 11 783 36.552 T 23-04-2016 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 RPE_RS15885 5aaa8f48f521b8edca361efa19816773 785 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 16 782 0.0 T 23-04-2016 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 RPE_RS15885 5aaa8f48f521b8edca361efa19816773 785 SUPERFAMILY SSF51726 15 419 5.1E-111 T 23-04-2016 RPE_RS15885 5aaa8f48f521b8edca361efa19816773 785 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 456 778 1.2E-151 T 23-04-2016 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 RPE_RS15885 5aaa8f48f521b8edca361efa19816773 785 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 14 337 1.8E-113 T 23-04-2016 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 RPE_RS15885 5aaa8f48f521b8edca361efa19816773 785 Gene3D G3DSA:3.20.20.210 15 414 9.9E-145 T 23-04-2016 RPE_RS17635 b83151aaf6a0eebb8ea21a29a141ab00 115 Pfam PF16518 T3SS negative regulator,GrlR 1 73 5.1E-11 T 23-04-2016 IPR032417 T3SS negative regulator GrlR RPE_RS16200 b21b9c1b320bc51ccceaa04c9ffa7a50 91 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 10 49 3.5E-12 T 23-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 RPE_RS16200 b21b9c1b320bc51ccceaa04c9ffa7a50 91 SMART SM00966 9 54 1.3E-7 T 23-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 RPE_RS16200 b21b9c1b320bc51ccceaa04c9ffa7a50 91 SUPERFAMILY SSF89447 8 49 2.79E-7 T 23-04-2016 RPE_RS16200 b21b9c1b320bc51ccceaa04c9ffa7a50 91 Gene3D G3DSA:2.10.260.10 11 48 6.5E-5 T 23-04-2016 RPE_RS19080 47106d8ccca40757b783f9b15ecfce3b 427 Pfam PF03600 Citrate transporter 15 366 3.6E-33 T 23-04-2016 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 RPE_RS19080 47106d8ccca40757b783f9b15ecfce3b 427 PANTHER PTHR10283 2 425 6.0E-155 T 23-04-2016 RPE_RS19080 47106d8ccca40757b783f9b15ecfce3b 427 PANTHER PTHR10283:SF103 2 425 6.0E-155 T 23-04-2016 RPE_RS17045 f1a9b478bf8f2900e7b766984c604659 213 PIRSF PIRSF006755 1 212 2.2E-49 T 23-04-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380|UniPathway: UPA00078 RPE_RS17045 f1a9b478bf8f2900e7b766984c604659 213 SUPERFAMILY SSF52540 1 193 5.61E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS17045 f1a9b478bf8f2900e7b766984c604659 213 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 7 157 1.2E-33 T 23-04-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380|UniPathway: UPA00078 RPE_RS17045 f1a9b478bf8f2900e7b766984c604659 213 PANTHER PTHR21343 1 196 8.4E-48 T 23-04-2016 RPE_RS17045 f1a9b478bf8f2900e7b766984c604659 213 Pfam PF13500 AAA domain 4 191 9.4E-49 T 23-04-2016 RPE_RS17045 f1a9b478bf8f2900e7b766984c604659 213 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 2 203 25.031 T 23-04-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380|UniPathway: UPA00078 RPE_RS17045 f1a9b478bf8f2900e7b766984c604659 213 Gene3D G3DSA:3.40.50.300 2 195 1.7E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS17045 f1a9b478bf8f2900e7b766984c604659 213 PANTHER PTHR21343:SF0 1 196 8.4E-48 T 23-04-2016 RPE_RS10730 dbe14c5545036e118ad82caa5d5cbc0a 174 Pfam PF13279 Thioesterase-like superfamily 26 145 8.5E-20 T 23-04-2016 RPE_RS10730 dbe14c5545036e118ad82caa5d5cbc0a 174 PANTHER PTHR31793 23 161 9.1E-71 T 23-04-2016 RPE_RS10730 dbe14c5545036e118ad82caa5d5cbc0a 174 SUPERFAMILY SSF54637 23 169 5.93E-45 T 23-04-2016 IPR029069 HotDog domain RPE_RS10730 dbe14c5545036e118ad82caa5d5cbc0a 174 Gene3D G3DSA:3.10.129.10 19 153 8.6E-49 T 23-04-2016 IPR029069 HotDog domain RPE_RS10730 dbe14c5545036e118ad82caa5d5cbc0a 174 PANTHER PTHR31793:SF2 23 161 9.1E-71 T 23-04-2016 RPE_RS15080 40ee8177489ab3c535312808a2c9cd16 565 Pfam PF04773 FecR protein 56 137 2.2E-7 T 23-04-2016 IPR006860 FecR protein RPE_RS15080 40ee8177489ab3c535312808a2c9cd16 565 SUPERFAMILY SSF56925 406 563 2.35E-12 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RPE_RS04820 0c4b6282375a73911a494ab8ad71f3b8 173 PANTHER PTHR11995 43 168 4.9E-64 T 23-04-2016 RPE_RS04820 0c4b6282375a73911a494ab8ad71f3b8 173 Gene3D G3DSA:3.40.50.700 44 168 3.5E-33 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 RPE_RS04820 0c4b6282375a73911a494ab8ad71f3b8 173 SUPERFAMILY SSF56770 42 168 1.57E-54 T 23-04-2016 RPE_RS04820 0c4b6282375a73911a494ab8ad71f3b8 173 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 55 166 9.8E-29 T 23-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 RPE_RS04820 0c4b6282375a73911a494ab8ad71f3b8 173 PANTHER PTHR11995:SF3 43 168 4.9E-64 T 23-04-2016 RPE_RS18540 4bf9cac8d73423fba91bb08d67d997fa 466 Pfam PF01425 Amidase 26 446 1.3E-81 T 23-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RPE_RS18540 4bf9cac8d73423fba91bb08d67d997fa 466 PANTHER PTHR11895:SF84 1 462 9.5E-228 T 23-04-2016 RPE_RS18540 4bf9cac8d73423fba91bb08d67d997fa 466 ProSitePatterns PS00571 Amidases signature. 153 184 - T 23-04-2016 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RPE_RS18540 4bf9cac8d73423fba91bb08d67d997fa 466 Gene3D G3DSA:3.90.1300.10 1 454 2.7E-109 T 23-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RPE_RS18540 4bf9cac8d73423fba91bb08d67d997fa 466 SUPERFAMILY SSF75304 1 454 2.35E-114 T 23-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RPE_RS18540 4bf9cac8d73423fba91bb08d67d997fa 466 PANTHER PTHR11895 1 462 9.5E-228 T 23-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RPE_RS01485 58744d57e5538c95d4c02ba0f72d00d6 435 Pfam PF00364 Biotin-requiring enzyme 3 75 1.5E-22 T 23-04-2016 IPR000089 Biotin/lipoyl attachment RPE_RS01485 58744d57e5538c95d4c02ba0f72d00d6 435 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 26 55 - T 23-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site RPE_RS01485 58744d57e5538c95d4c02ba0f72d00d6 435 Gene3D G3DSA:2.40.50.100 1 92 4.8E-30 T 23-04-2016 RPE_RS01485 58744d57e5538c95d4c02ba0f72d00d6 435 PANTHER PTHR23151 1 435 7.2E-227 T 23-04-2016 RPE_RS01485 58744d57e5538c95d4c02ba0f72d00d6 435 SUPERFAMILY SSF52777 205 434 8.45E-89 T 23-04-2016 RPE_RS01485 58744d57e5538c95d4c02ba0f72d00d6 435 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 205 432 3.0E-80 T 23-04-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 RPE_RS01485 58744d57e5538c95d4c02ba0f72d00d6 435 PANTHER PTHR23151:SF47 1 435 7.2E-227 T 23-04-2016 RPE_RS01485 58744d57e5538c95d4c02ba0f72d00d6 435 Pfam PF02817 e3 binding domain 138 172 2.8E-11 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RPE_RS01485 58744d57e5538c95d4c02ba0f72d00d6 435 Gene3D G3DSA:4.10.320.10 135 184 3.3E-16 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RPE_RS01485 58744d57e5538c95d4c02ba0f72d00d6 435 SUPERFAMILY SSF47005 134 176 1.12E-9 T 23-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RPE_RS01485 58744d57e5538c95d4c02ba0f72d00d6 435 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 3 434 2.1E-169 T 23-04-2016 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|UniPathway: UPA00868 RPE_RS01485 58744d57e5538c95d4c02ba0f72d00d6 435 Gene3D G3DSA:3.30.559.10 196 433 1.0E-90 T 23-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain RPE_RS01485 58744d57e5538c95d4c02ba0f72d00d6 435 SUPERFAMILY SSF51230 2 91 1.7E-27 T 23-04-2016 IPR011053 Single hybrid motif RPE_RS12380 3a11e3e39430b21b0a7b2647f97fbc02 303 SMART SM00382 63 211 6.8E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS12380 3a11e3e39430b21b0a7b2647f97fbc02 303 PANTHER PTHR23077:SF10 14 292 6.6E-37 T 23-04-2016 RPE_RS12380 3a11e3e39430b21b0a7b2647f97fbc02 303 PANTHER PTHR23077 14 292 6.6E-37 T 23-04-2016 RPE_RS12380 3a11e3e39430b21b0a7b2647f97fbc02 303 SUPERFAMILY SSF52540 26 288 7.44E-34 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12380 3a11e3e39430b21b0a7b2647f97fbc02 303 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 67 210 1.7E-22 T 23-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RPE_RS12380 3a11e3e39430b21b0a7b2647f97fbc02 303 Gene3D G3DSA:3.40.50.300 28 225 1.7E-31 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12380 3a11e3e39430b21b0a7b2647f97fbc02 303 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 139 157 1.9E-5 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 RPE_RS12380 3a11e3e39430b21b0a7b2647f97fbc02 303 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 67 85 1.9E-5 T 23-04-2016 IPR001270 ClpA/B family GO:0005524 RPE_RS05850 04832538ef154060b5e30d01eda06b21 358 PANTHER PTHR30531 6 355 3.1E-102 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RPE_RS05850 04832538ef154060b5e30d01eda06b21 358 Gene3D G3DSA:3.40.1690.10 220 355 2.1E-53 T 23-04-2016 IPR029025 Type III secretion system substrate exporter, C-terminal RPE_RS05850 04832538ef154060b5e30d01eda06b21 358 PANTHER PTHR30531:SF0 6 355 3.1E-102 T 23-04-2016 RPE_RS05850 04832538ef154060b5e30d01eda06b21 358 Pfam PF01312 FlhB HrpN YscU SpaS Family 8 348 3.4E-107 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RPE_RS05850 04832538ef154060b5e30d01eda06b21 358 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 8 355 2.4E-108 T 23-04-2016 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 RPE_RS05850 04832538ef154060b5e30d01eda06b21 358 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 210 228 5.2E-39 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RPE_RS05850 04832538ef154060b5e30d01eda06b21 358 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 230 247 5.2E-39 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RPE_RS05850 04832538ef154060b5e30d01eda06b21 358 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 274 289 5.2E-39 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RPE_RS05850 04832538ef154060b5e30d01eda06b21 358 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 11 33 5.2E-39 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RPE_RS05850 04832538ef154060b5e30d01eda06b21 358 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 304 325 5.2E-39 T 23-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RPE_RS05850 04832538ef154060b5e30d01eda06b21 358 SUPERFAMILY SSF160544 247 352 2.88E-36 T 23-04-2016 IPR029025 Type III secretion system substrate exporter, C-terminal RPE_RS24385 cf898c2e8ae039d366290d88c0009125 254 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 72 207 9.3E-7 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain RPE_RS24385 cf898c2e8ae039d366290d88c0009125 254 Gene3D G3DSA:3.40.50.1110 57 239 2.0E-16 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain RPE_RS24385 cf898c2e8ae039d366290d88c0009125 254 SUPERFAMILY SSF52266 56 213 6.23E-19 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain RPE_RS24060 3df1702562e473822ccc7117c2cb62a5 318 Pfam PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain 41 139 3.6E-10 T 23-04-2016 IPR015375 NADH pyrophosphatase-like, N-terminal GO:0016787 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381 RPE_RS24060 3df1702562e473822ccc7117c2cb62a5 318 Pfam PF00293 NUDIX domain 179 285 3.0E-15 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RPE_RS24060 3df1702562e473822ccc7117c2cb62a5 318 PANTHER PTHR22769:SF7 133 317 2.2E-77 T 23-04-2016 RPE_RS24060 3df1702562e473822ccc7117c2cb62a5 318 PANTHER PTHR22769 133 317 2.2E-77 T 23-04-2016 RPE_RS24060 3df1702562e473822ccc7117c2cb62a5 318 ProSitePatterns PS00893 Nudix box signature. 211 232 - T 23-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RPE_RS24060 3df1702562e473822ccc7117c2cb62a5 318 Gene3D G3DSA:3.90.79.10 131 312 1.0E-47 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS24060 3df1702562e473822ccc7117c2cb62a5 318 SUPERFAMILY SSF55811 125 309 8.12E-45 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS24060 3df1702562e473822ccc7117c2cb62a5 318 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 142 172 1.4E-10 T 23-04-2016 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381 RPE_RS07360 88171fee32c6012ad5783a66a6a8e7e5 81 SUPERFAMILY SSF54909 3 77 7.78E-16 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RPE_RS07360 88171fee32c6012ad5783a66a6a8e7e5 81 Gene3D G3DSA:3.30.70.920 5 77 2.6E-21 T 23-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RPE_RS07360 88171fee32c6012ad5783a66a6a8e7e5 81 PANTHER PTHR30154 1 78 1.3E-13 T 23-04-2016 RPE_RS07360 88171fee32c6012ad5783a66a6a8e7e5 81 Pfam PF01037 Lrp/AsnC ligand binding domain 9 76 1.6E-12 T 23-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RPE_RS07360 88171fee32c6012ad5783a66a6a8e7e5 81 PANTHER PTHR30154:SF12 1 78 1.3E-13 T 23-04-2016 RPE_RS02200 52246be20f122147c2a4dfaa2b2bff03 293 PANTHER PTHR32243 4 292 6.7E-105 T 23-04-2016 RPE_RS02200 52246be20f122147c2a4dfaa2b2bff03 293 PANTHER PTHR32243:SF13 4 292 6.7E-105 T 23-04-2016 RPE_RS02200 52246be20f122147c2a4dfaa2b2bff03 293 Gene3D G3DSA:1.10.3720.10 61 290 2.3E-52 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS02200 52246be20f122147c2a4dfaa2b2bff03 293 SUPERFAMILY SSF161098 55 281 5.49E-52 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS02200 52246be20f122147c2a4dfaa2b2bff03 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 98 292 2.8E-14 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS17015 5d35439de248620c3de1c93e24f06805 155 Pfam PF01980 Uncharacterised protein family UPF0066 39 144 5.6E-25 T 23-04-2016 IPR023370 TsaA-like domain RPE_RS17015 5d35439de248620c3de1c93e24f06805 155 Gene3D G3DSA:2.40.30.70 26 145 5.3E-36 T 23-04-2016 IPR023370 TsaA-like domain RPE_RS17015 5d35439de248620c3de1c93e24f06805 155 SUPERFAMILY SSF118196 24 146 1.7E-39 T 23-04-2016 IPR023370 TsaA-like domain RPE_RS17015 5d35439de248620c3de1c93e24f06805 155 PANTHER PTHR12818 27 144 2.4E-33 T 23-04-2016 RPE_RS17015 5d35439de248620c3de1c93e24f06805 155 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 26 144 8.6E-30 T 23-04-2016 IPR023370 TsaA-like domain RPE_RS21615 fb059fb465a4b3ba69b63efd38b8cc4b 280 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 73 277 1.4E-67 T 23-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RPE_RS21615 fb059fb465a4b3ba69b63efd38b8cc4b 280 Gene3D G3DSA:3.90.850.10 66 279 1.8E-83 T 23-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RPE_RS21615 fb059fb465a4b3ba69b63efd38b8cc4b 280 PANTHER PTHR11820:SF71 1 279 1.5E-162 T 23-04-2016 RPE_RS21615 fb059fb465a4b3ba69b63efd38b8cc4b 280 PANTHER PTHR11820 1 279 1.5E-162 T 23-04-2016 RPE_RS21615 fb059fb465a4b3ba69b63efd38b8cc4b 280 SUPERFAMILY SSF56529 62 279 8.9E-80 T 23-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 RPE_RS17035 582c4a9484ce6d1dca2fc1ecb5c4c962 319 PANTHER PTHR21666 41 248 5.5E-43 T 23-04-2016 RPE_RS17035 582c4a9484ce6d1dca2fc1ecb5c4c962 319 Gene3D G3DSA:1.10.530.10 61 180 2.2E-31 T 23-04-2016 RPE_RS17035 582c4a9484ce6d1dca2fc1ecb5c4c962 319 Pfam PF05036 Sporulation related domain 232 314 4.6E-9 T 23-04-2016 IPR007730 Sporulation-related domain GO:0042834 RPE_RS17035 582c4a9484ce6d1dca2fc1ecb5c4c962 319 PANTHER PTHR21666:SF203 41 248 5.5E-43 T 23-04-2016 RPE_RS17035 582c4a9484ce6d1dca2fc1ecb5c4c962 319 SUPERFAMILY SSF53955 49 179 1.34E-31 T 23-04-2016 IPR023346 Lysozyme-like domain RPE_RS17035 582c4a9484ce6d1dca2fc1ecb5c4c962 319 Pfam PF01464 Transglycosylase SLT domain 62 169 4.4E-19 T 23-04-2016 IPR008258 Transglycosylase SLT domain 1 RPE_RS17035 582c4a9484ce6d1dca2fc1ecb5c4c962 319 Gene3D G3DSA:3.30.70.1070 232 315 3.2E-4 T 23-04-2016 IPR007730 Sporulation-related domain GO:0042834 RPE_RS24575 67ca9ceaf5dfb1486e5300fdaa90a0f3 251 PANTHER PTHR33619:SF2 1 243 1.6E-61 T 23-04-2016 RPE_RS24575 67ca9ceaf5dfb1486e5300fdaa90a0f3 251 Pfam PF10531 SLBB domain 179 226 3.6E-9 T 23-04-2016 IPR019554 Soluble ligand binding domain RPE_RS24575 67ca9ceaf5dfb1486e5300fdaa90a0f3 251 Pfam PF02563 Polysaccharide biosynthesis/export protein 99 172 5.7E-17 T 23-04-2016 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 RPE_RS24575 67ca9ceaf5dfb1486e5300fdaa90a0f3 251 PANTHER PTHR33619 1 243 1.6E-61 T 23-04-2016 RPE_RS24575 67ca9ceaf5dfb1486e5300fdaa90a0f3 251 Gene3D G3DSA:3.30.1950.10 107 168 2.3E-16 T 23-04-2016 RPE_RS24575 67ca9ceaf5dfb1486e5300fdaa90a0f3 251 Gene3D G3DSA:3.10.560.10 169 227 9.2E-11 T 23-04-2016 RPE_RS04055 dd7daa213d880cb36b5df5e703ee2f73 763 SUPERFAMILY SSF52540 571 746 2.16E-24 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS04055 dd7daa213d880cb36b5df5e703ee2f73 763 PANTHER PTHR32309:SF13 16 477 1.8E-66 T 23-04-2016 RPE_RS04055 dd7daa213d880cb36b5df5e703ee2f73 763 PANTHER PTHR32309:SF13 535 707 1.8E-66 T 23-04-2016 RPE_RS04055 dd7daa213d880cb36b5df5e703ee2f73 763 Pfam PF02706 Chain length determinant protein 16 178 2.7E-5 T 23-04-2016 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 RPE_RS04055 dd7daa213d880cb36b5df5e703ee2f73 763 Gene3D G3DSA:3.40.50.300 568 743 1.4E-21 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS04055 dd7daa213d880cb36b5df5e703ee2f73 763 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 582 745 1.1E-7 T 23-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain RPE_RS04055 dd7daa213d880cb36b5df5e703ee2f73 763 PANTHER PTHR32309 16 477 1.8E-66 T 23-04-2016 RPE_RS04055 dd7daa213d880cb36b5df5e703ee2f73 763 PANTHER PTHR32309 535 707 1.8E-66 T 23-04-2016 RPE_RS20440 c76d74664ad567ba46a937dc51549851 370 Gene3D G3DSA:3.30.1490.20 125 188 7.4E-23 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RPE_RS20440 c76d74664ad567ba46a937dc51549851 370 Pfam PF02222 ATP-grasp domain 119 291 7.4E-58 T 23-04-2016 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type UniPathway: UPA00074 RPE_RS20440 c76d74664ad567ba46a937dc51549851 370 SUPERFAMILY SSF52440 9 107 2.01E-23 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RPE_RS20440 c76d74664ad567ba46a937dc51549851 370 PANTHER PTHR11609 5 362 3.8E-136 T 23-04-2016 RPE_RS20440 c76d74664ad567ba46a937dc51549851 370 Gene3D G3DSA:3.40.50.20 10 117 1.9E-29 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RPE_RS20440 c76d74664ad567ba46a937dc51549851 370 PANTHER PTHR11609:SF5 5 362 3.8E-136 T 23-04-2016 RPE_RS20440 c76d74664ad567ba46a937dc51549851 370 SUPERFAMILY SSF56059 110 311 2.3E-66 T 23-04-2016 RPE_RS20440 c76d74664ad567ba46a937dc51549851 370 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 14 365 42.658 T 23-04-2016 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 RPE_RS20440 c76d74664ad567ba46a937dc51549851 370 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 14 363 7.2E-116 T 23-04-2016 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 RPE_RS20440 c76d74664ad567ba46a937dc51549851 370 SUPERFAMILY SSF51246 315 366 2.83E-15 T 23-04-2016 IPR011054 Rudiment single hybrid motif RPE_RS20440 c76d74664ad567ba46a937dc51549851 370 Gene3D G3DSA:3.30.470.20 189 363 4.8E-68 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RPE_RS01475 341d2e9d9cbfa753b83a7b3d864337b9 103 SUPERFAMILY SSF143880 3 87 8.11E-22 T 23-04-2016 IPR018841 Protein of unknown function DUF2442 RPE_RS01475 341d2e9d9cbfa753b83a7b3d864337b9 103 Pfam PF10387 Protein of unknown function (DUF2442) 12 78 7.7E-13 T 23-04-2016 IPR018841 Protein of unknown function DUF2442 RPE_RS01475 341d2e9d9cbfa753b83a7b3d864337b9 103 Gene3D G3DSA:3.30.2020.10 4 86 1.1E-15 T 23-04-2016 IPR018841 Protein of unknown function DUF2442 RPE_RS06405 cad831169aefa1282ac6d1382ac1e586 194 PANTHER PTHR26402:SF567 5 181 2.2E-65 T 23-04-2016 RPE_RS06405 cad831169aefa1282ac6d1382ac1e586 194 PIRSF PIRSF036382 1 194 2.4E-60 T 23-04-2016 IPR008327 Signal transduction response regulator, antiterminator RPE_RS06405 cad831169aefa1282ac6d1382ac1e586 194 SUPERFAMILY SSF52172 5 187 2.85E-44 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS06405 cad831169aefa1282ac6d1382ac1e586 194 Pfam PF03861 ANTAR domain 135 187 1.1E-18 T 23-04-2016 IPR005561 ANTAR domain GO:0003723 RPE_RS06405 cad831169aefa1282ac6d1382ac1e586 194 Gene3D G3DSA:1.10.10.10 136 193 3.0E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS06405 cad831169aefa1282ac6d1382ac1e586 194 Gene3D G3DSA:3.40.50.2300 4 124 4.6E-12 T 23-04-2016 RPE_RS06405 cad831169aefa1282ac6d1382ac1e586 194 Pfam PF00072 Response regulator receiver domain 7 115 1.6E-7 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS06405 cad831169aefa1282ac6d1382ac1e586 194 PANTHER PTHR26402 5 181 2.2E-65 T 23-04-2016 RPE_RS06405 cad831169aefa1282ac6d1382ac1e586 194 SMART SM01012 132 187 4.7E-22 T 23-04-2016 IPR005561 ANTAR domain GO:0003723 RPE_RS22540 782062bb7143bcd477c7fd307b0063f2 184 SUPERFAMILY SSF52833 1 182 4.77E-44 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS22540 782062bb7143bcd477c7fd307b0063f2 184 PIRSF PIRSF000239 1 184 2.3E-38 T 23-04-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15 RPE_RS22540 782062bb7143bcd477c7fd307b0063f2 184 Pfam PF00578 AhpC/TSA family 14 142 5.4E-24 T 23-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 RPE_RS22540 782062bb7143bcd477c7fd307b0063f2 184 PANTHER PTHR10681 11 182 6.5E-81 T 23-04-2016 RPE_RS22540 782062bb7143bcd477c7fd307b0063f2 184 Gene3D G3DSA:3.40.30.10 4 182 5.0E-49 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS22540 782062bb7143bcd477c7fd307b0063f2 184 PANTHER PTHR10681:SF87 11 182 6.5E-81 T 23-04-2016 RPE_RS22145 6dfdf6cd38c918566267f20c1d026d9f 106 Pfam PF01381 Helix-turn-helix 24 75 5.3E-10 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RPE_RS22145 6dfdf6cd38c918566267f20c1d026d9f 106 SMART SM00530 23 78 7.6E-7 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RPE_RS22145 6dfdf6cd38c918566267f20c1d026d9f 106 PANTHER PTHR36924:SF1 10 102 3.1E-33 T 23-04-2016 RPE_RS22145 6dfdf6cd38c918566267f20c1d026d9f 106 SUPERFAMILY SSF47413 18 101 1.02E-25 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS22145 6dfdf6cd38c918566267f20c1d026d9f 106 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 16 92 1.9E-29 T 23-04-2016 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 RPE_RS22145 6dfdf6cd38c918566267f20c1d026d9f 106 Gene3D G3DSA:1.10.260.40 14 102 6.2E-30 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS22145 6dfdf6cd38c918566267f20c1d026d9f 106 PANTHER PTHR36924 10 102 3.1E-33 T 23-04-2016 RPE_RS05125 590c4f7402bbc3b65dfc3b0f50714d3d 89 SUPERFAMILY SSF53335 17 75 4.57E-5 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS05125 590c4f7402bbc3b65dfc3b0f50714d3d 89 Gene3D G3DSA:3.40.50.150 17 73 9.0E-5 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS24400 7587d93301fe921cfce500fb3be41ae2 333 PANTHER PTHR30111 229 329 5.8E-61 T 23-04-2016 RPE_RS24400 7587d93301fe921cfce500fb3be41ae2 333 PANTHER PTHR30111 21 208 5.8E-61 T 23-04-2016 RPE_RS24400 7587d93301fe921cfce500fb3be41ae2 333 Pfam PF01430 Hsp33 protein 26 326 3.8E-74 T 23-04-2016 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 RPE_RS24400 7587d93301fe921cfce500fb3be41ae2 333 SUPERFAMILY SSF118352 279 329 3.14E-14 T 23-04-2016 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 RPE_RS24400 7587d93301fe921cfce500fb3be41ae2 333 PANTHER PTHR30111:SF1 229 329 5.8E-61 T 23-04-2016 RPE_RS24400 7587d93301fe921cfce500fb3be41ae2 333 PANTHER PTHR30111:SF1 21 208 5.8E-61 T 23-04-2016 RPE_RS24400 7587d93301fe921cfce500fb3be41ae2 333 SUPERFAMILY SSF64397 30 289 1.57E-61 T 23-04-2016 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 RPE_RS24400 7587d93301fe921cfce500fb3be41ae2 333 Gene3D G3DSA:3.90.1280.10 280 329 1.8E-17 T 23-04-2016 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 RPE_RS24400 7587d93301fe921cfce500fb3be41ae2 333 Gene3D G3DSA:3.55.30.10 25 279 8.8E-72 T 23-04-2016 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 RPE_RS24400 7587d93301fe921cfce500fb3be41ae2 333 PIRSF PIRSF005261 17 332 6.9E-70 T 23-04-2016 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 RPE_RS12885 0c0e519d72928568e7f54ae2896d9ac0 560 Gene3D G3DSA:2.40.240.10 467 551 4.5E-28 T 23-04-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: REACT_71 RPE_RS12885 0c0e519d72928568e7f54ae2896d9ac0 560 PANTHER PTHR11451:SF29 13 251 7.1E-215 T 23-04-2016 RPE_RS12885 0c0e519d72928568e7f54ae2896d9ac0 560 PANTHER PTHR11451:SF29 271 556 7.1E-215 T 23-04-2016 RPE_RS12885 0c0e519d72928568e7f54ae2896d9ac0 560 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 344 533 2.4E-57 T 23-04-2016 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: REACT_71 RPE_RS12885 0c0e519d72928568e7f54ae2896d9ac0 560 Gene3D G3DSA:2.40.240.10 352 466 1.7E-50 T 23-04-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: REACT_71 RPE_RS12885 0c0e519d72928568e7f54ae2896d9ac0 560 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 31 341 7.3E-102 T 23-04-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 RPE_RS12885 0c0e519d72928568e7f54ae2896d9ac0 560 Gene3D G3DSA:3.40.50.620 31 100 1.1E-41 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS12885 0c0e519d72928568e7f54ae2896d9ac0 560 Gene3D G3DSA:3.40.50.620 216 266 1.1E-41 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS12885 0c0e519d72928568e7f54ae2896d9ac0 560 SUPERFAMILY SSF50715 344 551 7.32E-69 T 23-04-2016 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: REACT_71 RPE_RS12885 0c0e519d72928568e7f54ae2896d9ac0 560 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 33 555 3.7E-216 T 23-04-2016 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18 RPE_RS12885 0c0e519d72928568e7f54ae2896d9ac0 560 Gene3D G3DSA:1.10.1160.10 267 343 2.1E-33 T 23-04-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: REACT_71 RPE_RS12885 0c0e519d72928568e7f54ae2896d9ac0 560 Gene3D G3DSA:3.90.800.10 105 213 2.1E-43 T 23-04-2016 RPE_RS12885 0c0e519d72928568e7f54ae2896d9ac0 560 PRINTS PR00987 Glutamyl-tRNA synthetase signature 214 224 2.0E-8 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RPE_RS12885 0c0e519d72928568e7f54ae2896d9ac0 560 PRINTS PR00987 Glutamyl-tRNA synthetase signature 64 77 2.0E-8 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RPE_RS12885 0c0e519d72928568e7f54ae2896d9ac0 560 PRINTS PR00987 Glutamyl-tRNA synthetase signature 49 60 2.0E-8 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RPE_RS12885 0c0e519d72928568e7f54ae2896d9ac0 560 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 47 2.0E-8 T 23-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RPE_RS12885 0c0e519d72928568e7f54ae2896d9ac0 560 SUPERFAMILY SSF52374 16 341 1.69E-96 T 23-04-2016 RPE_RS12885 0c0e519d72928568e7f54ae2896d9ac0 560 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 1 553 52.331 T 23-04-2016 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 RPE_RS12885 0c0e519d72928568e7f54ae2896d9ac0 560 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 38 49 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS12885 0c0e519d72928568e7f54ae2896d9ac0 560 PANTHER PTHR11451 13 251 7.1E-215 T 23-04-2016 RPE_RS12885 0c0e519d72928568e7f54ae2896d9ac0 560 PANTHER PTHR11451 271 556 7.1E-215 T 23-04-2016 RPE_RS19010 24152efd86a6fff0bd14b506a38c7a52 148 Pfam PF13279 Thioesterase-like superfamily 11 135 8.9E-10 T 23-04-2016 RPE_RS19010 24152efd86a6fff0bd14b506a38c7a52 148 SUPERFAMILY SSF54637 2 138 2.75E-29 T 23-04-2016 IPR029069 HotDog domain RPE_RS19010 24152efd86a6fff0bd14b506a38c7a52 148 Gene3D G3DSA:3.10.129.10 3 138 2.2E-32 T 23-04-2016 IPR029069 HotDog domain RPE_RS10620 7a33945fca3f923d34404109d350df4c 598 TIGRFAM TIGR03483 FtsZ_alphas_C: cell division protein FtsZ, alphaProteobacterial C-terminal extension 468 597 1.6E-32 T 23-04-2016 IPR017844 Cell division protein FtsZ, C-terminal extension GO:0000910|GO:0005525|GO:0005737 RPE_RS10620 7a33945fca3f923d34404109d350df4c 598 PRINTS PR00423 Cell division protein FtsZ signature 129 150 1.4E-48 T 23-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RPE_RS10620 7a33945fca3f923d34404109d350df4c 598 PRINTS PR00423 Cell division protein FtsZ signature 215 236 1.4E-48 T 23-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RPE_RS10620 7a33945fca3f923d34404109d350df4c 598 PRINTS PR00423 Cell division protein FtsZ signature 192 214 1.4E-48 T 23-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RPE_RS10620 7a33945fca3f923d34404109d350df4c 598 PRINTS PR00423 Cell division protein FtsZ signature 101 121 1.4E-48 T 23-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RPE_RS10620 7a33945fca3f923d34404109d350df4c 598 ProSitePatterns PS01134 FtsZ protein signature 1. 47 81 - T 23-04-2016 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 RPE_RS10620 7a33945fca3f923d34404109d350df4c 598 ProSitePatterns PS01135 FtsZ protein signature 2. 100 121 - T 23-04-2016 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 RPE_RS10620 7a33945fca3f923d34404109d350df4c 598 SMART SM00864 16 208 9.4E-107 T 23-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RPE_RS10620 7a33945fca3f923d34404109d350df4c 598 PANTHER PTHR30314 1 321 7.4E-171 T 23-04-2016 RPE_RS10620 7a33945fca3f923d34404109d350df4c 598 Gene3D G3DSA:3.30.1330.20 218 322 7.3E-48 T 23-04-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain RPE_RS10620 7a33945fca3f923d34404109d350df4c 598 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 14 324 7.0E-120 T 23-04-2016 IPR000158 Cell division protein FtsZ GO:0005525 RPE_RS10620 7a33945fca3f923d34404109d350df4c 598 Gene3D G3DSA:3.40.50.1440 16 217 3.8E-91 T 23-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RPE_RS10620 7a33945fca3f923d34404109d350df4c 598 PANTHER PTHR30314:SF3 1 321 7.4E-171 T 23-04-2016 RPE_RS10620 7a33945fca3f923d34404109d350df4c 598 Pfam PF12327 FtsZ family, C-terminal domain 225 320 1.2E-36 T 23-04-2016 IPR024757 Cell division protein FtsZ, C-terminal RPE_RS10620 7a33945fca3f923d34404109d350df4c 598 SUPERFAMILY SSF52490 15 211 1.96E-69 T 23-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RPE_RS10620 7a33945fca3f923d34404109d350df4c 598 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 16 177 9.3E-40 T 23-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RPE_RS10620 7a33945fca3f923d34404109d350df4c 598 SUPERFAMILY SSF55307 208 321 3.89E-41 T 23-04-2016 IPR008280 Tubulin/FtsZ, C-terminal RPE_RS10620 7a33945fca3f923d34404109d350df4c 598 SMART SM00865 210 328 1.3E-56 T 23-04-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain RPE_RS10620 7a33945fca3f923d34404109d350df4c 598 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 12 366 37.062 T 23-04-2016 IPR000158 Cell division protein FtsZ GO:0005525 RPE_RS24095 a349ced8e12f01d616adea741a9ee537 187 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 20 182 1.0E-40 T 23-04-2016 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|UniPathway: UPA00070 RPE_RS24095 a349ced8e12f01d616adea741a9ee537 187 Pfam PF00156 Phosphoribosyl transferase domain 46 165 9.2E-13 T 23-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 RPE_RS24095 a349ced8e12f01d616adea741a9ee537 187 PANTHER PTHR19278 3 186 1.6E-53 T 23-04-2016 RPE_RS24095 a349ced8e12f01d616adea741a9ee537 187 SUPERFAMILY SSF53271 13 184 4.59E-36 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RPE_RS24095 a349ced8e12f01d616adea741a9ee537 187 Gene3D G3DSA:3.40.50.2020 5 185 7.8E-49 T 23-04-2016 IPR029057 Phosphoribosyltransferase-like RPE_RS24095 a349ced8e12f01d616adea741a9ee537 187 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 187 26.251 T 23-04-2016 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|UniPathway: UPA00070 RPE_RS24030 eb0e5b0a28ae24758b4566a5dbd4e338 145 PANTHER PTHR33507:SF3 1 145 4.4E-42 T 23-04-2016 RPE_RS24030 eb0e5b0a28ae24758b4566a5dbd4e338 145 Pfam PF01957 NfeD-like C-terminal, partner-binding 12 143 8.1E-27 T 23-04-2016 IPR002810 NfeD-like, C-terminal domain RPE_RS24030 eb0e5b0a28ae24758b4566a5dbd4e338 145 PANTHER PTHR33507 1 145 4.4E-42 T 23-04-2016 RPE_RS24030 eb0e5b0a28ae24758b4566a5dbd4e338 145 Gene3D G3DSA:2.40.50.140 89 143 7.7E-10 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS23710 87e9b2fbf9963dc79f51431012a261f1 68 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 6 68 2.2E-24 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RPE_RS23710 87e9b2fbf9963dc79f51431012a261f1 68 SUPERFAMILY SSF47413 1 68 3.1E-20 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS23710 87e9b2fbf9963dc79f51431012a261f1 68 PANTHER PTHR37301 2 68 1.2E-34 T 23-04-2016 RPE_RS23710 87e9b2fbf9963dc79f51431012a261f1 68 Gene3D G3DSA:1.10.260.40 1 67 7.1E-16 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS23710 87e9b2fbf9963dc79f51431012a261f1 68 SMART SM00530 6 62 1.7E-5 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RPE_RS22985 d90ab1afc80cf09737403ecf05543ea2 308 PANTHER PTHR11795 19 307 1.8E-99 T 23-04-2016 RPE_RS22985 d90ab1afc80cf09737403ecf05543ea2 308 TIGRFAM TIGR03409 urea_trans_UrtB: urea ABC transporter, permease protein UrtB 16 307 9.3E-122 T 23-04-2016 IPR017779 ABC transporter, urea permease protein UrtB, bacterial-type RPE_RS22985 d90ab1afc80cf09737403ecf05543ea2 308 PANTHER PTHR11795:SF349 19 307 1.8E-99 T 23-04-2016 RPE_RS22985 d90ab1afc80cf09737403ecf05543ea2 308 Pfam PF02653 Branched-chain amino acid transport system / permease component 19 294 6.0E-50 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RPE_RS08840 0f7b7486b4a6c6a0cc32a902353ce742 288 Gene3D G3DSA:1.10.3720.10 25 278 1.7E-42 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS08840 0f7b7486b4a6c6a0cc32a902353ce742 288 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 25 279 1.6E-110 T 23-04-2016 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 RPE_RS08840 0f7b7486b4a6c6a0cc32a902353ce742 288 SUPERFAMILY SSF161098 23 273 1.28E-49 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS08840 0f7b7486b4a6c6a0cc32a902353ce742 288 PANTHER PTHR30406:SF1 24 288 5.6E-123 T 23-04-2016 RPE_RS08840 0f7b7486b4a6c6a0cc32a902353ce742 288 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 275 2.3E-12 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS08840 0f7b7486b4a6c6a0cc32a902353ce742 288 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 28 278 4.2E-87 T 23-04-2016 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 RPE_RS08840 0f7b7486b4a6c6a0cc32a902353ce742 288 PANTHER PTHR30406 24 288 5.6E-123 T 23-04-2016 RPE_RS10200 888a0d48984fe9070f47e98ae6d268c4 138 Gene3D G3DSA:3.40.250.10 5 131 1.1E-32 T 23-04-2016 IPR001763 Rhodanese-like domain RPE_RS10200 888a0d48984fe9070f47e98ae6d268c4 138 SUPERFAMILY SSF52821 9 131 1.57E-28 T 23-04-2016 IPR001763 Rhodanese-like domain RPE_RS10200 888a0d48984fe9070f47e98ae6d268c4 138 SMART SM00450 23 127 2.3E-14 T 23-04-2016 IPR001763 Rhodanese-like domain RPE_RS10200 888a0d48984fe9070f47e98ae6d268c4 138 Pfam PF00581 Rhodanese-like domain 25 123 2.4E-13 T 23-04-2016 IPR001763 Rhodanese-like domain RPE_RS19790 dea06e5c336ba770990328a81e53afb2 221 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 35 184 1.3E-52 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 RPE_RS19790 dea06e5c336ba770990328a81e53afb2 221 PANTHER PTHR10173 1 199 5.5E-98 T 23-04-2016 IPR028427 Peptide methionine sulfoxide reductase GO:0006979|GO:0016671|GO:0030091 RPE_RS19790 dea06e5c336ba770990328a81e53afb2 221 PANTHER PTHR10173:SF29 1 199 5.5E-98 T 23-04-2016 RPE_RS19790 dea06e5c336ba770990328a81e53afb2 221 Pfam PF01625 Peptide methionine sulfoxide reductase 35 187 2.0E-58 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 RPE_RS19790 dea06e5c336ba770990328a81e53afb2 221 Gene3D G3DSA:3.30.1060.10 13 187 6.4E-69 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 RPE_RS19790 dea06e5c336ba770990328a81e53afb2 221 SUPERFAMILY SSF55068 18 199 1.01E-68 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 RPE_RS19790 dea06e5c336ba770990328a81e53afb2 221 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 33 193 34.663 T 23-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 RPE_RS01065 5fd1824bdfe8dd17ed6688cd426e6429 188 PANTHER PTHR11178:SF1 1 185 1.6E-97 T 23-04-2016 IPR017065 NFU1 iron-sulfur cluster scaffold homologue GO:0016226 RPE_RS01065 5fd1824bdfe8dd17ed6688cd426e6429 188 SUPERFAMILY SSF117916 106 188 1.44E-26 T 23-04-2016 RPE_RS01065 5fd1824bdfe8dd17ed6688cd426e6429 188 PANTHER PTHR11178 1 185 1.6E-97 T 23-04-2016 RPE_RS01065 5fd1824bdfe8dd17ed6688cd426e6429 188 Pfam PF08712 Scaffold protein Nfu/NifU N terminal 3 88 6.3E-32 T 23-04-2016 IPR014824 Scaffold protein Nfu/NifU, N-terminal RPE_RS01065 5fd1824bdfe8dd17ed6688cd426e6429 188 Gene3D G3DSA:3.30.1370.70 1 90 3.2E-34 T 23-04-2016 IPR014824 Scaffold protein Nfu/NifU, N-terminal RPE_RS01065 5fd1824bdfe8dd17ed6688cd426e6429 188 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 128 185 2.0E-28 T 23-04-2016 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 RPE_RS01065 5fd1824bdfe8dd17ed6688cd426e6429 188 SUPERFAMILY SSF110836 1 90 9.29E-31 T 23-04-2016 IPR014824 Scaffold protein Nfu/NifU, N-terminal RPE_RS01065 5fd1824bdfe8dd17ed6688cd426e6429 188 Pfam PF01106 NifU-like domain 120 185 1.8E-27 T 23-04-2016 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 RPE_RS01065 5fd1824bdfe8dd17ed6688cd426e6429 188 PIRSF PIRSF036773 1 188 3.1E-73 T 23-04-2016 RPE_RS01065 5fd1824bdfe8dd17ed6688cd426e6429 188 SMART SM00932 3 88 9.6E-53 T 23-04-2016 IPR014824 Scaffold protein Nfu/NifU, N-terminal RPE_RS15800 3775c46b216055a047dc85a58fcb7335 779 PANTHER PTHR30069 73 719 8.4E-141 T 23-04-2016 RPE_RS15800 3775c46b216055a047dc85a58fcb7335 779 Gene3D G3DSA:2.40.170.20 202 776 6.5E-80 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RPE_RS15800 3775c46b216055a047dc85a58fcb7335 779 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 78 776 9.0E-148 T 23-04-2016 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 RPE_RS15800 3775c46b216055a047dc85a58fcb7335 779 PANTHER PTHR30069:SF2 73 719 8.4E-141 T 23-04-2016 RPE_RS15800 3775c46b216055a047dc85a58fcb7335 779 Pfam PF07715 TonB-dependent Receptor Plug Domain 91 197 4.5E-24 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RPE_RS15800 3775c46b216055a047dc85a58fcb7335 779 Pfam PF00593 TonB dependent receptor 495 773 1.6E-25 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RPE_RS15800 3775c46b216055a047dc85a58fcb7335 779 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 75 776 3.0E-195 T 23-04-2016 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 RPE_RS15800 3775c46b216055a047dc85a58fcb7335 779 SUPERFAMILY SSF56935 77 776 6.59E-100 T 23-04-2016 RPE_RS15800 3775c46b216055a047dc85a58fcb7335 779 Gene3D G3DSA:2.170.130.10 88 201 2.1E-36 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RPE_RS21320 17605aecce642bb4480a34b5c8abb6b6 182 Pfam PF04542 Sigma-70 region 2 25 92 1.8E-15 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS21320 17605aecce642bb4480a34b5c8abb6b6 182 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 21 179 1.2E-26 T 23-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS21320 17605aecce642bb4480a34b5c8abb6b6 182 Pfam PF08281 Sigma-70, region 4 123 172 7.7E-11 T 23-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS21320 17605aecce642bb4480a34b5c8abb6b6 182 Gene3D G3DSA:1.10.1740.10 4 117 3.5E-26 T 23-04-2016 RPE_RS21320 17605aecce642bb4480a34b5c8abb6b6 182 Gene3D G3DSA:1.10.10.10 119 180 7.2E-12 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS21320 17605aecce642bb4480a34b5c8abb6b6 182 SUPERFAMILY SSF88659 117 179 1.16E-10 T 23-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS21320 17605aecce642bb4480a34b5c8abb6b6 182 PANTHER PTHR30173:SF31 1 179 2.9E-53 T 23-04-2016 RPE_RS21320 17605aecce642bb4480a34b5c8abb6b6 182 SUPERFAMILY SSF88946 1 109 6.87E-25 T 23-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS21320 17605aecce642bb4480a34b5c8abb6b6 182 PANTHER PTHR30173 1 179 2.9E-53 T 23-04-2016 RPE_RS07135 9dc0013381f204d1e2d1d1686919bf01 448 Pfam PF00675 Insulinase (Peptidase family M16) 32 178 2.5E-28 T 23-04-2016 IPR011765 Peptidase M16, N-terminal RPE_RS07135 9dc0013381f204d1e2d1d1686919bf01 448 Pfam PF05193 Peptidase M16 inactive domain 186 371 1.1E-23 T 23-04-2016 IPR007863 Peptidase M16, C-terminal RPE_RS07135 9dc0013381f204d1e2d1d1686919bf01 448 Gene3D G3DSA:3.30.830.10 246 431 9.1E-26 T 23-04-2016 IPR011237 Peptidase M16 domain GO:0046872 RPE_RS07135 9dc0013381f204d1e2d1d1686919bf01 448 PANTHER PTHR11851 25 446 1.9E-104 T 23-04-2016 RPE_RS07135 9dc0013381f204d1e2d1d1686919bf01 448 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 53 76 - T 23-04-2016 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 RPE_RS07135 9dc0013381f204d1e2d1d1686919bf01 448 PANTHER PTHR11851:SF136 25 446 1.9E-104 T 23-04-2016 RPE_RS07135 9dc0013381f204d1e2d1d1686919bf01 448 SUPERFAMILY SSF63411 242 433 8.33E-34 T 23-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RPE_RS07135 9dc0013381f204d1e2d1d1686919bf01 448 SUPERFAMILY SSF63411 20 226 5.24E-62 T 23-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RPE_RS07135 9dc0013381f204d1e2d1d1686919bf01 448 Gene3D G3DSA:3.30.830.10 16 239 2.2E-59 T 23-04-2016 IPR011237 Peptidase M16 domain GO:0046872 RPE_RS09135 5b79aff8986070d79cb018f93be78c27 244 SUPERFAMILY SSF53167 62 177 2.09E-25 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RPE_RS09135 5b79aff8986070d79cb018f93be78c27 244 Gene3D G3DSA:3.40.50.1580 53 177 1.4E-23 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RPE_RS09135 5b79aff8986070d79cb018f93be78c27 244 TIGRFAM TIGR03468 HpnG: hopanoid-associated phosphorylase 18 229 1.6E-73 T 23-04-2016 IPR017831 Hopanoid-associated phosphorylase HpnG RPE_RS09135 5b79aff8986070d79cb018f93be78c27 244 Pfam PF01048 Phosphorylase superfamily 62 177 2.0E-18 T 23-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RPE_RS01925 b71d60dbe811f4ab3a18180b70e77a32 622 Pfam PF13932 GidA associated domain 399 607 6.4E-59 T 23-04-2016 IPR026904 GidA associated domain 3 RPE_RS01925 b71d60dbe811f4ab3a18180b70e77a32 622 PANTHER PTHR11806:SF0 1 618 0.0 T 23-04-2016 RPE_RS01925 b71d60dbe811f4ab3a18180b70e77a32 622 PANTHER PTHR11806 1 618 0.0 T 23-04-2016 RPE_RS01925 b71d60dbe811f4ab3a18180b70e77a32 622 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 270 284 - T 23-04-2016 IPR020595 MnmG-related, conserved site RPE_RS01925 b71d60dbe811f4ab3a18180b70e77a32 622 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 5 613 8.6E-236 T 23-04-2016 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 RPE_RS01925 b71d60dbe811f4ab3a18180b70e77a32 622 Pfam PF01134 Glucose inhibited division protein A 6 392 8.3E-160 T 23-04-2016 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 RPE_RS01925 b71d60dbe811f4ab3a18180b70e77a32 622 SUPERFAMILY SSF51905 2 64 2.57E-45 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS01925 b71d60dbe811f4ab3a18180b70e77a32 622 SUPERFAMILY SSF51905 95 258 2.57E-45 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS01925 b71d60dbe811f4ab3a18180b70e77a32 622 Gene3D G3DSA:3.50.50.60 4 171 5.0E-37 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS01925 b71d60dbe811f4ab3a18180b70e77a32 622 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 365 388 - T 23-04-2016 IPR020595 MnmG-related, conserved site RPE_RS01925 b71d60dbe811f4ab3a18180b70e77a32 622 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 149 158 2.0E-6 T 23-04-2016 RPE_RS01925 b71d60dbe811f4ab3a18180b70e77a32 622 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 2.0E-6 T 23-04-2016 RPE_RS01925 b71d60dbe811f4ab3a18180b70e77a32 622 SMART SM01228 539 609 1.4E-33 T 23-04-2016 RPE_RS01925 b71d60dbe811f4ab3a18180b70e77a32 622 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 3 616 40.272 T 23-04-2016 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 RPE_RS07630 a740dd69898e19219375b9d4fbf76d3d 305 PANTHER PTHR11624 1 301 2.9E-70 T 23-04-2016 IPR033247 Transketolase family RPE_RS07630 a740dd69898e19219375b9d4fbf76d3d 305 Pfam PF02780 Transketolase, C-terminal domain 177 299 6.2E-20 T 23-04-2016 IPR033248 Transketolase, C-terminal domain RPE_RS07630 a740dd69898e19219375b9d4fbf76d3d 305 SUPERFAMILY SSF52518 1 164 1.33E-46 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS07630 a740dd69898e19219375b9d4fbf76d3d 305 Pfam PF02779 Transketolase, pyrimidine binding domain 1 160 2.5E-26 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RPE_RS07630 a740dd69898e19219375b9d4fbf76d3d 305 PANTHER PTHR11624:SF27 1 301 2.9E-70 T 23-04-2016 RPE_RS07630 a740dd69898e19219375b9d4fbf76d3d 305 SUPERFAMILY SSF52922 173 301 1.31E-22 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RPE_RS07630 a740dd69898e19219375b9d4fbf76d3d 305 SMART SM00861 1 165 7.4E-37 T 23-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RPE_RS07630 a740dd69898e19219375b9d4fbf76d3d 305 Gene3D G3DSA:3.40.50.920 178 301 1.3E-22 T 23-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RPE_RS07630 a740dd69898e19219375b9d4fbf76d3d 305 Gene3D G3DSA:3.40.50.970 1 177 1.1E-43 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS17770 4dfed3d932f2874e82c191756d9f7b59 458 PANTHER PTHR11079 220 453 2.3E-87 T 23-04-2016 RPE_RS17770 4dfed3d932f2874e82c191756d9f7b59 458 PANTHER PTHR11079 130 197 2.3E-87 T 23-04-2016 RPE_RS17770 4dfed3d932f2874e82c191756d9f7b59 458 SUPERFAMILY SSF55120 216 449 9.28E-60 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RPE_RS17770 4dfed3d932f2874e82c191756d9f7b59 458 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 267 281 - T 23-04-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 RPE_RS17770 4dfed3d932f2874e82c191756d9f7b59 458 Gene3D G3DSA:3.10.290.10 144 192 4.4E-5 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RPE_RS17770 4dfed3d932f2874e82c191756d9f7b59 458 SUPERFAMILY SSF55174 144 194 3.14E-7 T 23-04-2016 RPE_RS17770 4dfed3d932f2874e82c191756d9f7b59 458 SMART SM00363 144 205 1.1E-4 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RPE_RS17770 4dfed3d932f2874e82c191756d9f7b59 458 Pfam PF01479 S4 domain 144 188 1.1E-6 T 23-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RPE_RS17770 4dfed3d932f2874e82c191756d9f7b59 458 Pfam PF00849 RNA pseudouridylate synthase 227 381 3.0E-34 T 23-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RPE_RS17770 4dfed3d932f2874e82c191756d9f7b59 458 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 141 437 6.1E-61 T 23-04-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 RPE_RS17770 4dfed3d932f2874e82c191756d9f7b59 458 PANTHER PTHR11079:SF60 220 453 2.3E-87 T 23-04-2016 RPE_RS17770 4dfed3d932f2874e82c191756d9f7b59 458 PANTHER PTHR11079:SF60 130 197 2.3E-87 T 23-04-2016 RPE_RS18840 fa41eaa21527d6a727300e200d6a902f 612 Gene3D G3DSA:3.90.76.10 64 223 2.8E-32 T 23-04-2016 RPE_RS18840 fa41eaa21527d6a727300e200d6a902f 612 PANTHER PTHR30290 389 611 3.5E-202 T 23-04-2016 RPE_RS18840 fa41eaa21527d6a727300e200d6a902f 612 PANTHER PTHR30290 26 362 3.5E-202 T 23-04-2016 RPE_RS18840 fa41eaa21527d6a727300e200d6a902f 612 PIRSF PIRSF002741 26 604 3.3E-98 T 23-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RPE_RS18840 fa41eaa21527d6a727300e200d6a902f 612 Gene3D G3DSA:3.10.105.10 315 568 8.3E-53 T 23-04-2016 RPE_RS18840 fa41eaa21527d6a727300e200d6a902f 612 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 102 513 3.6E-81 T 23-04-2016 IPR000914 Solute-binding protein family 5 domain RPE_RS18840 fa41eaa21527d6a727300e200d6a902f 612 PANTHER PTHR30290:SF2 26 362 3.5E-202 T 23-04-2016 RPE_RS18840 fa41eaa21527d6a727300e200d6a902f 612 SUPERFAMILY SSF53850 49 599 9.41E-121 T 23-04-2016 RPE_RS18840 fa41eaa21527d6a727300e200d6a902f 612 PANTHER PTHR30290:SF2 389 611 3.5E-202 T 23-04-2016 RPE_RS10900 ef88019b4f7dbca6bc037a9a45948438 101 Gene3D G3DSA:1.10.260.40 7 55 5.9E-5 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS10900 ef88019b4f7dbca6bc037a9a45948438 101 SUPERFAMILY SSF47413 5 45 3.75E-5 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS23080 7b6f9a4f6c1d86e576640909bc234146 464 Gene3D G3DSA:3.20.20.80 112 446 7.5E-18 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RPE_RS23080 7b6f9a4f6c1d86e576640909bc234146 464 SUPERFAMILY SSF51445 46 185 1.45E-22 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RPE_RS23080 7b6f9a4f6c1d86e576640909bc234146 464 SUPERFAMILY SSF51445 280 434 1.45E-22 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RPE_RS14815 778902156d171cbb3a26690d0a377388 178 PANTHER PTHR36302:SF1 9 178 1.5E-37 T 23-04-2016 RPE_RS14815 778902156d171cbb3a26690d0a377388 178 PANTHER PTHR36302 9 178 1.5E-37 T 23-04-2016 RPE_RS14815 778902156d171cbb3a26690d0a377388 178 SUPERFAMILY SSF110087 20 163 1.24E-47 T 23-04-2016 IPR007410 DR1885-like metal-binding protein RPE_RS14815 778902156d171cbb3a26690d0a377388 178 Pfam PF04314 Protein of unknown function (DUF461) 46 155 7.3E-39 T 23-04-2016 IPR007410 DR1885-like metal-binding protein RPE_RS23660 57fac2f8a4a267099d7041984e0b90f3 133 PANTHER PTHR33990:SF1 1 133 1.0E-47 T 23-04-2016 RPE_RS23660 57fac2f8a4a267099d7041984e0b90f3 133 Gene3D G3DSA:3.10.180.10 7 133 8.4E-44 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RPE_RS23660 57fac2f8a4a267099d7041984e0b90f3 133 PANTHER PTHR33990 1 133 1.0E-47 T 23-04-2016 RPE_RS23660 57fac2f8a4a267099d7041984e0b90f3 133 SUPERFAMILY SSF54593 1 133 6.06E-38 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RPE_RS23660 57fac2f8a4a267099d7041984e0b90f3 133 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 3 130 3.4E-12 T 23-04-2016 IPR028973 3-demethylubiquinone-9 3-methyltransferase RPE_RS23400 20a8aea5b5add24fd837a40488110654 167 SUPERFAMILY SSF52964 42 140 5.49E-5 T 23-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 RPE_RS23400 20a8aea5b5add24fd837a40488110654 167 Pfam PF11684 Protein of unknown function (DUF2380) 21 158 2.3E-52 T 23-04-2016 IPR021698 Protein of unknown function DUF2380 RPE_RS23400 20a8aea5b5add24fd837a40488110654 167 Gene3D G3DSA:3.40.50.10070 45 138 5.2E-4 T 23-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 RPE_RS17205 7da895e6504400c2ab0f0271739a9aa2 80 Gene3D G3DSA:3.40.1620.10 1 49 1.3E-19 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RPE_RS17205 7da895e6504400c2ab0f0271739a9aa2 80 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 57 4.5E-17 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RPE_RS17205 7da895e6504400c2ab0f0271739a9aa2 80 SUPERFAMILY SSF143120 1 48 3.14E-13 T 23-04-2016 RPE_RS17205 7da895e6504400c2ab0f0271739a9aa2 80 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 3 49 2.6E-12 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RPE_RS07940 0db7a11c45ae46e475a4f0e183ce8b8d 277 SUPERFAMILY SSF47413 10 74 3.75E-14 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS07940 0db7a11c45ae46e475a4f0e183ce8b8d 277 PANTHER PTHR10245:SF17 16 134 2.0E-61 T 23-04-2016 RPE_RS07940 0db7a11c45ae46e475a4f0e183ce8b8d 277 PANTHER PTHR10245 16 134 2.0E-61 T 23-04-2016 RPE_RS07940 0db7a11c45ae46e475a4f0e183ce8b8d 277 SMART SM00530 20 75 7.4E-11 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RPE_RS07940 0db7a11c45ae46e475a4f0e183ce8b8d 277 Gene3D G3DSA:1.10.260.40 16 74 2.7E-13 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS07940 0db7a11c45ae46e475a4f0e183ce8b8d 277 Pfam PF13560 Helix-turn-helix domain 17 77 2.2E-10 T 23-04-2016 RPE_RS21965 9b573b7afb3aaa99ed03796a6d358032 325 SUPERFAMILY SSF46785 244 316 4.35E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS21965 9b573b7afb3aaa99ed03796a6d358032 325 Gene3D G3DSA:3.90.79.10 13 128 1.1E-11 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS21965 9b573b7afb3aaa99ed03796a6d358032 325 Gene3D G3DSA:3.90.79.10 218 250 1.1E-11 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS21965 9b573b7afb3aaa99ed03796a6d358032 325 PIRSF PIRSF019423 1 325 5.2E-147 T 23-04-2016 IPR011213 Nicotinic acid mononucleotide biosynthesis protein RPE_RS21965 9b573b7afb3aaa99ed03796a6d358032 325 Gene3D G3DSA:1.10.10.10 251 316 3.4E-31 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS21965 9b573b7afb3aaa99ed03796a6d358032 325 SUPERFAMILY SSF55811 14 146 1.49E-11 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS22730 13673c0e56229bc8e1bce1f6efacd8e9 487 PANTHER PTHR24064:SF172 75 464 1.4E-92 T 23-04-2016 RPE_RS22730 13673c0e56229bc8e1bce1f6efacd8e9 487 Pfam PF00083 Sugar (and other) transporter 71 442 1.1E-40 T 23-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RPE_RS22730 13673c0e56229bc8e1bce1f6efacd8e9 487 Gene3D G3DSA:1.20.1250.20 286 468 1.7E-18 T 23-04-2016 RPE_RS22730 13673c0e56229bc8e1bce1f6efacd8e9 487 Gene3D G3DSA:1.20.1250.20 46 228 2.2E-29 T 23-04-2016 RPE_RS22730 13673c0e56229bc8e1bce1f6efacd8e9 487 PANTHER PTHR24064 75 464 1.4E-92 T 23-04-2016 RPE_RS22730 13673c0e56229bc8e1bce1f6efacd8e9 487 SUPERFAMILY SSF103473 24 478 2.35E-70 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS22775 a4242236cb7285a3d4201bccc9de2e9c 151 ProSitePatterns PS00018 EF-hand calcium-binding domain. 112 124 - T 23-04-2016 IPR018247 EF-Hand 1, calcium-binding site RPE_RS22775 a4242236cb7285a3d4201bccc9de2e9c 151 ProSitePatterns PS00018 EF-hand calcium-binding domain. 80 92 - T 23-04-2016 IPR018247 EF-Hand 1, calcium-binding site RPE_RS22775 a4242236cb7285a3d4201bccc9de2e9c 151 Gene3D G3DSA:1.10.238.10 88 125 1.7E-7 T 23-04-2016 IPR011992 EF-hand domain pair RPE_RS22775 a4242236cb7285a3d4201bccc9de2e9c 151 SUPERFAMILY SSF47473 53 126 7.3E-12 T 23-04-2016 IPR011992 EF-hand domain pair RPE_RS22775 a4242236cb7285a3d4201bccc9de2e9c 151 Pfam PF13202 EF hand 54 68 0.013 T 23-04-2016 IPR002048 EF-hand domain GO:0005509 RPE_RS22775 a4242236cb7285a3d4201bccc9de2e9c 151 Pfam PF13833 EF-hand domain pair 74 96 0.0032 T 23-04-2016 IPR002048 EF-hand domain GO:0005509 RPE_RS22775 a4242236cb7285a3d4201bccc9de2e9c 151 Gene3D G3DSA:1.10.238.10 52 87 2.2E-4 T 23-04-2016 IPR011992 EF-hand domain pair RPE_RS09330 516f1b8cc96eae5008c3b251d1ea4bf8 154 PANTHER PTHR33337 1 129 6.6E-50 T 23-04-2016 RPE_RS09330 516f1b8cc96eae5008c3b251d1ea4bf8 154 Gene3D G3DSA:3.90.1590.10 4 154 8.5E-41 T 23-04-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 RPE_RS09330 516f1b8cc96eae5008c3b251d1ea4bf8 154 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 31 115 4.5E-20 T 23-04-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 RPE_RS09330 516f1b8cc96eae5008c3b251d1ea4bf8 154 PANTHER PTHR33337:SF4 1 129 6.6E-50 T 23-04-2016 RPE_RS09330 516f1b8cc96eae5008c3b251d1ea4bf8 154 SUPERFAMILY SSF51316 6 134 1.99E-42 T 23-04-2016 IPR011057 Mss4-like RPE_RS18375 d7d88691ae5f3a2be7d3d51213196de3 279 Pfam PF03239 Iron permease FTR1 family 8 261 1.3E-27 T 23-04-2016 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0006827|GO:0016020|GO:0033573 RPE_RS18375 d7d88691ae5f3a2be7d3d51213196de3 279 PANTHER PTHR31632 8 275 2.9E-41 T 23-04-2016 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0006827|GO:0016020|GO:0033573 RPE_RS04795 d419a7633b622a51a01ac1474ecb09cd 671 PANTHER PTHR22773 1 604 3.2E-228 T 23-04-2016 RPE_RS04795 d419a7633b622a51a01ac1474ecb09cd 671 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 167 191 1.3E-8 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RPE_RS04795 d419a7633b622a51a01ac1474ecb09cd 671 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 236 260 1.3E-8 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RPE_RS04795 d419a7633b622a51a01ac1474ecb09cd 671 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 387 413 1.3E-8 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RPE_RS04795 d419a7633b622a51a01ac1474ecb09cd 671 PANTHER PTHR22773:SF91 1 604 3.2E-228 T 23-04-2016 RPE_RS04795 d419a7633b622a51a01ac1474ecb09cd 671 Pfam PF00361 Proton-conducting membrane transporter 130 417 6.6E-57 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RPE_RS23685 dae75dd93ceac9d16e3e4d44fe28a217 180 PANTHER PTHR10094 3 147 1.4E-17 T 23-04-2016 RPE_RS23685 dae75dd93ceac9d16e3e4d44fe28a217 180 Pfam PF02036 SCP-2 sterol transfer family 47 135 1.8E-7 T 23-04-2016 IPR003033 SCP2 sterol-binding domain RPE_RS23685 dae75dd93ceac9d16e3e4d44fe28a217 180 SUPERFAMILY SSF55718 23 142 4.71E-18 T 23-04-2016 IPR003033 SCP2 sterol-binding domain RPE_RS23685 dae75dd93ceac9d16e3e4d44fe28a217 180 PANTHER PTHR10094:SF16 3 147 1.4E-17 T 23-04-2016 RPE_RS10500 2ca92387e8a834e3005ffbc2ca678e11 401 SUPERFAMILY SSF111369 107 193 3.47E-9 T 23-04-2016 RPE_RS10500 2ca92387e8a834e3005ffbc2ca678e11 401 PANTHER PTHR30386:SF0 26 401 3.2E-89 T 23-04-2016 RPE_RS10500 2ca92387e8a834e3005ffbc2ca678e11 401 SUPERFAMILY SSF111369 222 346 6.54E-16 T 23-04-2016 RPE_RS10500 2ca92387e8a834e3005ffbc2ca678e11 401 Gene3D G3DSA:2.40.50.100 268 301 4.4E-15 T 23-04-2016 RPE_RS10500 2ca92387e8a834e3005ffbc2ca678e11 401 Gene3D G3DSA:2.40.50.100 108 137 4.4E-15 T 23-04-2016 RPE_RS10500 2ca92387e8a834e3005ffbc2ca678e11 401 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 225 347 1.1E-18 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RPE_RS10500 2ca92387e8a834e3005ffbc2ca678e11 401 Pfam PF13533 Biotin-lipoyl like 109 152 8.4E-9 T 23-04-2016 RPE_RS10500 2ca92387e8a834e3005ffbc2ca678e11 401 PANTHER PTHR30386 26 401 3.2E-89 T 23-04-2016 RPE_RS03010 634dd87f8ad28d727d7f91eae7c99198 81 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RPE_RS03010 634dd87f8ad28d727d7f91eae7c99198 81 Gene3D G3DSA:3.30.70.20 4 77 5.5E-17 T 23-04-2016 RPE_RS03010 634dd87f8ad28d727d7f91eae7c99198 81 PANTHER PTHR24960:SF38 1 77 1.9E-16 T 23-04-2016 RPE_RS03010 634dd87f8ad28d727d7f91eae7c99198 81 SUPERFAMILY SSF54862 5 77 3.63E-18 T 23-04-2016 RPE_RS03010 634dd87f8ad28d727d7f91eae7c99198 81 PANTHER PTHR24960 1 77 1.9E-16 T 23-04-2016 RPE_RS03010 634dd87f8ad28d727d7f91eae7c99198 81 Pfam PF00037 4Fe-4S binding domain 6 25 8.0E-7 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RPE_RS14205 eb740741cb45512fcef5a69e8a9eb245 198 SUPERFAMILY SSF46955 10 79 5.95E-15 T 23-04-2016 IPR009061 Putative DNA-binding domain RPE_RS14205 eb740741cb45512fcef5a69e8a9eb245 198 PANTHER PTHR30204 1 85 1.6E-21 T 23-04-2016 RPE_RS14205 eb740741cb45512fcef5a69e8a9eb245 198 PANTHER PTHR30204:SF15 1 85 1.6E-21 T 23-04-2016 RPE_RS14205 eb740741cb45512fcef5a69e8a9eb245 198 Pfam PF13411 MerR HTH family regulatory protein 10 78 3.7E-24 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RPE_RS14205 eb740741cb45512fcef5a69e8a9eb245 198 SMART SM00422 10 79 1.6E-4 T 23-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RPE_RS14205 eb740741cb45512fcef5a69e8a9eb245 198 Gene3D G3DSA:1.10.1660.10 10 77 3.8E-12 T 23-04-2016 RPE_RS18420 3b0162d2ad2645e3700860b290f7a77c 95 SMART SM00899 15 94 5.0E-8 T 23-04-2016 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 RPE_RS18420 3b0162d2ad2645e3700860b290f7a77c 95 PANTHER PTHR33238 13 94 2.1E-21 T 23-04-2016 RPE_RS18420 3b0162d2ad2645e3700860b290f7a77c 95 PANTHER PTHR33238:SF4 13 94 2.1E-21 T 23-04-2016 RPE_RS18420 3b0162d2ad2645e3700860b290f7a77c 95 Pfam PF04023 FeoA domain 15 93 1.3E-15 T 23-04-2016 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 RPE_RS18420 3b0162d2ad2645e3700860b290f7a77c 95 SUPERFAMILY SSF50037 41 93 1.03E-9 T 23-04-2016 IPR008988 Transcriptional repressor, C-terminal RPE_RS02870 a7ab15e189417b1dcff6510d4bae1479 318 Pfam PF00144 Beta-lactamase 50 304 4.8E-19 T 23-04-2016 IPR001466 Beta-lactamase-related RPE_RS02870 a7ab15e189417b1dcff6510d4bae1479 318 PANTHER PTHR22935 52 303 2.8E-26 T 23-04-2016 RPE_RS02870 a7ab15e189417b1dcff6510d4bae1479 318 SUPERFAMILY SSF56601 47 304 1.3E-46 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS02870 a7ab15e189417b1dcff6510d4bae1479 318 Gene3D G3DSA:3.40.710.10 48 307 6.1E-32 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS09600 de9673be6010cb836468b8c47b782ba4 121 Gene3D G3DSA:1.25.40.70 1 108 1.2E-38 T 23-04-2016 IPR001263 Phosphoinositide 3-kinase, accessory (PIK) domain RPE_RS09600 de9673be6010cb836468b8c47b782ba4 121 SUPERFAMILY SSF48371 1 114 3.09E-39 T 23-04-2016 IPR016024 Armadillo-type fold GO:0005488 RPE_RS09600 de9673be6010cb836468b8c47b782ba4 121 Pfam PF09450 Domain of unknown function (DUF2019) 5 108 1.4E-29 T 23-04-2016 IPR018568 Domain of unknown function DUF2019 RPE_RS23390 188f26baa3c0e10693c9e0b2a82a6be0 189 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 47 109 1.0E-9 T 23-04-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 RPE_RS23390 188f26baa3c0e10693c9e0b2a82a6be0 189 PIRSF PIRSF033318 1 189 1.5E-103 T 23-04-2016 IPR014185 Glutathione-dependent formaldehyde-activating enzyme GO:0008270|GO:0046294|GO:0051907 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 RPE_RS23390 188f26baa3c0e10693c9e0b2a82a6be0 189 Gene3D G3DSA:3.90.1590.10 2 186 5.6E-53 T 23-04-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 RPE_RS23390 188f26baa3c0e10693c9e0b2a82a6be0 189 Hamap MF_00723 Glutathione-dependent formaldehyde-activating enzyme [gfa]. 1 189 125.666 T 23-04-2016 IPR014185 Glutathione-dependent formaldehyde-activating enzyme GO:0008270|GO:0046294|GO:0051907 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 RPE_RS23390 188f26baa3c0e10693c9e0b2a82a6be0 189 TIGRFAM TIGR02820 formald_GSH: S-(hydroxymethyl)glutathione synthase 4 184 3.9E-101 T 23-04-2016 IPR014185 Glutathione-dependent formaldehyde-activating enzyme GO:0008270|GO:0046294|GO:0051907 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 RPE_RS23390 188f26baa3c0e10693c9e0b2a82a6be0 189 SUPERFAMILY SSF51316 2 186 4.71E-53 T 23-04-2016 IPR011057 Mss4-like RPE_RS03890 bada989b1046b0a7398fb9d812cfb351 303 PANTHER PTHR30244:SF5 3 298 2.6E-22 T 23-04-2016 RPE_RS03890 bada989b1046b0a7398fb9d812cfb351 303 Pfam PF00669 Bacterial flagellin N-terminal helical region 7 139 4.2E-11 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RPE_RS03890 bada989b1046b0a7398fb9d812cfb351 303 SUPERFAMILY SSF64518 1 302 7.72E-29 T 23-04-2016 RPE_RS03890 bada989b1046b0a7398fb9d812cfb351 303 PANTHER PTHR30244 3 298 2.6E-22 T 23-04-2016 RPE_RS19930 4c3f21dd19b54f6c7d32201966c32ab0 375 SUPERFAMILY SSF51905 131 245 9.58E-5 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS19930 4c3f21dd19b54f6c7d32201966c32ab0 375 Gene3D G3DSA:3.50.50.60 180 246 2.1E-6 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS19930 4c3f21dd19b54f6c7d32201966c32ab0 375 PANTHER PTHR10632:SF7 1 375 1.5E-49 T 23-04-2016 RPE_RS19930 4c3f21dd19b54f6c7d32201966c32ab0 375 Gene3D G3DSA:3.50.50.60 2 108 1.2E-29 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS19930 4c3f21dd19b54f6c7d32201966c32ab0 375 Gene3D G3DSA:3.50.50.60 247 323 1.2E-29 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS19930 4c3f21dd19b54f6c7d32201966c32ab0 375 PANTHER PTHR10632 1 375 1.5E-49 T 23-04-2016 RPE_RS19930 4c3f21dd19b54f6c7d32201966c32ab0 375 SUPERFAMILY SSF51905 3 107 1.71E-30 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS19930 4c3f21dd19b54f6c7d32201966c32ab0 375 SUPERFAMILY SSF51905 241 317 1.71E-30 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS19930 4c3f21dd19b54f6c7d32201966c32ab0 375 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 303 8.8E-19 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS24435 ced6686e0d545f0193788e468314a3fc 281 PANTHER PTHR30425 1 281 3.0E-111 T 23-04-2016 RPE_RS24435 ced6686e0d545f0193788e468314a3fc 281 PANTHER PTHR30425:SF0 1 281 3.0E-111 T 23-04-2016 RPE_RS24435 ced6686e0d545f0193788e468314a3fc 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 275 3.1E-21 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS24435 ced6686e0d545f0193788e468314a3fc 281 Gene3D G3DSA:1.10.3720.10 61 274 1.4E-33 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS24435 ced6686e0d545f0193788e468314a3fc 281 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 14 276 3.1E-78 T 23-04-2016 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 RPE_RS24435 ced6686e0d545f0193788e468314a3fc 281 SUPERFAMILY SSF161098 30 269 5.63E-28 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS08600 1f7066c0b6b973660830ec6587236c22 602 Pfam PF00005 ABC transporter 362 510 2.2E-32 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS08600 1f7066c0b6b973660830ec6587236c22 602 PANTHER PTHR24221 9 589 5.3E-175 T 23-04-2016 RPE_RS08600 1f7066c0b6b973660830ec6587236c22 602 SUPERFAMILY SSF90123 486 494 2.75E-47 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RPE_RS08600 1f7066c0b6b973660830ec6587236c22 602 SUPERFAMILY SSF90123 10 309 2.75E-47 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RPE_RS08600 1f7066c0b6b973660830ec6587236c22 602 Gene3D G3DSA:3.40.50.300 344 573 3.4E-77 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS08600 1f7066c0b6b973660830ec6587236c22 602 ProSitePatterns PS00211 ABC transporters family signature. 482 496 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS08600 1f7066c0b6b973660830ec6587236c22 602 SMART SM00382 370 556 2.0E-18 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS08600 1f7066c0b6b973660830ec6587236c22 602 Pfam PF00664 ABC transporter transmembrane region 29 297 1.3E-37 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RPE_RS08600 1f7066c0b6b973660830ec6587236c22 602 SUPERFAMILY SSF52540 340 581 2.31E-84 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS08600 1f7066c0b6b973660830ec6587236c22 602 Gene3D G3DSA:1.20.1560.10 9 323 1.8E-42 T 23-04-2016 RPE_RS04870 604a8a258e445fda869313f65c86a890 116 Gene3D G3DSA:2.30.330.10 29 114 3.2E-31 T 23-04-2016 RPE_RS04870 604a8a258e445fda869313f65c86a890 116 SUPERFAMILY SSF101801 38 113 3.79E-23 T 23-04-2016 IPR001543 Surface presentation of antigen (SpoA) RPE_RS04870 604a8a258e445fda869313f65c86a890 116 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 39 112 8.1E-30 T 23-04-2016 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 RPE_RS04870 604a8a258e445fda869313f65c86a890 116 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 41 111 5.3E-25 T 23-04-2016 IPR001543 Surface presentation of antigen (SpoA) RPE_RS04870 604a8a258e445fda869313f65c86a890 116 PANTHER PTHR30034:SF1 27 115 7.5E-22 T 23-04-2016 RPE_RS04870 604a8a258e445fda869313f65c86a890 116 PRINTS PR00956 Flagellar motor switch protein FliN signature 87 102 4.9E-25 T 23-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RPE_RS04870 604a8a258e445fda869313f65c86a890 116 PRINTS PR00956 Flagellar motor switch protein FliN signature 74 87 4.9E-25 T 23-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RPE_RS04870 604a8a258e445fda869313f65c86a890 116 PRINTS PR00956 Flagellar motor switch protein FliN signature 41 57 4.9E-25 T 23-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RPE_RS04870 604a8a258e445fda869313f65c86a890 116 PRINTS PR00956 Flagellar motor switch protein FliN signature 58 74 4.9E-25 T 23-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RPE_RS04870 604a8a258e445fda869313f65c86a890 116 PANTHER PTHR30034 27 115 7.5E-22 T 23-04-2016 RPE_RS03610 3e1e207b02bde53ae8786a10e39a5ad2 244 Pfam PF12706 Beta-lactamase superfamily domain 30 220 1.6E-23 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS03610 3e1e207b02bde53ae8786a10e39a5ad2 244 PANTHER PTHR12553 1 244 3.3E-47 T 23-04-2016 RPE_RS03610 3e1e207b02bde53ae8786a10e39a5ad2 244 Gene3D G3DSA:3.60.15.10 1 244 4.8E-50 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS03610 3e1e207b02bde53ae8786a10e39a5ad2 244 SMART SM00849 18 219 1.0E-9 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS03610 3e1e207b02bde53ae8786a10e39a5ad2 244 SUPERFAMILY SSF56281 1 244 1.01E-53 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS02650 930615a168275e4e5dca9f09c02f7b5c 324 Gene3D G3DSA:1.10.3470.10 2 317 8.1E-91 T 23-04-2016 IPR029022 ABC transporter, BtuC-like RPE_RS02650 930615a168275e4e5dca9f09c02f7b5c 324 Pfam PF01032 FecCD transport family 4 314 7.8E-83 T 23-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 RPE_RS02650 930615a168275e4e5dca9f09c02f7b5c 324 SUPERFAMILY SSF81345 2 314 3.27E-70 T 23-04-2016 IPR029022 ABC transporter, BtuC-like RPE_RS02650 930615a168275e4e5dca9f09c02f7b5c 324 PANTHER PTHR30472 1 320 3.5E-89 T 23-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 RPE_RS03630 1c4cd4b6b56d05df9bda18fea753bce7 346 PANTHER PTHR11203 5 220 1.1E-102 T 23-04-2016 RPE_RS03630 1c4cd4b6b56d05df9bda18fea753bce7 346 Gene3D G3DSA:3.60.15.10 26 142 5.1E-17 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS03630 1c4cd4b6b56d05df9bda18fea753bce7 346 TIGRFAM TIGR04122 Xnuc_lig_assoc: putative exonuclease, DNA ligase-associated 7 332 3.0E-143 T 23-04-2016 IPR026360 Putative exonuclease, DNA ligase-associated RPE_RS03630 1c4cd4b6b56d05df9bda18fea753bce7 346 PANTHER PTHR11203:SF35 5 220 1.1E-102 T 23-04-2016 RPE_RS03630 1c4cd4b6b56d05df9bda18fea753bce7 346 SUPERFAMILY SSF56281 8 313 1.49E-61 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS04665 87d84d39abdac8422950a5f743ac5f44 83 TIGRFAM TIGR01682 moaD: molybdopterin converting factor, subunit 1 1 83 7.6E-23 T 23-04-2016 IPR010034 Molybdopterin converting factor, subunit 1 GO:0006777 UniPathway: UPA00344 RPE_RS04665 87d84d39abdac8422950a5f743ac5f44 83 Pfam PF02597 ThiS family 3 83 1.2E-15 T 23-04-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 RPE_RS04665 87d84d39abdac8422950a5f743ac5f44 83 PANTHER PTHR33359 1 83 2.9E-21 T 23-04-2016 RPE_RS04665 87d84d39abdac8422950a5f743ac5f44 83 SUPERFAMILY SSF54285 1 83 4.86E-19 T 23-04-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp RPE_RS04665 87d84d39abdac8422950a5f743ac5f44 83 Gene3D G3DSA:3.10.20.30 1 83 2.2E-21 T 23-04-2016 IPR012675 Beta-grasp domain RPE_RS15635 57cb8574e0f4d69f5a563b108661c767 270 TIGRFAM TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein 1 242 7.4E-104 T 23-04-2016 IPR012693 ABC transporter, phosphonate import, PhnC GO:0005524|GO:0015416|GO:0015716|GO:0016020 RPE_RS15635 57cb8574e0f4d69f5a563b108661c767 270 Gene3D G3DSA:3.40.50.300 1 235 7.2E-70 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15635 57cb8574e0f4d69f5a563b108661c767 270 Pfam PF00005 ABC transporter 18 173 4.9E-34 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS15635 57cb8574e0f4d69f5a563b108661c767 270 SMART SM00382 26 230 2.1E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS15635 57cb8574e0f4d69f5a563b108661c767 270 PANTHER PTHR24220:SF408 3 250 3.6E-130 T 23-04-2016 RPE_RS15635 57cb8574e0f4d69f5a563b108661c767 270 SUPERFAMILY SSF52540 2 235 1.38E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15635 57cb8574e0f4d69f5a563b108661c767 270 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS15635 57cb8574e0f4d69f5a563b108661c767 270 PANTHER PTHR24220 3 250 3.6E-130 T 23-04-2016 RPE_RS00140 e7bc1ac9d2d7de598ec145729f27e24a 73 Pfam PF07896 Protein of unknown function (DUF1674) 31 73 1.2E-16 T 23-04-2016 IPR012875 Protein of unknown function DUF1674 RPE_RS00140 e7bc1ac9d2d7de598ec145729f27e24a 73 PANTHER PTHR28524:SF2 42 73 1.1E-18 T 23-04-2016 RPE_RS00140 e7bc1ac9d2d7de598ec145729f27e24a 73 PANTHER PTHR28524 42 73 1.1E-18 T 23-04-2016 RPE_RS06700 fd9428e58e555571ce8867170edb4574 482 PANTHER PTHR33712 2 479 1.9E-73 T 23-04-2016 RPE_RS06700 fd9428e58e555571ce8867170edb4574 482 Gene3D G3DSA:3.40.50.1980 148 250 1.4E-13 T 23-04-2016 RPE_RS06700 fd9428e58e555571ce8867170edb4574 482 PANTHER PTHR33712:SF7 2 479 1.9E-73 T 23-04-2016 RPE_RS06700 fd9428e58e555571ce8867170edb4574 482 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 12 392 2.4E-36 T 23-04-2016 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 RPE_RS06700 fd9428e58e555571ce8867170edb4574 482 PIRSF PIRSF000163 1 479 1.4E-135 T 23-04-2016 IPR016209 Protochlorophyllide reductase, ChlB, light independent GO:0016730|GO:0046148|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RPE_RS06700 fd9428e58e555571ce8867170edb4574 482 SUPERFAMILY SSF53807 4 404 2.06E-76 T 23-04-2016 RPE_RS06700 fd9428e58e555571ce8867170edb4574 482 Pfam PF08369 Proto-chlorophyllide reductase 57 kD subunit 422 474 1.1E-12 T 23-04-2016 IPR013580 Proto-chlorophyllide/chlorophyllide reductase, C-terminal GO:0015979|GO:0015995|GO:0016491|GO:0055114 KEGG: 00860+1.3.7.7|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RPE_RS06700 fd9428e58e555571ce8867170edb4574 482 TIGRFAM TIGR02014 BchZ: chlorophyllide reductase subunit Z 2 470 5.2E-244 T 23-04-2016 IPR010244 Chlorophyllide reductase subunit Z GO:0016730|GO:0030494|GO:0055114 KEGG: 00860+1.3.99.35|MetaCyc: PWY-5526|UniPathway: UPA00669 RPE_RS15585 96e073381d33b7457180015ef68999ce 232 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS15585 96e073381d33b7457180015ef68999ce 232 TIGRFAM TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL 4 226 9.5E-105 T 23-04-2016 IPR012701 Phosphonate C-P lyase system, PhnL KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399 RPE_RS15585 96e073381d33b7457180015ef68999ce 232 PANTHER PTHR24220 6 225 1.9E-114 T 23-04-2016 RPE_RS15585 96e073381d33b7457180015ef68999ce 232 PANTHER PTHR24220:SF380 6 225 1.9E-114 T 23-04-2016 RPE_RS15585 96e073381d33b7457180015ef68999ce 232 Pfam PF00005 ABC transporter 28 181 4.6E-27 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS15585 96e073381d33b7457180015ef68999ce 232 Gene3D G3DSA:3.40.50.300 2 224 2.9E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15585 96e073381d33b7457180015ef68999ce 232 SMART SM00382 36 229 9.6E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS15585 96e073381d33b7457180015ef68999ce 232 SUPERFAMILY SSF52540 25 225 2.87E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS17585 2f297ab7c31438d07ca291af7cc7c0d7 582 SMART SM00382 359 546 7.0E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS17585 2f297ab7c31438d07ca291af7cc7c0d7 582 PANTHER PTHR24222:SF0 1 557 6.3E-230 T 23-04-2016 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 RPE_RS17585 2f297ab7c31438d07ca291af7cc7c0d7 582 Pfam PF00664 ABC transporter transmembrane region 28 281 5.3E-14 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RPE_RS17585 2f297ab7c31438d07ca291af7cc7c0d7 582 Gene3D G3DSA:3.40.50.300 335 558 8.5E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS17585 2f297ab7c31438d07ca291af7cc7c0d7 582 SUPERFAMILY SSF52540 327 557 9.69E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS17585 2f297ab7c31438d07ca291af7cc7c0d7 582 PANTHER PTHR24222 1 557 6.3E-230 T 23-04-2016 RPE_RS17585 2f297ab7c31438d07ca291af7cc7c0d7 582 SUPERFAMILY SSF90123 15 323 6.28E-47 T 23-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RPE_RS17585 2f297ab7c31438d07ca291af7cc7c0d7 582 Pfam PF00005 ABC transporter 350 499 2.4E-28 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS17585 2f297ab7c31438d07ca291af7cc7c0d7 582 ProSitePatterns PS00211 ABC transporters family signature. 471 485 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS17585 2f297ab7c31438d07ca291af7cc7c0d7 582 TIGRFAM TIGR01842 type_I_sec_PrtD: type I secretion system ATPase 16 558 1.8E-210 T 23-04-2016 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 RPE_RS17585 2f297ab7c31438d07ca291af7cc7c0d7 582 Gene3D G3DSA:1.20.1560.10 14 320 2.2E-41 T 23-04-2016 RPE_RS08605 6f3fa5f44cb0d7b6c622668ca7355f47 130 PANTHER PTHR11058 12 127 1.7E-37 T 23-04-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 RPE_RS08605 6f3fa5f44cb0d7b6c622668ca7355f47 130 PANTHER PTHR11058:SF5 12 127 1.7E-37 T 23-04-2016 RPE_RS08605 6f3fa5f44cb0d7b6c622668ca7355f47 130 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 26 123 3.3E-26 T 23-04-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 RPE_RS08605 6f3fa5f44cb0d7b6c622668ca7355f47 130 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 7 124 16.455 T 23-04-2016 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 RPE_RS18230 af966609e00919eb753f884ab8b59091 292 PANTHER PTHR10992:SF107 24 193 5.5E-38 T 23-04-2016 RPE_RS18230 af966609e00919eb753f884ab8b59091 292 PANTHER PTHR10992:SF107 213 292 5.5E-38 T 23-04-2016 RPE_RS18230 af966609e00919eb753f884ab8b59091 292 Pfam PF00561 alpha/beta hydrolase fold 43 280 7.0E-24 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS18230 af966609e00919eb753f884ab8b59091 292 SUPERFAMILY SSF53474 19 291 9.54E-55 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS18230 af966609e00919eb753f884ab8b59091 292 PANTHER PTHR10992 24 193 5.5E-38 T 23-04-2016 RPE_RS18230 af966609e00919eb753f884ab8b59091 292 PRINTS PR00412 Epoxide hydrolase signature 238 254 1.0E-7 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RPE_RS18230 af966609e00919eb753f884ab8b59091 292 PRINTS PR00412 Epoxide hydrolase signature 69 84 1.0E-7 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RPE_RS18230 af966609e00919eb753f884ab8b59091 292 PRINTS PR00412 Epoxide hydrolase signature 128 141 1.0E-7 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RPE_RS18230 af966609e00919eb753f884ab8b59091 292 PRINTS PR00412 Epoxide hydrolase signature 114 127 1.0E-7 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RPE_RS18230 af966609e00919eb753f884ab8b59091 292 PRINTS PR00412 Epoxide hydrolase signature 272 292 1.0E-7 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RPE_RS18230 af966609e00919eb753f884ab8b59091 292 Gene3D G3DSA:3.40.50.1820 20 291 2.8E-52 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS18230 af966609e00919eb753f884ab8b59091 292 PANTHER PTHR10992 213 292 5.5E-38 T 23-04-2016 RPE_RS18230 af966609e00919eb753f884ab8b59091 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 128 141 2.8E-13 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS18230 af966609e00919eb753f884ab8b59091 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 114 127 2.8E-13 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS18230 af966609e00919eb753f884ab8b59091 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 69 84 2.8E-13 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS18230 af966609e00919eb753f884ab8b59091 292 PRINTS PR00111 Alpha/beta hydrolase fold signature 240 254 2.8E-13 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS24520 d07a55fbdc1e0a16b1068d6f0685e055 369 PANTHER PTHR10233 9 368 4.1E-128 T 23-04-2016 RPE_RS24520 d07a55fbdc1e0a16b1068d6f0685e055 369 TIGRFAM TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 19 350 4.5E-122 T 23-04-2016 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 RPE_RS24520 d07a55fbdc1e0a16b1068d6f0685e055 369 PANTHER PTHR10233:SF6 9 368 4.1E-128 T 23-04-2016 RPE_RS24520 d07a55fbdc1e0a16b1068d6f0685e055 369 SUPERFAMILY SSF100950 1 352 2.79E-109 T 23-04-2016 RPE_RS24520 d07a55fbdc1e0a16b1068d6f0685e055 369 Gene3D G3DSA:1.20.120.420 9 163 4.4E-44 T 23-04-2016 IPR027363 Methylthioribose-1-phosphate isomerase-like, N-terminal domain KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 RPE_RS24520 d07a55fbdc1e0a16b1068d6f0685e055 369 Hamap MF_01678 Putative methylthioribose-1-phosphate isomerase [mtnA]. 7 360 35.032 T 23-04-2016 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 RPE_RS24520 d07a55fbdc1e0a16b1068d6f0685e055 369 Pfam PF01008 Initiation factor 2 subunit family 52 350 5.6E-60 T 23-04-2016 IPR000649 Initiation factor 2B-related GO:0044237 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 RPE_RS24520 d07a55fbdc1e0a16b1068d6f0685e055 369 TIGRFAM TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 39 350 3.7E-89 T 23-04-2016 IPR011559 Initiation factor 2B alpha/beta/delta GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 RPE_RS24520 d07a55fbdc1e0a16b1068d6f0685e055 369 Gene3D G3DSA:3.40.50.10470 164 352 7.3E-61 T 23-04-2016 RPE_RS01615 0c06b7b509c144ed1b3e81ba51308903 274 Gene3D G3DSA:3.20.80.10 183 274 6.4E-11 T 23-04-2016 IPR011256 Regulatory factor, effector binding domain RPE_RS01615 0c06b7b509c144ed1b3e81ba51308903 274 SMART SM00871 127 274 3.3E-13 T 23-04-2016 IPR010499 Bacterial transcription activator, effector binding RPE_RS01615 0c06b7b509c144ed1b3e81ba51308903 274 Pfam PF06445 GyrI-like small molecule binding domain 132 274 3.6E-10 T 23-04-2016 IPR029442 GyrI-like small molecule binding domain RPE_RS01615 0c06b7b509c144ed1b3e81ba51308903 274 SUPERFAMILY SSF55136 132 274 5.93E-18 T 23-04-2016 IPR011256 Regulatory factor, effector binding domain RPE_RS17365 81ae905bc1837501ef1a01b4a909ba1d 134 PANTHER PTHR30558 1 129 2.5E-32 T 23-04-2016 RPE_RS17365 81ae905bc1837501ef1a01b4a909ba1d 134 PANTHER PTHR30558:SF10 1 129 2.5E-32 T 23-04-2016 RPE_RS17365 81ae905bc1837501ef1a01b4a909ba1d 134 Pfam PF02472 Biopolymer transport protein ExbD/TolR 10 131 1.1E-27 T 23-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 RPE_RS20840 3f1f8638e688e3e2ee935f32121db708 277 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 9 267 1.9E-61 T 23-04-2016 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 RPE_RS20840 3f1f8638e688e3e2ee935f32121db708 277 Gene3D G3DSA:3.40.50.720 108 270 1.6E-50 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS20840 3f1f8638e688e3e2ee935f32121db708 277 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 124 192 1.2E-8 T 23-04-2016 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase RPE_RS20840 3f1f8638e688e3e2ee935f32121db708 277 PANTHER PTHR21089 9 275 5.5E-76 T 23-04-2016 RPE_RS20840 3f1f8638e688e3e2ee935f32121db708 277 Gene3D G3DSA:3.40.192.10 4 107 4.8E-28 T 23-04-2016 RPE_RS20840 3f1f8638e688e3e2ee935f32121db708 277 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 10 91 2.2E-21 T 23-04-2016 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 RPE_RS20840 3f1f8638e688e3e2ee935f32121db708 277 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 5 273 30.407 T 23-04-2016 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 RPE_RS20840 3f1f8638e688e3e2ee935f32121db708 277 SUPERFAMILY SSF51735 104 272 7.41E-40 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS20840 3f1f8638e688e3e2ee935f32121db708 277 SUPERFAMILY SSF53223 6 103 3.28E-24 T 23-04-2016 RPE_RS19400 4b8952e461469401e80560af0a5aaf9c 183 PANTHER PTHR12935 13 155 5.2E-23 T 23-04-2016 IPR017939 Gamma-glutamylcyclotransferase GO:0003839|GO:0006750 KEGG: 00480+2.3.2.4|MetaCyc: PWY-4041 RPE_RS19400 4b8952e461469401e80560af0a5aaf9c 183 Pfam PF13772 AIG2-like family 68 153 2.4E-9 T 23-04-2016 RPE_RS19400 4b8952e461469401e80560af0a5aaf9c 183 SUPERFAMILY SSF110857 13 136 5.1E-10 T 23-04-2016 IPR013024 Butirosin biosynthesis, BtrG-like RPE_RS19400 4b8952e461469401e80560af0a5aaf9c 183 Gene3D G3DSA:3.10.490.10 3 164 8.9E-34 T 23-04-2016 IPR013024 Butirosin biosynthesis, BtrG-like RPE_RS03735 9ec7716e9efee009f61f52a48cb349dc 342 PANTHER PTHR21240:SF11 1 342 1.4E-127 T 23-04-2016 RPE_RS03735 9ec7716e9efee009f61f52a48cb349dc 342 Pfam PF04909 Amidohydrolase 3 331 1.7E-54 T 23-04-2016 IPR006680 Amidohydrolase-related GO:0016787 RPE_RS03735 9ec7716e9efee009f61f52a48cb349dc 342 SUPERFAMILY SSF51556 1 338 5.83E-94 T 23-04-2016 IPR032466 Metal-dependent hydrolase RPE_RS03735 9ec7716e9efee009f61f52a48cb349dc 342 PANTHER PTHR21240 1 342 1.4E-127 T 23-04-2016 RPE_RS03735 9ec7716e9efee009f61f52a48cb349dc 342 Gene3D G3DSA:3.20.20.140 1 340 2.5E-88 T 23-04-2016 RPE_RS16420 87b363f0d4f42bf400127b7101430ef3 153 Pfam PF07681 DoxX 6 102 6.0E-16 T 23-04-2016 IPR032808 DoxX family RPE_RS16420 87b363f0d4f42bf400127b7101430ef3 153 PANTHER PTHR33452 58 138 8.0E-16 T 23-04-2016 RPE_RS16420 87b363f0d4f42bf400127b7101430ef3 153 PANTHER PTHR33452 8 40 8.0E-16 T 23-04-2016 RPE_RS16420 87b363f0d4f42bf400127b7101430ef3 153 PANTHER PTHR33452:SF6 58 138 8.0E-16 T 23-04-2016 RPE_RS16420 87b363f0d4f42bf400127b7101430ef3 153 PANTHER PTHR33452:SF6 8 40 8.0E-16 T 23-04-2016 RPE_RS00660 d0d2ecb5f0a54d46d80af4f1ac952145 355 Pfam PF13449 Esterase-like activity of phytase 87 339 6.3E-44 T 23-04-2016 IPR027372 Phytase-like domain RPE_RS00660 d0d2ecb5f0a54d46d80af4f1ac952145 355 PIRSF PIRSF031900 5 354 3.6E-114 T 23-04-2016 IPR014567 Uncharacterised conserved protein UCP031900 RPE_RS00660 d0d2ecb5f0a54d46d80af4f1ac952145 355 PANTHER PTHR41519 15 355 1.0E-48 T 23-04-2016 RPE_RS00660 d0d2ecb5f0a54d46d80af4f1ac952145 355 PANTHER PTHR41519:SF1 15 355 1.0E-48 T 23-04-2016 RPE_RS22055 53c41ecfd689527d37ecde8ab6742b29 254 PANTHER PTHR18895 23 240 3.0E-49 T 23-04-2016 RPE_RS22055 53c41ecfd689527d37ecde8ab6742b29 254 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 121 127 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RPE_RS22055 53c41ecfd689527d37ecde8ab6742b29 254 Gene3D G3DSA:3.40.50.150 31 243 4.7E-57 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS22055 53c41ecfd689527d37ecde8ab6742b29 254 Pfam PF05175 Methyltransferase small domain 34 175 6.8E-12 T 23-04-2016 IPR007848 Methyltransferase small domain GO:0008168 RPE_RS22055 53c41ecfd689527d37ecde8ab6742b29 254 PANTHER PTHR18895:SF75 23 240 3.0E-49 T 23-04-2016 RPE_RS22055 53c41ecfd689527d37ecde8ab6742b29 254 SUPERFAMILY SSF53335 29 196 1.73E-27 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS00610 104ede0913e4fe83cf456d043e5ae3d8 254 Gene3D G3DSA:2.40.50.90 64 150 4.0E-6 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RPE_RS00610 104ede0913e4fe83cf456d043e5ae3d8 254 Pfam PF00565 Staphylococcal nuclease homologue 69 149 2.4E-4 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RPE_RS00610 104ede0913e4fe83cf456d043e5ae3d8 254 SUPERFAMILY SSF50199 30 151 1.15E-12 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RPE_RS03935 94d133c7126bcad28b406d79b6578b2a 276 Pfam PF00700 Bacterial flagellin C-terminal helical region 192 275 1.2E-19 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RPE_RS03935 94d133c7126bcad28b406d79b6578b2a 276 SUPERFAMILY SSF64518 1 275 5.1E-69 T 23-04-2016 RPE_RS03935 94d133c7126bcad28b406d79b6578b2a 276 PRINTS PR00207 Flagellin signature 75 94 1.1E-15 T 23-04-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 RPE_RS03935 94d133c7126bcad28b406d79b6578b2a 276 PRINTS PR00207 Flagellin signature 36 53 1.1E-15 T 23-04-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 RPE_RS03935 94d133c7126bcad28b406d79b6578b2a 276 PRINTS PR00207 Flagellin signature 110 133 1.1E-15 T 23-04-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 RPE_RS03935 94d133c7126bcad28b406d79b6578b2a 276 PANTHER PTHR30244 3 275 1.8E-68 T 23-04-2016 RPE_RS03935 94d133c7126bcad28b406d79b6578b2a 276 PANTHER PTHR30244:SF1 3 275 1.8E-68 T 23-04-2016 RPE_RS03935 94d133c7126bcad28b406d79b6578b2a 276 Pfam PF00669 Bacterial flagellin N-terminal helical region 4 141 1.2E-30 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RPE_RS03935 94d133c7126bcad28b406d79b6578b2a 276 Gene3D G3DSA:1.20.1330.10 55 231 4.1E-41 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RPE_RS10505 d3c39c5339df0caab1b557a24a8ef6e6 532 Gene3D G3DSA:1.20.1250.20 26 206 1.5E-26 T 23-04-2016 RPE_RS10505 d3c39c5339df0caab1b557a24a8ef6e6 532 SUPERFAMILY SSF103473 22 214 4.58E-60 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS10505 d3c39c5339df0caab1b557a24a8ef6e6 532 SUPERFAMILY SSF103473 269 440 4.58E-60 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS10505 d3c39c5339df0caab1b557a24a8ef6e6 532 SUPERFAMILY SSF103473 496 522 4.58E-60 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS10505 d3c39c5339df0caab1b557a24a8ef6e6 532 PANTHER PTHR23501 21 522 8.6E-236 T 23-04-2016 RPE_RS10505 d3c39c5339df0caab1b557a24a8ef6e6 532 PANTHER PTHR23501:SF51 21 522 8.6E-236 T 23-04-2016 RPE_RS10505 d3c39c5339df0caab1b557a24a8ef6e6 532 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 31 516 4.4E-133 T 23-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 RPE_RS10505 d3c39c5339df0caab1b557a24a8ef6e6 532 Pfam PF07690 Major Facilitator Superfamily 37 430 1.4E-40 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RPE_RS10505 d3c39c5339df0caab1b557a24a8ef6e6 532 Gene3D G3DSA:1.20.1250.20 279 441 1.7E-20 T 23-04-2016 RPE_RS10505 d3c39c5339df0caab1b557a24a8ef6e6 532 Gene3D G3DSA:1.20.1250.20 497 524 1.7E-20 T 23-04-2016 RPE_RS09720 467d870b8e976e99888b2dc062a77499 165 Pfam PF03918 Cytochrome C biogenesis protein 11 156 2.9E-53 T 23-04-2016 IPR005616 CcmH/CycL/Ccl2/NrfF family RPE_RS09720 467d870b8e976e99888b2dc062a77499 165 PANTHER PTHR30009 5 156 7.7E-25 T 23-04-2016 RPE_RS21595 233d8be68541d336c8d83071fdfa33be 202 SUPERFAMILY SSF140478 25 181 2.62E-51 T 23-04-2016 IPR023353 LemA-like domain RPE_RS21595 233d8be68541d336c8d83071fdfa33be 202 Pfam PF04011 LemA family 7 194 1.8E-62 T 23-04-2016 IPR007156 LemA RPE_RS21595 233d8be68541d336c8d83071fdfa33be 202 PANTHER PTHR34478:SF2 1 197 1.0E-92 T 23-04-2016 RPE_RS21595 233d8be68541d336c8d83071fdfa33be 202 PANTHER PTHR34478 1 197 1.0E-92 T 23-04-2016 RPE_RS21595 233d8be68541d336c8d83071fdfa33be 202 Gene3D G3DSA:1.20.1440.20 16 194 8.8E-61 T 23-04-2016 IPR023353 LemA-like domain RPE_RS24735 a97bcd807a62f792e25aa3e2024acd96 223 Pfam PF00561 alpha/beta hydrolase fold 20 142 1.1E-17 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS24735 a97bcd807a62f792e25aa3e2024acd96 223 PANTHER PTHR10992 7 119 1.2E-26 T 23-04-2016 RPE_RS24735 a97bcd807a62f792e25aa3e2024acd96 223 PRINTS PR00111 Alpha/beta hydrolase fold signature 47 62 5.1E-6 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS24735 a97bcd807a62f792e25aa3e2024acd96 223 PRINTS PR00111 Alpha/beta hydrolase fold signature 93 106 5.1E-6 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS24735 a97bcd807a62f792e25aa3e2024acd96 223 PRINTS PR00111 Alpha/beta hydrolase fold signature 107 120 5.1E-6 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS24735 a97bcd807a62f792e25aa3e2024acd96 223 PANTHER PTHR10992:SF771 7 119 1.2E-26 T 23-04-2016 RPE_RS24735 a97bcd807a62f792e25aa3e2024acd96 223 Gene3D G3DSA:3.40.50.1820 3 162 3.4E-34 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS24735 a97bcd807a62f792e25aa3e2024acd96 223 SUPERFAMILY SSF53474 1 200 3.3E-37 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS18140 56b50e47291c00c4fdad6207e63d5aa7 181 Pfam PF09860 Uncharacterized protein conserved in bacteria (DUF2087) 90 159 4.2E-24 T 23-04-2016 IPR018656 Domain of unknown function DUF2087 RPE_RS09045 0722fa61cc57d2841d06ba260027af6f 449 PANTHER PTHR11895:SF73 6 447 3.0E-144 T 23-04-2016 RPE_RS09045 0722fa61cc57d2841d06ba260027af6f 449 PANTHER PTHR11895 6 447 3.0E-144 T 23-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RPE_RS09045 0722fa61cc57d2841d06ba260027af6f 449 Gene3D G3DSA:3.90.1300.10 6 447 1.3E-113 T 23-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RPE_RS09045 0722fa61cc57d2841d06ba260027af6f 449 SUPERFAMILY SSF75304 6 447 1.31E-111 T 23-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RPE_RS09045 0722fa61cc57d2841d06ba260027af6f 449 Pfam PF01425 Amidase 26 436 2.1E-82 T 23-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RPE_RS23280 6bfaa3007b7a78f1e414e84053be3ef8 213 PANTHER PTHR30529 160 209 3.4E-33 T 23-04-2016 RPE_RS23280 6bfaa3007b7a78f1e414e84053be3ef8 213 PANTHER PTHR30529 6 134 3.4E-33 T 23-04-2016 RPE_RS23280 6bfaa3007b7a78f1e414e84053be3ef8 213 SUPERFAMILY SSF81342 9 131 5.1E-24 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 RPE_RS23280 6bfaa3007b7a78f1e414e84053be3ef8 213 SUPERFAMILY SSF81342 159 208 5.1E-24 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 RPE_RS23280 6bfaa3007b7a78f1e414e84053be3ef8 213 Pfam PF01292 Prokaryotic cytochrome b561 14 205 1.1E-22 T 23-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 RPE_RS23280 6bfaa3007b7a78f1e414e84053be3ef8 213 PANTHER PTHR30529:SF5 160 209 3.4E-33 T 23-04-2016 RPE_RS23280 6bfaa3007b7a78f1e414e84053be3ef8 213 PANTHER PTHR30529:SF5 6 134 3.4E-33 T 23-04-2016 RPE_RS02715 e0aa38fbdb8f7f3ddbebdef6909fdbb1 245 PANTHER PTHR26402:SF497 5 238 5.2E-144 T 23-04-2016 RPE_RS02715 e0aa38fbdb8f7f3ddbebdef6909fdbb1 245 Gene3D G3DSA:3.40.50.2300 2 125 1.7E-36 T 23-04-2016 RPE_RS02715 e0aa38fbdb8f7f3ddbebdef6909fdbb1 245 SMART SM00448 5 115 6.0E-36 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS02715 e0aa38fbdb8f7f3ddbebdef6909fdbb1 245 PANTHER PTHR26402 5 238 5.2E-144 T 23-04-2016 RPE_RS02715 e0aa38fbdb8f7f3ddbebdef6909fdbb1 245 SUPERFAMILY SSF46894 138 239 7.65E-22 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RPE_RS02715 e0aa38fbdb8f7f3ddbebdef6909fdbb1 245 Pfam PF00486 Transcriptional regulatory protein, C terminal 163 238 6.1E-20 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS02715 e0aa38fbdb8f7f3ddbebdef6909fdbb1 245 SMART SM00862 162 238 1.9E-20 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS02715 e0aa38fbdb8f7f3ddbebdef6909fdbb1 245 Pfam PF00072 Response regulator receiver domain 7 116 1.3E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS02715 e0aa38fbdb8f7f3ddbebdef6909fdbb1 245 SUPERFAMILY SSF52172 2 126 3.42E-37 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS02715 e0aa38fbdb8f7f3ddbebdef6909fdbb1 245 Gene3D G3DSA:1.10.10.10 139 240 3.3E-24 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS15780 0a3a03435fcacf55bddc6a8bf103e3fc 146 Pfam PF02472 Biopolymer transport protein ExbD/TolR 19 137 4.1E-25 T 23-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 RPE_RS15780 0a3a03435fcacf55bddc6a8bf103e3fc 146 PANTHER PTHR30558 1 146 1.2E-70 T 23-04-2016 RPE_RS15780 0a3a03435fcacf55bddc6a8bf103e3fc 146 PANTHER PTHR30558:SF9 1 146 1.2E-70 T 23-04-2016 RPE_RS15780 0a3a03435fcacf55bddc6a8bf103e3fc 146 TIGRFAM TIGR02803 ExbD_1: TonB system transport protein ExbD 19 140 2.7E-64 T 23-04-2016 IPR014170 TonB system transport protein ExbD type-1 GO:0006810|GO:0016020 RPE_RS22335 ed61bab01a5645865029d0350c53cbb2 82 SMART SM00530 14 69 2.2E-9 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RPE_RS22335 ed61bab01a5645865029d0350c53cbb2 82 Pfam PF01381 Helix-turn-helix 15 66 1.4E-10 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RPE_RS22335 ed61bab01a5645865029d0350c53cbb2 82 PANTHER PTHR10245:SF37 1 65 7.5E-13 T 23-04-2016 RPE_RS22335 ed61bab01a5645865029d0350c53cbb2 82 Gene3D G3DSA:1.10.260.40 9 68 9.6E-16 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS22335 ed61bab01a5645865029d0350c53cbb2 82 PANTHER PTHR10245 1 65 7.5E-13 T 23-04-2016 RPE_RS22335 ed61bab01a5645865029d0350c53cbb2 82 SUPERFAMILY SSF47413 4 73 1.02E-17 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS08175 4d55a5945d51ccd669fd7e709b292b71 349 PANTHER PTHR19353:SF27 16 341 1.2E-109 T 23-04-2016 RPE_RS08175 4d55a5945d51ccd669fd7e709b292b71 349 Pfam PF00487 Fatty acid desaturase 61 307 1.3E-32 T 23-04-2016 IPR005804 Fatty acid desaturase domain GO:0006629 RPE_RS08175 4d55a5945d51ccd669fd7e709b292b71 349 PANTHER PTHR19353 16 341 1.2E-109 T 23-04-2016 RPE_RS22990 7e6d47b7f9698365a4e9595dd3ae2533 420 Pfam PF13433 Periplasmic binding protein domain 57 417 2.0E-131 T 23-04-2016 RPE_RS22990 7e6d47b7f9698365a4e9595dd3ae2533 420 SUPERFAMILY SSF53822 55 415 5.72E-90 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RPE_RS22990 7e6d47b7f9698365a4e9595dd3ae2533 420 Gene3D G3DSA:3.40.50.2300 175 328 5.4E-18 T 23-04-2016 RPE_RS22990 7e6d47b7f9698365a4e9595dd3ae2533 420 PANTHER PTHR30483 1 420 7.7E-214 T 23-04-2016 RPE_RS22990 7e6d47b7f9698365a4e9595dd3ae2533 420 PANTHER PTHR30483:SF8 1 420 7.7E-214 T 23-04-2016 RPE_RS22990 7e6d47b7f9698365a4e9595dd3ae2533 420 Gene3D G3DSA:3.40.50.2300 329 386 8.4E-54 T 23-04-2016 RPE_RS22990 7e6d47b7f9698365a4e9595dd3ae2533 420 Gene3D G3DSA:3.40.50.2300 50 174 8.4E-54 T 23-04-2016 RPE_RS22990 7e6d47b7f9698365a4e9595dd3ae2533 420 TIGRFAM TIGR03407 urea_ABC_UrtA: urea ABC transporter, urea binding protein 56 415 1.5E-164 T 23-04-2016 IPR017777 ABC transporter, urea, substrate-binding, UrtA RPE_RS21700 e68fccec132629999418b464393c9904 248 TIGRFAM TIGR02594 TIGR02594: TIGR02594 family protein 155 247 9.8E-33 T 23-04-2016 IPR013423 Conserved hypothetical protein CHP02594 RPE_RS21700 e68fccec132629999418b464393c9904 248 SUPERFAMILY SSF54001 143 228 2.35E-8 T 23-04-2016 RPE_RS21700 e68fccec132629999418b464393c9904 248 Pfam PF05257 CHAP domain 156 227 1.9E-8 T 23-04-2016 IPR007921 CHAP domain RPE_RS21700 e68fccec132629999418b464393c9904 248 Gene3D G3DSA:3.90.1720.10 138 220 3.3E-4 T 23-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RPE_RS19940 669feeb7ac965ee3756beabe32239695 363 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 62 272 1.7E-22 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RPE_RS19940 669feeb7ac965ee3756beabe32239695 363 SUPERFAMILY SSF111369 51 276 1.57E-22 T 23-04-2016 RPE_RS19940 669feeb7ac965ee3756beabe32239695 363 Gene3D G3DSA:2.40.50.100 72 95 1.6E-11 T 23-04-2016 RPE_RS19940 669feeb7ac965ee3756beabe32239695 363 Gene3D G3DSA:2.40.50.100 169 201 1.6E-11 T 23-04-2016 RPE_RS19940 669feeb7ac965ee3756beabe32239695 363 PANTHER PTHR30469:SF15 34 363 2.0E-64 T 23-04-2016 RPE_RS19940 669feeb7ac965ee3756beabe32239695 363 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 40 353 1.7E-59 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RPE_RS19940 669feeb7ac965ee3756beabe32239695 363 PANTHER PTHR30469 34 363 2.0E-64 T 23-04-2016 RPE_RS19095 82a3b45d5b0bbb866f4040f7100088f2 222 Gene3D G3DSA:2.60.120.10 84 202 3.2E-17 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS19095 82a3b45d5b0bbb866f4040f7100088f2 222 SMART SM00100 78 190 2.5E-7 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RPE_RS19095 82a3b45d5b0bbb866f4040f7100088f2 222 SUPERFAMILY SSF51206 87 202 4.06E-19 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like RPE_RS19095 82a3b45d5b0bbb866f4040f7100088f2 222 Pfam PF00027 Cyclic nucleotide-binding domain 98 178 2.4E-9 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RPE_RS20265 92a6c99477092131f0bcd9939e9957e1 582 Pfam PF13175 AAA ATPase domain 245 329 6.7E-17 T 23-04-2016 RPE_RS20265 92a6c99477092131f0bcd9939e9957e1 582 Pfam PF13175 AAA ATPase domain 1 46 2.7E-8 T 23-04-2016 RPE_RS20265 92a6c99477092131f0bcd9939e9957e1 582 Gene3D G3DSA:3.40.50.300 1 76 2.4E-14 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS20265 92a6c99477092131f0bcd9939e9957e1 582 SUPERFAMILY SSF52540 1 342 7.02E-20 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS20265 92a6c99477092131f0bcd9939e9957e1 582 Gene3D G3DSA:3.40.50.300 222 342 6.1E-10 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10055 76a847d9368e496c400d7e0df35ae9d7 514 Gene3D G3DSA:3.40.50.970 333 514 8.6E-40 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS10055 76a847d9368e496c400d7e0df35ae9d7 514 SUPERFAMILY SSF52518 1 169 6.38E-38 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS10055 76a847d9368e496c400d7e0df35ae9d7 514 Gene3D G3DSA:3.40.50.970 1 172 2.6E-44 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS10055 76a847d9368e496c400d7e0df35ae9d7 514 PANTHER PTHR18968:SF86 1 514 3.1E-176 T 23-04-2016 RPE_RS10055 76a847d9368e496c400d7e0df35ae9d7 514 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 2 167 4.8E-35 T 23-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RPE_RS10055 76a847d9368e496c400d7e0df35ae9d7 514 SUPERFAMILY SSF52518 337 514 4.34E-39 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS10055 76a847d9368e496c400d7e0df35ae9d7 514 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 378 511 6.5E-26 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RPE_RS10055 76a847d9368e496c400d7e0df35ae9d7 514 PANTHER PTHR18968 1 514 3.1E-176 T 23-04-2016 RPE_RS13800 e009ca323e847ddb1698135c96ecd33c 465 PANTHER PTHR30026:SF3 15 455 1.0E-120 T 23-04-2016 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 RPE_RS13800 e009ca323e847ddb1698135c96ecd33c 465 Pfam PF02321 Outer membrane efflux protein 34 225 3.2E-32 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RPE_RS13800 e009ca323e847ddb1698135c96ecd33c 465 Pfam PF02321 Outer membrane efflux protein 245 424 1.7E-30 T 23-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RPE_RS13800 e009ca323e847ddb1698135c96ecd33c 465 PANTHER PTHR30026 15 455 1.0E-120 T 23-04-2016 RPE_RS13800 e009ca323e847ddb1698135c96ecd33c 465 SUPERFAMILY SSF56954 15 432 1.83E-84 T 23-04-2016 RPE_RS13800 e009ca323e847ddb1698135c96ecd33c 465 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 30 444 1.3E-98 T 23-04-2016 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 RPE_RS13800 e009ca323e847ddb1698135c96ecd33c 465 Gene3D G3DSA:1.20.1600.10 28 432 1.5E-71 T 23-04-2016 RPE_RS08910 67e6652799fcec9a0e200518628b35f1 168 SUPERFAMILY SSF55797 49 160 3.14E-14 T 23-04-2016 IPR014044 CAP domain RPE_RS08910 67e6652799fcec9a0e200518628b35f1 168 Pfam PF00188 Cysteine-rich secretory protein family 49 161 4.9E-15 T 23-04-2016 IPR014044 CAP domain RPE_RS08910 67e6652799fcec9a0e200518628b35f1 168 Gene3D G3DSA:3.40.33.10 45 156 3.4E-6 T 23-04-2016 IPR014044 CAP domain RPE_RS08910 67e6652799fcec9a0e200518628b35f1 168 PANTHER PTHR31157 44 168 6.5E-24 T 23-04-2016 RPE_RS01745 1d595d6640b0c834d6b8fca436490e66 380 Gene3D G3DSA:2.10.230.10 143 211 1.0E-22 T 23-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 RPE_RS01745 1d595d6640b0c834d6b8fca436490e66 380 PRINTS PR00625 DnaJ domain signature 44 64 1.2E-27 T 23-04-2016 IPR001623 DnaJ domain RPE_RS01745 1d595d6640b0c834d6b8fca436490e66 380 PRINTS PR00625 DnaJ domain signature 64 83 1.2E-27 T 23-04-2016 IPR001623 DnaJ domain RPE_RS01745 1d595d6640b0c834d6b8fca436490e66 380 PRINTS PR00625 DnaJ domain signature 27 42 1.2E-27 T 23-04-2016 IPR001623 DnaJ domain RPE_RS01745 1d595d6640b0c834d6b8fca436490e66 380 PRINTS PR00625 DnaJ domain signature 9 27 1.2E-27 T 23-04-2016 IPR001623 DnaJ domain RPE_RS01745 1d595d6640b0c834d6b8fca436490e66 380 PANTHER PTHR24078:SF231 1 353 3.5E-154 T 23-04-2016 RPE_RS01745 1d595d6640b0c834d6b8fca436490e66 380 SUPERFAMILY SSF57938 136 212 4.71E-21 T 23-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 RPE_RS01745 1d595d6640b0c834d6b8fca436490e66 380 ProSitePatterns PS00636 Nt-dnaJ domain signature. 49 68 - T 23-04-2016 IPR018253 DnaJ domain, conserved site RPE_RS01745 1d595d6640b0c834d6b8fca436490e66 380 Gene3D G3DSA:1.10.287.110 5 105 2.5E-33 T 23-04-2016 IPR001623 DnaJ domain RPE_RS01745 1d595d6640b0c834d6b8fca436490e66 380 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 8 352 4.0E-128 T 23-04-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 RPE_RS01745 1d595d6640b0c834d6b8fca436490e66 380 Gene3D G3DSA:2.60.260.20 258 337 1.9E-23 T 23-04-2016 RPE_RS01745 1d595d6640b0c834d6b8fca436490e66 380 SUPERFAMILY SSF49493 260 347 5.62E-23 T 23-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RPE_RS01745 1d595d6640b0c834d6b8fca436490e66 380 Pfam PF01556 DnaJ C terminal domain 123 336 2.1E-41 T 23-04-2016 IPR002939 Chaperone DnaJ, C-terminal RPE_RS01745 1d595d6640b0c834d6b8fca436490e66 380 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 4 372 39.91 T 23-04-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 RPE_RS01745 1d595d6640b0c834d6b8fca436490e66 380 Gene3D G3DSA:2.60.260.20 110 142 1.0E-23 T 23-04-2016 RPE_RS01745 1d595d6640b0c834d6b8fca436490e66 380 Gene3D G3DSA:2.60.260.20 212 255 1.0E-23 T 23-04-2016 RPE_RS01745 1d595d6640b0c834d6b8fca436490e66 380 Pfam PF00226 DnaJ domain 8 69 2.0E-25 T 23-04-2016 IPR001623 DnaJ domain RPE_RS01745 1d595d6640b0c834d6b8fca436490e66 380 SUPERFAMILY SSF46565 6 108 1.57E-32 T 23-04-2016 IPR001623 DnaJ domain RPE_RS01745 1d595d6640b0c834d6b8fca436490e66 380 Pfam PF00684 DnaJ central domain 149 209 2.1E-12 T 23-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 RPE_RS01745 1d595d6640b0c834d6b8fca436490e66 380 PANTHER PTHR24078 1 353 3.5E-154 T 23-04-2016 RPE_RS01745 1d595d6640b0c834d6b8fca436490e66 380 SUPERFAMILY SSF49493 116 140 1.09E-18 T 23-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RPE_RS01745 1d595d6640b0c834d6b8fca436490e66 380 SUPERFAMILY SSF49493 215 263 1.09E-18 T 23-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RPE_RS01745 1d595d6640b0c834d6b8fca436490e66 380 SMART SM00271 6 64 1.5E-30 T 23-04-2016 IPR001623 DnaJ domain RPE_RS00150 4b4bf05e41f435957efd578552255c66 126 Gene3D G3DSA:1.10.260.40 27 84 1.4E-6 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS00150 4b4bf05e41f435957efd578552255c66 126 Pfam PF09722 Protein of unknown function (DUF2384) 75 123 1.7E-10 T 23-04-2016 IPR024467 Domain of unknown function DUF2384 RPE_RS00150 4b4bf05e41f435957efd578552255c66 126 SUPERFAMILY SSF47413 25 78 1.13E-7 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS23600 7fb3874fe9899376eda480a6d044dec4 85 Pfam PF11455 Protein of unknown function (DUF3018) 22 84 4.4E-20 T 23-04-2016 IPR021558 Protein of unknown function DUF3018 RPE_RS16225 6aa759b4775d1cdcdc45cea5d07c6b1b 4586 PANTHER PTHR12338 28 690 1.8E-37 T 23-04-2016 RPE_RS16225 6aa759b4775d1cdcdc45cea5d07c6b1b 4586 PANTHER PTHR12338:SF6 28 690 1.8E-37 T 23-04-2016 RPE_RS16225 6aa759b4775d1cdcdc45cea5d07c6b1b 4586 Pfam PF05860 haemagglutination activity domain 98 187 5.9E-20 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal RPE_RS16225 6aa759b4775d1cdcdc45cea5d07c6b1b 4586 SUPERFAMILY SSF51126 226 367 8.79E-27 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor RPE_RS16225 6aa759b4775d1cdcdc45cea5d07c6b1b 4586 SUPERFAMILY SSF51126 102 198 8.79E-27 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor RPE_RS16225 6aa759b4775d1cdcdc45cea5d07c6b1b 4586 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 113 187 9.0E-22 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal RPE_RS16225 6aa759b4775d1cdcdc45cea5d07c6b1b 4586 SMART SM00912 78 192 1.6E-27 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal RPE_RS16225 6aa759b4775d1cdcdc45cea5d07c6b1b 4586 Pfam PF12545 Filamentous haemagglutinin family outer membrane protein 4372 4482 3.0E-36 T 23-04-2016 IPR021026 Filamentous haemagglutinin family outer membrane protein, domain of unknown function DUF3739 RPE_RS07040 8663059f58451e917912ba208e271778 299 Pfam PF00149 Calcineurin-like phosphoesterase 4 226 1.0E-14 T 23-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 RPE_RS07040 8663059f58451e917912ba208e271778 299 PANTHER PTHR12905 22 226 2.2E-39 T 23-04-2016 RPE_RS07040 8663059f58451e917912ba208e271778 299 Gene3D G3DSA:3.60.21.10 4 268 3.6E-34 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RPE_RS07040 8663059f58451e917912ba208e271778 299 SUPERFAMILY SSF56300 4 273 6.57E-39 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RPE_RS07040 8663059f58451e917912ba208e271778 299 PANTHER PTHR12905:SF17 22 226 2.2E-39 T 23-04-2016 RPE_RS22285 5ce5f4523ba67edc5eb91275909fa1fb 335 SUPERFAMILY SSF53850 122 295 2.2E-8 T 23-04-2016 RPE_RS22285 5ce5f4523ba67edc5eb91275909fa1fb 335 PANTHER PTHR30349:SF16 10 321 1.9E-105 T 23-04-2016 RPE_RS22285 5ce5f4523ba67edc5eb91275909fa1fb 335 PIRSF PIRSF017082 3 334 3.1E-75 T 23-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RPE_RS22285 5ce5f4523ba67edc5eb91275909fa1fb 335 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 58 328 1.0E-80 T 23-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RPE_RS22285 5ce5f4523ba67edc5eb91275909fa1fb 335 PANTHER PTHR30349 10 321 1.9E-105 T 23-04-2016 RPE_RS09290 46149e2f6f462e44f6efd0f09549cba3 219 Gene3D G3DSA:3.40.630.20 6 210 5.8E-42 T 23-04-2016 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like RPE_RS09290 46149e2f6f462e44f6efd0f09549cba3 219 PANTHER PTHR23402 4 213 3.8E-38 T 23-04-2016 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like RPE_RS09290 46149e2f6f462e44f6efd0f09549cba3 219 PIRSF PIRSF015592 4 218 9.4E-43 T 23-04-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 RPE_RS09290 46149e2f6f462e44f6efd0f09549cba3 219 PANTHER PTHR23402:SF1 4 213 3.8E-38 T 23-04-2016 RPE_RS09290 46149e2f6f462e44f6efd0f09549cba3 219 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 137 153 7.8E-14 T 23-04-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 RPE_RS09290 46149e2f6f462e44f6efd0f09549cba3 219 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 68 80 7.8E-14 T 23-04-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 RPE_RS09290 46149e2f6f462e44f6efd0f09549cba3 219 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 7 30 7.8E-14 T 23-04-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 RPE_RS09290 46149e2f6f462e44f6efd0f09549cba3 219 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 167 179 7.8E-14 T 23-04-2016 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 RPE_RS09290 46149e2f6f462e44f6efd0f09549cba3 219 SUPERFAMILY SSF53182 5 209 4.71E-50 T 23-04-2016 RPE_RS09290 46149e2f6f462e44f6efd0f09549cba3 219 Pfam PF01470 Pyroglutamyl peptidase 6 178 2.8E-22 T 23-04-2016 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like RPE_RS23580 d86e242c80e3bc54538466e2e2a0be69 386 SMART SM00671 140 175 6.2E-11 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS23580 d86e242c80e3bc54538466e2e2a0be69 386 SMART SM00671 248 283 1.7E-8 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS23580 d86e242c80e3bc54538466e2e2a0be69 386 SMART SM00671 176 211 2.5 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS23580 d86e242c80e3bc54538466e2e2a0be69 386 SMART SM00671 284 319 0.006 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS23580 d86e242c80e3bc54538466e2e2a0be69 386 SMART SM00671 320 357 260.0 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS23580 d86e242c80e3bc54538466e2e2a0be69 386 SMART SM00671 212 247 5.4E-7 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS23580 d86e242c80e3bc54538466e2e2a0be69 386 SUPERFAMILY SSF81901 117 356 4.71E-49 T 23-04-2016 RPE_RS23580 d86e242c80e3bc54538466e2e2a0be69 386 PANTHER PTHR11102 118 354 3.1E-63 T 23-04-2016 RPE_RS23580 d86e242c80e3bc54538466e2e2a0be69 386 Gene3D G3DSA:1.25.40.10 117 356 1.4E-58 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS23580 d86e242c80e3bc54538466e2e2a0be69 386 Pfam PF08238 Sel1 repeat 248 279 5.6E-6 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS23580 d86e242c80e3bc54538466e2e2a0be69 386 Pfam PF08238 Sel1 repeat 287 319 0.0011 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS23580 d86e242c80e3bc54538466e2e2a0be69 386 Pfam PF08238 Sel1 repeat 177 211 0.0011 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS23580 d86e242c80e3bc54538466e2e2a0be69 386 Pfam PF08238 Sel1 repeat 140 175 1.7E-10 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS23580 d86e242c80e3bc54538466e2e2a0be69 386 Pfam PF08238 Sel1 repeat 212 247 3.7E-5 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS23580 d86e242c80e3bc54538466e2e2a0be69 386 Pfam PF08238 Sel1 repeat 321 346 36.0 T 23-04-2016 IPR006597 Sel1-like repeat RPE_RS23580 d86e242c80e3bc54538466e2e2a0be69 386 PANTHER PTHR11102:SF11 118 354 3.1E-63 T 23-04-2016 RPE_RS24255 2bde8cc75c155d604e90ce9aba49aae8 220 SUPERFAMILY SSF48150 37 204 1.54E-34 T 23-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RPE_RS24255 2bde8cc75c155d604e90ce9aba49aae8 220 SMART SM00478 52 203 1.2E-5 T 23-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 RPE_RS24255 2bde8cc75c155d604e90ce9aba49aae8 220 Gene3D G3DSA:1.10.340.30 44 151 8.3E-23 T 23-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RPE_RS24255 2bde8cc75c155d604e90ce9aba49aae8 220 Gene3D G3DSA:1.10.1670.10 153 206 5.6E-12 T 23-04-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal RPE_RS24255 2bde8cc75c155d604e90ce9aba49aae8 220 PANTHER PTHR10242 7 210 5.6E-42 T 23-04-2016 RPE_RS24255 2bde8cc75c155d604e90ce9aba49aae8 220 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 49 190 7.4E-10 T 23-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 RPE_RS06745 4ceb0faac4dc0f5af7658a357732d83a 162 PIRSF PIRSF005859 1 159 1.2E-39 T 23-04-2016 IPR004307 TspO/MBR-related protein GO:0016021 RPE_RS06745 4ceb0faac4dc0f5af7658a357732d83a 162 Pfam PF03073 TspO/MBR family 14 155 8.9E-35 T 23-04-2016 IPR004307 TspO/MBR-related protein GO:0016021 RPE_RS06745 4ceb0faac4dc0f5af7658a357732d83a 162 PANTHER PTHR10057 1 158 1.3E-26 T 23-04-2016 IPR004307 TspO/MBR-related protein GO:0016021 RPE_RS18845 1c5e58ac52cba036121db69e96ebef5e 184 Gene3D G3DSA:1.10.760.10 72 174 9.6E-39 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS18845 1c5e58ac52cba036121db69e96ebef5e 184 Pfam PF00034 Cytochrome c 75 172 7.6E-9 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS18845 1c5e58ac52cba036121db69e96ebef5e 184 PRINTS PR00604 Class IA and IB cytochrome C signature 127 143 1.6E-19 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RPE_RS18845 1c5e58ac52cba036121db69e96ebef5e 184 PRINTS PR00604 Class IA and IB cytochrome C signature 84 91 1.6E-19 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RPE_RS18845 1c5e58ac52cba036121db69e96ebef5e 184 PRINTS PR00604 Class IA and IB cytochrome C signature 146 156 1.6E-19 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RPE_RS18845 1c5e58ac52cba036121db69e96ebef5e 184 PRINTS PR00604 Class IA and IB cytochrome C signature 163 171 1.6E-19 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RPE_RS18845 1c5e58ac52cba036121db69e96ebef5e 184 PRINTS PR00604 Class IA and IB cytochrome C signature 113 123 1.6E-19 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RPE_RS18845 1c5e58ac52cba036121db69e96ebef5e 184 PRINTS PR00604 Class IA and IB cytochrome C signature 97 112 1.6E-19 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RPE_RS18845 1c5e58ac52cba036121db69e96ebef5e 184 PANTHER PTHR11961 1 182 3.1E-40 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RPE_RS18845 1c5e58ac52cba036121db69e96ebef5e 184 SUPERFAMILY SSF46626 72 175 3.76E-33 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS13730 e1524eac6d10836dcceb10971285b7d3 275 PANTHER PTHR33973 1 254 5.9E-58 T 23-04-2016 RPE_RS13730 e1524eac6d10836dcceb10971285b7d3 275 Pfam PF07103 Protein of unknown function (DUF1365) 13 255 3.4E-67 T 23-04-2016 IPR010775 Protein of unknown function DUF1365 RPE_RS04260 8e5935faeada711feb041273c7b39ad0 26 Hamap MF_00656 Coenzyme PQQ synthesis protein A [pqqA]. 