locus-tag class description RAF_RS00005 PF03618 Kinase/pyrophosphorylase RAF_RS00010 PF00085 Thioredoxin RAF_RS00015 PF14524 Wzt C-terminal domain RAF_RS00015 PF00005 ABC transporter RAF_RS00020 PF01061 ABC-2 type transporter RAF_RS00025 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAF_RS00040 PF00132 Bacterial transferase hexapeptide (six repeats) RAF_RS00040 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RAF_RS00045 PF07977 FabA-like domain RAF_RS00050 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD RAF_RS00050 PF00132 Bacterial transferase hexapeptide (six repeats) RAF_RS00060 PF01207 Dihydrouridine synthase (Dus) RAF_RS00075 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE RAF_RS00080 PF01297 Zinc-uptake complex component A periplasmic RAF_RS00085 PF01743 Poly A polymerase head domain RAF_RS00085 PF12627 Probable RNA and SrmB- binding site of polymerase A RAF_RS00085 PF12626 Polymerase A arginine-rich C-terminus RAF_RS00110 PF03797 Autotransporter beta-domain RAF_RS00140 PF00430 ATP synthase B/B' CF(0) RAF_RS00145 PF00430 ATP synthase B/B' CF(0) RAF_RS00150 PF00137 ATP synthase subunit C RAF_RS00155 PF00119 ATP synthase A chain RAF_RS00160 PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter RAF_RS00165 PF13462 Thioredoxin RAF_RS00175 PF10119 Predicted methyltransferase regulatory domain RAF_RS00175 PF13847 Methyltransferase domain RAF_RS00180 PF02463 RecF/RecN/SMC N terminal domain RAF_RS00185 PF00186 Dihydrofolate reductase RAF_RS00190 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RAF_RS00190 PF00809 Pterin binding enzyme RAF_RS00195 PF00809 Pterin binding enzyme RAF_RS00200 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RAF_RS00200 PF00809 Pterin binding enzyme RAF_RS00210 PF17372 Family of unknown function (DUF5394) RAF_RS00235 PF02622 Uncharacterized ACR, COG1678 RAF_RS00255 PF10871 Protein of unknown function (DUF2748) RAF_RS00305 PF10431 C-terminal, D2-small domain, of ClpB protein RAF_RS00305 PF07724 AAA domain (Cdc48 subfamily) RAF_RS00305 PF17871 AAA lid domain RAF_RS00305 PF02861 Clp amino terminal domain, pathogenicity island component RAF_RS00305 PF00004 ATPase family associated with various cellular activities (AAA) RAF_RS00310 PF17462 Family of unknown function (DUF5424) RAF_RS00315 PF00814 Glycoprotease family RAF_RS00335 PF01250 Ribosomal protein S6 RAF_RS00340 PF01084 Ribosomal protein S18 RAF_RS00345 PF01281 Ribosomal protein L9, N-terminal domain RAF_RS00345 PF03948 Ribosomal protein L9, C-terminal domain RAF_RS00350 PF01171 PP-loop family RAF_RS00355 PF17862 AAA+ lid domain RAF_RS00355 PF00004 ATPase family associated with various cellular activities (AAA) RAF_RS00355 PF06480 FtsH Extracellular RAF_RS00355 PF01434 Peptidase family M41 RAF_RS00360 PF00145 C-5 cytosine-specific DNA methylase RAF_RS00365 PF13085 2Fe-2S iron-sulfur cluster binding domain RAF_RS00375 PF16198 tRNA pseudouridylate synthase B C-terminal domain RAF_RS00375 PF01509 TruB family pseudouridylate synthase (N terminal domain) RAF_RS00380 PF01790 Prolipoprotein diacylglyceryl transferase RAF_RS00385 PF00924 Mechanosensitive ion channel RAF_RS00390 PF02096 60Kd inner membrane protein RAF_RS00390 PF14849 YidC periplasmic domain RAF_RS00395 PF01066 CDP-alcohol phosphatidyltransferase RAF_RS00420 PF09992 Phosphodiester glycosidase RAF_RS00425 PF01327 Polypeptide deformylase RAF_RS00430 PF03219 TLC ATP/ADP transporter RAF_RS00435 PF07690 Major Facilitator Superfamily RAF_RS00440 PF00334 Nucleoside diphosphate kinase RAF_RS00445 PF01134 Glucose inhibited division protein A RAF_RS00445 PF13932 GidA associated domain RAF_RS00450 PF02527 rRNA small subunit methyltransferase G RAF_RS00455 PF13614 AAA domain RAF_RS00460 PF02195 ParB-like nuclease domain RAF_RS00460 PF17762 HTH domain found in ParB protein RAF_RS00465 PF00005 ABC transporter RAF_RS00465 PF12848 ABC transporter RAF_RS00470 PF10878 Protein of unknown function (DUF2672) RAF_RS00475 PF00793 DAHP synthetase I family RAF_RS00485 PF01521 Iron-sulphur cluster biosynthesis RAF_RS00490 PF13286 Phosphohydrolase-associated domain RAF_RS00490 PF01966 HD domain RAF_RS00495 PF05746 DALR anticodon binding domain RAF_RS00495 PF00750 tRNA synthetases class I (R) RAF_RS00495 PF03485 Arginyl tRNA synthetase N terminal domain RAF_RS00500 PF05036 Sporulation related domain RAF_RS00505 PF00521 DNA gyrase/topoisomerase IV, subunit A RAF_RS00505 PF03989 DNA gyrase C-terminal domain, beta-propeller RAF_RS00515 PF13609 Gram-negative porin RAF_RS00520 PF00692 dUTPase RAF_RS00525 PF02556 Preprotein translocase subunit SecB RAF_RS00530 PF00072 Response regulator receiver domain RAF_RS00530 PF00486 Transcriptional regulatory protein, C terminal RAF_RS00535 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term RAF_RS00535 PF14489 QueF-like protein RAF_RS00545 PF02233 NAD(P) transhydrogenase beta subunit RAF_RS00550 PF03922 OmpW family RAF_RS00555 PF00892 EamA-like transporter family RAF_RS00560 PF07690 Major Facilitator Superfamily RAF_RS00575 PF03840 Preprotein translocase SecG subunit RAF_RS00580 PF03797 Autotransporter beta-domain RAF_RS00585 PF09190 DALR domain RAF_RS00585 PF01406 tRNA synthetases class I (C) catalytic domain RAF_RS00590 PF00318 Ribosomal protein S2 RAF_RS00595 PF00889 Elongation factor TS RAF_RS00615 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) RAF_RS00620 PF04028 Domain of unknown function (DUF374) RAF_RS00625 PF00155 Aminotransferase class I and II RAF_RS00635 PF04333 MlaA lipoprotein RAF_RS00645 PF14572 Phosphoribosyl synthetase-associated domain RAF_RS00645 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RAF_RS00650 PF14572 Phosphoribosyl synthetase-associated domain RAF_RS00650 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RAF_RS00655 PF01168 Alanine racemase, N-terminal domain RAF_RS00655 PF00842 Alanine racemase, C-terminal domain RAF_RS00660 PF02405 Permease MlaE RAF_RS00665 PF00005 ABC transporter RAF_RS00670 PF17629 Family of unknown function (DUF5510) RAF_RS00705 PF00830 Ribosomal L28 family RAF_RS00710 PF01197 Ribosomal protein L31 RAF_RS00720 PF01926 50S ribosome-binding GTPase RAF_RS00725 PF00696 Amino acid kinase family RAF_RS00735 PF03135 CagE, TrbE, VirB family, component of type IV transporter system RAF_RS00740 PF04610 TrbL/VirB6 plasmid conjugal transfer protein RAF_RS00750 PF04610 TrbL/VirB6 plasmid conjugal transfer protein RAF_RS00755 PF04610 TrbL/VirB6 plasmid conjugal transfer protein RAF_RS00760 PF04610 TrbL/VirB6 plasmid conjugal transfer protein RAF_RS00780 PF01746 tRNA (Guanine-1)-methyltransferase RAF_RS00785 PF01245 Ribosomal protein L19 RAF_RS00790 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) RAF_RS00795 PF07549 SecD/SecF GG Motif RAF_RS00795 PF02355 Protein export membrane protein RAF_RS00800 PF10531 SLBB domain RAF_RS00800 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RAF_RS00800 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RAF_RS00805 PF10502 Signal peptidase, peptidase S26 RAF_RS00810 PF00035 Double-stranded RNA binding motif RAF_RS00810 PF14622 Ribonuclease-III-like RAF_RS00815 PF01926 50S ribosome-binding GTPase RAF_RS00815 PF07650 KH domain RAF_RS00820 PF02075 Crossover junction endodeoxyribonuclease RuvC RAF_RS00825 PF00588 SpoU rRNA Methylase family RAF_RS00840 PF06258 Mitochondrial fission ELM1 RAF_RS00845 PF10609 NUBPL iron-transfer P-loop NTPase RAF_RS00850 PF12221 Bacterial membrane protein N terminal RAF_RS00850 PF01145 SPFH domain / Band 7 family RAF_RS00855 PF01145 SPFH domain / Band 7 family RAF_RS00860 PF13180 PDZ domain