RAF_RS00320 6f075bdfbbda7b43ca7aa4731f850ee6 397 PANTHER PTHR11351 37 291 2.5E-65 T 21-04-2016 RAF_RS00320 6f075bdfbbda7b43ca7aa4731f850ee6 397 PRINTS PR00075 Fatty acid desaturase family 1 signature 235 249 6.1E-15 T 21-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 RAF_RS00320 6f075bdfbbda7b43ca7aa4731f850ee6 397 PRINTS PR00075 Fatty acid desaturase family 1 signature 193 214 6.1E-15 T 21-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 RAF_RS00320 6f075bdfbbda7b43ca7aa4731f850ee6 397 PRINTS PR00075 Fatty acid desaturase family 1 signature 57 77 6.1E-15 T 21-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 RAF_RS00320 6f075bdfbbda7b43ca7aa4731f850ee6 397 PRINTS PR00075 Fatty acid desaturase family 1 signature 94 123 6.1E-15 T 21-04-2016 IPR015876 Fatty acid desaturase, type 1, core GO:0016717|GO:0055114 RAF_RS00320 6f075bdfbbda7b43ca7aa4731f850ee6 397 Pfam PF00487 Fatty acid desaturase 50 259 9.4E-17 T 21-04-2016 IPR005804 Fatty acid desaturase domain GO:0006629 RAF_RS03420 76fc622ee00246a3828c8378444ea8a3 240 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 18 240 1.0E-70 T 21-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase RAF_RS03420 76fc622ee00246a3828c8378444ea8a3 240 PANTHER PTHR30616 37 221 2.3E-44 T 21-04-2016 RAF_RS03420 76fc622ee00246a3828c8378444ea8a3 240 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 33 222 6.6E-45 T 21-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase RAF_RS03420 76fc622ee00246a3828c8378444ea8a3 240 SUPERFAMILY SSF64438 7 239 2.2E-58 T 21-04-2016 IPR011324 Cytotoxic necrotizing factor-like, catalytic RAF_RS03420 76fc622ee00246a3828c8378444ea8a3 240 Gene3D G3DSA:3.60.140.10 34 239 5.1E-59 T 21-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase RAF_RS03885 7ae470a60d755c3c348228fa3072f360 351 Gene3D G3DSA:3.30.160.40 307 348 2.1E-10 T 21-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RAF_RS03885 7ae470a60d755c3c348228fa3072f360 351 Gene3D G3DSA:3.30.160.40 228 255 2.1E-10 T 21-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RAF_RS03885 7ae470a60d755c3c348228fa3072f360 351 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 231 247 - T 21-04-2016 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RAF_RS03885 7ae470a60d755c3c348228fa3072f360 351 SUPERFAMILY SSF54782 220 256 9.15E-9 T 21-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RAF_RS03885 7ae470a60d755c3c348228fa3072f360 351 PANTHER PTHR11557 308 348 1.7E-117 T 21-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RAF_RS03885 7ae470a60d755c3c348228fa3072f360 351 PANTHER PTHR11557 5 258 1.7E-117 T 21-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RAF_RS03885 7ae470a60d755c3c348228fa3072f360 351 PIRSF PIRSF001438 1 351 3.2E-114 T 21-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RAF_RS03885 7ae470a60d755c3c348228fa3072f360 351 Gene3D G3DSA:3.40.190.10 2 109 1.6E-44 T 21-04-2016 RAF_RS03885 7ae470a60d755c3c348228fa3072f360 351 Gene3D G3DSA:3.40.190.10 110 199 6.5E-31 T 21-04-2016 RAF_RS03885 7ae470a60d755c3c348228fa3072f360 351 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 228 256 1.4E-7 T 21-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RAF_RS03885 7ae470a60d755c3c348228fa3072f360 351 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 5 255 9.0E-107 T 21-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RAF_RS03885 7ae470a60d755c3c348228fa3072f360 351 PRINTS PR00151 Porphobilinogen deaminase signature 75 94 3.33E-34 T 21-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RAF_RS03885 7ae470a60d755c3c348228fa3072f360 351 PRINTS PR00151 Porphobilinogen deaminase signature 123 140 3.33E-34 T 21-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RAF_RS03885 7ae470a60d755c3c348228fa3072f360 351 PRINTS PR00151 Porphobilinogen deaminase signature 230 247 3.33E-34 T 21-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RAF_RS03885 7ae470a60d755c3c348228fa3072f360 351 PRINTS PR00151 Porphobilinogen deaminase signature 142 159 3.33E-34 T 21-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RAF_RS03885 7ae470a60d755c3c348228fa3072f360 351 PRINTS PR00151 Porphobilinogen deaminase signature 44 64 3.33E-34 T 21-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RAF_RS03885 7ae470a60d755c3c348228fa3072f360 351 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 5 212 2.6E-71 T 21-04-2016 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RAF_RS03885 7ae470a60d755c3c348228fa3072f360 351 SUPERFAMILY SSF53850 4 218 1.29E-75 T 21-04-2016 RAF_RS03885 7ae470a60d755c3c348228fa3072f360 351 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 258 306 1.0E-26 T 21-04-2016 IPR005728 Rickettsial palindromic element RAF_RS03885 7ae470a60d755c3c348228fa3072f360 351 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 4 348 33.976 T 21-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RAF_RS00760 d4c79a9a56acd1244878d35a0f31d619 1153 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 293 479 5.7E-23 T 21-04-2016 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 RAF_RS02800 92a4ef715c67b1e0111d0da76fb9286a 214 PANTHER PTHR10681:SF107 5 169 2.4E-14 T 21-04-2016 RAF_RS02800 92a4ef715c67b1e0111d0da76fb9286a 214 Pfam PF08534 Redoxin 44 172 1.2E-17 T 21-04-2016 IPR013740 Redoxin GO:0016491 RAF_RS02800 92a4ef715c67b1e0111d0da76fb9286a 214 Gene3D G3DSA:3.40.30.10 8 188 4.0E-34 T 21-04-2016 IPR012336 Thioredoxin-like fold RAF_RS02800 92a4ef715c67b1e0111d0da76fb9286a 214 SUPERFAMILY SSF52833 13 175 3.25E-29 T 21-04-2016 IPR012336 Thioredoxin-like fold RAF_RS02800 92a4ef715c67b1e0111d0da76fb9286a 214 PANTHER PTHR10681 5 169 2.4E-14 T 21-04-2016 RAF_RS02815 b598093d41049a6d134c0e46f1b260ea 653 Pfam PF01464 Transglycosylase SLT domain 492 594 2.0E-21 T 21-04-2016 IPR008258 Transglycosylase SLT domain 1 RAF_RS02815 b598093d41049a6d134c0e46f1b260ea 653 Gene3D G3DSA:1.25.20.10 28 228 2.5E-11 T 21-04-2016 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 RAF_RS02815 b598093d41049a6d134c0e46f1b260ea 653 Gene3D G3DSA:1.25.20.10 349 388 3.1E-7 T 21-04-2016 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 RAF_RS02815 b598093d41049a6d134c0e46f1b260ea 653 PANTHER PTHR21666 492 634 4.4E-30 T 21-04-2016 RAF_RS02815 b598093d41049a6d134c0e46f1b260ea 653 SUPERFAMILY SSF53955 492 638 5.5E-38 T 21-04-2016 IPR023346 Lysozyme-like domain RAF_RS02815 b598093d41049a6d134c0e46f1b260ea 653 SUPERFAMILY SSF48435 27 474 5.1E-43 T 21-04-2016 IPR016026 Lytic transglycosylase, superhelical U-shaped and linker domain GO:0004553|GO:0042597 RAF_RS02815 b598093d41049a6d134c0e46f1b260ea 653 Gene3D G3DSA:1.10.530.10 492 638 6.1E-38 T 21-04-2016 RAF_RS01000 cb4859c677750964bbfdfdf9e47da071 483 Pfam PF02934 GatB/GatE catalytic domain 14 295 1.6E-113 T 21-04-2016 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 RAF_RS01000 cb4859c677750964bbfdfdf9e47da071 483 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 10 482 38.362 T 21-04-2016 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 RAF_RS01000 cb4859c677750964bbfdfdf9e47da071 483 SUPERFAMILY SSF89095 304 409 2.09E-33 T 21-04-2016 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 RAF_RS01000 cb4859c677750964bbfdfdf9e47da071 483 PANTHER PTHR11659:SF0 10 483 2.1E-261 T 21-04-2016 RAF_RS01000 cb4859c677750964bbfdfdf9e47da071 483 PANTHER PTHR11659 10 483 2.1E-261 T 21-04-2016 IPR017959 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E GO:0016884 RAF_RS01000 cb4859c677750964bbfdfdf9e47da071 483 Pfam PF02637 GatB domain 335 481 1.3E-56 T 21-04-2016 IPR018027 Asn/Gln amidotransferase GO:0016884 RAF_RS01000 cb4859c677750964bbfdfdf9e47da071 483 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 11 482 7.4E-180 T 21-04-2016 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 RAF_RS01000 cb4859c677750964bbfdfdf9e47da071 483 SMART SM00845 335 481 3.9E-82 T 21-04-2016 IPR018027 Asn/Gln amidotransferase GO:0016884 RAF_RS01000 cb4859c677750964bbfdfdf9e47da071 483 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 152 166 - T 21-04-2016 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 RAF_RS01000 cb4859c677750964bbfdfdf9e47da071 483 Gene3D G3DSA:1.10.10.410 427 482 8.9E-6 T 21-04-2016 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal RAF_RS01000 cb4859c677750964bbfdfdf9e47da071 483 SUPERFAMILY SSF55931 12 303 7.19E-117 T 21-04-2016 RAF_RS00915 9677bb4d80e301d6627a8c5b55c6f174 192 Gene3D G3DSA:2.30.30.30 132 190 5.5E-26 T 21-04-2016 IPR014722 Ribosomal protein L2 domain 2 RAF_RS00915 9677bb4d80e301d6627a8c5b55c6f174 192 Gene3D G3DSA:3.30.70.940 18 126 2.3E-36 T 21-04-2016 IPR006645 NusG, N-terminal GO:0006355 RAF_RS00915 9677bb4d80e301d6627a8c5b55c6f174 192 SUPERFAMILY SSF50104 137 190 8.53E-18 T 21-04-2016 IPR008991 Translation protein SH3-like domain RAF_RS00915 9677bb4d80e301d6627a8c5b55c6f174 192 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 17 191 21.998 T 21-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 RAF_RS00915 9677bb4d80e301d6627a8c5b55c6f174 192 PRINTS PR00338 Transcription termination factor NUSG signature 72 84 1.9E-18 T 21-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 RAF_RS00915 9677bb4d80e301d6627a8c5b55c6f174 192 PRINTS PR00338 Transcription termination factor NUSG signature 167 183 1.9E-18 T 21-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 RAF_RS00915 9677bb4d80e301d6627a8c5b55c6f174 192 PRINTS PR00338 Transcription termination factor NUSG signature 149 164 1.9E-18 T 21-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 RAF_RS00915 9677bb4d80e301d6627a8c5b55c6f174 192 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 20 190 8.7E-67 T 21-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 RAF_RS00915 9677bb4d80e301d6627a8c5b55c6f174 192 ProSitePatterns PS01014 Transcription termination factor nusG signature. 