locus-tag class description RAF_RS00005 IPR026565 Putative pyruvate, phosphate dikinase regulatory protein RAF_RS00005 IPR005177 Bifunctional kinase-pyrophosphorylase RAF_RS00010 IPR005746 Thioredoxin RAF_RS00010 IPR036249 Thioredoxin-like superfamily RAF_RS00010 IPR017937 Thioredoxin, conserved site RAF_RS00010 IPR013766 Thioredoxin domain RAF_RS00015 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00015 IPR003593 AAA+ ATPase domain RAF_RS00015 IPR029439 Wzt, C-terminal RAF_RS00015 IPR003439 ABC transporter-like RAF_RS00020 IPR013525 ABC-2 type transporter RAF_RS00020 IPR000412 ABC-2 transporter RAF_RS00025 IPR017938 Riboflavin synthase-like beta-barrel RAF_RS00025 IPR023753 FAD/NAD(P)-binding domain RAF_RS00025 IPR036188 FAD/NAD(P)-binding domain superfamily RAF_RS00040 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase RAF_RS00040 IPR011004 Trimeric LpxA-like superfamily RAF_RS00040 IPR018357 Hexapeptide transferase, conserved site RAF_RS00040 IPR001451 Hexapeptide repeat RAF_RS00040 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily RAF_RS00040 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal RAF_RS00045 IPR029069 HotDog domain superfamily RAF_RS00045 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ RAF_RS00045 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ RAF_RS00050 IPR001451 Hexapeptide repeat RAF_RS00050 IPR018357 Hexapeptide transferase, conserved site RAF_RS00050 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD RAF_RS00050 IPR011004 Trimeric LpxA-like superfamily RAF_RS00050 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region RAF_RS00060 IPR001269 tRNA-dihydrouridine synthase RAF_RS00060 IPR013785 Aldolase-type TIM barrel RAF_RS00060 IPR035587 DUS-like, FMN-binding domain RAF_RS00060 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal RAF_RS00060 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 RAF_RS00060 IPR018517 tRNA-dihydrouridine synthase, conserved site RAF_RS00065 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel RAF_RS00075 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE RAF_RS00075 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00080 IPR006127 Periplasmic solute binding protein, ZnuA-like RAF_RS00085 IPR025866 Polymerase A arginine-rich C-terminal domain RAF_RS00085 IPR002646 Poly A polymerase, head domain RAF_RS00085 IPR010206 Poly(A) polymerase I RAF_RS00085 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain RAF_RS00110 IPR036709 Autotransporter beta-domain superfamily RAF_RS00110 IPR005546 Autotransporter beta-domain RAF_RS00130 IPR011990 Tetratricopeptide-like helical domain superfamily RAF_RS00140 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast RAF_RS00145 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast RAF_RS00150 IPR038662 F1F0 ATP synthase subunit C superfamily RAF_RS00150 IPR002379 V-ATPase proteolipid subunit C-like domain RAF_RS00150 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site RAF_RS00150 IPR000454 ATP synthase, F0 complex, subunit C RAF_RS00150 IPR035921 F/V-ATP synthase subunit C superfamily RAF_RS00155 IPR000568 ATP synthase, F0 complex, subunit A RAF_RS00155 IPR023011 ATP synthase, F0 complex, subunit A, active site RAF_RS00155 IPR035908 ATP synthase, F0 complex, subunit A superfamily RAF_RS00160 IPR032820 Putative F0F1-ATPase subunit, Ca2+/Mg2+ transporter RAF_RS00165 IPR013766 Thioredoxin domain RAF_RS00165 IPR017937 Thioredoxin, conserved site RAF_RS00165 IPR012336 Thioredoxin-like fold RAF_RS00165 IPR036249 Thioredoxin-like superfamily RAF_RS00175 IPR018773 Methyltransferase regulatory domain, predicted RAF_RS00175 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS00175 IPR025714 Methyltransferase domain RAF_RS00180 IPR001238 DNA-binding, RecF RAF_RS00180 IPR018078 DNA-binding, RecF, conserved site RAF_RS00180 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00180 IPR003395 RecF/RecN/SMC, N-terminal RAF_RS00180 IPR042174 DNA-binding RecF, domain 2 RAF_RS00185 IPR024072 Dihydrofolate reductase-like domain superfamily RAF_RS00185 IPR012259 Dihydrofolate reductase RAF_RS00185 IPR017925 Dihydrofolate reductase conserved site RAF_RS00185 IPR001796 Dihydrofolate reductase domain RAF_RS00190 IPR000489 Pterin-binding domain RAF_RS00190 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily RAF_RS00190 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK RAF_RS00190 IPR006390 Dihydropteroate synthase RAF_RS00190 IPR011005 Dihydropteroate synthase-like RAF_RS00195 IPR011005 Dihydropteroate synthase-like RAF_RS00195 IPR000489 Pterin-binding domain RAF_RS00195 IPR006390 Dihydropteroate synthase RAF_RS00200 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily RAF_RS00200 IPR000489 Pterin-binding domain RAF_RS00200 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK RAF_RS00200 IPR011005 Dihydropteroate synthase-like RAF_RS00200 IPR006390 Dihydropteroate synthase RAF_RS00210 IPR020171 Uncharacterised protein family RC0039 RAF_RS00220 IPR011990 Tetratricopeptide-like helical domain superfamily RAF_RS00235 IPR003774 Protein of unknown function UPF0301 RAF_RS00255 IPR020183 Uncharacterised protein family RC0048 RAF_RS00285 IPR002347 Short-chain dehydrogenase/reductase SDR RAF_RS00285 IPR020904 Short-chain dehydrogenase/reductase, conserved site RAF_RS00285 IPR036291 NAD(P)-binding domain superfamily RAF_RS00285 IPR011283 Acetoacetyl-CoA reductase RAF_RS00305 IPR003593 AAA+ ATPase domain RAF_RS00305 IPR041546 ClpA/ClpB, AAA lid domain RAF_RS00305 IPR019489 Clp ATPase, C-terminal RAF_RS00305 IPR036628 Clp, N-terminal domain superfamily RAF_RS00305 IPR004176 Clp, N-terminal RAF_RS00305 IPR001270 ClpA/B family RAF_RS00305 IPR018368 ClpA/B, conserved site 1 RAF_RS00305 IPR028299 ClpA/B, conserved site 2 RAF_RS00305 IPR017730 Chaperonin ClpB RAF_RS00305 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00305 IPR003959 ATPase, AAA-type, core RAF_RS00310 IPR035354 Protein of unknown function DUF5424 RAF_RS00315 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD RAF_RS00315 IPR017860 Peptidase M22, conserved site RAF_RS00315 IPR017861 Kae1/TsaD family RAF_RS00315 IPR000905 Gcp-like domain RAF_RS00335 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 RAF_RS00335 IPR035980 Ribosomal protein S6 superfamily RAF_RS00335 IPR020814 Ribosomal protein S6, plastid/chloroplast RAF_RS00335 IPR000529 Ribosomal protein S6 RAF_RS00340 IPR001648 Ribosomal protein S18 RAF_RS00340 IPR018275 Ribosomal protein S18, conserved site RAF_RS00340 IPR036870 Ribosomal protein S18 superfamily RAF_RS00345 IPR009027 Ribosomal protein L9/RNase H1, N-terminal RAF_RS00345 IPR036935 Ribosomal protein L9, N-terminal domain superfamily RAF_RS00345 IPR020070 Ribosomal protein L9, N-terminal RAF_RS00345 IPR036791 Ribosomal protein L9, C-terminal domain superfamily RAF_RS00345 IPR020069 Ribosomal protein L9, C-terminal RAF_RS00345 IPR020594 Ribosomal protein L9, bacteria/chloroplast RAF_RS00345 IPR000244 Ribosomal protein L9 RAF_RS00350 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal RAF_RS00350 IPR012094 tRNA(Ile)-lysidine synthase RAF_RS00350 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal RAF_RS00350 IPR005728 Rickettsial palindromic element RAF_RS00350 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS00355 IPR003959 ATPase, AAA-type, core RAF_RS00355 IPR041569 AAA ATPase, AAA+ lid domain RAF_RS00355 IPR005936 Peptidase, FtsH RAF_RS00355 IPR011546 Peptidase M41, FtsH extracellular RAF_RS00355 IPR037219 Peptidase M41-like RAF_RS00355 IPR003960 ATPase, AAA-type, conserved site RAF_RS00355 IPR003593 AAA+ ATPase domain RAF_RS00355 IPR000642 Peptidase M41 RAF_RS00355 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00360 IPR018117 DNA methylase, C-5 cytosine-specific, active site RAF_RS00360 IPR001525 C-5 cytosine methyltransferase RAF_RS00360 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site RAF_RS00360 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS00365 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain RAF_RS00365 IPR009051 Alpha-helical ferredoxin RAF_RS00365 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site RAF_RS00365 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RAF_RS00365 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RAF_RS00365 IPR012675 Beta-grasp domain superfamily RAF_RS00365 IPR036010 2Fe-2S ferredoxin-like superfamily RAF_RS00365 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein RAF_RS00365 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal RAF_RS00375 IPR032819 tRNA pseudouridylate synthase B, C-terminal RAF_RS00375 IPR005728 Rickettsial palindromic element RAF_RS00375 IPR002501 Pseudouridine synthase II, N-terminal RAF_RS00375 IPR014780 tRNA pseudouridine synthase II, TruB RAF_RS00375 IPR020103 Pseudouridine synthase, catalytic domain superfamily RAF_RS00380 IPR001640 Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase Lgt RAF_RS00385 IPR011066 Mechanosensitive ion channel MscS, C-terminal RAF_RS00385 IPR006685 Mechanosensitive ion channel MscS RAF_RS00385 IPR010920 LSM domain superfamily RAF_RS00385 IPR030192 Miniconductance mechanosensitive channel YbdG RAF_RS00390 IPR028055 Membrane insertase YidC/Oxa1, C-terminal RAF_RS00390 IPR019998 Membrane insertase YidC RAF_RS00390 IPR028053 Membrane insertase YidC, N-terminal RAF_RS00390 IPR038221 YidC, periplasmic domain superfamily RAF_RS00390 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 RAF_RS00390 IPR038210 Membrane insertase YidC, periplasmic domain RAF_RS00395 IPR000462 CDP-alcohol phosphatidyltransferase RAF_RS00395 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase RAF_RS00420 IPR018711 Phosphodiester glycosidase RAF_RS00425 IPR023635 Peptide deformylase RAF_RS00425 IPR036821 Peptide deformylase superfamily RAF_RS00430 IPR036259 MFS transporter superfamily RAF_RS00430 IPR004667 ADP/ATP carrier protein RAF_RS00435 IPR036259 MFS transporter superfamily RAF_RS00435 IPR011701 Major facilitator superfamily RAF_RS00435 IPR020846 Major facilitator superfamily domain RAF_RS00435 IPR000849 Sugar phosphate transporter RAF_RS00435 IPR021159 Glycerate/sugar phosphate transporter, conserved site RAF_RS00440 IPR023005 Nucleoside diphosphate kinase, active site RAF_RS00440 IPR034907 Nucleoside diphosphate kinase-like domain RAF_RS00440 IPR036850 Nucleoside diphosphate kinase-like domain superfamily RAF_RS00440 IPR001564 Nucleoside diphosphate kinase RAF_RS00445 IPR036188 FAD/NAD(P)-binding domain superfamily RAF_RS00445 IPR020595 MnmG-related, conserved site RAF_RS00445 IPR026904 GidA associated domain 3 RAF_RS00445 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG RAF_RS00445 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related RAF_RS00450 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS00450 IPR003682 rRNA small subunit methyltransferase G RAF_RS00455 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00455 IPR025669 AAA domain RAF_RS00460 IPR004437 ParB/RepB/Spo0J partition protein RAF_RS00460 IPR041468 ParB/Spo0J, HTH domain RAF_RS00460 IPR003115 ParB/Sulfiredoxin RAF_RS00460 IPR036086 ParB/Sulfiredoxin superfamily RAF_RS00465 IPR017871 ABC transporter, conserved site RAF_RS00465 IPR003439 ABC transporter-like RAF_RS00465 IPR022374 Energy-dependent translational throttle protein EttA RAF_RS00465 IPR032781 ABC-transporter extension domain RAF_RS00465 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00465 IPR003593 AAA+ ATPase domain RAF_RS00470 IPR022718 Protein of unknown function DUF2672 RAF_RS00475 IPR006269 3-deoxy-8-phosphooctulonate synthase RAF_RS00475 IPR006218 DAHP synthetase I/KDSA RAF_RS00475 IPR013785 Aldolase-type TIM barrel RAF_RS00485 IPR016092 FeS cluster insertion protein RAF_RS00485 IPR017870 FeS cluster insertion, C-terminal, conserved site RAF_RS00485 IPR035903 HesB-like domain superfamily RAF_RS00485 IPR000361 FeS cluster biogenesis RAF_RS00490 IPR006674 HD domain RAF_RS00490 IPR023023 dNTP triphosphohydrolase, type 2 RAF_RS00490 IPR003607 HD/PDEase domain RAF_RS00490 IPR026875 Phosphohydrolase-associated domain RAF_RS00490 IPR006261 dNTP triphosphohydrolase RAF_RS00495 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS00495 IPR008909 DALR anticodon binding RAF_RS00495 IPR035684 Arginyl-tRNA synthetase, catalytic core domain RAF_RS00495 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily RAF_RS00495 IPR005148 Arginyl tRNA synthetase N-terminal domain RAF_RS00495 IPR001278 Arginine-tRNA ligase RAF_RS00495 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site RAF_RS00495 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding RAF_RS00500 IPR036680 Sporulation-like domain superfamily RAF_RS00500 IPR007730 Sporulation-like domain RAF_RS00505 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative RAF_RS00505 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal RAF_RS00505 IPR013760 DNA topoisomerase, type IIA-like domain superfamily RAF_RS00505 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal RAF_RS00505 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta RAF_RS00505 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily RAF_RS00505 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat RAF_RS00515 IPR033900 Porin domain, Gram-negative type RAF_RS00520 IPR011962 dCTP deaminase RAF_RS00520 IPR029054 dUTPase-like RAF_RS00520 IPR036157 dUTPase-like superfamily RAF_RS00520 IPR033704 dUTPase, trimeric RAF_RS00525 IPR003708 Bacterial protein export chaperone SecB RAF_RS00525 IPR035958 SecB-like superfamily RAF_RS00530 IPR039420 Transcriptional regulatory protein WalR-like RAF_RS00530 IPR011006 CheY-like superfamily RAF_RS00530 IPR001867 OmpR/PhoB-type DNA-binding domain RAF_RS00530 IPR001789 Signal transduction response regulator, receiver domain RAF_RS00530 IPR036388 Winged helix-like DNA-binding domain superfamily RAF_RS00535 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 RAF_RS00535 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal RAF_RS00535 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF RAF_RS00545 IPR034300 NADP transhydrogenase beta-like domain RAF_RS00545 IPR012136 NADP transhydrogenase, beta subunit RAF_RS00545 IPR029035 DHS-like NAD/FAD-binding domain superfamily RAF_RS00550 IPR005618 Outer membrane protein, OmpW RAF_RS00550 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel RAF_RS00555 IPR000620 EamA domain RAF_RS00560 IPR036259 MFS transporter superfamily RAF_RS00560 IPR005829 Sugar transporter, conserved site RAF_RS00560 IPR011701 Major facilitator superfamily RAF_RS00560 IPR020846 Major facilitator superfamily domain RAF_RS00575 IPR004692 Preprotein translocase SecG subunit RAF_RS00580 IPR005546 Autotransporter beta-domain RAF_RS00580 IPR036709 Autotransporter beta-domain superfamily RAF_RS00585 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding RAF_RS00585 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS00585 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase RAF_RS00585 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR RAF_RS00585 IPR015803 Cysteine-tRNA ligase RAF_RS00585 IPR032678 tRNA synthetases class I, catalytic domain RAF_RS00590 IPR018130 Ribosomal protein S2, conserved site RAF_RS00590 IPR001865 Ribosomal protein S2 RAF_RS00590 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily RAF_RS00590 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid RAF_RS00595 IPR009060 UBA-like superfamily RAF_RS00595 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation RAF_RS00595 IPR001816 Translation elongation factor EFTs/EF1B RAF_RS00595 IPR036402 Elongation factor Ts, dimerisation domain superfamily RAF_RS00595 IPR018101 Translation elongation factor Ts, conserved site RAF_RS00615 IPR039901 3-deoxy-D-manno-octulosonic acid transferase RAF_RS00615 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal RAF_RS00615 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily RAF_RS00615 IPR005728 Rickettsial palindromic element RAF_RS00620 IPR007172 Domain of unknown function DUF374 RAF_RS00625 IPR004839 Aminotransferase, class I/classII RAF_RS00625 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RAF_RS00625 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RAF_RS00625 IPR015424 Pyridoxal phosphate-dependent transferase RAF_RS00625 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site RAF_RS00630 IPR011990 Tetratricopeptide-like helical domain superfamily RAF_RS00630 IPR013026 Tetratricopeptide repeat-containing domain RAF_RS00630 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS00635 IPR007428 MlaA lipoprotein RAF_RS00645 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain RAF_RS00645 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site RAF_RS00645 IPR005946 Ribose-phosphate pyrophosphokinase RAF_RS00645 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type RAF_RS00645 IPR000836 Phosphoribosyltransferase domain RAF_RS00645 IPR029057 Phosphoribosyltransferase-like RAF_RS00650 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site RAF_RS00650 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain RAF_RS00650 IPR000836 Phosphoribosyltransferase domain RAF_RS00650 IPR029057 Phosphoribosyltransferase-like RAF_RS00650 IPR005946 Ribose-phosphate pyrophosphokinase RAF_RS00650 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type RAF_RS00655 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site RAF_RS00655 IPR011079 Alanine racemase, C-terminal RAF_RS00655 IPR000821 Alanine racemase RAF_RS00655 IPR001608 Alanine racemase, N-terminal RAF_RS00655 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal RAF_RS00655 IPR029066 PLP-binding barrel RAF_RS00660 IPR003453 ABC transport permease subunit MlaE, Proteobacteria RAF_RS00660 IPR030802 ABC transporter permease MalE RAF_RS00665 IPR017871 ABC transporter, conserved site RAF_RS00665 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00665 IPR003593 AAA+ ATPase domain RAF_RS00665 IPR003439 ABC transporter-like RAF_RS00665 IPR030296 Probable ABC transporter ATP-binding protein MlaF/Mkl RAF_RS00670 IPR035116 Protein of unknown function DUF5510 RAF_RS00695 IPR011324 Cytotoxic necrotizing factor-like, catalytic RAF_RS00705 IPR037147 Ribosomal protein L28/L24 superfamily RAF_RS00705 IPR026569 Ribosomal protein L28/L24 RAF_RS00705 IPR034704 L28p-like RAF_RS00705 IPR001383 Ribosomal protein L28 RAF_RS00710 IPR034704 L28p-like RAF_RS00710 IPR042105 Ribosomal protein L31 superfamily RAF_RS00710 IPR002150 Ribosomal protein L31 RAF_RS00720 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC RAF_RS00720 IPR030393 EngB-type guanine nucleotide-binding (G) domain RAF_RS00720 IPR006073 GTP binding domain RAF_RS00720 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00725 IPR036393 Acetylglutamate kinase-like superfamily RAF_RS00725 IPR001057 Glutamate/acetylglutamate kinase RAF_RS00725 IPR004662 Acetylglutamate kinase family RAF_RS00725 IPR037528 Acetylglutamate kinase ArgB RAF_RS00725 IPR001048 Aspartate/glutamate/uridylate kinase RAF_RS00725 IPR041727 N-Acetyl-L-glutamate kinase, cyclic RAF_RS00735 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00735 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain RAF_RS00735 IPR004346 CagE, TrbE, VirB component of type IV transporter system RAF_RS00735 IPR003593 AAA+ ATPase domain RAF_RS00740 IPR007688 Plasmid conjugal transfer TrbL/VirB6 RAF_RS00750 IPR007688 Plasmid conjugal transfer TrbL/VirB6 RAF_RS00755 IPR007688 Plasmid conjugal transfer TrbL/VirB6 RAF_RS00760 IPR007688 Plasmid conjugal transfer TrbL/VirB6 RAF_RS00780 IPR029028 Alpha/beta knot methyltransferases RAF_RS00780 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria RAF_RS00780 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal RAF_RS00780 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RAF_RS00780 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain RAF_RS00785 IPR038657 Ribosomal protein L19 superfamily RAF_RS00785 IPR008991 Translation protein SH3-like domain superfamily RAF_RS00785 IPR001857 Ribosomal protein L19 RAF_RS00790 IPR018753 Azospirillum phage Cd, Gp10 RAF_RS00795 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site RAF_RS00795 IPR000731 Sterol-sensing domain RAF_RS00795 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RAF_RS00795 IPR005665 Protein-export membrane protein SecF, bacterial RAF_RS00795 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial RAF_RS00800 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site RAF_RS00800 IPR011537 NADH ubiquinone oxidoreductase, F subunit RAF_RS00800 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain RAF_RS00800 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily RAF_RS00800 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain RAF_RS00800 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily RAF_RS00800 IPR019554 Soluble ligand binding domain RAF_RS00805 IPR019758 Peptidase S26A, signal peptidase I, conserved site RAF_RS00805 IPR019533 Peptidase S26 RAF_RS00805 IPR000223 Peptidase S26A, signal peptidase I RAF_RS00805 IPR036286 LexA/Signal peptidase-like superfamily RAF_RS00805 IPR019757 Peptidase S26A, signal peptidase I, lysine active site RAF_RS00810 IPR014720 Double-stranded RNA-binding domain RAF_RS00810 IPR011907 Ribonuclease III RAF_RS00810 IPR000999 Ribonuclease III domain RAF_RS00810 IPR036389 Ribonuclease III, endonuclease domain superfamily RAF_RS00815 IPR006073 GTP binding domain RAF_RS00815 IPR005662 GTP-binding protein Era RAF_RS00815 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00815 IPR005225 Small GTP-binding protein domain RAF_RS00815 IPR009019 K homology domain superfamily, prokaryotic type RAF_RS00815 IPR030388 Era-type guanine nucleotide-binding (G) domain RAF_RS00815 IPR015946 K homology domain-like, alpha/beta RAF_RS00815 IPR004044 K Homology domain, type 2 RAF_RS00815 IPR005728 Rickettsial palindromic element RAF_RS00820 IPR036397 Ribonuclease H superfamily RAF_RS00820 IPR002176 Crossover junction endodeoxyribonuclease RuvC RAF_RS00820 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site RAF_RS00820 IPR012337 Ribonuclease H-like superfamily RAF_RS00825 IPR029028 Alpha/beta knot methyltransferases RAF_RS00825 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RAF_RS00825 IPR001537 tRNA/rRNA methyltransferase, SpoU type RAF_RS00825 IPR004384 RNA methyltransferase TrmJ/LasT RAF_RS00840 IPR009367 Mitochondrial fission protein ELM1-like RAF_RS00845 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00845 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 RAF_RS00845 IPR000808 Mrp, conserved site RAF_RS00845 IPR019591 Mrp/NBP35 ATP-binding protein RAF_RS00850 IPR001107 Band 7 domain RAF_RS00850 IPR010201 HflK RAF_RS00850 IPR036013 Band 7/SPFH domain superfamily RAF_RS00850 IPR001972 Stomatin family RAF_RS00850 IPR020980 Menbrane protein HflK, N-terminal RAF_RS00855 IPR001107 Band 7 domain RAF_RS00855 IPR036013 Band 7/SPFH domain superfamily RAF_RS00855 IPR010200 HflC RAF_RS00860 IPR001940 Peptidase S1C RAF_RS00860 IPR036034 PDZ superfamily RAF_RS00860 IPR011782 Peptidase S1C, Do RAF_RS00860 IPR009003 Peptidase S1, PA clan RAF_RS00860 IPR001478 PDZ domain RAF_RS00865 IPR036873 Rhodanese-like domain superfamily RAF_RS00865 IPR040503 UPF0176, acylphosphatase-like domain RAF_RS00865 IPR001763 Rhodanese-like domain RAF_RS00865 IPR020936 Uncharacterised protein family UPF0176 RAF_RS00870 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit RAF_RS00870 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit RAF_RS00870 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site RAF_RS00870 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit RAF_RS00875 