2 24 10.748 T 23-04-2016 IPR011725 Coenzyme PQQ biosynthesis protein A GO:0018189 UniPathway: UPA00539 RPE_RS04260 8e5935faeada711feb041273c7b39ad0 26 TIGRFAM TIGR02107 PQQ_syn_pqqA: coenzyme PQQ precursor peptide PqqA 3 23 1.4E-11 T 23-04-2016 IPR011725 Coenzyme PQQ biosynthesis protein A GO:0018189 UniPathway: UPA00539 RPE_RS04260 8e5935faeada711feb041273c7b39ad0 26 Pfam PF08042 PqqA family 2 20 4.9E-10 T 23-04-2016 IPR011725 Coenzyme PQQ biosynthesis protein A GO:0018189 UniPathway: UPA00539 RPE_RS11255 ef9cad2f3d18cb5cec02fbd739e304a4 286 Gene3D G3DSA:3.90.226.10 116 265 1.2E-12 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS11255 ef9cad2f3d18cb5cec02fbd739e304a4 286 SUPERFAMILY SSF52096 107 265 6.16E-22 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS23630 e5991526c9ea5f5bac938c1797132351 123 Pfam PF13747 Domain of unknown function (DUF4164) 13 99 4.5E-29 T 23-04-2016 IPR025310 Protein of unknown function DUF4164 RPE_RS05820 53bd11ccf3b1847ef1c086fb57c52c75 257 SUPERFAMILY SSF158837 1 222 4.84E-79 T 23-04-2016 IPR023157 AGR-C-984p-like domain RPE_RS05820 53bd11ccf3b1847ef1c086fb57c52c75 257 Gene3D G3DSA:1.10.3700.10 1 222 3.3E-91 T 23-04-2016 IPR023157 AGR-C-984p-like domain RPE_RS05820 53bd11ccf3b1847ef1c086fb57c52c75 257 Pfam PF06748 Protein of unknown function (DUF1217) 61 209 2.6E-57 T 23-04-2016 IPR010626 Protein of unknown function DUF1217 RPE_RS00905 cf84d43c54570c3d3f0a866fdacb0b6b 563 SMART SM00267 124 297 4.8E-30 T 23-04-2016 IPR000160 GGDEF domain RPE_RS00905 cf84d43c54570c3d3f0a866fdacb0b6b 563 SUPERFAMILY SSF141868 314 555 2.35E-89 T 23-04-2016 IPR001633 EAL domain RPE_RS00905 cf84d43c54570c3d3f0a866fdacb0b6b 563 Pfam PF00563 EAL domain 314 544 2.6E-73 T 23-04-2016 IPR001633 EAL domain RPE_RS00905 cf84d43c54570c3d3f0a866fdacb0b6b 563 PANTHER PTHR33121:SF13 257 557 1.6E-87 T 23-04-2016 RPE_RS00905 cf84d43c54570c3d3f0a866fdacb0b6b 563 Gene3D G3DSA:3.20.20.450 311 555 5.7E-97 T 23-04-2016 IPR001633 EAL domain RPE_RS00905 cf84d43c54570c3d3f0a866fdacb0b6b 563 SMART SM00052 307 549 2.5E-111 T 23-04-2016 IPR001633 EAL domain RPE_RS00905 cf84d43c54570c3d3f0a866fdacb0b6b 563 Pfam PF00990 Diguanylate cyclase, GGDEF domain 136 291 1.3E-31 T 23-04-2016 IPR000160 GGDEF domain RPE_RS00905 cf84d43c54570c3d3f0a866fdacb0b6b 563 PANTHER PTHR33121 257 557 1.6E-87 T 23-04-2016 RPE_RS00905 cf84d43c54570c3d3f0a866fdacb0b6b 563 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 134 295 2.0E-25 T 23-04-2016 IPR000160 GGDEF domain RPE_RS00905 cf84d43c54570c3d3f0a866fdacb0b6b 563 SUPERFAMILY SSF55073 141 298 1.41E-34 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS00905 cf84d43c54570c3d3f0a866fdacb0b6b 563 Gene3D G3DSA:3.30.70.270 137 305 3.0E-41 T 23-04-2016 RPE_RS21290 9b1ab8f968f3622732682bcfcd57401b 323 SUPERFAMILY SSF51735 2 320 1.13E-75 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS21290 9b1ab8f968f3622732682bcfcd57401b 323 TIGRFAM TIGR01472 gmd: GDP-mannose 4,6-dehydratase 2 320 1.8E-125 T 23-04-2016 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|UniPathway: UPA00128 RPE_RS21290 9b1ab8f968f3622732682bcfcd57401b 323 PANTHER PTHR10366:SF32 3 321 4.9E-181 T 23-04-2016 RPE_RS21290 9b1ab8f968f3622732682bcfcd57401b 323 Hamap MF_00955 GDP-mannose 4,6-dehydratase [gmd]. 2 323 51.924 T 23-04-2016 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|UniPathway: UPA00128 RPE_RS21290 9b1ab8f968f3622732682bcfcd57401b 323 PANTHER PTHR10366 3 321 4.9E-181 T 23-04-2016 RPE_RS21290 9b1ab8f968f3622732682bcfcd57401b 323 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 313 6.8E-122 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS21290 9b1ab8f968f3622732682bcfcd57401b 323 Gene3D G3DSA:3.90.25.10 188 322 2.0E-46 T 23-04-2016 RPE_RS21290 9b1ab8f968f3622732682bcfcd57401b 323 Gene3D G3DSA:3.40.50.720 1 184 5.6E-39 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS13325 0366b352f0305121f08753fe27bd1153 4458 Pfam PF05860 haemagglutination activity domain 56 160 1.0E-18 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal RPE_RS13325 0366b352f0305121f08753fe27bd1153 4458 SMART SM00912 47 164 1.0E-27 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal RPE_RS13325 0366b352f0305121f08753fe27bd1153 4458 Pfam PF12545 Filamentous haemagglutinin family outer membrane protein 4241 4353 1.3E-24 T 23-04-2016 IPR021026 Filamentous haemagglutinin family outer membrane protein, domain of unknown function DUF3739 RPE_RS13325 0366b352f0305121f08753fe27bd1153 4458 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 84 159 4.1E-20 T 23-04-2016 IPR008638 Filamentous haemagglutinin, N-terminal RPE_RS13325 0366b352f0305121f08753fe27bd1153 4458 SUPERFAMILY SSF51126 413 436 5.34E-18 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor RPE_RS13325 0366b352f0305121f08753fe27bd1153 4458 SUPERFAMILY SSF51126 70 170 5.34E-18 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor RPE_RS13325 0366b352f0305121f08753fe27bd1153 4458 SUPERFAMILY SSF51126 248 365 5.34E-18 T 23-04-2016 IPR011050 Pectin lyase fold/virulence factor RPE_RS13325 0366b352f0305121f08753fe27bd1153 4458 Gene3D G3DSA:2.160.20.10 234 296 8.8E-13 T 23-04-2016 IPR012334 Pectin lyase fold RPE_RS13325 0366b352f0305121f08753fe27bd1153 4458 Gene3D G3DSA:2.160.20.10 70 174 8.8E-13 T 23-04-2016 IPR012334 Pectin lyase fold RPE_RS13325 0366b352f0305121f08753fe27bd1153 4458 PANTHER PTHR12338 254 365 6.3E-25 T 23-04-2016 RPE_RS13325 0366b352f0305121f08753fe27bd1153 4458 PANTHER PTHR12338 1 205 6.3E-25 T 23-04-2016 RPE_RS13325 0366b352f0305121f08753fe27bd1153 4458 PANTHER PTHR12338:SF6 254 365 6.3E-25 T 23-04-2016 RPE_RS13325 0366b352f0305121f08753fe27bd1153 4458 PANTHER PTHR12338:SF6 1 205 6.3E-25 T 23-04-2016 RPE_RS09565 c09f3473929b5890a357c629fe4ca68f 152 PANTHER PTHR33217 1 137 8.4E-43 T 23-04-2016 RPE_RS09565 c09f3473929b5890a357c629fe4ca68f 152 PANTHER PTHR33217:SF2 1 137 8.4E-43 T 23-04-2016 RPE_RS09565 c09f3473929b5890a357c629fe4ca68f 152 Pfam PF00872 Transposase, Mutator family 1 124 2.1E-37 T 23-04-2016 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 RPE_RS21040 b349eea322a7618a108eb1292185ef02 250 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 225 245 8.3E-7 T 23-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RPE_RS21040 b349eea322a7618a108eb1292185ef02 250 Gene3D G3DSA:3.40.50.300 2 244 5.2E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS21040 b349eea322a7618a108eb1292185ef02 250 Pfam PF00005 ABC transporter 21 175 3.0E-25 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS21040 b349eea322a7618a108eb1292185ef02 250 SMART SM00382 29 223 3.1E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS21040 b349eea322a7618a108eb1292185ef02 250 PANTHER PTHR24220:SF358 6 249 1.0E-104 T 23-04-2016 RPE_RS21040 b349eea322a7618a108eb1292185ef02 250 SUPERFAMILY SSF52540 3 245 3.42E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS21040 b349eea322a7618a108eb1292185ef02 250 PANTHER PTHR24220 6 249 1.0E-104 T 23-04-2016 RPE_RS18260 3441482a215ade8348a6db50b0d7dfe3 286 Gene3D G3DSA:3.40.50.720 39 282 4.2E-81 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS18260 3441482a215ade8348a6db50b0d7dfe3 286 SUPERFAMILY SSF51735 43 282 6.76E-78 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS18260 3441482a215ade8348a6db50b0d7dfe3 286 PANTHER PTHR24322:SF105 48 176 1.3E-63 T 23-04-2016 RPE_RS18260 3441482a215ade8348a6db50b0d7dfe3 286 PANTHER PTHR24322:SF105 192 224 1.3E-63 T 23-04-2016 RPE_RS18260 3441482a215ade8348a6db50b0d7dfe3 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 120 131 3.5E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18260 3441482a215ade8348a6db50b0d7dfe3 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 192 211 3.5E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18260 3441482a215ade8348a6db50b0d7dfe3 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 172 180 3.5E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18260 3441482a215ade8348a6db50b0d7dfe3 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 45 62 1.7E-33 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18260 3441482a215ade8348a6db50b0d7dfe3 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 230 1.7E-33 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18260 3441482a215ade8348a6db50b0d7dfe3 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 192 211 1.7E-33 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18260 3441482a215ade8348a6db50b0d7dfe3 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 247 267 1.7E-33 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18260 3441482a215ade8348a6db50b0d7dfe3 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 131 1.7E-33 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18260 3441482a215ade8348a6db50b0d7dfe3 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 182 1.7E-33 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18260 3441482a215ade8348a6db50b0d7dfe3 286 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 179 207 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RPE_RS18260 3441482a215ade8348a6db50b0d7dfe3 286 PANTHER PTHR24322 48 176 1.3E-63 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18260 3441482a215ade8348a6db50b0d7dfe3 286 PANTHER PTHR24322 192 224 1.3E-63 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18260 3441482a215ade8348a6db50b0d7dfe3 286 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 53 282 3.6E-60 T 23-04-2016 RPE_RS14180 625585fac6a4c2c2195b6564398412be 183 PIRSF PIRSF032079 3 181 3.1E-65 T 23-04-2016 IPR014569 Ubiquinol-cytochrome c chaperone, CBP3-related RPE_RS14180 625585fac6a4c2c2195b6564398412be 183 PANTHER PTHR12184:SF2 1 177 1.2E-56 T 23-04-2016 RPE_RS14180 625585fac6a4c2c2195b6564398412be 183 Pfam PF03981 Ubiquinol-cytochrome C chaperone 37 176 1.2E-44 T 23-04-2016 IPR021150 Ubiquinol-cytochrome c chaperone/UPF0174 RPE_RS14180 625585fac6a4c2c2195b6564398412be 183 PANTHER PTHR12184 1 177 1.2E-56 T 23-04-2016 IPR007129 Ubiquinol-cytochrome c chaperone, CBP3 RPE_RS13085 0472b94a04f2b769c62f87772d5279bf 203 PANTHER PTHR30086 1 203 4.5E-61 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RPE_RS13085 0472b94a04f2b769c62f87772d5279bf 203 Pfam PF01810 LysE type translocator 10 200 7.0E-35 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RPE_RS13085 0472b94a04f2b769c62f87772d5279bf 203 PIRSF PIRSF006324 1 203 6.9E-47 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RPE_RS13085 0472b94a04f2b769c62f87772d5279bf 203 PANTHER PTHR30086:SF3 1 203 4.5E-61 T 23-04-2016 RPE_RS07920 66c78cbae2c533248519a4ba20d70f91 467 PANTHER PTHR10543 11 464 5.6E-153 T 23-04-2016 IPR004294 Carotenoid oxygenase GO:0016702|GO:0055114 RPE_RS07920 66c78cbae2c533248519a4ba20d70f91 467 PANTHER PTHR10543:SF37 11 464 5.6E-153 T 23-04-2016 RPE_RS07920 66c78cbae2c533248519a4ba20d70f91 467 Pfam PF03055 Retinal pigment epithelial membrane protein 15 464 4.7E-109 T 23-04-2016 IPR004294 Carotenoid oxygenase GO:0016702|GO:0055114 RPE_RS05080 84bef351ccbe08762defac18583c41fa 452 SUPERFAMILY SSF111369 74 152 9.81E-5 T 23-04-2016 RPE_RS05080 84bef351ccbe08762defac18583c41fa 452 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 36 452 1.8E-104 T 23-04-2016 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 RPE_RS05080 84bef351ccbe08762defac18583c41fa 452 Pfam PF13437 HlyD family secretion protein 304 407 1.4E-14 T 23-04-2016 RPE_RS05080 84bef351ccbe08762defac18583c41fa 452 Pfam PF13533 Biotin-lipoyl like 83 120 4.6E-8 T 23-04-2016 RPE_RS05080 84bef351ccbe08762defac18583c41fa 452 PANTHER PTHR30386:SF3 1 128 9.1E-97 T 23-04-2016 RPE_RS05080 84bef351ccbe08762defac18583c41fa 452 PANTHER PTHR30386:SF3 163 452 9.1E-97 T 23-04-2016 RPE_RS05080 84bef351ccbe08762defac18583c41fa 452 PANTHER PTHR30386 1 128 9.1E-97 T 23-04-2016 RPE_RS05080 84bef351ccbe08762defac18583c41fa 452 PANTHER PTHR30386 163 452 9.1E-97 T 23-04-2016 RPE_RS05080 84bef351ccbe08762defac18583c41fa 452 Gene3D G3DSA:2.40.50.100 301 336 4.6E-15 T 23-04-2016 RPE_RS05080 84bef351ccbe08762defac18583c41fa 452 Gene3D G3DSA:2.40.50.100 76 107 4.6E-15 T 23-04-2016 RPE_RS05080 84bef351ccbe08762defac18583c41fa 452 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 416 431 1.8E-42 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RPE_RS05080 84bef351ccbe08762defac18583c41fa 452 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 431 451 1.8E-42 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RPE_RS05080 84bef351ccbe08762defac18583c41fa 452 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 373 396 1.8E-42 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RPE_RS05080 84bef351ccbe08762defac18583c41fa 452 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 85 105 1.8E-42 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RPE_RS05080 84bef351ccbe08762defac18583c41fa 452 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 43 66 1.8E-42 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RPE_RS05080 84bef351ccbe08762defac18583c41fa 452 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 349 373 1.8E-42 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RPE_RS05080 84bef351ccbe08762defac18583c41fa 452 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 316 337 1.8E-42 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RPE_RS21870 a67ae60e10e26471abd7a17c624a9939 1011 PANTHER PTHR10742 600 704 2.7E-77 T 23-04-2016 RPE_RS21870 a67ae60e10e26471abd7a17c624a9939 1011 PANTHER PTHR10742 3 104 2.7E-77 T 23-04-2016 RPE_RS21870 a67ae60e10e26471abd7a17c624a9939 1011 PANTHER PTHR10742 260 368 2.7E-77 T 23-04-2016 RPE_RS21870 a67ae60e10e26471abd7a17c624a9939 1011 PANTHER PTHR10742 129 197 2.7E-77 T 23-04-2016 RPE_RS21870 a67ae60e10e26471abd7a17c624a9939 1011 PANTHER PTHR10742 427 584 2.7E-77 T 23-04-2016 RPE_RS21870 a67ae60e10e26471abd7a17c624a9939 1011 SUPERFAMILY SSF51905 2 82 2.72E-13 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS21870 a67ae60e10e26471abd7a17c624a9939 1011 SUPERFAMILY SSF51905 632 684 2.72E-13 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS21870 a67ae60e10e26471abd7a17c624a9939 1011 SUPERFAMILY SSF51905 314 402 2.72E-13 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS21870 a67ae60e10e26471abd7a17c624a9939 1011 PANTHER PTHR10742:SF302 600 704 2.7E-77 T 23-04-2016 RPE_RS21870 a67ae60e10e26471abd7a17c624a9939 1011 PANTHER PTHR10742:SF302 3 104 2.7E-77 T 23-04-2016 RPE_RS21870 a67ae60e10e26471abd7a17c624a9939 1011 PANTHER PTHR10742:SF302 260 368 2.7E-77 T 23-04-2016 RPE_RS21870 a67ae60e10e26471abd7a17c624a9939 1011 PANTHER PTHR10742:SF302 129 197 2.7E-77 T 23-04-2016 RPE_RS21870 a67ae60e10e26471abd7a17c624a9939 1011 PANTHER PTHR10742:SF302 427 584 2.7E-77 T 23-04-2016 RPE_RS21870 a67ae60e10e26471abd7a17c624a9939 1011 SUPERFAMILY SSF160104 729 756 1.7E-6 T 23-04-2016 RPE_RS21870 a67ae60e10e26471abd7a17c624a9939 1011 SUPERFAMILY SSF160104 799 882 1.7E-6 T 23-04-2016 RPE_RS21870 a67ae60e10e26471abd7a17c624a9939 1011 Gene3D G3DSA:3.50.50.60 4 48 2.4E-8 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS21870 a67ae60e10e26471abd7a17c624a9939 1011 Gene3D G3DSA:3.50.50.60 342 371 2.4E-8 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS21870 a67ae60e10e26471abd7a17c624a9939 1011 Pfam PF13450 NAD(P)-binding Rossmann-like domain 9 81 5.5E-8 T 23-04-2016 RPE_RS21870 a67ae60e10e26471abd7a17c624a9939 1011 Gene3D G3DSA:2.40.400.10 731 763 5.1E-5 T 23-04-2016 IPR023375 Acetoacetate decarboxylase beta barrel domain KEGG: 00072+4.1.1.4|KEGG: 00640+4.1.1.4|MetaCyc: PWY-5451|MetaCyc: PWY-6588|MetaCyc: PWY-6876|MetaCyc: PWY-7466 RPE_RS21870 a67ae60e10e26471abd7a17c624a9939 1011 Gene3D G3DSA:2.40.400.10 806 862 5.1E-5 T 23-04-2016 IPR023375 Acetoacetate decarboxylase beta barrel domain KEGG: 00072+4.1.1.4|KEGG: 00640+4.1.1.4|MetaCyc: PWY-5451|MetaCyc: PWY-6588|MetaCyc: PWY-6876|MetaCyc: PWY-7466 RPE_RS21870 a67ae60e10e26471abd7a17c624a9939 1011 Gene3D G3DSA:3.50.50.60 643 679 1.8E-6 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS21870 a67ae60e10e26471abd7a17c624a9939 1011 Gene3D G3DSA:3.50.50.60 446 483 1.8E-6 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS15495 22e5f506217b1456c94feda584774781 146 SUPERFAMILY SSF47175 23 144 1.91E-35 T 23-04-2016 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 RPE_RS15495 22e5f506217b1456c94feda584774781 146 Gene3D G3DSA:1.20.120.10 23 145 6.9E-39 T 23-04-2016 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 RPE_RS15495 22e5f506217b1456c94feda584774781 146 Pfam PF01322 Cytochrome C' 24 142 3.1E-32 T 23-04-2016 IPR002321 Cytochrome c, class II GO:0005506|GO:0009055|GO:0020037 RPE_RS15495 22e5f506217b1456c94feda584774781 146 PIRSF PIRSF000027 5 144 1.1E-35 T 23-04-2016 IPR012127 Cytochrome c prime GO:0005506|GO:0009055|GO:0020037|GO:0042597 RPE_RS00790 a1a7f00b2c0c98460ba0c00dc37ea497 253 Gene3D G3DSA:3.40.50.150 30 238 4.3E-42 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS00790 a1a7f00b2c0c98460ba0c00dc37ea497 253 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 17 252 38.906 T 23-04-2016 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|UniPathway: UPA00232 RPE_RS00790 a1a7f00b2c0c98460ba0c00dc37ea497 253 Pfam PF13489 Methyltransferase domain 53 222 2.1E-20 T 23-04-2016 RPE_RS00790 a1a7f00b2c0c98460ba0c00dc37ea497 253 PANTHER PTHR10108:SF902 13 249 7.7E-82 T 23-04-2016 RPE_RS00790 a1a7f00b2c0c98460ba0c00dc37ea497 253 SUPERFAMILY SSF53335 14 235 3.59E-40 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS00790 a1a7f00b2c0c98460ba0c00dc37ea497 253 PANTHER PTHR10108 13 249 7.7E-82 T 23-04-2016 RPE_RS00790 a1a7f00b2c0c98460ba0c00dc37ea497 253 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 19 246 1.2E-89 T 23-04-2016 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|UniPathway: UPA00232 RPE_RS08635 b9d5733e2bfa8aae9700251bc95ba5aa 319 PANTHER PTHR11432:SF8 1 319 1.7E-123 T 23-04-2016 RPE_RS08635 b9d5733e2bfa8aae9700251bc95ba5aa 319 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 204 217 - T 23-04-2016 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 RPE_RS08635 b9d5733e2bfa8aae9700251bc95ba5aa 319 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 4 316 22.789 T 23-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 RPE_RS08635 b9d5733e2bfa8aae9700251bc95ba5aa 319 Pfam PF00146 NADH dehydrogenase 14 309 6.1E-107 T 23-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 RPE_RS08635 b9d5733e2bfa8aae9700251bc95ba5aa 319 PANTHER PTHR11432 1 319 1.7E-123 T 23-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 RPE_RS18305 98bb07e20e5fcc1da4c842107dc4fd6f 141 Gene3D G3DSA:3.40.30.10 1 138 4.0E-54 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS18305 98bb07e20e5fcc1da4c842107dc4fd6f 141 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 3 115 5.0E-41 T 23-04-2016 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 RPE_RS18305 98bb07e20e5fcc1da4c842107dc4fd6f 141 SUPERFAMILY SSF52833 2 135 8.47E-37 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS18305 98bb07e20e5fcc1da4c842107dc4fd6f 141 PANTHER PTHR30041 1 134 1.8E-42 T 23-04-2016 RPE_RS18305 98bb07e20e5fcc1da4c842107dc4fd6f 141 Pfam PF03960 ArsC family 7 113 3.5E-17 T 23-04-2016 IPR006660 Arsenate reductase-like RPE_RS18305 98bb07e20e5fcc1da4c842107dc4fd6f 141 PANTHER PTHR30041:SF0 1 134 1.8E-42 T 23-04-2016 RPE_RS12640 d948d8fa731617ae73c36b18cf66ddaa 676 PANTHER PTHR23083 28 264 5.3E-56 T 23-04-2016 RPE_RS12640 d948d8fa731617ae73c36b18cf66ddaa 676 Gene3D G3DSA:1.25.40.10 15 267 1.6E-70 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS12640 d948d8fa731617ae73c36b18cf66ddaa 676 SMART SM00028 22 55 37.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS12640 d948d8fa731617ae73c36b18cf66ddaa 676 SMART SM00028 124 157 4.3E-7 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS12640 d948d8fa731617ae73c36b18cf66ddaa 676 SMART SM00028 56 89 130.0 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS12640 d948d8fa731617ae73c36b18cf66ddaa 676 SMART SM00028 158 191 2.6E-8 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS12640 d948d8fa731617ae73c36b18cf66ddaa 676 SMART SM00028 226 259 0.002 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS12640 d948d8fa731617ae73c36b18cf66ddaa 676 SMART SM00028 90 123 5.1E-8 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS12640 d948d8fa731617ae73c36b18cf66ddaa 676 SMART SM00028 192 225 1.8E-7 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS12640 d948d8fa731617ae73c36b18cf66ddaa 676 Pfam PF13844 Glycosyl transferase family 41 482 667 1.7E-21 T 23-04-2016 IPR029489 O-GlcNAc transferase, C-terminal UniPathway: UPA00378 RPE_RS12640 d948d8fa731617ae73c36b18cf66ddaa 676 Pfam PF13844 Glycosyl transferase family 41 316 454 9.5E-23 T 23-04-2016 IPR029489 O-GlcNAc transferase, C-terminal UniPathway: UPA00378 RPE_RS12640 d948d8fa731617ae73c36b18cf66ddaa 676 SUPERFAMILY SSF48452 21 97 2.59E-6 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS12640 d948d8fa731617ae73c36b18cf66ddaa 676 SUPERFAMILY SSF48439 76 272 3.92E-46 T 23-04-2016 RPE_RS12640 d948d8fa731617ae73c36b18cf66ddaa 676 SUPERFAMILY SSF53756 374 589 4.34E-6 T 23-04-2016 RPE_RS12640 d948d8fa731617ae73c36b18cf66ddaa 676 Pfam PF13181 Tetratricopeptide repeat 232 259 0.033 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS12640 d948d8fa731617ae73c36b18cf66ddaa 676 Pfam PF00515 Tetratricopeptide repeat 90 122 9.1E-10 T 23-04-2016 IPR001440 Tetratricopeptide repeat 1 GO:0005515 RPE_RS12640 d948d8fa731617ae73c36b18cf66ddaa 676 Pfam PF00515 Tetratricopeptide repeat 125 157 1.1E-8 T 23-04-2016 IPR001440 Tetratricopeptide repeat 1 GO:0005515 RPE_RS12640 d948d8fa731617ae73c36b18cf66ddaa 676 Pfam PF13414 TPR repeat 165 204 1.7E-11 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS13670 6fb6b2343aad158627c523bbfe448feb 579 PANTHER PTHR33908 22 435 2.0E-75 T 23-04-2016 RPE_RS13670 6fb6b2343aad158627c523bbfe448feb 579 PANTHER PTHR33908:SF3 22 435 2.0E-75 T 23-04-2016 RPE_RS08180 dfd224e5028947f45df511fe2c010135 126 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 12 117 6.1E-10 T 23-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RPE_RS08180 dfd224e5028947f45df511fe2c010135 126 Gene3D G3DSA:3.10.180.10 11 122 3.2E-28 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RPE_RS08180 dfd224e5028947f45df511fe2c010135 126 SUPERFAMILY SSF54593 12 121 3.36E-25 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RPE_RS15505 9391a08ec6ab322aa2bbbbc9722176e8 136 SUPERFAMILY SSF160448 8 113 5.23E-40 T 23-04-2016 IPR018594 Domain of unknown function DUF2023 RPE_RS15505 9391a08ec6ab322aa2bbbbc9722176e8 136 Pfam PF09633 Protein of unknown function (DUF2023) 13 113 6.3E-35 T 23-04-2016 IPR018594 Domain of unknown function DUF2023 RPE_RS15505 9391a08ec6ab322aa2bbbbc9722176e8 136 Gene3D G3DSA:3.30.2190.10 4 114 7.5E-39 T 23-04-2016 IPR018594 Domain of unknown function DUF2023 RPE_RS08890 d03ebf1482a92046b54cb6915b0726f8 329 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 146 154 - T 23-04-2016 IPR000957 Sulphate/thiosulphate-binding, conserved site GO:0008271|GO:0008272|GO:0030288 RPE_RS08890 d03ebf1482a92046b54cb6915b0726f8 329 Gene3D G3DSA:3.40.190.10 170 294 5.1E-26 T 23-04-2016 RPE_RS08890 d03ebf1482a92046b54cb6915b0726f8 329 Gene3D G3DSA:3.40.190.10 22 169 9.0E-51 T 23-04-2016 RPE_RS08890 d03ebf1482a92046b54cb6915b0726f8 329 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 15 326 1.2E-147 T 23-04-2016 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 RPE_RS08890 d03ebf1482a92046b54cb6915b0726f8 329 Pfam PF13531 Bacterial extracellular solute-binding protein 42 280 8.3E-44 T 23-04-2016 RPE_RS08890 d03ebf1482a92046b54cb6915b0726f8 329 SUPERFAMILY SSF53850 21 327 1.99E-86 T 23-04-2016 RPE_RS08890 d03ebf1482a92046b54cb6915b0726f8 329 PANTHER PTHR30368:SF2 1 329 3.4E-182 T 23-04-2016 RPE_RS08890 d03ebf1482a92046b54cb6915b0726f8 329 PANTHER PTHR30368 1 329 3.4E-182 T 23-04-2016 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 RPE_RS24620 3b909d43e65588e2da8faa303d906a2a 628 SUPERFAMILY SSF103088 499 605 2.88E-22 T 23-04-2016 IPR006665 OmpA-like domain RPE_RS24620 3b909d43e65588e2da8faa303d906a2a 628 Gene3D G3DSA:3.30.1330.60 498 605 2.2E-25 T 23-04-2016 IPR006665 OmpA-like domain RPE_RS24620 3b909d43e65588e2da8faa303d906a2a 628 Pfam PF00691 OmpA family 502 596 7.6E-15 T 23-04-2016 IPR006665 OmpA-like domain RPE_RS24620 3b909d43e65588e2da8faa303d906a2a 628 PANTHER PTHR30128 489 604 5.8E-26 T 23-04-2016 RPE_RS05550 26710098dd07d75e75d1b3e7b173330b 323 PANTHER PTHR10366:SF424 6 304 4.6E-162 T 23-04-2016 RPE_RS05550 26710098dd07d75e75d1b3e7b173330b 323 Gene3D G3DSA:3.90.25.10 173 314 2.3E-54 T 23-04-2016 RPE_RS05550 26710098dd07d75e75d1b3e7b173330b 323 Pfam PF16363 GDP-mannose 4,6 dehydratase 8 304 2.1E-51 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS05550 26710098dd07d75e75d1b3e7b173330b 323 PANTHER PTHR10366 6 304 4.6E-162 T 23-04-2016 RPE_RS05550 26710098dd07d75e75d1b3e7b173330b 323 SUPERFAMILY SSF51735 5 309 4.71E-86 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS05550 26710098dd07d75e75d1b3e7b173330b 323 Gene3D G3DSA:3.40.50.720 4 172 2.2E-59 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS14960 00f19c0708ca921c3bad7aa617e7ec5f 428 SUPERFAMILY SSF53187 196 294 1.44E-47 T 23-04-2016 RPE_RS14960 00f19c0708ca921c3bad7aa617e7ec5f 428 SUPERFAMILY SSF53187 341 418 1.44E-47 T 23-04-2016 RPE_RS14960 00f19c0708ca921c3bad7aa617e7ec5f 428 Gene3D G3DSA:3.40.630.40 197 295 1.8E-51 T 23-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 RPE_RS14960 00f19c0708ca921c3bad7aa617e7ec5f 428 Gene3D G3DSA:3.40.630.40 342 418 1.8E-51 T 23-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 RPE_RS14960 00f19c0708ca921c3bad7aa617e7ec5f 428 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 198 414 4.6E-46 T 23-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 RPE_RS14960 00f19c0708ca921c3bad7aa617e7ec5f 428 Pfam PF11741 AMIN domain 54 151 1.8E-12 T 23-04-2016 IPR021731 AMIN domain RPE_RS14960 00f19c0708ca921c3bad7aa617e7ec5f 428 SMART SM00646 258 414 1.5E-33 T 23-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 RPE_RS14960 00f19c0708ca921c3bad7aa617e7ec5f 428 PANTHER PTHR30404 44 423 6.8E-90 T 23-04-2016 RPE_RS14960 00f19c0708ca921c3bad7aa617e7ec5f 428 PANTHER PTHR30404:SF0 44 423 6.8E-90 T 23-04-2016 RPE_RS20225 08636b43098364134e4f31708a497ad9 393 Gene3D G3DSA:3.40.1350.10 60 174 1.2E-8 T 23-04-2016 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 RPE_RS20225 08636b43098364134e4f31708a497ad9 393 Pfam PF04471 Restriction endonuclease 66 169 1.3E-6 T 23-04-2016 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 RPE_RS15985 b470ffde1b0983b719dedbb8d7cd3970 291 PANTHER PTHR13696:SF72 9 261 4.4E-104 T 23-04-2016 RPE_RS15985 b470ffde1b0983b719dedbb8d7cd3970 291 Pfam PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 8 269 8.5E-94 T 23-04-2016 RPE_RS15985 b470ffde1b0983b719dedbb8d7cd3970 291 ProSitePatterns PS00692 NifH/frxC family signature 2. 127 140 - T 23-04-2016 IPR030655 NifH/chlL conserved site RPE_RS15985 b470ffde1b0983b719dedbb8d7cd3970 291 SUPERFAMILY SSF52540 7 273 7.21E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15985 b470ffde1b0983b719dedbb8d7cd3970 291 ProSitePatterns PS00746 NifH/frxC family signature 1. 88 100 - T 23-04-2016 IPR030655 NifH/chlL conserved site RPE_RS15985 b470ffde1b0983b719dedbb8d7cd3970 291 PIRSF PIRSF000363 5 277 6.7E-102 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RPE_RS15985 b470ffde1b0983b719dedbb8d7cd3970 291 Gene3D G3DSA:3.40.50.300 8 269 1.8E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15985 b470ffde1b0983b719dedbb8d7cd3970 291 PRINTS PR00091 Nitrogenase component II signature 34 49 1.5E-33 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RPE_RS15985 b470ffde1b0983b719dedbb8d7cd3970 291 PRINTS PR00091 Nitrogenase component II signature 12 25 1.5E-33 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RPE_RS15985 b470ffde1b0983b719dedbb8d7cd3970 291 PRINTS PR00091 Nitrogenase component II signature 86 100 1.5E-33 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RPE_RS15985 b470ffde1b0983b719dedbb8d7cd3970 291 PRINTS PR00091 Nitrogenase component II signature 126 141 1.5E-33 T 23-04-2016 IPR000392 Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO:0005524|GO:0016491|GO:0055114 RPE_RS15985 b470ffde1b0983b719dedbb8d7cd3970 291 PANTHER PTHR13696 9 261 4.4E-104 T 23-04-2016 RPE_RS06755 f15a98c132e0e68650087931876a42ab 141 PANTHER PTHR11961 5 97 1.6E-17 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RPE_RS06755 f15a98c132e0e68650087931876a42ab 141 PRINTS PR00604 Class IA and IB cytochrome C signature 49 64 3.7E-14 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RPE_RS06755 f15a98c132e0e68650087931876a42ab 141 PRINTS PR00604 Class IA and IB cytochrome C signature 65 75 3.7E-14 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RPE_RS06755 f15a98c132e0e68650087931876a42ab 141 PRINTS PR00604 Class IA and IB cytochrome C signature 82 98 3.7E-14 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RPE_RS06755 f15a98c132e0e68650087931876a42ab 141 PRINTS PR00604 Class IA and IB cytochrome C signature 131 139 3.7E-14 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RPE_RS06755 f15a98c132e0e68650087931876a42ab 141 PRINTS PR00604 Class IA and IB cytochrome C signature 36 43 3.7E-14 T 23-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RPE_RS06755 f15a98c132e0e68650087931876a42ab 141 Pfam PF00034 Cytochrome c 27 141 4.1E-8 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS06755 f15a98c132e0e68650087931876a42ab 141 SUPERFAMILY SSF46626 24 141 1.28E-30 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS06755 f15a98c132e0e68650087931876a42ab 141 Gene3D G3DSA:1.10.760.10 24 140 5.2E-35 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS22120 20b149e365953250159a439f663cfe88 182 SMART SM00852 16 160 1.6E-35 T 23-04-2016 IPR001453 MoaB/Mog domain RPE_RS22120 20b149e365953250159a439f663cfe88 182 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 14 152 6.8E-38 T 23-04-2016 IPR001453 MoaB/Mog domain RPE_RS22120 20b149e365953250159a439f663cfe88 182 PANTHER PTHR10192:SF18 6 168 6.9E-81 T 23-04-2016 RPE_RS22120 20b149e365953250159a439f663cfe88 182 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 74 87 - T 23-04-2016 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 UniPathway: UPA00344 RPE_RS22120 20b149e365953250159a439f663cfe88 182 Gene3D G3DSA:3.40.980.10 8 170 3.6E-52 T 23-04-2016 IPR001453 MoaB/Mog domain RPE_RS22120 20b149e365953250159a439f663cfe88 182 Pfam PF00994 Probable molybdopterin binding domain 16 157 9.7E-39 T 23-04-2016 IPR001453 MoaB/Mog domain RPE_RS22120 20b149e365953250159a439f663cfe88 182 SUPERFAMILY SSF53218 9 171 6.81E-49 T 23-04-2016 IPR001453 MoaB/Mog domain RPE_RS22120 20b149e365953250159a439f663cfe88 182 PIRSF PIRSF006443 1 168 1.4E-64 T 23-04-2016 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 UniPathway: UPA00344 RPE_RS22120 20b149e365953250159a439f663cfe88 182 TIGRFAM TIGR02667 moaB_proteo: molybdenum cofactor biosynthesis protein B 9 171 2.6E-82 T 23-04-2016 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria GO:0006777 UniPathway: UPA00344 RPE_RS22120 20b149e365953250159a439f663cfe88 182 PANTHER PTHR10192 6 168 6.9E-81 T 23-04-2016 RPE_RS01045 0ef667b85d543ae3743dbbaa3e09af34 224 PANTHER PTHR18901:SF9 5 222 2.9E-57 T 23-04-2016 RPE_RS01045 0ef667b85d543ae3743dbbaa3e09af34 224 Gene3D G3DSA:3.40.50.1000 86 220 1.5E-41 T 23-04-2016 IPR023214 HAD-like domain RPE_RS01045 0ef667b85d543ae3743dbbaa3e09af34 224 Gene3D G3DSA:3.40.50.1000 5 18 1.5E-41 T 23-04-2016 IPR023214 HAD-like domain RPE_RS01045 0ef667b85d543ae3743dbbaa3e09af34 224 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 182 2.3E-20 T 23-04-2016 IPR023214 HAD-like domain RPE_RS01045 0ef667b85d543ae3743dbbaa3e09af34 224 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 71 182 1.9E-16 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RPE_RS01045 0ef667b85d543ae3743dbbaa3e09af34 224 PANTHER PTHR18901 5 222 2.9E-57 T 23-04-2016 RPE_RS01045 0ef667b85d543ae3743dbbaa3e09af34 224 Gene3D G3DSA:1.10.150.240 19 83 1.1E-25 T 23-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 RPE_RS01045 0ef667b85d543ae3743dbbaa3e09af34 224 SUPERFAMILY SSF56784 3 218 4.51E-53 T 23-04-2016 IPR023214 HAD-like domain RPE_RS00280 76f6764f72f87a419d55c1ce84b95096 468 PANTHER PTHR24305 65 462 2.9E-106 T 23-04-2016 RPE_RS00280 76f6764f72f87a419d55c1ce84b95096 468 PRINTS PR00463 E-class P450 group I signature 267 284 8.9E-19 T 23-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RPE_RS00280 76f6764f72f87a419d55c1ce84b95096 468 PRINTS PR00463 E-class P450 group I signature 325 343 8.9E-19 T 23-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RPE_RS00280 76f6764f72f87a419d55c1ce84b95096 468 PRINTS PR00463 E-class P450 group I signature 287 313 8.9E-19 T 23-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RPE_RS00280 76f6764f72f87a419d55c1ce84b95096 468 PRINTS PR00463 E-class P450 group I signature 72 93 8.9E-19 T 23-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RPE_RS00280 76f6764f72f87a419d55c1ce84b95096 468 PRINTS PR00463 E-class P450 group I signature 365 389 8.9E-19 T 23-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RPE_RS00280 76f6764f72f87a419d55c1ce84b95096 468 PRINTS PR00463 E-class P450 group I signature 409 432 8.9E-19 T 23-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RPE_RS00280 76f6764f72f87a419d55c1ce84b95096 468 PRINTS PR00463 E-class P450 group I signature 399 409 8.9E-19 T 23-04-2016 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RPE_RS00280 76f6764f72f87a419d55c1ce84b95096 468 PANTHER PTHR24305:SF21 65 462 2.9E-106 T 23-04-2016 RPE_RS00280 76f6764f72f87a419d55c1ce84b95096 468 SUPERFAMILY SSF48264 50 461 2.1E-95 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RPE_RS00280 76f6764f72f87a419d55c1ce84b95096 468 PRINTS PR00385 P450 superfamily signature 400 409 4.8E-16 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RPE_RS00280 76f6764f72f87a419d55c1ce84b95096 468 PRINTS PR00385 P450 superfamily signature 409 420 4.8E-16 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RPE_RS00280 76f6764f72f87a419d55c1ce84b95096 468 PRINTS PR00385 P450 superfamily signature 278 295 4.8E-16 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RPE_RS00280 76f6764f72f87a419d55c1ce84b95096 468 PRINTS PR00385 P450 superfamily signature 326 337 4.8E-16 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RPE_RS00280 76f6764f72f87a419d55c1ce84b95096 468 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 402 411 - T 23-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 RPE_RS00280 76f6764f72f87a419d55c1ce84b95096 468 Gene3D G3DSA:1.10.630.10 43 464 2.1E-99 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RPE_RS00280 76f6764f72f87a419d55c1ce84b95096 468 Pfam PF00067 Cytochrome P450 52 438 2.9E-72 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RPE_RS06020 bf9a2aa6fbd9a85b012ee2a7f21151a2 355 SUPERFAMILY SSF53756 11 341 5.65E-57 T 23-04-2016 RPE_RS06020 bf9a2aa6fbd9a85b012ee2a7f21151a2 355 Pfam PF00534 Glycosyl transferases group 1 171 299 3.3E-22 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 RPE_RS06020 bf9a2aa6fbd9a85b012ee2a7f21151a2 355 PANTHER PTHR12526 1 349 4.3E-39 T 23-04-2016 RPE_RS06020 bf9a2aa6fbd9a85b012ee2a7f21151a2 355 Gene3D G3DSA:3.40.50.2000 161 305 2.5E-16 T 23-04-2016 RPE_RS06020 bf9a2aa6fbd9a85b012ee2a7f21151a2 355 Pfam PF13439 Glycosyltransferase Family 4 18 121 2.6E-13 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RPE_RS16115 73547413013f7f99f4b103d2ecad8e6a 565 Pfam PF02538 Hydantoinase B/oxoprolinase 4 527 2.8E-134 T 23-04-2016 IPR003692 Hydantoinase B/oxoprolinase GO:0003824 RPE_RS16115 73547413013f7f99f4b103d2ecad8e6a 565 PANTHER PTHR11365 1 532 5.1E-54 T 23-04-2016 RPE_RS21765 3a7645d2322bc96c5aeb78b95467a3f7 118 Gene3D G3DSA:3.40.960.10 71 102 8.8E-4 T 23-04-2016 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 RPE_RS21765 3a7645d2322bc96c5aeb78b95467a3f7 118 PANTHER PTHR38590:SF1 8 113 5.1E-38 T 23-04-2016 RPE_RS21765 3a7645d2322bc96c5aeb78b95467a3f7 118 Pfam PF04480 Protein of unknown function (DUF559) 7 111 1.9E-39 T 23-04-2016 IPR007569 Domain of unknown function DUF559 RPE_RS21765 3a7645d2322bc96c5aeb78b95467a3f7 118 PANTHER PTHR38590 8 113 5.1E-38 T 23-04-2016 RPE_RS21765 3a7645d2322bc96c5aeb78b95467a3f7 118 SUPERFAMILY SSF52980 6 113 6.43E-20 T 23-04-2016 IPR011335 Restriction endonuclease type II-like RPE_RS19270 98f3c6480483f7bc17bd044559007750 450 Gene3D G3DSA:3.40.50.2300 189 346 7.1E-19 T 23-04-2016 RPE_RS19270 98f3c6480483f7bc17bd044559007750 450 Pfam PF13458 Periplasmic binding protein 47 410 2.3E-67 T 23-04-2016 IPR028081 Leucine-binding protein domain RPE_RS19270 98f3c6480483f7bc17bd044559007750 450 PANTHER PTHR30483 44 82 1.6E-49 T 23-04-2016 RPE_RS19270 98f3c6480483f7bc17bd044559007750 450 PANTHER PTHR30483 99 444 1.6E-49 T 23-04-2016 RPE_RS19270 98f3c6480483f7bc17bd044559007750 450 SUPERFAMILY SSF53822 47 417 8.83E-79 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RPE_RS19270 98f3c6480483f7bc17bd044559007750 450 Gene3D G3DSA:3.40.50.2300 347 399 6.4E-39 T 23-04-2016 RPE_RS19270 98f3c6480483f7bc17bd044559007750 450 Gene3D G3DSA:3.40.50.2300 44 188 6.4E-39 T 23-04-2016 RPE_RS02820 48e0a54663db52ac533d549f2914525d 894 Gene3D G3DSA:3.40.50.300 14 28 4.5E-8 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02820 48e0a54663db52ac533d549f2914525d 894 Gene3D G3DSA:3.40.50.300 62 231 4.5E-8 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02820 48e0a54663db52ac533d549f2914525d 894 SUPERFAMILY SSF52540 14 229 5.14E-13 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02820 48e0a54663db52ac533d549f2914525d 894 Pfam PF04851 Type III restriction enzyme, res subunit 13 229 4.4E-23 T 23-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 RPE_RS02820 48e0a54663db52ac533d549f2914525d 894 SUPERFAMILY SSF52540 327 416 3.25E-9 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02820 48e0a54663db52ac533d549f2914525d 894 SUPERFAMILY SSF52540 67 102 3.25E-9 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS17590 38269ca815fc296ee673c2bee0ba2307 437 Pfam PF13533 Biotin-lipoyl like 58 92 1.9E-7 T 23-04-2016 RPE_RS17590 38269ca815fc296ee673c2bee0ba2307 437 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 24 47 1.3E-55 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RPE_RS17590 38269ca815fc296ee673c2bee0ba2307 437 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 416 436 1.3E-55 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RPE_RS17590 38269ca815fc296ee673c2bee0ba2307 437 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 401 416 1.3E-55 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RPE_RS17590 38269ca815fc296ee673c2bee0ba2307 437 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 358 381 1.3E-55 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RPE_RS17590 38269ca815fc296ee673c2bee0ba2307 437 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 334 358 1.3E-55 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RPE_RS17590 38269ca815fc296ee673c2bee0ba2307 437 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 66 86 1.3E-55 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RPE_RS17590 38269ca815fc296ee673c2bee0ba2307 437 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 301 322 1.3E-55 T 23-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RPE_RS17590 38269ca815fc296ee673c2bee0ba2307 437 Gene3D G3DSA:2.40.50.100 57 88 2.2E-15 T 23-04-2016 RPE_RS17590 38269ca815fc296ee673c2bee0ba2307 437 Gene3D G3DSA:2.40.50.100 286 321 2.2E-15 T 23-04-2016 RPE_RS17590 38269ca815fc296ee673c2bee0ba2307 437 PANTHER PTHR30386 7 109 1.6E-130 T 23-04-2016 RPE_RS17590 38269ca815fc296ee673c2bee0ba2307 437 PANTHER PTHR30386 148 437 1.6E-130 T 23-04-2016 RPE_RS17590 38269ca815fc296ee673c2bee0ba2307 437 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 16 437 3.0E-121 T 23-04-2016 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 RPE_RS17590 38269ca815fc296ee673c2bee0ba2307 437 PANTHER PTHR30386:SF3 7 109 1.6E-130 T 23-04-2016 RPE_RS17590 38269ca815fc296ee673c2bee0ba2307 437 PANTHER PTHR30386:SF3 148 437 1.6E-130 T 23-04-2016 RPE_RS17590 38269ca815fc296ee673c2bee0ba2307 437 Pfam PF13437 HlyD family secretion protein 289 394 6.1E-18 T 23-04-2016 RPE_RS16205 4b94b02dea9a41dea921978a562d36f6 129 Gene3D G3DSA:3.40.50.1010 4 126 1.0E-5 T 23-04-2016 IPR029060 PIN domain-like RPE_RS16205 4b94b02dea9a41dea921978a562d36f6 129 SUPERFAMILY SSF88723 4 123 9.53E-15 T 23-04-2016 IPR029060 PIN domain-like RPE_RS16205 4b94b02dea9a41dea921978a562d36f6 129 Pfam PF01850 PIN domain 4 117 6.2E-7 T 23-04-2016 IPR002716 PIN domain RPE_RS21265 4d67070266f2930ab440243a473e5f37 177 SUPERFAMILY SSF51182 1 176 8.3E-60 T 23-04-2016 IPR011051 RmlC-like cupin domain RPE_RS21265 4d67070266f2930ab440243a473e5f37 177 PANTHER PTHR21047 1 176 1.0E-52 T 23-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 RPE_RS21265 4d67070266f2930ab440243a473e5f37 177 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 176 9.0E-101 T 23-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 RPE_RS21265 4d67070266f2930ab440243a473e5f37 177 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 4 171 1.5E-47 T 23-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 RPE_RS21265 4d67070266f2930ab440243a473e5f37 177 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 6 175 4.4E-56 T 23-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 RPE_RS21265 4d67070266f2930ab440243a473e5f37 177 Gene3D G3DSA:2.60.120.10 1 175 1.5E-61 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS07725 2eed63c1853a4433a5549914f45daaab 352 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 190 323 5.6E-36 T 23-04-2016 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal RPE_RS07725 2eed63c1853a4433a5549914f45daaab 352 SMART SM00858 201 262 8.5E-8 T 23-04-2016 IPR013974 SAF domain RPE_RS07725 2eed63c1853a4433a5549914f45daaab 352 PANTHER PTHR36307 1 343 1.2E-45 T 23-04-2016 RPE_RS07725 2eed63c1853a4433a5549914f45daaab 352 Pfam PF13144 Chaperone for flagella basal body P-ring formation 119 323 2.6E-48 T 23-04-2016 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal RPE_RS23525 10fddeccc46e58a73a58af0f321225a6 314 Gene3D G3DSA:3.30.1150.10 192 312 4.1E-8 T 23-04-2016 RPE_RS23525 10fddeccc46e58a73a58af0f321225a6 314 SUPERFAMILY SSF74653 156 169 1.57E-9 T 23-04-2016 RPE_RS23525 10fddeccc46e58a73a58af0f321225a6 314 SUPERFAMILY SSF74653 205 309 1.57E-9 T 23-04-2016 RPE_RS01250 dc7b07be8f045682a0fcdea6b68a00a3 402 ProSitePatterns PS00737 Thiolases signature 2. 347 363 - T 23-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 RPE_RS01250 dc7b07be8f045682a0fcdea6b68a00a3 402 ProSitePatterns PS00099 Thiolases active site. 382 395 - T 23-04-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 RPE_RS01250 dc7b07be8f045682a0fcdea6b68a00a3 402 SUPERFAMILY SSF53901 277 399 9.74E-44 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS01250 dc7b07be8f045682a0fcdea6b68a00a3 402 PANTHER PTHR18919 1 402 2.5E-242 T 23-04-2016 RPE_RS01250 dc7b07be8f045682a0fcdea6b68a00a3 402 Gene3D G3DSA:3.40.47.10 200 282 6.2E-68 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS01250 dc7b07be8f045682a0fcdea6b68a00a3 402 Gene3D G3DSA:3.40.47.10 3 125 6.2E-68 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS01250 dc7b07be8f045682a0fcdea6b68a00a3 402 Pfam PF00108 Thiolase, N-terminal domain 4 268 3.7E-75 T 23-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 RPE_RS01250 dc7b07be8f045682a0fcdea6b68a00a3 402 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 399 6.5E-133 T 23-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RPE_RS01250 dc7b07be8f045682a0fcdea6b68a00a3 402 SUPERFAMILY SSF53901 3 276 6.83E-80 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS01250 dc7b07be8f045682a0fcdea6b68a00a3 402 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 23-04-2016 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Reactome: REACT_22258 RPE_RS01250 dc7b07be8f045682a0fcdea6b68a00a3 402 Gene3D G3DSA:3.40.47.10 154 199 9.1E-57 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS01250 dc7b07be8f045682a0fcdea6b68a00a3 402 Gene3D G3DSA:3.40.47.10 283 400 9.1E-57 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS01250 dc7b07be8f045682a0fcdea6b68a00a3 402 TIGRFAM TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase 3 401 3.0E-210 T 23-04-2016 IPR012793 Beta-ketoadipyl CoA thiolase GO:0016747|GO:0019619 KEGG: 00250+2.3.1.17|KEGG: 00360+2.3.1.174|KEGG: 00362+2.3.1.174|MetaCyc: PWY-1361|MetaCyc: PWY-2361|MetaCyc: PWY-6185 RPE_RS01250 dc7b07be8f045682a0fcdea6b68a00a3 402 Pfam PF02803 Thiolase, C-terminal domain 277 400 3.2E-43 T 23-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 RPE_RS01250 dc7b07be8f045682a0fcdea6b68a00a3 402 PANTHER PTHR18919:SF91 1 402 2.5E-242 T 23-04-2016 RPE_RS01250 dc7b07be8f045682a0fcdea6b68a00a3 402 PIRSF PIRSF000429 1 402 4.7E-132 T 23-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RPE_RS16535 a41c1f3d01a3229f8056caada7806bef 337 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 4 332 6.5E-122 T 23-04-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00244 RPE_RS16535 a41c1f3d01a3229f8056caada7806bef 337 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 36 328 1.7E-100 T 23-04-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00244 RPE_RS16535 a41c1f3d01a3229f8056caada7806bef 337 PANTHER PTHR30004:SF6 1 337 2.6E-138 T 23-04-2016 RPE_RS16535 a41c1f3d01a3229f8056caada7806bef 337 Gene3D G3DSA:3.40.718.10 2 334 6.7E-123 T 23-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RPE_RS16535 a41c1f3d01a3229f8056caada7806bef 337 SUPERFAMILY SSF53659 3 333 2.27E-102 T 23-04-2016 RPE_RS16535 a41c1f3d01a3229f8056caada7806bef 337 PANTHER PTHR30004 1 337 2.6E-138 T 23-04-2016 RPE_RS16535 a41c1f3d01a3229f8056caada7806bef 337 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 1 332 35.237 T 23-04-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00244 RPE_RS23565 37a3b0f23f68d09099524068e264ecde 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.6E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS23565 37a3b0f23f68d09099524068e264ecde 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 1.6E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS23565 37a3b0f23f68d09099524068e264ecde 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 1.6E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS23565 37a3b0f23f68d09099524068e264ecde 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 1.6E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS23565 37a3b0f23f68d09099524068e264ecde 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 1.6E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS23565 37a3b0f23f68d09099524068e264ecde 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 1.6E-41 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS23565 37a3b0f23f68d09099524068e264ecde 262 Gene3D G3DSA:3.40.50.720 3 246 2.5E-87 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS23565 37a3b0f23f68d09099524068e264ecde 262 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 190 0.0037 T 23-04-2016 RPE_RS23565 37a3b0f23f68d09099524068e264ecde 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 8.3E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS23565 37a3b0f23f68d09099524068e264ecde 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 8.3E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS23565 37a3b0f23f68d09099524068e264ecde 262 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 8.3E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS23565 37a3b0f23f68d09099524068e264ecde 262 SUPERFAMILY SSF51735 6 245 1.43E-85 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS23565 37a3b0f23f68d09099524068e264ecde 262 PANTHER PTHR24322 11 138 3.7E-59 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS23565 37a3b0f23f68d09099524068e264ecde 262 PANTHER PTHR24322 154 186 3.7E-59 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS23565 37a3b0f23f68d09099524068e264ecde 262 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 245 6.8E-75 T 23-04-2016 RPE_RS14360 d5ab1ae885c50e366d33a7007423ec55 158 ProSitePatterns PS00360 Ribosomal protein S9 signature. 97 115 - T 23-04-2016 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 RPE_RS14360 d5ab1ae885c50e366d33a7007423ec55 158 Gene3D G3DSA:3.30.230.10 32 158 6.9E-51 T 23-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RPE_RS14360 d5ab1ae885c50e366d33a7007423ec55 158 SUPERFAMILY SSF54211 33 158 1.4E-46 T 23-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RPE_RS14360 d5ab1ae885c50e366d33a7007423ec55 158 PANTHER PTHR21569:SF1 26 158 1.1E-63 T 23-04-2016 RPE_RS14360 d5ab1ae885c50e366d33a7007423ec55 158 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 29 158 32.412 T 23-04-2016 IPR023035 Ribosomal protein S9, bacterial/plastid RPE_RS14360 d5ab1ae885c50e366d33a7007423ec55 158 PANTHER PTHR21569 26 158 1.1E-63 T 23-04-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 RPE_RS14360 d5ab1ae885c50e366d33a7007423ec55 158 Pfam PF00380 Ribosomal protein S9/S16 38 158 8.2E-47 T 23-04-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 RPE_RS20415 609239c9e68f0b22fc12b21cc39104b8 368 Gene3D G3DSA:3.50.50.60 325 366 5.3E-25 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS20415 609239c9e68f0b22fc12b21cc39104b8 368 Gene3D G3DSA:3.50.50.60 3 84 5.3E-25 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS20415 609239c9e68f0b22fc12b21cc39104b8 368 Gene3D G3DSA:3.50.50.60 139 219 5.3E-25 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS20415 609239c9e68f0b22fc12b21cc39104b8 368 Gene3D G3DSA:3.30.9.10 86 138 3.3E-4 T 23-04-2016 RPE_RS20415 609239c9e68f0b22fc12b21cc39104b8 368 Pfam PF01266 FAD dependent oxidoreductase 6 362 9.6E-60 T 23-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RPE_RS20415 609239c9e68f0b22fc12b21cc39104b8 368 PANTHER PTHR13847:SF207 1 364 1.2E-202 T 23-04-2016 RPE_RS20415 609239c9e68f0b22fc12b21cc39104b8 368 SUPERFAMILY SSF51905 5 319 3.37E-42 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS20415 609239c9e68f0b22fc12b21cc39104b8 368 PANTHER PTHR13847 1 364 1.2E-202 T 23-04-2016 RPE_RS14515 a81c06cf103964ab449da1c44d71a78a 247 Pfam PF13505 Outer membrane protein beta-barrel domain 13 219 3.4E-15 T 23-04-2016 IPR027385 Outer membrane protein beta-barrel RPE_RS14515 a81c06cf103964ab449da1c44d71a78a 247 PANTHER PTHR34001 1 247 1.4E-83 T 23-04-2016 RPE_RS14515 a81c06cf103964ab449da1c44d71a78a 247 Gene3D G3DSA:2.40.160.20 14 244 9.6E-35 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RPE_RS14515 a81c06cf103964ab449da1c44d71a78a 247 SUPERFAMILY SSF56925 41 243 1.53E-31 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RPE_RS18750 11ff5ec7e14e94acd44d484c0f2eaf52 174 PANTHER PTHR36506:SF1 2 174 1.2E-57 T 23-04-2016 RPE_RS18750 11ff5ec7e14e94acd44d484c0f2eaf52 174 PANTHER PTHR36506 2 174 1.2E-57 T 23-04-2016 RPE_RS18750 11ff5ec7e14e94acd44d484c0f2eaf52 174 Pfam PF01478 Type IV leader peptidase family 10 112 4.8E-11 T 23-04-2016 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 RPE_RS17005 fadb7c1141c2ab304a8af91367d7eb2e 410 Gene3D G3DSA:3.40.630.30 207 353 2.1E-24 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS17005 fadb7c1141c2ab304a8af91367d7eb2e 410 Pfam PF04339 Peptidogalycan biosysnthesis/recognition 14 405 2.3E-164 T 23-04-2016 IPR007434 Peptidogalycan biosysnthesis/recognition RPE_RS17005 fadb7c1141c2ab304a8af91367d7eb2e 410 SUPERFAMILY SSF55729 207 378 7.42E-38 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS17005 fadb7c1141c2ab304a8af91367d7eb2e 410 PANTHER PTHR31384 77 339 8.5E-73 T 23-04-2016 RPE_RS17500 6c0f73323bb1fcd728a3b3ab27d64b70 242 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 39 216 2.5E-48 T 23-04-2016 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00566 RPE_RS17500 6c0f73323bb1fcd728a3b3ab27d64b70 242 PANTHER PTHR34136 1 235 9.8E-75 T 23-04-2016 RPE_RS17500 6c0f73323bb1fcd728a3b3ab27d64b70 242 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 45 214 8.0E-61 T 23-04-2016 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00566 RPE_RS16625 01f4169ebde6e4e237c6b3544cc6cb7f 329 Pfam PF09991 Predicted membrane protein (DUF2232) 164 300 5.9E-7 T 23-04-2016 IPR018710 Protein of unknown function DUF2232 RPE_RS14295 990a5a1e45496f3dc0600eddb0a3e8ce 784 PANTHER PTHR32309:SF13 39 763 5.1E-131 T 23-04-2016 RPE_RS14295 990a5a1e45496f3dc0600eddb0a3e8ce 784 SUPERFAMILY SSF52540 616 738 3.95E-10 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14295 990a5a1e45496f3dc0600eddb0a3e8ce 784 Gene3D G3DSA:3.40.50.300 616 743 6.1E-11 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14295 990a5a1e45496f3dc0600eddb0a3e8ce 784 Pfam PF02706 Chain length determinant protein 64 236 4.6E-14 T 23-04-2016 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 RPE_RS14295 990a5a1e45496f3dc0600eddb0a3e8ce 784 PANTHER PTHR32309 39 763 5.1E-131 T 23-04-2016 RPE_RS04130 39ea0b3700024342a47706043767437e 233 SMART SM00862 154 230 2.4E-21 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS04130 39ea0b3700024342a47706043767437e 233 SUPERFAMILY SSF52172 1 178 1.05E-38 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS04130 39ea0b3700024342a47706043767437e 233 PANTHER PTHR26402 2 232 1.8E-121 T 23-04-2016 RPE_RS04130 39ea0b3700024342a47706043767437e 233 SMART SM00448 2 112 2.4E-38 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS04130 39ea0b3700024342a47706043767437e 233 Gene3D G3DSA:1.10.10.10 133 232 1.7E-28 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS04130 39ea0b3700024342a47706043767437e 233 PANTHER PTHR26402:SF476 2 232 1.8E-121 T 23-04-2016 RPE_RS04130 39ea0b3700024342a47706043767437e 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 230 5.2E-22 T 23-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RPE_RS04130 39ea0b3700024342a47706043767437e 233 Pfam PF00072 Response regulator receiver domain 4 113 1.6E-28 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS04130 39ea0b3700024342a47706043767437e 233 Gene3D G3DSA:3.40.50.2300 1 124 6.1E-38 T 23-04-2016 RPE_RS18195 2cd508f10dc89452773355a88d05351a 214 Pfam PF13646 HEAT repeats 113 183 5.9E-9 T 23-04-2016 RPE_RS18195 2cd508f10dc89452773355a88d05351a 214 Pfam PF13646 HEAT repeats 22 105 7.4E-13 T 23-04-2016 RPE_RS18195 2cd508f10dc89452773355a88d05351a 214 SUPERFAMILY SSF48371 28 182 1.97E-19 T 23-04-2016 IPR016024 Armadillo-type fold GO:0005488 RPE_RS18195 2cd508f10dc89452773355a88d05351a 214 Gene3D G3DSA:1.25.10.10 28 180 5.6E-21 T 23-04-2016 IPR011989 Armadillo-like helical RPE_RS18195 2cd508f10dc89452773355a88d05351a 214 SMART SM00567 E-Z type HEAT repeats 156 185 200.0 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat RPE_RS18195 2cd508f10dc89452773355a88d05351a 214 SMART SM00567 E-Z type HEAT repeats 63 92 0.061 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat RPE_RS18195 2cd508f10dc89452773355a88d05351a 214 SMART SM00567 E-Z type HEAT repeats 94 122 280.0 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat RPE_RS18195 2cd508f10dc89452773355a88d05351a 214 SMART SM00567 E-Z type HEAT repeats 124 153 570.0 T 23-04-2016 IPR004155 PBS lyase HEAT-like repeat RPE_RS06235 2e2d5fb7c9367b791f4e65746e9f34a1 597 ProSitePatterns PS00508 Nickel-dependent hydrogenases large subunit signature 2. 573 582 - T 23-04-2016 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 RPE_RS06235 2e2d5fb7c9367b791f4e65746e9f34a1 597 ProSitePatterns PS00507 Nickel-dependent hydrogenases large subunit signature 1. 54 79 - T 23-04-2016 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 RPE_RS06235 2e2d5fb7c9367b791f4e65746e9f34a1 597 PANTHER PTHR11993:SF22 12 131 1.1E-252 T 23-04-2016 RPE_RS06235 2e2d5fb7c9367b791f4e65746e9f34a1 597 PANTHER PTHR11993:SF22 384 589 1.1E-252 T 23-04-2016 RPE_RS06235 2e2d5fb7c9367b791f4e65746e9f34a1 597 PANTHER PTHR11993:SF22 201 272 1.1E-252 T 23-04-2016 RPE_RS06235 2e2d5fb7c9367b791f4e65746e9f34a1 597 Gene3D G3DSA:1.10.645.10 5 142 2.8E-209 T 23-04-2016 IPR029014 NiFe hydrogenase-like RPE_RS06235 2e2d5fb7c9367b791f4e65746e9f34a1 597 Gene3D G3DSA:1.10.645.10 186 582 2.8E-209 T 23-04-2016 IPR029014 NiFe hydrogenase-like RPE_RS06235 2e2d5fb7c9367b791f4e65746e9f34a1 597 Pfam PF00374 Nickel-dependent hydrogenase 54 582 4.0E-233 T 23-04-2016 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 RPE_RS06235 2e2d5fb7c9367b791f4e65746e9f34a1 597 SUPERFAMILY SSF56762 11 582 2.09E-181 T 23-04-2016 IPR029014 NiFe hydrogenase-like RPE_RS06235 2e2d5fb7c9367b791f4e65746e9f34a1 597 PANTHER PTHR11993 12 131 1.1E-252 T 23-04-2016 RPE_RS06235 2e2d5fb7c9367b791f4e65746e9f34a1 597 PANTHER PTHR11993 384 589 1.1E-252 T 23-04-2016 RPE_RS06235 2e2d5fb7c9367b791f4e65746e9f34a1 597 PANTHER PTHR11993 201 272 1.1E-252 T 23-04-2016 RPE_RS03260 30704d55b7c29de27428846b29306337 182 PANTHER PTHR34980 26 174 5.4E-27 T 23-04-2016 RPE_RS03260 30704d55b7c29de27428846b29306337 182 Pfam PF05656 Protein of unknown function (DUF805) 33 174 4.3E-21 T 23-04-2016 IPR008523 Protein of unknown function DUF805 GO:0016021 RPE_RS03260 30704d55b7c29de27428846b29306337 182 PANTHER PTHR34980:SF1 26 174 5.4E-27 T 23-04-2016 RPE_RS09640 58c804f52558e33c9e42d57ba55bfa7f 70 TIGRFAM TIGR02216 phage_TIGR02216: phage conserved hypothetical protein 3 61 2.0E-23 T 23-04-2016 IPR011739 Gene transfer agent, rcc01693 RPE_RS09640 58c804f52558e33c9e42d57ba55bfa7f 70 Pfam PF09550 Phage tail assembly chaperone protein, TAC 4 62 1.3E-24 T 23-04-2016 IPR019056 Phage tail assembly chaperone protein, TAC6 RPE_RS03730 01b4c45fdb8dec7ec5b42e0f7e4223b6 371 Pfam PF04303 PrpF protein 3 354 3.0E-110 T 23-04-2016 IPR007400 PrpF protein RPE_RS03730 01b4c45fdb8dec7ec5b42e0f7e4223b6 371 Gene3D G3DSA:3.10.310.10 177 335 4.3E-50 T 23-04-2016 RPE_RS03730 01b4c45fdb8dec7ec5b42e0f7e4223b6 371 SUPERFAMILY SSF54506 2 168 5.1E-59 T 23-04-2016 RPE_RS03730 01b4c45fdb8dec7ec5b42e0f7e4223b6 371 SUPERFAMILY SSF54506 174 357 1.02E-57 T 23-04-2016 RPE_RS03730 01b4c45fdb8dec7ec5b42e0f7e4223b6 371 PANTHER PTHR30349 5 123 2.2E-42 T 23-04-2016 RPE_RS03730 01b4c45fdb8dec7ec5b42e0f7e4223b6 371 PANTHER PTHR30349:SF39 5 123 2.2E-42 T 23-04-2016 RPE_RS03730 01b4c45fdb8dec7ec5b42e0f7e4223b6 371 Gene3D G3DSA:3.10.310.10 2 176 1.2E-70 T 23-04-2016 RPE_RS13405 8a4e25b7e12a7959d5f3fdea7b4c725f 331 Gene3D G3DSA:3.40.50.720 14 181 1.7E-56 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS13405 8a4e25b7e12a7959d5f3fdea7b4c725f 331 Gene3D G3DSA:3.90.25.10 182 322 1.1E-56 T 23-04-2016 RPE_RS13405 8a4e25b7e12a7959d5f3fdea7b4c725f 331 PANTHER PTHR10366:SF424 15 326 4.8E-161 T 23-04-2016 RPE_RS13405 8a4e25b7e12a7959d5f3fdea7b4c725f 331 PANTHER PTHR10366 15 326 4.8E-161 T 23-04-2016 RPE_RS13405 8a4e25b7e12a7959d5f3fdea7b4c725f 331 SUPERFAMILY SSF51735 15 320 1.73E-87 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS13405 8a4e25b7e12a7959d5f3fdea7b4c725f 331 Pfam PF16363 GDP-mannose 4,6 dehydratase 17 313 4.6E-52 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS07100 a682ff905a54a0e1da3c7dba4cef43b0 323 Gene3D G3DSA:2.40.30.30 184 311 3.0E-41 T 23-04-2016 IPR023465 Riboflavin kinase domain GO:0008531|GO:0009231 RPE_RS07100 a682ff905a54a0e1da3c7dba4cef43b0 323 SUPERFAMILY SSF52374 21 184 5.63E-29 T 23-04-2016 RPE_RS07100 a682ff905a54a0e1da3c7dba4cef43b0 323 PANTHER PTHR22749:SF0 1 309 5.0E-119 T 23-04-2016 RPE_RS07100 a682ff905a54a0e1da3c7dba4cef43b0 323 Pfam PF01687 Riboflavin kinase 188 308 6.0E-35 T 23-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 RPE_RS07100 a682ff905a54a0e1da3c7dba4cef43b0 323 SUPERFAMILY SSF82114 178 310 5.45E-43 T 23-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 RPE_RS07100 a682ff905a54a0e1da3c7dba4cef43b0 323 PANTHER PTHR22749 1 309 5.0E-119 T 23-04-2016 IPR023468 Riboflavin kinase KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|UniPathway: UPA00276 RPE_RS07100 a682ff905a54a0e1da3c7dba4cef43b0 323 PIRSF PIRSF004491 6 315 9.6E-92 T 23-04-2016 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 RPE_RS07100 a682ff905a54a0e1da3c7dba4cef43b0 323 Gene3D G3DSA:3.40.50.620 8 183 1.1E-51 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS07100 a682ff905a54a0e1da3c7dba4cef43b0 323 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 23 309 1.7E-74 T 23-04-2016 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 RPE_RS07100 a682ff905a54a0e1da3c7dba4cef43b0 323 Pfam PF06574 FAD synthetase 17 170 2.4E-44 T 23-04-2016 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 RPE_RS07100 a682ff905a54a0e1da3c7dba4cef43b0 323 SMART SM00904 187 310 2.3E-55 T 23-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 RPE_RS09730 96b4dcebe6aa1ecee715a6989ae0a557 162 Gene3D G3DSA:1.20.1260.10 1 148 2.4E-40 T 23-04-2016 IPR012347 Ferritin-related RPE_RS09730 96b4dcebe6aa1ecee715a6989ae0a557 162 Pfam PF02915 Rubrerythrin 7 144 3.2E-10 T 23-04-2016 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 RPE_RS09730 96b4dcebe6aa1ecee715a6989ae0a557 162 SUPERFAMILY SSF47240 3 152 5.54E-29 T 23-04-2016 IPR009078 Ferritin-like superfamily RPE_RS21250 264ca81cdc6f4016c214c5a8524055d1 254 TIGRFAM TIGR02623 G1P_cyt_trans: glucose-1-phosphate cytidylyltransferase 1 254 3.0E-131 T 23-04-2016 IPR013446 Glucose-1-phosphate cytidylyltransferase GO:0047343 KEGG: 00500+2.7.7.33|KEGG: 00520+2.7.7.33|MetaCyc: PWY-5833|MetaCyc: PWY-5940|UniPathway: UPA00055|UniPathway: UPA00281 RPE_RS21250 264ca81cdc6f4016c214c5a8524055d1 254 PANTHER PTHR22572:SF16 2 254 3.2E-152 T 23-04-2016 IPR013446 Glucose-1-phosphate cytidylyltransferase GO:0047343 KEGG: 00500+2.7.7.33|KEGG: 00520+2.7.7.33|MetaCyc: PWY-5833|MetaCyc: PWY-5940|UniPathway: UPA00055|UniPathway: UPA00281 RPE_RS21250 264ca81cdc6f4016c214c5a8524055d1 254 Gene3D G3DSA:3.90.550.10 1 248 3.2E-63 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS21250 264ca81cdc6f4016c214c5a8524055d1 254 PANTHER PTHR22572 2 254 3.2E-152 T 23-04-2016 RPE_RS21250 264ca81cdc6f4016c214c5a8524055d1 254 SUPERFAMILY SSF53448 1 249 9.1E-66 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS21250 264ca81cdc6f4016c214c5a8524055d1 254 Pfam PF00483 Nucleotidyl transferase 4 207 4.7E-18 T 23-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 RPE_RS06545 fceb4d67220c1bc70928891e617d3c79 500 Gene3D G3DSA:3.50.50.60 336 467 1.5E-4 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS06545 fceb4d67220c1bc70928891e617d3c79 500 Gene3D G3DSA:3.50.50.60 11 268 6.4E-48 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS06545 fceb4d67220c1bc70928891e617d3c79 500 Pfam PF00743 Flavin-binding monooxygenase-like 106 226 1.5E-7 T 23-04-2016 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 RPE_RS06545 fceb4d67220c1bc70928891e617d3c79 500 SUPERFAMILY SSF51905 15 399 6.26E-57 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS06545 fceb4d67220c1bc70928891e617d3c79 500 PANTHER PTHR23023:SF30 15 490 4.6E-218 T 23-04-2016 RPE_RS06545 fceb4d67220c1bc70928891e617d3c79 500 Pfam PF13450 NAD(P)-binding Rossmann-like domain 22 70 8.0E-9 T 23-04-2016 RPE_RS06545 fceb4d67220c1bc70928891e617d3c79 500 PANTHER PTHR23023 15 490 4.6E-218 T 23-04-2016 RPE_RS12410 441503e80ba3012dab53ccb9168fe35c 719 PANTHER PTHR10887:SF284 313 572 3.0E-34 T 23-04-2016 RPE_RS12410 441503e80ba3012dab53ccb9168fe35c 719 PANTHER PTHR10887:SF284 647 700 3.0E-34 T 23-04-2016 RPE_RS12410 441503e80ba3012dab53ccb9168fe35c 719 SUPERFAMILY SSF52540 545 709 2.57E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12410 441503e80ba3012dab53ccb9168fe35c 719 SUPERFAMILY SSF52540 441 507 2.57E-48 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12410 441503e80ba3012dab53ccb9168fe35c 719 Gene3D G3DSA:3.40.50.300 635 703 3.7E-31 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12410 441503e80ba3012dab53ccb9168fe35c 719 Gene3D G3DSA:3.40.50.300 457 575 3.7E-31 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12410 441503e80ba3012dab53ccb9168fe35c 719 PANTHER PTHR10887 313 572 3.0E-34 T 23-04-2016 RPE_RS12410 441503e80ba3012dab53ccb9168fe35c 719 PANTHER PTHR10887 647 700 3.0E-34 T 23-04-2016 RPE_RS12410 441503e80ba3012dab53ccb9168fe35c 719 Gene3D G3DSA:3.40.50.300 313 456 1.7E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12410 441503e80ba3012dab53ccb9168fe35c 719 Pfam PF13604 AAA domain 313 515 9.9E-39 T 23-04-2016 RPE_RS12410 441503e80ba3012dab53ccb9168fe35c 719 Pfam PF13538 UvrD-like helicase C-terminal domain 647 692 9.5E-13 T 23-04-2016 IPR027785 UvrD-like helicase C-terminal domain RPE_RS12410 441503e80ba3012dab53ccb9168fe35c 719 SUPERFAMILY SSF52540 309 473 2.16E-23 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01110 09df774abe5bbf9dcc673c9f3bbc41d2 396 SUPERFAMILY SSF56601 7 382 1.05E-89 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS01110 09df774abe5bbf9dcc673c9f3bbc41d2 396 Gene3D G3DSA:3.40.710.10 8 373 7.5E-83 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS01110 09df774abe5bbf9dcc673c9f3bbc41d2 396 Pfam PF00144 Beta-lactamase 8 380 1.4E-63 T 23-04-2016 IPR001466 Beta-lactamase-related RPE_RS01110 09df774abe5bbf9dcc673c9f3bbc41d2 396 PANTHER PTHR22935 8 396 1.1E-100 T 23-04-2016 RPE_RS01110 09df774abe5bbf9dcc673c9f3bbc41d2 396 PANTHER PTHR22935:SF77 8 396 1.1E-100 T 23-04-2016 RPE_RS00510 45fb22254ce3355aab7e03e947ec6ea9 238 PANTHER PTHR30471 14 238 2.3E-83 T 23-04-2016 RPE_RS00510 45fb22254ce3355aab7e03e947ec6ea9 238 PANTHER PTHR30471:SF3 14 238 2.3E-83 T 23-04-2016 RPE_RS00510 45fb22254ce3355aab7e03e947ec6ea9 238 TIGRFAM TIGR00608 radc: DNA repair protein RadC 25 233 8.0E-69 T 23-04-2016 IPR001405 RadC protein RPE_RS00510 45fb22254ce3355aab7e03e947ec6ea9 238 SUPERFAMILY SSF47781 29 97 6.3E-6 T 23-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 RPE_RS00510 45fb22254ce3355aab7e03e947ec6ea9 238 SUPERFAMILY SSF102712 163 204 8.24E-6 T 23-04-2016 RPE_RS00510 45fb22254ce3355aab7e03e947ec6ea9 238 Pfam PF04002 RadC-like JAB domain 118 234 3.8E-44 T 23-04-2016 IPR025657 RadC-like JAB domain RPE_RS00510 45fb22254ce3355aab7e03e947ec6ea9 238 Gene3D G3DSA:3.40.140.10 114 235 8.4E-48 T 23-04-2016 RPE_RS00510 45fb22254ce3355aab7e03e947ec6ea9 238 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 187 192 - T 23-04-2016 IPR020891 Uncharacterised protein family UPF0758, conserved site RPE_RS22095 de9fb7ad2927a880da147c6046d4d699 503 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 63 221 5.8E-22 T 23-04-2016 RPE_RS22095 de9fb7ad2927a880da147c6046d4d699 503 PANTHER PTHR33908:SF2 2 500 2.8E-106 T 23-04-2016 RPE_RS22095 de9fb7ad2927a880da147c6046d4d699 503 PANTHER PTHR33908 2 500 2.8E-106 T 23-04-2016 RPE_RS15020 b079ea9e263c019da39b15ce51bca07d 146 SUPERFAMILY SSF52172 4 132 7.12E-27 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS15020 b079ea9e263c019da39b15ce51bca07d 146 PANTHER PTHR26402 5 132 3.1E-31 T 23-04-2016 RPE_RS15020 b079ea9e263c019da39b15ce51bca07d 146 Gene3D G3DSA:3.40.50.2300 2 132 8.4E-32 T 23-04-2016 RPE_RS15020 b079ea9e263c019da39b15ce51bca07d 146 SMART SM00448 5 129 1.0E-22 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS15020 b079ea9e263c019da39b15ce51bca07d 146 Pfam PF00072 Response regulator receiver domain 7 129 4.4E-19 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS15415 1ef9b606f8065945403ebd51059652e5 360 PANTHER PTHR30574 6 346 2.2E-44 T 23-04-2016 RPE_RS15415 1ef9b606f8065945403ebd51059652e5 360 Pfam PF04143 Sulphur transport 33 340 1.8E-49 T 23-04-2016 IPR007272 Sulphur transport domain RPE_RS15415 1ef9b606f8065945403ebd51059652e5 360 PANTHER PTHR30574:SF1 6 346 2.2E-44 T 23-04-2016 RPE_RS07915 74cccf245c1ca27b688e3f836b13090c 193 PANTHER PTHR36917 3 187 1.6E-36 T 23-04-2016 RPE_RS07915 74cccf245c1ca27b688e3f836b13090c 193 Pfam PF04279 Intracellular septation protein A 7 147 2.5E-16 T 23-04-2016 IPR006008 Intracellular septation protein A GO:0016021 RPE_RS07915 74cccf245c1ca27b688e3f836b13090c 193 PANTHER PTHR36917:SF1 3 187 1.6E-36 T 23-04-2016 RPE_RS09340 4065a861f9efca04851bf4fce695aad6 163 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 6 135 8.2E-33 T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RPE_RS09340 4065a861f9efca04851bf4fce695aad6 163 Gene3D G3DSA:3.30.70.560 3 155 1.0E-46 T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RPE_RS09340 4065a861f9efca04851bf4fce695aad6 163 PANTHER PTHR20941 1 159 2.9E-58 T 23-04-2016 RPE_RS09340 4065a861f9efca04851bf4fce695aad6 163 SUPERFAMILY SSF55083 1 156 4.32E-47 T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RPE_RS09340 4065a861f9efca04851bf4fce695aad6 163 PANTHER PTHR20941:SF10 1 159 2.9E-58 T 23-04-2016 RPE_RS09340 4065a861f9efca04851bf4fce695aad6 163 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 135 9.7E-37 T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RPE_RS09340 4065a861f9efca04851bf4fce695aad6 163 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 90 101 - T 23-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RPE_RS05610 9471d095097eece4863fefd91bee6115 334 Pfam PF01757 Acyltransferase family 2 265 4.8E-22 T 23-04-2016 IPR002656 Acyltransferase 3 GO:0016747 RPE_RS05610 9471d095097eece4863fefd91bee6115 334 PANTHER PTHR23028:SF53 2 314 9.6E-27 T 23-04-2016 RPE_RS05610 9471d095097eece4863fefd91bee6115 334 PANTHER PTHR23028 2 314 9.6E-27 T 23-04-2016 RPE_RS14580 6c3b5f48839525926c0a5c22f2963f18 476 SUPERFAMILY SSF51905 3 381 3.37E-22 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS14580 6c3b5f48839525926c0a5c22f2963f18 476 PANTHER PTHR11806 1 430 1.6E-208 T 23-04-2016 RPE_RS14580 6c3b5f48839525926c0a5c22f2963f18 476 Gene3D G3DSA:3.50.50.60 26 67 2.4E-5 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS14580 6c3b5f48839525926c0a5c22f2963f18 476 PANTHER PTHR11806:SF2 1 430 1.6E-208 T 23-04-2016 RPE_RS14580 6c3b5f48839525926c0a5c22f2963f18 476 Gene3D G3DSA:3.50.50.60 103 131 6.9E-7 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS14580 6c3b5f48839525926c0a5c22f2963f18 476 Gene3D G3DSA:3.50.50.60 7 25 6.9E-7 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS14580 6c3b5f48839525926c0a5c22f2963f18 476 Gene3D G3DSA:3.50.50.60 198 233 3.0E-6 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS14580 6c3b5f48839525926c0a5c22f2963f18 476 TIGRFAM TIGR00137 gid_trmFO: tRNA:m(5)U-54 methyltransferase 8 466 8.4E-168 T 23-04-2016 IPR004417 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO GO:0005737|GO:0008033|GO:0047151|GO:0050660 RPE_RS14580 6c3b5f48839525926c0a5c22f2963f18 476 Hamap MF_01037 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO [trmFO]. 10 468 35.098 T 23-04-2016 IPR004417 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO GO:0005737|GO:0008033|GO:0047151|GO:0050660 RPE_RS14580 6c3b5f48839525926c0a5c22f2963f18 476 Pfam PF01134 Glucose inhibited division protein A 10 381 3.4E-106 T 23-04-2016 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 RPE_RS16865 93243754b1279fecfce30e06eb01220d 205 Gene3D G3DSA:1.10.357.10 1 195 4.4E-27 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RPE_RS16865 93243754b1279fecfce30e06eb01220d 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 60 2.6E-8 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS16865 93243754b1279fecfce30e06eb01220d 205 PANTHER PTHR30055 1 196 9.8E-20 T 23-04-2016 RPE_RS16865 93243754b1279fecfce30e06eb01220d 205 Pfam PF13977 Bacterial transcriptional repressor 89 179 3.2E-6 T 23-04-2016 RPE_RS16865 93243754b1279fecfce30e06eb01220d 205 SUPERFAMILY SSF48498 86 194 1.41E-7 T 23-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RPE_RS16865 93243754b1279fecfce30e06eb01220d 205 SUPERFAMILY SSF46689 1 76 9.71E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS01075 89d2dfda413019b271f334d5482edd14 164 Pfam PF00582 Universal stress protein family 15 152 6.6E-10 T 23-04-2016 IPR006016 UspA GO:0006950 RPE_RS01075 89d2dfda413019b271f334d5482edd14 164 SUPERFAMILY SSF52402 15 153 3.35E-12 T 23-04-2016 RPE_RS01075 89d2dfda413019b271f334d5482edd14 164 Gene3D G3DSA:3.40.50.620 15 152 7.8E-14 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS14665 af8ffb579d32bd9a5d99a443e0d3ecfe 253 SUPERFAMILY SSF52467 8 250 2.31E-75 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RPE_RS14665 af8ffb579d32bd9a5d99a443e0d3ecfe 253 PANTHER PTHR11085 10 247 8.3E-84 T 23-04-2016 IPR003000 Sirtuin family GO:0070403 RPE_RS14665 af8ffb579d32bd9a5d99a443e0d3ecfe 253 Pfam PF02146 Sir2 family 28 206 2.1E-42 T 23-04-2016 IPR003000 Sirtuin family GO:0070403 RPE_RS14665 af8ffb579d32bd9a5d99a443e0d3ecfe 253 Hamap MF_01968 NAD-dependent protein deacetylase [cobB]. 12 251 56.456 T 23-04-2016 IPR028628 Sirtuin, class U GO:0034979|GO:0051287 RPE_RS14665 af8ffb579d32bd9a5d99a443e0d3ecfe 253 Gene3D G3DSA:3.40.50.1220 8 38 6.1E-45 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RPE_RS14665 af8ffb579d32bd9a5d99a443e0d3ecfe 253 Gene3D G3DSA:3.40.50.1220 182 247 6.1E-45 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RPE_RS14665 af8ffb579d32bd9a5d99a443e0d3ecfe 253 Gene3D G3DSA:3.40.50.1220 88 127 6.1E-45 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RPE_RS14665 af8ffb579d32bd9a5d99a443e0d3ecfe 253 Gene3D G3DSA:3.30.1600.10 39 74 3.3E-16 T 23-04-2016 IPR026591 Sirtuin family, catalytic core small domain RPE_RS14665 af8ffb579d32bd9a5d99a443e0d3ecfe 253 Gene3D G3DSA:3.30.1600.10 128 175 3.3E-16 T 23-04-2016 IPR026591 Sirtuin family, catalytic core small domain RPE_RS06915 c061a17b819f105ee902ac7347380f66 367 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 68 280 1.4E-17 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RPE_RS06915 c061a17b819f105ee902ac7347380f66 367 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 42 361 2.0E-68 T 23-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RPE_RS06915 c061a17b819f105ee902ac7347380f66 367 PANTHER PTHR30158:SF8 1 362 3.1E-112 T 23-04-2016 RPE_RS06915 c061a17b819f105ee902ac7347380f66 367 Gene3D G3DSA:2.40.50.100 69 100 4.2E-15 T 23-04-2016 RPE_RS06915 c061a17b819f105ee902ac7347380f66 367 Gene3D G3DSA:2.40.50.100 175 206 4.2E-15 T 23-04-2016 RPE_RS06915 c061a17b819f105ee902ac7347380f66 367 PANTHER PTHR30158 1 362 3.1E-112 T 23-04-2016 RPE_RS06915 c061a17b819f105ee902ac7347380f66 367 SUPERFAMILY SSF111369 56 284 3.53E-22 T 23-04-2016 RPE_RS15875 4d7479589e029eb1fc901686c97d4522 785 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 22 136 8.4E-25 T 23-04-2016 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 RPE_RS15875 4d7479589e029eb1fc901686c97d4522 785 Gene3D G3DSA:3.40.640.10 142 456 2.4E-105 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS15875 4d7479589e029eb1fc901686c97d4522 785 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 638 769 1.8E-42 T 23-04-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 RPE_RS15875 4d7479589e029eb1fc901686c97d4522 785 PANTHER PTHR11751:SF425 143 471 1.3E-112 T 23-04-2016 RPE_RS15875 4d7479589e029eb1fc901686c97d4522 785 Gene3D G3DSA:3.90.1150.10 459 655 1.0E-64 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS15875 4d7479589e029eb1fc901686c97d4522 785 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 142 612 9.3E-148 T 23-04-2016 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 RPE_RS15875 4d7479589e029eb1fc901686c97d4522 785 Gene3D G3DSA:3.90.100.10 656 785 2.6E-30 T 23-04-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 RPE_RS15875 4d7479589e029eb1fc901686c97d4522 785 PIRSF PIRSF009393 2 785 2.2E-276 T 23-04-2016 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 RPE_RS15875 4d7479589e029eb1fc901686c97d4522 785 SUPERFAMILY SSF53383 142 630 2.03E-108 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS15875 4d7479589e029eb1fc901686c97d4522 785 PANTHER PTHR11751 143 471 1.3E-112 T 23-04-2016 RPE_RS15875 4d7479589e029eb1fc901686c97d4522 785 SUPERFAMILY SSF55904 636 784 3.79E-37 T 23-04-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 RPE_RS15875 4d7479589e029eb1fc901686c97d4522 785 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 388 402 - T 23-04-2016 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 RPE_RS16345 d19191674e651ca78cb896b0c68ea4f2 76 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 5 55 1.5E-19 T 23-04-2016 IPR010260 Prophage CP4-57 regulatory protein (AlpA) RPE_RS16345 d19191674e651ca78cb896b0c68ea4f2 76 PANTHER PTHR36154 1 69 5.5E-14 T 23-04-2016 RPE_RS20675 dd4cabfb30cf855f5ef6cb9d3a0bd279 147 PANTHER PTHR33653 1 147 2.4E-41 T 23-04-2016 RPE_RS20675 dd4cabfb30cf855f5ef6cb9d3a0bd279 147 Pfam PF01850 PIN domain 5 126 4.0E-15 T 23-04-2016 IPR002716 PIN domain RPE_RS20675 dd4cabfb30cf855f5ef6cb9d3a0bd279 147 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 4 138 10.962 T 23-04-2016 IPR022907 VapC family GO:0004540 RPE_RS20675 dd4cabfb30cf855f5ef6cb9d3a0bd279 147 PANTHER PTHR33653:SF1 1 147 2.4E-41 T 23-04-2016 RPE_RS20675 dd4cabfb30cf855f5ef6cb9d3a0bd279 147 SUPERFAMILY SSF88723 4 139 8.69E-29 T 23-04-2016 IPR029060 PIN domain-like RPE_RS20675 dd4cabfb30cf855f5ef6cb9d3a0bd279 147 Gene3D G3DSA:3.40.50.1010 4 131 1.3E-25 T 23-04-2016 IPR029060 PIN domain-like RPE_RS00615 0b563c608ce604b21e2f81984401356c 493 PANTHER PTHR22726 21 295 6.2E-79 T 23-04-2016 RPE_RS00615 0b563c608ce604b21e2f81984401356c 493 Pfam PF01435 Peptidase family M48 79 261 1.5E-28 T 23-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RPE_RS00615 0b563c608ce604b21e2f81984401356c 493 Gene3D G3DSA:3.30.2010.10 74 153 9.4E-16 T 23-04-2016 RPE_RS00615 0b563c608ce604b21e2f81984401356c 493 PANTHER PTHR22726:SF9 21 295 6.2E-79 T 23-04-2016 RPE_RS22555 43a601ed5cdd55112f5c1e6ba86a390e 435 PANTHER PTHR10617:SF98 1 408 4.2E-143 T 23-04-2016 RPE_RS22555 43a601ed5cdd55112f5c1e6ba86a390e 435 PANTHER PTHR10617 1 408 4.2E-143 T 23-04-2016 RPE_RS22555 43a601ed5cdd55112f5c1e6ba86a390e 435 SUPERFAMILY SSF54373 183 286 5.1E-23 T 23-04-2016 RPE_RS22555 43a601ed5cdd55112f5c1e6ba86a390e 435 Gene3D G3DSA:3.50.50.60 99 201 4.3E-26 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS22555 43a601ed5cdd55112f5c1e6ba86a390e 435 Gene3D G3DSA:3.50.50.60 3 67 4.3E-26 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS22555 43a601ed5cdd55112f5c1e6ba86a390e 435 SUPERFAMILY SSF51905 3 184 5.6E-40 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS22555 43a601ed5cdd55112f5c1e6ba86a390e 435 SUPERFAMILY SSF51905 286 376 5.6E-40 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS22555 43a601ed5cdd55112f5c1e6ba86a390e 435 Pfam PF01494 FAD binding domain 7 183 8.3E-8 T 23-04-2016 IPR002938 FAD-binding domain GO:0071949 RPE_RS22555 43a601ed5cdd55112f5c1e6ba86a390e 435 Gene3D G3DSA:3.30.9.10 218 341 8.4E-16 T 23-04-2016 RPE_RS17520 60fc0f9648c5a8fc3ddca4069806a745 575 SUPERFAMILY SSF52540 391 545 1.68E-14 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS17520 60fc0f9648c5a8fc3ddca4069806a745 575 Pfam PF02706 Chain length determinant protein 53 223 2.4E-14 T 23-04-2016 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 RPE_RS17520 60fc0f9648c5a8fc3ddca4069806a745 575 Gene3D G3DSA:3.40.50.300 391 543 3.1E-12 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS17520 60fc0f9648c5a8fc3ddca4069806a745 575 PANTHER PTHR32309 204 561 6.4E-25 T 23-04-2016 RPE_RS22870 b44f99f7bbd615cf1179b8cc690f604a 779 PANTHER PTHR32552:SF8 1 351 2.0E-135 T 23-04-2016 IPR030148 Catecholate siderophore receptor Fiu GO:0004872|GO:0005506|GO:0009279|GO:0015891|GO:0016021 RPE_RS22870 b44f99f7bbd615cf1179b8cc690f604a 779 PANTHER PTHR32552:SF8 372 509 2.0E-135 T 23-04-2016 IPR030148 Catecholate siderophore receptor Fiu GO:0004872|GO:0005506|GO:0009279|GO:0015891|GO:0016021 RPE_RS22870 b44f99f7bbd615cf1179b8cc690f604a 779 PANTHER PTHR32552:SF8 526 779 2.0E-135 T 23-04-2016 IPR030148 Catecholate siderophore receptor Fiu GO:0004872|GO:0005506|GO:0009279|GO:0015891|GO:0016021 RPE_RS22870 b44f99f7bbd615cf1179b8cc690f604a 779 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 85 779 3.4E-92 T 23-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 RPE_RS22870 b44f99f7bbd615cf1179b8cc690f604a 779 SUPERFAMILY SSF56935 77 779 2.98E-119 T 23-04-2016 RPE_RS22870 b44f99f7bbd615cf1179b8cc690f604a 779 Gene3D G3DSA:2.170.130.10 67 187 2.3E-33 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RPE_RS22870 b44f99f7bbd615cf1179b8cc690f604a 779 Pfam PF00593 TonB dependent receptor 545 777 2.4E-26 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RPE_RS22870 b44f99f7bbd615cf1179b8cc690f604a 779 Gene3D G3DSA:2.40.170.20 197 779 7.9E-131 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RPE_RS22870 b44f99f7bbd615cf1179b8cc690f604a 779 Pfam PF07715 TonB-dependent Receptor Plug Domain 84 181 1.4E-22 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RPE_RS22870 b44f99f7bbd615cf1179b8cc690f604a 779 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 762 779 - T 23-04-2016 IPR010917 TonB-dependent receptor, conserved site RPE_RS22870 b44f99f7bbd615cf1179b8cc690f604a 779 PANTHER PTHR32552 1 351 2.0E-135 T 23-04-2016 RPE_RS22870 b44f99f7bbd615cf1179b8cc690f604a 779 PANTHER PTHR32552 372 509 2.0E-135 T 23-04-2016 RPE_RS22870 b44f99f7bbd615cf1179b8cc690f604a 779 PANTHER PTHR32552 526 779 2.0E-135 T 23-04-2016 RPE_RS24430 b9a81384e2d594c9f579b5c5dfc6a578 275 Gene3D G3DSA:3.40.50.300 22 268 1.1E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS24430 b9a81384e2d594c9f579b5c5dfc6a578 275 PANTHER PTHR24220:SF560 30 270 1.0E-139 T 23-04-2016 RPE_RS24430 b9a81384e2d594c9f579b5c5dfc6a578 275 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 30 275 1.3E-120 T 23-04-2016 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 RPE_RS24430 b9a81384e2d594c9f579b5c5dfc6a578 275 SUPERFAMILY SSF52540 30 269 2.42E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS24430 b9a81384e2d594c9f579b5c5dfc6a578 275 PANTHER PTHR24220 30 270 1.0E-139 T 23-04-2016 RPE_RS24430 b9a81384e2d594c9f579b5c5dfc6a578 275 ProSitePatterns PS00211 ABC transporters family signature. 172 186 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS24430 b9a81384e2d594c9f579b5c5dfc6a578 275 SMART SM00382 53 255 1.0E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS24430 b9a81384e2d594c9f579b5c5dfc6a578 275 Pfam PF00005 ABC transporter 44 199 3.2E-32 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS13630 d8470cda0f9f4633825e6ea3be019d59 134 Pfam PF13683 Integrase core domain 13 78 2.9E-13 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 RPE_RS13630 d8470cda0f9f4633825e6ea3be019d59 134 SUPERFAMILY SSF53098 6 89 2.85E-18 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RPE_RS13630 d8470cda0f9f4633825e6ea3be019d59 134 Gene3D G3DSA:3.30.420.10 5 86 1.7E-9 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RPE_RS15370 f11a248d6e79081d07ff82ef9d9610f4 194 Gene3D G3DSA:1.20.1440.20 26 179 4.3E-45 T 23-04-2016 IPR023353 LemA-like domain RPE_RS15370 f11a248d6e79081d07ff82ef9d9610f4 194 PANTHER PTHR34478 1 179 9.5E-46 T 23-04-2016 RPE_RS15370 f11a248d6e79081d07ff82ef9d9610f4 194 PANTHER PTHR34478:SF2 1 179 9.5E-46 T 23-04-2016 RPE_RS15370 f11a248d6e79081d07ff82ef9d9610f4 194 Pfam PF04011 LemA family 16 179 1.8E-45 T 23-04-2016 IPR007156 LemA RPE_RS15370 f11a248d6e79081d07ff82ef9d9610f4 194 SUPERFAMILY SSF140478 33 179 9.94E-41 T 23-04-2016 IPR023353 LemA-like domain RPE_RS06870 de8ad570614d2b3242e3fe09a84a8574 260 Pfam PF12697 Alpha/beta hydrolase family 26 254 8.6E-22 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS06870 de8ad570614d2b3242e3fe09a84a8574 260 Gene3D G3DSA:3.40.50.1820 3 259 2.2E-53 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS06870 de8ad570614d2b3242e3fe09a84a8574 260 SUPERFAMILY SSF53474 4 259 9.89E-52 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS06870 de8ad570614d2b3242e3fe09a84a8574 260 PRINTS PR00412 Epoxide hydrolase signature 239 260 9.7E-7 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RPE_RS06870 de8ad570614d2b3242e3fe09a84a8574 260 PRINTS PR00412 Epoxide hydrolase signature 50 65 9.7E-7 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RPE_RS06870 de8ad570614d2b3242e3fe09a84a8574 260 PRINTS PR00412 Epoxide hydrolase signature 93 106 9.7E-7 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RPE_RS06870 de8ad570614d2b3242e3fe09a84a8574 260 PRINTS PR00111 Alpha/beta hydrolase fold signature 50 65 3.2E-12 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS06870 de8ad570614d2b3242e3fe09a84a8574 260 PRINTS PR00111 Alpha/beta hydrolase fold signature 208 222 3.2E-12 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS06870 de8ad570614d2b3242e3fe09a84a8574 260 PRINTS PR00111 Alpha/beta hydrolase fold signature 93 106 3.2E-12 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS06870 de8ad570614d2b3242e3fe09a84a8574 260 PRINTS PR00111 Alpha/beta hydrolase fold signature 107 120 3.2E-12 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS06870 de8ad570614d2b3242e3fe09a84a8574 260 PANTHER PTHR10992 3 259 9.1E-41 T 23-04-2016 RPE_RS15795 1d684cd1d84e03bd256dfd9ae704bb07 111 SUPERFAMILY SSF54909 1 103 2.0E-31 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RPE_RS15795 1d684cd1d84e03bd256dfd9ae704bb07 111 PANTHER PTHR34474 1 104 2.4E-29 T 23-04-2016 RPE_RS15795 1d684cd1d84e03bd256dfd9ae704bb07 111 PANTHER PTHR34474:SF2 1 104 2.4E-29 T 23-04-2016 RPE_RS15795 1d684cd1d84e03bd256dfd9ae704bb07 111 Gene3D G3DSA:3.30.70.900 1 104 4.3E-32 T 23-04-2016 RPE_RS15795 1d684cd1d84e03bd256dfd9ae704bb07 111 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 78 2.6E-18 T 23-04-2016 IPR007138 Antibiotic biosynthesis monooxygenase domain RPE_RS08805 9a5f845733a4669fa5dcb2df56f2654e 268 SUPERFAMILY SSF52172 139 259 4.41E-21 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS08805 9a5f845733a4669fa5dcb2df56f2654e 268 PIRSF PIRSF036400 1 262 1.2E-127 T 23-04-2016 IPR014605 Signal transduction response regulator PhyR-like, alphaproteobacteria RPE_RS08805 9a5f845733a4669fa5dcb2df56f2654e 268 Pfam PF00072 Response regulator receiver domain 140 225 3.2E-12 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS08805 9a5f845733a4669fa5dcb2df56f2654e 268 PANTHER PTHR26402:SF413 138 245 1.2E-36 T 23-04-2016 RPE_RS08805 9a5f845733a4669fa5dcb2df56f2654e 268 Gene3D G3DSA:3.40.50.2300 138 259 6.6E-21 T 23-04-2016 RPE_RS08805 9a5f845733a4669fa5dcb2df56f2654e 268 SMART SM00448 138 247 1.3E-11 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS08805 9a5f845733a4669fa5dcb2df56f2654e 268 PANTHER PTHR26402 138 245 1.2E-36 T 23-04-2016 RPE_RS12670 b3ca43294827df5399043a2996fde2ea 321 PANTHER PTHR34203 84 235 3.6E-16 T 23-04-2016 RPE_RS12670 b3ca43294827df5399043a2996fde2ea 321 SUPERFAMILY SSF53335 31 272 3.25E-36 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS12670 b3ca43294827df5399043a2996fde2ea 321 PANTHER PTHR34203:SF2 84 235 3.6E-16 T 23-04-2016 RPE_RS12670 b3ca43294827df5399043a2996fde2ea 321 Pfam PF05050 Methyltransferase FkbM domain 110 247 2.6E-12 T 23-04-2016 IPR006342 Methyltransferase FkbM KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- RPE_RS12670 b3ca43294827df5399043a2996fde2ea 321 Gene3D G3DSA:3.40.50.150 90 262 6.6E-29 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS12670 b3ca43294827df5399043a2996fde2ea 321 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 108 243 3.0E-19 T 23-04-2016 IPR006342 Methyltransferase FkbM KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- RPE_RS13725 cd30d7a078fdf63535a2241716aacbbc 408 PIRSF PIRSF003085 10 408 3.8E-130 T 23-04-2016 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 RPE_RS13725 cd30d7a078fdf63535a2241716aacbbc 408 PANTHER PTHR10108 63 321 4.0E-101 T 23-04-2016 RPE_RS13725 cd30d7a078fdf63535a2241716aacbbc 408 PANTHER PTHR10108 338 406 4.0E-101 T 23-04-2016 RPE_RS13725 cd30d7a078fdf63535a2241716aacbbc 408 Gene3D G3DSA:3.40.50.150 129 406 4.3E-95 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS13725 cd30d7a078fdf63535a2241716aacbbc 408 SUPERFAMILY SSF53335 141 406 8.98E-77 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS13725 cd30d7a078fdf63535a2241716aacbbc 408 PANTHER PTHR10108:SF795 63 321 4.0E-101 T 23-04-2016 RPE_RS13725 cd30d7a078fdf63535a2241716aacbbc 408 PANTHER PTHR10108:SF795 338 406 4.0E-101 T 23-04-2016 RPE_RS13725 cd30d7a078fdf63535a2241716aacbbc 408 Pfam PF02353 Mycolic acid cyclopropane synthetase 132 402 4.7E-87 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS21130 17e7ba7ceb95ee4a9e6242c9e6900c35 297 PANTHER PTHR11795 1 297 3.4E-140 T 23-04-2016 RPE_RS21130 17e7ba7ceb95ee4a9e6242c9e6900c35 297 PANTHER PTHR11795:SF398 1 297 3.4E-140 T 23-04-2016 RPE_RS21130 17e7ba7ceb95ee4a9e6242c9e6900c35 297 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 281 5.4E-32 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RPE_RS01955 439fefd566e1d7208ebad23f2214af4c 888 Pfam PF09334 tRNA synthetases class I (M) 38 172 3.0E-15 T 23-04-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS01955 439fefd566e1d7208ebad23f2214af4c 888 Pfam PF08264 Anticodon-binding domain of tRNA 731 850 6.6E-13 T 23-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 RPE_RS01955 439fefd566e1d7208ebad23f2214af4c 888 PANTHER PTHR11946:SF7 1 207 0.0 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RPE_RS01955 439fefd566e1d7208ebad23f2214af4c 888 PANTHER PTHR11946:SF7 246 590 0.0 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RPE_RS01955 439fefd566e1d7208ebad23f2214af4c 888 PANTHER PTHR11946:SF7 643 888 0.0 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RPE_RS01955 439fefd566e1d7208ebad23f2214af4c 888 SUPERFAMILY SSF50677 227 414 7.12E-43 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RPE_RS01955 439fefd566e1d7208ebad23f2214af4c 888 PANTHER PTHR11946 1 207 0.0 T 23-04-2016 RPE_RS01955 439fefd566e1d7208ebad23f2214af4c 888 PANTHER PTHR11946 246 590 0.0 T 23-04-2016 RPE_RS01955 439fefd566e1d7208ebad23f2214af4c 888 PANTHER PTHR11946 643 888 0.0 T 23-04-2016 RPE_RS01955 439fefd566e1d7208ebad23f2214af4c 888 SUPERFAMILY SSF47323 688 888 3.92E-29 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS01955 439fefd566e1d7208ebad23f2214af4c 888 Gene3D G3DSA:3.40.50.620 643 672 3.1E-146 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS01955 439fefd566e1d7208ebad23f2214af4c 888 Gene3D G3DSA:3.40.50.620 439 589 3.1E-146 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS01955 439fefd566e1d7208ebad23f2214af4c 888 Gene3D G3DSA:3.40.50.620 4 223 3.1E-146 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS01955 439fefd566e1d7208ebad23f2214af4c 888 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 6 888 1.2E-300 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RPE_RS01955 439fefd566e1d7208ebad23f2214af4c 888 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 43 54 - T 23-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS01955 439fefd566e1d7208ebad23f2214af4c 888 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 5 888 22.085 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RPE_RS01955 439fefd566e1d7208ebad23f2214af4c 888 SUPERFAMILY SSF52374 5 227 1.45E-144 T 23-04-2016 RPE_RS01955 439fefd566e1d7208ebad23f2214af4c 888 SUPERFAMILY SSF52374 430 692 1.45E-144 T 23-04-2016 RPE_RS01955 439fefd566e1d7208ebad23f2214af4c 888 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 222 413 1.1E-65 T 23-04-2016 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 RPE_RS01955 439fefd566e1d7208ebad23f2214af4c 888 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 644 683 4.6E-7 T 23-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS01955 439fefd566e1d7208ebad23f2214af4c 888 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 432 593 3.6E-8 T 23-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS01955 439fefd566e1d7208ebad23f2214af4c 888 Gene3D G3DSA:1.10.730.10 673 824 2.1E-36 T 23-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS01955 439fefd566e1d7208ebad23f2214af4c 888 PRINTS PR00985 Leucyl-tRNA synthetase signature 186 199 1.5E-44 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RPE_RS01955 439fefd566e1d7208ebad23f2214af4c 888 PRINTS PR00985 Leucyl-tRNA synthetase signature 573 583 1.5E-44 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RPE_RS01955 439fefd566e1d7208ebad23f2214af4c 888 PRINTS PR00985 Leucyl-tRNA synthetase signature 154 170 1.5E-44 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RPE_RS01955 439fefd566e1d7208ebad23f2214af4c 888 PRINTS PR00985 Leucyl-tRNA synthetase signature 540 562 1.5E-44 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RPE_RS01955 439fefd566e1d7208ebad23f2214af4c 888 PRINTS PR00985 Leucyl-tRNA synthetase signature 216 235 1.5E-44 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RPE_RS01955 439fefd566e1d7208ebad23f2214af4c 888 PRINTS PR00985 Leucyl-tRNA synthetase signature 128 145 1.5E-44 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RPE_RS01955 439fefd566e1d7208ebad23f2214af4c 888 PRINTS PR00985 Leucyl-tRNA synthetase signature 501 519 1.5E-44 T 23-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RPE_RS01955 439fefd566e1d7208ebad23f2214af4c 888 Gene3D G3DSA:3.90.740.10 224 438 9.1E-47 T 23-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RPE_RS16595 8d45989778a3d4a4c9ab91cf4cf4a7ee 428 Pfam PF00990 Diguanylate cyclase, GGDEF domain 229 388 1.1E-42 T 23-04-2016 IPR000160 GGDEF domain RPE_RS16595 8d45989778a3d4a4c9ab91cf4cf4a7ee 428 PANTHER PTHR10799 135 389 7.2E-36 T 23-04-2016 RPE_RS16595 8d45989778a3d4a4c9ab91cf4cf4a7ee 428 PANTHER PTHR10799:SF774 135 389 7.2E-36 T 23-04-2016 RPE_RS16595 8d45989778a3d4a4c9ab91cf4cf4a7ee 428 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 227 391 5.3E-43 T 23-04-2016 IPR000160 GGDEF domain RPE_RS16595 8d45989778a3d4a4c9ab91cf4cf4a7ee 428 SMART SM00267 218 394 4.7E-59 T 23-04-2016 IPR000160 GGDEF domain RPE_RS16595 8d45989778a3d4a4c9ab91cf4cf4a7ee 428 Gene3D G3DSA:3.30.70.270 231 396 4.8E-54 T 23-04-2016 RPE_RS16595 8d45989778a3d4a4c9ab91cf4cf4a7ee 428 SUPERFAMILY SSF55073 234 394 1.33E-46 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS09705 05972f24e892505c0a42ba878e0a9b13 368 TIGRFAM TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI 2 116 1.2E-31 T 23-04-2016 IPR017560 Cytochrome c-type biogenesis protein CcmI RPE_RS09705 05972f24e892505c0a42ba878e0a9b13 368 SUPERFAMILY SSF48452 143 260 8.86E-17 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS09705 05972f24e892505c0a42ba878e0a9b13 368 SUPERFAMILY SSF48452 300 346 8.86E-17 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS09705 05972f24e892505c0a42ba878e0a9b13 368 Gene3D G3DSA:1.25.40.10 136 345 2.6E-19 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS09705 05972f24e892505c0a42ba878e0a9b13 368 Pfam PF13432 Tetratricopeptide repeat 159 191 0.0022 T 23-04-2016 RPE_RS09705 05972f24e892505c0a42ba878e0a9b13 368 Pfam PF13432 Tetratricopeptide repeat 207 257 4.0E-4 T 23-04-2016 RPE_RS09705 05972f24e892505c0a42ba878e0a9b13 368 PANTHER PTHR23083 146 257 1.7E-12 T 23-04-2016 RPE_RS09705 05972f24e892505c0a42ba878e0a9b13 368 PANTHER PTHR23083 317 357 1.7E-12 T 23-04-2016 RPE_RS03955 a5408c92f07dfe83314fdb6f1f7fcc7e 180 SUPERFAMILY SSF158442 25 168 4.58E-31 T 23-04-2016 RPE_RS03955 a5408c92f07dfe83314fdb6f1f7fcc7e 180 Pfam PF02600 Disulfide bond formation protein DsbB 23 169 3.2E-29 T 23-04-2016 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 RPE_RS03955 a5408c92f07dfe83314fdb6f1f7fcc7e 180 Gene3D G3DSA:1.20.1550.10 23 177 1.8E-15 T 23-04-2016 IPR023380 Disulphide bond formation protein DsbB-like domain RPE_RS03955 a5408c92f07dfe83314fdb6f1f7fcc7e 180 PIRSF PIRSF033913 8 177 1.5E-39 T 23-04-2016 IPR024199 Uncharacterised conserved protein, DsbB-like RPE_RS02290 8f6ba33ecc83cdb20bf9988c5a43ee0a 325 Pfam PF01039 Carboxyl transferase domain 97 241 2.2E-17 T 23-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RPE_RS02290 8f6ba33ecc83cdb20bf9988c5a43ee0a 325 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 4 282 4.3E-106 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RPE_RS02290 8f6ba33ecc83cdb20bf9988c5a43ee0a 325 PANTHER PTHR22855:SF17 1 287 2.0E-140 T 23-04-2016 RPE_RS02290 8f6ba33ecc83cdb20bf9988c5a43ee0a 325 PANTHER PTHR22855 1 287 2.0E-140 T 23-04-2016 RPE_RS02290 8f6ba33ecc83cdb20bf9988c5a43ee0a 325 SUPERFAMILY SSF52096 24 282 7.32E-81 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS02290 8f6ba33ecc83cdb20bf9988c5a43ee0a 325 Gene3D G3DSA:3.90.226.10 18 283 5.4E-67 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS02290 8f6ba33ecc83cdb20bf9988c5a43ee0a 325 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 228 239 5.5E-37 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RPE_RS02290 8f6ba33ecc83cdb20bf9988c5a43ee0a 325 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 162 180 5.5E-37 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RPE_RS02290 8f6ba33ecc83cdb20bf9988c5a43ee0a 325 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 199 216 5.5E-37 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RPE_RS02290 8f6ba33ecc83cdb20bf9988c5a43ee0a 325 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 250 259 5.5E-37 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RPE_RS02290 8f6ba33ecc83cdb20bf9988c5a43ee0a 325 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 128 142 5.5E-37 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RPE_RS02290 8f6ba33ecc83cdb20bf9988c5a43ee0a 325 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 1 280 36.582 T 23-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RPE_RS18470 7964daca4a7fd25d42d8d34137619b63 244 Gene3D G3DSA:3.40.50.720 3 244 3.9E-73 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS18470 7964daca4a7fd25d42d8d34137619b63 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 2.9E-9 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18470 7964daca4a7fd25d42d8d34137619b63 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 2.9E-9 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18470 7964daca4a7fd25d42d8d34137619b63 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 2.9E-9 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18470 7964daca4a7fd25d42d8d34137619b63 244 PANTHER PTHR24321 3 244 3.3E-121 T 23-04-2016 RPE_RS18470 7964daca4a7fd25d42d8d34137619b63 244 SUPERFAMILY SSF51735 6 244 8.84E-72 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS18470 7964daca4a7fd25d42d8d34137619b63 244 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 243 1.0E-60 T 23-04-2016 RPE_RS18470 7964daca4a7fd25d42d8d34137619b63 244 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 135 163 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RPE_RS18470 7964daca4a7fd25d42d8d34137619b63 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 1.9E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18470 7964daca4a7fd25d42d8d34137619b63 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.9E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18470 7964daca4a7fd25d42d8d34137619b63 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 1.9E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18470 7964daca4a7fd25d42d8d34137619b63 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 1.9E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18470 7964daca4a7fd25d42d8d34137619b63 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 1.9E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS18470 7964daca4a7fd25d42d8d34137619b63 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 1.9E-38 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS21345 71aca2dba44f2348abfe05b60cba5db1 470 SUPERFAMILY SSF51182 188 469 2.76E-74 T 23-04-2016 IPR011051 RmlC-like cupin domain RPE_RS21345 71aca2dba44f2348abfe05b60cba5db1 470 Pfam PF01050 Mannose-6-phosphate isomerase 316 465 3.5E-66 T 23-04-2016 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882|UniPathway: UPA00126 RPE_RS21345 71aca2dba44f2348abfe05b60cba5db1 470 SUPERFAMILY SSF53448 5 282 1.06E-64 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS21345 71aca2dba44f2348abfe05b60cba5db1 470 Pfam PF00483 Nucleotidyl transferase 7 286 7.1E-53 T 23-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 RPE_RS21345 71aca2dba44f2348abfe05b60cba5db1 470 Gene3D G3DSA:2.60.120.10 358 469 1.7E-44 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS21345 71aca2dba44f2348abfe05b60cba5db1 470 PANTHER PTHR12526:SF387 155 289 1.6E-99 T 23-04-2016 RPE_RS21345 71aca2dba44f2348abfe05b60cba5db1 470 PANTHER PTHR12526:SF387 352 469 1.6E-99 T 23-04-2016 RPE_RS21345 71aca2dba44f2348abfe05b60cba5db1 470 PANTHER PTHR12526 155 289 1.6E-99 T 23-04-2016 RPE_RS21345 71aca2dba44f2348abfe05b60cba5db1 470 PANTHER PTHR12526 352 469 1.6E-99 T 23-04-2016 RPE_RS21345 71aca2dba44f2348abfe05b60cba5db1 470 TIGRFAM TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 5 469 2.6E-184 T 23-04-2016 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GO:0000271|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882|UniPathway: UPA00126 RPE_RS21345 71aca2dba44f2348abfe05b60cba5db1 470 Gene3D G3DSA:3.90.550.10 4 271 3.0E-82 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS07370 7c6365bf31ccd0b75e8dbc5dd5b8772d 218 SUPERFAMILY SSF53335 5 196 4.49E-34 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS07370 7c6365bf31ccd0b75e8dbc5dd5b8772d 218 Gene3D G3DSA:3.40.50.150 4 149 6.0E-32 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS07370 7c6365bf31ccd0b75e8dbc5dd5b8772d 218 Pfam PF08241 Methyltransferase domain 48 144 8.5E-24 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 RPE_RS07370 7c6365bf31ccd0b75e8dbc5dd5b8772d 218 PANTHER PTHR10108 8 145 3.3E-27 T 23-04-2016 RPE_RS15785 c59fac318748663484f1993bdbfa877e 262 PANTHER PTHR30572 32 249 6.4E-48 T 23-04-2016 RPE_RS15785 c59fac318748663484f1993bdbfa877e 262 PANTHER PTHR30572:SF11 32 249 6.4E-48 T 23-04-2016 RPE_RS15785 c59fac318748663484f1993bdbfa877e 262 Pfam PF01618 MotA/TolQ/ExbB proton channel family 111 231 1.6E-33 T 23-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 RPE_RS15785 c59fac318748663484f1993bdbfa877e 262 TIGRFAM TIGR02797 exbB: tonB-system energizer ExbB 40 248 5.6E-93 T 23-04-2016 IPR014164 TonB-system energizer ExbB type-1 GO:0006810|GO:0016020 RPE_RS20380 06fd455f0e4b02fe2dc512963d149e21 245 SUPERFAMILY SSF100950 2 229 1.61E-87 T 23-04-2016 RPE_RS20380 06fd455f0e4b02fe2dc512963d149e21 245 SMART SM00882 5 217 3.1E-90 T 23-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RPE_RS20380 06fd455f0e4b02fe2dc512963d149e21 245 PANTHER PTHR13707 1 232 8.4E-137 T 23-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RPE_RS20380 06fd455f0e4b02fe2dc512963d149e21 245 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 1 218 5.9E-83 T 23-04-2016 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 RPE_RS20380 06fd455f0e4b02fe2dc512963d149e21 245 Gene3D G3DSA:3.40.1080.10 2 216 2.8E-98 T 23-04-2016 RPE_RS20380 06fd455f0e4b02fe2dc512963d149e21 245 Pfam PF01144 Coenzyme A transferase 8 216 1.7E-79 T 23-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RPE_RS07335 e7452e4334b2db0ef6d5eccbef04a028 605 Pfam PF16861 Carbamoyltransferase C-terminus 407 576 7.0E-74 T 23-04-2016 IPR031730 Carbamoyltransferase, C-terminal RPE_RS07335 e7452e4334b2db0ef6d5eccbef04a028 605 Pfam PF02543 Carbamoyltransferase N-terminus 8 351 1.1E-48 T 23-04-2016 IPR003696 Carbamoyltransferase GO:0003824|GO:0009058 RPE_RS07335 e7452e4334b2db0ef6d5eccbef04a028 605 SUPERFAMILY SSF53067 117 156 1.68E-12 T 23-04-2016 RPE_RS07335 e7452e4334b2db0ef6d5eccbef04a028 605 SUPERFAMILY SSF53067 7 84 1.68E-12 T 23-04-2016 RPE_RS07335 e7452e4334b2db0ef6d5eccbef04a028 605 SUPERFAMILY SSF53067 202 356 1.68E-12 T 23-04-2016 RPE_RS07335 e7452e4334b2db0ef6d5eccbef04a028 605 PANTHER PTHR34847 6 591 7.3E-110 T 23-04-2016 RPE_RS00210 260562126fe5791f4350b3e822a9a88f 180 Gene3D G3DSA:3.90.80.10 5 174 6.5E-57 T 23-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 RPE_RS00210 260562126fe5791f4350b3e822a9a88f 180 PANTHER PTHR10286:SF15 1 172 2.7E-65 T 23-04-2016 RPE_RS00210 260562126fe5791f4350b3e822a9a88f 180 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 36.05 T 23-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 RPE_RS00210 260562126fe5791f4350b3e822a9a88f 180 PANTHER PTHR10286 1 172 2.7E-65 T 23-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 RPE_RS00210 260562126fe5791f4350b3e822a9a88f 180 Pfam PF00719 Inorganic pyrophosphatase 18 172 9.8E-51 T 23-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 RPE_RS00210 260562126fe5791f4350b3e822a9a88f 180 SUPERFAMILY SSF50324 4 174 2.22E-63 T 23-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 RPE_RS16230 6f3febae207b5c589f7c28dd8eadd337 300 Pfam PF16344 Domain of unknown function (DUF4974) 199 283 1.6E-7 T 23-04-2016 IPR032508 Protein FecR, C-terminal RPE_RS16230 6f3febae207b5c589f7c28dd8eadd337 300 PIRSF PIRSF018266 1 299 2.5E-54 T 23-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component RPE_RS16230 6f3febae207b5c589f7c28dd8eadd337 300 PANTHER PTHR30273 1 299 1.8E-31 T 23-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component RPE_RS16230 6f3febae207b5c589f7c28dd8eadd337 300 Pfam PF16220 Domain of unknown function (DUF4880) 2 35 5.0E-6 T 23-04-2016 IPR032623 FecR, N-terminal RPE_RS16230 6f3febae207b5c589f7c28dd8eadd337 300 Pfam PF04773 FecR protein 99 187 2.5E-8 T 23-04-2016 IPR006860 FecR protein RPE_RS03340 2a8455a57a60bd8f93fb8fd75b6ae321 332 PANTHER PTHR11695:SF610 22 330 3.6E-136 T 23-04-2016 RPE_RS03340 2a8455a57a60bd8f93fb8fd75b6ae321 332 Pfam PF00107 Zinc-binding dehydrogenase 158 276 1.7E-31 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RPE_RS03340 2a8455a57a60bd8f93fb8fd75b6ae321 332 TIGRFAM TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family 8 330 8.3E-146 T 23-04-2016 IPR014189 Quinone oxidoreductase PIG3 KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.