RAF_RS00865 PF00581 Rhodanese-like domain RAF_RS00865 PF17773 UPF0176 acylphosphatase like domain RAF_RS00870 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RAF_RS00875 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RAF_RS00880 PF00890 FAD binding domain RAF_RS00880 PF02910 Fumarate reductase flavoprotein C-term RAF_RS00885 PF00528 Binding-protein-dependent transport system inner membrane component RAF_RS00890 PF00164 Ribosomal protein S12/S23 RAF_RS00895 PF00177 Ribosomal protein S7p/S5e RAF_RS00900 PF00679 Elongation factor G C-terminus RAF_RS00900 PF14492 Elongation Factor G, domain II RAF_RS00900 PF00009 Elongation factor Tu GTP binding domain RAF_RS00900 PF03144 Elongation factor Tu domain 2 RAF_RS00900 PF03764 Elongation factor G, domain IV RAF_RS00910 PF00584 SecE/Sec61-gamma subunits of protein translocation complex RAF_RS00915 PF02357 Transcription termination factor nusG RAF_RS00915 PF00467 KOW motif RAF_RS00920 PF00298 Ribosomal protein L11, RNA binding domain RAF_RS00920 PF03946 Ribosomal protein L11, N-terminal domain RAF_RS00925 PF00687 Ribosomal protein L1p/L10e family RAF_RS00930 PF00466 Ribosomal protein L10 RAF_RS00935 PF00542 Ribosomal protein L7/L12 C-terminal domain RAF_RS00935 PF16320 Ribosomal protein L7/L12 dimerisation domain RAF_RS00940 PF04565 RNA polymerase Rpb2, domain 3 RAF_RS00940 PF10385 RNA polymerase beta subunit external 1 domain RAF_RS00940 PF00562 RNA polymerase Rpb2, domain 6 RAF_RS00940 PF04560 RNA polymerase Rpb2, domain 7 RAF_RS00940 PF04563 RNA polymerase beta subunit RAF_RS00940 PF04561 RNA polymerase Rpb2, domain 2 RAF_RS00945 PF04983 RNA polymerase Rpb1, domain 3 RAF_RS00945 PF00623 RNA polymerase Rpb1, domain 2 RAF_RS00945 PF04998 RNA polymerase Rpb1, domain 5 RAF_RS00945 PF04997 RNA polymerase Rpb1, domain 1 RAF_RS00945 PF05000 RNA polymerase Rpb1, domain 4 RAF_RS00950 PF00676 Dehydrogenase E1 component RAF_RS00950 PF16870 2-oxoglutarate dehydrogenase C-terminal RAF_RS00950 PF02779 Transketolase, pyrimidine binding domain RAF_RS00950 PF16078 2-oxoglutarate dehydrogenase N-terminus RAF_RS00955 PF02789 Cytosol aminopeptidase family, N-terminal domain RAF_RS00955 PF00883 Cytosol aminopeptidase family, catalytic domain RAF_RS00965 PF11304 Protein of unknown function (DUF3106) RAF_RS00970 PF00152 tRNA synthetases class II (D, K and N) RAF_RS00970 PF02938 GAD domain RAF_RS00970 PF01336 OB-fold nucleic acid binding domain RAF_RS00980 PF01027 Inhibitor of apoptosis-promoting Bax1 RAF_RS00985 PF05173 Dihydrodipicolinate reductase, C-terminus RAF_RS00985 PF01113 Dihydrodipicolinate reductase, N-terminus RAF_RS00990 PF01613 Flavin reductase like domain RAF_RS00995 PF00497 Bacterial extracellular solute-binding proteins, family 3 RAF_RS01000 PF02934 GatB/GatE catalytic domain RAF_RS01000 PF02637 GatB domain RAF_RS01005 PF01425 Amidase RAF_RS01010 PF02686 Glu-tRNAGln amidotransferase C subunit RAF_RS01015 PF01765 Ribosome recycling factor RAF_RS01020 PF00696 Amino acid kinase family RAF_RS01030 PF07690 Major Facilitator Superfamily RAF_RS01035 PF10879 Protein of unknown function (DUF2674) RAF_RS01055 PF07244 Surface antigen variable number repeat RAF_RS01055 PF01103 Surface antigen RAF_RS01060 PF02163 Peptidase family M50 RAF_RS01060 PF17820 PDZ domain RAF_RS01065 PF01029 NusB family RAF_RS01070 PF01728 FtsJ-like methyltransferase RAF_RS01085 PF03364 Polyketide cyclase / dehydrase and lipid transport RAF_RS01090 PF07896 Protein of unknown function (DUF1674) RAF_RS01095 PF04452 RNA methyltransferase RAF_RS01100 PF04070 Domain of unknown function (DUF378) RAF_RS01105 PF00873 AcrB/AcrD/AcrF family RAF_RS01110 PF00216 Bacterial DNA-binding protein RAF_RS01115 PF09115 DNA polymerase III, delta subunit, C terminal RAF_RS01120 PF00448 SRP54-type protein, GTPase domain RAF_RS01120 PF02881 SRP54-type protein, helical bundle domain RAF_RS01120 PF02978 Signal peptide binding domain RAF_RS01125 PF00326 Prolyl oligopeptidase family RAF_RS01125 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain RAF_RS01135 PF00326 Prolyl oligopeptidase family RAF_RS01135 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain RAF_RS01140 PF00326 Prolyl oligopeptidase family RAF_RS01140 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain RAF_RS01145 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain RAF_RS01145 PF00326 Prolyl oligopeptidase family RAF_RS01150 PF06969 HemN C-terminal domain RAF_RS01150 PF04055 Radical SAM superfamily RAF_RS01155 PF12796 Ankyrin repeats (3 copies) RAF_RS01160 PF12796 Ankyrin repeats (3 copies) RAF_RS01180 PF00375 Sodium:dicarboxylate symporter family RAF_RS01190 PF01242 6-pyruvoyl tetrahydropterin synthase RAF_RS01195 PF00364 Biotin-requiring enzyme RAF_RS01195 PF02817 e3 binding domain RAF_RS01195 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RAF_RS01200 PF16078 2-oxoglutarate dehydrogenase N-terminus RAF_RS01200 PF00676 Dehydrogenase E1 component RAF_RS01200 PF16870 2-oxoglutarate dehydrogenase C-terminal RAF_RS01200 PF02779 Transketolase, pyrimidine binding domain RAF_RS01205 PF02074 Carboxypeptidase Taq (M32) metallopeptidase RAF_RS01210 PF02463 RecF/RecN/SMC N terminal domain RAF_RS01215 PF13525 Outer membrane lipoprotein RAF_RS01225 PF00226 DnaJ domain RAF_RS01225 PF00684 DnaJ central domain RAF_RS01225 PF01556 DnaJ C terminal domain RAF_RS01230 PF00012 Hsp70 protein RAF_RS01265 PF00510 Cytochrome c oxidase subunit III RAF_RS01270 PF04956 TrbC/VIRB2 family RAF_RS01275 PF13717 zinc-ribbon domain RAF_RS01280 PF14602 Hexapeptide repeat of succinyl-transferase RAF_RS01280 PF00132 Bacterial transferase hexapeptide (six repeats) RAF_RS01280 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal RAF_RS01295 PF00905 Penicillin binding protein transpeptidase domain RAF_RS01295 PF00912 Transglycosylase RAF_RS01295 PF06832 Penicillin-Binding Protein C-terminus Family RAF_RS01335 PF03797 Autotransporter beta-domain RAF_RS01340 PF00582 Universal stress protein family RAF_RS01355 PF00111 2Fe-2S iron-sulfur cluster binding domain RAF_RS01360 PF00012 Hsp70 protein RAF_RS01365 PF00226 DnaJ domain RAF_RS01365 PF07743 HSCB C-terminal oligomerisation domain RAF_RS01370 PF01351 Ribonuclease HII RAF_RS01375 PF00271 Helicase conserved C-terminal domain RAF_RS01375 PF17757 UvrB interaction domain RAF_RS01375 PF02151 UvrB/uvrC motif RAF_RS01375 PF12344 Ultra-violet resistance protein B RAF_RS01375 PF04851 Type III restriction enzyme, res subunit RAF_RS01380 PF00462 Glutaredoxin RAF_RS01390 PF03989 DNA gyrase C-terminal domain, beta-propeller RAF_RS01390 PF00521 DNA gyrase/topoisomerase IV, subunit A RAF_RS01430 PF01327 Polypeptide deformylase RAF_RS01435 PF00551 Formyl transferase RAF_RS01435 PF02911 Formyl transferase, C-terminal domain RAF_RS01470 PF02547 Queuosine biosynthesis protein RAF_RS01485 PF00664 ABC transporter transmembrane region RAF_RS01485 PF00005 ABC transporter RAF_RS01490 PF10877 Protein of unknown function (DUF2671) RAF_RS01495 PF01654 Cytochrome bd terminal oxidase subunit I RAF_RS01500 PF02322 Cytochrome bd terminal oxidase subunit II RAF_RS01505 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system RAF_RS01515 PF00535 Glycosyl transferase family 2 RAF_RS01520 PF00675 Insulinase (Peptidase family M16) RAF_RS01520 PF05193 Peptidase M16 inactive domain RAF_RS01525 PF01259 SAICAR synthetase RAF_RS01535 PF03129 Anticodon binding domain RAF_RS01535 PF02824 TGS domain RAF_RS01535 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RAF_RS01535 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RAF_RS01550 PF03412 Peptidase C39 