RAF_RS00015 SM00382 ATPases associated with a variety of cellular activities RAF_RS00110 SM00869 Autotransporter beta-domain RAF_RS00170 SM01058 CarD-like/TRCF domain RAF_RS00305 SM00382 ATPases associated with a variety of cellular activities RAF_RS00305 SM01086 C-terminal, D2-small domain, of ClpB protein RAF_RS00325 SM00862 Transcriptional regulatory protein, C terminal RAF_RS00355 SM00382 ATPases associated with a variety of cellular activities RAF_RS00440 SM00562 RAF_RS00440 RAF_RS00445 SM01228 RAF_RS00445 RAF_RS00460 SM00470 ParB-like nuclease domain RAF_RS00465 SM00382 ATPases associated with a variety of cellular activities RAF_RS00490 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RAF_RS00495 SM00836 DALR anticodon binding domain RAF_RS00495 SM01016 Arginyl tRNA synthetase N terminal dom RAF_RS00505 SM00434 DNA Topoisomerase IV RAF_RS00530 SM00448 cheY-homologous receiver domain RAF_RS00530 SM00862 Transcriptional regulatory protein, C terminal RAF_RS00580 SM00869 Autotransporter beta-domain RAF_RS00585 SM00840 RAF_RS00585 RAF_RS00655 SM01005 Alanine racemase, C-terminal domain RAF_RS00665 SM00382 ATPases associated with a variety of cellular activities RAF_RS00735 SM00382 ATPases associated with a variety of cellular activities RAF_RS00800 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RAF_RS00810 SM00358 Double-stranded RNA binding motif RAF_RS00810 SM00535 Ribonuclease III family RAF_RS00850 SM00244 prohibitin homologues RAF_RS00855 SM00244 prohibitin homologues RAF_RS00860 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RAF_RS00865 SM00450 Rhodanese Homology Domain RAF_RS00900 SM00838 Elongation factor G C-terminus RAF_RS00900 SM00889 Elongation factor G, domain IV RAF_RS00915 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. RAF_RS00915 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. RAF_RS00920 SM00649 Ribosomal protein L11/L12 RAF_RS00945 SM00663 RNA polymerase I subunit A N-terminus RAF_RS00990 SM00903 Flavin reductase like domain RAF_RS00995 SM00062 Bacterial periplasmic substrate-binding proteins RAF_RS00995 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. RAF_RS01000 SM00845 GatB domain RAF_RS01060 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RAF_RS01110 SM00411 bacterial (prokaryotic) histone like domain RAF_RS01120 SM00382 ATPases associated with a variety of cellular activities RAF_RS01120 SM00962 SRP54-type protein, GTPase domain RAF_RS01120 SM00963 SRP54-type protein, helical bundle domain RAF_RS01150 SM00729 Elongator protein 3, MiaB family, Radical SAM RAF_RS01155 SM00248 ankyrin repeats RAF_RS01200 SM00861 Transketolase, pyrimidine binding domain RAF_RS01215 SM00028 Tetratricopeptide repeats RAF_RS01225 SM00271 DnaJ molecular chaperone homology domain RAF_RS01365 SM00271 DnaJ molecular chaperone homology domain RAF_RS01375 SM00487 DEAD-like helicases superfamily RAF_RS01375 SM00490 helicase superfamily c-terminal domain RAF_RS01390 SM00434 DNA Topoisomerase IV RAF_RS01485 SM00382 ATPases associated with a variety of cellular activities RAF_RS01535 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RAF_RS01605 SM00387 Histidine kinase-like ATPases RAF_RS01605 SM00433 TopoisomeraseII RAF_RS01610 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RAF_RS01610 SM00245 tail specific protease RAF_RS01615 