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit RAF_RS00875 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit RAF_RS00875 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor RAF_RS00880 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily RAF_RS00880 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal RAF_RS00880 IPR036188 FAD/NAD(P)-binding domain superfamily RAF_RS00880 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily RAF_RS00880 IPR011281 Succinate dehydrogenase, flavoprotein subunit RAF_RS00880 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain RAF_RS00880 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit RAF_RS00880 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site RAF_RS00885 IPR035906 MetI-like superfamily RAF_RS00885 IPR000515 ABC transporter type 1, transmembrane domain MetI-like RAF_RS00885 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain RAF_RS00890 IPR006032 Ribosomal protein S12/S23 RAF_RS00890 IPR012340 Nucleic acid-binding, OB-fold RAF_RS00890 IPR005679 Ribosomal protein S12, bacterial-type RAF_RS00895 IPR020606 Ribosomal protein S7, conserved site RAF_RS00895 IPR000235 Ribosomal protein S5/S7 RAF_RS00895 IPR005717 Ribosomal protein S7, bacterial/organellar-type RAF_RS00895 IPR023798 Ribosomal protein S7 domain RAF_RS00895 IPR036823 Ribosomal protein S7 domain superfamily RAF_RS00900 IPR035647 EF-G domain III/V-like RAF_RS00900 IPR009022 Elongation factor G, domain III RAF_RS00900 IPR041095 Elongation Factor G, domain II RAF_RS00900 IPR004540 Translation elongation factor EFG/EF2 RAF_RS00900 IPR009000 Translation protein, beta-barrel domain superfamily RAF_RS00900 IPR000795 Transcription factor, GTP-binding domain RAF_RS00900 IPR035649 EFG, domain V RAF_RS00900 IPR005517 Translation elongation factor EFG/EF2, domain IV RAF_RS00900 IPR020568 Ribosomal protein S5 domain 2-type fold RAF_RS00900 IPR000640 Elongation factor EFG, domain V-like RAF_RS00900 IPR004161 Translation elongation factor EFTu-like, domain 2 RAF_RS00900 IPR031157 Tr-type G domain, conserved site RAF_RS00900 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00900 IPR005225 Small GTP-binding protein domain RAF_RS00900 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAF_RS00910 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit RAF_RS00910 IPR038379 SecE superfamily RAF_RS00910 IPR005807 SecE subunit of protein translocation complex, bacterial-like RAF_RS00915 IPR006645 NusG, N-terminal RAF_RS00915 IPR036735 NusG, N-terminal domain superfamily RAF_RS00915 IPR014722 Ribosomal protein L2, domain 2 RAF_RS00915 IPR005824 KOW RAF_RS00915 IPR008991 Translation protein SH3-like domain superfamily RAF_RS00915 IPR001062 Transcription antitermination protein, NusG RAF_RS00915 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site RAF_RS00920 IPR006519 Ribosomal protein L11, bacterial-type RAF_RS00920 IPR020783 Ribosomal protein L11, C-terminal RAF_RS00920 IPR000911 Ribosomal protein L11/L12 RAF_RS00920 IPR020784 Ribosomal protein L11, N-terminal RAF_RS00920 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily RAF_RS00920 IPR020785 Ribosomal protein L11, conserved site RAF_RS00920 IPR036769 Ribosomal protein L11, C-terminal domain superfamily RAF_RS00925 IPR002143 Ribosomal protein L1 RAF_RS00925 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein RAF_RS00925 IPR023674 Ribosomal protein L1-like RAF_RS00925 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich RAF_RS00925 IPR023673 Ribosomal protein L1, conserved site RAF_RS00925 IPR005878 Ribosomal protein L1, bacterial-type RAF_RS00930 IPR022973 Ribosomal protein L10 RAF_RS00930 IPR002363 Ribosomal protein L10, eubacterial, conserved site RAF_RS00930 IPR001790 Ribosomal protein L10P RAF_RS00935 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RAF_RS00935 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily RAF_RS00935 IPR008932 Ribosomal protein L7/L12, oligomerisation RAF_RS00935 IPR013823 Ribosomal protein L7/L12, C-terminal RAF_RS00935 IPR000206 Ribosomal protein L7/L12 RAF_RS00940 IPR007644 RNA polymerase, beta subunit, protrusion RAF_RS00940 IPR007642 RNA polymerase Rpb2, domain 2 RAF_RS00940 IPR007121 RNA polymerase, beta subunit, conserved site RAF_RS00940 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily RAF_RS00940 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain RAF_RS00940 IPR007645 RNA polymerase Rpb2, domain 3 RAF_RS00940 IPR007641 RNA polymerase Rpb2, domain 7 RAF_RS00940 IPR014724 RNA polymerase Rpb2, OB-fold RAF_RS00940 IPR015712 DNA-directed RNA polymerase, subunit 2 RAF_RS00940 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain RAF_RS00940 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type RAF_RS00945 IPR007066 RNA polymerase Rpb1, domain 3 RAF_RS00945 IPR007080 RNA polymerase Rpb1, domain 1 RAF_RS00945 IPR006592 RNA polymerase, N-terminal RAF_RS00945 IPR042102 RNA polymerase Rpb1, domain 3 superfamily RAF_RS00945 IPR007083 RNA polymerase Rpb1, domain 4 RAF_RS00945 IPR007081 RNA polymerase Rpb1, domain 5 RAF_RS00945 IPR000722 RNA polymerase, alpha subunit RAF_RS00945 IPR012754 DNA-directed RNA polymerase, subunit beta-prime RAF_RS00945 IPR038120 RNA polymerase Rpb1, funnel domain superfamily RAF_RS00950 IPR029061 Thiamin diphosphate-binding fold RAF_RS00950 IPR005475 Transketolase-like, pyrimidine-binding domain RAF_RS00950 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain RAF_RS00950 IPR005728 Rickettsial palindromic element RAF_RS00950 IPR042179 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily RAF_RS00950 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal RAF_RS00950 IPR011603 2-oxoglutarate dehydrogenase E1 component RAF_RS00950 IPR001017 Dehydrogenase, E1 component RAF_RS00955 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B RAF_RS00955 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal RAF_RS00955 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal RAF_RS00955 IPR023042 Peptidase M17, leucine aminopeptidase RAF_RS00965 IPR021455 Protein of unknown function DUF3106 RAF_RS00970 IPR012340 Nucleic acid-binding, OB-fold RAF_RS00970 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) RAF_RS00970 IPR029351 GAD domain RAF_RS00970 IPR004115 GAD-like domain superfamily RAF_RS00970 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb RAF_RS00970 IPR006195 Aminoacyl-tRNA synthetase, class II RAF_RS00970 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type RAF_RS00970 IPR004524 Aspartate-tRNA ligase, type 1 RAF_RS00980 IPR006214 Bax inhibitor 1-related RAF_RS00985 IPR023940 Dihydrodipicolinate reductase RAF_RS00985 IPR036291 NAD(P)-binding domain superfamily RAF_RS00985 IPR022664 Dihydrodipicolinate reductase, conserved site RAF_RS00985 IPR022663 Dihydrodipicolinate reductase, C-terminal RAF_RS00985 IPR000846 Dihydrodipicolinate reductase, N-terminal RAF_RS00990 IPR002563 Flavin reductase like domain RAF_RS00990 IPR012349 FMN-binding split barrel RAF_RS00995 IPR001320 Ionotropic glutamate receptor RAF_RS00995 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RAF_RS00995 IPR018313 Solute-binding protein family 3, conserved site RAF_RS01000 IPR017959 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E RAF_RS01000 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic RAF_RS01000 IPR018027 Asn/Gln amidotransferase RAF_RS01000 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit RAF_RS01000 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site RAF_RS01000 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 2 RAF_RS01000 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain RAF_RS01000 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like RAF_RS01000 IPR042114 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 1 RAF_RS01005 IPR023631 Amidase signature domain RAF_RS01005 IPR036928 Amidase signature (AS) superfamily RAF_RS01005 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit RAF_RS01005 IPR020556 Amidase, conserved site RAF_RS01005 IPR000120 Amidase RAF_RS01010 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C RAF_RS01010 IPR003837 Glu-tRNAGln amidotransferase C subunit RAF_RS01015 IPR023584 Ribosome recycling factor domain RAF_RS01015 IPR002661 Ribosome recycling factor RAF_RS01015 IPR036191 RRF superfamily RAF_RS01020 IPR001048 Aspartate/glutamate/uridylate kinase RAF_RS01020 IPR036393 Acetylglutamate kinase-like superfamily RAF_RS01020 IPR015963 Uridylate kinase, bacteria RAF_RS01020 IPR011817 Uridylate kinase RAF_RS01030 IPR011701 Major facilitator superfamily RAF_RS01030 IPR004638 Drug resistance transporter EmrB-like RAF_RS01030 IPR036259 MFS transporter superfamily RAF_RS01030 IPR020846 Major facilitator superfamily domain RAF_RS01035 IPR024246 Protein of unknown function DUF2674 RAF_RS01055 IPR039910 Surface antigen D15-like RAF_RS01055 IPR034746 POTRA domain RAF_RS01055 IPR010827 POTRA domain, BamA/TamA-like RAF_RS01055 IPR000184 Bacterial surface antigen (D15) RAF_RS01055 IPR023707 Outer membrane protein assembly factor BamA RAF_RS01060 IPR008915 Peptidase M50 RAF_RS01060 IPR041489 PDZ domain 6 RAF_RS01060 IPR036034 PDZ superfamily RAF_RS01060 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase RAF_RS01060 IPR001478 PDZ domain RAF_RS01065 IPR035926 NusB-like superfamily RAF_RS01065 IPR006027 NusB/RsmB/TIM44 RAF_RS01065 IPR011605 NusB antitermination factor RAF_RS01070 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS01070 IPR002877 Ribosomal RNA methyltransferase FtsJ domain RAF_RS01070 IPR015507 Ribosomal RNA large subunit methyltransferase E RAF_RS01075 IPR029058 Alpha/Beta hydrolase fold RAF_RS01085 IPR005031 Coenzyme Q-binding protein COQ10, START domain RAF_RS01085 IPR023393 START-like domain superfamily RAF_RS01090 IPR005728 Rickettsial palindromic element RAF_RS01090 IPR012875 Succinate dehydrogenase assembly factor 4 RAF_RS01095 IPR006700 Ribosomal RNA small subunit methyltransferase E RAF_RS01095 IPR029028 Alpha/beta knot methyltransferases RAF_RS01095 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RAF_RS01095 IPR015947 PUA-like superfamily RAF_RS01100 IPR007211 Protein of unknown function DUF378 RAF_RS01105 IPR001036 Acriflavin resistance protein RAF_RS01105 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RAF_RS01110 IPR000119 Histone-like DNA-binding protein RAF_RS01110 IPR020816 Histone-like DNA-binding protein, conserved site RAF_RS01110 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily RAF_RS01115 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01115 IPR004622 DNA polymerase III, delta prime subunit RAF_RS01115 IPR015199 DNA polymerase III, delta subunit, C-terminal RAF_RS01115 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal RAF_RS01120 IPR004780 Signal recognition particle protein RAF_RS01120 IPR003593 AAA+ ATPase domain RAF_RS01120 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01120 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily RAF_RS01120 IPR013822 Signal recognition particle SRP54, helical bundle RAF_RS01120 IPR004125 Signal recognition particle, SRP54 subunit, M-domain RAF_RS01120 IPR022941 Signal recognition particle, SRP54 subunit RAF_RS01120 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain RAF_RS01120 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily RAF_RS01125 IPR002470 Peptidase S9A, prolyl oligopeptidase RAF_RS01125 IPR029058 Alpha/Beta hydrolase fold RAF_RS01125 IPR023302 Peptidase S9A, N-terminal domain RAF_RS01125 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain RAF_RS01135 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain RAF_RS01135 IPR023302 Peptidase S9A, N-terminal domain RAF_RS01135 IPR029058 Alpha/Beta hydrolase fold RAF_RS01135 IPR002470 Peptidase S9A, prolyl oligopeptidase RAF_RS01140 IPR023302 Peptidase S9A, N-terminal domain RAF_RS01140 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain RAF_RS01140 IPR002470 Peptidase S9A, prolyl oligopeptidase RAF_RS01140 IPR029058 Alpha/Beta hydrolase fold RAF_RS01145 IPR002470 Peptidase S9A, prolyl oligopeptidase RAF_RS01145 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain RAF_RS01145 IPR023302 Peptidase S9A, N-terminal domain RAF_RS01145 IPR029058 Alpha/Beta hydrolase fold RAF_RS01150 IPR007197 Radical SAM RAF_RS01150 IPR023404 Radical SAM, alpha/beta horseshoe RAF_RS01150 IPR004559 Heme chaperone HemW-like RAF_RS01150 IPR010723 HemN, C-terminal RAF_RS01150 IPR006638 Elp3/MiaB/NifB RAF_RS01150 IPR034505 Anaerobic coproporphyrinogen-III oxidase RAF_RS01155 IPR036770 Ankyrin repeat-containing domain superfamily RAF_RS01155 IPR002110 Ankyrin repeat RAF_RS01155 IPR020683 Ankyrin repeat-containing domain RAF_RS01160 IPR036770 Ankyrin repeat-containing domain superfamily RAF_RS01160 IPR002110 Ankyrin repeat RAF_RS01160 IPR020683 Ankyrin repeat-containing domain RAF_RS01180 IPR023954 C4-dicarboxylate transport protein RAF_RS01180 IPR001991 Sodium:dicarboxylate symporter RAF_RS01180 IPR018107 Sodium:dicarboxylate symporter, conserved site RAF_RS01180 IPR036458 Sodium:dicarboxylate symporter superfamily RAF_RS01190 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family RAF_RS01190 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily RAF_RS01195 IPR004167 Peripheral subunit-binding domain RAF_RS01195 IPR011053 Single hybrid motif RAF_RS01195 IPR006255 Dihydrolipoamide succinyltransferase RAF_RS01195 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily RAF_RS01195 IPR036625 E3-binding domain superfamily RAF_RS01195 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain RAF_RS01195 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site RAF_RS01195 IPR000089 Biotin/lipoyl attachment RAF_RS01200 IPR029061 Thiamin diphosphate-binding fold RAF_RS01200 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal RAF_RS01200 IPR001017 Dehydrogenase, E1 component RAF_RS01200 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain RAF_RS01200 IPR042179 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily RAF_RS01200 IPR005475 Transketolase-like, pyrimidine-binding domain RAF_RS01200 IPR011603 2-oxoglutarate dehydrogenase E1 component RAF_RS01205 IPR001333 Peptidase M32, carboxypeptidase Taq RAF_RS01210 IPR004604 DNA recombination/repair protein RecN RAF_RS01210 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01210 IPR003395 RecF/RecN/SMC, N-terminal RAF_RS01215 IPR017689 Outer membrane protein assembly factor BamD RAF_RS01215 IPR013026 Tetratricopeptide repeat-containing domain RAF_RS01215 IPR011990 Tetratricopeptide-like helical domain superfamily RAF_RS01215 IPR039565 Outer membrane lipoprotein BamD-like RAF_RS01225 IPR001623 DnaJ domain RAF_RS01225 IPR012724 Chaperone DnaJ RAF_RS01225 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily RAF_RS01225 IPR008971 HSP40/DnaJ peptide-binding RAF_RS01225 IPR036869 Chaperone J-domain superfamily RAF_RS01225 IPR001305 Heat shock protein DnaJ, cysteine-rich domain RAF_RS01225 IPR002939 Chaperone DnaJ, C-terminal RAF_RS01225 IPR018253 DnaJ domain, conserved site RAF_RS01230 IPR013126 Heat shock protein 70 family RAF_RS01230 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily RAF_RS01230 IPR012725 Chaperone DnaK RAF_RS01230 IPR018181 Heat shock protein 70, conserved site RAF_RS01230 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily RAF_RS01255 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01255 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal RAF_RS01265 IPR033945 Cytochrome c oxidase subunit III domain RAF_RS01265 IPR024791 Cytochrome c oxidase subunit III RAF_RS01265 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle RAF_RS01265 IPR035973 Cytochrome c oxidase subunit III-like superfamily RAF_RS01265 IPR000298 Cytochrome c oxidase subunit III-like RAF_RS01270 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 RAF_RS01275 IPR011723 Zinc finger/thioredoxin putative RAF_RS01280 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily RAF_RS01280 IPR011004 Trimeric LpxA-like superfamily RAF_RS01280 IPR001451 Hexapeptide repeat RAF_RS01280 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 RAF_RS01280 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family RAF_RS01295 IPR012338 Beta-lactamase/transpeptidase-like RAF_RS01295 IPR023346 Lysozyme-like domain superfamily RAF_RS01295 IPR001264 Glycosyl transferase, family 51 RAF_RS01295 IPR001460 Penicillin-binding protein, transpeptidase RAF_RS01295 IPR011815 Penicillin-binding protein 1C RAF_RS01295 IPR036950 Penicillin binding protein transglycosylase domain RAF_RS01295 IPR009647 Penicillin-binding, C-terminal RAF_RS01335 IPR005546 Autotransporter beta-domain RAF_RS01335 IPR036709 Autotransporter beta-domain superfamily RAF_RS01340 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS01340 IPR006016 UspA RAF_RS01340 IPR006015 Universal stress protein A family RAF_RS01355 IPR001055 Adrenodoxin RAF_RS01355 IPR018298 Adrenodoxin, iron-sulphur binding site RAF_RS01355 IPR012675 Beta-grasp domain superfamily RAF_RS01355 IPR036010 2Fe-2S ferredoxin-like superfamily RAF_RS01355 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain RAF_RS01360 IPR010236 ISC system FeS cluster assembly, HscA chaperone RAF_RS01360 IPR013126 Heat shock protein 70 family RAF_RS01360 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily RAF_RS01360 IPR018181 Heat shock protein 70, conserved site RAF_RS01360 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily RAF_RS01365 IPR036869 Chaperone J-domain superfamily RAF_RS01365 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain RAF_RS01365 IPR036386 HscB, C-terminal domain superfamily RAF_RS01365 IPR004640 Co-chaperone Hsc20 RAF_RS01365 IPR001623 DnaJ domain RAF_RS01370 IPR036397 Ribonuclease H superfamily RAF_RS01370 IPR012337 Ribonuclease H-like superfamily RAF_RS01370 IPR024567 Ribonuclease HII/HIII domain RAF_RS01370 IPR001352 Ribonuclease HII/HIII RAF_RS01370 IPR022898 Ribonuclease HII RAF_RS01375 IPR041471 UvrB, interaction domain RAF_RS01375 IPR014001 Helicase superfamily 1/2, ATP-binding domain RAF_RS01375 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01375 IPR001943 UVR domain RAF_RS01375 IPR036876 UVR domain superfamily RAF_RS01375 IPR004807 UvrABC system, subunit B RAF_RS01375 IPR024759 UvrB, YAD/RRR-motif-containing domain RAF_RS01375 IPR001650 Helicase, C-terminal RAF_RS01375 IPR006935 Helicase/UvrB, N-terminal RAF_RS01380 IPR002109 Glutaredoxin RAF_RS01380 IPR014025 Glutaredoxin subgroup RAF_RS01380 IPR011900 Glutaredoxin, GrxC RAF_RS01380 IPR036249 Thioredoxin-like superfamily RAF_RS01380 IPR011767 Glutaredoxin active site RAF_RS01390 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal RAF_RS01390 IPR005743 DNA gyrase, subunit A RAF_RS01390 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat RAF_RS01390 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta RAF_RS01390 IPR013760 DNA topoisomerase, type IIA-like domain superfamily RAF_RS01390 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal RAF_RS01390 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily RAF_RS01430 IPR036821 Peptide deformylase superfamily RAF_RS01430 IPR023635 Peptide deformylase RAF_RS01435 IPR005794 Methionyl-tRNA formyltransferase RAF_RS01435 IPR041711 Methionyl-tRNA formyltransferase, N-terminal domain RAF_RS01435 IPR005793 Formyl transferase, C-terminal RAF_RS01435 IPR011034 Formyl transferase-like, C-terminal domain superfamily RAF_RS01435 IPR036477 Formyl transferase, N-terminal domain superfamily RAF_RS01435 IPR002376 Formyl transferase, N-terminal RAF_RS01435 IPR037022 Formyl transferase, C-terminal domain superfamily RAF_RS01470 IPR042118 QueA, domain 1 RAF_RS01470 IPR042119 QueA, domain 2 RAF_RS01470 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA RAF_RS01470 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily RAF_RS01485 IPR011527 ABC transporter type 1, transmembrane domain RAF_RS01485 IPR017871 ABC transporter, conserved site RAF_RS01485 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01485 IPR039421 Type I protein exporter RAF_RS01485 IPR003593 AAA+ ATPase domain RAF_RS01485 IPR036640 ABC transporter type 1, transmembrane domain superfamily RAF_RS01485 IPR003439 ABC transporter-like RAF_RS01490 IPR022715 Protein of unknown function DUF2671 RAF_RS01495 IPR002585 Cytochrome ubiquinol oxidase subunit 1 RAF_RS01500 IPR003317 Cytochrome ubiquinol oxidase subunit 2 RAF_RS01505 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RAF_RS01505 IPR036165 YefM-like superfamily RAF_RS01515 IPR029044 Nucleotide-diphospho-sugar transferases RAF_RS01515 IPR001173 Glycosyltransferase 2-like RAF_RS01520 IPR007863 Peptidase M16, C-terminal RAF_RS01520 IPR001431 Peptidase M16, zinc-binding site RAF_RS01520 IPR011765 Peptidase M16, N-terminal RAF_RS01520 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like RAF_RS01525 IPR033934 Bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide synthase RAF_RS01525 IPR028923 SAICAR synthetase/ADE2, N-terminal RAF_RS01535 IPR006195 Aminoacyl-tRNA synthetase, class II RAF_RS01535 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) RAF_RS01535 IPR004154 Anticodon-binding RAF_RS01535 IPR004095 TGS RAF_RS01535 IPR012675 Beta-grasp domain superfamily RAF_RS01535 IPR012947 Threonyl/alanyl tRNA synthetase, SAD RAF_RS01535 IPR033728 Threonine-tRNA ligase catalytic core domain RAF_RS01535 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily RAF_RS01535 IPR002320 Threonine-tRNA ligase, class IIa RAF_RS01535 IPR012676 TGS-like RAF_RS01535 IPR036621 Anticodon-binding domain superfamily RAF_RS01550 IPR039421 Type I protein exporter RAF_RS01550 IPR011527 ABC transporter type 1, transmembrane domain RAF_RS01550 IPR036640 ABC transporter type 1, transmembrane domain superfamily RAF_RS01550 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01550 IPR005074 Peptidase C39, bacteriocin processing RAF_RS01550 IPR005897 Peptidase C39, ABC-type bacteriocin transporter RAF_RS01550 IPR017871 ABC transporter, conserved site RAF_RS01550 IPR003439 ABC transporter-like RAF_RS01550 IPR003593 AAA+ ATPase domain RAF_RS01555 IPR003439 ABC transporter-like RAF_RS01555 IPR036640 ABC transporter type 1, transmembrane domain superfamily RAF_RS01555 IPR017871 ABC transporter, conserved site RAF_RS01555 IPR011917 ABC transporter, lipid A export, MsbA RAF_RS01555 IPR011527 ABC transporter type 1, transmembrane domain RAF_RS01555 IPR003593 AAA+ ATPase domain RAF_RS01555 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01555 IPR039421 Type I protein exporter RAF_RS01570 IPR022589 Protein of unknown function DUF2660 RAF_RS01585 IPR010130 Type I secretion outer membrane protein, TolC RAF_RS01585 IPR003423 Outer membrane efflux protein RAF_RS01590 IPR019632 Protein of unknown function DUF2497 RAF_RS01600 IPR020683 Ankyrin repeat-containing domain RAF_RS01600 IPR036770 Ankyrin repeat-containing domain superfamily RAF_RS01605 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 RAF_RS01605 IPR002288 DNA gyrase B subunit, C-terminal RAF_RS01605 IPR003594 Histidine kinase/HSP90-like ATPase RAF_RS01605 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAF_RS01605 IPR020568 Ribosomal protein S5 domain 2-type fold RAF_RS01605 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAF_RS01605 IPR018522 DNA topoisomerase, type IIA, conserved site RAF_RS01605 IPR001241 DNA topoisomerase, type IIA RAF_RS01605 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative RAF_RS01605 IPR006171 TOPRIM domain RAF_RS01605 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal RAF_RS01605 IPR013760 DNA topoisomerase, type IIA-like domain superfamily RAF_RS01610 IPR005151 Tail specific protease