family RAF_RS01550 PF00005 ABC transporter RAF_RS01550 PF00664 ABC transporter transmembrane region RAF_RS01555 PF00005 ABC transporter RAF_RS01555 PF00664 ABC transporter transmembrane region RAF_RS01570 PF10859 Protein of unknown function (DUF2660) RAF_RS01585 PF02321 Outer membrane efflux protein RAF_RS01590 PF10691 Protein of unknown function (DUF2497) RAF_RS01605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAF_RS01605 PF01751 Toprim domain RAF_RS01605 PF00986 DNA gyrase B subunit, carboxyl terminus RAF_RS01605 PF00204 DNA gyrase B RAF_RS01610 PF13180 PDZ domain RAF_RS01610 PF03572 Peptidase family S41 RAF_RS01615 PF13188 PAS domain RAF_RS01615 PF00512 His Kinase A (phospho-acceptor) domain RAF_RS01615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAF_RS01615 PF00989 PAS fold RAF_RS01625 PF10858 Protein of unknown function (DUF2659) RAF_RS01630 PF13360 PQQ-like domain RAF_RS01635 PF00572 Ribosomal protein L13 RAF_RS01640 PF00380 Ribosomal protein S9/S16 RAF_RS01670 PF00293 NUDIX domain RAF_RS01675 PF00072 Response regulator receiver domain RAF_RS01675 PF00990 Diguanylate cyclase, GGDEF domain RAF_RS01680 PF08207 Elongation factor P (EF-P) KOW-like domain RAF_RS01680 PF09285 Elongation factor P, C-terminal RAF_RS01680 PF01132 Elongation factor P (EF-P) OB domain RAF_RS01685 PF00459 Inositol monophosphatase family RAF_RS01690 PF11020 Domain of unknown function (DUF2610) RAF_RS01695 PF02666 Phosphatidylserine decarboxylase RAF_RS01700 PF01066 CDP-alcohol phosphatidyltransferase RAF_RS01705 PF13533 Biotin-lipoyl like RAF_RS01720 PF00563 EAL domain RAF_RS01725 PF08245 Mur ligase middle domain RAF_RS01725 PF02875 Mur ligase family, glutamate ligase domain RAF_RS01725 PF01225 Mur ligase family, catalytic domain RAF_RS01730 PF01565 FAD binding domain RAF_RS01730 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RAF_RS01735 PF01820 D-ala D-ala ligase N-terminus RAF_RS01735 PF07478 D-ala D-ala ligase C-terminus RAF_RS01740 PF03799 Cell division protein FtsQ RAF_RS01740 PF08478 POTRA domain, FtsQ-type RAF_RS01745 PF02491 SHS2 domain inserted in FTSA RAF_RS01750 PF01957 NfeD-like C-terminal, partner-binding RAF_RS01755 PF00034 Cytochrome c RAF_RS01765 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase RAF_RS01775 PF00575 S1 RNA binding domain RAF_RS01775 PF10150 Ribonuclease E/G family RAF_RS01780 PF02628 Cytochrome oxidase assembly protein RAF_RS01785 PF01479 S4 domain RAF_RS01785 PF00849 RNA pseudouridylate synthase RAF_RS01790 PF11954 Domain of unknown function (DUF3471) RAF_RS01790 PF00144 Beta-lactamase RAF_RS01795 PF03372 Endonuclease/Exonuclease/phosphatase family RAF_RS01800 PF00676 Dehydrogenase E1 component RAF_RS01805 PF02779 Transketolase, pyrimidine binding domain RAF_RS01805 PF02780 Transketolase, C-terminal domain RAF_RS01810 PF00009 Elongation factor Tu GTP binding domain RAF_RS01810 PF00679 Elongation factor G C-terminus RAF_RS01810 PF03144 Elongation factor Tu domain 2 RAF_RS01830 PF18324 Hypothetical protein TT1725 RAF_RS01830 PF00180 Isocitrate/isopropylmalate dehydrogenase RAF_RS01835 PF03334 Na+/H+ antiporter subunit RAF_RS01840 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RAF_RS01840 PF00361 Proton-conducting membrane transporter RAF_RS01840 PF13244 Domain of unknown function (DUF4040) RAF_RS01845 PF03379 CcmB protein RAF_RS01850 PF10875 Protein of unknown function (DUF2670) RAF_RS01855 PF00355 Rieske [2Fe-2S] domain RAF_RS01855 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal RAF_RS01860 PF00032 Cytochrome b(C-terminal)/b6/petD RAF_RS01860 PF00033 Cytochrome b/b6/petB RAF_RS01865 PF02167 Cytochrome C1 family RAF_RS01880 PF00011 Hsp20/alpha crystallin family RAF_RS01900 PF00472 RF-1 domain RAF_RS01900 PF03462 PCRF domain RAF_RS01905 PF03144 Elongation factor Tu domain 2 RAF_RS01905 PF06421 GTP-binding protein LepA C-terminus RAF_RS01905 PF00679 Elongation factor G C-terminus RAF_RS01905 PF00009 Elongation factor Tu GTP binding domain RAF_RS01945 PF02824 TGS domain RAF_RS01945 PF13291 ACT domain RAF_RS01945 PF04607 Region found in RelA / SpoT proteins RAF_RS01955 PF01098 Cell cycle protein RAF_RS01960 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain RAF_RS01960 PF00326 Prolyl oligopeptidase family RAF_RS01965 PF00361 Proton-conducting membrane transporter RAF_RS01970 PF01850 PIN domain RAF_RS01985 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RAF_RS01985 PF00361 Proton-conducting membrane transporter RAF_RS01985 PF13244 Domain of unknown function (DUF4040) RAF_RS01990 PF00361 Proton-conducting membrane transporter RAF_RS01995 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RAF_RS02010 PF10913 Protein of unknown function (DUF2706) RAF_RS02015 PF04335 VirB8 protein RAF_RS02020 PF03524 Conjugal transfer protein RAF_RS02025 PF03743 Bacterial conjugation TrbI-like protein RAF_RS02030 PF00437 Type II/IV secretion system protein RAF_RS02035 PF02534 Type IV secretory system Conjugative DNA transfer RAF_RS02075 PF11019 Protein of unknown function (DUF2608) RAF_RS02080 PF11019 Protein of unknown function (DUF2608) RAF_RS02085 PF00459 Inositol monophosphatase family RAF_RS02090 PF05192 MutS domain III RAF_RS02090 PF00488 MutS domain V RAF_RS02090 PF05190 MutS family domain IV RAF_RS02090 PF05188 MutS domain II RAF_RS02090 PF01624 MutS domain I RAF_RS02095 PF02502 Ribose/Galactose Isomerase RAF_RS02105 PF01863 Protein of unknown function DUF45 RAF_RS02110 PF02511 Thymidylate synthase complementing protein RAF_RS02115 PF07676 WD40-like Beta Propeller Repeat RAF_RS02115 PF04052 TolB amino-terminal domain RAF_RS02120 PF04545 Sigma-70, region 4 RAF_RS02120 PF04542 Sigma-70 region 2 RAF_RS02120 PF00140 Sigma-70 factor, region 1.2 RAF_RS02125 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 RAF_RS02140 PF13520 Amino acid permease RAF_RS02145 PF13393 Histidyl-tRNA synthetase RAF_RS02145 PF03129 Anticodon binding domain RAF_RS02150 PF12848 ABC transporter RAF_RS02150 PF00005 ABC transporter RAF_RS02175 PF01618 MotA/TolQ/ExbB proton channel family RAF_RS02180 PF02472 Biopolymer transport protein ExbD/TolR RAF_RS02190 PF02824 TGS domain RAF_RS02190 PF04607 Region found in RelA / SpoT proteins RAF_RS02190 PF13291 ACT domain RAF_RS02195 PF07690 Major Facilitator Superfamily RAF_RS02200 PF00529 HlyD membrane-fusion protein of T1SS RAF_RS02205 PF00005 ABC transporter RAF_RS02205 PF00664 ABC transporter transmembrane region RAF_RS02210 PF01118 Semialdehyde dehydrogenase, NAD binding domain RAF_RS02210 PF02774 Semialdehyde dehydrogenase, dimerisation domain RAF_RS02215 PF01230 HIT domain RAF_RS02220 PF10947 Protein of unknown function (DUF2628) RAF_RS02225 PF00227 Proteasome subunit RAF_RS02230 PF00493 MCM P-loop domain RAF_RS02230 PF07724 AAA domain (Cdc48 subfamily) RAF_RS02230 PF10431 C-terminal, D2-small domain, of ClpB protein RAF_RS02245 PF01078 Magnesium chelatase, subunit ChlI RAF_RS02245 PF13335 Magnesium chelatase, subunit ChlI C-terminal RAF_RS02260 PF02684 Lipid-A-disaccharide synthetase RAF_RS02270 PF02618 YceG-like family RAF_RS02275 PF01491 Frataxin-like domain RAF_RS02295 PF00749 tRNA synthetases class I (E and Q), catalytic domain RAF_RS02300 PF13368 Topoisomerase C-terminal repeat RAF_RS02300 PF01751 Toprim domain RAF_RS02300 PF01131 DNA topoisomerase RAF_RS02300 PF01396 Topoisomerase DNA binding C4 zinc finger RAF_RS02305 PF17782 DprA winged helix domain RAF_RS02305 PF02481 DNA recombination-mediator protein A RAF_RS02310 PF17782 DprA winged helix domain RAF_RS02310 PF02481 DNA recombination-mediator protein A RAF_RS02315 PF10417 C-terminal