- RPE_RS03340 2a8455a57a60bd8f93fb8fd75b6ae321 332 Gene3D G3DSA:3.90.180.10 6 152 2.6E-44 T 23-04-2016 IPR011032 GroES-like RPE_RS03340 2a8455a57a60bd8f93fb8fd75b6ae321 332 SUPERFAMILY SSF50129 8 146 1.14E-35 T 23-04-2016 IPR011032 GroES-like RPE_RS03340 2a8455a57a60bd8f93fb8fd75b6ae321 332 SMART SM00829 17 330 1.8E-50 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RPE_RS03340 2a8455a57a60bd8f93fb8fd75b6ae321 332 PANTHER PTHR11695 22 330 3.6E-136 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RPE_RS03340 2a8455a57a60bd8f93fb8fd75b6ae321 332 SUPERFAMILY SSF51735 118 295 1.76E-52 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS03340 2a8455a57a60bd8f93fb8fd75b6ae321 332 Gene3D G3DSA:3.40.50.720 153 269 3.0E-33 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS03340 2a8455a57a60bd8f93fb8fd75b6ae321 332 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 34 113 2.6E-8 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RPE_RS18040 c27dac8099144647d1eaa37603d8b4d3 217 SUPERFAMILY SSF48695 74 127 1.82E-6 T 23-04-2016 IPR011031 Multihaem cytochrome RPE_RS18040 c27dac8099144647d1eaa37603d8b4d3 217 Gene3D G3DSA:1.10.3820.10 73 124 1.1E-4 T 23-04-2016 RPE_RS12945 1ebd0b871221d455cd5eb95006ae5397 208 PANTHER PTHR12725 11 196 5.1E-48 T 23-04-2016 RPE_RS12945 1ebd0b871221d455cd5eb95006ae5397 208 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 132 192 1.4E-12 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RPE_RS12945 1ebd0b871221d455cd5eb95006ae5397 208 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 100 187 1.8E-6 T 23-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 RPE_RS12945 1ebd0b871221d455cd5eb95006ae5397 208 Pfam PF13419 Haloacid dehalogenase-like hydrolase 93 188 3.4E-6 T 23-04-2016 IPR023214 HAD-like domain RPE_RS12945 1ebd0b871221d455cd5eb95006ae5397 208 SUPERFAMILY SSF56784 11 201 2.58E-37 T 23-04-2016 IPR023214 HAD-like domain RPE_RS12945 1ebd0b871221d455cd5eb95006ae5397 208 Gene3D G3DSA:3.40.50.1000 88 207 4.4E-27 T 23-04-2016 IPR023214 HAD-like domain RPE_RS12945 1ebd0b871221d455cd5eb95006ae5397 208 Gene3D G3DSA:1.10.150.240 26 87 3.4E-27 T 23-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 RPE_RS12945 1ebd0b871221d455cd5eb95006ae5397 208 PANTHER PTHR12725:SF67 11 196 5.1E-48 T 23-04-2016 RPE_RS22955 82a164299a337e9f2cb3bc49272bcf3d 258 PANTHER PTHR24322:SF264 169 201 3.7E-60 T 23-04-2016 RPE_RS22955 82a164299a337e9f2cb3bc49272bcf3d 258 PANTHER PTHR24322:SF264 22 152 3.7E-60 T 23-04-2016 RPE_RS22955 82a164299a337e9f2cb3bc49272bcf3d 258 Gene3D G3DSA:3.40.50.720 17 257 3.1E-60 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS22955 82a164299a337e9f2cb3bc49272bcf3d 258 SUPERFAMILY SSF51735 18 258 6.04E-63 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS22955 82a164299a337e9f2cb3bc49272bcf3d 258 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 24 257 7.4E-49 T 23-04-2016 RPE_RS22955 82a164299a337e9f2cb3bc49272bcf3d 258 PANTHER PTHR24322 169 201 3.7E-60 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22955 82a164299a337e9f2cb3bc49272bcf3d 258 PANTHER PTHR24322 22 152 3.7E-60 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22955 82a164299a337e9f2cb3bc49272bcf3d 258 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 156 184 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RPE_RS22955 82a164299a337e9f2cb3bc49272bcf3d 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 2.3E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22955 82a164299a337e9f2cb3bc49272bcf3d 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 188 2.3E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22955 82a164299a337e9f2cb3bc49272bcf3d 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 90 101 2.3E-8 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22955 82a164299a337e9f2cb3bc49272bcf3d 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 90 101 2.5E-35 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22955 82a164299a337e9f2cb3bc49272bcf3d 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 19 36 2.5E-35 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22955 82a164299a337e9f2cb3bc49272bcf3d 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 188 2.5E-35 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22955 82a164299a337e9f2cb3bc49272bcf3d 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 190 207 2.5E-35 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22955 82a164299a337e9f2cb3bc49272bcf3d 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 142 158 2.5E-35 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS22955 82a164299a337e9f2cb3bc49272bcf3d 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 220 240 2.5E-35 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS08505 7f318762a28d9299c3948281f333457d 307 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 219 235 - T 23-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RPE_RS08505 7f318762a28d9299c3948281f333457d 307 SUPERFAMILY SSF52283 26 137 3.36E-11 T 23-04-2016 RPE_RS08505 7f318762a28d9299c3948281f333457d 307 PANTHER PTHR10996 32 306 5.2E-121 T 23-04-2016 RPE_RS08505 7f318762a28d9299c3948281f333457d 307 Gene3D G3DSA:3.40.50.720 114 280 8.1E-61 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS08505 7f318762a28d9299c3948281f333457d 307 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 111 280 1.1E-56 T 23-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RPE_RS08505 7f318762a28d9299c3948281f333457d 307 Gene3D G3DSA:3.40.50.720 35 113 3.5E-7 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS08505 7f318762a28d9299c3948281f333457d 307 PANTHER PTHR10996:SF167 32 306 5.2E-121 T 23-04-2016 RPE_RS08505 7f318762a28d9299c3948281f333457d 307 SUPERFAMILY SSF51735 104 281 2.35E-56 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS02495 c9df36aa85702d601867aa35d9c296d4 66 PRINTS PR00064 Ribosomal protein L35 signature 36 54 4.1E-13 T 23-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RPE_RS02495 c9df36aa85702d601867aa35d9c296d4 66 PRINTS PR00064 Ribosomal protein L35 signature 3 20 4.1E-13 T 23-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RPE_RS02495 c9df36aa85702d601867aa35d9c296d4 66 PRINTS PR00064 Ribosomal protein L35 signature 21 35 4.1E-13 T 23-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RPE_RS02495 c9df36aa85702d601867aa35d9c296d4 66 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 23-04-2016 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS02495 c9df36aa85702d601867aa35d9c296d4 66 Pfam PF01632 Ribosomal protein L35 2 60 7.8E-22 T 23-04-2016 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS02495 c9df36aa85702d601867aa35d9c296d4 66 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 17.282 T 23-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RPE_RS02495 c9df36aa85702d601867aa35d9c296d4 66 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 64 7.8E-24 T 23-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RPE_RS02495 c9df36aa85702d601867aa35d9c296d4 66 PANTHER PTHR33343 1 66 1.3E-23 T 23-04-2016 RPE_RS02495 c9df36aa85702d601867aa35d9c296d4 66 SUPERFAMILY SSF143034 2 61 2.35E-20 T 23-04-2016 RPE_RS19210 b1ff2ef9fd5363925327c36fb9b7742a 174 SUPERFAMILY SSF55729 12 174 4.77E-21 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS19210 b1ff2ef9fd5363925327c36fb9b7742a 174 Pfam PF13527 Acetyltransferase (GNAT) domain 43 131 4.1E-8 T 23-04-2016 RPE_RS19210 b1ff2ef9fd5363925327c36fb9b7742a 174 Gene3D G3DSA:3.40.630.30 46 160 4.4E-18 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS16145 a747fab47d49effd3237f890346fe221 378 PANTHER PTHR10909 1 375 6.0E-125 T 23-04-2016 RPE_RS16145 a747fab47d49effd3237f890346fe221 378 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 118 3.8E-21 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS16145 a747fab47d49effd3237f890346fe221 378 SUPERFAMILY SSF56645 1 224 1.23E-65 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RPE_RS16145 a747fab47d49effd3237f890346fe221 378 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 124 136 - T 23-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RPE_RS16145 a747fab47d49effd3237f890346fe221 378 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 229 375 2.2E-42 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS16145 a747fab47d49effd3237f890346fe221 378 SUPERFAMILY SSF47203 225 375 9.34E-50 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS16145 a747fab47d49effd3237f890346fe221 378 Gene3D G3DSA:1.10.540.10 1 120 4.7E-30 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS16145 a747fab47d49effd3237f890346fe221 378 Gene3D G3DSA:1.20.140.10 215 377 3.9E-56 T 23-04-2016 RPE_RS16145 a747fab47d49effd3237f890346fe221 378 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 214 1.6E-23 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RPE_RS16145 a747fab47d49effd3237f890346fe221 378 Gene3D G3DSA:2.40.110.10 121 214 1.9E-32 T 23-04-2016 RPE_RS14810 6c3bda8c51213bb5cff485977b6e2f2a 183 SUPERFAMILY SSF52833 30 181 3.98E-45 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS14810 6c3bda8c51213bb5cff485977b6e2f2a 183 PANTHER PTHR12151 31 183 7.7E-46 T 23-04-2016 IPR003782 Copper chaperone SCO1/SenC RPE_RS14810 6c3bda8c51213bb5cff485977b6e2f2a 183 Gene3D G3DSA:3.40.30.10 2 183 1.2E-52 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS14810 6c3bda8c51213bb5cff485977b6e2f2a 183 Pfam PF02630 SCO1/SenC 31 161 3.8E-34 T 23-04-2016 IPR003782 Copper chaperone SCO1/SenC RPE_RS16150 5969f1505084c78bfc6538335026a3de 131 PANTHER PTHR23408:SF8 1 111 2.0E-40 T 23-04-2016 RPE_RS16150 5969f1505084c78bfc6538335026a3de 131 TIGRFAM TIGR00640 acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain 4 130 1.2E-39 T 23-04-2016 IPR006159 Methylmalonyl-CoA mutase, C-terminal GO:0016853 RPE_RS16150 5969f1505084c78bfc6538335026a3de 131 Pfam PF02310 B12 binding domain 6 116 4.7E-21 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RPE_RS16150 5969f1505084c78bfc6538335026a3de 131 SUPERFAMILY SSF52242 3 129 3.79E-41 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RPE_RS16150 5969f1505084c78bfc6538335026a3de 131 Gene3D G3DSA:3.40.50.280 3 130 8.9E-45 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RPE_RS16150 5969f1505084c78bfc6538335026a3de 131 PANTHER PTHR23408 1 111 2.0E-40 T 23-04-2016 RPE_RS17695 d3530e0962871bfd288da22cffb15aa0 269 PANTHER PTHR32251 58 257 1.1E-30 T 23-04-2016 RPE_RS17695 d3530e0962871bfd288da22cffb15aa0 269 Pfam PF06966 Protein of unknown function (DUF1295) 36 248 7.1E-35 T 23-04-2016 IPR010721 Protein of unknown function DUF1295 RPE_RS17695 d3530e0962871bfd288da22cffb15aa0 269 PANTHER PTHR32251:SF17 58 257 1.1E-30 T 23-04-2016 RPE_RS11295 aa3e1fe67bb988992a304f667e1127da 273 SMART SM00342 165 247 4.3E-7 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RPE_RS11295 aa3e1fe67bb988992a304f667e1127da 273 Gene3D G3DSA:1.10.10.60 203 245 6.3E-4 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS11295 aa3e1fe67bb988992a304f667e1127da 273 Gene3D G3DSA:1.10.10.60 148 202 3.4E-8 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS11295 aa3e1fe67bb988992a304f667e1127da 273 SUPERFAMILY SSF46689 148 198 7.85E-6 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS11295 aa3e1fe67bb988992a304f667e1127da 273 Pfam PF12833 Helix-turn-helix domain 172 245 6.5E-13 T 23-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RPE_RS11295 aa3e1fe67bb988992a304f667e1127da 273 PANTHER PTHR11019 28 255 2.2E-13 T 23-04-2016 RPE_RS09070 4b563e2e4b98a298786948f606e4d6b0 540 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 174 2.0E-51 T 23-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RPE_RS09070 4b563e2e4b98a298786948f606e4d6b0 540 SUPERFAMILY SSF52467 158 343 8.73E-32 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RPE_RS09070 4b563e2e4b98a298786948f606e4d6b0 540 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 384 520 9.4E-42 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RPE_RS09070 4b563e2e4b98a298786948f606e4d6b0 540 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 193 315 4.9E-20 T 23-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RPE_RS09070 4b563e2e4b98a298786948f606e4d6b0 540 Gene3D G3DSA:3.40.50.970 367 530 8.6E-58 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS09070 4b563e2e4b98a298786948f606e4d6b0 540 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 411 430 - T 23-04-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 RPE_RS09070 4b563e2e4b98a298786948f606e4d6b0 540 PANTHER PTHR18968:SF116 4 538 1.4E-177 T 23-04-2016 RPE_RS09070 4b563e2e4b98a298786948f606e4d6b0 540 SUPERFAMILY SSF52518 355 530 2.86E-56 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS09070 4b563e2e4b98a298786948f606e4d6b0 540 Gene3D G3DSA:3.40.50.970 3 179 4.8E-51 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS09070 4b563e2e4b98a298786948f606e4d6b0 540 PANTHER PTHR18968 4 538 1.4E-177 T 23-04-2016 RPE_RS09070 4b563e2e4b98a298786948f606e4d6b0 540 Gene3D G3DSA:3.40.50.1220 186 366 5.2E-34 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RPE_RS09070 4b563e2e4b98a298786948f606e4d6b0 540 SUPERFAMILY SSF52518 1 187 1.64E-47 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS11435 96892f14503c4ce1e7f633bd0f36d486 95 PANTHER PTHR34477 1 93 8.2E-53 T 23-04-2016 RPE_RS11435 96892f14503c4ce1e7f633bd0f36d486 95 SUPERFAMILY SSF82771 1 89 7.45E-18 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily RPE_RS11435 96892f14503c4ce1e7f633bd0f36d486 95 PANTHER PTHR34477:SF2 1 93 8.2E-53 T 23-04-2016 RPE_RS11435 96892f14503c4ce1e7f633bd0f36d486 95 Pfam PF01541 GIY-YIG catalytic domain 3 75 6.0E-11 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily RPE_RS04065 6f5c63f251450d2f108d07833d1a6bb6 337 Pfam PF01522 Polysaccharide deacetylase 90 270 2.3E-21 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RPE_RS04065 6f5c63f251450d2f108d07833d1a6bb6 337 Gene3D G3DSA:3.20.20.370 206 284 2.6E-19 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RPE_RS04065 6f5c63f251450d2f108d07833d1a6bb6 337 Gene3D G3DSA:3.20.20.370 91 131 2.6E-19 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RPE_RS04065 6f5c63f251450d2f108d07833d1a6bb6 337 SUPERFAMILY SSF88713 52 131 1.48E-30 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RPE_RS04065 6f5c63f251450d2f108d07833d1a6bb6 337 SUPERFAMILY SSF88713 206 312 1.48E-30 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RPE_RS04065 6f5c63f251450d2f108d07833d1a6bb6 337 PANTHER PTHR34216 49 145 4.3E-39 T 23-04-2016 RPE_RS04065 6f5c63f251450d2f108d07833d1a6bb6 337 PANTHER PTHR34216 201 337 4.3E-39 T 23-04-2016 RPE_RS23610 dbb3b7db7753883002364ac5bf692935 104 Pfam PF10805 Protein of unknown function (DUF2730) 6 61 5.5E-6 T 23-04-2016 IPR020269 Bacteriophage Mu, Gp25 RPE_RS23540 54514aabaf7b323e25af75abd8ba3d6b 133 Pfam PF10990 Protein of unknown function (DUF2809) 33 114 5.7E-23 T 23-04-2016 IPR021257 Protein of unknown function DUF2809 RPE_RS08620 4b88ffe817b599d69e8253c0800663ae 157 PIRSF PIRSF000216 2 157 8.4E-45 T 23-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 RPE_RS08620 4b88ffe817b599d69e8253c0800663ae 157 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 18 155 1.0E-39 T 23-04-2016 RPE_RS08620 4b88ffe817b599d69e8253c0800663ae 157 Gene3D G3DSA:3.40.30.10 76 154 2.2E-6 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS08620 4b88ffe817b599d69e8253c0800663ae 157 PANTHER PTHR10371 3 154 9.4E-44 T 23-04-2016 RPE_RS08620 4b88ffe817b599d69e8253c0800663ae 157 PANTHER PTHR10371:SF7 3 154 9.4E-44 T 23-04-2016 RPE_RS08620 4b88ffe817b599d69e8253c0800663ae 157 SUPERFAMILY SSF52833 6 155 1.45E-40 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS02160 ee0199341ec4c88bfcd56922678cdc94 547 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 6 50 2.8E-18 T 23-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RPE_RS02160 ee0199341ec4c88bfcd56922678cdc94 547 Pfam PF04552 Sigma-54, DNA binding domain 362 521 7.7E-72 T 23-04-2016 IPR007634 RNA polymerase sigma factor 54, DNA-binding RPE_RS02160 ee0199341ec4c88bfcd56922678cdc94 547 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 409 428 - T 23-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RPE_RS02160 ee0199341ec4c88bfcd56922678cdc94 547 Pfam PF04963 Sigma-54 factor, core binding domain 160 347 5.2E-52 T 23-04-2016 IPR007046 RNA polymerase sigma factor 54, core-binding GO:0003677|GO:0006352 RPE_RS02160 ee0199341ec4c88bfcd56922678cdc94 547 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 501 508 - T 23-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RPE_RS02160 ee0199341ec4c88bfcd56922678cdc94 547 PANTHER PTHR32248 2 59 3.8E-152 T 23-04-2016 RPE_RS02160 ee0199341ec4c88bfcd56922678cdc94 547 PANTHER PTHR32248 90 523 3.8E-152 T 23-04-2016 RPE_RS02160 ee0199341ec4c88bfcd56922678cdc94 547 PANTHER PTHR32248:SF4 2 59 3.8E-152 T 23-04-2016 RPE_RS02160 ee0199341ec4c88bfcd56922678cdc94 547 PANTHER PTHR32248:SF4 90 523 3.8E-152 T 23-04-2016 RPE_RS02160 ee0199341ec4c88bfcd56922678cdc94 547 PIRSF PIRSF000774 1 523 1.6E-146 T 23-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RPE_RS02160 ee0199341ec4c88bfcd56922678cdc94 547 PRINTS PR00045 Sigma-54 factor signature 496 514 2.6E-31 T 23-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RPE_RS02160 ee0199341ec4c88bfcd56922678cdc94 547 PRINTS PR00045 Sigma-54 factor signature 421 433 2.6E-31 T 23-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RPE_RS02160 ee0199341ec4c88bfcd56922678cdc94 547 PRINTS PR00045 Sigma-54 factor signature 233 250 2.6E-31 T 23-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RPE_RS02160 ee0199341ec4c88bfcd56922678cdc94 547 PRINTS PR00045 Sigma-54 factor signature 437 448 2.6E-31 T 23-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RPE_RS02160 ee0199341ec4c88bfcd56922678cdc94 547 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 11 520 4.6E-132 T 23-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RPE_RS20555 2cf01e2c3310a0c5e6e2b91a74bad4be 318 Pfam PF12697 Alpha/beta hydrolase family 57 301 1.1E-17 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS20555 2cf01e2c3310a0c5e6e2b91a74bad4be 318 PANTHER PTHR10992 195 309 6.1E-39 T 23-04-2016 RPE_RS20555 2cf01e2c3310a0c5e6e2b91a74bad4be 318 PANTHER PTHR10992 1 166 6.1E-39 T 23-04-2016 RPE_RS20555 2cf01e2c3310a0c5e6e2b91a74bad4be 318 Gene3D G3DSA:3.40.50.1820 27 308 3.1E-47 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS20555 2cf01e2c3310a0c5e6e2b91a74bad4be 318 PRINTS PR00111 Alpha/beta hydrolase fold signature 252 266 3.4E-6 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS20555 2cf01e2c3310a0c5e6e2b91a74bad4be 318 PRINTS PR00111 Alpha/beta hydrolase fold signature 139 152 3.4E-6 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS20555 2cf01e2c3310a0c5e6e2b91a74bad4be 318 PRINTS PR00111 Alpha/beta hydrolase fold signature 80 95 3.4E-6 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS20555 2cf01e2c3310a0c5e6e2b91a74bad4be 318 PRINTS PR00111 Alpha/beta hydrolase fold signature 125 138 3.4E-6 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS20555 2cf01e2c3310a0c5e6e2b91a74bad4be 318 SUPERFAMILY SSF53474 27 308 4.27E-51 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS22160 a9a7bbba156c8074978e0577088dee83 222 Gene3D G3DSA:3.40.50.300 6 78 0.001 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS22160 a9a7bbba156c8074978e0577088dee83 222 SUPERFAMILY SSF52540 4 81 1.51E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12660 bc074fef9661ab58f45664f68e0bd860 111 TIGRFAM TIGR02436 TIGR02436: four helix bundle protein 1 103 1.1E-36 T 23-04-2016 IPR012657 23S rRNA-intervening sequence protein RPE_RS12660 bc074fef9661ab58f45664f68e0bd860 111 PANTHER PTHR38471:SF2 1 109 3.3E-29 T 23-04-2016 RPE_RS12660 bc074fef9661ab58f45664f68e0bd860 111 Pfam PF05635 23S rRNA-intervening sequence protein 1 96 1.1E-34 T 23-04-2016 IPR012657 23S rRNA-intervening sequence protein RPE_RS12660 bc074fef9661ab58f45664f68e0bd860 111 PANTHER PTHR38471 1 109 3.3E-29 T 23-04-2016 RPE_RS12660 bc074fef9661ab58f45664f68e0bd860 111 Gene3D G3DSA:1.20.1440.60 1 103 7.6E-34 T 23-04-2016 IPR012657 23S rRNA-intervening sequence protein RPE_RS12660 bc074fef9661ab58f45664f68e0bd860 111 SUPERFAMILY SSF158446 2 103 2.35E-33 T 23-04-2016 RPE_RS17145 be0ccf2b1eb4afab762c090e0bf4be69 109 SMART SM00530 43 101 6.6E-6 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RPE_RS17145 be0ccf2b1eb4afab762c090e0bf4be69 109 Pfam PF13560 Helix-turn-helix domain 44 94 2.5E-9 T 23-04-2016 RPE_RS17145 be0ccf2b1eb4afab762c090e0bf4be69 109 SUPERFAMILY SSF47413 43 90 9.57E-12 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS17145 be0ccf2b1eb4afab762c090e0bf4be69 109 PANTHER PTHR36511:SF2 9 101 6.8E-29 T 23-04-2016 RPE_RS17145 be0ccf2b1eb4afab762c090e0bf4be69 109 Gene3D G3DSA:1.10.260.40 44 99 1.6E-19 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS17145 be0ccf2b1eb4afab762c090e0bf4be69 109 PANTHER PTHR36511 9 101 6.8E-29 T 23-04-2016 RPE_RS16875 40ba7016dbb5097139b7e2bbb3e68682 163 Gene3D G3DSA:3.30.420.140 19 154 5.6E-48 T 23-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 RPE_RS16875 40ba7016dbb5097139b7e2bbb3e68682 163 SUPERFAMILY SSF53098 19 152 5.01E-39 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RPE_RS16875 40ba7016dbb5097139b7e2bbb3e68682 163 SMART SM00732 19 119 1.4E-30 T 23-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 RPE_RS16875 40ba7016dbb5097139b7e2bbb3e68682 163 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 19 154 23.422 T 23-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 RPE_RS16875 40ba7016dbb5097139b7e2bbb3e68682 163 Pfam PF03652 Holliday junction resolvase 21 151 3.3E-40 T 23-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 RPE_RS16875 40ba7016dbb5097139b7e2bbb3e68682 163 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 22 151 2.4E-34 T 23-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 RPE_RS16875 40ba7016dbb5097139b7e2bbb3e68682 163 PANTHER PTHR33317 14 161 1.3E-41 T 23-04-2016 RPE_RS16875 40ba7016dbb5097139b7e2bbb3e68682 163 PANTHER PTHR33317:SF1 14 161 1.3E-41 T 23-04-2016 RPE_RS03295 3e12fc0edb76aa6bbae983d31a372044 268 PANTHER PTHR32251 23 264 3.1E-51 T 23-04-2016 RPE_RS03295 3e12fc0edb76aa6bbae983d31a372044 268 Pfam PF06966 Protein of unknown function (DUF1295) 23 256 3.8E-72 T 23-04-2016 IPR010721 Protein of unknown function DUF1295 RPE_RS08295 35293d3f2fc60203058a1ca1291cf123 95 Pfam PF01541 GIY-YIG catalytic domain 3 73 5.3E-12 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily RPE_RS08295 35293d3f2fc60203058a1ca1291cf123 95 PANTHER PTHR34477 2 93 1.7E-47 T 23-04-2016 RPE_RS08295 35293d3f2fc60203058a1ca1291cf123 95 PANTHER PTHR34477:SF2 2 93 1.7E-47 T 23-04-2016 RPE_RS08295 35293d3f2fc60203058a1ca1291cf123 95 SUPERFAMILY SSF82771 3 88 1.57E-20 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily RPE_RS09950 9002335612a0bec9dee981831ed7408c 612 PANTHER PTHR33362 8 218 1.3E-199 T 23-04-2016 RPE_RS09950 9002335612a0bec9dee981831ed7408c 612 PANTHER PTHR33362 353 603 1.3E-199 T 23-04-2016 RPE_RS09950 9002335612a0bec9dee981831ed7408c 612 PANTHER PTHR33362:SF7 8 218 1.3E-199 T 23-04-2016 RPE_RS09950 9002335612a0bec9dee981831ed7408c 612 PANTHER PTHR33362:SF7 353 603 1.3E-199 T 23-04-2016 RPE_RS09950 9002335612a0bec9dee981831ed7408c 612 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 14 343 8.9E-59 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RPE_RS00820 233990b857647b5c367553437b2f8c8b 254 Pfam PF08241 Methyltransferase domain 83 129 1.0E-7 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 RPE_RS00820 233990b857647b5c367553437b2f8c8b 254 SUPERFAMILY SSF53335 31 210 5.0E-21 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS00820 233990b857647b5c367553437b2f8c8b 254 PANTHER PTHR10108 89 226 1.6E-22 T 23-04-2016 RPE_RS00820 233990b857647b5c367553437b2f8c8b 254 Gene3D G3DSA:3.40.50.150 89 187 1.5E-16 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS00820 233990b857647b5c367553437b2f8c8b 254 PANTHER PTHR10108:SF820 89 226 1.6E-22 T 23-04-2016 RPE_RS17225 b8f42db0b68c1885206aac93e195bcb1 234 PANTHER PTHR10993:SF10 22 231 5.2E-82 T 23-04-2016 RPE_RS17225 b8f42db0b68c1885206aac93e195bcb1 234 PIRSF PIRSF016262 20 234 2.2E-54 T 23-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RPE_RS17225 b8f42db0b68c1885206aac93e195bcb1 234 Hamap MF_00013 Octanoyltransferase [lipB]. 20 233 35.368 T 23-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RPE_RS17225 b8f42db0b68c1885206aac93e195bcb1 234 SUPERFAMILY SSF55681 27 232 1.82E-66 T 23-04-2016 RPE_RS17225 b8f42db0b68c1885206aac93e195bcb1 234 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 88 103 - T 23-04-2016 IPR020605 Octanoyltransferase, conserved site GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RPE_RS17225 b8f42db0b68c1885206aac93e195bcb1 234 Gene3D G3DSA:3.90.1550.10 21 231 7.4E-71 T 23-04-2016 RPE_RS17225 b8f42db0b68c1885206aac93e195bcb1 234 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 55 230 2.5E-46 T 23-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RPE_RS17225 b8f42db0b68c1885206aac93e195bcb1 234 Pfam PF03099 Biotin/lipoate A/B protein ligase family 88 184 2.4E-7 T 23-04-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 RPE_RS17225 b8f42db0b68c1885206aac93e195bcb1 234 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 92 145 7.0E-25 T 23-04-2016 RPE_RS17225 b8f42db0b68c1885206aac93e195bcb1 234 PANTHER PTHR10993 22 231 5.2E-82 T 23-04-2016 RPE_RS01835 f1c47d0690be73c7deb70c90478faa01 255 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 252 47.389 T 23-04-2016 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 UniPathway: UPA00031 RPE_RS01835 f1c47d0690be73c7deb70c90478faa01 255 Pfam PF00977 Histidine biosynthesis protein 5 236 3.4E-89 T 23-04-2016 IPR006062 Histidine biosynthesis GO:0000105 RPE_RS01835 f1c47d0690be73c7deb70c90478faa01 255 Gene3D G3DSA:3.20.20.70 5 253 1.7E-106 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS01835 f1c47d0690be73c7deb70c90478faa01 255 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 2 252 3.2E-107 T 23-04-2016 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 UniPathway: UPA00031 RPE_RS01835 f1c47d0690be73c7deb70c90478faa01 255 PANTHER PTHR21235:SF2 1 255 4.0E-127 T 23-04-2016 RPE_RS01835 f1c47d0690be73c7deb70c90478faa01 255 SUPERFAMILY SSF51366 1 252 1.26E-83 T 23-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 RPE_RS01835 f1c47d0690be73c7deb70c90478faa01 255 PANTHER PTHR21235 1 255 4.0E-127 T 23-04-2016 RPE_RS05015 04efe4d1ecb63c2eff330405e5f34130 160 TIGRFAM TIGR02286 PaaD: phenylacetic acid degradation protein PaaD 31 142 1.7E-45 T 23-04-2016 IPR011973 Phenylacetic acid degradation protein PaaD GO:0016790 KEGG: 00360+3.1.2.-|KEGG: 00362+3.1.2.-|KEGG: 00592+3.1.2.-|KEGG: 00903+3.1.2.- RPE_RS05015 04efe4d1ecb63c2eff330405e5f34130 160 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 32 139 3.1E-22 T 23-04-2016 IPR003736 Phenylacetic acid degradation-related domain RPE_RS05015 04efe4d1ecb63c2eff330405e5f34130 160 Gene3D G3DSA:3.10.129.10 13 146 5.8E-43 T 23-04-2016 IPR029069 HotDog domain RPE_RS05015 04efe4d1ecb63c2eff330405e5f34130 160 PANTHER PTHR12418 33 156 2.8E-34 T 23-04-2016 RPE_RS05015 04efe4d1ecb63c2eff330405e5f34130 160 PANTHER PTHR12418:SF24 33 156 2.8E-34 T 23-04-2016 RPE_RS05015 04efe4d1ecb63c2eff330405e5f34130 160 SUPERFAMILY SSF54637 11 138 1.71E-30 T 23-04-2016 IPR029069 HotDog domain RPE_RS05015 04efe4d1ecb63c2eff330405e5f34130 160 Pfam PF03061 Thioesterase superfamily 59 133 2.5E-11 T 23-04-2016 IPR006683 Thioesterase domain RPE_RS18395 68ece331882608e0e8477965443b9117 192 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 55 1.3E-15 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS18395 68ece331882608e0e8477965443b9117 192 PANTHER PTHR30055 5 190 1.3E-19 T 23-04-2016 RPE_RS18395 68ece331882608e0e8477965443b9117 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 3.9E-9 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS18395 68ece331882608e0e8477965443b9117 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 3.9E-9 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS18395 68ece331882608e0e8477965443b9117 192 Gene3D G3DSA:1.10.357.10 6 190 1.7E-32 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RPE_RS18395 68ece331882608e0e8477965443b9117 192 SUPERFAMILY SSF46689 7 72 5.64E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS18395 68ece331882608e0e8477965443b9117 192 SUPERFAMILY SSF48498 88 183 6.47E-7 T 23-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RPE_RS19720 c1974e7de9aa3b00ccfcc5cd68ffdc7b 400 Gene3D G3DSA:3.30.70.270 224 384 5.1E-50 T 23-04-2016 RPE_RS19720 c1974e7de9aa3b00ccfcc5cd68ffdc7b 400 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 220 380 9.5E-44 T 23-04-2016 IPR000160 GGDEF domain RPE_RS19720 c1974e7de9aa3b00ccfcc5cd68ffdc7b 400 SUPERFAMILY SSF55073 227 383 1.65E-44 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS19720 c1974e7de9aa3b00ccfcc5cd68ffdc7b 400 SMART SM00267 211 381 9.9E-53 T 23-04-2016 IPR000160 GGDEF domain RPE_RS19720 c1974e7de9aa3b00ccfcc5cd68ffdc7b 400 Pfam PF00990 Diguanylate cyclase, GGDEF domain 222 377 4.1E-41 T 23-04-2016 IPR000160 GGDEF domain RPE_RS19720 c1974e7de9aa3b00ccfcc5cd68ffdc7b 400 PANTHER PTHR10799 248 379 4.8E-24 T 23-04-2016 RPE_RS08145 99b56939b6589cec05056467cb40769c 322 PANTHER PTHR30468 23 319 8.6E-81 T 23-04-2016 RPE_RS08145 99b56939b6589cec05056467cb40769c 322 SUPERFAMILY SSF53335 22 210 1.72E-8 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS08145 99b56939b6589cec05056467cb40769c 322 PIRSF PIRSF018005 1 322 2.0E-129 T 23-04-2016 IPR017804 Methyltransferase EgtD-like RPE_RS08145 99b56939b6589cec05056467cb40769c 322 Pfam PF10017 Histidine-specific methyltransferase, SAM-dependent 194 317 6.7E-43 T 23-04-2016 IPR019257 Histidine-specific methyltransferase, SAM-dependent RPE_RS08145 99b56939b6589cec05056467cb40769c 322 PANTHER PTHR30468:SF6 23 319 8.6E-81 T 23-04-2016 RPE_RS08145 99b56939b6589cec05056467cb40769c 322 TIGRFAM TIGR03438 egtD_ergothio: dimethylhistidine N-methyltransferase 21 318 8.0E-126 T 23-04-2016 IPR017804 Methyltransferase EgtD-like RPE_RS00170 1f45c26cb59a5f4e49176ad733dd99cf 259 SUPERFAMILY SSF48317 9 221 1.85E-22 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RPE_RS00170 1f45c26cb59a5f4e49176ad733dd99cf 259 Pfam PF01569 PAP2 superfamily 94 219 3.5E-19 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RPE_RS00170 1f45c26cb59a5f4e49176ad733dd99cf 259 SMART SM00014 92 213 0.0091 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RPE_RS00170 1f45c26cb59a5f4e49176ad733dd99cf 259 Gene3D G3DSA:1.20.144.10 51 222 1.3E-14 T 23-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RPE_RS23190 2385a9254cbb9592d2adbb0f71fe8295 1179 SUPERFAMILY SSF52540 338 514 9.3E-6 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS23190 2385a9254cbb9592d2adbb0f71fe8295 1179 SUPERFAMILY SSF52540 173 247 9.3E-6 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS12865 b3170bf4dc29f8fbcb212aa03fe48c45 284 PANTHER PTHR39962:SF1 7 284 1.9E-75 T 23-04-2016 RPE_RS12865 b3170bf4dc29f8fbcb212aa03fe48c45 284 PANTHER PTHR39962 7 284 1.9E-75 T 23-04-2016 RPE_RS12865 b3170bf4dc29f8fbcb212aa03fe48c45 284 Pfam PF06230 Protein of unknown function (DUF1009) 63 279 6.0E-64 T 23-04-2016 IPR010415 Protein of unknown function DUF1009 RPE_RS02120 2c3ead29437a5b1f8f747a21f00d2379 432 PANTHER PTHR23321:SF19 33 317 4.0E-42 T 23-04-2016 RPE_RS02120 2c3ead29437a5b1f8f747a21f00d2379 432 SUPERFAMILY SSF51649 146 426 1.44E-88 T 23-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RPE_RS02120 2c3ead29437a5b1f8f747a21f00d2379 432 Gene3D G3DSA:3.20.20.110 146 431 3.7E-73 T 23-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RPE_RS02120 2c3ead29437a5b1f8f747a21f00d2379 432 PANTHER PTHR23321 33 317 4.0E-42 T 23-04-2016 RPE_RS02120 2c3ead29437a5b1f8f747a21f00d2379 432 Gene3D G3DSA:3.30.70.150 3 145 1.1E-40 T 23-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RPE_RS02120 2c3ead29437a5b1f8f747a21f00d2379 432 Pfam PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain 33 141 6.1E-6 T 23-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RPE_RS02120 2c3ead29437a5b1f8f747a21f00d2379 432 Pfam PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain 151 429 6.8E-59 T 23-04-2016 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RPE_RS02120 2c3ead29437a5b1f8f747a21f00d2379 432 SUPERFAMILY SSF54966 5 145 4.84E-42 T 23-04-2016 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RPE_RS04390 e64e49fe02d2f084962d98f46682e1a1 387 PANTHER PTHR11476:SF5 27 180 2.5E-65 T 23-04-2016 RPE_RS04390 e64e49fe02d2f084962d98f46682e1a1 387 PANTHER PTHR11476:SF5 237 376 2.5E-65 T 23-04-2016 RPE_RS04390 e64e49fe02d2f084962d98f46682e1a1 387 Gene3D G3DSA:3.30.930.10 234 235 3.4E-51 T 23-04-2016 RPE_RS04390 e64e49fe02d2f084962d98f46682e1a1 387 Gene3D G3DSA:3.30.930.10 291 376 3.4E-51 T 23-04-2016 RPE_RS04390 e64e49fe02d2f084962d98f46682e1a1 387 Gene3D G3DSA:3.30.930.10 19 173 3.4E-51 T 23-04-2016 RPE_RS04390 e64e49fe02d2f084962d98f46682e1a1 387 SUPERFAMILY SSF55681 258 375 8.82E-52 T 23-04-2016 RPE_RS04390 e64e49fe02d2f084962d98f46682e1a1 387 SUPERFAMILY SSF55681 17 175 8.82E-52 T 23-04-2016 RPE_RS04390 e64e49fe02d2f084962d98f46682e1a1 387 PANTHER PTHR11476 27 180 2.5E-65 T 23-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 RPE_RS04390 e64e49fe02d2f084962d98f46682e1a1 387 PANTHER PTHR11476 237 376 2.5E-65 T 23-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 RPE_RS04390 e64e49fe02d2f084962d98f46682e1a1 387 Pfam PF13393 Histidyl-tRNA synthetase 12 213 1.8E-27 T 23-04-2016 RPE_RS04390 e64e49fe02d2f084962d98f46682e1a1 387 Pfam PF13393 Histidyl-tRNA synthetase 253 374 1.2E-13 T 23-04-2016 RPE_RS23560 6d77058764356e49a8ba31bbced6a4bc 123 Pfam PF12680 SnoaL-like domain 10 103 8.9E-10 T 23-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain RPE_RS23560 6d77058764356e49a8ba31bbced6a4bc 123 SUPERFAMILY SSF54427 5 109 4.81E-15 T 23-04-2016 IPR032710 NTF2-like domain RPE_RS23560 6d77058764356e49a8ba31bbced6a4bc 123 Gene3D G3DSA:3.10.450.50 7 110 1.9E-12 T 23-04-2016 IPR032710 NTF2-like domain RPE_RS21090 e2b137e898e2caaa7d6abb3133cf0d7b 410 PANTHER PTHR30483 5 367 1.8E-50 T 23-04-2016 RPE_RS21090 e2b137e898e2caaa7d6abb3133cf0d7b 410 SUPERFAMILY SSF53822 23 368 1.35E-69 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RPE_RS21090 e2b137e898e2caaa7d6abb3133cf0d7b 410 Gene3D G3DSA:3.40.50.2300 23 233 1.5E-46 T 23-04-2016 RPE_RS21090 e2b137e898e2caaa7d6abb3133cf0d7b 410 Pfam PF13458 Periplasmic binding protein 24 368 3.3E-74 T 23-04-2016 IPR028081 Leucine-binding protein domain RPE_RS14115 23f9ed8fcb9541b685ea10ab4ca1c20c 160 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 153 87.508 T 23-04-2016 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 RPE_RS14115 23f9ed8fcb9541b685ea10ab4ca1c20c 160 PANTHER PTHR30455 2 156 1.4E-65 T 23-04-2016 RPE_RS14115 23f9ed8fcb9541b685ea10ab4ca1c20c 160 PANTHER PTHR30455:SF2 2 156 1.4E-65 T 23-04-2016 RPE_RS14115 23f9ed8fcb9541b685ea10ab4ca1c20c 160 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 145 1.7E-52 T 23-04-2016 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 RPE_RS14115 23f9ed8fcb9541b685ea10ab4ca1c20c 160 Pfam PF03477 ATP cone domain 50 136 2.4E-22 T 23-04-2016 IPR005144 ATP-cone domain RPE_RS21210 e012c79c9da8724605eac8c9968862c4 260 PANTHER PTHR40048 1 260 6.2E-45 T 23-04-2016 RPE_RS21210 e012c79c9da8724605eac8c9968862c4 260 SUPERFAMILY SSF53335 21 259 1.41E-40 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS21210 e012c79c9da8724605eac8c9968862c4 260 Gene3D G3DSA:3.40.50.150 25 223 1.3E-8 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS21210 e012c79c9da8724605eac8c9968862c4 260 Pfam PF04989 Cephalosporin hydroxylase 39 260 3.3E-79 T 23-04-2016 IPR007072 Rhamnosyl O-methyltransferase/Cephalosporin hydroxylase GO:0008168|GO:0008610 KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- RPE_RS04770 6a3359056deff5d1f408375bdf1b861a 153 Gene3D G3DSA:3.40.1280.10 2 150 1.4E-49 T 23-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RPE_RS04770 6a3359056deff5d1f408375bdf1b861a 153 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 1 150 29.789 T 23-04-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 RPE_RS04770 6a3359056deff5d1f408375bdf1b861a 153 PANTHER PTHR12029:SF31 1 146 2.8E-54 T 23-04-2016 RPE_RS04770 6a3359056deff5d1f408375bdf1b861a 153 Pfam PF00588 SpoU rRNA Methylase family 2 139 2.5E-32 T 23-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RPE_RS04770 6a3359056deff5d1f408375bdf1b861a 153 SUPERFAMILY SSF75217 2 147 1.24E-39 T 23-04-2016 IPR029028 Alpha/beta knot methyltransferases RPE_RS04770 6a3359056deff5d1f408375bdf1b861a 153 PIRSF PIRSF029256 1 153 2.8E-53 T 23-04-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 RPE_RS04770 6a3359056deff5d1f408375bdf1b861a 153 PANTHER PTHR12029 1 146 2.8E-54 T 23-04-2016 RPE_RS00060 91cd13bc00e86fab1ef5e39a489457fa 166 Pfam PF05751 FixH 11 162 4.8E-30 T 23-04-2016 IPR008620 Nitrogen fixation protein FixH RPE_RS00060 91cd13bc00e86fab1ef5e39a489457fa 166 PIRSF PIRSF011386 1 166 3.0E-49 T 23-04-2016 IPR018037 Nitrogen fixation protein FixH, Proteobacterial RPE_RS14340 3b1efe8265a035b4b176a947f52a82e7 194 Gene3D G3DSA:3.40.50.720 8 146 4.9E-44 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS14340 3b1efe8265a035b4b176a947f52a82e7 194 Pfam PF13380 CoA binding domain 19 137 1.0E-33 T 23-04-2016 IPR003781 CoA-binding GO:0048037 RPE_RS14340 3b1efe8265a035b4b176a947f52a82e7 194 PANTHER PTHR33303 1 182 1.5E-45 T 23-04-2016 RPE_RS14340 3b1efe8265a035b4b176a947f52a82e7 194 SUPERFAMILY SSF51735 8 140 1.63E-37 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS14340 3b1efe8265a035b4b176a947f52a82e7 194 SMART SM00881 14 111 4.2E-15 T 23-04-2016 IPR003781 CoA-binding GO:0048037 RPE_RS11010 719a2c3afe100bc414f6299e41d57bd2 280 SUPERFAMILY SSF53335 76 193 1.96E-26 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS11010 719a2c3afe100bc414f6299e41d57bd2 280 PANTHER PTHR11579 22 46 1.2E-34 T 23-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 RPE_RS11010 719a2c3afe100bc414f6299e41d57bd2 280 PANTHER PTHR11579 64 225 1.2E-34 T 23-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 RPE_RS11010 719a2c3afe100bc414f6299e41d57bd2 280 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 64 194 2.7E-22 T 23-04-2016 RPE_RS11010 719a2c3afe100bc414f6299e41d57bd2 280 Gene3D G3DSA:3.40.50.150 21 198 9.3E-36 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS10075 69bc24c6f3f1d833adbcd26bceee1b7e 232 Hamap MF_00664 Phosphatidylserine decarboxylase proenzyme [psd]. 13 221 39.063 T 23-04-2016 IPR033175 Phosphatidylserine decarboxylase, archaeal-type KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 RPE_RS10075 69bc24c6f3f1d833adbcd26bceee1b7e 232 Pfam PF02666 Phosphatidylserine decarboxylase 48 217 5.5E-31 T 23-04-2016 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 RPE_RS10075 69bc24c6f3f1d833adbcd26bceee1b7e 232 TIGRFAM TIGR00164 PS_decarb_rel: phosphatidylserine decarboxylase homolog 17 222 1.2E-59 T 23-04-2016 IPR033175 Phosphatidylserine decarboxylase, archaeal-type KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 RPE_RS10075 69bc24c6f3f1d833adbcd26bceee1b7e 232 PANTHER PTHR35809 2 224 1.1E-76 T 23-04-2016 RPE_RS13610 14529283dcce84f1503ac2e4c18db8e7 59 PRINTS PR00673 Light harvesting protein A chain signature 5 12 4.5E-12 T 23-04-2016 IPR018332 Antenna complex, alpha subunit RPE_RS13610 14529283dcce84f1503ac2e4c18db8e7 59 PRINTS PR00673 Light harvesting protein A chain signature 31 42 4.5E-12 T 23-04-2016 IPR018332 Antenna complex, alpha subunit RPE_RS13610 14529283dcce84f1503ac2e4c18db8e7 59 PRINTS PR00673 Light harvesting protein A chain signature 12 31 4.5E-12 T 23-04-2016 IPR018332 Antenna complex, alpha subunit RPE_RS13610 14529283dcce84f1503ac2e4c18db8e7 59 SUPERFAMILY SSF56918 1 50 1.54E-21 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS13610 14529283dcce84f1503ac2e4c18db8e7 59 Gene3D G3DSA:4.10.220.20 1 52 1.1E-30 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS13610 14529283dcce84f1503ac2e4c18db8e7 59 Pfam PF00556 Antenna complex alpha/beta subunit 6 41 1.1E-14 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS13610 14529283dcce84f1503ac2e4c18db8e7 59 ProSitePatterns PS00968 Antenna complexes alpha subunits signature. 25 41 - T 23-04-2016 IPR002361 Antenna complex, alpha subunit conserved site GO:0016021|GO:0019684|GO:0019866|GO:0030077|GO:0045156 RPE_RS03995 1ac7776e6d6d9214ab22b7fce0ca1106 218 Pfam PF12973 ChrR Cupin-like domain 116 195 8.5E-9 T 23-04-2016 IPR025979 ChrR-like cupin domain RPE_RS03995 1ac7776e6d6d9214ab22b7fce0ca1106 218 TIGRFAM TIGR02451 anti_sig_ChrR: anti-sigma factor, putative, ChrR family 6 218 5.4E-73 T 23-04-2016 IPR012807 Anti-sigma factor ChrR, putative RPE_RS03995 1ac7776e6d6d9214ab22b7fce0ca1106 218 SUPERFAMILY SSF51182 103 211 9.68E-15 T 23-04-2016 IPR011051 RmlC-like cupin domain RPE_RS03995 1ac7776e6d6d9214ab22b7fce0ca1106 218 Gene3D G3DSA:2.60.120.10 133 204 1.3E-11 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS17570 917852643bfdbf27479bb8bc779caa94 317 PANTHER PTHR10366 2 304 3.3E-66 T 23-04-2016 RPE_RS17570 917852643bfdbf27479bb8bc779caa94 317 Gene3D G3DSA:3.40.50.720 1 180 1.4E-46 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS17570 917852643bfdbf27479bb8bc779caa94 317 Gene3D G3DSA:3.90.25.10 181 303 1.3E-23 T 23-04-2016 RPE_RS17570 917852643bfdbf27479bb8bc779caa94 317 SUPERFAMILY SSF51735 1 303 1.04E-69 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS17570 917852643bfdbf27479bb8bc779caa94 317 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 222 2.6E-50 T 23-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 RPE_RS12590 151f0c175637c9cd797e1521b0d33011 211 PRINTS PR00127 Clp protease catalytic subunit P signature 27 42 3.4E-47 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RPE_RS12590 151f0c175637c9cd797e1521b0d33011 211 PRINTS PR00127 Clp protease catalytic subunit P signature 98 115 3.4E-47 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RPE_RS12590 151f0c175637c9cd797e1521b0d33011 211 PRINTS PR00127 Clp protease catalytic subunit P signature 67 87 3.4E-47 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RPE_RS12590 151f0c175637c9cd797e1521b0d33011 211 PRINTS PR00127 Clp protease catalytic subunit P signature 119 138 3.4E-47 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RPE_RS12590 151f0c175637c9cd797e1521b0d33011 211 PRINTS PR00127 Clp protease catalytic subunit P signature 176 195 3.4E-47 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RPE_RS12590 151f0c175637c9cd797e1521b0d33011 211 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 120 133 - T 23-04-2016 IPR033135 ClpP, histidine active site RPE_RS12590 151f0c175637c9cd797e1521b0d33011 211 PANTHER PTHR10381:SF11 1 207 1.8E-137 T 23-04-2016 RPE_RS12590 151f0c175637c9cd797e1521b0d33011 211 Gene3D G3DSA:3.90.226.10 11 200 6.8E-82 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS12590 151f0c175637c9cd797e1521b0d33011 211 PANTHER PTHR10381 1 207 1.8E-137 T 23-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA RPE_RS12590 151f0c175637c9cd797e1521b0d33011 211 Pfam PF00574 Clp protease 21 200 3.3E-82 T 23-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA RPE_RS12590 151f0c175637c9cd797e1521b0d33011 211 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 11 201 41.289 T 23-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RPE_RS12590 151f0c175637c9cd797e1521b0d33011 211 SUPERFAMILY SSF52096 18 201 1.54E-69 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS22545 c65c738e16fde785b90ec7ba2a8e3c2f 181 Pfam PF02627 Carboxymuconolactone decarboxylase family 95 169 1.3E-14 T 23-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RPE_RS22545 c65c738e16fde785b90ec7ba2a8e3c2f 181 TIGRFAM TIGR00777 ahpD: alkylhydroperoxidase, AhpD family 3 174 2.4E-68 T 23-04-2016 IPR004674 Alkylhydroperoxidase AhpD GO:0006979|GO:0032843|GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RPE_RS22545 c65c738e16fde785b90ec7ba2a8e3c2f 181 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 112 160 2.7E-18 T 23-04-2016 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RPE_RS22545 c65c738e16fde785b90ec7ba2a8e3c2f 181 Hamap MF_01676 Alkyl hydroperoxide reductase AhpD [ahpD]. 1 181 90.67 T 23-04-2016 IPR004674 Alkylhydroperoxidase AhpD GO:0006979|GO:0032843|GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RPE_RS22545 c65c738e16fde785b90ec7ba2a8e3c2f 181 SUPERFAMILY SSF69118 3 171 7.42E-47 T 23-04-2016 IPR029032 AhpD-like RPE_RS22545 c65c738e16fde785b90ec7ba2a8e3c2f 181 Gene3D G3DSA:1.20.1290.10 1 168 1.3E-55 T 23-04-2016 IPR029032 AhpD-like RPE_RS06780 deab27eca566d7525bc239857e01ebf1 175 TIGRFAM TIGR02020 BchF: 2-vinyl bacteriochlorophyllide hydratase 16 157 2.2E-60 T 23-04-2016 IPR009905 2-vinyl bacteriochlorophyllide hydratase GO:0016836|GO:0019685|GO:0030494 KEGG: 00253+4.2.1.-|KEGG: 00300+4.2.1.-|KEGG: 00350+4.2.1.-|KEGG: 00362+4.2.1.-|KEGG: 00363+4.2.1.-|KEGG: 00400+4.2.1.-|KEGG: 00623+4.2.1.-|KEGG: 00626+4.2.1.-|KEGG: 00650+4.2.1.-|KEGG: 00860+4.2.1.-|KEGG: 00903+4.2.1.-|UniPathway: UPA00671 RPE_RS06780 deab27eca566d7525bc239857e01ebf1 175 Pfam PF07284 2-vinyl bacteriochlorophyllide hydratase (BCHF) 17 154 6.5E-64 T 23-04-2016 IPR009905 2-vinyl bacteriochlorophyllide hydratase GO:0016836|GO:0019685|GO:0030494 KEGG: 00253+4.2.1.-|KEGG: 00300+4.2.1.-|KEGG: 00350+4.2.1.-|KEGG: 00362+4.2.1.-|KEGG: 00363+4.2.1.-|KEGG: 00400+4.2.1.-|KEGG: 00623+4.2.1.-|KEGG: 00626+4.2.1.-|KEGG: 00650+4.2.1.-|KEGG: 00860+4.2.1.-|KEGG: 00903+4.2.1.-|UniPathway: UPA00671 RPE_RS17465 6e8c4d59f9418c29990dc40ebf50a115 340 Pfam PF01032 FecCD transport family 16 330 4.1E-85 T 23-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 RPE_RS17465 6e8c4d59f9418c29990dc40ebf50a115 340 SUPERFAMILY SSF81345 5 330 3.14E-77 T 23-04-2016 IPR029022 ABC transporter, BtuC-like RPE_RS17465 6e8c4d59f9418c29990dc40ebf50a115 340 PANTHER PTHR30472:SF34 10 336 3.8E-117 T 23-04-2016 RPE_RS17465 6e8c4d59f9418c29990dc40ebf50a115 340 PANTHER PTHR30472 10 336 3.8E-117 T 23-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 RPE_RS17465 6e8c4d59f9418c29990dc40ebf50a115 340 Gene3D G3DSA:1.10.3470.10 8 334 3.2E-102 T 23-04-2016 IPR029022 ABC transporter, BtuC-like RPE_RS00940 03bf7f58e6c42e9afeb90012565fe40c 320 SUPERFAMILY SSF103481 198 302 3.01E-10 T 23-04-2016 RPE_RS00940 03bf7f58e6c42e9afeb90012565fe40c 320 SUPERFAMILY SSF103481 58 150 3.27E-16 T 23-04-2016 RPE_RS00940 03bf7f58e6c42e9afeb90012565fe40c 320 PANTHER PTHR22911 19 303 1.9E-110 T 23-04-2016 RPE_RS00940 03bf7f58e6c42e9afeb90012565fe40c 320 PANTHER PTHR22911:SF63 19 303 1.9E-110 T 23-04-2016 RPE_RS00940 03bf7f58e6c42e9afeb90012565fe40c 320 Pfam PF00892 EamA-like transporter family 163 299 1.8E-11 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RPE_RS00940 03bf7f58e6c42e9afeb90012565fe40c 320 Pfam PF00892 EamA-like transporter family 19 149 2.1E-19 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RPE_RS02925 61485932d0236d4a5b039a2c834b5b8c 276 PANTHER PTHR10992:SF854 6 259 1.0E-55 T 23-04-2016 RPE_RS02925 61485932d0236d4a5b039a2c834b5b8c 276 PANTHER PTHR10992 6 259 1.0E-55 T 23-04-2016 RPE_RS02925 61485932d0236d4a5b039a2c834b5b8c 276 Pfam PF12697 Alpha/beta hydrolase family 32 249 2.4E-13 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS02925 61485932d0236d4a5b039a2c834b5b8c 276 Gene3D G3DSA:3.40.50.1820 189 259 1.5E-32 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS02925 61485932d0236d4a5b039a2c834b5b8c 276 Gene3D G3DSA:3.40.50.1820 9 139 1.5E-32 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS02925 61485932d0236d4a5b039a2c834b5b8c 276 SUPERFAMILY SSF53474 7 256 3.19E-37 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS09465 74c3a0629688d5479d9076ea7bb729ab 752 Gene3D G3DSA:1.10.3810.10 112 282 8.0E-67 T 23-04-2016 RPE_RS09465 74c3a0629688d5479d9076ea7bb729ab 752 Gene3D G3DSA:3.40.710.10 283 664 5.1E-111 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS09465 74c3a0629688d5479d9076ea7bb729ab 752 PANTHER PTHR32282 34 662 4.6E-216 T 23-04-2016 RPE_RS09465 74c3a0629688d5479d9076ea7bb729ab 752 PANTHER PTHR32282:SF5 34 662 4.6E-216 T 23-04-2016 RPE_RS09465 74c3a0629688d5479d9076ea7bb729ab 752 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 121 654 3.6E-173 T 23-04-2016 RPE_RS09465 74c3a0629688d5479d9076ea7bb729ab 752 SUPERFAMILY SSF56601 313 659 3.69E-112 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS09465 74c3a0629688d5479d9076ea7bb729ab 752 SUPERFAMILY SSF56601 264 286 3.69E-112 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS09465 74c3a0629688d5479d9076ea7bb729ab 752 SUPERFAMILY SSF53955 99 307 1.52E-69 T 23-04-2016 IPR023346 Lysozyme-like domain RPE_RS09465 74c3a0629688d5479d9076ea7bb729ab 752 Pfam PF00912 Transglycosylase 116 282 6.9E-60 T 23-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 RPE_RS09465 74c3a0629688d5479d9076ea7bb729ab 752 Pfam PF00905 Penicillin binding protein transpeptidase domain 373 649 7.4E-27 T 23-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RPE_RS04650 6cb63a293889dab23852389193b5fed3 207 Pfam PF13505 Outer membrane protein beta-barrel domain 10 207 1.3E-27 T 23-04-2016 IPR027385 Outer membrane protein beta-barrel RPE_RS04650 6cb63a293889dab23852389193b5fed3 207 SUPERFAMILY SSF56925 41 207 4.45E-33 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RPE_RS04650 6cb63a293889dab23852389193b5fed3 207 PANTHER PTHR34001 3 207 9.0E-47 T 23-04-2016 RPE_RS04650 6cb63a293889dab23852389193b5fed3 207 Gene3D G3DSA:2.40.160.20 41 207 1.2E-38 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RPE_RS07665 4375ae262a0d5bba1e521b276c08e1af 885 SUPERFAMILY SSF64518 299 406 3.53E-9 T 23-04-2016 RPE_RS07665 4375ae262a0d5bba1e521b276c08e1af 885 SUPERFAMILY SSF64518 1 244 3.53E-9 T 23-04-2016 RPE_RS07665 4375ae262a0d5bba1e521b276c08e1af 885 SUPERFAMILY SSF64518 552 885 1.7E-32 T 23-04-2016 RPE_RS07665 4375ae262a0d5bba1e521b276c08e1af 885 Gene3D G3DSA:1.20.1330.10 713 825 9.6E-7 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RPE_RS07665 4375ae262a0d5bba1e521b276c08e1af 885 Pfam PF00669 Bacterial flagellin N-terminal helical region 12 117 7.8E-9 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RPE_RS07665 4375ae262a0d5bba1e521b276c08e1af 885 Pfam PF07482 Domain of Unknown Function (DUF1522) 486 592 9.0E-38 T 23-04-2016 IPR011087 Domain of unknown function DUF1522 RPE_RS07665 4375ae262a0d5bba1e521b276c08e1af 885 Pfam PF07482 Domain of Unknown Function (DUF1522) 339 450 2.3E-32 T 23-04-2016 IPR011087 Domain of unknown function DUF1522 RPE_RS07665 4375ae262a0d5bba1e521b276c08e1af 885 Pfam PF00700 Bacterial flagellin C-terminal helical region 800 884 4.7E-5 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RPE_RS05855 9843ecee07e1c0f1d503280e99bf395b 127 PANTHER PTHR30435 5 120 8.9E-13 T 23-04-2016 RPE_RS05855 9843ecee07e1c0f1d503280e99bf395b 127 PANTHER PTHR30435:SF12 5 120 8.9E-13 T 23-04-2016 RPE_RS05855 9843ecee07e1c0f1d503280e99bf395b 127 Pfam PF00460 Flagella basal body rod protein 9 37 2.3E-6 T 23-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RPE_RS07180 dcdef92f426df5526ce846570e04d8f2 462 Gene3D G3DSA:1.10.287.130 251 303 8.5E-12 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS07180 dcdef92f426df5526ce846570e04d8f2 462 SUPERFAMILY SSF47384 243 317 1.47E-10 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS07180 dcdef92f426df5526ce846570e04d8f2 462 PANTHER PTHR24423 200 462 4.4E-50 T 23-04-2016 RPE_RS07180 dcdef92f426df5526ce846570e04d8f2 462 PANTHER PTHR24423 20 35 4.4E-50 T 23-04-2016 RPE_RS07180 dcdef92f426df5526ce846570e04d8f2 462 Pfam PF00672 HAMP domain 190 254 2.9E-6 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS07180 dcdef92f426df5526ce846570e04d8f2 462 Gene3D G3DSA:3.30.565.10 304 462 3.6E-32 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS07180 dcdef92f426df5526ce846570e04d8f2 462 SMART SM00388 259 317 2.2E-8 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS07180 dcdef92f426df5526ce846570e04d8f2 462 SMART SM00387 355 462 4.0E-25 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS07180 dcdef92f426df5526ce846570e04d8f2 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 389 403 9.2E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS07180 dcdef92f426df5526ce846570e04d8f2 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 424 442 9.2E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS07180 dcdef92f426df5526ce846570e04d8f2 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 417 9.2E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS07180 dcdef92f426df5526ce846570e04d8f2 462 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 358 461 2.8E-19 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS07180 dcdef92f426df5526ce846570e04d8f2 462 SUPERFAMILY SSF55874 313 462 3.93E-33 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS01920 d0886f65b69de02062952c4852918db7 453 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 18 453 5.8E-79 T 23-04-2016 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 RPE_RS01920 d0886f65b69de02062952c4852918db7 453 Gene3D G3DSA:3.40.50.300 214 249 2.5E-6 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01920 d0886f65b69de02062952c4852918db7 453 Gene3D G3DSA:3.30.1360.120 3 122 6.7E-38 T 23-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RPE_RS01920 d0886f65b69de02062952c4852918db7 453 Gene3D G3DSA:3.40.50.300 288 374 1.1E-4 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01920 d0886f65b69de02062952c4852918db7 453 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 6 453 30.12 T 23-04-2016 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 RPE_RS01920 d0886f65b69de02062952c4852918db7 453 PANTHER PTHR11649 9 453 1.4E-162 T 23-04-2016 RPE_RS01920 d0886f65b69de02062952c4852918db7 453 PANTHER PTHR11649:SF56 9 453 1.4E-162 T 23-04-2016 RPE_RS01920 d0886f65b69de02062952c4852918db7 453 Gene3D G3DSA:1.20.120.430 250 273 5.3E-52 T 23-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 RPE_RS01920 d0886f65b69de02062952c4852918db7 453 Gene3D G3DSA:1.20.120.430 123 183 5.3E-52 T 23-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 RPE_RS01920 d0886f65b69de02062952c4852918db7 453 Gene3D G3DSA:1.20.120.430 387 453 5.3E-52 T 23-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 RPE_RS01920 d0886f65b69de02062952c4852918db7 453 SUPERFAMILY SSF52540 190 373 2.23E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01920 d0886f65b69de02062952c4852918db7 453 SUPERFAMILY SSF52540 73 153 2.23E-41 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01920 d0886f65b69de02062952c4852918db7 453 Pfam PF12631 MnmE helical domain 124 450 3.8E-47 T 23-04-2016 IPR025867 MnmE, helical domain RPE_RS01920 d0886f65b69de02062952c4852918db7 453 Pfam PF10396 GTP-binding protein TrmE N-terminus 7 121 1.4E-33 T 23-04-2016 IPR018948 GTP-binding protein TrmE, N-terminal RPE_RS01920 d0886f65b69de02062952c4852918db7 453 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 220 372 1.5E-21 T 23-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RPE_RS01920 d0886f65b69de02062952c4852918db7 453 Pfam PF01926 50S ribosome-binding GTPase 221 310 7.4E-22 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RPE_RS14175 1ddf6208fae953b9a8df28a79d09a652 160 Pfam PF04355 SmpA / OmlA family 47 122 2.3E-16 T 23-04-2016 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 RPE_RS00580 902e43f4574db64b80a25669ac9e14d4 198 Gene3D G3DSA:1.10.10.690 84 196 6.4E-36 T 23-04-2016 IPR027405 YidB-like RPE_RS00580 902e43f4574db64b80a25669ac9e14d4 198 SUPERFAMILY SSF140804 85 196 1.44E-33 T 23-04-2016 IPR027405 YidB-like RPE_RS00580 902e43f4574db64b80a25669ac9e14d4 198 Pfam PF06078 Bacterial protein of unknown function (DUF937) 9 184 4.9E-29 T 23-04-2016 IPR009282 Protein of unknown function DUF937 RPE_RS01895 24ae27e4f3074885c096584fb08e8a1e 199 Pfam PF01121 Dephospho-CoA kinase 3 175 4.2E-40 T 23-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 RPE_RS01895 24ae27e4f3074885c096584fb08e8a1e 199 PANTHER PTHR10695 1 190 1.2E-52 T 23-04-2016 RPE_RS01895 24ae27e4f3074885c096584fb08e8a1e 199 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 3 177 3.0E-35 T 23-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 RPE_RS01895 24ae27e4f3074885c096584fb08e8a1e 199 Gene3D G3DSA:3.40.50.300 1 191 1.4E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01895 24ae27e4f3074885c096584fb08e8a1e 199 SUPERFAMILY SSF52540 1 188 1.31E-33 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01895 24ae27e4f3074885c096584fb08e8a1e 199 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 1 194 25.252 T 23-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 RPE_RS14155 1a990ec44641bccdbb4773cb117fad75 721 PANTHER PTHR32552:SF37 1 580 5.2E-89 T 23-04-2016 RPE_RS14155 1a990ec44641bccdbb4773cb117fad75 721 PANTHER PTHR32552:SF37 596 721 5.2E-89 T 23-04-2016 RPE_RS14155 1a990ec44641bccdbb4773cb117fad75 721 PANTHER PTHR32552 1 580 5.2E-89 T 23-04-2016 RPE_RS14155 1a990ec44641bccdbb4773cb117fad75 721 Pfam PF00593 TonB dependent receptor 436 705 1.1E-32 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RPE_RS14155 1a990ec44641bccdbb4773cb117fad75 721 Gene3D G3DSA:2.40.170.20 102 258 9.1E-103 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RPE_RS14155 1a990ec44641bccdbb4773cb117fad75 721 Gene3D G3DSA:2.40.170.20 297 720 9.1E-103 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RPE_RS14155 1a990ec44641bccdbb4773cb117fad75 721 Pfam PF07715 TonB-dependent Receptor Plug Domain 1 103 1.8E-11 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RPE_RS14155 1a990ec44641bccdbb4773cb117fad75 721 PANTHER PTHR32552 596 721 5.2E-89 T 23-04-2016 RPE_RS14155 1a990ec44641bccdbb4773cb117fad75 721 Gene3D G3DSA:2.170.130.10 1 101 1.5E-14 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RPE_RS14155 1a990ec44641bccdbb4773cb117fad75 721 SUPERFAMILY SSF56935 1 720 1.58E-98 T 23-04-2016 RPE_RS10080 ee6f8c547e239e7fb9c0f391696a69ca 292 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 65 87 - T 23-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RPE_RS10080 ee6f8c547e239e7fb9c0f391696a69ca 292 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 29 191 9.7E-33 T 23-04-2016 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 RPE_RS10080 ee6f8c547e239e7fb9c0f391696a69ca 292 Pfam PF08009 CDP-alcohol phosphatidyltransferase 2 206 242 1.2E-12 T 23-04-2016 IPR012616 CDP-alcohol phosphatidyltransferase, C-terminal RPE_RS10080 ee6f8c547e239e7fb9c0f391696a69ca 292 PANTHER PTHR15362 13 155 4.2E-32 T 23-04-2016 RPE_RS10080 ee6f8c547e239e7fb9c0f391696a69ca 292 Pfam PF01066 CDP-alcohol phosphatidyltransferase 24 87 2.5E-14 T 23-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RPE_RS08150 dc330b6d9f55f09fdfa7f6793a6ded56 415 Pfam PF03781 Sulfatase-modifying factor enzyme 1 196 337 6.2E-23 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme RPE_RS08150 dc330b6d9f55f09fdfa7f6793a6ded56 415 PANTHER PTHR23150 1 411 4.5E-114 T 23-04-2016 RPE_RS08150 dc330b6d9f55f09fdfa7f6793a6ded56 415 PANTHER PTHR23150:SF24 1 411 4.5E-114 T 23-04-2016 RPE_RS08150 dc330b6d9f55f09fdfa7f6793a6ded56 415 Pfam PF12867 DinB superfamily 29 165 1.2E-13 T 23-04-2016 IPR024775 DinB-like domain RPE_RS08150 dc330b6d9f55f09fdfa7f6793a6ded56 415 SUPERFAMILY SSF109854 17 161 1.72E-7 T 23-04-2016 RPE_RS08150 dc330b6d9f55f09fdfa7f6793a6ded56 415 SUPERFAMILY SSF56436 197 411 1.41E-63 T 23-04-2016 IPR016187 C-type lectin fold RPE_RS08150 dc330b6d9f55f09fdfa7f6793a6ded56 415 TIGRFAM TIGR03440 egtB_TIGR03440: ergothioneine biosynthesis protein EgtB 26 411 8.9E-160 T 23-04-2016 IPR017806 Ergothioneine biosynthesis protein EgtB GO:0052699 KEGG: 00340+1.14.99.50|MetaCyc: PWY-7255|UniPathway: UPA01014 RPE_RS08150 dc330b6d9f55f09fdfa7f6793a6ded56 415 Gene3D G3DSA:3.90.1580.10 190 335 1.3E-38 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme RPE_RS08150 dc330b6d9f55f09fdfa7f6793a6ded56 415 Gene3D G3DSA:3.90.1580.10 336 411 6.9E-16 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme RPE_RS08885 e73b45b6062e2d96c8b12de41549bca7 244 PIRSF PIRSF000857 1 244 4.0E-70 T 23-04-2016 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8|UniPathway: UPA00140 RPE_RS08885 e73b45b6062e2d96c8b12de41549bca7 244 Gene3D G3DSA:3.40.50.620 18 212 1.2E-43 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS08885 e73b45b6062e2d96c8b12de41549bca7 244 PANTHER PTHR23293:SF5 21 239 3.6E-72 T 23-04-2016 RPE_RS08885 e73b45b6062e2d96c8b12de41549bca7 244 PANTHER PTHR23293 21 239 3.6E-72 T 23-04-2016 RPE_RS08885 e73b45b6062e2d96c8b12de41549bca7 244 SUPERFAMILY SSF52402 21 203 3.77E-40 T 23-04-2016 RPE_RS08885 e73b45b6062e2d96c8b12de41549bca7 244 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 48 215 3.6E-32 T 23-04-2016 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 RPE_RS23850 4c84b9933b3281f0872e4e94f7a3c884 598 SUPERFAMILY SSF102114 176 436 5.23E-30 T 23-04-2016 RPE_RS23850 4c84b9933b3281f0872e4e94f7a3c884 598 SMART SM00729 205 424 6.3E-18 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RPE_RS23850 4c84b9933b3281f0872e4e94f7a3c884 598 PANTHER PTHR11918:SF64 65 541 1.6E-35 T 23-04-2016 RPE_RS23850 4c84b9933b3281f0872e4e94f7a3c884 598 Gene3D G3DSA:3.80.30.20 210 435 2.2E-29 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RPE_RS23850 4c84b9933b3281f0872e4e94f7a3c884 598 Pfam PF04055 Radical SAM superfamily 212 376 4.7E-15 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RPE_RS23850 4c84b9933b3281f0872e4e94f7a3c884 598 PANTHER PTHR11918 65 541 1.6E-35 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein RPE_RS14885 1feeaef1f4425f8dea75e6192d917810 122 PANTHER PTHR13696:SF62 22 120 3.9E-22 T 23-04-2016 RPE_RS14885 1feeaef1f4425f8dea75e6192d917810 122 Pfam PF01883 Domain of unknown function DUF59 28 100 1.4E-21 T 23-04-2016 IPR002744 Domain of unknown function DUF59 RPE_RS14885 1feeaef1f4425f8dea75e6192d917810 122 PANTHER PTHR13696 22 120 3.9E-22 T 23-04-2016 RPE_RS14885 1feeaef1f4425f8dea75e6192d917810 122 TIGRFAM TIGR02945 SUF_assoc: FeS assembly SUF system protein 25 122 2.3E-45 T 23-04-2016 IPR014291 SUF system FeS cluster assembly associated RPE_RS14885 1feeaef1f4425f8dea75e6192d917810 122 SUPERFAMILY SSF117916 25 120 3.11E-31 T 23-04-2016 RPE_RS15530 a669dde78d89d8f585d08950636f3b58 748 SUPERFAMILY SSF54862 607 691 6.41E-11 T 23-04-2016 RPE_RS15530 a669dde78d89d8f585d08950636f3b58 748 SUPERFAMILY SSF54862 523 539 6.41E-11 T 23-04-2016 RPE_RS15530 a669dde78d89d8f585d08950636f3b58 748 SMART SM00900 73 162 2.7E-8 T 23-04-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 RPE_RS15530 a669dde78d89d8f585d08950636f3b58 748 PIRSF PIRSF036354 1 745 0.0 T 23-04-2016 IPR011399 Nitrous oxide reductase expression regulator NosR GO:0003677|GO:0016020|GO:0045893 RPE_RS15530 a669dde78d89d8f585d08950636f3b58 748 Pfam PF04205 FMN-binding domain 73 148 1.8E-6 T 23-04-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 RPE_RS15530 a669dde78d89d8f585d08950636f3b58 748 PANTHER PTHR30224 401 739 0.0 T 23-04-2016 RPE_RS15530 a669dde78d89d8f585d08950636f3b58 748 PANTHER PTHR30224 3 360 0.0 T 23-04-2016 RPE_RS15530 a669dde78d89d8f585d08950636f3b58 748 Pfam PF12801 4Fe-4S binding domain 607 652 6.9E-6 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RPE_RS15530 a669dde78d89d8f585d08950636f3b58 748 Pfam PF12801 4Fe-4S binding domain 506 550 8.0E-12 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RPE_RS15530 a669dde78d89d8f585d08950636f3b58 748 PANTHER PTHR30224:SF4 401 739 0.0 T 23-04-2016 RPE_RS15530 a669dde78d89d8f585d08950636f3b58 748 PANTHER PTHR30224:SF4 3 360 0.0 T 23-04-2016 RPE_RS15530 a669dde78d89d8f585d08950636f3b58 748 Gene3D G3DSA:3.30.70.20 660 711 6.1E-5 T 23-04-2016 RPE_RS03965 4249cc3aa7711fe528e8330d60b870b7 127 PANTHER PTHR33931 1 127 2.7E-27 T 23-04-2016 RPE_RS03965 4249cc3aa7711fe528e8330d60b870b7 127 Pfam PF03788 LrgA family 12 113 4.2E-28 T 23-04-2016 IPR005538 LrgA/CidA family GO:0016021 RPE_RS19870 b6d3356b565eb9c9913b3c92589ba1ec 142 Gene3D G3DSA:1.20.120.10 94 142 4.5E-5 T 23-04-2016 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 RPE_RS19870 b6d3356b565eb9c9913b3c92589ba1ec 142 SUPERFAMILY SSF47175 27 140 2.94E-15 T 23-04-2016 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 RPE_RS02670 9408ac573239c76ec6a4256f5c2905f0 406 PANTHER PTHR23534 1 399 4.0E-86 T 23-04-2016 RPE_RS02670 9408ac573239c76ec6a4256f5c2905f0 406 Pfam PF07690 Major Facilitator Superfamily 24 253 5.9E-16 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RPE_RS02670 9408ac573239c76ec6a4256f5c2905f0 406 Gene3D G3DSA:1.20.1250.20 218 399 1.5E-16 T 23-04-2016 RPE_RS02670 9408ac573239c76ec6a4256f5c2905f0 406 Gene3D G3DSA:1.20.1250.20 17 201 1.9E-15 T 23-04-2016 RPE_RS02670 9408ac573239c76ec6a4256f5c2905f0 406 SUPERFAMILY SSF103473 17 399 4.58E-43 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS06145 9ce123dc0a5cb3d3b0a8a4ca5891505a 563 Gene3D G3DSA:2.40.110.10 195 296 2.0E-15 T 23-04-2016 RPE_RS06145 9ce123dc0a5cb3d3b0a8a4ca5891505a 563 PANTHER PTHR10909 23 477 1.9E-176 T 23-04-2016 RPE_RS06145 9ce123dc0a5cb3d3b0a8a4ca5891505a 563 SUPERFAMILY SSF47203 308 460 1.43E-37 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS06145 9ce123dc0a5cb3d3b0a8a4ca5891505a 563 PANTHER PTHR10909:SF289 23 477 1.9E-176 T 23-04-2016 RPE_RS06145 9ce123dc0a5cb3d3b0a8a4ca5891505a 563 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 195 291 1.5E-12 T 23-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 RPE_RS06145 9ce123dc0a5cb3d3b0a8a4ca5891505a 563 SUPERFAMILY SSF56645 77 312 4.23E-31 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RPE_RS06145 9ce123dc0a5cb3d3b0a8a4ca5891505a 563 Gene3D G3DSA:1.20.140.10 297 462 5.6E-35 T 23-04-2016 RPE_RS06145 9ce123dc0a5cb3d3b0a8a4ca5891505a 563 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 416 435 - T 23-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RPE_RS06145 9ce123dc0a5cb3d3b0a8a4ca5891505a 563 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 303 457 1.0E-28 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS11825 6f362bf5f37c8f6dce0bd0378459e172 192 Gene3D G3DSA:1.20.120.160 61 123 7.1E-8 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS11825 6f362bf5f37c8f6dce0bd0378459e172 192 Pfam PF01627 Hpt domain 45 129 2.2E-8 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS11825 6f362bf5f37c8f6dce0bd0378459e172 192 SUPERFAMILY SSF47226 52 166 6.8E-13 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS15810 2bbe1184d82c713fd1fc58fdc88df55a 470 TIGRFAM TIGR04107 rSAM_HutW: putative heme utilization radical SAM enzyme HutW 44 460 3.9E-148 T 23-04-2016 IPR026332 Putative heme utilization radical SAM enzyme HutW RPE_RS15810 2bbe1184d82c713fd1fc58fdc88df55a 470 SUPERFAMILY SSF102114 75 458 8.63E-72 T 23-04-2016 RPE_RS15810 2bbe1184d82c713fd1fc58fdc88df55a 470 PANTHER PTHR13932 81 467 1.6E-81 T 23-04-2016 RPE_RS15810 2bbe1184d82c713fd1fc58fdc88df55a 470 SMART SM00729 81 301 4.8E-35 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RPE_RS15810 2bbe1184d82c713fd1fc58fdc88df55a 470 Gene3D G3DSA:3.80.30.20 83 284 3.3E-23 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RPE_RS15810 2bbe1184d82c713fd1fc58fdc88df55a 470 Pfam PF04055 Radical SAM superfamily 86 251 2.9E-12 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RPE_RS15810 2bbe1184d82c713fd1fc58fdc88df55a 470 PANTHER PTHR13932:SF5 81 467 1.6E-81 T 23-04-2016 RPE_RS14355 1fd9584ef5df784178a92968973952c3 154 PANTHER PTHR11545 1 141 1.9E-70 T 23-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RPE_RS14355 1fd9584ef5df784178a92968973952c3 154 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 5 142 1.9E-58 T 23-04-2016 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 RPE_RS14355 1fd9584ef5df784178a92968973952c3 154 Gene3D G3DSA:3.90.1180.10 3 142 1.2E-60 T 23-04-2016 IPR023564 Ribosomal protein L13 domain GO:0003735|GO:0005840|GO:0006412 RPE_RS14355 1fd9584ef5df784178a92968973952c3 154 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 147 27.805 T 23-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RPE_RS14355 1fd9584ef5df784178a92968973952c3 154 PIRSF PIRSF002181 1 154 2.3E-50 T 23-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RPE_RS14355 1fd9584ef5df784178a92968973952c3 154 Pfam PF00572 Ribosomal protein L13 14 139 3.1E-52 T 23-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RPE_RS14355 1fd9584ef5df784178a92968973952c3 154 SUPERFAMILY SSF52161 1 140 2.09E-56 T 23-04-2016 IPR023564 Ribosomal protein L13 domain GO:0003735|GO:0005840|GO:0006412 RPE_RS06795 a3e7b33f12b7c8fe2a94561ed901d2c6 1248 Pfam PF11965 Domain of unknown function (DUF3479) 14 172 1.5E-50 T 23-04-2016 IPR022571 Magnesium chelatase, subunit H, N-terminal GO:0016851 KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RPE_RS06795 a3e7b33f12b7c8fe2a94561ed901d2c6 1248 PANTHER PTHR23304 412 1244 0.0 T 23-04-2016 RPE_RS06795 a3e7b33f12b7c8fe2a94561ed901d2c6 1248 PANTHER PTHR23304 13 394 0.0 T 23-04-2016 RPE_RS06795 a3e7b33f12b7c8fe2a94561ed901d2c6 1248 TIGRFAM TIGR02025 BchH: magnesium chelatase, H subunit 14 771 5.3E-273 T 23-04-2016 IPR011771 Magnesium-chelatase, subunit H GO:0015995|GO:0016851 KEGG: 00860+6.6.1.1|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RPE_RS06795 a3e7b33f12b7c8fe2a94561ed901d2c6 1248 PANTHER PTHR23304:SF109 412 1244 0.0 T 23-04-2016 RPE_RS06795 a3e7b33f12b7c8fe2a94561ed901d2c6 1248 PANTHER PTHR23304:SF109 13 394 0.0 T 23-04-2016 RPE_RS06795 a3e7b33f12b7c8fe2a94561ed901d2c6 1248 Pfam PF02514 CobN/Magnesium Chelatase 176 1226 0.0 T 23-04-2016 IPR003672 CobN/magnesium chelatase GO:0009058 RPE_RS03860 53b41c7e56517f7aa420c93bb336d2d1 897 Pfam PF07859 alpha/beta hydrolase fold 640 844 5.6E-76 T 23-04-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 RPE_RS03860 53b41c7e56517f7aa420c93bb336d2d1 897 SUPERFAMILY SSF51905 16 229 5.18E-48 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS03860 53b41c7e56517f7aa420c93bb336d2d1 897 PANTHER PTHR23023 273 628 4.5E-176 T 23-04-2016 RPE_RS03860 53b41c7e56517f7aa420c93bb336d2d1 897 PANTHER PTHR23023 19 231 4.5E-176 T 23-04-2016 RPE_RS03860 53b41c7e56517f7aa420c93bb336d2d1 897 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 25 224 2.4E-12 T 23-04-2016 RPE_RS03860 53b41c7e56517f7aa420c93bb336d2d1 897 Gene3D G3DSA:3.50.50.60 381 542 8.0E-12 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS03860 53b41c7e56517f7aa420c93bb336d2d1 897 Gene3D G3DSA:3.50.50.60 15 265 4.3E-58 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS03860 53b41c7e56517f7aa420c93bb336d2d1 897 SUPERFAMILY SSF51905 160 395 6.91E-47 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS03860 53b41c7e56517f7aa420c93bb336d2d1 897 SUPERFAMILY SSF53474 616 843 1.49E-71 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS03860 53b41c7e56517f7aa420c93bb336d2d1 897 PANTHER PTHR23023:SF122 273 628 4.5E-176 T 23-04-2016 RPE_RS03860 53b41c7e56517f7aa420c93bb336d2d1 897 PANTHER PTHR23023:SF122 19 231 4.5E-176 T 23-04-2016 RPE_RS03860 53b41c7e56517f7aa420c93bb336d2d1 897 Gene3D G3DSA:3.40.50.1820 564 848 1.8E-92 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS23535 c3b49bc8a012b1b73c566570a3bf0f0d 237 Pfam PF01618 MotA/TolQ/ExbB proton channel family 89 219 3.0E-40 T 23-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 RPE_RS23535 c3b49bc8a012b1b73c566570a3bf0f0d 237 PANTHER PTHR30625 4 236 2.3E-63 T 23-04-2016 RPE_RS23535 c3b49bc8a012b1b73c566570a3bf0f0d 237 PANTHER PTHR30625:SF3 4 236 2.3E-63 T 23-04-2016 RPE_RS23535 c3b49bc8a012b1b73c566570a3bf0f0d 237 TIGRFAM TIGR02796 tolQ: protein TolQ 19 231 9.2E-85 T 23-04-2016 IPR014163 Tol-Pal system, TolQ GO:0015031|GO:0016021 RPE_RS18025 ef81cffae95151d0854b03bdc4b8d49d 123 SUPERFAMILY SSF48300 3 59 2.62E-16 T 23-04-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS18025 ef81cffae95151d0854b03bdc4b8d49d 123 Gene3D G3DSA:1.20.5.710 5 51 7.5E-17 T 23-04-2016 RPE_RS18025 ef81cffae95151d0854b03bdc4b8d49d 123 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 59 123 2.0E-27 T 23-04-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 RPE_RS18025 ef81cffae95151d0854b03bdc4b8d49d 123 Gene3D G3DSA:3.30.1390.10 52 123 3.1E-35 T 23-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RPE_RS18025 ef81cffae95151d0854b03bdc4b8d49d 123 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 4 49 9.7E-19 T 23-04-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS18025 ef81cffae95151d0854b03bdc4b8d49d 123 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 57 123 1.4E-31 T 23-04-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 RPE_RS18025 ef81cffae95151d0854b03bdc4b8d49d 123 SUPERFAMILY SSF54736 52 123 7.32E-26 T 23-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RPE_RS18025 ef81cffae95151d0854b03bdc4b8d49d 123 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 1 123 24.935 T 23-04-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS18025 ef81cffae95151d0854b03bdc4b8d49d 123 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 123 1.6E-48 T 23-04-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS16030 0945f1d29cb18f6e8fa00c97724c52e4 112 SUPERFAMILY SSF52518 3 99 3.75E-14 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS16030 0945f1d29cb18f6e8fa00c97724c52e4 112 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 2 88 6.8E-9 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RPE_RS16030 0945f1d29cb18f6e8fa00c97724c52e4 112 Gene3D G3DSA:3.40.50.970 2 97 2.7E-15 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS05370 304c596cafdcac13aa497f336daf74e8 474 PANTHER PTHR11206:SF153 4 468 1.9E-99 T 23-04-2016 RPE_RS05370 304c596cafdcac13aa497f336daf74e8 474 TIGRFAM TIGR00797 matE: MATE efflux family protein 38 442 3.2E-72 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RPE_RS05370 304c596cafdcac13aa497f336daf74e8 474 Pfam PF01554 MatE 264 429 6.0E-24 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RPE_RS05370 304c596cafdcac13aa497f336daf74e8 474 Pfam PF01554 MatE 38 196 2.1E-28 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RPE_RS05370 304c596cafdcac13aa497f336daf74e8 474 PANTHER PTHR11206 4 468 1.9E-99 T 23-04-2016 RPE_RS05370 304c596cafdcac13aa497f336daf74e8 474 PIRSF PIRSF006603 23 473 2.4E-61 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RPE_RS08285 c79dfb65a25df6690e28981bdbe5c194 333 Gene3D G3DSA:3.60.70.12 2 318 1.2E-80 T 23-04-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 RPE_RS08285 c79dfb65a25df6690e28981bdbe5c194 333 PANTHER PTHR36512 2 332 2.7E-126 T 23-04-2016 RPE_RS08285 c79dfb65a25df6690e28981bdbe5c194 333 PANTHER PTHR36512:SF3 2 332 2.7E-126 T 23-04-2016 RPE_RS08285 c79dfb65a25df6690e28981bdbe5c194 333 SUPERFAMILY SSF56266 2 317 1.39E-67 T 23-04-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 RPE_RS08285 c79dfb65a25df6690e28981bdbe5c194 333 Pfam PF03576 Peptidase family S58 3 318 1.4E-61 T 23-04-2016 IPR005321 Peptidase S58, DmpA RPE_RS18695 a96676c5092dc3b9bd60a402430f65dc 275 PANTHER PTHR33643 18 268 6.0E-50 T 23-04-2016 RPE_RS18695 a96676c5092dc3b9bd60a402430f65dc 275 Pfam PF01774 UreD urease accessory protein 57 255 1.1E-45 T 23-04-2016 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 RPE_RS18695 a96676c5092dc3b9bd60a402430f65dc 275 PANTHER PTHR33643:SF1 18 268 6.0E-50 T 23-04-2016 RPE_RS18695 a96676c5092dc3b9bd60a402430f65dc 275 Hamap MF_01384 Urease accessory protein UreD [ureD]. 16 266 25.132 T 23-04-2016 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 RPE_RS04255 4f8a2e6ea0280675fcef1edd5d61d12f 327 Gene3D G3DSA:3.60.15.10 1 327 7.3E-97 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS04255 4f8a2e6ea0280675fcef1edd5d61d12f 327 Pfam PF12706 Beta-lactamase superfamily domain 68 293 6.0E-47 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS04255 4f8a2e6ea0280675fcef1edd5d61d12f 327 Hamap MF_00653 Coenzyme PQQ synthesis protein B [pqqB]. 1 327 148.038 T 23-04-2016 IPR011842 Coenzyme PQQ biosynthesis protein B GO:0006810|GO:0018189 UniPathway: UPA00539 RPE_RS04255 4f8a2e6ea0280675fcef1edd5d61d12f 327 TIGRFAM TIGR02108 PQQ_syn_pqqB: coenzyme PQQ biosynthesis protein B 3 327 3.5E-120 T 23-04-2016 IPR011842 Coenzyme PQQ biosynthesis protein B GO:0006810|GO:0018189 UniPathway: UPA00539 RPE_RS04255 4f8a2e6ea0280675fcef1edd5d61d12f 327 SUPERFAMILY SSF56281 2 327 1.87E-44 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS03030 26cb2aed2a77150b3715f9caa613525d 436 Pfam PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component 55 424 1.4E-48 T 23-04-2016 IPR010327 FldB/FldC dehydratase alpha/beta subunit RPE_RS03030 26cb2aed2a77150b3715f9caa613525d 436 PANTHER PTHR30548 1 432 1.2E-42 T 23-04-2016 RPE_RS03030 26cb2aed2a77150b3715f9caa613525d 436 TIGRFAM TIGR02260 benz_CoA_red_B: benzoyl-CoA reductase, subunit B 13 425 3.8E-279 T 23-04-2016 IPR011955 Benzoyl-CoA reductase, subunit B KEGG: 00362+1.3.7.8 RPE_RS11485 90327d292d9593b2b15c4116ed9de9e0 734 SMART SM00388 346 411 1.2E-22 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS11485 90327d292d9593b2b15c4116ed9de9e0 734 Gene3D G3DSA:3.30.565.10 412 573 5.8E-44 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS11485 90327d292d9593b2b15c4116ed9de9e0 734 SMART SM00448 606 720 8.1E-35 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS11485 90327d292d9593b2b15c4116ed9de9e0 734 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 458 571 2.7E-28 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS11485 90327d292d9593b2b15c4116ed9de9e0 734 SUPERFAMILY SSF47384 334 412 4.51E-18 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS11485 90327d292d9593b2b15c4116ed9de9e0 734 SMART SM00387 458 574 5.7E-36 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS11485 90327d292d9593b2b15c4116ed9de9e0 734 Gene3D G3DSA:1.10.287.130 344 407 3.0E-14 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS11485 90327d292d9593b2b15c4116ed9de9e0 734 PRINTS PR00344 Bacterial sensor protein C-terminal signature 517 527 1.3E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS11485 90327d292d9593b2b15c4116ed9de9e0 734 PRINTS PR00344 Bacterial sensor protein C-terminal signature 558 571 1.3E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS11485 90327d292d9593b2b15c4116ed9de9e0 734 PRINTS PR00344 Bacterial sensor protein C-terminal signature 499 513 1.3E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS11485 90327d292d9593b2b15c4116ed9de9e0 734 PRINTS PR00344 Bacterial sensor protein C-terminal signature 534 552 1.3E-13 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS11485 90327d292d9593b2b15c4116ed9de9e0 734 Gene3D G3DSA:3.30.450.20 192 302 6.1E-4 T 23-04-2016 RPE_RS11485 90327d292d9593b2b15c4116ed9de9e0 734 Gene3D G3DSA:3.30.450.20 124 191 3.8E-8 T 23-04-2016 RPE_RS11485 90327d292d9593b2b15c4116ed9de9e0 734 Pfam PF00072 Response regulator receiver domain 608 719 5.7E-26 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS11485 90327d292d9593b2b15c4116ed9de9e0 734 PANTHER PTHR24423 325 722 1.3E-145 T 23-04-2016 RPE_RS11485 90327d292d9593b2b15c4116ed9de9e0 734 PANTHER PTHR24423:SF491 325 722 1.3E-145 T 23-04-2016 RPE_RS11485 90327d292d9593b2b15c4116ed9de9e0 734 Pfam PF00512 His Kinase A (phospho-acceptor) domain 346 410 2.2E-17 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS11485 90327d292d9593b2b15c4116ed9de9e0 734 SUPERFAMILY SSF55874 400 570 1.19E-43 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS11485 90327d292d9593b2b15c4116ed9de9e0 734 Pfam PF02743 Cache domain 66 234 8.7E-12 T 23-04-2016 IPR033479 Double Cache domain 1 RPE_RS11485 90327d292d9593b2b15c4116ed9de9e0 734 Gene3D G3DSA:3.40.50.2300 605 728 2.1E-39 T 23-04-2016 RPE_RS11485 90327d292d9593b2b15c4116ed9de9e0 734 SUPERFAMILY SSF52172 605 725 4.84E-36 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS08320 fb653d500d3f324be70829118585a2cb 305 PANTHER PTHR11795 1 305 1.5E-134 T 23-04-2016 RPE_RS08320 fb653d500d3f324be70829118585a2cb 305 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 289 1.1E-53 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RPE_RS08320 fb653d500d3f324be70829118585a2cb 305 PANTHER PTHR11795:SF371 1 305 1.5E-134 T 23-04-2016 RPE_RS06650 33ea9a0837e5440af0806b8f04b500a0 300 PANTHER PTHR10755 19 299 4.8E-101 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RPE_RS06650 33ea9a0837e5440af0806b8f04b500a0 300 PIRSF PIRSF000166 1 300 1.7E-102 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RPE_RS06650 33ea9a0837e5440af0806b8f04b500a0 300 Gene3D G3DSA:3.40.1500.10 13 299 1.6E-102 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RPE_RS06650 33ea9a0837e5440af0806b8f04b500a0 300 PRINTS PR00073 Coprogen oxidase signature 54 70 2.4E-46 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RPE_RS06650 33ea9a0837e5440af0806b8f04b500a0 300 PRINTS PR00073 Coprogen oxidase signature 185 214 2.4E-46 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RPE_RS06650 33ea9a0837e5440af0806b8f04b500a0 300 PRINTS PR00073 Coprogen oxidase signature 114 138 2.4E-46 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RPE_RS06650 33ea9a0837e5440af0806b8f04b500a0 300 PRINTS PR00073 Coprogen oxidase signature 285 300 2.4E-46 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RPE_RS06650 33ea9a0837e5440af0806b8f04b500a0 300 PRINTS PR00073 Coprogen oxidase signature 257 284 2.4E-46 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RPE_RS06650 33ea9a0837e5440af0806b8f04b500a0 300 PRINTS PR00073 Coprogen oxidase signature 72 93 2.4E-46 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RPE_RS06650 33ea9a0837e5440af0806b8f04b500a0 300 Pfam PF01218 Coproporphyrinogen III oxidase 24 300 4.4E-84 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RPE_RS06650 33ea9a0837e5440af0806b8f04b500a0 300 SUPERFAMILY SSF102886 15 300 3.53E-103 T 23-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RPE_RS21845 1bf15c0a63aafaef7f754243157aa865 145 Pfam PF03960 ArsC family 66 111 1.2E-6 T 23-04-2016 IPR006660 Arsenate reductase-like RPE_RS21845 1bf15c0a63aafaef7f754243157aa865 145 Gene3D G3DSA:3.40.30.10 1 118 2.4E-20 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS21845 1bf15c0a63aafaef7f754243157aa865 145 SUPERFAMILY SSF52833 4 118 4.92E-27 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS21845 1bf15c0a63aafaef7f754243157aa865 145 TIGRFAM TIGR01616 nitro_assoc: nitrogenase-associated protein 2 127 1.8E-49 T 23-04-2016 IPR006503 Nitrogenase-associated protein RPE_RS07930 7b7961b206b24b8cae6606f1aa9b555c 217 Pfam PF00856 SET domain 18 115 4.3E-20 T 23-04-2016 IPR001214 SET domain GO:0005515 RPE_RS07930 7b7961b206b24b8cae6606f1aa9b555c 217 Gene3D G3DSA:2.170.270.10 15 135 1.5E-30 T 23-04-2016 RPE_RS07930 7b7961b206b24b8cae6606f1aa9b555c 217 PANTHER PTHR22884:SF276 16 130 4.1E-24 T 23-04-2016 RPE_RS07930 7b7961b206b24b8cae6606f1aa9b555c 217 PANTHER PTHR22884 16 130 4.1E-24 T 23-04-2016 RPE_RS07930 7b7961b206b24b8cae6606f1aa9b555c 217 SMART SM00317 8 121 2.9E-30 T 23-04-2016 IPR001214 SET domain GO:0005515 RPE_RS07930 7b7961b206b24b8cae6606f1aa9b555c 217 SUPERFAMILY SSF82199 16 133 4.45E-35 T 23-04-2016 RPE_RS16090 ad4b35fc31d0b1cec2873f6e6dfe0c0b 384 Gene3D G3DSA:3.40.50.2300 145 302 2.6E-29 T 23-04-2016 RPE_RS16090 ad4b35fc31d0b1cec2873f6e6dfe0c0b 384 PANTHER PTHR30483:SF7 10 382 4.5E-142 T 23-04-2016 RPE_RS16090 ad4b35fc31d0b1cec2873f6e6dfe0c0b 384 Pfam PF13458 Periplasmic binding protein 25 343 5.6E-55 T 23-04-2016 IPR028081 Leucine-binding protein domain RPE_RS16090 ad4b35fc31d0b1cec2873f6e6dfe0c0b 384 SUPERFAMILY SSF53822 24 382 1.86E-66 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RPE_RS16090 ad4b35fc31d0b1cec2873f6e6dfe0c0b 384 Gene3D G3DSA:3.40.50.2300 303 359 2.1E-28 T 23-04-2016 RPE_RS16090 ad4b35fc31d0b1cec2873f6e6dfe0c0b 384 Gene3D G3DSA:3.40.50.2300 22 144 2.1E-28 T 23-04-2016 RPE_RS16090 ad4b35fc31d0b1cec2873f6e6dfe0c0b 384 PANTHER PTHR30483 10 382 4.5E-142 T 23-04-2016 RPE_RS15360 514ce0b0345ded485f5962b9032c14b4 332 Pfam PF10756 Bacterial PH domain 169 234 4.5E-5 T 23-04-2016 IPR019692 Protein of unknown function DUF2581 RPE_RS06210 949f57c6dd0f396f49ae1c108687156e 99 PANTHER PTHR33336 1 99 5.9E-41 T 23-04-2016 RPE_RS06210 949f57c6dd0f396f49ae1c108687156e 99 SUPERFAMILY SSF54909 1 91 5.72E-27 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RPE_RS06210 949f57c6dd0f396f49ae1c108687156e 99 PANTHER PTHR33336:SF1 1 99 5.9E-41 T 23-04-2016 RPE_RS06210 949f57c6dd0f396f49ae1c108687156e 99 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 72 7.3E-17 T 23-04-2016 IPR007138 Antibiotic biosynthesis monooxygenase domain RPE_RS06210 949f57c6dd0f396f49ae1c108687156e 99 Gene3D G3DSA:3.30.70.900 1 87 2.8E-26 T 23-04-2016 RPE_RS11200 3e8c6ac5f13dd87c0f4d9902306a4a95 227 SUPERFAMILY SSF55469 23 218 3.93E-43 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 RPE_RS11200 3e8c6ac5f13dd87c0f4d9902306a4a95 227 Gene3D G3DSA:3.40.109.10 24 220 1.6E-40 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 RPE_RS11200 3e8c6ac5f13dd87c0f4d9902306a4a95 227 Pfam PF00881 Nitroreductase family 33 199 2.9E-23 T 23-04-2016 IPR029479 Nitroreductase RPE_RS11200 3e8c6ac5f13dd87c0f4d9902306a4a95 227 TIGRFAM TIGR02476 BluB: 5,6-dimethylbenzimidazole synthase 21 219 2.3E-80 T 23-04-2016 IPR012825 5,6-dimethylbenzimidazole synthase BluB KEGG: 00740+1.13.11.79|MetaCyc: PWY-5508|MetaCyc: PWY-5523 RPE_RS11200 3e8c6ac5f13dd87c0f4d9902306a4a95 227 PANTHER PTHR23026 4 211 2.1E-26 T 23-04-2016 RPE_RS06655 f227fb6d79c168395ff5608590c33c16 343 SUPERFAMILY SSF159245 27 318 3.66E-61 T 23-04-2016 RPE_RS00410 8a0f5e4f87c1088979f16f706a1f7ece 420 Gene3D G3DSA:1.10.630.10 4 402 6.4E-82 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RPE_RS00410 8a0f5e4f87c1088979f16f706a1f7ece 420 Pfam PF00067 Cytochrome P450 207 362 1.9E-14 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RPE_RS00410 8a0f5e4f87c1088979f16f706a1f7ece 420 PRINTS PR00359 B-class P450 signature 295 322 5.6E-34 T 23-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RPE_RS00410 8a0f5e4f87c1088979f16f706a1f7ece 420 PRINTS PR00359 B-class P450 signature 344 353 5.6E-34 T 23-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RPE_RS00410 8a0f5e4f87c1088979f16f706a1f7ece 420 PRINTS PR00359 B-class P450 signature 278 289 5.6E-34 T 23-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RPE_RS00410 8a0f5e4f87c1088979f16f706a1f7ece 420 PRINTS PR00359 B-class P450 signature 353 364 5.6E-34 T 23-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RPE_RS00410 8a0f5e4f87c1088979f16f706a1f7ece 420 PRINTS PR00359 B-class P450 signature 138 154 5.6E-34 T 23-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RPE_RS00410 8a0f5e4f87c1088979f16f706a1f7ece 420 PRINTS PR00359 B-class P450 signature 92 103 5.6E-34 T 23-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RPE_RS00410 8a0f5e4f87c1088979f16f706a1f7ece 420 PRINTS PR00359 B-class P450 signature 155 170 5.6E-34 T 23-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RPE_RS00410 8a0f5e4f87c1088979f16f706a1f7ece 420 PRINTS PR00359 B-class P450 signature 323 338 5.6E-34 T 23-04-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RPE_RS00410 8a0f5e4f87c1088979f16f706a1f7ece 420 SUPERFAMILY SSF48264 5 403 3.8E-62 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RPE_RS00410 8a0f5e4f87c1088979f16f706a1f7ece 420 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 346 355 - T 23-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 RPE_RS00410 8a0f5e4f87c1088979f16f706a1f7ece 420 PANTHER PTHR11712 4 403 2.6E-53 T 23-04-2016 RPE_RS16025 5898d0afe9d21fa2c0ba381b2c7dfe7b 304 Pfam PF01758 Sodium Bile acid symporter family 22 206 5.2E-33 T 23-04-2016 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 RPE_RS16025 5898d0afe9d21fa2c0ba381b2c7dfe7b 304 PANTHER PTHR10361 23 293 9.0E-57 T 23-04-2016 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 RPE_RS20670 75297075ff87929853de3ba7b965fe46 97 PANTHER PTHR33713:SF4 17 84 1.4E-16 T 23-04-2016 RPE_RS20670 75297075ff87929853de3ba7b965fe46 97 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 17 63 1.6E-15 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RPE_RS20670 75297075ff87929853de3ba7b965fe46 97 SUPERFAMILY SSF143120 16 62 4.84E-11 T 23-04-2016 RPE_RS20670 75297075ff87929853de3ba7b965fe46 97 PANTHER PTHR33713 17 84 1.4E-16 T 23-04-2016 RPE_RS20670 75297075ff87929853de3ba7b965fe46 97 Gene3D G3DSA:3.40.1620.10 16 62 3.3E-23 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RPE_RS20670 75297075ff87929853de3ba7b965fe46 97 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 17 67 4.8E-14 T 23-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RPE_RS13705 f67bcaed67e366c9eae280e957399152 500 Gene3D G3DSA:1.10.3720.10 284 495 3.4E-41 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS13705 f67bcaed67e366c9eae280e957399152 500 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 306 485 3.0E-21 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS13705 f67bcaed67e366c9eae280e957399152 500 PANTHER PTHR30085:SF3 198 500 1.1E-140 T 23-04-2016 RPE_RS13705 f67bcaed67e366c9eae280e957399152 500 PANTHER PTHR30085 198 500 1.1E-140 T 23-04-2016 RPE_RS13705 f67bcaed67e366c9eae280e957399152 500 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 287 384 2.6E-20 T 23-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 RPE_RS13705 f67bcaed67e366c9eae280e957399152 500 SUPERFAMILY SSF161098 285 475 8.63E-38 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS02020 8c1ae6e3e18581e1b62a9885130b0b41 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 23-04-2016 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 RPE_RS02020 8c1ae6e3e18581e1b62a9885130b0b41 112 PANTHER PTHR30115:SF15 1 112 2.6E-79 T 23-04-2016 RPE_RS02020 8c1ae6e3e18581e1b62a9885130b0b41 112 Gene3D G3DSA:3.30.70.120 1 112 3.2E-47 T 23-04-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RPE_RS02020 8c1ae6e3e18581e1b62a9885130b0b41 112 PRINTS PR00340 P-II protein signature 83 103 1.5E-39 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RPE_RS02020 8c1ae6e3e18581e1b62a9885130b0b41 112 PRINTS PR00340 P-II protein signature 52 75 1.5E-39 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RPE_RS02020 8c1ae6e3e18581e1b62a9885130b0b41 112 PRINTS PR00340 P-II protein signature 23 41 1.5E-39 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RPE_RS02020 8c1ae6e3e18581e1b62a9885130b0b41 112 PRINTS PR00340 P-II protein signature 2 17 1.5E-39 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RPE_RS02020 8c1ae6e3e18581e1b62a9885130b0b41 112 PANTHER PTHR30115 1 112 2.6E-79 T 23-04-2016 RPE_RS02020 8c1ae6e3e18581e1b62a9885130b0b41 112 SUPERFAMILY SSF54913 1 112 7.94E-43 T 23-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta RPE_RS02020 8c1ae6e3e18581e1b62a9885130b0b41 112 PIRSF PIRSF039144 1 112 1.9E-51 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RPE_RS02020 8c1ae6e3e18581e1b62a9885130b0b41 112 SMART SM00938 4 105 2.6E-62 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RPE_RS02020 8c1ae6e3e18581e1b62a9885130b0b41 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 9.0E-42 T 23-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RPE_RS02020 8c1ae6e3e18581e1b62a9885130b0b41 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 23-04-2016 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 RPE_RS12265 43e6875d0b5eff5933a1aff5250cf671 469 Gene3D G3DSA:1.10.287.510 167 226 5.3E-8 T 23-04-2016 RPE_RS12265 43e6875d0b5eff5933a1aff5250cf671 469 Gene3D G3DSA:1.10.287.510 92 134 5.3E-8 T 23-04-2016 RPE_RS06825 9e5423bbb5dd85570c96405318f85557 155 TIGRFAM TIGR03054 photo_alph_chp1: putative photosynthetic complex assembly protein 15 147 2.0E-40 T 23-04-2016 IPR017495 Putative photosynthetic complex assembly protein RPE_RS05670 b4ca224f963cd17e416ef43448e01007 100 Gene3D G3DSA:2.40.10.220 1 82 8.6E-5 T 23-04-2016 RPE_RS05670 b4ca224f963cd17e416ef43448e01007 100 SUPERFAMILY SSF141371 1 83 3.14E-10 T 23-04-2016 RPE_RS05670 b4ca224f963cd17e416ef43448e01007 100 Pfam PF07238 PilZ domain 3 95 5.1E-14 T 23-04-2016 IPR009875 PilZ domain GO:0035438 RPE_RS11235 2a622954de01560118652a003faff245 323 Hamap MF_00024 Cobalamin biosynthesis protein CbiB [cbiB]. 1 323 100.997 T 23-04-2016 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 UniPathway: UPA00148 RPE_RS11235 2a622954de01560118652a003faff245 323 Pfam PF03186 CobD/Cbib protein 12 305 6.7E-99 T 23-04-2016 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 UniPathway: UPA00148 RPE_RS11235 2a622954de01560118652a003faff245 323 TIGRFAM TIGR00380 cobD: cobalamin biosynthesis protein CobD 9 276 3.4E-69 T 23-04-2016 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 UniPathway: UPA00148 RPE_RS11235 2a622954de01560118652a003faff245 323 PANTHER PTHR34308 1 323 1.5E-93 T 23-04-2016 RPE_RS11235 2a622954de01560118652a003faff245 323 PANTHER PTHR34308:SF1 1 323 1.5E-93 T 23-04-2016 RPE_RS24345 4be824c7877d64432839a107e09fdeb0 449 Gene3D G3DSA:2.120.10.30 20 26 8.8E-65 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like RPE_RS24345 4be824c7877d64432839a107e09fdeb0 449 Gene3D G3DSA:2.120.10.30 68 445 8.8E-65 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like RPE_RS24345 4be824c7877d64432839a107e09fdeb0 449 SUPERFAMILY SSF50952 70 101 7.19E-38 T 23-04-2016 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 RPE_RS24345 4be824c7877d64432839a107e09fdeb0 449 SUPERFAMILY SSF50952 131 443 7.19E-38 T 23-04-2016 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 RPE_RS24345 4be824c7877d64432839a107e09fdeb0 449 Pfam PF07995 Glucose / Sorbosone dehydrogenase 174 368 2.0E-11 T 23-04-2016 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 RPE_RS24345 4be824c7877d64432839a107e09fdeb0 449 PANTHER PTHR19328:SF26 48 104 5.2E-160 T 23-04-2016 RPE_RS24345 4be824c7877d64432839a107e09fdeb0 449 PANTHER PTHR19328:SF26 135 443 5.2E-160 T 23-04-2016 RPE_RS24345 4be824c7877d64432839a107e09fdeb0 449 PANTHER PTHR19328 48 104 5.2E-160 T 23-04-2016 RPE_RS24345 4be824c7877d64432839a107e09fdeb0 449 PANTHER PTHR19328 135 443 5.2E-160 T 23-04-2016 RPE_RS18670 ce6c7582df090645406216a684663ae7 99 SUPERFAMILY SSF54909 2 92 2.44E-25 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RPE_RS18670 ce6c7582df090645406216a684663ae7 99 Gene3D G3DSA:3.30.70.900 2 94 1.8E-30 T 23-04-2016 RPE_RS18670 ce6c7582df090645406216a684663ae7 99 PANTHER PTHR33336:SF5 2 93 6.6E-25 T 23-04-2016 RPE_RS18670 ce6c7582df090645406216a684663ae7 99 Pfam PF03992 Antibiotic biosynthesis monooxygenase 2 74 2.3E-18 T 23-04-2016 IPR007138 Antibiotic biosynthesis monooxygenase domain RPE_RS18670 ce6c7582df090645406216a684663ae7 99 PANTHER PTHR33336 2 93 6.6E-25 T 23-04-2016 RPE_RS03035 d0969a431e704d0445a5fc9cdeeb397a 394 PANTHER PTHR30548:SF5 1 394 1.6E-34 T 23-04-2016 RPE_RS03035 d0969a431e704d0445a5fc9cdeeb397a 394 PANTHER PTHR30548 1 394 1.6E-34 T 23-04-2016 RPE_RS03035 d0969a431e704d0445a5fc9cdeeb397a 394 TIGRFAM TIGR02263 benz_CoA_red_C: benzoyl-CoA reductase, subunit C 9 388 5.4E-240 T 23-04-2016 IPR011958 Benzoyl-CoA reductase, subunit C KEGG: 00362+1.3.7.8 RPE_RS03035 d0969a431e704d0445a5fc9cdeeb397a 394 Pfam PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component 46 385 8.7E-46 T 23-04-2016 IPR010327 FldB/FldC dehydratase alpha/beta subunit RPE_RS04615 648a921d8baea84dcddf0ede272ec5fe 493 Pfam PF00563 EAL domain 204 437 1.5E-42 T 23-04-2016 IPR001633 EAL domain RPE_RS04615 648a921d8baea84dcddf0ede272ec5fe 493 Gene3D G3DSA:3.20.20.450 203 440 1.6E-34 T 23-04-2016 IPR001633 EAL domain RPE_RS04615 648a921d8baea84dcddf0ede272ec5fe 493 PANTHER PTHR33121:SF10 205 473 3.7E-46 T 23-04-2016 RPE_RS04615 648a921d8baea84dcddf0ede272ec5fe 493 SUPERFAMILY SSF141868 203 441 9.81E-40 T 23-04-2016 IPR001633 EAL domain RPE_RS04615 648a921d8baea84dcddf0ede272ec5fe 493 PANTHER PTHR33121 205 473 3.7E-46 T 23-04-2016 RPE_RS04615 648a921d8baea84dcddf0ede272ec5fe 493 SMART SM00052 197 444 3.2E-10 T 23-04-2016 IPR001633 EAL domain RPE_RS15265 2928b23274be2115277ebe4ee9f7c108 255 SUPERFAMILY SSF88713 3 252 1.41E-96 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RPE_RS15265 2928b23274be2115277ebe4ee9f7c108 255 Pfam PF03746 LamB/YcsF family 4 242 1.6E-98 T 23-04-2016 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF RPE_RS15265 2928b23274be2115277ebe4ee9f7c108 255 PANTHER PTHR30292:SF0 1 254 1.6E-125 T 23-04-2016 RPE_RS15265 2928b23274be2115277ebe4ee9f7c108 255 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 2 247 44.609 T 23-04-2016 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF RPE_RS15265 2928b23274be2115277ebe4ee9f7c108 255 PANTHER PTHR30292 1 254 1.6E-125 T 23-04-2016 RPE_RS09095 c46002c36952062a6bfc6ef886a1a8fa 528 PANTHER PTHR11918:SF63 1 516 2.0E-235 T 23-04-2016 RPE_RS09095 c46002c36952062a6bfc6ef886a1a8fa 528 Gene3D G3DSA:3.80.30.20 180 380 2.0E-32 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RPE_RS09095 c46002c36952062a6bfc6ef886a1a8fa 528 SUPERFAMILY SSF102114 177 388 1.96E-33 T 23-04-2016 RPE_RS09095 c46002c36952062a6bfc6ef886a1a8fa 528 PANTHER PTHR11918 1 516 2.0E-235 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein RPE_RS09095 c46002c36952062a6bfc6ef886a1a8fa 528 SMART SM00729 179 398 8.4E-14 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RPE_RS09095 c46002c36952062a6bfc6ef886a1a8fa 528 Pfam PF13282 Domain of unknown function (DUF4070) 371 508 5.2E-31 T 23-04-2016 IPR025274 Domain of unknown function DUF4070 RPE_RS09095 c46002c36952062a6bfc6ef886a1a8fa 528 Pfam PF04055 Radical SAM superfamily 185 341 2.7E-13 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RPE_RS09095 c46002c36952062a6bfc6ef886a1a8fa 528 Pfam PF02310 B12 binding domain 36 137 1.3E-7 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RPE_RS20885 7c761a949c787b79636fa28cf276b935 116 PANTHER PTHR38482 1 116 1.0E-47 T 23-04-2016 RPE_RS20885 7c761a949c787b79636fa28cf276b935 116 SUPERFAMILY SSF103481 13 113 5.89E-5 T 23-04-2016 RPE_RS20885 7c761a949c787b79636fa28cf276b935 116 Pfam PF04342 Putative member of DMT superfamily (DUF486) 9 112 1.5E-43 T 23-04-2016 IPR007437 Putative member of DMT superfamily RPE_RS20885 7c761a949c787b79636fa28cf276b935 116 PIRSF PIRSF021239 3 115 9.1E-49 T 23-04-2016 IPR007437 Putative member of DMT superfamily RPE_RS24340 a0fbee9e9fede21d4f2dfbdcb936c42f 476 Pfam PF01554 MatE 282 425 1.6E-17 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RPE_RS24340 a0fbee9e9fede21d4f2dfbdcb936c42f 476 Pfam PF01554 MatE 58 203 1.7E-20 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RPE_RS24340 a0fbee9e9fede21d4f2dfbdcb936c42f 476 PANTHER PTHR11206 29 452 1.3E-111 T 23-04-2016 RPE_RS24340 a0fbee9e9fede21d4f2dfbdcb936c42f 476 PIRSF PIRSF006603 21 465 2.2E-72 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RPE_RS24340 a0fbee9e9fede21d4f2dfbdcb936c42f 476 PANTHER PTHR11206:SF132 29 452 1.3E-111 T 23-04-2016 RPE_RS07005 1e8459165ea2a1115af94ac2345cb4e4 449 Pfam PF13406 Transglycosylase SLT domain 46 338 5.7E-91 T 23-04-2016 IPR031304 Transglycosylase SLT domain 2 RPE_RS07005 1e8459165ea2a1115af94ac2345cb4e4 449 Pfam PF01471 Putative peptidoglycan binding domain 360 414 2.0E-10 T 23-04-2016 IPR002477 Peptidoglycan binding-like RPE_RS07005 1e8459165ea2a1115af94ac2345cb4e4 449 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 46 343 5.1E-112 T 23-04-2016 IPR011970 Lytic murein transglycosylase RPE_RS07005 1e8459165ea2a1115af94ac2345cb4e4 449 Gene3D G3DSA:1.10.530.10 228 345 3.4E-44 T 23-04-2016 RPE_RS07005 1e8459165ea2a1115af94ac2345cb4e4 449 Gene3D G3DSA:1.10.530.10 96 147 3.4E-44 T 23-04-2016 RPE_RS07005 1e8459165ea2a1115af94ac2345cb4e4 449 Gene3D G3DSA:1.10.101.10 361 415 3.9E-10 T 23-04-2016 IPR002477 Peptidoglycan binding-like RPE_RS07005 1e8459165ea2a1115af94ac2345cb4e4 449 SUPERFAMILY SSF53955 41 345 1.38E-88 T 23-04-2016 IPR023346 Lysozyme-like domain RPE_RS07005 1e8459165ea2a1115af94ac2345cb4e4 449 SUPERFAMILY SSF47090 356 415 4.19E-13 T 23-04-2016 IPR002477 Peptidoglycan binding-like RPE_RS07005 1e8459165ea2a1115af94ac2345cb4e4 449 PANTHER PTHR30163 12 428 1.8E-167 T 23-04-2016 IPR011757 Lytic transglycosylase MltB RPE_RS07005 1e8459165ea2a1115af94ac2345cb4e4 449 PANTHER PTHR30163:SF2 12 428 1.8E-167 T 23-04-2016 RPE_RS07165 87168ae09fd09fcb70de425c27fc9f2f 370 PANTHER PTHR11825 36 368 1.2E-143 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RPE_RS07165 87168ae09fd09fcb70de425c27fc9f2f 370 Gene3D G3DSA:3.20.10.10 188 356 4.0E-62 T 23-04-2016 RPE_RS07165 87168ae09fd09fcb70de425c27fc9f2f 370 SUPERFAMILY SSF56752 15 366 9.03E-110 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RPE_RS07165 87168ae09fd09fcb70de425c27fc9f2f 370 TIGRFAM TIGR01123 ilvE_II: branched-chain amino acid aminotransferase 58 369 7.8E-122 T 23-04-2016 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|Reactome: REACT_13 RPE_RS07165 87168ae09fd09fcb70de425c27fc9f2f 370 Pfam PF01063 Amino-transferase class IV 84 325 9.4E-33 T 23-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RPE_RS07165 87168ae09fd09fcb70de425c27fc9f2f 370 PANTHER PTHR11825:SF2 36 368 1.2E-143 T 23-04-2016 RPE_RS07165 87168ae09fd09fcb70de425c27fc9f2f 370 PIRSF PIRSF006468 15 370 2.0E-124 T 23-04-2016 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|Reactome: REACT_13 RPE_RS07165 87168ae09fd09fcb70de425c27fc9f2f 370 Gene3D G3DSA:3.30.470.10 30 187 1.1E-67 T 23-04-2016 RPE_RS07165 87168ae09fd09fcb70de425c27fc9f2f 370 ProSitePatterns PS00770 Aminotransferases class-IV signature. 246 275 - T 23-04-2016 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: REACT_13 RPE_RS05525 ca3744b59a1a30e2f34248ffcb2ead94 484 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 40 484 6.3E-117 T 23-04-2016 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase RPE_RS05525 ca3744b59a1a30e2f34248ffcb2ead94 484 Pfam PF02397 Bacterial sugar transferase 294 477 4.4E-57 T 23-04-2016 IPR003362 Bacterial sugar transferase RPE_RS05525 ca3744b59a1a30e2f34248ffcb2ead94 484 PANTHER PTHR30576 12 484 2.7E-125 T 23-04-2016 RPE_RS05525 ca3744b59a1a30e2f34248ffcb2ead94 484 Pfam PF13727 CoA-binding domain 88 260 5.6E-19 T 23-04-2016 RPE_RS05525 ca3744b59a1a30e2f34248ffcb2ead94 484 PANTHER PTHR30576:SF0 12 484 2.7E-125 T 23-04-2016 RPE_RS05525 ca3744b59a1a30e2f34248ffcb2ead94 484 TIGRFAM TIGR03023 WcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase 40 484 3.5E-128 T 23-04-2016 IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ MetaCyc: PWY-6655|MetaCyc: PWY-6658 RPE_RS22470 45cba42d80e40b442d6d65e94340bbe4 895 SUPERFAMILY SSF64518 571 895 3.27E-29 T 23-04-2016 RPE_RS22470 45cba42d80e40b442d6d65e94340bbe4 895 Pfam PF00669 Bacterial flagellin N-terminal helical region 6 118 1.3E-8 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RPE_RS22470 45cba42d80e40b442d6d65e94340bbe4 895 Pfam PF07482 Domain of Unknown Function (DUF1522) 496 602 4.2E-39 T 23-04-2016 IPR011087 Domain of unknown function DUF1522 RPE_RS22470 45cba42d80e40b442d6d65e94340bbe4 895 Pfam PF07482 Domain of Unknown Function (DUF1522) 347 459 1.5E-37 T 23-04-2016 IPR011087 Domain of unknown function DUF1522 RPE_RS22470 45cba42d80e40b442d6d65e94340bbe4 895 SUPERFAMILY SSF64518 1 265 5.49E-8 T 23-04-2016 RPE_RS22470 45cba42d80e40b442d6d65e94340bbe4 895 SUPERFAMILY SSF64518 390 412 5.49E-8 T 23-04-2016 RPE_RS22470 45cba42d80e40b442d6d65e94340bbe4 895 Gene3D G3DSA:1.20.1330.10 723 834 2.0E-8 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RPE_RS20925 7ad12d1e3d5461a45ea15817201d55d1 129 PANTHER PTHR10891:SF598 1 116 2.4E-26 T 23-04-2016 RPE_RS20925 7ad12d1e3d5461a45ea15817201d55d1 129 SUPERFAMILY SSF47473 26 117 1.23E-13 T 23-04-2016 IPR011992 EF-hand domain pair RPE_RS20925 7ad12d1e3d5461a45ea15817201d55d1 129 Pfam PF13202 EF hand 49 68 0.0088 T 23-04-2016 IPR002048 EF-hand domain GO:0005509 RPE_RS20925 7ad12d1e3d5461a45ea15817201d55d1 129 Pfam PF13833 EF-hand domain pair 78 99 0.013 T 23-04-2016 IPR002048 EF-hand domain GO:0005509 RPE_RS20925 7ad12d1e3d5461a45ea15817201d55d1 129 Gene3D G3DSA:1.10.238.10 59 117 2.3E-7 T 23-04-2016 IPR011992 EF-hand domain pair RPE_RS20925 7ad12d1e3d5461a45ea15817201d55d1 129 PANTHER PTHR10891 1 116 2.4E-26 T 23-04-2016 RPE_RS20925 7ad12d1e3d5461a45ea15817201d55d1 129 ProSitePatterns PS00018 EF-hand calcium-binding domain. 