RAF_RS00010	SSF52833	Thioredoxin-like
RAF_RS00015	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS00025	SSF51971	Nucleotide-binding domain
RAF_RS00025	SSF63380	Riboflavin synthase domain-like
RAF_RS00030	SSF50118	Cell growth inhibitor/plasmid maintenance toxic component
RAF_RS00035	SSF47598	Ribbon-helix-helix
RAF_RS00040	SSF51161	Trimeric LpxA-like enzymes
RAF_RS00045	SSF54637	Thioesterase/thiol ester dehydrase-isomerase
RAF_RS00050	SSF51161	Trimeric LpxA-like enzymes
RAF_RS00060	SSF51395	FMN-linked oxidoreductases
RAF_RS00065	SSF88713	Glycoside hydrolase/deacetylase
RAF_RS00075	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS00080	SSF53807	"Helical backbone" metal receptor
RAF_RS00085	SSF81301	Nucleotidyltransferase
RAF_RS00085	SSF81891	Poly A polymerase C-terminal region-like
RAF_RS00110	SSF103515	Autotransporter
RAF_RS00125	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS00130	SSF48452	TPR-like
RAF_RS00150	SSF81333	F1F0 ATP synthase subunit C
RAF_RS00155	SSF81336	F1F0 ATP synthase subunit A
RAF_RS00165	SSF52833	Thioredoxin-like
RAF_RS00170	SSF141259	CarD-like
RAF_RS00175	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_RS00180	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS00185	SSF53597	Dihydrofolate reductase-like
RAF_RS00190	SSF51717	Dihydropteroate synthetase-like
RAF_RS00195	SSF51717	Dihydropteroate synthetase-like
RAF_RS00200	SSF51717	Dihydropteroate synthetase-like
RAF_RS00200	SSF55083	6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
RAF_RS00205	SSF55083	6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
RAF_RS00220	SSF81901	HCP-like
RAF_RS00235	SSF143456	VC0467-like
RAF_RS00250	SSF103515	Autotransporter
RAF_RS00285	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_RS00305	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS00305	SSF81923	Double Clp-N motif
RAF_RS00315	SSF53067	Actin-like ATPase domain
RAF_RS00325	SSF46894	C-terminal effector domain of the bipartite response regulators
RAF_RS00335	SSF54995	Ribosomal protein S6
RAF_RS00340	SSF46911	Ribosomal protein S18
RAF_RS00345	SSF55653	Ribosomal protein L9 C-domain
RAF_RS00345	SSF55658	L9 N-domain-like
RAF_RS00350	SSF52402	Adenine nucleotide alpha hydrolases-like
RAF_RS00355	SSF140990	FtsH protease domain-like
RAF_RS00355	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS00360	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_RS00365	SSF46548	alpha-helical ferredoxin
RAF_RS00365	SSF54292	2Fe-2S ferredoxin-like
RAF_RS00375	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_RS00385	SSF50182	Sm-like ribonucleoproteins
RAF_RS00410	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_RS00425	SSF56420	Peptide deformylase
RAF_RS00430	SSF103473	MFS general substrate transporter
RAF_RS00435	SSF103473	MFS general substrate transporter
RAF_RS00440	SSF54919	Nucleoside diphosphate kinase, NDK
RAF_RS00445	SSF51905	FAD/NAD(P)-binding domain
RAF_RS00450	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_RS00455	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS00460	SSF109709	KorB DNA-binding domain-like
RAF_RS00460	SSF110849	ParB/Sulfiredoxin
RAF_RS00465	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS00475	SSF51569	Aldolase
RAF_RS00485	SSF89360	HesB-like domain
RAF_RS00490	SSF109604	HD-domain/PDEase-like
RAF_RS00495	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
RAF_RS00495	SSF52374	Nucleotidylyl transferase
RAF_RS00495	SSF55190	Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
RAF_RS00500	SSF110997	Sporulation related repeat
RAF_RS00505	SSF101904	GyrA/ParC C-terminal domain-like
RAF_RS00505	SSF56719	Type II DNA topoisomerase
RAF_RS00515	SSF56935	Porins
RAF_RS00520	SSF51283	dUTPase-like
RAF_RS00525	SSF54611	SecB-like
RAF_RS00530	SSF52172	CheY-like
RAF_RS00535	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
RAF_RS00545	SSF52467	DHS-like NAD/FAD-binding domain
RAF_RS00550	SSF56925	OMPA-like
RAF_RS00555	SSF103481	Multidrug resistance efflux transporter EmrE
RAF_RS00560	SSF103473	MFS general substrate transporter
RAF_RS00580	SSF101447	Formin homology 2 domain (FH2 domain)
RAF_RS00580	SSF103515	Autotransporter
RAF_RS00585	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
RAF_RS00585	SSF52374	Nucleotidylyl transferase
RAF_RS00590	SSF52313	Ribosomal protein S2
RAF_RS00595	SSF46934	UBA-like
RAF_RS00595	SSF54713	Elongation factor Ts (EF-Ts), dimerisation domain
RAF_RS00615	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RAF_RS00625	SSF53383	PLP-dependent transferases
RAF_RS00630	SSF48452	TPR-like
RAF_RS00630	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_RS00645	SSF53271	PRTase-like
RAF_RS00650	SSF53271	PRTase-like
RAF_RS00655	SSF50621	Alanine racemase C-terminal domain-like
RAF_RS00655	SSF51419	PLP-binding barrel
RAF_RS00665	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS00695	SSF64438	CNF1/YfiH-like putative cysteine hydrolases
RAF_RS00705	SSF143800	L28p-like
RAF_RS00710	SSF143800	L28p-like
RAF_RS00720	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS00725	SSF53633	Carbamate kinase-like
RAF_RS00735	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS00780	SSF75217	alpha/beta knot
RAF_RS00785	SSF50104	Translation proteins SH3-like domain
RAF_RS00795	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
RAF_RS00800	SSF140490	Nqo1C-terminal domain-like
RAF_RS00800	SSF142019	Nqo1 FMN-binding domain-like
RAF_RS00800	SSF142984	Nqo1 middle domain-like
RAF_RS00805	SSF51306	LexA/Signal peptidase
RAF_RS00810	SSF54768	dsRNA-binding domain-like
RAF_RS00810	SSF69065	RNase III domain-like
RAF_RS00815	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS00815	SSF54814	Prokaryotic type KH domain (KH-domain type II)
RAF_RS00820	SSF53098	Ribonuclease H-like
RAF_RS00825	SSF75217	alpha/beta knot
RAF_RS00830	SSF81593	Nucleotidyltransferase substrate binding subunit/domain
RAF_RS00840	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RAF_RS00845	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS00850	SSF117892	Band 7/SPFH domain
RAF_RS00855	SSF117892	Band 7/SPFH domain
RAF_RS00860	SSF50156	PDZ domain-like
RAF_RS00860	SSF50494	Trypsin-like serine proteases
RAF_RS00865	SSF52821	Rhodanese/Cell cycle control phosphatase
RAF_RS00870	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
RAF_RS00875	SSF81343	Fumarate reductase respiratory complex transmembrane subunits
RAF_RS00880	SSF46977	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
RAF_RS00880	SSF51905	FAD/NAD(P)-binding domain