SM00387 Histidine kinase-like ATPases RAF_RS01615 SM00388 His Kinase A (phosphoacceptor) domain RAF_RS01630 SM00564 beta-propeller repeat RAF_RS01675 SM00267 diguanylate cyclase RAF_RS01675 SM00448 cheY-homologous receiver domain RAF_RS01680 SM00841 Elongation factor P, C-terminal RAF_RS01680 SM01185 RAF_RS01680 RAF_RS01720 SM00052 Putative diguanylate phosphodiesterase RAF_RS01745 SM00842 Cell division protein FtsA RAF_RS01775 SM00316 Ribosomal protein S1-like RNA-binding domain RAF_RS01785 SM00363 S4 RNA-binding domain RAF_RS01805 SM00861 Transketolase, pyrimidine binding domain RAF_RS01825 SM00935 Outer membrane protein (OmpH-like) RAF_RS01830 SM01329 RAF_RS01830 RAF_RS01900 SM00937 RAF_RS01900 RAF_RS01905 SM00838 Elongation factor G C-terminus RAF_RS02090 SM00533 DNA-binding domain of DNA mismatch repair MUTS family RAF_RS02090 SM00534 ATPase domain of DNA mismatch repair MUTS family RAF_RS02205 SM00382 ATPases associated with a variety of cellular activities RAF_RS02210 SM00859 Semialdehyde dehydrogenase, NAD binding domain RAF_RS02230 SM00382 ATPases associated with a variety of cellular activities RAF_RS02230 SM01086 C-terminal, D2-small domain, of ClpB protein RAF_RS02275 SM01219 RAF_RS02275 RAF_RS02300 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain RAF_RS02300 SM00437 Bacterial DNA topoisomerase I DNA-binding domain RAF_RS02300 SM00493 RAF_RS02300 RAF_RS02320 SM00244 prohibitin homologues RAF_RS02335 SM00732 Likely ribonuclease with RNase H fold. RAF_RS02405 SM00363 S4 RNA-binding domain RAF_RS02405 SM01390 RAF_RS02405 RAF_RS02565 SM00382 ATPases associated with a variety of cellular activities RAF_RS02600 SM00919 Malic enzyme, NAD binding domain RAF_RS02600 SM01274 RAF_RS02600 RAF_RS02615 SM00966 SpoVT / AbrB like domain RAF_RS02745 SM00382 ATPases associated with a variety of cellular activities RAF_RS02750 SM00382 ATPases associated with a variety of cellular activities RAF_RS02990 SM00729 Elongator protein 3, MiaB family, Radical SAM RAF_RS03000 SM00873 B3/4 domain RAF_RS03000 SM00874 tRNA synthetase B5 domain RAF_RS03000 SM00896 Ferredoxin-fold anticodon binding domain RAF_RS03005 SM00480 DNA polymerase III beta subunit RAF_RS03025 SM00474 3'-5' exonuclease RAF_RS03045 SM00387 Histidine kinase-like ATPases RAF_RS03045 SM00388 His Kinase A (phosphoacceptor) domain RAF_RS03050 SM00448 cheY-homologous receiver domain RAF_RS03050 SM00862 Transcriptional regulatory protein, C terminal RAF_RS03060 SM01130 RAF_RS03060 RAF_RS03075 SM00881 CoA binding domain RAF_RS03090 SM00966 SpoVT / AbrB like domain RAF_RS03110 SM00978 RAF_RS03110 RAF_RS03140 SM00493 RAF_RS03140 RAF_RS03150 SM00849 Metallo-beta-lactamase superfamily RAF_RS03225 SM00382 ATPases associated with a variety of cellular activities RAF_RS03225 SM00464 Found in ATP-dependent protease La (LON) RAF_RS03360 SM00382 ATPases associated with a variety of cellular activities RAF_RS03375 SM00116 Domain in cystathionine beta-synthase and other proteins. RAF_RS03380 SM00316 Ribosomal protein S1-like RNA-binding domain RAF_RS03380 SM00322 K homology RNA-binding domain RAF_RS03385 SM01387 RAF_RS03385 RAF_RS03405 SM00530 Helix-turn-helix XRE-family like proteins RAF_RS03415 SM01230 RAF_RS03415 RAF_RS03440 SM01007 Class II Aldolase and Adducin N-terminal domain RAF_RS03530 SM00937 RAF_RS03530 RAF_RS03550 SM00357 