domain of 1-Cys peroxiredoxin RAF_RS02315 PF00578 AhpC/TSA family RAF_RS02320 PF01145 SPFH domain / Band 7 family RAF_RS02330 PF00884 Sulfatase RAF_RS02330 PF08019 Phosphoethanolamine transferase EptA/EptB RAF_RS02335 PF03652 Holliday junction resolvase RAF_RS02355 PF02719 Polysaccharide biosynthesis protein RAF_RS02355 PF08485 Polysaccharide biosynthesis protein C-terminal RAF_RS02360 PF02350 UDP-N-acetylglucosamine 2-epimerase RAF_RS02375 PF00535 Glycosyl transferase family 2 RAF_RS02380 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RAF_RS02395 PF00534 Glycosyl transferases group 1 RAF_RS02395 PF00862 Sucrose synthase RAF_RS02405 PF01479 S4 domain RAF_RS02405 PF00163 Ribosomal protein S4/S9 N-terminal domain RAF_RS02410 PF01040 UbiA prenyltransferase family RAF_RS02435 PF05239 PRC-barrel domain RAF_RS02435 PF01782 RimM N-terminal domain RAF_RS02445 PF02609 Exonuclease VII small subunit RAF_RS02465 PF02245 Methylpurine-DNA glycosylase (MPG) RAF_RS02475 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RAF_RS02480 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RAF_RS02485 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RAF_RS02490 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 RAF_RS02495 PF04932 O-Antigen ligase RAF_RS02500 PF09923 Uncharacterized protein conserved in bacteria (DUF2155) RAF_RS02520 PF02899 Phage integrase, N-terminal SAM-like domain RAF_RS02520 PF00589 Phage integrase family RAF_RS02525 PF17422 Family of unknown function (DUF5410) RAF_RS02530 PF17422 Family of unknown function (DUF5410) RAF_RS02540 PF00795 Carbon-nitrogen hydrolase RAF_RS02550 PF01510 N-acetylmuramoyl-L-alanine amidase RAF_RS02550 PF01471 Putative peptidoglycan binding domain RAF_RS02555 PF04392 ABC transporter substrate binding protein RAF_RS02560 PF02653 Branched-chain amino acid transport system / permease component RAF_RS02565 PF00005 ABC transporter RAF_RS02590 PF01921 tRNA synthetases class I (K) RAF_RS02600 PF00390 Malic enzyme, N-terminal domain RAF_RS02600 PF03949 Malic enzyme, NAD binding domain RAF_RS02600 PF01515 Phosphate acetyl/butaryl transferase RAF_RS02620 PF07690 Major Facilitator Superfamily RAF_RS02660 PF00056 lactate/malate dehydrogenase, NAD binding domain RAF_RS02660 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RAF_RS02675 PF03219 TLC ATP/ADP transporter RAF_RS02680 PF00117 Glutamine amidotransferase class-I RAF_RS02680 PF06418 CTP synthase N-terminus RAF_RS02685 PF02348 Cytidylyltransferase RAF_RS02705 PF00115 Cytochrome C and Quinol oxidase polypeptide I RAF_RS02710 PF01227 GTP cyclohydrolase I RAF_RS02715 PF03129 Anticodon binding domain RAF_RS02715 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RAF_RS02720 PF12728 Helix-turn-helix domain RAF_RS02720 PF02661 Fic/DOC family RAF_RS02730 PF01330 RuvA N terminal domain RAF_RS02730 PF07499 RuvA, C-terminal domain RAF_RS02745 PF05496 Holliday junction DNA helicase RuvB P-loop domain RAF_RS02745 PF05491 RuvB C-terminal winged helix domain RAF_RS02745 PF17864 RuvB AAA lid domain RAF_RS02750 PF00664 ABC transporter transmembrane region RAF_RS02750 PF00005 ABC transporter RAF_RS02755 PF07690 Major Facilitator Superfamily RAF_RS02760 PF00768 D-alanyl-D-alanine carboxypeptidase RAF_RS02760 PF07943 Penicillin-binding protein 5, C-terminal domain RAF_RS02765 PF03330 Lytic transglycolase RAF_RS02770 PF04972 BON domain RAF_RS02775 PF04279 Intracellular septation protein A RAF_RS02785 PF13473 Cupredoxin-like domain RAF_RS02790 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RAF_RS02795 PF00775 Dioxygenase RAF_RS02800 PF00578 AhpC/TSA family RAF_RS02805 PF06965 Na+/H+ antiporter 1 RAF_RS02805 PF01343 Peptidase family S49 RAF_RS02810 PF00692 dUTPase RAF_RS02815 PF01464 Transglycosylase SLT domain RAF_RS02815 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain RAF_RS02825 PF17676 LD-carboxypeptidase C-terminal domain RAF_RS02825 PF02016 LD-carboxypeptidase N-terminal domain RAF_RS02830 PF12705 PD-(D/E)XK nuclease superfamily RAF_RS02840 PF07722 Peptidase C26 RAF_RS02845 PF00115 Cytochrome C and Quinol oxidase polypeptide I RAF_RS02855 PF02790 Cytochrome C oxidase subunit II, transmembrane domain RAF_RS02855 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RAF_RS02865 PF01551 Peptidase family M23 RAF_RS02865 PF04225 Opacity-associated protein A LysM-like domain RAF_RS02870 PF01252 Signal peptidase (SPase) II RAF_RS02880 PF08245 Mur ligase middle domain RAF_RS02885 PF01098 Cell cycle protein RAF_RS02890 PF03033 Glycosyltransferase family 28 N-terminal domain RAF_RS02890 PF04101 Glycosyltransferase family 28 C-terminal domain RAF_RS02895 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) RAF_RS02920 PF00873 AcrB/AcrD/AcrF family RAF_RS02925 PF00873 AcrB/AcrD/AcrF family RAF_RS02935 PF00873 AcrB/AcrD/AcrF family RAF_RS02955 PF02321 Outer membrane efflux protein RAF_RS02965 PF00534 Glycosyl transferases group 1 RAF_RS02985 PF01678 Diaminopimelate epimerase RAF_RS02990 PF04055 Radical SAM superfamily RAF_RS02990 PF00919 Uncharacterized protein family UPF0004 RAF_RS02995 PF01409 tRNA synthetases class II core domain (F) RAF_RS02995 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RAF_RS03000 PF03484 tRNA synthetase B5 domain RAF_RS03000 PF03483 B3/4 domain RAF_RS03000 PF03147 Ferredoxin-fold anticodon binding domain RAF_RS03000 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RAF_RS03000 PF01588 Putative tRNA binding domain RAF_RS03005 PF00712 DNA polymerase III beta subunit, N-terminal domain RAF_RS03005 PF02767 DNA polymerase III beta subunit, central domain RAF_RS03005 PF02768 DNA polymerase III beta subunit, C-terminal domain RAF_RS03015 PF12100 Domain of unknown function (DUF3576) RAF_RS03020 PF00133 tRNA synthetases class I (I, L, M and V) RAF_RS03020 PF13603 Leucyl-tRNA synthetase, Domain 2 RAF_RS03020 PF08264 Anticodon-binding domain of tRNA RAF_RS03025 PF00570 HRDC domain RAF_RS03025 PF01612 3'-5' exonuclease RAF_RS03030 PF04977 Septum formation initiator RAF_RS03040 PF01255 Putative undecaprenyl diphosphate synthase RAF_RS03045 PF00512 His Kinase A (phospho-acceptor) domain RAF_RS03045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAF_RS03045 PF00672 HAMP domain RAF_RS03050 PF00072 Response regulator receiver domain RAF_RS03050 PF00486 Transcriptional regulatory protein, C terminal RAF_RS03055 PF01063 Amino-transferase class IV RAF_RS03060 PF00701 Dihydrodipicolinate synthetase family RAF_RS03065 PF01668 SmpB protein RAF_RS03075 PF02629 CoA binding domain RAF_RS03075 PF00549 CoA-ligase RAF_RS03080 PF00549 CoA-ligase RAF_RS03080 PF08442 ATP-grasp domain RAF_RS03105 PF00326 Prolyl oligopeptidase family RAF_RS03110 PF04280 Tim44-like domain RAF_RS03125 PF02033 Ribosome-binding factor A RAF_RS03135 PF06271 RDD family RAF_RS03140 PF13662 Toprim domain RAF_RS03140 PF02132 RecR protein RAF_RS03145 PF01513 ATP-NAD kinase RAF_RS03150 PF12706 Beta-lactamase superfamily domain RAF_RS03150 PF17770 Ribonuclease J C-terminal domain RAF_RS03150 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain RAF_RS03155 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RAF_RS03155 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RAF_RS03165 PF12697 Alpha/beta hydrolase family RAF_RS03170 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAF_RS03190 PF00171 Aldehyde dehydrogenase family RAF_RS03200 PF00535 Glycosyl transferase family 2 RAF_RS03205 PF00580 UvrD/REP helicase N-terminal domain RAF_RS03205 PF13361 UvrD-like helicase C-terminal domain RAF_RS03220 PF00585 C-terminal regulatory domain of