RAF_RS00880	SSF56425	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
RAF_RS00885	SSF161098	MetI-like
RAF_RS00890	SSF50249	Nucleic acid-binding proteins
RAF_RS00895	SSF47973	Ribosomal protein S7
RAF_RS00900	SSF50447	Translation proteins
RAF_RS00900	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS00900	SSF54211	Ribosomal protein S5 domain 2-like
RAF_RS00900	SSF54980	EF-G C-terminal domain-like
RAF_RS00915	SSF50104	Translation proteins SH3-like domain
RAF_RS00915	SSF82679	N-utilization substance G protein NusG, N-terminal domain
RAF_RS00920	SSF46906	Ribosomal protein L11, C-terminal domain
RAF_RS00920	SSF54747	Ribosomal L11/L12e N-terminal domain
RAF_RS00925	SSF56808	Ribosomal protein L1
RAF_RS00930	SSF160369	Ribosomal protein L10-like
RAF_RS00935	SSF48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain
RAF_RS00935	SSF54736	ClpS-like
RAF_RS00940	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
RAF_RS00945	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase
RAF_RS00955	SSF52949	Macro domain-like
RAF_RS00955	SSF53187	Zn-dependent exopeptidases
RAF_RS00960	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS00970	SSF50249	Nucleic acid-binding proteins
RAF_RS00970	SSF55261	GAD domain-like
RAF_RS00970	SSF55681	Class II aaRS and biotin synthetases
RAF_RS00985	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_RS00985	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
RAF_RS00990	SSF50475	FMN-binding split barrel
RAF_RS00995	SSF53850	Periplasmic binding protein-like II
RAF_RS01000	SSF55931	Glutamine synthetase/guanido kinase
RAF_RS01000	SSF89095	GatB/YqeY motif
RAF_RS01005	SSF75304	Amidase signature (AS) enzymes
RAF_RS01010	SSF141000	Glu-tRNAGln amidotransferase C subunit
RAF_RS01015	SSF55194	Ribosome recycling factor, RRF
RAF_RS01020	SSF53633	Carbamate kinase-like
RAF_RS01030	SSF103473	MFS general substrate transporter
RAF_RS01060	SSF50156	PDZ domain-like
RAF_RS01065	SSF48013	NusB-like
RAF_RS01070	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_RS01075	SSF53474	alpha/beta-Hydrolases
RAF_RS01085	SSF55961	Bet v1-like
RAF_RS01095	SSF75217	alpha/beta knot
RAF_RS01095	SSF88697	PUA domain-like
RAF_RS01105	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
RAF_RS01105	SSF82714	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
RAF_RS01105	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
RAF_RS01110	SSF47729	IHF-like DNA-binding proteins
RAF_RS01115	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS01120	SSF47446	Signal peptide-binding domain
RAF_RS01120	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS01145	SSF50993	Peptidase/esterase 'gauge' domain
RAF_RS01150	SSF102114	Radical SAM enzymes
RAF_RS01155	SSF48403	Ankyrin repeat
RAF_RS01180	SSF118215	Proton glutamate symport protein
RAF_RS01185	SSF54913	GlnB-like
RAF_RS01190	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
RAF_RS01195	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
RAF_RS01195	SSF51230	Single hybrid motif
RAF_RS01195	SSF52777	CoA-dependent acyltransferases
RAF_RS01200	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
RAF_RS01205	SSF55486	Metalloproteases ("zincins"), catalytic domain
RAF_RS01210	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS01215	SSF48452	TPR-like
RAF_RS01220	SSF140376	ChaB-like
RAF_RS01225	SSF46565	Chaperone J-domain
RAF_RS01225	SSF49493	HSP40/DnaJ peptide-binding domain
RAF_RS01225	SSF57938	DnaJ/Hsp40 cysteine-rich domain
RAF_RS01230	SSF100920	Heat shock protein 70kD (HSP70), peptide-binding domain
RAF_RS01230	SSF100934	Heat shock protein 70kD (HSP70), C-terminal subdomain
RAF_RS01230	SSF53067	Actin-like ATPase domain
RAF_RS01235	SSF50156	PDZ domain-like
RAF_RS01235	SSF50494	Trypsin-like serine proteases
RAF_RS01255	SSF48019	post-AAA+ oligomerization domain-like
RAF_RS01255	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS01260	SSF47240	Ferritin-like
RAF_RS01265	SSF81452	Cytochrome c oxidase subunit III-like
RAF_RS01280	SSF51161	Trimeric LpxA-like enzymes
RAF_RS01295	SSF53955	Lysozyme-like
RAF_RS01295	SSF56601	beta-lactamase/transpeptidase-like
RAF_RS01340	SSF52402	Adenine nucleotide alpha hydrolases-like
RAF_RS01345	SSF53850	Periplasmic binding protein-like II
RAF_RS01355	SSF54292	2Fe-2S ferredoxin-like
RAF_RS01360	SSF100920	Heat shock protein 70kD (HSP70), peptide-binding domain
RAF_RS01360	SSF100934	Heat shock protein 70kD (HSP70), C-terminal subdomain
RAF_RS01360	SSF53067	Actin-like ATPase domain
RAF_RS01365	SSF46565	Chaperone J-domain
RAF_RS01365	SSF47144	HSC20 (HSCB), C-terminal oligomerisation domain
RAF_RS01370	SSF53098	Ribonuclease H-like
RAF_RS01375	SSF46600	C-terminal UvrC-binding domain of UvrB
RAF_RS01375	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS01380	SSF52833	Thioredoxin-like
RAF_RS01390	SSF101904	GyrA/ParC C-terminal domain-like
RAF_RS01390	SSF56719	Type II DNA topoisomerase
RAF_RS01400	SSF118215	Proton glutamate symport protein
RAF_RS01410	SSF118215	Proton glutamate symport protein
RAF_RS01425	SSF140319	IscX-like
RAF_RS01430	SSF56420	Peptide deformylase
RAF_RS01435	SSF50486	FMT C-terminal domain-like
RAF_RS01435	SSF53328	Formyltransferase
RAF_RS01460	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS01470	SSF111337	QueA-like
RAF_RS01485	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS01485	SSF90123	ABC transporter transmembrane region
RAF_RS01505	SSF143120	YefM-like
RAF_RS01510	SSF143011	RelE-like
RAF_RS01515	SSF53448	Nucleotide-diphospho-sugar transferases
RAF_RS01520	SSF63411	LuxS/MPP-like metallohydrolase
RAF_RS01525	SSF56104	SAICAR synthase-like
RAF_RS01535	SSF52954	Class II aaRS ABD-related
RAF_RS01535	SSF55186	ThrRS/AlaRS common domain
RAF_RS01535	SSF55681	Class II aaRS and biotin synthetases
RAF_RS01535	SSF81271	TGS-like
RAF_RS01545	SSF90123	ABC transporter transmembrane region
RAF_RS01550	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS01555	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS01585	SSF56954	Outer membrane efflux proteins (OEP)
RAF_RS01600	SSF48403	Ankyrin repeat
RAF_RS01605	SSF54211	Ribosomal protein S5 domain 2-like
RAF_RS01605	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RAF_RS01605	SSF56719	Type II DNA topoisomerase
RAF_RS01610	SSF50156	PDZ domain-like
RAF_RS01610	SSF52096	ClpP/crotonase
RAF_RS01615	SSF47384	Homodimeric domain of signal transducing histidine kinase
RAF_RS01615	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RAF_RS01620	SSF48452	TPR-like