174 183 - T 21-04-2016 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site RAF_RS00915 9677bb4d80e301d6627a8c5b55c6f174 192 SUPERFAMILY SSF82679 18 125 1.44E-32 T 21-04-2016 IPR006645 NusG, N-terminal GO:0006355 RAF_RS00915 9677bb4d80e301d6627a8c5b55c6f174 192 Pfam PF00467 KOW motif 140 168 4.6E-7 T 21-04-2016 IPR005824 KOW RAF_RS00915 9677bb4d80e301d6627a8c5b55c6f174 192 SMART SM00738 17 125 1.4E-43 T 21-04-2016 IPR006645 NusG, N-terminal GO:0006355 RAF_RS00915 9677bb4d80e301d6627a8c5b55c6f174 192 PANTHER PTHR30265 6 190 4.7E-57 T 21-04-2016 RAF_RS00915 9677bb4d80e301d6627a8c5b55c6f174 192 SMART SM00739 137 164 4.5E-4 T 21-04-2016 IPR005824 KOW RAF_RS00915 9677bb4d80e301d6627a8c5b55c6f174 192 Pfam PF02357 Transcription termination factor nusG 18 121 3.6E-24 T 21-04-2016 IPR006645 NusG, N-terminal GO:0006355 RAF_RS01670 c29e3075261296d742bae8996279b75a 161 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 7 161 34.487 T 21-04-2016 IPR022927 RNA pyrophosphohydrolase RppH RAF_RS01670 c29e3075261296d742bae8996279b75a 161 PANTHER PTHR11839 13 161 3.9E-35 T 21-04-2016 RAF_RS01670 c29e3075261296d742bae8996279b75a 161 Pfam PF00293 NUDIX domain 13 150 2.3E-23 T 21-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RAF_RS01670 c29e3075261296d742bae8996279b75a 161 ProSitePatterns PS00893 Nudix box signature. 46 67 - T 21-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RAF_RS01670 c29e3075261296d742bae8996279b75a 161 Gene3D G3DSA:3.90.79.10 11 156 3.0E-30 T 21-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RAF_RS01670 c29e3075261296d742bae8996279b75a 161 PANTHER PTHR11839:SF8 13 161 3.9E-35 T 21-04-2016 RAF_RS01670 c29e3075261296d742bae8996279b75a 161 SUPERFAMILY SSF55811 9 157 6.91E-29 T 21-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RAF_RS04635 c0ef9e32a4bc276d034af685000f56b0 361 PANTHER PTHR22926 2 361 2.2E-156 T 21-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RAF_RS04635 c0ef9e32a4bc276d034af685000f56b0 361 PANTHER PTHR22926:SF5 2 361 2.2E-156 T 21-04-2016 RAF_RS04635 c0ef9e32a4bc276d034af685000f56b0 361 ProSitePatterns PS01348 MraY family signature 2. 189 200 - T 21-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RAF_RS04635 c0ef9e32a4bc276d034af685000f56b0 361 Pfam PF00953 Glycosyl transferase family 4 100 284 6.1E-36 T 21-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RAF_RS04635 c0ef9e32a4bc276d034af685000f56b0 361 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 38 361 3.6E-126 T 21-04-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RAF_RS04635 c0ef9e32a4bc276d034af685000f56b0 361 ProSitePatterns PS01347 MraY family signature 1. 69 81 - T 21-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RAF_RS04635 c0ef9e32a4bc276d034af685000f56b0 361 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 359 25.458 T 21-04-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RAF_RS06955 b6ffad9e76ca738f0a24c035592d41c7 424 Pfam PF07690 Major Facilitator Superfamily 15 369 2.4E-24 T 21-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAF_RS06955 b6ffad9e76ca738f0a24c035592d41c7 424 PANTHER PTHR23508:SF1 2 421 8.8E-105 T 21-04-2016 RAF_RS06955 b6ffad9e76ca738f0a24c035592d41c7 424 Gene3D G3DSA:1.20.1250.20 12 213 1.4E-17 T 21-04-2016 RAF_RS06955 b6ffad9e76ca738f0a24c035592d41c7 424 Gene3D G3DSA:1.20.1250.20 228 411 7.2E-15 T 21-04-2016 RAF_RS06955 b6ffad9e76ca738f0a24c035592d41c7 424 PANTHER PTHR23508 2 421 8.8E-105 T 21-04-2016 RAF_RS06955 b6ffad9e76ca738f0a24c035592d41c7 424 SUPERFAMILY SSF103473 5 411 7.59E-54 T 21-04-2016 IPR020846 Major facilitator superfamily domain RAF_RS05900 d5d61cd5c38949a0214eeaaba1bd3d69 53 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 2 47 1.0E-20 T 21-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 RAF_RS05900 d5d61cd5c38949a0214eeaaba1bd3d69 53 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 2 53 18.325 T 21-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 RAF_RS05900 d5d61cd5c38949a0214eeaaba1bd3d69 53 Pfam PF02416 mttA/Hcf106 family 3 53 8.7E-14 T 21-04-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 RAF_RS02490 6e62a2b18701330e4342b2d20c5efaa8 123 PANTHER PTHR11058:SF10 1 123 6.1E-56 T 21-04-2016 RAF_RS02490 6e62a2b18701330e4342b2d20c5efaa8 123 PANTHER PTHR11058 1 123 6.1E-56 T 21-04-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 RAF_RS02490 6e62a2b18701330e4342b2d20c5efaa8 123 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 7 123 18.641 T 21-04-2016 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 RAF_RS02490 6e62a2b18701330e4342b2d20c5efaa8 123 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 27 123 6.2E-38 T 21-04-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 RAF_RS00125 ea8d975ec19d8d1e07bfc8a2cde35b84 208 Gene3D G3DSA:3.40.50.300 4 142 8.6E-10 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00125 ea8d975ec19d8d1e07bfc8a2cde35b84 208 SUPERFAMILY SSF52540 3 178 2.84E-17 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00125 ea8d975ec19d8d1e07bfc8a2cde35b84 208 Pfam PF00931 NB-ARC domain 5 175 2.1E-8 T 21-04-2016 IPR002182 NB-ARC GO:0043531 RAF_RS00855 4949710e69a7fae93e04d6104679c013 286 TIGRFAM TIGR01932 hflC: HflC protein 139 283 9.7E-41 T 21-04-2016 IPR010200 HflC GO:0016021|GO:0052547 RAF_RS00855 4949710e69a7fae93e04d6104679c013 286 PIRSF PIRSF005651 1 286 1.1E-88 T 21-04-2016 IPR010200 HflC GO:0016021|GO:0052547 RAF_RS00855 4949710e69a7fae93e04d6104679c013 286 PANTHER PTHR10264 7 283 1.6E-82 T 21-04-2016 IPR001972 Stomatin family GO:0016020 RAF_RS00855 4949710e69a7fae93e04d6104679c013 286 SMART SM00244 21 183 8.4E-49 T 21-04-2016 IPR001107 Band 7 domain RAF_RS00855 4949710e69a7fae93e04d6104679c013 286 SUPERFAMILY SSF117892 53 190 1.7E-26 T 21-04-2016 IPR001107 Band 7 domain RAF_RS00855 4949710e69a7fae93e04d6104679c013 286 PANTHER PTHR10264:SF80 7 283 1.6E-82 T 21-04-2016 RAF_RS00855 4949710e69a7fae93e04d6104679c013 286 Pfam PF01145 SPFH domain / Band 7 family 25 199 8.8E-29 T 21-04-2016 IPR001107 Band 7 domain RAF_RS00355 c53f019ee1316945c507eb0e8a2cd158 637 Gene3D G3DSA:1.10.8.60 333 399 2.8E-24 T 21-04-2016 RAF_RS00355 c53f019ee1316945c507eb0e8a2cd158 637 Pfam PF01434 Peptidase family M41 385 592 3.5E-74 T 21-04-2016 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 RAF_RS00355 c53f019ee1316945c507eb0e8a2cd158 637 SUPERFAMILY SSF140990 406 598 1.28E-68 T 21-04-2016 RAF_RS00355 c53f019ee1316945c507eb0e8a2cd158 637 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 192 322 5.4E-45 T 21-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RAF_RS00355 c53f019ee1316945c507eb0e8a2cd158 637 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 104 593 1.1E-236 T 21-04-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 RAF_RS00355 c53f019ee1316945c507eb0e8a2cd158 637 Pfam PF06480 FtsH Extracellular 8 93 1.7E-10 T 21-04-2016 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 RAF_RS00355 c53f019ee1316945c507eb0e8a2cd158 637 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 6 605 36.009 T 21-04-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 RAF_RS00355 c53f019ee1316945c507eb0e8a2cd158 637 SUPERFAMILY SSF52540 146 394 1.4E-70 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00355 c53f019ee1316945c507eb0e8a2cd158 637 PANTHER PTHR23076 6 603 0.0 T 21-04-2016 RAF_RS00355 c53f019ee1316945c507eb0e8a2cd158 637 ProSitePatterns PS00674 AAA-protein family signature. 