Threonine dehydratase RAF_RS03220 PF00291 Pyridoxal-phosphate dependent enzyme RAF_RS03225 PF02190 ATP-dependent protease La (LON) substrate-binding domain RAF_RS03225 PF00004 ATPase family associated with various cellular activities (AAA) RAF_RS03225 PF05362 Lon protease (S16) C-terminal proteolytic domain RAF_RS03255 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus RAF_RS03255 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RAF_RS03260 PF00101 Ribulose bisphosphate carboxylase, small chain RAF_RS03260 PF00132 Bacterial transferase hexapeptide (six repeats) RAF_RS03265 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RAF_RS03265 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RAF_RS03270 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAF_RS03315 PF00317 Ribonucleotide reductase, all-alpha domain RAF_RS03315 PF03477 ATP cone domain RAF_RS03315 PF02867 Ribonucleotide reductase, barrel domain RAF_RS03330 PF00268 Ribonucleotide reductase, small chain RAF_RS03335 PF00805 Pentapeptide repeats (8 copies) RAF_RS03340 PF00805 Pentapeptide repeats (8 copies) RAF_RS03345 PF00805 Pentapeptide repeats (8 copies) RAF_RS03355 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RAF_RS03355 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RAF_RS03355 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RAF_RS03355 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RAF_RS03360 PF00005 ABC transporter RAF_RS03365 PF03968 OstA-like protein RAF_RS03370 PF06835 Lipopolysaccharide-assembly, LptC-related RAF_RS03375 PF00571 CBS domain RAF_RS03375 PF01380 SIS domain RAF_RS03380 PF03725 3' exoribonuclease family, domain 2 RAF_RS03380 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RAF_RS03380 PF00013 KH domain RAF_RS03380 PF00575 S1 RNA binding domain RAF_RS03380 PF01138 3' exoribonuclease family, domain 1 RAF_RS03385 PF00312 Ribosomal protein S15 RAF_RS03390 PF01509 TruB family pseudouridylate synthase (N terminal domain) RAF_RS03390 PF16198 tRNA pseudouridylate synthase B C-terminal domain RAF_RS03395 PF03219 TLC ATP/ADP transporter RAF_RS03400 PF12574 120 KDa Rickettsia surface antigen RAF_RS03405 PF01381 Helix-turn-helix RAF_RS03410 PF03631 Virulence factor BrkB RAF_RS03420 PF02578 Multi-copper polyphenol oxidoreductase laccase RAF_RS03425 PF01327 Polypeptide deformylase RAF_RS03440 PF00596 Class II Aldolase and Adducin N-terminal domain RAF_RS03450 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RAF_RS03450 PF02896 PEP-utilising enzyme, TIM barrel domain RAF_RS03450 PF00391 PEP-utilising enzyme, mobile domain RAF_RS03460 PF09825 Biotin-protein ligase, N terminal RAF_RS03465 PF02632 BioY family RAF_RS03470 PF02875 Mur ligase family, glutamate ligase domain RAF_RS03470 PF08245 Mur ligase middle domain RAF_RS03480 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RAF_RS03480 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RAF_RS03495 PF03099 Biotin/lipoate A/B protein ligase family RAF_RS03495 PF02237 Biotin protein ligase C terminal domain RAF_RS03515 PF10097 Predicted membrane protein (DUF2335) RAF_RS03520 PF05198 Translation initiation factor IF-3, N-terminal domain RAF_RS03520 PF00707 Translation initiation factor IF-3, C-terminal domain RAF_RS03525 PF02817 e3 binding domain RAF_RS03525 PF00364 Biotin-requiring enzyme RAF_RS03525 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RAF_RS03530 PF03462 PCRF domain RAF_RS03530 PF00472 RF-1 domain RAF_RS03540 PF01368 DHH family RAF_RS03540 PF17768 RecJ OB domain RAF_RS03540 PF02272 DHHA1 domain RAF_RS03545 PF13847 Methyltransferase domain RAF_RS03550 PF07497 Rho termination factor, RNA-binding domain RAF_RS03550 PF07498 Rho termination factor, N-terminal domain RAF_RS03550 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RAF_RS03555 PF01343 Peptidase family S49 RAF_RS03560 PF00216 Bacterial DNA-binding protein RAF_RS03575 PF03883 Peroxide stress protein YaaA RAF_RS03595 PF12615 F sex factor protein N terminal RAF_RS03595 PF10412 Type IV secretion-system coupling protein DNA-binding domain RAF_RS03605 PF04607 Region found in RelA / SpoT proteins RAF_RS03605 PF12796 Ankyrin repeats (3 copies) RAF_RS03605 PF00023 Ankyrin repeat RAF_RS03610 PF12796 Ankyrin repeats (3 copies) RAF_RS03610 PF04607 Region found in RelA / SpoT proteins RAF_RS03610 PF00023 Ankyrin repeat RAF_RS03625 PF02086 D12 class N6 adenine-specific DNA methyltransferase RAF_RS03640 PF02224 Cytidylate kinase RAF_RS03645 PF00575 S1 RNA binding domain RAF_RS03650 PF00574 Clp protease RAF_RS03665 PF01070 FMN-dependent dehydrogenase RAF_RS03685 PF17761 DUF1016 N-terminal domain RAF_RS03685 PF06250 YhcG PDDEXK nuclease domain RAF_RS03705 PF06691 Protein of unknown function (DUF1189) RAF_RS03725 PF02082 Transcriptional regulator RAF_RS03730 PF00266 Aminotransferase class-V RAF_RS03735 PF00266 Aminotransferase class-V RAF_RS03740 PF01592 NifU-like N terminal domain RAF_RS03745 PF01521 Iron-sulphur cluster biosynthesis RAF_RS03760 PF13520 Amino acid permease RAF_RS03765 PF00557 Metallopeptidase family M24 RAF_RS03765 PF01321 Creatinase/Prolidase N-terminal domain RAF_RS03780 PF00348 Polyprenyl synthetase RAF_RS03790 PF03219 TLC ATP/ADP transporter RAF_RS03810 PF07690 Major Facilitator Superfamily RAF_RS03820 PF01810 LysE type translocator RAF_RS03835 PF07219 HemY protein N-terminus RAF_RS03840 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RAF_RS03855 PF10116 Protein required for attachment to host cells RAF_RS03865 PF00579 tRNA synthetases class I (W and Y) RAF_RS03885 PF03900 Porphobilinogen deaminase, C-terminal domain RAF_RS03885 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RAF_RS03890 PF02016 LD-carboxypeptidase N-terminal domain RAF_RS03890 PF17676 LD-carboxypeptidase C-terminal domain RAF_RS03915 PF01571 Aminomethyltransferase folate-binding domain RAF_RS03925 PF01612 3'-5' exonuclease RAF_RS03925 PF00570 HRDC domain RAF_RS03935 PF01812 5-formyltetrahydrofolate cyclo-ligase family RAF_RS03940 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAF_RS03940 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RAF_RS03945 PF08241 Methyltransferase domain RAF_RS03955 PF02086 D12 class N6 adenine-specific DNA methyltransferase RAF_RS03970 PF10811 Protein of unknown function (DUF2532) RAF_RS03990 PF00444 Ribosomal protein L36 RAF_RS03995 PF01709 Transcriptional regulator RAF_RS04000 PF12804 MobA-like NTP transferase domain RAF_RS04000 PF00132 Bacterial transferase hexapeptide (six repeats) RAF_RS04060 PF00361 Proton-conducting membrane transporter RAF_RS04065 PF18640 LepB N-terminal domain RAF_RS04070 PF00490 Delta-aminolevulinic acid dehydratase RAF_RS04075 PF13606 Ankyrin repeat RAF_RS04075 PF12796 Ankyrin repeats (3 copies) RAF_RS04090 PF18319 PriA DNA helicase Cys-rich region (CRR) domain RAF_RS04090 PF00270 DEAD/DEAH box helicase RAF_RS04090 PF18074 Primosomal protein N C-terminal domain RAF_RS04090 PF17764 3′ DNA-binding domain (3′BD) RAF_RS04090 PF00271 Helicase conserved C-terminal domain RAF_RS04095 PF02441 Flavoprotein RAF_RS04100 PF03796 DnaB-like helicase C terminal domain RAF_RS04100 PF00772 DnaB-like helicase N terminal domain RAF_RS04115 PF03222 Tryptophan/tyrosine permease family RAF_RS04120 PF00849 RNA pseudouridylate synthase RAF_RS04120 PF01479 S4 domain RAF_RS04135 PF18073 Rubredoxin metal binding domain RAF_RS04145 PF11967 Recombination protein O N terminal RAF_RS04145 PF02565 Recombination protein O C terminal RAF_RS04155 PF00814 Glycoprotease family RAF_RS04165 PF04760 Translation initiation factor IF-2, N-terminal region