55 67 - T 23-04-2016 IPR018247 EF-Hand 1, calcium-binding site RPE_RS20925 7ad12d1e3d5461a45ea15817201d55d1 129 Gene3D G3DSA:1.10.238.10 24 58 1.9E-4 T 23-04-2016 IPR011992 EF-hand domain pair RPE_RS00415 5f0b222091f16aeac57ec88091832d99 203 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 63 160 3.7E-12 T 23-04-2016 IPR006342 Methyltransferase FkbM KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- RPE_RS00415 5f0b222091f16aeac57ec88091832d99 203 Gene3D G3DSA:3.40.50.150 4 151 8.9E-16 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS00415 5f0b222091f16aeac57ec88091832d99 203 SUPERFAMILY SSF53335 4 181 3.49E-22 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS00415 5f0b222091f16aeac57ec88091832d99 203 Pfam PF05050 Methyltransferase FkbM domain 8 160 1.2E-7 T 23-04-2016 IPR006342 Methyltransferase FkbM KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- RPE_RS01355 ba9c1f6e162107477d198eaf5ec6d315 160 Gene3D G3DSA:3.40.1280.10 1 159 2.4E-54 T 23-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RPE_RS01355 ba9c1f6e162107477d198eaf5ec6d315 160 PANTHER PTHR33603:SF1 1 159 6.3E-47 T 23-04-2016 RPE_RS01355 ba9c1f6e162107477d198eaf5ec6d315 160 Pfam PF02590 Predicted SPOUT methyltransferase 1 158 3.2E-45 T 23-04-2016 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RPE_RS01355 ba9c1f6e162107477d198eaf5ec6d315 160 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 159 27.18 T 23-04-2016 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RPE_RS01355 ba9c1f6e162107477d198eaf5ec6d315 160 PIRSF PIRSF004505 1 159 2.3E-45 T 23-04-2016 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 RPE_RS01355 ba9c1f6e162107477d198eaf5ec6d315 160 PANTHER PTHR33603 1 159 6.3E-47 T 23-04-2016 RPE_RS01355 ba9c1f6e162107477d198eaf5ec6d315 160 SUPERFAMILY SSF75217 1 157 1.57E-45 T 23-04-2016 IPR029028 Alpha/beta knot methyltransferases RPE_RS04185 ce694bb5a088568cfb954d82d5939c14 793 TIGRFAM TIGR03509 OMP_MtrB_PioB: decaheme-associated outer membrane protein, MtrB/PioB family 75 793 1.8E-171 T 23-04-2016 IPR020016 Decahaem-associated outer membrane protein, MtrB/PioB RPE_RS04185 ce694bb5a088568cfb954d82d5939c14 793 Gene3D G3DSA:2.40.170.20 588 723 2.4E-5 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RPE_RS04185 ce694bb5a088568cfb954d82d5939c14 793 Gene3D G3DSA:2.40.170.20 189 323 5.1E-4 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RPE_RS04185 ce694bb5a088568cfb954d82d5939c14 793 SUPERFAMILY SSF56935 386 722 2.06E-6 T 23-04-2016 RPE_RS04185 ce694bb5a088568cfb954d82d5939c14 793 SUPERFAMILY SSF56935 314 357 2.06E-6 T 23-04-2016 RPE_RS04185 ce694bb5a088568cfb954d82d5939c14 793 Pfam PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB 78 793 3.7E-172 T 23-04-2016 IPR020016 Decahaem-associated outer membrane protein, MtrB/PioB RPE_RS14675 78be6fc6d1f7ad6a7f54ae0df936c95b 86 Pfam PF07238 PilZ domain 11 83 7.3E-7 T 23-04-2016 IPR009875 PilZ domain GO:0035438 RPE_RS14675 78be6fc6d1f7ad6a7f54ae0df936c95b 86 SUPERFAMILY SSF141371 8 84 1.04E-9 T 23-04-2016 RPE_RS10040 115719a77f9d08dc44ac61ecc87bc795 169 Gene3D G3DSA:3.40.630.30 5 163 2.3E-43 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS10040 115719a77f9d08dc44ac61ecc87bc795 169 Pfam PF13673 Acetyltransferase (GNAT) domain 36 144 8.5E-19 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RPE_RS10040 115719a77f9d08dc44ac61ecc87bc795 169 SUPERFAMILY SSF55729 5 160 2.48E-35 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS03425 c7ae4ba605b54fd071bbc4cbc4d91034 156 PANTHER PTHR11527 1 145 8.7E-55 T 23-04-2016 IPR031107 Small heat shock protein HSP20 RPE_RS03425 c7ae4ba605b54fd071bbc4cbc4d91034 156 PANTHER PTHR11527:SF145 1 145 8.7E-55 T 23-04-2016 RPE_RS03425 c7ae4ba605b54fd071bbc4cbc4d91034 156 Pfam PF00011 Hsp20/alpha crystallin family 42 138 3.2E-17 T 23-04-2016 IPR002068 Alpha crystallin/Hsp20 domain RPE_RS03425 c7ae4ba605b54fd071bbc4cbc4d91034 156 SUPERFAMILY SSF49764 32 137 2.02E-19 T 23-04-2016 IPR008978 HSP20-like chaperone RPE_RS03425 c7ae4ba605b54fd071bbc4cbc4d91034 156 Gene3D G3DSA:2.60.40.790 4 138 3.0E-15 T 23-04-2016 IPR008978 HSP20-like chaperone RPE_RS12760 e0f815c69aa473ec209d3e9c9c62c183 439 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 224 2.4E-97 T 23-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RPE_RS12760 e0f815c69aa473ec209d3e9c9c62c183 439 SUPERFAMILY SSF55681 279 350 4.15E-87 T 23-04-2016 RPE_RS12760 e0f815c69aa473ec209d3e9c9c62c183 439 SUPERFAMILY SSF55681 10 238 4.15E-87 T 23-04-2016 RPE_RS12760 e0f815c69aa473ec209d3e9c9c62c183 439 Pfam PF03129 Anticodon binding domain 348 437 3.4E-19 T 23-04-2016 IPR004154 Anticodon-binding RPE_RS12760 e0f815c69aa473ec209d3e9c9c62c183 439 PANTHER PTHR11451 241 439 6.9E-131 T 23-04-2016 RPE_RS12760 e0f815c69aa473ec209d3e9c9c62c183 439 PANTHER PTHR11451 4 216 6.9E-131 T 23-04-2016 RPE_RS12760 e0f815c69aa473ec209d3e9c9c62c183 439 PANTHER PTHR11451:SF3 241 439 6.9E-131 T 23-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RPE_RS12760 e0f815c69aa473ec209d3e9c9c62c183 439 PANTHER PTHR11451:SF3 4 216 6.9E-131 T 23-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RPE_RS12760 e0f815c69aa473ec209d3e9c9c62c183 439 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 329 2.9E-34 T 23-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS12760 e0f815c69aa473ec209d3e9c9c62c183 439 Gene3D G3DSA:3.30.930.10 263 340 4.5E-91 T 23-04-2016 RPE_RS12760 e0f815c69aa473ec209d3e9c9c62c183 439 Gene3D G3DSA:3.30.930.10 6 204 4.5E-91 T 23-04-2016 RPE_RS12760 e0f815c69aa473ec209d3e9c9c62c183 439 Gene3D G3DSA:3.40.50.800 342 438 1.6E-25 T 23-04-2016 IPR004154 Anticodon-binding RPE_RS12760 e0f815c69aa473ec209d3e9c9c62c183 439 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 6.8E-14 T 23-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RPE_RS12760 e0f815c69aa473ec209d3e9c9c62c183 439 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 6.8E-14 T 23-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RPE_RS12760 e0f815c69aa473ec209d3e9c9c62c183 439 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 6.8E-14 T 23-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RPE_RS12760 e0f815c69aa473ec209d3e9c9c62c183 439 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 6.8E-14 T 23-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RPE_RS12760 e0f815c69aa473ec209d3e9c9c62c183 439 SUPERFAMILY SSF52954 335 438 1.81E-28 T 23-04-2016 IPR004154 Anticodon-binding RPE_RS12760 e0f815c69aa473ec209d3e9c9c62c183 439 Hamap MF_01570 Proline--tRNA ligase [proS]. 1 439 62.292 T 23-04-2016 IPR023716 Proline-tRNA ligase, class IIa, type 2 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RPE_RS01230 9ced2332a0fa415c667d42c4d9b1d4a5 333 Gene3D G3DSA:3.40.50.720 6 115 9.1E-34 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS01230 9ced2332a0fa415c667d42c4d9b1d4a5 333 PANTHER PTHR10996:SF118 1 333 2.4E-122 T 23-04-2016 RPE_RS01230 9ced2332a0fa415c667d42c4d9b1d4a5 333 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 10 328 4.4E-31 T 23-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 RPE_RS01230 9ced2332a0fa415c667d42c4d9b1d4a5 333 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 155 182 - T 23-04-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 RPE_RS01230 9ced2332a0fa415c667d42c4d9b1d4a5 333 SUPERFAMILY SSF51735 106 298 3.07E-55 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS01230 9ced2332a0fa415c667d42c4d9b1d4a5 333 Gene3D G3DSA:3.40.50.720 116 298 3.1E-59 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS01230 9ced2332a0fa415c667d42c4d9b1d4a5 333 PANTHER PTHR10996 1 333 2.4E-122 T 23-04-2016 RPE_RS01230 9ced2332a0fa415c667d42c4d9b1d4a5 333 SUPERFAMILY SSF52283 6 135 6.99E-34 T 23-04-2016 RPE_RS01230 9ced2332a0fa415c667d42c4d9b1d4a5 333 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 114 297 1.4E-53 T 23-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RPE_RS09090 c221d4427e0741aae453f85efa7bb366 462 Pfam PF06751 Ethanolamine ammonia lyase large subunit (EutB) 12 446 4.2E-213 T 23-04-2016 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7|UniPathway: UPA00560 RPE_RS09090 c221d4427e0741aae453f85efa7bb366 462 PANTHER PTHR39329 1 460 2.3E-289 T 23-04-2016 RPE_RS09090 c221d4427e0741aae453f85efa7bb366 462 PANTHER PTHR39329:SF1 1 460 2.3E-289 T 23-04-2016 RPE_RS09090 c221d4427e0741aae453f85efa7bb366 462 Gene3D G3DSA:1.10.220.70 55 141 1.5E-39 T 23-04-2016 RPE_RS09090 c221d4427e0741aae453f85efa7bb366 462 Gene3D G3DSA:3.20.20.70 143 445 1.9E-155 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS09090 c221d4427e0741aae453f85efa7bb366 462 PIRSF PIRSF018788 1 460 4.8E-233 T 23-04-2016 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7|UniPathway: UPA00560 RPE_RS09090 c221d4427e0741aae453f85efa7bb366 462 Gene3D G3DSA:2.30.170.30 1 54 3.8E-24 T 23-04-2016 RPE_RS15705 a3fc0b9a90530e915f17ae8cf5ffb79c 324 Pfam PF13519 von Willebrand factor type A domain 38 153 1.2E-8 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS15705 a3fc0b9a90530e915f17ae8cf5ffb79c 324 SUPERFAMILY SSF53300 33 182 4.9E-12 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS15705 a3fc0b9a90530e915f17ae8cf5ffb79c 324 SMART SM00327 35 221 3.7E-11 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS19765 6f881d04492258d6ae2420e951ba5455 323 PRINTS PR00111 Alpha/beta hydrolase fold signature 134 147 1.9E-13 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS19765 6f881d04492258d6ae2420e951ba5455 323 PRINTS PR00111 Alpha/beta hydrolase fold signature 148 161 1.9E-13 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS19765 6f881d04492258d6ae2420e951ba5455 323 PRINTS PR00111 Alpha/beta hydrolase fold signature 260 274 1.9E-13 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS19765 6f881d04492258d6ae2420e951ba5455 323 PRINTS PR00111 Alpha/beta hydrolase fold signature 89 104 1.9E-13 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS19765 6f881d04492258d6ae2420e951ba5455 323 PRINTS PR00412 Epoxide hydrolase signature 134 147 1.8E-5 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RPE_RS19765 6f881d04492258d6ae2420e951ba5455 323 PRINTS PR00412 Epoxide hydrolase signature 148 161 1.8E-5 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RPE_RS19765 6f881d04492258d6ae2420e951ba5455 323 PRINTS PR00412 Epoxide hydrolase signature 258 274 1.8E-5 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RPE_RS19765 6f881d04492258d6ae2420e951ba5455 323 PRINTS PR00412 Epoxide hydrolase signature 89 104 1.8E-5 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RPE_RS19765 6f881d04492258d6ae2420e951ba5455 323 PANTHER PTHR10992 39 317 2.6E-44 T 23-04-2016 RPE_RS19765 6f881d04492258d6ae2420e951ba5455 323 Gene3D G3DSA:3.40.50.1820 34 313 3.9E-56 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS19765 6f881d04492258d6ae2420e951ba5455 323 Pfam PF12697 Alpha/beta hydrolase family 65 309 5.9E-28 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS19765 6f881d04492258d6ae2420e951ba5455 323 SUPERFAMILY SSF53474 32 312 9.04E-57 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS06065 132e0afd5e68ab8a0c0e646958fc47de 213 PANTHER PTHR35147 10 213 1.1E-76 T 23-04-2016 RPE_RS06065 132e0afd5e68ab8a0c0e646958fc47de 213 Pfam PF03975 CheD chemotactic sensory transduction 79 179 5.5E-28 T 23-04-2016 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 RPE_RS06065 132e0afd5e68ab8a0c0e646958fc47de 213 Hamap MF_01440 Chemoreceptor glutamine deamidase CheD [cheD]. 31 185 27.453 T 23-04-2016 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 RPE_RS06065 132e0afd5e68ab8a0c0e646958fc47de 213 PANTHER PTHR35147:SF2 10 213 1.1E-76 T 23-04-2016 RPE_RS06065 132e0afd5e68ab8a0c0e646958fc47de 213 SUPERFAMILY SSF64438 36 185 1.37E-47 T 23-04-2016 IPR011324 Cytotoxic necrotizing factor-like, catalytic RPE_RS15740 af603cc60d3127929cdb6a05f81cf8de 200 SUPERFAMILY SSF46626 14 167 2.82E-24 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS15740 af603cc60d3127929cdb6a05f81cf8de 200 Gene3D G3DSA:1.10.760.10 57 173 9.0E-24 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS15740 af603cc60d3127929cdb6a05f81cf8de 200 TIGRFAM TIGR03872 cytochrome_MoxG: cytochrome c(L), periplasmic 29 161 2.4E-62 T 23-04-2016 IPR009153 Cytochrome cL GO:0005506|GO:0009055|GO:0020037|GO:0042597 RPE_RS15740 af603cc60d3127929cdb6a05f81cf8de 200 PIRSF PIRSF000008 3 191 1.2E-72 T 23-04-2016 IPR009153 Cytochrome cL GO:0005506|GO:0009055|GO:0020037|GO:0042597 RPE_RS15740 af603cc60d3127929cdb6a05f81cf8de 200 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 74 146 1.3E-8 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS00335 807b9324f2f93ede5d98edaf6c00f63e 137 Pfam PF01878 EVE domain 2 134 5.0E-46 T 23-04-2016 IPR002740 EVE domain RPE_RS00335 807b9324f2f93ede5d98edaf6c00f63e 137 Gene3D G3DSA:3.10.590.10 1 134 9.1E-27 T 23-04-2016 IPR002740 EVE domain RPE_RS00335 807b9324f2f93ede5d98edaf6c00f63e 137 SUPERFAMILY SSF88697 1 136 2.65E-52 T 23-04-2016 IPR015947 PUA-like domain RPE_RS00335 807b9324f2f93ede5d98edaf6c00f63e 137 PANTHER PTHR14087 1 136 1.2E-57 T 23-04-2016 RPE_RS06975 57093a619b2c27db58020d17b93f6420 366 PANTHER PTHR22893:SF14 5 366 2.1E-178 T 23-04-2016 RPE_RS06975 57093a619b2c27db58020d17b93f6420 366 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 6 338 5.9E-86 T 23-04-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 RPE_RS06975 57093a619b2c27db58020d17b93f6420 366 Gene3D G3DSA:3.20.20.70 3 360 1.6E-132 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS06975 57093a619b2c27db58020d17b93f6420 366 PANTHER PTHR22893 5 366 2.1E-178 T 23-04-2016 RPE_RS06975 57093a619b2c27db58020d17b93f6420 366 SUPERFAMILY SSF51395 2 360 4.58E-123 T 23-04-2016 RPE_RS14110 cef4997519123647dc1e7808121dcfcb 433 Gene3D G3DSA:3.90.1150.10 296 432 1.8E-54 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS14110 cef4997519123647dc1e7808121dcfcb 433 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 233 249 - T 23-04-2016 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0004372|GO:0006544|GO:0006563|GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RPE_RS14110 cef4997519123647dc1e7808121dcfcb 433 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 18 433 52.989 T 23-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RPE_RS14110 cef4997519123647dc1e7808121dcfcb 433 SUPERFAMILY SSF53383 14 432 6.61E-179 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS14110 cef4997519123647dc1e7808121dcfcb 433 PIRSF PIRSF000412 2 433 5.6E-168 T 23-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RPE_RS14110 cef4997519123647dc1e7808121dcfcb 433 Pfam PF00464 Serine hydroxymethyltransferase 19 396 2.3E-183 T 23-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RPE_RS14110 cef4997519123647dc1e7808121dcfcb 433 PANTHER PTHR11680 12 432 9.9E-253 T 23-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RPE_RS14110 cef4997519123647dc1e7808121dcfcb 433 Gene3D G3DSA:3.40.640.10 48 295 1.1E-106 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS09620 ab544b3bc21bbbe88176e3004aab5e58 106 Pfam PF05521 Phage head-tail joining protein 9 100 6.1E-17 T 23-04-2016 IPR008767 Bacteriophage SPP1, head-tail adaptor RPE_RS09820 b51b21f1c5ca23b38b21607e26944594 503 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 439 3.8E-135 T 23-04-2016 IPR002823 Protein of unknown function DUF112, transmembrane RPE_RS09820 b51b21f1c5ca23b38b21607e26944594 503 PANTHER PTHR35342 2 503 4.2E-301 T 23-04-2016 RPE_RS09820 b51b21f1c5ca23b38b21607e26944594 503 PANTHER PTHR35342:SF1 2 503 4.2E-301 T 23-04-2016 RPE_RS17900 0ea2cfdd60aecdd9672c6b45fdb4623a 101 Gene3D G3DSA:4.10.830.10 41 101 4.5E-27 T 23-04-2016 RPE_RS17900 0ea2cfdd60aecdd9672c6b45fdb4623a 101 Pfam PF00253 Ribosomal protein S14p/S29e 47 100 1.6E-21 T 23-04-2016 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17900 0ea2cfdd60aecdd9672c6b45fdb4623a 101 SUPERFAMILY SSF57716 2 101 3.23E-33 T 23-04-2016 RPE_RS17900 0ea2cfdd60aecdd9672c6b45fdb4623a 101 PANTHER PTHR19836 1 101 1.5E-47 T 23-04-2016 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17900 0ea2cfdd60aecdd9672c6b45fdb4623a 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 24.539 T 23-04-2016 IPR023036 Ribosomal protein S14, bacterial/plastid RPE_RS04460 38f0dc0ef0f65075f2f33bcf454765a3 247 Pfam PF09335 SNARE associated Golgi protein 66 175 7.5E-12 T 23-04-2016 IPR032816 SNARE associated Golgi protein RPE_RS09005 2eaaed927d45389282dd5ad3bbdd4f51 81 Pfam PF07238 PilZ domain 6 81 3.5E-6 T 23-04-2016 IPR009875 PilZ domain GO:0035438 RPE_RS09005 2eaaed927d45389282dd5ad3bbdd4f51 81 SUPERFAMILY SSF141371 10 81 5.69E-6 T 23-04-2016 RPE_RS05720 c5a87381c187a66af80f515012cadf43 136 Pfam PF01527 Transposase 20 77 2.7E-12 T 23-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 RPE_RS05720 c5a87381c187a66af80f515012cadf43 136 Gene3D G3DSA:1.10.10.10 16 64 7.7E-6 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS05720 c5a87381c187a66af80f515012cadf43 136 SUPERFAMILY SSF48295 14 64 1.78E-9 T 23-04-2016 IPR010921 Trp repressor/replication initiator GO:0043565 RPE_RS05720 c5a87381c187a66af80f515012cadf43 136 PANTHER PTHR37936 1 136 3.1E-18 T 23-04-2016 RPE_RS18240 001f68f47e4ab9ffff5a3cbbfbb6af36 692 Pfam PF02446 4-alpha-glucanotransferase 143 650 1.3E-123 T 23-04-2016 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 RPE_RS18240 001f68f47e4ab9ffff5a3cbbfbb6af36 692 Gene3D G3DSA:3.20.20.80 136 660 8.0E-159 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RPE_RS18240 001f68f47e4ab9ffff5a3cbbfbb6af36 692 SUPERFAMILY SSF51445 125 670 1.05E-144 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RPE_RS18240 001f68f47e4ab9ffff5a3cbbfbb6af36 692 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 100 660 7.2E-138 T 23-04-2016 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 RPE_RS18240 001f68f47e4ab9ffff5a3cbbfbb6af36 692 PANTHER PTHR32438 104 690 8.6E-155 T 23-04-2016 RPE_RS18240 001f68f47e4ab9ffff5a3cbbfbb6af36 692 PANTHER PTHR32438:SF5 104 690 8.6E-155 T 23-04-2016 RPE_RS00160 a538f0f6bbd613c4000ab3138afa0dc4 584 PANTHER PTHR11596:SF5 120 510 1.6E-111 T 23-04-2016 RPE_RS00160 a538f0f6bbd613c4000ab3138afa0dc4 584 PANTHER PTHR11596:SF5 533 581 1.6E-111 T 23-04-2016 RPE_RS00160 a538f0f6bbd613c4000ab3138afa0dc4 584 PANTHER PTHR11596 120 510 1.6E-111 T 23-04-2016 RPE_RS00160 a538f0f6bbd613c4000ab3138afa0dc4 584 PANTHER PTHR11596 533 581 1.6E-111 T 23-04-2016 RPE_RS00160 a538f0f6bbd613c4000ab3138afa0dc4 584 SMART SM00098 123 581 3.1E-35 T 23-04-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RPE_RS00160 a538f0f6bbd613c4000ab3138afa0dc4 584 PRINTS PR00113 Alkaline phosphatase signature 177 192 2.4E-34 T 23-04-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RPE_RS00160 a538f0f6bbd613c4000ab3138afa0dc4 584 PRINTS PR00113 Alkaline phosphatase signature 122 142 2.4E-34 T 23-04-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RPE_RS00160 a538f0f6bbd613c4000ab3138afa0dc4 584 PRINTS PR00113 Alkaline phosphatase signature 266 276 2.4E-34 T 23-04-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RPE_RS00160 a538f0f6bbd613c4000ab3138afa0dc4 584 PRINTS PR00113 Alkaline phosphatase signature 355 384 2.4E-34 T 23-04-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RPE_RS00160 a538f0f6bbd613c4000ab3138afa0dc4 584 PRINTS PR00113 Alkaline phosphatase signature 222 242 2.4E-34 T 23-04-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RPE_RS00160 a538f0f6bbd613c4000ab3138afa0dc4 584 SUPERFAMILY SSF53649 477 581 8.51E-112 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 RPE_RS00160 a538f0f6bbd613c4000ab3138afa0dc4 584 SUPERFAMILY SSF53649 116 442 8.51E-112 T 23-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 RPE_RS00160 a538f0f6bbd613c4000ab3138afa0dc4 584 Pfam PF00245 Alkaline phosphatase 122 580 8.7E-74 T 23-04-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RPE_RS00160 a538f0f6bbd613c4000ab3138afa0dc4 584 Gene3D G3DSA:3.40.720.10 522 582 6.9E-117 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 RPE_RS00160 a538f0f6bbd613c4000ab3138afa0dc4 584 Gene3D G3DSA:3.40.720.10 118 483 6.9E-117 T 23-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 RPE_RS15240 a6f981f9e76f436f6f912df68dacbc71 263 SUPERFAMILY SSF53335 8 205 3.53E-39 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS15240 a6f981f9e76f436f6f912df68dacbc71 263 Pfam PF08241 Methyltransferase domain 44 136 2.7E-20 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 RPE_RS15240 a6f981f9e76f436f6f912df68dacbc71 263 PANTHER PTHR10108 8 201 9.0E-31 T 23-04-2016 RPE_RS15240 a6f981f9e76f436f6f912df68dacbc71 263 Gene3D G3DSA:3.40.50.150 8 210 7.9E-40 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS21875 9e79b0303e827a91e721d934f935b780 713 PANTHER PTHR10742:SF302 439 574 9.4E-65 T 23-04-2016 RPE_RS21875 9e79b0303e827a91e721d934f935b780 713 PANTHER PTHR10742:SF302 3 99 9.4E-65 T 23-04-2016 RPE_RS21875 9e79b0303e827a91e721d934f935b780 713 PANTHER PTHR10742:SF302 602 706 9.4E-65 T 23-04-2016 RPE_RS21875 9e79b0303e827a91e721d934f935b780 713 PANTHER PTHR10742:SF302 264 376 9.4E-65 T 23-04-2016 RPE_RS21875 9e79b0303e827a91e721d934f935b780 713 PANTHER PTHR10742 439 574 9.4E-65 T 23-04-2016 RPE_RS21875 9e79b0303e827a91e721d934f935b780 713 SUPERFAMILY SSF51905 4 163 1.1E-19 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS21875 9e79b0303e827a91e721d934f935b780 713 SUPERFAMILY SSF51905 639 679 1.1E-19 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS21875 9e79b0303e827a91e721d934f935b780 713 SUPERFAMILY SSF51905 438 511 1.1E-19 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS21875 9e79b0303e827a91e721d934f935b780 713 SUPERFAMILY SSF51905 259 374 1.1E-19 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS21875 9e79b0303e827a91e721d934f935b780 713 PANTHER PTHR10742 187 225 9.4E-65 T 23-04-2016 RPE_RS21875 9e79b0303e827a91e721d934f935b780 713 PANTHER PTHR10742 3 99 9.4E-65 T 23-04-2016 RPE_RS21875 9e79b0303e827a91e721d934f935b780 713 PANTHER PTHR10742:SF302 187 225 9.4E-65 T 23-04-2016 RPE_RS21875 9e79b0303e827a91e721d934f935b780 713 Pfam PF13450 NAD(P)-binding Rossmann-like domain 8 73 4.4E-16 T 23-04-2016 RPE_RS21875 9e79b0303e827a91e721d934f935b780 713 PANTHER PTHR10742 602 706 9.4E-65 T 23-04-2016 RPE_RS21875 9e79b0303e827a91e721d934f935b780 713 PANTHER PTHR10742 264 376 9.4E-65 T 23-04-2016 RPE_RS21875 9e79b0303e827a91e721d934f935b780 713 Gene3D G3DSA:3.50.50.60 639 685 1.3E-21 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS21875 9e79b0303e827a91e721d934f935b780 713 Gene3D G3DSA:3.50.50.60 350 426 1.3E-21 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS21875 9e79b0303e827a91e721d934f935b780 713 Gene3D G3DSA:3.50.50.60 3 44 1.3E-21 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS22130 971ff7562cfe690640fd6dee62c5ada1 379 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 250 270 2.2E-35 T 23-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 RPE_RS22130 971ff7562cfe690640fd6dee62c5ada1 379 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 43 57 2.2E-35 T 23-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 RPE_RS22130 971ff7562cfe690640fd6dee62c5ada1 379 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 227 245 2.2E-35 T 23-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 RPE_RS22130 971ff7562cfe690640fd6dee62c5ada1 379 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 208 225 2.2E-35 T 23-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 RPE_RS22130 971ff7562cfe690640fd6dee62c5ada1 379 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 92 112 2.2E-35 T 23-04-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 RPE_RS22130 971ff7562cfe690640fd6dee62c5ada1 379 Pfam PF01555 DNA methylase 44 265 3.2E-53 T 23-04-2016 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 RPE_RS22130 971ff7562cfe690640fd6dee62c5ada1 379 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 47 53 - T 23-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RPE_RS22130 971ff7562cfe690640fd6dee62c5ada1 379 PANTHER PTHR13370 2 289 6.7E-72 T 23-04-2016 RPE_RS22130 971ff7562cfe690640fd6dee62c5ada1 379 SUPERFAMILY SSF53335 23 270 5.28E-67 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS22130 971ff7562cfe690640fd6dee62c5ada1 379 Gene3D G3DSA:3.40.50.150 23 271 5.1E-72 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS22130 971ff7562cfe690640fd6dee62c5ada1 379 PANTHER PTHR13370:SF8 2 289 6.7E-72 T 23-04-2016 RPE_RS02130 86aae96a890d060e4acdca33c510345b 131 SUPERFAMILY SSF54427 23 126 2.34E-28 T 23-04-2016 IPR032710 NTF2-like domain RPE_RS02130 86aae96a890d060e4acdca33c510345b 131 Gene3D G3DSA:3.10.450.50 2 126 1.3E-38 T 23-04-2016 IPR032710 NTF2-like domain RPE_RS12395 3d86a76075a5c3e222fe04bfba26ebc6 173 Pfam PF06114 Domain of unknown function (DUF955) 34 169 7.1E-25 T 23-04-2016 IPR010359 HTH domain, IrrE-type RPE_RS03125 6862a69332d38d347daddee5379b39c8 59 Pfam PF00556 Antenna complex alpha/beta subunit 6 41 5.5E-13 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS03125 6862a69332d38d347daddee5379b39c8 59 PRINTS PR00673 Light harvesting protein A chain signature 12 31 6.6E-11 T 23-04-2016 IPR018332 Antenna complex, alpha subunit RPE_RS03125 6862a69332d38d347daddee5379b39c8 59 PRINTS PR00673 Light harvesting protein A chain signature 31 42 6.6E-11 T 23-04-2016 IPR018332 Antenna complex, alpha subunit RPE_RS03125 6862a69332d38d347daddee5379b39c8 59 PRINTS PR00673 Light harvesting protein A chain signature 5 12 6.6E-11 T 23-04-2016 IPR018332 Antenna complex, alpha subunit RPE_RS03125 6862a69332d38d347daddee5379b39c8 59 ProSitePatterns PS00968 Antenna complexes alpha subunits signature. 25 41 - T 23-04-2016 IPR002361 Antenna complex, alpha subunit conserved site GO:0016021|GO:0019684|GO:0019866|GO:0030077|GO:0045156 RPE_RS03125 6862a69332d38d347daddee5379b39c8 59 SUPERFAMILY SSF56918 1 50 1.05E-20 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS03125 6862a69332d38d347daddee5379b39c8 59 Gene3D G3DSA:4.10.220.20 1 52 8.8E-29 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS07305 93d416d60cbbca538112651f14879673 326 PANTHER PTHR10366:SF469 1 326 2.5E-101 T 23-04-2016 RPE_RS07305 93d416d60cbbca538112651f14879673 326 PANTHER PTHR10366 1 326 2.5E-101 T 23-04-2016 RPE_RS07305 93d416d60cbbca538112651f14879673 326 Gene3D G3DSA:3.90.25.10 176 300 6.6E-26 T 23-04-2016 RPE_RS07305 93d416d60cbbca538112651f14879673 326 SUPERFAMILY SSF51735 2 321 5.45E-56 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS07305 93d416d60cbbca538112651f14879673 326 Gene3D G3DSA:3.40.50.720 3 175 2.5E-19 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS07305 93d416d60cbbca538112651f14879673 326 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 247 7.0E-40 T 23-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 RPE_RS07305 93d416d60cbbca538112651f14879673 326 TIGRFAM TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase 2 319 1.4E-121 T 23-04-2016 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20|UniPathway: UPA00356 RPE_RS04485 7d2c747a2b07afe3efd9be2fc828c344 116 Pfam PF00034 Cytochrome c 37 84 1.4E-4 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS04485 7d2c747a2b07afe3efd9be2fc828c344 116 SUPERFAMILY SSF46626 12 114 2.58E-13 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS04485 7d2c747a2b07afe3efd9be2fc828c344 116 Gene3D G3DSA:1.10.760.10 30 114 5.0E-8 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS01935 0bd49ff6fc7137b95df985b5e34f7b4a 283 PANTHER PTHR13696 19 282 7.9E-89 T 23-04-2016 RPE_RS01935 0bd49ff6fc7137b95df985b5e34f7b4a 283 PANTHER PTHR13696:SF52 19 282 7.9E-89 T 23-04-2016 RPE_RS01935 0bd49ff6fc7137b95df985b5e34f7b4a 283 SUPERFAMILY SSF52540 19 279 2.62E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01935 0bd49ff6fc7137b95df985b5e34f7b4a 283 Gene3D G3DSA:3.40.50.300 20 279 3.7E-71 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01935 0bd49ff6fc7137b95df985b5e34f7b4a 283 Pfam PF13614 AAA domain 20 201 1.6E-59 T 23-04-2016 IPR025669 AAA domain RPE_RS18000 212e519794a6e72a0ed951c56b3ef89b 391 Pfam PF01494 FAD binding domain 4 304 4.6E-14 T 23-04-2016 IPR002938 FAD-binding domain GO:0071949 RPE_RS18000 212e519794a6e72a0ed951c56b3ef89b 391 PANTHER PTHR13789 2 293 3.5E-13 T 23-04-2016 RPE_RS18000 212e519794a6e72a0ed951c56b3ef89b 391 SUPERFAMILY SSF51905 259 364 2.92E-29 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS18000 212e519794a6e72a0ed951c56b3ef89b 391 SUPERFAMILY SSF51905 4 159 2.92E-29 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS18000 212e519794a6e72a0ed951c56b3ef89b 391 Gene3D G3DSA:3.50.50.60 264 305 1.1E-19 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS18000 212e519794a6e72a0ed951c56b3ef89b 391 Gene3D G3DSA:3.50.50.60 2 164 1.1E-19 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS18000 212e519794a6e72a0ed951c56b3ef89b 391 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 138 153 7.5E-11 T 23-04-2016 RPE_RS18000 212e519794a6e72a0ed951c56b3ef89b 391 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 7.5E-11 T 23-04-2016 RPE_RS18000 212e519794a6e72a0ed951c56b3ef89b 391 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 272 287 7.5E-11 T 23-04-2016 RPE_RS18000 212e519794a6e72a0ed951c56b3ef89b 391 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 287 303 7.5E-11 T 23-04-2016 RPE_RS02320 cac0385b1ae33d149d62b24ef4957f66 240 PANTHER PTHR22572 7 238 1.8E-63 T 23-04-2016 RPE_RS02320 cac0385b1ae33d149d62b24ef4957f66 240 PANTHER PTHR22572:SF15 7 238 1.8E-63 T 23-04-2016 RPE_RS02320 cac0385b1ae33d149d62b24ef4957f66 240 Pfam PF12804 MobA-like NTP transferase domain 8 139 1.3E-14 T 23-04-2016 IPR025877 MobA-like NTP transferase RPE_RS02320 cac0385b1ae33d149d62b24ef4957f66 240 Gene3D G3DSA:3.90.550.10 5 236 6.5E-49 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS02320 cac0385b1ae33d149d62b24ef4957f66 240 SUPERFAMILY SSF53448 6 235 1.24E-47 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS01980 55b60863eed44276d920d2280ce35c46 148 PANTHER PTHR24567 1 141 8.6E-41 T 23-04-2016 RPE_RS01980 55b60863eed44276d920d2280ce35c46 148 Gene3D G3DSA:2.60.120.10 8 139 7.5E-24 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS01980 55b60863eed44276d920d2280ce35c46 148 SMART SM00100 15 129 1.4E-13 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RPE_RS01980 55b60863eed44276d920d2280ce35c46 148 PANTHER PTHR24567:SF36 1 141 8.6E-41 T 23-04-2016 RPE_RS01980 55b60863eed44276d920d2280ce35c46 148 Pfam PF00027 Cyclic nucleotide-binding domain 34 116 5.6E-18 T 23-04-2016 IPR000595 Cyclic nucleotide-binding domain RPE_RS01980 55b60863eed44276d920d2280ce35c46 148 SUPERFAMILY SSF51206 4 131 2.62E-26 T 23-04-2016 IPR018490 Cyclic nucleotide-binding-like RPE_RS19900 6ff0e8e492b79329c0a950b0c869cba7 296 PANTHER PTHR11935 18 281 5.9E-120 T 23-04-2016 RPE_RS19900 6ff0e8e492b79329c0a950b0c869cba7 296 Gene3D G3DSA:3.60.15.10 16 261 2.5E-46 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS19900 6ff0e8e492b79329c0a950b0c869cba7 296 PANTHER PTHR11935:SF110 18 281 5.9E-120 T 23-04-2016 RPE_RS19900 6ff0e8e492b79329c0a950b0c869cba7 296 SMART SM00849 24 214 3.0E-18 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS19900 6ff0e8e492b79329c0a950b0c869cba7 296 SUPERFAMILY SSF56281 19 262 9.61E-47 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS19900 6ff0e8e492b79329c0a950b0c869cba7 296 Pfam PF00753 Metallo-beta-lactamase superfamily 37 214 2.3E-20 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS21990 e90af56a937778b86e8be2128121255e 370 PANTHER PTHR30573:SF0 1 370 4.6E-162 T 23-04-2016 RPE_RS21990 e90af56a937778b86e8be2128121255e 370 Hamap MF_00568 Quinolinate synthase A [nadA]. 72 368 43.701 T 23-04-2016 IPR023066 Quinolinate synthase A, type 2 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 RPE_RS21990 e90af56a937778b86e8be2128121255e 370 SUPERFAMILY SSF142754 74 368 7.45E-108 T 23-04-2016 RPE_RS21990 e90af56a937778b86e8be2128121255e 370 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 75 368 1.2E-98 T 23-04-2016 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 RPE_RS21990 e90af56a937778b86e8be2128121255e 370 PANTHER PTHR30573 1 370 4.6E-162 T 23-04-2016 RPE_RS21990 e90af56a937778b86e8be2128121255e 370 Pfam PF02445 Quinolinate synthetase A protein 77 367 6.8E-111 T 23-04-2016 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 RPE_RS21300 121fca006690004fd87e65e608473be2 411 SUPERFAMILY SSF103473 11 407 7.19E-60 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS21300 121fca006690004fd87e65e608473be2 411 PANTHER PTHR11360 17 384 1.6E-162 T 23-04-2016 RPE_RS21300 121fca006690004fd87e65e608473be2 411 PANTHER PTHR11360:SF151 17 384 1.6E-162 T 23-04-2016 RPE_RS21300 121fca006690004fd87e65e608473be2 411 Gene3D G3DSA:1.20.1250.20 224 385 2.0E-20 T 23-04-2016 RPE_RS21300 121fca006690004fd87e65e608473be2 411 Gene3D G3DSA:1.20.1250.20 22 205 8.7E-25 T 23-04-2016 RPE_RS21300 121fca006690004fd87e65e608473be2 411 Pfam PF07690 Major Facilitator Superfamily 34 310 5.0E-28 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RPE_RS16085 8dc9f2a4051bfcdb11dbabf11ef03b37 168 SUPERFAMILY SSF48179 67 146 4.85E-9 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RPE_RS16085 8dc9f2a4051bfcdb11dbabf11ef03b37 168 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 67 136 3.0E-6 T 23-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 RPE_RS16085 8dc9f2a4051bfcdb11dbabf11ef03b37 168 Gene3D G3DSA:1.10.1040.10 67 137 2.1E-7 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RPE_RS15880 47fb62a1e675179b4f37d5d801f83d80 150 SUPERFAMILY SSF51735 1 90 3.25E-8 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS15880 47fb62a1e675179b4f37d5d801f83d80 150 Gene3D G3DSA:3.40.50.720 1 108 3.1E-9 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS08900 89aae62e3a20f3cf3dc58851fd7ff832 300 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 291 5.6E-15 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS08900 89aae62e3a20f3cf3dc58851fd7ff832 300 SUPERFAMILY SSF161098 33 283 6.54E-54 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS08900 89aae62e3a20f3cf3dc58851fd7ff832 300 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 33 292 2.2E-124 T 23-04-2016 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 RPE_RS08900 89aae62e3a20f3cf3dc58851fd7ff832 300 PANTHER PTHR30406:SF1 1 298 1.3E-158 T 23-04-2016 RPE_RS08900 89aae62e3a20f3cf3dc58851fd7ff832 300 PANTHER PTHR30406 1 298 1.3E-158 T 23-04-2016 RPE_RS08900 89aae62e3a20f3cf3dc58851fd7ff832 300 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 35 289 1.2E-98 T 23-04-2016 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 RPE_RS08900 89aae62e3a20f3cf3dc58851fd7ff832 300 Gene3D G3DSA:1.10.3720.10 35 292 4.3E-48 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS07255 3cbf845bc6ec1fb4c738a1e7e0ebc74a 160 Gene3D G3DSA:3.10.129.10 2 157 1.5E-37 T 23-04-2016 IPR029069 HotDog domain RPE_RS07255 3cbf845bc6ec1fb4c738a1e7e0ebc74a 160 Pfam PF01575 MaoC like domain 14 119 1.8E-9 T 23-04-2016 IPR002539 MaoC-like domain RPE_RS07255 3cbf845bc6ec1fb4c738a1e7e0ebc74a 160 SUPERFAMILY SSF54637 2 157 6.31E-31 T 23-04-2016 IPR029069 HotDog domain RPE_RS07255 3cbf845bc6ec1fb4c738a1e7e0ebc74a 160 PANTHER PTHR13078 2 156 6.1E-42 T 23-04-2016 RPE_RS06380 d3d9e56e1214a36e4761246d4c6a6195 140 PANTHER PTHR22924 2 131 2.0E-35 T 23-04-2016 RPE_RS06380 d3d9e56e1214a36e4761246d4c6a6195 140 Pfam PF00042 Globin 5 99 6.3E-11 T 23-04-2016 IPR000971 Globin GO:0019825|GO:0020037 RPE_RS06380 d3d9e56e1214a36e4761246d4c6a6195 140 PRINTS PR01907 Worm globin signature 50 61 4.4E-5 T 23-04-2016 RPE_RS06380 d3d9e56e1214a36e4761246d4c6a6195 140 PRINTS PR01907 Worm globin signature 94 108 4.4E-5 T 23-04-2016 RPE_RS06380 d3d9e56e1214a36e4761246d4c6a6195 140 PRINTS PR01907 Worm globin signature 74 85 4.4E-5 T 23-04-2016 RPE_RS06380 d3d9e56e1214a36e4761246d4c6a6195 140 PRINTS PR01907 Worm globin signature 118 133 4.4E-5 T 23-04-2016 RPE_RS06380 d3d9e56e1214a36e4761246d4c6a6195 140 Gene3D G3DSA:1.10.490.10 2 134 5.9E-40 T 23-04-2016 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 RPE_RS06380 d3d9e56e1214a36e4761246d4c6a6195 140 SUPERFAMILY SSF46458 2 131 4.16E-37 T 23-04-2016 IPR009050 Globin-like RPE_RS24390 fe378841d02fefcd678d651f9da085ef 411 PIRSF PIRSF028704 14 408 1.0E-150 T 23-04-2016 IPR014550 Uncharacterised conserved protein UCP028704, OpgC RPE_RS24390 fe378841d02fefcd678d651f9da085ef 411 PANTHER PTHR38592 1 392 8.9E-131 T 23-04-2016 RPE_RS24390 fe378841d02fefcd678d651f9da085ef 411 Pfam PF10129 OpgC protein 35 391 3.5E-128 T 23-04-2016 IPR014550 Uncharacterised conserved protein UCP028704, OpgC RPE_RS14450 7c5458995272a4e9a7d2f2409bb210a2 339 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 39 312 6.9E-78 T 23-04-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 RPE_RS14450 7c5458995272a4e9a7d2f2409bb210a2 339 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 29 5.4E-4 T 23-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RPE_RS14450 7c5458995272a4e9a7d2f2409bb210a2 339 PANTHER PTHR33376:SF4 2 339 3.3E-158 T 23-04-2016 RPE_RS14450 7c5458995272a4e9a7d2f2409bb210a2 339 PANTHER PTHR33376 2 339 3.3E-158 T 23-04-2016 RPE_RS14450 7c5458995272a4e9a7d2f2409bb210a2 339 PIRSF PIRSF006470 6 336 3.2E-73 T 23-04-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 RPE_RS14450 7c5458995272a4e9a7d2f2409bb210a2 339 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 39 286 3.6E-73 T 23-04-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 RPE_RS22445 76f936d01fc6d3f6b9bdb020b62bcf6d 148 SUPERFAMILY SSF54427 18 119 2.1E-19 T 23-04-2016 IPR032710 NTF2-like domain RPE_RS22445 76f936d01fc6d3f6b9bdb020b62bcf6d 148 Gene3D G3DSA:3.10.450.50 13 123 6.8E-11 T 23-04-2016 IPR032710 NTF2-like domain RPE_RS11935 b5cd0cf85433c86ea15921b12ec708fe 74 SUPERFAMILY SSF51230 6 72 1.14E-15 T 23-04-2016 IPR011053 Single hybrid motif RPE_RS11935 b5cd0cf85433c86ea15921b12ec708fe 74 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 28 45 - T 23-04-2016 IPR001882 Biotin-binding site RPE_RS11935 b5cd0cf85433c86ea15921b12ec708fe 74 Gene3D G3DSA:2.40.50.100 6 72 2.8E-17 T 23-04-2016 RPE_RS11935 b5cd0cf85433c86ea15921b12ec708fe 74 Pfam PF00364 Biotin-requiring enzyme 11 70 5.0E-14 T 23-04-2016 IPR000089 Biotin/lipoyl attachment RPE_RS11525 f0b85566d899274592bd424f65c5e432 314 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 1 313 3.1E-90 T 23-04-2016 IPR007296 Domain of unknown function DUF403 RPE_RS11525 f0b85566d899274592bd424f65c5e432 314 PANTHER PTHR34595 1 314 3.3E-128 T 23-04-2016 RPE_RS23620 9b609b900aa74a5f161748f29182c71a 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 230 247 9.5E-40 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RPE_RS23620 9b609b900aa74a5f161748f29182c71a 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 147 165 9.5E-40 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RPE_RS23620 9b609b900aa74a5f161748f29182c71a 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 111 124 9.5E-40 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RPE_RS23620 9b609b900aa74a5f161748f29182c71a 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 174 190 9.5E-40 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RPE_RS23620 9b609b900aa74a5f161748f29182c71a 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 270 285 9.5E-40 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RPE_RS23620 9b609b900aa74a5f161748f29182c71a 335 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 158 314 4.7E-66 T 23-04-2016 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: REACT_474 RPE_RS23620 9b609b900aa74a5f161748f29182c71a 335 PIRSF PIRSF000149 1 335 1.1E-137 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RPE_RS23620 9b609b900aa74a5f161748f29182c71a 335 PANTHER PTHR10836:SF50 1 331 6.4E-205 T 23-04-2016 RPE_RS23620 9b609b900aa74a5f161748f29182c71a 335 SMART SM00846 3 153 1.6E-93 T 23-04-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 RPE_RS23620 9b609b900aa74a5f161748f29182c71a 335 Gene3D G3DSA:3.30.360.10 162 316 6.6E-75 T 23-04-2016 RPE_RS23620 9b609b900aa74a5f161748f29182c71a 335 Gene3D G3DSA:3.40.50.720 1 161 8.8E-71 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS23620 9b609b900aa74a5f161748f29182c71a 335 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 153 1.0E-54 T 23-04-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 RPE_RS23620 9b609b900aa74a5f161748f29182c71a 335 SUPERFAMILY SSF51735 1 177 1.5E-60 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS23620 9b609b900aa74a5f161748f29182c71a 335 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 326 1.9E-129 T 23-04-2016 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: REACT_474|UniPathway: UPA00109 RPE_RS23620 9b609b900aa74a5f161748f29182c71a 335 SUPERFAMILY SSF55347 153 315 1.81E-71 T 23-04-2016 RPE_RS23620 9b609b900aa74a5f161748f29182c71a 335 PANTHER PTHR10836 1 331 6.4E-205 T 23-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 RPE_RS19915 a92d7bb1c39eca003576c288cf130c40 157 Gene3D G3DSA:3.10.129.10 2 150 3.8E-51 T 23-04-2016 IPR029069 HotDog domain RPE_RS19915 a92d7bb1c39eca003576c288cf130c40 157 SUPERFAMILY SSF54637 3 145 2.99E-30 T 23-04-2016 IPR029069 HotDog domain RPE_RS19915 a92d7bb1c39eca003576c288cf130c40 157 Pfam PF03061 Thioesterase superfamily 52 135 2.7E-9 T 23-04-2016 IPR006683 Thioesterase domain RPE_RS02615 ced2acffc77f9c43b227af274709fb34 821 Pfam PF02687 FtsX-like permease family 244 366 3.4E-11 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 RPE_RS02615 ced2acffc77f9c43b227af274709fb34 821 Pfam PF02687 FtsX-like permease family 691 810 1.2E-10 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 RPE_RS02615 ced2acffc77f9c43b227af274709fb34 821 PANTHER PTHR30489:SF6 3 184 1.7E-240 T 23-04-2016 RPE_RS02615 ced2acffc77f9c43b227af274709fb34 821 PANTHER PTHR30489:SF6 214 820 1.7E-240 T 23-04-2016 RPE_RS02615 ced2acffc77f9c43b227af274709fb34 821 Pfam PF12704 MacB-like periplasmic core domain 463 656 1.5E-8 T 23-04-2016 IPR025857 MacB-like periplasmic core domain RPE_RS02615 ced2acffc77f9c43b227af274709fb34 821 PANTHER PTHR30489 3 184 1.7E-240 T 23-04-2016 RPE_RS02615 ced2acffc77f9c43b227af274709fb34 821 PANTHER PTHR30489 214 820 1.7E-240 T 23-04-2016 RPE_RS21810 8b2cd14e38df4ebe0a8b382c8233317b 102 SUPERFAMILY SSF47413 7 89 2.11E-24 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS21810 8b2cd14e38df4ebe0a8b382c8233317b 102 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 3 79 1.5E-25 T 23-04-2016 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 RPE_RS21810 8b2cd14e38df4ebe0a8b382c8233317b 102 SMART SM00530 11 66 1.5E-4 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RPE_RS21810 8b2cd14e38df4ebe0a8b382c8233317b 102 Pfam PF01381 Helix-turn-helix 12 54 9.9E-6 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RPE_RS21810 8b2cd14e38df4ebe0a8b382c8233317b 102 PANTHER PTHR36924:SF1 1 88 2.7E-27 T 23-04-2016 RPE_RS21810 8b2cd14e38df4ebe0a8b382c8233317b 102 PANTHER PTHR36924 1 88 2.7E-27 T 23-04-2016 RPE_RS21810 8b2cd14e38df4ebe0a8b382c8233317b 102 Gene3D G3DSA:1.10.260.40 3 80 2.2E-30 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS23860 87104fb2b2331393a26ca472618d3df4 195 PANTHER PTHR23407:SF1 1 195 9.8E-44 T 23-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase RPE_RS23860 87104fb2b2331393a26ca472618d3df4 195 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 10 186 5.6E-29 T 23-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase RPE_RS23860 87104fb2b2331393a26ca472618d3df4 195 PANTHER PTHR23407 1 195 9.8E-44 T 23-04-2016 RPE_RS23860 87104fb2b2331393a26ca472618d3df4 195 Gene3D G3DSA:3.40.50.10420 10 191 4.9E-44 T 23-04-2016 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain RPE_RS23860 87104fb2b2331393a26ca472618d3df4 195 SUPERFAMILY SSF100950 10 190 9.77E-43 T 23-04-2016 RPE_RS23860 87104fb2b2331393a26ca472618d3df4 195 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 11 186 2.7E-44 T 23-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase RPE_RS23860 87104fb2b2331393a26ca472618d3df4 195 PIRSF PIRSF006806 7 189 7.6E-32 T 23-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase RPE_RS17135 913895d040d98eae2e47f8ef91d3a50b 267 PANTHER PTHR30336 1 264 4.0E-51 T 23-04-2016 RPE_RS17135 913895d040d98eae2e47f8ef91d3a50b 267 Pfam PF02698 DUF218 domain 80 247 1.4E-26 T 23-04-2016 IPR003848 Domain of unknown function DUF218 RPE_RS17135 913895d040d98eae2e47f8ef91d3a50b 267 Gene3D G3DSA:3.40.50.620 75 216 1.0E-24 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS17135 913895d040d98eae2e47f8ef91d3a50b 267 PANTHER PTHR30336:SF1 1 264 4.0E-51 T 23-04-2016 RPE_RS13230 8ce3ae758f7906db42246e69f11a7a3b 324 PANTHER PTHR30273 6 324 1.6E-39 T 23-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component RPE_RS13230 8ce3ae758f7906db42246e69f11a7a3b 324 Pfam PF16344 Domain of unknown function (DUF4974) 224 306 1.5E-8 T 23-04-2016 IPR032508 Protein FecR, C-terminal RPE_RS13230 8ce3ae758f7906db42246e69f11a7a3b 324 Pfam PF16220 Domain of unknown function (DUF4880) 14 53 4.3E-12 T 23-04-2016 IPR032623 FecR, N-terminal RPE_RS13230 8ce3ae758f7906db42246e69f11a7a3b 324 Pfam PF04773 FecR protein 120 211 2.6E-9 T 23-04-2016 IPR006860 FecR protein RPE_RS13230 8ce3ae758f7906db42246e69f11a7a3b 324 PANTHER PTHR30273:SF2 6 324 1.6E-39 T 23-04-2016 RPE_RS13230 8ce3ae758f7906db42246e69f11a7a3b 324 PIRSF PIRSF018266 3 324 5.7E-63 T 23-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component RPE_RS04140 9945b2acf3b2c35f5d5e2e9ed9de6c46 156 SUPERFAMILY SSF53795 6 114 1.34E-16 T 23-04-2016 RPE_RS04140 9945b2acf3b2c35f5d5e2e9ed9de6c46 156 Pfam PF07475 HPr Serine kinase C-terminal domain 10 88 1.1E-11 T 23-04-2016 IPR011104 HPr kinase/phosphorylase, C-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 RPE_RS04140 9945b2acf3b2c35f5d5e2e9ed9de6c46 156 Gene3D G3DSA:3.40.50.300 8 142 4.6E-29 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS11785 a68c0305c53dde745235afc5d7a7774d 226 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 47 225 7.4E-64 T 23-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RPE_RS11785 a68c0305c53dde745235afc5d7a7774d 226 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 42 225 38.381 T 23-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RPE_RS11785 a68c0305c53dde745235afc5d7a7774d 226 Pfam PF01227 GTP cyclohydrolase I 47 224 2.2E-72 T 23-04-2016 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RPE_RS11785 a68c0305c53dde745235afc5d7a7774d 226 SUPERFAMILY SSF55620 35 225 3.11E-72 T 23-04-2016 RPE_RS11785 a68c0305c53dde745235afc5d7a7774d 226 Gene3D G3DSA:1.10.286.10 41 93 1.6E-23 T 23-04-2016 RPE_RS11785 a68c0305c53dde745235afc5d7a7774d 226 PANTHER PTHR11109 1 226 4.5E-93 T 23-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RPE_RS11785 a68c0305c53dde745235afc5d7a7774d 226 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 104 120 - T 23-04-2016 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RPE_RS11785 a68c0305c53dde745235afc5d7a7774d 226 Gene3D G3DSA:3.30.1130.10 99 225 2.2E-53 T 23-04-2016 RPE_RS24290 6d19a8d89b51ea2acc9e5b7985fbf1e8 159 SMART SM00448 26 142 1.3E-5 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS24290 6d19a8d89b51ea2acc9e5b7985fbf1e8 159 Pfam PF00072 Response regulator receiver domain 28 142 1.0E-9 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS24290 6d19a8d89b51ea2acc9e5b7985fbf1e8 159 Gene3D G3DSA:3.40.50.2300 22 154 4.6E-18 T 23-04-2016 RPE_RS24290 6d19a8d89b51ea2acc9e5b7985fbf1e8 159 SUPERFAMILY SSF52172 25 153 5.41E-18 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS10520 283c5893a7181e8daf97660ae4ff9115 356 SUPERFAMILY SSF46785 26 97 7.53E-9 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS10520 283c5893a7181e8daf97660ae4ff9115 356 Gene3D G3DSA:3.40.50.150 173 341 5.6E-28 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS10520 283c5893a7181e8daf97660ae4ff9115 356 PANTHER PTHR10108 325 356 8.4E-20 T 23-04-2016 RPE_RS10520 283c5893a7181e8daf97660ae4ff9115 356 PANTHER PTHR10108 146 295 8.4E-20 T 23-04-2016 RPE_RS10520 283c5893a7181e8daf97660ae4ff9115 356 Gene3D G3DSA:1.10.10.10 18 93 3.5E-8 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS10520 283c5893a7181e8daf97660ae4ff9115 356 SUPERFAMILY SSF53335 169 348 3.8E-30 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS10520 283c5893a7181e8daf97660ae4ff9115 356 Pfam PF13847 Methyltransferase domain 175 335 1.4E-17 T 23-04-2016 IPR025714 Methyltransferase domain RPE_RS11110 3fb9e49c98b46f2e6ed6546db4363f72 416 PANTHER PTHR11926:SF77 1 412 3.7E-103 T 23-04-2016 RPE_RS11110 3fb9e49c98b46f2e6ed6546db4363f72 416 PANTHER PTHR11926 1 412 3.7E-103 T 23-04-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 RPE_RS11110 3fb9e49c98b46f2e6ed6546db4363f72 416 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 252 395 5.0E-6 T 23-04-2016 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 RPE_RS11110 3fb9e49c98b46f2e6ed6546db4363f72 416 SUPERFAMILY SSF53756 1 412 2.34E-101 T 23-04-2016 RPE_RS11110 3fb9e49c98b46f2e6ed6546db4363f72 416 Gene3D G3DSA:3.40.50.2000 316 399 7.8E-4 T 23-04-2016 RPE_RS11110 3fb9e49c98b46f2e6ed6546db4363f72 416 Gene3D G3DSA:3.40.50.2000 3 268 2.1E-74 T 23-04-2016 RPE_RS11110 3fb9e49c98b46f2e6ed6546db4363f72 416 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 4 135 2.3E-18 T 23-04-2016 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RPE_RS06215 dad247cc5ecf45310c06542a841b7a4d 396 SUPERFAMILY SSF56796 5 391 5.23E-92 T 23-04-2016 RPE_RS06215 dad247cc5ecf45310c06542a841b7a4d 396 PANTHER PTHR11496:SF68 1 390 9.3E-80 T 23-04-2016 RPE_RS06215 dad247cc5ecf45310c06542a841b7a4d 396 Gene3D G3DSA:1.20.1090.10 190 392 3.0E-45 T 23-04-2016 RPE_RS06215 dad247cc5ecf45310c06542a841b7a4d 396 Pfam PF00465 Iron-containing alcohol dehydrogenase 12 387 1.5E-100 T 23-04-2016 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 RPE_RS06215 dad247cc5ecf45310c06542a841b7a4d 396 Gene3D G3DSA:3.40.50.1970 5 189 1.1E-45 T 23-04-2016 RPE_RS06215 dad247cc5ecf45310c06542a841b7a4d 396 PANTHER PTHR11496 1 390 9.3E-80 T 23-04-2016 RPE_RS12645 00b3433a85a6a38b737634aa9389ea78 121 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 23 120 1.1E-38 T 23-04-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 RPE_RS12645 00b3433a85a6a38b737634aa9389ea78 121 PANTHER PTHR11058:SF10 1 121 8.7E-75 T 23-04-2016 RPE_RS12645 00b3433a85a6a38b737634aa9389ea78 121 PANTHER PTHR11058 1 121 8.7E-75 T 23-04-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 RPE_RS12645 00b3433a85a6a38b737634aa9389ea78 121 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 4 121 20.173 T 23-04-2016 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 RPE_RS05010 5e3f225a7dfcf70426a34ebdbf7875cf 444 Gene3D G3DSA:3.30.300.30 337 442 1.1E-34 T 23-04-2016 RPE_RS05010 5e3f225a7dfcf70426a34ebdbf7875cf 444 PIRSF PIRSF006444 14 443 1.3E-209 T 23-04-2016 IPR011880 Phenylacetate-CoA ligase GO:0010124|GO:0047475 KEGG: 00360+6.2.1.30|MetaCyc: PWY-1341|MetaCyc: PWY-6318|MetaCyc: PWY-7716|UniPathway: UPA00930 RPE_RS05010 5e3f225a7dfcf70426a34ebdbf7875cf 444 Pfam PF00501 AMP-binding enzyme 93 302 1.6E-15 T 23-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RPE_RS05010 5e3f225a7dfcf70426a34ebdbf7875cf 444 Gene3D G3DSA:3.40.50.980 97 258 7.1E-14 T 23-04-2016 RPE_RS05010 5e3f225a7dfcf70426a34ebdbf7875cf 444 Pfam PF14535 AMP-binding enzyme C-terminal domain 347 441 1.3E-25 T 23-04-2016 IPR028154 AMP-dependent ligase, C-terminal RPE_RS05010 5e3f225a7dfcf70426a34ebdbf7875cf 444 PANTHER PTHR24095:SF175 71 441 5.9E-197 T 23-04-2016 RPE_RS05010 5e3f225a7dfcf70426a34ebdbf7875cf 444 PANTHER PTHR24095 71 441 5.9E-197 T 23-04-2016 RPE_RS05010 5e3f225a7dfcf70426a34ebdbf7875cf 444 TIGRFAM TIGR02155 PA_CoA_ligase: phenylacetate-CoA ligase 23 441 6.8E-224 T 23-04-2016 IPR011880 Phenylacetate-CoA ligase GO:0010124|GO:0047475 KEGG: 00360+6.2.1.30|MetaCyc: PWY-1341|MetaCyc: PWY-6318|MetaCyc: PWY-7716|UniPathway: UPA00930 RPE_RS05010 5e3f225a7dfcf70426a34ebdbf7875cf 444 SUPERFAMILY SSF56801 40 396 6.54E-64 T 23-04-2016 RPE_RS02585 ff58f064668334e8020ba27afe7049bd 162 Pfam PF16242 Pyridoxamine 5'-phosphate oxidase like 10 153 1.2E-46 T 23-04-2016 RPE_RS02585 ff58f064668334e8020ba27afe7049bd 162 SUPERFAMILY SSF50475 10 134 2.43E-31 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RPE_RS02585 ff58f064668334e8020ba27afe7049bd 162 Gene3D G3DSA:2.30.110.10 9 161 2.0E-48 T 23-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RPE_RS02585 ff58f064668334e8020ba27afe7049bd 162 PANTHER PTHR34818 14 160 1.1E-33 T 23-04-2016 RPE_RS23360 b4cbba7d845aee50ca11f419763af652 731 Gene3D G3DSA:1.10.287.950 437 633 2.9E-40 T 23-04-2016 RPE_RS23360 b4cbba7d845aee50ca11f419763af652 731 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 482 660 7.1E-35 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS23360 b4cbba7d845aee50ca11f419763af652 731 SUPERFAMILY SSF58104 356 390 2.49E-60 T 23-04-2016 RPE_RS23360 b4cbba7d845aee50ca11f419763af652 731 SUPERFAMILY SSF58104 448 662 2.49E-60 T 23-04-2016 RPE_RS23360 b4cbba7d845aee50ca11f419763af652 731 SMART SM00283 428 661 3.6E-63 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS23360 b4cbba7d845aee50ca11f419763af652 731 SMART SM00304 336 388 4.6E-9 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS23360 b4cbba7d845aee50ca11f419763af652 731 PANTHER PTHR32089 410 664 4.2E-101 T 23-04-2016 RPE_RS23360 b4cbba7d845aee50ca11f419763af652 731 PANTHER PTHR32089 277 370 4.2E-101 T 23-04-2016 RPE_RS23360 b4cbba7d845aee50ca11f419763af652 731 Pfam PF00672 HAMP domain 316 384 6.8E-11 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS14965 d7d1ba1b0084e183cd22df67006419cf 1012 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 14 635 1.7E-154 T 23-04-2016 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 RPE_RS14965 d7d1ba1b0084e183cd22df67006419cf 1012 SUPERFAMILY SSF50249 291 335 3.23E-14 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS14965 d7d1ba1b0084e183cd22df67006419cf 1012 SUPERFAMILY SSF50249 40 81 3.23E-14 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS14965 d7d1ba1b0084e183cd22df67006419cf 1012 Hamap MF_00970 Ribonuclease E [rne]. 2 1007 33.427 T 23-04-2016 IPR028878 Ribonuclease E GO:0006396|GO:0008995 RPE_RS14965 d7d1ba1b0084e183cd22df67006419cf 1012 Gene3D G3DSA:2.40.50.140 293 335 1.9E-41 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS14965 d7d1ba1b0084e183cd22df67006419cf 1012 Gene3D G3DSA:2.40.50.140 31 83 1.9E-41 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS14965 d7d1ba1b0084e183cd22df67006419cf 1012 PANTHER PTHR30001 281 991 1.7E-275 T 23-04-2016 RPE_RS14965 d7d1ba1b0084e183cd22df67006419cf 1012 PANTHER PTHR30001 1 121 1.7E-275 T 23-04-2016 RPE_RS14965 d7d1ba1b0084e183cd22df67006419cf 1012 PANTHER PTHR30001:SF1 281 991 1.7E-275 T 23-04-2016 RPE_RS14965 d7d1ba1b0084e183cd22df67006419cf 1012 PANTHER PTHR30001:SF1 1 121 1.7E-275 T 23-04-2016 RPE_RS14965 d7d1ba1b0084e183cd22df67006419cf 1012 Pfam PF10150 Ribonuclease E/G family 331 602 1.5E-93 T 23-04-2016 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 RPE_RS11910 8cc29d5301744c0dd030807e40e703b3 388 PANTHER PTHR18919:SF8 1 388 2.7E-121 T 23-04-2016 RPE_RS11910 8cc29d5301744c0dd030807e40e703b3 388 SUPERFAMILY SSF53901 243 374 2.38E-27 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS11910 8cc29d5301744c0dd030807e40e703b3 388 Pfam PF00108 Thiolase, N-terminal domain 5 224 1.8E-24 T 23-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 RPE_RS11910 8cc29d5301744c0dd030807e40e703b3 388 SUPERFAMILY SSF53901 4 229 1.73E-39 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS11910 8cc29d5301744c0dd030807e40e703b3 388 PANTHER PTHR18919 1 388 2.7E-121 T 23-04-2016 RPE_RS11910 8cc29d5301744c0dd030807e40e703b3 388 Gene3D G3DSA:3.40.47.10 206 226 6.7E-27 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS11910 8cc29d5301744c0dd030807e40e703b3 388 Gene3D G3DSA:3.40.47.10 13 120 6.7E-27 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS11910 8cc29d5301744c0dd030807e40e703b3 388 Gene3D G3DSA:3.40.47.10 244 383 1.2E-20 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS11910 8cc29d5301744c0dd030807e40e703b3 388 Gene3D G3DSA:3.40.47.10 138 181 1.2E-20 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS11910 8cc29d5301744c0dd030807e40e703b3 388 Pfam PF02803 Thiolase, C-terminal domain 251 351 6.0E-10 T 23-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 RPE_RS11910 8cc29d5301744c0dd030807e40e703b3 388 PIRSF PIRSF000429 1 385 5.4E-69 T 23-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 RPE_RS15295 753a8b45cfda12684ca29c90eff00c5a 104 SUPERFAMILY SSF103481 4 102 2.62E-20 T 23-04-2016 RPE_RS15295 753a8b45cfda12684ca29c90eff00c5a 104 Pfam PF00893 Small Multidrug Resistance protein 1 93 1.2E-27 T 23-04-2016 IPR000390 Small multidrug resistance protein family GO:0016021 RPE_RS15295 753a8b45cfda12684ca29c90eff00c5a 104 PANTHER PTHR30561 1 103 5.6E-47 T 23-04-2016 RPE_RS15295 753a8b45cfda12684ca29c90eff00c5a 104 PANTHER PTHR30561:SF0 1 103 5.6E-47 T 23-04-2016 RPE_RS07680 65e095e1584a36511fb813b6d466c58e 121 Pfam PF07309 Flagellar protein FlaF 5 117 2.4E-35 T 23-04-2016 IPR010845 Flagellar FlaF GO:0044781 RPE_RS23495 bbb2f8132c927533924f21fb1be24fb0 165 PANTHER PTHR30128:SF18 35 163 5.5E-53 T 23-04-2016 RPE_RS23495 bbb2f8132c927533924f21fb1be24fb0 165 Gene3D G3DSA:3.30.1330.60 48 159 4.1E-35 T 23-04-2016 IPR006665 OmpA-like domain RPE_RS23495 bbb2f8132c927533924f21fb1be24fb0 165 PRINTS PR01021 OMPA domain signature 106 122 1.5E-14 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RPE_RS23495 bbb2f8132c927533924f21fb1be24fb0 165 PRINTS PR01021 OMPA domain signature 91 106 1.5E-14 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RPE_RS23495 bbb2f8132c927533924f21fb1be24fb0 165 PRINTS PR01021 OMPA domain signature 61 83 1.5E-14 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RPE_RS23495 bbb2f8132c927533924f21fb1be24fb0 165 SUPERFAMILY SSF103088 49 161 1.18E-35 T 23-04-2016 IPR006665 OmpA-like domain RPE_RS23495 bbb2f8132c927533924f21fb1be24fb0 165 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 58 160 4.3E-42 T 23-04-2016 IPR014169 Peptidoglycan-associated lipoprotein GO:0009279 RPE_RS23495 bbb2f8132c927533924f21fb1be24fb0 165 PANTHER PTHR30128 35 163 5.5E-53 T 23-04-2016 RPE_RS23495 bbb2f8132c927533924f21fb1be24fb0 165 Pfam PF00691 OmpA family 60 155 7.4E-23 T 23-04-2016 IPR006665 OmpA-like domain RPE_RS23495 bbb2f8132c927533924f21fb1be24fb0 165 ProSitePatterns PS01068 OmpA-like domain. 93 137 - T 23-04-2016 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 RPE_RS08490 c0c82f4ef898d1d4609fc1eeebcc6b45 165 Pfam PF09361 Phasin protein 60 156 1.9E-13 T 23-04-2016 IPR018968 Phasin RPE_RS08490 c0c82f4ef898d1d4609fc1eeebcc6b45 165 TIGRFAM TIGR01985 phasin_2: phasin 37 159 2.3E-29 T 23-04-2016 IPR010234 Phasin, subfamily 2 RPE_RS06140 f06038d03a26ca5cfd142aa8636d1a19 276 Pfam PF08223 PaaX-like protein C-terminal domain 90 247 6.9E-29 T 23-04-2016 IPR013225 PaaX-like, C-terminal UniPathway: UPA00930 RPE_RS14070 f2659882351337589dc9282466b1327f 68 Gene3D G3DSA:2.20.70.10 36 62 1.8E-6 T 23-04-2016 RPE_RS11705 b8e62c908eb08902448616753bfb8566 340 Gene3D G3DSA:3.40.1090.10 29 196 3.7E-10 T 23-04-2016 RPE_RS11705 b8e62c908eb08902448616753bfb8566 340 PANTHER PTHR14226:SF24 22 326 6.7E-104 T 23-04-2016 RPE_RS11705 b8e62c908eb08902448616753bfb8566 340 Pfam PF01734 Patatin-like phospholipase 29 188 5.5E-21 T 23-04-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 RPE_RS11705 b8e62c908eb08902448616753bfb8566 340 PANTHER PTHR14226 22 326 6.7E-104 T 23-04-2016 RPE_RS11705 b8e62c908eb08902448616753bfb8566 340 SUPERFAMILY SSF52151 23 329 6.28E-57 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RPE_RS15420 1131c1551430869335c6f9960d1aa8cf 239 PANTHER PTHR35008 40 204 4.1E-12 T 23-04-2016 RPE_RS15420 1131c1551430869335c6f9960d1aa8cf 239 SUPERFAMILY SSF46626 58 192 5.79E-19 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS15420 1131c1551430869335c6f9960d1aa8cf 239 Gene3D G3DSA:1.10.760.10 73 193 1.0E-15 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS15420 1131c1551430869335c6f9960d1aa8cf 239 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 78 161 8.2E-9 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS03820 78e00858bfc2ea9f3a2cb0ea8b245936 228 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 30 218 4.3E-19 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS03820 78e00858bfc2ea9f3a2cb0ea8b245936 228 PANTHER PTHR30183 1 227 2.9E-65 T 23-04-2016 RPE_RS03820 78e00858bfc2ea9f3a2cb0ea8b245936 228 Gene3D G3DSA:1.10.3720.10 6 224 1.0E-41 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS03820 78e00858bfc2ea9f3a2cb0ea8b245936 228 SUPERFAMILY SSF161098 6 219 5.23E-46 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS03820 78e00858bfc2ea9f3a2cb0ea8b245936 228 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 14 222 3.2E-72 T 23-04-2016 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 RPE_RS20140 08d1aca507c4c9f0125ab20058e1e3b3 154 Pfam PF11000 Protein of unknown function (DUF2840) 4 151 7.2E-75 T 23-04-2016 IPR021263 Protein of unknown function DUF2840 RPE_RS05480 e5c1d8de517c61f762b1dd68328975fa 591 Gene3D G3DSA:3.90.70.10 459 504 1.0E-4 T 23-04-2016 RPE_RS05480 e5c1d8de517c61f762b1dd68328975fa 591 PANTHER PTHR10183 457 496 1.7E-15 T 23-04-2016 RPE_RS05480 e5c1d8de517c61f762b1dd68328975fa 591 PANTHER PTHR10183 286 433 1.7E-15 T 23-04-2016 RPE_RS05480 e5c1d8de517c61f762b1dd68328975fa 591 SUPERFAMILY SSF54001 279 498 1.76E-33 T 23-04-2016 RPE_RS05480 e5c1d8de517c61f762b1dd68328975fa 591 Pfam PF00648 Calpain family cysteine protease 283 497 3.7E-21 T 23-04-2016 IPR001300 Peptidase C2, calpain, catalytic domain GO:0004198|GO:0005622|GO:0006508 RPE_RS05480 e5c1d8de517c61f762b1dd68328975fa 591 PANTHER PTHR10183:SF267 457 496 1.7E-15 T 23-04-2016 RPE_RS05480 e5c1d8de517c61f762b1dd68328975fa 591 PANTHER PTHR10183:SF267 286 433 1.7E-15 T 23-04-2016 RPE_RS05480 e5c1d8de517c61f762b1dd68328975fa 591 SMART SM00230 241 542 9.2E-4 T 23-04-2016 IPR001300 Peptidase C2, calpain, catalytic domain GO:0004198|GO:0005622|GO:0006508 RPE_RS02980 90e5c7c8759d894c195a537bd88a8f95 322 PANTHER PTHR23091 179 313 5.4E-12 T 23-04-2016 RPE_RS02980 90e5c7c8759d894c195a537bd88a8f95 322 SUPERFAMILY SSF55729 14 145 4.71E-16 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS02980 90e5c7c8759d894c195a537bd88a8f95 322 Gene3D G3DSA:3.40.630.30 4 144 3.8E-14 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS02980 90e5c7c8759d894c195a537bd88a8f95 322 Pfam PF00583 Acetyltransferase (GNAT) family 228 311 7.5E-8 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RPE_RS02980 90e5c7c8759d894c195a537bd88a8f95 322 SUPERFAMILY SSF55729 178 315 4.71E-17 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS02980 90e5c7c8759d894c195a537bd88a8f95 322 Gene3D G3DSA:3.40.630.30 178 314 3.2E-18 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS04250 f148be890cc4ac6c43a494ad6e76d131 263 SUPERFAMILY SSF48613 23 260 1.85E-66 T 23-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 RPE_RS04250 f148be890cc4ac6c43a494ad6e76d131 263 TIGRFAM TIGR02111 PQQ_syn_pqqC: coenzyme PQQ biosynthesis protein C 24 257 1.4E-109 T 23-04-2016 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420|UniPathway: UPA00539 RPE_RS04250 f148be890cc4ac6c43a494ad6e76d131 263 Pfam PF03070 TENA/THI-4/PQQC family 31 239 3.4E-49 T 23-04-2016 IPR004305 Thiaminase-2/PQQC RPE_RS04250 f148be890cc4ac6c43a494ad6e76d131 263 PANTHER PTHR40279 1 259 3.3E-153 T 23-04-2016 RPE_RS04250 f148be890cc4ac6c43a494ad6e76d131 263 Hamap MF_00654 Pyrroloquinoline-quinone synthase [pqqC]. 1 263 131.36 T 23-04-2016 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420|UniPathway: UPA00539 RPE_RS04250 f148be890cc4ac6c43a494ad6e76d131 263 PANTHER PTHR40279:SF2 1 259 3.3E-153 T 23-04-2016 RPE_RS04250 f148be890cc4ac6c43a494ad6e76d131 263 Gene3D G3DSA:1.20.910.10 23 259 1.1E-100 T 23-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 RPE_RS09325 5ef99e1b68618a0f3af856bccac51c8f 718 SUPERFAMILY SSF52242 549 711 5.23E-54 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RPE_RS09325 5ef99e1b68618a0f3af856bccac51c8f 718 TIGRFAM TIGR00641 acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain 27 548 2.1E-274 T 23-04-2016 IPR006098 Methylmalonyl-CoA mutase, alpha chain, catalytic GO:0004494|GO:0008152|GO:0031419 RPE_RS09325 5ef99e1b68618a0f3af856bccac51c8f 718 PANTHER PTHR23408 27 688 0.0 T 23-04-2016 RPE_RS09325 5ef99e1b68618a0f3af856bccac51c8f 718 ProSitePatterns PS00544 Methylmalonyl-CoA mutase signature. 370 395 - T 23-04-2016 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0008152|GO:0016866|GO:0031419 RPE_RS09325 5ef99e1b68618a0f3af856bccac51c8f 718 Gene3D G3DSA:3.40.50.280 548 709 7.3E-66 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RPE_RS09325 5ef99e1b68618a0f3af856bccac51c8f 718 PANTHER PTHR23408:SF1 27 688 0.0 T 23-04-2016 RPE_RS09325 5ef99e1b68618a0f3af856bccac51c8f 718 Pfam PF02310 B12 binding domain 584 695 7.0E-14 T 23-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 RPE_RS09325 5ef99e1b68618a0f3af856bccac51c8f 718 Gene3D G3DSA:3.20.20.240 27 493 8.3E-208 T 23-04-2016 IPR014348 Cobalamin (vitamin B12)-dependent enzyme, catalytic subdomain GO:0008152|GO:0016866|GO:0031419 RPE_RS09325 5ef99e1b68618a0f3af856bccac51c8f 718 SUPERFAMILY SSF51703 20 543 3.4E-218 T 23-04-2016 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0008152|GO:0031419 RPE_RS09325 5ef99e1b68618a0f3af856bccac51c8f 718 Pfam PF01642 Methylmalonyl-CoA mutase 29 541 4.5E-235 T 23-04-2016 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0008152|GO:0016866|GO:0031419 RPE_RS09325 5ef99e1b68618a0f3af856bccac51c8f 718 TIGRFAM TIGR00640 acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain 581 709 1.2E-57 T 23-04-2016 IPR006159 Methylmalonyl-CoA mutase, C-terminal GO:0016853 RPE_RS12040 1475f7554c1ee86c853643028d7290c4 181 PANTHER PTHR37952 1 179 6.4E-94 T 23-04-2016 RPE_RS12040 1475f7554c1ee86c853643028d7290c4 181 PANTHER PTHR37952:SF2 1 179 6.4E-94 T 23-04-2016 RPE_RS12040 1475f7554c1ee86c853643028d7290c4 181 Pfam PF05981 CreA protein 38 166 4.6E-50 T 23-04-2016 IPR010292 Uncharacterised protein family CreA RPE_RS12040 1475f7554c1ee86c853643028d7290c4 181 PIRSF PIRSF003174 8 176 8.6E-68 T 23-04-2016 IPR010292 Uncharacterised protein family CreA RPE_RS24220 24da813e36ffbad00abff4e92983fec7 315 Pfam PF01012 Electron transfer flavoprotein domain 3 171 1.0E-35 T 23-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 RPE_RS24220 24da813e36ffbad00abff4e92983fec7 315 Gene3D G3DSA:3.40.50.1220 184 310 2.8E-60 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RPE_RS24220 24da813e36ffbad00abff4e92983fec7 315 PANTHER PTHR10909 105 309 9.8E-127 T 23-04-2016 RPE_RS24220 24da813e36ffbad00abff4e92983fec7 315 PANTHER PTHR10909:SF294 105 309 9.8E-127 T 23-04-2016 RPE_RS24220 24da813e36ffbad00abff4e92983fec7 315 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 254 280 - T 23-04-2016 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site RPE_RS24220 24da813e36ffbad00abff4e92983fec7 315 Gene3D G3DSA:3.40.50.620 1 181 7.9E-54 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS24220 24da813e36ffbad00abff4e92983fec7 315 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 190 273 6.2E-35 T 23-04-2016 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal RPE_RS24220 24da813e36ffbad00abff4e92983fec7 315 SMART SM00893 3 182 4.7E-53 T 23-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 RPE_RS24220 24da813e36ffbad00abff4e92983fec7 315 SUPERFAMILY SSF52467 189 310 2.78E-46 T 23-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RPE_RS24220 24da813e36ffbad00abff4e92983fec7 315 PIRSF PIRSF000089 1 315 3.6E-104 T 23-04-2016 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 RPE_RS24220 24da813e36ffbad00abff4e92983fec7 315 SUPERFAMILY SSF52402 3 184 2.18E-50 T 23-04-2016 RPE_RS12465 787b37e65c631f60a0dc4b18c56e79c3 94 Gene3D G3DSA:1.10.260.40 14 63 3.2E-9 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS12465 787b37e65c631f60a0dc4b18c56e79c3 94 SUPERFAMILY SSF47413 10 63 3.22E-9 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS12465 787b37e65c631f60a0dc4b18c56e79c3 94 SMART SM00530 14 68 0.0089 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RPE_RS12465 787b37e65c631f60a0dc4b18c56e79c3 94 Pfam PF01381 Helix-turn-helix 15 63 1.6E-7 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RPE_RS09755 e72647d31241561906db611dd32efcac 458 SMART SM00267 277 445 4.8E-59 T 23-04-2016 IPR000160 GGDEF domain RPE_RS09755 e72647d31241561906db611dd32efcac 458 PANTHER PTHR10799 310 445 4.5E-28 T 23-04-2016 RPE_RS09755 e72647d31241561906db611dd32efcac 458 SUPERFAMILY SSF158472 216 263 1.11E-6 T 23-04-2016 RPE_RS09755 e72647d31241561906db611dd32efcac 458 Pfam PF00990 Diguanylate cyclase, GGDEF domain 288 441 2.5E-43 T 23-04-2016 IPR000160 GGDEF domain RPE_RS09755 e72647d31241561906db611dd32efcac 458 SMART SM00304 215 268 7.0E-5 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS09755 e72647d31241561906db611dd32efcac 458 Pfam PF00672 HAMP domain 196 261 4.1E-8 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS09755 e72647d31241561906db611dd32efcac 458 Pfam PF12729 Four helix bundle sensory module for signal transduction 6 188 6.3E-26 T 23-04-2016 IPR024478 4HB MCP domain RPE_RS09755 e72647d31241561906db611dd32efcac 458 Gene3D G3DSA:3.30.70.270 290 444 8.8E-51 T 23-04-2016 RPE_RS09755 e72647d31241561906db611dd32efcac 458 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 284 444 4.6E-46 T 23-04-2016 IPR000160 GGDEF domain RPE_RS09755 e72647d31241561906db611dd32efcac 458 SUPERFAMILY SSF55073 293 443 6.28E-46 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS07015 434a99972738ba2d21077a644d5d940e 117 PANTHER PTHR38781:SF1 29 96 1.9E-12 T 23-04-2016 RPE_RS07015 434a99972738ba2d21077a644d5d940e 117 PANTHER PTHR38781 29 96 1.9E-12 T 23-04-2016 RPE_RS07015 434a99972738ba2d21077a644d5d940e 117 Pfam PF04221 RelB antitoxin 31 108 4.2E-18 T 23-04-2016 IPR007337 RelB antitoxin/Antitoxin DinJ RPE_RS07015 434a99972738ba2d21077a644d5d940e 117 TIGRFAM TIGR02384 RelB_DinJ: addiction module antitoxin, RelB/DinJ family 31 109 6.5E-22 T 23-04-2016 IPR007337 RelB antitoxin/Antitoxin DinJ RPE_RS03660 3d8a52e52f95e1ccb26f0d69649a24f8 231 PIRSF PIRSF000887 14 229 8.3E-47 T 23-04-2016 IPR024173 Phosphoesterase, MJ0037 RPE_RS03660 3d8a52e52f95e1ccb26f0d69649a24f8 231 SUPERFAMILY SSF56300 35 125 7.27E-14 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RPE_RS03660 3d8a52e52f95e1ccb26f0d69649a24f8 231 Pfam PF00149 Calcineurin-like phosphoesterase 35 135 5.5E-6 T 23-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 RPE_RS03660 3d8a52e52f95e1ccb26f0d69649a24f8 231 PANTHER PTHR39323 13 230 1.7E-49 T 23-04-2016 RPE_RS03660 3d8a52e52f95e1ccb26f0d69649a24f8 231 Gene3D G3DSA:3.60.21.10 35 124 7.8E-9 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RPE_RS03660 3d8a52e52f95e1ccb26f0d69649a24f8 231 PANTHER PTHR39323:SF1 13 230 1.7E-49 T 23-04-2016 RPE_RS03660 3d8a52e52f95e1ccb26f0d69649a24f8 231 TIGRFAM TIGR04123 P_estr_lig_assc: metallophosphoesterase, DNA ligase-associated 15 207 2.0E-67 T 23-04-2016 IPR026336 Metallophosphoesterase, DNA ligase-associated RPE_RS15260 3321fd37ab5b7bf1ab0eb32c02c5da6c 334 PANTHER PTHR18866:SF74 145 334 5.3E-36 T 23-04-2016 RPE_RS15260 3321fd37ab5b7bf1ab0eb32c02c5da6c 334 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 8 306 1.8E-72 T 23-04-2016 IPR003778 Carboxyltransferase domain, subdomain A and B RPE_RS15260 3321fd37ab5b7bf1ab0eb32c02c5da6c 334 SMART SM00797 25 299 1.1E-111 T 23-04-2016 IPR003778 Carboxyltransferase domain, subdomain A and B RPE_RS15260 3321fd37ab5b7bf1ab0eb32c02c5da6c 334 PANTHER PTHR18866 145 334 5.3E-36 T 23-04-2016 RPE_RS15260 3321fd37ab5b7bf1ab0eb32c02c5da6c 334 Pfam PF02626 Allophanate hydrolase subunit 2 26 282 1.3E-74 T 23-04-2016 IPR003778 Carboxyltransferase domain, subdomain A and B RPE_RS15260 3321fd37ab5b7bf1ab0eb32c02c5da6c 334 Gene3D G3DSA:2.40.100.10 190 291 9.1E-7 T 23-04-2016 IPR029000 Cyclophilin-like domain RPE_RS15260 3321fd37ab5b7bf1ab0eb32c02c5da6c 334 SUPERFAMILY SSF50891 176 287 4.17E-9 T 23-04-2016 IPR029000 Cyclophilin-like domain RPE_RS22435 858528c112095b0cb47ae1d63fbbed19 102 Pfam PF07110 EthD domain 12 89 9.9E-14 T 23-04-2016 IPR009799 EthD domain RPE_RS22435 858528c112095b0cb47ae1d63fbbed19 102 PANTHER PTHR40260 2 99 2.7E-19 T 23-04-2016 RPE_RS22435 858528c112095b0cb47ae1d63fbbed19 102 TIGRFAM TIGR02118 TIGR02118: conserved hypothetical protein 2 100 1.6E-31 T 23-04-2016 IPR009799 EthD domain RPE_RS22435 858528c112095b0cb47ae1d63fbbed19 102 Gene3D G3DSA:3.30.70.900 2 100 4.7E-34 T 23-04-2016 RPE_RS22435 858528c112095b0cb47ae1d63fbbed19 102 SUPERFAMILY SSF54909 3 99 9.12E-25 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RPE_RS04710 b85c7780b90bd4c68cf359b5425f371d 67 SUPERFAMILY SSF55331 2 63 6.41E-15 T 23-04-2016 IPR014347 Tautomerase/MIF superfamily RPE_RS04710 b85c7780b90bd4c68cf359b5425f371d 67 PANTHER PTHR35530 1 65 4.7E-15 T 23-04-2016 RPE_RS04710 b85c7780b90bd4c68cf359b5425f371d 67 Gene3D G3DSA:3.30.429.20 2 62 9.9E-18 T 23-04-2016 RPE_RS04710 b85c7780b90bd4c68cf359b5425f371d 67 Pfam PF01361 Tautomerase enzyme 2 60 1.1E-10 T 23-04-2016 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 RPE_RS19125 2a19cb56a0a7a8cc9ff03c2b4fae95ed 252 PANTHER PTHR24322 10 142 2.5E-52 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS19125 2a19cb56a0a7a8cc9ff03c2b4fae95ed 252 PANTHER PTHR24322 158 194 2.5E-52 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS19125 2a19cb56a0a7a8cc9ff03c2b4fae95ed 252 SUPERFAMILY SSF51735 3 247 3.54E-57 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS19125 2a19cb56a0a7a8cc9ff03c2b4fae95ed 252 Pfam PF00106 short chain dehydrogenase 8 202 2.0E-44 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS19125 2a19cb56a0a7a8cc9ff03c2b4fae95ed 252 Gene3D G3DSA:3.40.50.720 2 248 2.2E-64 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS19125 2a19cb56a0a7a8cc9ff03c2b4fae95ed 252 PANTHER PTHR24322:SF356 10 142 2.5E-52 T 23-04-2016 RPE_RS19125 2a19cb56a0a7a8cc9ff03c2b4fae95ed 252 PANTHER PTHR24322:SF356 158 194 2.5E-52 T 23-04-2016 RPE_RS19125 2a19cb56a0a7a8cc9ff03c2b4fae95ed 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 1.7E-9 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS19125 2a19cb56a0a7a8cc9ff03c2b4fae95ed 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 1.7E-9 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS19125 2a19cb56a0a7a8cc9ff03c2b4fae95ed 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 1.7E-9 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS19125 2a19cb56a0a7a8cc9ff03c2b4fae95ed 252 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RPE_RS19125 2a19cb56a0a7a8cc9ff03c2b4fae95ed 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 6.8E-26 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS19125 2a19cb56a0a7a8cc9ff03c2b4fae95ed 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 6.8E-26 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS19125 2a19cb56a0a7a8cc9ff03c2b4fae95ed 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 6.8E-26 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS19125 2a19cb56a0a7a8cc9ff03c2b4fae95ed 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 6.8E-26 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS19125 2a19cb56a0a7a8cc9ff03c2b4fae95ed 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 6.8E-26 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS19125 2a19cb56a0a7a8cc9ff03c2b4fae95ed 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 6.8E-26 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS01390 a24dc7d6c0272eb8a229b3b71e7208d7 176 ProSitePatterns PS00893 Nudix box signature. 56 77 - T 23-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RPE_RS01390 a24dc7d6c0272eb8a229b3b71e7208d7 176 PANTHER PTHR11839:SF13 11 172 7.4E-33 T 23-04-2016 RPE_RS01390 a24dc7d6c0272eb8a229b3b71e7208d7 176 SUPERFAMILY SSF55811 8 170 3.38E-27 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS01390 a24dc7d6c0272eb8a229b3b71e7208d7 176 PANTHER PTHR11839 11 172 7.4E-33 T 23-04-2016 RPE_RS01390 a24dc7d6c0272eb8a229b3b71e7208d7 176 Gene3D G3DSA:3.90.79.10 16 171 3.3E-27 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS01390 a24dc7d6c0272eb8a229b3b71e7208d7 176 Pfam PF00293 NUDIX domain 16 162 9.3E-23 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RPE_RS13710 3a888cf2944d7c090195b51b3a06ef54 246 PANTHER PTHR24220:SF490 8 246 9.8E-185 T 23-04-2016 RPE_RS13710 3a888cf2944d7c090195b51b3a06ef54 246 Gene3D G3DSA:3.40.50.300 5 242 5.3E-83 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS13710 3a888cf2944d7c090195b51b3a06ef54 246 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS13710 3a888cf2944d7c090195b51b3a06ef54 246 SUPERFAMILY SSF52540 6 240 3.55E-81 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS13710 3a888cf2944d7c090195b51b3a06ef54 246 Pfam PF00005 ABC transporter 22 170 1.2E-36 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS13710 3a888cf2944d7c090195b51b3a06ef54 246 SMART SM00382 31 226 1.1E-14 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS13710 3a888cf2944d7c090195b51b3a06ef54 246 PIRSF PIRSF039085 3 246 4.9E-108 T 23-04-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 RPE_RS13710 3a888cf2944d7c090195b51b3a06ef54 246 PANTHER PTHR24220 8 246 9.8E-185 T 23-04-2016 RPE_RS03810 504bddc3e08a1abe80bfae81ce672580 306 Pfam PF00082 Subtilase family 31 269 2.9E-10 T 23-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RPE_RS03810 504bddc3e08a1abe80bfae81ce672580 306 SUPERFAMILY SSF52743 17 274 2.36E-29 T 23-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RPE_RS03810 504bddc3e08a1abe80bfae81ce672580 306 Gene3D G3DSA:3.40.50.200 25 276 2.7E-23 T 23-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RPE_RS22615 2995aafd39c3f771ec564f7fe93db437 133 PANTHER PTHR33937 1 131 2.3E-64 T 23-04-2016 RPE_RS22615 2995aafd39c3f771ec564f7fe93db437 133 Gene3D G3DSA:3.30.420.130 1 118 5.2E-43 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis RPE_RS22615 2995aafd39c3f771ec564f7fe93db437 133 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 12 103 6.1E-19 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis RPE_RS22615 2995aafd39c3f771ec564f7fe93db437 133 SUPERFAMILY SSF53146 1 118 4.84E-35 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis RPE_RS22615 2995aafd39c3f771ec564f7fe93db437 133 TIGRFAM TIGR02663 nifX: nitrogen fixation protein NifX 1 119 1.8E-52 T 23-04-2016 IPR013480 Nitrogen fixation protein NifX GO:0009399|GO:0051188|GO:0051540 RPE_RS22615 2995aafd39c3f771ec564f7fe93db437 133 PANTHER PTHR33937:SF1 1 131 2.3E-64 T 23-04-2016 RPE_RS07900 4654ede50099c9c41e72ae6f70e2fd3c 180 Pfam PF04250 Protein of unknown function (DUF429) 1 161 5.2E-24 T 23-04-2016 IPR007362 Protein of unknown function DUF429 RPE_RS00690 15e78230e97327348f1716a1a4177cba 215 Pfam PF00226 DnaJ domain 159 210 1.5E-9 T 23-04-2016 IPR001623 DnaJ domain RPE_RS00690 15e78230e97327348f1716a1a4177cba 215 PRINTS PR00625 DnaJ domain signature 158 176 1.5E-5 T 23-04-2016 IPR001623 DnaJ domain RPE_RS00690 15e78230e97327348f1716a1a4177cba 215 PRINTS PR00625 DnaJ domain signature 193 213 1.5E-5 T 23-04-2016 IPR001623 DnaJ domain RPE_RS00690 15e78230e97327348f1716a1a4177cba 215 PRINTS PR00625 DnaJ domain signature 176 191 1.5E-5 T 23-04-2016 IPR001623 DnaJ domain RPE_RS00690 15e78230e97327348f1716a1a4177cba 215 SMART SM00271 155 213 1.1E-8 T 23-04-2016 IPR001623 DnaJ domain RPE_RS00690 15e78230e97327348f1716a1a4177cba 215 Gene3D G3DSA:1.10.287.110 154 210 1.7E-9 T 23-04-2016 IPR001623 DnaJ domain RPE_RS00690 15e78230e97327348f1716a1a4177cba 215 SUPERFAMILY SSF46565 153 209 4.58E-12 T 23-04-2016 IPR001623 DnaJ domain RPE_RS00670 7bee19ebcf94e2e825bfb6d0e1b5839c 166 PANTHER PTHR34235 6 159 4.7E-36 T 23-04-2016 RPE_RS00670 7bee19ebcf94e2e825bfb6d0e1b5839c 166 PANTHER PTHR34235:SF3 6 159 4.7E-36 T 23-04-2016 RPE_RS00670 7bee19ebcf94e2e825bfb6d0e1b5839c 166 Pfam PF01724 Domain of unknown function DUF29 17 148 5.3E-35 T 23-04-2016 IPR002636 Protein from unkown function DUF29 RPE_RS06980 a46bf2c928a2c27d022cf7d878e1f4ea 353 PANTHER PTHR30482:SF2 1 304 2.8E-128 T 23-04-2016 RPE_RS06980 a46bf2c928a2c27d022cf7d878e1f4ea 353 PANTHER PTHR30482:SF2 322 350 2.8E-128 T 23-04-2016 RPE_RS06980 a46bf2c928a2c27d022cf7d878e1f4ea 353 PANTHER PTHR30482 1 304 2.8E-128 T 23-04-2016 RPE_RS06980 a46bf2c928a2c27d022cf7d878e1f4ea 353 PANTHER PTHR30482 322 350 2.8E-128 T 23-04-2016 RPE_RS06980 a46bf2c928a2c27d022cf7d878e1f4ea 353 Pfam PF02653 Branched-chain amino acid transport system / permease component 38 333 2.6E-29 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RPE_RS01585 19defc7b064337278c084b727af976be 121 Gene3D G3DSA:1.10.150.320 49 115 8.9E-13 T 23-04-2016 RPE_RS01585 19defc7b064337278c084b727af976be 121 Pfam PF12836 Helix-hairpin-helix motif 58 115 9.4E-12 T 23-04-2016 RPE_RS01585 19defc7b064337278c084b727af976be 121 SUPERFAMILY SSF81585 56 116 5.36E-14 T 23-04-2016 RPE_RS24760 83f81629524bc95a29c97fa17377dcc6 408 PANTHER PTHR32089 10 137 6.3E-15 T 23-04-2016 RPE_RS24760 83f81629524bc95a29c97fa17377dcc6 408 SUPERFAMILY SSF55785 25 108 1.12E-16 T 23-04-2016 IPR000014 PAS domain RPE_RS24760 83f81629524bc95a29c97fa17377dcc6 408 PANTHER PTHR32089:SF52 10 137 6.3E-15 T 23-04-2016 RPE_RS24760 83f81629524bc95a29c97fa17377dcc6 408 Pfam PF08447 PAS fold 41 108 4.4E-9 T 23-04-2016 IPR013655 PAS fold-3 GO:0005515 RPE_RS24760 83f81629524bc95a29c97fa17377dcc6 408 Gene3D G3DSA:3.30.450.20 27 108 5.1E-11 T 23-04-2016 RPE_RS14090 1e6d7ddf9a5c43ae479e9edf48490d86 36 Pfam PF07704 Rv0623-like transcription factor 1 35 6.7E-7 T 23-04-2016 IPR011660 Rv0623-like transcription factor RPE_RS17495 09497ea69ea170deb5173a150ab60847 353 SUPERFAMILY SSF55729 164 321 3.6E-8 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS17495 09497ea69ea170deb5173a150ab60847 353 Pfam PF13480 Acetyltransferase (GNAT) domain 162 300 1.0E-24 T 23-04-2016 RPE_RS14395 cb3689057e888da1abefd43d4ddaab60 229 Gene3D G3DSA:3.40.50.300 11 218 2.4E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14395 cb3689057e888da1abefd43d4ddaab60 229 Pfam PF02223 Thymidylate kinase 17 209 1.4E-40 T 23-04-2016 RPE_RS14395 cb3689057e888da1abefd43d4ddaab60 229 PANTHER PTHR10344 1 226 8.1E-63 T 23-04-2016 RPE_RS14395 cb3689057e888da1abefd43d4ddaab60 229 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 11 209 1.6E-45 T 23-04-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 RPE_RS14395 cb3689057e888da1abefd43d4ddaab60 229 ProSitePatterns PS01331 Thymidylate kinase signature. 103 115 - T 23-04-2016 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 RPE_RS14395 cb3689057e888da1abefd43d4ddaab60 229 SUPERFAMILY SSF52540 11 217 3.5E-52 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14395 cb3689057e888da1abefd43d4ddaab60 229 Hamap MF_00165 Thymidylate kinase [tmk]. 13 218 28.493 T 23-04-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 RPE_RS04845 b4ea4cfd9765c2f8d2803a9754c4cd52 286 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 207 284 9.6E-18 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 RPE_RS04845 b4ea4cfd9765c2f8d2803a9754c4cd52 286 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 208 285 1.7E-23 T 23-04-2016 IPR006260 TonB, C-terminal GO:0006810 RPE_RS04845 b4ea4cfd9765c2f8d2803a9754c4cd52 286 PRINTS PR01217 Proline rich extensin signature 83 99 1.5E-11 T 23-04-2016 RPE_RS04845 b4ea4cfd9765c2f8d2803a9754c4cd52 286 PRINTS PR01217 Proline rich extensin signature 106 123 1.5E-11 T 23-04-2016 RPE_RS04845 b4ea4cfd9765c2f8d2803a9754c4cd52 286 PRINTS PR01217 Proline rich extensin signature 57 78 1.5E-11 T 23-04-2016 RPE_RS04845 b4ea4cfd9765c2f8d2803a9754c4cd52 286 PRINTS PR01217 Proline rich extensin signature 126 151 1.5E-11 T 23-04-2016 RPE_RS04845 b4ea4cfd9765c2f8d2803a9754c4cd52 286 SUPERFAMILY SSF74653 201 283 1.7E-17 T 23-04-2016 RPE_RS04845 b4ea4cfd9765c2f8d2803a9754c4cd52 286 Gene3D G3DSA:3.30.1150.10 170 285 1.7E-28 T 23-04-2016 RPE_RS04845 b4ea4cfd9765c2f8d2803a9754c4cd52 286 PANTHER PTHR33446 17 286 2.3E-28 T 23-04-2016 RPE_RS04845 b4ea4cfd9765c2f8d2803a9754c4cd52 286 PANTHER PTHR33446:SF2 17 286 2.3E-28 T 23-04-2016 RPE_RS18660 74006c03ff2f92af77c6e295e003f151 238 PIRSF PIRSF009467 15 238 1.4E-68 T 23-04-2016 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 RPE_RS18660 74006c03ff2f92af77c6e295e003f151 238 PANTHER PTHR33620 17 238 7.1E-38 T 23-04-2016 RPE_RS18660 74006c03ff2f92af77c6e295e003f151 238 Pfam PF01730 UreF 49 195 2.0E-37 T 23-04-2016 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 RPE_RS18660 74006c03ff2f92af77c6e295e003f151 238 Hamap MF_01385 Urease accessory protein UreF [ureF]. 17 238 32.843 T 23-04-2016 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 RPE_RS21355 aa019317b998cb9ab7978943bf0b5a05 191 PANTHER PTHR30086 2 191 7.3E-33 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RPE_RS21355 aa019317b998cb9ab7978943bf0b5a05 191 Pfam PF01810 LysE type translocator 3 188 9.5E-36 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RPE_RS00620 b3970f72b2602b296843dba8a557e7a4 194 Pfam PF02559 CarD-like/TRCF domain 7 114 1.4E-14 T 23-04-2016 IPR003711 CarD-like/TRCF domain RPE_RS00620 b3970f72b2602b296843dba8a557e7a4 194 SUPERFAMILY SSF141259 4 72 7.72E-16 T 23-04-2016 IPR003711 CarD-like/TRCF domain RPE_RS00620 b3970f72b2602b296843dba8a557e7a4 194 PANTHER PTHR38447 7 192 3.8E-62 T 23-04-2016 RPE_RS00620 b3970f72b2602b296843dba8a557e7a4 194 SMART SM01058 6 116 5.2E-35 T 23-04-2016 IPR003711 CarD-like/TRCF domain RPE_RS04975 5bd118ba8c87bfbdf0eab582de9038c2 95 TIGRFAM TIGR02157 PA_CoA_Oxy2: phenylacetate-CoA oxygenase, PaaH subunit 7 95 6.6E-40 T 23-04-2016 IPR009359 Phenylacetic acid degradation B UniPathway: UPA00930 RPE_RS04975 5bd118ba8c87bfbdf0eab582de9038c2 95 Pfam PF06243 Phenylacetic acid degradation B 6 92 2.1E-37 T 23-04-2016 IPR009359 Phenylacetic acid degradation B UniPathway: UPA00930 RPE_RS04975 5bd118ba8c87bfbdf0eab582de9038c2 95 PIRSF PIRSF030200 1 95 1.3E-40 T 23-04-2016 IPR009359 Phenylacetic acid degradation B UniPathway: UPA00930 RPE_RS10560 ba1f11d8a0e068ffaf664794862bfe0b 360 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 68 80 5.6E-5 T 23-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RPE_RS10560 ba1f11d8a0e068ffaf664794862bfe0b 360 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 23-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RPE_RS10560 ba1f11d8a0e068ffaf664794862bfe0b 360 Pfam PF00953 Glycosyl transferase family 4 99 284 8.9E-35 T 23-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RPE_RS10560 ba1f11d8a0e068ffaf664794862bfe0b 360 ProSitePatterns PS01348 MraY family signature 2. 189 200 - T 23-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RPE_RS10560 ba1f11d8a0e068ffaf664794862bfe0b 360 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 24 358 24.286 T 23-04-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RPE_RS10560 ba1f11d8a0e068ffaf664794862bfe0b 360 PANTHER PTHR22926 2 360 4.2E-159 T 23-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RPE_RS10560 ba1f11d8a0e068ffaf664794862bfe0b 360 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 38 360 6.8E-128 T 23-04-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RPE_RS10560 ba1f11d8a0e068ffaf664794862bfe0b 360 PANTHER PTHR22926:SF5 2 360 4.2E-159 T 23-04-2016 RPE_RS06560 55626ae8577662d8317097ccbd808cf1 409 PANTHER PTHR31332:SF0 41 399 1.6E-105 T 23-04-2016 RPE_RS06560 55626ae8577662d8317097ccbd808cf1 409 Pfam PF04422 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term 79 153 3.1E-19 T 23-04-2016 IPR007516 Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal RPE_RS06560 55626ae8577662d8317097ccbd808cf1 409 PANTHER PTHR31332 41 399 1.6E-105 T 23-04-2016 RPE_RS06560 55626ae8577662d8317097ccbd808cf1 409 Pfam PF04432 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus 162 304 3.8E-31 T 23-04-2016 IPR007525 Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal RPE_RS18700 2d70cd47c999fa758b9dbbb14763bbe9 231 SMART SM00382 26 190 3.1E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS18700 2d70cd47c999fa758b9dbbb14763bbe9 231 SUPERFAMILY SSF52540 2 219 3.2E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18700 2d70cd47c999fa758b9dbbb14763bbe9 231 Gene3D G3DSA:3.40.50.300 1 220 3.8E-58 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18700 2d70cd47c999fa758b9dbbb14763bbe9 231 Pfam PF00005 ABC transporter 17 160 1.8E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS18700 2d70cd47c999fa758b9dbbb14763bbe9 231 TIGRFAM TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE 2 230 1.2E-100 T 23-04-2016 IPR017780 ABC transporter, urea, ATP-binding protein, UrtE RPE_RS18700 2d70cd47c999fa758b9dbbb14763bbe9 231 PANTHER PTHR24220:SF404 3 211 1.3E-119 T 23-04-2016 RPE_RS18700 2d70cd47c999fa758b9dbbb14763bbe9 231 PANTHER PTHR24220 3 211 1.3E-119 T 23-04-2016 RPE_RS17780 8c64e68074952c61a3ff6e7ddccf87bb 71 Gene3D G3DSA:3.40.109.10 1 66 4.1E-22 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 RPE_RS17780 8c64e68074952c61a3ff6e7ddccf87bb 71 Pfam PF00881 Nitroreductase family 8 55 4.3E-17 T 23-04-2016 IPR029479 Nitroreductase RPE_RS17780 8c64e68074952c61a3ff6e7ddccf87bb 71 SUPERFAMILY SSF55469 1 70 3.14E-22 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 RPE_RS17780 8c64e68074952c61a3ff6e7ddccf87bb 71 PANTHER PTHR23026 1 52 7.9E-17 T 23-04-2016 RPE_RS14610 141c2fac53b796adf1838e162f5abdc7 321 SUPERFAMILY SSF52540 76 280 1.15E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14610 141c2fac53b796adf1838e162f5abdc7 321 PANTHER PTHR13779:SF28 36 222 7.9E-91 T 23-04-2016 RPE_RS14610 141c2fac53b796adf1838e162f5abdc7 321 PANTHER PTHR13779:SF28 245 318 7.9E-91 T 23-04-2016 RPE_RS14610 141c2fac53b796adf1838e162f5abdc7 321 Pfam PF05673 Protein of unknown function (DUF815) 67 313 2.7E-107 T 23-04-2016 IPR008533 Domain of unknown function DUF815 RPE_RS14610 141c2fac53b796adf1838e162f5abdc7 321 Gene3D G3DSA:3.40.50.300 104 227 9.6E-10 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS14610 141c2fac53b796adf1838e162f5abdc7 321 PANTHER PTHR13779 36 222 7.9E-91 T 23-04-2016 RPE_RS14610 141c2fac53b796adf1838e162f5abdc7 321 PANTHER PTHR13779 245 318 7.9E-91 T 23-04-2016 RPE_RS10415 79e8dd96dd185f0732addd5637ade2db 513 Pfam PF14356 Domain of unknown function (DUF4403) 50 507 9.3E-112 T 23-04-2016 IPR025515 Protein of unknown function DUF4403 RPE_RS08960 e3aeb3804262d3f0f5f0342b4058714f 387 PANTHER PTHR22576 7 314 2.5E-49 T 23-04-2016 RPE_RS08960 e3aeb3804262d3f0f5f0342b4058714f 387 Pfam PF00656 Caspase domain 11 185 2.2E-16 T 23-04-2016 RPE_RS08960 e3aeb3804262d3f0f5f0342b4058714f 387 PANTHER PTHR22576:SF30 7 314 2.5E-49 T 23-04-2016 RPE_RS08960 e3aeb3804262d3f0f5f0342b4058714f 387 Gene3D G3DSA:3.40.50.1460 8 185 4.4E-7 T 23-04-2016 IPR029030 Caspase-like domain RPE_RS08960 e3aeb3804262d3f0f5f0342b4058714f 387 SUPERFAMILY SSF52129 3 188 1.79E-30 T 23-04-2016 IPR029030 Caspase-like domain RPE_RS14880 3aea6daa9f522decae2948f8811fa507 133 Pfam PF01521 Iron-sulphur cluster biosynthesis 21 122 7.8E-18 T 23-04-2016 IPR000361 FeS cluster biogenesis RPE_RS14880 3aea6daa9f522decae2948f8811fa507 133 Gene3D G3DSA:2.60.300.12 20 115 5.5E-32 T 23-04-2016 IPR000361 FeS cluster biogenesis RPE_RS14880 3aea6daa9f522decae2948f8811fa507 133 SUPERFAMILY SSF89360 15 112 8.24E-28 T 23-04-2016 IPR000361 FeS cluster biogenesis RPE_RS14880 3aea6daa9f522decae2948f8811fa507 133 PANTHER PTHR10072 15 123 4.4E-46 T 23-04-2016 RPE_RS14880 3aea6daa9f522decae2948f8811fa507 133 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 22 124 1.7E-33 T 23-04-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 RPE_RS17550 4ed7a9933c90635469c53254a16301c2 417 Pfam PF02397 Bacterial sugar transferase 218 411 1.1E-48 T 23-04-2016 IPR003362 Bacterial sugar transferase RPE_RS17550 4ed7a9933c90635469c53254a16301c2 417 PANTHER PTHR30576 169 416 1.6E-78 T 23-04-2016 RPE_RS17550 4ed7a9933c90635469c53254a16301c2 417 PANTHER PTHR30576:SF4 169 416 1.6E-78 T 23-04-2016 RPE_RS14745 78b8a67d41a6e9b5ea6f3e863dc4dc63 613 PANTHER PTHR30255:SF2 22 613 2.9E-188 T 23-04-2016 RPE_RS14745 78b8a67d41a6e9b5ea6f3e863dc4dc63 613 PANTHER PTHR30255 22 613 2.9E-188 T 23-04-2016 RPE_RS14745 78b8a67d41a6e9b5ea6f3e863dc4dc63 613 Pfam PF02272 DHHA1 domain 409 473 6.2E-9 T 23-04-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7 RPE_RS14745 78b8a67d41a6e9b5ea6f3e863dc4dc63 613 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 51 601 4.6E-150 T 23-04-2016 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 RPE_RS14745 78b8a67d41a6e9b5ea6f3e863dc4dc63 613 SUPERFAMILY SSF64182 79 479 6.02E-109 T 23-04-2016 RPE_RS14745 78b8a67d41a6e9b5ea6f3e863dc4dc63 613 Pfam PF01368 DHH family 105 199 1.0E-10 T 23-04-2016 IPR001667 DDH domain RPE_RS23470 64240785d96afac1b4e9b25f239e43b1 105 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 9 99 4.6E-11 T 23-04-2016 IPR008407 Branched-chain amino acid transport, AzlD RPE_RS08220 b467d5c7d5cb1872c91553c25a73cc6e 204 Pfam PF13508 Acetyltransferase (GNAT) domain 63 158 1.0E-8 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RPE_RS08220 b467d5c7d5cb1872c91553c25a73cc6e 204 Gene3D G3DSA:3.40.630.30 45 115 5.2E-5 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS08220 b467d5c7d5cb1872c91553c25a73cc6e 204 SUPERFAMILY SSF55729 49 164 8.97E-12 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS08220 b467d5c7d5cb1872c91553c25a73cc6e 204 Gene3D G3DSA:3.40.630.30 116 185 9.7E-8 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS08220 b467d5c7d5cb1872c91553c25a73cc6e 204 PANTHER PTHR36449 6 185 8.6E-24 T 23-04-2016 RPE_RS14320 6a82ffca1aa4bb5de1b86008421f6257 118 SUPERFAMILY SSF54913 7 108 1.67E-33 T 23-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta RPE_RS14320 6a82ffca1aa4bb5de1b86008421f6257 118 Gene3D G3DSA:3.30.70.120 3 115 5.6E-43 T 23-04-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RPE_RS14320 6a82ffca1aa4bb5de1b86008421f6257 118 Pfam PF02641 Uncharacterized ACR, COG1993 10 107 4.6E-39 T 23-04-2016 IPR003793 Domain of unknown function DUF190 RPE_RS14320 6a82ffca1aa4bb5de1b86008421f6257 118 PANTHER PTHR35983 3 111 8.5E-39 T 23-04-2016 RPE_RS20760 ffbcecf9056dc6c64cc15bb7a11d7991 310 SUPERFAMILY SSF103481 54 157 1.44E-14 T 23-04-2016 RPE_RS20760 ffbcecf9056dc6c64cc15bb7a11d7991 310 PANTHER PTHR12715 5 310 3.9E-97 T 23-04-2016 RPE_RS20760 ffbcecf9056dc6c64cc15bb7a11d7991 310 Pfam PF00892 EamA-like transporter family 21 153 1.0E-22 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RPE_RS20760 ffbcecf9056dc6c64cc15bb7a11d7991 310 Pfam PF00892 EamA-like transporter family 168 302 6.3E-22 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RPE_RS20760 ffbcecf9056dc6c64cc15bb7a11d7991 310 SUPERFAMILY SSF103481 202 306 7.72E-15 T 23-04-2016 RPE_RS20760 ffbcecf9056dc6c64cc15bb7a11d7991 310 PANTHER PTHR12715:SF12 5 310 3.9E-97 T 23-04-2016 RPE_RS02375 9520fc6bed5b681f3eefdb1f82ea00bf 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 1.3E-33 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS02375 9520fc6bed5b681f3eefdb1f82ea00bf 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 155 1.3E-33 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS02375 9520fc6bed5b681f3eefdb1f82ea00bf 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 187 204 1.3E-33 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS02375 9520fc6bed5b681f3eefdb1f82ea00bf 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 1.3E-33 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS02375 9520fc6bed5b681f3eefdb1f82ea00bf 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 99 1.3E-33 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS02375 9520fc6bed5b681f3eefdb1f82ea00bf 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 185 1.3E-33 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS02375 9520fc6bed5b681f3eefdb1f82ea00bf 268 PANTHER PTHR24322:SF513 15 149 5.6E-50 T 23-04-2016 RPE_RS02375 9520fc6bed5b681f3eefdb1f82ea00bf 268 PANTHER PTHR24322:SF513 166 198 5.6E-50 T 23-04-2016 RPE_RS02375 9520fc6bed5b681f3eefdb1f82ea00bf 268 Gene3D G3DSA:3.40.50.720 4 256 3.1E-77 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS02375 9520fc6bed5b681f3eefdb1f82ea00bf 268 PANTHER PTHR24322 15 149 5.6E-50 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS02375 9520fc6bed5b681f3eefdb1f82ea00bf 268 PANTHER PTHR24322 166 198 5.6E-50 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS02375 9520fc6bed5b681f3eefdb1f82ea00bf 268 SUPERFAMILY SSF51735 9 256 2.46E-69 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS02375 9520fc6bed5b681f3eefdb1f82ea00bf 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 185 1.2E-10 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS02375 9520fc6bed5b681f3eefdb1f82ea00bf 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 153 1.2E-10 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS02375 9520fc6bed5b681f3eefdb1f82ea00bf 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 1.2E-10 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS02375 9520fc6bed5b681f3eefdb1f82ea00bf 268 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 255 1.7E-47 T 23-04-2016 RPE_RS10830 dc517a0bd2571a3b500c09f7ccc40f0e 380 Gene3D G3DSA:1.10.443.10 93 302 1.5E-11 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 RPE_RS10830 dc517a0bd2571a3b500c09f7ccc40f0e 380 SUPERFAMILY SSF56349 90 307 1.5E-9 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RPE_RS22670 95693b912be01655924a8fae34ce3ca4 117 Gene3D G3DSA:2.60.300.12 2 95 3.1E-21 T 23-04-2016 IPR000361 FeS cluster biogenesis RPE_RS22670 95693b912be01655924a8fae34ce3ca4 117 PANTHER PTHR10072:SF26 3 101 4.5E-19 T 23-04-2016 RPE_RS22670 95693b912be01655924a8fae34ce3ca4 117 SUPERFAMILY SSF89360 1 95 2.94E-22 T 23-04-2016 IPR000361 FeS cluster biogenesis RPE_RS22670 95693b912be01655924a8fae34ce3ca4 117 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 4 101 5.4E-21 T 23-04-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 RPE_RS22670 95693b912be01655924a8fae34ce3ca4 117 PANTHER PTHR10072 3 101 4.5E-19 T 23-04-2016 RPE_RS22670 95693b912be01655924a8fae34ce3ca4 117 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 100 1.1E-10 T 23-04-2016 IPR000361 FeS cluster biogenesis RPE_RS20580 d14559a5e94f5cfeb561ab5ed8e318d4 148 Pfam PF01575 MaoC like domain 17 119 1.2E-16 T 23-04-2016 IPR002539 MaoC-like domain RPE_RS20580 d14559a5e94f5cfeb561ab5ed8e318d4 148 Gene3D G3DSA:3.10.129.10 3 143 1.5E-38 T 23-04-2016 IPR029069 HotDog domain RPE_RS20580 d14559a5e94f5cfeb561ab5ed8e318d4 148 PANTHER PTHR13078 11 142 3.2E-13 T 23-04-2016 RPE_RS20580 d14559a5e94f5cfeb561ab5ed8e318d4 148 SUPERFAMILY SSF54637 3 144 1.36E-36 T 23-04-2016 IPR029069 HotDog domain RPE_RS04900 99390a4d626d90a3d8b49fc49ea4c0d2 269 SMART SM00460 161 227 1.4E-12 T 23-04-2016 IPR002931 Transglutaminase-like RPE_RS04900 99390a4d626d90a3d8b49fc49ea4c0d2 269 PANTHER PTHR33490:SF3 1 267 9.5E-129 T 23-04-2016 RPE_RS04900 99390a4d626d90a3d8b49fc49ea4c0d2 269 SUPERFAMILY SSF54001 49 254 6.03E-42 T 23-04-2016 RPE_RS04900 99390a4d626d90a3d8b49fc49ea4c0d2 269 Pfam PF01841 Transglutaminase-like superfamily 130 225 1.6E-22 T 23-04-2016 IPR002931 Transglutaminase-like RPE_RS04900 99390a4d626d90a3d8b49fc49ea4c0d2 269 Gene3D G3DSA:3.90.260.10 166 228 9.1E-11 T 23-04-2016 IPR002931 Transglutaminase-like RPE_RS04900 99390a4d626d90a3d8b49fc49ea4c0d2 269 PANTHER PTHR33490 1 267 9.5E-129 T 23-04-2016 RPE_RS15735 19ff2a4e50c07be9ad782447dc55bd12 98 Gene3D G3DSA:4.10.160.10 26 97 1.1E-42 T 23-04-2016 IPR003420 Methanol dehydrogenase, beta subunit GO:0004022|GO:0015946|GO:0055114 KEGG: 00010+1.1.2.7|KEGG: 00625+1.1.2.7|KEGG: 00680+1.1.2.7|MetaCyc: PWY-6966 RPE_RS15735 19ff2a4e50c07be9ad782447dc55bd12 98 Pfam PF02315 Methanol dehydrogenase beta subunit 11 95 1.9E-43 T 23-04-2016 IPR003420 Methanol dehydrogenase, beta subunit GO:0004022|GO:0015946|GO:0055114 KEGG: 00010+1.1.2.7|KEGG: 00625+1.1.2.7|KEGG: 00680+1.1.2.7|MetaCyc: PWY-6966 RPE_RS15735 19ff2a4e50c07be9ad782447dc55bd12 98 SUPERFAMILY SSF48666 26 97 8.89E-38 T 23-04-2016 IPR003420 Methanol dehydrogenase, beta subunit GO:0004022|GO:0015946|GO:0055114 KEGG: 00010+1.1.2.7|KEGG: 00625+1.1.2.7|KEGG: 00680+1.1.2.7|MetaCyc: PWY-6966 RPE_RS15735 19ff2a4e50c07be9ad782447dc55bd12 98 PIRSF PIRSF029163 2 97 6.0E-45 T 23-04-2016 IPR003420 Methanol dehydrogenase, beta subunit GO:0004022|GO:0015946|GO:0055114 KEGG: 00010+1.1.2.7|KEGG: 00625+1.1.2.7|KEGG: 00680+1.1.2.7|MetaCyc: PWY-6966 RPE_RS13580 dbbff922de66d610ca76e9c8fd3e2cd3 129 PANTHER PTHR22894 4 122 2.3E-18 T 23-04-2016 RPE_RS13580 dbbff922de66d610ca76e9c8fd3e2cd3 129 Pfam PF06803 Protein of unknown function (DUF1232) 62 95 1.7E-11 T 23-04-2016 IPR010652 Protein of unknown function DUF1232 UniPathway: UPA00143 RPE_RS13580 dbbff922de66d610ca76e9c8fd3e2cd3 129 PIRSF PIRSF031804 1 125 4.3E-42 T 23-04-2016 IPR016983 Uncharacterised conserved protein UCP031804 RPE_RS14430 3e1dc5a7944844e9ac977c1b1e1e5b4c 532 PANTHER PTHR23508:SF7 433 527 1.7E-204 T 23-04-2016 RPE_RS14430 3e1dc5a7944844e9ac977c1b1e1e5b4c 532 PANTHER PTHR23508:SF7 19 340 1.7E-204 T 23-04-2016 RPE_RS14430 3e1dc5a7944844e9ac977c1b1e1e5b4c 532 SUPERFAMILY SSF103473 411 529 1.11E-8 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS14430 3e1dc5a7944844e9ac977c1b1e1e5b4c 532 PANTHER PTHR23508 433 527 1.7E-204 T 23-04-2016 RPE_RS14430 3e1dc5a7944844e9ac977c1b1e1e5b4c 532 PANTHER PTHR23508 19 340 1.7E-204 T 23-04-2016 RPE_RS14430 3e1dc5a7944844e9ac977c1b1e1e5b4c 532 SUPERFAMILY SSF103473 18 337 8.89E-50 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS14430 3e1dc5a7944844e9ac977c1b1e1e5b4c 532 Gene3D G3DSA:1.20.1250.20 250 338 3.2E-16 T 23-04-2016 RPE_RS14430 3e1dc5a7944844e9ac977c1b1e1e5b4c 532 Gene3D G3DSA:1.20.1250.20 430 526 3.2E-16 T 23-04-2016 RPE_RS14430 3e1dc5a7944844e9ac977c1b1e1e5b4c 532 Gene3D G3DSA:1.20.1250.20 22 223 1.7E-20 T 23-04-2016 RPE_RS14430 3e1dc5a7944844e9ac977c1b1e1e5b4c 532 Pfam PF00083 Sugar (and other) transporter 22 227 1.7E-26 T 23-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RPE_RS14430 3e1dc5a7944844e9ac977c1b1e1e5b4c 532 ProSitePatterns PS00217 Sugar transport proteins signature 2. 131 156 - T 23-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RPE_RS22370 eb260556b1de358d5ecb16810e3965ba 207 TIGRFAM TIGR00172 maf: septum formation protein Maf 6 192 2.5E-42 T 23-04-2016 IPR003697 Maf-like protein GO:0005737 RPE_RS22370 eb260556b1de358d5ecb16810e3965ba 207 Pfam PF02545 Maf-like protein 6 193 1.4E-48 T 23-04-2016 IPR003697 Maf-like protein GO:0005737 RPE_RS22370 eb260556b1de358d5ecb16810e3965ba 207 SUPERFAMILY SSF52972 5 192 1.63E-54 T 23-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like RPE_RS22370 eb260556b1de358d5ecb16810e3965ba 207 Hamap MF_00528 Septum formation protein Maf [maf]. 