RAF_RS01610 IPR004447 C-terminal-processing peptidase S41A RAF_RS01610 IPR036034 PDZ superfamily RAF_RS01610 IPR001478 PDZ domain RAF_RS01610 IPR029045 ClpP/crotonase-like domain superfamily RAF_RS01615 IPR000014 PAS domain RAF_RS01615 IPR003594 Histidine kinase/HSP90-like ATPase RAF_RS01615 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAF_RS01615 IPR005467 Histidine kinase domain RAF_RS01615 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily RAF_RS01615 IPR035965 PAS domain superfamily RAF_RS01615 IPR013767 PAS fold RAF_RS01615 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RAF_RS01615 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain RAF_RS01625 IPR022588 Protein of unknown function DUF2659 RAF_RS01630 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily RAF_RS01630 IPR015943 WD40/YVTN repeat-like-containing domain superfamily RAF_RS01630 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RAF_RS01630 IPR002372 Pyrrolo-quinoline quinone repeat RAF_RS01635 IPR005822 Ribosomal protein L13 RAF_RS01635 IPR036899 Ribosomal protein L13 superfamily RAF_RS01635 IPR005823 Ribosomal protein L13, bacterial-type RAF_RS01635 IPR023563 Ribosomal protein L13, conserved site RAF_RS01640 IPR020568 Ribosomal protein S5 domain 2-type fold RAF_RS01640 IPR020574 Ribosomal protein S9, conserved site RAF_RS01640 IPR023035 Ribosomal protein S9, bacterial/plastid RAF_RS01640 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAF_RS01640 IPR000754 Ribosomal protein S9 RAF_RS01670 IPR020084 NUDIX hydrolase, conserved site RAF_RS01670 IPR022927 RNA pyrophosphohydrolase RppH RAF_RS01670 IPR015797 NUDIX hydrolase-like domain superfamily RAF_RS01670 IPR000086 NUDIX hydrolase domain RAF_RS01675 IPR011006 CheY-like superfamily RAF_RS01675 IPR000160 GGDEF domain RAF_RS01675 IPR029787 Nucleotide cyclase RAF_RS01675 IPR001789 Signal transduction response regulator, receiver domain RAF_RS01680 IPR020599 Translation elongation factor P/YeiP RAF_RS01680 IPR013185 Translation elongation factor, KOW-like RAF_RS01680 IPR008991 Translation protein SH3-like domain superfamily RAF_RS01680 IPR011768 Translation elongation factor P RAF_RS01680 IPR001059 Translation elongation factor P/YeiP, central RAF_RS01680 IPR015365 Elongation factor P, C-terminal RAF_RS01680 IPR012340 Nucleic acid-binding, OB-fold RAF_RS01680 IPR014722 Ribosomal protein L2, domain 2 RAF_RS01680 IPR013852 Translation elongation factor P/YeiP, conserved site RAF_RS01685 IPR020550 Inositol monophosphatase, conserved site RAF_RS01685 IPR000760 Inositol monophosphatase-like RAF_RS01685 IPR020583 Inositol monophosphatase, metal-binding site RAF_RS01685 IPR022337 Inositol monophosphatase, SuhB RAF_RS01685 IPR033942 Inositol monophosphatase RAF_RS01690 IPR021277 Protein of unknown function DUF2610 RAF_RS01695 IPR003817 Phosphatidylserine decarboxylase-related RAF_RS01695 IPR033175 Phosphatidylserine decarboxylase, archaeal-type RAF_RS01700 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase RAF_RS01700 IPR000462 CDP-alcohol phosphatidyltransferase RAF_RS01705 IPR039562 Membrane fusion protein, biotin-lipoyl like domain RAF_RS01720 IPR035919 EAL domain superfamily RAF_RS01720 IPR001633 EAL domain RAF_RS01725 IPR000713 Mur ligase, N-terminal catalytic domain RAF_RS01725 IPR005758 UDP-N-acetylmuramate--L-alanine ligase RAF_RS01725 IPR036565 Mur-like, catalytic domain superfamily RAF_RS01725 IPR004101 Mur ligase, C-terminal RAF_RS01725 IPR013221 Mur ligase, central RAF_RS01725 IPR036615 Mur ligase, C-terminal domain superfamily RAF_RS01730 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily RAF_RS01730 IPR006094 FAD linked oxidase, N-terminal RAF_RS01730 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase RAF_RS01730 IPR016169 FAD-binding, type PCMH, subdomain 2 RAF_RS01730 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal RAF_RS01730 IPR036318 FAD-binding, type PCMH-like superfamily RAF_RS01730 IPR016166 FAD-binding domain, PCMH-type RAF_RS01730 IPR016167 FAD-binding, type PCMH, subdomain 1 RAF_RS01735 IPR011761 ATP-grasp fold RAF_RS01735 IPR013815 ATP-grasp fold, subdomain 1 RAF_RS01735 IPR005905 D-alanine--D-alanine ligase RAF_RS01735 IPR011095 D-alanine--D-alanine ligase, C-terminal RAF_RS01735 IPR011127 D-alanine--D-alanine ligase, N-terminal domain RAF_RS01735 IPR016185 Pre-ATP-grasp domain superfamily RAF_RS01735 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site RAF_RS01740 IPR026579 Cell division protein FtsQ RAF_RS01740 IPR013685 POTRA domain, FtsQ-type RAF_RS01740 IPR005548 Cell division protein FtsQ/DivIB RAF_RS01740 IPR034746 POTRA domain RAF_RS01745 IPR020823 Cell division protein FtsA RAF_RS01745 IPR003494 SHS2 domain inserted in FtsA RAF_RS01750 IPR002810 NfeD-like, C-terminal domain RAF_RS01755 IPR009056 Cytochrome c-like domain RAF_RS01755 IPR036909 Cytochrome c-like domain superfamily RAF_RS01755 IPR002327 Cytochrome c, class IA/ IB RAF_RS01765 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal RAF_RS01765 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal RAF_RS01765 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase RAF_RS01765 IPR020568 Ribosomal protein S5 domain 2-type fold RAF_RS01770 IPR036259 MFS transporter superfamily RAF_RS01775 IPR003029 S1 domain RAF_RS01775 IPR012340 Nucleic acid-binding, OB-fold RAF_RS01775 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G RAF_RS01775 IPR028878 Ribonuclease E RAF_RS01775 IPR004659 Ribonuclease E/G RAF_RS01775 IPR022967 RNA-binding domain, S1 RAF_RS01780 IPR003780 COX15/CtaA family RAF_RS01780 IPR023754 Heme A synthase, type 2 RAF_RS01785 IPR020103 Pseudouridine synthase, catalytic domain superfamily RAF_RS01785 IPR006145 Pseudouridine synthase, RsuA/RluA RAF_RS01785 IPR002942 RNA-binding S4 domain RAF_RS01785 IPR036986 RNA-binding S4 domain superfamily RAF_RS01785 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site RAF_RS01790 IPR021860 Peptidase S12, Pab87-related, C-terminal RAF_RS01790 IPR012338 Beta-lactamase/transpeptidase-like RAF_RS01790 IPR001466 Beta-lactamase-related RAF_RS01795 IPR020847 AP endonuclease 1, binding site RAF_RS01795 IPR037493 Exodeoxyribonuclease III-like RAF_RS01795 IPR005135 Endonuclease/exonuclease/phosphatase RAF_RS01795 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RAF_RS01795 IPR020848 AP endonuclease 1, conserved site RAF_RS01795 IPR004808 AP endonuclease 1 RAF_RS01800 IPR029061 Thiamin diphosphate-binding fold RAF_RS01800 IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y RAF_RS01800 IPR001017 Dehydrogenase, E1 component RAF_RS01805 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II RAF_RS01805 IPR005475 Transketolase-like, pyrimidine-binding domain RAF_RS01805 IPR029061 Thiamin diphosphate-binding fold RAF_RS01805 IPR027110 Pyruvate dehydrogenase E1 component subunit beta RAF_RS01805 IPR033248 Transketolase, C-terminal domain RAF_RS01810 IPR031157 Tr-type G domain, conserved site RAF_RS01810 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01810 IPR005225 Small GTP-binding protein domain RAF_RS01810 IPR000795 Transcription factor, GTP-binding domain RAF_RS01810 IPR035647 EF-G domain III/V-like RAF_RS01810 IPR035651 BipA, domain V RAF_RS01810 IPR009000 Translation protein, beta-barrel domain superfamily RAF_RS01810 IPR042116 GTP-binding protein TypA/BipA, C-terminal RAF_RS01810 IPR006298 GTP-binding protein TypA RAF_RS01810 IPR000640 Elongation factor EFG, domain V-like RAF_RS01810 IPR004161 Translation elongation factor EFTu-like, domain 2 RAF_RS01830 IPR040978 Hypothetical protein TT1725 RAF_RS01830 IPR014273 Isocitrate dehydrogenase, alphaproteobacteria-type RAF_RS01830 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site RAF_RS01830 IPR024084 Isopropylmalate dehydrogenase-like domain RAF_RS01835 IPR005133 Na+/H+ antiporter subunit G RAF_RS01840 IPR005663 Monovalent cation proton antiporter subunit A RAF_RS01840 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup RAF_RS01840 IPR025383 Domain of unknown function DUF4040 RAF_RS01840 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal RAF_RS01840 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit RAF_RS01845 IPR003544 Cytochrome c-type biogenesis protein CcmB RAF_RS01850 IPR022714 Protein of unknown function DUF2670 RAF_RS01855 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit RAF_RS01855 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal RAF_RS01855 IPR006311 Twin-arginine translocation pathway, signal sequence RAF_RS01855 IPR005805 Rieske iron-sulphur protein, C-terminal RAF_RS01855 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily RAF_RS01855 IPR017941 Rieske [2Fe-2S] iron-sulphur domain RAF_RS01855 IPR014349 Rieske iron-sulphur protein RAF_RS01860 IPR005798 Cytochrome b/b6, C-terminal RAF_RS01860 IPR036150 Cytochrome b/b6, C-terminal domain superfamily RAF_RS01860 IPR027387 Cytochrome b/b6-like domain superfamily RAF_RS01860 IPR005797 Cytochrome b/b6, N-terminal RAF_RS01860 IPR016174 Di-haem cytochrome, transmembrane RAF_RS01860 IPR030689 Cytochrome b RAF_RS01865 IPR009056 Cytochrome c-like domain RAF_RS01865 IPR036909 Cytochrome c-like domain superfamily RAF_RS01865 IPR002326 Cytochrome c1 RAF_RS01880 IPR002068 Alpha crystallin/Hsp20 domain RAF_RS01880 IPR031107 Small heat shock protein HSP20 RAF_RS01880 IPR008978 HSP20-like chaperone RAF_RS01900 IPR005139 Peptide chain release factor RAF_RS01900 IPR000352 Peptide chain release factor class I RAF_RS01900 IPR004374 Peptide chain release factor 2 RAF_RS01905 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01905 IPR013842 GTP-binding protein LepA, C-terminal RAF_RS01905 IPR005225 Small GTP-binding protein domain RAF_RS01905 IPR031157 Tr-type G domain, conserved site RAF_RS01905 IPR006297 Elongation factor 4 RAF_RS01905 IPR004161 Translation elongation factor EFTu-like, domain 2 RAF_RS01905 IPR035654 Elongation factor 4, domain IV RAF_RS01905 IPR038363 LepA, C-terminal domain superfamily RAF_RS01905 IPR000640 Elongation factor EFG, domain V-like RAF_RS01905 IPR000795 Transcription factor, GTP-binding domain RAF_RS01905 IPR035647 EF-G domain III/V-like RAF_RS01945 IPR003607 HD/PDEase domain RAF_RS01945 IPR004095 TGS RAF_RS01945 IPR007685 RelA/SpoT RAF_RS01945 IPR004811 RelA/SpoT family RAF_RS01945 IPR012675 Beta-grasp domain superfamily RAF_RS01945 IPR002912 ACT domain RAF_RS01945 IPR012676 TGS-like RAF_RS01945 IPR033655 RelA, TGS domain RAF_RS01955 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site RAF_RS01955 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB RAF_RS01955 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA RAF_RS01960 IPR023302 Peptidase S9A, N-terminal domain RAF_RS01960 IPR002470 Peptidase S9A, prolyl oligopeptidase RAF_RS01960 IPR002471 Peptidase S9, serine active site RAF_RS01960 IPR029058 Alpha/Beta hydrolase fold RAF_RS01960 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain RAF_RS01965 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 RAF_RS01965 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit RAF_RS01970 IPR002716 PIN domain RAF_RS01970 IPR022907 VapC family RAF_RS01970 IPR029060 PIN-like domain superfamily RAF_RS01985 IPR025383 Domain of unknown function DUF4040 RAF_RS01985 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal RAF_RS01985 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit RAF_RS01990 IPR003918 NADH:ubiquinone oxidoreductase RAF_RS01990 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit RAF_RS01995 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like RAF_RS01995 IPR006673 Mnh complex subunit C1 RAF_RS02010 IPR024444 Protein of unknown function DUF2706 RAF_RS02015 IPR007430 Bacterial virulence protein VirB8 RAF_RS02015 IPR026264 Type IV secretion system protein VirB8/PtlE RAF_RS02015 IPR032710 NTF2-like domain superfamily RAF_RS02020 IPR010258 Conjugal transfer, TrbG/VirB9/CagX RAF_RS02020 IPR014148 P-type conjugative transfer protein VirB9 RAF_RS02020 IPR033645 VirB9/CagX/TrbG, C-terminal RAF_RS02020 IPR038161 VirB9/CagX/TrbG, C-terminal domain superfamily RAF_RS02025 IPR042217 Type IV secretion system, VirB10/TrbI RAF_RS02025 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI RAF_RS02030 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02030 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RAF_RS02030 IPR001482 Type II/IV secretion system protein RAF_RS02030 IPR014155 Type IV secretion system protein VirB11 RAF_RS02035 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02035 IPR003688 Type IV secretion system protein TraG/VirD4 RAF_RS02075 IPR022565 Protein of unknown function DUF2608 RAF_RS02080 IPR022565 Protein of unknown function DUF2608 RAF_RS02085 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ RAF_RS02085 IPR020583 Inositol monophosphatase, metal-binding site RAF_RS02085 IPR000760 Inositol monophosphatase-like RAF_RS02085 IPR020550 Inositol monophosphatase, conserved site RAF_RS02090 IPR007695 DNA mismatch repair protein MutS-like, N-terminal RAF_RS02090 IPR005748 DNA mismatch repair protein MutS RAF_RS02090 IPR007696 DNA mismatch repair protein MutS, core RAF_RS02090 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02090 IPR036678 MutS, connector domain superfamily RAF_RS02090 IPR007860 DNA mismatch repair protein MutS, connector domain RAF_RS02090 IPR017261 DNA mismatch repair protein MutS/MSH RAF_RS02090 IPR000432 DNA mismatch repair protein MutS, C-terminal RAF_RS02090 IPR007861 DNA mismatch repair protein MutS, clamp RAF_RS02090 IPR016151 DNA mismatch repair protein MutS, N-terminal RAF_RS02090 IPR036187 DNA mismatch repair protein MutS, core domain superfamily RAF_RS02095 IPR004785 Ribose 5-phosphate isomerase B RAF_RS02095 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily RAF_RS02095 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family RAF_RS02105 IPR002725 Protein of unknown function DUF45 RAF_RS02110 IPR036098 Thymidylate synthase ThyX superfamily RAF_RS02110 IPR003669 Thymidylate synthase ThyX RAF_RS02115 IPR011042 Six-bladed beta-propeller, TolB-like RAF_RS02115 IPR014167 Tol-Pal system protein TolB RAF_RS02115 IPR011659 WD40-like Beta Propeller RAF_RS02115 IPR007195 TolB, N-terminal RAF_RS02115 IPR036752 TolB, N-terminal domain superfamily RAF_RS02120 IPR000943 RNA polymerase sigma-70 RAF_RS02120 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria RAF_RS02120 IPR013324 RNA polymerase sigma factor, region 3/4-like RAF_RS02120 IPR014284 RNA polymerase sigma-70 like domain RAF_RS02120 IPR007627 RNA polymerase sigma-70 region 2 RAF_RS02120 IPR009042 RNA polymerase sigma-70 region 1.2 RAF_RS02120 IPR013325 RNA polymerase sigma factor, region 2 RAF_RS02120 IPR007630 RNA polymerase sigma-70 region 4 RAF_RS02125 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain superfamily RAF_RS02125 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 RAF_RS02135 IPR004506 tRNA-specific 2-thiouridylase RAF_RS02135 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS02135 IPR023382 Adenine nucleotide alpha hydrolase-like domains RAF_RS02140 IPR004758 Amino acid transporter RAF_RS02140 IPR002293 Amino acid/polyamine transporter I RAF_RS02145 IPR036621 Anticodon-binding domain superfamily RAF_RS02145 IPR006195 Aminoacyl-tRNA synthetase, class II RAF_RS02145 IPR033656 Histidyl-anticodon-binding RAF_RS02145 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit RAF_RS02145 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain RAF_RS02145 IPR015807 Histidine-tRNA ligase RAF_RS02145 IPR004154 Anticodon-binding RAF_RS02150 IPR003439 ABC transporter-like RAF_RS02150 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02150 IPR003593 AAA+ ATPase domain RAF_RS02150 IPR032781 ABC-transporter extension domain RAF_RS02175 IPR014163 Tol-Pal system, TolQ RAF_RS02175 IPR002898 MotA/TolQ/ExbB proton channel RAF_RS02180 IPR003400 Biopolymer transport protein ExbD/TolR RAF_RS02190 IPR007685 RelA/SpoT RAF_RS02190 IPR003607 HD/PDEase domain RAF_RS02190 IPR004811 RelA/SpoT family RAF_RS02190 IPR033655 RelA, TGS domain RAF_RS02190 IPR012675 Beta-grasp domain superfamily RAF_RS02190 IPR012676 TGS-like RAF_RS02190 IPR002912 ACT domain RAF_RS02190 IPR004095 TGS RAF_RS02195 IPR005829 Sugar transporter, conserved site RAF_RS02195 IPR011701 Major facilitator superfamily RAF_RS02195 IPR020846 Major facilitator superfamily domain RAF_RS02195 IPR036259 MFS transporter superfamily RAF_RS02200 IPR006144 Secretion protein HlyD, conserved site RAF_RS02200 IPR010129 Type I secretion membrane fusion protein, HlyD family RAF_RS02205 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02205 IPR010128 ATPase, type I secretion system, PrtD RAF_RS02205 IPR017871 ABC transporter, conserved site RAF_RS02205 IPR003439 ABC transporter-like RAF_RS02205 IPR036640 ABC transporter type 1, transmembrane domain superfamily RAF_RS02205 IPR003593 AAA+ ATPase domain RAF_RS02205 IPR011527 ABC transporter type 1, transmembrane domain RAF_RS02210 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type RAF_RS02210 IPR012080 Aspartate-semialdehyde dehydrogenase RAF_RS02210 IPR036291 NAD(P)-binding domain superfamily RAF_RS02210 IPR000534 Semialdehyde dehydrogenase, NAD-binding RAF_RS02210 IPR012280 Semialdehyde dehydrogenase, dimerisation domain RAF_RS02215 IPR036265 HIT-like superfamily RAF_RS02215 IPR011146 HIT-like domain RAF_RS02215 IPR001310 Histidine triad (HIT) protein RAF_RS02215 IPR019808 Histidine triad, conserved site RAF_RS02220 IPR024399 Protein of unknown function DUF2628 RAF_RS02225 IPR023333 Proteasome B-type subunit RAF_RS02225 IPR001353 Proteasome, subunit alpha/beta RAF_RS02225 IPR022281 ATP-dependent protease, HslV subunit RAF_RS02225 IPR029055 Nucleophile aminohydrolases, N-terminal RAF_RS02230 IPR001208 MCM domain RAF_RS02230 IPR019489 Clp ATPase, C-terminal RAF_RS02230 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02230 IPR003959 ATPase, AAA-type, core RAF_RS02230 IPR003593 AAA+ ATPase domain RAF_RS02230 IPR004491 Heat shock protein HslU RAF_RS02245 IPR003593 AAA+ ATPase domain RAF_RS02245 IPR001208 MCM domain RAF_RS02245 IPR025158 Mg chelatase-related protein, C-terminal domain RAF_RS02245 IPR000523 Magnesium chelatase ChlI domain RAF_RS02245 IPR004482 Mg chelatase-related protein RAF_RS02245 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02245 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAF_RS02245 IPR020568 Ribosomal protein S5 domain 2-type fold RAF_RS02260 IPR022437 Rickettsia palindromic element RPE3 RAF_RS02260 IPR003835 Glycosyl transferase, family 19 RAF_RS02270 IPR003770 Endolytic murein transglycosylase RAF_RS02275 IPR002908 Frataxin/CyaY RAF_RS02275 IPR020895 Frataxin conserved site RAF_RS02275 IPR036524 Frataxin/CyaY superfamily RAF_RS02295 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding RAF_RS02295 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial RAF_RS02295 IPR000924 Glutamyl/glutaminyl-tRNA synthetase RAF_RS02295 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site RAF_RS02295 IPR033910 Glutamyl-tRNA synthetase RAF_RS02295 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 RAF_RS02295 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS02295 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain RAF_RS02300 IPR013498 DNA topoisomerase, type IA, zn finger RAF_RS02300 IPR005733 DNA topoisomerase I, bacterial-type RAF_RS02300 IPR034149 DNA topoisomerase 1, TOPRIM domain RAF_RS02300 IPR028612 DNA topoisomerase I, type IA RAF_RS02300 IPR003602 DNA topoisomerase, type IA, DNA-binding domain RAF_RS02300 IPR023405 DNA topoisomerase, type IA, core domain RAF_RS02300 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 RAF_RS02300 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 RAF_RS02300 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 RAF_RS02300 IPR013497 DNA topoisomerase, type IA, central RAF_RS02300 IPR023406 DNA topoisomerase, type IA, active site RAF_RS02300 IPR003601 DNA topoisomerase, type IA, domain 2 RAF_RS02300 IPR000380 DNA topoisomerase, type IA RAF_RS02300 IPR006171 TOPRIM domain RAF_RS02300 IPR025589 Topoisomerase C-terminal repeat RAF_RS02305 IPR036388 Winged helix-like DNA-binding domain superfamily RAF_RS02305 IPR003488 DNA recombination-mediator protein A RAF_RS02305 IPR041614 DprA, winged helix domain RAF_RS02310 IPR010994 RuvA domain 2-like RAF_RS02310 IPR041614 DprA, winged helix domain RAF_RS02310 IPR003488 DNA recombination-mediator protein A RAF_RS02310 IPR036388 Winged helix-like DNA-binding domain superfamily RAF_RS02315 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant RAF_RS02315 IPR024706 Peroxiredoxin, AhpC-type RAF_RS02315 IPR019479 Peroxiredoxin, C-terminal RAF_RS02315 IPR013766 Thioredoxin domain RAF_RS02315 IPR036249 Thioredoxin-like superfamily RAF_RS02320 IPR001107 Band 7 domain RAF_RS02320 IPR036013 Band 7/SPFH domain superfamily RAF_RS02320 IPR018080 Band 7/stomatin-like, conserved site RAF_RS02320 IPR001972 Stomatin family RAF_RS02330 IPR012549 Phosphoethanolamine transferase, N-terminal RAF_RS02330 IPR000917 Sulfatase, N-terminal RAF_RS02330 IPR017850 Alkaline-phosphatase-like, core domain superfamily RAF_RS02330 IPR040423 Phosphoethanolamine transferase RAF_RS02335 IPR006641 YqgF/RNase H-like domain RAF_RS02335 IPR012337 Ribonuclease H-like superfamily RAF_RS02335 IPR037027 YqgF/RNase H-like domain superfamily RAF_RS02335 IPR005227 Putative pre-16S rRNA nuclease RAF_RS02355 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain RAF_RS02355 IPR036291 NAD(P)-binding domain superfamily RAF_RS02355 IPR013692 UDP-glucose 4-epimerase CapD, C-terminal domain RAF_RS02360 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like RAF_RS02360 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain RAF_RS02375 IPR001173 Glycosyltransferase 2-like RAF_RS02375 IPR029044 Nucleotide-diphospho-sugar transferases RAF_RS02380 IPR006143 RND efflux pump, membrane fusion protein RAF_RS02380 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RAF_RS02395 IPR001296 Glycosyl transferase, family 1 RAF_RS02395 IPR000368 Sucrose synthase RAF_RS02395 IPR012820 Sucrose synthase, plant/cyanobacteria RAF_RS02405 IPR005709 Ribosomal protein S4, bacterial-type RAF_RS02405 IPR002942 RNA-binding S4 domain RAF_RS02405 IPR018079 Ribosomal protein S4, conserved site RAF_RS02405 IPR022801 Ribosomal protein S4/S9 RAF_RS02405 IPR036986 RNA-binding S4 domain superfamily RAF_RS02405 IPR001912 Ribosomal protein S4/S9, N-terminal RAF_RS02410 IPR000537 UbiA prenyltransferase family RAF_RS02410 IPR030470 UbiA prenyltransferase conserved site RAF_RS02410 IPR006369 Protohaem IX farnesyltransferase RAF_RS02435 IPR009000 Translation protein, beta-barrel domain superfamily RAF_RS02435 IPR036976 RimM, N-terminal domain superfamily RAF_RS02435 IPR002676 RimM, N-terminal RAF_RS02435 IPR027275 PRC-barrel domain RAF_RS02435 IPR011961 16S rRNA processing protein RimM RAF_RS02435 IPR011033 PRC-barrel-like superfamily RAF_RS02445 IPR037004 Exonuclease VII, small subunit superfamily RAF_RS02445 IPR003761 Exonuclease VII, small subunit RAF_RS02465 IPR036995 Methylpurine-DNA glycosylase superfamily RAF_RS02465 IPR003180 Methylpurine-DNA glycosylase RAF_RS02465 IPR011034 Formyl transferase-like, C-terminal domain superfamily RAF_RS02470 IPR042128 NuoE domain RAF_RS02470 IPR036249 Thioredoxin-like superfamily RAF_RS02470 IPR041921 NADH-quinone oxidoreductase subunit E, N-terminal RAF_RS02470 IPR002023 NADH-quinone oxidoreductase subunit E-like RAF_RS02475 IPR029014 [NiFe]-hydrogenase, large subunit RAF_RS02475 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H RAF_RS02475 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site RAF_RS02475 