RAF_RS01630	SSF50998	Quinoprotein alcohol dehydrogenase-like
RAF_RS01635	SSF52161	Ribosomal protein L13
RAF_RS01640	SSF54211	Ribosomal protein S5 domain 2-like
RAF_RS01650	SSF55166	Hedgehog/DD-peptidase
RAF_RS01655	SSF55166	Hedgehog/DD-peptidase
RAF_RS01670	SSF55811	Nudix
RAF_RS01675	SSF52172	CheY-like
RAF_RS01675	SSF55073	Nucleotide cyclase
RAF_RS01680	SSF50104	Translation proteins SH3-like domain
RAF_RS01680	SSF50249	Nucleic acid-binding proteins
RAF_RS01685	SSF56655	Carbohydrate phosphatase
RAF_RS01705	SSF111369	HlyD-like secretion proteins
RAF_RS01715	SSF82657	BolA-like
RAF_RS01720	SSF141868	EAL domain-like
RAF_RS01725	SSF51984	MurCD N-terminal domain
RAF_RS01725	SSF53244	MurD-like peptide ligases, peptide-binding domain
RAF_RS01725	SSF53623	MurD-like peptide ligases, catalytic domain
RAF_RS01730	SSF56176	FAD-binding/transporter-associated domain-like
RAF_RS01730	SSF56194	Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
RAF_RS01735	SSF52440	PreATP-grasp domain
RAF_RS01735	SSF56059	Glutathione synthetase ATP-binding domain-like
RAF_RS01745	SSF53067	Actin-like ATPase domain
RAF_RS01755	SSF46626	Cytochrome c
RAF_RS01765	SSF54211	Ribosomal protein S5 domain 2-like
RAF_RS01770	SSF103473	MFS general substrate transporter
RAF_RS01775	SSF50249	Nucleic acid-binding proteins
RAF_RS01785	SSF55120	Pseudouridine synthase
RAF_RS01785	SSF55174	Alpha-L RNA-binding motif
RAF_RS01790	SSF56601	beta-lactamase/transpeptidase-like
RAF_RS01795	SSF56219	DNase I-like
RAF_RS01800	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
RAF_RS01805	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)
RAF_RS01805	SSF52922	TK C-terminal domain-like
RAF_RS01810	SSF50447	Translation proteins
RAF_RS01810	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS01810	SSF54980	EF-G C-terminal domain-like
RAF_RS01825	SSF111384	OmpH-like
RAF_RS01830	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
RAF_RS01855	SSF50022	ISP domain
RAF_RS01860	SSF81342	Transmembrane di-heme cytochromes
RAF_RS01860	SSF81648	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
RAF_RS01865	SSF46626	Cytochrome c
RAF_RS01865	SSF81496	Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
RAF_RS01880	SSF49764	HSP20-like chaperones
RAF_RS01900	SSF75620	Release factor
RAF_RS01905	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS01905	SSF54980	EF-G C-terminal domain-like
RAF_RS01940	SSF48371	ARM repeat
RAF_RS01945	SSF109604	HD-domain/PDEase-like
RAF_RS01960	SSF50993	Peptidase/esterase 'gauge' domain
RAF_RS01960	SSF53474	alpha/beta-Hydrolases
RAF_RS01970	SSF88723	PIN domain-like
RAF_RS02005	SSF54427	NTF2-like
RAF_RS02015	SSF54427	NTF2-like
RAF_RS02030	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS02035	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS02040	SSF53067	Actin-like ATPase domain
RAF_RS02085	SSF56655	Carbohydrate phosphatase
RAF_RS02090	SSF48334	DNA repair protein MutS, domain III
RAF_RS02090	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS02090	SSF53150	DNA repair protein MutS, domain II
RAF_RS02090	SSF55271	DNA repair protein MutS, domain I
RAF_RS02095	SSF89623	Ribose/Galactose isomerase RpiB/AlsB
RAF_RS02100	SSF51261	Duplicated hybrid motif
RAF_RS02110	SSF69796	Thymidylate synthase-complementing protein Thy1
RAF_RS02115	SSF52964	TolB, N-terminal domain
RAF_RS02115	SSF69304	Tricorn protease N-terminal domain
RAF_RS02120	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
RAF_RS02120	SSF88946	Sigma2 domain of RNA polymerase sigma factors
RAF_RS02125	SSF110111	Ctag/Cox11
RAF_RS02130	SSF53448	Nucleotide-diphospho-sugar transferases
RAF_RS02135	SSF52402	Adenine nucleotide alpha hydrolases-like
RAF_RS02145	SSF52954	Class II aaRS ABD-related
RAF_RS02145	SSF55681	Class II aaRS and biotin synthetases
RAF_RS02150	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS02185	SSF74653	TolA/TonB C-terminal domain
RAF_RS02190	SSF109604	HD-domain/PDEase-like
RAF_RS02195	SSF103473	MFS general substrate transporter
RAF_RS02205	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS02205	SSF90123	ABC transporter transmembrane region
RAF_RS02210	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_RS02210	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
RAF_RS02215	SSF54197	HIT-like
RAF_RS02225	SSF56235	N-terminal nucleophile aminohydrolases (Ntn hydrolases)
RAF_RS02230	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS02245	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS02260	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RAF_RS02275	SSF55387	Frataxin/Nqo15-like
RAF_RS02285	SSF55486	Metalloproteases ("zincins"), catalytic domain
RAF_RS02295	SSF48163	An anticodon-binding domain of class I aminoacyl-tRNA synthetases
RAF_RS02295	SSF52374	Nucleotidylyl transferase
RAF_RS02300	SSF56712	Prokaryotic type I DNA topoisomerase
RAF_RS02300	SSF57783	Zinc beta-ribbon
RAF_RS02305	SSF102405	MCP/YpsA-like
RAF_RS02310	SSF102405	MCP/YpsA-like
RAF_RS02315	SSF52833	Thioredoxin-like
RAF_RS02320	SSF117892	Band 7/SPFH domain
RAF_RS02330	SSF53649	Alkaline phosphatase-like
RAF_RS02335	SSF53098	Ribonuclease H-like
RAF_RS02340	SSF47413	lambda repressor-like DNA-binding domains
RAF_RS02350	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_RS02355	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_RS02360	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RAF_RS02365	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RAF_RS02375	SSF53448	Nucleotide-diphospho-sugar transferases
RAF_RS02380	SSF111369	HlyD-like secretion proteins
RAF_RS02390	SSF53474	alpha/beta-Hydrolases
RAF_RS02395	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RAF_RS02405	SSF55174	Alpha-L RNA-binding motif
RAF_RS02425	SSF48439	Protein prenylyltransferase
RAF_RS02435	SSF50346	PRC-barrel domain
RAF_RS02435	SSF50447	Translation proteins
RAF_RS02445	SSF116842	XseB-like
RAF_RS02465	SSF50486	FMT C-terminal domain-like
RAF_RS02470	SSF52833	Thioredoxin-like
RAF_RS02475	SSF56762	HydB/Nqo4-like
RAF_RS02480	SSF143243	Nqo5-like
RAF_RS02485	SSF56770	HydA/Nqo6-like
RAF_RS02520	SSF56349	DNA breaking-rejoining enzymes
RAF_RS02540	SSF56317	Carbon-nitrogen hydrolase
RAF_RS02550	SSF47090	PGBD-like
RAF_RS02550	SSF55846	N-acetylmuramoyl-L-alanine amidase-like
RAF_RS02555	SSF53822	Periplasmic binding protein-like I
RAF_RS02565	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS02585	SSF48403	Ankyrin repeat
RAF_RS02590	SSF48163	An anticodon-binding domain of class I aminoacyl-tRNA synthetases