294 312 - T 21-04-2016 IPR003960 ATPase, AAA-type, conserved site GO:0005524 RAF_RS00355 c53f019ee1316945c507eb0e8a2cd158 637 SMART SM00382 187 326 3.1E-23 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS00355 c53f019ee1316945c507eb0e8a2cd158 637 Gene3D G3DSA:3.40.50.300 148 332 8.9E-64 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01070 b770dd0c929970fae9b9da4b1ebf793a 227 SUPERFAMILY SSF53335 11 226 6.88E-38 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS01070 b770dd0c929970fae9b9da4b1ebf793a 227 Gene3D G3DSA:3.40.50.150 13 227 4.0E-66 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS01070 b770dd0c929970fae9b9da4b1ebf793a 227 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 26 226 29.271 T 21-04-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 RAF_RS01070 b770dd0c929970fae9b9da4b1ebf793a 227 PANTHER PTHR10920:SF20 15 227 3.0E-117 T 21-04-2016 RAF_RS01070 b770dd0c929970fae9b9da4b1ebf793a 227 PANTHER PTHR10920 15 227 3.0E-117 T 21-04-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 RAF_RS01070 b770dd0c929970fae9b9da4b1ebf793a 227 Pfam PF01728 FtsJ-like methyltransferase 46 226 1.2E-56 T 21-04-2016 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 RAF_RS01070 b770dd0c929970fae9b9da4b1ebf793a 227 PIRSF PIRSF005461 11 227 2.0E-78 T 21-04-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 RAF_RS00165 d44d69afdee6ba863309cd0b03031790 277 SUPERFAMILY SSF52833 87 261 4.42E-34 T 21-04-2016 IPR012336 Thioredoxin-like fold RAF_RS00165 d44d69afdee6ba863309cd0b03031790 277 PANTHER PTHR13887 31 270 2.5E-22 T 21-04-2016 RAF_RS00165 d44d69afdee6ba863309cd0b03031790 277 PANTHER PTHR13887:SF14 31 270 2.5E-22 T 21-04-2016 RAF_RS00165 d44d69afdee6ba863309cd0b03031790 277 Gene3D G3DSA:3.40.30.10 94 266 1.5E-30 T 21-04-2016 IPR012336 Thioredoxin-like fold RAF_RS00165 d44d69afdee6ba863309cd0b03031790 277 ProSitePatterns PS00194 Thioredoxin family active site. 110 128 - T 21-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 RAF_RS00165 d44d69afdee6ba863309cd0b03031790 277 Pfam PF13462 Thioredoxin 97 262 3.0E-41 T 21-04-2016 IPR012336 Thioredoxin-like fold RAF_RS06960 5d770bc6f4e7a01166faa43e46f1eb32 279 Pfam PF01218 Coproporphyrinogen III oxidase 11 278 6.3E-97 T 21-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RAF_RS06960 5d770bc6f4e7a01166faa43e46f1eb32 279 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 168 192 - T 21-04-2016 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RAF_RS06960 5d770bc6f4e7a01166faa43e46f1eb32 279 Gene3D G3DSA:3.40.1500.10 5 278 5.3E-111 T 21-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RAF_RS06960 5d770bc6f4e7a01166faa43e46f1eb32 279 PIRSF PIRSF000166 2 279 3.7E-113 T 21-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RAF_RS06960 5d770bc6f4e7a01166faa43e46f1eb32 279 SUPERFAMILY SSF102886 5 278 2.49E-110 T 21-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RAF_RS06960 5d770bc6f4e7a01166faa43e46f1eb32 279 PANTHER PTHR10755 12 278 2.4E-124 T 21-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RAF_RS06960 5d770bc6f4e7a01166faa43e46f1eb32 279 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 3 279 52.422 T 21-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RAF_RS06960 5d770bc6f4e7a01166faa43e46f1eb32 279 PRINTS PR00073 Coprogen oxidase signature 40 56 1.4E-45 T 21-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RAF_RS06960 5d770bc6f4e7a01166faa43e46f1eb32 279 PRINTS PR00073 Coprogen oxidase signature 127 149 1.4E-45 T 21-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RAF_RS06960 5d770bc6f4e7a01166faa43e46f1eb32 279 PRINTS PR00073 Coprogen oxidase signature 164 193 1.4E-45 T 21-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RAF_RS06960 5d770bc6f4e7a01166faa43e46f1eb32 279 PRINTS PR00073 Coprogen oxidase signature 236 263 1.4E-45 T 21-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RAF_RS06960 5d770bc6f4e7a01166faa43e46f1eb32 279 PRINTS PR00073 Coprogen oxidase signature 264 279 1.4E-45 T 21-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RAF_RS06220 e4a36dceb241db224f38097241102581 191 Gene3D G3DSA:3.40.50.300 10 188 7.2E-33 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06220 e4a36dceb241db224f38097241102581 191 PANTHER PTHR24220 14 178 1.2E-39 T 21-04-2016 RAF_RS06220 e4a36dceb241db224f38097241102581 191 Pfam PF00005 ABC transporter 14 145 4.3E-25 T 21-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAF_RS06220 e4a36dceb241db224f38097241102581 191 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 14 190 1.5E-42 T 21-04-2016 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004|GO:0030288 RAF_RS06220 e4a36dceb241db224f38097241102581 191 PANTHER PTHR24220:SF508 14 178 1.2E-39 T 21-04-2016 RAF_RS06220 e4a36dceb241db224f38097241102581 191 SUPERFAMILY SSF52540 7 182 6.44E-35 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06220 e4a36dceb241db224f38097241102581 191 SMART SM00382 21 188 2.6E-4 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS04000 810cb02d8de08eaa55f0b2a616eeb7da 248 SUPERFAMILY SSF53448 8 245 2.82E-50 T 21-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RAF_RS04000 810cb02d8de08eaa55f0b2a616eeb7da 248 PANTHER PTHR22572:SF115 9 243 9.0E-57 T 21-04-2016 RAF_RS04000 810cb02d8de08eaa55f0b2a616eeb7da 248 Pfam PF12804 MobA-like NTP transferase domain 11 141 1.4E-20 T 21-04-2016 IPR025877 MobA-like NTP transferase RAF_RS04000 810cb02d8de08eaa55f0b2a616eeb7da 248 Gene3D G3DSA:3.90.550.10 5 246 1.7E-58 T 21-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RAF_RS04000 810cb02d8de08eaa55f0b2a616eeb7da 248 PANTHER PTHR22572 9 243 9.0E-57 T 21-04-2016 RAF_RS02720 8c43629263b5e410f9a0445ed2fada2d 322 PANTHER PTHR13504:SF32 33 249 3.1E-36 T 21-04-2016 RAF_RS02720 8c43629263b5e410f9a0445ed2fada2d 322 SUPERFAMILY SSF140931 79 255 2.88E-38 T 21-04-2016 IPR003812 Fido domain RAF_RS02720 8c43629263b5e410f9a0445ed2fada2d 322 Pfam PF02661 Fic/DOC family 99 197 6.2E-20 T 21-04-2016 IPR003812 Fido domain RAF_RS02720 8c43629263b5e410f9a0445ed2fada2d 322 Gene3D G3DSA:1.10.3290.10 34 256 9.2E-53 T 21-04-2016 IPR003812 Fido domain RAF_RS02720 8c43629263b5e410f9a0445ed2fada2d 322 PANTHER PTHR13504 33 249 3.1E-36 T 21-04-2016 RAF_RS05990 350f7705f1f000a8f0047d92f79f9143 113 SUPERFAMILY SSF103473 3 98 2.09E-9 T 21-04-2016 IPR020846 Major facilitator superfamily domain RAF_RS05990 350f7705f1f000a8f0047d92f79f9143 113 PANTHER PTHR23501 1 99 3.2E-14 T 21-04-2016 RAF_RS05990 350f7705f1f000a8f0047d92f79f9143 113 Gene3D G3DSA:1.20.1250.20 13 95 3.7E-7 T 21-04-2016 RAF_RS05990 350f7705f1f000a8f0047d92f79f9143 113 PANTHER PTHR23501:SF65 1 99 3.2E-14 T 21-04-2016 RAF_RS00925 f592560d0de5ca204f364b49bf5fc3f3 239 Gene3D G3DSA:3.30.190.20 27 77 6.1E-41 T 21-04-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 RAF_RS00925 f592560d0de5ca204f364b49bf5fc3f3 239 Gene3D G3DSA:3.30.190.20 170 235 6.1E-41 T 21-04-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 RAF_RS00925 f592560d0de5ca204f364b49bf5fc3f3 239 PIRSF PIRSF002155 2 236 1.8E-81 T 21-04-2016 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 RAF_RS00925 f592560d0de5ca204f364b49bf5fc3f3 239 ProSitePatterns PS01199 Ribosomal protein L1 signature. 129 148 - T 21-04-2016 IPR023673 Ribosomal protein L1, conserved site RAF_RS00925 f592560d0de5ca204f364b49bf5fc3f3 239 Pfam PF00687 Ribosomal protein L1p/L10e family 39 228 5.8E-48 T 21-04-2016 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein RAF_RS00925 f592560d0de5ca204f364b49bf5fc3f3 239 PANTHER PTHR23105:SF5 28 238 1.5E-76 T 21-04-2016 RAF_RS00925 f592560d0de5ca204f364b49bf5fc3f3 239 PANTHER PTHR23105 28 238 1.5E-76 T 21-04-2016 RAF_RS00925 f592560d0de5ca204f364b49bf5fc3f3 239 Gene3D G3DSA:3.40.50.790 78 168 4.6E-39 T 21-04-2016 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich RAF_RS00925 f592560d0de5ca204f364b49bf5fc3f3 239 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 4 238 40.584 T 21-04-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 RAF_RS00925 f592560d0de5ca204f364b49bf5fc3f3 239 SUPERFAMILY SSF56808 15 235 1.31E-76 T 21-04-2016 IPR023674 Ribosomal protein L1-like RAF_RS00925 f592560d0de5ca204f364b49bf5fc3f3 239 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 14 237 1.0E-100 T 21-04-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 RAF_RS06055 e25f4f99a396b82ea4cdefb87841ec17 279 PANTHER PTHR34138:SF1 15 278 1.7E-44 T 21-04-2016 RAF_RS06055 e25f4f99a396b82ea4cdefb87841ec17 279 PANTHER PTHR34138 15 278 1.7E-44 T 21-04-2016 RAF_RS06055 e25f4f99a396b82ea4cdefb87841ec17 279 Pfam PF04085 rod shape-determining protein MreC 140 275 2.3E-32 T 21-04-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 RAF_RS06055 e25f4f99a396b82ea4cdefb87841ec17 279 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 47 258 3.4E-31 T 21-04-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 RAF_RS06055 e25f4f99a396b82ea4cdefb87841ec17 279 PIRSF PIRSF038471 18 278 1.7E-46 T 21-04-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 RAF_RS01190 cf224a486ea776d0a138dc7b1e759e6b 138 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 4 137 2.2E-33 T 21-04-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein RAF_RS01190 cf224a486ea776d0a138dc7b1e759e6b 138 SUPERFAMILY SSF55620 1 137 7.23E-37 T 21-04-2016 RAF_RS01190 cf224a486ea776d0a138dc7b1e759e6b 138 PANTHER PTHR12589 5 137 2.7E-26 T 21-04-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein RAF_RS01190 cf224a486ea776d0a138dc7b1e759e6b 138 Gene3D G3DSA:3.30.479.10 1 138 2.6E-34 T 21-04-2016 RAF_RS01105 169aba016f6d0405323f0de3d43e9e35 1008 SUPERFAMILY SSF82714 700 784 1.7E-15 T 