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily RAF_RS02475 IPR001135 NADH-quinone oxidoreductase, subunit D RAF_RS02480 IPR022436 Rickettsia palindromic element RPE2 RAF_RS02480 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit RAF_RS02480 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily RAF_RS02480 IPR010218 NADH dehydrogenase, subunit C RAF_RS02485 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit RAF_RS02485 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit RAF_RS02490 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid RAF_RS02490 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 RAF_RS02490 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily RAF_RS02495 IPR007016 O-antigen ligase-related RAF_RS02500 IPR019225 Protein of unknown function DUF2155 RAF_RS02520 IPR023009 Tyrosine recombinase XerC/XerD RAF_RS02520 IPR011932 Tyrosine recombinase XerD RAF_RS02520 IPR004107 Integrase, SAM-like, N-terminal RAF_RS02520 IPR010998 Integrase/recombinase, N-terminal RAF_RS02520 IPR002104 Integrase, catalytic domain RAF_RS02520 IPR013762 Integrase-like, catalytic domain superfamily RAF_RS02520 IPR011010 DNA breaking-rejoining enzyme, catalytic core RAF_RS02525 IPR020168 Uncharacterised protein family RP364 RAF_RS02530 IPR020168 Uncharacterised protein family RP364 RAF_RS02540 IPR036526 Carbon-nitrogen hydrolase superfamily RAF_RS02540 IPR003010 Carbon-nitrogen hydrolase RAF_RS02540 IPR004563 Apolipoprotein N-acyltransferase RAF_RS02550 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily RAF_RS02550 IPR036366 PGBD superfamily RAF_RS02550 IPR036365 PGBD-like superfamily RAF_RS02550 IPR002502 N-acetylmuramoyl-L-alanine amidase domain RAF_RS02550 IPR002477 Peptidoglycan binding-like RAF_RS02555 IPR007487 ABC transporter, substrate-binding protein RAF_RS02555 IPR028082 Periplasmic binding protein-like I RAF_RS02560 IPR001851 ABC transporter, permease RAF_RS02565 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02565 IPR003439 ABC transporter-like RAF_RS02565 IPR003593 AAA+ ATPase domain RAF_RS02565 IPR017871 ABC transporter, conserved site RAF_RS02565 IPR015856 ABC transporter, CbiO/EcfA subunit RAF_RS02565 IPR030947 Energy-coupling factor transporter ATP-binding protein EcfA1 RAF_RS02590 IPR023386 Lysine-tRNA ligase, insertion domain superfamily RAF_RS02590 IPR002904 Lysine-tRNA ligase RAF_RS02590 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site RAF_RS02590 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 RAF_RS02590 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding RAF_RS02590 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS02600 IPR012188 NAD(P)-dependent malic enzyme RAF_RS02600 IPR012302 Malic enzyme, NAD-binding RAF_RS02600 IPR002505 Phosphate acetyl/butaryl transferase RAF_RS02600 IPR012301 Malic enzyme, N-terminal domain RAF_RS02600 IPR015884 Malic enzyme, conserved site RAF_RS02600 IPR042112 Phosphate acetyltransferase, domain 2 RAF_RS02600 IPR037062 Malic enzyme, N-terminal domain superfamily RAF_RS02600 IPR042113 Phosphate acetyltransferase, domain 1 RAF_RS02600 IPR036291 NAD(P)-binding domain superfamily RAF_RS02620 IPR005829 Sugar transporter, conserved site RAF_RS02620 IPR036259 MFS transporter superfamily RAF_RS02620 IPR020846 Major facilitator superfamily domain RAF_RS02620 IPR011701 Major facilitator superfamily RAF_RS02660 IPR011275 Malate dehydrogenase, type 3 RAF_RS02660 IPR001236 Lactate/malate dehydrogenase, N-terminal RAF_RS02660 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal RAF_RS02660 IPR001557 L-lactate/malate dehydrogenase RAF_RS02660 IPR036291 NAD(P)-binding domain superfamily RAF_RS02660 IPR022383 Lactate/malate dehydrogenase, C-terminal RAF_RS02675 IPR004667 ADP/ATP carrier protein RAF_RS02680 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02680 IPR033828 CTP synthase GATase domain RAF_RS02680 IPR017926 Glutamine amidotransferase RAF_RS02680 IPR029062 Class I glutamine amidotransferase-like RAF_RS02680 IPR004468 CTP synthase RAF_RS02680 IPR017456 CTP synthase, N-terminal RAF_RS02685 IPR003329 Acylneuraminate cytidylyltransferase RAF_RS02685 IPR029044 Nucleotide-diphospho-sugar transferases RAF_RS02685 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase RAF_RS02705 IPR000883 Cytochrome c oxidase subunit I RAF_RS02705 IPR036927 Cytochrome c oxidase-like, subunit I superfamily RAF_RS02710 IPR001474 GTP cyclohydrolase I RAF_RS02710 IPR018234 GTP cyclohydrolase I, conserved site RAF_RS02710 IPR020602 GTP cyclohydrolase I domain RAF_RS02715 IPR023716 Proline-tRNA ligase, class IIa, type 2 RAF_RS02715 IPR006195 Aminoacyl-tRNA synthetase, class II RAF_RS02715 IPR004154 Anticodon-binding RAF_RS02715 IPR002316 Proline-tRNA ligase, class IIa RAF_RS02715 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type RAF_RS02715 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) RAF_RS02715 IPR033730 Prokaryote proline-tRNA ligase core domain RAF_RS02715 IPR036621 Anticodon-binding domain superfamily RAF_RS02720 IPR041657 Helix-turn-helix domain, group 17 RAF_RS02720 IPR040198 Fido domain-containing protein RAF_RS02720 IPR003812 Fido domain RAF_RS02720 IPR036597 Fido-like domain superfamily RAF_RS02720 IPR010093 SinI-like, DNA-binding domain RAF_RS02730 IPR010994 RuvA domain 2-like RAF_RS02730 IPR012340 Nucleic acid-binding, OB-fold RAF_RS02730 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial RAF_RS02730 IPR000085 Bacterial DNA recombination protein RuvA RAF_RS02730 IPR036267 RuvA, C-terminal domain superfamily RAF_RS02730 IPR011114 Holliday junction DNA helicase RuvA, C-terminal RAF_RS02745 IPR004605 DNA helicase, Holliday junction RuvB-type RAF_RS02745 IPR036390 Winged helix DNA-binding domain superfamily RAF_RS02745 IPR036388 Winged helix-like DNA-binding domain superfamily RAF_RS02745 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02745 IPR008824 RuvB-like P-loop domain RAF_RS02745 IPR041445 RuvB, AAA lid domain RAF_RS02745 IPR003593 AAA+ ATPase domain RAF_RS02745 IPR008823 RuvB C-terminal winged helix domain RAF_RS02750 IPR003593 AAA+ ATPase domain RAF_RS02750 IPR036640 ABC transporter type 1, transmembrane domain superfamily RAF_RS02750 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02750 IPR011527 ABC transporter type 1, transmembrane domain RAF_RS02750 IPR017871 ABC transporter, conserved site RAF_RS02750 IPR011917 ABC transporter, lipid A export, MsbA RAF_RS02750 IPR039421 Type I protein exporter RAF_RS02750 IPR003439 ABC transporter-like RAF_RS02755 IPR036259 MFS transporter superfamily RAF_RS02755 IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1 RAF_RS02755 IPR020846 Major facilitator superfamily domain RAF_RS02755 IPR011701 Major facilitator superfamily RAF_RS02760 IPR012338 Beta-lactamase/transpeptidase-like RAF_RS02760 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal RAF_RS02760 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A RAF_RS02760 IPR015956 Penicillin-binding protein, C-terminal domain superfamily RAF_RS02760 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily RAF_RS02760 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal RAF_RS02765 IPR005728 Rickettsial palindromic element RAF_RS02765 IPR022438 Rickettsia palindromic element RPE5 RAF_RS02765 IPR012997 Rare lipoprotein A RAF_RS02765 IPR034718 Endolytic peptidoglycan transglycosylase RlpA RAF_RS02765 IPR036908 RlpA-like domain superfamily RAF_RS02765 IPR009009 RlpA-like protein, double-psi beta-barrel domain RAF_RS02770 IPR007055 BON domain RAF_RS02770 IPR014004 Transport-associated and nodulation domain, bacteria RAF_RS02775 IPR006008 Intracellular septation protein A RAF_RS02785 IPR008972 Cupredoxin RAF_RS02785 IPR028096 EfeO-type cupredoxin-like domain RAF_RS02790 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain RAF_RS02795 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal RAF_RS02795 IPR015889 Intradiol ring-cleavage dioxygenase, core RAF_RS02800 IPR023555 Thiol-disulphide oxidoreductase ResA RAF_RS02800 IPR036249 Thioredoxin-like superfamily RAF_RS02800 IPR013766 Thioredoxin domain RAF_RS02800 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant RAF_RS02805 IPR002142 Peptidase S49 RAF_RS02805 IPR004670 Na+/H+ antiporter NhaA RAF_RS02805 IPR029045 ClpP/crotonase-like domain superfamily RAF_RS02805 IPR023171 Na/H antiporter domain superfamily RAF_RS02810 IPR036157 dUTPase-like superfamily RAF_RS02810 IPR029054 dUTPase-like RAF_RS02810 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase RAF_RS02810 IPR033704 dUTPase, trimeric RAF_RS02815 IPR008258 Transglycosylase SLT domain 1 RAF_RS02815 IPR024570 Murein transglycosylase-C, N-terminal RAF_RS02815 IPR000189 Prokaryotic transglycosylase, active site RAF_RS02815 IPR023346 Lysozyme-like domain superfamily RAF_RS02815 IPR023664 Murein transglycosylase-C RAF_RS02825 IPR003507 Peptidase family S66 RAF_RS02825 IPR040449 LD-carboxypeptidase, N-terminal RAF_RS02825 IPR029062 Class I glutamine amidotransferase-like RAF_RS02825 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily RAF_RS02825 IPR040921 LD-carboxypeptidase, C-terminal RAF_RS02825 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal RAF_RS02830 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type RAF_RS02830 IPR011335 Restriction endonuclease type II-like RAF_RS02830 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02830 IPR022439 Rickettsia palindromic element RPE4 RAF_RS02840 IPR029062 Class I glutamine amidotransferase-like RAF_RS02840 IPR017926 Glutamine amidotransferase RAF_RS02840 IPR011697 Peptidase C26 RAF_RS02845 IPR023616 Cytochrome c oxidase-like, subunit I domain RAF_RS02845 IPR014241 Cytochrome c oxidase, subunit I bacterial type RAF_RS02845 IPR036927 Cytochrome c oxidase-like, subunit I superfamily RAF_RS02845 IPR000883 Cytochrome c oxidase subunit I RAF_RS02845 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site RAF_RS02845 IPR033944 Cytochrome c oxidase subunit I domain RAF_RS02855 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily RAF_RS02855 IPR002429 Cytochrome c oxidase subunit II-like C-terminal RAF_RS02855 IPR034210 Cytochrome c oxidase subunit 2, C-terminal RAF_RS02855 IPR001505 Copper centre Cu(A) RAF_RS02855 IPR008972 Cupredoxin RAF_RS02855 IPR005728 Rickettsial palindromic element RAF_RS02855 IPR014222 Cytochrome c oxidase, subunit II RAF_RS02855 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain RAF_RS02865 IPR016047 Peptidase M23 RAF_RS02865 IPR007340 Opacity-associated protein A RAF_RS02865 IPR011055 Duplicated hybrid motif RAF_RS02870 IPR001872 Peptidase A8, signal peptidase II RAF_RS02880 IPR013221 Mur ligase, central RAF_RS02880 IPR018109 Folylpolyglutamate synthetase, conserved site RAF_RS02880 IPR036565 Mur-like, catalytic domain superfamily RAF_RS02880 IPR022437 Rickettsia palindromic element RPE3 RAF_RS02880 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase RAF_RS02880 IPR036615 Mur ligase, C-terminal domain superfamily RAF_RS02885 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA RAF_RS02885 IPR013437 Probable peptidoglycan glycosyltransferase FtsW RAF_RS02890 IPR022439 Rickettsia palindromic element RPE4 RAF_RS02890 IPR006009 N-acetylglucosaminyltransferase, MurG RAF_RS02890 IPR007235 Glycosyl transferase, family 28, C-terminal RAF_RS02890 IPR004276 Glycosyltransferase family 28, N-terminal domain RAF_RS02895 IPR005728 Rickettsial palindromic element RAF_RS02895 IPR039901 3-deoxy-D-manno-octulosonic acid transferase RAF_RS02895 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily RAF_RS02895 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal RAF_RS02920 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RAF_RS02920 IPR022831 Multidrug resistance protein MdtB RAF_RS02920 IPR001036 Acriflavin resistance protein RAF_RS02925 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RAF_RS02925 IPR001036 Acriflavin resistance protein RAF_RS02925 IPR022831 Multidrug resistance protein MdtB RAF_RS02935 IPR023931 Multidrug resistance protein MdtC RAF_RS02935 IPR001036 Acriflavin resistance protein RAF_RS02935 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RAF_RS02955 IPR010131 RND efflux system, outer membrane lipoprotein, NodT RAF_RS02955 IPR003423 Outer membrane efflux protein RAF_RS02965 IPR001296 Glycosyl transferase, family 1 RAF_RS02985 IPR018510 Diaminopimelate epimerase, active site RAF_RS02985 IPR001653 Diaminopimelate epimerase, DapF RAF_RS02990 IPR006638 Elp3/MiaB/NifB RAF_RS02990 IPR007197 Radical SAM RAF_RS02990 IPR006467 MiaB-like tRNA modifying enzyme RAF_RS02990 IPR038135 Methylthiotransferase, N-terminal domain superfamily RAF_RS02990 IPR013848 Methylthiotransferase, N-terminal RAF_RS02990 IPR020612 Methylthiotransferase, conserved site RAF_RS02990 IPR005839 Methylthiotransferase RAF_RS02990 IPR023404 Radical SAM, alpha/beta horseshoe RAF_RS02995 IPR006195 Aminoacyl-tRNA synthetase, class II RAF_RS02995 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial RAF_RS02995 IPR002319 Phenylalanyl-tRNA synthetase RAF_RS02995 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm RAF_RS02995 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit RAF_RS02995 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal RAF_RS03000 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily RAF_RS03000 IPR012340 Nucleic acid-binding, OB-fold RAF_RS03000 IPR009061 Putative DNA-binding domain superfamily RAF_RS03000 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit RAF_RS03000 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 RAF_RS03000 IPR041616 Phenylalanyl tRNA synthetase beta chain, core domain RAF_RS03000 IPR002547 tRNA-binding domain RAF_RS03000 IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain RAF_RS03000 IPR005147 tRNA synthetase, B5-domain RAF_RS03000 IPR005121 Ferrodoxin-fold anticodon-binding domain RAF_RS03000 IPR005146 B3/B4 tRNA-binding domain RAF_RS03005 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal RAF_RS03005 IPR022637 DNA polymerase III, beta sliding clamp, central RAF_RS03005 IPR001001 DNA polymerase III, beta sliding clamp RAF_RS03005 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal RAF_RS03015 IPR021959 Protein of unknown function DUF3576 RAF_RS03020 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain RAF_RS03020 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding RAF_RS03020 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS03020 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding RAF_RS03020 IPR025709 Leucyl-tRNA synthetase, editing domain RAF_RS03020 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site RAF_RS03020 IPR002302 Leucine-tRNA ligase RAF_RS03020 IPR002300 Aminoacyl-tRNA synthetase, class Ia RAF_RS03025 IPR002562 3'-5' exonuclease domain RAF_RS03025 IPR010997 HRDC-like superfamily RAF_RS03025 IPR002121 HRDC domain RAF_RS03025 IPR006292 Ribonuclease D RAF_RS03025 IPR012337 Ribonuclease H-like superfamily RAF_RS03025 IPR036397 Ribonuclease H superfamily RAF_RS03030 IPR007060 Septum formation initiator FtsL/DivIC RAF_RS03035 IPR000374 Phosphatidate cytidylyltransferase RAF_RS03040 IPR036424 Decaprenyl diphosphate synthase-like superfamily RAF_RS03040 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site RAF_RS03040 IPR001441 Decaprenyl diphosphate synthase-like RAF_RS03045 IPR003594 Histidine kinase/HSP90-like ATPase RAF_RS03045 IPR005467 Histidine kinase domain RAF_RS03045 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain RAF_RS03045 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily RAF_RS03045 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RAF_RS03045 IPR003660 HAMP domain RAF_RS03045 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAF_RS03050 IPR011006 CheY-like superfamily RAF_RS03050 IPR036388 Winged helix-like DNA-binding domain superfamily RAF_RS03050 IPR039420 Transcriptional regulatory protein WalR-like RAF_RS03050 IPR001789 Signal transduction response regulator, receiver domain RAF_RS03050 IPR016032 Signal transduction response regulator, C-terminal effector RAF_RS03050 IPR001867 OmpR/PhoB-type DNA-binding domain RAF_RS03055 IPR005785 Branched-chain amino acid aminotransferase I RAF_RS03055 IPR036038 Aminotransferase-like, PLP-dependent enzymes RAF_RS03055 IPR018300 Aminotransferase, class IV, conserved site RAF_RS03055 IPR001544 Aminotransferase class IV RAF_RS03060 IPR013785 Aldolase-type TIM barrel RAF_RS03060 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA RAF_RS03060 IPR020624 Schiff base-forming aldolase, conserved site RAF_RS03060 IPR020625 Schiff base-forming aldolase, active site RAF_RS03060 IPR002220 DapA-like RAF_RS03065 IPR000037 SsrA-binding protein RAF_RS03065 IPR023620 Small protein B RAF_RS03075 IPR036291 NAD(P)-binding domain superfamily RAF_RS03075 IPR005811 ATP-citrate lyase/succinyl-CoA ligase RAF_RS03075 IPR005810 Succinyl-CoA ligase, alpha subunit RAF_RS03075 IPR003781 CoA-binding RAF_RS03075 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site RAF_RS03075 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site RAF_RS03075 IPR016102 Succinyl-CoA synthetase-like RAF_RS03080 IPR016102 Succinyl-CoA synthetase-like RAF_RS03080 IPR011761 ATP-grasp fold RAF_RS03080 IPR005809 Succinate--CoA synthetase, beta subunit RAF_RS03080 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site RAF_RS03080 IPR013815 ATP-grasp fold, subdomain 1 RAF_RS03080 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type RAF_RS03080 IPR005811 ATP-citrate lyase/succinyl-CoA ligase RAF_RS03105 IPR011042 Six-bladed beta-propeller, TolB-like RAF_RS03105 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain RAF_RS03105 IPR029058 Alpha/Beta hydrolase fold RAF_RS03110 IPR007379 Tim44-like domain RAF_RS03110 IPR032710 NTF2-like domain superfamily RAF_RS03125 IPR015946 K homology domain-like, alpha/beta RAF_RS03125 IPR000238 Ribosome-binding factor A RAF_RS03125 IPR023799 Ribosome-binding factor A domain superfamily RAF_RS03125 IPR020053 Ribosome-binding factor A, conserved site RAF_RS03135 IPR010432 RDD RAF_RS03140 IPR015967 Recombination protein RecR, conserved site RAF_RS03140 IPR023628 Recombination protein RecR, C4-type zinc finger RAF_RS03140 IPR023627 Recombination protein RecR RAF_RS03140 IPR000093 DNA recombination protein RecR RAF_RS03140 IPR006171 TOPRIM domain RAF_RS03140 IPR034137 RecR, TOPRIM domain RAF_RS03145 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily RAF_RS03145 IPR002504 NAD kinase RAF_RS03145 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal RAF_RS03145 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal RAF_RS03150 IPR041636 Ribonuclease J, C-terminal RAF_RS03150 IPR030854 Ribonuclease J, bacteria RAF_RS03150 IPR042173 Ribonuclease J, domain 2 RAF_RS03150 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain RAF_RS03150 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAF_RS03150 IPR001279 Metallo-beta-lactamase RAF_RS03155 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal RAF_RS03155 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal RAF_RS03155 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent RAF_RS03155 IPR013328 6-phosphogluconate dehydrogenase, domain 2 RAF_RS03155 IPR036291 NAD(P)-binding domain superfamily RAF_RS03155 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily RAF_RS03165 IPR000073 Alpha/beta hydrolase fold-1 RAF_RS03165 IPR029058 Alpha/Beta hydrolase fold RAF_RS03170 IPR023753 FAD/NAD(P)-binding domain RAF_RS03170 IPR036188 FAD/NAD(P)-binding domain superfamily RAF_RS03170 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site RAF_RS03170 IPR005982 Thioredoxin reductase RAF_RS03190 IPR029510 Aldehyde dehydrogenase, glutamic acid active site RAF_RS03190 IPR016161 Aldehyde/histidinol dehydrogenase RAF_RS03190 IPR016163 Aldehyde dehydrogenase, C-terminal RAF_RS03190 IPR016162 Aldehyde dehydrogenase, N-terminal RAF_RS03190 IPR016160 Aldehyde dehydrogenase, cysteine active site RAF_RS03190 IPR010102 Succinate semialdehyde dehydrogenase RAF_RS03190 IPR015590 Aldehyde dehydrogenase domain RAF_RS03200 IPR029044 Nucleotide-diphospho-sugar transferases RAF_RS03200 IPR001173 Glycosyltransferase 2-like RAF_RS03205 IPR014016 UvrD-like helicase, ATP-binding domain RAF_RS03205 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS03205 IPR014017 UvrD-like DNA helicase, C-terminal RAF_RS03205 IPR013986 DExx box DNA helicase domain superfamily RAF_RS03205 IPR005751 ATP-dependent DNA helicase PcrA RAF_RS03205 IPR034739 UvrD/AddA helicase, N-terminal RAF_RS03205 IPR000212 DNA helicase, UvrD/REP type RAF_RS03220 IPR001926 Pyridoxal-phosphate dependent enzyme RAF_RS03220 IPR011820 L-threonine dehydratase biosynthetic IlvA RAF_RS03220 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site RAF_RS03220 IPR001721 Threonine dehydratase, ACT-like domain RAF_RS03220 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RAF_RS03225 IPR008268 Peptidase S16, active site RAF_RS03225 IPR004815 Lon protease, bacterial/eukaryotic-type RAF_RS03225 IPR008269 Peptidase S16, Lon proteolytic domain RAF_RS03225 IPR027065 Lon protease RAF_RS03225 IPR003111 Lon, substrate-binding domain RAF_RS03225 IPR003959 ATPase, AAA-type, core RAF_RS03225 IPR027543 Lon protease, bacterial RAF_RS03225 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS03225 IPR003593 AAA+ ATPase domain RAF_RS03225 IPR015947 PUA-like superfamily RAF_RS03225 IPR020568 Ribosomal protein S5 domain 2-type fold RAF_RS03225 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAF_RS03255 IPR003489 Ribosome hibernation promoting factor/RaiA RAF_RS03255 IPR032528 Sigma 54 modulation/S30EA ribosomal protein, C-terminal RAF_RS03255 IPR038416 Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamily RAF_RS03255 IPR034694 Ribosome hibernation promoting factor, long/plastid RAF_RS03255 IPR036567 Ribosome hibernation promotion factor-like RAF_RS03260 IPR011004 Trimeric LpxA-like superfamily RAF_RS03260 IPR036385 Ribulose bisphosphate carboxylase, small subunit superfamily RAF_RS03260 IPR017156 Carbon dioxide concentrating mechanism protein, CcmM RAF_RS03260 IPR001451 Hexapeptide repeat RAF_RS03260 IPR000894 Ribulose bisphosphate carboxylase small chain, domain RAF_RS03265 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RAF_RS03265 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site RAF_RS03265 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RAF_RS03265 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase RAF_RS03265 IPR036291 NAD(P)-binding domain superfamily RAF_RS03270 IPR036188 FAD/NAD(P)-binding domain superfamily RAF_RS03270 IPR023753 FAD/NAD(P)-binding domain RAF_RS03270 IPR022890 Ferredoxin--NADP reductase, type 2 RAF_RS03315 IPR005144 ATP-cone domain RAF_RS03315 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal RAF_RS03315 IPR000788 Ribonucleotide reductase large subunit, C-terminal RAF_RS03315 IPR013509 Ribonucleotide reductase large subunit, N-terminal RAF_RS03315 IPR013346 Ribonucleotide reductase, class I , alpha subunit RAF_RS03315 IPR039718 Ribonucleoside-diphosphate reductase large subunit RAF_RS03330 IPR012348 Ribonucleotide reductase-like RAF_RS03330 IPR026494 Ribonucleoside reductase subunit beta, NrdF RAF_RS03330 IPR033909 Ribonucleotide reductase small subunit RAF_RS03330 IPR009078 Ferritin-like superfamily RAF_RS03330 IPR000358 Ribonucleotide reductase small subunit family RAF_RS03330 IPR030475 Ribonucleotide reductase small subunit, acitve site RAF_RS03335 IPR001646 Pentapeptide repeat RAF_RS03340 IPR001646 Pentapeptide repeat RAF_RS03345 IPR001646 Pentapeptide repeat RAF_RS03350 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS03350 IPR018022 IPP transferase RAF_RS03350 