6 199 30.902 T 23-04-2016 IPR003697 Maf-like protein GO:0005737 RPE_RS22370 eb260556b1de358d5ecb16810e3965ba 207 PIRSF PIRSF006305 1 199 1.9E-45 T 23-04-2016 IPR003697 Maf-like protein GO:0005737 RPE_RS22370 eb260556b1de358d5ecb16810e3965ba 207 Gene3D G3DSA:3.90.950.10 6 196 9.6E-60 T 23-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like RPE_RS22370 eb260556b1de358d5ecb16810e3965ba 207 PANTHER PTHR11746 128 196 2.2E-12 T 23-04-2016 RPE_RS10950 d4b495700c1444047e779b5824b51463 180 Gene3D G3DSA:3.40.1410.10 7 119 4.1E-15 T 23-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain RPE_RS10950 d4b495700c1444047e779b5824b51463 180 SUPERFAMILY SSF64288 8 120 1.41E-13 T 23-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain RPE_RS04275 c2fdd62968f24c97f8a8ba275d314552 264 SUPERFAMILY SSF81296 153 259 1.82E-25 T 23-04-2016 IPR014756 Immunoglobulin E-set RPE_RS04275 c2fdd62968f24c97f8a8ba275d314552 264 Gene3D G3DSA:2.60.40.10 153 259 1.6E-31 T 23-04-2016 IPR013783 Immunoglobulin-like fold RPE_RS04275 c2fdd62968f24c97f8a8ba275d314552 264 Pfam PF08770 Sulphur oxidation protein SoxZ 171 257 2.0E-22 T 23-04-2016 IPR014880 Sulphur oxidation protein SoxZ RPE_RS04275 c2fdd62968f24c97f8a8ba275d314552 264 TIGRFAM TIGR04557 fuse_rel_SoxYZ: quinoprotein dehydrogenase-associated SoxYZ-like carrier 23 254 3.8E-85 T 23-04-2016 IPR030831 Quinoprotein dehydrogenase-associated SoxYZ-like carrier RPE_RS04275 c2fdd62968f24c97f8a8ba275d314552 264 Pfam PF13501 Sulfur oxidation protein SoxY 28 138 1.2E-33 T 23-04-2016 IPR032711 Ig-like SoxY domain RPE_RS19585 ba3b2cbab94a967a9adfa70bfe018715 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 7.9E-39 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS19585 ba3b2cbab94a967a9adfa70bfe018715 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 7.9E-39 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS19585 ba3b2cbab94a967a9adfa70bfe018715 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 7.9E-39 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS19585 ba3b2cbab94a967a9adfa70bfe018715 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 7.9E-39 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS19585 ba3b2cbab94a967a9adfa70bfe018715 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 7.9E-39 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS19585 ba3b2cbab94a967a9adfa70bfe018715 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 7.9E-39 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS19585 ba3b2cbab94a967a9adfa70bfe018715 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 4.3E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS19585 ba3b2cbab94a967a9adfa70bfe018715 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 4.3E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS19585 ba3b2cbab94a967a9adfa70bfe018715 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 4.3E-12 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS19585 ba3b2cbab94a967a9adfa70bfe018715 253 PANTHER PTHR24322 159 191 3.2E-52 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS19585 ba3b2cbab94a967a9adfa70bfe018715 253 PANTHER PTHR24322 14 143 3.2E-52 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS19585 ba3b2cbab94a967a9adfa70bfe018715 253 Gene3D G3DSA:3.40.50.720 6 251 7.5E-79 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS19585 ba3b2cbab94a967a9adfa70bfe018715 253 SUPERFAMILY SSF51735 5 252 2.77E-75 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS19585 ba3b2cbab94a967a9adfa70bfe018715 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 250 2.5E-57 T 23-04-2016 RPE_RS01370 c977526223ec9b41c2d5e370411f13a4 403 Pfam PF04748 Divergent polysaccharide deacetylase 183 395 1.7E-62 T 23-04-2016 IPR006837 Protein of unknown function DUF610, YibQ RPE_RS01370 c977526223ec9b41c2d5e370411f13a4 403 PANTHER PTHR30105 50 401 9.4E-72 T 23-04-2016 RPE_RS01370 c977526223ec9b41c2d5e370411f13a4 403 Gene3D G3DSA:3.20.20.370 174 397 1.5E-67 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RPE_RS01370 c977526223ec9b41c2d5e370411f13a4 403 SUPERFAMILY SSF88713 179 394 6.89E-59 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RPE_RS12710 4dc3e6eba312807b6de5187305572670 102 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 3 102 19.448 T 23-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 RPE_RS12710 4dc3e6eba312807b6de5187305572670 102 PANTHER PTHR11434 5 102 7.7E-41 T 23-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 RPE_RS12710 4dc3e6eba312807b6de5187305572670 102 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 8 97 2.6E-24 T 23-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 RPE_RS03110 fe544243a79d51e3a488b366e5323c17 97 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 16 81 9.8E-9 T 23-04-2016 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 RPE_RS17285 1b00af1e22c1cd26b049c50862d537b8 454 SUPERFAMILY SSF55874 293 446 4.58E-31 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS17285 1b00af1e22c1cd26b049c50862d537b8 454 PANTHER PTHR24423:SF399 6 15 2.5E-62 T 23-04-2016 RPE_RS17285 1b00af1e22c1cd26b049c50862d537b8 454 PANTHER PTHR24423:SF399 186 440 2.5E-62 T 23-04-2016 RPE_RS17285 1b00af1e22c1cd26b049c50862d537b8 454 SMART SM00387 348 451 3.0E-29 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS17285 1b00af1e22c1cd26b049c50862d537b8 454 PANTHER PTHR24423 6 15 2.5E-62 T 23-04-2016 RPE_RS17285 1b00af1e22c1cd26b049c50862d537b8 454 PANTHER PTHR24423 186 440 2.5E-62 T 23-04-2016 RPE_RS17285 1b00af1e22c1cd26b049c50862d537b8 454 Pfam PF00512 His Kinase A (phospho-acceptor) domain 247 303 1.2E-6 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS17285 1b00af1e22c1cd26b049c50862d537b8 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 381 395 4.9E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS17285 1b00af1e22c1cd26b049c50862d537b8 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 399 409 4.9E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS17285 1b00af1e22c1cd26b049c50862d537b8 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 412 430 4.9E-11 T 23-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RPE_RS17285 1b00af1e22c1cd26b049c50862d537b8 454 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 348 440 2.3E-17 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS17285 1b00af1e22c1cd26b049c50862d537b8 454 SMART SM00388 246 304 9.7E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS17285 1b00af1e22c1cd26b049c50862d537b8 454 Gene3D G3DSA:3.30.565.10 310 445 3.0E-30 T 23-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RPE_RS17285 1b00af1e22c1cd26b049c50862d537b8 454 Gene3D G3DSA:1.10.287.130 238 300 3.1E-9 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS17285 1b00af1e22c1cd26b049c50862d537b8 454 SUPERFAMILY SSF47384 229 302 3.92E-11 T 23-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RPE_RS05665 ed629e950879c6dc7b5986763bc9ab12 365 Gene3D G3DSA:1.10.10.10 301 361 1.5E-12 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS05665 ed629e950879c6dc7b5986763bc9ab12 365 SMART SM00421 303 360 1.2E-10 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS05665 ed629e950879c6dc7b5986763bc9ab12 365 Pfam PF00196 Bacterial regulatory proteins, luxR family 305 358 2.7E-8 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS05665 ed629e950879c6dc7b5986763bc9ab12 365 SUPERFAMILY SSF46894 296 362 7.14E-13 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RPE_RS07425 de94e531705c9d3fd54335b6201608c5 124 SUPERFAMILY SSF47226 21 118 1.01E-19 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS07425 de94e531705c9d3fd54335b6201608c5 124 Gene3D G3DSA:1.20.120.160 14 120 2.7E-25 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS07425 de94e531705c9d3fd54335b6201608c5 124 Pfam PF01627 Hpt domain 40 115 4.0E-7 T 23-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 RPE_RS10975 c083582775f0c98f85f4ce83a915263a 329 Gene3D G3DSA:3.40.50.1100 71 311 6.7E-56 T 23-04-2016 RPE_RS10975 c083582775f0c98f85f4ce83a915263a 329 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 21 303 5.0E-67 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RPE_RS10975 c083582775f0c98f85f4ce83a915263a 329 PANTHER PTHR10314 1 315 1.7E-96 T 23-04-2016 RPE_RS10975 c083582775f0c98f85f4ce83a915263a 329 SUPERFAMILY SSF53686 9 313 1.44E-78 T 23-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RPE_RS10975 c083582775f0c98f85f4ce83a915263a 329 PANTHER PTHR10314:SF17 1 315 1.7E-96 T 23-04-2016 RPE_RS22675 212d8953a1114534a46a2aeee30732cc 74 Gene3D G3DSA:3.30.70.20 5 58 3.6E-12 T 23-04-2016 RPE_RS22675 212d8953a1114534a46a2aeee30732cc 74 Pfam PF00037 4Fe-4S binding domain 4 25 1.6E-5 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RPE_RS22675 212d8953a1114534a46a2aeee30732cc 74 SUPERFAMILY SSF54862 6 60 2.35E-13 T 23-04-2016 RPE_RS22675 212d8953a1114534a46a2aeee30732cc 74 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 10 21 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RPE_RS17990 e044fb740d7adeede33e43ad3b9c51a7 123 Gene3D G3DSA:2.40.50.140 1 123 2.0E-64 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS17990 e044fb740d7adeede33e43ad3b9c51a7 123 SUPERFAMILY SSF50249 2 123 6.77E-52 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS17990 e044fb740d7adeede33e43ad3b9c51a7 123 PIRSF PIRSF002133 1 123 8.8E-54 T 23-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17990 e044fb740d7adeede33e43ad3b9c51a7 123 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 38.747 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RPE_RS17990 e044fb740d7adeede33e43ad3b9c51a7 123 PANTHER PTHR11652 1 116 4.1E-71 T 23-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17990 e044fb740d7adeede33e43ad3b9c51a7 123 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 23-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17990 e044fb740d7adeede33e43ad3b9c51a7 123 Pfam PF00164 Ribosomal protein S12/S23 14 123 1.0E-41 T 23-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17990 e044fb740d7adeede33e43ad3b9c51a7 123 PRINTS PR01034 Ribosomal protein S12 signature 58 77 5.0E-60 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RPE_RS17990 e044fb740d7adeede33e43ad3b9c51a7 123 PRINTS PR01034 Ribosomal protein S12 signature 42 57 5.0E-60 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RPE_RS17990 e044fb740d7adeede33e43ad3b9c51a7 123 PRINTS PR01034 Ribosomal protein S12 signature 27 42 5.0E-60 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RPE_RS17990 e044fb740d7adeede33e43ad3b9c51a7 123 PRINTS PR01034 Ribosomal protein S12 signature 77 94 5.0E-60 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RPE_RS17990 e044fb740d7adeede33e43ad3b9c51a7 123 PRINTS PR01034 Ribosomal protein S12 signature 110 122 5.0E-60 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RPE_RS17990 e044fb740d7adeede33e43ad3b9c51a7 123 PRINTS PR01034 Ribosomal protein S12 signature 94 110 5.0E-60 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RPE_RS17990 e044fb740d7adeede33e43ad3b9c51a7 123 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 123 8.2E-67 T 23-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RPE_RS20500 3203c5fdada487ac716bef8e8f5e999b 635 Pfam PF08439 Oligopeptidase F 157 226 2.1E-19 T 23-04-2016 IPR013647 Oligopeptidase F, N-terminal domain RPE_RS20500 3203c5fdada487ac716bef8e8f5e999b 635 Pfam PF01432 Peptidase family M3 379 617 5.1E-36 T 23-04-2016 IPR001567 Peptidase M3A/M3B GO:0004222|GO:0006508 RPE_RS20500 3203c5fdada487ac716bef8e8f5e999b 635 SUPERFAMILY SSF55486 47 618 2.93E-113 T 23-04-2016 RPE_RS20500 3203c5fdada487ac716bef8e8f5e999b 635 Gene3D G3DSA:3.40.390.10 381 463 2.2E-5 T 23-04-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 RPE_RS20500 3203c5fdada487ac716bef8e8f5e999b 635 TIGRFAM TIGR02290 M3_fam_3: oligoendopeptidase, pepF/M3 family 49 634 1.2E-198 T 23-04-2016 IPR011977 Peptidase M3B, oligoendopeptidase-related clade 3 RPE_RS20500 3203c5fdada487ac716bef8e8f5e999b 635 PANTHER PTHR11804 232 634 3.2E-81 T 23-04-2016 RPE_RS20500 3203c5fdada487ac716bef8e8f5e999b 635 PANTHER PTHR11804:SF8 232 634 3.2E-81 T 23-04-2016 RPE_RS00550 63528b857b2ba880f339c463466b7f2f 540 PANTHER PTHR11938:SF50 166 540 1.4E-97 T 23-04-2016 RPE_RS00550 63528b857b2ba880f339c463466b7f2f 540 PANTHER PTHR11938 166 540 1.4E-97 T 23-04-2016 RPE_RS00550 63528b857b2ba880f339c463466b7f2f 540 SUPERFAMILY SSF51395 35 510 6.28E-135 T 23-04-2016 RPE_RS00550 63528b857b2ba880f339c463466b7f2f 540 Gene3D G3DSA:3.20.20.70 57 509 1.3E-119 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS00550 63528b857b2ba880f339c463466b7f2f 540 Pfam PF01645 Conserved region in glutamate synthase 164 481 4.0E-85 T 23-04-2016 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 RPE_RS00550 63528b857b2ba880f339c463466b7f2f 540 PIRSF PIRSF006429 19 540 5.9E-161 T 23-04-2016 IPR024188 Glutamate synthase large subunit-like protein RPE_RS00550 63528b857b2ba880f339c463466b7f2f 540 PIRSF PIRSF500060 15 537 3.3E-235 T 23-04-2016 IPR027283 Glutamate synthase large subunit-like protein, bacteria RPE_RS02015 ea57b8f7c839f4447316a2ae1d8bbe0b 480 Gene3D G3DSA:1.10.3430.10 28 458 5.6E-140 T 23-04-2016 IPR029020 Ammonium/urea transporter RPE_RS02015 ea57b8f7c839f4447316a2ae1d8bbe0b 480 ProSitePatterns PS01219 Ammonium transporters signature. 227 252 - T 23-04-2016 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 RPE_RS02015 ea57b8f7c839f4447316a2ae1d8bbe0b 480 Pfam PF00909 Ammonium Transporter Family 36 478 1.9E-106 T 23-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 RPE_RS02015 ea57b8f7c839f4447316a2ae1d8bbe0b 480 TIGRFAM TIGR00836 amt: ammonium transporter 34 478 1.1E-121 T 23-04-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 RPE_RS02015 ea57b8f7c839f4447316a2ae1d8bbe0b 480 SUPERFAMILY SSF111352 218 458 3.01E-119 T 23-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 RPE_RS02015 ea57b8f7c839f4447316a2ae1d8bbe0b 480 SUPERFAMILY SSF111352 30 183 3.01E-119 T 23-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 RPE_RS02015 ea57b8f7c839f4447316a2ae1d8bbe0b 480 PANTHER PTHR11730:SF17 27 182 2.3E-168 T 23-04-2016 RPE_RS02015 ea57b8f7c839f4447316a2ae1d8bbe0b 480 PANTHER PTHR11730:SF17 218 479 2.3E-168 T 23-04-2016 RPE_RS02015 ea57b8f7c839f4447316a2ae1d8bbe0b 480 PANTHER PTHR11730 27 182 2.3E-168 T 23-04-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 RPE_RS02015 ea57b8f7c839f4447316a2ae1d8bbe0b 480 PANTHER PTHR11730 218 479 2.3E-168 T 23-04-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 RPE_RS13505 f9ff5044ae444f7b125c25c860480448 463 SUPERFAMILY SSF110997 380 460 7.06E-9 T 23-04-2016 IPR007730 Sporulation-related domain GO:0042834 RPE_RS13505 f9ff5044ae444f7b125c25c860480448 463 Pfam PF05036 Sporulation related domain 380 461 1.2E-14 T 23-04-2016 IPR007730 Sporulation-related domain GO:0042834 RPE_RS13505 f9ff5044ae444f7b125c25c860480448 463 Gene3D G3DSA:3.30.70.1070 377 460 5.7E-7 T 23-04-2016 IPR007730 Sporulation-related domain GO:0042834 RPE_RS20220 5cd37aa4b46e4b316bc81a2fc7377110 128 PANTHER PTHR32294 2 67 1.1E-17 T 23-04-2016 RPE_RS20220 5cd37aa4b46e4b316bc81a2fc7377110 128 PANTHER PTHR32294:SF4 2 67 1.1E-17 T 23-04-2016 RPE_RS07480 e812d48844311c89b77de593c3aa4e27 669 SUPERFAMILY SSF52266 608 639 1.59E-10 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain RPE_RS07480 e812d48844311c89b77de593c3aa4e27 669 SUPERFAMILY SSF52266 210 226 1.59E-10 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain RPE_RS07480 e812d48844311c89b77de593c3aa4e27 669 SUPERFAMILY SSF52266 274 532 1.59E-10 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain RPE_RS07480 e812d48844311c89b77de593c3aa4e27 669 Gene3D G3DSA:3.40.50.1110 210 221 4.7E-28 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain RPE_RS07480 e812d48844311c89b77de593c3aa4e27 669 Gene3D G3DSA:3.40.50.1110 269 537 4.7E-28 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain RPE_RS07480 e812d48844311c89b77de593c3aa4e27 669 Gene3D G3DSA:3.40.50.1110 604 639 4.7E-28 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain RPE_RS22060 dd768d4a9a520fd774a9ae8ad83ec4b1 75 Gene3D G3DSA:3.30.70.790 2 73 1.6E-33 T 23-04-2016 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 RPE_RS22060 dd768d4a9a520fd774a9ae8ad83ec4b1 75 SUPERFAMILY SSF54913 2 73 1.16E-23 T 23-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta RPE_RS22060 dd768d4a9a520fd774a9ae8ad83ec4b1 75 Pfam PF09413 Putative prokaryotic signal transducing protein 2 65 2.3E-17 T 23-04-2016 IPR018551 Domain of unknown function DUF2007 RPE_RS03715 1bc36597df5fadfd5c12e8b97eec68fe 371 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 150 230 1.9E-19 T 23-04-2016 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 RPE_RS03715 1bc36597df5fadfd5c12e8b97eec68fe 371 PANTHER PTHR34069:SF1 1 25 1.3E-156 T 23-04-2016 RPE_RS03715 1bc36597df5fadfd5c12e8b97eec68fe 371 PANTHER PTHR34069:SF1 50 70 1.3E-156 T 23-04-2016 RPE_RS03715 1bc36597df5fadfd5c12e8b97eec68fe 371 Gene3D G3DSA:3.40.47.10 3 205 4.3E-49 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS03715 1bc36597df5fadfd5c12e8b97eec68fe 371 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 147 163 - T 23-04-2016 IPR018201 Beta-ketoacyl synthase, active site RPE_RS03715 1bc36597df5fadfd5c12e8b97eec68fe 371 SUPERFAMILY SSF53901 3 370 4.88E-48 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS03715 1bc36597df5fadfd5c12e8b97eec68fe 371 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 283 369 3.0E-18 T 23-04-2016 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 RPE_RS03715 1bc36597df5fadfd5c12e8b97eec68fe 371 PANTHER PTHR34069:SF1 91 369 1.3E-156 T 23-04-2016 RPE_RS03715 1bc36597df5fadfd5c12e8b97eec68fe 371 PANTHER PTHR34069 91 369 1.3E-156 T 23-04-2016 RPE_RS03715 1bc36597df5fadfd5c12e8b97eec68fe 371 Gene3D G3DSA:3.40.47.10 206 369 1.7E-24 T 23-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RPE_RS03715 1bc36597df5fadfd5c12e8b97eec68fe 371 PANTHER PTHR34069 1 25 1.3E-156 T 23-04-2016 RPE_RS03715 1bc36597df5fadfd5c12e8b97eec68fe 371 PANTHER PTHR34069 50 70 1.3E-156 T 23-04-2016 RPE_RS06940 0cdd40f7e79ad9411fabf541a7dd4d08 514 PANTHER PTHR11985 1 497 1.5E-176 T 23-04-2016 RPE_RS06940 0cdd40f7e79ad9411fabf541a7dd4d08 514 SUPERFAMILY SSF54373 231 324 7.65E-8 T 23-04-2016 RPE_RS06940 0cdd40f7e79ad9411fabf541a7dd4d08 514 Gene3D G3DSA:3.50.50.60 5 245 8.4E-36 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS06940 0cdd40f7e79ad9411fabf541a7dd4d08 514 SUPERFAMILY SSF51905 5 265 2.16E-35 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS06940 0cdd40f7e79ad9411fabf541a7dd4d08 514 SUPERFAMILY SSF51905 317 380 2.16E-35 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS06940 0cdd40f7e79ad9411fabf541a7dd4d08 514 PANTHER PTHR11985:SF1 1 497 1.5E-176 T 23-04-2016 RPE_RS06940 0cdd40f7e79ad9411fabf541a7dd4d08 514 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 79 91 2.0E-28 T 23-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RPE_RS06940 0cdd40f7e79ad9411fabf541a7dd4d08 514 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 318 324 2.0E-28 T 23-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RPE_RS06940 0cdd40f7e79ad9411fabf541a7dd4d08 514 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 5 17 2.0E-28 T 23-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RPE_RS06940 0cdd40f7e79ad9411fabf541a7dd4d08 514 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 34 46 2.0E-28 T 23-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RPE_RS06940 0cdd40f7e79ad9411fabf541a7dd4d08 514 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 18 28 2.0E-28 T 23-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RPE_RS06940 0cdd40f7e79ad9411fabf541a7dd4d08 514 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 352 364 2.0E-28 T 23-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RPE_RS06940 0cdd40f7e79ad9411fabf541a7dd4d08 514 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 10 27 - T 23-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RPE_RS06940 0cdd40f7e79ad9411fabf541a7dd4d08 514 Pfam PF01266 FAD dependent oxidoreductase 6 328 1.5E-48 T 23-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RPE_RS06940 0cdd40f7e79ad9411fabf541a7dd4d08 514 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 388 487 3.2E-11 T 23-04-2016 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RPE_RS06940 0cdd40f7e79ad9411fabf541a7dd4d08 514 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 357 367 - T 23-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 RPE_RS08010 c485e735a18ded3b0b6ed3a19a66d01c 373 Pfam PF10546 P63C domain 205 297 1.1E-31 T 23-04-2016 IPR018874 Bacteriophage Mx8, p63, C-terminal RPE_RS19205 ac99182ee3d5f06ad81d149b7c493da5 413 Gene3D G3DSA:1.20.1250.20 219 402 2.2E-16 T 23-04-2016 RPE_RS19205 ac99182ee3d5f06ad81d149b7c493da5 413 Gene3D G3DSA:1.20.1250.20 11 204 1.0E-26 T 23-04-2016 RPE_RS19205 ac99182ee3d5f06ad81d149b7c493da5 413 PANTHER PTHR11360 7 404 3.0E-118 T 23-04-2016 RPE_RS19205 ac99182ee3d5f06ad81d149b7c493da5 413 Pfam PF07690 Major Facilitator Superfamily 20 360 2.6E-29 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RPE_RS19205 ac99182ee3d5f06ad81d149b7c493da5 413 PANTHER PTHR11360:SF115 7 404 3.0E-118 T 23-04-2016 RPE_RS19205 ac99182ee3d5f06ad81d149b7c493da5 413 SUPERFAMILY SSF103473 7 401 7.59E-54 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS08245 19ae6b1e73b8aeff3fffe01822242f40 207 PANTHER PTHR36930:SF1 12 206 1.3E-43 T 23-04-2016 RPE_RS08245 19ae6b1e73b8aeff3fffe01822242f40 207 Pfam PF03473 MOSC domain 84 193 1.6E-5 T 23-04-2016 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 RPE_RS08245 19ae6b1e73b8aeff3fffe01822242f40 207 Gene3D G3DSA:2.40.33.20 29 207 1.9E-65 T 23-04-2016 IPR015808 Molybdenum cofactor sulfurase, C-terminal-like RPE_RS08245 19ae6b1e73b8aeff3fffe01822242f40 207 PANTHER PTHR36930 12 206 1.3E-43 T 23-04-2016 RPE_RS08245 19ae6b1e73b8aeff3fffe01822242f40 207 SUPERFAMILY SSF50800 27 197 1.99E-40 T 23-04-2016 IPR011037 Pyruvate kinase-like, insert domain RPE_RS08530 23fe9daf1171815f4cc3f90c8480eec1 326 Pfam PF02653 Branched-chain amino acid transport system / permease component 35 305 1.9E-38 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RPE_RS08530 23fe9daf1171815f4cc3f90c8480eec1 326 PANTHER PTHR30482 1 321 8.5E-115 T 23-04-2016 RPE_RS08530 23fe9daf1171815f4cc3f90c8480eec1 326 PANTHER PTHR30482:SF1 1 321 8.5E-115 T 23-04-2016 RPE_RS02995 b219f6dc8b8d427d45dd90301451fc4f 174 Gene3D G3DSA:1.20.1260.10 11 156 1.2E-37 T 23-04-2016 IPR012347 Ferritin-related RPE_RS02995 b219f6dc8b8d427d45dd90301451fc4f 174 SUPERFAMILY SSF47240 11 158 1.69E-32 T 23-04-2016 IPR009078 Ferritin-like superfamily RPE_RS02995 b219f6dc8b8d427d45dd90301451fc4f 174 Pfam PF02915 Rubrerythrin 14 65 2.4E-8 T 23-04-2016 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 RPE_RS20955 3e15a40447805f5b3822472ca12657d1 98 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 13 89 7.2E-10 T 23-04-2016 IPR009241 Toxin HigB-like RPE_RS20955 3e15a40447805f5b3822472ca12657d1 98 PIRSF PIRSF028744 1 98 5.5E-41 T 23-04-2016 IPR014056 Addiction module killer protein, predicted RPE_RS20955 3e15a40447805f5b3822472ca12657d1 98 TIGRFAM TIGR02683 upstrm_HI1419: putative addiction module killer protein 3 95 1.6E-40 T 23-04-2016 IPR014056 Addiction module killer protein, predicted RPE_RS20955 3e15a40447805f5b3822472ca12657d1 98 PANTHER PTHR41791:SF1 1 98 1.8E-29 T 23-04-2016 RPE_RS20955 3e15a40447805f5b3822472ca12657d1 98 PANTHER PTHR41791 1 98 1.8E-29 T 23-04-2016 RPE_RS18775 2f5fd15cca0cf4e86c2c5799b85eabbf 489 Pfam PF00437 Type II/IV secretion system protein 133 408 7.7E-82 T 23-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 RPE_RS18775 2f5fd15cca0cf4e86c2c5799b85eabbf 489 Gene3D G3DSA:3.30.450.90 129 226 4.9E-36 T 23-04-2016 RPE_RS18775 2f5fd15cca0cf4e86c2c5799b85eabbf 489 PANTHER PTHR30258 58 476 8.1E-149 T 23-04-2016 RPE_RS18775 2f5fd15cca0cf4e86c2c5799b85eabbf 489 SUPERFAMILY SSF52540 113 423 1.4E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18775 2f5fd15cca0cf4e86c2c5799b85eabbf 489 Gene3D G3DSA:3.40.50.300 230 448 2.5E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18775 2f5fd15cca0cf4e86c2c5799b85eabbf 489 PANTHER PTHR30258:SF3 58 476 8.1E-149 T 23-04-2016 RPE_RS00675 0e04fe07726465a9a6525c8daa500e7d 164 Pfam PF01724 Domain of unknown function DUF29 21 151 2.4E-44 T 23-04-2016 IPR002636 Protein from unkown function DUF29 RPE_RS00675 0e04fe07726465a9a6525c8daa500e7d 164 PANTHER PTHR34235 10 151 6.0E-43 T 23-04-2016 RPE_RS00675 0e04fe07726465a9a6525c8daa500e7d 164 PANTHER PTHR34235:SF3 10 151 6.0E-43 T 23-04-2016 RPE_RS10085 0c3b472033940385fab140e9e785b1c7 257 PANTHER PTHR30433:SF2 2 255 4.3E-114 T 23-04-2016 IPR022522 Flagellar motor stator, MotA RPE_RS10085 0c3b472033940385fab140e9e785b1c7 257 PANTHER PTHR30433 2 255 4.3E-114 T 23-04-2016 RPE_RS10085 0c3b472033940385fab140e9e785b1c7 257 Pfam PF01618 MotA/TolQ/ExbB proton channel family 101 213 1.1E-21 T 23-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 RPE_RS10085 0c3b472033940385fab140e9e785b1c7 257 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 183 200 - T 23-04-2016 IPR000540 Flagellar motor protein MotA, conserved site RPE_RS13975 1b6b2f2b0e985092c377d59efe1e3641 552 SUPERFAMILY SSF51445 31 321 5.59E-53 T 23-04-2016 IPR017853 Glycoside hydrolase superfamily RPE_RS13975 1b6b2f2b0e985092c377d59efe1e3641 552 ProSitePatterns PS00587 Glycosyl hydrolases family 17 signature. 242 255 - T 23-04-2016 IPR000490 Glycoside hydrolase family 17 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.39 RPE_RS13975 1b6b2f2b0e985092c377d59efe1e3641 552 PANTHER PTHR16631 13 332 1.0E-166 T 23-04-2016 RPE_RS13975 1b6b2f2b0e985092c377d59efe1e3641 552 PANTHER PTHR16631:SF5 13 332 1.0E-166 T 23-04-2016 RPE_RS13975 1b6b2f2b0e985092c377d59efe1e3641 552 Gene3D G3DSA:3.20.20.80 72 321 7.6E-26 T 23-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 RPE_RS22365 ef73f946982a6ac29f993bcd274eb6ef 61 PANTHER PTHR36150 9 59 2.4E-16 T 23-04-2016 RPE_RS22365 ef73f946982a6ac29f993bcd274eb6ef 61 Pfam PF03884 Domain of unknown function (DUF329) 15 59 1.4E-16 T 23-04-2016 IPR005584 DNA gyrase inhibitor YacG GO:0008270 RPE_RS22365 ef73f946982a6ac29f993bcd274eb6ef 61 Gene3D G3DSA:3.30.50.10 12 60 5.1E-21 T 23-04-2016 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 RPE_RS22365 ef73f946982a6ac29f993bcd274eb6ef 61 PANTHER PTHR36150:SF1 9 59 2.4E-16 T 23-04-2016 RPE_RS22365 ef73f946982a6ac29f993bcd274eb6ef 61 SUPERFAMILY SSF57716 13 59 3.85E-16 T 23-04-2016 RPE_RS22365 ef73f946982a6ac29f993bcd274eb6ef 61 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 10 61 17.296 T 23-04-2016 IPR005584 DNA gyrase inhibitor YacG GO:0008270 RPE_RS02380 79a2a1d74f1b4963fc7107ada1d7ea3f 305 SUPERFAMILY SSF52540 123 287 1.41E-22 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02380 79a2a1d74f1b4963fc7107ada1d7ea3f 305 Pfam PF13560 Helix-turn-helix domain 14 72 1.2E-11 T 23-04-2016 RPE_RS02380 79a2a1d74f1b4963fc7107ada1d7ea3f 305 SMART SM00530 18 73 2.1E-11 T 23-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RPE_RS02380 79a2a1d74f1b4963fc7107ada1d7ea3f 305 Pfam PF01202 Shikimate kinase 130 286 6.3E-40 T 23-04-2016 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 RPE_RS02380 79a2a1d74f1b4963fc7107ada1d7ea3f 305 Gene3D G3DSA:1.10.260.40 9 79 1.9E-16 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS02380 79a2a1d74f1b4963fc7107ada1d7ea3f 305 Hamap MF_00109 Shikimate kinase [aroK]. 121 288 23.004 T 23-04-2016 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 RPE_RS02380 79a2a1d74f1b4963fc7107ada1d7ea3f 305 PANTHER PTHR21087:SF0 111 287 3.4E-42 T 23-04-2016 RPE_RS02380 79a2a1d74f1b4963fc7107ada1d7ea3f 305 ProSitePatterns PS01128 Shikimate kinase signature. 177 203 - T 23-04-2016 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 RPE_RS02380 79a2a1d74f1b4963fc7107ada1d7ea3f 305 PRINTS PR01100 Shikimate kinase family signature 176 184 6.1E-17 T 23-04-2016 RPE_RS02380 79a2a1d74f1b4963fc7107ada1d7ea3f 305 PRINTS PR01100 Shikimate kinase family signature 124 139 6.1E-17 T 23-04-2016 RPE_RS02380 79a2a1d74f1b4963fc7107ada1d7ea3f 305 PRINTS PR01100 Shikimate kinase family signature 195 204 6.1E-17 T 23-04-2016 RPE_RS02380 79a2a1d74f1b4963fc7107ada1d7ea3f 305 PRINTS PR01100 Shikimate kinase family signature 148 161 6.1E-17 T 23-04-2016 RPE_RS02380 79a2a1d74f1b4963fc7107ada1d7ea3f 305 PRINTS PR01100 Shikimate kinase family signature 216 233 6.1E-17 T 23-04-2016 RPE_RS02380 79a2a1d74f1b4963fc7107ada1d7ea3f 305 Gene3D G3DSA:3.40.50.300 124 288 8.2E-44 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS02380 79a2a1d74f1b4963fc7107ada1d7ea3f 305 PANTHER PTHR21087 111 287 3.4E-42 T 23-04-2016 RPE_RS02380 79a2a1d74f1b4963fc7107ada1d7ea3f 305 SUPERFAMILY SSF47413 8 77 5.07E-15 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS12520 a2d9c6621d8183274755c88c08c69763 752 PANTHER PTHR33840 1 436 2.0E-67 T 23-04-2016 RPE_RS12520 a2d9c6621d8183274755c88c08c69763 752 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 2 260 4.5E-57 T 23-04-2016 IPR018712 Domain of unknown function DUF2235 RPE_RS12520 a2d9c6621d8183274755c88c08c69763 752 PANTHER PTHR33840:SF4 1 436 2.0E-67 T 23-04-2016 RPE_RS03220 5abb217b897b855819edc9886a3507e1 626 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 399 603 4.8E-69 T 23-04-2016 IPR028055 Membrane insertase YidC/Oxa1, C-terminal RPE_RS03220 5abb217b897b855819edc9886a3507e1 626 Pfam PF14849 YidC periplasmic domain 100 387 1.2E-84 T 23-04-2016 IPR028053 Membrane insertase YidC, N-terminal RPE_RS03220 5abb217b897b855819edc9886a3507e1 626 PANTHER PTHR12428 371 509 1.3E-75 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RPE_RS03220 5abb217b897b855819edc9886a3507e1 626 PANTHER PTHR12428 531 608 1.3E-75 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RPE_RS03220 5abb217b897b855819edc9886a3507e1 626 PANTHER PTHR12428:SF14 371 509 1.3E-75 T 23-04-2016 RPE_RS03220 5abb217b897b855819edc9886a3507e1 626 PANTHER PTHR12428:SF14 531 608 1.3E-75 T 23-04-2016 RPE_RS03220 5abb217b897b855819edc9886a3507e1 626 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 5 605 22.786 T 23-04-2016 IPR019998 Membrane insertase YidC GO:0016021|GO:0051205 RPE_RS03220 5abb217b897b855819edc9886a3507e1 626 Pfam PF02096 60Kd inner membrane protein 400 603 8.1E-59 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RPE_RS03220 5abb217b897b855819edc9886a3507e1 626 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 4 398 2.7E-86 T 23-04-2016 IPR028053 Membrane insertase YidC, N-terminal RPE_RS03220 5abb217b897b855819edc9886a3507e1 626 PRINTS PR00701 60kDa inner membrane protein signature 370 390 3.2E-15 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RPE_RS03220 5abb217b897b855819edc9886a3507e1 626 PRINTS PR00701 60kDa inner membrane protein signature 461 484 3.2E-15 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RPE_RS03220 5abb217b897b855819edc9886a3507e1 626 PRINTS PR00701 60kDa inner membrane protein signature 3 24 3.2E-15 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RPE_RS03220 5abb217b897b855819edc9886a3507e1 626 PRINTS PR01900 YidC translocation/secretion protein signature 385 401 4.6E-22 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RPE_RS03220 5abb217b897b855819edc9886a3507e1 626 PRINTS PR01900 YidC translocation/secretion protein signature 539 554 4.6E-22 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RPE_RS03220 5abb217b897b855819edc9886a3507e1 626 PRINTS PR01900 YidC translocation/secretion protein signature 558 582 4.6E-22 T 23-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RPE_RS03440 9834e9c498189019bb328dd3d06e627b 498 Pfam PF02743 Cache domain 46 237 6.5E-15 T 23-04-2016 IPR033479 Double Cache domain 1 RPE_RS03440 9834e9c498189019bb328dd3d06e627b 498 SMART SM00267 318 488 1.5E-60 T 23-04-2016 IPR000160 GGDEF domain RPE_RS03440 9834e9c498189019bb328dd3d06e627b 498 Pfam PF00990 Diguanylate cyclase, GGDEF domain 330 483 3.7E-43 T 23-04-2016 IPR000160 GGDEF domain RPE_RS03440 9834e9c498189019bb328dd3d06e627b 498 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 325 487 6.0E-48 T 23-04-2016 IPR000160 GGDEF domain RPE_RS03440 9834e9c498189019bb328dd3d06e627b 498 Gene3D G3DSA:3.30.450.20 96 174 2.5E-4 T 23-04-2016 RPE_RS03440 9834e9c498189019bb328dd3d06e627b 498 Gene3D G3DSA:3.30.450.20 175 237 6.0E-7 T 23-04-2016 RPE_RS03440 9834e9c498189019bb328dd3d06e627b 498 Gene3D G3DSA:3.30.70.270 331 488 1.6E-50 T 23-04-2016 RPE_RS03440 9834e9c498189019bb328dd3d06e627b 498 SUPERFAMILY SSF55073 334 487 7.14E-44 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS03440 9834e9c498189019bb328dd3d06e627b 498 PANTHER PTHR10799 216 483 6.6E-30 T 23-04-2016 RPE_RS03440 9834e9c498189019bb328dd3d06e627b 498 PANTHER PTHR10799:SF750 216 483 6.6E-30 T 23-04-2016 RPE_RS11980 1fcb4c7248528b99d24d96d4054b5234 295 SUPERFAMILY SSF51735 3 160 6.99E-44 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS11980 1fcb4c7248528b99d24d96d4054b5234 295 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 162 289 3.6E-40 T 23-04-2016 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 RPE_RS11980 1fcb4c7248528b99d24d96d4054b5234 295 PIRSF PIRSF000103 1 295 9.7E-79 T 23-04-2016 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 RPE_RS11980 1fcb4c7248528b99d24d96d4054b5234 295 TIGRFAM TIGR01692 HIBADH: 3-hydroxyisobutyrate dehydrogenase 6 290 1.1E-129 T 23-04-2016 IPR011548 3-hydroxyisobutyrate dehydrogenase GO:0008442|GO:0051287|GO:0055114 KEGG: 00280+1.1.1.31|UniPathway: UPA00362 RPE_RS11980 1fcb4c7248528b99d24d96d4054b5234 295 SUPERFAMILY SSF48179 161 291 1.13E-41 T 23-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RPE_RS11980 1fcb4c7248528b99d24d96d4054b5234 295 PANTHER PTHR22981 1 294 1.1E-111 T 23-04-2016 RPE_RS11980 1fcb4c7248528b99d24d96d4054b5234 295 Gene3D G3DSA:3.40.50.720 2 159 1.2E-52 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS11980 1fcb4c7248528b99d24d96d4054b5234 295 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 6 19 - T 23-04-2016 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 RPE_RS11980 1fcb4c7248528b99d24d96d4054b5234 295 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 159 2.2E-49 T 23-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 RPE_RS11980 1fcb4c7248528b99d24d96d4054b5234 295 Gene3D G3DSA:1.10.1040.10 161 294 1.5E-47 T 23-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RPE_RS05810 bb273de5a5486041e87404bddcce3aac 443 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 359 3.5E-68 T 23-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RPE_RS05810 bb273de5a5486041e87404bddcce3aac 443 TIGRFAM TIGR03498 FliI_clade3: flagellar protein export ATPase FliI 25 437 4.7E-191 T 23-04-2016 IPR022426 Flagellum-specific ATP synthase FliI, clade 3 GO:0009288|GO:0016887|GO:0030257|GO:0044781 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RPE_RS05810 bb273de5a5486041e87404bddcce3aac 443 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 7 425 7.9E-129 T 23-04-2016 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RPE_RS05810 bb273de5a5486041e87404bddcce3aac 443 PANTHER PTHR15184 1 442 6.2E-150 T 23-04-2016 RPE_RS05810 bb273de5a5486041e87404bddcce3aac 443 Gene3D G3DSA:3.40.50.300 127 404 3.2E-87 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS05810 bb273de5a5486041e87404bddcce3aac 443 PANTHER PTHR15184:SF9 1 442 6.2E-150 T 23-04-2016 IPR032463 ATPase, type III secretion system, FliI GO:0016887|GO:0030257|GO:0044780 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RPE_RS05810 bb273de5a5486041e87404bddcce3aac 443 SUPERFAMILY SSF52540 98 365 1.15E-86 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS05810 bb273de5a5486041e87404bddcce3aac 443 SMART SM00382 161 343 1.4E-8 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS06285 4bc743c133add9b1c8bb600b850ca02a 324 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 131 292 1.1E-34 T 23-04-2016 IPR003495 CobW/HypB/UreG, nucleotide-binding domain RPE_RS06285 4bc743c133add9b1c8bb600b850ca02a 324 SUPERFAMILY SSF52540 101 312 2.09E-32 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS06285 4bc743c133add9b1c8bb600b850ca02a 324 PANTHER PTHR30134:SF2 58 312 6.6E-135 T 23-04-2016 RPE_RS06285 4bc743c133add9b1c8bb600b850ca02a 324 PANTHER PTHR30134 58 312 6.6E-135 T 23-04-2016 RPE_RS06285 4bc743c133add9b1c8bb600b850ca02a 324 Gene3D G3DSA:3.40.50.300 138 296 7.9E-10 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS06285 4bc743c133add9b1c8bb600b850ca02a 324 TIGRFAM TIGR00073 hypB: hydrogenase accessory protein HypB 103 312 9.8E-88 T 23-04-2016 IPR004392 Hydrogenase accessory protein HypB GO:0006461|GO:0016151 RPE_RS12680 f50abe4dbb14ba2231842c8444ce9f41 441 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 8 417 3.8E-188 T 23-04-2016 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 RPE_RS12680 f50abe4dbb14ba2231842c8444ce9f41 441 PANTHER PTHR11780 2 423 8.9E-258 T 23-04-2016 RPE_RS12680 f50abe4dbb14ba2231842c8444ce9f41 441 SUPERFAMILY SSF142019 4 239 2.35E-82 T 23-04-2016 RPE_RS12680 f50abe4dbb14ba2231842c8444ce9f41 441 PANTHER PTHR11780:SF10 2 423 8.9E-258 T 23-04-2016 RPE_RS12680 f50abe4dbb14ba2231842c8444ce9f41 441 SUPERFAMILY SSF142984 241 326 4.58E-22 T 23-04-2016 RPE_RS12680 f50abe4dbb14ba2231842c8444ce9f41 441 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 167 182 - T 23-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 RPE_RS12680 f50abe4dbb14ba2231842c8444ce9f41 441 Pfam PF10531 SLBB domain 244 292 2.4E-8 T 23-04-2016 IPR019554 Soluble ligand binding domain RPE_RS12680 f50abe4dbb14ba2231842c8444ce9f41 441 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 333 415 2.6E-28 T 23-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 RPE_RS12680 f50abe4dbb14ba2231842c8444ce9f41 441 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 47 217 8.7E-49 T 23-04-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain RPE_RS12680 f50abe4dbb14ba2231842c8444ce9f41 441 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 344 355 - T 23-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 RPE_RS12680 f50abe4dbb14ba2231842c8444ce9f41 441 SUPERFAMILY SSF140490 327 419 3.27E-35 T 23-04-2016 RPE_RS12680 f50abe4dbb14ba2231842c8444ce9f41 441 SMART SM00928 331 376 9.4E-25 T 23-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 RPE_RS04245 f39ed1258b7cd1d4161cf45f2c6fc08c 109 Pfam PF05402 Coenzyme PQQ synthesis protein D (PqqD) 33 96 3.3E-15 T 23-04-2016 IPR008792 Coenzyme PQQ synthesis D UniPathway: UPA00539 RPE_RS04245 f39ed1258b7cd1d4161cf45f2c6fc08c 109 TIGRFAM TIGR03859 PQQ_PqqD: coenzyme PQQ biosynthesis protein PqqD 16 96 1.5E-22 T 23-04-2016 IPR022479 Coenzyme PQQ synthesis D, bacteria GO:0018189|GO:0048038 UniPathway: UPA00539 RPE_RS04245 f39ed1258b7cd1d4161cf45f2c6fc08c 109 Hamap MF_00655 Coenzyme PQQ synthesis protein D [pqqD]. 10 98 20.679 T 23-04-2016 IPR022479 Coenzyme PQQ synthesis D, bacteria GO:0018189|GO:0048038 UniPathway: UPA00539 RPE_RS20895 29d8052539124e3a2600669a40bfe8b3 312 PRINTS PR00069 Aldo-keto reductase signature 135 152 2.5E-6 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RPE_RS20895 29d8052539124e3a2600669a40bfe8b3 312 PRINTS PR00069 Aldo-keto reductase signature 104 122 2.5E-6 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RPE_RS20895 29d8052539124e3a2600669a40bfe8b3 312 PRINTS PR00069 Aldo-keto reductase signature 39 63 2.5E-6 T 23-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RPE_RS20895 29d8052539124e3a2600669a40bfe8b3 312 PANTHER PTHR11732 1 312 6.8E-114 T 23-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta RPE_RS20895 29d8052539124e3a2600669a40bfe8b3 312 SUPERFAMILY SSF51430 1 311 2.23E-95 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RPE_RS20895 29d8052539124e3a2600669a40bfe8b3 312 Pfam PF00248 Aldo/keto reductase family 16 309 5.7E-69 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RPE_RS20895 29d8052539124e3a2600669a40bfe8b3 312 Gene3D G3DSA:3.20.20.100 9 310 2.3E-95 T 23-04-2016 IPR023210 NADP-dependent oxidoreductase domain RPE_RS10010 8bb1a8398547ed92688337132245ea7f 136 Pfam PF01850 PIN domain 5 124 1.2E-19 T 23-04-2016 IPR002716 PIN domain RPE_RS10010 8bb1a8398547ed92688337132245ea7f 136 SUPERFAMILY SSF88723 3 133 3.64E-29 T 23-04-2016 IPR029060 PIN domain-like RPE_RS10010 8bb1a8398547ed92688337132245ea7f 136 PANTHER PTHR33653:SF2 1 132 4.5E-24 T 23-04-2016 RPE_RS10010 8bb1a8398547ed92688337132245ea7f 136 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 4 130 11.426 T 23-04-2016 IPR022907 VapC family GO:0004540 RPE_RS10010 8bb1a8398547ed92688337132245ea7f 136 PANTHER PTHR33653 1 132 4.5E-24 T 23-04-2016 RPE_RS10010 8bb1a8398547ed92688337132245ea7f 136 Gene3D G3DSA:3.40.50.1010 1 133 1.5E-24 T 23-04-2016 IPR029060 PIN domain-like RPE_RS19480 1a71b2e31ae95404286bcba6ff667bc4 92 Gene3D G3DSA:3.10.180.10 33 79 9.8E-4 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RPE_RS19480 1a71b2e31ae95404286bcba6ff667bc4 92 Pfam PF13670 Peptidase propeptide and YPEB domain 8 90 8.4E-23 T 23-04-2016 IPR025711 PepSY domain RPE_RS04010 6b9b9a491d91aec37e62046b3c7f4448 426 PANTHER PTHR10283:SF103 4 425 1.1E-153 T 23-04-2016 RPE_RS04010 6b9b9a491d91aec37e62046b3c7f4448 426 PANTHER PTHR10283 4 425 1.1E-153 T 23-04-2016 RPE_RS04010 6b9b9a491d91aec37e62046b3c7f4448 426 Pfam PF03600 Citrate transporter 14 372 3.7E-34 T 23-04-2016 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 RPE_RS02230 4452cabbacd42b68bf7ebbab424d43c9 445 Gene3D G3DSA:3.65.10.10 210 443 1.7E-54 T 23-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 RPE_RS02230 4452cabbacd42b68bf7ebbab424d43c9 445 PANTHER PTHR21090:SF5 10 444 1.3E-163 T 23-04-2016 RPE_RS02230 4452cabbacd42b68bf7ebbab424d43c9 445 PANTHER PTHR21090 10 444 1.3E-163 T 23-04-2016 RPE_RS02230 4452cabbacd42b68bf7ebbab424d43c9 445 SUPERFAMILY SSF55205 14 443 1.54E-122 T 23-04-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 RPE_RS02230 4452cabbacd42b68bf7ebbab424d43c9 445 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 16 443 31.311 T 23-04-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 RPE_RS02230 4452cabbacd42b68bf7ebbab424d43c9 445 PIRSF PIRSF000505 2 445 9.3E-132 T 23-04-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 RPE_RS02230 4452cabbacd42b68bf7ebbab424d43c9 445 ProSitePatterns PS00104 EPSP synthase signature 1. 95 109 - T 23-04-2016 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 RPE_RS02230 4452cabbacd42b68bf7ebbab424d43c9 445 Gene3D G3DSA:3.65.10.10 26 209 2.2E-47 T 23-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 RPE_RS02230 4452cabbacd42b68bf7ebbab424d43c9 445 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 14 435 1.1E-103 T 23-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 RPE_RS02230 4452cabbacd42b68bf7ebbab424d43c9 445 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 20 442 5.5E-124 T 23-04-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 RPE_RS02230 4452cabbacd42b68bf7ebbab424d43c9 445 ProSitePatterns PS00885 EPSP synthase signature 2. 353 371 - T 23-04-2016 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 RPE_RS21240 a7947e03cf8948f992aa1fddb13b890b 577 SUPERFAMILY SSF53756 209 514 2.72E-5 T 23-04-2016 RPE_RS22570 7ef943cbe467b03b8d05f5e2c0bd5f44 112 PIRSF PIRSF005790 5 112 3.4E-42 T 23-04-2016 IPR004893 Nitrogen fixation protein NifW GO:0009399 RPE_RS22570 7ef943cbe467b03b8d05f5e2c0bd5f44 112 Hamap MF_00529 Nitrogenase-stabilizing/protective protein NifW [nifW]. 9 112 25.552 T 23-04-2016 IPR004893 Nitrogen fixation protein NifW GO:0009399 RPE_RS22570 7ef943cbe467b03b8d05f5e2c0bd5f44 112 Pfam PF03206 Nitrogen fixation protein NifW 11 111 2.0E-34 T 23-04-2016 IPR004893 Nitrogen fixation protein NifW GO:0009399 RPE_RS12105 5422479e62c6bc77337e407c93420430 201 Pfam PF02517 CAAX protease self-immunity 102 191 3.0E-10 T 23-04-2016 IPR003675 CAAX amino terminal protease GO:0016020 RPE_RS00885 348b84b8ca9731502ec343042a4ee71f 308 PANTHER PTHR12001:SF23 9 289 8.8E-95 T 23-04-2016 RPE_RS00885 348b84b8ca9731502ec343042a4ee71f 308 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 93 109 - T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RPE_RS00885 348b84b8ca9731502ec343042a4ee71f 308 Pfam PF00348 Polyprenyl synthetase 42 272 1.7E-52 T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RPE_RS00885 348b84b8ca9731502ec343042a4ee71f 308 Gene3D G3DSA:1.10.600.10 8 306 1.5E-87 T 23-04-2016 IPR008949 Isoprenoid synthase domain RPE_RS00885 348b84b8ca9731502ec343042a4ee71f 308 SUPERFAMILY SSF48576 38 297 6.24E-77 T 23-04-2016 IPR008949 Isoprenoid synthase domain RPE_RS00885 348b84b8ca9731502ec343042a4ee71f 308 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 227 239 - T 23-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RPE_RS00885 348b84b8ca9731502ec343042a4ee71f 308 PANTHER PTHR12001 9 289 8.8E-95 T 23-04-2016 IPR017446 Polyprenyl synthetase-related RPE_RS08715 6a99727607f2ca9a0abfe806b7a06373 504 PANTHER PTHR12083 393 472 6.5E-110 T 23-04-2016 RPE_RS08715 6a99727607f2ca9a0abfe806b7a06373 504 PANTHER PTHR12083 1 368 6.5E-110 T 23-04-2016 RPE_RS08715 6a99727607f2ca9a0abfe806b7a06373 504 Gene3D G3DSA:3.90.1200.10 128 271 7.1E-6 T 23-04-2016 RPE_RS08715 6a99727607f2ca9a0abfe806b7a06373 504 SUPERFAMILY SSF52540 327 502 1.04E-19 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS08715 6a99727607f2ca9a0abfe806b7a06373 504 Pfam PF13671 AAA domain 331 466 5.1E-20 T 23-04-2016 RPE_RS08715 6a99727607f2ca9a0abfe806b7a06373 504 PANTHER PTHR12083:SF8 393 472 6.5E-110 T 23-04-2016 RPE_RS08715 6a99727607f2ca9a0abfe806b7a06373 504 PANTHER PTHR12083:SF8 1 368 6.5E-110 T 23-04-2016 RPE_RS08715 6a99727607f2ca9a0abfe806b7a06373 504 SUPERFAMILY SSF56112 16 290 2.21E-18 T 23-04-2016 IPR011009 Protein kinase-like domain RPE_RS08715 6a99727607f2ca9a0abfe806b7a06373 504 Gene3D G3DSA:3.40.50.300 328 501 9.9E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS18980 632da70056dd9fd1873ffb7ca3176f0a 346 PANTHER PTHR11795 115 344 4.5E-155 T 23-04-2016 RPE_RS18980 632da70056dd9fd1873ffb7ca3176f0a 346 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 330 1.3E-19 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RPE_RS18980 632da70056dd9fd1873ffb7ca3176f0a 346 PANTHER PTHR11795 1 57 4.5E-155 T 23-04-2016 RPE_RS18980 632da70056dd9fd1873ffb7ca3176f0a 346 PANTHER PTHR11795:SF402 115 344 4.5E-155 T 23-04-2016 RPE_RS18980 632da70056dd9fd1873ffb7ca3176f0a 346 PANTHER PTHR11795:SF402 1 57 4.5E-155 T 23-04-2016 RPE_RS22735 6d2775b7c5a0b69f4b9d67d14af853f9 265 Pfam PF02358 Trehalose-phosphatase 32 229 1.3E-30 T 23-04-2016 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 RPE_RS22735 6d2775b7c5a0b69f4b9d67d14af853f9 265 Gene3D G3DSA:3.40.50.1000 181 261 6.7E-31 T 23-04-2016 IPR023214 HAD-like domain RPE_RS22735 6d2775b7c5a0b69f4b9d67d14af853f9 265 Gene3D G3DSA:3.40.50.1000 30 104 6.7E-31 T 23-04-2016 IPR023214 HAD-like domain RPE_RS22735 6d2775b7c5a0b69f4b9d67d14af853f9 265 SUPERFAMILY SSF56784 30 253 8.14E-34 T 23-04-2016 IPR023214 HAD-like domain RPE_RS22735 6d2775b7c5a0b69f4b9d67d14af853f9 265 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 31 225 1.8E-13 T 23-04-2016 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: REACT_17015 RPE_RS22735 6d2775b7c5a0b69f4b9d67d14af853f9 265 PANTHER PTHR10788 30 265 7.2E-40 T 23-04-2016 RPE_RS22735 6d2775b7c5a0b69f4b9d67d14af853f9 265 TIGRFAM TIGR00685 T6PP: trehalose-phosphatase 30 225 9.5E-36 T 23-04-2016 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 RPE_RS22655 a98f39396f7ffe349cbc8b054d1be7d0 76 Pfam PF04319 NifZ domain 4 74 3.0E-26 T 23-04-2016 IPR007415 Nitrogenase MoFe maturation protein, NifZ GO:0009399 RPE_RS17460 48306e755d0906f5a2158972dfeac2b4 350 Gene3D G3DSA:3.40.50.1980 181 315 6.5E-27 T 23-04-2016 RPE_RS17460 48306e755d0906f5a2158972dfeac2b4 350 PANTHER PTHR30535 7 346 1.2E-48 T 23-04-2016 RPE_RS17460 48306e755d0906f5a2158972dfeac2b4 350 Gene3D G3DSA:3.40.50.1980 28 163 2.1E-10 T 23-04-2016 RPE_RS17460 48306e755d0906f5a2158972dfeac2b4 350 SUPERFAMILY SSF53807 30 314 1.61E-42 T 23-04-2016 RPE_RS17460 48306e755d0906f5a2158972dfeac2b4 350 Pfam PF01497 Periplasmic binding protein 97 287 1.4E-16 T 23-04-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 RPE_RS17460 48306e755d0906f5a2158972dfeac2b4 350 PANTHER PTHR30535:SF16 7 346 1.2E-48 T 23-04-2016 RPE_RS08240 797f6d556b34619b427f75bc4bcc7782 183 PANTHER PTHR30529 1 183 2.9E-60 T 23-04-2016 RPE_RS08240 797f6d556b34619b427f75bc4bcc7782 183 PANTHER PTHR30529:SF5 1 183 2.9E-60 T 23-04-2016 RPE_RS08240 797f6d556b34619b427f75bc4bcc7782 183 Pfam PF01292 Prokaryotic cytochrome b561 9 179 4.6E-24 T 23-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 RPE_RS08240 797f6d556b34619b427f75bc4bcc7782 183 SUPERFAMILY SSF81342 4 180 1.18E-30 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 RPE_RS04700 7e9f9f0ba83dafdf0c9e15daac471877 202 SUPERFAMILY SSF46785 49 156 6.68E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS04700 7e9f9f0ba83dafdf0c9e15daac471877 202 Gene3D G3DSA:1.10.10.10 41 142 1.6E-27 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS04700 7e9f9f0ba83dafdf0c9e15daac471877 202 PANTHER PTHR33169 37 156 4.2E-26 T 23-04-2016 RPE_RS04700 7e9f9f0ba83dafdf0c9e15daac471877 202 Pfam PF03551 Transcriptional regulator PadR-like family 55 122 1.2E-16 T 23-04-2016 IPR005149 Transcription regulator PadR, N-terminal RPE_RS04700 7e9f9f0ba83dafdf0c9e15daac471877 202 PANTHER PTHR33169:SF2 37 156 4.2E-26 T 23-04-2016 RPE_RS16295 b963522ed76685141bf6159031355b90 891 Pfam PF10593 Z1 domain 399 629 1.8E-69 T 23-04-2016 IPR018310 Putative endonuclease, Z1 domain RPE_RS09980 d9216f2c717e9e758f9137f5667a2b90 173 Pfam PF09832 Uncharacterized protein conserved in bacteria (DUF2059) 99 157 4.5E-22 T 23-04-2016 IPR018637 Domain of unknown function DUF2059 RPE_RS07215 3519b8e7b125f348590b11e1d7260da6 372 PANTHER PTHR12049 10 349 8.1E-119 T 23-04-2016 IPR003788 Putative S-adenosyl-L-methionine-dependent methyltransferase MidA RPE_RS07215 3519b8e7b125f348590b11e1d7260da6 372 Pfam PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase 63 297 4.0E-69 T 23-04-2016 IPR003788 Putative S-adenosyl-L-methionine-dependent methyltransferase MidA RPE_RS07215 3519b8e7b125f348590b11e1d7260da6 372 SUPERFAMILY SSF53335 5 361 1.56E-113 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS07215 3519b8e7b125f348590b11e1d7260da6 372 PANTHER PTHR12049:SF7 10 349 8.1E-119 T 23-04-2016 RPE_RS04380 3cf2de6830906f119ac818f8011ff322 344 PANTHER PTHR10859 3 327 1.1E-140 T 23-04-2016 RPE_RS04380 3cf2de6830906f119ac818f8011ff322 344 Pfam PF00535 Glycosyl transferase family 2 25 160 4.1E-26 T 23-04-2016 IPR001173 Glycosyltransferase 2-like RPE_RS04380 3cf2de6830906f119ac818f8011ff322 344 Gene3D G3DSA:3.90.550.10 25 164 1.5E-18 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS04380 3cf2de6830906f119ac818f8011ff322 344 PANTHER PTHR10859:SF86 3 327 1.1E-140 T 23-04-2016 RPE_RS04380 3cf2de6830906f119ac818f8011ff322 344 SUPERFAMILY SSF53448 24 257 3.42E-30 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS06945 2e709639fa6d54d96d781036779a2f2b 359 SMART SM00382 27 212 8.6E-7 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS06945 2e709639fa6d54d96d781036779a2f2b 359 SUPERFAMILY SSF50331 236 352 1.63E-17 T 23-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal RPE_RS06945 2e709639fa6d54d96d781036779a2f2b 359 Gene3D G3DSA:2.40.50.140 280 339 1.6E-11 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS06945 2e709639fa6d54d96d781036779a2f2b 359 PANTHER PTHR24220 4 247 2.8E-110 T 23-04-2016 RPE_RS06945 2e709639fa6d54d96d781036779a2f2b 359 Pfam PF08402 TOBE domain 275 346 8.1E-6 T 23-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 RPE_RS06945 2e709639fa6d54d96d781036779a2f2b 359 SUPERFAMILY SSF52540 4 241 2.89E-63 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS06945 2e709639fa6d54d96d781036779a2f2b 359 Pfam PF00005 ABC transporter 19 160 3.2E-28 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS06945 2e709639fa6d54d96d781036779a2f2b 359 PANTHER PTHR24220:SF282 4 247 2.8E-110 T 23-04-2016 RPE_RS06945 2e709639fa6d54d96d781036779a2f2b 359 Gene3D G3DSA:3.40.50.300 4 231 1.3E-54 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS01300 b98afb172c9b36078777f737b874b135 155 PANTHER PTHR33202:SF3 16 150 2.3E-75 T 23-04-2016 RPE_RS01300 b98afb172c9b36078777f737b874b135 155 SUPERFAMILY SSF46785 26 150 1.9E-28 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS01300 b98afb172c9b36078777f737b874b135 155 PANTHER PTHR33202 16 150 2.3E-75 T 23-04-2016 RPE_RS01300 b98afb172c9b36078777f737b874b135 155 Pfam PF01475 Ferric uptake regulator family 33 148 7.9E-20 T 23-04-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 RPE_RS01300 b98afb172c9b36078777f737b874b135 155 Gene3D G3DSA:1.10.10.10 24 105 3.7E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS14870 f79fa4408bb8a4801826988a9bc32f5a 355 Pfam PF00990 Diguanylate cyclase, GGDEF domain 179 337 6.7E-47 T 23-04-2016 IPR000160 GGDEF domain RPE_RS14870 f79fa4408bb8a4801826988a9bc32f5a 355 SUPERFAMILY SSF55073 183 340 2.82E-47 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS14870 f79fa4408bb8a4801826988a9bc32f5a 355 PANTHER PTHR10799 1 27 2.4E-30 T 23-04-2016 RPE_RS14870 f79fa4408bb8a4801826988a9bc32f5a 355 PANTHER PTHR10799:SF750 1 27 2.4E-30 T 23-04-2016 RPE_RS14870 f79fa4408bb8a4801826988a9bc32f5a 355 PANTHER PTHR10799 211 338 2.4E-30 T 23-04-2016 RPE_RS14870 f79fa4408bb8a4801826988a9bc32f5a 355 SMART SM00267 167 341 2.5E-62 T 23-04-2016 IPR000160 GGDEF domain RPE_RS14870 f79fa4408bb8a4801826988a9bc32f5a 355 PANTHER PTHR10799:SF750 211 338 2.4E-30 T 23-04-2016 RPE_RS14870 f79fa4408bb8a4801826988a9bc32f5a 355 Gene3D G3DSA:3.30.70.270 180 341 7.2E-53 T 23-04-2016 RPE_RS14870 f79fa4408bb8a4801826988a9bc32f5a 355 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 177 340 1.6E-51 T 23-04-2016 IPR000160 GGDEF domain RPE_RS11195 c713879dfe97af9c4a56928a1c4e5280 225 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 2 207 6.1E-14 T 23-04-2016 IPR002751 Cobalamin (vitamin B12) biosynthesis CbiM family GO:0000041|GO:0016021 UniPathway: UPA00148 RPE_RS05515 a2feb0ef0b6c606c988466822cbdda33 190 Pfam PF02563 Polysaccharide biosynthesis/export protein 19 90 1.1E-14 T 23-04-2016 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 RPE_RS05515 a2feb0ef0b6c606c988466822cbdda33 190 PANTHER PTHR33619 1 190 2.5E-31 T 23-04-2016 RPE_RS05515 a2feb0ef0b6c606c988466822cbdda33 190 Gene3D G3DSA:3.10.560.10 101 185 3.4E-15 T 23-04-2016 RPE_RS05515 a2feb0ef0b6c606c988466822cbdda33 190 Gene3D G3DSA:3.30.1950.10 24 91 3.8E-14 T 23-04-2016 RPE_RS05515 a2feb0ef0b6c606c988466822cbdda33 190 Pfam PF10531 SLBB domain 104 151 8.9E-10 T 23-04-2016 IPR019554 Soluble ligand binding domain RPE_RS23720 2de9eaa0df9fcb62d8d01149ff6cc098 74 Pfam PF04255 Protein of unknown function (DUF433) 7 62 1.6E-25 T 23-04-2016 IPR007367 Protein of unknown function DUF433 RPE_RS23720 2de9eaa0df9fcb62d8d01149ff6cc098 74 Gene3D G3DSA:1.10.10.10 7 69 1.2E-27 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS23720 2de9eaa0df9fcb62d8d01149ff6cc098 74 PANTHER PTHR34849:SF5 1 69 1.3E-28 T 23-04-2016 RPE_RS23720 2de9eaa0df9fcb62d8d01149ff6cc098 74 SUPERFAMILY SSF46689 2 68 1.42E-22 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS23720 2de9eaa0df9fcb62d8d01149ff6cc098 74 PANTHER PTHR34849 1 69 1.3E-28 T 23-04-2016 RPE_RS14855 b916cedd6dcdc50852e80ef0f9976182 732 Pfam PF07715 TonB-dependent Receptor Plug Domain 98 207 1.4E-15 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RPE_RS14855 b916cedd6dcdc50852e80ef0f9976182 732 Pfam PF00593 TonB dependent receptor 476 731 5.8E-24 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RPE_RS14855 b916cedd6dcdc50852e80ef0f9976182 732 PANTHER PTHR32552 89 732 1.6E-45 T 23-04-2016 RPE_RS14855 b916cedd6dcdc50852e80ef0f9976182 732 PANTHER PTHR32552 8 42 1.6E-45 T 23-04-2016 RPE_RS14855 b916cedd6dcdc50852e80ef0f9976182 732 SUPERFAMILY SSF56935 28 42 1.86E-96 T 23-04-2016 RPE_RS14855 b916cedd6dcdc50852e80ef0f9976182 732 SUPERFAMILY SSF56935 89 732 1.86E-96 T 23-04-2016 RPE_RS14855 b916cedd6dcdc50852e80ef0f9976182 732 Gene3D G3DSA:2.40.170.20 209 732 2.3E-75 T 23-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 RPE_RS14855 b916cedd6dcdc50852e80ef0f9976182 732 Gene3D G3DSA:2.170.130.10 89 208 5.9E-25 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RPE_RS14855 b916cedd6dcdc50852e80ef0f9976182 732 Gene3D G3DSA:2.170.130.10 31 42 5.9E-25 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RPE_RS14730 d040d42e42c4721dbabbc030ce14af94 572 Gene3D G3DSA:2.70.70.10 377 525 6.6E-10 T 23-04-2016 RPE_RS14730 d040d42e42c4721dbabbc030ce14af94 572 Pfam PF01551 Peptidase family M23 426 511 9.5E-8 T 23-04-2016 IPR016047 Peptidase M23 RPE_RS14730 d040d42e42c4721dbabbc030ce14af94 572 SUPERFAMILY SSF51261 419 526 6.28E-6 T 23-04-2016 IPR011055 Duplicated hybrid motif RPE_RS19605 b9a17e6cab82ca114780105b74d79ff1 328 SUPERFAMILY SSF53850 116 285 2.61E-7 T 23-04-2016 RPE_RS19605 b9a17e6cab82ca114780105b74d79ff1 328 PIRSF PIRSF017082 3 317 1.1E-60 T 23-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RPE_RS19605 b9a17e6cab82ca114780105b74d79ff1 328 PANTHER PTHR30349 7 287 5.7E-73 T 23-04-2016 RPE_RS19605 b9a17e6cab82ca114780105b74d79ff1 328 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 48 318 2.0E-61 T 23-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RPE_RS19605 b9a17e6cab82ca114780105b74d79ff1 328 PANTHER PTHR30349:SF1 7 287 5.7E-73 T 23-04-2016 RPE_RS19215 82f994f9181788d0300d51b9cd0451a1 457 PANTHER PTHR11206:SF132 19 416 1.1E-104 T 23-04-2016 RPE_RS19215 82f994f9181788d0300d51b9cd0451a1 457 Pfam PF01554 MatE 270 413 2.2E-12 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RPE_RS19215 82f994f9181788d0300d51b9cd0451a1 457 Pfam PF01554 MatE 34 193 6.3E-20 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RPE_RS19215 82f994f9181788d0300d51b9cd0451a1 457 PIRSF PIRSF006603 12 456 2.0E-60 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RPE_RS19215 82f994f9181788d0300d51b9cd0451a1 457 PANTHER PTHR11206 19 416 1.1E-104 T 23-04-2016 RPE_RS03435 93d0e503dff14a6c94547edb46a428a2 291 Gene3D G3DSA:3.90.550.10 3 277 1.4E-61 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS03435 93d0e503dff14a6c94547edb46a428a2 291 PANTHER PTHR22572:SF14 5 291 4.1E-97 T 23-04-2016 RPE_RS03435 93d0e503dff14a6c94547edb46a428a2 291 SUPERFAMILY SSF53448 1 277 1.15E-59 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS03435 93d0e503dff14a6c94547edb46a428a2 291 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 3 266 6.5E-99 T 23-04-2016 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343 RPE_RS03435 93d0e503dff14a6c94547edb46a428a2 291 Pfam PF00483 Nucleotidyl transferase 10 267 9.1E-23 T 23-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 RPE_RS03435 93d0e503dff14a6c94547edb46a428a2 291 PANTHER PTHR22572 5 291 4.1E-97 T 23-04-2016 RPE_RS23330 7f47179b3d232b4241fd560b739a958a 195 PANTHER PTHR30055 1 70 2.9E-14 T 23-04-2016 RPE_RS23330 7f47179b3d232b4241fd560b739a958a 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 1.9E-11 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS23330 7f47179b3d232b4241fd560b739a958a 195 Gene3D G3DSA:1.10.357.10 70 186 1.5E-11 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RPE_RS23330 7f47179b3d232b4241fd560b739a958a 195 Gene3D G3DSA:1.10.10.60 9 66 2.4E-17 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS23330 7f47179b3d232b4241fd560b739a958a 195 PANTHER PTHR30055:SF53 1 70 2.9E-14 T 23-04-2016 RPE_RS23330 7f47179b3d232b4241fd560b739a958a 195 SUPERFAMILY SSF46689 6 68 2.77E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS23330 7f47179b3d232b4241fd560b739a958a 195 SUPERFAMILY SSF48498 77 186 2.71E-16 T 23-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RPE_RS14100 8729ce8cfa1709081100c07315cb98a7 144 SUPERFAMILY SSF52200 7 134 4.97E-9 T 23-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 RPE_RS14100 8729ce8cfa1709081100c07315cb98a7 144 Pfam PF13676 TIR domain 8 113 7.2E-14 T 23-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 RPE_RS14100 8729ce8cfa1709081100c07315cb98a7 144 Gene3D G3DSA:3.40.50.10140 8 84 3.4E-4 T 23-04-2016 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 RPE_RS16950 06c1166cdf0174e7542d49930a507753 55 PANTHER PTHR15238 1 55 2.7E-19 T 23-04-2016 RPE_RS16950 06c1166cdf0174e7542d49930a507753 55 SUPERFAMILY SSF57829 1 53 2.99E-16 T 23-04-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 RPE_RS16950 06c1166cdf0174e7542d49930a507753 55 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 2 53 11.954 T 23-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS16950 06c1166cdf0174e7542d49930a507753 55 Pfam PF00471 Ribosomal protein L33 7 53 8.3E-14 T 23-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS16950 06c1166cdf0174e7542d49930a507753 55 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 55 9.4E-18 T 23-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS16950 06c1166cdf0174e7542d49930a507753 55 ProSitePatterns PS00582 Ribosomal protein L33 signature. 21 40 - T 23-04-2016 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS24380 041a1d1de93e334fa0bbdf4b16196c5e 316 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 110 283 1.4E-15 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain RPE_RS24380 041a1d1de93e334fa0bbdf4b16196c5e 316 Gene3D G3DSA:3.40.50.1110 105 293 3.4E-33 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain RPE_RS24380 041a1d1de93e334fa0bbdf4b16196c5e 316 PANTHER PTHR30383:SF5 54 314 4.6E-49 T 23-04-2016 RPE_RS24380 041a1d1de93e334fa0bbdf4b16196c5e 316 PANTHER PTHR30383 54 314 4.6E-49 T 23-04-2016 RPE_RS24380 041a1d1de93e334fa0bbdf4b16196c5e 316 SUPERFAMILY SSF52266 106 296 4.58E-37 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain RPE_RS21825 9e2d3dfcfc58370589690b65ba469740 132 PANTHER PTHR30432 11 111 2.0E-23 T 23-04-2016 RPE_RS21825 9e2d3dfcfc58370589690b65ba469740 132 SUPERFAMILY SSF46785 9 108 2.92E-26 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS21825 9e2d3dfcfc58370589690b65ba469740 132 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 25 86 4.6E-11 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS21825 9e2d3dfcfc58370589690b65ba469740 132 Gene3D G3DSA:1.10.10.10 8 119 1.5E-39 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS04965 373a1205bab3a97a10fa24483b82e4d1 289 Gene3D G3DSA:1.10.10.10 50 97 1.2E-4 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS04965 373a1205bab3a97a10fa24483b82e4d1 289 PANTHER PTHR30319:SF1 3 289 7.0E-65 T 23-04-2016 RPE_RS04965 373a1205bab3a97a10fa24483b82e4d1 289 PANTHER PTHR30319 3 289 7.0E-65 T 23-04-2016 RPE_RS04965 373a1205bab3a97a10fa24483b82e4d1 289 Pfam PF07848 PaaX-like protein 19 86 7.1E-24 T 23-04-2016 IPR012906 PaaX-like, N-terminal UniPathway: UPA00930 RPE_RS04965 373a1205bab3a97a10fa24483b82e4d1 289 PIRSF PIRSF020623 1 289 5.1E-88 T 23-04-2016 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX GO:0006351 UniPathway: UPA00930 RPE_RS04965 373a1205bab3a97a10fa24483b82e4d1 289 Pfam PF08223 PaaX-like protein C-terminal domain 106 259 7.7E-31 T 23-04-2016 IPR013225 PaaX-like, C-terminal UniPathway: UPA00930 RPE_RS04965 373a1205bab3a97a10fa24483b82e4d1 289 SUPERFAMILY SSF46785 51 101 4.48E-5 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS04965 373a1205bab3a97a10fa24483b82e4d1 289 TIGRFAM TIGR02277 PaaX_trns_reg: phenylacetic acid degradation operon negative regulatory protein PaaX 22 288 5.5E-86 T 23-04-2016 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX GO:0006351 UniPathway: UPA00930 RPE_RS04455 0c1f43f27c0ca5c3235acb88ca577ba8 299 SUPERFAMILY SSF53850 12 284 3.58E-23 T 23-04-2016 RPE_RS04455 0c1f43f27c0ca5c3235acb88ca577ba8 299 SMART SM00062 38 287 2.5E-7 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RPE_RS04455 0c1f43f27c0ca5c3235acb88ca577ba8 299 Gene3D G3DSA:3.40.190.10 33 133 1.4E-16 T 23-04-2016 RPE_RS04455 0c1f43f27c0ca5c3235acb88ca577ba8 299 Gene3D G3DSA:3.40.190.10 242 284 1.4E-16 T 23-04-2016 RPE_RS04455 0c1f43f27c0ca5c3235acb88ca577ba8 299 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 110 284 2.4E-10 T 23-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RPE_RS04150 0078957ce25789bbfc12a13b43ad6e96 111 PANTHER PTHR33705 21 111 4.1E-39 T 23-04-2016 RPE_RS04150 0078957ce25789bbfc12a13b43ad6e96 111 SUPERFAMILY SSF55594 25 110 2.88E-28 T 23-04-2016 IPR000032 Phosphocarrier HPr protein-like RPE_RS04150 0078957ce25789bbfc12a13b43ad6e96 111 PRINTS PR00107 Phosphocarrier protein signature 60 75 5.4E-12 T 23-04-2016 IPR000032 Phosphocarrier HPr protein-like RPE_RS04150 0078957ce25789bbfc12a13b43ad6e96 111 PRINTS PR00107 Phosphocarrier protein signature 75 92 5.4E-12 T 23-04-2016 IPR000032 Phosphocarrier HPr protein-like RPE_RS04150 0078957ce25789bbfc12a13b43ad6e96 111 PRINTS PR00107 Phosphocarrier protein signature 35 51 5.4E-12 T 23-04-2016 IPR000032 Phosphocarrier HPr protein-like RPE_RS04150 0078957ce25789bbfc12a13b43ad6e96 111 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 35 42 - T 23-04-2016 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site RPE_RS04150 0078957ce25789bbfc12a13b43ad6e96 111 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 25 104 2.1E-29 T 23-04-2016 IPR000032 Phosphocarrier HPr protein-like RPE_RS04150 0078957ce25789bbfc12a13b43ad6e96 111 Gene3D G3DSA:3.30.1340.10 25 110 1.1E-29 T 23-04-2016 IPR000032 Phosphocarrier HPr protein-like RPE_RS04150 0078957ce25789bbfc12a13b43ad6e96 111 Pfam PF00381 PTS HPr component phosphorylation site 25 104 4.8E-25 T 23-04-2016 IPR000032 Phosphocarrier HPr protein-like RPE_RS04150 0078957ce25789bbfc12a13b43ad6e96 111 PANTHER PTHR33705:SF2 21 111 4.1E-39 T 23-04-2016 RPE_RS05990 77d15d5e3bdc7f5a3cd9581ec46d0488 162 Pfam PF10135 Rod binding protein 106 150 8.8E-10 T 23-04-2016 IPR019301 Flagellar protein FlgJ, N-terminal RPE_RS16485 615c7c618bb196a36bbb5cb4b70d4a67 140 Pfam PF00334 Nucleoside diphosphate kinase 4 138 4.1E-50 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RPE_RS16485 615c7c618bb196a36bbb5cb4b70d4a67 140 Gene3D G3DSA:3.30.70.141 1 139 4.8E-52 T 23-04-2016 RPE_RS16485 615c7c618bb196a36bbb5cb4b70d4a67 140 SMART SM00562 3 140 3.0E-76 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RPE_RS16485 615c7c618bb196a36bbb5cb4b70d4a67 140 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 33.372 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RPE_RS16485 615c7c618bb196a36bbb5cb4b70d4a67 140 PANTHER PTHR11349 1 139 2.4E-62 T 23-04-2016 RPE_RS16485 615c7c618bb196a36bbb5cb4b70d4a67 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 9.4E-32 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RPE_RS16485 615c7c618bb196a36bbb5cb4b70d4a67 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 9.4E-32 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RPE_RS16485 615c7c618bb196a36bbb5cb4b70d4a67 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 9.4E-32 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RPE_RS16485 615c7c618bb196a36bbb5cb4b70d4a67 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 9.4E-32 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RPE_RS16485 615c7c618bb196a36bbb5cb4b70d4a67 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 9.4E-32 T 23-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RPE_RS16485 615c7c618bb196a36bbb5cb4b70d4a67 140 SUPERFAMILY SSF54919 1 139 6.55E-54 T 23-04-2016 RPE_RS16485 615c7c618bb196a36bbb5cb4b70d4a67 140 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 23-04-2016 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RPE_RS10320 7308c04affba48521caa64ed178f8221 135 Pfam PF13564 DoxX-like family 4 70 5.6E-7 T 23-04-2016 IPR032808 DoxX family RPE_RS20350 6fc50e1565eacca39b64f2c0ebbec03d 286 Gene3D G3DSA:3.90.1580.10 35 271 5.7E-33 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme RPE_RS20350 6fc50e1565eacca39b64f2c0ebbec03d 286 PANTHER PTHR23150 35 284 8.2E-29 T 23-04-2016 RPE_RS20350 6fc50e1565eacca39b64f2c0ebbec03d 286 SUPERFAMILY SSF56436 38 270 1.41E-41 T 23-04-2016 IPR016187 C-type lectin fold RPE_RS20350 6fc50e1565eacca39b64f2c0ebbec03d 286 Pfam PF03781 Sulfatase-modifying factor enzyme 1 37 268 8.3E-48 T 23-04-2016 IPR005532 Sulfatase-modifying factor enzyme RPE_RS20350 6fc50e1565eacca39b64f2c0ebbec03d 286 PANTHER PTHR23150:SF19 35 284 8.2E-29 T 23-04-2016 RPE_RS12140 9c440e997759cbbc19fd0aba81d5b71c 70 PRINTS PR00673 Light harvesting protein A chain signature 12 31 3.7E-11 T 23-04-2016 IPR018332 Antenna complex, alpha subunit RPE_RS12140 9c440e997759cbbc19fd0aba81d5b71c 70 PRINTS PR00673 Light harvesting protein A chain signature 31 42 3.7E-11 T 23-04-2016 IPR018332 Antenna complex, alpha subunit RPE_RS12140 9c440e997759cbbc19fd0aba81d5b71c 70 PRINTS PR00673 Light harvesting protein A chain signature 5 12 3.7E-11 T 23-04-2016 IPR018332 Antenna complex, alpha subunit RPE_RS12140 9c440e997759cbbc19fd0aba81d5b71c 70 Pfam PF00556 Antenna complex alpha/beta subunit 6 41 5.8E-12 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS12140 9c440e997759cbbc19fd0aba81d5b71c 70 Gene3D G3DSA:4.10.220.20 1 52 2.8E-28 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS12140 9c440e997759cbbc19fd0aba81d5b71c 70 SUPERFAMILY SSF56918 1 52 3.14E-20 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS18850 c31b3b188b0413db8ff99b6feea748f9 247 Gene3D G3DSA:3.90.550.10 6 246 6.3E-66 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS18850 c31b3b188b0413db8ff99b6feea748f9 247 Pfam PF02348 Cytidylyltransferase 8 218 4.8E-40 T 23-04-2016 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 RPE_RS18850 c31b3b188b0413db8ff99b6feea748f9 247 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 6 237 1.4E-62 T 23-04-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 RPE_RS18850 c31b3b188b0413db8ff99b6feea748f9 247 PANTHER PTHR21485 7 247 3.4E-90 T 23-04-2016 RPE_RS18850 c31b3b188b0413db8ff99b6feea748f9 247 SUPERFAMILY SSF53448 6 246 9.86E-55 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS18850 c31b3b188b0413db8ff99b6feea748f9 247 PANTHER PTHR21485:SF4 7 247 3.4E-90 T 23-04-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 RPE_RS18850 c31b3b188b0413db8ff99b6feea748f9 247 Hamap MF_00057 3-deoxy-manno-octulosonate cytidylyltransferase [kdsB]. 4 244 34.181 T 23-04-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 RPE_RS22960 df6b6ca02eebb96cf5c27fd75d969645 114 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 48 1.3E-13 T 23-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain RPE_RS22960 df6b6ca02eebb96cf5c27fd75d969645 114 Pfam PF09723 Zinc ribbon domain 1 40 4.9E-10 T 23-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain RPE_RS22960 df6b6ca02eebb96cf5c27fd75d969645 114 SMART SM00834 1 41 1.1E-11 T 23-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain RPE_RS13645 91dae1a008bcb64108b3d6e39f2fd336 326 Pfam PF16220 Domain of unknown function (DUF4880) 16 56 1.5E-11 T 23-04-2016 IPR032623 FecR, N-terminal RPE_RS13645 91dae1a008bcb64108b3d6e39f2fd336 326 PIRSF PIRSF018266 6 326 4.0E-58 T 23-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component RPE_RS13645 91dae1a008bcb64108b3d6e39f2fd336 326 Pfam PF16344 Domain of unknown function (DUF4974) 225 308 4.9E-7 T 23-04-2016 IPR032508 Protein FecR, C-terminal RPE_RS13645 91dae1a008bcb64108b3d6e39f2fd336 326 Pfam PF04773 FecR protein 125 215 1.1E-9 T 23-04-2016 IPR006860 FecR protein RPE_RS13645 91dae1a008bcb64108b3d6e39f2fd336 326 PANTHER PTHR30273 8 325 6.8E-39 T 23-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component RPE_RS01940 2e5dab186412d1490d2746654fbc3f41 293 Gene3D G3DSA:3.90.1530.10 33 132 3.7E-38 T 23-04-2016 RPE_RS01940 2e5dab186412d1490d2746654fbc3f41 293 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 32 204 4.4E-57 T 23-04-2016 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 RPE_RS01940 2e5dab186412d1490d2746654fbc3f41 293 SMART SM00470 34 126 3.3E-31 T 23-04-2016 IPR003115 ParB/Sulfiredoxin RPE_RS01940 2e5dab186412d1490d2746654fbc3f41 293 SUPERFAMILY SSF110849 34 174 1.94E-33 T 23-04-2016 IPR003115 ParB/Sulfiredoxin RPE_RS01940 2e5dab186412d1490d2746654fbc3f41 293 PANTHER PTHR33375 34 289 2.1E-82 T 23-04-2016 RPE_RS01940 2e5dab186412d1490d2746654fbc3f41 293 Pfam PF02195 ParB-like nuclease domain 35 125 2.5E-25 T 23-04-2016 IPR003115 ParB/Sulfiredoxin RPE_RS03615 135ff126fd2a59c29262d68acfbcb4dd 440 PANTHER PTHR11206:SF94 4 427 1.2E-111 T 23-04-2016 RPE_RS03615 135ff126fd2a59c29262d68acfbcb4dd 440 TIGRFAM TIGR00797 matE: MATE efflux family protein 17 409 2.2E-66 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RPE_RS03615 135ff126fd2a59c29262d68acfbcb4dd 440 Pfam PF01554 MatE 251 391 4.0E-13 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RPE_RS03615 135ff126fd2a59c29262d68acfbcb4dd 440 Pfam PF01554 MatE 17 174 2.6E-14 T 23-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 RPE_RS03615 135ff126fd2a59c29262d68acfbcb4dd 440 PANTHER PTHR11206 4 427 1.2E-111 T 23-04-2016 RPE_RS13545 1e41290931f7eba5eb092149dbc18c59 476 TIGRFAM TIGR00414 serS: serine--tRNA ligase 267 467 2.1E-92 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RPE_RS13545 1e41290931f7eba5eb092149dbc18c59 476 PANTHER PTHR11778 1 223 3.6E-184 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RPE_RS13545 1e41290931f7eba5eb092149dbc18c59 476 PANTHER PTHR11778 251 473 3.6E-184 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RPE_RS13545 1e41290931f7eba5eb092149dbc18c59 476 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 269 450 4.9E-35 T 23-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RPE_RS13545 1e41290931f7eba5eb092149dbc18c59 476 SUPERFAMILY SSF55681 272 468 8.6E-94 T 23-04-2016 RPE_RS13545 1e41290931f7eba5eb092149dbc18c59 476 SUPERFAMILY SSF55681 118 224 8.6E-94 T 23-04-2016 RPE_RS13545 1e41290931f7eba5eb092149dbc18c59 476 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 109 2.8E-28 T 23-04-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|UniPathway: UPA00906 RPE_RS13545 1e41290931f7eba5eb092149dbc18c59 476 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 472 38.469 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RPE_RS13545 1e41290931f7eba5eb092149dbc18c59 476 Gene3D G3DSA:1.10.287.40 1 106 2.6E-26 T 23-04-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|UniPathway: UPA00906 RPE_RS13545 1e41290931f7eba5eb092149dbc18c59 476 SUPERFAMILY SSF46589 1 114 1.2E-26 T 23-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 RPE_RS13545 1e41290931f7eba5eb092149dbc18c59 476 Gene3D G3DSA:3.30.930.10 267 471 1.2E-137 T 23-04-2016 RPE_RS13545 1e41290931f7eba5eb092149dbc18c59 476 Gene3D G3DSA:3.30.930.10 107 223 1.2E-137 T 23-04-2016 RPE_RS13545 1e41290931f7eba5eb092149dbc18c59 476 PRINTS PR00981 Seryl-tRNA synthetase signature 324 337 4.9E-27 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RPE_RS13545 1e41290931f7eba5eb092149dbc18c59 476 PRINTS PR00981 Seryl-tRNA synthetase signature 364 377 4.9E-27 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RPE_RS13545 1e41290931f7eba5eb092149dbc18c59 476 PRINTS PR00981 Seryl-tRNA synthetase signature 381 397 4.9E-27 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RPE_RS13545 1e41290931f7eba5eb092149dbc18c59 476 PRINTS PR00981 Seryl-tRNA synthetase signature 402 418 4.9E-27 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RPE_RS13545 1e41290931f7eba5eb092149dbc18c59 476 PRINTS PR00981 Seryl-tRNA synthetase signature 312 324 4.9E-27 T 23-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RPE_RS19615 a6f55d5e605a41fa2c5ef3a0816882b5 416 Gene3D G3DSA:3.20.20.450 150 396 2.6E-76 T 23-04-2016 IPR001633 EAL domain RPE_RS19615 a6f55d5e605a41fa2c5ef3a0816882b5 416 SMART SM00052 145 390 1.5E-73 T 23-04-2016 IPR001633 EAL domain RPE_RS19615 a6f55d5e605a41fa2c5ef3a0816882b5 416 SMART SM00448 11 127 4.4E-7 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS19615 a6f55d5e605a41fa2c5ef3a0816882b5 416 PANTHER PTHR33121:SF13 152 403 5.5E-65 T 23-04-2016 RPE_RS19615 a6f55d5e605a41fa2c5ef3a0816882b5 416 SUPERFAMILY SSF141868 152 395 4.18E-75 T 23-04-2016 IPR001633 EAL domain RPE_RS19615 a6f55d5e605a41fa2c5ef3a0816882b5 416 Pfam PF00563 EAL domain 151 384 7.5E-61 T 23-04-2016 IPR001633 EAL domain RPE_RS19615 a6f55d5e605a41fa2c5ef3a0816882b5 416 PANTHER PTHR33121 152 403 5.5E-65 T 23-04-2016 RPE_RS19615 a6f55d5e605a41fa2c5ef3a0816882b5 416 SUPERFAMILY SSF52172 11 130 1.57E-17 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS19615 a6f55d5e605a41fa2c5ef3a0816882b5 416 Pfam PF00072 Response regulator receiver domain 13 127 1.5E-11 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS19615 a6f55d5e605a41fa2c5ef3a0816882b5 416 Gene3D G3DSA:3.40.50.2300 7 128 1.2E-16 T 23-04-2016 RPE_RS18715 d9cc1efabd303e7d6c68d1b274fdae22 537 PANTHER PTHR11795:SF349 230 536 1.6E-166 T 23-04-2016 RPE_RS18715 d9cc1efabd303e7d6c68d1b274fdae22 537 Pfam PF02653 Branched-chain amino acid transport system / permease component 247 519 5.5E-53 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RPE_RS18715 d9cc1efabd303e7d6c68d1b274fdae22 537 PANTHER PTHR11795 230 536 1.6E-166 T 23-04-2016 RPE_RS18715 d9cc1efabd303e7d6c68d1b274fdae22 537 TIGRFAM TIGR03409 urea_trans_UrtB: urea ABC transporter, permease protein UrtB 243 533 2.7E-131 T 23-04-2016 IPR017779 ABC transporter, urea permease protein UrtB, bacterial-type RPE_RS06910 1e9dc798b89fc3b119432795d717cc5e 160 SUPERFAMILY SSF54593 3 156 8.88E-51 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RPE_RS06910 1e9dc798b89fc3b119432795d717cc5e 160 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 3 117 1.3E-46 T 23-04-2016 IPR028973 3-demethylubiquinone-9 3-methyltransferase RPE_RS06910 1e9dc798b89fc3b119432795d717cc5e 160 Gene3D G3DSA:3.10.180.10 1 129 1.0E-46 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RPE_RS06910 1e9dc798b89fc3b119432795d717cc5e 160 PANTHER PTHR33990:SF2 1 158 1.4E-88 T 23-04-2016 RPE_RS06910 1e9dc798b89fc3b119432795d717cc5e 160 PIRSF PIRSF021700 1 157 8.5E-64 T 23-04-2016 IPR009725 Predicted 3-demethylubiquinone-9 3-methyltransferase RPE_RS06910 1e9dc798b89fc3b119432795d717cc5e 160 PANTHER PTHR33990 1 158 1.4E-88 T 23-04-2016 RPE_RS05785 4b5e130f70818ded11a8895042f24e6e 152 PANTHER PTHR33217 1 145 1.2E-44 T 23-04-2016 RPE_RS05785 4b5e130f70818ded11a8895042f24e6e 152 PANTHER PTHR33217:SF2 1 145 1.2E-44 T 23-04-2016 RPE_RS05785 4b5e130f70818ded11a8895042f24e6e 152 Pfam PF00872 Transposase, Mutator family 1 124 4.6E-38 T 23-04-2016 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 RPE_RS13735 309545af01689fd42d9a3fab0944817b 436 SUPERFAMILY SSF51905 387 418 1.38E-48 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS13735 309545af01689fd42d9a3fab0944817b 436 SUPERFAMILY SSF51905 1 304 1.38E-48 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS13735 309545af01689fd42d9a3fab0944817b 436 PANTHER PTHR10742 1 418 1.1E-129 T 23-04-2016 RPE_RS13735 309545af01689fd42d9a3fab0944817b 436 Pfam PF01593 Flavin containing amine oxidoreductase 10 291 2.0E-17 T 23-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 RPE_RS13735 309545af01689fd42d9a3fab0944817b 436 PANTHER PTHR10742:SF299 1 418 1.1E-129 T 23-04-2016 RPE_RS13735 309545af01689fd42d9a3fab0944817b 436 Gene3D G3DSA:3.50.50.60 1 38 1.4E-27 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS13735 309545af01689fd42d9a3fab0944817b 436 Gene3D G3DSA:3.50.50.60 382 419 1.4E-27 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS13735 309545af01689fd42d9a3fab0944817b 436 Gene3D G3DSA:3.50.50.60 216 273 1.4E-27 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS13735 309545af01689fd42d9a3fab0944817b 436 Gene3D G3DSA:3.50.50.60 305 316 1.4E-27 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS00775 1cdc8b4c498858bb54409cbaf71142a7 296 SUPERFAMILY SSF56317 7 269 1.2E-76 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RPE_RS00775 1cdc8b4c498858bb54409cbaf71142a7 296 Pfam PF00795 Carbon-nitrogen hydrolase 8 262 2.8E-51 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RPE_RS00775 1cdc8b4c498858bb54409cbaf71142a7 296 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 155 175 - T 23-04-2016 IPR001110 Uncharacterised protein family UPF0012, conserved site RPE_RS00775 1cdc8b4c498858bb54409cbaf71142a7 296 PANTHER PTHR23088 6 271 2.0E-101 T 23-04-2016 RPE_RS00775 1cdc8b4c498858bb54409cbaf71142a7 296 Gene3D G3DSA:3.60.110.10 4 272 3.1E-81 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RPE_RS00775 1cdc8b4c498858bb54409cbaf71142a7 296 PANTHER PTHR23088:SF27 6 271 2.0E-101 T 23-04-2016 RPE_RS03475 face54803e7011bbfb7dcfabd6081a8f 337 PANTHER PTHR38418 1 215 4.9E-38 T 23-04-2016 RPE_RS03475 face54803e7011bbfb7dcfabd6081a8f 337 Gene3D G3DSA:3.10.580.10 212 334 1.2E-32 T 23-04-2016 RPE_RS03475 face54803e7011bbfb7dcfabd6081a8f 337 SMART SM00116 289 336 6.5E-4 T 23-04-2016 IPR000644 CBS domain RPE_RS03475 face54803e7011bbfb7dcfabd6081a8f 337 SMART SM00116 226 274 0.64 T 23-04-2016 IPR000644 CBS domain RPE_RS03475 face54803e7011bbfb7dcfabd6081a8f 337 SUPERFAMILY SSF53697 38 337 5.34E-56 T 23-04-2016 RPE_RS03475 face54803e7011bbfb7dcfabd6081a8f 337 Gene3D G3DSA:3.40.50.10490 28 208 6.3E-41 T 23-04-2016 RPE_RS03475 face54803e7011bbfb7dcfabd6081a8f 337 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 62 327 8.6E-91 T 23-04-2016 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 RPE_RS03475 face54803e7011bbfb7dcfabd6081a8f 337 Pfam PF01380 SIS domain 57 189 2.3E-26 T 23-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 RPE_RS03475 face54803e7011bbfb7dcfabd6081a8f 337 PANTHER PTHR38418:SF1 1 215 4.9E-38 T 23-04-2016 RPE_RS03475 face54803e7011bbfb7dcfabd6081a8f 337 PIRSF PIRSF004692 8 337 8.7E-123 T 23-04-2016 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 RPE_RS03475 face54803e7011bbfb7dcfabd6081a8f 337 Pfam PF00571 CBS domain 218 273 7.4E-6 T 23-04-2016 IPR000644 CBS domain RPE_RS03475 face54803e7011bbfb7dcfabd6081a8f 337 Pfam PF00571 CBS domain 282 334 3.0E-10 T 23-04-2016 IPR000644 CBS domain RPE_RS10255 e9309d7f2e119b93ca1da96f930f866b 196 PANTHER PTHR38596 1 191 2.4E-91 T 23-04-2016 RPE_RS10255 e9309d7f2e119b93ca1da96f930f866b 196 Hamap MF_00143 UPF0114 protein YqhA [yqhA]. 1 187 93.144 T 23-04-2016 IPR020765 Uncharacterised protein family UPF0114, gammaproteobacteria GO:0005886 RPE_RS10255 e9309d7f2e119b93ca1da96f930f866b 196 PANTHER PTHR38596:SF1 1 191 2.4E-91 T 23-04-2016 RPE_RS10255 e9309d7f2e119b93ca1da96f930f866b 196 Pfam PF03350 Uncharacterized protein family, UPF0114 23 139 3.3E-41 T 23-04-2016 IPR005134 Uncharacterised protein family UPF0114 RPE_RS10255 e9309d7f2e119b93ca1da96f930f866b 196 TIGRFAM TIGR00645 HI0507: TIGR00645 family protein 21 182 1.3E-57 T 23-04-2016 IPR020761 Uncharacterised protein family UPF0114, bacteria RPE_RS21750 34b929a3c0460537686c21e3d9e18b33 228 Pfam PF03734 L,D-transpeptidase catalytic domain 71 202 3.9E-16 T 23-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 RPE_RS21750 34b929a3c0460537686c21e3d9e18b33 228 Gene3D G3DSA:2.40.440.10 65 203 3.0E-31 T 23-04-2016 RPE_RS21750 34b929a3c0460537686c21e3d9e18b33 228 PANTHER PTHR30582 56 204 7.4E-53 T 23-04-2016 RPE_RS21750 34b929a3c0460537686c21e3d9e18b33 228 SUPERFAMILY SSF141523 65 203 1.44E-30 T 23-04-2016 RPE_RS21750 34b929a3c0460537686c21e3d9e18b33 228 PANTHER PTHR30582:SF1 56 204 7.4E-53 T 23-04-2016 RPE_RS18535 048fa2814bf39b1a69e6d1abe9b88915 158 PANTHER PTHR11592 1 158 4.2E-90 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 RPE_RS18535 048fa2814bf39b1a69e6d1abe9b88915 158 SUPERFAMILY SSF52833 3 158 3.75E-61 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS18535 048fa2814bf39b1a69e6d1abe9b88915 158 Gene3D G3DSA:3.40.30.10 3 158 5.1E-71 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS18535 048fa2814bf39b1a69e6d1abe9b88915 158 PIRSF PIRSF000303 1 158 1.7E-67 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 RPE_RS18535 048fa2814bf39b1a69e6d1abe9b88915 158 Pfam PF00255 Glutathione peroxidase 4 111 1.5E-41 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 RPE_RS18535 048fa2814bf39b1a69e6d1abe9b88915 158 ProSitePatterns PS00460 Glutathione peroxidases active site. 24 39 - T 23-04-2016 IPR029759 Glutathione peroxidase active site RPE_RS18535 048fa2814bf39b1a69e6d1abe9b88915 158 PRINTS PR01011 Glutathione peroxidase family signature 122 131 4.5E-19 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 RPE_RS18535 048fa2814bf39b1a69e6d1abe9b88915 158 PRINTS PR01011 Glutathione peroxidase family signature 22 39 4.5E-19 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 RPE_RS18535 048fa2814bf39b1a69e6d1abe9b88915 158 PRINTS PR01011 Glutathione peroxidase family signature 57 73 4.5E-19 T 23-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 RPE_RS14220 b52409b49965926d086446d6bd788afe 59 Gene3D G3DSA:4.10.220.20 1 52 2.6E-30 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS14220 b52409b49965926d086446d6bd788afe 59 SUPERFAMILY SSF56918 1 50 3.92E-21 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS14220 b52409b49965926d086446d6bd788afe 59 PRINTS PR00673 Light harvesting protein A chain signature 5 12 9.5E-11 T 23-04-2016 IPR018332 Antenna complex, alpha subunit RPE_RS14220 b52409b49965926d086446d6bd788afe 59 PRINTS PR00673 Light harvesting protein A chain signature 12 31 9.5E-11 T 23-04-2016 IPR018332 Antenna complex, alpha subunit RPE_RS14220 b52409b49965926d086446d6bd788afe 59 PRINTS PR00673 Light harvesting protein A chain signature 31 42 9.5E-11 T 23-04-2016 IPR018332 Antenna complex, alpha subunit RPE_RS14220 b52409b49965926d086446d6bd788afe 59 Pfam PF00556 Antenna complex alpha/beta subunit 6 41 4.8E-14 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS18955 588869afc508febc8ae174a1d1227865 180 Pfam PF11322 Protein of unknown function (DUF3124) 54 172 3.8E-41 T 23-04-2016 IPR021471 Protein of unknown function DUF3124 RPE_RS06965 96286333a6ea720d676b87bc35612cab 109 Pfam PF09928 Predicted small integral membrane protein (DUF2160) 6 109 4.7E-34 T 23-04-2016 IPR018678 Protein of unknown function DUF2160, transmembrane RPE_RS18815 2d227dc0f98f82fe79b64f3a305e729d 149 Pfam PF01850 PIN domain 9 126 4.7E-6 T 23-04-2016 IPR002716 PIN domain RPE_RS18815 2d227dc0f98f82fe79b64f3a305e729d 149 SUPERFAMILY SSF88723 8 126 6.87E-10 T 23-04-2016 IPR029060 PIN domain-like RPE_RS13375 811a435f69dca91ddfb60dc5e8f2f807 291 Pfam PF03934 Type II secretion system (T2SS), protein K 170 237 3.3E-6 T 23-04-2016 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 RPE_RS02555 b7a6cbe8fb15febd7318c8b95a508039 673 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 481 666 8.3E-34 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS02555 b7a6cbe8fb15febd7318c8b95a508039 673 SUPERFAMILY SSF158472 324 373 8.89E-6 T 23-04-2016 RPE_RS02555 b7a6cbe8fb15febd7318c8b95a508039 673 PANTHER PTHR32089:SF40 391 670 1.0E-165 T 23-04-2016 RPE_RS02555 b7a6cbe8fb15febd7318c8b95a508039 673 PANTHER PTHR32089:SF40 232 358 1.0E-165 T 23-04-2016 RPE_RS02555 b7a6cbe8fb15febd7318c8b95a508039 673 SUPERFAMILY SSF58104 419 666 9.94E-59 T 23-04-2016 RPE_RS02555 b7a6cbe8fb15febd7318c8b95a508039 673 SMART SM00283 409 667 1.8E-50 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS02555 b7a6cbe8fb15febd7318c8b95a508039 673 PANTHER PTHR32089 391 670 1.0E-165 T 23-04-2016 RPE_RS02555 b7a6cbe8fb15febd7318c8b95a508039 673 PANTHER PTHR32089 232 358 1.0E-165 T 23-04-2016 RPE_RS02555 b7a6cbe8fb15febd7318c8b95a508039 673 Gene3D G3DSA:1.10.287.950 429 634 1.8E-46 T 23-04-2016 RPE_RS23805 9dee97e96c857ded852d1efc0f282944 96 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 5 89 1.9E-16 T 23-04-2016 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family RPE_RS23805 9dee97e96c857ded852d1efc0f282944 96 PANTHER PTHR33755 1 91 1.5E-18 T 23-04-2016 RPE_RS11615 31c98a4f59956c605e1edb5080be6022 72 Pfam PF11324 Protein of unknown function (DUF3126) 5 67 4.6E-32 T 23-04-2016 IPR021473 Protein of unknown function DUF3126 RPE_RS07045 33bfefd61f3de4d7032070fec0742394 164 Pfam PF00293 NUDIX domain 32 135 5.4E-14 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RPE_RS07045 33bfefd61f3de4d7032070fec0742394 164 Gene3D G3DSA:3.90.79.10 30 151 1.3E-20 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS07045 33bfefd61f3de4d7032070fec0742394 164 SUPERFAMILY SSF55811 13 152 8.26E-24 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS07045 33bfefd61f3de4d7032070fec0742394 164 PANTHER PTHR22769 19 137 1.2E-20 T 23-04-2016 RPE_RS01020 e49497ac1d3a40f0c05af292c9455aec 537 PANTHER PTHR38686 11 535 1.3E-64 T 23-04-2016 RPE_RS01020 e49497ac1d3a40f0c05af292c9455aec 537 Gene3D G3DSA:3.60.110.10 237 502 6.5E-31 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RPE_RS01020 e49497ac1d3a40f0c05af292c9455aec 537 Pfam PF00795 Carbon-nitrogen hydrolase 252 506 4.3E-26 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RPE_RS01020 e49497ac1d3a40f0c05af292c9455aec 537 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 78 483 2.1E-94 T 23-04-2016 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 UniPathway: UPA00666 RPE_RS01020 e49497ac1d3a40f0c05af292c9455aec 537 SUPERFAMILY SSF56317 243 514 1.83E-43 T 23-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RPE_RS01020 e49497ac1d3a40f0c05af292c9455aec 537 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 19 520 22.467 T 23-04-2016 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 UniPathway: UPA00666 RPE_RS11655 0c517b204f90c0e6e6d0e46e980e666d 223 SUPERFAMILY SSF55729 3 190 9.49E-40 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS11655 0c517b204f90c0e6e6d0e46e980e666d 223 PANTHER PTHR39322 2 214 2.6E-89 T 23-04-2016 RPE_RS11655 0c517b204f90c0e6e6d0e46e980e666d 223 PRINTS PR01549 Autoinducer synthesis protein signature 63 81 2.0E-12 T 23-04-2016 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 RPE_RS11655 0c517b204f90c0e6e6d0e46e980e666d 223 PRINTS PR01549 Autoinducer synthesis protein signature 96 108 2.0E-12 T 23-04-2016 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 RPE_RS11655 0c517b204f90c0e6e6d0e46e980e666d 223 PRINTS PR01549 Autoinducer synthesis protein signature 115 136 2.0E-12 T 23-04-2016 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 RPE_RS11655 0c517b204f90c0e6e6d0e46e980e666d 223 PRINTS PR01549 Autoinducer synthesis protein signature 19 38 2.0E-12 T 23-04-2016 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 RPE_RS11655 0c517b204f90c0e6e6d0e46e980e666d 223 PRINTS PR01549 Autoinducer synthesis protein signature 40 62 2.0E-12 T 23-04-2016 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 RPE_RS11655 0c517b204f90c0e6e6d0e46e980e666d 223 Pfam PF00765 Autoinducer synthase 12 183 1.6E-21 T 23-04-2016 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 RPE_RS11655 0c517b204f90c0e6e6d0e46e980e666d 223 Gene3D G3DSA:3.40.630.30 2 194 8.5E-56 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS11655 0c517b204f90c0e6e6d0e46e980e666d 223 PANTHER PTHR39322:SF1 2 214 2.6E-89 T 23-04-2016 RPE_RS09425 0a09113c8d97255b08ee0586ced451a3 222 Gene3D G3DSA:1.10.101.10 156 214 3.7E-8 T 23-04-2016 IPR002477 Peptidoglycan binding-like RPE_RS09425 0a09113c8d97255b08ee0586ced451a3 222 SUPERFAMILY SSF47090 157 217 3.14E-10 T 23-04-2016 IPR002477 Peptidoglycan binding-like RPE_RS09425 0a09113c8d97255b08ee0586ced451a3 222 Pfam PF01471 Putative peptidoglycan binding domain 161 207 8.1E-10 T 23-04-2016 IPR002477 Peptidoglycan binding-like RPE_RS00450 974af9a8b28c9a768fc3c0195f3ff2db 316 SUPERFAMILY SSF55166 54 315 4.79E-98 T 23-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain RPE_RS00450 974af9a8b28c9a768fc3c0195f3ff2db 316 Gene3D G3DSA:3.30.1380.10 54 315 3.5E-105 T 23-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain RPE_RS00450 974af9a8b28c9a768fc3c0195f3ff2db 316 Pfam PF03411 Penicillin-insensitive murein endopeptidase 69 314 8.4E-105 T 23-04-2016 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 RPE_RS00450 974af9a8b28c9a768fc3c0195f3ff2db 316 PIRSF PIRSF018455 9 316 4.4E-120 T 23-04-2016 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 RPE_RS24470 be55d09ad7c2191a662caf9072a96d1d 352 SUPERFAMILY SSF88713 216 308 7.79E-26 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RPE_RS24470 be55d09ad7c2191a662caf9072a96d1d 352 SUPERFAMILY SSF88713 54 133 7.79E-26 T 23-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RPE_RS24470 be55d09ad7c2191a662caf9072a96d1d 352 Gene3D G3DSA:3.20.20.370 69 133 1.6E-14 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RPE_RS24470 be55d09ad7c2191a662caf9072a96d1d 352 Gene3D G3DSA:3.20.20.370 216 298 1.6E-14 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RPE_RS24470 be55d09ad7c2191a662caf9072a96d1d 352 PANTHER PTHR34216:SF1 1 147 5.7E-80 T 23-04-2016 RPE_RS24470 be55d09ad7c2191a662caf9072a96d1d 352 PANTHER PTHR34216:SF1 211 350 5.7E-80 T 23-04-2016 RPE_RS24470 be55d09ad7c2191a662caf9072a96d1d 352 Pfam PF01522 Polysaccharide deacetylase 91 282 3.3E-21 T 23-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RPE_RS24470 be55d09ad7c2191a662caf9072a96d1d 352 PANTHER PTHR34216 1 147 5.7E-80 T 23-04-2016 RPE_RS24470 be55d09ad7c2191a662caf9072a96d1d 352 PANTHER PTHR34216 211 350 5.7E-80 T 23-04-2016 RPE_RS15900 6db5b4a5a097aec13e9c5f01a370ac3d 149 Gene3D G3DSA:3.10.129.10 13 136 8.5E-32 T 23-04-2016 IPR029069 HotDog domain RPE_RS15900 6db5b4a5a097aec13e9c5f01a370ac3d 149 SUPERFAMILY SSF54637 14 136 4.55E-28 T 23-04-2016 IPR029069 HotDog domain RPE_RS15900 6db5b4a5a097aec13e9c5f01a370ac3d 149 PANTHER PTHR11049:SF8 2 136 4.4E-42 T 23-04-2016 RPE_RS15900 6db5b4a5a097aec13e9c5f01a370ac3d 149 PANTHER PTHR11049 2 136 4.4E-42 T 23-04-2016 RPE_RS15900 6db5b4a5a097aec13e9c5f01a370ac3d 149 Pfam PF03061 Thioesterase superfamily 28 106 5.7E-12 T 23-04-2016 IPR006683 Thioesterase domain RPE_RS08020 13c8eaa3c7e7f340b58e7cba8efa04c9 961 SUPERFAMILY SSF53383 929 952 6.72E-100 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS08020 13c8eaa3c7e7f340b58e7cba8efa04c9 961 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 9 956 25.493 T 23-04-2016 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2 RPE_RS08020 13c8eaa3c7e7f340b58e7cba8efa04c9 961 PANTHER PTHR11773 15 957 0.0 T 23-04-2016 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 RPE_RS08020 13c8eaa3c7e7f340b58e7cba8efa04c9 961 PANTHER PTHR11773:SF1 15 957 0.0 T 23-04-2016 RPE_RS08020 13c8eaa3c7e7f340b58e7cba8efa04c9 961 Gene3D G3DSA:3.40.640.10 89 306 2.8E-13 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS08020 13c8eaa3c7e7f340b58e7cba8efa04c9 961 Gene3D G3DSA:3.40.640.10 498 732 5.4E-41 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS08020 13c8eaa3c7e7f340b58e7cba8efa04c9 961 SUPERFAMILY SSF53383 18 443 1.98E-106 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS08020 13c8eaa3c7e7f340b58e7cba8efa04c9 961 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 18 950 0.0 T 23-04-2016 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2 RPE_RS08020 13c8eaa3c7e7f340b58e7cba8efa04c9 961 Pfam PF02347 Glycine cleavage system P-protein 464 730 4.2E-10 T 23-04-2016 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 RPE_RS08020 13c8eaa3c7e7f340b58e7cba8efa04c9 961 Pfam PF02347 Glycine cleavage system P-protein 17 440 4.0E-176 T 23-04-2016 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 RPE_RS08020 13c8eaa3c7e7f340b58e7cba8efa04c9 961 SUPERFAMILY SSF53383 477 886 6.72E-100 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS06715 55e2f6821ee80b14f822d0f4417645d7 277 ProSitePatterns PS00244 Photosynthetic reaction center proteins signature. 167 193 - T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RPE_RS06715 55e2f6821ee80b14f822d0f4417645d7 277 TIGRFAM TIGR01157 pufL: photosynthetic reaction center L subunit 35 275 2.3E-138 T 23-04-2016 IPR005871 Photosynthetic reaction centre, L subunit GO:0019684|GO:0030077|GO:0045156 RPE_RS06715 55e2f6821ee80b14f822d0f4417645d7 277 Pfam PF00124 Photosynthetic reaction centre protein 30 275 8.7E-96 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RPE_RS06715 55e2f6821ee80b14f822d0f4417645d7 277 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 226 251 7.3E-61 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RPE_RS06715 55e2f6821ee80b14f822d0f4417645d7 277 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 117 139 7.3E-61 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RPE_RS06715 55e2f6821ee80b14f822d0f4417645d7 277 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 34 55 7.3E-61 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RPE_RS06715 55e2f6821ee80b14f822d0f4417645d7 277 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 84 112 7.3E-61 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RPE_RS06715 55e2f6821ee80b14f822d0f4417645d7 277 PRINTS PR00256 Bacterial photosynthetic reaction centre signature 173 199 7.3E-61 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RPE_RS06715 55e2f6821ee80b14f822d0f4417645d7 277 Gene3D G3DSA:1.20.85.10 167 276 1.0E-45 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RPE_RS06715 55e2f6821ee80b14f822d0f4417645d7 277 Gene3D G3DSA:1.20.85.10 5 164 1.6E-62 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RPE_RS06715 55e2f6821ee80b14f822d0f4417645d7 277 PANTHER PTHR33149:SF2 65 195 1.4E-30 T 23-04-2016 RPE_RS06715 55e2f6821ee80b14f822d0f4417645d7 277 PANTHER PTHR33149 65 195 1.4E-30 T 23-04-2016 RPE_RS06715 55e2f6821ee80b14f822d0f4417645d7 277 SUPERFAMILY SSF81483 3 276 6.54E-111 T 23-04-2016 IPR000484 Photosynthetic reaction centre, L/M GO:0009772|GO:0019684|GO:0045156 MetaCyc: PWY-101 RPE_RS14590 d2d3ef70745e8bce6b050d66c0f9a313 128 Pfam PF04430 Protein of unknown function (DUF498/DUF598) 17 125 7.3E-26 T 23-04-2016 IPR007523 NDUFAF3/Mth938 domain-containing protein RPE_RS14590 d2d3ef70745e8bce6b050d66c0f9a313 128 PANTHER PTHR21192:SF3 10 125 7.9E-50 T 23-04-2016 RPE_RS14590 d2d3ef70745e8bce6b050d66c0f9a313 128 PANTHER PTHR21192 10 125 7.9E-50 T 23-04-2016 IPR007523 NDUFAF3/Mth938 domain-containing protein RPE_RS14590 d2d3ef70745e8bce6b050d66c0f9a313 128 Gene3D G3DSA:3.40.1230.10 11 127 1.2E-34 T 23-04-2016 IPR007523 NDUFAF3/Mth938 domain-containing protein RPE_RS14590 d2d3ef70745e8bce6b050d66c0f9a313 128 SUPERFAMILY SSF64076 9 127 8.9E-36 T 23-04-2016 IPR007523 NDUFAF3/Mth938 domain-containing protein RPE_RS10585 9e4c796f125d7ce12e2a3014d883b8a4 111 PANTHER PTHR34477 12 109 2.7E-43 T 23-04-2016 RPE_RS10585 9e4c796f125d7ce12e2a3014d883b8a4 111 Gene3D G3DSA:3.40.1440.10 20 65 2.0E-6 T 23-04-2016 IPR027299 GIY-YIG domain RPE_RS10585 9e4c796f125d7ce12e2a3014d883b8a4 111 PANTHER PTHR34477:SF2 12 109 2.7E-43 T 23-04-2016 RPE_RS10585 9e4c796f125d7ce12e2a3014d883b8a4 111 Pfam PF01541 GIY-YIG catalytic domain 19 90 5.8E-13 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily RPE_RS10585 9e4c796f125d7ce12e2a3014d883b8a4 111 SMART SM00465 18 96 9.5E-5 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily RPE_RS10585 9e4c796f125d7ce12e2a3014d883b8a4 111 SUPERFAMILY SSF82771 20 104 1.44E-21 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily RPE_RS00595 4123a3ac7cb4393ef156ded302135cd2 355 SUPERFAMILY SSF47203 200 340 2.58E-27 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS00595 4123a3ac7cb4393ef156ded302135cd2 355 Gene3D G3DSA:1.20.140.10 200 320 6.7E-22 T 23-04-2016 RPE_RS00595 4123a3ac7cb4393ef156ded302135cd2 355 Gene3D G3DSA:1.10.540.10 10 91 2.4E-5 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS00595 4123a3ac7cb4393ef156ded302135cd2 355 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 200 319 6.0E-19 T 23-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RPE_RS00595 4123a3ac7cb4393ef156ded302135cd2 355 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 12 92 2.9E-4 T 23-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 RPE_RS00595 4123a3ac7cb4393ef156ded302135cd2 355 PANTHER PTHR10909 1 314 1.7E-92 T 23-04-2016 RPE_RS00595 4123a3ac7cb4393ef156ded302135cd2 355 SUPERFAMILY SSF56645 7 179 5.07E-12 T 23-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 RPE_RS00595 4123a3ac7cb4393ef156ded302135cd2 355 PANTHER PTHR10909:SF291 1 314 1.7E-92 T 23-04-2016 RPE_RS21115 e24c9d3cd705cb4b0fcd663013e12c90 276 Pfam PF00005 ABC transporter 20 182 1.7E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS21115 e24c9d3cd705cb4b0fcd663013e12c90 276 PANTHER PTHR24220:SF519 6 266 3.2E-162 T 23-04-2016 RPE_RS21115 e24c9d3cd705cb4b0fcd663013e12c90 276 SMART SM00382 29 231 7.9E-9 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS21115 e24c9d3cd705cb4b0fcd663013e12c90 276 PANTHER PTHR24220 6 266 3.2E-162 T 23-04-2016 RPE_RS21115 e24c9d3cd705cb4b0fcd663013e12c90 276 SUPERFAMILY SSF52540 3 254 5.86E-65 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS21115 e24c9d3cd705cb4b0fcd663013e12c90 276 Gene3D G3DSA:3.40.50.300 3 252 3.3E-68 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS21115 e24c9d3cd705cb4b0fcd663013e12c90 276 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 231 253 7.9E-10 T 23-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RPE_RS10395 51ee56909deaa4b92ca022c80ed31e99 65 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 65 6.4E-22 T 23-04-2016 IPR010035 ThiS, thiamine-biosynthesis RPE_RS10395 51ee56909deaa4b92ca022c80ed31e99 65 PANTHER PTHR34472:SF1 1 65 3.0E-19 T 23-04-2016 RPE_RS10395 51ee56909deaa4b92ca022c80ed31e99 65 SUPERFAMILY SSF54285 3 64 2.33E-16 T 23-04-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp RPE_RS10395 51ee56909deaa4b92ca022c80ed31e99 65 PANTHER PTHR34472 1 65 3.0E-19 T 23-04-2016 RPE_RS10395 51ee56909deaa4b92ca022c80ed31e99 65 Pfam PF02597 ThiS family 3 65 2.7E-14 T 23-04-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 RPE_RS10395 51ee56909deaa4b92ca022c80ed31e99 65 Gene3D G3DSA:3.10.20.30 1 65 1.3E-21 T 23-04-2016 IPR012675 Beta-grasp domain RPE_RS06875 6e1cbe7a32ddc3749253d9f3b4188c05 431 PANTHER PTHR11808:SF12 269 430 4.9E-227 T 23-04-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 RPE_RS06875 6e1cbe7a32ddc3749253d9f3b4188c05 431 PANTHER PTHR11808:SF12 3 239 4.9E-227 T 23-04-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 RPE_RS06875 6e1cbe7a32ddc3749253d9f3b4188c05 431 PANTHER PTHR11808 269 430 4.9E-227 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RPE_RS06875 6e1cbe7a32ddc3749253d9f3b4188c05 431 PANTHER PTHR11808 3 239 4.9E-227 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RPE_RS06875 6e1cbe7a32ddc3749253d9f3b4188c05 431 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 10 425 3.3E-139 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RPE_RS06875 6e1cbe7a32ddc3749253d9f3b4188c05 431 Gene3D G3DSA:3.40.640.10 8 290 1.6E-117 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS06875 6e1cbe7a32ddc3749253d9f3b4188c05 431 Gene3D G3DSA:3.90.1150.10 292 427 1.1E-47 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS06875 6e1cbe7a32ddc3749253d9f3b4188c05 431 PIRSF PIRSF001434 1 429 6.1E-129 T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RPE_RS06875 6e1cbe7a32ddc3749253d9f3b4188c05 431 SUPERFAMILY SSF53383 8 426 5.98E-128 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS06875 6e1cbe7a32ddc3749253d9f3b4188c05 431 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 202 216 - T 23-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 RPE_RS06875 6e1cbe7a32ddc3749253d9f3b4188c05 431 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 9 425 3.4E-187 T 23-04-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 RPE_RS22265 a844d12da89aabb8a5a7699dfc9cb227 591 PANTHER PTHR11918 51 539 6.6E-36 T 23-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein RPE_RS22265 a844d12da89aabb8a5a7699dfc9cb227 591 Pfam PF04055 Radical SAM superfamily 211 373 1.9E-15 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RPE_RS22265 a844d12da89aabb8a5a7699dfc9cb227 591 PANTHER PTHR11918:SF64 51 539 6.6E-36 T 23-04-2016 RPE_RS22265 a844d12da89aabb8a5a7699dfc9cb227 591 SUPERFAMILY SSF102114 163 411 4.71E-28 T 23-04-2016 RPE_RS22265 a844d12da89aabb8a5a7699dfc9cb227 591 Gene3D G3DSA:3.80.30.20 208 398 1.6E-27 T 23-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RPE_RS22265 a844d12da89aabb8a5a7699dfc9cb227 591 SMART SM00729 204 419 1.0E-12 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RPE_RS15700 95f90d7a504aec68579daeca94329b8d 176 PANTHER PTHR39332 17 176 2.0E-31 T 23-04-2016 RPE_RS15700 95f90d7a504aec68579daeca94329b8d 176 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 27 173 4.3E-30 T 23-04-2016 IPR019587 Polyketide cyclase/dehydrase RPE_RS15700 95f90d7a504aec68579daeca94329b8d 176 PANTHER PTHR39332:SF2 17 176 2.0E-31 T 23-04-2016 RPE_RS15700 95f90d7a504aec68579daeca94329b8d 176 Gene3D G3DSA:3.30.530.20 26 174 4.4E-38 T 23-04-2016 IPR023393 START-like domain RPE_RS15700 95f90d7a504aec68579daeca94329b8d 176 SUPERFAMILY SSF55961 26 174 3.67E-27 T 23-04-2016 RPE_RS16545 72ff8d904d69bd46ef9fa48de1dfd6e8 351 SUPERFAMILY SSF50129 4 178 1.51E-40 T 23-04-2016 IPR011032 GroES-like RPE_RS16545 72ff8d904d69bd46ef9fa48de1dfd6e8 351 SMART SM00829 7 349 5.2E-4 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RPE_RS16545 72ff8d904d69bd46ef9fa48de1dfd6e8 351 Pfam PF00107 Zinc-binding dehydrogenase 188 312 5.8E-23 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RPE_RS16545 72ff8d904d69bd46ef9fa48de1dfd6e8 351 PANTHER PTHR11695 16 349 1.1E-151 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RPE_RS16545 72ff8d904d69bd46ef9fa48de1dfd6e8 351 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 73 87 - T 23-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 RPE_RS16545 72ff8d904d69bd46ef9fa48de1dfd6e8 351 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 142 4.1E-30 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RPE_RS16545 72ff8d904d69bd46ef9fa48de1dfd6e8 351 SUPERFAMILY SSF51735 150 322 1.79E-33 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS16545 72ff8d904d69bd46ef9fa48de1dfd6e8 351 Gene3D G3DSA:3.40.50.720 194 298 8.4E-24 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS16545 72ff8d904d69bd46ef9fa48de1dfd6e8 351 Gene3D G3DSA:3.90.180.10 6 193 5.4E-45 T 23-04-2016 IPR011032 GroES-like RPE_RS16545 72ff8d904d69bd46ef9fa48de1dfd6e8 351 PANTHER PTHR11695:SF587 16 349 1.1E-151 T 23-04-2016 RPE_RS23010 8ee6b401949eddc027bfacff5cedf976 130 PANTHER PTHR41553 7 130 5.6E-18 T 23-04-2016 RPE_RS23010 8ee6b401949eddc027bfacff5cedf976 130 PANTHER PTHR41553:SF1 7 130 5.6E-18 T 23-04-2016 RPE_RS23010 8ee6b401949eddc027bfacff5cedf976 130 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 11 125 1.4E-23 T 23-04-2016 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III RPE_RS07710 ba438d63d268571b10067d72449302fc 136 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 94 128 2.8E-12 T 23-04-2016 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 RPE_RS07710 ba438d63d268571b10067d72449302fc 136 SUPERFAMILY SSF57716 95 134 3.56E-9 T 23-04-2016 RPE_RS07710 ba438d63d268571b10067d72449302fc 136 PANTHER PTHR33823:SF2 4 134 1.7E-45 T 23-04-2016 RPE_RS07710 ba438d63d268571b10067d72449302fc 136 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 12 134 28.459 T 23-04-2016 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 RPE_RS07710 ba438d63d268571b10067d72449302fc 136 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 98 122 - T 23-04-2016 IPR020458 Zinc finger, DksA/TraR C4-type conserved site RPE_RS07710 ba438d63d268571b10067d72449302fc 136 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 16 125 9.7E-45 T 23-04-2016 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 RPE_RS07710 ba438d63d268571b10067d72449302fc 136 SUPERFAMILY SSF109635 4 94 6.8E-32 T 23-04-2016 RPE_RS07710 ba438d63d268571b10067d72449302fc 136 PANTHER PTHR33823 4 134 1.7E-45 T 23-04-2016 RPE_RS03225 538c712e131caef58a032c0c17233f7c 216 Pfam PF01926 50S ribosome-binding GTPase 40 160 2.5E-20 T 23-04-2016 IPR006073 GTP binding domain GO:0005525 RPE_RS03225 538c712e131caef58a032c0c17233f7c 216 Gene3D G3DSA:3.40.50.300 35 213 3.0E-40 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS03225 538c712e131caef58a032c0c17233f7c 216 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 22 208 1.1E-62 T 23-04-2016 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0000917|GO:0005525 RPE_RS03225 538c712e131caef58a032c0c17233f7c 216 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 26 212 25.792 T 23-04-2016 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0000917|GO:0005525 RPE_RS03225 538c712e131caef58a032c0c17233f7c 216 SUPERFAMILY SSF52540 34 212 3.17E-33 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS03225 538c712e131caef58a032c0c17233f7c 216 PANTHER PTHR11649 1 215 2.4E-54 T 23-04-2016 RPE_RS21910 f1501003c617919369069c4200fc4c9e 258 SUPERFAMILY SSF143081 2 220 6.02E-75 T 23-04-2016 IPR003738 SOS response associated peptidase (SRAP) KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RPE_RS21910 f1501003c617919369069c4200fc4c9e 258 PANTHER PTHR13604 2 226 1.8E-84 T 23-04-2016 IPR003738 SOS response associated peptidase (SRAP) KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RPE_RS21910 f1501003c617919369069c4200fc4c9e 258 Pfam PF02586 SOS response associated peptidase (SRAP) 1 209 2.2E-65 T 23-04-2016 IPR003738 SOS response associated peptidase (SRAP) KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RPE_RS21910 f1501003c617919369069c4200fc4c9e 258 Gene3D G3DSA:3.90.1680.10 1 219 8.2E-73 T 23-04-2016 IPR003738 SOS response associated peptidase (SRAP) KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RPE_RS07815 a18b2c428980eaa76e234aa1c3582ba9 87 PANTHER PTHR34040:SF2 1 86 4.6E-24 T 23-04-2016 RPE_RS07815 a18b2c428980eaa76e234aa1c3582ba9 87 PIRSF PIRSF004669 1 87 3.6E-27 T 23-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RPE_RS07815 a18b2c428980eaa76e234aa1c3582ba9 87 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 84 5.2E-28 T 23-04-2016 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 RPE_RS07815 a18b2c428980eaa76e234aa1c3582ba9 87 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 4.7E-19 T 23-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RPE_RS07815 a18b2c428980eaa76e234aa1c3582ba9 87 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 4.7E-19 T 23-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RPE_RS07815 a18b2c428980eaa76e234aa1c3582ba9 87 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 4.7E-19 T 23-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RPE_RS07815 a18b2c428980eaa76e234aa1c3582ba9 87 Pfam PF01313 Bacterial export proteins, family 3 6 77 3.2E-28 T 23-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RPE_RS07815 a18b2c428980eaa76e234aa1c3582ba9 87 PANTHER PTHR34040 1 86 4.6E-24 T 23-04-2016 RPE_RS03100 c95433d3812cae7c28e9fe5b0c98b8cc 448 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 182 238 - T 23-04-2016 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS03100 c95433d3812cae7c28e9fe5b0c98b8cc 448 Gene3D G3DSA:1.20.210.10 3 435 2.4E-25 T 23-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS03100 c95433d3812cae7c28e9fe5b0c98b8cc 448 SUPERFAMILY SSF81442 3 437 7.46E-93 T 23-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS03100 c95433d3812cae7c28e9fe5b0c98b8cc 448 PANTHER PTHR10422 33 437 2.1E-132 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS03100 c95433d3812cae7c28e9fe5b0c98b8cc 448 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 7 415 1.3E-81 T 23-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RPE_RS03100 c95433d3812cae7c28e9fe5b0c98b8cc 448 PANTHER PTHR10422:SF24 33 437 2.1E-132 T 23-04-2016 RPE_RS11025 f960de23453f844e6db8a8dbaaae6f51 289 Gene3D G3DSA:3.30.1150.10 172 286 1.2E-8 T 23-04-2016 RPE_RS22965 bf8a096f10bbe6551ff725d7a2c2ca61 409 SUPERFAMILY SSF141130 15 164 1.07E-78 T 23-04-2016 RPE_RS22965 bf8a096f10bbe6551ff725d7a2c2ca61 409 SUPERFAMILY SSF141130 213 383 1.07E-78 T 23-04-2016 RPE_RS22965 bf8a096f10bbe6551ff725d7a2c2ca61 409 PANTHER PTHR31891 1 405 1.4E-245 T 23-04-2016 RPE_RS22965 bf8a096f10bbe6551ff725d7a2c2ca61 409 Pfam PF03069 Acetamidase/Formamidase family 7 384 5.9E-175 T 23-04-2016 IPR004304 Acetamidase/Formamidase GO:0016811 RPE_RS22965 bf8a096f10bbe6551ff725d7a2c2ca61 409 Gene3D G3DSA:2.60.120.580 147 164 1.1E-65 T 23-04-2016 RPE_RS22965 bf8a096f10bbe6551ff725d7a2c2ca61 409 Gene3D G3DSA:2.60.120.580 5 94 1.1E-65 T 23-04-2016 RPE_RS22965 bf8a096f10bbe6551ff725d7a2c2ca61 409 Gene3D G3DSA:2.60.120.580 213 281 1.1E-65 T 23-04-2016 RPE_RS22965 bf8a096f10bbe6551ff725d7a2c2ca61 409 PANTHER PTHR31891:SF1 1 405 1.4E-245 T 23-04-2016 RPE_RS02210 b78f6e16e014f1d90fe3eca86991bbba 438 PANTHER PTHR30061:SF7 1 434 7.2E-138 T 23-04-2016 RPE_RS02210 b78f6e16e014f1d90fe3eca86991bbba 438 Gene3D G3DSA:3.40.190.10 147 355 1.6E-34 T 23-04-2016 RPE_RS02210 b78f6e16e014f1d90fe3eca86991bbba 438 PANTHER PTHR30061 1 434 7.2E-138 T 23-04-2016 RPE_RS02210 b78f6e16e014f1d90fe3eca86991bbba 438 Pfam PF13416 Bacterial extracellular solute-binding protein 44 357 3.0E-36 T 23-04-2016 RPE_RS02210 b78f6e16e014f1d90fe3eca86991bbba 438 SUPERFAMILY SSF53850 26 424 2.03E-68 T 23-04-2016 RPE_RS00900 250eb662cb870ac4bd68930996da2fbf 146 SMART SM01034 4 100 1.7E-49 T 23-04-2016 IPR007024 BLUF domain GO:0009882|GO:0071949 RPE_RS00900 250eb662cb870ac4bd68930996da2fbf 146 SUPERFAMILY SSF54975 2 106 3.6E-35 T 23-04-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 