21-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RAF_RS01105 169aba016f6d0405323f0de3d43e9e35 1008 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 9.2E-74 T 21-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RAF_RS01105 169aba016f6d0405323f0de3d43e9e35 1008 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 9.2E-74 T 21-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RAF_RS01105 169aba016f6d0405323f0de3d43e9e35 1008 PRINTS PR00702 Acriflavin resistance protein family signature 604 618 9.2E-74 T 21-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RAF_RS01105 169aba016f6d0405323f0de3d43e9e35 1008 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 9.2E-74 T 21-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RAF_RS01105 169aba016f6d0405323f0de3d43e9e35 1008 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 9.2E-74 T 21-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RAF_RS01105 169aba016f6d0405323f0de3d43e9e35 1008 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 9.2E-74 T 21-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RAF_RS01105 169aba016f6d0405323f0de3d43e9e35 1008 PRINTS PR00702 Acriflavin resistance protein family signature 541 558 9.2E-74 T 21-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RAF_RS01105 169aba016f6d0405323f0de3d43e9e35 1008 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 9.2E-74 T 21-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RAF_RS01105 169aba016f6d0405323f0de3d43e9e35 1008 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 9.2E-74 T 21-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RAF_RS01105 169aba016f6d0405323f0de3d43e9e35 1008 Pfam PF00873 AcrB/AcrD/AcrF family 4 1005 2.7E-275 T 21-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RAF_RS01105 169aba016f6d0405323f0de3d43e9e35 1008 SUPERFAMILY SSF82866 290 487 2.49E-45 T 21-04-2016 RAF_RS01105 169aba016f6d0405323f0de3d43e9e35 1008 Gene3D G3DSA:3.30.70.1430 557 646 6.2E-14 T 21-04-2016 RAF_RS01105 169aba016f6d0405323f0de3d43e9e35 1008 PANTHER PTHR32063 1 1005 0.0 T 21-04-2016 RAF_RS01105 169aba016f6d0405323f0de3d43e9e35 1008 SUPERFAMILY SSF82693 40 134 5.23E-23 T 21-04-2016 RAF_RS01105 169aba016f6d0405323f0de3d43e9e35 1008 Gene3D G3DSA:3.30.70.1430 40 140 5.1E-27 T 21-04-2016 RAF_RS01105 169aba016f6d0405323f0de3d43e9e35 1008 SUPERFAMILY SSF82866 788 1007 1.57E-46 T 21-04-2016 RAF_RS01105 169aba016f6d0405323f0de3d43e9e35 1008 SUPERFAMILY SSF82693 554 647 1.83E-17 T 21-04-2016 RAF_RS01105 169aba016f6d0405323f0de3d43e9e35 1008 Gene3D G3DSA:3.30.2090.10 182 265 5.7E-18 T 21-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RAF_RS01105 169aba016f6d0405323f0de3d43e9e35 1008 Gene3D G3DSA:3.30.2090.10 699 784 1.2E-14 T 21-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RAF_RS01105 169aba016f6d0405323f0de3d43e9e35 1008 Gene3D G3DSA:1.10.3850.10 792 1007 1.2E-62 T 21-04-2016 RAF_RS01105 169aba016f6d0405323f0de3d43e9e35 1008 Gene3D G3DSA:1.10.3850.10 271 490 2.6E-54 T 21-04-2016 RAF_RS01105 169aba016f6d0405323f0de3d43e9e35 1008 SUPERFAMILY SSF82693 136 181 1.22E-18 T 21-04-2016 RAF_RS01105 169aba016f6d0405323f0de3d43e9e35 1008 SUPERFAMILY SSF82693 267 321 1.22E-18 T 21-04-2016 RAF_RS01105 169aba016f6d0405323f0de3d43e9e35 1008 SUPERFAMILY SSF82714 182 263 1.01E-14 T 21-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RAF_RS05010 b7a1911a0f5df292cb4f622058cab37e 136 Pfam PF01196 Ribosomal protein L17 20 116 1.4E-31 T 21-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05010 b7a1911a0f5df292cb4f622058cab37e 136 PANTHER PTHR14413:SF5 1 123 1.7E-54 T 21-04-2016 RAF_RS05010 b7a1911a0f5df292cb4f622058cab37e 136 Gene3D G3DSA:3.90.1030.10 1 117 4.3E-45 T 21-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05010 b7a1911a0f5df292cb4f622058cab37e 136 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 21-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05010 b7a1911a0f5df292cb4f622058cab37e 136 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 23.963 T 21-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05010 b7a1911a0f5df292cb4f622058cab37e 136 SUPERFAMILY SSF64263 1 119 4.06E-46 T 21-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05010 b7a1911a0f5df292cb4f622058cab37e 136 TIGRFAM TIGR00059 L17: ribosomal protein bL17 8 117 1.7E-39 T 21-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05010 b7a1911a0f5df292cb4f622058cab37e 136 PANTHER PTHR14413 1 123 1.7E-54 T 21-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS04580 8b8a3aa61699145fc8d4da823c1ca26a 555 PANTHER PTHR11206:SF90 117 129 5.9E-60 T 21-04-2016 RAF_RS04580 8b8a3aa61699145fc8d4da823c1ca26a 555 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 51 547 1.6E-123 T 21-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RAF_RS04580 8b8a3aa61699145fc8d4da823c1ca26a 555 PRINTS PR01806 Virulence factor MviN signature 100 116 1.3E-70 T 21-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RAF_RS04580 8b8a3aa61699145fc8d4da823c1ca26a 555 PRINTS PR01806 Virulence factor MviN signature 204 225 1.3E-70 T 21-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RAF_RS04580 8b8a3aa61699145fc8d4da823c1ca26a 555 PRINTS PR01806 Virulence factor MviN signature 81 100 1.3E-70 T 21-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RAF_RS04580 8b8a3aa61699145fc8d4da823c1ca26a 555 PRINTS PR01806 Virulence factor MviN signature 454 471 1.3E-70 T 21-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RAF_RS04580 8b8a3aa61699145fc8d4da823c1ca26a 555 PRINTS PR01806 Virulence factor MviN signature 304 330 1.3E-70 T 21-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RAF_RS04580 8b8a3aa61699145fc8d4da823c1ca26a 555 PRINTS PR01806 Virulence factor MviN signature 402 421 1.3E-70 T 21-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RAF_RS04580 8b8a3aa61699145fc8d4da823c1ca26a 555 PRINTS PR01806 Virulence factor MviN signature 180 204 1.3E-70 T 21-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RAF_RS04580 8b8a3aa61699145fc8d4da823c1ca26a 555 Pfam PF03023 MviN-like protein 76 524 1.9E-148 T 21-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RAF_RS04580 8b8a3aa61699145fc8d4da823c1ca26a 555 PANTHER PTHR11206 117 129 5.9E-60 T 21-04-2016 RAF_RS04580 8b8a3aa61699145fc8d4da823c1ca26a 555 PANTHER PTHR11206 165 170 5.9E-60 T 21-04-2016 RAF_RS04580 8b8a3aa61699145fc8d4da823c1ca26a 555 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 4 48 5.8E-21 T 21-04-2016 IPR005728 Rickettsial palindromic element RAF_RS04580 8b8a3aa61699145fc8d4da823c1ca26a 555 PANTHER PTHR11206:SF90 265 471 5.9E-60 T 21-04-2016 RAF_RS04580 8b8a3aa61699145fc8d4da823c1ca26a 555 PANTHER PTHR11206 265 471 5.9E-60 T 21-04-2016 RAF_RS04580 8b8a3aa61699145fc8d4da823c1ca26a 555 PANTHER PTHR11206:SF90 165 170 5.9E-60 T 21-04-2016 RAF_RS04580 8b8a3aa61699145fc8d4da823c1ca26a 555 PIRSF PIRSF002869 46 555 5.9E-175 T 21-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ RAF_RS04595 f8a39cb1283a9e6a3594da1bef16c4fb 713 Gene3D G3DSA:3.40.50.300 470 658 2.6E-43 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04595 f8a39cb1283a9e6a3594da1bef16c4fb 713 Pfam PF00271 Helicase conserved C-terminal domain 483 608 2.6E-20 T 21-04-2016 IPR001650 Helicase, C-terminal RAF_RS04595 f8a39cb1283a9e6a3594da1bef16c4fb 713 PANTHER PTHR24031 319 622 3.5E-104 T 21-04-2016 RAF_RS04595 f8a39cb1283a9e6a3594da1bef16c4fb 713 PANTHER PTHR24031 647 663 3.5E-104 T 21-04-2016 RAF_RS04595 f8a39cb1283a9e6a3594da1bef16c4fb 713 PANTHER PTHR24031 278 302 3.5E-104 T 21-04-2016 RAF_RS04595 f8a39cb1283a9e6a3594da1bef16c4fb 713 SUPERFAMILY SSF52540 337 623 9.9E-54 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04595 f8a39cb1283a9e6a3594da1bef16c4fb 713 Gene3D G3DSA:2.40.50.140 55 138 2.2E-10 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS04595 f8a39cb1283a9e6a3594da1bef16c4fb 713 SMART SM00487 285 475 2.0E-30 T 21-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RAF_RS04595 f8a39cb1283a9e6a3594da1bef16c4fb 713 Pfam PF17191 RecG wedge domain 21 169 7.0E-11 T 21-04-2016 IPR033454 RecG, wedge domain RAF_RS04595 f8a39cb1283a9e6a3594da1bef16c4fb 713 SMART SM00490 530 609 2.8E-20 T 21-04-2016 IPR001650 Helicase, C-terminal RAF_RS04595 f8a39cb1283a9e6a3594da1bef16c4fb 713 PANTHER PTHR24031:SF249 319 622 3.5E-104 T 21-04-2016 RAF_RS04595 f8a39cb1283a9e6a3594da1bef16c4fb 713 PANTHER PTHR24031:SF249 647 663 3.5E-104 T 21-04-2016 RAF_RS04595 f8a39cb1283a9e6a3594da1bef16c4fb 713 PANTHER PTHR24031:SF249 278 302 3.5E-104 T 21-04-2016 RAF_RS04595 f8a39cb1283a9e6a3594da1bef16c4fb 713 Gene3D G3DSA:3.40.50.300 277 469 7.3E-54 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04595 f8a39cb1283a9e6a3594da1bef16c4fb 713 SUPERFAMILY SSF50249 22 172 4.97E-21 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS04595 f8a39cb1283a9e6a3594da1bef16c4fb 713 Pfam PF00270 DEAD/DEAH box helicase 290 447 2.8E-22 T 21-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RAF_RS06755 4d53a3b65328c1e6b0a97f5f71d5c9f7 878 SUPERFAMILY