IPR039657 Dimethylallyltransferase RAF_RS03355 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily RAF_RS03355 IPR005843 Alpha-D-phosphohexomutase, C-terminal RAF_RS03355 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III RAF_RS03355 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II RAF_RS03355 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III RAF_RS03355 IPR005841 Alpha-D-phosphohexomutase superfamily RAF_RS03355 IPR016066 Alpha-D-phosphohexomutase, conserved site RAF_RS03355 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I RAF_RS03360 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS03360 IPR003439 ABC transporter-like RAF_RS03360 IPR003593 AAA+ ATPase domain RAF_RS03360 IPR017871 ABC transporter, conserved site RAF_RS03360 IPR030921 LPS export ABC transporter, ATP-binding protein LptB RAF_RS03365 IPR005653 Organic solvent tolerance-like, N-terminal RAF_RS03370 IPR010664 Lipopolysaccharide assembly, LptC-related RAF_RS03375 IPR001347 Sugar isomerase (SIS) RAF_RS03375 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type RAF_RS03375 IPR000644 CBS domain RAF_RS03375 IPR035474 KpsF-like, SIS domain RAF_RS03380 IPR004087 K Homology domain RAF_RS03380 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain RAF_RS03380 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily RAF_RS03380 IPR020568 Ribosomal protein S5 domain 2-type fold RAF_RS03380 IPR004088 K Homology domain, type 1 RAF_RS03380 IPR022967 RNA-binding domain, S1 RAF_RS03380 IPR003029 S1 domain RAF_RS03380 IPR027408 PNPase/RNase PH domain superfamily RAF_RS03380 IPR012162 Polyribonucleotide nucleotidyltransferase RAF_RS03380 IPR012340 Nucleic acid-binding, OB-fold RAF_RS03380 IPR015847 Exoribonuclease, phosphorolytic domain 2 RAF_RS03380 IPR001247 Exoribonuclease, phosphorolytic domain 1 RAF_RS03380 IPR036612 K Homology domain, type 1 superfamily RAF_RS03380 IPR036345 Exoribonuclease, PH domain 2 superfamily RAF_RS03385 IPR009068 S15/NS1, RNA-binding RAF_RS03385 IPR005290 Ribosomal protein S15, bacterial-type RAF_RS03385 IPR000589 Ribosomal protein S15 RAF_RS03390 IPR002501 Pseudouridine synthase II, N-terminal RAF_RS03390 IPR005728 Rickettsial palindromic element RAF_RS03390 IPR014780 tRNA pseudouridine synthase II, TruB RAF_RS03390 IPR032819 tRNA pseudouridylate synthase B, C-terminal RAF_RS03390 IPR020103 Pseudouridine synthase, catalytic domain superfamily RAF_RS03395 IPR004667 ADP/ATP carrier protein RAF_RS03400 IPR020954 Rickettsia surface antigen, 120kDa RAF_RS03405 IPR010982 Lambda repressor-like, DNA-binding domain superfamily RAF_RS03405 IPR001387 Cro/C1-type helix-turn-helix domain RAF_RS03410 IPR017039 Virulence factor BrkB RAF_RS03420 IPR003730 Multi-copper polyphenol oxidoreductase RAF_RS03420 IPR038371 Multi-copper polyphenol oxidoreductase superfamily RAF_RS03420 IPR011324 Cytotoxic necrotizing factor-like, catalytic RAF_RS03425 IPR036821 Peptide deformylase superfamily RAF_RS03425 IPR023635 Peptide deformylase RAF_RS03440 IPR036409 Class II aldolase/adducin N-terminal domain superfamily RAF_RS03440 IPR001303 Class II aldolase/adducin N-terminal RAF_RS03450 IPR023151 PEP-utilising enzyme, conserved site RAF_RS03450 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding RAF_RS03450 IPR010121 Pyruvate, phosphate dikinase RAF_RS03450 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily RAF_RS03450 IPR008279 PEP-utilising enzyme, mobile domain RAF_RS03450 IPR040442 Pyruvate kinase-like domain superfamily RAF_RS03450 IPR036637 Phosphohistidine domain superfamily RAF_RS03450 IPR000121 PEP-utilising enzyme, C-terminal RAF_RS03450 IPR018274 PEP-utilising enzyme, active site RAF_RS03450 IPR013815 ATP-grasp fold, subdomain 1 RAF_RS03460 IPR029062 Class I glutamine amidotransferase-like RAF_RS03460 IPR015834 Uncharacterised conserved protein UCP016642 RAF_RS03460 IPR019197 Biotin-protein ligase, N-terminal RAF_RS03465 IPR003784 BioY protein RAF_RS03470 IPR036615 Mur ligase, C-terminal domain superfamily RAF_RS03470 IPR004101 Mur ligase, C-terminal RAF_RS03470 IPR036565 Mur-like, catalytic domain superfamily RAF_RS03470 IPR018109 Folylpolyglutamate synthetase, conserved site RAF_RS03470 IPR001645 Folylpolyglutamate synthetase RAF_RS03470 IPR013221 Mur ligase, central RAF_RS03480 IPR019833 Manganese/iron superoxide dismutase, binding site RAF_RS03480 IPR019832 Manganese/iron superoxide dismutase, C-terminal RAF_RS03480 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily RAF_RS03480 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily RAF_RS03480 IPR019831 Manganese/iron superoxide dismutase, N-terminal RAF_RS03480 IPR001189 Manganese/iron superoxide dismutase RAF_RS03495 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain RAF_RS03495 IPR003142 Biotin protein ligase, C-terminal RAF_RS03495 IPR004408 Biotin--acetyl-CoA-carboxylase ligase RAF_RS03515 IPR019284 Xylella phage Xfas53, Orf42 RAF_RS03520 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily RAF_RS03520 IPR019813 Translation initiation factor 3, conserved site RAF_RS03520 IPR019815 Translation initiation factor 3, C-terminal RAF_RS03520 IPR001288 Translation initiation factor 3 RAF_RS03520 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily RAF_RS03520 IPR019814 Translation initiation factor 3, N-terminal RAF_RS03525 IPR004167 Peripheral subunit-binding domain RAF_RS03525 IPR011053 Single hybrid motif RAF_RS03525 IPR036625 E3-binding domain superfamily RAF_RS03525 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site RAF_RS03525 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily RAF_RS03525 IPR000089 Biotin/lipoyl attachment RAF_RS03525 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain RAF_RS03525 IPR006257 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex RAF_RS03530 IPR005139 Peptide chain release factor RAF_RS03530 IPR004373 Peptide chain release factor 1 RAF_RS03530 IPR000352 Peptide chain release factor class I RAF_RS03540 IPR041122 RecJ, OB domain RAF_RS03540 IPR001667 DDH domain RAF_RS03540 IPR038763 DHH phosphoesterase superfamily RAF_RS03540 IPR003156 DHHA1 domain RAF_RS03540 IPR004610 Bacterial RecJ exonuclease RAF_RS03545 IPR025714 Methyltransferase domain RAF_RS03545 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS03550 IPR003593 AAA+ ATPase domain RAF_RS03550 IPR011112 Rho termination factor, N-terminal RAF_RS03550 IPR041703 Transcription termination factor Rho, ATP binding domain RAF_RS03550 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS03550 IPR012340 Nucleic acid-binding, OB-fold RAF_RS03550 IPR011129 Cold shock domain RAF_RS03550 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain RAF_RS03550 IPR011113 Rho termination factor, RNA-binding domain RAF_RS03550 IPR036269 Rho termination factor, N-terminal domain superfamily RAF_RS03550 IPR004665 Transcription termination factor Rho RAF_RS03555 IPR004635 Peptidase S49, SppA RAF_RS03555 IPR029045 ClpP/crotonase-like domain superfamily RAF_RS03555 IPR002142 Peptidase S49 RAF_RS03560 IPR000119 Histone-like DNA-binding protein RAF_RS03560 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily RAF_RS03575 IPR005583 Peroxide stress protein YaaA RAF_RS03595 IPR022585 TraD coupling protein, N-terminal RAF_RS03595 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS03595 IPR014128 Type IV conjugative transfer system, coupling protein TraD RAF_RS03595 IPR019476 Type IV secretion system coupling protein TraD, DNA-binding domain RAF_RS03605 IPR002110 Ankyrin repeat RAF_RS03605 IPR020683 Ankyrin repeat-containing domain RAF_RS03605 IPR036770 Ankyrin repeat-containing domain superfamily RAF_RS03605 IPR007685 RelA/SpoT RAF_RS03610 IPR020683 Ankyrin repeat-containing domain RAF_RS03610 IPR002110 Ankyrin repeat RAF_RS03610 IPR036770 Ankyrin repeat-containing domain superfamily RAF_RS03610 IPR007685 RelA/SpoT RAF_RS03625 IPR012327 D12 class N6 adenine-specific DNA methyltransferase RAF_RS03625 IPR002052 DNA methylase, N-6 adenine-specific, conserved site RAF_RS03625 IPR023095 Adenine-specific methyltransferase, domain 2 RAF_RS03625 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS03625 IPR012263 Adenine modification methylase, M.EcoRV-type RAF_RS03640 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS03640 IPR003136 Cytidylate kinase RAF_RS03640 IPR011994 Cytidylate kinase domain RAF_RS03645 IPR012340 Nucleic acid-binding, OB-fold RAF_RS03645 IPR000110 Ribosomal protein S1 RAF_RS03645 IPR003029 S1 domain RAF_RS03645 IPR022967 RNA-binding domain, S1 RAF_RS03650 IPR033135 ClpP, histidine active site RAF_RS03650 IPR029045 ClpP/crotonase-like domain superfamily RAF_RS03650 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA RAF_RS03650 IPR001907 ATP-dependent Clp protease proteolytic subunit RAF_RS03650 IPR018215 ClpP, Ser active site RAF_RS03665 IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent RAF_RS03665 IPR000262 FMN-dependent dehydrogenase RAF_RS03665 IPR013785 Aldolase-type TIM barrel RAF_RS03685 IPR041527 YhcG, N-terminal RAF_RS03685 IPR009362 YhcG PDDEXK nuclease domain RAF_RS03705 IPR009574 Protein of unknown function DUF1189 RAF_RS03725 IPR036390 Winged helix DNA-binding domain superfamily RAF_RS03725 IPR036388 Winged helix-like DNA-binding domain superfamily RAF_RS03725 IPR000944 Transcription regulator Rrf2-type RAF_RS03725 IPR030489 Transcription regulator Rrf2-type, conserved site RAF_RS03725 IPR010242 Transcription factor HTH, IscR RAF_RS03730 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RAF_RS03730 IPR016454 Cysteine desulfurase RAF_RS03730 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site RAF_RS03730 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RAF_RS03730 IPR000192 Aminotransferase class V domain RAF_RS03730 IPR015424 Pyridoxal phosphate-dependent transferase RAF_RS03730 IPR017772 Cysteine desulfurase NifS, bacterial/archaeal RAF_RS03735 IPR000192 Aminotransferase class V domain RAF_RS03735 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site RAF_RS03735 IPR010240 Cysteine desulfurase IscS RAF_RS03735 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RAF_RS03735 IPR015424 Pyridoxal phosphate-dependent transferase RAF_RS03735 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RAF_RS03735 IPR016454 Cysteine desulfurase RAF_RS03740 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal RAF_RS03740 IPR011339 ISC system FeS cluster assembly, IscU scaffold RAF_RS03745 IPR000361 FeS cluster biogenesis RAF_RS03745 IPR035903 HesB-like domain superfamily RAF_RS03745 IPR016092 FeS cluster insertion protein RAF_RS03745 IPR017870 FeS cluster insertion, C-terminal, conserved site RAF_RS03760 IPR002293 Amino acid/polyamine transporter I RAF_RS03765 IPR036005 Creatinase/aminopeptidase-like RAF_RS03765 IPR000587 Creatinase, N-terminal RAF_RS03765 IPR000994 Peptidase M24 RAF_RS03765 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site RAF_RS03765 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RAF_RS03780 IPR033749 Polyprenyl synthetase, conserved site RAF_RS03780 IPR000092 Polyprenyl synthetase RAF_RS03780 IPR008949 Isoprenoid synthase domain superfamily RAF_RS03790 IPR004667 ADP/ATP carrier protein RAF_RS03810 IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1 RAF_RS03810 IPR011701 Major facilitator superfamily RAF_RS03810 IPR020846 Major facilitator superfamily domain RAF_RS03810 IPR036259 MFS transporter superfamily RAF_RS03820 IPR001123 Amino acid exporter protein, LeuE-type RAF_RS03825 IPR005728 Rickettsial palindromic element RAF_RS03825 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily RAF_RS03835 IPR011990 Tetratricopeptide-like helical domain superfamily RAF_RS03835 IPR010817 HemY, N-terminal RAF_RS03840 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain RAF_RS03840 IPR029058 Alpha/Beta hydrolase fold RAF_RS03855 IPR019291 Host attachment protein RAF_RS03865 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS03865 IPR024109 Tryptophan-tRNA ligase, bacterial-type RAF_RS03865 IPR002305 Aminoacyl-tRNA synthetase, class Ic RAF_RS03865 IPR002306 Tryptophan-tRNA ligase RAF_RS03885 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily RAF_RS03885 IPR022418 Porphobilinogen deaminase, C-terminal RAF_RS03885 IPR022417 Porphobilinogen deaminase, N-terminal RAF_RS03885 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site RAF_RS03885 IPR000860 Porphobilinogen deaminase RAF_RS03885 IPR005728 Rickettsial palindromic element RAF_RS03890 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal RAF_RS03890 IPR040449 LD-carboxypeptidase, N-terminal RAF_RS03890 IPR029062 Class I glutamine amidotransferase-like RAF_RS03890 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily RAF_RS03890 IPR003507 Peptidase family S66 RAF_RS03890 IPR040921 LD-carboxypeptidase, C-terminal RAF_RS03900 IPR036770 Ankyrin repeat-containing domain superfamily RAF_RS03900 IPR002110 Ankyrin repeat RAF_RS03900 IPR020683 Ankyrin repeat-containing domain RAF_RS03915 IPR017703 YgfZ/GcvT conserved site RAF_RS03915 IPR023758 tRNA-modifying protein YgfZ RAF_RS03915 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal RAF_RS03915 IPR006222 Aminomethyltransferase, folate-binding domain RAF_RS03925 IPR002121 HRDC domain RAF_RS03925 IPR006292 Ribonuclease D RAF_RS03925 IPR010997 HRDC-like superfamily RAF_RS03925 IPR002562 3'-5' exonuclease domain RAF_RS03925 IPR012337 Ribonuclease H-like superfamily RAF_RS03925 IPR036397 Ribonuclease H superfamily RAF_RS03935 IPR002698 5-formyltetrahydrofolate cyclo-ligase RAF_RS03935 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily RAF_RS03935 IPR037171 NagB/RpiA transferase-like RAF_RS03940 IPR006258 Dihydrolipoamide dehydrogenase RAF_RS03940 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily RAF_RS03940 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RAF_RS03940 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I RAF_RS03940 IPR023753 FAD/NAD(P)-binding domain RAF_RS03940 IPR036188 FAD/NAD(P)-binding domain superfamily RAF_RS03940 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site RAF_RS03945 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS03945 IPR013216 Methyltransferase type 11 RAF_RS03955 IPR002052 DNA methylase, N-6 adenine-specific, conserved site RAF_RS03955 IPR023095 Adenine-specific methyltransferase, domain 2 RAF_RS03955 IPR012327 D12 class N6 adenine-specific DNA methyltransferase RAF_RS03955 IPR012263 Adenine modification methylase, M.EcoRV-type RAF_RS03955 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS03970 IPR024386 Protein of unknown function DUF2532 RAF_RS03990 IPR000473 Ribosomal protein L36 RAF_RS03990 IPR035977 Ribosomal protein L36 superfamily RAF_RS03995 IPR026564 Transcriptional regulator TACO1-like, domain 3 RAF_RS03995 IPR002876 Transcriptional regulator TACO1-like RAF_RS03995 IPR029072 YebC-like RAF_RS03995 IPR017856 Integrase-like, N-terminal RAF_RS04000 IPR011004 Trimeric LpxA-like superfamily RAF_RS04000 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase RAF_RS04000 IPR038009 GlmU, C-terminal LbH domain RAF_RS04000 IPR001451 Hexapeptide repeat RAF_RS04000 IPR025877 MobA-like NTP transferase RAF_RS04000 IPR029044 Nucleotide-diphospho-sugar transferases RAF_RS04060 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 RAF_RS04060 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit RAF_RS04065 IPR040519 LepB, N-terminal RAF_RS04070 IPR030656 Delta-aminolevulinic acid dehydratase, active site RAF_RS04070 IPR013785 Aldolase-type TIM barrel RAF_RS04070 IPR001731 Delta-aminolevulinic acid dehydratase RAF_RS04075 IPR002110 Ankyrin repeat RAF_RS04075 IPR020683 Ankyrin repeat-containing domain RAF_RS04075 IPR036770 Ankyrin repeat-containing domain superfamily RAF_RS04090 IPR011545 DEAD/DEAH box helicase domain RAF_RS04090 IPR014001 Helicase superfamily 1/2, ATP-binding domain RAF_RS04090 IPR040498 PriA DNA helicase, Cys-rich region (CRR) domain RAF_RS04090 IPR041236 Primosomal protein N, C-terminal domain RAF_RS04090 IPR041222 Primosomal protein N', 3' DNA-binding domain RAF_RS04090 IPR042115 Primosomal protein N', 3' DNA-binding domain superfamily RAF_RS04090 IPR005259 Primosomal protein N' RAF_RS04090 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04090 IPR001650 Helicase, C-terminal RAF_RS04095 IPR003382 Flavoprotein RAF_RS04095 IPR004507 Flavin prenyltransferase UbiX-like RAF_RS04095 IPR036551 Flavin prenyltransferase-like RAF_RS04100 IPR007692 DNA helicase, DnaB type RAF_RS04100 IPR007694 DNA helicase, DnaB-like, C-terminal RAF_RS04100 IPR007693 DNA helicase, DnaB-like, N-terminal RAF_RS04100 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily RAF_RS04100 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04100 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal RAF_RS04115 IPR018227 Amino acid/polyamine transporter 2 RAF_RS04115 IPR013059 Tryptophan/tyrosine transporter RAF_RS04120 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site RAF_RS04120 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F RAF_RS04120 IPR036986 RNA-binding S4 domain superfamily RAF_RS04120 IPR002942 RNA-binding S4 domain RAF_RS04120 IPR006145 Pseudouridine synthase, RsuA/RluA RAF_RS04120 IPR020103 Pseudouridine synthase, catalytic domain superfamily RAF_RS04120 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain RAF_RS04130 IPR002052 DNA methylase, N-6 adenine-specific, conserved site RAF_RS04130 IPR005728 Rickettsial palindromic element RAF_RS04130 IPR004398 RNA methyltransferase, RsmD RAF_RS04130 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS04135 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04135 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain RAF_RS04135 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAF_RS04135 IPR041166 LapB, rubredoxin metal binding domain RAF_RS04135 IPR003593 AAA+ ATPase domain RAF_RS04135 IPR004504 DNA repair protein RadA RAF_RS04135 IPR020568 Ribosomal protein S5 domain 2-type fold RAF_RS04145 IPR037278 ARFGAP/RecO-like zinc finger RAF_RS04145 IPR022572 DNA replication/recombination mediator RecO, N-terminal RAF_RS04145 IPR003717 Recombination protein O, RecO RAF_RS04155 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB RAF_RS04155 IPR000905 Gcp-like domain RAF_RS04165 IPR006847 Translation initiation factor IF-2, N-terminal RAF_RS04165 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04165 IPR005225 Small GTP-binding protein domain RAF_RS04165 IPR000795 Transcription factor, GTP-binding domain RAF_RS04165 IPR000178 Translation initiation factor aIF-2, bacterial-like RAF_RS04165 IPR015760 Translation initiation factor IF- 2 RAF_RS04165 IPR009000 Translation protein, beta-barrel domain superfamily RAF_RS04165 IPR036925 Translation initiation factor IF-2, domain 3 superfamily RAF_RS04165 IPR023115 Translation initiation factor IF- 2, domain 3 RAF_RS04170 IPR009019 K homology domain superfamily, prokaryotic type RAF_RS04170 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical RAF_RS04170 IPR004087 K Homology domain RAF_RS04170 IPR013735 Transcription factor NusA, N-terminal RAF_RS04170 IPR010214 Transcription termination factor NusA, C-terminal duplication RAF_RS04170 IPR012340 Nucleic acid-binding, OB-fold RAF_RS04170 IPR003029 S1 domain RAF_RS04170 IPR022967 RNA-binding domain, S1 RAF_RS04170 IPR036555 NusA, N-terminal domain superfamily RAF_RS04170 IPR015946 K homology domain-like, alpha/beta RAF_RS04170 IPR010213 Transcription termination factor NusA RAF_RS04170 IPR025249 KH domain, NusA-like RAF_RS04170 IPR030842 Transcription termination/antitermination protein NusA, bacterial RAF_RS04175 IPR028989 Ribosome maturation factor RimP, N-terminal RAF_RS04175 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily RAF_RS04175 IPR003728 Ribosome maturation factor RimP RAF_RS04175 IPR035956 RimP, N-terminal domain superfamily RAF_RS04175 IPR028998 Ribosome maturation factor RimP, C-terminal RAF_RS04190 IPR036388 Winged helix-like DNA-binding domain superfamily RAF_RS04190 IPR036390 Winged helix DNA-binding domain superfamily RAF_RS04190 IPR030489 Transcription regulator Rrf2-type, conserved site RAF_RS04190 IPR000944 Transcription regulator Rrf2-type RAF_RS04195 IPR036986 RNA-binding S4 domain superfamily RAF_RS04195 IPR002942 RNA-binding S4 domain RAF_RS04195 IPR004538 Haemolysin A /rRNA methyltransferase TlyA RAF_RS04195 IPR002877 Ribosomal RNA methyltransferase FtsJ domain RAF_RS04195 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS04200 IPR002305 Aminoacyl-tRNA synthetase, class Ic RAF_RS04200 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS04200 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 RAF_RS04200 IPR002307 Tyrosine-tRNA ligase RAF_RS04200 IPR036986 RNA-binding S4 domain superfamily RAF_RS04200 IPR002942 RNA-binding S4 domain RAF_RS04200 IPR024088 Tyrosine-tRNA ligase, bacterial-type RAF_RS04265 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid RAF_RS04265 IPR001434 Domain of unknown function DUF11 RAF_RS04265 IPR041246 Bacterial alpha-2-macroglobulin MG10 domain RAF_RS04265 IPR041462 Bacterial Alpha-2-macroglobulin, MG6 domain RAF_RS04265 IPR041203 Bacterial Alpha-2-macroglobulin, MG5 domain RAF_RS04265 IPR021868 Alpha-2-macroglobulin MG3 domain RAF_RS04265 IPR011625 Alpha-2-macroglobulin, bait region domain RAF_RS04265 IPR002890 Macroglobulin domain RAF_RS04265 IPR001599 Alpha-2-macroglobulin RAF_RS04280 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal RAF_RS04280 IPR013328 6-phosphogluconate dehydrogenase, domain 2 RAF_RS04280 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily RAF_RS04285 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding RAF_RS04285 IPR036291 NAD(P)-binding domain superfamily RAF_RS04315 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site RAF_RS04315 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 RAF_RS04315 IPR002938 FAD-binding domain RAF_RS04315 IPR036188 FAD/NAD(P)-binding domain superfamily RAF_RS04325 IPR003593 AAA+ ATPase domain RAF_RS04325 IPR009057 Homeobox-like domain superfamily RAF_RS04325 IPR002197 DNA binding HTH domain, Fis-type RAF_RS04325 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04325 IPR001789 Signal transduction response regulator, receiver domain RAF_RS04325 IPR002078 RNA polymerase sigma factor 54 interaction domain RAF_RS04325 IPR025944 Sigma-54 interaction domain, conserved site RAF_RS04325 IPR011006 CheY-like superfamily RAF_RS04340 IPR036138 Penicillin-binding protein, dimerisation domain superfamily RAF_RS04340 IPR005311 Penicillin-binding protein, dimerisation domain RAF_RS04340 IPR001460 Penicillin-binding protein, transpeptidase RAF_RS04340 IPR017790 Penicillin-binding protein 2 RAF_RS04340 IPR012338 Beta-lactamase/transpeptidase-like RAF_RS04355 IPR005311 Penicillin-binding protein, dimerisation domain RAF_RS04355 IPR012338 Beta-lactamase/transpeptidase-like RAF_RS04355 IPR036138 Penicillin-binding protein, dimerisation domain superfamily RAF_RS04355 IPR001460 Penicillin-binding protein, transpeptidase RAF_RS04365 IPR002903 Ribosomal RNA small subunit methyltransferase H RAF_RS04365 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily RAF_RS04365 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS04370 IPR038619 MraZ superfamily RAF_RS04370 IPR007159 SpoVT-AbrB domain RAF_RS04370 IPR020603 MraZ domain RAF_RS04370 IPR035644 MraZ, C-terminal RAF_RS04370 IPR037914 SpoVT-AbrB domain superfamily RAF_RS04370 IPR035642 MraZ, N-terminal RAF_RS04370 IPR003444 Transcriptional regulator MraZ RAF_RS04375 IPR036770 Ankyrin repeat-containing domain superfamily RAF_RS04375 IPR020683 Ankyrin repeat-containing domain RAF_RS04375 IPR002110 Ankyrin repeat RAF_RS04385 