RAF_RS02590	SSF52374	Nucleotidylyl transferase
RAF_RS02600	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_RS02600	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
RAF_RS02600	SSF53659	Isocitrate/Isopropylmalate dehydrogenase-like
RAF_RS02610	SSF88723	PIN domain-like
RAF_RS02615	SSF89447	AbrB/MazE/MraZ-like
RAF_RS02620	SSF103473	MFS general substrate transporter
RAF_RS02660	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_RS02660	SSF56327	LDH C-terminal domain-like
RAF_RS02680	SSF52317	Class I glutamine amidotransferase-like
RAF_RS02680	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS02685	SSF53448	Nucleotide-diphospho-sugar transferases
RAF_RS02705	SSF81442	Cytochrome c oxidase subunit I-like
RAF_RS02710	SSF55620	Tetrahydrobiopterin biosynthesis enzymes-like
RAF_RS02715	SSF52954	Class II aaRS ABD-related
RAF_RS02715	SSF55681	Class II aaRS and biotin synthetases
RAF_RS02720	SSF140931	Fic-like
RAF_RS02730	SSF46929	DNA helicase RuvA subunit, C-terminal domain
RAF_RS02730	SSF47781	RuvA domain 2-like
RAF_RS02730	SSF50249	Nucleic acid-binding proteins
RAF_RS02745	SSF46785	"Winged helix" DNA-binding domain
RAF_RS02745	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS02750	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS02750	SSF90123	ABC transporter transmembrane region
RAF_RS02755	SSF103473	MFS general substrate transporter
RAF_RS02760	SSF56601	beta-lactamase/transpeptidase-like
RAF_RS02765	SSF50685	Barwin-like endoglucanases
RAF_RS02785	SSF49503	Cupredoxins
RAF_RS02790	SSF54534	FKBP-like
RAF_RS02795	SSF49482	Aromatic compound dioxygenase
RAF_RS02800	SSF52833	Thioredoxin-like
RAF_RS02805	SSF52096	ClpP/crotonase
RAF_RS02810	SSF51283	dUTPase-like
RAF_RS02815	SSF48435	Bacterial muramidases
RAF_RS02815	SSF53955	Lysozyme-like
RAF_RS02825	SSF141986	LD-carboxypeptidase A C-terminal domain-like
RAF_RS02825	SSF52317	Class I glutamine amidotransferase-like
RAF_RS02830	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS02830	SSF52980	Restriction endonuclease-like
RAF_RS02840	SSF52317	Class I glutamine amidotransferase-like
RAF_RS02845	SSF81442	Cytochrome c oxidase subunit I-like
RAF_RS02850	SSF51161	Trimeric LpxA-like enzymes
RAF_RS02855	SSF49503	Cupredoxins
RAF_RS02855	SSF81464	Cytochrome c oxidase subunit II-like, transmembrane region
RAF_RS02865	SSF51261	Duplicated hybrid motif
RAF_RS02880	SSF51984	MurCD N-terminal domain
RAF_RS02880	SSF53244	MurD-like peptide ligases, peptide-binding domain
RAF_RS02880	SSF53623	MurD-like peptide ligases, catalytic domain
RAF_RS02890	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RAF_RS02920	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
RAF_RS02925	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
RAF_RS02935	SSF82693	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
RAF_RS02955	SSF56954	Outer membrane efflux proteins (OEP)
RAF_RS02960	SSF56954	Outer membrane efflux proteins (OEP)
RAF_RS02965	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RAF_RS02985	SSF54506	Diaminopimelate epimerase-like
RAF_RS02990	SSF102114	Radical SAM enzymes
RAF_RS02995	SSF46589	tRNA-binding arm
RAF_RS02995	SSF55681	Class II aaRS and biotin synthetases
RAF_RS03000	SSF46955	Putative DNA-binding domain
RAF_RS03000	SSF50249	Nucleic acid-binding proteins
RAF_RS03000	SSF54991	Anticodon-binding domain of PheRS
RAF_RS03000	SSF55681	Class II aaRS and biotin synthetases
RAF_RS03000	SSF56037	PheT/TilS domain
RAF_RS03005	SSF55979	DNA clamp
RAF_RS03020	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
RAF_RS03020	SSF50677	ValRS/IleRS/LeuRS editing domain
RAF_RS03020	SSF52374	Nucleotidylyl transferase
RAF_RS03025	SSF53098	Ribonuclease H-like
RAF_RS03040	SSF64005	Undecaprenyl diphosphate synthase
RAF_RS03045	SSF47384	Homodimeric domain of signal transducing histidine kinase
RAF_RS03045	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RAF_RS03050	SSF46894	C-terminal effector domain of the bipartite response regulators
RAF_RS03050	SSF52172	CheY-like
RAF_RS03055	SSF56752	D-aminoacid aminotransferase-like PLP-dependent enzymes
RAF_RS03060	SSF51569	Aldolase
RAF_RS03065	SSF74982	Small protein B (SmpB)
RAF_RS03070	SSF52833	Thioredoxin-like
RAF_RS03075	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_RS03075	SSF52210	Succinyl-CoA synthetase domains
RAF_RS03080	SSF52210	Succinyl-CoA synthetase domains
RAF_RS03080	SSF56059	Glutathione synthetase ATP-binding domain-like
RAF_RS03085	SSF88723	PIN domain-like
RAF_RS03090	SSF89447	AbrB/MazE/MraZ-like
RAF_RS03100	SSF81342	Transmembrane di-heme cytochromes
RAF_RS03105	SSF53474	alpha/beta-Hydrolases
RAF_RS03105	SSF82171	DPP6 N-terminal domain-like
RAF_RS03110	SSF54427	NTF2-like
RAF_RS03125	SSF89919	Ribosome-binding factor A, RbfA
RAF_RS03140	SSF111304	Recombination protein RecR
RAF_RS03145	SSF111331	NAD kinase/diacylglycerol kinase-like
RAF_RS03150	SSF56281	Metallo-hydrolase/oxidoreductase
RAF_RS03155	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
RAF_RS03155	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_RS03165	SSF53474	alpha/beta-Hydrolases
RAF_RS03170	SSF51905	FAD/NAD(P)-binding domain
RAF_RS03190	SSF53720	ALDH-like
RAF_RS03200	SSF53448	Nucleotide-diphospho-sugar transferases
RAF_RS03205	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS03220	SSF53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes
RAF_RS03225	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS03225	SSF54211	Ribosomal protein S5 domain 2-like
RAF_RS03225	SSF88697	PUA domain-like
RAF_RS03255	SSF69754	Ribosome binding protein Y (YfiA homologue)
RAF_RS03260	SSF51161	Trimeric LpxA-like enzymes
RAF_RS03265	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_RS03265	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
RAF_RS03270	SSF51905	FAD/NAD(P)-binding domain
RAF_RS03315	SSF48168	R1 subunit of ribonucleotide reductase, N-terminal domain
RAF_RS03315	SSF51998	PFL-like glycyl radical enzymes
RAF_RS03330	SSF47240	Ferritin-like
RAF_RS03335	SSF141571	Pentapeptide repeat-like
RAF_RS03350	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS03355	SSF53738	Phosphoglucomutase, first 3 domains
RAF_RS03355	SSF55957	Phosphoglucomutase, C-terminal domain
RAF_RS03360	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS03375	SSF53697	SIS domain
RAF_RS03380	SSF46915	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
RAF_RS03380	SSF50249	Nucleic acid-binding proteins
RAF_RS03380	SSF54211	Ribosomal protein S5 domain 2-like