SSF101353 248 463 2.22E-62 T 21-04-2016 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RAF_RS06755 4d53a3b65328c1e6b0a97f5f71d5c9f7 878 SUPERFAMILY SSF55681 4 247 6.46E-105 T 21-04-2016 RAF_RS06755 4d53a3b65328c1e6b0a97f5f71d5c9f7 878 PANTHER PTHR11777 1 872 0.0 T 21-04-2016 RAF_RS06755 4d53a3b65328c1e6b0a97f5f71d5c9f7 878 SUPERFAMILY SSF50447 455 553 7.42E-14 T 21-04-2016 IPR009000 Translation protein, beta-barrel domain RAF_RS06755 4d53a3b65328c1e6b0a97f5f71d5c9f7 878 Gene3D G3DSA:3.30.930.10 4 243 2.2E-110 T 21-04-2016 RAF_RS06755 4d53a3b65328c1e6b0a97f5f71d5c9f7 878 Gene3D G3DSA:3.30.980.10 565 624 2.1E-6 T 21-04-2016 RAF_RS06755 4d53a3b65328c1e6b0a97f5f71d5c9f7 878 Gene3D G3DSA:3.30.980.10 675 689 2.1E-6 T 21-04-2016 RAF_RS06755 4d53a3b65328c1e6b0a97f5f71d5c9f7 878 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 878 176.145 T 21-04-2016 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 RAF_RS06755 4d53a3b65328c1e6b0a97f5f71d5c9f7 878 SUPERFAMILY SSF55186 555 713 3.53E-51 T 21-04-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 RAF_RS06755 4d53a3b65328c1e6b0a97f5f71d5c9f7 878 SMART SM00863 656 699 2.2E-23 T 21-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 RAF_RS06755 4d53a3b65328c1e6b0a97f5f71d5c9f7 878 Pfam PF02272 DHHA1 domain 804 870 1.9E-8 T 21-04-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7 RAF_RS06755 4d53a3b65328c1e6b0a97f5f71d5c9f7 878 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 656 699 3.6E-20 T 21-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 RAF_RS06755 4d53a3b65328c1e6b0a97f5f71d5c9f7 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 77 88 1.1E-31 T 21-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RAF_RS06755 4d53a3b65328c1e6b0a97f5f71d5c9f7 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 276 292 1.1E-31 T 21-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RAF_RS06755 4d53a3b65328c1e6b0a97f5f71d5c9f7 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 300 313 1.1E-31 T 21-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RAF_RS06755 4d53a3b65328c1e6b0a97f5f71d5c9f7 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 201 212 1.1E-31 T 21-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RAF_RS06755 4d53a3b65328c1e6b0a97f5f71d5c9f7 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 228 241 1.1E-31 T 21-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RAF_RS06755 4d53a3b65328c1e6b0a97f5f71d5c9f7 878 Pfam PF01411 tRNA synthetases class II (A) 8 557 4.9E-223 T 21-04-2016 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 RAF_RS06755 4d53a3b65328c1e6b0a97f5f71d5c9f7 878 PANTHER PTHR11777:SF9 1 872 0.0 T 21-04-2016 RAF_RS06755 4d53a3b65328c1e6b0a97f5f71d5c9f7 878 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 8 858 5.0E-286 T 21-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 RAF_RS06010 5f7dfe945b55e774c672e5fbb1ff5144 241 PANTHER PTHR24322:SF328 11 132 3.4E-50 T 21-04-2016 RAF_RS06010 5f7dfe945b55e774c672e5fbb1ff5144 241 PANTHER PTHR24322:SF328 148 180 3.4E-50 T 21-04-2016 RAF_RS06010 5f7dfe945b55e774c672e5fbb1ff5144 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 1.7E-13 T 21-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RAF_RS06010 5f7dfe945b55e774c672e5fbb1ff5144 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 1.7E-13 T 21-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RAF_RS06010 5f7dfe945b55e774c672e5fbb1ff5144 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 1.7E-13 T 21-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RAF_RS06010 5f7dfe945b55e774c672e5fbb1ff5144 241 SUPERFAMILY SSF51735 6 240 2.73E-84 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS06010 5f7dfe945b55e774c672e5fbb1ff5144 241 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 135 163 - T 21-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAF_RS06010 5f7dfe945b55e774c672e5fbb1ff5144 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 138 2.3E-47 T 21-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RAF_RS06010 5f7dfe945b55e774c672e5fbb1ff5144 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.3E-47 T 21-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RAF_RS06010 5f7dfe945b55e774c672e5fbb1ff5144 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 202 222 2.3E-47 T 21-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RAF_RS06010 5f7dfe945b55e774c672e5fbb1ff5144 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 2.3E-47 T 21-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RAF_RS06010 5f7dfe945b55e774c672e5fbb1ff5144 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 2.3E-47 T 21-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RAF_RS06010 5f7dfe945b55e774c672e5fbb1ff5144 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 2.3E-47 T 21-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RAF_RS06010 5f7dfe945b55e774c672e5fbb1ff5144 241 PANTHER PTHR24322 11 132 3.4E-50 T 21-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RAF_RS06010 5f7dfe945b55e774c672e5fbb1ff5144 241 PANTHER PTHR24322 148 180 3.4E-50 T 21-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RAF_RS06010 5f7dfe945b55e774c672e5fbb1ff5144 241 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 10 238 5.9E-99 T 21-04-2016 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 RAF_RS06010 5f7dfe945b55e774c672e5fbb1ff5144 241 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 184 0.0012 T 21-04-2016 RAF_RS06010 5f7dfe945b55e774c672e5fbb1ff5144 241 Gene3D G3DSA:3.40.50.720 2 240 3.6E-86 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS06010 5f7dfe945b55e774c672e5fbb1ff5144 241 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 238 3.1E-62 T 21-04-2016 RAF_RS00580 d0caba37e92c938adc675bd6d8b9cf00 1933 Gene3D G3DSA:2.40.128.130 1655 1931 5.0E-16 T 21-04-2016 IPR005546 Autotransporter beta-domain RAF_RS00580 d0caba37e92c938adc675bd6d8b9cf00 1933 Pfam PF03797 Autotransporter beta-domain 1658 1919 3.9E-36 T 21-04-2016 IPR005546 Autotransporter beta-domain RAF_RS00580 d0caba37e92c938adc675bd6d8b9cf00 1933 SMART SM00869 1658 1923 1.6E-19 T 21-04-2016 IPR005546 Autotransporter beta-domain RAF_RS00580 d0caba37e92c938adc675bd6d8b9cf00 1933 SUPERFAMILY SSF101447 1077 1087 1.28E-5 T 21-04-2016 RAF_RS00580 d0caba37e92c938adc675bd6d8b9cf00 1933 SUPERFAMILY SSF101447 1334 1409 1.28E-5 T 21-04-2016 RAF_RS00580 d0caba37e92c938adc675bd6d8b9cf00 1933 SUPERFAMILY SSF103515 1654 1931 5.89E-30 T 21-04-2016 IPR005546 Autotransporter beta-domain RAF_RS00960 f622deb1c3f7e6e0ad4a8df7a34128bb 266 PANTHER PTHR13696 9 232 7.6E-15 T 21-04-2016 RAF_RS00960 f622deb1c3f7e6e0ad4a8df7a34128bb 266 SUPERFAMILY SSF52540 6 232 2.1E-24 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00960 f622deb1c3f7e6e0ad4a8df7a34128bb 266 Gene3D G3DSA:3.40.50.300 9 249 4.2E-23 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00960 f622deb1c3f7e6e0ad4a8df7a34128bb 266 PANTHER PTHR13696:SF54 9 232 7.6E-15 T 21-04-2016 RAF_RS00960 f622deb1c3f7e6e0ad4a8df7a34128bb 266 Pfam PF09140 ATPase MipZ 9 260 2.2E-86 T 21-04-2016 IPR015223 ATPase MipZ RAF_RS04910 61ac1e46d11a2d845a2b0ea6d02a8c65 547 TIGRFAM TIGR02348 GroEL: chaperonin GroL 4 527 1.1E-244 T 21-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RAF_RS04910 61ac1e46d11a2d845a2b0ea6d02a8c65 547 SUPERFAMILY SSF48592 406 522 6.91E-76 T 21-04-2016 RAF_RS04910 61ac1e46d11a2d845a2b0ea6d02a8c65 547 SUPERFAMILY SSF48592 7 134 6.91E-76 T 21-04-2016 RAF_RS04910 61ac1e46d11a2d845a2b0ea6d02a8c65 547 Hamap MF_00600 60 kDa chaperonin [groL]. 2 545 41.196 T 21-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RAF_RS04910 61ac1e46d11a2d845a2b0ea6d02a8c65 547 Gene3D G3DSA:1.10.560.10 6 187 3.7E-44 T 21-04-2016 IPR027413 GroEL-like equatorial domain RAF_RS04910 61ac1e46d11a2d845a2b0ea6d02a8c65 547 Gene3D G3DSA:1.10.560.10 367 519 2.2E-41 T 21-04-2016 IPR027413 GroEL-like equatorial domain RAF_RS04910 61ac1e46d11a2d845a2b0ea6d02a8c65 547 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 525 2.7E-101 T 21-04-2016 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 RAF_RS04910 61ac1e46d11a2d845a2b0ea6d02a8c65 547 PANTHER PTHR11353 6 547 2.0E-245 T 21-04-2016 RAF_RS04910 61ac1e46d11a2d845a2b0ea6d02a8c65 547 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 21-04-2016 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 RAF_RS04910 61ac1e46d11a2d845a2b0ea6d02a8c65 547 Gene3D G3DSA:3.50.7.10 188 366 4.8E-98 T 21-04-2016 IPR027409 GroEL-like apical domain RAF_RS04910 61ac1e46d11a2d845a2b0ea6d02a8c65 547 SUPERFAMILY SSF52029 187 376 8.55E-82 T 21-04-2016 IPR027409 GroEL-like apical domain RAF_RS04910 61ac1e46d11a2d845a2b0ea6d02a8c65 547 SUPERFAMILY SSF54849 138 204 3.2E-22 T 21-04-2016 RAF_RS04910 61ac1e46d11a2d845a2b0ea6d02a8c65 547 PRINTS PR00298 60kDa chaperonin signature 398 419 5.3E-73 T 21-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RAF_RS04910 61ac1e46d11a2d845a2b0ea6d02a8c65 547 PRINTS