Cold shock protein domain RAF_RS03550 SM00382 ATPases associated with a variety of cellular activities RAF_RS03550 SM00959 Rho termination factor, N-terminal domain RAF_RS03560 SM00411 bacterial (prokaryotic) histone like domain RAF_RS03605 SM00248 ankyrin repeats RAF_RS03610 SM00954 Region found in RelA / SpoT proteins RAF_RS03645 SM00316 Ribosomal protein S1-like RNA-binding domain RAF_RS03755 SM00257 Lysin motif RAF_RS03860 SM00563 Phosphate acyltransferases RAF_RS03925 SM00341 Helicase and RNase D C-terminal RAF_RS03925 SM00474 3'-5' exonuclease RAF_RS03965 SM01126 RAF_RS03965 RAF_RS04070 SM01004 Delta-aminolevulinic acid dehydratase RAF_RS04090 SM00487 DEAD-like helicases superfamily RAF_RS04090 SM00490 helicase superfamily c-terminal domain RAF_RS04120 SM00363 S4 RNA-binding domain RAF_RS04135 SM00382 ATPases associated with a variety of cellular activities RAF_RS04170 SM00316 Ribosomal protein S1-like RNA-binding domain RAF_RS04170 SM00322 K homology RNA-binding domain RAF_RS04195 SM00363 S4 RNA-binding domain RAF_RS04265 SM01359 RAF_RS04265 RAF_RS04265 SM01360 RAF_RS04265 RAF_RS04325 SM00382 ATPases associated with a variety of cellular activities RAF_RS04325 SM00448 cheY-homologous receiver domain RAF_RS04390 SM00465 GIY-YIG type nucleases (URI domain) RAF_RS04470 SM00957 SecA DEAD-like domain RAF_RS04470 SM00958 SecA preprotein cross-linking domain RAF_RS04485 SM01409 RAF_RS04485 RAF_RS04495 SM00387 Histidine kinase-like ATPases RAF_RS04495 SM00433 TopoisomeraseII RAF_RS04510 SM00924 MgtE intracellular N domain RAF_RS04555 SM01323 RAF_RS04555 RAF_RS04595 SM00487 DEAD-like helicases superfamily RAF_RS04595 SM00490 helicase superfamily c-terminal domain RAF_RS04610 SM00882 Coenzyme A transferase RAF_RS04615 SM00882 Coenzyme A transferase RAF_RS04650 SM00487 DEAD-like helicases superfamily RAF_RS04650 SM00490 helicase superfamily c-terminal domain RAF_RS04650 SM00982 RAF_RS04650 RAF_RS04650 SM01058 CarD-like/TRCF domain RAF_RS04660 SM00450 Rhodanese Homology Domain RAF_RS04665 SM00382 ATPases associated with a variety of cellular activities RAF_RS04665 SM00760 Bacterial dnaA protein helix-turn-helix domain RAF_RS04815 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAF_RS04815 SM00387 Histidine kinase-like ATPases RAF_RS04815 SM00388 His Kinase A (phosphoacceptor) domain RAF_RS04865 SM00878 Biotin carboxylase C-terminal domain RAF_RS04880 SM00563 Phosphate acyltransferases RAF_RS04915 SM00883 Chaperonin 10 Kd subunit RAF_RS05015 SM00662 RNA polymerases D RAF_RS05080 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. RAF_RS05085 SM01374 RAF_RS05085 RAF_RS05105 SM00322 K homology RNA-binding domain RAF_RS05120 SM01382 RAF_RS05120 RAF_RS05120 SM01383 RAF_RS05120 RAF_RS05140 SM01403 RAF_RS05140 RAF_RS05160 SM00967 RNA 2'-O ribose methyltransferase substrate binding RAF_RS05185 SM00864 Tubulin/FtsZ family, GTPase domain RAF_RS05185 SM00865 Tubulin/FtsZ family, C-terminal domain RAF_RS05200 SM00932 Scaffold protein Nfu/NifU N terminal RAF_RS05210 SM00487 DEAD-like helicases superfamily RAF_RS05210 SM00490 helicase superfamily c-terminal domain RAF_RS05215 SM00357 Cold shock protein domain RAF_RS05225 SM00650 Ribosomal RNA adenine dimethylases RAF_RS05310 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain RAF_RS05310 SM01232 RAF_RS05310 RAF_RS05450 SM00382 