RAF_RS04165 PF11987 Translation-initiation factor 2 RAF_RS04165 PF00009 Elongation factor Tu GTP binding domain RAF_RS04170 PF13184 NusA-like KH domain RAF_RS04170 PF00575 S1 RNA binding domain RAF_RS04170 PF08529 NusA N-terminal domain RAF_RS04175 PF17384 RimP C-terminal SH3 domain RAF_RS04175 PF02576 RimP N-terminal domain RAF_RS04190 PF02082 Transcriptional regulator RAF_RS04195 PF01479 S4 domain RAF_RS04195 PF01728 FtsJ-like methyltransferase RAF_RS04200 PF00579 tRNA synthetases class I (W and Y) RAF_RS04265 PF00207 Alpha-2-macroglobulin family RAF_RS04265 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain RAF_RS04265 PF11974 Bacterial alpha-2-macroglobulin MG3 domain RAF_RS04265 PF17962 Bacterial macroglobulin domain 6 RAF_RS04265 PF01835 MG2 domain RAF_RS04265 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain RAF_RS04280 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAF_RS04285 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAF_RS04315 PF01494 FAD binding domain RAF_RS04325 PF02954 Bacterial regulatory protein, Fis family RAF_RS04325 PF00072 Response regulator receiver domain RAF_RS04325 PF00158 Sigma-54 interaction domain RAF_RS04340 PF00905 Penicillin binding protein transpeptidase domain RAF_RS04340 PF03717 Penicillin-binding Protein dimerisation domain RAF_RS04355 PF03717 Penicillin-binding Protein dimerisation domain RAF_RS04355 PF00905 Penicillin binding protein transpeptidase domain RAF_RS04365 PF01795 MraW methylase family RAF_RS04370 PF02381 MraZ protein, putative antitoxin-like RAF_RS04385 PF00474 Sodium:solute symporter family RAF_RS04390 PF01541 GIY-YIG catalytic domain RAF_RS04390 PF02151 UvrB/uvrC motif RAF_RS04390 PF08459 UvrC Helix-hairpin-helix N-terminal RAF_RS04395 PF04314 Copper chaperone PCu(A)C RAF_RS04415 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RAF_RS04415 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RAF_RS04465 PF00023 Ankyrin repeat RAF_RS04470 PF07516 SecA Wing and Scaffold domain RAF_RS04470 PF01043 SecA preprotein cross-linking domain RAF_RS04470 PF07517 SecA DEAD-like domain RAF_RS04470 PF02810 SEC-C motif RAF_RS04480 PF01648 4'-phosphopantetheinyl transferase superfamily RAF_RS04485 PF01192 RNA polymerase Rpb6 RAF_RS04490 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RAF_RS04495 PF00204 DNA gyrase B RAF_RS04495 PF00986 DNA gyrase B subunit, carboxyl terminus RAF_RS04495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAF_RS04495 PF01751 Toprim domain RAF_RS04500 PF00293 NUDIX domain RAF_RS04500 PF13344 Haloacid dehalogenase-like hydrolase RAF_RS04510 PF03448 MgtE intracellular N domain RAF_RS04510 PF00571 CBS domain RAF_RS04510 PF01769 Divalent cation transporter RAF_RS04555 PF02699 Preprotein translocase subunit RAF_RS04560 PF02355 Protein export membrane protein RAF_RS04565 PF02630 SCO1/SenC RAF_RS04570 PF03100 CcmE RAF_RS04575 PF00719 Inorganic pyrophosphatase RAF_RS04580 PF03023 Lipid II flippase MurJ RAF_RS04585 PF05857 TraX protein RAF_RS04595 PF17191 RecG wedge domain RAF_RS04595 PF00270 DEAD/DEAH box helicase RAF_RS04595 PF00271 Helicase conserved C-terminal domain RAF_RS04610 PF01144 Coenzyme A transferase RAF_RS04615 PF01144 Coenzyme A transferase RAF_RS04635 PF00953 Glycosyl transferase family 4 RAF_RS04640 PF02875 Mur ligase family, glutamate ligase domain RAF_RS04640 PF01225 Mur ligase family, catalytic domain RAF_RS04640 PF08245 Mur ligase middle domain RAF_RS04645 PF01225 Mur ligase family, catalytic domain RAF_RS04645 PF02875 Mur ligase family, glutamate ligase domain RAF_RS04645 PF08245 Mur ligase middle domain RAF_RS04650 PF03461 TRCF domain RAF_RS04650 PF17757 UvrB interaction domain RAF_RS04650 PF00271 Helicase conserved C-terminal domain RAF_RS04650 PF00270 DEAD/DEAH box helicase RAF_RS04650 PF02559 CarD-like/TRCF domain RAF_RS04660 PF00581 Rhodanese-like domain RAF_RS04665 PF00308 Bacterial dnaA protein RAF_RS04665 PF08299 Bacterial dnaA protein helix-turn-helix RAF_RS04665 PF11638 DnaA N-terminal domain RAF_RS04720 PF01926 50S ribosome-binding GTPase RAF_RS04720 PF06071 Protein of unknown function (DUF933) RAF_RS04735 PF01195 Peptidyl-tRNA hydrolase RAF_RS04740 PF01386 Ribosomal L25p family RAF_RS04740 PF14693 Ribosomal protein TL5, C-terminal domain RAF_RS04745 PF04055 Radical SAM superfamily RAF_RS04750 PF01632 Ribosomal protein L35 RAF_RS04755 PF00453 Ribosomal protein L20 RAF_RS04760 PF00468 Ribosomal protein L34 RAF_RS04765 PF00825 Ribonuclease P RAF_RS04780 PF12796 Ankyrin repeats (3 copies) RAF_RS04790 PF01544 CorA-like Mg2+ transporter protein RAF_RS04815 PF00512 His Kinase A (phospho-acceptor) domain RAF_RS04815 PF00672 HAMP domain RAF_RS04815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAF_RS04820 PF01165 Ribosomal protein S21 RAF_RS04840 PF00133 tRNA synthetases class I (I, L, M and V) RAF_RS04840 PF08264 Anticodon-binding domain of tRNA RAF_RS04855 PF13606 Ankyrin repeat RAF_RS04865 PF00364 Biotin-requiring enzyme RAF_RS04865 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RAF_RS04865 PF18140 Propionyl-coenzyme A carboxylase BT domain RAF_RS04865 PF02785 Biotin carboxylase C-terminal domain RAF_RS04865 PF00289 Biotin carboxylase, N-terminal domain RAF_RS04870 PF01039 Carboxyl transferase domain RAF_RS04880 PF01553 Acyltransferase RAF_RS04880 PF00501 AMP-binding enzyme RAF_RS04890 PF00950 ABC 3 transport family RAF_RS04900 PF00749 tRNA synthetases class I (E and Q), catalytic domain RAF_RS04910 PF00118 TCP-1/cpn60 chaperonin family RAF_RS04915 PF00166 Chaperonin 10 Kd subunit RAF_RS04945 PF03725 3' exoribonuclease family, domain 2 RAF_RS04945 PF01138 3' exoribonuclease family, domain 1 RAF_RS04950 PF01025 GrpE RAF_RS04955 PF01594 AI-2E family transporter RAF_RS05005 PF01649 Ribosomal protein S20 RAF_RS05010 PF01196 Ribosomal protein L17 RAF_RS05015 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RAF_RS05015 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RAF_RS05015 PF01000 RNA polymerase Rpb3/RpoA insert domain RAF_RS05020 PF00411 Ribosomal protein S11 RAF_RS05025 PF00416 Ribosomal protein S13/S18 RAF_RS05030 PF05191 Adenylate kinase, active site lid RAF_RS05035 PF00344 SecY translocase RAF_RS05040 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RAF_RS05045 PF00327 Ribosomal protein L30p/L7e RAF_RS05050 PF03719 Ribosomal protein S5, C-terminal domain RAF_RS05050 PF00333 Ribosomal protein S5, N-terminal domain RAF_RS05055 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RAF_RS05060 PF00347 Ribosomal protein L6 RAF_RS05065 PF00410 Ribosomal protein S8 RAF_RS05070 PF00253 Ribosomal protein S14p/S29e RAF_RS05075 PF00673 ribosomal L5P family C-terminus RAF_RS05075 PF00281 Ribosomal protein L5 RAF_RS05080 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RAF_RS05080 PF00467 KOW motif RAF_RS05085 PF00238 Ribosomal protein L14p/L23e RAF_RS05090 PF00366 Ribosomal protein S17 RAF_RS05095 PF00831 Ribosomal L29 protein RAF_RS05100 PF00252 Ribosomal protein L16p/L10e RAF_RS05105 PF07650 KH domain RAF_RS05105 PF00189 Ribosomal protein S3, C-terminal domain RAF_RS05110 PF00237 Ribosomal protein L22p/L17e RAF_RS05115 PF00203 Ribosomal protein S19 RAF_RS05120 PF03947 Ribosomal Proteins L2, C-terminal domain RAF_RS05120 PF00181 Ribosomal Proteins L2, RNA binding domain RAF_RS05125 PF00276 Ribosomal protein L23 RAF_RS05130 PF00573 Ribosomal protein L4/L1 family RAF_RS05135 PF00297 Ribosomal protein L3 RAF_RS05140 PF00338 Ribosomal protein S10p/S20e RAF_RS05145 PF00009 Elongation factor Tu GTP binding domain RAF_RS05145 PF03143 Elongation factor Tu C-terminal domain