PR00298 60kDa chaperonin signature 350 375 5.3E-73 T 21-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RAF_RS04910 61ac1e46d11a2d845a2b0ea6d02a8c65 547 PRINTS PR00298 60kDa chaperonin signature 83 110 5.3E-73 T 21-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RAF_RS04910 61ac1e46d11a2d845a2b0ea6d02a8c65 547 PRINTS PR00298 60kDa chaperonin signature 268 291 5.3E-73 T 21-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RAF_RS04910 61ac1e46d11a2d845a2b0ea6d02a8c65 547 PRINTS PR00298 60kDa chaperonin signature 27 53 5.3E-73 T 21-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 RAF_RS04195 4e797106f2983a6aeb7dea5ed59d90da 251 Pfam PF01728 FtsJ-like methyltransferase 61 244 2.0E-25 T 21-04-2016 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 RAF_RS04195 4e797106f2983a6aeb7dea5ed59d90da 251 SUPERFAMILY SSF55174 2 58 2.65E-6 T 21-04-2016 RAF_RS04195 4e797106f2983a6aeb7dea5ed59d90da 251 Gene3D G3DSA:3.10.290.10 5 90 7.1E-15 T 21-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RAF_RS04195 4e797106f2983a6aeb7dea5ed59d90da 251 Gene3D G3DSA:3.40.50.150 91 179 2.9E-5 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS04195 4e797106f2983a6aeb7dea5ed59d90da 251 TIGRFAM TIGR00478 tly: TlyA family rRNA methyltransferase/putative hemolysin 5 238 9.7E-60 T 21-04-2016 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 RAF_RS04195 4e797106f2983a6aeb7dea5ed59d90da 251 PANTHER PTHR32319 1 247 8.6E-98 T 21-04-2016 RAF_RS04195 4e797106f2983a6aeb7dea5ed59d90da 251 PANTHER PTHR32319:SF0 1 247 8.6E-98 T 21-04-2016 RAF_RS04195 4e797106f2983a6aeb7dea5ed59d90da 251 SMART SM00363 4 70 1.0E-5 T 21-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RAF_RS04195 4e797106f2983a6aeb7dea5ed59d90da 251 SUPERFAMILY SSF53335 60 244 1.58E-20 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS04195 4e797106f2983a6aeb7dea5ed59d90da 251 PIRSF PIRSF005578 1 248 7.6E-87 T 21-04-2016 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 RAF_RS03865 ed321c0649eac0f97dd74f7cea6db031 330 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 2 329 41.839 T 21-04-2016 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2 RAF_RS03865 ed321c0649eac0f97dd74f7cea6db031 330 PANTHER PTHR10055 2 330 1.7E-168 T 21-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RAF_RS03865 ed321c0649eac0f97dd74f7cea6db031 330 Gene3D G3DSA:1.10.240.10 206 323 2.7E-18 T 21-04-2016 RAF_RS03865 ed321c0649eac0f97dd74f7cea6db031 330 PANTHER PTHR10055:SF10 2 330 1.7E-168 T 21-04-2016 RAF_RS03865 ed321c0649eac0f97dd74f7cea6db031 330 SUPERFAMILY SSF52374 4 328 4.27E-94 T 21-04-2016 RAF_RS03865 ed321c0649eac0f97dd74f7cea6db031 330 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 1 328 7.6E-107 T 21-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RAF_RS03865 ed321c0649eac0f97dd74f7cea6db031 330 Pfam PF00579 tRNA synthetases class I (W and Y) 4 283 6.3E-80 T 21-04-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS03865 ed321c0649eac0f97dd74f7cea6db031 330 Gene3D G3DSA:3.40.50.620 3 205 4.9E-88 T 21-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS03865 ed321c0649eac0f97dd74f7cea6db031 330 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 141 162 1.4E-26 T 21-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RAF_RS03865 ed321c0649eac0f97dd74f7cea6db031 330 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 15 31 1.4E-26 T 21-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RAF_RS03865 ed321c0649eac0f97dd74f7cea6db031 330 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 195 205 1.4E-26 T 21-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RAF_RS03865 ed321c0649eac0f97dd74f7cea6db031 330 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 65 84 1.4E-26 T 21-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 RAF_RS03330 ef787c027696f42f4117590fa29ab065 328 Pfam PF00268 Ribonucleotide reductase, small chain 10 281 3.8E-72 T 21-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 RAF_RS03330 ef787c027696f42f4117590fa29ab065 328 PANTHER PTHR23409:SF18 12 325 7.5E-63 T 21-04-2016 RAF_RS03330 ef787c027696f42f4117590fa29ab065 328 PIRSF PIRSF000355 4 317 2.2E-103 T 21-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 RAF_RS03330 ef787c027696f42f4117590fa29ab065 328 SUPERFAMILY SSF47240 10 318 1.25E-87 T 21-04-2016 IPR009078 Ferritin-like superfamily RAF_RS03330 ef787c027696f42f4117590fa29ab065 328 Gene3D G3DSA:1.10.620.20 10 289 2.0E-99 T 21-04-2016 IPR012348 Ribonucleotide reductase-related GO:0016491|GO:0055114 Reactome: REACT_1698 RAF_RS03330 ef787c027696f42f4117590fa29ab065 328 PANTHER PTHR23409 12 325 7.5E-63 T 21-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 RAF_RS01755 269c72380349480edc46b124a1afad57 175 PRINTS PR00604 Class IA and IB cytochrome C signature 83 90 2.1E-15 T 21-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RAF_RS01755 269c72380349480edc46b124a1afad57 175 PRINTS PR00604 Class IA and IB cytochrome C signature 112 122 2.1E-15 T 21-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RAF_RS01755 269c72380349480edc46b124a1afad57 175 PRINTS PR00604 Class IA and IB cytochrome C signature 126 142 2.1E-15 T 21-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RAF_RS01755 269c72380349480edc46b124a1afad57 175 PRINTS PR00604 Class IA and IB cytochrome C signature 145 155 2.1E-15 T 21-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RAF_RS01755 269c72380349480edc46b124a1afad57 175 PRINTS PR00604 Class IA and IB cytochrome C signature 162 170 2.1E-15 T 21-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RAF_RS01755 269c72380349480edc46b124a1afad57 175 PRINTS PR00604 Class IA and IB cytochrome C signature 96 111 2.1E-15 T 21-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RAF_RS01755 269c72380349480edc46b124a1afad57 175 PANTHER PTHR11961 9 169 2.5E-54 T 21-04-2016 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 RAF_RS01755 269c72380349480edc46b124a1afad57 175 Gene3D G3DSA:1.10.760.10 71 171 3.3E-32 T 21-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RAF_RS01755 269c72380349480edc46b124a1afad57 175 Pfam PF00034 Cytochrome c 76 170 7.6E-6 T 21-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RAF_RS01755 269c72380349480edc46b124a1afad57 175 PANTHER PTHR11961:SF6 9 169 2.5E-54 T 21-04-2016 RAF_RS01755 269c72380349480edc46b124a1afad57 175 SUPERFAMILY SSF46626 72 170 1.06E-27 T 21-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RAF_RS06255 12889d385f945d6742d106d0aae38999 473 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 345 354 - T 21-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RAF_RS06255 12889d385f945d6742d106d0aae38999 473 Gene3D G3DSA:3.40.50.300 79 355 1.7E-105 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06255 12889d385f945d6742d106d0aae38999 473 SMART SM00382 145 331 3.6E-4 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS06255 12889d385f945d6742d106d0aae38999 473 Hamap MF_01347 ATP synthase subunit beta [atpB]. 3 472 56.359 T 21-04-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RAF_RS06255 12889d385f945d6742d106d0aae38999 473 PANTHER PTHR15184 4 472 0.0 T 21-04-2016 RAF_RS06255 12889d385f945d6742d106d0aae38999 473 PIRSF PIRSF039072 1 473 1.5E-273 T 21-04-2016 RAF_RS06255 12889d385f945d6742d106d0aae38999 473 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 5 472 1.0E-255 T 21-04-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RAF_RS06255 12889d385f945d6742d106d0aae38999 473 Gene3D G3DSA:2.40.10.170 2 78 3.0E-32 T 21-04-2016 RAF_RS06255 12889d385f945d6742d106d0aae38999 473 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 8 76 3.3E-21 T 21-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RAF_RS06255 12889d385f945d6742d106d0aae38999 473 PANTHER PTHR15184:SF44 4 472 0.0 T 21-04-2016 RAF_RS06255 12889d385f945d6742d106d0aae38999 473 SUPERFAMILY SSF50615 3 78 1.96E-24 T 21-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RAF_RS06255 12889d385f945d6742d106d0aae38999 473 Gene3D G3DSA:1.10.1140.10 357 472 3.6E-55 T 21-04-2016 IPR024034 ATPase, F1 complex beta subunit/V1 complex, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RAF_RS06255 12889d385f945d6742d106d0aae38999 473 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 133 354 1.8E-59 T 21-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RAF_RS06255 12889d385f945d6742d106d0aae38999 473 SUPERFAMILY SSF52540 80 360 1.03E-86 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06255 12889d385f945d6742d106d0aae38999 473 SUPERFAMILY SSF47917 357 472 1.73E-53 T 21-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RAF_RS02090 73e196764f4ceb8dd5107870b4182e34 886 Gene3D G3DSA:3.40.50.300 591 825 3.7E-83 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02090 73e196764f4ceb8dd5107870b4182e34 886 SUPERFAMILY SSF52540 591 824 1.94E-59 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02090 73e196764f4ceb8dd5107870b4182e34 886 Pfam PF05188 MutS domain II 142 272 2.2E-24 T 