IPR001734 Sodium/solute symporter RAF_RS04385 IPR038377 Sodium/glucose symporter superfamily RAF_RS04390 IPR001162 UvrC family homology region RAF_RS04390 IPR000305 GIY-YIG endonuclease RAF_RS04390 IPR035901 GIY-YIG endonuclease superfamily RAF_RS04390 IPR010994 RuvA domain 2-like RAF_RS04390 IPR001943 UVR domain RAF_RS04390 IPR036876 UVR domain superfamily RAF_RS04390 IPR038476 UvrC homology region 2 superfamily RAF_RS04390 IPR004791 UvrABC system, subunit C RAF_RS04395 IPR007410 Copper chaperone PCuAC RAF_RS04395 IPR036182 Copper chaperone PCuAC superfamily RAF_RS04415 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding RAF_RS04415 IPR036388 Winged helix-like DNA-binding domain superfamily RAF_RS04415 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily RAF_RS04415 IPR023546 Methylated-DNA--protein-cysteine methyltransferase RAF_RS04415 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain RAF_RS04415 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain RAF_RS04415 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site RAF_RS04465 IPR036770 Ankyrin repeat-containing domain superfamily RAF_RS04465 IPR020683 Ankyrin repeat-containing domain RAF_RS04465 IPR002110 Ankyrin repeat RAF_RS04470 IPR004027 SEC-C motif RAF_RS04470 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04470 IPR011116 SecA Wing/Scaffold RAF_RS04470 IPR000185 Protein translocase subunit SecA RAF_RS04470 IPR020937 SecA conserved site RAF_RS04470 IPR011130 SecA, preprotein cross-linking domain RAF_RS04470 IPR014018 SecA motor DEAD RAF_RS04470 IPR011115 SecA DEAD-like, N-terminal RAF_RS04470 IPR036266 SecA, Wing/Scaffold superfamily RAF_RS04470 IPR036670 SecA, preprotein cross-linking domain superfamily RAF_RS04475 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type RAF_RS04480 IPR037143 4'-phosphopantetheinyl transferase domain superfamily RAF_RS04480 IPR004568 Phosphopantetheine-protein transferase domain RAF_RS04480 IPR002582 Holo-[acyl carrier protein] synthase RAF_RS04480 IPR008278 4'-phosphopantetheinyl transferase domain RAF_RS04485 IPR012293 RNA polymerase subunit, RPB6/omega RAF_RS04485 IPR036161 RPB6/omega subunit-like superfamily RAF_RS04485 IPR006110 RNA polymerase, subunit omega/K/RPB6 RAF_RS04485 IPR003716 DNA-directed RNA polymerase, omega subunit RAF_RS04490 IPR036968 Enolpyruvate transferase domain superfamily RAF_RS04490 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase RAF_RS04490 IPR001986 Enolpyruvate transferase domain RAF_RS04490 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta RAF_RS04495 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal RAF_RS04495 IPR003594 Histidine kinase/HSP90-like ATPase RAF_RS04495 IPR020568 Ribosomal protein S5 domain 2-type fold RAF_RS04495 IPR011557 DNA gyrase, subunit B RAF_RS04495 IPR002288 DNA gyrase B subunit, C-terminal RAF_RS04495 IPR018522 DNA topoisomerase, type IIA, conserved site RAF_RS04495 IPR006171 TOPRIM domain RAF_RS04495 IPR034160 DNA gyrase subunit B, TOPRIM domain RAF_RS04495 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAF_RS04495 IPR013760 DNA topoisomerase, type IIA-like domain superfamily RAF_RS04495 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAF_RS04495 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 RAF_RS04495 IPR001241 DNA topoisomerase, type IIA RAF_RS04500 IPR023214 HAD superfamily RAF_RS04500 IPR000086 NUDIX hydrolase domain RAF_RS04500 IPR020084 NUDIX hydrolase, conserved site RAF_RS04500 IPR036412 HAD-like superfamily RAF_RS04500 IPR006357 HAD-superfamily hydrolase, subfamily IIA RAF_RS04500 IPR015797 NUDIX hydrolase-like domain superfamily RAF_RS04500 IPR020476 NUDIX hydrolase RAF_RS04510 IPR038076 MgtE, N-terminal domain superfamily RAF_RS04510 IPR006669 Magnesium transporter MgtE RAF_RS04510 IPR006667 SLC41 divalent cation transporters, integral membrane domain RAF_RS04510 IPR006668 Magnesium transporter, MgtE intracellular domain RAF_RS04510 IPR000644 CBS domain RAF_RS04510 IPR038048 Magnesium transporter MgtE, transmembrane domain RAF_RS04510 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily RAF_RS04555 IPR003849 Preprotein translocase YajC RAF_RS04560 IPR001036 Acriflavin resistance protein RAF_RS04560 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RAF_RS04560 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial RAF_RS04560 IPR005791 Protein translocase subunit SecD RAF_RS04565 IPR003782 Copper chaperone SCO1/SenC RAF_RS04565 IPR036249 Thioredoxin-like superfamily RAF_RS04570 IPR036127 CcmE-like superfamily RAF_RS04570 IPR004329 CcmE/CycJ protein RAF_RS04575 IPR008162 Inorganic pyrophosphatase RAF_RS04575 IPR036649 Inorganic pyrophosphatase superfamily RAF_RS04580 IPR004268 Peptidoglycan biosynthesis protein MurJ RAF_RS04585 IPR008875 TraX RAF_RS04595 IPR012340 Nucleic acid-binding, OB-fold RAF_RS04595 IPR033454 RecG, wedge domain RAF_RS04595 IPR004609 ATP-dependent DNA helicase RecG RAF_RS04595 IPR011545 DEAD/DEAH box helicase domain RAF_RS04595 IPR014001 Helicase superfamily 1/2, ATP-binding domain RAF_RS04595 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04595 IPR001650 Helicase, C-terminal RAF_RS04610 IPR004163 Coenzyme A transferase binding site RAF_RS04610 IPR037171 NagB/RpiA transferase-like RAF_RS04610 IPR012792 3-oxoacid CoA-transferase, subunit A RAF_RS04610 IPR004165 Coenzyme A transferase family I RAF_RS04615 IPR012791 3-oxoacid CoA-transferase, subunit B RAF_RS04615 IPR037171 NagB/RpiA transferase-like RAF_RS04615 IPR004164 Coenzyme A transferase active site RAF_RS04615 IPR004165 Coenzyme A transferase family I RAF_RS04635 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site RAF_RS04635 IPR000715 Glycosyl transferase, family 4 RAF_RS04635 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase RAF_RS04640 IPR036565 Mur-like, catalytic domain superfamily RAF_RS04640 IPR004101 Mur ligase, C-terminal RAF_RS04640 IPR036615 Mur ligase, C-terminal domain superfamily RAF_RS04640 IPR013221 Mur ligase, central RAF_RS04640 IPR000713 Mur ligase, N-terminal catalytic domain RAF_RS04640 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase RAF_RS04640 IPR035911 MurE/MurF, N-terminal RAF_RS04645 IPR004101 Mur ligase, C-terminal RAF_RS04645 IPR036565 Mur-like, catalytic domain superfamily RAF_RS04645 IPR036615 Mur ligase, C-terminal domain superfamily RAF_RS04645 IPR013221 Mur ligase, central RAF_RS04645 IPR000713 Mur ligase, N-terminal catalytic domain RAF_RS04645 IPR035911 MurE/MurF, N-terminal RAF_RS04645 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase RAF_RS04650 IPR041471 UvrB, interaction domain RAF_RS04650 IPR005118 Transcription-repair-coupling factor, C-terminal domain RAF_RS04650 IPR037235 TRCF-like, C-terminal domain RAF_RS04650 IPR004576 Transcription-repair coupling factor RAF_RS04650 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04650 IPR014001 Helicase superfamily 1/2, ATP-binding domain RAF_RS04650 IPR011545 DEAD/DEAH box helicase domain RAF_RS04650 IPR003711 CarD-like/TRCF domain RAF_RS04650 IPR036101 CarD-like/TRCF domain superfamily RAF_RS04650 IPR001650 Helicase, C-terminal RAF_RS04660 IPR036873 Rhodanese-like domain superfamily RAF_RS04660 IPR001763 Rhodanese-like domain RAF_RS04665 IPR010921 Trp repressor/replication initiator RAF_RS04665 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04665 IPR038454 DnaA, N-terminal domain superfamily RAF_RS04665 IPR024633 DnaA N-terminal domain RAF_RS04665 IPR013317 Chromosomal replication initiator protein DnaA RAF_RS04665 IPR018312 Chromosomal replication control, initiator DnaA, conserved site RAF_RS04665 IPR020591 Chromosomal replication control, initiator DnaA-like RAF_RS04665 IPR001957 Chromosomal replication control, initiator DnaA RAF_RS04665 IPR003593 AAA+ ATPase domain RAF_RS04665 IPR013159 Chromosomal replication initiator, DnaA C-terminal RAF_RS04695 IPR036259 MFS transporter superfamily RAF_RS04700 IPR036259 MFS transporter superfamily RAF_RS04720 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04720 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 RAF_RS04720 IPR004095 TGS RAF_RS04720 IPR031167 OBG-type guanine nucleotide-binding (G) domain RAF_RS04720 IPR006073 GTP binding domain RAF_RS04720 IPR013029 YchF, C-terminal domain RAF_RS04720 IPR023192 TGS-like domain superfamily RAF_RS04720 IPR012676 TGS-like RAF_RS04720 IPR012675 Beta-grasp domain superfamily RAF_RS04720 IPR041706 YchF, N-terminal RAF_RS04735 IPR036416 Peptidyl-tRNA hydrolase superfamily RAF_RS04735 IPR018171 Peptidyl-tRNA hydrolase, conserved site RAF_RS04735 IPR001328 Peptidyl-tRNA hydrolase RAF_RS04740 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal RAF_RS04740 IPR020055 Ribosomal protein L25, short-form RAF_RS04740 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily RAF_RS04740 IPR001021 Ribosomal protein L25, long-form RAF_RS04740 IPR020057 Ribosomal protein L25, beta domain RAF_RS04740 IPR029751 Ribosomal protein L25 RAF_RS04740 IPR037121 Ribosomal protein L25, C-terminal RAF_RS04745 IPR013785 Aldolase-type TIM barrel RAF_RS04745 IPR024924 7-carboxy-7-deazaguanine synthase-like RAF_RS04745 IPR007197 Radical SAM RAF_RS04750 IPR021137 Ribosomal protein L35 RAF_RS04750 IPR018265 Ribosomal protein L35, conserved site RAF_RS04750 IPR037229 Ribosomal protein L35 superfamily RAF_RS04750 IPR001706 Ribosomal protein L35, non-mitochondrial RAF_RS04755 IPR035566 Ribosomal protein L20, C-terminal RAF_RS04755 IPR005813 Ribosomal protein L20 RAF_RS04760 IPR000271 Ribosomal protein L34 RAF_RS04760 IPR020939 Ribosomal protein L34, conserved site RAF_RS04765 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAF_RS04765 IPR000100 Ribonuclease P RAF_RS04765 IPR020568 Ribosomal protein S5 domain 2-type fold RAF_RS04765 IPR020539 Ribonuclease P, conserved site RAF_RS04780 IPR036770 Ankyrin repeat-containing domain superfamily RAF_RS04780 IPR002110 Ankyrin repeat RAF_RS04780 IPR020683 Ankyrin repeat-containing domain RAF_RS04790 IPR004488 Magnesium/cobalt transport protein CorA RAF_RS04790 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB RAF_RS04815 IPR004358 Signal transduction histidine kinase-related protein, C-terminal RAF_RS04815 IPR003594 Histidine kinase/HSP90-like ATPase RAF_RS04815 IPR003660 HAMP domain RAF_RS04815 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain RAF_RS04815 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAF_RS04815 IPR005467 Histidine kinase domain RAF_RS04815 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily RAF_RS04820 IPR001911 Ribosomal protein S21 RAF_RS04840 IPR002300 Aminoacyl-tRNA synthetase, class Ia RAF_RS04840 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain RAF_RS04840 IPR033709 Isoleucyl tRNA synthetase type 2, anticodon-binding domain RAF_RS04840 IPR002301 Isoleucine-tRNA ligase RAF_RS04840 IPR023586 Isoleucine-tRNA ligase, type 2 RAF_RS04840 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding RAF_RS04840 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS04840 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site RAF_RS04840 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding RAF_RS04855 IPR036770 Ankyrin repeat-containing domain superfamily RAF_RS04855 IPR002110 Ankyrin repeat RAF_RS04855 IPR020683 Ankyrin repeat-containing domain RAF_RS04865 IPR011761 ATP-grasp fold RAF_RS04865 IPR013815 ATP-grasp fold, subdomain 1 RAF_RS04865 IPR011053 Single hybrid motif RAF_RS04865 IPR011054 Rudiment single hybrid motif RAF_RS04865 IPR000089 Biotin/lipoyl attachment RAF_RS04865 IPR005482 Biotin carboxylase, C-terminal RAF_RS04865 IPR016185 Pre-ATP-grasp domain superfamily RAF_RS04865 IPR041265 Propionyl-coenzyme A carboxylase, BT domain RAF_RS04865 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain RAF_RS04865 IPR001882 Biotin-binding site RAF_RS04865 IPR011764 Biotin carboxylation domain RAF_RS04865 IPR005481 Biotin carboxylase-like, N-terminal domain RAF_RS04870 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal RAF_RS04870 IPR034733 Acetyl-CoA carboxylase RAF_RS04870 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal RAF_RS04870 IPR029045 ClpP/crotonase-like domain superfamily RAF_RS04880 IPR020845 AMP-binding, conserved site RAF_RS04880 IPR000873 AMP-dependent synthetase/ligase RAF_RS04880 IPR023775 Bifunctional protein Aas RAF_RS04880 IPR042099 AMP-dependent synthetase-like superfamily RAF_RS04880 IPR002123 Phospholipid/glycerol acyltransferase RAF_RS04890 IPR001626 ABC transporter, TroCD-like RAF_RS04890 IPR037294 ABC transporter, BtuC-like RAF_RS04895 IPR010233 Ubiquinone biosynthesis O-methyltransferase RAF_RS04895 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS04895 IPR005728 Rickettsial palindromic element RAF_RS04900 IPR000924 Glutamyl/glutaminyl-tRNA synthetase RAF_RS04900 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial RAF_RS04900 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 RAF_RS04900 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding RAF_RS04900 IPR005728 Rickettsial palindromic element RAF_RS04900 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS04900 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain RAF_RS04900 IPR033910 Glutamyl-tRNA synthetase RAF_RS04910 IPR001844 Chaperonin Cpn60 RAF_RS04910 IPR018370 Chaperonin Cpn60, conserved site RAF_RS04910 IPR027409 GroEL-like apical domain superfamily RAF_RS04910 IPR002423 Chaperonin Cpn60/TCP-1 family RAF_RS04910 IPR027410 TCP-1-like chaperonin intermediate domain superfamily RAF_RS04910 IPR027413 GroEL-like equatorial domain superfamily RAF_RS04915 IPR020818 GroES chaperonin family RAF_RS04915 IPR018369 Chaperonin GroES, conserved site RAF_RS04915 IPR011032 GroES-like superfamily RAF_RS04915 IPR037124 GroES chaperonin superfamily RAF_RS04945 IPR027408 PNPase/RNase PH domain superfamily RAF_RS04945 IPR015847 Exoribonuclease, phosphorolytic domain 2 RAF_RS04945 IPR036345 Exoribonuclease, PH domain 2 superfamily RAF_RS04945 IPR020568 Ribosomal protein S5 domain 2-type fold RAF_RS04945 IPR002381 Ribonuclease PH, bacterial-type RAF_RS04945 IPR018336 Ribonuclease PH, conserved site RAF_RS04945 IPR001247 Exoribonuclease, phosphorolytic domain 1 RAF_RS04950 IPR013805 GrpE nucleotide exchange factor, coiled-coil RAF_RS04950 IPR000740 GrpE nucleotide exchange factor RAF_RS04950 IPR009012 GrpE nucleotide exchange factor, head RAF_RS04955 IPR002549 Transmembrane protein TqsA-like RAF_RS05005 IPR036510 Ribosomal protein S20 superfamily RAF_RS05005 IPR002583 Ribosomal protein S20 RAF_RS05010 IPR036373 Ribosomal protein L17 superfamily RAF_RS05010 IPR000456 Ribosomal protein L17 RAF_RS05015 IPR036643 DNA-directed RNA polymerase, insert domain superfamily RAF_RS05015 IPR011262 DNA-directed RNA polymerase, insert domain RAF_RS05015 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type RAF_RS05015 IPR011773 DNA-directed RNA polymerase, alpha subunit RAF_RS05015 IPR036603 RNA polymerase, RBP11-like subunit RAF_RS05015 IPR011260 RNA polymerase, alpha subunit, C-terminal RAF_RS05020 IPR036967 Ribosomal protein S11 superfamily RAF_RS05020 IPR018102 Ribosomal S11, conserved site RAF_RS05020 IPR019981 Ribosomal protein S11, bacterial-type RAF_RS05020 IPR001971 Ribosomal protein S11 RAF_RS05025 IPR027437 30s ribosomal protein S13, C-terminal RAF_RS05025 IPR001892 Ribosomal protein S13 RAF_RS05025 IPR010979 Ribosomal protein S13-like, H2TH RAF_RS05025 IPR019980 Ribosomal protein S13, bacterial-type RAF_RS05025 IPR018269 Ribosomal protein S13, conserved site RAF_RS05030 IPR000850 Adenylate kinase/UMP-CMP kinase RAF_RS05030 IPR033690 Adenylate kinase, conserved site RAF_RS05030 IPR006259 Adenylate kinase subfamily RAF_RS05030 IPR007862 Adenylate kinase, active site lid domain RAF_RS05030 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05035 IPR026593 Protein translocase subunit SecY RAF_RS05035 IPR002208 SecY/SEC61-alpha family RAF_RS05035 IPR030659 SecY conserved site RAF_RS05035 IPR023201 SecY domain superfamily RAF_RS05040 IPR036227 Ribosomal L18e/L15P superfamily RAF_RS05040 IPR005749 Ribosomal protein L15, bacterial-type RAF_RS05040 IPR030878 Ribosomal protein L15 RAF_RS05040 IPR021131 Ribosomal protein L18e/L15P RAF_RS05045 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily RAF_RS05045 IPR005996 Ribosomal protein L30, bacterial-type RAF_RS05045 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain RAF_RS05050 IPR020568 Ribosomal protein S5 domain 2-type fold RAF_RS05050 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAF_RS05050 IPR018192 Ribosomal protein S5, N-terminal, conserved site RAF_RS05050 IPR005712 Ribosomal protein S5, bacterial-type RAF_RS05050 IPR000851 Ribosomal protein S5 RAF_RS05050 IPR013810 Ribosomal protein S5, N-terminal RAF_RS05050 IPR005324 Ribosomal protein S5, C-terminal RAF_RS05055 IPR004389 Ribosomal protein L18, bacterial-type RAF_RS05055 IPR005484 Ribosomal protein L18 RAF_RS05060 IPR019906 Ribosomal protein L6, bacterial-type RAF_RS05060 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily RAF_RS05060 IPR020040 Ribosomal protein L6, alpha-beta domain RAF_RS05060 IPR002358 Ribosomal protein L6, conserved site RAF_RS05060 IPR000702 Ribosomal protein L6 RAF_RS05065 IPR035987 Ribosomal protein S8 superfamily RAF_RS05065 IPR000630 Ribosomal protein S8 RAF_RS05070 IPR018271 Ribosomal protein S14, conserved site RAF_RS05070 IPR023036 Ribosomal protein S14, bacterial/plastid RAF_RS05070 IPR001209 Ribosomal protein S14 RAF_RS05075 IPR031309 Ribosomal protein L5, C-terminal RAF_RS05075 IPR031310 Ribosomal protein L5, N-terminal RAF_RS05075 IPR020929 Ribosomal protein L5, conserved site RAF_RS05075 IPR020930 Ribosomal protein L5, bacterial-type RAF_RS05075 IPR002132 Ribosomal protein L5 RAF_RS05075 IPR022803 Ribosomal protein L5 domain superfamily RAF_RS05080 IPR005824 KOW RAF_RS05080 IPR041988 Ribosomal Protein L26/L24, KOW domain RAF_RS05080 IPR014722 Ribosomal protein L2, domain 2 RAF_RS05080 IPR003256 Ribosomal protein L24 RAF_RS05080 IPR008991 Translation protein SH3-like domain superfamily RAF_RS05080 IPR005825 Ribosomal protein L24/L26, conserved site RAF_RS05085 IPR005745 Ribosomal protein L14P, bacterial-type RAF_RS05085 IPR000218 Ribosomal protein L14P RAF_RS05085 IPR036853 Ribosomal protein L14 superfamily RAF_RS05085 IPR019972 Ribosomal protein L14P, conserved site RAF_RS05090 IPR019979 Ribosomal protein S17, conserved site RAF_RS05090 IPR000266 Ribosomal protein S17/S11 RAF_RS05090 IPR012340 Nucleic acid-binding, OB-fold RAF_RS05090 IPR019984 30S ribosomal protein S17 RAF_RS05095 IPR036049 Ribosomal protein L29/L35 superfamily RAF_RS05095 IPR018254 Ribosomal protein L29, conserved site RAF_RS05095 IPR001854 Ribosomal protein L29/L35 RAF_RS05100 IPR016180 Ribosomal protein L10e/L16 RAF_RS05100 IPR036920 Ribosomal protein L10e/L16 superfamily RAF_RS05100 IPR020798 Ribosomal protein L16, conserved site RAF_RS05100 IPR000114 Ribosomal protein L16 RAF_RS05105 IPR018280 Ribosomal protein S3, conserved site RAF_RS05105 IPR004087 K Homology domain RAF_RS05105 IPR036419 Ribosomal protein S3, C-terminal domain superfamily RAF_RS05105 IPR004044 K Homology domain, type 2 RAF_RS05105 IPR009019 K homology domain superfamily, prokaryotic type RAF_RS05105 IPR005704 Ribosomal protein S3, bacterial-type RAF_RS05105 IPR001351 Ribosomal protein S3, C-terminal RAF_RS05105 IPR015946 K homology domain-like, alpha/beta RAF_RS05110 IPR036394 Ribosomal protein L22/L17 superfamily RAF_RS05110 IPR018260 Ribosomal protein L22/L17, conserved site RAF_RS05110 IPR001063 Ribosomal protein L22/L17 RAF_RS05110 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type RAF_RS05115 IPR002222 Ribosomal protein S19/S15 RAF_RS05115 IPR023575 Ribosomal protein S19, superfamily RAF_RS05115 IPR005732 Ribosomal protein S19, bacterial-type RAF_RS05115 IPR020934 Ribosomal protein S19 conserved site RAF_RS05120 IPR022671 Ribosomal protein L2, conserved site RAF_RS05120 IPR008991 Translation protein SH3-like domain superfamily RAF_RS05120 IPR014726 Ribosomal protein L2, domain 3 RAF_RS05120 IPR022669 Ribosomal protein L2, C-terminal RAF_RS05120 IPR005880 Ribosomal protein L2, bacterial/organellar-type RAF_RS05120 IPR002171 Ribosomal protein L2 RAF_RS05120 IPR014722 Ribosomal protein L2, domain 2 RAF_RS05120 IPR022666 Ribosomal Proteins L2, RNA binding domain RAF_RS05120 IPR012340 Nucleic acid-binding, OB-fold RAF_RS05125 IPR013025 Ribosomal protein L25/L23 RAF_RS05125 IPR012678 Ribosomal protein L23/L15e core domain superfamily RAF_RS05125 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily RAF_RS05130 IPR002136 Ribosomal protein L4/L1e RAF_RS05130 IPR023574 Ribosomal protein L4 domain superfamily RAF_RS05130 IPR013005 50S ribosomal protein uL4 RAF_RS05135 IPR000597 Ribosomal protein L3 RAF_RS05135 IPR009000 Translation protein, beta-barrel domain superfamily RAF_RS05135 IPR019926 Ribosomal protein L3, conserved site RAF_RS05135 IPR019927 Ribosomal protein L3, bacterial/organelle-type RAF_RS05140 IPR001848 Ribosomal protein S10 RAF_RS05140 IPR027486 Ribosomal protein S10 domain RAF_RS05140 IPR036838 Ribosomal protein S10 domain superfamily RAF_RS05145 IPR031157 Tr-type G domain, conserved site RAF_RS05145 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05145 IPR009000 Translation protein, beta-barrel domain superfamily RAF_RS05145 IPR000795 Transcription factor, GTP-binding domain RAF_RS05145 IPR005225 Small GTP-binding protein domain RAF_RS05145 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RAF_RS05145 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain RAF_RS05145 IPR033720 Elongation factor Tu, domain 2 RAF_RS05145 IPR004161 Translation elongation factor EFTu-like, domain 2 RAF_RS05145 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal RAF_RS05145 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle RAF_RS05160 IPR004441 RNA methyltransferase TrmH family RAF_RS05160 IPR029028 Alpha/beta knot methyltransferases RAF_RS05160 IPR029064 50S ribosomal protein L30e-like RAF_RS05160 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RAF_RS05160 IPR001537 tRNA/rRNA methyltransferase, SpoU type RAF_RS05160 IPR013123 RNA 2-O ribose methyltransferase, substrate binding RAF_RS05170 IPR018951 Fumarase C, C-terminal RAF_RS05170 IPR024083 Fumarase/histidase, N-terminal RAF_RS05170 IPR000362 Fumarate lyase family RAF_RS05170 IPR022761 Fumarate lyase, N-terminal RAF_RS05170 IPR008948 L-Aspartase-like RAF_RS05170 IPR005677 Fumarate hydratase, class II RAF_RS05170 IPR020557 Fumarate lyase, conserved site RAF_RS05185 IPR020805 Cell division protein FtsZ, conserved site RAF_RS05185 IPR024757 Cell division protein FtsZ, C-terminal RAF_RS05185 IPR000158 Cell division protein FtsZ RAF_RS05185 IPR003008 Tubulin/FtsZ, GTPase domain RAF_RS05185 IPR036525 Tubulin/FtsZ, GTPase domain superfamily RAF_RS05185 IPR037103 Tubulin/FtsZ, C-terminal domain superfamily RAF_RS05185 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain RAF_RS05185 IPR008280 Tubulin/FtsZ, C-terminal RAF_RS05195 IPR005658 Proteinase inhibitor I11, ecotin RAF_RS05195 IPR036198 Ecotin superfamily RAF_RS05200 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal RAF_RS05200 IPR034904 Fe-S cluster assembly domain superfamily RAF_RS05205 IPR011701 Major facilitator superfamily RAF_RS05205 IPR036259 MFS transporter superfamily RAF_RS05205 IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1 RAF_RS05210 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site RAF_RS05210 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05210 IPR011545 DEAD/DEAH box helicase domain RAF_RS05210 IPR030880 DEAD-box ATP-dependent RNA helicase CshA RAF_RS05210 IPR014001 Helicase superfamily 1/2, ATP-binding domain RAF_RS05210 