ATPases associated with a variety of cellular activities RAF_RS05450 SM00994 ClpX C4-type zinc finger RAF_RS05450 SM01086 C-terminal, D2-small domain, of ClpB protein RAF_RS05475 SM00382 ATPases associated with a variety of cellular activities RAF_RS05495 SM00382 ATPases associated with a variety of cellular activities RAF_RS05505 SM00116 Domain in cystathionine beta-synthase and other proteins. RAF_RS05505 SM01091 Transporter associated domain RAF_RS05530 SM00869 Autotransporter beta-domain RAF_RS05535 SM00954 Region found in RelA / SpoT proteins RAF_RS05550 SM00411 bacterial (prokaryotic) histone like domain RAF_RS05590 SM00292 breast cancer carboxy-terminal domain RAF_RS05590 SM00532 Ligase N family RAF_RS05660 SM00479 RAF_RS05660 RAF_RS05680 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RAF_RS05805 SM01091 Transporter associated domain RAF_RS05825 SM00729 Elongator protein 3, MiaB family, Radical SAM RAF_RS05845 SM00478 endonuclease III RAF_RS05845 SM00525 RAF_RS05845 RAF_RS05925 SM00530 Helix-turn-helix XRE-family like proteins RAF_RS06005 SM00382 ATPases associated with a variety of cellular activities RAF_RS06010 SM00822 RAF_RS06010 RAF_RS06020 SM00825 Beta-ketoacyl synthase RAF_RS06025 SM00382 ATPases associated with a variety of cellular activities RAF_RS06045 SM00072 Guanylate kinase homologues. RAF_RS06050 SM00530 Helix-turn-helix XRE-family like proteins RAF_RS06100 SM00382 ATPases associated with a variety of cellular activities RAF_RS06100 SM00962 SRP54-type protein, GTPase domain RAF_RS06100 SM00963 SRP54-type protein, helical bundle domain RAF_RS06105 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs RAF_RS06105 SM00475 5'-3' exonuclease RAF_RS06105 SM00482 DNA polymerase A domain RAF_RS06135 SM00481 DNA polymerase alpha chain like domain RAF_RS06140 SM00984 UDP binding domain RAF_RS06195 SM00530 Helix-turn-helix XRE-family like proteins RAF_RS06220 SM00382 ATPases associated with a variety of cellular activities RAF_RS06235 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RAF_RS06255 SM00382 ATPases associated with a variety of cellular activities RAF_RS06315 SM00729 Elongator protein 3, MiaB family, Radical SAM RAF_RS06335 SM00287 Bacterial SH3 domain homologues RAF_RS06455 SM00155 Phospholipase D. Active site motifs. RAF_RS06480 SM00869 Autotransporter beta-domain RAF_RS06490 SM00843 RAF_RS06490 RAF_RS06565 SM00382 ATPases associated with a variety of cellular activities RAF_RS06630 SM01152 RAF_RS06630 RAF_RS06635 SM00387 Histidine kinase-like ATPases RAF_RS06670 SM00986 Uracil DNA glycosylase superfamily RAF_RS06670 SM00987 UreE urease accessory protein, C-terminal domain RAF_RS06675 SM00363 S4 RNA-binding domain RAF_RS06755 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RAF_RS06770 SM00400 zinc finger RAF_RS06770 SM00493 RAF_RS06770 RAF_RS06790 SM01002 Alanine dehydrogenase/PNT, C-terminal domain RAF_RS06790 SM01003 Alanine dehydrogenase/PNT, N-terminal domain RAF_RS06800 SM00382 ATPases associated with a variety of cellular activities RAF_RS06830 SM00382 ATPases associated with a variety of cellular activities RAF_RS06835 SM00849 Metallo-beta-lactamase superfamily RAF_RS06840 SM00014 Acid phosphatase homologues RAF_RS06920 SM00644 RAF_RS06920 RAF_RS06940 SM00853 MutL C terminal dimerisation domain RAF_RS06940 SM01340 RAF_RS06940