21-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 RAF_RS02090 73e196764f4ceb8dd5107870b4182e34 886 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 15 878 23.153 T 21-04-2016 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 RAF_RS02090 73e196764f4ceb8dd5107870b4182e34 886 SMART SM00534 634 821 7.0E-121 T 21-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 RAF_RS02090 73e196764f4ceb8dd5107870b4182e34 886 PANTHER PTHR11361 16 884 0.0 T 21-04-2016 RAF_RS02090 73e196764f4ceb8dd5107870b4182e34 886 Gene3D G3DSA:1.10.1420.10 282 491 2.1E-47 T 21-04-2016 RAF_RS02090 73e196764f4ceb8dd5107870b4182e34 886 SUPERFAMILY SSF55271 15 129 4.05E-40 T 21-04-2016 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 RAF_RS02090 73e196764f4ceb8dd5107870b4182e34 886 SMART SM00533 302 615 1.3E-105 T 21-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 RAF_RS02090 73e196764f4ceb8dd5107870b4182e34 886 Gene3D G3DSA:3.40.1170.10 10 134 2.9E-49 T 21-04-2016 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 RAF_RS02090 73e196764f4ceb8dd5107870b4182e34 886 SUPERFAMILY SSF48334 286 590 1.15E-75 T 21-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 RAF_RS02090 73e196764f4ceb8dd5107870b4182e34 886 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 16 884 7.6E-261 T 21-04-2016 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 RAF_RS02090 73e196764f4ceb8dd5107870b4182e34 886 SUPERFAMILY SSF53150 131 298 1.44E-31 T 21-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 RAF_RS02090 73e196764f4ceb8dd5107870b4182e34 886 Gene3D G3DSA:3.30.420.110 141 271 8.0E-27 T 21-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 RAF_RS02090 73e196764f4ceb8dd5107870b4182e34 886 PANTHER PTHR11361:SF86 16 884 0.0 T 21-04-2016 RAF_RS02090 73e196764f4ceb8dd5107870b4182e34 886 Pfam PF05190 MutS family domain IV 451 542 1.4E-22 T 21-04-2016 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 RAF_RS02090 73e196764f4ceb8dd5107870b4182e34 886 Pfam PF05192 MutS domain III 288 583 7.8E-37 T 21-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 RAF_RS02090 73e196764f4ceb8dd5107870b4182e34 886 Pfam PF00488 MutS domain V 637 823 2.5E-84 T 21-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 RAF_RS02090 73e196764f4ceb8dd5107870b4182e34 886 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 715 731 - T 21-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 RAF_RS02090 73e196764f4ceb8dd5107870b4182e34 886 PIRSF PIRSF037677 9 871 5.7E-174 T 21-04-2016 RAF_RS02090 73e196764f4ceb8dd5107870b4182e34 886 Pfam PF01624 MutS domain I 16 133 4.1E-42 T 21-04-2016 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 RAF_RS00380 5c9b364266056e42f26a7ccfca9d0ec7 259 PANTHER PTHR30589:SF0 1 253 3.5E-92 T 21-04-2016 RAF_RS00380 5c9b364266056e42f26a7ccfca9d0ec7 259 PANTHER PTHR30589 1 253 3.5E-92 T 21-04-2016 RAF_RS00380 5c9b364266056e42f26a7ccfca9d0ec7 259 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 137 149 - T 21-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 RAF_RS00380 5c9b364266056e42f26a7ccfca9d0ec7 259 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 5 259 18.701 T 21-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 RAF_RS00380 5c9b364266056e42f26a7ccfca9d0ec7 259 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 8 253 6.3E-77 T 21-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 RAF_RS00380 5c9b364266056e42f26a7ccfca9d0ec7 259 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 2 252 1.2E-74 T 21-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 RAF_RS01485 c835e0246a7f6127e6aeb9f32db7b7ce 589 SUPERFAMILY SSF90123 18 313 2.22E-34 T 21-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RAF_RS01485 c835e0246a7f6127e6aeb9f32db7b7ce 589 Gene3D G3DSA:1.20.1560.10 18 322 9.3E-25 T 21-04-2016 RAF_RS01485 c835e0246a7f6127e6aeb9f32db7b7ce 589 PANTHER PTHR24221 16 583 6.2E-156 T 21-04-2016 RAF_RS01485 c835e0246a7f6127e6aeb9f32db7b7ce 589 SUPERFAMILY SSF52540 339 583 1.57E-88 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01485 c835e0246a7f6127e6aeb9f32db7b7ce 589 Pfam PF00005 ABC transporter 368 513 7.3E-32 T 21-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAF_RS01485 c835e0246a7f6127e6aeb9f32db7b7ce 589 Pfam PF00664 ABC transporter transmembrane region 27 295 1.2E-13 T 21-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RAF_RS01485 c835e0246a7f6127e6aeb9f32db7b7ce 589 Gene3D G3DSA:3.40.50.300 346 578 3.2E-76 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01485 c835e0246a7f6127e6aeb9f32db7b7ce 589 ProSitePatterns PS00211 ABC transporters family signature. 485 499 - T 21-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAF_RS01485 c835e0246a7f6127e6aeb9f32db7b7ce 589 SMART SM00382 373 559 2.3E-14 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS00595 46ac581f8e950625d014a3198fdee361 309 Gene3D G3DSA:1.10.286.20 206 247 1.6E-18 T 21-04-2016 RAF_RS00595 46ac581f8e950625d014a3198fdee361 309 SUPERFAMILY SSF46934 5 58 1.6E-18 T 21-04-2016 IPR009060 UBA-like GO:0005515 RAF_RS00595 46ac581f8e950625d014a3198fdee361 309 ProSitePatterns PS01127 Elongation factor Ts signature 2. 77 87 - T 21-04-2016 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 RAF_RS00595 46ac581f8e950625d014a3198fdee361 309 PANTHER PTHR11741 1 309 4.3E-126 T 21-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 RAF_RS00595 46ac581f8e950625d014a3198fdee361 309 Pfam PF00889 Elongation factor TS 73 290 1.7E-65 T 21-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RAF_RS00595 46ac581f8e950625d014a3198fdee361 309 Gene3D G3DSA:3.30.479.20 248 289 1.0E-19 T 21-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RAF_RS00595 46ac581f8e950625d014a3198fdee361 309 Gene3D G3DSA:3.30.479.20 152 199 1.0E-19 T 21-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RAF_RS00595 46ac581f8e950625d014a3198fdee361 309 Gene3D G3DSA:1.10.8.10 5 57 6.9E-27 T 21-04-2016 RAF_RS00595 46ac581f8e950625d014a3198fdee361 309 ProSitePatterns PS01126 Elongation factor Ts signature 1. 14 29 - T 21-04-2016 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 RAF_RS00595 46ac581f8e950625d014a3198fdee361 309 Gene3D G3DSA:3.30.479.20 59 150 6.8E-18 T 21-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RAF_RS00595 46ac581f8e950625d014a3198fdee361 309 SUPERFAMILY SSF54713 150 307 2.22E-43 T 21-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RAF_RS00595 46ac581f8e950625d014a3198fdee361 309 Hamap MF_00050 Elongation factor Ts [tsf]. 1 307 71.479 T 21-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 RAF_RS00595 46ac581f8e950625d014a3198fdee361 309 SUPERFAMILY SSF54713 58 146 4.71E-21 T 21-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 RAF_RS00595 46ac581f8e950625d014a3198fdee361 309 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 5 307 2.2E-91 T 21-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 RAF_RS04510 edcc54afcf4316567aa7aa9296ac5716 456 Pfam PF03448 MgtE intracellular N domain 44 145 6.2E-13 T 21-04-2016 IPR006668 Magnesium transporter, MgtE intracellular domain RAF_RS04510 edcc54afcf4316567aa7aa9296ac5716 456 Pfam PF01769 Divalent cation transporter 327 448 2.0E-23 T 21-04-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 RAF_RS04510 edcc54afcf4316567aa7aa9296ac5716 456 SUPERFAMILY SSF161093 284 455 6.15E-46 T 21-04-2016 RAF_RS04510 edcc54afcf4316567aa7aa9296ac5716 456 PANTHER PTHR41394 18 455 1.1E-33 T 21-04-2016 RAF_RS04510 edcc54afcf4316567aa7aa9296ac5716 456 Gene3D G3DSA:3.10.580.10 142 267 4.3E-16 T 21-04-2016 RAF_RS04510 edcc54afcf4316567aa7aa9296ac5716 456 SUPERFAMILY SSF158791 20 144 1.96E-17 T 21-04-2016 RAF_RS04510 edcc54afcf4316567aa7aa9296ac5716 456 SUPERFAMILY SSF54631 146 280 2.27E-20 T 21-04-2016 RAF_RS04510 edcc54afcf4316567aa7aa9296ac5716 456 Gene3D G3DSA:1.25.60.10 20 137 2.0E-16 T 21-04-2016 RAF_RS04510 edcc54afcf4316567aa7aa9296ac5716 456 Gene3D G3DSA:1.10.357.20 285 455 5.3E-51 T 21-04-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 RAF_RS04510 edcc54afcf4316567aa7aa9296ac5716 456 TIGRFAM TIGR00400 mgtE: magnesium transporter 20 455 4.3E-85 T 21-04-2016 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 RAF_RS04510 edcc54afcf4316567aa7aa9296ac5716 456 SMART SM00924 44 147 4.7E-17 T 21-04-2016 IPR006668 Magnesium transporter, MgtE intracellular domain RAF_RS04510 edcc54afcf4316567aa7aa9296ac5716 456 Pfam PF00571 CBS domain 208 261 8.8E-6 T 21-04-2016 IPR000644 CBS domain RAF_RS04510 edcc54afcf4316567aa7aa9296ac5716 456 Pfam PF00571 CBS domain 147 200 4.4E-4 T 21-04-2016 IPR000644 CBS domain RAF_RS00040 ec99f0ff0319693f7467f5e0717a9576 264 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 15 50 4.9E-8 T 21-04-2016 IPR001451 Hexapeptide repeat RAF_RS00040 ec99f0ff0319693f7467f5e0717a9576 264 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 107 140 1.7E-7 T 21-04-2016 IPR001451 Hexapeptide repeat RAF_RS00040 ec99f0ff0319693f7467f5e0717a9576 264 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 178 