IPR001650 Helicase, C-terminal RAF_RS05210 IPR014014 RNA helicase, DEAD-box type, Q motif RAF_RS05215 IPR012156 Cold shock, CspA RAF_RS05215 IPR012340 Nucleic acid-binding, OB-fold RAF_RS05215 IPR002059 Cold-shock protein, DNA-binding RAF_RS05215 IPR019844 Cold-shock (CSD) domain RAF_RS05215 IPR011129 Cold shock domain RAF_RS05225 IPR011530 Ribosomal RNA adenine dimethylase RAF_RS05225 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal RAF_RS05225 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site RAF_RS05225 IPR023165 rRNA adenine dimethylase-like RAF_RS05225 IPR022436 Rickettsia palindromic element RPE2 RAF_RS05225 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm RAF_RS05225 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS05230 IPR027304 Trigger factor/SurA domain superfamily RAF_RS05245 IPR003753 Exonuclease VII, large subunit RAF_RS05245 IPR020579 Exonuclease VII, large subunit, C-terminal RAF_RS05245 IPR025824 OB-fold nucleic acid binding domain RAF_RS05260 IPR037493 Exodeoxyribonuclease III-like RAF_RS05260 IPR005135 Endonuclease/exonuclease/phosphatase RAF_RS05260 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RAF_RS05260 IPR020848 AP endonuclease 1, conserved site RAF_RS05260 IPR020847 AP endonuclease 1, binding site RAF_RS05260 IPR004808 AP endonuclease 1 RAF_RS05270 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05270 IPR005225 Small GTP-binding protein domain RAF_RS05270 IPR032859 GTPase Der, C-terminal KH-domain-like RAF_RS05270 IPR015946 K homology domain-like, alpha/beta RAF_RS05270 IPR006073 GTP binding domain RAF_RS05270 IPR016484 GTP-binding protein EngA RAF_RS05270 IPR031166 EngA-type guanine nucleotide-binding (G) domain RAF_RS05275 IPR041682 AAA domain, group 14 RAF_RS05275 IPR025420 Domain of unknown function DUF4143 RAF_RS05275 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05300 IPR004147 UbiB domain RAF_RS05300 IPR000719 Protein kinase domain RAF_RS05300 IPR010232 Probable protein kinase UbiB RAF_RS05300 IPR011009 Protein kinase-like domain superfamily RAF_RS05305 IPR023576 UbiE/COQ5 methyltransferase, conserved site RAF_RS05305 IPR004033 UbiE/COQ5 methyltransferase RAF_RS05305 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS05310 IPR010663 Zinc finger, FPG/IleRS-type RAF_RS05310 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain RAF_RS05310 IPR020629 Formamidopyrimidine-DNA glycosylase RAF_RS05310 IPR010979 Ribosomal protein S13-like, H2TH RAF_RS05310 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding RAF_RS05310 IPR035937 MutM-like, N-terminal RAF_RS05310 IPR000214 Zinc finger, DNA glycosylase/AP lyase-type RAF_RS05310 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site RAF_RS05340 IPR018228 Deoxyribonuclease, TatD-related, conserved site RAF_RS05340 IPR015991 Uncharacterised hydrolase TatD-type RAF_RS05340 IPR032466 Metal-dependent hydrolase RAF_RS05340 IPR001130 TatD family RAF_RS05345 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS05345 IPR023457 Methionine-tRNA synthetase, type 2 RAF_RS05345 IPR014758 Methionyl-tRNA synthetase RAF_RS05345 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding RAF_RS05345 IPR041872 Methionyl-tRNA synthetase, anticodon-binding domain RAF_RS05345 IPR015413 Methionyl/Leucyl tRNA synthetase RAF_RS05345 IPR033911 Methioninyl-tRNA synthetase core domain RAF_RS05345 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding RAF_RS05350 IPR018095 Thymidylate kinase, conserved site RAF_RS05350 IPR039430 Thymidylate kinase-like domain RAF_RS05350 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05350 IPR018094 Thymidylate kinase RAF_RS05355 IPR020846 Major facilitator superfamily domain RAF_RS05355 IPR011701 Major facilitator superfamily RAF_RS05355 IPR036259 MFS transporter superfamily RAF_RS05355 IPR005829 Sugar transporter, conserved site RAF_RS05360 IPR000537 UbiA prenyltransferase family RAF_RS05360 IPR039653 Prenyltransferase RAF_RS05360 IPR030470 UbiA prenyltransferase conserved site RAF_RS05360 IPR006370 4-hydroxybenzoate polyprenyltransferase-like RAF_RS05370 IPR002303 Valine-tRNA ligase RAF_RS05370 IPR022874 Valine-tRNA ligase, type 2 RAF_RS05370 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain RAF_RS05370 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding RAF_RS05370 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS05370 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding RAF_RS05370 IPR033705 Valyl tRNA synthetase, anticodon-binding domain RAF_RS05370 IPR002300 Aminoacyl-tRNA synthetase, class Ia RAF_RS05370 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site RAF_RS05380 IPR007074 LicD family RAF_RS05380 IPR005728 Rickettsial palindromic element RAF_RS05395 IPR003798 DNA recombination RmuC RAF_RS05450 IPR038366 Zinc finger, ClpX C4-type superfamily RAF_RS05450 IPR003593 AAA+ ATPase domain RAF_RS05450 IPR010603 Zinc finger, ClpX C4-type RAF_RS05450 IPR003959 ATPase, AAA-type, core RAF_RS05450 IPR004487 Clp protease, ATP-binding subunit ClpX RAF_RS05450 IPR019489 Clp ATPase, C-terminal RAF_RS05450 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05460 IPR018317 Queuosine biosynthesis protein QueC RAF_RS05460 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS05475 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05475 IPR011527 ABC transporter type 1, transmembrane domain RAF_RS05475 IPR003593 AAA+ ATPase domain RAF_RS05475 IPR017871 ABC transporter, conserved site RAF_RS05475 IPR036640 ABC transporter type 1, transmembrane domain superfamily RAF_RS05475 IPR003439 ABC transporter-like RAF_RS05480 IPR024247 Protein of unknown function DUF2673 RAF_RS05485 IPR004812 Drug resistance transporter Bcr/CmlA subfamily RAF_RS05485 IPR036259 MFS transporter superfamily RAF_RS05485 IPR020846 Major facilitator superfamily domain RAF_RS05485 IPR011701 Major facilitator superfamily RAF_RS05490 IPR003838 ABC transporter permease protein domain RAF_RS05490 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E RAF_RS05490 IPR025857 MacB-like periplasmic core domain RAF_RS05495 IPR003593 AAA+ ATPase domain RAF_RS05495 IPR003439 ABC transporter-like RAF_RS05495 IPR017871 ABC transporter, conserved site RAF_RS05495 IPR015854 ABC transporter, lipoprotein release, LolD RAF_RS05495 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05505 IPR000644 CBS domain RAF_RS05505 IPR002550 CNNM, transmembrane domain RAF_RS05505 IPR036318 FAD-binding, type PCMH-like superfamily RAF_RS05505 IPR016169 FAD-binding, type PCMH, subdomain 2 RAF_RS05505 IPR005170 Transporter-associated domain RAF_RS05510 IPR003568 Cytochrome c-type biogenesis protein CcmF RAF_RS05510 IPR003567 Cytochrome c-type biogenesis protein RAF_RS05510 IPR002541 Cytochrome c assembly protein RAF_RS05510 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal RAF_RS05530 IPR036709 Autotransporter beta-domain superfamily RAF_RS05530 IPR006315 Outer membrane autotransporter barrel RAF_RS05530 IPR005546 Autotransporter beta-domain RAF_RS05530 IPR022095 Rickettsia outer membrane protein B RAF_RS05535 IPR003607 HD/PDEase domain RAF_RS05535 IPR007685 RelA/SpoT RAF_RS05535 IPR004811 RelA/SpoT family RAF_RS05535 IPR004095 TGS RAF_RS05535 IPR012675 Beta-grasp domain superfamily RAF_RS05535 IPR033655 RelA, TGS domain RAF_RS05535 IPR012676 TGS-like RAF_RS05535 IPR002912 ACT domain RAF_RS05540 IPR022956 Beta-hexosaminidase, bacterial RAF_RS05540 IPR001764 Glycoside hydrolase, family 3, N-terminal RAF_RS05540 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily RAF_RS05540 IPR017853 Glycoside hydrolase superfamily RAF_RS05540 IPR019800 Glycoside hydrolase, family 3, active site RAF_RS05550 IPR000119 Histone-like DNA-binding protein RAF_RS05550 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily RAF_RS05560 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant RAF_RS05560 IPR024706 Peroxiredoxin, AhpC-type RAF_RS05560 IPR013766 Thioredoxin domain RAF_RS05560 IPR036249 Thioredoxin-like superfamily RAF_RS05570 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05570 IPR003758 Tetraacyldisaccharide 4'-kinase RAF_RS05575 IPR016047 Peptidase M23 RAF_RS05575 IPR011055 Duplicated hybrid motif RAF_RS05575 IPR018392 LysM domain RAF_RS05575 IPR013731 Opacity-associated protein A, N-terminal RAF_RS05590 IPR001679 NAD-dependent DNA ligase RAF_RS05590 IPR036420 BRCT domain superfamily RAF_RS05590 IPR001357 BRCT domain RAF_RS05590 IPR041663 DisA/LigA, helix-hairpin-helix motif RAF_RS05590 IPR012340 Nucleic acid-binding, OB-fold RAF_RS05590 IPR004150 NAD-dependent DNA ligase, OB-fold RAF_RS05590 IPR018239 NAD-dependent DNA ligase, active site RAF_RS05590 IPR033136 NAD-dependent DNA ligase, conserved site RAF_RS05590 IPR010994 RuvA domain 2-like RAF_RS05590 IPR013839 NAD-dependent DNA ligase, adenylation RAF_RS05590 IPR013840 NAD-dependent DNA ligase, N-terminal RAF_RS05595 IPR002616 tRNA-guanine(15) transglycosylase-like RAF_RS05595 IPR036511 Queuine tRNA-ribosyltransferase-like RAF_RS05595 IPR004803 tRNA-guanine transglycosylase RAF_RS05600 IPR007685 RelA/SpoT RAF_RS05600 IPR012676 TGS-like RAF_RS05600 IPR033655 RelA, TGS domain RAF_RS05600 IPR004811 RelA/SpoT family RAF_RS05600 IPR003607 HD/PDEase domain RAF_RS05600 IPR012675 Beta-grasp domain superfamily RAF_RS05600 IPR002912 ACT domain RAF_RS05600 IPR004095 TGS RAF_RS05635 IPR007763 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 RAF_RS05640 IPR012337 Ribonuclease H-like superfamily RAF_RS05640 IPR002156 Ribonuclease H domain RAF_RS05640 IPR036397 Ribonuclease H superfamily RAF_RS05640 IPR022892 Ribonuclease HI RAF_RS05655 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05655 IPR001977 Dephospho-CoA kinase RAF_RS05660 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain RAF_RS05660 IPR006309 DNA polymerase 3, epsilon subunit RAF_RS05660 IPR013520 Exonuclease, RNase T/DNA polymerase III RAF_RS05660 IPR012337 Ribonuclease H-like superfamily RAF_RS05660 IPR036397 Ribonuclease H superfamily RAF_RS05665 IPR002994 Surfeit locus 1/Shy1 RAF_RS05670 IPR014152 DNA helicase subunit AddA RAF_RS05670 IPR014017 UvrD-like DNA helicase, C-terminal RAF_RS05670 IPR000212 DNA helicase, UvrD/REP type RAF_RS05670 IPR034739 UvrD/AddA helicase, N-terminal RAF_RS05670 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05670 IPR011604 Exonuclease, phage-type/RecB, C-terminal RAF_RS05670 IPR014016 UvrD-like helicase, ATP-binding domain RAF_RS05670 IPR011335 Restriction endonuclease type II-like RAF_RS05680 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding RAF_RS05680 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type RAF_RS05680 IPR024925 Malonyl CoA-acyl carrier protein transacylase RAF_RS05680 IPR014043 Acyl transferase RAF_RS05680 IPR001227 Acyl transferase domain superfamily RAF_RS05680 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RAF_RS05785 IPR004667 ADP/ATP carrier protein RAF_RS05805 IPR016169 FAD-binding, type PCMH, subdomain 2 RAF_RS05805 IPR036318 FAD-binding, type PCMH-like superfamily RAF_RS05805 IPR000644 CBS domain RAF_RS05805 IPR005170 Transporter-associated domain RAF_RS05810 IPR020549 Endoribonuclease YbeY, conserved site RAF_RS05810 IPR023091 Metalloprotease catalytic domain superfamily, predicted RAF_RS05810 IPR002036 Endoribonuclease YbeY RAF_RS05825 IPR007197 Radical SAM RAF_RS05825 IPR003698 Lipoyl synthase RAF_RS05825 IPR031691 Lipoyl synthase, N-terminal RAF_RS05825 IPR013785 Aldolase-type TIM barrel RAF_RS05825 IPR006638 Elp3/MiaB/NifB RAF_RS05830 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RAF_RS05830 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RAF_RS05830 IPR001085 Serine hydroxymethyltransferase RAF_RS05830 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site RAF_RS05830 IPR039429 Serine hydroxymethyltransferase-like domain RAF_RS05830 IPR015424 Pyridoxal phosphate-dependent transferase RAF_RS05835 IPR003140 Phospholipase/carboxylesterase/thioesterase RAF_RS05835 IPR029058 Alpha/Beta hydrolase fold RAF_RS05840 IPR033658 Glutaredoxin, PICOT-like RAF_RS05840 IPR036249 Thioredoxin-like superfamily RAF_RS05840 IPR014434 Monothiol glutaredoxin RAF_RS05840 IPR002109 Glutaredoxin RAF_RS05840 IPR004480 Monothiol glutaredoxin-related RAF_RS05845 IPR011257 DNA glycosylase RAF_RS05845 IPR003265 HhH-GPD domain RAF_RS05845 IPR005759 Endonuclease III RAF_RS05845 IPR004036 Endonuclease III-like, conserved site-2 RAF_RS05845 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif RAF_RS05845 IPR000445 Helix-hairpin-helix motif RAF_RS05845 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal RAF_RS05890 IPR008189 rRNA small subunit methyltransferase I RAF_RS05890 IPR014776 Tetrapyrrole methylase, subdomain 2 RAF_RS05890 IPR014777 Tetrapyrrole methylase, subdomain 1 RAF_RS05890 IPR035996 Tetrapyrrole methylase superfamily RAF_RS05890 IPR018063 SAM-dependent methyltransferase RsmI, conserved site RAF_RS05890 IPR000878 Tetrapyrrole methylase RAF_RS05895 IPR028081 Leucine-binding protein domain RAF_RS05895 IPR028082 Periplasmic binding protein-like I RAF_RS05900 IPR006312 Sec-independent protein translocase protein TatA/E RAF_RS05900 IPR003369 Sec-independent protein translocase protein TatA/B/E RAF_RS05905 IPR007686 YutG/PgpA domain RAF_RS05905 IPR036681 PgpA-like superfamily RAF_RS05905 IPR026037 Phosphatidylglycerophosphatase A RAF_RS05910 IPR018258 Ribosomal protein L21, conserved site RAF_RS05910 IPR028909 Ribosomal protein L21-like RAF_RS05910 IPR001787 Ribosomal protein L21 RAF_RS05910 IPR036164 L21-like superfamily RAF_RS05915 IPR001684 Ribosomal protein L27 RAF_RS05915 IPR018261 Ribosomal protein L27, conserved site RAF_RS05920 IPR018042 Aspartate kinase, conserved site RAF_RS05920 IPR001341 Aspartate kinase RAF_RS05920 IPR036393 Acetylglutamate kinase-like superfamily RAF_RS05920 IPR041740 Aspartokinase catalytic domain RAF_RS05920 IPR001048 Aspartate/glutamate/uridylate kinase RAF_RS05920 IPR005260 Aspartate kinase, monofunctional class RAF_RS05935 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D RAF_RS05935 IPR001279 Metallo-beta-lactamase RAF_RS05935 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RAF_RS05955 IPR011701 Major facilitator superfamily RAF_RS05955 IPR036259 MFS transporter superfamily RAF_RS05955 IPR005828 Major facilitator, sugar transporter-like RAF_RS05955 IPR005829 Sugar transporter, conserved site RAF_RS05955 IPR004736 MFS transporter, metabolite:H symporter RAF_RS05955 IPR020846 Major facilitator superfamily domain RAF_RS05960 IPR036192 Cell division protein ZapA-like superfamily RAF_RS05960 IPR007838 Cell division protein ZapA-like RAF_RS05965 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site RAF_RS05965 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding RAF_RS05965 IPR005728 Rickettsial palindromic element RAF_RS05965 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain RAF_RS05965 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding RAF_RS05965 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS05965 IPR002300 Aminoacyl-tRNA synthetase, class Ia RAF_RS05965 IPR025709 Leucyl-tRNA synthetase, editing domain RAF_RS05965 IPR002302 Leucine-tRNA ligase RAF_RS05970 IPR025194 Domain of unknown function DUF4115 RAF_RS05970 IPR010982 Lambda repressor-like, DNA-binding domain superfamily RAF_RS05975 IPR007780 NAD-glutamate dehydrogenase, bacteria RAF_RS05975 IPR028971 NAD-glutamate dehydrogenase RAF_RS05975 IPR036291 NAD(P)-binding domain superfamily RAF_RS05980 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 RAF_RS05980 IPR025867 MnmE, helical domain RAF_RS05980 IPR018948 GTP-binding protein TrmE, N-terminal RAF_RS05980 IPR005225 Small GTP-binding protein domain RAF_RS05980 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05980 IPR006073 GTP binding domain RAF_RS05980 IPR004520 tRNA modification GTPase MnmE RAF_RS05980 IPR031168 TrmE-type guanine nucleotide-binding domain RAF_RS05980 IPR027368 tRNA modification GTPase MnmE domain 2 RAF_RS05985 IPR020182 Protein of unknown function DUF5460 RAF_RS06005 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06005 IPR003593 AAA+ ATPase domain RAF_RS06005 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain RAF_RS06005 IPR023400 DNA recombination and repair protein RecA, C-terminal RAF_RS06005 IPR020584 DNA recombination/repair protein RecA, conserved site RAF_RS06005 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface RAF_RS06005 IPR013765 DNA recombination and repair protein RecA RAF_RS06010 IPR020904 Short-chain dehydrogenase/reductase, conserved site RAF_RS06010 IPR036291 NAD(P)-binding domain superfamily RAF_RS06010 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase RAF_RS06010 IPR002347 Short-chain dehydrogenase/reductase SDR RAF_RS06015 IPR009081 Phosphopantetheine binding ACP domain RAF_RS06015 IPR003231 Acyl carrier protein (ACP) RAF_RS06015 IPR036736 ACP-like superfamily RAF_RS06020 IPR016039 Thiolase-like RAF_RS06020 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 RAF_RS06020 IPR000794 Beta-ketoacyl synthase RAF_RS06020 IPR018201 Beta-ketoacyl synthase, active site RAF_RS06020 IPR014031 Beta-ketoacyl synthase, C-terminal RAF_RS06020 IPR014030 Beta-ketoacyl synthase, N-terminal RAF_RS06020 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RAF_RS06025 IPR032781 ABC-transporter extension domain RAF_RS06025 IPR003593 AAA+ ATPase domain RAF_RS06025 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06025 IPR017871 ABC transporter, conserved site RAF_RS06025 IPR003439 ABC transporter-like RAF_RS06025 IPR032524 ABC transporter Uup, C-terminal RAF_RS06025 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily RAF_RS06045 IPR008144 Guanylate kinase-like domain RAF_RS06045 IPR017665 Guanylate kinase RAF_RS06045 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06045 IPR005728 Rickettsial palindromic element RAF_RS06045 IPR008145 Guanylate kinase/L-type calcium channel beta subunit RAF_RS06045 IPR020590 Guanylate kinase, conserved site RAF_RS06050 IPR010982 Lambda repressor-like, DNA-binding domain superfamily RAF_RS06050 IPR001387 Cro/C1-type helix-turn-helix domain RAF_RS06060 IPR004753 Cell shape determining protein MreB RAF_RS06075 IPR036737 OmpA-like domain superfamily RAF_RS06075 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal RAF_RS06075 IPR039001 Peptidoglycan-associated lipoprotein RAF_RS06075 IPR006664 Outer membrane protein, bacterial RAF_RS06075 IPR006665 OmpA-like domain RAF_RS06075 IPR006690 Outer membrane protein, OmpA-like, conserved site RAF_RS06080 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding RAF_RS06080 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 RAF_RS06080 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial RAF_RS06080 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS06080 IPR000924 Glutamyl/glutaminyl-tRNA synthetase RAF_RS06080 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain RAF_RS06080 IPR005728 Rickettsial palindromic element RAF_RS06080 IPR033910 Glutamyl-tRNA synthetase RAF_RS06085 IPR016039 Thiolase-like RAF_RS06085 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 RAF_RS06085 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal RAF_RS06085 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RAF_RS06090 IPR002677 Ribosomal protein L32p RAF_RS06090 IPR011332 Zinc-binding ribosomal protein RAF_RS06100 IPR036225 SRP/SRP receptor, N-terminal RAF_RS06100 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain RAF_RS06100 IPR013822 Signal recognition particle SRP54, helical bundle RAF_RS06100 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06100 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily RAF_RS06100 IPR003593 AAA+ ATPase domain RAF_RS06100 IPR004390 Signal-recognition particle receptor FtsY RAF_RS06105 IPR019760 DNA-directed DNA polymerase, family A, conserved site RAF_RS06105 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal RAF_RS06105 IPR020045 DNA polymerase I-like, H3TH domain RAF_RS06105 IPR002421 5'-3' exonuclease, N-terminal RAF_RS06105 IPR018320 DNA polymerase 1 RAF_RS06105 IPR008918 Helix-hairpin-helix motif, class 2 RAF_RS06105 IPR029060 PIN-like domain superfamily RAF_RS06105 IPR001098 DNA-directed DNA polymerase, family A, palm domain RAF_RS06105 IPR036397 Ribonuclease H superfamily RAF_RS06105 IPR036279 5'-3' exonuclease, C-terminal domain superfamily RAF_RS06105 IPR002298 DNA polymerase A RAF_RS06110 IPR002133 S-adenosylmethionine synthetase RAF_RS06110 IPR022630 S-adenosylmethionine synthetase, C-terminal RAF_RS06110 IPR022631 S-adenosylmethionine synthetase, conserved site RAF_RS06110 IPR022628 S-adenosylmethionine synthetase, N-terminal RAF_RS06110 IPR022629 S-adenosylmethionine synthetase, central domain RAF_RS06110 IPR022636 S-adenosylmethionine synthetase superfamily RAF_RS06115 IPR022628 S-adenosylmethionine synthetase, N-terminal RAF_RS06115 IPR022629 S-adenosylmethionine synthetase, central domain RAF_RS06115 IPR022630 S-adenosylmethionine synthetase, C-terminal RAF_RS06115 IPR022631 S-adenosylmethionine synthetase, conserved site RAF_RS06115 IPR022636 S-adenosylmethionine synthetase superfamily RAF_RS06115 IPR002133 S-adenosylmethionine synthetase RAF_RS06135 IPR003141 Polymerase/histidinol phosphatase, N-terminal RAF_RS06135 IPR029460 DNA polymerase, helix-hairpin-helix motif RAF_RS06135 IPR040982 DNA polymerase III alpha subunit finger domain RAF_RS06135 IPR004013 PHP domain RAF_RS06135 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain RAF_RS06135 IPR004805 DNA polymerase III, alpha subunit RAF_RS06135 IPR016195 Polymerase/histidinol phosphatase-like RAF_RS06135 IPR041931 Bacterial DNA polymerase III alpha subunit, thumb domain RAF_RS06140 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type RAF_RS06140 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal RAF_RS06140 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation RAF_RS06140 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily RAF_RS06140 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily RAF_RS06140 IPR036291 NAD(P)-binding domain superfamily RAF_RS06140 IPR017476 UDP-glucose/GDP-mannose dehydrogenase RAF_RS06140 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal RAF_RS06150 IPR036259 MFS transporter superfamily RAF_RS06150 IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1 RAF_RS06150 IPR011701 Major facilitator superfamily RAF_RS06155 IPR019820 Sec-independent periplasmic protein translocase, conserved site RAF_RS06155 IPR002033 Sec-independent periplasmic protein translocase TatC RAF_RS06160 IPR033729 Serine-tRNA ligase catalytic core domain RAF_RS06160 IPR042103 Serine-tRNA synthetase, type1, N-terminal domain superfamily RAF_RS06160 IPR002317 Serine-tRNA ligase, type1 RAF_RS06160 IPR015866 Serine-tRNA synthetase, type1, N-terminal RAF_RS06160 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) RAF_RS06160 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm RAF_RS06160 IPR006195 Aminoacyl-tRNA synthetase, class II RAF_RS06165 IPR004346 CagE, TrbE, VirB component of type IV transporter system RAF_RS06165 IPR003593 AAA+ ATPase domain RAF_RS06165 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06165 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain RAF_RS06175 IPR005496 Integral membrane protein TerC RAF_RS06175 IPR022369 Integral membrane protein TerC, riboswitch-linked RAF_RS06180 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel RAF_RS06185 IPR025714 Methyltransferase domain RAF_RS06185 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS06185 IPR018773 Methyltransferase regulatory domain, predicted RAF_RS06190 IPR009387 Toxin HigB-2 RAF_RS06195 IPR018117 DNA methylase, C-5 