RPE_RS00900 250eb662cb870ac4bd68930996da2fbf 146 Pfam PF04940 Sensors of blue-light using FAD 4 99 1.6E-28 T 23-04-2016 IPR007024 BLUF domain GO:0009882|GO:0071949 RPE_RS06905 299f7c7ca36e8089abfe4ec182704302 143 Gene3D G3DSA:3.10.180.10 2 130 2.7E-29 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RPE_RS06905 299f7c7ca36e8089abfe4ec182704302 143 PANTHER PTHR36503 1 143 5.9E-62 T 23-04-2016 RPE_RS06905 299f7c7ca36e8089abfe4ec182704302 143 SUPERFAMILY SSF54593 4 130 7.19E-23 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RPE_RS06905 299f7c7ca36e8089abfe4ec182704302 143 PANTHER PTHR36503:SF2 1 143 5.9E-62 T 23-04-2016 RPE_RS18235 b1e452d561721e040daca3e80e2b517a 289 Gene3D G3DSA:3.50.50.60 228 288 8.8E-40 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS18235 b1e452d561721e040daca3e80e2b517a 289 Gene3D G3DSA:3.50.50.60 3 115 8.8E-40 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS18235 b1e452d561721e040daca3e80e2b517a 289 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 6 28 4.3E-25 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RPE_RS18235 b1e452d561721e040daca3e80e2b517a 289 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 141 165 4.3E-25 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RPE_RS18235 b1e452d561721e040daca3e80e2b517a 289 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 126 138 4.3E-25 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RPE_RS18235 b1e452d561721e040daca3e80e2b517a 289 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 37 52 4.3E-25 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RPE_RS18235 b1e452d561721e040daca3e80e2b517a 289 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 103 111 4.3E-25 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RPE_RS18235 b1e452d561721e040daca3e80e2b517a 289 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 253 271 4.3E-25 T 23-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RPE_RS18235 b1e452d561721e040daca3e80e2b517a 289 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 243 265 1.8E-21 T 23-04-2016 RPE_RS18235 b1e452d561721e040daca3e80e2b517a 289 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 1.8E-21 T 23-04-2016 RPE_RS18235 b1e452d561721e040daca3e80e2b517a 289 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 145 163 1.8E-21 T 23-04-2016 RPE_RS18235 b1e452d561721e040daca3e80e2b517a 289 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 1.8E-21 T 23-04-2016 RPE_RS18235 b1e452d561721e040daca3e80e2b517a 289 SUPERFAMILY SSF51905 126 224 2.72E-6 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS18235 b1e452d561721e040daca3e80e2b517a 289 PANTHER PTHR22912:SF48 1 285 3.8E-36 T 23-04-2016 RPE_RS18235 b1e452d561721e040daca3e80e2b517a 289 Gene3D G3DSA:3.50.50.60 116 206 1.5E-12 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS18235 b1e452d561721e040daca3e80e2b517a 289 SUPERFAMILY SSF51905 219 287 1.3E-36 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS18235 b1e452d561721e040daca3e80e2b517a 289 SUPERFAMILY SSF51905 5 154 1.3E-36 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS18235 b1e452d561721e040daca3e80e2b517a 289 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 277 3.3E-25 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS18235 b1e452d561721e040daca3e80e2b517a 289 PANTHER PTHR22912 1 285 3.8E-36 T 23-04-2016 RPE_RS06075 82930319b6ee8c2b1722e406543f2347 379 SMART SM00283 58 311 0.0092 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS06075 82930319b6ee8c2b1722e406543f2347 379 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 137 229 2.7E-16 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS06075 82930319b6ee8c2b1722e406543f2347 379 Gene3D G3DSA:1.10.287.950 75 298 1.4E-26 T 23-04-2016 RPE_RS06075 82930319b6ee8c2b1722e406543f2347 379 SUPERFAMILY SSF58104 35 308 3.53E-23 T 23-04-2016 RPE_RS20125 754179046091b52bb0c05c52970b4494 583 Pfam PF11843 Protein of unknown function (DUF3363) 404 582 1.4E-56 T 23-04-2016 IPR021795 Protein of unknown function DUF3363 RPE_RS20125 754179046091b52bb0c05c52970b4494 583 Pfam PF11843 Protein of unknown function (DUF3363) 283 404 6.1E-33 T 23-04-2016 IPR021795 Protein of unknown function DUF3363 RPE_RS18310 209a68e2c63c43c1f599f95f19cd7a84 175 PANTHER PTHR11717:SF18 4 160 8.9E-31 T 23-04-2016 RPE_RS18310 209a68e2c63c43c1f599f95f19cd7a84 175 Gene3D G3DSA:3.40.50.270 5 141 5.1E-38 T 23-04-2016 RPE_RS18310 209a68e2c63c43c1f599f95f19cd7a84 175 SUPERFAMILY SSF52788 6 143 1.83E-37 T 23-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily RPE_RS18310 209a68e2c63c43c1f599f95f19cd7a84 175 PANTHER PTHR11717 4 160 8.9E-31 T 23-04-2016 RPE_RS18310 209a68e2c63c43c1f599f95f19cd7a84 175 SMART SM00226 6 144 2.1E-30 T 23-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily RPE_RS18310 209a68e2c63c43c1f599f95f19cd7a84 175 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 8 126 1.8E-17 T 23-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily RPE_RS19240 608b308eab9592a74e4efd5318d4dcc2 264 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 264 46.967 T 23-04-2016 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148 RPE_RS19240 608b308eab9592a74e4efd5318d4dcc2 264 PANTHER PTHR34148 12 261 5.6E-53 T 23-04-2016 RPE_RS19240 608b308eab9592a74e4efd5318d4dcc2 264 Pfam PF02654 Cobalamin-5-phosphate synthase 26 257 3.1E-47 T 23-04-2016 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148 RPE_RS19240 608b308eab9592a74e4efd5318d4dcc2 264 TIGRFAM TIGR00317 cobS: cobalamin 5'-phosphate synthase 19 258 9.8E-38 T 23-04-2016 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148 RPE_RS19240 608b308eab9592a74e4efd5318d4dcc2 264 PANTHER PTHR34148:SF1 12 261 5.6E-53 T 23-04-2016 RPE_RS22770 a26cbc954d1f64afba45b0f31b5367c4 163 PANTHER PTHR30529 1 163 6.6E-15 T 23-04-2016 RPE_RS22770 a26cbc954d1f64afba45b0f31b5367c4 163 SUPERFAMILY SSF81342 1 160 6.28E-20 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 RPE_RS22770 a26cbc954d1f64afba45b0f31b5367c4 163 Pfam PF01292 Prokaryotic cytochrome b561 7 160 5.5E-18 T 23-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 RPE_RS10175 c3fe40b06e495a234343b2005fd2ccba 197 PANTHER PTHR13256 1 195 1.1E-88 T 23-04-2016 RPE_RS10175 c3fe40b06e495a234343b2005fd2ccba 197 SUPERFAMILY SSF55729 4 177 2.25E-35 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS10175 c3fe40b06e495a234343b2005fd2ccba 197 PANTHER PTHR13256:SF20 1 195 1.1E-88 T 23-04-2016 RPE_RS10175 c3fe40b06e495a234343b2005fd2ccba 197 Gene3D G3DSA:3.40.630.30 1 192 1.3E-56 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS10175 c3fe40b06e495a234343b2005fd2ccba 197 Pfam PF13302 Acetyltransferase (GNAT) domain 15 152 3.2E-12 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RPE_RS08085 3f192fc0ff6705a502e8b0efc9d239c9 107 PIRSF PIRSF031780 1 107 1.8E-44 T 23-04-2016 IPR009945 Protein of unknown function DUF1476 RPE_RS08085 3f192fc0ff6705a502e8b0efc9d239c9 107 Pfam PF07345 Domain of unknown function (DUF1476) 1 101 1.7E-40 T 23-04-2016 IPR009945 Protein of unknown function DUF1476 RPE_RS01055 c1ea94bb0e36dba0ef72ba65121e20e0 161 PANTHER PTHR23091 13 161 2.5E-28 T 23-04-2016 RPE_RS01055 c1ea94bb0e36dba0ef72ba65121e20e0 161 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 26 156 2.9E-29 T 23-04-2016 IPR006464 Ribosomal-protein-alanine acetyltransferase GO:0006474|GO:0016407 RPE_RS01055 c1ea94bb0e36dba0ef72ba65121e20e0 161 Pfam PF00583 Acetyltransferase (GNAT) family 61 134 7.2E-14 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RPE_RS01055 c1ea94bb0e36dba0ef72ba65121e20e0 161 SUPERFAMILY SSF55729 18 160 4.49E-28 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS01055 c1ea94bb0e36dba0ef72ba65121e20e0 161 Gene3D G3DSA:3.40.630.30 16 160 1.9E-29 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS01055 c1ea94bb0e36dba0ef72ba65121e20e0 161 PANTHER PTHR23091:SF122 13 161 2.5E-28 T 23-04-2016 RPE_RS21445 905f64240bb8d1dbb18a2ccf7d1ad751 232 PANTHER PTHR24220:SF66 6 223 7.2E-69 T 23-04-2016 RPE_RS21445 905f64240bb8d1dbb18a2ccf7d1ad751 232 Gene3D G3DSA:3.40.50.300 4 223 1.6E-57 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS21445 905f64240bb8d1dbb18a2ccf7d1ad751 232 SUPERFAMILY SSF52540 3 222 3.82E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS21445 905f64240bb8d1dbb18a2ccf7d1ad751 232 SMART SM00382 30 213 2.7E-12 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS21445 905f64240bb8d1dbb18a2ccf7d1ad751 232 Pfam PF00005 ABC transporter 21 168 4.4E-30 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS21445 905f64240bb8d1dbb18a2ccf7d1ad751 232 PANTHER PTHR24220 6 223 7.2E-69 T 23-04-2016 RPE_RS21445 905f64240bb8d1dbb18a2ccf7d1ad751 232 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS00195 e2f2e5506f580dadd9a78f76a085594c 324 Pfam PF00107 Zinc-binding dehydrogenase 151 269 7.1E-28 T 23-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RPE_RS00195 e2f2e5506f580dadd9a78f76a085594c 324 SMART SM00829 11 322 7.0E-36 T 23-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RPE_RS00195 e2f2e5506f580dadd9a78f76a085594c 324 PANTHER PTHR11695 15 324 5.0E-117 T 23-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 RPE_RS00195 e2f2e5506f580dadd9a78f76a085594c 324 PANTHER PTHR11695:SF31 15 324 5.0E-117 T 23-04-2016 RPE_RS00195 e2f2e5506f580dadd9a78f76a085594c 324 SUPERFAMILY SSF51735 112 279 5.92E-49 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS00195 e2f2e5506f580dadd9a78f76a085594c 324 Gene3D G3DSA:3.90.180.10 1 145 8.0E-43 T 23-04-2016 IPR011032 GroES-like RPE_RS00195 e2f2e5506f580dadd9a78f76a085594c 324 Gene3D G3DSA:3.40.50.720 146 262 4.9E-37 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS00195 e2f2e5506f580dadd9a78f76a085594c 324 SUPERFAMILY SSF50129 1 139 1.73E-36 T 23-04-2016 IPR011032 GroES-like RPE_RS00195 e2f2e5506f580dadd9a78f76a085594c 324 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 90 5.9E-11 T 23-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RPE_RS20295 3f6e1cfe30c9bceb0ed79886069c5da4 145 TIGRFAM TIGR01985 phasin_2: phasin 17 138 9.6E-39 T 23-04-2016 IPR010234 Phasin, subfamily 2 RPE_RS20295 3f6e1cfe30c9bceb0ed79886069c5da4 145 Pfam PF09361 Phasin protein 39 134 8.8E-23 T 23-04-2016 IPR018968 Phasin RPE_RS20295 3f6e1cfe30c9bceb0ed79886069c5da4 145 TIGRFAM TIGR01841 phasin: phasin family protein 66 137 2.6E-9 T 23-04-2016 IPR010127 Phasin, subfamily 1 RPE_RS24240 b7b82a5490c551d1574ab1853a43bece 297 PANTHER PTHR30213:SF1 5 277 2.6E-56 T 23-04-2016 RPE_RS24240 b7b82a5490c551d1574ab1853a43bece 297 Pfam PF03631 Virulence factor BrkB 21 275 5.3E-49 T 23-04-2016 IPR017039 Virulence factor BrkB RPE_RS24240 b7b82a5490c551d1574ab1853a43bece 297 PIRSF PIRSF035875 2 295 6.5E-58 T 23-04-2016 IPR017039 Virulence factor BrkB RPE_RS24240 b7b82a5490c551d1574ab1853a43bece 297 PANTHER PTHR30213 5 277 2.6E-56 T 23-04-2016 RPE_RS07080 dd8d76358bc7dc127c8a9c303ce839f4 178 Pfam PF12276 Protein of unknown function (DUF3617) 12 147 1.2E-7 T 23-04-2016 IPR022061 Protein of unknown function DUF3617 RPE_RS04755 49c36a4bc49ac09edf5be8e619d2df57 418 Pfam PF01743 Poly A polymerase head domain 33 154 5.9E-26 T 23-04-2016 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 RPE_RS04755 49c36a4bc49ac09edf5be8e619d2df57 418 Gene3D G3DSA:1.10.3090.10 152 376 2.1E-33 T 23-04-2016 RPE_RS04755 49c36a4bc49ac09edf5be8e619d2df57 418 Gene3D G3DSA:3.30.460.10 18 150 1.8E-38 T 23-04-2016 RPE_RS04755 49c36a4bc49ac09edf5be8e619d2df57 418 SUPERFAMILY SSF81891 152 403 4.19E-41 T 23-04-2016 RPE_RS04755 49c36a4bc49ac09edf5be8e619d2df57 418 SUPERFAMILY SSF81301 9 151 8.5E-36 T 23-04-2016 RPE_RS04755 49c36a4bc49ac09edf5be8e619d2df57 418 PANTHER PTHR13734 18 238 4.4E-54 T 23-04-2016 RPE_RS13915 d5a84afe07ca6fd44c485e0da2dbe709 377 PANTHER PTHR21148:SF26 1 371 2.7E-153 T 23-04-2016 RPE_RS13915 d5a84afe07ca6fd44c485e0da2dbe709 377 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 7 366 3.7E-133 T 23-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 RPE_RS13915 d5a84afe07ca6fd44c485e0da2dbe709 377 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 5 363 53.259 T 23-04-2016 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 RPE_RS13915 d5a84afe07ca6fd44c485e0da2dbe709 377 Pfam PF01702 Queuine tRNA-ribosyltransferase 131 364 7.5E-77 T 23-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 RPE_RS13915 d5a84afe07ca6fd44c485e0da2dbe709 377 SUPERFAMILY SSF51713 6 364 3.53E-143 T 23-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 RPE_RS13915 d5a84afe07ca6fd44c485e0da2dbe709 377 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 7 366 4.3E-138 T 23-04-2016 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 RPE_RS13915 d5a84afe07ca6fd44c485e0da2dbe709 377 PANTHER PTHR21148 1 371 2.7E-153 T 23-04-2016 RPE_RS13915 d5a84afe07ca6fd44c485e0da2dbe709 377 Gene3D G3DSA:3.20.20.105 5 365 1.3E-146 T 23-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 RPE_RS22845 04a54013066516d41f052270fe6775fe 215 Pfam PF16357 Putative PepSY_TM-like 18 214 7.2E-83 T 23-04-2016 IPR032307 Putative PepSY TM-like protein RPE_RS22845 04a54013066516d41f052270fe6775fe 215 PANTHER PTHR40115 1 214 3.0E-47 T 23-04-2016 RPE_RS12755 33e4f7e5186b6ac2c4755a2c5bd636cd 175 PANTHER PTHR36302:SF1 11 165 6.7E-41 T 23-04-2016 RPE_RS12755 33e4f7e5186b6ac2c4755a2c5bd636cd 175 SUPERFAMILY SSF110087 9 150 1.44E-50 T 23-04-2016 IPR007410 DR1885-like metal-binding protein RPE_RS12755 33e4f7e5186b6ac2c4755a2c5bd636cd 175 Pfam PF04314 Protein of unknown function (DUF461) 33 142 3.8E-40 T 23-04-2016 IPR007410 DR1885-like metal-binding protein RPE_RS12755 33e4f7e5186b6ac2c4755a2c5bd636cd 175 PANTHER PTHR36302 11 165 6.7E-41 T 23-04-2016 RPE_RS13365 41a64eff7eacdd55e02d58876f604c7e 185 Pfam PF10741 Type II secretion system (T2SS), protein M subtype b 72 181 1.5E-18 T 23-04-2016 IPR007690 Type II secretion system, protein M GO:0006858 RPE_RS23165 39c3d0c06bdacf7568a13d4e4f8036b4 306 Pfam PF00005 ABC transporter 28 168 6.8E-26 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS23165 39c3d0c06bdacf7568a13d4e4f8036b4 306 PANTHER PTHR24220:SF361 7 278 8.5E-151 T 23-04-2016 RPE_RS23165 39c3d0c06bdacf7568a13d4e4f8036b4 306 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS23165 39c3d0c06bdacf7568a13d4e4f8036b4 306 Gene3D G3DSA:3.40.50.300 2 217 4.3E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS23165 39c3d0c06bdacf7568a13d4e4f8036b4 306 SMART SM00382 36 218 1.8E-13 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS23165 39c3d0c06bdacf7568a13d4e4f8036b4 306 PANTHER PTHR24220 7 278 8.5E-151 T 23-04-2016 RPE_RS23165 39c3d0c06bdacf7568a13d4e4f8036b4 306 SUPERFAMILY SSF52540 6 228 6.14E-64 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS17070 4f843a54dd59a98310f9d5b7742a0174 580 Pfam PF13400 Putative Flp pilus-assembly TadE/G-like 22 68 8.0E-13 T 23-04-2016 IPR028087 Putative Flp pilus-assembly TadG-like, N-terminal RPE_RS17070 4f843a54dd59a98310f9d5b7742a0174 580 SUPERFAMILY SSF53300 418 574 3.21E-12 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS17070 4f843a54dd59a98310f9d5b7742a0174 580 SUPERFAMILY SSF53300 150 207 3.21E-12 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS17070 4f843a54dd59a98310f9d5b7742a0174 580 Gene3D G3DSA:3.40.50.410 154 207 7.7E-9 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS17070 4f843a54dd59a98310f9d5b7742a0174 580 Gene3D G3DSA:3.40.50.410 418 573 7.7E-9 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS03600 40cf6057d242acdd8c4bb89d26877df7 114 Pfam PF06108 Protein of unknown function (DUF952) 7 96 1.4E-29 T 23-04-2016 IPR009297 Protein of unknown function DUF952 RPE_RS03600 40cf6057d242acdd8c4bb89d26877df7 114 PANTHER PTHR34129 2 113 5.5E-37 T 23-04-2016 RPE_RS03600 40cf6057d242acdd8c4bb89d26877df7 114 PANTHER PTHR34129:SF1 2 113 5.5E-37 T 23-04-2016 RPE_RS03600 40cf6057d242acdd8c4bb89d26877df7 114 SUPERFAMILY SSF56399 3 111 3.16E-38 T 23-04-2016 RPE_RS15925 e0f6a46d00a3c82cab2f2a715d686a73 187 PANTHER PTHR23409:SF18 15 182 8.8E-73 T 23-04-2016 RPE_RS15925 e0f6a46d00a3c82cab2f2a715d686a73 187 Pfam PF00268 Ribonucleotide reductase, small chain 13 154 1.0E-37 T 23-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 RPE_RS15925 e0f6a46d00a3c82cab2f2a715d686a73 187 Gene3D G3DSA:1.10.620.20 3 160 2.7E-53 T 23-04-2016 IPR012348 Ribonucleotide reductase-related GO:0016491|GO:0055114 Reactome: REACT_1698 RPE_RS15925 e0f6a46d00a3c82cab2f2a715d686a73 187 PANTHER PTHR23409 15 182 8.8E-73 T 23-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 RPE_RS15925 e0f6a46d00a3c82cab2f2a715d686a73 187 SUPERFAMILY SSF47240 17 184 3.75E-50 T 23-04-2016 IPR009078 Ferritin-like superfamily RPE_RS04510 a54b71228a63ecb54424843978c2e814 458 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 398 407 - T 23-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 RPE_RS04510 a54b71228a63ecb54424843978c2e814 458 PRINTS PR00465 E-class P450 group IV signature 45 68 4.0E-19 T 23-04-2016 IPR002403 Cytochrome P450, E-class, group IV GO:0004497|GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RPE_RS04510 a54b71228a63ecb54424843978c2e814 458 PRINTS PR00465 E-class P450 group IV signature 349 363 4.0E-19 T 23-04-2016 IPR002403 Cytochrome P450, E-class, group IV GO:0004497|GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RPE_RS04510 a54b71228a63ecb54424843978c2e814 458 PRINTS PR00465 E-class P450 group IV signature 389 405 4.0E-19 T 23-04-2016 IPR002403 Cytochrome P450, E-class, group IV GO:0004497|GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RPE_RS04510 a54b71228a63ecb54424843978c2e814 458 PRINTS PR00465 E-class P450 group IV signature 405 423 4.0E-19 T 23-04-2016 IPR002403 Cytochrome P450, E-class, group IV GO:0004497|GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RPE_RS04510 a54b71228a63ecb54424843978c2e814 458 PRINTS PR00465 E-class P450 group IV signature 316 332 4.0E-19 T 23-04-2016 IPR002403 Cytochrome P450, E-class, group IV GO:0004497|GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RPE_RS04510 a54b71228a63ecb54424843978c2e814 458 PRINTS PR00465 E-class P450 group IV signature 365 383 4.0E-19 T 23-04-2016 IPR002403 Cytochrome P450, E-class, group IV GO:0004497|GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RPE_RS04510 a54b71228a63ecb54424843978c2e814 458 Gene3D G3DSA:1.10.630.10 20 456 1.7E-105 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RPE_RS04510 a54b71228a63ecb54424843978c2e814 458 Pfam PF00067 Cytochrome P450 25 437 1.1E-71 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RPE_RS04510 a54b71228a63ecb54424843978c2e814 458 SUPERFAMILY SSF48264 19 455 1.57E-105 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RPE_RS04510 a54b71228a63ecb54424843978c2e814 458 PANTHER PTHR24286 17 454 1.6E-116 T 23-04-2016 RPE_RS04510 a54b71228a63ecb54424843978c2e814 458 PRINTS PR00385 P450 superfamily signature 396 405 1.7E-5 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RPE_RS04510 a54b71228a63ecb54424843978c2e814 458 PRINTS PR00385 P450 superfamily signature 321 332 1.7E-5 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RPE_RS04510 a54b71228a63ecb54424843978c2e814 458 PRINTS PR00385 P450 superfamily signature 405 416 1.7E-5 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RPE_RS04510 a54b71228a63ecb54424843978c2e814 458 PRINTS PR00385 P450 superfamily signature 267 284 1.7E-5 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RPE_RS18680 435df6ea9617c0f6026ca849a9a5d08f 178 PANTHER PTHR21262 1 164 4.6E-60 T 23-04-2016 RPE_RS18680 435df6ea9617c0f6026ca849a9a5d08f 178 SUPERFAMILY SSF109604 3 168 1.7E-40 T 23-04-2016 RPE_RS18680 435df6ea9617c0f6026ca849a9a5d08f 178 Pfam PF13328 HD domain 10 137 6.8E-21 T 23-04-2016 IPR003607 HD/PDEase domain RPE_RS18680 435df6ea9617c0f6026ca849a9a5d08f 178 SMART SM00471 27 135 0.0011 T 23-04-2016 IPR003607 HD/PDEase domain RPE_RS10275 5d0c7e8383b97418642a77823d4c46a3 269 PANTHER PTHR30043:SF1 19 268 3.5E-61 T 23-04-2016 RPE_RS10275 5d0c7e8383b97418642a77823d4c46a3 269 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 98 264 2.7E-10 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS10275 5d0c7e8383b97418642a77823d4c46a3 269 PANTHER PTHR30043 19 268 3.5E-61 T 23-04-2016 RPE_RS10275 5d0c7e8383b97418642a77823d4c46a3 269 SUPERFAMILY SSF161098 72 258 8.11E-32 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS10275 5d0c7e8383b97418642a77823d4c46a3 269 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 23 268 9.0E-79 T 23-04-2016 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 RPE_RS10275 5d0c7e8383b97418642a77823d4c46a3 269 Gene3D G3DSA:1.10.3720.10 72 268 2.6E-30 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS19360 09418e4f6fe7f67af0af5b4120fd208c 162 PANTHER PTHR34584 4 161 9.9E-28 T 23-04-2016 RPE_RS19360 09418e4f6fe7f67af0af5b4120fd208c 162 Pfam PF01899 Na+/H+ ion antiporter subunit 12 160 3.0E-40 T 23-04-2016 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 RPE_RS19360 09418e4f6fe7f67af0af5b4120fd208c 162 PANTHER PTHR34584:SF1 4 161 9.9E-28 T 23-04-2016 RPE_RS19360 09418e4f6fe7f67af0af5b4120fd208c 162 PIRSF PIRSF019239 1 162 1.8E-38 T 23-04-2016 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 RPE_RS19325 78f03ef51c4fdb22a7fb53ad37781bb7 164 PIRSF PIRSF004638 1 138 6.9E-22 T 23-04-2016 IPR005265 Uncharacterised protein family UPF0093 RPE_RS19325 78f03ef51c4fdb22a7fb53ad37781bb7 164 Pfam PF03653 Uncharacterised protein family (UPF0093) 2 133 1.1E-16 T 23-04-2016 IPR005265 Uncharacterised protein family UPF0093 RPE_RS02765 e6960edb380f3d72c76fba78c404f146 303 PANTHER PTHR22911:SF66 12 291 4.6E-88 T 23-04-2016 RPE_RS02765 e6960edb380f3d72c76fba78c404f146 303 SUPERFAMILY SSF103481 55 153 1.27E-11 T 23-04-2016 RPE_RS02765 e6960edb380f3d72c76fba78c404f146 303 PANTHER PTHR22911 12 291 4.6E-88 T 23-04-2016 RPE_RS02765 e6960edb380f3d72c76fba78c404f146 303 Pfam PF00892 EamA-like transporter family 159 288 1.2E-10 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RPE_RS02765 e6960edb380f3d72c76fba78c404f146 303 Pfam PF00892 EamA-like transporter family 19 149 1.7E-10 T 23-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RPE_RS02765 e6960edb380f3d72c76fba78c404f146 303 SUPERFAMILY SSF103481 194 293 1.07E-15 T 23-04-2016 RPE_RS07025 02e9f7296e884d3c6400adabd896bdcb 544 PANTHER PTHR21631 181 279 2.4E-77 T 23-04-2016 RPE_RS07025 02e9f7296e884d3c6400adabd896bdcb 544 PANTHER PTHR21631 330 422 2.4E-77 T 23-04-2016 RPE_RS07025 02e9f7296e884d3c6400adabd896bdcb 544 PANTHER PTHR21631 459 543 2.4E-77 T 23-04-2016 RPE_RS07025 02e9f7296e884d3c6400adabd896bdcb 544 PANTHER PTHR21631 110 157 2.4E-77 T 23-04-2016 RPE_RS07025 02e9f7296e884d3c6400adabd896bdcb 544 Pfam PF00463 Isocitrate lyase family 335 402 1.6E-10 T 23-04-2016 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969|UniPathway: UPA00703 RPE_RS07025 02e9f7296e884d3c6400adabd896bdcb 544 Pfam PF00463 Isocitrate lyase family 442 543 3.0E-12 T 23-04-2016 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969|UniPathway: UPA00703 RPE_RS07025 02e9f7296e884d3c6400adabd896bdcb 544 Pfam PF00463 Isocitrate lyase family 111 283 4.8E-19 T 23-04-2016 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969|UniPathway: UPA00703 RPE_RS07025 02e9f7296e884d3c6400adabd896bdcb 544 Gene3D G3DSA:3.20.20.60 316 405 1.7E-135 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RPE_RS07025 02e9f7296e884d3c6400adabd896bdcb 544 Gene3D G3DSA:3.20.20.60 442 526 1.7E-135 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RPE_RS07025 02e9f7296e884d3c6400adabd896bdcb 544 Gene3D G3DSA:3.20.20.60 18 283 1.7E-135 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RPE_RS07025 02e9f7296e884d3c6400adabd896bdcb 544 SUPERFAMILY SSF51621 442 527 1.44E-126 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RPE_RS07025 02e9f7296e884d3c6400adabd896bdcb 544 SUPERFAMILY SSF51621 14 405 1.44E-126 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RPE_RS06260 fea48ad55408d5126d22b67f07e53455 290 Pfam PF04809 HupH hydrogenase expression protein, C-terminal conserved region 61 161 3.2E-12 T 23-04-2016 IPR006894 HupH hydrogenase expression protein, C-terminal RPE_RS06260 fea48ad55408d5126d22b67f07e53455 290 Pfam PF04809 HupH hydrogenase expression protein, C-terminal conserved region 172 287 3.0E-41 T 23-04-2016 IPR006894 HupH hydrogenase expression protein, C-terminal RPE_RS06260 fea48ad55408d5126d22b67f07e53455 290 ProDom PD005668 HYDROGENASE HUPH HYDROGENASE-1 EXPRESSION/FORMATION OPERON PROTEIN C-TERMINAL EXPRESSION HYAF HOXQ 60 153 7.0E-11 T 23-04-2016 IPR006894 HupH hydrogenase expression protein, C-terminal RPE_RS06260 fea48ad55408d5126d22b67f07e53455 290 ProDom PD005668 HYDROGENASE HUPH HYDROGENASE-1 EXPRESSION/FORMATION OPERON PROTEIN C-TERMINAL EXPRESSION HYAF HOXQ 172 287 1.0E-62 T 23-04-2016 IPR006894 HupH hydrogenase expression protein, C-terminal RPE_RS15440 d09f76634367b6efd091c25b1e7f763f 154 Pfam PF13501 Sulfur oxidation protein SoxY 43 152 1.3E-38 T 23-04-2016 IPR032711 Ig-like SoxY domain RPE_RS15440 d09f76634367b6efd091c25b1e7f763f 154 TIGRFAM TIGR04488 SoxY_true_GGCGG: thiosulfate oxidation carrier protein SoxY 9 154 1.7E-46 T 23-04-2016 IPR016568 Sulphur oxidation, SoxY RPE_RS15440 d09f76634367b6efd091c25b1e7f763f 154 PIRSF PIRSF010312 2 154 4.3E-58 T 23-04-2016 IPR016568 Sulphur oxidation, SoxY RPE_RS01735 597f2bebb47af8ad584e825c203b5ef5 192 Pfam PF03358 NADPH-dependent FMN reductase 5 158 2.4E-34 T 23-04-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 RPE_RS01735 597f2bebb47af8ad584e825c203b5ef5 192 SUPERFAMILY SSF52218 5 185 1.76E-40 T 23-04-2016 IPR029039 Flavoprotein-like domain RPE_RS01735 597f2bebb47af8ad584e825c203b5ef5 192 PANTHER PTHR30543 1 192 7.1E-54 T 23-04-2016 RPE_RS01735 597f2bebb47af8ad584e825c203b5ef5 192 PANTHER PTHR30543:SF6 1 192 7.1E-54 T 23-04-2016 RPE_RS01735 597f2bebb47af8ad584e825c203b5ef5 192 Gene3D G3DSA:3.40.50.360 1 192 8.3E-51 T 23-04-2016 IPR029039 Flavoprotein-like domain RPE_RS22105 298916d6b4cc26ab02b9ba6ef3e69dc0 402 SMART SM00729 111 336 8.3E-8 T 23-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RPE_RS22105 298916d6b4cc26ab02b9ba6ef3e69dc0 402 Gene3D G3DSA:3.20.20.70 114 303 2.5E-8 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS22105 298916d6b4cc26ab02b9ba6ef3e69dc0 402 Pfam PF04055 Radical SAM superfamily 115 293 3.8E-15 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RPE_RS22105 298916d6b4cc26ab02b9ba6ef3e69dc0 402 PANTHER PTHR11228:SF26 58 373 2.5E-101 T 23-04-2016 RPE_RS22105 298916d6b4cc26ab02b9ba6ef3e69dc0 402 PANTHER PTHR11228 58 373 2.5E-101 T 23-04-2016 RPE_RS22105 298916d6b4cc26ab02b9ba6ef3e69dc0 402 SUPERFAMILY SSF102114 96 310 5.62E-13 T 23-04-2016 RPE_RS06270 e351534c7781bcc07876b3f04ee026ec 178 Pfam PF11939 Protein of unknown function (DUF3457) 18 171 8.4E-46 T 23-04-2016 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE RPE_RS06270 e351534c7781bcc07876b3f04ee026ec 178 TIGRFAM TIGR03993 hydrog_HybE: [NiFe] hydrogenase assembly chaperone, HybE family 20 170 6.2E-49 T 23-04-2016 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE RPE_RS06270 e351534c7781bcc07876b3f04ee026ec 178 ProDom PD008308 HUPJ HYDROGENASE EXPRESSION/FORMATION HYDROGENASE-2 HYBE COMPONENT OPERON ELECTRON METAL-BINDING IRON 28 119 2.0E-36 T 23-04-2016 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE RPE_RS23220 f07a06564bb0fe1c9efc1a2fbadd2917 272 SUPERFAMILY SSF53927 5 263 6.62E-80 T 23-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 RPE_RS23220 f07a06564bb0fe1c9efc1a2fbadd2917 272 Gene3D G3DSA:3.10.20.10 28 113 2.0E-28 T 23-04-2016 RPE_RS23220 f07a06564bb0fe1c9efc1a2fbadd2917 272 PANTHER PTHR30592 12 272 2.6E-99 T 23-04-2016 RPE_RS23220 f07a06564bb0fe1c9efc1a2fbadd2917 272 PIRSF PIRSF015626 3 267 1.3E-77 T 23-04-2016 IPR003786 Protein FdhD GO:0016783 RPE_RS23220 f07a06564bb0fe1c9efc1a2fbadd2917 272 Hamap MF_00187 Protein FdhD [fdhD]. 3 264 31.574 T 23-04-2016 IPR003786 Protein FdhD GO:0016783 RPE_RS23220 f07a06564bb0fe1c9efc1a2fbadd2917 272 Pfam PF02634 FdhD/NarQ family 27 263 5.0E-77 T 23-04-2016 IPR003786 Protein FdhD GO:0016783 RPE_RS23220 f07a06564bb0fe1c9efc1a2fbadd2917 272 PANTHER PTHR30592:SF1 12 272 2.6E-99 T 23-04-2016 RPE_RS23220 f07a06564bb0fe1c9efc1a2fbadd2917 272 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 25 263 9.2E-60 T 23-04-2016 IPR003786 Protein FdhD GO:0016783 RPE_RS23220 f07a06564bb0fe1c9efc1a2fbadd2917 272 Gene3D G3DSA:3.40.140.10 127 265 1.5E-48 T 23-04-2016 RPE_RS20640 907143976a24b1d7d8db199b8fc50b35 320 Gene3D G3DSA:3.40.50.720 210 265 8.5E-4 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS20640 907143976a24b1d7d8db199b8fc50b35 320 Gene3D G3DSA:3.40.50.720 50 92 8.5E-4 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS20640 907143976a24b1d7d8db199b8fc50b35 320 Pfam PF02401 LytB protein 9 285 4.9E-83 T 23-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 RPE_RS20640 907143976a24b1d7d8db199b8fc50b35 320 PANTHER PTHR30426 7 320 6.0E-142 T 23-04-2016 RPE_RS20640 907143976a24b1d7d8db199b8fc50b35 320 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 8 289 3.6E-94 T 23-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 RPE_RS20640 907143976a24b1d7d8db199b8fc50b35 320 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 7 292 35.244 T 23-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 RPE_RS12490 fdcc8987cd62465346159424f9c6eb9b 348 Pfam PF01734 Patatin-like phospholipase 14 203 1.6E-25 T 23-04-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 RPE_RS12490 fdcc8987cd62465346159424f9c6eb9b 348 PANTHER PTHR32176 4 207 8.4E-30 T 23-04-2016 RPE_RS12490 fdcc8987cd62465346159424f9c6eb9b 348 SUPERFAMILY SSF52151 10 316 1.7E-47 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RPE_RS12490 fdcc8987cd62465346159424f9c6eb9b 348 Gene3D G3DSA:3.40.1090.10 3 304 3.6E-68 T 23-04-2016 RPE_RS24720 b6ace46adb2ffb2318e15de0668f3734 148 SUPERFAMILY SSF54523 10 114 3.53E-8 T 23-04-2016 RPE_RS15715 9371cee1525a9428f52aba384df8b397 332 Gene3D G3DSA:3.40.50.410 82 198 1.6E-11 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS15715 9371cee1525a9428f52aba384df8b397 332 SUPERFAMILY SSF53300 80 239 6.82E-20 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS15715 9371cee1525a9428f52aba384df8b397 332 SMART SM00327 81 259 4.1E-12 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS15715 9371cee1525a9428f52aba384df8b397 332 Pfam PF13519 von Willebrand factor type A domain 84 197 1.4E-12 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS02150 7712882bf9a9ada011094c1ea5140b6f 217 Gene3D G3DSA:2.60.450.10 40 193 9.5E-41 T 23-04-2016 RPE_RS02150 7712882bf9a9ada011094c1ea5140b6f 217 Pfam PF03968 OstA-like protein 48 181 6.7E-24 T 23-04-2016 IPR005653 Organic solvent tolerance-like, N-terminal RPE_RS02150 7712882bf9a9ada011094c1ea5140b6f 217 PANTHER PTHR36504 14 91 5.5E-37 T 23-04-2016 RPE_RS02150 7712882bf9a9ada011094c1ea5140b6f 217 PANTHER PTHR36504 120 217 5.5E-37 T 23-04-2016 RPE_RS16790 92a278774ce2f3cbd90d38db3dcfe835 194 Pfam PF07298 NnrU protein 5 190 2.0E-55 T 23-04-2016 IPR009915 NnrU domain RPE_RS04810 e81542b023c542c266106ea3e9d2ee41 483 PANTHER PTHR22773:SF56 1 482 2.2E-174 T 23-04-2016 RPE_RS04810 e81542b023c542c266106ea3e9d2ee41 483 PANTHER PTHR22773 1 482 2.2E-174 T 23-04-2016 RPE_RS04810 e81542b023c542c266106ea3e9d2ee41 483 Pfam PF00361 Proton-conducting membrane transporter 124 422 1.5E-53 T 23-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RPE_RS04810 e81542b023c542c266106ea3e9d2ee41 483 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 239 263 5.4E-10 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RPE_RS04810 e81542b023c542c266106ea3e9d2ee41 483 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 328 347 5.4E-10 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RPE_RS04810 e81542b023c542c266106ea3e9d2ee41 483 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 380 406 5.4E-10 T 23-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RPE_RS16755 bceb302840d8d7578df65f2206a3af29 133 PANTHER PTHR36919:SF2 15 131 3.5E-26 T 23-04-2016 RPE_RS16755 bceb302840d8d7578df65f2206a3af29 133 Pfam PF09917 Uncharacterized protein conserved in bacteria (DUF2147) 35 131 9.1E-20 T 23-04-2016 IPR019223 Domain of unknown function DUF2147 RPE_RS16755 bceb302840d8d7578df65f2206a3af29 133 PANTHER PTHR36919 15 131 3.5E-26 T 23-04-2016 RPE_RS14790 09d310d523506a414b6b9ebb5e1d886a 202 Gene3D G3DSA:3.40.50.150 15 178 8.3E-27 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS14790 09d310d523506a414b6b9ebb5e1d886a 202 Pfam PF13489 Methyltransferase domain 29 152 3.4E-12 T 23-04-2016 RPE_RS14790 09d310d523506a414b6b9ebb5e1d886a 202 PANTHER PTHR10108 11 138 8.0E-14 T 23-04-2016 RPE_RS14790 09d310d523506a414b6b9ebb5e1d886a 202 SUPERFAMILY SSF53335 12 169 2.17E-29 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS07245 a91f2224c63dd5f15208eac6ccf33d24 97 Pfam PF14110 Domain of unknown function (DUF4282) 8 91 4.2E-22 T 23-04-2016 IPR025557 Protein of unknown function DUF4282 RPE_RS21905 d199c0853cc94916d4d1c30bc5f393aa 391 Pfam PF13191 AAA ATPase domain 1 158 4.9E-9 T 23-04-2016 RPE_RS21905 d199c0853cc94916d4d1c30bc5f393aa 391 SUPERFAMILY SSF52540 3 41 9.31E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS21905 d199c0853cc94916d4d1c30bc5f393aa 391 SUPERFAMILY SSF52540 107 274 9.31E-15 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS21905 d199c0853cc94916d4d1c30bc5f393aa 391 Gene3D G3DSA:3.40.50.300 3 214 1.2E-7 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS22210 3f365ada93fe264a8263cff52bf321a7 215 Gene3D G3DSA:1.20.120.580 145 185 8.6E-4 T 23-04-2016 RPE_RS03925 62afce52c3ee38cf881183f2b32749d8 134 SUPERFAMILY SSF101116 10 126 5.23E-26 T 23-04-2016 IPR003713 Flagellar protein FliS GO:0044780 RPE_RS03925 62afce52c3ee38cf881183f2b32749d8 134 Pfam PF02561 Flagellar protein FliS 11 123 2.9E-24 T 23-04-2016 IPR003713 Flagellar protein FliS GO:0044780 RPE_RS03925 62afce52c3ee38cf881183f2b32749d8 134 Gene3D G3DSA:1.20.120.340 9 126 9.5E-25 T 23-04-2016 IPR003713 Flagellar protein FliS GO:0044780 RPE_RS03925 62afce52c3ee38cf881183f2b32749d8 134 PANTHER PTHR34773 1 125 9.8E-24 T 23-04-2016 RPE_RS10860 2f31b69796d9fad0444eb463af805710 573 SUPERFAMILY SSF52540 213 553 2.16E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10860 2f31b69796d9fad0444eb463af805710 573 Gene3D G3DSA:3.40.50.300 212 403 1.2E-21 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10860 2f31b69796d9fad0444eb463af805710 573 Pfam PF08378 Nuclease-related domain 17 115 1.6E-8 T 23-04-2016 IPR011528 Nuclease-related domain, NERD RPE_RS10860 2f31b69796d9fad0444eb463af805710 573 Gene3D G3DSA:3.40.50.300 404 553 2.3E-17 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10860 2f31b69796d9fad0444eb463af805710 573 Pfam PF13245 Part of AAA domain 230 297 3.0E-6 T 23-04-2016 RPE_RS19250 93745a56d3591b31890a67c097b29674 250 SMART SM00382 44 227 2.3E-11 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS19250 93745a56d3591b31890a67c097b29674 250 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS19250 93745a56d3591b31890a67c097b29674 250 Pfam PF00005 ABC transporter 36 178 2.0E-27 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS19250 93745a56d3591b31890a67c097b29674 250 PANTHER PTHR24220 21 248 3.5E-86 T 23-04-2016 RPE_RS19250 93745a56d3591b31890a67c097b29674 250 PANTHER PTHR24220:SF568 21 248 3.5E-86 T 23-04-2016 RPE_RS19250 93745a56d3591b31890a67c097b29674 250 Gene3D G3DSA:3.40.50.300 17 245 8.8E-55 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS19250 93745a56d3591b31890a67c097b29674 250 SUPERFAMILY SSF52540 18 245 3.66E-53 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS13450 09bfbee67be55d9c877e6aae40989286 344 PIRSF PIRSF500210 1 328 1.4E-107 T 23-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 RPE_RS13450 09bfbee67be55d9c877e6aae40989286 344 Gene3D G3DSA:3.40.190.80 188 324 3.8E-48 T 23-04-2016 RPE_RS13450 09bfbee67be55d9c877e6aae40989286 344 SUPERFAMILY SSF56655 3 320 5.22E-92 T 23-04-2016 RPE_RS13450 09bfbee67be55d9c877e6aae40989286 344 PANTHER PTHR11556 28 320 6.5E-103 T 23-04-2016 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0042132|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: REACT_474|UniPathway: UPA00138 RPE_RS13450 09bfbee67be55d9c877e6aae40989286 344 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 5 325 40.036 T 23-04-2016 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0042132|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: REACT_474|UniPathway: UPA00138 RPE_RS13450 09bfbee67be55d9c877e6aae40989286 344 ProSitePatterns PS00124 Fructose-1-6-bisphosphatase active site. 265 277 - T 23-04-2016 IPR020548 Fructose-1,6-bisphosphatase, active site GO:0005975|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: REACT_474 RPE_RS13450 09bfbee67be55d9c877e6aae40989286 344 PIRSF PIRSF000904 1 329 4.5E-103 T 23-04-2016 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0042132|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: REACT_474|UniPathway: UPA00138 RPE_RS13450 09bfbee67be55d9c877e6aae40989286 344 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 299 324 1.8E-37 T 23-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 RPE_RS13450 09bfbee67be55d9c877e6aae40989286 344 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 197 224 1.8E-37 T 23-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 RPE_RS13450 09bfbee67be55d9c877e6aae40989286 344 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 29 56 1.8E-37 T 23-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 RPE_RS13450 09bfbee67be55d9c877e6aae40989286 344 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 171 194 1.8E-37 T 23-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 RPE_RS13450 09bfbee67be55d9c877e6aae40989286 344 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 67 93 1.8E-37 T 23-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 RPE_RS13450 09bfbee67be55d9c877e6aae40989286 344 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 140 163 1.8E-37 T 23-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 RPE_RS13450 09bfbee67be55d9c877e6aae40989286 344 Gene3D G3DSA:3.30.540.10 6 179 4.3E-47 T 23-04-2016 RPE_RS13450 09bfbee67be55d9c877e6aae40989286 344 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 6 182 1.2E-47 T 23-04-2016 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 RPE_RS06860 67c0287e73166261acbbe3734cde9e37 141 PANTHER PTHR31262 6 117 6.0E-62 T 23-04-2016 RPE_RS06860 67c0287e73166261acbbe3734cde9e37 141 SMART SM00961 4 103 7.3E-53 T 23-04-2016 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RPE_RS06860 67c0287e73166261acbbe3734cde9e37 141 SUPERFAMILY SSF55239 1 138 8.64E-55 T 23-04-2016 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RPE_RS06860 67c0287e73166261acbbe3734cde9e37 141 Gene3D G3DSA:3.30.190.10 1 137 2.0E-56 T 23-04-2016 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RPE_RS06860 67c0287e73166261acbbe3734cde9e37 141 PANTHER PTHR31262:SF6 6 117 6.0E-62 T 23-04-2016 RPE_RS06860 67c0287e73166261acbbe3734cde9e37 141 Pfam PF00101 Ribulose bisphosphate carboxylase, small chain 5 103 5.6E-39 T 23-04-2016 IPR000894 Ribulose bisphosphate carboxylase small chain, domain KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RPE_RS11780 5893d65ac1490df2549642bc74e699c3 159 SUPERFAMILY SSF82649 1 142 4.71E-42 T 23-04-2016 RPE_RS11780 5893d65ac1490df2549642bc74e699c3 159 Gene3D G3DSA:3.90.1010.10 5 144 2.4E-18 T 23-04-2016 RPE_RS11780 5893d65ac1490df2549642bc74e699c3 159 Pfam PF01592 NifU-like N terminal domain 6 122 2.4E-8 T 23-04-2016 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 RPE_RS12540 4cd17ade6d7b52e09bd114bf5d0af46d 1251 SUPERFAMILY SSF75625 296 393 5.89E-11 T 23-04-2016 IPR029072 YebC-like RPE_RS12540 4cd17ade6d7b52e09bd114bf5d0af46d 1251 SUPERFAMILY SSF51998 841 925 1.13E-121 T 23-04-2016 RPE_RS12540 4cd17ade6d7b52e09bd114bf5d0af46d 1251 SUPERFAMILY SSF51998 197 302 1.13E-121 T 23-04-2016 RPE_RS12540 4cd17ade6d7b52e09bd114bf5d0af46d 1251 SUPERFAMILY SSF51998 394 716 1.13E-121 T 23-04-2016 RPE_RS12540 4cd17ade6d7b52e09bd114bf5d0af46d 1251 TIGRFAM TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 139 755 5.2E-138 T 23-04-2016 IPR013344 Ribonucleotide reductase, adenosylcobalamin-dependent GO:0000166|GO:0004748|GO:0031419|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RPE_RS12540 4cd17ade6d7b52e09bd114bf5d0af46d 1251 PANTHER PTHR11573 836 938 0.0 T 23-04-2016 RPE_RS12540 4cd17ade6d7b52e09bd114bf5d0af46d 1251 PANTHER PTHR11573 1 160 0.0 T 23-04-2016 RPE_RS12540 4cd17ade6d7b52e09bd114bf5d0af46d 1251 PANTHER PTHR11573 642 747 0.0 T 23-04-2016 RPE_RS12540 4cd17ade6d7b52e09bd114bf5d0af46d 1251 PANTHER PTHR11573 961 1123 0.0 T 23-04-2016 RPE_RS12540 4cd17ade6d7b52e09bd114bf5d0af46d 1251 PANTHER PTHR11573 191 308 0.0 T 23-04-2016 RPE_RS12540 4cd17ade6d7b52e09bd114bf5d0af46d 1251 PANTHER PTHR11573 1204 1251 0.0 T 23-04-2016 RPE_RS12540 4cd17ade6d7b52e09bd114bf5d0af46d 1251 PANTHER PTHR11573 399 617 0.0 T 23-04-2016 RPE_RS12540 4cd17ade6d7b52e09bd114bf5d0af46d 1251 Gene3D G3DSA:3.20.70.20 664 710 9.4E-93 T 23-04-2016 RPE_RS12540 4cd17ade6d7b52e09bd114bf5d0af46d 1251 Gene3D G3DSA:3.20.70.20 100 302 9.4E-93 T 23-04-2016 RPE_RS12540 4cd17ade6d7b52e09bd114bf5d0af46d 1251 Gene3D G3DSA:3.20.70.20 43 65 9.4E-93 T 23-04-2016 RPE_RS12540 4cd17ade6d7b52e09bd114bf5d0af46d 1251 Gene3D G3DSA:3.20.70.20 390 591 9.4E-93 T 23-04-2016 RPE_RS12540 4cd17ade6d7b52e09bd114bf5d0af46d 1251 Gene3D G3DSA:3.20.70.20 872 918 9.4E-93 T 23-04-2016 RPE_RS12540 4cd17ade6d7b52e09bd114bf5d0af46d 1251 Pfam PF08471 Class II vitamin B12-dependent ribonucleotide reductase 31 147 1.3E-39 T 23-04-2016 IPR013678 Ribonucleotide reductase class II vitamin B12-dependent, N-terminal domain GO:0004748|GO:0050897|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RPE_RS12540 4cd17ade6d7b52e09bd114bf5d0af46d 1251 PRINTS PR01183 Ribonucleotide reductase large chain signature 275 294 3.4E-5 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RPE_RS12540 4cd17ade6d7b52e09bd114bf5d0af46d 1251 PRINTS PR01183 Ribonucleotide reductase large chain signature 543 565 3.4E-5 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RPE_RS12540 4cd17ade6d7b52e09bd114bf5d0af46d 1251 PANTHER PTHR11573:SF18 836 938 0.0 T 23-04-2016 RPE_RS12540 4cd17ade6d7b52e09bd114bf5d0af46d 1251 PANTHER PTHR11573:SF18 1 160 0.0 T 23-04-2016 RPE_RS12540 4cd17ade6d7b52e09bd114bf5d0af46d 1251 PANTHER PTHR11573:SF18 642 747 0.0 T 23-04-2016 RPE_RS12540 4cd17ade6d7b52e09bd114bf5d0af46d 1251 PANTHER PTHR11573:SF18 961 1123 0.0 T 23-04-2016 RPE_RS12540 4cd17ade6d7b52e09bd114bf5d0af46d 1251 PANTHER PTHR11573:SF18 191 308 0.0 T 23-04-2016 RPE_RS12540 4cd17ade6d7b52e09bd114bf5d0af46d 1251 PANTHER PTHR11573:SF18 1204 1251 0.0 T 23-04-2016 RPE_RS12540 4cd17ade6d7b52e09bd114bf5d0af46d 1251 PANTHER PTHR11573:SF18 399 617 0.0 T 23-04-2016 RPE_RS12540 4cd17ade6d7b52e09bd114bf5d0af46d 1251 Pfam PF02867 Ribonucleotide reductase, barrel domain 198 750 3.7E-103 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RPE_RS12540 4cd17ade6d7b52e09bd114bf5d0af46d 1251 Pfam PF02867 Ribonucleotide reductase, barrel domain 813 913 8.6E-18 T 23-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RPE_RS07350 9750b63ea08e940a1e6e99d3bcf9a8fa 149 Gene3D G3DSA:1.20.120.10 22 148 3.4E-35 T 23-04-2016 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 RPE_RS07350 9750b63ea08e940a1e6e99d3bcf9a8fa 149 SUPERFAMILY SSF47175 22 147 2.21E-31 T 23-04-2016 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 RPE_RS07350 9750b63ea08e940a1e6e99d3bcf9a8fa 149 Pfam PF01322 Cytochrome C' 23 145 5.9E-28 T 23-04-2016 IPR002321 Cytochrome c, class II GO:0005506|GO:0009055|GO:0020037 RPE_RS07350 9750b63ea08e940a1e6e99d3bcf9a8fa 149 PIRSF PIRSF000027 1 147 5.8E-32 T 23-04-2016 IPR012127 Cytochrome c prime GO:0005506|GO:0009055|GO:0020037|GO:0042597 RPE_RS01660 78c2a138b9a546d6efc468e424e6e90c 131 PRINTS PR00061 Ribosomal protein L19 signature 92 117 2.8E-34 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS01660 78c2a138b9a546d6efc468e424e6e90c 131 PRINTS PR00061 Ribosomal protein L19 signature 38 67 2.8E-34 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS01660 78c2a138b9a546d6efc468e424e6e90c 131 PRINTS PR00061 Ribosomal protein L19 signature 8 37 2.8E-34 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS01660 78c2a138b9a546d6efc468e424e6e90c 131 PIRSF PIRSF002191 1 131 2.0E-54 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS01660 78c2a138b9a546d6efc468e424e6e90c 131 PANTHER PTHR15680 2 121 1.6E-55 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS01660 78c2a138b9a546d6efc468e424e6e90c 131 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 1 117 1.3E-45 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS01660 78c2a138b9a546d6efc468e424e6e90c 131 SUPERFAMILY SSF50104 1 120 3.81E-45 T 23-04-2016 IPR008991 Translation protein SH3-like domain RPE_RS01660 78c2a138b9a546d6efc468e424e6e90c 131 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 1 118 29.902 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS01660 78c2a138b9a546d6efc468e424e6e90c 131 ProSitePatterns PS01015 Ribosomal protein L19 signature. 90 105 - T 23-04-2016 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS01660 78c2a138b9a546d6efc468e424e6e90c 131 Pfam PF01245 Ribosomal protein L19 2 117 1.5E-47 T 23-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS12020 83c8a465e41008fe3f1019c6aec2818d 168 SUPERFAMILY SSF53597 7 147 1.19E-21 T 23-04-2016 IPR024072 Dihydrofolate reductase-like domain RPE_RS12020 83c8a465e41008fe3f1019c6aec2818d 168 Pfam PF00186 Dihydrofolate reductase 14 118 1.0E-6 T 23-04-2016 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0006545|GO:0009165|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RPE_RS12020 83c8a465e41008fe3f1019c6aec2818d 168 Gene3D G3DSA:3.40.430.10 12 144 7.9E-14 T 23-04-2016 IPR024072 Dihydrofolate reductase-like domain RPE_RS09575 4995f965829f4321a33b2a21673f24eb 252 Pfam PF00872 Transposase, Mutator family 3 251 8.2E-86 T 23-04-2016 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 RPE_RS09575 4995f965829f4321a33b2a21673f24eb 252 PANTHER PTHR33217:SF2 19 249 1.4E-97 T 23-04-2016 RPE_RS09575 4995f965829f4321a33b2a21673f24eb 252 PANTHER PTHR33217 19 249 1.4E-97 T 23-04-2016 RPE_RS16695 8cd547570f00ee8b6c570622ba038d91 97 Gene3D G3DSA:1.20.1600.10 32 66 3.0E-6 T 23-04-2016 RPE_RS16695 8cd547570f00ee8b6c570622ba038d91 97 SUPERFAMILY SSF56954 32 76 9.29E-7 T 23-04-2016 RPE_RS18730 20be8d4f35ad9b322e1aa739f58bf9e0 94 Gene3D G3DSA:2.40.50.140 1 72 1.9E-32 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS18730 20be8d4f35ad9b322e1aa739f58bf9e0 94 PANTHER PTHR33370 1 83 8.5E-40 T 23-04-2016 RPE_RS18730 20be8d4f35ad9b322e1aa739f58bf9e0 94 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 3.9E-29 T 23-04-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 RPE_RS18730 20be8d4f35ad9b322e1aa739f58bf9e0 94 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 24.816 T 23-04-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 RPE_RS18730 20be8d4f35ad9b322e1aa739f58bf9e0 94 SUPERFAMILY SSF50249 1 71 6.28E-23 T 23-04-2016 IPR012340 Nucleic acid-binding, OB-fold RPE_RS18730 20be8d4f35ad9b322e1aa739f58bf9e0 94 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 3.1E-21 T 23-04-2016 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 RPE_RS05150 a2d7ea75f9a2c1d5fdcbdbf638f10ef0 408 Pfam PF12616 Protein of unknown function (DUF3775) 315 380 1.6E-5 T 23-04-2016 IPR022254 Protein of unknown function DUF3775 RPE_RS20315 f1cb306d2a18e842cc216a9578d18e72 133 SUPERFAMILY SSF88723 1 131 8.13E-18 T 23-04-2016 IPR029060 PIN domain-like RPE_RS20315 f1cb306d2a18e842cc216a9578d18e72 133 Gene3D G3DSA:3.40.50.1010 1 119 3.8E-6 T 23-04-2016 IPR029060 PIN domain-like RPE_RS20315 f1cb306d2a18e842cc216a9578d18e72 133 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 2 133 9.491 T 23-04-2016 IPR022907 VapC family GO:0004540 RPE_RS20315 f1cb306d2a18e842cc216a9578d18e72 133 Pfam PF01850 PIN domain 2 126 2.3E-11 T 23-04-2016 IPR002716 PIN domain RPE_RS19405 422411e549a3ebc8330ec484cff2fc84 246 TIGRFAM TIGR02940 anfO_nitrog: Fe-only nitrogenase accessory protein AnfO 2 222 7.5E-59 T 23-04-2016 IPR014287 Nitrogenase iron-iron, accessory protein AnfO RPE_RS19405 422411e549a3ebc8330ec484cff2fc84 246 Pfam PF09582 Iron only nitrogenase protein AnfO (AnfO_nitrog) 2 220 9.7E-51 T 23-04-2016 IPR014287 Nitrogenase iron-iron, accessory protein AnfO RPE_RS08375 d20858011a89d65e3ffbbde3a806136f 290 Gene3D G3DSA:3.40.50.150 88 255 5.5E-33 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS08375 d20858011a89d65e3ffbbde3a806136f 290 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 93 233 9.8E-24 T 23-04-2016 IPR006342 Methyltransferase FkbM KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- RPE_RS08375 d20858011a89d65e3ffbbde3a806136f 290 PANTHER PTHR34203:SF2 74 229 3.3E-19 T 23-04-2016 RPE_RS08375 d20858011a89d65e3ffbbde3a806136f 290 PANTHER PTHR34203 74 229 3.3E-19 T 23-04-2016 RPE_RS08375 d20858011a89d65e3ffbbde3a806136f 290 SUPERFAMILY SSF53335 41 253 1.52E-40 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS08375 d20858011a89d65e3ffbbde3a806136f 290 Pfam PF05050 Methyltransferase FkbM domain 96 240 1.1E-14 T 23-04-2016 IPR006342 Methyltransferase FkbM KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- RPE_RS14700 28ce86644c1b3eaad5e9a9d6c540bdb2 190 PANTHER PTHR34989 1 188 9.6E-31 T 23-04-2016 RPE_RS14700 28ce86644c1b3eaad5e9a9d6c540bdb2 190 Pfam PF03729 Short repeat of unknown function (DUF308) 27 97 3.6E-12 T 23-04-2016 IPR005325 Protein of unknown function DUF308, membrane RPE_RS14700 28ce86644c1b3eaad5e9a9d6c540bdb2 190 Pfam PF03729 Short repeat of unknown function (DUF308) 83 154 6.1E-14 T 23-04-2016 IPR005325 Protein of unknown function DUF308, membrane RPE_RS14700 28ce86644c1b3eaad5e9a9d6c540bdb2 190 PANTHER PTHR34989:SF1 1 188 9.6E-31 T 23-04-2016 RPE_RS10850 2b20405434540b4a3dddfd449ddd12f8 548 SUPERFAMILY SSF52540 4 91 6.3E-17 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10850 2b20405434540b4a3dddfd449ddd12f8 548 Gene3D G3DSA:3.40.50.300 5 66 3.0E-13 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS10850 2b20405434540b4a3dddfd449ddd12f8 548 Pfam PF00271 Helicase conserved C-terminal domain 5 60 1.6E-8 T 23-04-2016 IPR001650 Helicase, C-terminal RPE_RS13095 d8e0098e629acea609c130ba1342fe5d 105 Pfam PF04977 Septum formation initiator 23 102 2.3E-18 T 23-04-2016 IPR007060 Septum formation initiator FtsL/DivIC GO:0007049 RPE_RS03135 a5ea89b3175fcedc64d69e978c8bf01e 59 Pfam PF00556 Antenna complex alpha/beta subunit 6 41 1.3E-12 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS03135 a5ea89b3175fcedc64d69e978c8bf01e 59 PRINTS PR00673 Light harvesting protein A chain signature 12 31 7.4E-11 T 23-04-2016 IPR018332 Antenna complex, alpha subunit RPE_RS03135 a5ea89b3175fcedc64d69e978c8bf01e 59 PRINTS PR00673 Light harvesting protein A chain signature 5 12 7.4E-11 T 23-04-2016 IPR018332 Antenna complex, alpha subunit RPE_RS03135 a5ea89b3175fcedc64d69e978c8bf01e 59 PRINTS PR00673 Light harvesting protein A chain signature 31 42 7.4E-11 T 23-04-2016 IPR018332 Antenna complex, alpha subunit RPE_RS03135 a5ea89b3175fcedc64d69e978c8bf01e 59 Gene3D G3DSA:4.10.220.20 1 52 7.1E-29 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS03135 a5ea89b3175fcedc64d69e978c8bf01e 59 ProSitePatterns PS00968 Antenna complexes alpha subunits signature. 25 41 - T 23-04-2016 IPR002361 Antenna complex, alpha subunit conserved site GO:0016021|GO:0019684|GO:0019866|GO:0030077|GO:0045156 RPE_RS03135 a5ea89b3175fcedc64d69e978c8bf01e 59 SUPERFAMILY SSF56918 1 50 6.54E-21 T 23-04-2016 IPR000066 Antenna complex, alpha/beta subunit GO:0016021|GO:0019684|GO:0030077|GO:0045156 RPE_RS02400 2ac77636806dfa0de01dda53a15fa7de 377 PANTHER PTHR23537:SF1 1 374 4.8E-77 T 23-04-2016 RPE_RS02400 2ac77636806dfa0de01dda53a15fa7de 377 PANTHER PTHR23537 1 374 4.8E-77 T 23-04-2016 RPE_RS02400 2ac77636806dfa0de01dda53a15fa7de 377 Pfam PF06779 Uncharacterised MFS-type transporter YbfB 7 367 6.8E-90 T 23-04-2016 IPR010645 Uncharacterised MFS-type transporter YbfB RPE_RS02400 2ac77636806dfa0de01dda53a15fa7de 377 Gene3D G3DSA:1.20.1250.20 196 370 1.0E-10 T 23-04-2016 RPE_RS02400 2ac77636806dfa0de01dda53a15fa7de 377 Gene3D G3DSA:1.20.1250.20 10 182 3.7E-20 T 23-04-2016 RPE_RS02400 2ac77636806dfa0de01dda53a15fa7de 377 SUPERFAMILY SSF103473 9 373 2.22E-42 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS22225 d48952dfbdb37be15be4813489b0e056 440 Pfam PF03109 ABC1 family 121 234 2.9E-29 T 23-04-2016 IPR004147 UbiB domain RPE_RS22225 d48952dfbdb37be15be4813489b0e056 440 PANTHER PTHR10566 1 431 6.8E-136 T 23-04-2016 RPE_RS22225 d48952dfbdb37be15be4813489b0e056 440 SUPERFAMILY SSF56112 104 165 1.44E-17 T 23-04-2016 IPR011009 Protein kinase-like domain RPE_RS22225 d48952dfbdb37be15be4813489b0e056 440 SUPERFAMILY SSF56112 203 327 1.44E-17 T 23-04-2016 IPR011009 Protein kinase-like domain RPE_RS22225 d48952dfbdb37be15be4813489b0e056 440 PANTHER PTHR10566:SF65 1 431 6.8E-136 T 23-04-2016 RPE_RS23065 1521d3b5defb837f565797798268878d 546 PANTHER PTHR30008 8 373 5.2E-146 T 23-04-2016 RPE_RS23065 1521d3b5defb837f565797798268878d 546 PANTHER PTHR30008 425 516 5.2E-146 T 23-04-2016 RPE_RS23065 1521d3b5defb837f565797798268878d 546 Pfam PF02601 Exonuclease VII, large subunit 133 403 3.7E-76 T 23-04-2016 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 RPE_RS23065 1521d3b5defb837f565797798268878d 546 Pfam PF02601 Exonuclease VII, large subunit 364 501 1.8E-14 T 23-04-2016 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 RPE_RS23065 1521d3b5defb837f565797798268878d 546 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 17 358 1.2E-113 T 23-04-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 RPE_RS23065 1521d3b5defb837f565797798268878d 546 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 13 504 26.662 T 23-04-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 RPE_RS23065 1521d3b5defb837f565797798268878d 546 Pfam PF13742 OB-fold nucleic acid binding domain 16 110 3.2E-26 T 23-04-2016 IPR025824 OB-fold nucleic acid binding domain GO:0003676 RPE_RS23065 1521d3b5defb837f565797798268878d 546 PANTHER PTHR30008:SF0 8 373 5.2E-146 T 23-04-2016 RPE_RS23065 1521d3b5defb837f565797798268878d 546 PANTHER PTHR30008:SF0 425 516 5.2E-146 T 23-04-2016 RPE_RS23135 79b7612426dd6745c958caa1ef366331 1069 Gene3D G3DSA:3.40.50.300 257 336 1.0E-4 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS23135 79b7612426dd6745c958caa1ef366331 1069 Gene3D G3DSA:3.30.70.1230 66 244 2.7E-31 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RPE_RS23135 79b7612426dd6745c958caa1ef366331 1069 SUPERFAMILY SSF55073 64 245 1.57E-43 T 23-04-2016 IPR029787 Nucleotide cyclase RPE_RS23135 79b7612426dd6745c958caa1ef366331 1069 Pfam PF13191 AAA ATPase domain 264 451 3.1E-14 T 23-04-2016 RPE_RS23135 79b7612426dd6745c958caa1ef366331 1069 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 66 239 2.9E-23 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RPE_RS23135 79b7612426dd6745c958caa1ef366331 1069 Gene3D G3DSA:1.25.40.10 856 1049 4.2E-20 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS23135 79b7612426dd6745c958caa1ef366331 1069 Gene3D G3DSA:1.25.40.10 723 806 4.2E-20 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS23135 79b7612426dd6745c958caa1ef366331 1069 SUPERFAMILY SSF48452 854 1054 4.49E-9 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS23135 79b7612426dd6745c958caa1ef366331 1069 SUPERFAMILY SSF52540 413 525 1.77E-10 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS23135 79b7612426dd6745c958caa1ef366331 1069 SUPERFAMILY SSF52540 256 347 1.77E-10 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS23135 79b7612426dd6745c958caa1ef366331 1069 PANTHER PTHR16305 48 731 1.8E-124 T 23-04-2016 RPE_RS23135 79b7612426dd6745c958caa1ef366331 1069 PANTHER PTHR16305 770 1059 1.8E-124 T 23-04-2016 RPE_RS23135 79b7612426dd6745c958caa1ef366331 1069 SMART SM00044 32 226 6.3E-7 T 23-04-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RPE_RS23135 79b7612426dd6745c958caa1ef366331 1069 PANTHER PTHR16305:SF28 48 731 1.8E-124 T 23-04-2016 RPE_RS23135 79b7612426dd6745c958caa1ef366331 1069 PANTHER PTHR16305:SF28 770 1059 1.8E-124 T 23-04-2016 RPE_RS24565 4e96bbe27de89c18f4d3fc7ec401796a 365 Pfam PF01966 HD domain 202 322 2.5E-14 T 23-04-2016 IPR006674 HD domain RPE_RS24565 4e96bbe27de89c18f4d3fc7ec401796a 365 TIGRFAM TIGR00277 HDIG: HDIG domain 200 292 8.1E-8 T 23-04-2016 IPR006675 HDIG domain RPE_RS24565 4e96bbe27de89c18f4d3fc7ec401796a 365 Gene3D G3DSA:3.40.50.2300 57 133 2.6E-5 T 23-04-2016 RPE_RS24565 4e96bbe27de89c18f4d3fc7ec401796a 365 SUPERFAMILY SSF52172 5 139 3.66E-8 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS24565 4e96bbe27de89c18f4d3fc7ec401796a 365 Gene3D G3DSA:1.10.3210.10 199 358 7.4E-18 T 23-04-2016 IPR006674 HD domain RPE_RS24565 4e96bbe27de89c18f4d3fc7ec401796a 365 SUPERFAMILY SSF109604 176 353 1.27E-25 T 23-04-2016 RPE_RS24565 4e96bbe27de89c18f4d3fc7ec401796a 365 SMART SM00471 197 333 9.7E-6 T 23-04-2016 IPR003607 HD/PDEase domain RPE_RS11465 88d7a3c352e98e7d8ac0c64138b8518e 99 Pfam PF06233 Usg-like family 19 98 3.3E-37 T 23-04-2016 IPR009354 Usg-like UniPathway: UPA00035 RPE_RS20965 0a742ce19a7cd60cf662e90fbe1b4876 77 Pfam PF08972 Domain of unknown function (DUF1902) 4 75 6.1E-31 T 23-04-2016 IPR015066 Protein of unknown function DUF1902 RPE_RS20965 0a742ce19a7cd60cf662e90fbe1b4876 77 SUPERFAMILY SSF143100 4 54 4.84E-11 T 23-04-2016 RPE_RS10640 0e01637ed29ec960be5964055720fb2e 95 Gene3D G3DSA:3.40.1440.10 3 81 4.5E-4 T 23-04-2016 IPR027299 GIY-YIG domain RPE_RS10640 0e01637ed29ec960be5964055720fb2e 95 Pfam PF01541 GIY-YIG catalytic domain 3 75 1.2E-13 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily RPE_RS10640 0e01637ed29ec960be5964055720fb2e 95 SUPERFAMILY SSF82771 1 88 4.97E-20 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily RPE_RS10640 0e01637ed29ec960be5964055720fb2e 95 PANTHER PTHR34477 1 94 1.0E-57 T 23-04-2016 RPE_RS10640 0e01637ed29ec960be5964055720fb2e 95 PANTHER PTHR34477:SF2 1 94 1.0E-57 T 23-04-2016 RPE_RS10640 0e01637ed29ec960be5964055720fb2e 95 SMART SM00465 2 80 0.007 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily RPE_RS05295 1db4fd33b80f3c756751855d013091ce 417 PANTHER PTHR19328 76 417 2.6E-105 T 23-04-2016 RPE_RS05295 1db4fd33b80f3c756751855d013091ce 417 PANTHER PTHR19328:SF33 76 417 2.6E-105 T 23-04-2016 RPE_RS05295 1db4fd33b80f3c756751855d013091ce 417 Gene3D G3DSA:2.120.10.30 68 416 5.4E-58 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like RPE_RS05295 1db4fd33b80f3c756751855d013091ce 417 SUPERFAMILY SSF50952 76 416 1.12E-30 T 23-04-2016 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 RPE_RS05295 1db4fd33b80f3c756751855d013091ce 417 Pfam PF07995 Glucose / Sorbosone dehydrogenase 228 405 2.6E-12 T 23-04-2016 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 RPE_RS07810 e0c7e7765de5055c361b5c427f8236ed 109 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 9 109 15.608 T 23-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RPE_RS07810 e0c7e7765de5055c361b5c427f8236ed 109 PANTHER PTHR34653 35 109 1.2E-20 T 23-04-2016 RPE_RS07810 e0c7e7765de5055c361b5c427f8236ed 109 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 35 109 2.3E-13 T 23-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RPE_RS07810 e0c7e7765de5055c361b5c427f8236ed 109 Pfam PF02049 Flagellar hook-basal body complex protein FliE 35 109 2.3E-21 T 23-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RPE_RS02075 40fb7b1f0945c93604fa6ca4b17f6a7e 363 SUPERFAMILY SSF51197 110 264 2.33E-6 T 23-04-2016 RPE_RS20180 059e2b02d0161d9d2b3345d41ec5ef1a 343 Gene3D G3DSA:3.40.1360.10 252 330 2.5E-4 T 23-04-2016 RPE_RS20180 059e2b02d0161d9d2b3345d41ec5ef1a 343 Pfam PF13362 Toprim domain 232 321 4.7E-20 T 23-04-2016 IPR006171 Toprim domain RPE_RS00155 8051fee221208fe1738916445092478d 166 Gene3D G3DSA:2.40.50.90 48 152 1.5E-15 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RPE_RS00155 8051fee221208fe1738916445092478d 166 Pfam PF00565 Staphylococcal nuclease homologue 77 155 8.6E-8 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RPE_RS00155 8051fee221208fe1738916445092478d 166 PANTHER PTHR12302 50 154 1.5E-15 T 23-04-2016 RPE_RS00155 8051fee221208fe1738916445092478d 166 PANTHER PTHR12302:SF0 50 154 1.5E-15 T 23-04-2016 RPE_RS00155 8051fee221208fe1738916445092478d 166 SUPERFAMILY SSF50199 47 162 8.89E-20 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RPE_RS00155 8051fee221208fe1738916445092478d 166 SMART SM00318 47 164 6.2E-4 T 23-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold RPE_RS22330 34015c42788c52a4cee5795d4add419b 142 Gene3D G3DSA:3.10.129.10 3 138 1.1E-37 T 23-04-2016 IPR029069 HotDog domain RPE_RS22330 34015c42788c52a4cee5795d4add419b 142 Pfam PF03061 Thioesterase superfamily 52 120 4.5E-8 T 23-04-2016 IPR006683 Thioesterase domain RPE_RS22330 34015c42788c52a4cee5795d4add419b 142 SUPERFAMILY SSF54637 8 134 6.74E-22 T 23-04-2016 IPR029069 HotDog domain RPE_RS06320 92cae4c96c39cc6e13e317ef13047180 406 SUPERFAMILY SSF56300 5 310 1.08E-48 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RPE_RS06320 92cae4c96c39cc6e13e317ef13047180 406 PANTHER PTHR30337 2 312 3.0E-53 T 23-04-2016 RPE_RS06320 92cae4c96c39cc6e13e317ef13047180 406 PANTHER PTHR30337:SF7 2 312 3.0E-53 T 23-04-2016 RPE_RS06320 92cae4c96c39cc6e13e317ef13047180 406 PIRSF PIRSF033091 1 404 9.7E-89 T 23-04-2016 IPR014576 Predicted phosphoesterase, YhaO type RPE_RS06320 92cae4c96c39cc6e13e317ef13047180 406 Pfam PF00149 Calcineurin-like phosphoesterase 5 197 2.0E-10 T 23-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 RPE_RS06320 92cae4c96c39cc6e13e317ef13047180 406 Gene3D G3DSA:3.60.21.10 3 245 2.8E-38 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RPE_RS21945 54f4deca02d35e7e58953857fa01535e 293 PANTHER PTHR22602 3 261 2.7E-60 T 23-04-2016 RPE_RS21945 54f4deca02d35e7e58953857fa01535e 293 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 155 219 1.0E-24 T 23-04-2016 IPR017703 YgfZ/GcvT conserved site RPE_RS21945 54f4deca02d35e7e58953857fa01535e 293 SUPERFAMILY SSF103025 5 211 2.51E-54 T 23-04-2016 RPE_RS21945 54f4deca02d35e7e58953857fa01535e 293 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 195 271 5.4E-9 T 23-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RPE_RS21945 54f4deca02d35e7e58953857fa01535e 293 PANTHER PTHR22602:SF0 3 261 2.7E-60 T 23-04-2016 RPE_RS21945 54f4deca02d35e7e58953857fa01535e 293 Gene3D G3DSA:3.30.70.1400 9 97 1.2E-23 T 23-04-2016 RPE_RS21945 54f4deca02d35e7e58953857fa01535e 293 Pfam PF01571 Aminomethyltransferase folate-binding domain 10 108 1.8E-9 T 23-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal RPE_RS10885 a8c59a03126ba909bb59b4783d83c79c 446 Pfam PF14236 Domain of unknown function (DUF4338) 186 371 1.4E-10 T 23-04-2016 IPR025639 Domain of unknown function DUF4338 RPE_RS01330 44364687d8f5c98919cb429518ea047c 407 Pfam PF13458 Periplasmic binding protein 37 390 2.2E-63 T 23-04-2016 IPR028081 Leucine-binding protein domain RPE_RS01330 44364687d8f5c98919cb429518ea047c 407 Gene3D G3DSA:3.40.50.2300 37 235 4.3E-45 T 23-04-2016 RPE_RS01330 44364687d8f5c98919cb429518ea047c 407 SUPERFAMILY SSF53822 37 398 1.62E-74 T 23-04-2016 IPR028082 Periplasmic binding protein-like I RPE_RS01330 44364687d8f5c98919cb429518ea047c 407 PANTHER PTHR30483 1 405 1.4E-210 T 23-04-2016 RPE_RS01330 44364687d8f5c98919cb429518ea047c 407 PANTHER PTHR30483:SF11 1 405 1.4E-210 T 23-04-2016 RPE_RS05815 1072aaaad7ac54f3f4a58b4e1bc7d3c0 243 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 189 235 2.3E-11 T 23-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RPE_RS05815 1072aaaad7ac54f3f4a58b4e1bc7d3c0 243 PANTHER PTHR30435:SF18 1 237 1.8E-31 T 23-04-2016 RPE_RS05815 1072aaaad7ac54f3f4a58b4e1bc7d3c0 243 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 3 119 8.3E-33 T 23-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G RPE_RS05815 1072aaaad7ac54f3f4a58b4e1bc7d3c0 243 SUPERFAMILY SSF117143 76 165 2.75E-12 T 23-04-2016 RPE_RS05815 1072aaaad7ac54f3f4a58b4e1bc7d3c0 243 PANTHER PTHR30435 1 237 1.8E-31 T 23-04-2016 RPE_RS05815 1072aaaad7ac54f3f4a58b4e1bc7d3c0 243 TIGRFAM TIGR02490 flgF: flagellar basal-body rod protein FlgF 5 217 4.4E-57 T 23-04-2016 IPR012836 Flagellar basal-body rod FlgF GO:0030694|GO:0071973 RPE_RS10910 1c8f49b7b1d1824aa4b77c88ab673626 137 Pfam PF05168 HEPN domain 8 135 6.9E-6 T 23-04-2016 IPR007842 HEPN domain RPE_RS10910 1c8f49b7b1d1824aa4b77c88ab673626 137 Gene3D G3DSA:1.20.120.330 11 89 6.9E-5 T 23-04-2016 RPE_RS16465 881edeedcdf90333d92867448884ffc0 181 Pfam PF01066 CDP-alcohol phosphatidyltransferase 3 66 2.8E-15 T 23-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RPE_RS16465 881edeedcdf90333d92867448884ffc0 181 PANTHER PTHR14269 3 174 9.7E-33 T 23-04-2016 RPE_RS16465 881edeedcdf90333d92867448884ffc0 181 PIRSF PIRSF000847 1 181 5.2E-47 T 23-04-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 RPE_RS00980 adf11f57ba57aa874966f7629703596b 370 PANTHER PTHR13767 49 355 1.1E-120 T 23-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 RPE_RS00980 adf11f57ba57aa874966f7629703596b 370 SUPERFAMILY SSF55120 60 290 4.6E-76 T 23-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RPE_RS00980 adf11f57ba57aa874966f7629703596b 370 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 61 269 1.5E-65 T 23-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 RPE_RS00980 adf11f57ba57aa874966f7629703596b 370 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 231 294 2.2E-18 T 23-04-2016 IPR032819 tRNA pseudouridylate synthase B, C-terminal RPE_RS00980 adf11f57ba57aa874966f7629703596b 370 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 82 230 1.9E-49 T 23-04-2016 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 RPE_RS00980 adf11f57ba57aa874966f7629703596b 370 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 298 355 6.5E-6 T 23-04-2016 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 RPE_RS00980 adf11f57ba57aa874966f7629703596b 370 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 60 355 18.402 T 23-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 RPE_RS00980 adf11f57ba57aa874966f7629703596b 370 PANTHER PTHR13767:SF2 49 355 1.1E-120 T 23-04-2016 RPE_RS07720 008bef2e6415412db5e9d9502ac5e7d5 252 PRINTS PR01008 Flagellar L-ring protein signature 192 208 4.3E-26 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RPE_RS07720 008bef2e6415412db5e9d9502ac5e7d5 252 PRINTS PR01008 Flagellar L-ring protein signature 229 243 4.3E-26 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RPE_RS07720 008bef2e6415412db5e9d9502ac5e7d5 252 PRINTS PR01008 Flagellar L-ring protein signature 213 227 4.3E-26 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RPE_RS07720 008bef2e6415412db5e9d9502ac5e7d5 252 PRINTS PR01008 Flagellar L-ring protein signature 89 101 4.3E-26 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RPE_RS07720 008bef2e6415412db5e9d9502ac5e7d5 252 PRINTS PR01008 Flagellar L-ring protein signature 166 181 4.3E-26 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RPE_RS07720 008bef2e6415412db5e9d9502ac5e7d5 252 PANTHER PTHR34933 41 252 2.2E-69 T 23-04-2016 RPE_RS07720 008bef2e6415412db5e9d9502ac5e7d5 252 Hamap MF_00415 Flagellar L-ring protein [flgH]. 7 250 24.214 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RPE_RS07720 008bef2e6415412db5e9d9502ac5e7d5 252 Pfam PF02107 Flagellar L-ring protein 69 251 8.2E-56 T 23-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 RPE_RS07720 008bef2e6415412db5e9d9502ac5e7d5 252 PANTHER PTHR34933:SF1 41 252 2.2E-69 T 23-04-2016 RPE_RS16505 23d9ee53cbcc577df2641e24b08fb3a0 150 SUPERFAMILY SSF102400 1 140 2.22E-38 T 23-04-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 RPE_RS16505 23d9ee53cbcc577df2641e24b08fb3a0 150 Gene3D G3DSA:3.40.50.10110 1 140 3.5E-37 T 23-04-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 RPE_RS16505 23d9ee53cbcc577df2641e24b08fb3a0 150 Pfam PF04364 DNA polymerase III chi subunit, HolC 1 135 1.2E-35 T 23-04-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 RPE_RS02545 b6d2e774dbd7b23bbb5b655d4700eb20 161 Pfam PF03061 Thioesterase superfamily 32 94 5.2E-5 T 23-04-2016 IPR006683 Thioesterase domain RPE_RS02545 b6d2e774dbd7b23bbb5b655d4700eb20 161 Gene3D G3DSA:3.10.129.10 12 148 6.1E-24 T 23-04-2016 IPR029069 HotDog domain RPE_RS02545 b6d2e774dbd7b23bbb5b655d4700eb20 161 PANTHER PTHR31793:SF6 15 160 9.6E-41 T 23-04-2016 RPE_RS02545 b6d2e774dbd7b23bbb5b655d4700eb20 161 PANTHER PTHR31793 15 160 9.6E-41 T 23-04-2016 RPE_RS02545 b6d2e774dbd7b23bbb5b655d4700eb20 161 SUPERFAMILY SSF54637 11 151 1.19E-25 T 23-04-2016 IPR029069 HotDog domain RPE_RS17235 a9796822e1a0e7af0af3f842c6a120f3 289 PANTHER PTHR21631 1 271 5.2E-109 T 23-04-2016 RPE_RS17235 a9796822e1a0e7af0af3f842c6a120f3 289 PANTHER PTHR21631:SF19 1 271 5.2E-109 T 23-04-2016 RPE_RS17235 a9796822e1a0e7af0af3f842c6a120f3 289 SUPERFAMILY SSF51621 4 262 1.66E-61 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RPE_RS17235 a9796822e1a0e7af0af3f842c6a120f3 289 Hamap MF_01299 Oxaloacetate decarboxylase. 1 288 48.658 T 23-04-2016 IPR023687 Oxaloacetate decarboxylase, bacterial GO:0008948 KEGG: 00620+4.1.1.3|MetaCyc: PWY-6339 RPE_RS17235 a9796822e1a0e7af0af3f842c6a120f3 289 Gene3D G3DSA:3.20.20.60 4 253 3.4E-54 T 23-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RPE_RS17235 a9796822e1a0e7af0af3f842c6a120f3 289 Pfam PF13714 Phosphoenolpyruvate phosphomutase 16 249 1.3E-41 T 23-04-2016 RPE_RS23595 f4fab294fd274f90b9ddc3d8b7eacb47 107 Gene3D G3DSA:2.30.30.110 1 106 7.2E-13 T 23-04-2016 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor RPE_RS23595 f4fab294fd274f90b9ddc3d8b7eacb47 107 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 2 103 9.2E-18 T 23-04-2016 IPR003477 mRNA interferase PemK-like protein GO:0003677 RPE_RS23595 f4fab294fd274f90b9ddc3d8b7eacb47 107 SUPERFAMILY SSF50118 1 106 3.27E-23 T 23-04-2016 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor RPE_RS15155 ee9a61f358d28491c328f4f3e8efbb97 753 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 14 748 3.5E-254 T 23-04-2016 RPE_RS15155 ee9a61f358d28491c328f4f3e8efbb97 753 PANTHER PTHR10169 12 485 2.4E-187 T 23-04-2016 RPE_RS15155 ee9a61f358d28491c328f4f3e8efbb97 753 Gene3D G3DSA:3.90.199.10 36 241 1.9E-106 T 23-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 RPE_RS15155 ee9a61f358d28491c328f4f3e8efbb97 753 Gene3D G3DSA:3.90.199.10 340 404 1.9E-106 T 23-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 RPE_RS15155 ee9a61f358d28491c328f4f3e8efbb97 753 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 657 694 5.6E-5 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RPE_RS15155 ee9a61f358d28491c328f4f3e8efbb97 753 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 558 603 0.26 T 23-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RPE_RS15155 ee9a61f358d28491c328f4f3e8efbb97 753 PANTHER PTHR10169:SF48 12 485 2.4E-187 T 23-04-2016 RPE_RS15155 ee9a61f358d28491c328f4f3e8efbb97 753 PANTHER PTHR10169:SF48 509 617 2.4E-187 T 23-04-2016 RPE_RS15155 ee9a61f358d28491c328f4f3e8efbb97 753 Gene3D G3DSA:2.120.10.90 508 718 1.5E-27 T 23-04-2016 RPE_RS15155 ee9a61f358d28491c328f4f3e8efbb97 753 PANTHER PTHR10169 509 617 2.4E-187 T 23-04-2016 RPE_RS15155 ee9a61f358d28491c328f4f3e8efbb97 753 SMART SM00434 16 468 1.2E-229 T 23-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS15155 ee9a61f358d28491c328f4f3e8efbb97 753 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 37 469 1.4E-137 T 23-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RPE_RS15155 ee9a61f358d28491c328f4f3e8efbb97 753 SUPERFAMILY SSF56719 36 484 5.1E-152 T 23-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 RPE_RS15155 ee9a61f358d28491c328f4f3e8efbb97 753 SUPERFAMILY SSF101904 514 748 4.58E-48 T 23-04-2016 RPE_RS15155 ee9a61f358d28491c328f4f3e8efbb97 753 Gene3D G3DSA:3.30.1360.40 242 338 1.3E-27 T 23-04-2016 IPR024946 Arginine repressor C-terminal-like domain RPE_RS15155 ee9a61f358d28491c328f4f3e8efbb97 753 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 9 749 31.924 T 23-04-2016 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RPE_RS21170 d708069e2d56d5213967bced2a734c15 557 Pfam PF05159 Capsule polysaccharide biosynthesis protein 335 495 4.9E-5 T 23-04-2016 IPR007833 Capsule polysaccharide biosynthesis GO:0000271|GO:0015774 RPE_RS21170 d708069e2d56d5213967bced2a734c15 557 SUPERFAMILY SSF53756 206 508 6.09E-12 T 23-04-2016 RPE_RS07625 d4b06fcbe1b3e2998b976be770cf7343 273 PANTHER PTHR11624 15 271 2.2E-59 T 23-04-2016 IPR033247 Transketolase family RPE_RS07625 d4b06fcbe1b3e2998b976be770cf7343 273 Gene3D G3DSA:3.40.50.970 15 269 1.8E-67 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS07625 d4b06fcbe1b3e2998b976be770cf7343 273 SUPERFAMILY SSF52518 16 265 6.55E-64 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS07625 d4b06fcbe1b3e2998b976be770cf7343 273 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 63 245 2.7E-28 T 23-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 RPE_RS15445 1e0235d40bbed422a8c7df16789a012f 273 SUPERFAMILY SSF46626 33 152 6.89E-24 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS15445 1e0235d40bbed422a8c7df16789a012f 273 PIRSF PIRSF038455 5 273 8.3E-64 T 23-04-2016 IPR025710 SoxAX cytochrome complex subunit A GO:0009055|GO:0016491|GO:0019417|GO:0020037|GO:0070069 RPE_RS15445 1e0235d40bbed422a8c7df16789a012f 273 Gene3D G3DSA:1.10.760.10 79 272 6.3E-58 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS15445 1e0235d40bbed422a8c7df16789a012f 273 TIGRFAM TIGR04484 thiosulf_SoxA: sulfur oxidation c-type cytochrome SoxA 46 273 1.1E-76 T 23-04-2016 IPR025710 SoxAX cytochrome complex subunit A GO:0009055|GO:0016491|GO:0019417|GO:0020037|GO:0070069 RPE_RS15445 1e0235d40bbed422a8c7df16789a012f 273 SUPERFAMILY SSF46626 157 272 2.43E-32 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS07065 a9e98d8c34a0c477dac6acbae86dfc5b 95 SUPERFAMILY SSF47598 7 84 6.11E-20 T 23-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 RPE_RS07065 a9e98d8c34a0c477dac6acbae86dfc5b 95 Pfam PF08681 Protein of unknown function (DUF1778) 10 88 1.8E-22 T 23-04-2016 IPR014795 Vibrio phage ICP1, Orf50 RPE_RS07065 a9e98d8c34a0c477dac6acbae86dfc5b 95 PANTHER PTHR35401:SF2 6 94 5.0E-20 T 23-04-2016 RPE_RS07065 a9e98d8c34a0c477dac6acbae86dfc5b 95 PANTHER PTHR35401 6 94 5.0E-20 T 23-04-2016 RPE_RS07065 a9e98d8c34a0c477dac6acbae86dfc5b 95 Gene3D G3DSA:1.20.5.780 6 91 1.2E-25 T 23-04-2016 RPE_RS01445 c98cb12b9a5d6f545b1b4e98c467e205 197 Pfam PF14235 Domain of unknown function (DUF4337) 20 188 5.1E-43 T 23-04-2016 IPR025570 Protein of unknown function DUF4337 RPE_RS16020 d4a962ca6a3597446c4b58a4d3539f97 325 PANTHER PTHR10366 277 311 2.4E-42 T 23-04-2016 RPE_RS16020 d4a962ca6a3597446c4b58a4d3539f97 325 PANTHER PTHR10366 5 258 2.4E-42 T 23-04-2016 RPE_RS16020 d4a962ca6a3597446c4b58a4d3539f97 325 SUPERFAMILY SSF51735 5 311 1.0E-45 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS16020 d4a962ca6a3597446c4b58a4d3539f97 325 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 234 4.9E-26 T 23-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 RPE_RS16020 d4a962ca6a3597446c4b58a4d3539f97 325 Gene3D G3DSA:3.40.50.720 5 194 4.0E-35 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS21255 a4c2eb28821f4d29704f3a534d86162a 355 Gene3D G3DSA:3.90.25.10 205 350 3.8E-43 T 23-04-2016 RPE_RS21255 a4c2eb28821f4d29704f3a534d86162a 355 SUPERFAMILY SSF51735 5 335 2.75E-65 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS21255 a4c2eb28821f4d29704f3a534d86162a 355 TIGRFAM TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase 7 349 2.0E-149 T 23-04-2016 IPR013445 CDP-glucose 4,6-dehydratase KEGG: 00520+4.2.1.45|MetaCyc: PWY-5833|UniPathway: UPA00055|UniPathway: UPA00281 RPE_RS21255 a4c2eb28821f4d29704f3a534d86162a 355 Pfam PF16363 GDP-mannose 4,6 dehydratase 14 320 1.9E-35 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS21255 a4c2eb28821f4d29704f3a534d86162a 355 PANTHER PTHR10366 12 351 2.6E-144 T 23-04-2016 RPE_RS21255 a4c2eb28821f4d29704f3a534d86162a 355 PANTHER PTHR10366:SF33 12 351 2.6E-144 T 23-04-2016 RPE_RS21255 a4c2eb28821f4d29704f3a534d86162a 355 Gene3D G3DSA:3.40.50.720 12 204 6.0E-44 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS24445 0375a1d354b56c1c1b3121035accc601 337 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 24 332 1.2E-119 T 23-04-2016 IPR005673 ABC transporter, phosphate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 RPE_RS24445 0375a1d354b56c1c1b3121035accc601 337 Gene3D G3DSA:3.40.190.10 186 334 2.0E-31 T 23-04-2016 RPE_RS24445 0375a1d354b56c1c1b3121035accc601 337 PIRSF PIRSF002756 4 336 5.2E-104 T 23-04-2016 IPR005673 ABC transporter, phosphate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 RPE_RS24445 0375a1d354b56c1c1b3121035accc601 337 Pfam PF12849 PBP superfamily domain 19 304 2.6E-62 T 23-04-2016 IPR024370 PBP domain RPE_RS24445 0375a1d354b56c1c1b3121035accc601 337 Gene3D G3DSA:3.40.190.10 23 165 3.1E-54 T 23-04-2016 RPE_RS24445 0375a1d354b56c1c1b3121035accc601 337 PANTHER PTHR30570 7 331 4.8E-133 T 23-04-2016 RPE_RS24445 0375a1d354b56c1c1b3121035accc601 337 SUPERFAMILY SSF53850 24 332 3.98E-95 T 23-04-2016 RPE_RS24445 0375a1d354b56c1c1b3121035accc601 337 PANTHER PTHR30570:SF0 7 331 4.8E-133 T 23-04-2016 RPE_RS11205 ede9c1c5f362a66622540b4b7df051c7 147 Pfam PF07845 Protein of unknown function (DUF1636) 28 135 2.1E-25 T 23-04-2016 IPR012863 Protein of unknown function DUF1636 RPE_RS23475 f5663dfd7d1b5c9ef9f66b670e206891 247 PANTHER PTHR34979 1 247 1.8E-27 T 23-04-2016 RPE_RS23475 f5663dfd7d1b5c9ef9f66b670e206891 247 Pfam PF03591 AzlC protein 26 167 1.9E-26 T 23-04-2016 IPR011606 Branched-chain amino acid transport, permease RPE_RS09155 a589ab3a26de7da72931804d2550b60b 212 Pfam PF09917 Uncharacterized protein conserved in bacteria (DUF2147) 33 141 2.0E-23 T 23-04-2016 IPR019223 Domain of unknown function DUF2147 RPE_RS09155 a589ab3a26de7da72931804d2550b60b 212 PANTHER PTHR36919 28 160 1.6E-45 T 23-04-2016 RPE_RS09155 a589ab3a26de7da72931804d2550b60b 212 PANTHER PTHR36919:SF2 28 160 1.6E-45 T 23-04-2016 RPE_RS17680 c96b60f2c0d991c4bff6decf74e919b4 1162 SUPERFAMILY SSF52518 47 203 4.12E-16 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS17680 c96b60f2c0d991c4bff6decf74e919b4 1162 Gene3D G3DSA:3.40.50.970 422 652 2.9E-16 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS17680 c96b60f2c0d991c4bff6decf74e919b4 1162 SUPERFAMILY SSF52518 438 622 9.81E-14 T 23-04-2016 IPR029061 Thiamin diphosphate-binding fold RPE_RS17680 c96b60f2c0d991c4bff6decf74e919b4 1162 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 729 915 8.3E-24 T 23-04-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 RPE_RS17680 c96b60f2c0d991c4bff6decf74e919b4 1162 Gene3D G3DSA:3.40.920.10 721 917 2.3E-15 T 23-04-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 RPE_RS17680 c96b60f2c0d991c4bff6decf74e919b4 1162 SUPERFAMILY SSF53323 720 966 2.35E-30 T 23-04-2016 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 RPE_RS17680 c96b60f2c0d991c4bff6decf74e919b4 1162 PANTHER PTHR18968:SF134 579 757 2.8E-231 T 23-04-2016 RPE_RS17680 c96b60f2c0d991c4bff6decf74e919b4 1162 PANTHER PTHR18968:SF134 178 561 2.8E-231 T 23-04-2016 RPE_RS17680 c96b60f2c0d991c4bff6decf74e919b4 1162 PANTHER PTHR18968 579 757 2.8E-231 T 23-04-2016 RPE_RS17680 c96b60f2c0d991c4bff6decf74e919b4 1162 PANTHER PTHR18968 178 561 2.8E-231 T 23-04-2016 RPE_RS17680 c96b60f2c0d991c4bff6decf74e919b4 1162 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 459 545 2.0E-5 T 23-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RPE_RS14740 ae1e76ce80adeb0e1a8a0b00c75bf99a 366 Pfam PF13515 Fusaric acid resistance protein-like 210 335 7.1E-25 T 23-04-2016 RPE_RS24350 547b64baf15ca5e2af0d70c415b946e7 665 TIGRFAM TIGR03768 RPA4764: metallophosphoesterase, RPA4764 family 89 650 2.4E-291 T 23-04-2016 IPR022507 Metallophosphoesterase, RPA4764 RPE_RS24350 547b64baf15ca5e2af0d70c415b946e7 665 SUPERFAMILY SSF56300 357 556 2.24E-26 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RPE_RS24350 547b64baf15ca5e2af0d70c415b946e7 665 SUPERFAMILY SSF56300 125 214 2.24E-26 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RPE_RS24350 547b64baf15ca5e2af0d70c415b946e7 665 SUPERFAMILY SSF56300 243 270 2.24E-26 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RPE_RS24350 547b64baf15ca5e2af0d70c415b946e7 665 Gene3D G3DSA:3.60.21.10 122 265 1.7E-51 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RPE_RS24350 547b64baf15ca5e2af0d70c415b946e7 665 Gene3D G3DSA:3.60.21.10 354 555 1.7E-51 T 23-04-2016 IPR029052 Metallo-dependent phosphatase-like RPE_RS14310 2763d524f7761884055c21310799f063 69 Pfam PF11003 Protein of unknown function (DUF2842) 6 66 4.4E-20 T 23-04-2016 IPR021265 Protein of unknown function DUF2842 RPE_RS01325 7e377043ce2e92c661278b5b6ea208ce 120 PANTHER PTHR38446:SF1 2 120 8.6E-37 T 23-04-2016 RPE_RS01325 7e377043ce2e92c661278b5b6ea208ce 120 Pfam PF06993 Protein of unknown function (DUF1304) 10 118 1.5E-42 T 23-04-2016 IPR009732 Protein of unknown function DUF1304 RPE_RS01325 7e377043ce2e92c661278b5b6ea208ce 120 PANTHER PTHR38446 2 120 8.6E-37 T 23-04-2016 RPE_RS16445 fe186df573c87081c07bc35c199c4c8c 307 PANTHER PTHR33281:SF3 1 298 1.1E-63 T 23-04-2016 RPE_RS16445 fe186df573c87081c07bc35c199c4c8c 307 PANTHER PTHR33281 1 298 1.1E-63 T 23-04-2016 RPE_RS16445 fe186df573c87081c07bc35c199c4c8c 307 Pfam PF01062 Bestrophin, RFP-TM, chloride channel 1 286 3.5E-60 T 23-04-2016 IPR021134 Bestrophin/UPF0187 RPE_RS21830 40d4edc12082d71224dde40773ec5e68 287 SUPERFAMILY SSF54675 10 110 1.06E-19 T 23-04-2016 RPE_RS21830 40d4edc12082d71224dde40773ec5e68 287 PIRSF PIRSF006250 5 284 1.1E-56 T 23-04-2016 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD RPE_RS21830 40d4edc12082d71224dde40773ec5e68 287 SUPERFAMILY SSF51690 111 281 1.37E-38 T 23-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 RPE_RS21830 40d4edc12082d71224dde40773ec5e68 287 PANTHER PTHR11948 9 282 5.6E-53 T 23-04-2016 RPE_RS21830 40d4edc12082d71224dde40773ec5e68 287 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 23 108 3.1E-17 T 23-04-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 RPE_RS21830 40d4edc12082d71224dde40773ec5e68 287 Gene3D G3DSA:3.20.20.70 135 271 1.2E-34 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS21830 40d4edc12082d71224dde40773ec5e68 287 PANTHER PTHR11948:SF1 9 282 5.6E-53 T 23-04-2016 RPE_RS21830 40d4edc12082d71224dde40773ec5e68 287 Gene3D G3DSA:3.90.1170.20 10 134 1.2E-24 T 23-04-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 RPE_RS21830 40d4edc12082d71224dde40773ec5e68 287 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 111 279 6.5E-29 T 23-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 RPE_RS21830 40d4edc12082d71224dde40773ec5e68 287 TIGRFAM TIGR01334 modD: modD protein 10 282 1.3E-81 T 23-04-2016 IPR006242 Putative pyrophosphorylase ModD GO:0016763 KEGG: 00230+2.4.2.-|KEGG: 00514+2.4.2.- RPE_RS14995 28a832e115b7f91f3a1fdfcbc87ddcf3 228 Pfam PF06823 Protein of unknown function (DUF1236) 158 227 1.2E-18 T 23-04-2016 IPR009642 Protein of unknown function DUF1236 RPE_RS12855 05d37a79b6180691d32f51a78406c097 151 Gene3D G3DSA:3.10.129.10 9 148 1.3E-51 T 23-04-2016 IPR029069 HotDog domain RPE_RS12855 05d37a79b6180691d32f51a78406c097 151 Pfam PF07977 FabA-like domain 19 143 1.1E-32 T 23-04-2016 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 RPE_RS12855 05d37a79b6180691d32f51a78406c097 151 SUPERFAMILY SSF54637 12 149 5.16E-44 T 23-04-2016 IPR029069 HotDog domain RPE_RS12855 05d37a79b6180691d32f51a78406c097 151 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 10 148 4.1E-53 T 23-04-2016 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 RPE_RS12855 05d37a79b6180691d32f51a78406c097 151 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 10 151 31.631 T 23-04-2016 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 RPE_RS12855 05d37a79b6180691d32f51a78406c097 151 PANTHER PTHR30272 11 151 1.1E-67 T 23-04-2016 RPE_RS00100 b6aba5adfea6138094fe033fcf7d0075 199 PANTHER PTHR13887 6 197 4.5E-70 T 23-04-2016 RPE_RS00100 b6aba5adfea6138094fe033fcf7d0075 199 PIRSF PIRSF006386 1 198 4.3E-58 T 23-04-2016 IPR014440 HCCA isomerase/glutathione S-transferase kappa RPE_RS00100 b6aba5adfea6138094fe033fcf7d0075 199 SUPERFAMILY SSF52833 7 195 2.17E-36 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS00100 b6aba5adfea6138094fe033fcf7d0075 199 PANTHER PTHR13887:SF22 6 197 4.5E-70 T 23-04-2016 RPE_RS00100 b6aba5adfea6138094fe033fcf7d0075 199 Pfam PF01323 DSBA-like thioredoxin domain 7 197 6.8E-28 T 23-04-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 RPE_RS00100 b6aba5adfea6138094fe033fcf7d0075 199 Gene3D G3DSA:3.40.30.10 6 197 7.1E-49 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS10140 349e7ea744e67c1febd7d8c774ae7337 157 Gene3D G3DSA:3.10.129.10 6 126 4.8E-32 T 23-04-2016 IPR029069 HotDog domain RPE_RS10140 349e7ea744e67c1febd7d8c774ae7337 157 SUPERFAMILY SSF54637 6 128 5.65E-32 T 23-04-2016 IPR029069 HotDog domain RPE_RS10140 349e7ea744e67c1febd7d8c774ae7337 157 Pfam PF07977 FabA-like domain 4 122 1.6E-18 T 23-04-2016 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 RPE_RS10140 349e7ea744e67c1febd7d8c774ae7337 157 PANTHER PTHR30272 6 132 6.2E-36 T 23-04-2016 RPE_RS14260 93f8f365c2edcb3305c9d590a9a1d0e0 402 PANTHER PTHR30477 5 322 3.8E-63 T 23-04-2016 RPE_RS14260 93f8f365c2edcb3305c9d590a9a1d0e0 402 Pfam PF00950 ABC 3 transport family 20 283 7.3E-53 T 23-04-2016 IPR001626 ABC-3 GO:0005524|GO:0006810|GO:0016020|GO:0042626 RPE_RS14260 93f8f365c2edcb3305c9d590a9a1d0e0 402 Gene3D G3DSA:1.10.3470.10 58 281 2.7E-14 T 23-04-2016 IPR029022 ABC transporter, BtuC-like RPE_RS14260 93f8f365c2edcb3305c9d590a9a1d0e0 402 SUPERFAMILY SSF81345 21 281 7.72E-27 T 23-04-2016 IPR029022 ABC transporter, BtuC-like RPE_RS14260 93f8f365c2edcb3305c9d590a9a1d0e0 402 PANTHER PTHR30477:SF3 5 322 3.8E-63 T 23-04-2016 RPE_RS09025 000be28736f42047493746b7de8ec7ec 446 Pfam PF00691 OmpA family 342 439 4.0E-18 T 23-04-2016 IPR006665 OmpA-like domain RPE_RS09025 000be28736f42047493746b7de8ec7ec 446 Gene3D G3DSA:3.30.1330.60 331 445 4.9E-35 T 23-04-2016 IPR006665 OmpA-like domain RPE_RS09025 000be28736f42047493746b7de8ec7ec 446 SUPERFAMILY SSF103088 327 445 8.11E-32 T 23-04-2016 IPR006665 OmpA-like domain RPE_RS09025 000be28736f42047493746b7de8ec7ec 446 PRINTS PR01021 OMPA domain signature 343 365 3.8E-7 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RPE_RS09025 000be28736f42047493746b7de8ec7ec 446 PRINTS PR01021 OMPA domain signature 373 388 3.8E-7 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RPE_RS09025 000be28736f42047493746b7de8ec7ec 446 PRINTS PR01021 OMPA domain signature 388 404 3.8E-7 T 23-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RPE_RS09025 000be28736f42047493746b7de8ec7ec 446 PANTHER PTHR30128 341 445 1.2E-33 T 23-04-2016 RPE_RS05050 cf02f56e770d21e37f9fab5aa4701ac3 340 Gene3D G3DSA:3.40.50.1000 70 85 1.5E-17 T 23-04-2016 IPR023214 HAD-like domain RPE_RS05050 cf02f56e770d21e37f9fab5aa4701ac3 340 Gene3D G3DSA:3.40.50.1000 168 303 1.5E-17 T 23-04-2016 IPR023214 HAD-like domain RPE_RS05050 cf02f56e770d21e37f9fab5aa4701ac3 340 Pfam PF12710 haloacid dehalogenase-like hydrolase 72 276 1.2E-23 T 23-04-2016 RPE_RS05050 cf02f56e770d21e37f9fab5aa4701ac3 340 SUPERFAMILY SSF56784 71 311 2.49E-25 T 23-04-2016 IPR023214 HAD-like domain RPE_RS00605 d1f54cf27142a4eac18fd055100bde2b 267 Gene3D G3DSA:3.90.226.10 2 265 1.1E-66 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS00605 d1f54cf27142a4eac18fd055100bde2b 267 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 108 128 - T 23-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 RPE_RS00605 d1f54cf27142a4eac18fd055100bde2b 267 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 266 6.8E-52 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RPE_RS00605 d1f54cf27142a4eac18fd055100bde2b 267 SUPERFAMILY SSF52096 2 267 2.41E-71 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS00605 d1f54cf27142a4eac18fd055100bde2b 267 PANTHER PTHR11941 4 264 6.7E-73 T 23-04-2016 RPE_RS21820 59ebb9c5961dd64fdb93b77fd75b2bce 188 Pfam PF10649 Protein of unknown function (DUF2478) 8 164 2.5E-49 T 23-04-2016 IPR018912 Protein of unknown function DUF2478 RPE_RS04740 02018c32fcf39626ce3840696ac51238 201 Gene3D G3DSA:3.10.540.10 13 96 1.0E-38 T 23-04-2016 RPE_RS04740 02018c32fcf39626ce3840696ac51238 201 Pfam PF06938 Protein of unknown function (DUF1285) 46 189 9.6E-56 T 23-04-2016 IPR010707 Protein of unknown function DUF1285 RPE_RS04740 02018c32fcf39626ce3840696ac51238 201 Gene3D G3DSA:2.30.270.10 97 165 5.3E-25 T 23-04-2016 IPR023361 Protein of unknown function DUF1285, beta-roll domain RPE_RS04740 02018c32fcf39626ce3840696ac51238 201 PIRSF PIRSF029557 1 201 1.8E-86 T 23-04-2016 IPR010707 Protein of unknown function DUF1285 RPE_RS23155 b24aebf964ab7b85cc2b24f6d1e430ab 223 Pfam PF03006 Haemolysin-III related 24 212 1.4E-19 T 23-04-2016 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 RPE_RS23155 b24aebf964ab7b85cc2b24f6d1e430ab 223 PANTHER PTHR20855 19 219 7.1E-32 T 23-04-2016 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 RPE_RS23155 b24aebf964ab7b85cc2b24f6d1e430ab 223 PANTHER PTHR20855:SF3 19 219 7.1E-32 T 23-04-2016 IPR005744 Hly-III GO:0016021|GO:0019835 RPE_RS13685 c515c459da8b0be1e3c89a7c714cb630 112 PIRSF PIRSF028440 2 109 8.3E-38 T 23-04-2016 IPR014546 Uncharacterised conserved protein, lipid A biosynthesis RPE_RS13685 c515c459da8b0be1e3c89a7c714cb630 112 ProDom PD339292 LIPID A SYNTHASE LIPID-A-DISACCHARIDE TRANSFERASE GLYCOSYLTRANSFERASE BIOSYNTHESIS N-TERMINAL BIOSYNTHESIS SYNTHESIS 22 99 8.0E-39 T 23-04-2016 IPR011499 Lipid A biosynthesis GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 RPE_RS13685 c515c459da8b0be1e3c89a7c714cb630 112 Pfam PF07578 Lipid A Biosynthesis N-terminal domain 28 97 2.1E-30 T 23-04-2016 IPR011499 Lipid A biosynthesis GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 RPE_RS13685 c515c459da8b0be1e3c89a7c714cb630 112 SMART SM01259 27 98 1.2E-42 T 23-04-2016 IPR011499 Lipid A biosynthesis GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 RPE_RS08575 4ea6e94f5aa20be20456a373806e8514 330 Pfam PF01636 Phosphotransferase enzyme family 26 259 1.4E-34 T 23-04-2016 IPR002575 Aminoglycoside phosphotransferase RPE_RS08575 4ea6e94f5aa20be20456a373806e8514 330 SUPERFAMILY SSF56112 6 316 6.38E-43 T 23-04-2016 IPR011009 Protein kinase-like domain RPE_RS08575 4ea6e94f5aa20be20456a373806e8514 330 Gene3D G3DSA:3.90.1200.10 124 306 6.5E-26 T 23-04-2016 RPE_RS08575 4ea6e94f5aa20be20456a373806e8514 330 PANTHER PTHR21310 70 324 2.2E-23 T 23-04-2016 RPE_RS08575 4ea6e94f5aa20be20456a373806e8514 330 PANTHER PTHR21310:SF14 70 324 2.2E-23 T 23-04-2016 RPE_RS05865 a3fee577bfbe5426d91384dee4ce420f 106 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 3 106 14.113 T 23-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RPE_RS05865 a3fee577bfbe5426d91384dee4ce420f 106 PANTHER PTHR34653 29 106 2.7E-14 T 23-04-2016 RPE_RS05865 a3fee577bfbe5426d91384dee4ce420f 106 Pfam PF02049 Flagellar hook-basal body complex protein FliE 23 106 6.1E-17 T 23-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RPE_RS14970 68836ce2e01f8db5eeef3687a157cbd4 400 Gene3D G3DSA:3.90.1150.10 267 397 3.6E-36 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS14970 68836ce2e01f8db5eeef3687a157cbd4 400 PANTHER PTHR11751 20 396 1.5E-194 T 23-04-2016 RPE_RS14970 68836ce2e01f8db5eeef3687a157cbd4 400 PANTHER PTHR11751:SF401 20 396 1.5E-194 T 23-04-2016 RPE_RS14970 68836ce2e01f8db5eeef3687a157cbd4 400 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 176 200 5.5E-11 T 23-04-2016 RPE_RS14970 68836ce2e01f8db5eeef3687a157cbd4 400 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 128 149 5.5E-11 T 23-04-2016 RPE_RS14970 68836ce2e01f8db5eeef3687a157cbd4 400 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 106 126 5.5E-11 T 23-04-2016 RPE_RS14970 68836ce2e01f8db5eeef3687a157cbd4 400 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 212 235 5.5E-11 T 23-04-2016 RPE_RS14970 68836ce2e01f8db5eeef3687a157cbd4 400 Gene3D G3DSA:3.40.640.10 59 266 1.8E-59 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS14970 68836ce2e01f8db5eeef3687a157cbd4 400 SUPERFAMILY SSF53383 22 396 2.02E-96 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS14970 68836ce2e01f8db5eeef3687a157cbd4 400 Pfam PF00155 Aminotransferase class I and II 59 392 2.8E-50 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RPE_RS08225 97915f12be8abb684dab6a026b651d78 263 SUPERFAMILY SSF52777 3 143 9.27E-19 T 23-04-2016 RPE_RS08225 97915f12be8abb684dab6a026b651d78 263 SUPERFAMILY SSF52777 171 235 9.27E-19 T 23-04-2016 RPE_RS08225 97915f12be8abb684dab6a026b651d78 263 Gene3D G3DSA:3.30.559.10 8 235 1.4E-10 T 23-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain RPE_RS17760 8d8eea87bb4da86c315386e4aa88c4ac 259 PANTHER PTHR21013:SF11 27 254 6.3E-107 T 23-04-2016 RPE_RS17760 8d8eea87bb4da86c315386e4aa88c4ac 259 PANTHER PTHR21013 27 254 6.3E-107 T 23-04-2016 IPR011419 ATP12, ATPase F1F0-assembly protein GO:0043461 RPE_RS17760 8d8eea87bb4da86c315386e4aa88c4ac 259 Pfam PF07542 ATP12 chaperone protein 30 147 3.4E-32 T 23-04-2016 IPR011419 ATP12, ATPase F1F0-assembly protein GO:0043461 RPE_RS17760 8d8eea87bb4da86c315386e4aa88c4ac 259 Gene3D G3DSA:3.30.2180.10 9 86 5.8E-24 T 23-04-2016 RPE_RS17760 8d8eea87bb4da86c315386e4aa88c4ac 259 SUPERFAMILY SSF160909 2 253 2.62E-84 T 23-04-2016 RPE_RS17760 8d8eea87bb4da86c315386e4aa88c4ac 259 Gene3D G3DSA:1.10.3580.10 89 254 2.8E-51 T 23-04-2016 IPR023335 Orthogonal Bundle domain in ATP12 RPE_RS24100 9d2101b45083e7a44a1bb7bc0abd57b2 262 Pfam PF11064 Protein of unknown function (DUF2865) 82 184 2.0E-29 T 23-04-2016 IPR021293 Protein of unknown function DUF2865 RPE_RS08705 3ee7d3517890d074a47f6ecce3d3cd91 274 SUPERFAMILY SSF52402 1 143 2.43E-12 T 23-04-2016 RPE_RS08705 3ee7d3517890d074a47f6ecce3d3cd91 274 Gene3D G3DSA:3.40.50.620 2 116 6.5E-8 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS08705 3ee7d3517890d074a47f6ecce3d3cd91 274 Gene3D G3DSA:3.40.50.620 136 270 2.8E-15 T 23-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RPE_RS08705 3ee7d3517890d074a47f6ecce3d3cd91 274 SUPERFAMILY SSF52402 151 272 3.43E-16 T 23-04-2016 RPE_RS10065 4b78fd3c2dcec15b38c996271460a935 200 Pfam PF03641 Possible lysine decarboxylase 49 176 2.9E-40 T 23-04-2016 IPR031100 LOG family RPE_RS10065 4b78fd3c2dcec15b38c996271460a935 200 PANTHER PTHR31223 1 185 1.9E-91 T 23-04-2016 RPE_RS10065 4b78fd3c2dcec15b38c996271460a935 200 PANTHER PTHR31223:SF0 1 185 1.9E-91 T 23-04-2016 RPE_RS10065 4b78fd3c2dcec15b38c996271460a935 200 SUPERFAMILY SSF102405 3 179 6.11E-62 T 23-04-2016 RPE_RS10065 4b78fd3c2dcec15b38c996271460a935 200 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 5 177 5.5E-57 T 23-04-2016 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG RPE_RS10065 4b78fd3c2dcec15b38c996271460a935 200 Gene3D G3DSA:3.40.50.450 2 180 3.9E-65 T 23-04-2016 RPE_RS08925 bb012b6adf95ced2b5db620c3b61b070 338 Pfam PF07786 Protein of unknown function (DUF1624) 31 193 1.2E-11 T 23-04-2016 IPR012429 Protein of unknown function DUF1624 KEGG: 00531+2.3.1.78 RPE_RS08925 bb012b6adf95ced2b5db620c3b61b070 338 PANTHER PTHR40407 42 338 8.4E-15 T 23-04-2016 RPE_RS21500 994afae4e8561c7b1b8ff5d496dea87e 372 Pfam PF01435 Peptidase family M48 186 346 1.4E-24 T 23-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RPE_RS21500 994afae4e8561c7b1b8ff5d496dea87e 372 Gene3D G3DSA:3.30.2010.10 172 252 3.4E-15 T 23-04-2016 RPE_RS21500 994afae4e8561c7b1b8ff5d496dea87e 372 PANTHER PTHR22726:SF10 43 346 1.7E-70 T 23-04-2016 RPE_RS21500 994afae4e8561c7b1b8ff5d496dea87e 372 PANTHER PTHR22726 43 346 1.7E-70 T 23-04-2016 RPE_RS09145 ed23b36bbbc7ada83ed0d318dad04408 314 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 9 287 3.0E-98 T 23-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 RPE_RS09145 ed23b36bbbc7ada83ed0d318dad04408 314 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 7 289 38.787 T 23-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 RPE_RS09145 ed23b36bbbc7ada83ed0d318dad04408 314 Pfam PF02401 LytB protein 9 285 6.2E-90 T 23-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 RPE_RS09145 ed23b36bbbc7ada83ed0d318dad04408 314 PANTHER PTHR30426 7 313 3.3E-152 T 23-04-2016 RPE_RS11480 d5c75523f66b3a922fd1460fc2d83679 416 PANTHER PTHR10590 3 415 1.9E-132 T 23-04-2016 IPR008276 Concentrative nucleoside transporter GO:0005337|GO:0016020|GO:1901642 Reactome: REACT_15518|Reactome: REACT_1698 RPE_RS11480 d5c75523f66b3a922fd1460fc2d83679 416 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 208 415 7.2E-63 T 23-04-2016 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: REACT_15518|Reactome: REACT_1698 RPE_RS11480 d5c75523f66b3a922fd1460fc2d83679 416 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 8 81 2.6E-16 T 23-04-2016 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: REACT_15518|Reactome: REACT_1698 RPE_RS19970 78fb19ec4efaf7a62a485b6f75e414ea 409 SUPERFAMILY SSF56349 98 392 5.65E-43 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RPE_RS19970 78fb19ec4efaf7a62a485b6f75e414ea 409 Pfam PF13356 Domain of unknown function (DUF4102) 6 90 1.5E-11 T 23-04-2016 IPR025166 Domain of unknown function DUF4102 RPE_RS19970 78fb19ec4efaf7a62a485b6f75e414ea 409 PANTHER PTHR30629 1 405 2.5E-44 T 23-04-2016 RPE_RS19970 78fb19ec4efaf7a62a485b6f75e414ea 409 Pfam PF00589 Phage integrase family 224 367 1.3E-10 T 23-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RPE_RS19970 78fb19ec4efaf7a62a485b6f75e414ea 409 Gene3D G3DSA:1.10.443.10 202 368 3.6E-19 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 RPE_RS19970 78fb19ec4efaf7a62a485b6f75e414ea 409 PANTHER PTHR30629:SF2 1 405 2.5E-44 T 23-04-2016 RPE_RS19970 78fb19ec4efaf7a62a485b6f75e414ea 409 Gene3D G3DSA:1.10.150.130 98 197 7.6E-12 T 23-04-2016 IPR023109 Integrase/recombinase, N-terminal RPE_RS04355 6258244541fe7b950eebf6e6df38b611 266 Pfam PF03734 L,D-transpeptidase catalytic domain 138 265 5.2E-19 T 23-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 RPE_RS04355 6258244541fe7b950eebf6e6df38b611 266 PANTHER PTHR30582 103 266 6.9E-65 T 23-04-2016 RPE_RS04355 6258244541fe7b950eebf6e6df38b611 266 PANTHER PTHR30582:SF1 103 266 6.9E-65 T 23-04-2016 RPE_RS04355 6258244541fe7b950eebf6e6df38b611 266 Gene3D G3DSA:2.40.440.10 133 265 3.4E-35 T 23-04-2016 RPE_RS04355 6258244541fe7b950eebf6e6df38b611 266 SUPERFAMILY SSF141523 132 266 3.14E-33 T 23-04-2016 RPE_RS20530 21e5dbfc449d5ead0258158b2b57481e 99 Gene3D G3DSA:1.10.3340.10 3 86 6.6E-42 T 23-04-2016 IPR023163 SMc04008-like domain RPE_RS20530 21e5dbfc449d5ead0258158b2b57481e 99 Pfam PF06844 Protein of unknown function (DUF1244) 29 95 2.3E-35 T 23-04-2016 IPR023163 SMc04008-like domain RPE_RS20530 21e5dbfc449d5ead0258158b2b57481e 99 SUPERFAMILY SSF158757 3 78 6.54E-37 T 23-04-2016 IPR023163 SMc04008-like domain RPE_RS23140 ca4ffacf51c7e26e6f07fc7a43bcc3bf 426 Gene3D G3DSA:1.10.630.10 36 405 4.5E-24 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RPE_RS23140 ca4ffacf51c7e26e6f07fc7a43bcc3bf 426 SUPERFAMILY SSF48264 33 396 1.7E-25 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RPE_RS23140 ca4ffacf51c7e26e6f07fc7a43bcc3bf 426 PANTHER PTHR24279 77 424 7.2E-145 T 23-04-2016 RPE_RS23140 ca4ffacf51c7e26e6f07fc7a43bcc3bf 426 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 368 377 - T 23-04-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 RPE_RS23140 ca4ffacf51c7e26e6f07fc7a43bcc3bf 426 Pfam PF00067 Cytochrome P450 276 385 5.0E-6 T 23-04-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 RPE_RS23140 ca4ffacf51c7e26e6f07fc7a43bcc3bf 426 PANTHER PTHR24279:SF67 77 424 7.2E-145 T 23-04-2016 RPE_RS17510 73bc51132ec15f0632338a8e5ee26be4 437 Gene3D G3DSA:3.30.1950.10 33 95 2.4E-17 T 23-04-2016 RPE_RS17510 73bc51132ec15f0632338a8e5ee26be4 437 Pfam PF02563 Polysaccharide biosynthesis/export protein 25 99 1.8E-19 T 23-04-2016 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 RPE_RS17510 73bc51132ec15f0632338a8e5ee26be4 437 Gene3D G3DSA:3.10.560.10 96 158 3.9E-9 T 23-04-2016 RPE_RS17510 73bc51132ec15f0632338a8e5ee26be4 437 Pfam PF10531 SLBB domain 107 138 1.1E-7 T 23-04-2016 IPR019554 Soluble ligand binding domain RPE_RS17510 73bc51132ec15f0632338a8e5ee26be4 437 PANTHER PTHR33619 24 135 3.4E-28 T 23-04-2016 RPE_RS22455 81dffb4d58f9ced0377a993c4e2c5c07 202 SUPERFAMILY SSF46894 136 201 1.87E-13 T 23-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RPE_RS22455 81dffb4d58f9ced0377a993c4e2c5c07 202 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 146 160 3.7E-5 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS22455 81dffb4d58f9ced0377a993c4e2c5c07 202 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 176 3.7E-5 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS22455 81dffb4d58f9ced0377a993c4e2c5c07 202 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 176 188 3.7E-5 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS22455 81dffb4d58f9ced0377a993c4e2c5c07 202 SMART SM00421 143 200 1.1E-10 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS22455 81dffb4d58f9ced0377a993c4e2c5c07 202 Pfam PF00196 Bacterial regulatory proteins, luxR family 145 197 2.0E-8 T 23-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RPE_RS22455 81dffb4d58f9ced0377a993c4e2c5c07 202 Gene3D G3DSA:1.10.10.10 141 202 1.8E-12 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS06570 35cc08bfac4392411929703653936285 168 Pfam PF08547 Complex I intermediate-associated protein 30 (CIA30) 10 149 1.5E-24 T 23-04-2016 IPR013857 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 RPE_RS06570 35cc08bfac4392411929703653936285 168 SUPERFAMILY SSF49785 12 164 1.87E-21 T 23-04-2016 IPR008979 Galactose-binding domain-like RPE_RS15220 88605015f5a82da85c29659872989962 157 TIGRFAM TIGR00086 smpB: SsrA-binding protein 12 153 2.9E-56 T 23-04-2016 IPR000037 SsrA-binding protein GO:0003723 RPE_RS15220 88605015f5a82da85c29659872989962 157 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 12 136 5.0E-58 T 23-04-2016 IPR000037 SsrA-binding protein GO:0003723 RPE_RS15220 88605015f5a82da85c29659872989962 157 ProSitePatterns PS01317 SsrA-binding protein. 30 42 - T 23-04-2016 IPR020081 SsrA-binding protein, conserved site RPE_RS15220 88605015f5a82da85c29659872989962 157 Hamap MF_00023 SsrA-binding protein [smpB]. 1 157 73.818 T 23-04-2016 IPR000037 SsrA-binding protein GO:0003723 RPE_RS15220 88605015f5a82da85c29659872989962 157 PANTHER PTHR30308 1 155 4.3E-80 T 23-04-2016 RPE_RS15220 88605015f5a82da85c29659872989962 157 Pfam PF01668 SmpB protein 11 75 6.0E-29 T 23-04-2016 IPR000037 SsrA-binding protein GO:0003723 RPE_RS15220 88605015f5a82da85c29659872989962 157 SUPERFAMILY SSF74982 5 136 2.22E-51 T 23-04-2016 IPR023620 Small protein B RPE_RS15220 88605015f5a82da85c29659872989962 157 PANTHER PTHR30308:SF2 1 155 4.3E-80 T 23-04-2016 RPE_RS15220 88605015f5a82da85c29659872989962 157 Gene3D G3DSA:2.40.280.10 10 131 4.5E-53 T 23-04-2016 IPR023620 Small protein B RPE_RS04715 3df861d6e4df595054941c3ae3d21097 132 PANTHER PTHR36934 3 128 3.1E-33 T 23-04-2016 RPE_RS04715 3df861d6e4df595054941c3ae3d21097 132 Pfam PF03061 Thioesterase superfamily 45 108 1.3E-6 T 23-04-2016 IPR006683 Thioesterase domain RPE_RS04715 3df861d6e4df595054941c3ae3d21097 132 SUPERFAMILY SSF54637 5 128 2.6E-40 T 23-04-2016 IPR029069 HotDog domain RPE_RS04715 3df861d6e4df595054941c3ae3d21097 132 PIRSF PIRSF014972 4 130 8.8E-39 T 23-04-2016 IPR025540 Fluoroacetyl-CoA thioesterase RPE_RS04715 3df861d6e4df595054941c3ae3d21097 132 Gene3D G3DSA:3.10.129.10 7 128 8.4E-33 T 23-04-2016 IPR029069 HotDog domain RPE_RS11030 d8c171ba797d2aef36841fcfa1d773c3 446 Gene3D G3DSA:1.20.1250.20 24 226 5.7E-36 T 23-04-2016 RPE_RS11030 d8c171ba797d2aef36841fcfa1d773c3 446 PANTHER PTHR11662 7 438 1.2E-140 T 23-04-2016 RPE_RS11030 d8c171ba797d2aef36841fcfa1d773c3 446 Gene3D G3DSA:1.20.1250.20 248 432 1.8E-20 T 23-04-2016 RPE_RS11030 d8c171ba797d2aef36841fcfa1d773c3 446 Pfam PF07690 Major Facilitator Superfamily 34 396 2.1E-39 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RPE_RS11030 d8c171ba797d2aef36841fcfa1d773c3 446 PANTHER PTHR11662:SF3 7 438 1.2E-140 T 23-04-2016 RPE_RS11030 d8c171ba797d2aef36841fcfa1d773c3 446 SUPERFAMILY SSF103473 17 431 1.7E-81 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS09675 32253921bd7cc436adb2daf642908987 265 SUPERFAMILY SSF53955 32 211 2.81E-32 T 23-04-2016 IPR023346 Lysozyme-like domain RPE_RS09675 32253921bd7cc436adb2daf642908987 265 Gene3D G3DSA:3.30.20.10 111 153 1.2E-6 T 23-04-2016 RPE_RS09675 32253921bd7cc436adb2daf642908987 265 PANTHER PTHR34408 15 66 1.4E-20 T 23-04-2016 RPE_RS09675 32253921bd7cc436adb2daf642908987 265 PANTHER PTHR34408 93 209 1.4E-20 T 23-04-2016 RPE_RS24715 56ef09713eeb205310b94a7a6ce2dbce 218 Gene3D G3DSA:3.30.1150.10 109 192 4.4E-4 T 23-04-2016 RPE_RS24715 56ef09713eeb205310b94a7a6ce2dbce 218 Pfam PF07660 Secretin and TonB N terminus short domain 50 99 7.6E-8 T 23-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 RPE_RS24715 56ef09713eeb205310b94a7a6ce2dbce 218 SUPERFAMILY SSF74653 113 196 3.66E-7 T 23-04-2016 RPE_RS24715 56ef09713eeb205310b94a7a6ce2dbce 218 SMART SM00965 49 100 1.2E-11 T 23-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 RPE_RS01535 2fffa0d06fa917fa237d4cf0697d4de4 271 PANTHER PTHR23291 1 68 5.4E-82 T 23-04-2016 IPR006214 Bax inhibitor 1-related RPE_RS01535 2fffa0d06fa917fa237d4cf0697d4de4 271 PANTHER PTHR23291 91 271 5.4E-82 T 23-04-2016 IPR006214 Bax inhibitor 1-related RPE_RS01535 2fffa0d06fa917fa237d4cf0697d4de4 271 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 29 267 5.2E-59 T 23-04-2016 RPE_RS01535 2fffa0d06fa917fa237d4cf0697d4de4 271 PANTHER PTHR23291:SF42 1 68 5.4E-82 T 23-04-2016 RPE_RS01535 2fffa0d06fa917fa237d4cf0697d4de4 271 PANTHER PTHR23291:SF42 91 271 5.4E-82 T 23-04-2016 RPE_RS08090 ee1c6d3a914844698044cf8960ba4735 265 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 15 248 1.6E-66 T 23-04-2016 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 RPE_RS08090 ee1c6d3a914844698044cf8960ba4735 265 Gene3D G3DSA:3.30.200.20 17 103 1.9E-38 T 23-04-2016 RPE_RS08090 ee1c6d3a914844698044cf8960ba4735 265 Pfam PF01259 SAICAR synthetase 16 245 5.1E-62 T 23-04-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 RPE_RS08090 ee1c6d3a914844698044cf8960ba4735 265 PANTHER PTHR11609:SF2 13 250 2.0E-119 T 23-04-2016 RPE_RS08090 ee1c6d3a914844698044cf8960ba4735 265 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 14 248 32.514 T 23-04-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 RPE_RS08090 ee1c6d3a914844698044cf8960ba4735 265 SUPERFAMILY SSF56104 9 246 1.9E-79 T 23-04-2016 RPE_RS08090 ee1c6d3a914844698044cf8960ba4735 265 PANTHER PTHR11609 13 250 2.0E-119 T 23-04-2016 RPE_RS08090 ee1c6d3a914844698044cf8960ba4735 265 ProSitePatterns PS01057 SAICAR synthetase signature 1. 