RAF_RS05145 PF03144 Elongation factor Tu domain 2 RAF_RS05160 PF08032 RNA 2'-O ribose methyltransferase substrate binding RAF_RS05160 PF00588 SpoU rRNA Methylase family RAF_RS05170 PF10415 Fumarase C C-terminus RAF_RS05170 PF00206 Lyase RAF_RS05185 PF00091 Tubulin/FtsZ family, GTPase domain RAF_RS05185 PF12327 FtsZ family, C-terminal domain RAF_RS05195 PF03974 Ecotin RAF_RS05200 PF01106 NifU-like domain RAF_RS05205 PF07690 Major Facilitator Superfamily RAF_RS05210 PF00270 DEAD/DEAH box helicase RAF_RS05210 PF00271 Helicase conserved C-terminal domain RAF_RS05215 PF00313 'Cold-shock' DNA-binding domain RAF_RS05225 PF00398 Ribosomal RNA adenine dimethylase RAF_RS05245 PF13742 OB-fold nucleic acid binding domain RAF_RS05245 PF02601 Exonuclease VII, large subunit RAF_RS05260 PF03372 Endonuclease/Exonuclease/phosphatase family RAF_RS05270 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RAF_RS05270 PF01926 50S ribosome-binding GTPase RAF_RS05275 PF13173 AAA domain RAF_RS05275 PF13635 Domain of unknown function (DUF4143) RAF_RS05300 PF03109 ABC1 family RAF_RS05305 PF01209 ubiE/COQ5 methyltransferase family RAF_RS05310 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RAF_RS05310 PF06827 Zinc finger found in FPG and IleRS RAF_RS05310 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RAF_RS05340 PF01026 TatD related DNase RAF_RS05345 PF09334 tRNA synthetases class I (M) RAF_RS05345 PF08264 Anticodon-binding domain of tRNA RAF_RS05350 PF02223 Thymidylate kinase RAF_RS05355 PF07690 Major Facilitator Superfamily RAF_RS05360 PF01040 UbiA prenyltransferase family RAF_RS05370 PF08264 Anticodon-binding domain of tRNA RAF_RS05370 PF00133 tRNA synthetases class I (I, L, M and V) RAF_RS05380 PF04991 LicD family RAF_RS05395 PF02646 RmuC family RAF_RS05450 PF10431 C-terminal, D2-small domain, of ClpB protein RAF_RS05450 PF07724 AAA domain (Cdc48 subfamily) RAF_RS05450 PF06689 ClpX C4-type zinc finger RAF_RS05460 PF06508 Queuosine biosynthesis protein QueC RAF_RS05475 PF00005 ABC transporter RAF_RS05475 PF00664 ABC transporter transmembrane region RAF_RS05480 PF10880 Protein of unknown function (DUF2673) RAF_RS05485 PF07690 Major Facilitator Superfamily RAF_RS05490 PF02687 FtsX-like permease family RAF_RS05490 PF12704 MacB-like periplasmic core domain RAF_RS05495 PF00005 ABC transporter RAF_RS05505 PF00571 CBS domain RAF_RS05505 PF01595 Cyclin M transmembrane N-terminal domain RAF_RS05505 PF03471 Transporter associated domain RAF_RS05510 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal RAF_RS05510 PF01578 Cytochrome C assembly protein RAF_RS05530 PF03797 Autotransporter beta-domain RAF_RS05530 PF12334 Rickettsia outer membrane protein B RAF_RS05535 PF04607 Region found in RelA / SpoT proteins RAF_RS05535 PF02824 TGS domain RAF_RS05535 PF13291 ACT domain RAF_RS05540 PF00933 Glycosyl hydrolase family 3 N terminal domain RAF_RS05550 PF00216 Bacterial DNA-binding protein RAF_RS05560 PF00578 AhpC/TSA family RAF_RS05570 PF02606 Tetraacyldisaccharide-1-P 4'-kinase RAF_RS05575 PF01551 Peptidase family M23 RAF_RS05575 PF01476 LysM domain RAF_RS05575 PF08525 Opacity-associated protein A N-terminal motif RAF_RS05590 PF12826 Helix-hairpin-helix motif RAF_RS05590 PF03120 NAD-dependent DNA ligase OB-fold domain RAF_RS05590 PF01653 NAD-dependent DNA ligase adenylation domain RAF_RS05590 PF00533 BRCA1 C Terminus (BRCT) domain RAF_RS05595 PF01702 Queuine tRNA-ribosyltransferase RAF_RS05600 PF13291 ACT domain RAF_RS05600 PF02824 TGS domain RAF_RS05600 PF04607 Region found in RelA / SpoT proteins RAF_RS05635 PF05071 NADH ubiquinone oxidoreductase subunit NDUFA12 RAF_RS05640 PF00075 RNase H RAF_RS05655 PF01121 Dephospho-CoA kinase RAF_RS05660 PF00929 Exonuclease RAF_RS05665 PF02104 SURF1 family RAF_RS05670 PF00580 UvrD/REP helicase N-terminal domain RAF_RS05670 PF13361 UvrD-like helicase C-terminal domain RAF_RS05680 PF00698 Acyl transferase domain RAF_RS05785 PF03219 TLC ATP/ADP transporter RAF_RS05805 PF00571 CBS domain RAF_RS05805 PF03471 Transporter associated domain RAF_RS05810 PF02130 Uncharacterized protein family UPF0054 RAF_RS05825 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family RAF_RS05825 PF04055 Radical SAM superfamily RAF_RS05830 PF00464 Serine hydroxymethyltransferase RAF_RS05835 PF02230 Phospholipase/Carboxylesterase RAF_RS05840 PF00462 Glutaredoxin RAF_RS05845 PF00633 Helix-hairpin-helix motif RAF_RS05845 PF00730 HhH-GPD superfamily base excision DNA repair protein RAF_RS05845 PF10576 Iron-sulfur binding domain of endonuclease III RAF_RS05890 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RAF_RS05895 PF13458 Periplasmic binding protein RAF_RS05900 PF02416 mttA/Hcf106 family RAF_RS05905 PF04608 Phosphatidylglycerophosphatase A RAF_RS05910 PF00829 Ribosomal prokaryotic L21 protein RAF_RS05915 PF01016 Ribosomal L27 protein RAF_RS05920 PF00696 Amino acid kinase family RAF_RS05935 PF12706 Beta-lactamase superfamily domain RAF_RS05955 PF00083 Sugar (and other) transporter RAF_RS05955 PF07690 Major Facilitator Superfamily RAF_RS05960 PF05164 Cell division protein ZapA RAF_RS05965 PF13603 Leucyl-tRNA synthetase, Domain 2 RAF_RS05965 PF00133 tRNA synthetases class I (I, L, M and V) RAF_RS05965 PF08264 Anticodon-binding domain of tRNA RAF_RS05970 PF13464 Domain of unknown function (DUF4115) RAF_RS05975 PF05088 Bacterial NAD-glutamate dehydrogenase RAF_RS05980 PF12631 MnmE helical domain RAF_RS05980 PF01926 50S ribosome-binding GTPase RAF_RS05980 PF10396 GTP-binding protein TrmE N-terminus RAF_RS05985 PF17544 Family of unknown function (DUF5460) RAF_RS06005 PF00154 recA bacterial DNA recombination protein RAF_RS06015 PF00550 Phosphopantetheine attachment site RAF_RS06020 PF00109 Beta-ketoacyl synthase, N-terminal domain RAF_RS06020 PF02801 Beta-ketoacyl synthase, C-terminal domain RAF_RS06025 PF00005 ABC transporter RAF_RS06025 PF16326 ABC transporter C-terminal domain RAF_RS06025 PF12848 ABC transporter RAF_RS06045 PF00625 Guanylate kinase RAF_RS06050 PF01381 Helix-turn-helix RAF_RS06075 PF00691 OmpA family RAF_RS06080 PF00749 tRNA synthetases class I (E and Q), catalytic domain RAF_RS06085 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RAF_RS06085 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RAF_RS06090 PF01783 Ribosomal L32p protein family RAF_RS06100 PF02881 SRP54-type protein, helical bundle domain RAF_RS06100 PF00448 SRP54-type protein, GTPase domain RAF_RS06105 PF01367 5'-3' exonuclease, C-terminal SAM fold RAF_RS06105 PF00476 DNA polymerase family A RAF_RS06105 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RAF_RS06110 PF02772 S-adenosylmethionine synthetase, central domain RAF_RS06110 PF02773 S-adenosylmethionine synthetase, C-terminal domain RAF_RS06110 PF00438 S-adenosylmethionine synthetase, N-terminal domain RAF_RS06115 PF00438 S-adenosylmethionine synthetase, N-terminal domain RAF_RS06115 PF02772 S-adenosylmethionine synthetase, central domain RAF_RS06115 PF02773 S-adenosylmethionine synthetase, C-terminal domain RAF_RS06135 PF02811 PHP domain RAF_RS06135 PF14579 Helix-hairpin-helix motif RAF_RS06135 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RAF_RS06135 PF07733 Bacterial DNA polymerase III alpha NTPase domain RAF_RS06140 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RAF_RS06140 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RAF_RS06140 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RAF_RS06150 PF07690 Major Facilitator Superfamily RAF_RS06155 PF00902 Sec-independent protein translocase protein (TatC) RAF_RS06160 PF02403 Seryl-tRNA synthetase