cytosine-specific, active site RAF_RS06195 IPR001525 C-5 cytosine methyltransferase RAF_RS06195 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS06195 IPR010982 Lambda repressor-like, DNA-binding domain superfamily RAF_RS06195 IPR001387 Cro/C1-type helix-turn-helix domain RAF_RS06195 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site RAF_RS06200 IPR042106 NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ RAF_RS06200 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 RAF_RS06205 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K RAF_RS06205 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like RAF_RS06210 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup RAF_RS06210 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 RAF_RS06210 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal RAF_RS06210 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit RAF_RS06215 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit RAF_RS06215 IPR010227 NADH-quinone oxidoreductase, chain M/4 RAF_RS06215 IPR003918 NADH:ubiquinone oxidoreductase RAF_RS06220 IPR005895 ABC transporter, haem export, CcmA RAF_RS06220 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06220 IPR003593 AAA+ ATPase domain RAF_RS06220 IPR003439 ABC transporter-like RAF_RS06225 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RAF_RS06225 IPR010226 NADH-quinone oxidoreductase, chain I RAF_RS06225 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RAF_RS06230 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site RAF_RS06230 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H RAF_RS06235 IPR006656 Molybdopterin oxidoreductase RAF_RS06235 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain RAF_RS06235 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site RAF_RS06235 IPR010228 NADH:ubiquinone oxidoreductase, subunit G RAF_RS06235 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding RAF_RS06235 IPR015405 NADH-quinone oxidoreductase, chain G, C-terminal RAF_RS06235 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain RAF_RS06235 IPR036010 2Fe-2S ferredoxin-like superfamily RAF_RS06245 IPR006249 Aconitase/Iron-responsive element-binding protein 2 RAF_RS06245 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 RAF_RS06245 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain RAF_RS06245 IPR018136 Aconitase family, 4Fe-4S cluster binding site RAF_RS06245 IPR036008 Aconitase, iron-sulfur domain RAF_RS06245 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RAF_RS06245 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain RAF_RS06250 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit RAF_RS06250 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal RAF_RS06250 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal RAF_RS06255 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal RAF_RS06255 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site RAF_RS06255 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain RAF_RS06255 IPR005722 ATP synthase, F1 complex, beta subunit RAF_RS06255 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain RAF_RS06255 IPR003593 AAA+ ATPase domain RAF_RS06255 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06255 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily RAF_RS06260 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily RAF_RS06260 IPR000131 ATP synthase, F1 complex, gamma subunit RAF_RS06260 IPR022436 Rickettsia palindromic element RPE2 RAF_RS06265 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06265 IPR005294 ATP synthase, F1 complex, alpha subunit RAF_RS06265 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain RAF_RS06265 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily RAF_RS06265 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain RAF_RS06265 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily RAF_RS06265 IPR000793 ATP synthase, alpha subunit, C-terminal RAF_RS06265 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily RAF_RS06265 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site RAF_RS06265 IPR033732 ATP synthase, F1 complex, alpha subunit nucleotide-binding domain RAF_RS06270 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily RAF_RS06270 IPR000711 ATPase, OSCP/delta subunit RAF_RS06275 IPR006258 Dihydrolipoamide dehydrogenase RAF_RS06275 IPR036188 FAD/NAD(P)-binding domain superfamily RAF_RS06275 IPR023753 FAD/NAD(P)-binding domain RAF_RS06275 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily RAF_RS06275 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site RAF_RS06275 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RAF_RS06275 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I RAF_RS06280 IPR009078 Ferritin-like superfamily RAF_RS06280 IPR023188 DNA-binding protein Dps, conserved site RAF_RS06280 IPR002177 DNA-binding protein Dps RAF_RS06280 IPR012347 Ferritin-like RAF_RS06280 IPR008331 Ferritin/DPS protein domain RAF_RS06305 IPR001460 Penicillin-binding protein, transpeptidase RAF_RS06305 IPR012338 Beta-lactamase/transpeptidase-like RAF_RS06305 IPR002137 Beta-lactamase, class-D active site RAF_RS06310 IPR012338 Beta-lactamase/transpeptidase-like RAF_RS06310 IPR001264 Glycosyl transferase, family 51 RAF_RS06310 IPR023346 Lysozyme-like domain superfamily RAF_RS06310 IPR036950 Penicillin binding protein transglycosylase domain RAF_RS06310 IPR031376 Penicillin-binding protein, OB-like domain RAF_RS06310 IPR001460 Penicillin-binding protein, transpeptidase RAF_RS06315 IPR006638 Elp3/MiaB/NifB RAF_RS06315 IPR002792 TRAM domain RAF_RS06315 IPR007197 Radical SAM RAF_RS06315 IPR023404 Radical SAM, alpha/beta horseshoe RAF_RS06315 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB RAF_RS06315 IPR038135 Methylthiotransferase, N-terminal domain superfamily RAF_RS06315 IPR013848 Methylthiotransferase, N-terminal RAF_RS06315 IPR020612 Methylthiotransferase, conserved site RAF_RS06315 IPR005839 Methylthiotransferase RAF_RS06340 IPR006153 Cation/H+ exchanger RAF_RS06340 IPR003148 Regulator of K+ conductance, N-terminal RAF_RS06340 IPR036291 NAD(P)-binding domain superfamily RAF_RS06340 IPR038770 Sodium/solute symporter superfamily RAF_RS06340 IPR020884 Glutathione-regulated potassium-efflux system protein KefB RAF_RS06340 IPR004771 K+/H+ exchanger RAF_RS06345 IPR004394 Protein Iojap/ribosomal silencing factor RsfS RAF_RS06350 IPR002634 BolA protein RAF_RS06350 IPR036065 BolA-like superfamily RAF_RS06355 IPR005546 Autotransporter beta-domain RAF_RS06355 IPR006315 Outer membrane autotransporter barrel RAF_RS06355 IPR036709 Autotransporter beta-domain superfamily RAF_RS06360 IPR006315 Outer membrane autotransporter barrel RAF_RS06360 IPR036709 Autotransporter beta-domain superfamily RAF_RS06360 IPR005546 Autotransporter beta-domain RAF_RS06430 IPR004368 Translation initiation factor IF-1 RAF_RS06430 IPR012340 Nucleic acid-binding, OB-fold RAF_RS06430 IPR006196 RNA-binding domain, S1, IF1 type RAF_RS06435 IPR029001 Inosine triphosphate pyrophosphatase-like RAF_RS06435 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein RAF_RS06440 IPR037187 DksA, N-terminal domain superfamily RAF_RS06440 IPR000962 Zinc finger, DksA/TraR C4-type RAF_RS06440 IPR020458 Zinc finger, DksA/TraR C4-type conserved site RAF_RS06440 IPR012784 RNA polymerase-binding transcription factor DksA RAF_RS06445 IPR010998 Integrase/recombinase, N-terminal RAF_RS06445 IPR002104 Integrase, catalytic domain RAF_RS06445 IPR013762 Integrase-like, catalytic domain superfamily RAF_RS06445 IPR004107 Integrase, SAM-like, N-terminal RAF_RS06445 IPR023009 Tyrosine recombinase XerC/XerD RAF_RS06445 IPR011010 DNA breaking-rejoining enzyme, catalytic core RAF_RS06455 IPR001736 Phospholipase D/Transphosphatidylase RAF_RS06455 IPR025202 Phospholipase D-like domain RAF_RS06465 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain RAF_RS06465 IPR010963 Poly(R)-hydroxyalkanoic acid synthase, class I RAF_RS06465 IPR029058 Alpha/Beta hydrolase fold RAF_RS06470 IPR002830 UbiD decarboxylyase family RAF_RS06480 IPR036709 Autotransporter beta-domain superfamily RAF_RS06480 IPR005546 Autotransporter beta-domain RAF_RS06480 IPR006315 Outer membrane autotransporter barrel RAF_RS06490 IPR025199 DNA translocase FtsK, 4TM region RAF_RS06490 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06490 IPR002543 FtsK domain RAF_RS06490 IPR018541 FtsK gamma domain RAF_RS06490 IPR036390 Winged helix DNA-binding domain superfamily RAF_RS06490 IPR036388 Winged helix-like DNA-binding domain superfamily RAF_RS06490 IPR041027 FtsK alpha domain RAF_RS06500 IPR000994 Peptidase M24 RAF_RS06500 IPR036005 Creatinase/aminopeptidase-like RAF_RS06500 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 RAF_RS06500 IPR001714 Peptidase M24, methionine aminopeptidase RAF_RS06505 IPR020891 Uncharacterised protein family UPF0758, conserved site RAF_RS06505 IPR037518 MPN domain RAF_RS06505 IPR025657 RadC-like JAB domain RAF_RS06505 IPR010994 RuvA domain 2-like RAF_RS06505 IPR001405 Uncharacterised protein family UPF0758 RAF_RS06510 IPR037518 MPN domain RAF_RS06510 IPR010994 RuvA domain 2-like RAF_RS06510 IPR025657 RadC-like JAB domain RAF_RS06510 IPR001405 Uncharacterised protein family UPF0758 RAF_RS06510 IPR020891 Uncharacterised protein family UPF0758, conserved site RAF_RS06515 IPR000715 Glycosyl transferase, family 4 RAF_RS06515 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site RAF_RS06520 IPR007922 Protein of unknown function DUF721/UPF0232 RAF_RS06520 IPR016507 Uncharacterised conserved protein UCP007061 RAF_RS06525 IPR027385 Outer membrane protein beta-barrel domain RAF_RS06525 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel RAF_RS06530 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel RAF_RS06530 IPR027385 Outer membrane protein beta-barrel domain RAF_RS06535 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RAF_RS06535 IPR000813 7Fe ferredoxin RAF_RS06535 IPR022569 Ferredoxin, C-terminal RAF_RS06535 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RAF_RS06540 IPR002541 Cytochrome c assembly protein RAF_RS06540 IPR003557 Cytochrome c-type biogenesis protein CcmC RAF_RS06545 IPR028883 tRNA-specific adenosine deaminase RAF_RS06545 IPR002125 Cytidine and deoxycytidylate deaminase domain RAF_RS06545 IPR016192 APOBEC/CMP deaminase, zinc-binding RAF_RS06545 IPR016193 Cytidine deaminase-like RAF_RS06550 IPR027470 Cation efflux protein, cytoplasmic domain RAF_RS06550 IPR002524 Cation efflux protein RAF_RS06550 IPR027469 Cation efflux transmembrane domain superfamily RAF_RS06550 IPR036837 Cation efflux protein, cytoplasmic domain superfamily RAF_RS06555 IPR032635 Surface antigen domain RAF_RS06555 IPR008816 Glycine zipper 2TM domain RAF_RS06555 IPR016364 Surface antigen, Rickettsia type RAF_RS06560 IPR008914 Phosphatidylethanolamine-binding protein RAF_RS06560 IPR036610 PEBP-like superfamily RAF_RS06560 IPR005247 YbhB/YbcL RAF_RS06565 IPR003593 AAA+ ATPase domain RAF_RS06565 IPR017882 Zinc import ATP-binding protein ZnuC RAF_RS06565 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06565 IPR017871 ABC transporter, conserved site RAF_RS06565 IPR003439 ABC transporter-like RAF_RS06595 IPR041102 UvrA, interaction domain RAF_RS06595 IPR041552 UvrA DNA-binding domain RAF_RS06595 IPR004602 UvrABC system subunit A RAF_RS06595 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06595 IPR017871 ABC transporter, conserved site RAF_RS06595 IPR003439 ABC transporter-like RAF_RS06600 IPR012340 Nucleic acid-binding, OB-fold RAF_RS06600 IPR000424 Primosome PriB/single-strand DNA-binding RAF_RS06600 IPR011344 Single-stranded DNA-binding protein RAF_RS06630 IPR036591 YggU-like superfamily RAF_RS06630 IPR003746 Protein of unknown function DUF167 RAF_RS06635 IPR020568 Ribosomal protein S5 domain 2-type fold RAF_RS06635 IPR003594 Histidine kinase/HSP90-like ATPase RAF_RS06635 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAF_RS06635 IPR020575 Heat shock protein Hsp90, N-terminal RAF_RS06635 IPR001404 Heat shock protein Hsp90 family RAF_RS06635 IPR037196 HSP90, C-terminal domain RAF_RS06635 IPR019805 Heat shock protein Hsp90, conserved site RAF_RS06640 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site RAF_RS06640 IPR015421 Pyridoxal phosphate-dependent transferase, major domain RAF_RS06640 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 RAF_RS06640 IPR015424 Pyridoxal phosphate-dependent transferase RAF_RS06640 IPR004839 Aminotransferase, class I/classII RAF_RS06640 IPR010961 Tetrapyrrole biosynthesis, 5-aminolevulinic acid synthase RAF_RS06650 IPR005215 Trigger factor RAF_RS06650 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain RAF_RS06650 IPR008881 Trigger factor, ribosome-binding, bacterial RAF_RS06650 IPR036611 Trigger factor ribosome-binding domain superfamily RAF_RS06650 IPR037041 Trigger factor, C-terminal domain superfamily RAF_RS06650 IPR008880 Trigger factor, C-terminal RAF_RS06650 IPR027304 Trigger factor/SurA domain superfamily RAF_RS06655 IPR036726 GTP1/OBG domain superfamily RAF_RS06655 IPR006169 GTP1/OBG domain RAF_RS06655 IPR006074 GTP1/OBG, conserved site RAF_RS06655 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06655 IPR014100 GTP-binding protein Obg/CgtA RAF_RS06655 IPR031167 OBG-type guanine nucleotide-binding (G) domain RAF_RS06655 IPR006073 GTP binding domain RAF_RS06655 IPR035101 GTP-binding protein, Obg-type RAF_RS06660 IPR016143 Citrate synthase-like, small alpha subdomain RAF_RS06660 IPR016142 Citrate synthase-like, large alpha subdomain RAF_RS06660 IPR002020 Citrate synthase RAF_RS06660 IPR019810 Citrate synthase active site RAF_RS06660 IPR024176 Citrate synthase, bacterial-type RAF_RS06660 IPR036969 Citrate synthase superfamily RAF_RS06660 IPR010953 Citrate synthase, type I RAF_RS06670 IPR005273 Uracil-DNA glycosylase family 4 RAF_RS06670 IPR005122 Uracil-DNA glycosylase-like RAF_RS06670 IPR036895 Uracil-DNA glycosylase-like domain superfamily RAF_RS06675 IPR020103 Pseudouridine synthase, catalytic domain superfamily RAF_RS06675 IPR006145 Pseudouridine synthase, RsuA/RluA RAF_RS06675 IPR002942 RNA-binding S4 domain RAF_RS06675 IPR036986 RNA-binding S4 domain superfamily RAF_RS06675 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site RAF_RS06675 IPR006225 Pseudouridine synthase, RluC/RluD RAF_RS06700 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS06700 IPR007848 Methyltransferase small domain RAF_RS06700 IPR040758 Release factor glutamine methyltransferase, N-terminal domain RAF_RS06700 IPR004556 Methyltransferase HemK-like RAF_RS06700 IPR002052 DNA methylase, N-6 adenine-specific, conserved site RAF_RS06700 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific RAF_RS06700 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type RAF_RS06705 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily RAF_RS06705 IPR005145 Putative GTP-binding controlling metal-binding domain RAF_RS06705 IPR038385 Threonylcarbamoyl-AMP synthase, C-terminal domain superfamily RAF_RS06705 IPR010923 tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 RAF_RS06705 IPR006070 YrdC-like domain RAF_RS06710 IPR015944 Glycine-tRNA ligase, beta subunit RAF_RS06710 IPR006194 Glycine-tRNA synthetase, heterodimeric RAF_RS06710 IPR008909 DALR anticodon binding RAF_RS06715 IPR006194 Glycine-tRNA synthetase, heterodimeric RAF_RS06715 IPR002310 Glycine-tRNA ligase, alpha subunit RAF_RS06720 IPR002716 PIN domain RAF_RS06720 IPR022907 VapC family RAF_RS06720 IPR029060 PIN-like domain superfamily RAF_RS06730 IPR003828 Epoxyqueuosine reductase QueH RAF_RS06740 IPR020180 Uncharacterised protein family RP853 RAF_RS06745 IPR020135 Uncharacterised protein family RP854 RAF_RS06755 IPR003156 DHHA1 domain RAF_RS06755 IPR009000 Translation protein, beta-barrel domain superfamily RAF_RS06755 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria RAF_RS06755 IPR012947 Threonyl/alanyl tRNA synthetase, SAD RAF_RS06755 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal RAF_RS06755 IPR018165 Alanyl-tRNA synthetase, class IIc, core domain RAF_RS06755 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily RAF_RS06755 IPR002318 Alanine-tRNA ligase, class IIc RAF_RS06755 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily RAF_RS06760 IPR020095 Pseudouridine synthase I, TruA, C-terminal RAF_RS06760 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain RAF_RS06760 IPR001406 Pseudouridine synthase I, TruA RAF_RS06760 IPR020103 Pseudouridine synthase, catalytic domain superfamily RAF_RS06765 IPR007630 RNA polymerase sigma-70 region 4 RAF_RS06765 IPR028630 RNA polymerase sigma factor RpoD RAF_RS06765 IPR014284 RNA polymerase sigma-70 like domain RAF_RS06765 IPR012760 RNA polymerase sigma factor RpoD, C-terminal RAF_RS06765 IPR013324 RNA polymerase sigma factor, region 3/4-like RAF_RS06765 IPR013325 RNA polymerase sigma factor, region 2 RAF_RS06765 IPR042189 Sigma-70 factor, region 1.1 superfamily RAF_RS06765 IPR007127 RNA polymerase sigma factor 70, region 1.1 RAF_RS06765 IPR007631 RNA polymerase sigma factor 70, non-essential domain RAF_RS06765 IPR000943 RNA polymerase sigma-70 RAF_RS06765 IPR009042 RNA polymerase sigma-70 region 1.2 RAF_RS06765 IPR007627 RNA polymerase sigma-70 region 2 RAF_RS06765 IPR007624 RNA polymerase sigma-70 region 3 RAF_RS06765 IPR036388 Winged helix-like DNA-binding domain superfamily RAF_RS06770 IPR034151 Bacterial DnaG primase, TOPRIM domain RAF_RS06770 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily RAF_RS06770 IPR006295 DNA primase, DnaG RAF_RS06770 IPR036977 DNA Primase, CHC2-type zinc finger RAF_RS06770 IPR030846 DNA primase DnaG, bacteria RAF_RS06770 IPR006171 TOPRIM domain RAF_RS06770 IPR002694 Zinc finger, CHC2-type RAF_RS06770 IPR013264 DNA primase, catalytic core, N-terminal RAF_RS06780 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily RAF_RS06780 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal RAF_RS06780 IPR023459 Transcription elongation factor GreA/GreB family RAF_RS06780 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal RAF_RS06780 IPR028624 Transcription elongation factor GreA/GreB RAF_RS06780 IPR006359 Transcription elongation factor GreA RAF_RS06780 IPR018151 Transcription elongation factor, GreA/GreB, conserved site RAF_RS06780 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily RAF_RS06785 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal RAF_RS06790 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RAF_RS06790 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RAF_RS06790 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 RAF_RS06790 IPR036291 NAD(P)-binding domain superfamily RAF_RS06795 IPR029046 Lipoprotein localisation LolA/LolB/LppX RAF_RS06795 IPR004564 Outer membrane lipoprotein carrier protein LolA-like RAF_RS06800 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06800 IPR003593 AAA+ ATPase domain RAF_RS06800 IPR012763 DNA polymerase III, subunit gamma/ tau RAF_RS06800 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal RAF_RS06800 IPR022754 DNA polymerase III, gamma subunit, domain III RAF_RS06805 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily RAF_RS06805 IPR004401 Nucleoid-associated protein YbaB/EbfC family RAF_RS06810 IPR011969 Clan AA aspartic peptidase, C-terminal RAF_RS06810 IPR021109 Aspartic peptidase domain superfamily RAF_RS06810 IPR001969 Aspartic peptidase, active site RAF_RS06810 IPR034122 Retropepsin-like domain, bacterial RAF_RS06830 IPR003593 AAA+ ATPase domain RAF_RS06830 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06830 IPR017871 ABC transporter, conserved site RAF_RS06830 IPR003439 ABC transporter-like RAF_RS06830 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type RAF_RS06845 IPR026262 Antitoxin DinJ RAF_RS06845 IPR007337 RelB antitoxin/Antitoxin DinJ RAF_RS06845 IPR013321 Arc-type ribbon-helix-helix RAF_RS06850 IPR005495 Permease LptG/LptF-related RAF_RS06855 IPR007459 DNA polymerase III chi subunit, HolC RAF_RS06855 IPR036768 DNA polymerase III subunit chi superfamily RAF_RS06865 IPR036264 Bacterial exopeptidase dimerisation domain RAF_RS06865 IPR011650 Peptidase M20, dimerisation domain RAF_RS06865 IPR002933 Peptidase M20 RAF_RS06865 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria RAF_RS06865 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site RAF_RS06900 IPR004670 Na+/H+ antiporter NhaA RAF_RS06900 IPR023171 Na/H antiporter domain superfamily RAF_RS06905 IPR023171 Na/H antiporter domain superfamily RAF_RS06905 IPR004670 Na+/H+ antiporter NhaA RAF_RS06915 IPR020605 Octanoyltransferase, conserved site RAF_RS06915 IPR000544 Octanoyltransferase RAF_RS06915 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain RAF_RS06920 IPR036366 PGBD superfamily RAF_RS06920 IPR036365 PGBD-like superfamily RAF_RS06920 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily RAF_RS06920 IPR002502 N-acetylmuramoyl-L-alanine amidase domain RAF_RS06930 IPR023803 Ribosomal protein S16 domain superfamily RAF_RS06930 IPR020592 Ribosomal protein S16, conserved site RAF_RS06930 IPR000307 Ribosomal protein S16 RAF_RS06935 IPR011332 Zinc-binding ribosomal protein RAF_RS06935 IPR001705 Ribosomal protein L33 RAF_RS06935 IPR038584 Ribosomal protein L33 superfamily RAF_RS06935 IPR018264 Ribosomal protein L33, conserved site RAF_RS06940 IPR037198 MutL, C-terminal domain superfamily RAF_RS06940 IPR013507 DNA mismatch repair protein, S5 domain 2-like RAF_RS06940 IPR014762 DNA mismatch repair, conserved site RAF_RS06940 IPR020667 DNA mismatch repair protein, MutL RAF_RS06940 IPR002099 DNA mismatch repair protein family, N-terminal RAF_RS06940 IPR042121 MutL, C-terminal domain, regulatory subdomain RAF_RS06940 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RAF_RS06940 IPR042120 MutL, C-terminal domain, dimerisation subdomain RAF_RS06940 IPR014790 MutL, C-terminal, dimerisation RAF_RS06940 IPR038973 DNA mismatch repair protein MutL/Mlh/Pms RAF_RS06940 IPR020568 Ribosomal protein S5 domain 2-type fold RAF_RS06940 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAF_RS06945 IPR011294 3-hydroxybutyrate dehydrogenase RAF_RS06945 IPR036291 NAD(P)-binding domain superfamily RAF_RS06945 IPR020904 Short-chain dehydrogenase/reductase, conserved site RAF_RS06945 IPR002347 Short-chain dehydrogenase/reductase SDR RAF_RS06955 IPR005829 Sugar transporter, conserved site RAF_RS06955 IPR036259 MFS transporter superfamily RAF_RS06955 IPR005828 Major facilitator, sugar transporter-like RAF_RS06955 IPR020846 Major facilitator superfamily domain RAF_RS06955 IPR036292 Proline/betaine transporter ProP, C-terminal RAF_RS06955 IPR015041 Osmosensory transporter coiled coil RAF_RS06955 IPR004736 MFS transporter, metabolite:H symporter RAF_RS06960 IPR001260 Coproporphyrinogen III oxidase, aerobic RAF_RS06960 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily RAF_RS06960 IPR018375 Coproporphyrinogen III oxidase, conserved site RAF_RS06975 IPR005265 Protoporphyrinogen oxidase HemJ-like RAF_RS06980 IPR033659 Ferrochelatase, N-terminal RAF_RS06980 IPR001015 Ferrochelatase RAF_RS06980 IPR019772 Ferrochelatase, active site RAF_RS06980 IPR033644 Ferrochelatase, C-terminal RAF_RS06985 IPR000257 Uroporphyrinogen decarboxylase (URO-D) RAF_RS06985 IPR006361 Uroporphyrinogen decarboxylase HemE RAF_RS06985 IPR038071 UROD/MetE-like superfamily RAF_RS07095 IPR022438 Rickettsia palindromic element RPE5 RAF_RS07095 IPR036908 RlpA-like domain superfamily RAF_RS07095 IPR034718 Endolytic peptidoglycan transglycosylase RlpA RAF_RS07095 IPR005728 Rickettsial palindromic element RAF_RS07095 IPR012997 Rare lipoprotein A RAF_RS07095 IPR009009 RlpA-like protein, double-psi beta-barrel domain