96 110 - T 23-04-2016 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 RPE_RS08090 ee1c6d3a914844698044cf8960ba4735 265 Gene3D G3DSA:3.30.470.20 104 233 4.3E-51 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RPE_RS09010 a1674abd515a05c03aa0e81bc7b8c601 348 SMART SM00471 180 316 1.1E-12 T 23-04-2016 IPR003607 HD/PDEase domain RPE_RS09010 a1674abd515a05c03aa0e81bc7b8c601 348 Pfam PF01966 HD domain 184 306 7.8E-19 T 23-04-2016 IPR006674 HD domain RPE_RS09010 a1674abd515a05c03aa0e81bc7b8c601 348 TIGRFAM TIGR00277 HDIG: HDIG domain 180 275 1.9E-9 T 23-04-2016 IPR006675 HDIG domain RPE_RS09010 a1674abd515a05c03aa0e81bc7b8c601 348 SUPERFAMILY SSF109604 171 333 4.94E-31 T 23-04-2016 RPE_RS09010 a1674abd515a05c03aa0e81bc7b8c601 348 Gene3D G3DSA:1.10.3210.10 179 315 4.0E-21 T 23-04-2016 IPR006674 HD domain RPE_RS17755 5ad9eb038bdfb3f4a778dc85e7e049c6 578 Pfam PF02120 Flagellar hook-length control protein FliK 488 564 8.2E-18 T 23-04-2016 IPR021136 Flagellar hook-length control protein-like, C-terminal RPE_RS13115 702439c88dca8430d7f1705bba6a15fc 98 Pfam PF16826 Domain of unknown function (DUF5076) 6 87 6.2E-30 T 23-04-2016 IPR031796 Protein of unknown function DUF5076 RPE_RS22925 0294e7fbb41f13aa264cb13beb5dc520 361 ProSitePatterns PS00788 Chorismate synthase signature 2. 130 146 - T 23-04-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RPE_RS22925 0294e7fbb41f13aa264cb13beb5dc520 361 ProSitePatterns PS00789 Chorismate synthase signature 3. 328 344 - T 23-04-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RPE_RS22925 0294e7fbb41f13aa264cb13beb5dc520 361 Pfam PF01264 Chorismate synthase 10 353 1.6E-135 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RPE_RS22925 0294e7fbb41f13aa264cb13beb5dc520 361 TIGRFAM TIGR00033 aroC: chorismate synthase 10 358 3.5E-132 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RPE_RS22925 0294e7fbb41f13aa264cb13beb5dc520 361 Hamap MF_00300 Chorismate synthase [aroC]. 10 361 36.719 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RPE_RS22925 0294e7fbb41f13aa264cb13beb5dc520 361 SUPERFAMILY SSF103263 4 359 5.49E-141 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RPE_RS22925 0294e7fbb41f13aa264cb13beb5dc520 361 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 23-04-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RPE_RS22925 0294e7fbb41f13aa264cb13beb5dc520 361 PANTHER PTHR21085 2 359 6.1E-198 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RPE_RS22925 0294e7fbb41f13aa264cb13beb5dc520 361 PIRSF PIRSF001456 3 360 1.7E-137 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RPE_RS22925 0294e7fbb41f13aa264cb13beb5dc520 361 Gene3D G3DSA:3.60.150.10 9 359 6.4E-155 T 23-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 RPE_RS23380 ca53c30349cff2c26657bc4be22c47db 106 Gene3D G3DSA:3.30.750.24 11 89 7.8E-9 T 23-04-2016 IPR002645 STAS domain RPE_RS23380 ca53c30349cff2c26657bc4be22c47db 106 Pfam PF13466 STAS domain 11 89 6.7E-15 T 23-04-2016 IPR002645 STAS domain RPE_RS23380 ca53c30349cff2c26657bc4be22c47db 106 PANTHER PTHR35849:SF2 10 88 5.1E-18 T 23-04-2016 RPE_RS23380 ca53c30349cff2c26657bc4be22c47db 106 SUPERFAMILY SSF52091 11 89 1.49E-8 T 23-04-2016 IPR002645 STAS domain RPE_RS23380 ca53c30349cff2c26657bc4be22c47db 106 PANTHER PTHR35849 10 88 5.1E-18 T 23-04-2016 RPE_RS00405 c7053f7de07bd7e290602e4a0d9a0ef8 254 Gene3D G3DSA:1.20.910.10 69 208 1.4E-7 T 23-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 RPE_RS00405 c7053f7de07bd7e290602e4a0d9a0ef8 254 Pfam PF14518 Iron-containing redox enzyme 85 209 9.0E-8 T 23-04-2016 IPR028201 PqqC-like protein RPE_RS00405 c7053f7de07bd7e290602e4a0d9a0ef8 254 SUPERFAMILY SSF48613 51 190 7.31E-13 T 23-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 RPE_RS04835 4680445610402cde59626e8545969429 264 PANTHER PTHR30572 34 250 1.1E-52 T 23-04-2016 RPE_RS04835 4680445610402cde59626e8545969429 264 PANTHER PTHR30572:SF11 34 250 1.1E-52 T 23-04-2016 RPE_RS04835 4680445610402cde59626e8545969429 264 TIGRFAM TIGR02797 exbB: tonB-system energizer ExbB 42 250 2.0E-95 T 23-04-2016 IPR014164 TonB-system energizer ExbB type-1 GO:0006810|GO:0016020 RPE_RS04835 4680445610402cde59626e8545969429 264 Pfam PF01618 MotA/TolQ/ExbB proton channel family 115 231 1.3E-34 T 23-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 RPE_RS05245 7a228b5560a693be457ed2407c60a216 212 Pfam PF08241 Methyltransferase domain 48 144 2.8E-21 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 RPE_RS05245 7a228b5560a693be457ed2407c60a216 212 PANTHER PTHR10108 10 183 4.9E-27 T 23-04-2016 RPE_RS05245 7a228b5560a693be457ed2407c60a216 212 Gene3D G3DSA:3.40.50.150 10 188 6.0E-31 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS05245 7a228b5560a693be457ed2407c60a216 212 PANTHER PTHR10108:SF805 10 183 4.9E-27 T 23-04-2016 RPE_RS05245 7a228b5560a693be457ed2407c60a216 212 SUPERFAMILY SSF53335 11 203 2.76E-32 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS06385 f1c087baac876b303a63c1aeaeee16b5 264 PANTHER PTHR24220 6 259 3.2E-113 T 23-04-2016 RPE_RS06385 f1c087baac876b303a63c1aeaeee16b5 264 Pfam PF00005 ABC transporter 24 166 1.5E-31 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS06385 f1c087baac876b303a63c1aeaeee16b5 264 PANTHER PTHR24220:SF361 6 259 3.2E-113 T 23-04-2016 RPE_RS06385 f1c087baac876b303a63c1aeaeee16b5 264 SUPERFAMILY SSF52540 5 226 4.38E-67 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS06385 f1c087baac876b303a63c1aeaeee16b5 264 SMART SM00382 33 216 2.8E-15 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS06385 f1c087baac876b303a63c1aeaeee16b5 264 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 23-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RPE_RS06385 f1c087baac876b303a63c1aeaeee16b5 264 Gene3D G3DSA:3.40.50.300 2 222 4.2E-62 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS06385 f1c087baac876b303a63c1aeaeee16b5 264 TIGRFAM TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D 24 254 6.8E-102 T 23-04-2016 IPR005890 Nitrate transport ATP-binding subunit C/D GO:0015112|GO:0015706|GO:0016020 RPE_RS24115 c8ee1a375c06df45551bcd8c4fba1cdf 277 SUPERFAMILY SSF54637 50 118 4.92E-5 T 23-04-2016 IPR029069 HotDog domain RPE_RS24115 c8ee1a375c06df45551bcd8c4fba1cdf 277 Gene3D G3DSA:3.10.129.10 65 117 2.7E-4 T 23-04-2016 IPR029069 HotDog domain RPE_RS24115 c8ee1a375c06df45551bcd8c4fba1cdf 277 Pfam PF13622 Thioesterase-like superfamily 39 274 4.6E-34 T 23-04-2016 RPE_RS24115 c8ee1a375c06df45551bcd8c4fba1cdf 277 SUPERFAMILY SSF54637 132 275 5.89E-14 T 23-04-2016 IPR029069 HotDog domain RPE_RS16910 fa681e20afa9ee073b3fb6ef100db929 197 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 4 195 2.1E-53 T 23-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 RPE_RS16910 fa681e20afa9ee073b3fb6ef100db929 197 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 8 194 20.423 T 23-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 RPE_RS16910 fa681e20afa9ee073b3fb6ef100db929 197 PANTHER PTHR30309:SF0 1 196 1.5E-71 T 23-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 RPE_RS16910 fa681e20afa9ee073b3fb6ef100db929 197 SMART SM01207 11 186 2.7E-85 T 23-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 RPE_RS16910 fa681e20afa9ee073b3fb6ef100db929 197 PANTHER PTHR30309 1 196 1.5E-71 T 23-04-2016 RPE_RS16910 fa681e20afa9ee073b3fb6ef100db929 197 Pfam PF02660 Glycerol-3-phosphate acyltransferase 12 185 5.0E-51 T 23-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 RPE_RS15845 cb64ef1bfaf856b1462e2dcd5b23df3d 271 PANTHER PTHR16255 44 266 2.0E-34 T 23-04-2016 RPE_RS15845 cb64ef1bfaf856b1462e2dcd5b23df3d 271 Pfam PF02582 Uncharacterised ACR, YagE family COG1723 51 220 7.7E-31 T 23-04-2016 IPR003734 Domain of unknown function DUF155 RPE_RS23870 a1e3fb485d66b901efc07657d956501f 181 Pfam PF00430 ATP synthase B/B' CF(0) 33 162 1.2E-20 T 23-04-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 RPE_RS23870 a1e3fb485d66b901efc07657d956501f 181 Hamap MF_01398 ATP synthase subunit b [atpF]. 24 179 9.194 T 23-04-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 RPE_RS13680 ff1f84f4c4ddee3526988f1c5df3d9a7 247 PANTHER PTHR10859:SF49 9 235 4.3E-74 T 23-04-2016 RPE_RS13680 ff1f84f4c4ddee3526988f1c5df3d9a7 247 PANTHER PTHR10859 9 235 4.3E-74 T 23-04-2016 RPE_RS13680 ff1f84f4c4ddee3526988f1c5df3d9a7 247 Pfam PF00535 Glycosyl transferase family 2 12 173 1.2E-25 T 23-04-2016 IPR001173 Glycosyltransferase 2-like RPE_RS13680 ff1f84f4c4ddee3526988f1c5df3d9a7 247 Gene3D G3DSA:3.90.550.10 8 180 6.7E-25 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS13680 ff1f84f4c4ddee3526988f1c5df3d9a7 247 SUPERFAMILY SSF53448 8 233 5.77E-43 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS18795 d8e6a9b9a2615ce2908924ccc58e38b8 460 Gene3D G3DSA:3.40.630.10 140 458 2.5E-111 T 23-04-2016 RPE_RS18795 d8e6a9b9a2615ce2908924ccc58e38b8 460 PRINTS PR00481 Cytosol aminopeptidase signature 304 324 2.4E-42 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RPE_RS18795 d8e6a9b9a2615ce2908924ccc58e38b8 460 PRINTS PR00481 Cytosol aminopeptidase signature 282 303 2.4E-42 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RPE_RS18795 d8e6a9b9a2615ce2908924ccc58e38b8 460 PRINTS PR00481 Cytosol aminopeptidase signature 245 266 2.4E-42 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RPE_RS18795 d8e6a9b9a2615ce2908924ccc58e38b8 460 PRINTS PR00481 Cytosol aminopeptidase signature 332 347 2.4E-42 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RPE_RS18795 d8e6a9b9a2615ce2908924ccc58e38b8 460 PRINTS PR00481 Cytosol aminopeptidase signature 223 240 2.4E-42 T 23-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RPE_RS18795 d8e6a9b9a2615ce2908924ccc58e38b8 460 SUPERFAMILY SSF53187 143 458 1.22E-104 T 23-04-2016 RPE_RS18795 d8e6a9b9a2615ce2908924ccc58e38b8 460 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 149 448 1.1E-97 T 23-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RPE_RS18795 d8e6a9b9a2615ce2908924ccc58e38b8 460 PANTHER PTHR11963 87 460 7.5E-142 T 23-04-2016 RPE_RS18795 d8e6a9b9a2615ce2908924ccc58e38b8 460 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 308 315 - T 23-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RPE_RS18795 d8e6a9b9a2615ce2908924ccc58e38b8 460 PANTHER PTHR11963:SF13 87 460 7.5E-142 T 23-04-2016 RPE_RS18315 02a0cb7c5f4280f18266cbb275251926 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 45 60 8.47E-5 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RPE_RS18315 02a0cb7c5f4280f18266cbb275251926 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 10 25 8.47E-5 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RPE_RS18315 02a0cb7c5f4280f18266cbb275251926 118 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 60 75 8.47E-5 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RPE_RS18315 02a0cb7c5f4280f18266cbb275251926 118 Pfam PF12840 Helix-turn-helix domain 8 69 1.8E-13 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS18315 02a0cb7c5f4280f18266cbb275251926 118 PANTHER PTHR33154 6 101 5.0E-21 T 23-04-2016 RPE_RS18315 02a0cb7c5f4280f18266cbb275251926 118 Gene3D G3DSA:1.10.10.10 2 100 1.1E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS18315 02a0cb7c5f4280f18266cbb275251926 118 SMART SM00418 8 89 6.9E-12 T 23-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RPE_RS18315 02a0cb7c5f4280f18266cbb275251926 118 SUPERFAMILY SSF46785 3 92 2.19E-19 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS13530 5c9f16f4a8ec069061265817f6be0af9 175 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 1.7E-14 T 23-04-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 RPE_RS13530 5c9f16f4a8ec069061265817f6be0af9 175 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 1.7E-14 T 23-04-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 RPE_RS13530 5c9f16f4a8ec069061265817f6be0af9 175 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 1.7E-14 T 23-04-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 RPE_RS13530 5c9f16f4a8ec069061265817f6be0af9 175 Pfam PF02416 mttA/Hcf106 family 4 37 7.0E-4 T 23-04-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 RPE_RS13530 5c9f16f4a8ec069061265817f6be0af9 175 PANTHER PTHR33162 1 169 8.0E-38 T 23-04-2016 RPE_RS13530 5c9f16f4a8ec069061265817f6be0af9 175 PANTHER PTHR33162:SF1 1 169 8.0E-38 T 23-04-2016 RPE_RS13530 5c9f16f4a8ec069061265817f6be0af9 175 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 70 1.7E-22 T 23-04-2016 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 RPE_RS13530 5c9f16f4a8ec069061265817f6be0af9 175 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 174 16.125 T 23-04-2016 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 RPE_RS00525 d21d1d9bdd39db44ed3134ecbd974589 270 Gene3D G3DSA:1.10.3720.10 56 249 4.0E-16 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS00525 d21d1d9bdd39db44ed3134ecbd974589 270 SUPERFAMILY SSF161098 60 245 3.01E-22 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS00525 d21d1d9bdd39db44ed3134ecbd974589 270 PANTHER PTHR30151 13 262 7.1E-98 T 23-04-2016 RPE_RS00525 d21d1d9bdd39db44ed3134ecbd974589 270 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 251 3.8E-19 T 23-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RPE_RS00525 d21d1d9bdd39db44ed3134ecbd974589 270 PANTHER PTHR30151:SF9 13 262 7.1E-98 T 23-04-2016 RPE_RS04850 6fa68a99efa9acdcc1c9abe776c50a71 91 Pfam PF06627 Protein of unknown function (DUF1153) 7 90 6.1E-41 T 23-04-2016 IPR009534 Protein of unknown function DUF1153 RPE_RS04850 6fa68a99efa9acdcc1c9abe776c50a71 91 SUPERFAMILY SSF48295 12 91 3.66E-19 T 23-04-2016 IPR010921 Trp repressor/replication initiator GO:0043565 RPE_RS04850 6fa68a99efa9acdcc1c9abe776c50a71 91 Gene3D G3DSA:1.10.10.10 10 91 1.8E-37 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS11445 0b3a6aa53aa7805e62598af920c43c79 95 SUPERFAMILY SSF82771 1 89 1.7E-18 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily RPE_RS11445 0b3a6aa53aa7805e62598af920c43c79 95 SMART SM00465 2 80 0.003 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily RPE_RS11445 0b3a6aa53aa7805e62598af920c43c79 95 PANTHER PTHR34477:SF2 1 93 1.3E-54 T 23-04-2016 RPE_RS11445 0b3a6aa53aa7805e62598af920c43c79 95 PANTHER PTHR34477 1 93 1.3E-54 T 23-04-2016 RPE_RS11445 0b3a6aa53aa7805e62598af920c43c79 95 Pfam PF01541 GIY-YIG catalytic domain 3 75 1.7E-11 T 23-04-2016 IPR000305 GIY-YIG nuclease superfamily RPE_RS19475 ff2fb8acdf81d9b51dcc9aaeb5f768c9 188 SUPERFAMILY SSF81342 18 185 8.63E-36 T 23-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 RPE_RS19475 ff2fb8acdf81d9b51dcc9aaeb5f768c9 188 Pfam PF01292 Prokaryotic cytochrome b561 21 182 2.5E-24 T 23-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 RPE_RS19475 ff2fb8acdf81d9b51dcc9aaeb5f768c9 188 Gene3D G3DSA:1.20.950.20 49 183 2.4E-8 T 23-04-2016 RPE_RS10745 5f1887dfb02565942c05b522071615b6 87 Pfam PF13467 Ribbon-helix-helix domain 6 68 4.4E-23 T 23-04-2016 IPR027373 Ribbon-helix-helix domain RPE_RS04605 7074666f13787f59806b214deee87b4a 518 SUPERFAMILY SSF55681 17 219 3.78E-70 T 23-04-2016 RPE_RS04605 7074666f13787f59806b214deee87b4a 518 SUPERFAMILY SSF55681 246 382 3.78E-70 T 23-04-2016 RPE_RS04605 7074666f13787f59806b214deee87b4a 518 PANTHER PTHR11476:SF1 490 514 2.5E-170 T 23-04-2016 RPE_RS04605 7074666f13787f59806b214deee87b4a 518 PANTHER PTHR11476:SF1 236 470 2.5E-170 T 23-04-2016 RPE_RS04605 7074666f13787f59806b214deee87b4a 518 PANTHER PTHR11476:SF1 8 220 2.5E-170 T 23-04-2016 RPE_RS04605 7074666f13787f59806b214deee87b4a 518 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 18 474 9.5E-112 T 23-04-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21|Reactome: REACT_71 RPE_RS04605 7074666f13787f59806b214deee87b4a 518 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 14 508 25.071 T 23-04-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21|Reactome: REACT_71 RPE_RS04605 7074666f13787f59806b214deee87b4a 518 SUPERFAMILY SSF52954 397 475 7.2E-12 T 23-04-2016 IPR004154 Anticodon-binding RPE_RS04605 7074666f13787f59806b214deee87b4a 518 PANTHER PTHR11476 490 514 2.5E-170 T 23-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 RPE_RS04605 7074666f13787f59806b214deee87b4a 518 PANTHER PTHR11476 236 470 2.5E-170 T 23-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 RPE_RS04605 7074666f13787f59806b214deee87b4a 518 PANTHER PTHR11476 8 220 2.5E-170 T 23-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 RPE_RS04605 7074666f13787f59806b214deee87b4a 518 Gene3D G3DSA:3.30.930.10 287 382 1.9E-81 T 23-04-2016 RPE_RS04605 7074666f13787f59806b214deee87b4a 518 Gene3D G3DSA:3.30.930.10 17 212 1.9E-81 T 23-04-2016 RPE_RS04605 7074666f13787f59806b214deee87b4a 518 Pfam PF13393 Histidyl-tRNA synthetase 21 195 1.4E-26 T 23-04-2016 RPE_RS04605 7074666f13787f59806b214deee87b4a 518 Pfam PF13393 Histidyl-tRNA synthetase 287 378 1.5E-12 T 23-04-2016 RPE_RS04605 7074666f13787f59806b214deee87b4a 518 PIRSF PIRSF001549 12 491 6.7E-116 T 23-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 RPE_RS04605 7074666f13787f59806b214deee87b4a 518 Gene3D G3DSA:3.40.50.800 396 508 1.4E-18 T 23-04-2016 IPR004154 Anticodon-binding RPE_RS11845 f398eb9c1d552573cd6fa0a2dfdcb8e9 186 Gene3D G3DSA:1.25.40.10 76 178 9.4E-14 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS11845 f398eb9c1d552573cd6fa0a2dfdcb8e9 186 Pfam PF13424 Tetratricopeptide repeat 97 161 1.5E-7 T 23-04-2016 RPE_RS11845 f398eb9c1d552573cd6fa0a2dfdcb8e9 186 SMART SM00028 98 131 4.5E-4 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS11845 f398eb9c1d552573cd6fa0a2dfdcb8e9 186 SUPERFAMILY SSF48452 81 177 4.61E-14 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS20485 640edc8e5528c8d038028eeea581da12 50 Gene3D G3DSA:1.20.5.160 17 48 2.1E-7 T 23-04-2016 IPR012422 Cytochrome c oxidase, subunit IV, bacterial aa3 type KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 RPE_RS20485 640edc8e5528c8d038028eeea581da12 50 SUPERFAMILY SSF81469 12 49 5.89E-13 T 23-04-2016 IPR012422 Cytochrome c oxidase, subunit IV, bacterial aa3 type KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 RPE_RS20485 640edc8e5528c8d038028eeea581da12 50 Pfam PF07835 Bacterial aa3 type cytochrome c oxidase subunit IV 4 49 1.9E-20 T 23-04-2016 IPR012422 Cytochrome c oxidase, subunit IV, bacterial aa3 type KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 RPE_RS07655 f9b4c1fbdb03a49ded3425f81f4ffe3f 887 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 120 1.4E-8 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RPE_RS07655 f9b4c1fbdb03a49ded3425f81f4ffe3f 887 Pfam PF07482 Domain of Unknown Function (DUF1522) 488 594 5.4E-39 T 23-04-2016 IPR011087 Domain of unknown function DUF1522 RPE_RS07655 f9b4c1fbdb03a49ded3425f81f4ffe3f 887 Pfam PF07482 Domain of Unknown Function (DUF1522) 339 452 9.9E-37 T 23-04-2016 IPR011087 Domain of unknown function DUF1522 RPE_RS07655 f9b4c1fbdb03a49ded3425f81f4ffe3f 887 SUPERFAMILY SSF64518 1 359 7.72E-7 T 23-04-2016 RPE_RS07655 f9b4c1fbdb03a49ded3425f81f4ffe3f 887 SUPERFAMILY SSF64518 399 440 7.72E-7 T 23-04-2016 RPE_RS07655 f9b4c1fbdb03a49ded3425f81f4ffe3f 887 SUPERFAMILY SSF64518 560 887 1.44E-27 T 23-04-2016 RPE_RS07655 f9b4c1fbdb03a49ded3425f81f4ffe3f 887 Pfam PF00700 Bacterial flagellin C-terminal helical region 802 886 1.5E-5 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RPE_RS02175 a242333de43311fb74e79bd9c3e7288d 511 Pfam PF14362 Domain of unknown function (DUF4407) 17 420 3.3E-20 T 23-04-2016 IPR025519 Protein of unknown function DUF4407 RPE_RS01265 13fc00d7e9c662196920fc7911fb8c00 536 PANTHER PTHR11559 1 534 7.9E-144 T 23-04-2016 RPE_RS01265 13fc00d7e9c662196920fc7911fb8c00 536 SUPERFAMILY SSF53474 32 532 4.33E-119 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS01265 13fc00d7e9c662196920fc7911fb8c00 536 ProSitePatterns PS00122 Carboxylesterases type-B serine active site. 200 215 - T 23-04-2016 IPR019826 Carboxylesterase type B, active site RPE_RS01265 13fc00d7e9c662196920fc7911fb8c00 536 Gene3D G3DSA:3.40.50.1820 25 533 1.3E-140 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS01265 13fc00d7e9c662196920fc7911fb8c00 536 Pfam PF00135 Carboxylesterase family 33 526 2.7E-111 T 23-04-2016 IPR002018 Carboxylesterase, type B RPE_RS09480 e98f49da2649dfc06c6a0db36cf01cfe 561 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 399 426 2.1E-22 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS09480 e98f49da2649dfc06c6a0db36cf01cfe 561 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 3 28 2.1E-22 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS09480 e98f49da2649dfc06c6a0db36cf01cfe 561 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 476 505 2.1E-22 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS09480 e98f49da2649dfc06c6a0db36cf01cfe 561 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 428 457 2.1E-22 T 23-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 RPE_RS09480 e98f49da2649dfc06c6a0db36cf01cfe 561 PANTHER PTHR32089:SF40 115 245 3.1E-183 T 23-04-2016 RPE_RS09480 e98f49da2649dfc06c6a0db36cf01cfe 561 PANTHER PTHR32089:SF40 279 558 3.1E-183 T 23-04-2016 RPE_RS09480 e98f49da2649dfc06c6a0db36cf01cfe 561 Gene3D G3DSA:1.10.287.950 321 525 1.8E-49 T 23-04-2016 RPE_RS09480 e98f49da2649dfc06c6a0db36cf01cfe 561 SUPERFAMILY SSF58104 274 554 3.66E-65 T 23-04-2016 RPE_RS09480 e98f49da2649dfc06c6a0db36cf01cfe 561 SMART SM00283 301 555 3.0E-54 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS09480 e98f49da2649dfc06c6a0db36cf01cfe 561 PANTHER PTHR32089 115 245 3.1E-183 T 23-04-2016 RPE_RS09480 e98f49da2649dfc06c6a0db36cf01cfe 561 PANTHER PTHR32089 279 558 3.1E-183 T 23-04-2016 RPE_RS09480 e98f49da2649dfc06c6a0db36cf01cfe 561 Pfam PF00672 HAMP domain 192 252 2.2E-6 T 23-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RPE_RS09480 e98f49da2649dfc06c6a0db36cf01cfe 561 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 359 554 4.8E-38 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS10440 39c04397bc9729cc99e95a65752c7e5f 489 PANTHER PTHR11271:SF33 90 483 4.1E-87 T 23-04-2016 RPE_RS10440 39c04397bc9729cc99e95a65752c7e5f 489 Gene3D G3DSA:2.30.40.10 66 129 2.9E-22 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RPE_RS10440 39c04397bc9729cc99e95a65752c7e5f 489 Gene3D G3DSA:2.30.40.10 443 487 2.9E-22 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RPE_RS10440 39c04397bc9729cc99e95a65752c7e5f 489 PANTHER PTHR11271 90 483 4.1E-87 T 23-04-2016 RPE_RS10440 39c04397bc9729cc99e95a65752c7e5f 489 Gene3D G3DSA:3.20.20.140 130 431 1.1E-76 T 23-04-2016 RPE_RS10440 39c04397bc9729cc99e95a65752c7e5f 489 SUPERFAMILY SSF51556 128 433 4.92E-74 T 23-04-2016 IPR032466 Metal-dependent hydrolase RPE_RS10440 39c04397bc9729cc99e95a65752c7e5f 489 Pfam PF01979 Amidohydrolase family 124 482 2.1E-30 T 23-04-2016 IPR006680 Amidohydrolase-related GO:0016787 RPE_RS10440 39c04397bc9729cc99e95a65752c7e5f 489 SUPERFAMILY SSF51338 414 487 1.73E-13 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RPE_RS10440 39c04397bc9729cc99e95a65752c7e5f 489 SUPERFAMILY SSF51338 71 127 4.75E-8 T 23-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 RPE_RS03190 31c5dfce0f1540f3c13e9f19bf4ef2f6 134 Pfam PF10116 Protein required for attachment to host cells 9 130 1.1E-25 T 23-04-2016 IPR019291 Host attachment protein RPE_RS16730 859f9c066385674ed13bb45e0aee1574 170 SUPERFAMILY SSF51316 10 152 2.82E-9 T 23-04-2016 IPR011057 Mss4-like RPE_RS08830 78f02dc12c68ebce37cc4bf7293d471f 215 Pfam PF11064 Protein of unknown function (DUF2865) 75 177 5.3E-31 T 23-04-2016 IPR021293 Protein of unknown function DUF2865 RPE_RS02225 a17a411bd2ea0d5f35fbbba5f8736ac7 136 Pfam PF09538 Protein of unknown function (FYDLN_acid) 2 117 8.7E-29 T 23-04-2016 IPR012644 Conserved hypothetical protein CHP02300, FYDLN acid RPE_RS02225 a17a411bd2ea0d5f35fbbba5f8736ac7 136 TIGRFAM TIGR02300 FYDLN_acid: TIGR02300 family protein 1 133 1.5E-46 T 23-04-2016 IPR012644 Conserved hypothetical protein CHP02300, FYDLN acid RPE_RS03780 5c5a5ea0f257ebd12f3af882866aa0ac 193 Pfam PF09335 SNARE associated Golgi protein 39 155 4.7E-9 T 23-04-2016 IPR032816 SNARE associated Golgi protein RPE_RS08570 47178baf460001b158e3686fe44c7ab6 265 PANTHER PTHR11941:SF76 2 262 6.4E-116 T 23-04-2016 RPE_RS08570 47178baf460001b158e3686fe44c7ab6 265 SUPERFAMILY SSF52096 1 264 7.4E-76 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS08570 47178baf460001b158e3686fe44c7ab6 265 Gene3D G3DSA:3.90.226.10 3 205 5.4E-58 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS08570 47178baf460001b158e3686fe44c7ab6 265 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 264 1.1E-52 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RPE_RS08570 47178baf460001b158e3686fe44c7ab6 265 PANTHER PTHR11941 2 262 6.4E-116 T 23-04-2016 RPE_RS08570 47178baf460001b158e3686fe44c7ab6 265 Gene3D G3DSA:1.10.12.10 207 265 3.7E-18 T 23-04-2016 IPR014748 Crontonase, C-terminal RPE_RS13175 4dbee7a6fe4281b4b07d3dad82dae706 74 PANTHER PTHR34849 1 63 1.0E-17 T 23-04-2016 RPE_RS13175 4dbee7a6fe4281b4b07d3dad82dae706 74 Gene3D G3DSA:1.10.10.10 5 69 1.1E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS13175 4dbee7a6fe4281b4b07d3dad82dae706 74 Pfam PF04255 Protein of unknown function (DUF433) 6 61 3.4E-23 T 23-04-2016 IPR007367 Protein of unknown function DUF433 RPE_RS13175 4dbee7a6fe4281b4b07d3dad82dae706 74 PANTHER PTHR34849:SF2 1 63 1.0E-17 T 23-04-2016 RPE_RS13175 4dbee7a6fe4281b4b07d3dad82dae706 74 SUPERFAMILY SSF46689 3 70 1.27E-20 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS10605 41eb921f5031a15e7071df751f96e50d 308 Pfam PF07478 D-ala D-ala ligase C-terminus 106 302 2.0E-39 T 23-04-2016 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RPE_RS10605 41eb921f5031a15e7071df751f96e50d 308 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 243 275 - T 23-04-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RPE_RS10605 41eb921f5031a15e7071df751f96e50d 308 Pfam PF01820 D-ala D-ala ligase N-terminus 7 86 1.2E-18 T 23-04-2016 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RPE_RS10605 41eb921f5031a15e7071df751f96e50d 308 SUPERFAMILY SSF56059 99 302 6.4E-43 T 23-04-2016 RPE_RS10605 41eb921f5031a15e7071df751f96e50d 308 SUPERFAMILY SSF52440 4 97 1.25E-28 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RPE_RS10605 41eb921f5031a15e7071df751f96e50d 308 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 5 305 33.148 T 23-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RPE_RS10605 41eb921f5031a15e7071df751f96e50d 308 Gene3D G3DSA:3.30.470.20 176 304 2.5E-41 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RPE_RS10605 41eb921f5031a15e7071df751f96e50d 308 Gene3D G3DSA:3.30.470.20 88 105 2.5E-41 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RPE_RS10605 41eb921f5031a15e7071df751f96e50d 308 Gene3D G3DSA:3.40.50.20 4 85 5.9E-27 T 23-04-2016 IPR016185 Pre-ATP-grasp domain RPE_RS10605 41eb921f5031a15e7071df751f96e50d 308 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 6 304 1.4E-79 T 23-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RPE_RS10605 41eb921f5031a15e7071df751f96e50d 308 Gene3D G3DSA:3.30.1490.20 109 175 2.9E-10 T 23-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RPE_RS10605 41eb921f5031a15e7071df751f96e50d 308 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 65 76 - T 23-04-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RPE_RS10605 41eb921f5031a15e7071df751f96e50d 308 PANTHER PTHR23132 3 304 1.8E-64 T 23-04-2016 RPE_RS12365 b70dbdcaa3867c5fadb9cca51da56186 298 SUPERFAMILY SSF81301 3 144 2.68E-17 T 23-04-2016 RPE_RS12365 b70dbdcaa3867c5fadb9cca51da56186 298 Pfam PF01909 Nucleotidyltransferase domain 30 122 1.2E-4 T 23-04-2016 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 RPE_RS21460 97114d382fb12a7c8d34bda2e3157a7b 207 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 2 196 9.6E-50 T 23-04-2016 IPR002751 Cobalamin (vitamin B12) biosynthesis CbiM family GO:0000041|GO:0016021 UniPathway: UPA00148 RPE_RS21460 97114d382fb12a7c8d34bda2e3157a7b 207 PANTHER PTHR34229 2 205 6.9E-41 T 23-04-2016 RPE_RS21460 97114d382fb12a7c8d34bda2e3157a7b 207 PANTHER PTHR34229:SF1 2 205 6.9E-41 T 23-04-2016 RPE_RS02350 ff7df744bd7f651799ede917b20f8356 265 Pfam PF12686 Protein of unknown function (DUF3800) 12 223 1.3E-14 T 23-04-2016 IPR024524 Protein of unknown function DUF3800 RPE_RS08880 b4ff9ceeeb53b0b59254621ad23b852d 172 Pfam PF06073 Bacterial protein of unknown function (DUF934) 51 155 1.2E-37 T 23-04-2016 IPR008318 Uncharacterised conserved protein UCP030820 RPE_RS08880 b4ff9ceeeb53b0b59254621ad23b852d 172 PIRSF PIRSF030820 2 167 5.7E-53 T 23-04-2016 IPR008318 Uncharacterised conserved protein UCP030820 RPE_RS08975 6f1e115847d9a1fd886e36c5fdef948c 270 PANTHER PTHR11941 2 267 3.9E-151 T 23-04-2016 RPE_RS08975 6f1e115847d9a1fd886e36c5fdef948c 270 PANTHER PTHR11941:SF65 2 267 3.9E-151 T 23-04-2016 RPE_RS08975 6f1e115847d9a1fd886e36c5fdef948c 270 Gene3D G3DSA:3.90.226.10 3 267 2.9E-68 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS08975 6f1e115847d9a1fd886e36c5fdef948c 270 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 114 134 - T 23-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 RPE_RS08975 6f1e115847d9a1fd886e36c5fdef948c 270 SUPERFAMILY SSF52096 2 267 1.61E-70 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS08975 6f1e115847d9a1fd886e36c5fdef948c 270 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 268 2.3E-42 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RPE_RS07620 e7e1ba81002d38f0b44353c9db15c73e 330 Gene3D G3DSA:3.40.50.720 2 182 1.6E-30 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS07620 e7e1ba81002d38f0b44353c9db15c73e 330 Pfam PF16363 GDP-mannose 4,6 dehydratase 7 308 4.3E-39 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS07620 e7e1ba81002d38f0b44353c9db15c73e 330 SUPERFAMILY SSF51735 1 316 1.33E-62 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS07620 e7e1ba81002d38f0b44353c9db15c73e 330 Gene3D G3DSA:3.90.25.10 183 319 3.4E-30 T 23-04-2016 RPE_RS07620 e7e1ba81002d38f0b44353c9db15c73e 330 PANTHER PTHR10366 64 321 3.1E-56 T 23-04-2016 RPE_RS07620 e7e1ba81002d38f0b44353c9db15c73e 330 PANTHER PTHR10366:SF41 64 321 3.1E-56 T 23-04-2016 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 RPE_RS04165 80c87ccc463b22f9aefd093fc4542d7a 64 Pfam PF10049 Protein of unknown function (DUF2283) 5 52 6.9E-18 T 23-04-2016 IPR019270 Protein of unknown function DUF2283 RPE_RS07535 51fb0f3d53ac6069470c4f41421ed20a 180 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 84 1.9E-8 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RPE_RS07535 51fb0f3d53ac6069470c4f41421ed20a 180 SMART SM00855 3 119 4.2E-6 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RPE_RS07535 51fb0f3d53ac6069470c4f41421ed20a 180 Gene3D G3DSA:3.40.50.1240 1 173 8.3E-49 T 23-04-2016 IPR029033 Histidine phosphatase superfamily RPE_RS07535 51fb0f3d53ac6069470c4f41421ed20a 180 SUPERFAMILY SSF53254 1 171 4.07E-30 T 23-04-2016 IPR029033 Histidine phosphatase superfamily RPE_RS07535 51fb0f3d53ac6069470c4f41421ed20a 180 PANTHER PTHR20935 1 84 1.5E-16 T 23-04-2016 RPE_RS05035 aa344b952da47b483290224b0298c8a1 314 Pfam PF02653 Branched-chain amino acid transport system / permease component 32 293 2.2E-42 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RPE_RS05035 aa344b952da47b483290224b0298c8a1 314 PANTHER PTHR30482 7 313 1.4E-81 T 23-04-2016 RPE_RS20165 8297d8a444a8506cc5b80708a182bf33 107 Pfam PF05284 Protein of unknown function (DUF736) 3 100 9.8E-35 T 23-04-2016 IPR007948 Protein of unknown function DUF736 RPE_RS13490 a75558d19c9816c011c62f99ff8b2762 74 Pfam PF11519 Protein of unknown function (DUF3222) 1 74 5.4E-38 T 23-04-2016 IPR021599 Protein of unknown function DUF3222 RPE_RS13490 a75558d19c9816c011c62f99ff8b2762 74 Gene3D G3DSA:1.10.287.780 1 68 1.7E-42 T 23-04-2016 IPR023104 ITPase-like domain RPE_RS14875 0c367903dc805e015f52dfe1dfaea808 426 Pfam PF13751 Transposase DDE domain 359 415 5.8E-6 T 23-04-2016 IPR025668 Transposase DDE domain RPE_RS14875 0c367903dc805e015f52dfe1dfaea808 426 PANTHER PTHR33408 4 335 1.6E-31 T 23-04-2016 RPE_RS14875 0c367903dc805e015f52dfe1dfaea808 426 Pfam PF05598 Transposase domain (DUF772) 60 126 7.9E-7 T 23-04-2016 IPR008490 Transposase InsH, N-terminal RPE_RS21935 0c367903dc805e015f52dfe1dfaea808 426 Pfam PF13751 Transposase DDE domain 359 415 5.8E-6 T 23-04-2016 IPR025668 Transposase DDE domain RPE_RS21935 0c367903dc805e015f52dfe1dfaea808 426 PANTHER PTHR33408 4 335 1.6E-31 T 23-04-2016 RPE_RS21935 0c367903dc805e015f52dfe1dfaea808 426 Pfam PF05598 Transposase domain (DUF772) 60 126 7.9E-7 T 23-04-2016 IPR008490 Transposase InsH, N-terminal RPE_RS22920 0c367903dc805e015f52dfe1dfaea808 426 Pfam PF13751 Transposase DDE domain 359 415 5.8E-6 T 23-04-2016 IPR025668 Transposase DDE domain RPE_RS22920 0c367903dc805e015f52dfe1dfaea808 426 PANTHER PTHR33408 4 335 1.6E-31 T 23-04-2016 RPE_RS22920 0c367903dc805e015f52dfe1dfaea808 426 Pfam PF05598 Transposase domain (DUF772) 60 126 7.9E-7 T 23-04-2016 IPR008490 Transposase InsH, N-terminal RPE_RS21350 1e69862f9eaa70b6a8c9848b286cf28a 148 Pfam PF04138 GtrA-like protein 24 138 8.2E-21 T 23-04-2016 IPR007267 GtrA-like protein GO:0000271|GO:0006810|GO:0016021 RPE_RS02005 c5c330d9c7e0370ebb243d901111ec78 114 Pfam PF01934 Protein of unknown function DUF86 14 108 4.3E-18 T 23-04-2016 IPR008201 Protein of unknown function DUF86 RPE_RS02005 c5c330d9c7e0370ebb243d901111ec78 114 PANTHER PTHR34139 1 114 2.5E-25 T 23-04-2016 RPE_RS01580 1aa2312d9700f232ab4c95ca39998adb 198 SUPERFAMILY SSF52833 45 191 1.52E-31 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS01580 1aa2312d9700f232ab4c95ca39998adb 198 PANTHER PTHR10681:SF107 1 187 8.6E-49 T 23-04-2016 RPE_RS01580 1aa2312d9700f232ab4c95ca39998adb 198 Pfam PF08534 Redoxin 52 186 1.4E-14 T 23-04-2016 IPR013740 Redoxin GO:0016491 RPE_RS01580 1aa2312d9700f232ab4c95ca39998adb 198 PANTHER PTHR10681 1 187 8.6E-49 T 23-04-2016 RPE_RS01580 1aa2312d9700f232ab4c95ca39998adb 198 Gene3D G3DSA:3.40.30.10 20 192 1.3E-39 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS01580 1aa2312d9700f232ab4c95ca39998adb 198 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 19 192 1.7E-45 T 23-04-2016 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 RPE_RS01580 1aa2312d9700f232ab4c95ca39998adb 198 ProSitePatterns PS00194 Thioredoxin family active site. 85 103 - T 23-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 RPE_RS04775 8097d22f54da82b92d834229fcbedac0 175 Pfam PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal 6 41 2.8E-21 T 23-04-2016 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 RPE_RS04775 8097d22f54da82b92d834229fcbedac0 175 Pfam PF00355 Rieske [2Fe-2S] domain 106 163 4.6E-14 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RPE_RS04775 8097d22f54da82b92d834229fcbedac0 175 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 10 175 1.0E-70 T 23-04-2016 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 RPE_RS04775 8097d22f54da82b92d834229fcbedac0 175 PRINTS PR00162 Rieske 2Fe-2S subunit signature 113 124 1.5E-16 T 23-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RPE_RS04775 8097d22f54da82b92d834229fcbedac0 175 PRINTS PR00162 Rieske 2Fe-2S subunit signature 147 159 1.5E-16 T 23-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RPE_RS04775 8097d22f54da82b92d834229fcbedac0 175 PRINTS PR00162 Rieske 2Fe-2S subunit signature 135 147 1.5E-16 T 23-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RPE_RS04775 8097d22f54da82b92d834229fcbedac0 175 Gene3D G3DSA:1.20.5.510 5 41 1.1E-22 T 23-04-2016 RPE_RS04775 8097d22f54da82b92d834229fcbedac0 175 Gene3D G3DSA:2.102.10.10 49 173 2.4E-38 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RPE_RS04775 8097d22f54da82b92d834229fcbedac0 175 PANTHER PTHR10134 8 175 2.1E-70 T 23-04-2016 IPR014349 Rieske iron-sulphur protein GO:0016679|GO:0055114 RPE_RS04775 8097d22f54da82b92d834229fcbedac0 175 SUPERFAMILY SSF50022 32 174 2.07E-40 T 23-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RPE_RS08525 5f79e1595d6b4ee5a9c3444b05e1e47c 292 PANTHER PTHR11795:SF371 1 290 9.4E-89 T 23-04-2016 RPE_RS08525 5f79e1595d6b4ee5a9c3444b05e1e47c 292 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 280 1.1E-34 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RPE_RS08525 5f79e1595d6b4ee5a9c3444b05e1e47c 292 PANTHER PTHR11795 1 290 9.4E-89 T 23-04-2016 RPE_RS11880 c2b661fe93857b9b6ac98746bc36dbd7 399 SUPERFAMILY SSF52266 147 390 1.07E-28 T 23-04-2016 IPR013830 SGNH hydrolase-type esterase domain RPE_RS05960 dbb8df368a6addf63bdff728c6220a99 141 PIRSF PIRSF009533 1 138 2.0E-48 T 23-04-2016 IPR009967 Flagellum biosynthesis repressor FlbT GO:0006402|GO:0048027|GO:1902209 RPE_RS05960 dbb8df368a6addf63bdff728c6220a99 141 Pfam PF07378 Flagellar protein FlbT 1 124 1.3E-39 T 23-04-2016 IPR009967 Flagellum biosynthesis repressor FlbT GO:0006402|GO:0048027|GO:1902209 RPE_RS08485 9adb5f874ab912b8eed88b064bbedf57 251 Pfam PF12697 Alpha/beta hydrolase family 40 227 2.8E-6 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS08485 9adb5f874ab912b8eed88b064bbedf57 251 SUPERFAMILY SSF53474 34 215 3.41E-26 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS08485 9adb5f874ab912b8eed88b064bbedf57 251 Gene3D G3DSA:3.40.50.1820 32 243 2.2E-35 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS14645 4ea6b165a15059e4d9568f2d6c518778 578 PANTHER PTHR34001 383 577 7.7E-43 T 23-04-2016 RPE_RS14645 4ea6b165a15059e4d9568f2d6c518778 578 PANTHER PTHR34001 330 367 7.7E-43 T 23-04-2016 RPE_RS14645 4ea6b165a15059e4d9568f2d6c518778 578 Gene3D G3DSA:2.40.160.20 330 568 3.3E-35 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RPE_RS14645 4ea6b165a15059e4d9568f2d6c518778 578 Pfam PF13505 Outer membrane protein beta-barrel domain 330 568 2.7E-15 T 23-04-2016 IPR027385 Outer membrane protein beta-barrel RPE_RS14645 4ea6b165a15059e4d9568f2d6c518778 578 Pfam PF01278 Omptin family 100 289 9.5E-8 T 23-04-2016 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 RPE_RS14645 4ea6b165a15059e4d9568f2d6c518778 578 Gene3D G3DSA:2.40.128.90 38 288 5.5E-19 T 23-04-2016 IPR023619 Peptidase A26 GO:0004190 RPE_RS14645 4ea6b165a15059e4d9568f2d6c518778 578 SUPERFAMILY SSF56925 394 569 2.88E-22 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RPE_RS14645 4ea6b165a15059e4d9568f2d6c518778 578 SUPERFAMILY SSF56925 342 359 2.88E-22 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RPE_RS14645 4ea6b165a15059e4d9568f2d6c518778 578 SUPERFAMILY SSF69917 38 325 3.14E-46 T 23-04-2016 IPR020080 Outer membrane adhesin/peptidase omptin GO:0004190 RPE_RS08970 9d0b8fddb4e884fe3e074029cc4313dd 290 SUPERFAMILY SSF51735 9 251 1.38E-61 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS08970 9d0b8fddb4e884fe3e074029cc4313dd 290 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 7.4E-24 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS08970 9d0b8fddb4e884fe3e074029cc4313dd 290 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 7.4E-24 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS08970 9d0b8fddb4e884fe3e074029cc4313dd 290 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 7.4E-24 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS08970 9d0b8fddb4e884fe3e074029cc4313dd 290 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 7.4E-24 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS08970 9d0b8fddb4e884fe3e074029cc4313dd 290 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 7.4E-24 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS08970 9d0b8fddb4e884fe3e074029cc4313dd 290 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 250 4.6E-40 T 23-04-2016 RPE_RS08970 9d0b8fddb4e884fe3e074029cc4313dd 290 PANTHER PTHR24322:SF562 159 193 2.9E-44 T 23-04-2016 RPE_RS08970 9d0b8fddb4e884fe3e074029cc4313dd 290 PANTHER PTHR24322:SF562 14 143 2.9E-44 T 23-04-2016 RPE_RS08970 9d0b8fddb4e884fe3e074029cc4313dd 290 PANTHER PTHR24322 159 193 2.9E-44 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS08970 9d0b8fddb4e884fe3e074029cc4313dd 290 PANTHER PTHR24322 14 143 2.9E-44 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS08970 9d0b8fddb4e884fe3e074029cc4313dd 290 Gene3D G3DSA:3.40.50.720 4 251 6.9E-62 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS15325 a592ee7a463cd1ccb7dd707ea598ebdb 287 Pfam PF02653 Branched-chain amino acid transport system / permease component 9 275 2.0E-41 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RPE_RS15325 a592ee7a463cd1ccb7dd707ea598ebdb 287 PANTHER PTHR11795 1 287 3.9E-145 T 23-04-2016 RPE_RS15325 a592ee7a463cd1ccb7dd707ea598ebdb 287 PANTHER PTHR11795:SF379 1 287 3.9E-145 T 23-04-2016 RPE_RS03395 443dd787ebb4181429c19875d143de56 381 SUPERFAMILY SSF53098 53 215 2.73E-25 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RPE_RS03395 443dd787ebb4181429c19875d143de56 381 Gene3D G3DSA:3.30.420.10 54 209 5.9E-26 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RPE_RS03395 443dd787ebb4181429c19875d143de56 381 Pfam PF13683 Integrase core domain 145 209 3.7E-17 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 RPE_RS20145 3c0317bb81ba3c7b6ee7d21f0fcc3870 295 Pfam PF10134 Replication initiator protein A 27 256 1.3E-93 T 23-04-2016 IPR018777 Replication initiator protein A RPE_RS02625 deeaadfe78525ed21b40dc4839a3d72c 414 Gene3D G3DSA:3.30.470.20 118 309 2.5E-21 T 23-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RPE_RS02625 deeaadfe78525ed21b40dc4839a3d72c 414 SUPERFAMILY SSF56059 122 310 3.18E-24 T 23-04-2016 RPE_RS08730 e56726948eaaf1bf3fa36335e2a81c18 189 SUPERFAMILY SSF81301 7 159 1.86E-21 T 23-04-2016 RPE_RS16520 0b1a70848e37a85d493f6b411fefa37b 361 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 5 357 5.1E-87 T 23-04-2016 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 RPE_RS16520 0b1a70848e37a85d493f6b411fefa37b 361 Pfam PF03739 Predicted permease YjgP/YjgQ family 8 355 3.8E-56 T 23-04-2016 IPR005495 Permease LptG/LptF-related GO:0016021 RPE_RS16520 0b1a70848e37a85d493f6b411fefa37b 361 PANTHER PTHR33529 1 360 5.2E-94 T 23-04-2016 RPE_RS16520 0b1a70848e37a85d493f6b411fefa37b 361 PANTHER PTHR33529:SF1 1 360 5.2E-94 T 23-04-2016 RPE_RS14050 c8aa223192b964cbd07a37eaf4bc423a 400 Pfam PF01494 FAD binding domain 11 317 5.8E-29 T 23-04-2016 IPR002938 FAD-binding domain GO:0071949 RPE_RS14050 c8aa223192b964cbd07a37eaf4bc423a 400 SUPERFAMILY SSF51905 278 396 7.63E-48 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS14050 c8aa223192b964cbd07a37eaf4bc423a 400 SUPERFAMILY SSF51905 10 179 7.63E-48 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS14050 c8aa223192b964cbd07a37eaf4bc423a 400 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 12 389 7.8E-102 T 23-04-2016 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 UniPathway: UPA00232 RPE_RS14050 c8aa223192b964cbd07a37eaf4bc423a 400 Gene3D G3DSA:3.50.50.60 270 345 3.6E-39 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS14050 c8aa223192b964cbd07a37eaf4bc423a 400 Gene3D G3DSA:3.50.50.60 10 184 3.6E-39 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS14050 c8aa223192b964cbd07a37eaf4bc423a 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 282 297 3.6E-22 T 23-04-2016 RPE_RS14050 c8aa223192b964cbd07a37eaf4bc423a 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 12 34 3.6E-22 T 23-04-2016 RPE_RS14050 c8aa223192b964cbd07a37eaf4bc423a 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 297 313 3.6E-22 T 23-04-2016 RPE_RS14050 c8aa223192b964cbd07a37eaf4bc423a 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 158 173 3.6E-22 T 23-04-2016 RPE_RS14050 c8aa223192b964cbd07a37eaf4bc423a 400 PANTHER PTHR13789:SF5 1 397 9.5E-99 T 23-04-2016 RPE_RS14050 c8aa223192b964cbd07a37eaf4bc423a 400 PANTHER PTHR13789 1 397 9.5E-99 T 23-04-2016 RPE_RS17885 d297d07a3b266bc8e2843a24c35c85c1 120 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 6 120 2.4E-44 T 23-04-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17885 d297d07a3b266bc8e2843a24c35c85c1 120 Gene3D G3DSA:3.30.420.100 24 120 1.0E-40 T 23-04-2016 RPE_RS17885 d297d07a3b266bc8e2843a24c35c85c1 120 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 5 120 2.7E-45 T 23-04-2016 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17885 d297d07a3b266bc8e2843a24c35c85c1 120 PANTHER PTHR12899 3 120 1.4E-44 T 23-04-2016 RPE_RS17885 d297d07a3b266bc8e2843a24c35c85c1 120 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 3 120 29.698 T 23-04-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17885 d297d07a3b266bc8e2843a24c35c85c1 120 SUPERFAMILY SSF53137 6 118 3.49E-51 T 23-04-2016 RPE_RS21125 f6a89b53738de96e91e37d94549fa2af 121 PANTHER PTHR38590 1 121 2.5E-39 T 23-04-2016 RPE_RS21125 f6a89b53738de96e91e37d94549fa2af 121 PANTHER PTHR38590:SF1 1 121 2.5E-39 T 23-04-2016 RPE_RS21125 f6a89b53738de96e91e37d94549fa2af 121 SUPERFAMILY SSF52980 5 114 9.65E-21 T 23-04-2016 IPR011335 Restriction endonuclease type II-like RPE_RS21125 f6a89b53738de96e91e37d94549fa2af 121 Pfam PF04480 Protein of unknown function (DUF559) 9 112 1.1E-37 T 23-04-2016 IPR007569 Domain of unknown function DUF559 RPE_RS00880 bd181d7195e6f0cb228bd1c0695b36e2 227 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 9 214 1.3E-58 T 23-04-2016 IPR011812 Monofunctional biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 UniPathway: UPA00219 RPE_RS00880 bd181d7195e6f0cb228bd1c0695b36e2 227 PANTHER PTHR30400 5 213 4.5E-79 T 23-04-2016 RPE_RS00880 bd181d7195e6f0cb228bd1c0695b36e2 227 Gene3D G3DSA:1.10.3810.10 50 197 3.5E-47 T 23-04-2016 RPE_RS00880 bd181d7195e6f0cb228bd1c0695b36e2 227 PANTHER PTHR30400:SF0 5 213 4.5E-79 T 23-04-2016 RPE_RS00880 bd181d7195e6f0cb228bd1c0695b36e2 227 SUPERFAMILY SSF53955 21 201 4.5E-47 T 23-04-2016 IPR023346 Lysozyme-like domain RPE_RS00880 bd181d7195e6f0cb228bd1c0695b36e2 227 Pfam PF00912 Transglycosylase 49 195 1.8E-42 T 23-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 RPE_RS00880 bd181d7195e6f0cb228bd1c0695b36e2 227 Hamap MF_00766 Monofunctional biosynthetic peptidoglycan transglycosylase [mtgA]. 3 219 37.922 T 23-04-2016 IPR011812 Monofunctional biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 UniPathway: UPA00219 RPE_RS06805 aa6c21955fe132ee5f66d1d0f5d67495 233 Pfam PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus 132 232 9.1E-36 T 23-04-2016 IPR010940 Magnesium-protoporphyrin IX methyltransferase, C-terminal GO:0015995|GO:0046406 KEGG: 00860+2.1.1.11|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RPE_RS06805 aa6c21955fe132ee5f66d1d0f5d67495 233 SUPERFAMILY SSF53335 6 153 5.97E-29 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS06805 aa6c21955fe132ee5f66d1d0f5d67495 233 TIGRFAM TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase 10 230 1.7E-77 T 23-04-2016 IPR010251 Magnesium-protoporphyrin IX methyltransferase GO:0015995|GO:0046406 KEGG: 00860+2.1.1.11|MetaCyc: PWY-5531|MetaCyc: PWY-7159 RPE_RS06805 aa6c21955fe132ee5f66d1d0f5d67495 233 Pfam PF03602 Conserved hypothetical protein 95 40 102 6.3E-8 T 23-04-2016 RPE_RS06805 aa6c21955fe132ee5f66d1d0f5d67495 233 PANTHER PTHR10108 7 149 7.4E-20 T 23-04-2016 RPE_RS06805 aa6c21955fe132ee5f66d1d0f5d67495 233 Gene3D G3DSA:3.40.50.150 13 154 1.6E-25 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS05360 bb69ed012b8335f49542211741b19dd4 285 Gene3D G3DSA:3.40.50.410 47 192 1.8E-4 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS05360 bb69ed012b8335f49542211741b19dd4 285 SUPERFAMILY SSF53300 47 241 2.22E-16 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS05360 bb69ed012b8335f49542211741b19dd4 285 Pfam PF06707 Protein of unknown function (DUF1194) 45 251 1.7E-82 T 23-04-2016 IPR010607 Protein of unknown function DUF1194 RPE_RS02900 694deae31a3a88e72e23865673b703d0 88 Pfam PF00550 Phosphopantetheine attachment site 10 74 1.2E-5 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain RPE_RS02900 694deae31a3a88e72e23865673b703d0 88 Gene3D G3DSA:1.10.1200.10 7 80 1.4E-15 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain RPE_RS02900 694deae31a3a88e72e23865673b703d0 88 SUPERFAMILY SSF47336 7 83 3.45E-12 T 23-04-2016 IPR009081 Phosphopantetheine binding ACP domain RPE_RS19155 4d73b9d0f78ea39524a1a646b93f5c3d 200 Pfam PF00583 Acetyltransferase (GNAT) family 90 161 5.6E-7 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RPE_RS19155 4d73b9d0f78ea39524a1a646b93f5c3d 200 Gene3D G3DSA:3.40.630.30 20 162 3.8E-16 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS19155 4d73b9d0f78ea39524a1a646b93f5c3d 200 SUPERFAMILY SSF55729 20 165 7.27E-20 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS19155 4d73b9d0f78ea39524a1a646b93f5c3d 200 PANTHER PTHR33303:SF4 2 193 1.0E-49 T 23-04-2016 RPE_RS19155 4d73b9d0f78ea39524a1a646b93f5c3d 200 PANTHER PTHR33303 2 193 1.0E-49 T 23-04-2016 RPE_RS22530 978ee698d7fb6541eac9b33e1c6cfcef 197 Pfam PF10649 Protein of unknown function (DUF2478) 13 171 2.3E-41 T 23-04-2016 IPR018912 Protein of unknown function DUF2478 RPE_RS17955 a9da129f80e2368710128727d9a94596 99 PANTHER PTHR11620 8 95 3.6E-36 T 23-04-2016 RPE_RS17955 a9da129f80e2368710128727d9a94596 99 ProSitePatterns PS00050 Ribosomal protein L23 signature. 81 96 - T 23-04-2016 IPR001014 Ribosomal protein L23/L25, conserved site RPE_RS17955 a9da129f80e2368710128727d9a94596 99 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 9 98 21.548 T 23-04-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 RPE_RS17955 a9da129f80e2368710128727d9a94596 99 Gene3D G3DSA:3.30.70.330 7 98 2.4E-36 T 23-04-2016 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 RPE_RS17955 a9da129f80e2368710128727d9a94596 99 SUPERFAMILY SSF54189 7 96 4.32E-32 T 23-04-2016 IPR012678 Ribosomal protein L23/L15e core domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17955 a9da129f80e2368710128727d9a94596 99 Pfam PF00276 Ribosomal protein L23 10 95 5.6E-31 T 23-04-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 RPE_RS20660 705f0ac4d981b15dcca908015ee3d35f 138 Pfam PF06146 Phosphate-starvation-inducible E 55 121 9.3E-17 T 23-04-2016 IPR020948 Phosphate-starvation-induced PsiE-like RPE_RS20660 705f0ac4d981b15dcca908015ee3d35f 138 PIRSF PIRSF029598 12 133 5.8E-25 T 23-04-2016 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 RPE_RS22610 3fa66fdfb177bea85b71aec9fd455bee 155 Pfam PF03270 Protein of unknown function, DUF269 34 153 2.7E-54 T 23-04-2016 IPR004952 Uncharacterised protein family UPF0460 RPE_RS22610 3fa66fdfb177bea85b71aec9fd455bee 155 PIRSF PIRSF005788 1 155 8.2E-70 T 23-04-2016 IPR004952 Uncharacterised protein family UPF0460 RPE_RS22610 3fa66fdfb177bea85b71aec9fd455bee 155 TIGRFAM TIGR02935 TIGR02935: probable nitrogen fixation protein 14 153 6.8E-68 T 23-04-2016 IPR004952 Uncharacterised protein family UPF0460 RPE_RS20070 b628f2ff3dfb63b7b949a8efdd482cd0 334 TIGRFAM TIGR02775 TrbG_Ti: P-type conjugative transfer protein TrbG 107 317 3.9E-87 T 23-04-2016 IPR014142 P-type conjugative transfer protein TrbG RPE_RS20070 b628f2ff3dfb63b7b949a8efdd482cd0 334 Pfam PF03524 Conjugal transfer protein 106 328 2.0E-65 T 23-04-2016 IPR010258 Conjugal transfer, TrbG/VirB9/CagX RPE_RS07560 db43d7715f99aa645f9cff1490b6f81e 629 PRINTS PR01005 Flagellar hook-associated protein signature 8 31 2.1E-6 T 23-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RPE_RS07560 db43d7715f99aa645f9cff1490b6f81e 629 PRINTS PR01005 Flagellar hook-associated protein signature 46 68 2.1E-6 T 23-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RPE_RS07560 db43d7715f99aa645f9cff1490b6f81e 629 PRINTS PR01005 Flagellar hook-associated protein signature 122 142 2.1E-6 T 23-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RPE_RS07560 db43d7715f99aa645f9cff1490b6f81e 629 PRINTS PR01005 Flagellar hook-associated protein signature 155 179 2.1E-6 T 23-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RPE_RS07560 db43d7715f99aa645f9cff1490b6f81e 629 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 6 371 3.0E-79 T 23-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RPE_RS07560 db43d7715f99aa645f9cff1490b6f81e 629 SUPERFAMILY SSF64518 398 628 5.36E-10 T 23-04-2016 RPE_RS07560 db43d7715f99aa645f9cff1490b6f81e 629 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 565 627 4.0E-12 T 23-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RPE_RS07560 db43d7715f99aa645f9cff1490b6f81e 629 Pfam PF00460 Flagella basal body rod protein 7 36 7.1E-6 T 23-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RPE_RS07560 db43d7715f99aa645f9cff1490b6f81e 629 PANTHER PTHR30033:SF1 1 629 4.0E-91 T 23-04-2016 RPE_RS07560 db43d7715f99aa645f9cff1490b6f81e 629 PANTHER PTHR30033 1 629 4.0E-91 T 23-04-2016 RPE_RS19235 0eda709cb1978b8b6527a23c50283d1c 187 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 7 186 4.5E-31 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RPE_RS19235 0eda709cb1978b8b6527a23c50283d1c 187 Gene3D G3DSA:3.40.50.1240 5 186 7.8E-30 T 23-04-2016 IPR029033 Histidine phosphatase superfamily RPE_RS19235 0eda709cb1978b8b6527a23c50283d1c 187 PANTHER PTHR23029 5 187 1.7E-55 T 23-04-2016 RPE_RS19235 0eda709cb1978b8b6527a23c50283d1c 187 PANTHER PTHR23029:SF28 5 187 1.7E-55 T 23-04-2016 RPE_RS19235 0eda709cb1978b8b6527a23c50283d1c 187 SMART SM00855 6 148 2.0E-9 T 23-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 RPE_RS19235 0eda709cb1978b8b6527a23c50283d1c 187 SUPERFAMILY SSF53254 6 186 7.71E-36 T 23-04-2016 IPR029033 Histidine phosphatase superfamily RPE_RS17380 da7e95871074b553c51485527ca0dd59 312 PANTHER PTHR30273 1 311 4.7E-29 T 23-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component RPE_RS17380 da7e95871074b553c51485527ca0dd59 312 Pfam PF16220 Domain of unknown function (DUF4880) 2 43 2.3E-10 T 23-04-2016 IPR032623 FecR, N-terminal RPE_RS17380 da7e95871074b553c51485527ca0dd59 312 Pfam PF04773 FecR protein 110 200 1.7E-12 T 23-04-2016 IPR006860 FecR protein RPE_RS17380 da7e95871074b553c51485527ca0dd59 312 PIRSF PIRSF018266 1 311 3.6E-58 T 23-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component RPE_RS17380 da7e95871074b553c51485527ca0dd59 312 Pfam PF16344 Domain of unknown function (DUF4974) 215 287 7.1E-7 T 23-04-2016 IPR032508 Protein FecR, C-terminal RPE_RS02920 c98211de63be2469f7c79ae10dd614be 564 TIGRFAM TIGR03222 benzo_boxC: benzoyl-CoA-dihydrodiol lyase 17 564 2.9E-296 T 23-04-2016 IPR017633 Benzoyl-CoA-dihydrodiol lyase MetaCyc: PWY-1361 RPE_RS02920 c98211de63be2469f7c79ae10dd614be 564 SUPERFAMILY SSF52096 276 560 1.9E-15 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS02920 c98211de63be2469f7c79ae10dd614be 564 Gene3D G3DSA:3.90.226.10 275 498 4.4E-6 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS02920 c98211de63be2469f7c79ae10dd614be 564 PANTHER PTHR11941:SF54 14 228 5.0E-32 T 23-04-2016 RPE_RS02920 c98211de63be2469f7c79ae10dd614be 564 PANTHER PTHR11941:SF54 484 537 5.0E-32 T 23-04-2016 RPE_RS02920 c98211de63be2469f7c79ae10dd614be 564 SUPERFAMILY SSF52096 26 248 1.81E-33 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS02920 c98211de63be2469f7c79ae10dd614be 564 Pfam PF00378 Enoyl-CoA hydratase/isomerase 58 247 4.6E-21 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RPE_RS02920 c98211de63be2469f7c79ae10dd614be 564 PANTHER PTHR11941 14 228 5.0E-32 T 23-04-2016 RPE_RS02920 c98211de63be2469f7c79ae10dd614be 564 PANTHER PTHR11941 484 537 5.0E-32 T 23-04-2016 RPE_RS02920 c98211de63be2469f7c79ae10dd614be 564 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 139 159 - T 23-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 RPE_RS02920 c98211de63be2469f7c79ae10dd614be 564 Gene3D G3DSA:3.90.226.10 18 248 9.0E-39 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS10095 c7e160f340514aaed6efe3b403ba404f 630 PANTHER PTHR30540:SF36 20 630 0.0 T 23-04-2016 RPE_RS10095 c7e160f340514aaed6efe3b403ba404f 630 PANTHER PTHR30540 20 630 0.0 T 23-04-2016 RPE_RS10095 c7e160f340514aaed6efe3b403ba404f 630 Pfam PF02705 K+ potassium transporter 22 552 1.0E-202 T 23-04-2016 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 RPE_RS10095 c7e160f340514aaed6efe3b403ba404f 630 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 13 630 33.28 T 23-04-2016 IPR023051 Potassium uptake protein, low affinity, Kup RPE_RS13930 571044c90b4e625277f2605d92521aee 79 Pfam PF14384 BrnA antitoxin of type II toxin-antitoxin system 18 77 1.5E-15 T 23-04-2016 IPR025528 BrnA antitoxin of type II toxin-antitoxin system RPE_RS23430 322ca5553067df1b9b097e3d637ef46c 135 Pfam PF03724 META domain 41 123 1.2E-8 T 23-04-2016 IPR005184 Domain of unknown function DUF306, Meta/HslJ RPE_RS13565 3c2be8d781496edd4acc6c123315ba95 120 SUPERFAMILY SSF52172 5 116 1.21E-20 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS13565 3c2be8d781496edd4acc6c123315ba95 120 SMART SM00448 4 111 7.0E-7 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS13565 3c2be8d781496edd4acc6c123315ba95 120 Pfam PF00072 Response regulator receiver domain 6 110 2.5E-9 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS13565 3c2be8d781496edd4acc6c123315ba95 120 Gene3D G3DSA:3.40.50.2300 4 116 1.3E-17 T 23-04-2016 RPE_RS03355 aefcc46a55c2684b11e144548a29902d 141 SUPERFAMILY SSF54427 6 113 2.79E-20 T 23-04-2016 IPR032710 NTF2-like domain RPE_RS03355 aefcc46a55c2684b11e144548a29902d 141 Pfam PF12680 SnoaL-like domain 7 103 1.9E-11 T 23-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain RPE_RS03355 aefcc46a55c2684b11e144548a29902d 141 Gene3D G3DSA:3.10.450.50 6 114 2.2E-18 T 23-04-2016 IPR032710 NTF2-like domain RPE_RS17850 3ae76f3ded10254097158a25fde33a30 129 SUPERFAMILY SSF53137 14 129 3.44E-49 T 23-04-2016 RPE_RS17850 3ae76f3ded10254097158a25fde33a30 129 PANTHER PTHR11759 10 129 2.2E-69 T 23-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RPE_RS17850 3ae76f3ded10254097158a25fde33a30 129 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 10 126 8.8E-58 T 23-04-2016 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS17850 3ae76f3ded10254097158a25fde33a30 129 Pfam PF00411 Ribosomal protein S11 19 128 5.9E-49 T 23-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RPE_RS17850 3ae76f3ded10254097158a25fde33a30 129 Gene3D G3DSA:3.30.420.80 6 129 8.3E-56 T 23-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RPE_RS17850 3ae76f3ded10254097158a25fde33a30 129 PIRSF PIRSF002131 1 129 4.9E-53 T 23-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RPE_RS17850 3ae76f3ded10254097158a25fde33a30 129 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 129 33.23 T 23-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RPE_RS21635 0f1a31304b6c673b763967d7d9616edd 363 PANTHER PTHR12526 72 359 2.3E-34 T 23-04-2016 RPE_RS21635 0f1a31304b6c673b763967d7d9616edd 363 SUPERFAMILY SSF53756 51 356 5.83E-53 T 23-04-2016 RPE_RS21635 0f1a31304b6c673b763967d7d9616edd 363 Pfam PF13439 Glycosyltransferase Family 4 52 166 7.4E-10 T 23-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RPE_RS21635 0f1a31304b6c673b763967d7d9616edd 363 Gene3D G3DSA:3.40.50.2000 163 332 2.5E-20 T 23-04-2016 RPE_RS21635 0f1a31304b6c673b763967d7d9616edd 363 Pfam PF00534 Glycosyl transferases group 1 172 332 3.9E-20 T 23-04-2016 IPR001296 Glycosyl transferase, family 1 RPE_RS16970 f40e4493392ead929268be48f47bc02f 99 Pfam PF12096 Protein of unknown function (DUF3572) 10 91 8.4E-32 T 23-04-2016 IPR021955 Protein of unknown function DUF3572 RPE_RS24675 fa54c129e14a93b0679d7e35f7c65777 650 Pfam PF10983 Protein of unknown function (DUF2793) 23 109 2.1E-34 T 23-04-2016 IPR021251 Protein of unknown function DUF2793 RPE_RS06135 49238473ff274fa6e455afd341822cfe 315 SUPERFAMILY SSF52540 40 298 3.73E-34 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS06135 49238473ff274fa6e455afd341822cfe 315 Gene3D G3DSA:3.40.50.300 127 235 9.0E-29 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS06135 49238473ff274fa6e455afd341822cfe 315 Gene3D G3DSA:3.40.50.300 26 86 9.0E-29 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS06135 49238473ff274fa6e455afd341822cfe 315 PANTHER PTHR22908 7 270 8.2E-77 T 23-04-2016 RPE_RS06135 49238473ff274fa6e455afd341822cfe 315 SMART SM00382 38 216 1.9E-5 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS06135 49238473ff274fa6e455afd341822cfe 315 Pfam PF07728 AAA domain (dynein-related subfamily) 42 207 4.9E-9 T 23-04-2016 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 RPE_RS17540 211b6f07ae4c7aefc1d443880aad08e9 408 PANTHER PTHR23028 12 347 1.4E-25 T 23-04-2016 RPE_RS17540 211b6f07ae4c7aefc1d443880aad08e9 408 Pfam PF01757 Acyltransferase family 11 334 2.6E-30 T 23-04-2016 IPR002656 Acyltransferase 3 GO:0016747 RPE_RS21165 596f8fc3df5ed451045541dc4bca8dc0 357 SUPERFAMILY SSF51569 6 301 1.04E-80 T 23-04-2016 RPE_RS21165 596f8fc3df5ed451045541dc4bca8dc0 357 SMART SM00858 291 355 3.5E-6 T 23-04-2016 IPR013974 SAF domain RPE_RS21165 596f8fc3df5ed451045541dc4bca8dc0 357 SUPERFAMILY SSF51269 287 352 1.31E-7 T 23-04-2016 IPR006190 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal RPE_RS21165 596f8fc3df5ed451045541dc4bca8dc0 357 Gene3D G3DSA:3.90.1210.10 289 352 7.7E-6 T 23-04-2016 IPR006190 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal RPE_RS21165 596f8fc3df5ed451045541dc4bca8dc0 357 Pfam PF03102 NeuB family 40 277 6.2E-76 T 23-04-2016 IPR013132 N-acetylneuraminic acid synthase, N-terminal GO:0016051 RPE_RS21165 596f8fc3df5ed451045541dc4bca8dc0 357 Pfam PF13144 Chaperone for flagella basal body P-ring formation 289 354 6.4E-5 T 23-04-2016 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal RPE_RS21165 596f8fc3df5ed451045541dc4bca8dc0 357 PANTHER PTHR23416:SF1 1 300 8.3E-103 T 23-04-2016 RPE_RS21165 596f8fc3df5ed451045541dc4bca8dc0 357 PANTHER PTHR23416 1 300 8.3E-103 T 23-04-2016 RPE_RS21165 596f8fc3df5ed451045541dc4bca8dc0 357 Gene3D G3DSA:3.20.20.70 6 277 7.0E-96 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS06300 56a44b7dc2cccb0adeb25687f68fdb57 380 TIGRFAM TIGR00075 hypD: hydrogenase expression/formation protein HypD 2 372 6.9E-142 T 23-04-2016 IPR002780 Hydrogenase formation HypD protein GO:0046872 RPE_RS06300 56a44b7dc2cccb0adeb25687f68fdb57 380 Pfam PF01924 Hydrogenase formation hypA family 12 369 3.7E-151 T 23-04-2016 IPR002780 Hydrogenase formation HypD protein GO:0046872 RPE_RS06300 56a44b7dc2cccb0adeb25687f68fdb57 380 PANTHER PTHR30149:SF0 2 380 1.3E-201 T 23-04-2016 RPE_RS06300 56a44b7dc2cccb0adeb25687f68fdb57 380 PANTHER PTHR30149 2 380 1.3E-201 T 23-04-2016 RPE_RS06300 56a44b7dc2cccb0adeb25687f68fdb57 380 PIRSF PIRSF005622 1 374 9.8E-156 T 23-04-2016 IPR002780 Hydrogenase formation HypD protein GO:0046872 RPE_RS04695 52303a9071451547c8d9e3ee5622936a 157 ProDom PD049902 METHYLTRANSFERASE TRANSFERASE PRECURSOR ISOPRENYLCYSTEINE SIGNAL CARBOXYL TRANSMEMBRANE MEMBRANE FAMILY XCC3183 111 156 1.0E-19 T 23-04-2016 RPE_RS04695 52303a9071451547c8d9e3ee5622936a 157 Pfam PF04191 Phospholipid methyltransferase 45 143 2.0E-15 T 23-04-2016 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|UniPathway: UPA00753 RPE_RS04695 52303a9071451547c8d9e3ee5622936a 157 PANTHER PTHR12714 10 156 1.8E-20 T 23-04-2016 RPE_RS09180 19c23065b7fc4c07d357bcd7e608c8e8 165 Gene3D G3DSA:1.20.1260.10 3 164 2.2E-70 T 23-04-2016 IPR012347 Ferritin-related RPE_RS09180 19c23065b7fc4c07d357bcd7e608c8e8 165 PANTHER PTHR30565 6 163 1.1E-60 T 23-04-2016 RPE_RS09180 19c23065b7fc4c07d357bcd7e608c8e8 165 SUPERFAMILY SSF47240 3 156 1.16E-57 T 23-04-2016 IPR009078 Ferritin-like superfamily RPE_RS09180 19c23065b7fc4c07d357bcd7e608c8e8 165 Pfam PF05974 Domain of unknown function (DUF892) 8 164 2.8E-64 T 23-04-2016 IPR010287 Domain of unknown function DUF892 RPE_RS24170 cf19d692fb4248859cb8facffc6ecc53 851 TIGRFAM TIGR02302 aProt_lowcomp: TIGR02302 family protein 24 851 0.0 T 23-04-2016 IPR012683 Conserved hypothetical protein CHP02302, transmembrane RPE_RS24170 cf19d692fb4248859cb8facffc6ecc53 851 Pfam PF13779 Domain of unknown function (DUF4175) 37 849 2.3E-275 T 23-04-2016 IPR012683 Conserved hypothetical protein CHP02302, transmembrane RPE_RS05560 3fe3927914b997cee71dcd74aa7224bc 239 Pfam PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) 54 107 1.4E-4 T 23-04-2016 IPR002654 Glycosyl transferase, family 25 RPE_RS19505 e34edeb01e7549af8d2608a16e2c309b 157 Pfam PF07813 LTXXQ motif family protein 49 145 1.1E-8 T 23-04-2016 IPR012899 LTXXQ motif family protein GO:0042597 RPE_RS12965 098a83f7b63dfcd1ad0ac4ebef5d2ecd 167 Gene3D G3DSA:2.60.40.790 24 164 3.2E-38 T 23-04-2016 IPR008978 HSP20-like chaperone RPE_RS12965 098a83f7b63dfcd1ad0ac4ebef5d2ecd 167 PANTHER PTHR11527:SF96 5 165 1.4E-49 T 23-04-2016 RPE_RS12965 098a83f7b63dfcd1ad0ac4ebef5d2ecd 167 Pfam PF00011 Hsp20/alpha crystallin family 65 164 2.7E-22 T 23-04-2016 IPR002068 Alpha crystallin/Hsp20 domain RPE_RS12965 098a83f7b63dfcd1ad0ac4ebef5d2ecd 167 PANTHER PTHR11527 5 165 1.4E-49 T 23-04-2016 IPR031107 Small heat shock protein HSP20 RPE_RS12965 098a83f7b63dfcd1ad0ac4ebef5d2ecd 167 SUPERFAMILY SSF49764 28 165 1.94E-37 T 23-04-2016 IPR008978 HSP20-like chaperone RPE_RS08290 400ce28ff585a5e2c094f1fb23e430c8 244 PANTHER PTHR31272:SF4 1 235 1.1E-75 T 23-04-2016 RPE_RS08290 400ce28ff585a5e2c094f1fb23e430c8 244 PANTHER PTHR31272 1 235 1.1E-75 T 23-04-2016 RPE_RS08290 400ce28ff585a5e2c094f1fb23e430c8 244 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 11 221 2.4E-59 T 23-04-2016 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 RPE_RS05800 bcd748702fd700f2189ca0548fbd7066 95 PANTHER PTHR35401 5 93 6.8E-23 T 23-04-2016 RPE_RS05800 bcd748702fd700f2189ca0548fbd7066 95 Gene3D G3DSA:1.20.5.780 5 84 1.2E-22 T 23-04-2016 RPE_RS05800 bcd748702fd700f2189ca0548fbd7066 95 SUPERFAMILY SSF47598 6 83 1.56E-20 T 23-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 RPE_RS05800 bcd748702fd700f2189ca0548fbd7066 95 PANTHER PTHR35401:SF1 5 93 6.8E-23 T 23-04-2016 RPE_RS05800 bcd748702fd700f2189ca0548fbd7066 95 Pfam PF08681 Protein of unknown function (DUF1778) 9 84 2.2E-24 T 23-04-2016 IPR014795 Vibrio phage ICP1, Orf50 RPE_RS02985 50ed8a8b2e46c43718f329c2bbb6fba6 159 SUPERFAMILY SSF55729 17 145 1.05E-17 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS02985 50ed8a8b2e46c43718f329c2bbb6fba6 159 Pfam PF00583 Acetyltransferase (GNAT) family 65 145 1.0E-9 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RPE_RS02985 50ed8a8b2e46c43718f329c2bbb6fba6 159 PANTHER PTHR23091 10 145 1.7E-13 T 23-04-2016 RPE_RS02985 50ed8a8b2e46c43718f329c2bbb6fba6 159 Gene3D G3DSA:3.40.630.30 15 145 1.2E-18 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS10245 36734aaa17d9515e60af46c7e8142314 99 Pfam PF04365 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 12 92 2.7E-21 T 23-04-2016 IPR007460 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system RPE_RS19510 a96251730a0f0fcc6452892e07c9069f 78 Pfam PF11752 Protein of unknown function (DUF3309) 28 78 1.5E-12 T 23-04-2016 IPR021738 Protein of unknown function DUF3309 RPE_RS20585 cfe70d7a4b6550ca8816f1eefaa1a39d 156 SUPERFAMILY SSF54637 17 155 5.75E-28 T 23-04-2016 IPR029069 HotDog domain RPE_RS20585 cfe70d7a4b6550ca8816f1eefaa1a39d 156 Gene3D G3DSA:3.10.129.10 15 155 5.0E-24 T 23-04-2016 IPR029069 HotDog domain RPE_RS20585 cfe70d7a4b6550ca8816f1eefaa1a39d 156 Pfam PF13452 N-terminal half of MaoC dehydratase 29 146 7.3E-21 T 23-04-2016 RPE_RS23315 ab97c1b029dd43cfbfca11cce39f36f0 370 PANTHER PTHR30294:SF22 1 367 4.1E-216 T 23-04-2016 RPE_RS23315 ab97c1b029dd43cfbfca11cce39f36f0 370 Pfam PF12698 ABC-2 family transporter protein 23 362 1.8E-34 T 23-04-2016 RPE_RS23315 ab97c1b029dd43cfbfca11cce39f36f0 370 PANTHER PTHR30294 1 367 4.1E-216 T 23-04-2016 RPE_RS02790 5d26849bc764c22e801f115f40d86d5f 391 SUPERFAMILY SSF53067 130 321 2.52E-21 T 23-04-2016 RPE_RS02790 5d26849bc764c22e801f115f40d86d5f 391 Gene3D G3DSA:3.30.420.40 184 351 4.5E-15 T 23-04-2016 RPE_RS02790 5d26849bc764c22e801f115f40d86d5f 391 PANTHER PTHR18964 183 364 1.9E-43 T 23-04-2016 RPE_RS02790 5d26849bc764c22e801f115f40d86d5f 391 PANTHER PTHR18964:SF137 183 364 1.9E-43 T 23-04-2016 RPE_RS23045 872b1ef16d84864df403d1ea39a5f7b4 164 Gene3D G3DSA:3.30.530.20 12 160 6.1E-19 T 23-04-2016 IPR023393 START-like domain RPE_RS23045 872b1ef16d84864df403d1ea39a5f7b4 164 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 22 156 5.9E-11 T 23-04-2016 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 RPE_RS23045 872b1ef16d84864df403d1ea39a5f7b4 164 SUPERFAMILY SSF55961 11 157 1.37E-42 T 23-04-2016 RPE_RS02815 f0ba70318766a575d97c83c287257018 596 PANTHER PTHR13370 39 249 6.3E-46 T 23-04-2016 RPE_RS02815 f0ba70318766a575d97c83c287257018 596 PANTHER PTHR13370 318 408 6.3E-46 T 23-04-2016 RPE_RS02815 f0ba70318766a575d97c83c287257018 596 PANTHER PTHR13370:SF7 39 249 6.3E-46 T 23-04-2016 RPE_RS02815 f0ba70318766a575d97c83c287257018 596 PANTHER PTHR13370:SF7 318 408 6.3E-46 T 23-04-2016 RPE_RS02815 f0ba70318766a575d97c83c287257018 596 SUPERFAMILY SSF53335 321 409 4.43E-57 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS02815 f0ba70318766a575d97c83c287257018 596 SUPERFAMILY SSF53335 45 201 4.43E-57 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS02815 f0ba70318766a575d97c83c287257018 596 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 103 122 4.9E-19 T 23-04-2016 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 RPE_RS02815 f0ba70318766a575d97c83c287257018 596 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 69 81 4.9E-19 T 23-04-2016 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 RPE_RS02815 f0ba70318766a575d97c83c287257018 596 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 342 364 4.9E-19 T 23-04-2016 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 RPE_RS02815 f0ba70318766a575d97c83c287257018 596 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 365 379 4.9E-19 T 23-04-2016 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 RPE_RS02815 f0ba70318766a575d97c83c287257018 596 Pfam PF01555 DNA methylase 69 398 7.1E-44 T 23-04-2016 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 RPE_RS02815 f0ba70318766a575d97c83c287257018 596 Gene3D G3DSA:3.40.50.150 45 192 4.9E-59 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS02815 f0ba70318766a575d97c83c287257018 596 Gene3D G3DSA:3.40.50.150 318 431 4.9E-59 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS21135 7ba9767df47becd91e7c26e32a268d5b 357 PANTHER PTHR30482 13 302 3.1E-154 T 23-04-2016 RPE_RS21135 7ba9767df47becd91e7c26e32a268d5b 357 PANTHER PTHR30482 318 354 3.1E-154 T 23-04-2016 RPE_RS21135 7ba9767df47becd91e7c26e32a268d5b 357 PANTHER PTHR30482:SF5 13 302 3.1E-154 T 23-04-2016 RPE_RS21135 7ba9767df47becd91e7c26e32a268d5b 357 PANTHER PTHR30482:SF5 318 354 3.1E-154 T 23-04-2016 RPE_RS21135 7ba9767df47becd91e7c26e32a268d5b 357 Pfam PF02653 Branched-chain amino acid transport system / permease component 51 332 1.2E-42 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RPE_RS13180 5200211bbd8216cf9bad4643869a2e8c 109 PANTHER PTHR10072 5 109 3.0E-48 T 23-04-2016 RPE_RS13180 5200211bbd8216cf9bad4643869a2e8c 109 SUPERFAMILY SSF89360 4 98 1.0E-29 T 23-04-2016 IPR000361 FeS cluster biogenesis RPE_RS13180 5200211bbd8216cf9bad4643869a2e8c 109 Pfam PF01521 Iron-sulphur cluster biosynthesis 5 104 1.2E-17 T 23-04-2016 IPR000361 FeS cluster biogenesis RPE_RS13180 5200211bbd8216cf9bad4643869a2e8c 109 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 90 107 - T 23-04-2016 IPR017870 FeS cluster insertion, C-terminal, conserved site RPE_RS13180 5200211bbd8216cf9bad4643869a2e8c 109 Gene3D G3DSA:2.60.300.12 4 98 6.9E-32 T 23-04-2016 IPR000361 FeS cluster biogenesis RPE_RS13180 5200211bbd8216cf9bad4643869a2e8c 109 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 5 108 2.2E-36 T 23-04-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 RPE_RS24635 f296428ae60a536fce5487a0d5291eb8 493 SUPERFAMILY SSF53098 53 215 4.7E-25 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RPE_RS24635 f296428ae60a536fce5487a0d5291eb8 493 Pfam PF13683 Integrase core domain 145 209 5.4E-17 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 RPE_RS24635 f296428ae60a536fce5487a0d5291eb8 493 Gene3D G3DSA:3.30.420.10 54 209 1.0E-25 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RPE_RS00020 e3ccc1ff22cbf2f3b19a09f74edeff3e 402 PRINTS PR00313 NodO calcium binding signature 296 304 2.7E-10 T 23-04-2016 RPE_RS00020 e3ccc1ff22cbf2f3b19a09f74edeff3e 402 PRINTS PR00313 NodO calcium binding signature 313 322 2.7E-10 T 23-04-2016 RPE_RS00020 e3ccc1ff22cbf2f3b19a09f74edeff3e 402 PRINTS PR00313 NodO calcium binding signature 279 287 2.7E-10 T 23-04-2016 RPE_RS00020 e3ccc1ff22cbf2f3b19a09f74edeff3e 402 PRINTS PR00313 NodO calcium binding signature 157 168 2.7E-10 T 23-04-2016 RPE_RS00020 e3ccc1ff22cbf2f3b19a09f74edeff3e 402 Gene3D G3DSA:2.150.10.10 91 205 1.1E-11 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RPE_RS00020 e3ccc1ff22cbf2f3b19a09f74edeff3e 402 Gene3D G3DSA:2.150.10.10 206 388 4.1E-17 T 23-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal RPE_RS00020 e3ccc1ff22cbf2f3b19a09f74edeff3e 402 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 245 256 15.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RPE_RS00020 e3ccc1ff22cbf2f3b19a09f74edeff3e 402 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 157 167 14.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RPE_RS00020 e3ccc1ff22cbf2f3b19a09f74edeff3e 402 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 109 117 17.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RPE_RS00020 e3ccc1ff22cbf2f3b19a09f74edeff3e 402 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 143 150 5.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RPE_RS00020 e3ccc1ff22cbf2f3b19a09f74edeff3e 402 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 309 320 18.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RPE_RS00020 e3ccc1ff22cbf2f3b19a09f74edeff3e 402 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 194 205 11.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RPE_RS00020 e3ccc1ff22cbf2f3b19a09f74edeff3e 402 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 288 303 1.2 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RPE_RS00020 e3ccc1ff22cbf2f3b19a09f74edeff3e 402 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 91 99 42.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RPE_RS00020 e3ccc1ff22cbf2f3b19a09f74edeff3e 402 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 228 238 4.6 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RPE_RS00020 e3ccc1ff22cbf2f3b19a09f74edeff3e 402 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 276 286 16.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RPE_RS00020 e3ccc1ff22cbf2f3b19a09f74edeff3e 402 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 177 184 18.0 T 23-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RPE_RS15340 6f45b36a845e048c1419da379e3133bb 251 SUPERFAMILY SSF52540 5 246 2.61E-56 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15340 6f45b36a845e048c1419da379e3133bb 251 SMART SM00382 31 225 3.3E-4 T 23-04-2016 IPR003593 AAA+ ATPase domain RPE_RS15340 6f45b36a845e048c1419da379e3133bb 251 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 226 247 1.7E-6 T 23-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RPE_RS15340 6f45b36a845e048c1419da379e3133bb 251 Gene3D G3DSA:3.40.50.300 5 246 1.3E-60 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15340 6f45b36a845e048c1419da379e3133bb 251 Pfam PF00005 ABC transporter 23 178 2.2E-26 T 23-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RPE_RS15340 6f45b36a845e048c1419da379e3133bb 251 PANTHER PTHR24220:SF400 8 249 9.8E-155 T 23-04-2016 RPE_RS15340 6f45b36a845e048c1419da379e3133bb 251 PANTHER PTHR24220 8 249 9.8E-155 T 23-04-2016 RPE_RS06400 0b8f753558780e5b174fb9c9ce50e854 388 Pfam PF13379 NMT1-like family 4 262 1.3E-72 T 23-04-2016 RPE_RS06400 0b8f753558780e5b174fb9c9ce50e854 388 Gene3D G3DSA:3.40.190.10 137 242 1.7E-6 T 23-04-2016 RPE_RS06400 0b8f753558780e5b174fb9c9ce50e854 388 SUPERFAMILY SSF53850 4 107 6.24E-21 T 23-04-2016 RPE_RS06400 0b8f753558780e5b174fb9c9ce50e854 388 SUPERFAMILY SSF53850 134 257 6.24E-21 T 23-04-2016 RPE_RS06400 0b8f753558780e5b174fb9c9ce50e854 388 PANTHER PTHR30024:SF7 5 115 5.6E-119 T 23-04-2016 RPE_RS06400 0b8f753558780e5b174fb9c9ce50e854 388 PANTHER PTHR30024:SF7 134 350 5.6E-119 T 23-04-2016 RPE_RS06400 0b8f753558780e5b174fb9c9ce50e854 388 PANTHER PTHR30024 5 115 5.6E-119 T 23-04-2016 RPE_RS06400 0b8f753558780e5b174fb9c9ce50e854 388 PANTHER PTHR30024 134 350 5.6E-119 T 23-04-2016 RPE_RS08425 8f8465f0e882847f4ecc782c556258b1 153 PANTHER PTHR39337 1 148 7.2E-46 T 23-04-2016 RPE_RS08425 8f8465f0e882847f4ecc782c556258b1 153 PIRSF PIRSF024492 3 153 5.9E-37 T 23-04-2016 IPR014519 Uncharacterised conserved protein UCP024492 RPE_RS08425 8f8465f0e882847f4ecc782c556258b1 153 Pfam PF04343 Protein of unknown function, DUF488 18 136 1.6E-32 T 23-04-2016 IPR007438 Protein of unknown function DUF488 RPE_RS08425 8f8465f0e882847f4ecc782c556258b1 153 PANTHER PTHR39337:SF1 1 148 7.2E-46 T 23-04-2016 RPE_RS20815 ebc5ea1cbbf04e45ec8d13d3eb2ee00a 263 SUPERFAMILY SSF56925 40 263 9.42E-20 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RPE_RS20815 ebc5ea1cbbf04e45ec8d13d3eb2ee00a 263 Gene3D G3DSA:2.40.160.20 41 263 1.6E-23 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RPE_RS20815 ebc5ea1cbbf04e45ec8d13d3eb2ee00a 263 Pfam PF13505 Outer membrane protein beta-barrel domain 22 263 2.0E-13 T 23-04-2016 IPR027385 Outer membrane protein beta-barrel RPE_RS03825 d72c1540e053ab0ea0fa877334fe6786 257 Pfam PF13531 Bacterial extracellular solute-binding protein 30 249 1.9E-50 T 23-04-2016 RPE_RS03825 d72c1540e053ab0ea0fa877334fe6786 257 Gene3D G3DSA:3.40.190.10 116 210 3.3E-34 T 23-04-2016 RPE_RS03825 d72c1540e053ab0ea0fa877334fe6786 257 SUPERFAMILY SSF53850 30 249 9.12E-64 T 23-04-2016 RPE_RS03825 d72c1540e053ab0ea0fa877334fe6786 257 Gene3D G3DSA:3.40.190.10 7 115 4.9E-14 T 23-04-2016 RPE_RS03825 d72c1540e053ab0ea0fa877334fe6786 257 Gene3D G3DSA:3.40.190.10 212 249 4.9E-14 T 23-04-2016 RPE_RS03825 d72c1540e053ab0ea0fa877334fe6786 257 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 34 247 3.3E-77 T 23-04-2016 IPR005950 Molybdenum ABC transporter, periplasmic binding protein GO:0015412|GO:0015689|GO:0030288 RPE_RS03825 d72c1540e053ab0ea0fa877334fe6786 257 PANTHER PTHR30632 10 253 4.7E-43 T 23-04-2016 RPE_RS03825 d72c1540e053ab0ea0fa877334fe6786 257 PIRSF PIRSF004846 1 251 3.4E-57 T 23-04-2016 IPR005950 Molybdenum ABC transporter, periplasmic binding protein GO:0015412|GO:0015689|GO:0030288 RPE_RS00235 0ad8ce0f9b17280e92b2fb71b756ec4c 96 PANTHER PTHR33219 1 87 2.1E-18 T 23-04-2016 RPE_RS00235 0ad8ce0f9b17280e92b2fb71b756ec4c 96 Pfam PF02325 YGGT family 10 87 1.0E-21 T 23-04-2016 IPR003425 CCB3/YggT GO:0016020 RPE_RS02040 0014246999c954deeefd55dbd93f837e 406 PANTHER PTHR13789:SF5 7 401 2.4E-138 T 23-04-2016 RPE_RS02040 0014246999c954deeefd55dbd93f837e 406 PANTHER PTHR13789 7 401 2.4E-138 T 23-04-2016 RPE_RS02040 0014246999c954deeefd55dbd93f837e 406 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 296 309 - T 23-04-2016 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 UniPathway: UPA00232 RPE_RS02040 0014246999c954deeefd55dbd93f837e 406 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 297 313 7.4E-13 T 23-04-2016 RPE_RS02040 0014246999c954deeefd55dbd93f837e 406 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 282 297 7.4E-13 T 23-04-2016 RPE_RS02040 0014246999c954deeefd55dbd93f837e 406 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 7.4E-13 T 23-04-2016 RPE_RS02040 0014246999c954deeefd55dbd93f837e 406 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 158 173 7.4E-13 T 23-04-2016 RPE_RS02040 0014246999c954deeefd55dbd93f837e 406 Pfam PF01494 FAD binding domain 8 321 1.7E-29 T 23-04-2016 IPR002938 FAD-binding domain GO:0071949 RPE_RS02040 0014246999c954deeefd55dbd93f837e 406 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 7 392 6.3E-120 T 23-04-2016 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 UniPathway: UPA00232 RPE_RS02040 0014246999c954deeefd55dbd93f837e 406 SUPERFAMILY SSF51905 269 387 3.65E-55 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS02040 0014246999c954deeefd55dbd93f837e 406 SUPERFAMILY SSF51905 7 179 3.65E-55 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS02040 0014246999c954deeefd55dbd93f837e 406 Gene3D G3DSA:3.50.50.60 270 358 2.9E-41 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS02040 0014246999c954deeefd55dbd93f837e 406 Gene3D G3DSA:3.50.50.60 7 184 2.9E-41 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS08000 4b870f5d01c85db1daa2094c2f591b4f 79 Pfam PF07238 PilZ domain 4 78 1.6E-7 T 23-04-2016 IPR009875 PilZ domain GO:0035438 RPE_RS08000 4b870f5d01c85db1daa2094c2f591b4f 79 SUPERFAMILY SSF141371 1 78 4.32E-10 T 23-04-2016 RPE_RS00050 9495c7080b2bc0e25a32c781142a2f98 59 PANTHER PTHR41532 2 48 1.5E-16 T 23-04-2016 RPE_RS00050 9495c7080b2bc0e25a32c781142a2f98 59 Pfam PF03597 Cytochrome oxidase maturation protein cbb3-type 2 45 7.5E-19 T 23-04-2016 IPR004714 Cytochrome oxidase maturation protein cbb3-type RPE_RS00050 9495c7080b2bc0e25a32c781142a2f98 59 TIGRFAM TIGR00847 ccoS: cytochrome oxidase maturation protein, cbb3-type 1 48 1.1E-24 T 23-04-2016 IPR004714 Cytochrome oxidase maturation protein cbb3-type RPE_RS06445 db26630f80be2470ed021d03af856d21 278 SUPERFAMILY SSF53474 30 189 5.58E-17 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS06445 db26630f80be2470ed021d03af856d21 278 Pfam PF00561 alpha/beta hydrolase fold 145 185 3.3E-6 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS06445 db26630f80be2470ed021d03af856d21 278 Gene3D G3DSA:3.40.50.1820 63 180 3.0E-14 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS04345 122a5799df089cecc1746f70e2be7008 402 Gene3D G3DSA:1.20.1250.20 16 195 6.4E-13 T 23-04-2016 RPE_RS04345 122a5799df089cecc1746f70e2be7008 402 PANTHER PTHR11360:SF126 7 371 6.6E-56 T 23-04-2016 RPE_RS04345 122a5799df089cecc1746f70e2be7008 402 PANTHER PTHR11360 7 371 6.6E-56 T 23-04-2016 RPE_RS04345 122a5799df089cecc1746f70e2be7008 402 SUPERFAMILY SSF103473 13 397 3.27E-28 T 23-04-2016 IPR020846 Major facilitator superfamily domain RPE_RS04345 122a5799df089cecc1746f70e2be7008 402 Pfam PF07690 Major Facilitator Superfamily 24 347 1.3E-15 T 23-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RPE_RS20155 5d7c4e2ec4a92dc9d595b4716a864eb9 192 Pfam PF10074 Uncharacterized conserved protein (DUF2285) 80 182 1.7E-32 T 23-04-2016 IPR018754 Protein of unknown function DUF2285 RPE_RS01320 56624590726eeec385ce24195287c8be 142 PANTHER PTHR40257:SF2 3 142 3.3E-65 T 23-04-2016 RPE_RS01320 56624590726eeec385ce24195287c8be 142 Gene3D G3DSA:3.30.70.900 2 139 6.2E-51 T 23-04-2016 RPE_RS01320 56624590726eeec385ce24195287c8be 142 Pfam PF07045 Domain of unknown function (DUF1330) 43 121 1.9E-8 T 23-04-2016 IPR010753 Domain of unknown function DUF1330 RPE_RS01320 56624590726eeec385ce24195287c8be 142 SUPERFAMILY SSF54909 43 126 3.91E-19 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RPE_RS01320 56624590726eeec385ce24195287c8be 142 PANTHER PTHR40257 3 142 3.3E-65 T 23-04-2016 RPE_RS20025 baab0af969722a0e0092f43b5b3bb07f 444 PANTHER PTHR33803 9 433 1.8E-173 T 23-04-2016 RPE_RS20025 baab0af969722a0e0092f43b5b3bb07f 444 Pfam PF05598 Transposase domain (DUF772) 52 125 8.6E-18 T 23-04-2016 IPR008490 Transposase InsH, N-terminal RPE_RS20025 baab0af969722a0e0092f43b5b3bb07f 444 PANTHER PTHR33803:SF1 9 433 1.8E-173 T 23-04-2016 RPE_RS04035 8640755ba910a4a31ce386ae023c0657 329 SMART SM00116 10 58 0.012 T 23-04-2016 IPR000644 CBS domain RPE_RS04035 8640755ba910a4a31ce386ae023c0657 329 SMART SM00116 99 146 7.3E-11 T 23-04-2016 IPR000644 CBS domain RPE_RS04035 8640755ba910a4a31ce386ae023c0657 329 SUPERFAMILY SSF54631 1 147 1.52E-32 T 23-04-2016 RPE_RS04035 8640755ba910a4a31ce386ae023c0657 329 PANTHER PTHR11911 1 150 3.9E-31 T 23-04-2016 RPE_RS04035 8640755ba910a4a31ce386ae023c0657 329 Gene3D G3DSA:3.10.580.10 1 147 3.2E-33 T 23-04-2016 RPE_RS04035 8640755ba910a4a31ce386ae023c0657 329 Pfam PF00571 CBS domain 92 145 8.4E-12 T 23-04-2016 IPR000644 CBS domain RPE_RS04035 8640755ba910a4a31ce386ae023c0657 329 Pfam PF00571 CBS domain 3 54 1.2E-13 T 23-04-2016 IPR000644 CBS domain RPE_RS04430 23ebfbbd41bd8f176da3a9b53f276800 80 Pfam PF13773 Domain of unknown function (DUF4170) 5 72 1.2E-38 T 23-04-2016 IPR025226 Protein of unknown function DUF4170 RPE_RS00755 25552d8523200143e59aa78f3cff7292 279 Gene3D G3DSA:3.40.50.150 80 250 1.8E-23 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS00755 25552d8523200143e59aa78f3cff7292 279 PANTHER PTHR13090:SF3 9 279 1.5E-95 T 23-04-2016 RPE_RS00755 25552d8523200143e59aa78f3cff7292 279 SUPERFAMILY SSF53335 78 202 1.14E-17 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS00755 25552d8523200143e59aa78f3cff7292 279 PANTHER PTHR13090 9 279 1.5E-95 T 23-04-2016 RPE_RS00755 25552d8523200143e59aa78f3cff7292 279 Pfam PF08241 Methyltransferase domain 76 125 1.0E-7 T 23-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 RPE_RS07195 d2bc6b1c280a3b5f741a0397adf60d1d 171 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 16 162 20.116 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RPE_RS07195 d2bc6b1c280a3b5f741a0397adf60d1d 171 PANTHER PTHR21058 18 168 1.0E-28 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RPE_RS07195 d2bc6b1c280a3b5f741a0397adf60d1d 171 Gene3D G3DSA:3.40.50.960 19 162 1.8E-36 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RPE_RS07195 d2bc6b1c280a3b5f741a0397adf60d1d 171 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 22 156 1.4E-29 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RPE_RS07195 d2bc6b1c280a3b5f741a0397adf60d1d 171 SUPERFAMILY SSF52121 16 165 2.62E-37 T 23-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 RPE_RS16805 bac44b43e390982ebc0e642294aa38c1 88 SUPERFAMILY SSF81901 17 63 2.49E-6 T 23-04-2016 RPE_RS16805 bac44b43e390982ebc0e642294aa38c1 88 Gene3D G3DSA:1.25.40.10 18 71 3.5E-7 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS17405 41e1b52446334d655f937071062937c0 252 Gene3D G3DSA:2.40.10.10 53 113 2.2E-11 T 23-04-2016 RPE_RS17405 41e1b52446334d655f937071062937c0 252 SUPERFAMILY SSF50494 53 199 1.89E-22 T 23-04-2016 IPR009003 Peptidase S1, PA clan RPE_RS17405 41e1b52446334d655f937071062937c0 252 Pfam PF13365 Trypsin-like peptidase domain 60 193 3.0E-14 T 23-04-2016 RPE_RS15650 c606c15dd29bd735a8522cddd4109869 234 PIRSF PIRSF033328 5 233 5.9E-61 T 23-04-2016 IPR009389 Protein of unknown function DUF1045 KEGG: 00030+2.7.4.23|MetaCyc: PWY-5532|UniPathway: UPA00087 RPE_RS15650 c606c15dd29bd735a8522cddd4109869 234 TIGRFAM TIGR03223 Phn_opern_protn: putative phosphonate metabolism protein 6 229 1.6E-80 T 23-04-2016 IPR009389 Protein of unknown function DUF1045 KEGG: 00030+2.7.4.23|MetaCyc: PWY-5532|UniPathway: UPA00087 RPE_RS15650 c606c15dd29bd735a8522cddd4109869 234 Pfam PF06299 Protein of unknown function (DUF1045) 64 222 1.3E-56 T 23-04-2016 IPR009389 Protein of unknown function DUF1045 KEGG: 00030+2.7.4.23|MetaCyc: PWY-5532|UniPathway: UPA00087 RPE_RS22915 af40ea0302227521b41217500c0ad1b6 282 Pfam PF09955 Predicted integral membrane protein (DUF2189) 66 190 4.1E-36 T 23-04-2016 IPR018692 Predicted integral membrane protein DUF2189 RPE_RS07805 0d1a17ce5834ee4dbefa6e53b765d90c 141 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 94 137 2.0E-10 T 23-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RPE_RS07805 0d1a17ce5834ee4dbefa6e53b765d90c 141 PANTHER PTHR30435:SF2 6 140 1.5E-56 T 23-04-2016 RPE_RS07805 0d1a17ce5834ee4dbefa6e53b765d90c 141 Pfam PF00460 Flagella basal body rod protein 13 36 1.6E-4 T 23-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RPE_RS07805 0d1a17ce5834ee4dbefa6e53b765d90c 141 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 11 140 7.8E-44 T 23-04-2016 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 RPE_RS07805 0d1a17ce5834ee4dbefa6e53b765d90c 141 PANTHER PTHR30435 6 140 1.5E-56 T 23-04-2016 RPE_RS24695 1f123d5e93f7ff6d4b8428fe88d752c1 1067 PANTHER PTHR22576 4 385 7.6E-100 T 23-04-2016 RPE_RS24695 1f123d5e93f7ff6d4b8428fe88d752c1 1067 SUPERFAMILY SSF52129 10 253 1.5E-42 T 23-04-2016 IPR029030 Caspase-like domain RPE_RS24695 1f123d5e93f7ff6d4b8428fe88d752c1 1067 Gene3D G3DSA:3.40.50.1460 27 252 2.3E-11 T 23-04-2016 IPR029030 Caspase-like domain RPE_RS24695 1f123d5e93f7ff6d4b8428fe88d752c1 1067 PANTHER PTHR22576:SF30 4 385 7.6E-100 T 23-04-2016 RPE_RS24695 1f123d5e93f7ff6d4b8428fe88d752c1 1067 Pfam PF00656 Caspase domain 30 251 3.7E-27 T 23-04-2016 RPE_RS17830 e1f5d286ca3700dad38e570edafd4f6d 154 Gene3D G3DSA:3.90.1590.10 3 140 6.2E-33 T 23-04-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 RPE_RS17830 e1f5d286ca3700dad38e570edafd4f6d 154 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 30 117 2.0E-18 T 23-04-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 RPE_RS17830 e1f5d286ca3700dad38e570edafd4f6d 154 PANTHER PTHR33337 1 122 1.6E-21 T 23-04-2016 RPE_RS17830 e1f5d286ca3700dad38e570edafd4f6d 154 SUPERFAMILY SSF51316 7 126 2.72E-37 T 23-04-2016 IPR011057 Mss4-like RPE_RS03285 0be15ce7d687408a03ca510e957b0f00 395 PANTHER PTHR30563 44 365 1.5E-92 T 23-04-2016 RPE_RS03285 0be15ce7d687408a03ca510e957b0f00 395 Pfam PF02646 RmuC family 88 364 1.9E-58 T 23-04-2016 IPR003798 DNA recombination RmuC RPE_RS23885 1bdf08ea2b0f23dabd44a5e35832883c 127 Pfam PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter 64 116 1.5E-17 T 23-04-2016 IPR032820 Putative F0F1-ATPase subunit, Ca2+/Mg2+ transporter RPE_RS20385 90611c09c0f15e9ef53bf6e3c6fa8190 645 Pfam PF05170 AsmA family 1 213 1.1E-15 T 23-04-2016 IPR007844 AsmA RPE_RS20385 90611c09c0f15e9ef53bf6e3c6fa8190 645 PANTHER PTHR30441:SF2 1 645 5.6E-87 T 23-04-2016 RPE_RS20385 90611c09c0f15e9ef53bf6e3c6fa8190 645 PANTHER PTHR30441 1 645 5.6E-87 T 23-04-2016 RPE_RS20385 90611c09c0f15e9ef53bf6e3c6fa8190 645 Pfam PF13502 AsmA-like C-terminal region 377 560 1.6E-21 T 23-04-2016 IPR032712 AsmA-like, C-terminal RPE_RS07835 ffa1d1633beb948f18f3bb8c149fdb6c 264 SMART SM00901 35 129 1.4E-36 T 23-04-2016 IPR014966 FRG domain RPE_RS07835 ffa1d1633beb948f18f3bb8c149fdb6c 264 Pfam PF08867 FRG domain 38 120 7.3E-23 T 23-04-2016 IPR014966 FRG domain RPE_RS13065 cc413f036920860576bf3b9a362c520b 532 Pfam PF05199 GMC oxidoreductase 388 522 4.4E-33 T 23-04-2016 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 RPE_RS13065 cc413f036920860576bf3b9a362c520b 532 Pfam PF00732 GMC oxidoreductase 25 319 2.5E-69 T 23-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 RPE_RS13065 cc413f036920860576bf3b9a362c520b 532 SUPERFAMILY SSF51905 471 530 2.27E-75 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS13065 cc413f036920860576bf3b9a362c520b 532 SUPERFAMILY SSF51905 23 312 2.27E-75 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS13065 cc413f036920860576bf3b9a362c520b 532 SUPERFAMILY SSF54373 314 472 9.61E-28 T 23-04-2016 RPE_RS13065 cc413f036920860576bf3b9a362c520b 532 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 278 292 - T 23-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 RPE_RS13065 cc413f036920860576bf3b9a362c520b 532 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 101 124 - T 23-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 RPE_RS13065 cc413f036920860576bf3b9a362c520b 532 Gene3D G3DSA:3.50.50.60 465 529 3.0E-110 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS13065 cc413f036920860576bf3b9a362c520b 532 Gene3D G3DSA:3.50.50.60 211 337 3.0E-110 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS13065 cc413f036920860576bf3b9a362c520b 532 Gene3D G3DSA:3.50.50.60 23 146 3.0E-110 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS13065 cc413f036920860576bf3b9a362c520b 532 PANTHER PTHR11552 1 528 2.8E-158 T 23-04-2016 RPE_RS09120 db3d25c6a4e26fd5753c88c486a6ec1e 292 TIGRFAM TIGR03464 HpnC: squalene synthase HpnC 11 269 4.7E-83 T 23-04-2016 IPR017827 Squalene synthase HpnC RPE_RS09120 db3d25c6a4e26fd5753c88c486a6ec1e 292 PANTHER PTHR31480 1 292 1.0E-93 T 23-04-2016 RPE_RS09120 db3d25c6a4e26fd5753c88c486a6ec1e 292 PANTHER PTHR31480:SF8 1 292 1.0E-93 T 23-04-2016 RPE_RS09120 db3d25c6a4e26fd5753c88c486a6ec1e 292 SUPERFAMILY SSF48576 13 277 3.88E-56 T 23-04-2016 IPR008949 Isoprenoid synthase domain RPE_RS09120 db3d25c6a4e26fd5753c88c486a6ec1e 292 Pfam PF00494 Squalene/phytoene synthase 13 260 3.4E-46 T 23-04-2016 IPR002060 Squalene/phytoene synthase GO:0009058|GO:0016740 RPE_RS09120 db3d25c6a4e26fd5753c88c486a6ec1e 292 Gene3D G3DSA:1.10.600.10 16 263 4.0E-42 T 23-04-2016 IPR008949 Isoprenoid synthase domain RPE_RS13305 5ef50952c53a44d365e7c06ceb0aff69 67 Gene3D G3DSA:3.30.420.10 1 34 9.8E-8 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RPE_RS13305 5ef50952c53a44d365e7c06ceb0aff69 67 SUPERFAMILY SSF53098 1 38 7.44E-8 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RPE_RS13305 5ef50952c53a44d365e7c06ceb0aff69 67 Pfam PF13683 Integrase core domain 4 40 1.9E-14 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 RPE_RS03595 164c2d9ff94312cf8334ec4809111e06 208 Gene3D G3DSA:1.10.260.40 5 72 5.6E-7 T 23-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RPE_RS03595 164c2d9ff94312cf8334ec4809111e06 208 SUPERFAMILY SSF51306 83 206 1.14E-24 T 23-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C RPE_RS03595 164c2d9ff94312cf8334ec4809111e06 208 Gene3D G3DSA:2.10.109.10 119 206 6.0E-22 T 23-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain RPE_RS03595 164c2d9ff94312cf8334ec4809111e06 208 Pfam PF00717 Peptidase S24-like 126 192 3.2E-17 T 23-04-2016 IPR019759 Peptidase S24/S26A/S26B RPE_RS18120 da82143984863474c33bb5f2bfc965b2 353 Gene3D G3DSA:3.90.1200.10 138 327 2.0E-29 T 23-04-2016 RPE_RS18120 da82143984863474c33bb5f2bfc965b2 353 Pfam PF01636 Phosphotransferase enzyme family 45 265 1.5E-55 T 23-04-2016 IPR002575 Aminoglycoside phosphotransferase RPE_RS18120 da82143984863474c33bb5f2bfc965b2 353 SUPERFAMILY SSF56112 24 346 1.05E-58 T 23-04-2016 IPR011009 Protein kinase-like domain RPE_RS20420 969429df3c6f024b8a7732ac8174b7a6 61 Pfam PF04325 Protein of unknown function (DUF465) 9 52 4.4E-10 T 23-04-2016 IPR007420 Protein of unknown function DUF465 RPE_RS13455 5138677271fcebac0508cdd12d610d31 291 PANTHER PTHR10285 1 286 3.4E-129 T 23-04-2016 RPE_RS13455 5138677271fcebac0508cdd12d610d31 291 PRINTS PR00478 Phosphoribulokinase family signature 183 206 6.1E-37 T 23-04-2016 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723|UniPathway: UPA00116 RPE_RS13455 5138677271fcebac0508cdd12d610d31 291 PRINTS PR00478 Phosphoribulokinase family signature 127 145 6.1E-37 T 23-04-2016 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723|UniPathway: UPA00116 RPE_RS13455 5138677271fcebac0508cdd12d610d31 291 PRINTS PR00478 Phosphoribulokinase family signature 165 182 6.1E-37 T 23-04-2016 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723|UniPathway: UPA00116 RPE_RS13455 5138677271fcebac0508cdd12d610d31 291 PRINTS PR00478 Phosphoribulokinase family signature 12 29 6.1E-37 T 23-04-2016 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723|UniPathway: UPA00116 RPE_RS13455 5138677271fcebac0508cdd12d610d31 291 Gene3D G3DSA:3.40.50.300 1 288 3.4E-129 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS13455 5138677271fcebac0508cdd12d610d31 291 ProSitePatterns PS00567 Phosphoribulokinase signature. 165 178 - T 23-04-2016 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723|UniPathway: UPA00116 RPE_RS13455 5138677271fcebac0508cdd12d610d31 291 PANTHER PTHR10285:SF72 1 286 3.4E-129 T 23-04-2016 RPE_RS13455 5138677271fcebac0508cdd12d610d31 291 SUPERFAMILY SSF52540 3 287 3.36E-45 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS13455 5138677271fcebac0508cdd12d610d31 291 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 7 215 5.2E-81 T 23-04-2016 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0008152|GO:0016301 RPE_RS04370 10cf013afedc62c3971e85117ac7359c 276 Pfam PF09849 Uncharacterized protein conserved in bacteria (DUF2076) 1 266 4.7E-62 T 23-04-2016 IPR018648 Protein of unknown function DUF2076 RPE_RS10770 0bd02975b47dbdfb36165fc7c8794dbd 332 SUPERFAMILY SSF53850 121 291 1.88E-11 T 23-04-2016 RPE_RS10770 0bd02975b47dbdfb36165fc7c8794dbd 332 PANTHER PTHR30349:SF1 29 294 7.1E-93 T 23-04-2016 RPE_RS10770 0bd02975b47dbdfb36165fc7c8794dbd 332 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 55 329 1.4E-70 T 23-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RPE_RS10770 0bd02975b47dbdfb36165fc7c8794dbd 332 PIRSF PIRSF017082 1 332 5.8E-71 T 23-04-2016 IPR005064 Bordetella uptake gene GO:0030288 RPE_RS10770 0bd02975b47dbdfb36165fc7c8794dbd 332 PANTHER PTHR30349 29 294 7.1E-93 T 23-04-2016 RPE_RS17795 462e78638be4e5bfe0aca647ca22609b 212 Pfam PF13649 Methyltransferase domain 79 147 2.8E-9 T 23-04-2016 RPE_RS17795 462e78638be4e5bfe0aca647ca22609b 212 SUPERFAMILY SSF53335 16 166 5.48E-20 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS17795 462e78638be4e5bfe0aca647ca22609b 212 Gene3D G3DSA:3.40.50.150 50 157 3.6E-17 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS01295 df5f7bec4be961543c0c63597cb4564c 176 TIGRFAM TIGR01749 fabA: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 4 170 7.7E-90 T 23-04-2016 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RPE_RS01295 df5f7bec4be961543c0c63597cb4564c 176 Pfam PF07977 FabA-like domain 29 159 2.1E-49 T 23-04-2016 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 RPE_RS01295 df5f7bec4be961543c0c63597cb4564c 176 Hamap MF_00405 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase [fabA]. 2 173 50.963 T 23-04-2016 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RPE_RS01295 df5f7bec4be961543c0c63597cb4564c 176 Gene3D G3DSA:3.10.129.10 2 169 2.2E-56 T 23-04-2016 IPR029069 HotDog domain RPE_RS01295 df5f7bec4be961543c0c63597cb4564c 176 SUPERFAMILY SSF54637 4 169 2.14E-54 T 23-04-2016 IPR029069 HotDog domain RPE_RS16820 6333fce100404900bedfd1f5fffc325f 461 Pfam PF01734 Patatin-like phospholipase 57 292 5.2E-19 T 23-04-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 RPE_RS16820 6333fce100404900bedfd1f5fffc325f 461 Gene3D G3DSA:3.40.1090.10 49 121 6.8E-13 T 23-04-2016 RPE_RS16820 6333fce100404900bedfd1f5fffc325f 461 SUPERFAMILY SSF52151 280 369 3.4E-29 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RPE_RS16820 6333fce100404900bedfd1f5fffc325f 461 SUPERFAMILY SSF52151 53 230 3.4E-29 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RPE_RS23640 289bd1d638f7d22702c8bb4317269650 358 PANTHER PTHR40253 1 357 1.7E-93 T 23-04-2016 RPE_RS23640 289bd1d638f7d22702c8bb4317269650 358 Pfam PF10098 Uncharacterised protein conserved in bacteria (DUF2336) 92 349 8.4E-59 T 23-04-2016 IPR019285 Protein of unknown function DUF2336 RPE_RS03240 18fa393483dfce533deec7c445c9d106 333 Gene3D G3DSA:1.10.101.10 146 208 1.9E-7 T 23-04-2016 IPR002477 Peptidoglycan binding-like RPE_RS03240 18fa393483dfce533deec7c445c9d106 333 Pfam PF06282 Protein of unknown function (DUF1036) 22 126 1.0E-22 T 23-04-2016 IPR009380 Protein of unknown function DUF1036 RPE_RS03240 18fa393483dfce533deec7c445c9d106 333 Pfam PF06282 Protein of unknown function (DUF1036) 213 329 5.6E-30 T 23-04-2016 IPR009380 Protein of unknown function DUF1036 RPE_RS03240 18fa393483dfce533deec7c445c9d106 333 SUPERFAMILY SSF47090 143 204 5.49E-8 T 23-04-2016 IPR002477 Peptidoglycan binding-like RPE_RS02145 c0b742724a71941b59faeab6926de54c 220 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 63 193 8.5E-9 T 23-04-2016 IPR010664 Lipopolysaccharide assembly, LptC-related RPE_RS13030 109fbcf95124b83e31adb0ef8f12ce87 91 Pfam PF14384 BrnA antitoxin of type II toxin-antitoxin system 13 86 4.0E-24 T 23-04-2016 IPR025528 BrnA antitoxin of type II toxin-antitoxin system RPE_RS20920 9a918086180f143427e2903e0130824f 235 SUPERFAMILY SSF47616 78 207 5.32E-35 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RPE_RS20920 9a918086180f143427e2903e0130824f 235 Pfam PF00043 Glutathione S-transferase, C-terminal domain 134 196 8.9E-9 T 23-04-2016 IPR004046 Glutathione S-transferase, C-terminal RPE_RS20920 9a918086180f143427e2903e0130824f 235 PANTHER PTHR11260:SF178 2 200 1.1E-64 T 23-04-2016 RPE_RS20920 9a918086180f143427e2903e0130824f 235 SUPERFAMILY SSF52833 1 84 1.66E-21 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS20920 9a918086180f143427e2903e0130824f 235 Pfam PF02798 Glutathione S-transferase, N-terminal domain 4 80 1.8E-13 T 23-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RPE_RS20920 9a918086180f143427e2903e0130824f 235 PANTHER PTHR11260 2 200 1.1E-64 T 23-04-2016 RPE_RS20920 9a918086180f143427e2903e0130824f 235 Gene3D G3DSA:1.20.1050.10 84 200 5.9E-49 T 23-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RPE_RS20920 9a918086180f143427e2903e0130824f 235 Gene3D G3DSA:3.40.30.10 1 83 1.9E-27 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS00205 0bd0b66422b95c481fcf68f66484f262 169 Gene3D G3DSA:3.40.630.30 5 167 5.0E-45 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS00205 0bd0b66422b95c481fcf68f66484f262 169 Pfam PF00583 Acetyltransferase (GNAT) family 67 144 2.3E-12 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RPE_RS00205 0bd0b66422b95c481fcf68f66484f262 169 SUPERFAMILY SSF55729 1 148 4.8E-26 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS00205 0bd0b66422b95c481fcf68f66484f262 169 PANTHER PTHR23091 6 144 2.8E-16 T 23-04-2016 RPE_RS01645 d28bc04f30e8b24878c5f05267f83b86 110 Gene3D G3DSA:3.30.1320.10 3 84 3.1E-32 T 23-04-2016 IPR023803 Ribosomal protein S16 domain RPE_RS01645 d28bc04f30e8b24878c5f05267f83b86 110 Pfam PF00886 Ribosomal protein S16 9 70 8.5E-25 T 23-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS01645 d28bc04f30e8b24878c5f05267f83b86 110 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 2 80 23.309 T 23-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS01645 d28bc04f30e8b24878c5f05267f83b86 110 PANTHER PTHR12919 2 110 4.1E-41 T 23-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS01645 d28bc04f30e8b24878c5f05267f83b86 110 SUPERFAMILY SSF54565 3 86 4.19E-30 T 23-04-2016 IPR023803 Ribosomal protein S16 domain RPE_RS01645 d28bc04f30e8b24878c5f05267f83b86 110 TIGRFAM TIGR00002 S16: ribosomal protein bS16 3 83 7.2E-30 T 23-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RPE_RS05585 36e22f2311bdd42a8b6b773234d3885b 449 Pfam PF13440 Polysaccharide biosynthesis protein 32 325 3.7E-37 T 23-04-2016 RPE_RS19165 2de0ce6a8750c2b7459ba079c7797968 310 SUPERFAMILY SSF53850 94 296 5.12E-43 T 23-04-2016 RPE_RS19165 2de0ce6a8750c2b7459ba079c7797968 310 Gene3D G3DSA:3.40.190.10 95 194 1.8E-39 T 23-04-2016 RPE_RS19165 2de0ce6a8750c2b7459ba079c7797968 310 SUPERFAMILY SSF46785 3 85 6.06E-23 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS19165 2de0ce6a8750c2b7459ba079c7797968 310 Pfam PF03466 LysR substrate binding domain 93 295 7.9E-42 T 23-04-2016 IPR005119 LysR, substrate-binding RPE_RS19165 2de0ce6a8750c2b7459ba079c7797968 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 1.3E-20 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS19165 2de0ce6a8750c2b7459ba079c7797968 310 Gene3D G3DSA:1.10.10.10 2 86 2.0E-28 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS19165 2de0ce6a8750c2b7459ba079c7797968 310 PANTHER PTHR30537 1 297 8.0E-128 T 23-04-2016 RPE_RS19165 2de0ce6a8750c2b7459ba079c7797968 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 2.0E-11 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS19165 2de0ce6a8750c2b7459ba079c7797968 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 2.0E-11 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS19165 2de0ce6a8750c2b7459ba079c7797968 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 2.0E-11 T 23-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RPE_RS19165 2de0ce6a8750c2b7459ba079c7797968 310 PANTHER PTHR30537:SF26 1 297 8.0E-128 T 23-04-2016 RPE_RS03505 c06638f3c8eb588b8e2e4f6a70deca55 209 PIRSF PIRSF006324 1 209 9.6E-56 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RPE_RS03505 c06638f3c8eb588b8e2e4f6a70deca55 209 PANTHER PTHR30086:SF2 2 207 9.3E-74 T 23-04-2016 RPE_RS03505 c06638f3c8eb588b8e2e4f6a70deca55 209 PANTHER PTHR30086 2 207 9.3E-74 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RPE_RS03505 c06638f3c8eb588b8e2e4f6a70deca55 209 Pfam PF01810 LysE type translocator 17 207 1.1E-35 T 23-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RPE_RS10260 b45f0bfcd2bfa473c11681f18bdb0381 66 SUPERFAMILY SSF57997 16 65 7.85E-5 T 23-04-2016 RPE_RS07225 c364bf75905d9d1ac3bd760298656623 93 Pfam PF04380 Membrane fusogenic activity 4 79 1.8E-25 T 23-04-2016 IPR007475 Membrane fusogenic activity RPE_RS11820 063723470407e10fe1ddbcdc073ccc6f 391 PIRSF PIRSF035865 1 380 7.9E-139 T 23-04-2016 IPR014598 Uncharacterised conserved protein UCP035865 RPE_RS11820 063723470407e10fe1ddbcdc073ccc6f 391 Pfam PF10098 Uncharacterised protein conserved in bacteria (DUF2336) 86 344 3.4E-72 T 23-04-2016 IPR019285 Protein of unknown function DUF2336 RPE_RS24560 511fd56d48d46475fbbbee6fc2cdc6bc 92 Pfam PF12071 Protein of unknown function (DUF3551) 1 73 3.0E-19 T 23-04-2016 IPR021937 Protein of unknown function DUF3551 RPE_RS03070 7dace19cc2160689215a92299ebc347f 258 Gene3D G3DSA:3.90.226.10 5 255 1.0E-92 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS03070 7dace19cc2160689215a92299ebc347f 258 PANTHER PTHR11941 6 255 6.8E-109 T 23-04-2016 RPE_RS03070 7dace19cc2160689215a92299ebc347f 258 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 99 119 - T 23-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 RPE_RS03070 7dace19cc2160689215a92299ebc347f 258 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 256 9.0E-75 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RPE_RS03070 7dace19cc2160689215a92299ebc347f 258 PANTHER PTHR11941:SF54 6 255 6.8E-109 T 23-04-2016 RPE_RS03070 7dace19cc2160689215a92299ebc347f 258 SUPERFAMILY SSF52096 4 257 2.75E-88 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS15365 3527c20221d7f3888892bc425520800a 224 Pfam PF04012 PspA/IM30 family 5 177 3.4E-13 T 23-04-2016 IPR007157 PspA/IM30 RPE_RS06820 7c89b2e2f511ac938ac7b4a523c85616 220 Pfam PF03703 Bacterial PH domain 93 182 7.6E-16 T 23-04-2016 IPR005182 Domain of unknown function DUF304 RPE_RS12775 629556257ee7979a088ae7964bbff766 83 Pfam PF12071 Protein of unknown function (DUF3551) 10 73 4.8E-16 T 23-04-2016 IPR021937 Protein of unknown function DUF3551 RPE_RS09550 223b159d5d94ba9fccaf0a762e931fb3 208 TIGRFAM TIGR01543 proheadase_HK97: phage prohead protease, HK97 family 19 152 6.9E-30 T 23-04-2016 IPR006433 Prohead protease RPE_RS09550 223b159d5d94ba9fccaf0a762e931fb3 208 Pfam PF04586 Caudovirus prohead serine protease 16 152 7.5E-39 T 23-04-2016 IPR006433 Prohead protease RPE_RS09550 223b159d5d94ba9fccaf0a762e931fb3 208 Gene3D G3DSA:3.20.16.10 19 83 1.9E-4 T 23-04-2016 RPE_RS09550 223b159d5d94ba9fccaf0a762e931fb3 208 SUPERFAMILY SSF50789 19 143 1.83E-7 T 23-04-2016 RPE_RS23510 303281c163125654fb563e611e1c2362 236 Gene3D G3DSA:3.40.630.30 27 147 7.2E-8 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS23510 303281c163125654fb563e611e1c2362 236 SUPERFAMILY SSF55729 26 220 4.5E-22 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS18210 fb6f440f0889be491c1152439be37f33 693 PANTHER PTHR32089 629 691 8.6E-32 T 23-04-2016 RPE_RS18210 fb6f440f0889be491c1152439be37f33 693 PANTHER PTHR32089 98 317 8.6E-32 T 23-04-2016 RPE_RS18210 fb6f440f0889be491c1152439be37f33 693 Gene3D G3DSA:1.10.287.950 638 688 1.2E-34 T 23-04-2016 RPE_RS18210 fb6f440f0889be491c1152439be37f33 693 Gene3D G3DSA:1.10.287.950 119 375 1.3E-32 T 23-04-2016 RPE_RS18210 fb6f440f0889be491c1152439be37f33 693 Gene3D G3DSA:1.10.287.950 435 595 1.2E-34 T 23-04-2016 RPE_RS18210 fb6f440f0889be491c1152439be37f33 693 SUPERFAMILY SSF58104 106 386 2.96E-41 T 23-04-2016 RPE_RS18210 fb6f440f0889be491c1152439be37f33 693 SUPERFAMILY SSF58104 406 690 1.13E-43 T 23-04-2016 RPE_RS18210 fb6f440f0889be491c1152439be37f33 693 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 494 679 4.4E-24 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS18210 fb6f440f0889be491c1152439be37f33 693 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 179 376 8.4E-29 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS18210 fb6f440f0889be491c1152439be37f33 693 SMART SM00283 124 385 1.1E-24 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS18210 fb6f440f0889be491c1152439be37f33 693 SMART SM00283 407 689 3.0E-10 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS15680 a23f97b795367d1ea9493b8f9280c589 108 Pfam PF04071 Cysteine-rich small domain 13 73 5.9E-13 T 23-04-2016 IPR007212 Cysteine-rich small domain RPE_RS21230 ce07d80b95da3e6e714f6aef85d41ddd 276 PANTHER PTHR30413:SF8 9 276 7.7E-55 T 23-04-2016 RPE_RS21230 ce07d80b95da3e6e714f6aef85d41ddd 276 Pfam PF01061 ABC-2 type transporter 33 236 4.2E-19 T 23-04-2016 IPR013525 ABC-2 type transporter GO:0016020 RPE_RS21230 ce07d80b95da3e6e714f6aef85d41ddd 276 PANTHER PTHR30413 9 276 7.7E-55 T 23-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RPE_RS24770 94b632a02bd035d4deaa24c2b80058fe 449 SUPERFAMILY SSF103190 295 416 7.32E-6 T 23-04-2016 IPR029151 Periplasmic sensor domain-like RPE_RS22250 a77d14c408794c72a4603c1a46d9fe71 253 SMART SM00028 105 138 0.038 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS22250 a77d14c408794c72a4603c1a46d9fe71 253 SMART SM00028 71 104 0.018 T 23-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RPE_RS22250 a77d14c408794c72a4603c1a46d9fe71 253 Gene3D G3DSA:1.25.40.10 42 155 3.3E-18 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS22250 a77d14c408794c72a4603c1a46d9fe71 253 SUPERFAMILY SSF48452 47 153 3.7E-18 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS13560 830c223e7b8de6fa01227c0fb1df2a40 255 Gene3D G3DSA:3.40.1210.10 1 251 1.6E-76 T 23-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 RPE_RS13560 830c223e7b8de6fa01227c0fb1df2a40 255 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 1 241 2.8E-60 T 23-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 RPE_RS13560 830c223e7b8de6fa01227c0fb1df2a40 255 PANTHER PTHR30457 1 255 2.4E-83 T 23-04-2016 RPE_RS13560 830c223e7b8de6fa01227c0fb1df2a40 255 Pfam PF01975 Survival protein SurE 3 188 2.2E-51 T 23-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 RPE_RS13560 830c223e7b8de6fa01227c0fb1df2a40 255 SUPERFAMILY SSF64167 1 253 2.49E-76 T 23-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 RPE_RS13560 830c223e7b8de6fa01227c0fb1df2a40 255 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 254 33.975 T 23-04-2016 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 RPE_RS19810 bff06c224ddcce7502e041e3d0c4235f 138 Pfam PF07681 DoxX 15 91 1.1E-7 T 23-04-2016 IPR032808 DoxX family RPE_RS19810 bff06c224ddcce7502e041e3d0c4235f 138 PANTHER PTHR33452:SF4 8 138 6.9E-49 T 23-04-2016 RPE_RS19810 bff06c224ddcce7502e041e3d0c4235f 138 PANTHER PTHR33452 8 138 6.9E-49 T 23-04-2016 RPE_RS05185 c84fe73d079d3d8c44aa452ba89a7371 71 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 5 55 2.7E-18 T 23-04-2016 IPR010260 Prophage CP4-57 regulatory protein (AlpA) RPE_RS05185 c84fe73d079d3d8c44aa452ba89a7371 71 PANTHER PTHR36154 3 69 1.4E-14 T 23-04-2016 RPE_RS07675 c716859e88b2e1b55303bf63be81c0c3 125 Pfam PF07378 Flagellar protein FlbT 3 124 7.8E-41 T 23-04-2016 IPR009967 Flagellum biosynthesis repressor FlbT GO:0006402|GO:0048027|GO:1902209 RPE_RS23680 74581585a6e59904d2975c19e72c5690 325 PANTHER PTHR30217 1 218 1.1E-150 T 23-04-2016 RPE_RS23680 74581585a6e59904d2975c19e72c5690 325 PANTHER PTHR30217 240 325 1.1E-150 T 23-04-2016 RPE_RS23680 74581585a6e59904d2975c19e72c5690 325 PANTHER PTHR30217:SF3 1 218 1.1E-150 T 23-04-2016 RPE_RS23680 74581585a6e59904d2975c19e72c5690 325 PANTHER PTHR30217:SF3 240 325 1.1E-150 T 23-04-2016 RPE_RS23680 74581585a6e59904d2975c19e72c5690 325 Pfam PF01136 Peptidase family U32 76 323 8.1E-61 T 23-04-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- RPE_RS14240 47ac7e8e90fa27880aecd37f4014c535 100 Pfam PF03367 ZPR1 zinc-finger domain 33 98 7.8E-5 T 23-04-2016 IPR004457 Zinc finger, ZPR1-type GO:0008270 RPE_RS11645 75a854eb5e5521fe8a7665ec520f2a2e 179 SUPERFAMILY SSF46785 28 165 6.13E-22 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS11645 75a854eb5e5521fe8a7665ec520f2a2e 179 PANTHER PTHR33164 29 177 2.9E-24 T 23-04-2016 RPE_RS11645 75a854eb5e5521fe8a7665ec520f2a2e 179 SMART SM00347 50 153 6.4E-8 T 23-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RPE_RS11645 75a854eb5e5521fe8a7665ec520f2a2e 179 PANTHER PTHR33164:SF1 29 177 2.9E-24 T 23-04-2016 RPE_RS11645 75a854eb5e5521fe8a7665ec520f2a2e 179 Gene3D G3DSA:1.10.10.10 27 165 4.5E-21 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS21540 8fdf510ff178afe25f91f96f86221697 268 Gene3D G3DSA:3.40.50.720 1 201 5.7E-47 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS21540 8fdf510ff178afe25f91f96f86221697 268 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 23-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RPE_RS21540 8fdf510ff178afe25f91f96f86221697 268 SUPERFAMILY SSF51735 1 246 4.89E-50 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS21540 8fdf510ff178afe25f91f96f86221697 268 Pfam PF00106 short chain dehydrogenase 6 198 1.8E-35 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS21540 8fdf510ff178afe25f91f96f86221697 268 PANTHER PTHR24322 155 186 1.3E-42 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS21540 8fdf510ff178afe25f91f96f86221697 268 PANTHER PTHR24322 10 139 1.3E-42 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS21540 8fdf510ff178afe25f91f96f86221697 268 PANTHER PTHR24322:SF329 155 186 1.3E-42 T 23-04-2016 RPE_RS21540 8fdf510ff178afe25f91f96f86221697 268 PANTHER PTHR24322:SF329 10 139 1.3E-42 T 23-04-2016 RPE_RS21540 8fdf510ff178afe25f91f96f86221697 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 1.3E-19 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS21540 8fdf510ff178afe25f91f96f86221697 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 1.3E-19 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS21540 8fdf510ff178afe25f91f96f86221697 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.3E-19 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS21540 8fdf510ff178afe25f91f96f86221697 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 1.3E-19 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS21540 8fdf510ff178afe25f91f96f86221697 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 1.3E-19 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS15550 3fa64ac70a45c46f705bd9a43c53c0fd 275 PANTHER PTHR30294 1 275 2.0E-82 T 23-04-2016 RPE_RS15550 3fa64ac70a45c46f705bd9a43c53c0fd 275 PANTHER PTHR30294:SF26 1 275 2.0E-82 T 23-04-2016 RPE_RS15550 3fa64ac70a45c46f705bd9a43c53c0fd 275 Pfam PF12679 ABC-2 family transporter protein 6 275 7.2E-43 T 23-04-2016 IPR032688 ABC-2 family transporter protein GO:0006810 RPE_RS08820 f865775250167e0e227ea63693fc2733 372 Pfam PF01594 Domain of unknown function DUF20 39 359 4.1E-38 T 23-04-2016 IPR002549 Transmembrane protein TqsA-like RPE_RS08820 f865775250167e0e227ea63693fc2733 372 PANTHER PTHR21716 19 369 1.3E-96 T 23-04-2016 IPR002549 Transmembrane protein TqsA-like RPE_RS08820 f865775250167e0e227ea63693fc2733 372 PANTHER PTHR21716:SF16 19 369 1.3E-96 T 23-04-2016 RPE_RS10490 8259880f04eec88ba8d265d1626e100a 397 Pfam PF06904 Extensin-like protein C-terminus 206 347 2.3E-51 T 23-04-2016 IPR009683 Extensin-like, C-terminal RPE_RS15300 68a9b16d2cad4bddac7396d807b87eba 334 Pfam PF01384 Phosphate transporter family 24 165 4.1E-37 T 23-04-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 RPE_RS15300 68a9b16d2cad4bddac7396d807b87eba 334 Pfam PF01384 Phosphate transporter family 171 323 1.3E-53 T 23-04-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 RPE_RS15300 68a9b16d2cad4bddac7396d807b87eba 334 PANTHER PTHR11101 9 333 2.1E-100 T 23-04-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 RPE_RS14820 7587f2df30bc65a9bab6c6002ec4b0b9 179 Pfam PF10634 Fe2+ transport protein 22 172 2.6E-64 T 23-04-2016 IPR018470 Periplasmic metal-binding protein Tp34-type RPE_RS14820 7587f2df30bc65a9bab6c6002ec4b0b9 179 PIRSF PIRSF017018 1 179 5.5E-79 T 23-04-2016 IPR018470 Periplasmic metal-binding protein Tp34-type RPE_RS06970 d9808e0664082e90391ed9b93c7067de 598 SUPERFAMILY SSF53850 77 526 4.86E-52 T 23-04-2016 RPE_RS06970 d9808e0664082e90391ed9b93c7067de 598 Gene3D G3DSA:3.40.190.10 211 452 7.1E-38 T 23-04-2016 RPE_RS06970 d9808e0664082e90391ed9b93c7067de 598 PIRSF PIRSF035859 7 591 0.0 T 23-04-2016 IPR014597 ABC transporter, periplasmic substrate-binding protein GO:0005215 RPE_RS06970 d9808e0664082e90391ed9b93c7067de 598 Gene3D G3DSA:3.40.190.10 92 210 6.0E-9 T 23-04-2016 RPE_RS06925 88dec42690814bc4c77e52540380fcba 203 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 58 4.7E-11 T 23-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RPE_RS06925 88dec42690814bc4c77e52540380fcba 203 PANTHER PTHR30055 1 198 3.1E-69 T 23-04-2016 RPE_RS06925 88dec42690814bc4c77e52540380fcba 203 SUPERFAMILY SSF46689 7 88 1.59E-15 T 23-04-2016 IPR009057 Homeodomain-like GO:0003677 RPE_RS06925 88dec42690814bc4c77e52540380fcba 203 Gene3D G3DSA:1.10.357.10 11 195 1.8E-30 T 23-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 RPE_RS06925 88dec42690814bc4c77e52540380fcba 203 PANTHER PTHR30055:SF60 1 198 3.1E-69 T 23-04-2016 RPE_RS06925 88dec42690814bc4c77e52540380fcba 203 SUPERFAMILY SSF48498 90 198 3.37E-7 T 23-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RPE_RS22725 9c2c9adf88826377da51c472de66f24c 73 Pfam PF11373 Protein of unknown function (DUF3175) 1 72 5.5E-34 T 23-04-2016 IPR021513 Ralstonia phage RSL1, Orf186 RPE_RS23845 a8ac6562a30bb6d5fe885b70763fb026 584 SUPERFAMILY SSF58104 53 303 7.98E-49 T 23-04-2016 RPE_RS23845 a8ac6562a30bb6d5fe885b70763fb026 584 PANTHER PTHR32089 55 312 2.4E-52 T 23-04-2016 RPE_RS23845 a8ac6562a30bb6d5fe885b70763fb026 584 Gene3D G3DSA:1.10.287.950 71 279 7.7E-42 T 23-04-2016 RPE_RS23845 a8ac6562a30bb6d5fe885b70763fb026 584 SMART SM00283 55 309 2.0E-29 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS23845 a8ac6562a30bb6d5fe885b70763fb026 584 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 118 305 3.7E-31 T 23-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 RPE_RS05090 fc0ed4b7532121b66ccc5cedf5ebfc21 268 Pfam PF01610 Transposase 123 258 1.5E-8 T 23-04-2016 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain RPE_RS00230 8b04f023e3beca0fea83e0276156da89 108 SUPERFAMILY SSF69786 3 101 1.2E-22 T 23-04-2016 IPR003746 Protein of unknown function DUF167 RPE_RS00230 8b04f023e3beca0fea83e0276156da89 108 Pfam PF02594 Uncharacterised ACR, YggU family COG1872 11 87 5.9E-23 T 23-04-2016 IPR003746 Protein of unknown function DUF167 RPE_RS00230 8b04f023e3beca0fea83e0276156da89 108 SMART SM01152 8 89 1.9E-32 T 23-04-2016 IPR003746 Protein of unknown function DUF167 RPE_RS00230 8b04f023e3beca0fea83e0276156da89 108 Gene3D G3DSA:3.30.1200.10 4 92 8.1E-22 T 23-04-2016 IPR003746 Protein of unknown function DUF167 RPE_RS00230 8b04f023e3beca0fea83e0276156da89 108 Hamap MF_00634 UPF0235 protein YggU [yggU]. 