N-terminal domain RAF_RS06160 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RAF_RS06165 PF03135 CagE, TrbE, VirB family, component of type IV transporter system RAF_RS06175 PF03741 Integral membrane protein TerC family RAF_RS06185 PF13847 Methyltransferase domain RAF_RS06185 PF10119 Predicted methyltransferase regulatory domain RAF_RS06190 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system RAF_RS06195 PF00145 C-5 cytosine-specific DNA methylase RAF_RS06195 PF01381 Helix-turn-helix RAF_RS06200 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 RAF_RS06205 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RAF_RS06210 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RAF_RS06210 PF00361 Proton-conducting membrane transporter RAF_RS06215 PF00361 Proton-conducting membrane transporter RAF_RS06220 PF00005 ABC transporter RAF_RS06225 PF12838 4Fe-4S dicluster domain RAF_RS06230 PF00146 NADH dehydrogenase RAF_RS06235 PF00384 Molybdopterin oxidoreductase RAF_RS06235 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RAF_RS06235 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal RAF_RS06245 PF00330 Aconitase family (aconitate hydratase) RAF_RS06245 PF00694 Aconitase C-terminal domain RAF_RS06250 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RAF_RS06255 PF02874 ATP synthase alpha/beta family, beta-barrel domain RAF_RS06255 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RAF_RS06260 PF00231 ATP synthase RAF_RS06265 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RAF_RS06265 PF02874 ATP synthase alpha/beta family, beta-barrel domain RAF_RS06265 PF00306 ATP synthase alpha/beta chain, C terminal domain RAF_RS06270 PF00213 ATP synthase delta (OSCP) subunit RAF_RS06275 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RAF_RS06275 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAF_RS06280 PF00210 Ferritin-like domain RAF_RS06305 PF00905 Penicillin binding protein transpeptidase domain RAF_RS06310 PF00912 Transglycosylase RAF_RS06310 PF00905 Penicillin binding protein transpeptidase domain RAF_RS06310 PF17092 Penicillin-binding protein OB-like domain RAF_RS06315 PF00919 Uncharacterized protein family UPF0004 RAF_RS06315 PF04055 Radical SAM superfamily RAF_RS06315 PF01938 TRAM domain RAF_RS06340 PF00999 Sodium/hydrogen exchanger family RAF_RS06340 PF02254 TrkA-N domain RAF_RS06350 PF01722 BolA-like protein RAF_RS06355 PF03797 Autotransporter beta-domain RAF_RS06360 PF03797 Autotransporter beta-domain RAF_RS06430 PF01176 Translation initiation factor 1A / IF-1 RAF_RS06435 PF02545 Maf-like protein RAF_RS06440 PF01258 Prokaryotic dksA/traR C4-type zinc finger RAF_RS06445 PF02899 Phage integrase, N-terminal SAM-like domain RAF_RS06445 PF00589 Phage integrase family RAF_RS06455 PF13091 PLD-like domain RAF_RS06465 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus RAF_RS06470 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase RAF_RS06480 PF03797 Autotransporter beta-domain RAF_RS06490 PF13491 4TM region of DNA translocase FtsK/SpoIIIE RAF_RS06490 PF17854 FtsK alpha domain RAF_RS06490 PF09397 Ftsk gamma domain RAF_RS06490 PF01580 FtsK/SpoIIIE family RAF_RS06500 PF00557 Metallopeptidase family M24 RAF_RS06505 PF04002 RadC-like JAB domain RAF_RS06510 PF04002 RadC-like JAB domain RAF_RS06515 PF00953 Glycosyl transferase family 4 RAF_RS06520 PF05258 Dna[CI] antecedent, DciA RAF_RS06525 PF13505 Outer membrane protein beta-barrel domain RAF_RS06530 PF13505 Outer membrane protein beta-barrel domain RAF_RS06535 PF11953 Domain of unknown function (DUF3470) RAF_RS06535 PF12838 4Fe-4S dicluster domain RAF_RS06540 PF01578 Cytochrome C assembly protein RAF_RS06545 PF14437 MafB19-like deaminase RAF_RS06550 PF01545 Cation efflux family RAF_RS06550 PF16916 Dimerisation domain of Zinc Transporter RAF_RS06555 PF05433 Glycine zipper 2TM domain RAF_RS06555 PF16998 17 kDa outer membrane surface antigen RAF_RS06560 PF01161 Phosphatidylethanolamine-binding protein RAF_RS06565 PF00005 ABC transporter RAF_RS06595 PF17755 UvrA DNA-binding domain RAF_RS06595 PF17760 UvrA interaction domain RAF_RS06600 PF00436 Single-strand binding protein family RAF_RS06630 PF02594 Uncharacterised ACR, YggU family COG1872 RAF_RS06635 PF00183 Hsp90 protein RAF_RS06640 PF00155 Aminotransferase class I and II RAF_RS06650 PF05697 Bacterial trigger factor protein (TF) RAF_RS06650 PF05698 Bacterial trigger factor protein (TF) C-terminus RAF_RS06650 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RAF_RS06655 PF01926 50S ribosome-binding GTPase RAF_RS06655 PF01018 GTP1/OBG RAF_RS06660 PF00285 Citrate synthase, C-terminal domain RAF_RS06670 PF03167 Uracil DNA glycosylase superfamily RAF_RS06675 PF00849 RNA pseudouridylate synthase RAF_RS06675 PF01479 S4 domain RAF_RS06700 PF02390 Putative methyltransferase RAF_RS06700 PF05175 Methyltransferase small domain RAF_RS06700 PF17827 PrmC N-terminal domain RAF_RS06705 PF03481 Putative GTP-binding controlling metal-binding RAF_RS06705 PF01300 Telomere recombination RAF_RS06710 PF02092 Glycyl-tRNA synthetase beta subunit RAF_RS06710 PF05746 DALR anticodon binding domain RAF_RS06715 PF02091 Glycyl-tRNA synthetase alpha subunit RAF_RS06720 PF01850 PIN domain RAF_RS06730 PF02677 Epoxyqueuosine reductase QueH RAF_RS06740 PF17542 Uncharacterized RP853 RAF_RS06745 PF17460 Uncharacterized protein RP854 RAF_RS06755 PF01411 tRNA synthetases class II (A) RAF_RS06755 PF02272 DHHA1 domain RAF_RS06755 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RAF_RS06760 PF01416 tRNA pseudouridine synthase RAF_RS06765 PF03979 Sigma-70 factor, region 1.1 RAF_RS06765 PF00140 Sigma-70 factor, region 1.2 RAF_RS06765 PF04542 Sigma-70 region 2 RAF_RS06765 PF04539 Sigma-70 region 3 RAF_RS06765 PF04545 Sigma-70, region 4 RAF_RS06765 PF04546 Sigma-70, non-essential region RAF_RS06770 PF01807 CHC2 zinc finger RAF_RS06770 PF08275 DNA primase catalytic core, N-terminal domain RAF_RS06770 PF13662 Toprim domain RAF_RS06780 PF03449 Transcription elongation factor, N-terminal RAF_RS06780 PF01272 Transcription elongation factor, GreA/GreB, C-term RAF_RS06785 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch RAF_RS06790 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RAF_RS06790 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RAF_RS06795 PF03548 Outer membrane lipoprotein carrier protein LolA RAF_RS06800 PF12169 DNA polymerase III subunits gamma and tau domain III RAF_RS06805 PF02575 YbaB/EbfC DNA-binding family RAF_RS06830 PF00005 ABC transporter RAF_RS06845 PF04221 RelB antitoxin RAF_RS06850 PF03739 Lipopolysaccharide export system permease LptF/LptG RAF_RS06855 PF04364 DNA polymerase III chi subunit, HolC RAF_RS06865 PF01546 Peptidase family M20/M25/M40 RAF_RS06865 PF07687 Peptidase dimerisation domain RAF_RS06900 PF06965 Na+/H+ antiporter 1 RAF_RS06905 PF06965 Na+/H+ antiporter 1 RAF_RS06915 PF03099 Biotin/lipoate A/B protein ligase family RAF_RS06920 PF01510 N-acetylmuramoyl-L-alanine amidase RAF_RS06930 PF00886 Ribosomal protein S16 RAF_RS06935 PF00471 Ribosomal protein L33 RAF_RS06940 PF08676 MutL C terminal dimerisation domain RAF_RS06940 PF01119 DNA mismatch repair protein, C-terminal domain RAF_RS06945 PF00106 short chain dehydrogenase RAF_RS06955 PF08946 Osmosensory transporter coiled coil RAF_RS06955 PF00083 Sugar (and other) transporter RAF_RS06960 PF01218 Coproporphyrinogen III oxidase RAF_RS06975 PF03653 Uncharacterised protein family (UPF0093) RAF_RS06980 PF00762 Ferrochelatase RAF_RS06985 PF01208 Uroporphyrinogen decarboxylase (URO-D) RAF_RS07095 PF03330 Lytic transglycolase