RAF_RS03380	SSF54791	Eukaryotic type KH-domain (KH-domain type I)
RAF_RS03380	SSF55666	Ribonuclease PH domain 2-like
RAF_RS03385	SSF47060	S15/NS1 RNA-binding domain
RAF_RS03390	SSF55120	Pseudouridine synthase
RAF_RS03405	SSF47413	lambda repressor-like DNA-binding domains
RAF_RS03415	SSF55931	Glutamine synthetase/guanido kinase
RAF_RS03420	SSF64438	CNF1/YfiH-like putative cysteine hydrolases
RAF_RS03425	SSF56420	Peptide deformylase
RAF_RS03435	SSF88723	PIN domain-like
RAF_RS03440	SSF53639	AraD/HMP-PK domain-like
RAF_RS03450	SSF51621	Phosphoenolpyruvate/pyruvate domain
RAF_RS03450	SSF52009	Phosphohistidine domain
RAF_RS03450	SSF56059	Glutathione synthetase ATP-binding domain-like
RAF_RS03455	SSF47616	GST C-terminal domain-like
RAF_RS03455	SSF52833	Thioredoxin-like
RAF_RS03460	SSF52317	Class I glutamine amidotransferase-like
RAF_RS03470	SSF53244	MurD-like peptide ligases, peptide-binding domain
RAF_RS03470	SSF53623	MurD-like peptide ligases, catalytic domain
RAF_RS03480	SSF46609	Fe,Mn superoxide dismutase (SOD), N-terminal domain
RAF_RS03480	SSF54719	Fe,Mn superoxide dismutase (SOD), C-terminal domain
RAF_RS03485	SSF52151	FabD/lysophospholipase-like
RAF_RS03495	SSF55681	Class II aaRS and biotin synthetases
RAF_RS03520	SSF54364	Translation initiation factor IF3, N-terminal domain
RAF_RS03520	SSF55200	Translation initiation factor IF3, C-terminal domain
RAF_RS03525	SSF47005	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
RAF_RS03525	SSF51230	Single hybrid motif
RAF_RS03525	SSF52777	CoA-dependent acyltransferases
RAF_RS03530	SSF75620	Release factor
RAF_RS03540	SSF64182	DHH phosphoesterases
RAF_RS03545	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_RS03550	SSF50249	Nucleic acid-binding proteins
RAF_RS03550	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS03550	SSF68912	Rho N-terminal domain-like
RAF_RS03555	SSF52096	ClpP/crotonase
RAF_RS03560	SSF47729	IHF-like DNA-binding proteins
RAF_RS03595	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS03605	SSF48403	Ankyrin repeat
RAF_RS03610	SSF81301	Nucleotidyltransferase
RAF_RS03625	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_RS03640	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS03645	SSF50249	Nucleic acid-binding proteins
RAF_RS03650	SSF52096	ClpP/crotonase
RAF_RS03665	SSF51395	FMN-linked oxidoreductases
RAF_RS03670	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RAF_RS03680	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RAF_RS03725	SSF46785	"Winged helix" DNA-binding domain
RAF_RS03730	SSF53383	PLP-dependent transferases
RAF_RS03735	SSF53383	PLP-dependent transferases
RAF_RS03740	SSF82649	SufE/NifU
RAF_RS03745	SSF89360	HesB-like domain
RAF_RS03755	SSF54106	LysM domain
RAF_RS03765	SSF53092	Creatinase/prolidase N-terminal domain
RAF_RS03765	SSF55920	Creatinase/aminopeptidase
RAF_RS03780	SSF48576	Terpenoid synthases
RAF_RS03810	SSF103473	MFS general substrate transporter
RAF_RS03825	SSF69618	HemD-like
RAF_RS03840	SSF53474	alpha/beta-Hydrolases
RAF_RS03860	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
RAF_RS03865	SSF52374	Nucleotidylyl transferase
RAF_RS03885	SSF53850	Periplasmic binding protein-like II
RAF_RS03885	SSF54782	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
RAF_RS03890	SSF141986	LD-carboxypeptidase A C-terminal domain-like
RAF_RS03890	SSF52317	Class I glutamine amidotransferase-like
RAF_RS03900	SSF48403	Ankyrin repeat
RAF_RS03915	SSF103025	Folate-binding domain
RAF_RS03925	SSF47819	HRDC-like
RAF_RS03925	SSF53098	Ribonuclease H-like
RAF_RS03935	SSF100950	NagB/RpiA/CoA transferase-like
RAF_RS03940	SSF51905	FAD/NAD(P)-binding domain
RAF_RS03940	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
RAF_RS03945	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_RS03955	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_RS03975	SSF53955	Lysozyme-like
RAF_RS03990	SSF57840	Ribosomal protein L36
RAF_RS03995	SSF75625	YebC-like
RAF_RS04000	SSF53448	Nucleotide-diphospho-sugar transferases
RAF_RS04025	SSF101386	all-alpha NTP pyrophosphatases
RAF_RS04030	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RAF_RS04070	SSF51569	Aldolase
RAF_RS04090	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS04095	SSF52507	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
RAF_RS04100	SSF48024	N-terminal domain of DnaB helicase
RAF_RS04100	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS04120	SSF55120	Pseudouridine synthase
RAF_RS04120	SSF55174	Alpha-L RNA-binding motif
RAF_RS04125	SSF141571	Pentapeptide repeat-like
RAF_RS04130	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_RS04135	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS04135	SSF54211	Ribosomal protein S5 domain 2-like
RAF_RS04145	SSF57863	ArfGap/RecO-like zinc finger
RAF_RS04155	SSF53067	Actin-like ATPase domain
RAF_RS04165	SSF50447	Translation proteins
RAF_RS04165	SSF52156	Initiation factor IF2/eIF5b, domain 3
RAF_RS04165	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS04170	SSF47794	Rad51 N-terminal domain-like
RAF_RS04170	SSF50249	Nucleic acid-binding proteins
RAF_RS04170	SSF54814	Prokaryotic type KH domain (KH-domain type II)
RAF_RS04170	SSF69705	Transcription factor NusA, N-terminal domain
RAF_RS04175	SSF74942	YhbC-like, C-terminal domain
RAF_RS04175	SSF75420	YhbC-like, N-terminal domain
RAF_RS04190	SSF46785	"Winged helix" DNA-binding domain
RAF_RS04195	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_RS04195	SSF55174	Alpha-L RNA-binding motif
RAF_RS04200	SSF52374	Nucleotidylyl transferase
RAF_RS04200	SSF55174	Alpha-L RNA-binding motif
RAF_RS04260	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
RAF_RS04265	SSF48239	Terpenoid cyclases/Protein prenyltransferases
RAF_RS04280	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
RAF_RS04285	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_RS04290	SSF53271	PRTase-like
RAF_RS04295	SSF53271	PRTase-like
RAF_RS04315	SSF51905	FAD/NAD(P)-binding domain
RAF_RS04325	SSF46689	Homeodomain-like
RAF_RS04325	SSF52172	CheY-like
RAF_RS04325	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS04330	SSF141571	Pentapeptide repeat-like
RAF_RS04340	SSF56519	Penicillin binding protein dimerisation domain
RAF_RS04340	SSF56601	beta-lactamase/transpeptidase-like
RAF_RS04355	SSF56519	Penicillin binding protein dimerisation domain
RAF_RS04355	SSF56601	beta-lactamase/transpeptidase-like
RAF_RS04365	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_RS04365	SSF81799	Putative methyltransferase TM0872, insert domain