8 100 17.793 T 23-04-2016 IPR003746 Protein of unknown function DUF167 RPE_RS20245 0436b70e4f925262d14a6b32660986cb 345 Pfam PF08843 Nucleotidyl transferase AbiEii toxin, Type IV TA system 45 335 5.4E-49 T 23-04-2016 IPR014942 Nucleotidyl transferase AbiEii toxin, Type IV TA system RPE_RS03160 54980a78133a5d2bd339cdec43367bd0 154 Gene3D G3DSA:3.40.50.2300 8 139 4.4E-28 T 23-04-2016 RPE_RS03160 54980a78133a5d2bd339cdec43367bd0 154 SUPERFAMILY SSF52172 8 142 2.42E-28 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS03160 54980a78133a5d2bd339cdec43367bd0 154 Pfam PF00072 Response regulator receiver domain 10 133 6.2E-17 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS03160 54980a78133a5d2bd339cdec43367bd0 154 SMART SM00448 8 133 6.6E-18 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS03160 54980a78133a5d2bd339cdec43367bd0 154 PANTHER PTHR26402 8 138 2.4E-22 T 23-04-2016 RPE_RS23825 6ad32fdb0637cc3c87fc7c0f5e207bc2 142 PANTHER PTHR11644 29 139 8.4E-13 T 23-04-2016 RPE_RS23825 6ad32fdb0637cc3c87fc7c0f5e207bc2 142 SUPERFAMILY SSF53927 6 139 4.73E-25 T 23-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 RPE_RS23825 6ad32fdb0637cc3c87fc7c0f5e207bc2 142 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 7 108 1.7E-6 T 23-04-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 RPE_RS23825 6ad32fdb0637cc3c87fc7c0f5e207bc2 142 Gene3D G3DSA:3.40.140.10 6 140 3.5E-34 T 23-04-2016 RPE_RS02660 588b9447b98ead5ef5d3362965d68833 270 Pfam PF01497 Periplasmic binding protein 19 236 1.3E-23 T 23-04-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 RPE_RS02660 588b9447b98ead5ef5d3362965d68833 270 SUPERFAMILY SSF53807 15 265 1.31E-33 T 23-04-2016 RPE_RS02660 588b9447b98ead5ef5d3362965d68833 270 Gene3D G3DSA:3.40.50.1980 123 215 1.8E-13 T 23-04-2016 RPE_RS02660 588b9447b98ead5ef5d3362965d68833 270 Gene3D G3DSA:3.40.50.1980 18 122 2.2E-13 T 23-04-2016 RPE_RS02660 588b9447b98ead5ef5d3362965d68833 270 PANTHER PTHR30535 13 265 7.8E-21 T 23-04-2016 RPE_RS04210 d69c56a4bce61e89f44609f40e4bf7f4 277 Pfam PF07357 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) 18 273 1.1E-112 T 23-04-2016 IPR009953 Dinitrogenase reductase ADP-ribosyltransferase RPE_RS18365 31f8043a730f8abe9845bc80a37a38e0 445 PANTHER PTHR37944 54 445 5.1E-84 T 23-04-2016 RPE_RS18365 31f8043a730f8abe9845bc80a37a38e0 445 PANTHER PTHR37944:SF2 54 445 5.1E-84 T 23-04-2016 RPE_RS18365 31f8043a730f8abe9845bc80a37a38e0 445 Pfam PF04966 Carbohydrate-selective porin, OprB family 87 445 3.5E-64 T 23-04-2016 IPR007049 Carbohydrate-selective porin OprB GO:0005215|GO:0006810|GO:0016021 RPE_RS20080 bdc9336bb111c6e93015ad489d9907ea 391 TIGRFAM TIGR02783 TrbL_P: P-type conjugative transfer protein TrbL 3 311 9.1E-71 T 23-04-2016 IPR014150 Conjugal transfer, TrbL RPE_RS20080 bdc9336bb111c6e93015ad489d9907ea 391 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 38 254 1.4E-54 T 23-04-2016 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 RPE_RS04315 cb37ca1c5cc5757f317a275ba73df775 489 Gene3D G3DSA:3.50.50.60 1 61 2.8E-29 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS04315 cb37ca1c5cc5757f317a275ba73df775 489 Gene3D G3DSA:3.50.50.60 156 280 2.8E-29 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS04315 cb37ca1c5cc5757f317a275ba73df775 489 Pfam PF01593 Flavin containing amine oxidoreductase 13 282 9.1E-13 T 23-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 RPE_RS04315 cb37ca1c5cc5757f317a275ba73df775 489 SUPERFAMILY SSF51905 450 484 2.43E-35 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS04315 cb37ca1c5cc5757f317a275ba73df775 489 SUPERFAMILY SSF51905 1 308 2.43E-35 T 23-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RPE_RS04315 cb37ca1c5cc5757f317a275ba73df775 489 PANTHER PTHR10668:SF4 3 484 5.2E-48 T 23-04-2016 RPE_RS04315 cb37ca1c5cc5757f317a275ba73df775 489 PANTHER PTHR10668 3 484 5.2E-48 T 23-04-2016 RPE_RS07160 f261de8599e15f56fbccf949fe49686c 97 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 4 80 2.4E-13 T 23-04-2016 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family RPE_RS07160 f261de8599e15f56fbccf949fe49686c 97 PANTHER PTHR33755 1 97 2.2E-12 T 23-04-2016 RPE_RS06110 52bba811eeb767e8a846406d81021e69 120 Pfam PF00581 Rhodanese-like domain 12 100 6.5E-8 T 23-04-2016 IPR001763 Rhodanese-like domain RPE_RS06110 52bba811eeb767e8a846406d81021e69 120 SUPERFAMILY SSF52821 2 109 1.09E-21 T 23-04-2016 IPR001763 Rhodanese-like domain RPE_RS06110 52bba811eeb767e8a846406d81021e69 120 SMART SM00450 8 104 1.9E-8 T 23-04-2016 IPR001763 Rhodanese-like domain RPE_RS06110 52bba811eeb767e8a846406d81021e69 120 Gene3D G3DSA:3.40.250.10 4 109 2.1E-22 T 23-04-2016 IPR001763 Rhodanese-like domain RPE_RS22430 4aa6fe0ce896ea262417839304296163 318 Pfam PF00561 alpha/beta hydrolase fold 66 304 4.2E-25 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS22430 4aa6fe0ce896ea262417839304296163 318 PRINTS PR00412 Epoxide hydrolase signature 71 89 1.6E-5 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RPE_RS22430 4aa6fe0ce896ea262417839304296163 318 PRINTS PR00412 Epoxide hydrolase signature 134 147 1.6E-5 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RPE_RS22430 4aa6fe0ce896ea262417839304296163 318 PRINTS PR00412 Epoxide hydrolase signature 293 315 1.6E-5 T 23-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 RPE_RS22430 4aa6fe0ce896ea262417839304296163 318 SUPERFAMILY SSF53474 42 318 1.43E-67 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS22430 4aa6fe0ce896ea262417839304296163 318 PRINTS PR00111 Alpha/beta hydrolase fold signature 90 105 3.2E-8 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS22430 4aa6fe0ce896ea262417839304296163 318 PRINTS PR00111 Alpha/beta hydrolase fold signature 148 161 3.2E-8 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS22430 4aa6fe0ce896ea262417839304296163 318 PRINTS PR00111 Alpha/beta hydrolase fold signature 134 147 3.2E-8 T 23-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RPE_RS22430 4aa6fe0ce896ea262417839304296163 318 PANTHER PTHR10992 210 318 1.4E-54 T 23-04-2016 RPE_RS22430 4aa6fe0ce896ea262417839304296163 318 PANTHER PTHR10992 38 182 1.4E-54 T 23-04-2016 RPE_RS22430 4aa6fe0ce896ea262417839304296163 318 PANTHER PTHR10992:SF877 210 318 1.4E-54 T 23-04-2016 RPE_RS22430 4aa6fe0ce896ea262417839304296163 318 PANTHER PTHR10992:SF877 38 182 1.4E-54 T 23-04-2016 RPE_RS22430 4aa6fe0ce896ea262417839304296163 318 Gene3D G3DSA:3.40.50.1820 43 316 1.0E-66 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS10795 6d67bfd0a1bc2d16622f9f506b1b821d 843 SUPERFAMILY SSF52151 468 820 2.09E-36 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RPE_RS10795 6d67bfd0a1bc2d16622f9f506b1b821d 843 SUPERFAMILY SSF52151 58 112 2.09E-36 T 23-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RPE_RS10795 6d67bfd0a1bc2d16622f9f506b1b821d 843 Gene3D G3DSA:3.40.1090.10 60 149 5.2E-47 T 23-04-2016 RPE_RS10795 6d67bfd0a1bc2d16622f9f506b1b821d 843 Gene3D G3DSA:3.40.1090.10 456 817 5.2E-47 T 23-04-2016 RPE_RS10795 6d67bfd0a1bc2d16622f9f506b1b821d 843 Pfam PF01734 Patatin-like phospholipase 63 112 1.6E-9 T 23-04-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 RPE_RS14215 fd16736d91da3778c609f981e36c051f 160 Pfam PF12821 Threonine/Serine exporter, ThrE 16 152 2.1E-18 T 23-04-2016 IPR024528 Threonine/Serine exporter, ThrE RPE_RS14215 fd16736d91da3778c609f981e36c051f 160 PANTHER PTHR34390 1 156 5.7E-15 T 23-04-2016 RPE_RS07890 b869dfb80e845a64850903b6b381e27c 98 PANTHER PTHR33755 1 91 8.8E-17 T 23-04-2016 RPE_RS07890 b869dfb80e845a64850903b6b381e27c 98 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 4 91 8.5E-17 T 23-04-2016 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family RPE_RS19960 bcbaab8d45bdc60aa7c10a32d7ec02fc 363 Pfam PF11769 Protein of unknown function (DUF3313) 100 292 3.2E-43 T 23-04-2016 IPR021747 Protein of unknown function DUF3313 RPE_RS22125 1824105c4629fb66d1475feee96ed5ef 308 PANTHER PTHR30168 2 308 1.1E-133 T 23-04-2016 RPE_RS22125 1824105c4629fb66d1475feee96ed5ef 308 Pfam PF04228 Putative neutral zinc metallopeptidase 1 303 5.9E-99 T 23-04-2016 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative RPE_RS06170 fa66640f19397e75b5bd6c1550f9a286 211 PANTHER PTHR31527:SF0 7 210 3.0E-55 T 23-04-2016 RPE_RS06170 fa66640f19397e75b5bd6c1550f9a286 211 TIGRFAM TIGR03424 urea_degr_1: urea carboxylase-associated protein 1 10 205 9.4E-100 T 23-04-2016 IPR017791 Urea carboxylase-associated protein 1 RPE_RS06170 fa66640f19397e75b5bd6c1550f9a286 211 Pfam PF09347 Domain of unknown function (DUF1989) 16 180 2.8E-64 T 23-04-2016 IPR018959 Domain of unknown function DUF1989 RPE_RS06170 fa66640f19397e75b5bd6c1550f9a286 211 PANTHER PTHR31527 7 210 3.0E-55 T 23-04-2016 RPE_RS21400 6e7a66df14a2e6d329232c86ef5da0c9 163 SUPERFAMILY SSF50341 15 155 7.46E-29 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS21400 6e7a66df14a2e6d329232c86ef5da0c9 163 Gene3D G3DSA:2.40.50.180 59 88 7.7E-4 T 23-04-2016 RPE_RS21400 6e7a66df14a2e6d329232c86ef5da0c9 163 Pfam PF01584 CheW-like domain 21 155 8.8E-27 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS21400 6e7a66df14a2e6d329232c86ef5da0c9 163 SMART SM00260 17 154 1.5E-22 T 23-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 RPE_RS21400 6e7a66df14a2e6d329232c86ef5da0c9 163 PANTHER PTHR22617 17 155 2.3E-22 T 23-04-2016 RPE_RS04985 1c6ba45e2f70ef16a200d72296111fbc 167 TIGRFAM TIGR02159 PA_CoA_Oxy4: phenylacetate-CoA oxygenase, PaaJ subunit 22 166 5.6E-60 T 23-04-2016 IPR011883 Phenylacetate-CoA oxygenase, PaaJ subunit UniPathway: UPA00930 RPE_RS04985 1c6ba45e2f70ef16a200d72296111fbc 167 Pfam PF01883 Domain of unknown function DUF59 13 74 4.0E-15 T 23-04-2016 IPR002744 Domain of unknown function DUF59 RPE_RS04985 1c6ba45e2f70ef16a200d72296111fbc 167 SUPERFAMILY SSF117916 11 105 8.17E-25 T 23-04-2016 RPE_RS07795 7edc569084bfa6f8a90afca35b0fcb1a 371 Pfam PF04347 Flagellar biosynthesis protein, FliO 24 93 1.4E-8 T 23-04-2016 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 RPE_RS21715 bdf2500bf8f39a9a6b5b70bf7059c365 283 Pfam PF01817 Chorismate mutase type II 15 92 1.7E-14 T 23-04-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 RPE_RS21715 bdf2500bf8f39a9a6b5b70bf7059c365 283 Gene3D G3DSA:1.20.59.10 3 93 1.0E-14 T 23-04-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 RPE_RS21715 bdf2500bf8f39a9a6b5b70bf7059c365 283 SMART SM00830 15 95 9.3E-18 T 23-04-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 RPE_RS21715 bdf2500bf8f39a9a6b5b70bf7059c365 283 SUPERFAMILY SSF48600 6 94 6.11E-17 T 23-04-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 RPE_RS07695 6af897af0aea5b07a95c9f54413dd4ce 114 Pfam PF10135 Rod binding protein 58 104 9.8E-10 T 23-04-2016 IPR019301 Flagellar protein FlgJ, N-terminal RPE_RS13400 b2818a8943296fe12a3561d454124ea9 620 SUPERFAMILY SSF53850 82 162 4.03E-22 T 23-04-2016 RPE_RS13400 b2818a8943296fe12a3561d454124ea9 620 SUPERFAMILY SSF53850 302 595 4.03E-22 T 23-04-2016 RPE_RS13400 b2818a8943296fe12a3561d454124ea9 620 SUPERFAMILY SSF53850 193 257 4.03E-22 T 23-04-2016 RPE_RS13400 b2818a8943296fe12a3561d454124ea9 620 SUPERFAMILY SSF53850 27 46 4.03E-22 T 23-04-2016 RPE_RS13400 b2818a8943296fe12a3561d454124ea9 620 Pfam PF12849 PBP superfamily domain 17 561 2.7E-21 T 23-04-2016 IPR024370 PBP domain RPE_RS13400 b2818a8943296fe12a3561d454124ea9 620 Gene3D G3DSA:3.40.190.10 234 436 8.2E-18 T 23-04-2016 RPE_RS13400 b2818a8943296fe12a3561d454124ea9 620 Gene3D G3DSA:3.40.190.10 527 541 8.2E-18 T 23-04-2016 RPE_RS06165 d7af0edff2c146a5d8db89f7eceae210 279 Pfam PF09347 Domain of unknown function (DUF1989) 53 216 9.7E-53 T 23-04-2016 IPR018959 Domain of unknown function DUF1989 RPE_RS06165 d7af0edff2c146a5d8db89f7eceae210 279 PANTHER PTHR31527:SF0 8 266 2.0E-39 T 23-04-2016 RPE_RS06165 d7af0edff2c146a5d8db89f7eceae210 279 PANTHER PTHR31527 8 266 2.0E-39 T 23-04-2016 RPE_RS06165 d7af0edff2c146a5d8db89f7eceae210 279 TIGRFAM TIGR03425 urea_degr_2: urea carboxylase-associated protein 2 49 271 2.6E-92 T 23-04-2016 IPR017792 Urea carboxylase-associated protein 2 RPE_RS00480 9f5328a614ce7e26705b2600d15c475e 380 PANTHER PTHR33376:SF5 12 355 1.4E-70 T 23-04-2016 RPE_RS00480 9f5328a614ce7e26705b2600d15c475e 380 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 47 332 9.6E-36 T 23-04-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 RPE_RS00480 9f5328a614ce7e26705b2600d15c475e 380 PANTHER PTHR33376 12 355 1.4E-70 T 23-04-2016 RPE_RS00480 9f5328a614ce7e26705b2600d15c475e 380 PIRSF PIRSF039026 13 370 5.3E-125 T 23-04-2016 IPR026289 Solute binding protein, mannitol/chloroaromatic system-like RPE_RS21610 a2d74abebe8872d93804cd4116a7a5c4 137 Pfam PF12616 Protein of unknown function (DUF3775) 55 125 2.9E-27 T 23-04-2016 IPR022254 Protein of unknown function DUF3775 RPE_RS15480 a3f942393f5494a048424d4c9c089d46 368 PANTHER PTHR30574:SF1 1 368 9.1E-37 T 23-04-2016 RPE_RS15480 a3f942393f5494a048424d4c9c089d46 368 PANTHER PTHR30574 1 368 9.1E-37 T 23-04-2016 RPE_RS15480 a3f942393f5494a048424d4c9c089d46 368 Pfam PF04143 Sulphur transport 26 339 6.4E-55 T 23-04-2016 IPR007272 Sulphur transport domain RPE_RS23260 a8d7590dfbbbffb2ef2854e745d11a84 67 Pfam PF11127 Protein of unknown function (DUF2892) 2 56 2.3E-9 T 23-04-2016 IPR021309 Protein of unknown function DUF2892 RPE_RS23295 095058a0f897e83c7c1a7928cde8fd6b 133 Pfam PF13115 YtkA-like 25 112 2.2E-21 T 23-04-2016 IPR032693 YtkA-like domain RPE_RS19105 b822cef9ca9591198e324fdcd22dbc2a 228 Pfam PF00881 Nitroreductase family 15 202 9.6E-34 T 23-04-2016 IPR029479 Nitroreductase RPE_RS19105 b822cef9ca9591198e324fdcd22dbc2a 228 Gene3D G3DSA:3.40.109.10 10 89 3.5E-43 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 RPE_RS19105 b822cef9ca9591198e324fdcd22dbc2a 228 Gene3D G3DSA:3.40.109.10 128 225 3.5E-43 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 RPE_RS19105 b822cef9ca9591198e324fdcd22dbc2a 228 PANTHER PTHR23026 10 213 2.3E-53 T 23-04-2016 RPE_RS19105 b822cef9ca9591198e324fdcd22dbc2a 228 SUPERFAMILY SSF55469 11 225 1.15E-45 T 23-04-2016 IPR000415 Nitroreductase-like GO:0016491 RPE_RS19105 b822cef9ca9591198e324fdcd22dbc2a 228 PANTHER PTHR23026:SF90 10 213 2.3E-53 T 23-04-2016 RPE_RS10870 1db89dd20d36266924251d72b2bc8637 168 Pfam PF04542 Sigma-70 region 2 6 63 1.5E-6 T 23-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RPE_RS10475 cd3f92cb6fd41c4c869882f97d17def3 130 SUPERFAMILY SSF53146 1 107 1.83E-17 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis RPE_RS10475 cd3f92cb6fd41c4c869882f97d17def3 130 Gene3D G3DSA:3.30.420.130 1 107 1.7E-10 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis RPE_RS13760 d38180748218e0bf09a526d0b8f4f9cf 244 PANTHER PTHR21392 16 218 3.1E-45 T 23-04-2016 RPE_RS13760 d38180748218e0bf09a526d0b8f4f9cf 244 SMART SM01144 15 224 4.9E-57 T 23-04-2016 IPR005636 DTW RPE_RS13760 d38180748218e0bf09a526d0b8f4f9cf 244 Pfam PF03942 DTW domain 18 218 5.7E-42 T 23-04-2016 IPR005636 DTW RPE_RS01180 41b72d1bf280d67c6ca64ff2d194e9c6 138 Pfam PF06823 Protein of unknown function (DUF1236) 74 138 5.9E-23 T 23-04-2016 IPR009642 Protein of unknown function DUF1236 RPE_RS18300 1e6abbf927acee4ef1c1c88db09fd585 348 TIGRFAM TIGR00832 acr3: arsenical-resistance protein 1 329 1.7E-113 T 23-04-2016 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 RPE_RS18300 1e6abbf927acee4ef1c1c88db09fd585 348 PANTHER PTHR10361:SF31 1 337 7.5E-115 T 23-04-2016 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 RPE_RS18300 1e6abbf927acee4ef1c1c88db09fd585 348 PIRSF PIRSF005508 1 343 4.2E-119 T 23-04-2016 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 RPE_RS18300 1e6abbf927acee4ef1c1c88db09fd585 348 Pfam PF01758 Sodium Bile acid symporter family 48 242 3.8E-36 T 23-04-2016 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 RPE_RS18300 1e6abbf927acee4ef1c1c88db09fd585 348 PANTHER PTHR10361 1 337 7.5E-115 T 23-04-2016 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 RPE_RS20995 e619e22f509fa59e50e7f5670b7d4f50 288 Gene3D G3DSA:3.40.50.720 11 282 1.4E-23 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS20995 e619e22f509fa59e50e7f5670b7d4f50 288 SUPERFAMILY SSF51735 11 279 5.14E-35 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS20995 e619e22f509fa59e50e7f5670b7d4f50 288 PANTHER PTHR10366 9 282 1.2E-21 T 23-04-2016 RPE_RS11400 e75f55f54bd1591c442a03a850c6c956 622 Gene3D G3DSA:3.40.390.10 545 618 6.5E-5 T 23-04-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 RPE_RS08380 eab7cec1ca00b36776c9c73d21039541 111 Pfam PF13827 Domain of unknown function (DUF4189) 16 107 4.8E-14 T 23-04-2016 IPR025240 Domain of unknown function DUF4189 RPE_RS04940 c76b5b8ed18a20e34f2f5fbbc6ede12a 184 PANTHER PTHR32154 1 175 3.6E-27 T 23-04-2016 RPE_RS04940 c76b5b8ed18a20e34f2f5fbbc6ede12a 184 SUPERFAMILY SSF53323 4 176 3.79E-29 T 23-04-2016 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 RPE_RS04940 c76b5b8ed18a20e34f2f5fbbc6ede12a 184 PANTHER PTHR32154:SF17 1 175 3.6E-27 T 23-04-2016 RPE_RS04940 c76b5b8ed18a20e34f2f5fbbc6ede12a 184 Gene3D G3DSA:3.40.920.10 4 175 2.2E-32 T 23-04-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 RPE_RS04940 c76b5b8ed18a20e34f2f5fbbc6ede12a 184 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 13 172 1.7E-26 T 23-04-2016 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 RPE_RS18495 fa156897db5bdf1e70effe13862a3f36 112 Pfam PF09361 Phasin protein 29 101 3.3E-10 T 23-04-2016 IPR018968 Phasin RPE_RS20250 b7498fa5d531d051a544ded2435999cd 194 Pfam PF13338 Transcriptional regulator, AbiEi antitoxin 28 101 7.5E-9 T 23-04-2016 IPR025159 Transcriptional regulator, AbiEi antitoxin RPE_RS22110 e0df9823a0611cfa59e221e11bd7f90e 186 SUPERFAMILY SSF53448 1 101 2.11E-6 T 23-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RPE_RS07640 eee53fb217debd99bd271a6052fdf916 224 SUPERFAMILY SSF53335 46 203 1.29E-23 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS07640 eee53fb217debd99bd271a6052fdf916 224 Gene3D G3DSA:3.40.50.150 45 200 1.1E-22 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS07640 eee53fb217debd99bd271a6052fdf916 224 Pfam PF13649 Methyltransferase domain 61 152 6.3E-12 T 23-04-2016 RPE_RS12070 479585314c2af6be334cd9bc8edb6f3d 213 Pfam PF00583 Acetyltransferase (GNAT) family 95 148 6.8E-8 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RPE_RS12070 479585314c2af6be334cd9bc8edb6f3d 213 Gene3D G3DSA:3.40.630.30 14 148 7.6E-13 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS12070 479585314c2af6be334cd9bc8edb6f3d 213 SUPERFAMILY SSF55729 15 152 5.32E-15 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS10710 a607325b579ebe14e59bd5416e5d6043 94 SUPERFAMILY SSF143100 4 45 4.58E-10 T 23-04-2016 RPE_RS10710 a607325b579ebe14e59bd5416e5d6043 94 Pfam PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system 5 77 8.4E-10 T 23-04-2016 IPR031807 HicB-like antitoxin of toxin-antitoxin system RPE_RS02325 e99295d177ee211040b6332b9a088fa3 107 SUPERFAMILY SSF141371 3 93 1.14E-7 T 23-04-2016 RPE_RS21590 3fa811e3a2a051f303b020713723ae0a 294 Pfam PF04536 Acid phosphatase of thylakoid lumen protein 34 156 3.8E-37 T 23-04-2016 IPR007621 TPM domain RPE_RS21590 3fa811e3a2a051f303b020713723ae0a 294 PANTHER PTHR30373 3 294 2.8E-76 T 23-04-2016 RPE_RS21590 3fa811e3a2a051f303b020713723ae0a 294 PANTHER PTHR30373:SF2 3 294 2.8E-76 T 23-04-2016 RPE_RS22645 d7ee9ac9885b2200a3455da2daa27e9b 300 Pfam PF13289 SIR2-like domain 106 276 4.0E-24 T 23-04-2016 RPE_RS10595 f0b7e83ea15e7e7b9fb301e91edfe793 274 Pfam PF14023 Protein of unknown function (DUF4239) 52 253 7.6E-14 T 23-04-2016 IPR025333 Protein of unknown function DUF4239 RPE_RS19035 384e13d96dcd209a23b983d3a39af3bd 169 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 25 155 1.8E-23 T 23-04-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component RPE_RS15610 bc2addf85045ab7729602d50ec0718a1 152 TIGRFAM TIGR03293 PhnG_redo: phosphonate C-P lyase system protein PhnG 10 151 9.3E-46 T 23-04-2016 IPR009609 Phosphonate metabolism PhnG GO:0015716|GO:0019634 KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399 RPE_RS15610 bc2addf85045ab7729602d50ec0718a1 152 Pfam PF06754 Phosphonate metabolism protein PhnG 11 150 4.6E-50 T 23-04-2016 IPR009609 Phosphonate metabolism PhnG GO:0015716|GO:0019634 KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399 RPE_RS22850 a115ad05b31e093bfe908d391dc285ce 170 Pfam PF10029 Predicted periplasmic protein (DUF2271) 23 162 1.2E-49 T 23-04-2016 IPR014469 Protein of unknown function DUF2271 RPE_RS22850 a115ad05b31e093bfe908d391dc285ce 170 PIRSF PIRSF014995 1 170 6.0E-61 T 23-04-2016 IPR014469 Protein of unknown function DUF2271 RPE_RS10335 390df376b69e43dfe88670f9b87212ca 161 Pfam PF11684 Protein of unknown function (DUF2380) 23 149 3.0E-23 T 23-04-2016 IPR021698 Protein of unknown function DUF2380 RPE_RS19065 e2a531fba2256258c0bdd662f09751c1 106 Pfam PF03692 Putative zinc- or iron-chelating domain 12 84 2.0E-7 T 23-04-2016 IPR005358 Putative zinc- or iron-chelating domain containing protein RPE_RS03680 f4f8f43b5919e403db24dbd949038d86 88 Pfam PF14373 Superinfection immunity protein 29 70 1.5E-10 T 23-04-2016 IPR016410 Bacteriophage-associated immunity protein RPE_RS03680 f4f8f43b5919e403db24dbd949038d86 88 ProDom PD028561 MEMBRANE IMMUNITY SUPERINFECTION GP66 PROTEIN IMM GP75 IMM RB69 INTEGRAL 24 69 3.0E-20 T 23-04-2016 IPR016410 Bacteriophage-associated immunity protein RPE_RS06500 746ab9484d2bd897e6dfb5901ee03b46 236 Pfam PF07298 NnrU protein 13 234 2.1E-63 T 23-04-2016 IPR009915 NnrU domain RPE_RS14630 4228b158a6b40bca97ca011da3024a2a 101 Pfam PF04800 ETC complex I subunit conserved region 2 96 6.7E-38 T 23-04-2016 IPR006885 NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrial GO:0016651|GO:0022900 RPE_RS14630 4228b158a6b40bca97ca011da3024a2a 101 Gene3D G3DSA:3.30.160.190 1 79 3.1E-36 T 23-04-2016 RPE_RS14630 4228b158a6b40bca97ca011da3024a2a 101 PANTHER PTHR12219 1 91 2.5E-47 T 23-04-2016 IPR006885 NADH dehydrogenase ubiquinone Fe-S protein 4, mitochondrial GO:0016651|GO:0022900 RPE_RS14630 4228b158a6b40bca97ca011da3024a2a 101 PANTHER PTHR12219:SF18 1 91 2.5E-47 T 23-04-2016 RPE_RS01540 cbd2d5f8736321bbcc42a1baf3ccb41b 179 PANTHER PTHR23091 1 173 3.0E-46 T 23-04-2016 RPE_RS01540 cbd2d5f8736321bbcc42a1baf3ccb41b 179 PANTHER PTHR23091:SF187 1 173 3.0E-46 T 23-04-2016 RPE_RS01540 cbd2d5f8736321bbcc42a1baf3ccb41b 179 SUPERFAMILY SSF55729 4 166 2.4E-33 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS01540 cbd2d5f8736321bbcc42a1baf3ccb41b 179 Gene3D G3DSA:3.40.630.30 3 169 1.2E-40 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS01540 cbd2d5f8736321bbcc42a1baf3ccb41b 179 Pfam PF13420 Acetyltransferase (GNAT) domain 6 161 1.4E-23 T 23-04-2016 RPE_RS15890 e732bf1f286f625be850635dc641b8a1 204 Pfam PF02677 Uncharacterized BCR, COG1636 18 192 3.7E-59 T 23-04-2016 IPR003828 Protein of unknown function DUF208 RPE_RS15890 e732bf1f286f625be850635dc641b8a1 204 PANTHER PTHR36701 2 203 1.2E-76 T 23-04-2016 RPE_RS00850 a5a07fc32cac3e88cf441bbbdf1e3d2b 201 Pfam PF05233 PHB accumulation regulatory domain 74 113 1.6E-19 T 23-04-2016 IPR007897 PHB accumulation regulatory RPE_RS00850 a5a07fc32cac3e88cf441bbbdf1e3d2b 201 TIGRFAM TIGR01848 PHA_reg_PhaR: polyhydroxyalkanoate synthesis repressor PhaR 10 115 1.8E-45 T 23-04-2016 IPR010134 Polyhydroxyalkanoate synthesis repressor PhaR RPE_RS00850 a5a07fc32cac3e88cf441bbbdf1e3d2b 201 Pfam PF07879 PHB/PHA accumulation regulator DNA-binding domain 9 68 1.3E-29 T 23-04-2016 IPR012909 PHA accumulation regulator DNA-binding, N-terminal RPE_RS16365 5daeb63bb39398adace47c607c174013 140 SUPERFAMILY SSF161084 4 131 1.28E-19 T 23-04-2016 RPE_RS16365 5daeb63bb39398adace47c607c174013 140 Gene3D G3DSA:1.20.120.550 4 135 1.1E-11 T 23-04-2016 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain RPE_RS16365 5daeb63bb39398adace47c607c174013 140 Pfam PF01124 MAPEG family 7 132 4.9E-15 T 23-04-2016 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein RPE_RS18175 4ecbf1e0dc43630791feb71d0c29ba20 127 SMART SM00448 3 115 1.5E-16 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS18175 4ecbf1e0dc43630791feb71d0c29ba20 127 SUPERFAMILY SSF52172 3 118 2.85E-27 T 23-04-2016 IPR011006 CheY-like superfamily RPE_RS18175 4ecbf1e0dc43630791feb71d0c29ba20 127 Gene3D G3DSA:3.40.50.2300 3 118 6.2E-26 T 23-04-2016 RPE_RS18175 4ecbf1e0dc43630791feb71d0c29ba20 127 Pfam PF00072 Response regulator receiver domain 5 111 2.7E-21 T 23-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RPE_RS18175 4ecbf1e0dc43630791feb71d0c29ba20 127 PANTHER PTHR26402 3 111 3.2E-22 T 23-04-2016 RPE_RS19850 ec4a928cf57b2af2d4e21996e483a086 199 PANTHER PTHR30178 1 187 2.6E-38 T 23-04-2016 RPE_RS19850 ec4a928cf57b2af2d4e21996e483a086 199 Pfam PF01184 GPR1/FUN34/yaaH family 3 167 9.2E-32 T 23-04-2016 IPR000791 Acetate transporter GPR1/FUN34/SatP family GO:0016021 RPE_RS07705 7ea869919ddb88997b5c4f7682fcf327 136 Pfam PF10768 Class II flagellar assembly regulator 1 133 2.0E-43 T 23-04-2016 IPR019704 Flagellar assembly regulator FliX, class II RPE_RS21640 0ec5c60209d1de739361da4c0f133180 474 Pfam PF04932 O-Antigen ligase 209 375 7.3E-11 T 23-04-2016 IPR007016 O-antigen ligase-related RPE_RS21970 90d035e27e859d8a5ce48c5802ee7a2a 174 ProSitePatterns PS00018 EF-hand calcium-binding domain. 63 75 - T 23-04-2016 IPR018247 EF-Hand 1, calcium-binding site RPE_RS21970 90d035e27e859d8a5ce48c5802ee7a2a 174 Pfam PF04773 FecR protein 37 127 1.5E-8 T 23-04-2016 IPR006860 FecR protein RPE_RS19100 b190267dca9cbcaa53d4831bef87c4cc 261 PANTHER PTHR11941 21 261 7.9E-57 T 23-04-2016 RPE_RS19100 b190267dca9cbcaa53d4831bef87c4cc 261 Gene3D G3DSA:3.90.226.10 16 261 1.1E-57 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS19100 b190267dca9cbcaa53d4831bef87c4cc 261 SUPERFAMILY SSF52096 14 261 4.79E-59 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS19100 b190267dca9cbcaa53d4831bef87c4cc 261 Pfam PF00378 Enoyl-CoA hydratase/isomerase 21 261 8.1E-38 T 23-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 RPE_RS19730 5a988cbaade8f10d55e861b7bbce431e 123 SUPERFAMILY SSF53137 2 97 1.31E-20 T 23-04-2016 RPE_RS04745 c86fd424e77e102602a28de1192e44e8 211 Pfam PF00293 NUDIX domain 51 160 4.2E-14 T 23-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RPE_RS04745 c86fd424e77e102602a28de1192e44e8 211 Gene3D G3DSA:3.90.79.10 45 209 1.1E-42 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS04745 c86fd424e77e102602a28de1192e44e8 211 SUPERFAMILY SSF55811 38 201 1.25E-39 T 23-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RPE_RS04745 c86fd424e77e102602a28de1192e44e8 211 PANTHER PTHR12992 50 209 5.3E-49 T 23-04-2016 RPE_RS03915 1c89d1467e76a6aeef8af159207cade8 221 Pfam PF13861 FlgD Tudor-like domain 86 216 1.1E-7 T 23-04-2016 IPR025963 FlgD Tudor-like domain RPE_RS03915 1c89d1467e76a6aeef8af159207cade8 221 PANTHER PTHR30435:SF15 13 206 8.7E-29 T 23-04-2016 RPE_RS03915 1c89d1467e76a6aeef8af159207cade8 221 Pfam PF13860 FlgD Ig-like domain 107 177 2.3E-16 T 23-04-2016 IPR025965 FlgD Ig-like domain RPE_RS03915 1c89d1467e76a6aeef8af159207cade8 221 PANTHER PTHR30435 13 206 8.7E-29 T 23-04-2016 RPE_RS03915 1c89d1467e76a6aeef8af159207cade8 221 Pfam PF03963 Flagellar hook capping protein - N-terminal region 4 76 7.2E-17 T 23-04-2016 IPR005648 Flagellar hook capping protein RPE_RS21585 6c9902b30c1254e75e99f5f1f3d79b23 165 Pfam PF04536 Acid phosphatase of thylakoid lumen protein 20 141 7.4E-17 T 23-04-2016 IPR007621 TPM domain RPE_RS21585 6c9902b30c1254e75e99f5f1f3d79b23 165 PANTHER PTHR30373 13 165 7.0E-69 T 23-04-2016 RPE_RS21585 6c9902b30c1254e75e99f5f1f3d79b23 165 PANTHER PTHR30373:SF3 13 165 7.0E-69 T 23-04-2016 RPE_RS22010 ee355ac881af51df7ca10f1f25861044 474 Pfam PF07486 Cell Wall Hydrolase 321 431 1.7E-22 T 23-04-2016 IPR011105 Cell wall hydrolase, SleB GO:0016787 RPE_RS22010 ee355ac881af51df7ca10f1f25861044 474 PANTHER PTHR21666:SF178 72 436 6.4E-99 T 23-04-2016 RPE_RS22010 ee355ac881af51df7ca10f1f25861044 474 PANTHER PTHR21666 72 436 6.4E-99 T 23-04-2016 RPE_RS12315 1acb74bfc70f801b369391aa38813a50 577 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 138 158 - T 23-04-2016 IPR007087 Zinc finger, C2H2 GO:0046872 RPE_RS13165 46f773adb8d904aa766b9c7a06cf3ef3 351 SUPERFAMILY SSF63712 32 220 6.28E-23 T 23-04-2016 IPR006202 Neurotransmitter-gated ion-channel ligand-binding domain GO:0005230|GO:0006810|GO:0016020 RPE_RS13165 46f773adb8d904aa766b9c7a06cf3ef3 351 PANTHER PTHR18945 34 303 4.0E-15 T 23-04-2016 IPR006201 Neurotransmitter-gated ion-channel GO:0006811|GO:0016021 RPE_RS13165 46f773adb8d904aa766b9c7a06cf3ef3 351 Gene3D G3DSA:2.70.170.10 32 225 5.2E-26 T 23-04-2016 IPR006202 Neurotransmitter-gated ion-channel ligand-binding domain GO:0005230|GO:0006810|GO:0016020 RPE_RS13165 46f773adb8d904aa766b9c7a06cf3ef3 351 Pfam PF02931 Neurotransmitter-gated ion-channel ligand binding domain 33 185 2.5E-17 T 23-04-2016 IPR006202 Neurotransmitter-gated ion-channel ligand-binding domain GO:0005230|GO:0006810|GO:0016020 RPE_RS11225 19cf5ae1c503296c1db7529e17d2a7ff 207 Gene3D G3DSA:3.40.50.300 10 207 1.5E-72 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS11225 19cf5ae1c503296c1db7529e17d2a7ff 207 PIRSF PIRSF015617 8 207 2.9E-68 T 23-04-2016 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 RPE_RS11225 19cf5ae1c503296c1db7529e17d2a7ff 207 SUPERFAMILY SSF52540 18 207 3.9E-66 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS11225 19cf5ae1c503296c1db7529e17d2a7ff 207 PANTHER PTHR30069 16 207 6.6E-59 T 23-04-2016 RPE_RS11225 19cf5ae1c503296c1db7529e17d2a7ff 207 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 34 207 1.6E-65 T 23-04-2016 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 RPE_RS11225 19cf5ae1c503296c1db7529e17d2a7ff 207 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 35 207 2.2E-61 T 23-04-2016 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 RPE_RS22260 f7160c13b9b62a655acc563f513708bb 610 Gene3D G3DSA:1.10.760.10 508 544 1.1E-10 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS22260 f7160c13b9b62a655acc563f513708bb 610 Gene3D G3DSA:1.10.760.10 460 461 1.1E-10 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS22260 f7160c13b9b62a655acc563f513708bb 610 Gene3D G3DSA:1.10.760.10 328 375 1.1E-10 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS22260 f7160c13b9b62a655acc563f513708bb 610 Gene3D G3DSA:1.10.760.10 590 610 1.1E-10 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS22260 f7160c13b9b62a655acc563f513708bb 610 SUPERFAMILY SSF46626 320 352 5.57E-15 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS22260 f7160c13b9b62a655acc563f513708bb 610 SUPERFAMILY SSF46626 501 545 5.57E-15 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS22260 f7160c13b9b62a655acc563f513708bb 610 SUPERFAMILY SSF46626 591 610 5.57E-15 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS19465 9c1c2ba990ec4aee87aee662269b8f7c 270 Pfam PF00696 Amino acid kinase family 38 218 1.9E-20 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RPE_RS19465 9c1c2ba990ec4aee87aee662269b8f7c 270 PIRSF PIRSF039097 1 270 1.9E-119 T 23-04-2016 IPR030669 Molybdenum storage protein subunit alpha/beta GO:0005737|GO:0030151 RPE_RS19465 9c1c2ba990ec4aee87aee662269b8f7c 270 Gene3D G3DSA:3.40.1160.10 37 268 8.6E-28 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RPE_RS19465 9c1c2ba990ec4aee87aee662269b8f7c 270 SUPERFAMILY SSF53633 39 268 9.29E-31 T 23-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RPE_RS15410 736d8d7cc51353211111936d9fd1be3b 123 Gene3D G3DSA:1.10.760.10 19 102 3.5E-15 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS15410 736d8d7cc51353211111936d9fd1be3b 123 SUPERFAMILY SSF46626 20 102 4.51E-16 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS21100 219cc98b6903518c9cbc372fb06e770f 433 PANTHER PTHR30482 22 355 4.3E-52 T 23-04-2016 RPE_RS21100 219cc98b6903518c9cbc372fb06e770f 433 Pfam PF02653 Branched-chain amino acid transport system / permease component 48 314 1.1E-27 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RPE_RS16655 0a9646445a1e0354da82d921239908ee 405 PANTHER PTHR30489 32 405 3.0E-42 T 23-04-2016 RPE_RS16655 0a9646445a1e0354da82d921239908ee 405 Pfam PF02687 FtsX-like permease family 289 400 2.7E-12 T 23-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 RPE_RS16655 0a9646445a1e0354da82d921239908ee 405 PANTHER PTHR30489:SF3 32 405 3.0E-42 T 23-04-2016 RPE_RS16655 0a9646445a1e0354da82d921239908ee 405 PIRSF PIRSF031773 20 404 3.2E-61 T 23-04-2016 IPR005891 DevC protein RPE_RS16655 0a9646445a1e0354da82d921239908ee 405 Pfam PF12704 MacB-like periplasmic core domain 47 253 4.5E-11 T 23-04-2016 IPR025857 MacB-like periplasmic core domain RPE_RS22600 fadd0a36efa1ce0b72a09b9862452585 103 SUPERFAMILY SSF46548 12 93 5.23E-14 T 23-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 RPE_RS22600 fadd0a36efa1ce0b72a09b9862452585 103 TIGRFAM TIGR02936 fdxN_nitrog: ferredoxin III, nif-specific 4 96 7.2E-41 T 23-04-2016 IPR014283 Ferredoxin III 4[4Fe-4S], nif-specific RPE_RS22600 fadd0a36efa1ce0b72a09b9862452585 103 Pfam PF12838 4Fe-4S dicluster domain 24 91 5.0E-8 T 23-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RPE_RS22600 fadd0a36efa1ce0b72a09b9862452585 103 Gene3D G3DSA:1.10.1060.10 18 94 2.5E-13 T 23-04-2016 RPE_RS22600 fadd0a36efa1ce0b72a09b9862452585 103 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 78 89 - T 23-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RPE_RS20880 c7236cedf5a13245714035779ff7f5b5 388 Pfam PF07995 Glucose / Sorbosone dehydrogenase 52 382 2.2E-137 T 23-04-2016 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 RPE_RS20880 c7236cedf5a13245714035779ff7f5b5 388 Gene3D G3DSA:2.120.10.30 37 387 7.2E-113 T 23-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like RPE_RS20880 c7236cedf5a13245714035779ff7f5b5 388 PANTHER PTHR19328 43 388 7.1E-77 T 23-04-2016 RPE_RS20880 c7236cedf5a13245714035779ff7f5b5 388 SUPERFAMILY SSF50952 42 387 4.05E-50 T 23-04-2016 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 RPE_RS03795 8c384bb5b5b08198d40994cda9573dc3 257 Gene3D G3DSA:3.10.129.10 34 104 5.0E-7 T 23-04-2016 IPR029069 HotDog domain RPE_RS03795 8c384bb5b5b08198d40994cda9573dc3 257 Pfam PF13622 Thioesterase-like superfamily 20 253 6.6E-28 T 23-04-2016 RPE_RS03795 8c384bb5b5b08198d40994cda9573dc3 257 SUPERFAMILY SSF54637 44 108 6.49E-7 T 23-04-2016 IPR029069 HotDog domain RPE_RS06580 6a06c263deaa52ed00e638c511de3bc1 437 Pfam PF11902 Protein of unknown function (DUF3422) 16 432 4.2E-157 T 23-04-2016 IPR021830 Protein of unknown function DUF3422 RPE_RS15850 6c90d84203dd483f17f690b70c0937cd 785 Pfam PF11339 Protein of unknown function (DUF3141) 81 628 3.6E-242 T 23-04-2016 IPR024501 Protein of unknown function DUF3141 RPE_RS15850 6c90d84203dd483f17f690b70c0937cd 785 SUPERFAMILY SSF53474 160 434 1.28E-22 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS15850 6c90d84203dd483f17f690b70c0937cd 785 Gene3D G3DSA:3.40.50.1820 173 255 6.5E-9 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS15850 6c90d84203dd483f17f690b70c0937cd 785 Gene3D G3DSA:3.40.50.1820 299 427 6.5E-9 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS00075 dc5e8149a51278c0983a89437a72635d 54 Pfam PF05545 Cbb3-type cytochrome oxidase component FixQ 10 54 3.3E-16 T 23-04-2016 IPR008621 Cbb3-type cytochrome oxidase component RPE_RS24455 19ca2243bb5b09909063e288a5526625 344 PANTHER PTHR34697:SF2 8 334 3.4E-71 T 23-04-2016 RPE_RS24455 19ca2243bb5b09909063e288a5526625 344 PANTHER PTHR34697 8 334 3.4E-71 T 23-04-2016 RPE_RS24455 19ca2243bb5b09909063e288a5526625 344 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 25 306 1.1E-10 T 23-04-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD RPE_RS21275 3ecd5e8c80a7e63f452e66534f220a44 395 Pfam PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX 107 248 6.6E-9 T 23-04-2016 IPR031811 AlgX, SGNH hydrolase-like domain KEGG: 00061+2.3.1.-|KEGG: 00253+2.3.1.-|KEGG: 00261+2.3.1.-|KEGG: 00310+2.3.1.-|KEGG: 00330+2.3.1.-|KEGG: 00332+2.3.1.-|KEGG: 00340+2.3.1.-|KEGG: 00350+2.3.1.-|KEGG: 00564+2.3.1.-|KEGG: 00565+2.3.1.-|KEGG: 00604+2.3.1.-|KEGG: 00623+2.3.1.-|KEGG: 00626+2.3.1.-|KEGG: 00627+2.3.1.-|KEGG: 00642+2.3.1.-|KEGG: 00650+2.3.1.-|KEGG: 00680+2.3.1.-|KEGG: 00903+2.3.1.-|KEGG: 00904+2.3.1.-|KEGG: 00906+2.3.1.-|KEGG: 00940+2.3.1.-|KEGG: 00942+2.3.1.-|KEGG: 00950+2.3.1.-|KEGG: 00960+2.3.1.-|KEGG: 00965+2.3.1.-|UniPathway: UPA00286 RPE_RS17475 959bd7c72ffb3ec1ae5d61bd9de9c4e9 207 Pfam PF10649 Protein of unknown function (DUF2478) 35 194 3.2E-44 T 23-04-2016 IPR018912 Protein of unknown function DUF2478 RPE_RS05215 a37662b914eac050ca9c762a9bbc7850 788 Pfam PF12770 CHAT domain 542 656 3.3E-6 T 23-04-2016 IPR024983 CHAT domain RPE_RS04840 77347b9b23f1ff8a00f51302f69120bd 147 PANTHER PTHR30558 1 147 7.8E-77 T 23-04-2016 RPE_RS04840 77347b9b23f1ff8a00f51302f69120bd 147 TIGRFAM TIGR02803 ExbD_1: TonB system transport protein ExbD 20 141 1.9E-63 T 23-04-2016 IPR014170 TonB system transport protein ExbD type-1 GO:0006810|GO:0016020 RPE_RS04840 77347b9b23f1ff8a00f51302f69120bd 147 Pfam PF02472 Biopolymer transport protein ExbD/TolR 20 138 8.8E-26 T 23-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 RPE_RS04840 77347b9b23f1ff8a00f51302f69120bd 147 PANTHER PTHR30558:SF9 1 147 7.8E-77 T 23-04-2016 RPE_RS03675 291d7996e917f4256f74a24ca2a153fa 256 SUPERFAMILY SSF56281 3 243 7.07E-17 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS03675 291d7996e917f4256f74a24ca2a153fa 256 Pfam PF12706 Beta-lactamase superfamily domain 21 216 1.3E-11 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS03675 291d7996e917f4256f74a24ca2a153fa 256 Gene3D G3DSA:3.60.15.10 3 253 1.0E-39 T 23-04-2016 IPR001279 Metallo-beta-lactamase RPE_RS03675 291d7996e917f4256f74a24ca2a153fa 256 PANTHER PTHR15032 2 254 1.6E-30 T 23-04-2016 RPE_RS15465 972f9dd111284b3f50eb3ff06f4e0771 247 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 11 225 2.4E-58 T 23-04-2016 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 RPE_RS15465 972f9dd111284b3f50eb3ff06f4e0771 247 PANTHER PTHR31272:SF4 3 238 4.0E-73 T 23-04-2016 RPE_RS15465 972f9dd111284b3f50eb3ff06f4e0771 247 PANTHER PTHR31272 3 238 4.0E-73 T 23-04-2016 RPE_RS01470 8eba35a1194b6e26a77d2becc15993ac 136 SUPERFAMILY SSF161084 5 132 1.44E-25 T 23-04-2016 RPE_RS01470 8eba35a1194b6e26a77d2becc15993ac 136 Pfam PF01124 MAPEG family 12 132 9.5E-20 T 23-04-2016 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein RPE_RS01470 8eba35a1194b6e26a77d2becc15993ac 136 Gene3D G3DSA:1.20.120.550 13 131 6.8E-18 T 23-04-2016 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain RPE_RS14145 30230afc17f14f1a1a8e05aa2e99aad5 707 TIGRFAM TIGR01104 V_PPase: V-type H(+)-translocating pyrophosphatase 6 707 1.9E-268 T 23-04-2016 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 RPE_RS14145 30230afc17f14f1a1a8e05aa2e99aad5 707 Hamap MF_01129 Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 1 706 25.059 T 23-04-2016 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 RPE_RS14145 30230afc17f14f1a1a8e05aa2e99aad5 707 PIRSF PIRSF001265 1 707 8.2E-243 T 23-04-2016 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 RPE_RS14145 30230afc17f14f1a1a8e05aa2e99aad5 707 PANTHER PTHR31998 4 707 0.0 T 23-04-2016 RPE_RS14145 30230afc17f14f1a1a8e05aa2e99aad5 707 Pfam PF03030 Inorganic H+ pyrophosphatase 13 700 9.5E-257 T 23-04-2016 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0015992|GO:0016020 KEGG: 00190+3.6.1.1 RPE_RS14145 30230afc17f14f1a1a8e05aa2e99aad5 707 PANTHER PTHR31998:SF0 4 707 0.0 T 23-04-2016 RPE_RS18215 517faefd0698e44d4d91856ec3235375 217 Gene3D G3DSA:3.40.1550.10 10 200 4.4E-45 T 23-04-2016 IPR028976 CheC-like domain RPE_RS18215 517faefd0698e44d4d91856ec3235375 217 SUPERFAMILY SSF103039 9 200 1.57E-41 T 23-04-2016 IPR028976 CheC-like domain RPE_RS00490 b018ec578ec0f364c01d53648bd7c25b 638 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 411 627 1.1E-39 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RPE_RS00490 b018ec578ec0f364c01d53648bd7c25b 638 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 11 207 1.2E-32 T 23-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RPE_RS00490 b018ec578ec0f364c01d53648bd7c25b 638 PANTHER PTHR33362:SF7 6 218 3.0E-72 T 23-04-2016 RPE_RS00490 b018ec578ec0f364c01d53648bd7c25b 638 PANTHER PTHR33362:SF7 413 633 3.0E-72 T 23-04-2016 RPE_RS00490 b018ec578ec0f364c01d53648bd7c25b 638 PANTHER PTHR33362 6 218 3.0E-72 T 23-04-2016 RPE_RS00490 b018ec578ec0f364c01d53648bd7c25b 638 PANTHER PTHR33362 413 633 3.0E-72 T 23-04-2016 RPE_RS17085 b453e06cc73d47dae97223e7ac61667a 250 SUPERFAMILY SSF53300 55 208 9.64E-6 T 23-04-2016 IPR002035 von Willebrand factor, type A RPE_RS23730 61fb43b9e736d044207bdb8be1068748 185 Pfam PF06776 Invasion associated locus B (IalB) protein 51 184 8.9E-40 T 23-04-2016 IPR010642 Invasion protein B RPE_RS09615 fe55103c0641c2792763114f7208efc6 187 Pfam PF05135 Phage gp6-like head-tail connector protein 15 53 1.4E-6 T 23-04-2016 IPR021146 Phage gp6-like head-tail connector protein RPE_RS09615 fe55103c0641c2792763114f7208efc6 187 TIGRFAM TIGR02215 phage_chp_gp8: phage conserved hypothetical protein, phiE125 gp8 family 1 187 3.7E-58 T 23-04-2016 IPR011738 Phage conserved hypothetical protein RPE_RS04565 a6509b2a8101191d5c711ce064ad6662 308 Gene3D G3DSA:2.40.50.100 83 141 4.4E-6 T 23-04-2016 RPE_RS04565 a6509b2a8101191d5c711ce064ad6662 308 SUPERFAMILY SSF51230 81 154 8.25E-7 T 23-04-2016 IPR011053 Single hybrid motif RPE_RS04565 a6509b2a8101191d5c711ce064ad6662 308 PANTHER PTHR30097 77 307 1.3E-38 T 23-04-2016 RPE_RS04565 a6509b2a8101191d5c711ce064ad6662 308 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 118 221 6.2E-10 T 23-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RPE_RS07060 2d287eb4434af02172721a828b452f87 173 Gene3D G3DSA:3.40.630.30 14 153 2.6E-15 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS07060 2d287eb4434af02172721a828b452f87 173 SUPERFAMILY SSF55729 14 151 3.78E-17 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS07060 2d287eb4434af02172721a828b452f87 173 Pfam PF00583 Acetyltransferase (GNAT) family 52 145 4.1E-8 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RPE_RS07060 2d287eb4434af02172721a828b452f87 173 PANTHER PTHR36449 5 170 6.7E-35 T 23-04-2016 RPE_RS13260 0ee8c0a7fa710308e6f8e551a0e77514 66 SUPERFAMILY SSF56935 4 41 2.7E-7 T 23-04-2016 RPE_RS13260 0ee8c0a7fa710308e6f8e551a0e77514 66 Gene3D G3DSA:2.170.130.10 4 39 1.1E-6 T 23-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 RPE_RS23705 437289cb24d8220e9bf91c7998851d4b 186 Pfam PF11188 Protein of unknown function (DUF2975) 69 183 1.6E-12 T 23-04-2016 IPR021354 Protein of unknown function DUF2975 RPE_RS03390 844a900ae3362cbb98f8515fe8c7e25f 185 Pfam PF14295 PAN domain 116 167 9.9E-16 T 23-04-2016 IPR003609 PAN/Apple domain RPE_RS03390 844a900ae3362cbb98f8515fe8c7e25f 185 Pfam PF14295 PAN domain 33 83 4.6E-16 T 23-04-2016 IPR003609 PAN/Apple domain RPE_RS03390 844a900ae3362cbb98f8515fe8c7e25f 185 Gene3D G3DSA:3.50.4.10 26 100 1.6E-10 T 23-04-2016 RPE_RS03390 844a900ae3362cbb98f8515fe8c7e25f 185 Gene3D G3DSA:3.50.4.10 108 183 2.0E-10 T 23-04-2016 RPE_RS15915 56be85a06c382739e0a40d66e6d138b6 61 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 21 53 1.2E-8 T 23-04-2016 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.17.4.2|KEGG: 00240+1.17.4.2|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 RPE_RS12370 b8b2ff0b50a5c3987f2125eedca85923 166 SUPERFAMILY SSF56019 6 163 2.75E-20 T 23-04-2016 IPR003511 HORMA domain RPE_RS01215 4cccb626846575b10a0a5d42572ba187 221 SMART SM00091 70 138 4.4E-4 T 23-04-2016 IPR000014 PAS domain RPE_RS01215 4cccb626846575b10a0a5d42572ba187 221 Pfam PF08448 PAS fold 77 197 9.8E-8 T 23-04-2016 IPR013656 PAS fold-4 RPE_RS01215 4cccb626846575b10a0a5d42572ba187 221 Gene3D G3DSA:3.30.450.20 69 196 5.5E-14 T 23-04-2016 RPE_RS01215 4cccb626846575b10a0a5d42572ba187 221 SUPERFAMILY SSF55785 68 188 9.07E-12 T 23-04-2016 IPR000014 PAS domain RPE_RS14850 5ec1b4fec104e175a442216eca0bdc9b 494 SUPERFAMILY SSF52129 15 263 1.11E-42 T 23-04-2016 IPR029030 Caspase-like domain RPE_RS14850 5ec1b4fec104e175a442216eca0bdc9b 494 PANTHER PTHR22576:SF31 27 433 2.2E-94 T 23-04-2016 RPE_RS14850 5ec1b4fec104e175a442216eca0bdc9b 494 PANTHER PTHR22576 27 433 2.2E-94 T 23-04-2016 RPE_RS14850 5ec1b4fec104e175a442216eca0bdc9b 494 Pfam PF00656 Caspase domain 29 256 3.1E-27 T 23-04-2016 RPE_RS14850 5ec1b4fec104e175a442216eca0bdc9b 494 Gene3D G3DSA:3.40.50.1460 26 164 1.1E-17 T 23-04-2016 IPR029030 Caspase-like domain RPE_RS20450 470edacb505eed2cb10c7e419bf07ff5 103 Gene3D G3DSA:2.40.10.220 1 82 2.6E-4 T 23-04-2016 RPE_RS20450 470edacb505eed2cb10c7e419bf07ff5 103 SUPERFAMILY SSF141371 1 83 9.81E-11 T 23-04-2016 RPE_RS20450 470edacb505eed2cb10c7e419bf07ff5 103 Pfam PF07238 PilZ domain 3 86 3.8E-12 T 23-04-2016 IPR009875 PilZ domain GO:0035438 RPE_RS08870 8466c8641267fb045944ffe6cf3ce62a 104 Pfam PF11011 Protein of unknown function (DUF2849) 15 99 1.8E-26 T 23-04-2016 IPR021270 Protein of unknown function DUF2849 RPE_RS07740 cc5f6abd265ebef8eeb6268574ba9034 164 Pfam PF03748 Flagellar basal body-associated protein FliL 66 164 8.9E-20 T 23-04-2016 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 RPE_RS07740 cc5f6abd265ebef8eeb6268574ba9034 164 PANTHER PTHR35091 6 164 1.2E-31 T 23-04-2016 RPE_RS24555 30a97dcc260904b3e6915031c7b31bac 76 SMART SM00834 1 40 2.3E-13 T 23-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain RPE_RS24555 30a97dcc260904b3e6915031c7b31bac 76 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 46 3.1E-15 T 23-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain RPE_RS24555 30a97dcc260904b3e6915031c7b31bac 76 Pfam PF09723 Zinc ribbon domain 1 39 4.9E-12 T 23-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain RPE_RS06185 7a9bcf5526d24e1e4a64fd58701e8215 94 Pfam PF12977 Domain of Unknown Function with PDB structure (DUF3861) 3 93 1.6E-26 T 23-04-2016 IPR024476 Protein of unknown function DUF3861 RPE_RS05955 12ccd85511145cbfd9b1b4a7f01bc33f 115 Pfam PF07309 Flagellar protein FlaF 4 114 2.4E-33 T 23-04-2016 IPR010845 Flagellar FlaF GO:0044781 RPE_RS06195 4a07d61b283914357039bb7ca943ce48 307 Pfam PF03929 PepSY-associated TM region 8 285 7.2E-24 T 23-04-2016 IPR005625 PepSY-associated TM protein RPE_RS12705 cb656817c9a46fdab118d7c4421c445f 212 PANTHER PTHR33269 1 197 4.9E-67 T 23-04-2016 RPE_RS12705 cb656817c9a46fdab118d7c4421c445f 212 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 18 166 2.0E-37 T 23-04-2016 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 RPE_RS12705 cb656817c9a46fdab118d7c4421c445f 212 PANTHER PTHR33269:SF4 1 197 4.9E-67 T 23-04-2016 RPE_RS18530 97baeffbc278d1697c3fb569f53d41ba 83 Pfam PF11730 Protein of unknown function (DUF3297) 9 79 9.3E-39 T 23-04-2016 IPR021724 Protein of unknown function DUF3297 RPE_RS18360 8204e3609dc518850c71ddad016efe08 138 Pfam PF09945 Predicted membrane protein (DUF2177) 5 123 2.2E-37 T 23-04-2016 IPR018687 Protein of unknown function DUF2177, membrane RPE_RS05950 0652e8725c9834d5b69ad87252dacdd7 347 Pfam PF00669 Bacterial flagellin N-terminal helical region 6 140 6.3E-30 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RPE_RS05950 0652e8725c9834d5b69ad87252dacdd7 347 SUPERFAMILY SSF64518 4 347 1.27E-31 T 23-04-2016 RPE_RS05950 0652e8725c9834d5b69ad87252dacdd7 347 Gene3D G3DSA:1.20.1330.10 252 303 1.5E-5 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RPE_RS05950 0652e8725c9834d5b69ad87252dacdd7 347 Gene3D G3DSA:1.20.1330.10 112 168 1.5E-5 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RPE_RS05950 0652e8725c9834d5b69ad87252dacdd7 347 Pfam PF00700 Bacterial flagellin C-terminal helical region 264 347 7.4E-24 T 23-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RPE_RS06510 0b70b26ac9553abff74b3027c56e83ae 88 Pfam PF10006 Uncharacterized conserved protein (DUF2249) 10 79 1.8E-20 T 23-04-2016 IPR018720 Domain of unknown function DUF2249 RPE_RS13135 7b4408618d87f267d661b762ce64c86f 199 Pfam PF14235 Domain of unknown function (DUF4337) 21 189 2.7E-39 T 23-04-2016 IPR025570 Protein of unknown function DUF4337 RPE_RS05700 9621f3e6bfc54df7cda1ca1d6d1c23dc 259 SUPERFAMILY SSF52540 4 175 9.81E-6 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS15600 d1be2ecb0e0735232b01984ca027cd85 368 PIRSF PIRSF007313 1 362 5.5E-155 T 23-04-2016 IPR008773 Phosphonate metabolism protein PhnI GO:0019634 RPE_RS15600 d1be2ecb0e0735232b01984ca027cd85 368 Pfam PF05861 Bacterial phosphonate metabolism protein (PhnI) 1 352 9.3E-160 T 23-04-2016 IPR008773 Phosphonate metabolism protein PhnI GO:0019634 RPE_RS04555 6f9a538c82d09b42e87d0a6c176e0795 617 PANTHER PTHR30441 1 615 2.9E-50 T 23-04-2016 RPE_RS04555 6f9a538c82d09b42e87d0a6c176e0795 617 Pfam PF13502 AsmA-like C-terminal region 330 526 1.4E-22 T 23-04-2016 IPR032712 AsmA-like, C-terminal RPE_RS04445 10841134c8a78193301b705c8af46157 73 Pfam PF09866 Uncharacterized protein conserved in bacteria (DUF2093) 24 65 6.0E-22 T 23-04-2016 IPR018661 Protein of unknown function DUF2093 RPE_RS03970 4bbf56dde9a0377aef6b4892c0d0e286 240 Pfam PF04172 LrgB-like family 23 236 3.5E-72 T 23-04-2016 IPR007300 CidB/LrgB family RPE_RS03970 4bbf56dde9a0377aef6b4892c0d0e286 240 PANTHER PTHR30249 1 238 7.1E-99 T 23-04-2016 RPE_RS03970 4bbf56dde9a0377aef6b4892c0d0e286 240 PANTHER PTHR30249:SF5 1 238 7.1E-99 T 23-04-2016 RPE_RS14655 a0e4b13f32c120dd66524860b0afa53f 150 PANTHER PTHR37953:SF1 1 150 1.5E-35 T 23-04-2016 RPE_RS14655 a0e4b13f32c120dd66524860b0afa53f 150 Pfam PF02643 Uncharacterized ACR, COG1430 41 143 8.2E-33 T 23-04-2016 IPR003795 Protein of unknown function DUF192 RPE_RS14655 a0e4b13f32c120dd66524860b0afa53f 150 PANTHER PTHR37953 1 150 1.5E-35 T 23-04-2016 RPE_RS03510 2942ef605b362492b8e57a5615b5153b 255 Pfam PF01925 Sulfite exporter TauE/SafE 16 246 1.9E-28 T 23-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 RPE_RS09305 f9565f66b87496a2b47137da482e3f69 114 PANTHER PTHR34139 1 107 4.6E-20 T 23-04-2016 RPE_RS09305 f9565f66b87496a2b47137da482e3f69 114 Gene3D G3DSA:1.20.120.580 67 106 7.8E-4 T 23-04-2016 RPE_RS09305 f9565f66b87496a2b47137da482e3f69 114 Pfam PF01934 Protein of unknown function DUF86 12 107 3.0E-22 T 23-04-2016 IPR008201 Protein of unknown function DUF86 RPE_RS12305 a78b5a38ce949f1dabbfce415e100446 153 SUPERFAMILY SSF54975 10 132 1.64E-34 T 23-04-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 RPE_RS12305 a78b5a38ce949f1dabbfce415e100446 153 SMART SM01034 11 107 7.7E-48 T 23-04-2016 IPR007024 BLUF domain GO:0009882|GO:0071949 RPE_RS12305 a78b5a38ce949f1dabbfce415e100446 153 Pfam PF04940 Sensors of blue-light using FAD 11 106 1.6E-28 T 23-04-2016 IPR007024 BLUF domain GO:0009882|GO:0071949 RPE_RS09440 0a878151939a3cd06389c85160ff51eb 87 Pfam PF13670 Peptidase propeptide and YPEB domain 7 84 8.4E-21 T 23-04-2016 IPR025711 PepSY domain RPE_RS15525 5390ed37d70ee833f8d41a0e69989b92 294 SUPERFAMILY SSF47240 17 165 3.41E-10 T 23-04-2016 IPR009078 Ferritin-like superfamily RPE_RS15525 5390ed37d70ee833f8d41a0e69989b92 294 Gene3D G3DSA:1.20.1260.10 17 148 9.7E-6 T 23-04-2016 IPR012347 Ferritin-related RPE_RS23725 6f3da703d915812f210038623dbea222 437 Pfam PF10011 Predicted membrane protein (DUF2254) 14 375 3.2E-112 T 23-04-2016 IPR018723 Protein of unknown function DUF2254, membrane RPE_RS07950 917ef476986bf4a3597620f2c292d5a4 356 Pfam PF13480 Acetyltransferase (GNAT) domain 162 292 5.7E-22 T 23-04-2016 RPE_RS07950 917ef476986bf4a3597620f2c292d5a4 356 SUPERFAMILY SSF55729 158 291 6.89E-10 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS23100 8f9d1c59959311e8bc565535b7a929e7 39 Pfam PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) 16 39 2.4E-11 T 23-04-2016 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 RPE_RS23100 8f9d1c59959311e8bc565535b7a929e7 39 TIGRFAM TIGR02115 potass_kdpF: K+-transporting ATPase, F subunit 17 39 1.7E-9 T 23-04-2016 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 RPE_RS12780 34e41811cdc0845010fd6a47f99e6eee 79 Pfam PF12071 Protein of unknown function (DUF3551) 1 68 1.6E-16 T 23-04-2016 IPR021937 Protein of unknown function DUF3551 RPE_RS20085 2e7413a3061ab6da6c89dc3b0f883506 121 TIGRFAM TIGR04360 other_trbK: conjugative transfer region protein TrbK 10 83 4.9E-23 T 23-04-2016 IPR027587 Conjugative transfer region protein TrbK RPE_RS14170 538c19b9e93a5b6de8eb4c912b896c78 300 Gene3D G3DSA:3.40.50.1820 40 272 6.8E-25 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS14170 538c19b9e93a5b6de8eb4c912b896c78 300 Pfam PF00326 Prolyl oligopeptidase family 103 189 4.3E-7 T 23-04-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 RPE_RS14170 538c19b9e93a5b6de8eb4c912b896c78 300 SUPERFAMILY SSF53474 26 296 4.09E-31 T 23-04-2016 IPR029058 Alpha/Beta hydrolase fold RPE_RS15520 fdc60b06c50dde2b17c50f75d8a0bc1d 86 Pfam PF10006 Uncharacterized conserved protein (DUF2249) 15 83 5.3E-23 T 23-04-2016 IPR018720 Domain of unknown function DUF2249 RPE_RS17055 fc771c003a541780095e37fcf8eb3ba5 487 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 38 198 1.2E-20 T 23-04-2016 RPE_RS17055 fc771c003a541780095e37fcf8eb3ba5 487 PANTHER PTHR33908:SF2 16 440 4.6E-29 T 23-04-2016 RPE_RS17055 fc771c003a541780095e37fcf8eb3ba5 487 PANTHER PTHR33908 16 440 4.6E-29 T 23-04-2016 RPE_RS24200 0a7d732e6e6f03513c226567be353821 119 PIRSF PIRSF007028 1 119 6.4E-50 T 23-04-2016 IPR009874 Protein of unknown function DUF1428 RPE_RS24200 0a7d732e6e6f03513c226567be353821 119 Pfam PF07237 Protein of unknown function (DUF1428) 2 104 4.9E-41 T 23-04-2016 IPR009874 Protein of unknown function DUF1428 RPE_RS24200 0a7d732e6e6f03513c226567be353821 119 Gene3D G3DSA:3.30.70.900 1 118 8.4E-47 T 23-04-2016 RPE_RS24200 0a7d732e6e6f03513c226567be353821 119 SUPERFAMILY SSF54909 1 118 6.43E-45 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RPE_RS19875 38fee6be4866b743fceda9a52d5e2d4a 124 Gene3D G3DSA:3.30.420.130 1 113 2.4E-14 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis RPE_RS19875 38fee6be4866b743fceda9a52d5e2d4a 124 SUPERFAMILY SSF53146 1 111 7.98E-22 T 23-04-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis RPE_RS24740 1d9a2480a0f137424b10a019d1be90bc 266 SUPERFAMILY SSF54909 145 246 9.47E-15 T 23-04-2016 IPR011008 Dimeric alpha-beta barrel RPE_RS24740 1d9a2480a0f137424b10a019d1be90bc 266 Gene3D G3DSA:3.30.70.900 144 238 1.7E-14 T 23-04-2016 RPE_RS24740 1d9a2480a0f137424b10a019d1be90bc 266 TIGRFAM TIGR02118 TIGR02118: conserved hypothetical protein 148 230 5.5E-8 T 23-04-2016 IPR009799 EthD domain RPE_RS15130 01d4d0151039089d1e0364496acb3a03 100 Pfam PF04226 Transglycosylase associated protein 38 85 1.1E-13 T 23-04-2016 IPR007341 Transglycosylase-associated protein GO:0016021 RPE_RS05170 d647108fd8ed02094116ab5406f9798c 89 Pfam PF06412 Conjugal transfer protein TraD 5 70 6.7E-24 T 23-04-2016 IPR009444 Conjugal transfer, TraD, alpha-type GO:0000746 RPE_RS21410 a2fd2c20f6f32e5b8940c468023f54f0 224 Pfam PF10090 Histidine phosphotransferase 42 221 3.0E-65 T 23-04-2016 IPR018762 Histidine phosphotransferase RPE_RS20045 7e0480bbd46d946e3bdb1624ce688abf 80 Pfam PF10038 Protein of unknown function (DUF2274) 1 70 4.3E-35 T 23-04-2016 IPR018733 Protein of unknown function DUF2274 RPE_RS09400 1567c3b94dd9a2cdd4a30c66ccb3e31b 138 Pfam PF05443 ROS/MUCR transcriptional regulator protein 9 130 3.4E-49 T 23-04-2016 IPR008807 ROSMUCR transcriptional regulator GO:0003677|GO:0006355|GO:0008270 RPE_RS16740 473d61339819f44b2e9d60559111c994 208 PANTHER PTHR36926 2 207 1.3E-62 T 23-04-2016 RPE_RS16740 473d61339819f44b2e9d60559111c994 208 Pfam PF02674 Colicin V production protein 6 146 4.0E-30 T 23-04-2016 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 RPE_RS16740 473d61339819f44b2e9d60559111c994 208 PANTHER PTHR36926:SF1 2 207 1.3E-62 T 23-04-2016 RPE_RS20000 2d4cd6782b41b2ea7a7d65d16f41bc49 332 SUPERFAMILY SSF50494 9 134 1.11E-5 T 23-04-2016 IPR009003 Peptidase S1, PA clan RPE_RS07405 41cfe07b85574872a482ec29755b2112 377 PANTHER PTHR30188 37 376 1.1E-161 T 23-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 RPE_RS07405 41cfe07b85574872a482ec29755b2112 377 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 140 373 1.1E-66 T 23-04-2016 IPR003453 ABC transport permease subunit MlaE, Proteobacteria RPE_RS07405 41cfe07b85574872a482ec29755b2112 377 PANTHER PTHR30188:SF3 37 376 1.1E-161 T 23-04-2016 RPE_RS07405 41cfe07b85574872a482ec29755b2112 377 Gene3D G3DSA:3.30.750.24 40 90 4.5E-5 T 23-04-2016 IPR002645 STAS domain RPE_RS07405 41cfe07b85574872a482ec29755b2112 377 Pfam PF02405 Permease MlaE 161 370 1.6E-68 T 23-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 RPE_RS07405 41cfe07b85574872a482ec29755b2112 377 SUPERFAMILY SSF52091 12 93 4.91E-7 T 23-04-2016 IPR002645 STAS domain RPE_RS00815 e6e465bd9614aa1b2274c207c7a18e13 251 Pfam PF13763 Domain of unknown function (DUF4167) 15 95 4.5E-28 T 23-04-2016 IPR025430 Domain of unknown function DUF4167 RPE_RS00095 4c249a2a8b128d19d75192c0bf8d7741 245 Gene3D G3DSA:3.40.50.720 6 230 1.8E-39 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS00095 4c249a2a8b128d19d75192c0bf8d7741 245 Pfam PF00106 short chain dehydrogenase 7 198 1.2E-27 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00095 4c249a2a8b128d19d75192c0bf8d7741 245 SUPERFAMILY SSF51735 6 233 2.15E-39 T 23-04-2016 IPR016040 NAD(P)-binding domain RPE_RS00095 4c249a2a8b128d19d75192c0bf8d7741 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 3.8E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00095 4c249a2a8b128d19d75192c0bf8d7741 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 3.8E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00095 4c249a2a8b128d19d75192c0bf8d7741 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 3.8E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00095 4c249a2a8b128d19d75192c0bf8d7741 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 3.8E-7 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00095 4c249a2a8b128d19d75192c0bf8d7741 245 PANTHER PTHR24322 153 185 9.3E-47 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00095 4c249a2a8b128d19d75192c0bf8d7741 245 PANTHER PTHR24322 10 137 9.3E-47 T 23-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RPE_RS00095 4c249a2a8b128d19d75192c0bf8d7741 245 PANTHER PTHR24322:SF360 153 185 9.3E-47 T 23-04-2016 RPE_RS00095 4c249a2a8b128d19d75192c0bf8d7741 245 PANTHER PTHR24322:SF360 10 137 9.3E-47 T 23-04-2016 RPE_RS19260 e28528b9a88d78b75a0fe74d00504764 411 PANTHER PTHR30482 36 302 1.7E-57 T 23-04-2016 RPE_RS19260 e28528b9a88d78b75a0fe74d00504764 411 PANTHER PTHR30482 327 380 1.7E-57 T 23-04-2016 RPE_RS19260 e28528b9a88d78b75a0fe74d00504764 411 PANTHER PTHR30482:SF8 36 302 1.7E-57 T 23-04-2016 RPE_RS19260 e28528b9a88d78b75a0fe74d00504764 411 PANTHER PTHR30482:SF8 327 380 1.7E-57 T 23-04-2016 RPE_RS19260 e28528b9a88d78b75a0fe74d00504764 411 Pfam PF02653 Branched-chain amino acid transport system / permease component 36 308 8.1E-37 T 23-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RPE_RS12190 b649728d0350891aecba918ec82458fe 720 Gene3D G3DSA:3.30.420.10 331 501 3.7E-20 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RPE_RS12190 b649728d0350891aecba918ec82458fe 720 SUPERFAMILY SSF53098 332 502 9.1E-14 T 23-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RPE_RS12190 b649728d0350891aecba918ec82458fe 720 Pfam PF00665 Integrase core domain 328 442 7.2E-9 T 23-04-2016 IPR001584 Integrase, catalytic core GO:0015074 RPE_RS12190 b649728d0350891aecba918ec82458fe 720 Pfam PF09299 Mu transposase, C-terminal 530 578 3.4E-5 T 23-04-2016 IPR015378 Transposase-like, Mu, C-terminal RPE_RS24145 bc6c43d6238462953dbf1bf3646873d6 326 Pfam PF13717 zinc-ribbon domain 1 35 4.2E-12 T 23-04-2016 RPE_RS24145 bc6c43d6238462953dbf1bf3646873d6 326 TIGRFAM TIGR02098 MJ0042_CXXC: MJ0042 family finger-like domain 1 38 1.7E-15 T 23-04-2016 IPR011723 Zinc finger/thioredoxin putative RPE_RS05175 45ec5e05650fadaf480724a4818f698b 112 Pfam PF06412 Conjugal transfer protein TraD 20 78 2.4E-16 T 23-04-2016 IPR009444 Conjugal transfer, TraD, alpha-type GO:0000746 RPE_RS19485 109a5218c2b4da0963ada1f115e656cf 107 Pfam PF03413 Peptidase propeptide and YPEB domain 49 102 3.1E-6 T 23-04-2016 IPR025711 PepSY domain RPE_RS10820 7031864a80e0d723542b3eb8279e9cc2 681 Gene3D G3DSA:1.10.443.10 317 487 1.6E-9 T 23-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 RPE_RS10820 7031864a80e0d723542b3eb8279e9cc2 681 SUPERFAMILY SSF56349 318 491 3.24E-12 T 23-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RPE_RS24825 1e1372c9c0e4147a0575aa185b97b848 334 Gene3D G3DSA:1.25.40.10 239 327 2.7E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS24825 1e1372c9c0e4147a0575aa185b97b848 334 SUPERFAMILY SSF81901 242 318 4.45E-6 T 23-04-2016 RPE_RS11330 53b1b61693e7afb52c4c36338acc8b85 417 PANTHER PTHR22935:SF77 3 412 2.3E-121 T 23-04-2016 RPE_RS11330 53b1b61693e7afb52c4c36338acc8b85 417 PANTHER PTHR22935 3 412 2.3E-121 T 23-04-2016 RPE_RS11330 53b1b61693e7afb52c4c36338acc8b85 417 Gene3D G3DSA:3.40.710.10 7 409 3.7E-92 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS11330 53b1b61693e7afb52c4c36338acc8b85 417 SUPERFAMILY SSF56601 24 409 8.45E-97 T 23-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RPE_RS11330 53b1b61693e7afb52c4c36338acc8b85 417 Pfam PF00144 Beta-lactamase 32 404 9.6E-75 T 23-04-2016 IPR001466 Beta-lactamase-related RPE_RS07700 d1ac1d50578a5b00124adfaae5445b56 378 Hamap MF_00416 Flagellar P-ring protein [flgI]. 16 378 36.37 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RPE_RS07700 d1ac1d50578a5b00124adfaae5445b56 378 PRINTS PR01010 Flagellar P-ring protein signature 96 115 7.8E-81 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RPE_RS07700 d1ac1d50578a5b00124adfaae5445b56 378 PRINTS PR01010 Flagellar P-ring protein signature 201 219 7.8E-81 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RPE_RS07700 d1ac1d50578a5b00124adfaae5445b56 378 PRINTS PR01010 Flagellar P-ring protein signature 265 277 7.8E-81 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RPE_RS07700 d1ac1d50578a5b00124adfaae5445b56 378 PRINTS PR01010 Flagellar P-ring protein signature 71 86 7.8E-81 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RPE_RS07700 d1ac1d50578a5b00124adfaae5445b56 378 PRINTS PR01010 Flagellar P-ring protein signature 175 193 7.8E-81 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RPE_RS07700 d1ac1d50578a5b00124adfaae5445b56 378 PRINTS PR01010 Flagellar P-ring protein signature 118 135 7.8E-81 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RPE_RS07700 d1ac1d50578a5b00124adfaae5445b56 378 PRINTS PR01010 Flagellar P-ring protein signature 36 51 7.8E-81 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RPE_RS07700 d1ac1d50578a5b00124adfaae5445b56 378 PRINTS PR01010 Flagellar P-ring protein signature 135 153 7.8E-81 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RPE_RS07700 d1ac1d50578a5b00124adfaae5445b56 378 PRINTS PR01010 Flagellar P-ring protein signature 51 66 7.8E-81 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RPE_RS07700 d1ac1d50578a5b00124adfaae5445b56 378 PANTHER PTHR30381 1 378 5.3E-174 T 23-04-2016 RPE_RS07700 d1ac1d50578a5b00124adfaae5445b56 378 PANTHER PTHR30381:SF0 1 378 5.3E-174 T 23-04-2016 RPE_RS07700 d1ac1d50578a5b00124adfaae5445b56 378 Pfam PF02119 Flagellar P-ring protein 36 377 3.8E-140 T 23-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 RPE_RS11770 9a0a77b17045719608254a71328cb5f5 220 Pfam PF08843 Nucleotidyl transferase AbiEii toxin, Type IV TA system 22 194 1.1E-9 T 23-04-2016 IPR014942 Nucleotidyl transferase AbiEii toxin, Type IV TA system RPE_RS11065 6ada497c309b7e80123383f4f2e99a8c 77 SUPERFAMILY SSF89447 1 54 3.66E-10 T 23-04-2016 RPE_RS11065 6ada497c309b7e80123383f4f2e99a8c 77 Gene3D G3DSA:2.10.260.10 1 39 2.4E-13 T 23-04-2016 RPE_RS11065 6ada497c309b7e80123383f4f2e99a8c 77 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 4 37 4.6E-7 T 23-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 RPE_RS11065 6ada497c309b7e80123383f4f2e99a8c 77 SMART SM00966 4 50 1.9E-7 T 23-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 RPE_RS09695 ba939255a7250e54b52bc65554fde59b 156 PIRSF PIRSF002721 1 155 1.8E-41 T 23-04-2016 IPR016364 Surface antigen, Rickettsia type RPE_RS09695 ba939255a7250e54b52bc65554fde59b 156 Pfam PF16998 17 kDa outer membrane surface antigen 75 152 4.1E-9 T 23-04-2016 IPR032635 Surface antigen domain RPE_RS20820 1f4f6a982692ae066ad0d686ed123918 277 Gene3D G3DSA:2.40.160.20 44 262 6.3E-32 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RPE_RS20820 1f4f6a982692ae066ad0d686ed123918 277 Pfam PF13505 Outer membrane protein beta-barrel domain 36 261 1.8E-13 T 23-04-2016 IPR027385 Outer membrane protein beta-barrel RPE_RS20820 1f4f6a982692ae066ad0d686ed123918 277 SUPERFAMILY SSF56925 42 262 2.33E-27 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RPE_RS10195 f41a67dc30b76d0eed28638d81821430 391 Pfam PF05762 VWA domain containing CoxE-like protein 187 272 8.7E-9 T 23-04-2016 IPR008912 Uncharacterised protein family CoxE-like RPE_RS16325 a6c1b2f845dff0684984ec3760021fef 286 Pfam PF08843 Nucleotidyl transferase AbiEii toxin, Type IV TA system 30 245 4.3E-38 T 23-04-2016 IPR014942 Nucleotidyl transferase AbiEii toxin, Type IV TA system RPE_RS16835 8da16099dfc05adcd64402a96967e440 95 Pfam PF14384 BrnA antitoxin of type II toxin-antitoxin system 23 88 1.7E-19 T 23-04-2016 IPR025528 BrnA antitoxin of type II toxin-antitoxin system RPE_RS20090 12a14324a3fbafee8c6eb81f9b6ca131 242 TIGRFAM TIGR02780 TrbJ_Ti: P-type conjugative transfer protein TrbJ 7 240 5.0E-56 T 23-04-2016 IPR014147 Type IV conjugative transfer protein TrbJ RPE_RS20950 a5eb7bee48a57b2cf662fa6a2ec95f64 103 Gene3D G3DSA:3.40.30.10 18 71 7.7E-4 T 23-04-2016 IPR012336 Thioredoxin-like fold RPE_RS14635 cdcf6db37aa1a513e41f5a1953514d63 417 PANTHER PTHR38592 1 398 2.3E-137 T 23-04-2016 RPE_RS14635 cdcf6db37aa1a513e41f5a1953514d63 417 Pfam PF10129 OpgC protein 12 368 9.4E-133 T 23-04-2016 IPR014550 Uncharacterised conserved protein UCP028704, OpgC RPE_RS14635 cdcf6db37aa1a513e41f5a1953514d63 417 PIRSF PIRSF028704 1 390 5.1E-143 T 23-04-2016 IPR014550 Uncharacterised conserved protein UCP028704, OpgC RPE_RS13195 fbce11819c3e5618064a03458dccdeb6 497 Pfam PF02530 Porin subfamily 25 489 2.6E-132 T 23-04-2016 IPR003684 Porin, alpha proteobacteria type GO:0006810|GO:0015288|GO:0016020 RPE_RS11275 7968f80d88d91ebb38c6958afa0e1039 104 SUPERFAMILY SSF46626 1 102 3.73E-14 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS11275 7968f80d88d91ebb38c6958afa0e1039 104 Gene3D G3DSA:1.10.760.10 22 102 6.1E-8 T 23-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RPE_RS13370 f8d98f73d5dd335c744b0a96a6ee2cc1 344 Pfam PF05137 Fimbrial assembly protein (PilN) 266 337 8.1E-9 T 23-04-2016 IPR007813 Fimbrial assembly PilN RPE_RS21735 92e67695c2d545c7cd5b35f9ee1bd77c 124 Gene3D G3DSA:2.60.120.10 20 122 8.9E-18 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS21735 92e67695c2d545c7cd5b35f9ee1bd77c 124 Pfam PF07883 Cupin domain 51 114 2.8E-10 T 23-04-2016 IPR013096 Cupin 2, conserved barrel RPE_RS21735 92e67695c2d545c7cd5b35f9ee1bd77c 124 SUPERFAMILY SSF51182 16 122 3.22E-20 T 23-04-2016 IPR011051 RmlC-like cupin domain RPE_RS11735 156da1ef513127f47070c48065687520 315 Pfam PF14096 Domain of unknown function (DUF4274) 151 223 2.5E-8 T 23-04-2016 IPR025369 Domain of unknown function DUF4274 RPE_RS03230 fec1afbe024be24012de094839e02ca4 125 Pfam PF04241 Protein of unknown function (DUF423) 24 105 9.9E-9 T 23-04-2016 IPR006696 Protein of unknown function DUF423 RPE_RS09300 a3aedd7fc5de20a176f0abc58b4c1516 261 Gene3D G3DSA:3.30.565.40 63 136 1.7E-4 T 23-04-2016 IPR025303 Domain of unknown function DUF4163 RPE_RS11890 b86e3021e648f4aac87a7140b6933052 330 Pfam PF01757 Acyltransferase family 1 297 1.3E-31 T 23-04-2016 IPR002656 Acyltransferase 3 GO:0016747 RPE_RS19040 8458a01f478c6519c5e83883095597cf 341 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 37 312 8.4E-35 T 23-04-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 RPE_RS19040 8458a01f478c6519c5e83883095597cf 341 PANTHER PTHR33376 1 335 2.0E-61 T 23-04-2016 RPE_RS19040 8458a01f478c6519c5e83883095597cf 341 PANTHER PTHR33376:SF5 1 335 2.0E-61 T 23-04-2016 RPE_RS24415 d5d79f000c873cb90589f9638b0dd2ed 169 Pfam PF07750 GcrA cell cycle regulator 5 163 2.1E-62 T 23-04-2016 IPR011681 GcrA cell cycle regulator RPE_RS09475 48e23544687189d845f041b2a8b54597 54 Pfam PF04964 Flp/Fap pilin component 8 53 1.0E-12 T 23-04-2016 IPR007047 Flp/Fap pilin component RPE_RS00890 3cca89ef5e2c6875ebcdefac2fcda5df 226 Pfam PF07077 Protein of unknown function (DUF1345) 51 217 4.1E-59 T 23-04-2016 IPR009781 Protein of unknown function DUF1345 RPE_RS05285 dc81365be722d26dc607c2a00467057f 107 SUPERFAMILY SSF51182 7 107 4.31E-15 T 23-04-2016 IPR011051 RmlC-like cupin domain RPE_RS05285 dc81365be722d26dc607c2a00467057f 107 Gene3D G3DSA:2.60.120.10 17 106 1.2E-35 T 23-04-2016 IPR014710 RmlC-like jelly roll fold RPE_RS05285 dc81365be722d26dc607c2a00467057f 107 Pfam PF07883 Cupin domain 37 104 7.2E-8 T 23-04-2016 IPR013096 Cupin 2, conserved barrel RPE_RS20865 a9c488efd3824846c03ed6966336e714 400 PANTHER PTHR11751:SF306 14 399 1.1E-170 T 23-04-2016 RPE_RS20865 a9c488efd3824846c03ed6966336e714 400 Pfam PF00155 Aminotransferase class I and II 32 392 2.5E-75 T 23-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RPE_RS20865 a9c488efd3824846c03ed6966336e714 400 SUPERFAMILY SSF53383 1 398 1.07E-110 T 23-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RPE_RS20865 a9c488efd3824846c03ed6966336e714 400 PANTHER PTHR11751 14 399 1.1E-170 T 23-04-2016 RPE_RS20865 a9c488efd3824846c03ed6966336e714 400 Gene3D G3DSA:3.40.640.10 45 275 6.9E-73 T 23-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RPE_RS20865 a9c488efd3824846c03ed6966336e714 400 Gene3D G3DSA:3.90.1150.10 276 399 4.9E-47 T 23-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RPE_RS11765 fe2fb3c3eb42d64877948035d7b31a36 310 Gene3D G3DSA:3.90.226.10 90 195 5.2E-6 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS11765 fe2fb3c3eb42d64877948035d7b31a36 310 SUPERFAMILY SSF52096 85 199 4.47E-9 T 23-04-2016 IPR029045 ClpP/crotonase-like domain RPE_RS01850 f7b0b94fafef415108afb324a49434da 165 Pfam PF10947 Protein of unknown function (DUF2628) 22 100 8.8E-18 T 23-04-2016 IPR024399 Protein of unknown function DUF2628 RPE_RS11640 3c2a37a7a77c6523dd21d330b2cab351 492 Pfam PF02530 Porin subfamily 25 484 2.4E-127 T 23-04-2016 IPR003684 Porin, alpha proteobacteria type GO:0006810|GO:0015288|GO:0016020 RPE_RS14690 f2fe70298d32a62218664c637acc41ff 87 Pfam PF12071 Protein of unknown function (DUF3551) 2 71 3.8E-28 T 23-04-2016 IPR021937 Protein of unknown function DUF3551 RPE_RS23545 9df13078e0229c9283b100f3d3ac5d41 158 Pfam PF11014 Protein of unknown function (DUF2852) 26 145 3.0E-46 T 23-04-2016 IPR021273 Protein of unknown function DUF2852 RPE_RS24010 05f252c71ed08f791ab10292904b7cd4 215 PIRSF PIRSF008159 1 215 1.3E-63 T 23-04-2016 IPR016537 Uncharacterised conserved protein UCP008159, RPE_RS24010 05f252c71ed08f791ab10292904b7cd4 215 Pfam PF06226 Protein of unknown function (DUF1007) 14 214 7.4E-69 T 23-04-2016 IPR010412 Protein of unknown function DUF1007 RPE_RS05615 61a249d5da21cc512c356080407d0c7d 393 Pfam PF01757 Acyltransferase family 6 321 8.4E-24 T 23-04-2016 IPR002656 Acyltransferase 3 GO:0016747 RPE_RS09535 029f1083244e6fa590356efab748eaa0 239 Pfam PF07238 PilZ domain 117 191 4.3E-5 T 23-04-2016 IPR009875 PilZ domain GO:0035438 RPE_RS09535 029f1083244e6fa590356efab748eaa0 239 SUPERFAMILY SSF141371 113 189 9.22E-6 T 23-04-2016 RPE_RS21495 2069ab690353ab69fb8caa2e5d9dd2aa 268 Pfam PF11150 Protein of unknown function (DUF2927) 50 251 1.9E-56 T 23-04-2016 IPR021323 Protein of unknown function DUF2927 RPE_RS07110 4b664e39fa4ff1631e813796d498b76c 148 SMART SM00953 11 135 2.4E-30 T 23-04-2016 IPR014914 RES domain RPE_RS07110 4b664e39fa4ff1631e813796d498b76c 148 Pfam PF08808 RES domain 3 135 1.9E-22 T 23-04-2016 IPR014914 RES domain RPE_RS00920 5111f9d289867436628126b4e8e5aff0 92 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 3 91 3.5E-13 T 23-04-2016 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family RPE_RS00920 5111f9d289867436628126b4e8e5aff0 92 PANTHER PTHR33755 1 91 1.7E-13 T 23-04-2016 RPE_RS14080 cbc5e4e02f1e6e799445509a28d2ba6d 86 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 2 84 8.4E-15 T 23-04-2016 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family RPE_RS21070 0dde8ac6d6c66a7ed23629cdc2002dbb 338 PANTHER PTHR22926:SF3 14 337 2.6E-52 T 23-04-2016 RPE_RS21070 0dde8ac6d6c66a7ed23629cdc2002dbb 338 PANTHER PTHR22926 14 337 2.6E-52 T 23-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RPE_RS21070 0dde8ac6d6c66a7ed23629cdc2002dbb 338 Pfam PF00953 Glycosyl transferase family 4 85 232 2.3E-29 T 23-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RPE_RS19085 99ec88f4bc948a6088f1a0a3b97fc069 116 Pfam PF11750 Protein of unknown function (DUF3307) 4 106 1.2E-10 T 23-04-2016 IPR021737 Bacteriophage phiKZ, Orf197 RPE_RS22165 0d04d2705e2b90ace43345b77fe7c837 261 Gene3D G3DSA:3.40.50.300 6 175 5.9E-5 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS22165 0d04d2705e2b90ace43345b77fe7c837 261 SUPERFAMILY SSF52540 4 179 9.93E-8 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS11965 ff6a8ea66acd6d885ee93a694402d2a5 123 Gene3D G3DSA:3.40.50.1010 13 108 1.3E-19 T 23-04-2016 IPR029060 PIN domain-like RPE_RS11965 ff6a8ea66acd6d885ee93a694402d2a5 123 SUPERFAMILY SSF88723 3 105 5.89E-13 T 23-04-2016 IPR029060 PIN domain-like RPE_RS12515 9a740b7404f134a387ac93894c016823 255 Pfam PF06114 Domain of unknown function (DUF955) 30 152 8.2E-9 T 23-04-2016 IPR010359 HTH domain, IrrE-type RPE_RS21505 55a1c11c4d158672d15817f64ea9657e 385 Pfam PF05987 Bacterial protein of unknown function (DUF898) 12 219 1.6E-58 T 23-04-2016 IPR010295 Protein of unknown function DUF898 RPE_RS21505 55a1c11c4d158672d15817f64ea9657e 385 Pfam PF05987 Bacterial protein of unknown function (DUF898) 221 378 9.2E-12 T 23-04-2016 IPR010295 Protein of unknown function DUF898 RPE_RS09635 f80eeb42e186bbed904a0743f507622f 106 Pfam PF11836 Phage tail tube protein, GTA-gp10 6 101 2.6E-26 T 23-04-2016 IPR021791 Phage tail tube protein, GTA-gp10 RPE_RS13945 ebc4444227b5ebcccbe73731d22b5326 202 Pfam PF01391 Collagen triple helix repeat (20 copies) 142 199 3.9E-8 T 23-04-2016 IPR008160 Collagen triple helix repeat RPE_RS13945 ebc4444227b5ebcccbe73731d22b5326 202 Pfam PF01391 Collagen triple helix repeat (20 copies) 96 154 5.5E-10 T 23-04-2016 IPR008160 Collagen triple helix repeat RPE_RS13945 ebc4444227b5ebcccbe73731d22b5326 202 PANTHER PTHR24023 96 201 6.2E-22 T 23-04-2016 RPE_RS19920 7c87622ebb99a361402c195081556713 124 ProDom PD396235 MEMBRANE PM1478 TRANSMEMBRANE 1 112 6.0E-40 T 23-04-2016 RPE_RS03565 1064ebc3add876e19a5e6b744fb43941 283 Pfam PF11412 Disulphide bond corrector protein DsbC 61 160 1.3E-19 T 23-04-2016 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain RPE_RS04170 ce9197a5341685e5f7e175b37bf73bb7 78 Pfam PF11455 Protein of unknown function (DUF3018) 15 77 5.8E-20 T 23-04-2016 IPR021558 Protein of unknown function DUF3018 RPE_RS22405 c2a83b40b5f7084cfd232ad3351988ed 147 Pfam PF11164 Protein of unknown function (DUF2948) 5 133 3.5E-39 T 23-04-2016 IPR021335 Protein of unknown function DUF2948 RPE_RS11690 8fcbaf585911dfb03826d99317e79638 182 Pfam PF07310 PAS domain 1 135 7.9E-43 T 23-04-2016 IPR009922 Protein of unknown function DUF1457 RPE_RS11690 8fcbaf585911dfb03826d99317e79638 182 PIRSF PIRSF031878 1 182 3.7E-46 T 23-04-2016 IPR009922 Protein of unknown function DUF1457 RPE_RS05580 2362877efd8d7e54bba6f481bbcbb30b 174 Gene3D G3DSA:3.40.50.150 4 171 9.7E-50 T 23-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RPE_RS14575 0aa414ce24ecf506e7b64daa103da380 304 Pfam PF09955 Predicted integral membrane protein (DUF2189) 80 206 2.9E-37 T 23-04-2016 IPR018692 Predicted integral membrane protein DUF2189 RPE_RS16335 847205681ff337bd2e817d35beb68d2e 112 Pfam PF06412 Conjugal transfer protein TraD 20 78 1.6E-18 T 23-04-2016 IPR009444 Conjugal transfer, TraD, alpha-type GO:0000746 RPE_RS24490 d7b8d94b6c490c2b7ea9031899a08e87 121 Pfam PF03413 Peptidase propeptide and YPEB domain 63 115 3.6E-7 T 23-04-2016 IPR025711 PepSY domain RPE_RS15385 bb8a6327a13bbe18d89b8f9b45354753 168 Gene3D G3DSA:1.20.120.520 8 157 4.2E-14 T 23-04-2016 RPE_RS15385 bb8a6327a13bbe18d89b8f9b45354753 168 Pfam PF01814 Hemerythrin HHE cation binding domain 7 143 7.3E-15 T 23-04-2016 IPR012312 Haemerythrin-like RPE_RS06565 80ad1eacd6e83a64219300e6336e1c05 165 PANTHER PTHR34310:SF2 5 165 1.8E-93 T 23-04-2016 RPE_RS06565 80ad1eacd6e83a64219300e6336e1c05 165 Pfam PF04248 Domain of unknown function (DUF427) 33 123 5.6E-35 T 23-04-2016 IPR007361 Domain of unknown function DUF427 RPE_RS06565 80ad1eacd6e83a64219300e6336e1c05 165 PANTHER PTHR34310 5 165 1.8E-93 T 23-04-2016 RPE_RS20545 204241813a83dba287ff318009cbaa15 145 SUPERFAMILY SSF143100 10 64 3.66E-11 T 23-04-2016 RPE_RS20700 c1dbdf83abb9c94a731bc9f197cffb0b 103 Pfam PF15723 Motility quorum-sensing regulator, toxin of MqsA 7 102 2.2E-27 T 23-04-2016 IPR031451 mRNA interferase MqsR GO:0009372|GO:0017148|GO:0042710 RPE_RS20945 d38e6f9f47ecf2084427c75f63e735a7 134 Pfam PF06823 Protein of unknown function (DUF1236) 80 131 2.9E-10 T 23-04-2016 IPR009642 Protein of unknown function DUF1236 RPE_RS22665 3a5bd90c48496c7198fea2522b980664 179 SUPERFAMILY SSF48452 20 80 2.37E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS22665 3a5bd90c48496c7198fea2522b980664 179 SUPERFAMILY SSF48452 132 175 2.37E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS22665 3a5bd90c48496c7198fea2522b980664 179 Gene3D G3DSA:1.25.40.10 44 176 2.8E-8 T 23-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RPE_RS09520 88d08ee33139e3a98a794eba925289db 423 Pfam PF03237 Terminase-like family 38 407 4.4E-49 T 23-04-2016 IPR004921 Terminase, large subunit RPE_RS11870 9f0c209c125062e0e79e8cfa52f91538 66 Gene3D G3DSA:1.10.10.10 1 66 7.5E-37 T 23-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RPE_RS16940 8f3b48fb0a6046dd2b825f77f462462b 149 Pfam PF06170 Protein of unknown function (DUF983) 47 131 6.0E-37 T 23-04-2016 IPR009325 Protein of unknown function DUF983 RPE_RS03585 352340d2920963dc0089304fde14a7de 263 TIGRFAM TIGR02186 alph_Pro_TM: conserved hypothetical protein 13 263 1.1E-97 T 23-04-2016 IPR019088 Conserved hypothetical protein CHP02186-related, transmembrane RPE_RS03585 352340d2920963dc0089304fde14a7de 263 Pfam PF09608 Putative transmembrane protein (Alph_Pro_TM) 30 262 1.9E-77 T 23-04-2016 IPR019088 Conserved hypothetical protein CHP02186-related, transmembrane RPE_RS12955 5b98a67ddf46cb94418fa3ec302af270 92 SUPERFAMILY SSF141371 6 87 3.53E-8 T 23-04-2016 RPE_RS12955 5b98a67ddf46cb94418fa3ec302af270 92 Pfam PF07238 PilZ domain 6 87 7.0E-6 T 23-04-2016 IPR009875 PilZ domain GO:0035438 RPE_RS05410 d1d05ce15e04e090c551ad30c261179e 153 Gene3D G3DSA:1.20.120.10 91 126 7.6E-4 T 23-04-2016 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 RPE_RS05410 d1d05ce15e04e090c551ad30c261179e 153 SUPERFAMILY SSF47175 88 126 5.69E-6 T 23-04-2016 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 RPE_RS07495 cfe746dabee62f570f699e423a079d0c 366 PANTHER PTHR34697 8 339 7.4E-94 T 23-04-2016 RPE_RS11755 f82108ff7c8465551927211dc36898ef 139 Pfam PF12098 Protein of unknown function (DUF3574) 39 139 1.9E-35 T 23-04-2016 IPR021957 Protein of unknown function DUF3574 RPE_RS13025 ebbf04773f55c1476a8eab2b50a28d3d 105 Pfam PF05488 PAAR motif 16 54 2.1E-6 T 23-04-2016 IPR008727 PAAR motif RPE_RS13025 ebbf04773f55c1476a8eab2b50a28d3d 105 Pfam PF05488 PAAR motif 53 102 3.1E-13 T 23-04-2016 IPR008727 PAAR motif RPE_RS21835 ef4cba2665d4eaa820562f1c3a0964c5 205 Pfam PF10649 Protein of unknown function (DUF2478) 13 171 2.3E-56 T 23-04-2016 IPR018912 Protein of unknown function DUF2478 RPE_RS12175 3a1fcefa1d2ab1f35b246c878d604d75 344 Pfam PF13271 Domain of unknown function (DUF4062) 7 88 5.0E-27 T 23-04-2016 IPR025139 Domain of unknown function DUF4062 RPE_RS20535 5571bab121881e627d829f8da2d5e808 196 Pfam PF06282 Protein of unknown function (DUF1036) 36 148 8.9E-42 T 23-04-2016 IPR009380 Protein of unknown function DUF1036 RPE_RS20015 43e5cf6df2267e291dec1e4593d1592a 414 Gene3D G3DSA:3.90.1200.10 196 304 1.5E-8 T 23-04-2016 RPE_RS20015 43e5cf6df2267e291dec1e4593d1592a 414 Pfam PF01636 Phosphotransferase enzyme family 134 299 7.1E-9 T 23-04-2016 IPR002575 Aminoglycoside phosphotransferase RPE_RS20015 43e5cf6df2267e291dec1e4593d1592a 414 SUPERFAMILY SSF56112 37 297 8.16E-12 T 23-04-2016 IPR011009 Protein kinase-like domain RPE_RS00300 cd06ee1b32fdf82f552a2dc848e2287e 60 Pfam PF07007 Protein of unknown function (DUF1311) 4 54 1.2E-8 T 23-04-2016 IPR009739 Protein of unknown function DUF1311 RPE_RS11360 36669c22201306098406ccce3db6c142 384 Pfam PF10908 Protein of unknown function (DUF2778) 278 381 2.6E-22 T 23-04-2016 IPR021225 Protein of unknown function DUF2778 RPE_RS09530 c9620eca26a35a69606ab9ae04c9729f 391 TIGRFAM TIGR01537 portal_HK97: phage portal protein, HK97 family 43 386 1.3E-72 T 23-04-2016 IPR006427 Phage portal protein, HK97 RPE_RS09530 c9620eca26a35a69606ab9ae04c9729f 391 Pfam PF04860 Phage portal protein 51 379 1.0E-91 T 23-04-2016 IPR006944 Bacteriophage/Gene transfer agent portal protein RPE_RS16250 edb043d8033c49b11bfde8ad67053cae 159 Pfam PF12915 Protein of unknown function (DUF3833) 2 155 1.4E-30 T 23-04-2016 IPR024409 Protein of unknown function DUF3833 RPE_RS16330 c646de6d642f48fc218a859d4652fbb7 72 Pfam PF06412 Conjugal transfer protein TraD 5 70 8.7E-24 T 23-04-2016 IPR009444 Conjugal transfer, TraD, alpha-type GO:0000746 RPE_RS08935 6ac0d4d104f4561e7aed43c6e078e3b7 101 Pfam PF04365 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 8 88 3.9E-21 T 23-04-2016 IPR007460 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system RPE_RS18745 f53ac011a7c38dd34cab1b515e8b75fa 183 Pfam PF07811 TadE-like protein 23 65 6.0E-11 T 23-04-2016 IPR012495 TadE-like RPE_RS09390 2d05cca8f8cd7977fbb1fc1b802dcef1 549 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 101 251 9.6E-11 T 23-04-2016 RPE_RS07115 01dc1b0ffc31708c75dd6798e6fe1338 140 TIGRFAM TIGR02293 TAS_TIGR02293: putative toxin-antitoxin system antitoxin component, TIGR02293 family 69 140 5.1E-17 T 23-04-2016 IPR011979 Conserved hypothetical protein CHP02293 RPE_RS07115 01dc1b0ffc31708c75dd6798e6fe1338 140 Pfam PF09722 Protein of unknown function (DUF2384) 88 137 9.4E-18 T 23-04-2016 IPR024467 Domain of unknown function DUF2384 RPE_RS22020 9530e638b7d0011e8d99d65f3febb063 114 Pfam PF06823 Protein of unknown function (DUF1236) 50 114 2.4E-22 T 23-04-2016 IPR009642 Protein of unknown function DUF1236 RPE_RS15990 8f6dfe101fbe168a70b56a0ccdc6c0eb 405 PANTHER PTHR22976 135 353 2.6E-12 T 23-04-2016 RPE_RS15990 8f6dfe101fbe168a70b56a0ccdc6c0eb 405 Gene3D G3DSA:3.20.20.70 138 352 9.5E-18 T 23-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RPE_RS15990 8f6dfe101fbe168a70b56a0ccdc6c0eb 405 Pfam PF04055 Radical SAM superfamily 143 302 2.2E-8 T 23-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RPE_RS15990 8f6dfe101fbe168a70b56a0ccdc6c0eb 405 SUPERFAMILY SSF102114 135 379 2.49E-20 T 23-04-2016 RPE_RS17115 8e479d6f64009d6fbd5b2c496db56871 343 PRINTS PR01217 Proline rich extensin signature 238 259 2.7E-10 T 23-04-2016 RPE_RS17115 8e479d6f64009d6fbd5b2c496db56871 343 PRINTS PR01217 Proline rich extensin signature 306 331 2.7E-10 T 23-04-2016 RPE_RS17115 8e479d6f64009d6fbd5b2c496db56871 343 PRINTS PR01217 Proline rich extensin signature 221 233 2.7E-10 T 23-04-2016 RPE_RS17115 8e479d6f64009d6fbd5b2c496db56871 343 PRINTS PR01217 Proline rich extensin signature 281 298 2.7E-10 T 23-04-2016 RPE_RS17115 8e479d6f64009d6fbd5b2c496db56871 343 PRINTS PR01217 Proline rich extensin signature 263 279 2.7E-10 T 23-04-2016 RPE_RS17025 9dcd3d386359636fe5e05502bb98f68e 245 Pfam PF03591 AzlC protein 32 170 2.5E-17 T 23-04-2016 IPR011606 Branched-chain amino acid transport, permease RPE_RS04865 c7fd373d57e89bf5f1d4d506585ab5fe 214 Pfam PF02108 Flagellar assembly protein FliH 67 181 1.1E-11 T 23-04-2016 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE RPE_RS14375 28d4efe0ae3971398aca0cec9c56d498 377 Pfam PF01594 Domain of unknown function DUF20 35 366 3.9E-42 T 23-04-2016 IPR002549 Transmembrane protein TqsA-like RPE_RS14375 28d4efe0ae3971398aca0cec9c56d498 377 PANTHER PTHR21716:SF7 20 367 1.3E-89 T 23-04-2016 RPE_RS14375 28d4efe0ae3971398aca0cec9c56d498 377 PANTHER PTHR21716 20 367 1.3E-89 T 23-04-2016 IPR002549 Transmembrane protein TqsA-like RPE_RS11635 319b608f33e18b8bd788ccdb2a072031 72 Gene3D G3DSA:1.10.150.20 15 59 6.5E-4 T 23-04-2016 RPE_RS19985 cf4525e4c3ab3bafd260c2424c7d2c16 517 Pfam PF01618 MotA/TolQ/ExbB proton channel family 218 300 1.3E-5 T 23-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 RPE_RS14825 c83abbeb17eeba8ea4b59765cdf3728f 624 Pfam PF13687 Domain of unknown function (DUF4153) 181 422 3.7E-18 T 23-04-2016 IPR025291 Protein of unknown function DUF4153 RPE_RS12095 99c529f0800e3b5fe38c76ecdfc1f23b 80 Pfam PF09939 Uncharacterized protein conserved in bacteria (DUF2171) 7 73 3.9E-27 T 23-04-2016 IPR018684 Protein of unknown function DUF2171 RPE_RS12750 1a489e0f03d947f869fbc6cea14e9362 123 Pfam PF11162 Protein of unknown function (DUF2946) 10 120 1.3E-6 T 23-04-2016 IPR021333 Protein of unknown function DUF2946 RPE_RS18630 561882fba67bdaf07a69a3aa956c2cfd 103 Pfam PF09650 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) 7 93 2.2E-15 T 23-04-2016 IPR013433 Putative polyhydroxyalkanoic acid system protein RPE_RS14300 cce237a78cf27836d46dacd581bfff94 399 SUPERFAMILY SSF55729 187 360 1.59E-16 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS14300 cce237a78cf27836d46dacd581bfff94 399 Pfam PF13480 Acetyltransferase (GNAT) domain 194 343 2.2E-31 T 23-04-2016 RPE_RS24710 42b9197f9d59f1184f7c2aca4b5fafbe 289 SUPERFAMILY SSF52540 7 150 3.39E-18 T 23-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RPE_RS21795 2cb9b58f5c8cfb9e63649ccaf92df7f6 63 Pfam PF11127 Protein of unknown function (DUF2892) 1 61 3.3E-23 T 23-04-2016 IPR021309 Protein of unknown function DUF2892 RPE_RS11545 2a5e3de809028fbc5e8ebb1e67310909 205 Gene3D G3DSA:3.40.10.10 70 101 1.8E-4 T 23-04-2016 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 RPE_RS05930 177249005f68ac0f47aaf3669e707296 325 Pfam PF02120 Flagellar hook-length control protein FliK 172 250 6.0E-19 T 23-04-2016 IPR021136 Flagellar hook-length control protein-like, C-terminal RPE_RS18740 7bf692d719dc69761bd54752686cc92c 204 Pfam PF07811 TadE-like protein 17 41 4.1E-7 T 23-04-2016 IPR012495 TadE-like RPE_RS23765 ee43624dc465254dfd6d6ccf2492f06e 130 Pfam PF06170 Protein of unknown function (DUF983) 31 115 5.4E-33 T 23-04-2016 IPR009325 Protein of unknown function DUF983 RPE_RS12155 ea241fdf127aa14ce919a1784b438094 84 SUPERFAMILY SSF143011 5 76 7.46E-7 T 23-04-2016 RPE_RS09275 ea5e8e96f6a709249418acecdc7b32a8 137 TIGRFAM TIGR03809 TIGR03809: TIGR03809 family protein 1 135 4.9E-46 T 23-04-2016 IPR022268 Conserved hypothetical protein CHP03809 RPE_RS10020 a14eacf3a7cbd7dd1d8c1640c6efc4ea 380 Pfam PF11064 Protein of unknown function (DUF2865) 207 320 3.9E-44 T 23-04-2016 IPR021293 Protein of unknown function DUF2865 RPE_RS11050 f0a8f7852181a42165d9dec780d82964 71 Pfam PF10049 Protein of unknown function (DUF2283) 2 50 6.8E-12 T 23-04-2016 IPR019270 Protein of unknown function DUF2283 RPE_RS09770 0b7dd72c78af6fe3e224ad90e0467c32 211 Pfam PF06532 Protein of unknown function (DUF1109) 10 211 7.6E-55 T 23-04-2016 IPR009495 Protein of unknown function DUF1109 RPE_RS20615 81725b29edb143d1ab4c4434e23344f9 461 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 370 454 6.8E-13 T 23-04-2016 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain RPE_RS20615 81725b29edb143d1ab4c4434e23344f9 461 Pfam PF01943 Polysaccharide biosynthesis protein 43 308 1.5E-14 T 23-04-2016 IPR002797 Polysaccharide biosynthesis protein GO:0016020 RPE_RS03330 ac8305fd151105113f511619a5d99f46 171 Pfam PF07323 Protein of unknown function (DUF1465) 16 169 1.4E-61 T 23-04-2016 IPR010848 Protein of unknown function DUF1465 RPE_RS22945 c8e0cadc66cd9d668f2db8b0729a91f2 136 Pfam PF16998 17 kDa outer membrane surface antigen 22 133 1.8E-35 T 23-04-2016 IPR032635 Surface antigen domain RPE_RS11505 d4236873f6f1b146838372fb37eaf030 184 SUPERFAMILY SSF55729 21 156 1.99E-21 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS11505 d4236873f6f1b146838372fb37eaf030 184 Gene3D G3DSA:3.40.630.30 20 157 8.0E-20 T 23-04-2016 IPR016181 Acyl-CoA N-acyltransferase RPE_RS11505 d4236873f6f1b146838372fb37eaf030 184 Pfam PF00583 Acetyltransferase (GNAT) family 92 153 2.9E-9 T 23-04-2016 IPR000182 GNAT domain GO:0008080 RPE_RS17350 1bd72d40bc24fa4471dc79e4a8494d90 621 Pfam PF16930 Putative porin 60 621 2.9E-221 T 23-04-2016 IPR032638 Putative bacterial porin RPE_RS17350 1bd72d40bc24fa4471dc79e4a8494d90 621 Gene3D G3DSA:2.40.160.20 320 398 9.4E-5 T 23-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RPE_RS17020 ca90183b4526ac0f5aa1af4e795dd5d6 114 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 12 108 2.3E-12 T 23-04-2016 IPR008407 Branched-chain amino acid transport, AzlD RPE_RS19330 a02d7993912dd7ed42485dc4e02a468a 160 Pfam PF09990 Predicted membrane protein (DUF2231) 55 153 4.7E-22 T 23-04-2016 IPR019251 Domain of unknown function DUF2231, transmembrane RPE_RS12555 717c4f52b7a047fae5af4589e0a27bd4 203 SUPERFAMILY SSF58113 62 196 4.32E-5 T 23-04-2016 RPE_RS17030 a63c56a6f73f5ff43858bab63ec3094f 119 SUPERFAMILY SSF141371 1 83 2.94E-7 T 23-04-2016 RPE_RS17030 a63c56a6f73f5ff43858bab63ec3094f 119 Pfam PF07238 PilZ domain 3 79 9.7E-10 T 23-04-2016 IPR009875 PilZ domain GO:0035438 RPE_RS09415 7837d4e1d850c20b86d0b2a22dcbdfba 144 ProDom PD102069 BLL3070 ATU0920 MEMBRANE AGR_C_1676P PRECURSOR TRANSMEMBRANE R01001 MLL7648 SIGNAL 1 110 4.0E-51 T 23-04-2016 RPE_RS20105 3f6c12093dd412378771eb53ee5e2d30 109 Pfam PF04956 TrbC/VIRB2 family 5 99 1.7E-24 T 23-04-2016 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 RPE_RS16320 8a2251c111157a897e5a8122cdbfbca2 275 Pfam PF13338 Transcriptional regulator, AbiEi antitoxin 44 118 1.4E-7 T 23-04-2016 IPR025159 Transcriptional regulator, AbiEi antitoxin RPE_RS03335 0cc939654442784565a44eb761757199 65 Pfam PF06698 Protein of unknown function (DUF1192) 5 62 2.1E-23 T 23-04-2016 IPR009579 Protein of unknown function DUF1192 RPE_RS22270 db05820365af4e7b5e38053123490483 124 Pfam PF08905 Domain of unknown function (DUF1850) 19 104 3.5E-26 T 23-04-2016 IPR015001 Protein of unknown function DUF1850 RPE_RS19445 1713738dd79971976af88f4eb2b1eadc 279 Pfam PF07357 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) 20 273 5.6E-98 T 23-04-2016 IPR009953 Dinitrogenase reductase ADP-ribosyltransferase RPE_RS09790 47e8ef19e5dab33a98528e0d5a17c0e2 267 Pfam PF09836 Putative DNA-binding domain 17 107 9.0E-23 T 23-04-2016 IPR018640 Putative DNA-binding domain, bacteria RPE_RS19160 83b4086f35c538950d2a428b3d2f6972 67 Pfam PF06568 Domain of unknown function (DUF1127) 25 56 2.7E-13 T 23-04-2016 IPR009506 Protein of unknown function DUF1127 RPE_RS12785 1b7decdab775884088579c30950356dd 89 Pfam PF12071 Protein of unknown function (DUF3551) 1 75 3.8E-27 T 23-04-2016 IPR021937 Protein of unknown function DUF3551 RPE_RS15310 fd32282b4d9ae9dc36be7fa6031ed2ab 624 Pfam PF14362 Domain of unknown function (DUF4407) 19 421 1.7E-21 T 23-04-2016 IPR025519 Protein of unknown function DUF4407 RPE_RS06410 a0e726290b7de93cf90af51acba20c4a 128 Pfam PF07886 BA14K-like protein 101 128 1.2E-12 T 23-04-2016 IPR012413 BA14k family GO:0009405 RPE_RS15045 321b9042e1376055fe1fc44d806ae18a 308 Pfam PF09923 Uncharacterized protein conserved in bacteria (DUF2155) 169 260 3.8E-35 T 23-04-2016 IPR019225 Protein of unknown function DUF2155 RPE_RS06505 ab3ccfe512b73b3048ddfa303bcf9d2d 406 Pfam PF05940 NnrS protein 15 389 6.7E-107 T 23-04-2016 IPR010266 NnrS RPE_RS22660 6c098079c1d236ce35248dadedba921a 100 Pfam PF04319 NifZ domain 17 86 7.8E-31 T 23-04-2016 IPR007415 Nitrogenase MoFe maturation protein, NifZ GO:0009399 RPE_RS01200 3c56a38deea8c39ede8b4b5da8e9869d 153 Pfam PF10027 Predicted integral membrane protein (DUF2269) 4 153 1.9E-32 T 23-04-2016 IPR018729 Protein of unknown function DUF2269, transmembrane RPE_RS11365 75f7b63ce3b37cc98e0e258918beec36 404 Pfam PF05150 Legionella pneumophila major outer membrane protein precursor 203 370 5.9E-7 T 23-04-2016 IPR007825 Major outer membrane precursor, Legionella pneumophila RPE_RS13205 ab6dbdaa9e4faf53f9c6cef308a753d0 224 Pfam PF07886 BA14K-like protein 197 224 1.4E-14 T 23-04-2016 IPR012413 BA14k family GO:0009405 RPE_RS24505 2cfb551527abdc8b454721ce373cfd51 90 Gene3D G3DSA:3.10.180.10 31 77 8.5E-4 T 23-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RPE_RS24505 2cfb551527abdc8b454721ce373cfd51 90 Pfam PF13670 Peptidase propeptide and YPEB domain 5 88 1.7E-21 T 23-04-2016 IPR025711 PepSY domain RPE_RS24320 8273fe30e0c0bca70006e791b104b021 193 Pfam PF11845 Protein of unknown function (DUF3365) 10 190 6.9E-31 T 23-04-2016 IPR021796 Protein of unknown function DUF3365 RPE_RS16830 c5c8df0ae224f45a62624598de56bd75 93 Pfam PF04365 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 5 80 3.1E-14 T 23-04-2016 IPR007460 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system RPE_RS04760 36cb20635383288d1651e1fbfb2078f6 80 Pfam PF09926 Uncharacterized small protein (DUF2158) 6 44 1.1E-8 T 23-04-2016 IPR019226 Protein of unknown function DUF2158 RPE_RS06660 f47ba4d9ebaad3cc94e60e6832f98807 155 Pfam PF10027 Predicted integral membrane protein (DUF2269) 5 153 3.9E-22 T 23-04-2016 IPR018729 Protein of unknown function DUF2269, transmembrane RPE_RS07910 9e444c249ad98b4c1c8eafd385e68f06 239 Pfam PF16640 Bacterial Ig-like domain (group 3) 144 226 2.1E-16 T 23-04-2016 IPR032109 Bacterial Ig-like domain (group 3) RPE_RS07910 9e444c249ad98b4c1c8eafd385e68f06 239 Pfam PF16640 Bacterial Ig-like domain (group 3) 45 129 1.7E-13 T 23-04-2016 IPR032109 Bacterial Ig-like domain (group 3) RPE_RS20065 2bc4fa8fd4139ae974505fc2b9baccc4 367 Pfam PF03743 Bacterial conjugation TrbI-like protein 213 338 3.3E-41 T 23-04-2016 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI RPE_RS08170 cf4f944f973c77e1c5b7a24222bc8dd7 276 Pfam PF14067 LssY C-terminus 68 266 9.9E-64 T 23-04-2016 IPR025902 LssY-like C-terminal domain RPE_RS13805 9bf016f7da3742c9f141dae18cacc63e 255 Pfam PF10691 Protein of unknown function (DUF2497) 187 253 2.0E-26 T 23-04-2016 IPR019632 Protein of unknown function DUF2497 RPE_RS05310 bc3841a51e92bab25b95bef3b1996b38 64 Pfam PF13358 DDE superfamily endonuclease 1 28 9.1E-9 T 23-04-2016 RPE_RS20310 0c757a0914e32864ad8634be3e5d16d0 83 Pfam PF07704 Rv0623-like transcription factor 1 82 1.1E-28 T 23-04-2016 IPR011660 Rv0623-like transcription factor RPE_RS19540 7980d133e41cc923c506cfb3ae0dcd22 455 SUPERFAMILY SSF56801 147 365 4.73E-6 T 23-04-2016 RPE_RS09900 b2346b141fe6899ea378a1a67acb9e79 259 Pfam PF10670 Domain of unknown function (DUF4198) 24 229 3.0E-52 T 23-04-2016 IPR019613 Protein of unknown function DUF4198 RPE_RS08415 3a839b9da50f2e863065b071d45cb824 245 Pfam PF17036 Cellulose biosynthesis protein BcsS 99 239 8.6E-42 T 23-04-2016 IPR031485 Cellulose biosynthesis protein BcsS RPE_RS01545 58dc609088018bc30e27910cf75450d3 124 Pfam PF10984 Protein of unknown function (DUF2794) 30 114 6.4E-40 T 23-04-2016 IPR021252 Protein of unknown function DUF2794 RPE_RS15120 fc1f1f91ed89403870e2ff5914cf1c07 180 Pfam PF06271 RDD family 35 160 2.9E-15 T 23-04-2016 IPR010432 RDD RPE_RS19590 180ba21a65dd6deca45f332dc12b21f5 171 Pfam PF02674 Colicin V production protein 4 146 1.6E-14 T 23-04-2016 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 RPE_RS07850 1bc3eb436d4e215dd87f0ce3714ce8b1 233 Gene3D G3DSA:3.10.100.10 36 232 8.1E-39 T 23-04-2016 IPR016186 C-type lectin-like RPE_RS07850 1bc3eb436d4e215dd87f0ce3714ce8b1 233 SUPERFAMILY SSF56436 36 212 1.07E-37 T 23-04-2016 IPR016187 C-type lectin fold RPE_RS09625 dc1d08fc9f6afb2eca722aaed8eafd20 136 Pfam PF11367 Protein of unknown function (DUF3168) 11 128 1.1E-33 T 23-04-2016 IPR021508 Protein of unknown function DUF3168 RPE_RS22855 b196a8ce03c94995871a5cd2b1adeed4 269 Pfam PF10670 Domain of unknown function (DUF4198) 21 245 1.9E-65 T 23-04-2016 IPR019613 Protein of unknown function DUF4198 RPE_RS11095 4e03902e2c474c3ca63886a6481041ef 194 Pfam PF07813 LTXXQ motif family protein 46 144 1.2E-9 T 23-04-2016 IPR012899 LTXXQ motif family protein GO:0042597 RPE_RS15065 88729422bc7cc74ed63dedc0dded12a2 202 Pfam PF06736 Protein of unknown function (DUF1211) 8 99 4.8E-18 T 23-04-2016 IPR010617 Endosomal/lysomomal potassium channel TMEM175 GO:0005267 RPE_RS22905 0a03d414089475820ccdd8e6ce4dd753 326 Pfam PF12275 Protein of unknown function (DUF3616) 140 285 2.0E-7 T 23-04-2016 IPR022060 Protein of unknown function DUF3616 RPE_RS22905 0a03d414089475820ccdd8e6ce4dd753 326 Pfam PF12275 Protein of unknown function (DUF3616) 36 111 6.9E-5 T 23-04-2016 IPR022060 Protein of unknown function DUF3616