RAF_RS04370	SSF89447	AbrB/MazE/MraZ-like
RAF_RS04375	SSF48403	Ankyrin repeat
RAF_RS04390	SSF46600	C-terminal UvrC-binding domain of UvrB
RAF_RS04390	SSF47781	RuvA domain 2-like
RAF_RS04390	SSF82771	GIY-YIG endonuclease
RAF_RS04395	SSF110087	DR1885-like metal-binding protein
RAF_RS04415	SSF46767	Methylated DNA-protein cysteine methyltransferase, C-terminal domain
RAF_RS04415	SSF53155	Methylated DNA-protein cysteine methyltransferase domain
RAF_RS04470	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS04470	SSF81767	Pre-protein crosslinking domain of SecA
RAF_RS04470	SSF81886	Helical scaffold and wing domains of SecA
RAF_RS04475	SSF54534	FKBP-like
RAF_RS04480	SSF56214	4'-phosphopantetheinyl transferase
RAF_RS04485	SSF63562	RPB6/omega subunit-like
RAF_RS04490	SSF55205	EPT/RTPC-like
RAF_RS04495	SSF54211	Ribosomal protein S5 domain 2-like
RAF_RS04495	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RAF_RS04495	SSF56719	Type II DNA topoisomerase
RAF_RS04500	SSF56784	HAD-like
RAF_RS04510	SSF158791	MgtE N-terminal domain-like
RAF_RS04510	SSF161093	MgtE membrane domain-like
RAF_RS04510	SSF54631	CBS-domain pair
RAF_RS04560	SSF82866	Multidrug efflux transporter AcrB transmembrane domain
RAF_RS04565	SSF52833	Thioredoxin-like
RAF_RS04570	SSF82093	Heme chaperone CcmE
RAF_RS04575	SSF50324	Inorganic pyrophosphatase
RAF_RS04595	SSF50249	Nucleic acid-binding proteins
RAF_RS04595	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS04610	SSF100950	NagB/RpiA/CoA transferase-like
RAF_RS04615	SSF100950	NagB/RpiA/CoA transferase-like
RAF_RS04620	SSF52218	Flavoproteins
RAF_RS04625	SSF52218	Flavoproteins
RAF_RS04640	SSF53244	MurD-like peptide ligases, peptide-binding domain
RAF_RS04640	SSF53623	MurD-like peptide ligases, catalytic domain
RAF_RS04640	SSF63418	MurE/MurF N-terminal domain
RAF_RS04645	SSF53244	MurD-like peptide ligases, peptide-binding domain
RAF_RS04645	SSF53623	MurD-like peptide ligases, catalytic domain
RAF_RS04645	SSF63418	MurE/MurF N-terminal domain
RAF_RS04650	SSF141259	CarD-like
RAF_RS04650	SSF143517	TRCF domain-like
RAF_RS04650	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS04655	SSF109910	YgfY-like
RAF_RS04660	SSF52821	Rhodanese/Cell cycle control phosphatase
RAF_RS04665	SSF48295	TrpR-like
RAF_RS04665	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS04690	SSF52151	FabD/lysophospholipase-like
RAF_RS04700	SSF103473	MFS general substrate transporter
RAF_RS04710	SSF81593	Nucleotidyltransferase substrate binding subunit/domain
RAF_RS04715	SSF81301	Nucleotidyltransferase
RAF_RS04720	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS04720	SSF81271	TGS-like
RAF_RS04725	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RAF_RS04735	SSF53178	Peptidyl-tRNA hydrolase-like
RAF_RS04740	SSF50715	Ribosomal protein L25-like
RAF_RS04745	SSF102114	Radical SAM enzymes
RAF_RS04750	SSF143034	L35p-like
RAF_RS04755	SSF74731	Ribosomal protein L20
RAF_RS04765	SSF54211	Ribosomal protein S5 domain 2-like
RAF_RS04770	SSF48403	Ankyrin repeat
RAF_RS04790	SSF143865	CorA soluble domain-like
RAF_RS04790	SSF144083	Magnesium transport protein CorA, transmembrane region
RAF_RS04805	SSF56112	Protein kinase-like (PK-like)
RAF_RS04815	SSF158472	HAMP domain-like
RAF_RS04815	SSF47384	Homodimeric domain of signal transducing histidine kinase
RAF_RS04815	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RAF_RS04840	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
RAF_RS04840	SSF50677	ValRS/IleRS/LeuRS editing domain
RAF_RS04840	SSF52374	Nucleotidylyl transferase
RAF_RS04860	SSF48452	TPR-like
RAF_RS04865	SSF51230	Single hybrid motif
RAF_RS04865	SSF51246	Rudiment single hybrid motif
RAF_RS04865	SSF52440	PreATP-grasp domain
RAF_RS04865	SSF56059	Glutathione synthetase ATP-binding domain-like
RAF_RS04870	SSF52096	ClpP/crotonase
RAF_RS04880	SSF103473	MFS general substrate transporter
RAF_RS04880	SSF56801	Acetyl-CoA synthetase-like
RAF_RS04880	SSF69593	Glycerol-3-phosphate (1)-acyltransferase
RAF_RS04885	SSF159894	YgaC/TfoX-N like
RAF_RS04890	SSF81345	ABC transporter involved in vitamin B12 uptake, BtuC
RAF_RS04895	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_RS04900	SSF48163	An anticodon-binding domain of class I aminoacyl-tRNA synthetases
RAF_RS04900	SSF52374	Nucleotidylyl transferase
RAF_RS04910	SSF48592	GroEL equatorial domain-like
RAF_RS04910	SSF52029	GroEL apical domain-like
RAF_RS04910	SSF54849	GroEL-intermediate domain like
RAF_RS04915	SSF50129	GroES-like
RAF_RS04945	SSF54211	Ribosomal protein S5 domain 2-like
RAF_RS04945	SSF55666	Ribonuclease PH domain 2-like
RAF_RS04950	SSF51064	Head domain of nucleotide exchange factor GrpE
RAF_RS04950	SSF58014	Coiled-coil domain of nucleotide exchange factor GrpE
RAF_RS04960	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS04965	SSF103473	MFS general substrate transporter
RAF_RS05005	SSF46992	Ribosomal protein S20
RAF_RS05010	SSF64263	Prokaryotic ribosomal protein L17
RAF_RS05015	SSF47789	C-terminal domain of RNA polymerase alpha subunit
RAF_RS05015	SSF55257	RBP11-like subunits of RNA polymerase
RAF_RS05015	SSF56553	Insert subdomain of RNA polymerase alpha subunit
RAF_RS05020	SSF53137	Translational machinery components
RAF_RS05025	SSF46946	S13-like H2TH domain
RAF_RS05030	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS05035	SSF103491	Preprotein translocase SecY subunit
RAF_RS05040	SSF52080	Ribosomal proteins L15p and L18e
RAF_RS05045	SSF55129	Ribosomal protein L30p/L7e
RAF_RS05050	SSF54211	Ribosomal protein S5 domain 2-like
RAF_RS05050	SSF54768	dsRNA-binding domain-like
RAF_RS05055	SSF53137	Translational machinery components
RAF_RS05060	SSF56053	Ribosomal protein L6
RAF_RS05065	SSF56047	Ribosomal protein S8
RAF_RS05070	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
RAF_RS05075	SSF55282	RL5-like
RAF_RS05080	SSF50104	Translation proteins SH3-like domain
RAF_RS05085	SSF50193	Ribosomal protein L14
RAF_RS05090	SSF50249	Nucleic acid-binding proteins
RAF_RS05095	SSF46561	Ribosomal protein L29 (L29p)
RAF_RS05100	SSF54686	Ribosomal protein L16p/L10e
RAF_RS05105	SSF54814	Prokaryotic type KH domain (KH-domain type II)
RAF_RS05105	SSF54821	Ribosomal protein S3 C-terminal domain
RAF_RS05110	SSF54843	Ribosomal protein L22
RAF_RS05115	SSF54570	Ribosomal protein S19
RAF_RS05120	SSF50104	Translation proteins SH3-like domain
RAF_RS05120	SSF50249	Nucleic acid-binding proteins
RAF_RS05125	SSF54189	Ribosomal proteins S24e, L23 and L15e
RAF_RS05130	SSF52166	Ribosomal protein L4
RAF_RS05135	SSF50447	Translation proteins
RAF_RS05140	SSF54999	Ribosomal protein S10
RAF_RS05145	SSF50447	Translation proteins
RAF_RS05145	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
RAF_RS05145	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS05160	SSF55315	L30e-like
RAF_RS05160	SSF75217	alpha/beta knot
RAF_RS05170	SSF48557	L-aspartase-like
RAF_RS05175	SSF143120	YefM-like
RAF_RS05180	SSF88723	PIN domain-like
RAF_RS05185	SSF52490	Tubulin nucleotide-binding domain-like
RAF_RS05185	SSF55307	Tubulin C-terminal domain-like
RAF_RS05195	SSF49772	Ecotin, trypsin inhibitor
RAF_RS05200	SSF110836	Hypothetical protein SAV1430
RAF_RS05200	SSF117916	Fe-S cluster assembly (FSCA) domain-like
RAF_RS05205	SSF103473	MFS general substrate transporter
RAF_RS05210	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS05215	SSF50249	Nucleic acid-binding proteins
RAF_RS05225	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_RS05230	SSF109998	Triger factor/SurA peptide-binding domain-like
RAF_RS05250	SSF53850	Periplasmic binding protein-like II
RAF_RS05260	SSF56219	DNase I-like
RAF_RS05270	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS05275	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS05300	SSF56112	Protein kinase-like (PK-like)
RAF_RS05305	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_RS05310	SSF46946	S13-like H2TH domain
RAF_RS05310	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
RAF_RS05310	SSF81624	N-terminal domain of MutM-like DNA repair proteins
RAF_RS05340	SSF51556	Metallo-dependent hydrolases
RAF_RS05345	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
RAF_RS05345	SSF52374	Nucleotidylyl transferase
RAF_RS05350	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS05355	SSF103473	MFS general substrate transporter
RAF_RS05370	SSF47323	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
RAF_RS05370	SSF50677	ValRS/IleRS/LeuRS editing domain
RAF_RS05370	SSF52374	Nucleotidylyl transferase
RAF_RS05400	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RAF_RS05405	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase
RAF_RS05450	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS05450	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
RAF_RS05455	SSF55729	Acyl-CoA N-acyltransferases (Nat)
RAF_RS05460	SSF52402	Adenine nucleotide alpha hydrolases-like
RAF_RS05465	SSF143100	TTHA1013/TTHA0281-like
RAF_RS05465	SSF47598	Ribbon-helix-helix
RAF_RS05475	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS05475	SSF90123	ABC transporter transmembrane region
RAF_RS05485	SSF103473	MFS general substrate transporter
RAF_RS05495	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS05500	SSF54001	Cysteine proteinases
RAF_RS05505	SSF54631	CBS-domain pair
RAF_RS05505	SSF56176	FAD-binding/transporter-associated domain-like
RAF_RS05520	SSF48452	TPR-like
RAF_RS05530	SSF103515	Autotransporter
RAF_RS05535	SSF81301	Nucleotidyltransferase
RAF_RS05540	SSF51445	(Trans)glycosidases
RAF_RS05545	SSF46955	Putative DNA-binding domain
RAF_RS05550	SSF47729	IHF-like DNA-binding proteins
RAF_RS05555	SSF47162	Apolipoprotein
RAF_RS05560	SSF52833	Thioredoxin-like
RAF_RS05570	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS05575	SSF51261	Duplicated hybrid motif
RAF_RS05590	SSF47781	RuvA domain 2-like
RAF_RS05590	SSF50249	Nucleic acid-binding proteins
RAF_RS05590	SSF52113	BRCT domain
RAF_RS05590	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain
RAF_RS05595	SSF51713	tRNA-guanine transglycosylase
RAF_RS05600	SSF109604	HD-domain/PDEase-like
RAF_RS05640	SSF53098	Ribonuclease H-like
RAF_RS05645	SSF101738	SspB-like
RAF_RS05655	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS05660	SSF53098	Ribonuclease H-like
RAF_RS05670	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS05680	SSF52151	FabD/lysophospholipase-like
RAF_RS05680	SSF55048	Probable ACP-binding domain of malonyl-CoA ACP transacylase
RAF_RS05745	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS05790	SSF55811	Nudix
RAF_RS05805	SSF54631	CBS-domain pair
RAF_RS05805	SSF56176	FAD-binding/transporter-associated domain-like
RAF_RS05810	SSF55486	Metalloproteases ("zincins"), catalytic domain
RAF_RS05815	SSF50118	Cell growth inhibitor/plasmid maintenance toxic component
RAF_RS05825	SSF102114	Radical SAM enzymes
RAF_RS05830	SSF53383	PLP-dependent transferases
RAF_RS05835	SSF53474	alpha/beta-Hydrolases
RAF_RS05840	SSF52833	Thioredoxin-like
RAF_RS05845	SSF48150	DNA-glycosylase
RAF_RS05890	SSF53790	Tetrapyrrole methylase
RAF_RS05895	SSF53822	Periplasmic binding protein-like I
RAF_RS05905	SSF101307	YutG-like
RAF_RS05910	SSF141091	L21p-like
RAF_RS05915	SSF110324	Ribosomal L27 protein-like
RAF_RS05920	SSF53633	Carbamate kinase-like
RAF_RS05920	SSF55021	ACT-like
RAF_RS05925	SSF47413	lambda repressor-like DNA-binding domains
RAF_RS05935	SSF56281	Metallo-hydrolase/oxidoreductase
RAF_RS05955	SSF103473	MFS general substrate transporter
RAF_RS05960	SSF102829	Cell division protein ZapA-like
RAF_RS05975	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_RS05975	SSF53223	Aminoacid dehydrogenase-like, N-terminal domain
RAF_RS05980	SSF116878	TrmE connector domain
RAF_RS05980	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS05990	SSF103473	MFS general substrate transporter
RAF_RS06005	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS06005	SSF54752	RecA protein, C-terminal domain
RAF_RS06010	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_RS06015	SSF47336	ACP-like
RAF_RS06020	SSF53901	Thiolase-like
RAF_RS06025	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS06045	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS06050	SSF47413	lambda repressor-like DNA-binding domains
RAF_RS06060	SSF53067	Actin-like ATPase domain
RAF_RS06075	SSF103088	OmpA-like
RAF_RS06085	SSF53901	Thiolase-like
RAF_RS06090	SSF57829	Zn-binding ribosomal proteins
RAF_RS06100	SSF47364	Domain of the SRP/SRP receptor G-proteins
RAF_RS06100	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS06105	SSF47807	5' to 3' exonuclease, C-terminal subdomain
RAF_RS06105	SSF56672	DNA/RNA polymerases
RAF_RS06105	SSF88723	PIN domain-like
RAF_RS06110	SSF55973	S-adenosylmethionine synthetase
RAF_RS06115	SSF55973	S-adenosylmethionine synthetase
RAF_RS06135	SSF89550	PHP domain-like
RAF_RS06140	SSF48179	6-phosphogluconate dehydrogenase C-terminal domain-like
RAF_RS06140	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_RS06140	SSF52413	UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
RAF_RS06150	SSF103473	MFS general substrate transporter
RAF_RS06160	SSF46589	tRNA-binding arm
RAF_RS06160	SSF55681	Class II aaRS and biotin synthetases
RAF_RS06165	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS06180	SSF56925	OMPA-like
RAF_RS06185	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_RS06195	SSF47413	lambda repressor-like DNA-binding domains
RAF_RS06220	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS06225	SSF54862	4Fe-4S ferredoxins
RAF_RS06235	SSF53706	Formate dehydrogenase/DMSO reductase, domains 1-3
RAF_RS06235	SSF54292	2Fe-2S ferredoxin-like
RAF_RS06235	SSF54862	4Fe-4S ferredoxins
RAF_RS06245	SSF52016	LeuD/IlvD-like
RAF_RS06245	SSF53732	Aconitase iron-sulfur domain
RAF_RS06250	SSF51344	Epsilon subunit of F1F0-ATP synthase N-terminal domain
RAF_RS06255	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
RAF_RS06255	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
RAF_RS06255	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS06260	SSF52943	ATP synthase (F1-ATPase), gamma subunit
RAF_RS06265	SSF47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase
RAF_RS06265	SSF50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase
RAF_RS06265	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS06270	SSF47928	N-terminal domain of the delta subunit of the F1F0-ATP synthase
RAF_RS06275	SSF51905	FAD/NAD(P)-binding domain
RAF_RS06275	SSF55424	FAD/NAD-linked reductases, dimerisation (C-terminal) domain
RAF_RS06280	SSF47240	Ferritin-like
RAF_RS06300	SSF56601	beta-lactamase/transpeptidase-like
RAF_RS06305	SSF56601	beta-lactamase/transpeptidase-like
RAF_RS06310	SSF53955	Lysozyme-like
RAF_RS06310	SSF56601	beta-lactamase/transpeptidase-like
RAF_RS06315	SSF102114	Radical SAM enzymes
RAF_RS06340	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_RS06345	SSF81301	Nucleotidyltransferase
RAF_RS06350	SSF82657	BolA-like
RAF_RS06355	SSF103515	Autotransporter
RAF_RS06430	SSF50249	Nucleic acid-binding proteins
RAF_RS06435	SSF52972	ITPase-like
RAF_RS06440	SSF109635	DnaK suppressor protein DksA, alpha-hairpin domain
RAF_RS06440	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)
RAF_RS06445	SSF56349	DNA breaking-rejoining enzymes
RAF_RS06455	SSF56024	Phospholipase D/nuclease
RAF_RS06470	SSF143968	UbiD C-terminal domain-like
RAF_RS06470	SSF50475	FMN-binding split barrel
RAF_RS06480	SSF103515	Autotransporter
RAF_RS06490	SSF46785	"Winged helix" DNA-binding domain
RAF_RS06490	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS06500	SSF55920	Creatinase/aminopeptidase
RAF_RS06525	SSF56925	OMPA-like
RAF_RS06530	SSF56925	OMPA-like
RAF_RS06535	SSF54862	4Fe-4S ferredoxins
RAF_RS06545	SSF53927	Cytidine deaminase-like
RAF_RS06550	SSF160240	Cation efflux protein cytoplasmic domain-like
RAF_RS06550	SSF161111	Cation efflux protein transmembrane domain-like
RAF_RS06560	SSF49777	PEBP-like
RAF_RS06565	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS06595	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS06600	SSF50249	Nucleic acid-binding proteins
RAF_RS06605	SSF53474	alpha/beta-Hydrolases
RAF_RS06615	SSF53955	Lysozyme-like
RAF_RS06630	SSF69786	YggU-like
RAF_RS06635	SSF110942	HSP90 C-terminal domain
RAF_RS06635	SSF54211	Ribosomal protein S5 domain 2-like
RAF_RS06635	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RAF_RS06640	SSF53383	PLP-dependent transferases
RAF_RS06650	SSF102735	Trigger factor ribosome-binding domain
RAF_RS06650	SSF109998	Triger factor/SurA peptide-binding domain-like
RAF_RS06650	SSF54534	FKBP-like
RAF_RS06655	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS06655	SSF82051	Obg GTP-binding protein N-terminal domain
RAF_RS06660	SSF48256	Citrate synthase
RAF_RS06670	SSF52141	Uracil-DNA glycosylase-like
RAF_RS06675	SSF55120	Pseudouridine synthase
RAF_RS06675	SSF55174	Alpha-L RNA-binding motif
RAF_RS06700	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_RS06705	SSF55821	YrdC/RibB
RAF_RS06710	SSF109604	HD-domain/PDEase-like
RAF_RS06715	SSF55681	Class II aaRS and biotin synthetases
RAF_RS06720	SSF88723	PIN domain-like
RAF_RS06725	SSF143120	YefM-like
RAF_RS06755	SSF101353	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
RAF_RS06755	SSF50447	Translation proteins
RAF_RS06755	SSF55186	ThrRS/AlaRS common domain
RAF_RS06755	SSF55681	Class II aaRS and biotin synthetases
RAF_RS06760	SSF55120	Pseudouridine synthase
RAF_RS06765	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors
RAF_RS06765	SSF88946	Sigma2 domain of RNA polymerase sigma factors
RAF_RS06770	SSF56731	DNA primase core
RAF_RS06770	SSF57783	Zinc beta-ribbon
RAF_RS06780	SSF46557	GreA transcript cleavage protein, N-terminal domain
RAF_RS06780	SSF54534	FKBP-like
RAF_RS06790	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_RS06790	SSF52283	Formate/glycerate dehydrogenase catalytic domain-like
RAF_RS06795	SSF89392	Prokaryotic lipoproteins and lipoprotein localization factors
RAF_RS06800	SSF48019	post-AAA+ oligomerization domain-like
RAF_RS06800	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS06805	SSF82607	YbaB-like
RAF_RS06810	SSF50630	Acid proteases
RAF_RS06825	SSF143120	YefM-like
RAF_RS06830	SSF52540	P-loop containing nucleoside triphosphate hydrolases
RAF_RS06835	SSF56281	Metallo-hydrolase/oxidoreductase
RAF_RS06840	SSF48317	Acid phosphatase/Vanadium-dependent haloperoxidase
RAF_RS06855	SSF102400	DNA polymerase III chi subunit
RAF_RS06865	SSF53187	Zn-dependent exopeptidases
RAF_RS06865	SSF55031	Bacterial exopeptidase dimerisation domain
RAF_RS06875	SSF116734	DNA methylase specificity domain
RAF_RS06880	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_RS06885	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases
RAF_RS06915	SSF55681	Class II aaRS and biotin synthetases
RAF_RS06920	SSF47090	PGBD-like
RAF_RS06920	SSF55846	N-acetylmuramoyl-L-alanine amidase-like
RAF_RS06930	SSF54565	Ribosomal protein S16
RAF_RS06935	SSF57829	Zn-binding ribosomal proteins
RAF_RS06940	SSF118116	DNA mismatch repair protein MutL
RAF_RS06940	SSF54211	Ribosomal protein S5 domain 2-like
RAF_RS06940	SSF55874	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RAF_RS06945	SSF51735	NAD(P)-binding Rossmann-fold domains
RAF_RS06955	SSF103473	MFS general substrate transporter
RAF_RS06960	SSF102886	Coproporphyrinogen III oxidase
RAF_RS06980	SSF53800	Chelatase
RAF_RS06985	SSF51726	UROD/MetE-like
RAF_RS07100	SSF53448	Nucleotide-diphospho-sugar transferases