260 1.1E-14 T 21-04-2016 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 RAF_RS00040 ec99f0ff0319693f7467f5e0717a9576 264 Gene3D G3DSA:1.20.1180.10 195 261 3.2E-9 T 21-04-2016 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 RAF_RS00040 ec99f0ff0319693f7467f5e0717a9576 264 PANTHER PTHR23416:SF8 6 252 3.7E-102 T 21-04-2016 RAF_RS00040 ec99f0ff0319693f7467f5e0717a9576 264 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 6 260 3.6E-105 T 21-04-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 RAF_RS00040 ec99f0ff0319693f7467f5e0717a9576 264 PANTHER PTHR23416 6 252 3.7E-102 T 21-04-2016 RAF_RS00040 ec99f0ff0319693f7467f5e0717a9576 264 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 3 261 42.783 T 21-04-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 RAF_RS00040 ec99f0ff0319693f7467f5e0717a9576 264 SUPERFAMILY SSF51161 4 257 5.11E-62 T 21-04-2016 IPR011004 Trimeric LpxA-like RAF_RS00040 ec99f0ff0319693f7467f5e0717a9576 264 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 151 179 - T 21-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 RAF_RS00040 ec99f0ff0319693f7467f5e0717a9576 264 PIRSF PIRSF000456 2 264 4.3E-101 T 21-04-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 RAF_RS00040 ec99f0ff0319693f7467f5e0717a9576 264 Gene3D G3DSA:2.160.10.10 5 186 1.6E-42 T 21-04-2016 RAF_RS02485 d04d42ba60cc55eacfaf10822e332e86 174 PANTHER PTHR11995 21 163 9.6E-122 T 21-04-2016 RAF_RS02485 d04d42ba60cc55eacfaf10822e332e86 174 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 47 156 9.4E-22 T 21-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 RAF_RS02485 d04d42ba60cc55eacfaf10822e332e86 174 Gene3D G3DSA:3.40.50.700 32 160 4.4E-33 T 21-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 RAF_RS02485 d04d42ba60cc55eacfaf10822e332e86 174 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 10 161 42.706 T 21-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 RAF_RS02485 d04d42ba60cc55eacfaf10822e332e86 174 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 21 162 2.3E-77 T 21-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 RAF_RS02485 d04d42ba60cc55eacfaf10822e332e86 174 PANTHER PTHR11995:SF19 21 163 9.6E-122 T 21-04-2016 RAF_RS02485 d04d42ba60cc55eacfaf10822e332e86 174 SUPERFAMILY SSF56770 19 164 3.14E-67 T 21-04-2016 RAF_RS02485 d04d42ba60cc55eacfaf10822e332e86 174 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 128 144 - T 21-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 RAF_RS01635 e851f9656cf04920dbef61f15197b27b 155 Gene3D G3DSA:3.90.1180.10 3 145 5.3E-55 T 21-04-2016 IPR023564 Ribosomal protein L13 domain GO:0003735|GO:0005840|GO:0006412 RAF_RS01635 e851f9656cf04920dbef61f15197b27b 155 ProSitePatterns PS00783 Ribosomal protein L13 signature. 109 131 - T 21-04-2016 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 RAF_RS01635 e851f9656cf04920dbef61f15197b27b 155 SUPERFAMILY SSF52161 4 147 1.96E-50 T 21-04-2016 IPR023564 Ribosomal protein L13 domain GO:0003735|GO:0005840|GO:0006412 RAF_RS01635 e851f9656cf04920dbef61f15197b27b 155 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 4 145 2.0E-58 T 21-04-2016 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 RAF_RS01635 e851f9656cf04920dbef61f15197b27b 155 Pfam PF00572 Ribosomal protein L13 14 141 7.9E-48 T 21-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RAF_RS01635 e851f9656cf04920dbef61f15197b27b 155 PIRSF PIRSF002181 1 155 1.4E-44 T 21-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RAF_RS01635 e851f9656cf04920dbef61f15197b27b 155 PANTHER PTHR11545 2 145 5.3E-57 T 21-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RAF_RS01635 e851f9656cf04920dbef61f15197b27b 155 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 145 26.106 T 21-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RAF_RS01830 64143f487d7ba86a82bf6e4c7eb42025 483 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 228 247 - T 21-04-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 RAF_RS01830 64143f487d7ba86a82bf6e4c7eb42025 483 Gene3D G3DSA:3.40.718.10 5 353 4.4E-123 T 21-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RAF_RS01830 64143f487d7ba86a82bf6e4c7eb42025 483 PANTHER PTHR11835:SF43 6 349 4.1E-245 T 21-04-2016 RAF_RS01830 64143f487d7ba86a82bf6e4c7eb42025 483 SMART SM01329 6 337 6.2E-148 T 21-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RAF_RS01830 64143f487d7ba86a82bf6e4c7eb42025 483 PANTHER PTHR11835 6 349 4.1E-245 T 21-04-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 RAF_RS01830 64143f487d7ba86a82bf6e4c7eb42025 483 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 7 337 2.8E-95 T 21-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 RAF_RS01830 64143f487d7ba86a82bf6e4c7eb42025 483 TIGRFAM TIGR02924 ICDH_alpha: isocitrate dehydrogenase 5 477 1.8E-244 T 21-04-2016 IPR014273 Isocitrate dehydrogenase, alphaproteobacteria-type GO:0004450|GO:0006097|GO:0006099|GO:0046872|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 RAF_RS01830 64143f487d7ba86a82bf6e4c7eb42025 483 SUPERFAMILY SSF53659 5 341 1.8E-114 T 21-04-2016 RAF_RS03760 ed1e7962f9c14bda1a642c71fcf2f639 427 PIRSF PIRSF006060 1 426 1.8E-74 T 21-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 RAF_RS03760 ed1e7962f9c14bda1a642c71fcf2f639 427 PANTHER PTHR11785:SF259 1 418 1.0E-70 T 21-04-2016 RAF_RS03760 ed1e7962f9c14bda1a642c71fcf2f639 427 PANTHER PTHR11785 1 418 1.0E-70 T 21-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 RAF_RS03760 ed1e7962f9c14bda1a642c71fcf2f639 427 Pfam PF13520 Amino acid permease 5 397 3.1E-51 T 21-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 RAF_RS00490 9982499d85d2e1d5b2a62ae68495f5df 384 SUPERFAMILY SSF109604 13 380 2.18E-84 T 21-04-2016 RAF_RS00490 9982499d85d2e1d5b2a62ae68495f5df 384 Hamap MF_01212 Deoxyguanosinetriphosphate triphosphohydrolase-like protein. 2 376 37.202 T 21-04-2016 IPR023023 Deoxyguanosinetriphosphate triphosphohydrolase, type 2 RAF_RS00490 9982499d85d2e1d5b2a62ae68495f5df 384 Pfam PF13286 Phosphohydrolase-associated domain 285 373 3.7E-23 T 21-04-2016 IPR026875 Phosphohydrolase-associated domain RAF_RS00490 9982499d85d2e1d5b2a62ae68495f5df 384 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 25 377 7.1E-113 T 21-04-2016 IPR006261 Deoxyguanosinetriphosphate triphosphohydrolase GO:0000287|GO:0008832|GO:0046039 RAF_RS00490 9982499d85d2e1d5b2a62ae68495f5df 384 SMART SM00471 58 207 6.1E-12 T 21-04-2016 IPR003607 HD/PDEase domain RAF_RS00490 9982499d85d2e1d5b2a62ae68495f5df 384 PANTHER PTHR11373:SF25 1 373 2.8E-76 T 21-04-2016 RAF_RS00490 9982499d85d2e1d5b2a62ae68495f5df 384 PANTHER PTHR11373 1 373 2.8E-76 T 21-04-2016 RAF_RS00490 9982499d85d2e1d5b2a62ae68495f5df 384 Gene3D G3DSA:1.10.3210.10 273 378 3.6E-81 T 21-04-2016 IPR006674 HD domain RAF_RS00490 9982499d85d2e1d5b2a62ae68495f5df 384 Gene3D G3DSA:1.10.3210.10 21 216 3.6E-81 T 21-04-2016 IPR006674 HD domain RAF_RS00490 9982499d85d2e1d5b2a62ae68495f5df 384 Pfam PF01966 HD domain 62 196 1.1E-16 T 21-04-2016 IPR006674 HD domain RAF_RS06655 755629a1031f5713deee71ed5f296d80 330 Hamap MF_01454 GTPase Obg [obg]. 2 327 45.742 T 21-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 RAF_RS06655 755629a1031f5713deee71ed5f296d80 330 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 325 2.2E-138 T 21-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 RAF_RS06655 755629a1031f5713deee71ed5f296d80 330 PIRSF PIRSF002401 1 330 7.1E-133 T 21-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 RAF_RS06655 755629a1031f5713deee71ed5f296d80 330 ProSitePatterns PS00905 GTP1/OBG family signature. 212 225 - T 21-04-2016 IPR006074 GTP1/OBG, conserved site GO:0005525 RAF_RS06655 755629a1031f5713deee71ed5f296d80 330 SUPERFAMILY SSF52540 161 327 9.96E-49 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06655 755629a1031f5713deee71ed5f296d80 330 PANTHER PTHR11702 1 329 5.6E-148 T 21-04-2016 RAF_RS06655 755629a1031f5713deee71ed5f296d80 330 Gene3D G3DSA:3.40.50.300 161 327 1.0E-51 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06655 755629a1031f5713deee71ed5f296d80 330 Pfam PF01926 50S ribosome-binding GTPase 161 280 1.2E-24 T 21-04-2016 IPR006073 GTP binding domain GO:0005525 RAF_RS06655 755629a1031f5713deee71ed5f296d80 330 SUPERFAMILY SSF82051 2 158 7.06E-54 T 21-04-2016 IPR006169 GTP1/OBG domain GO:0005525 RAF_RS06655 755629a1031f5713deee71ed5f296d80 330 Pfam PF01018 GTP1/OBG 3 158 5.5E-58 T 21-04-2016 IPR006169 GTP1/OBG domain GO:0005525 RAF_RS06655 755629a1031f5713deee71ed5f296d80 330 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 3.3E-37 T 21-04-2016 IPR006073 GTP binding domain GO:0005525 RAF_RS06655 755629a1031f5713deee71ed5f296d80 330 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 210 225 3.3E-37 T 21-04-2016 IPR006073 GTP binding domain GO:0005525 RAF_RS06655 755629a1031f5713deee71ed5f296d80 330 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 3.3E-37 T 21-04-2016 IPR006073 GTP binding domain GO:0005525 RAF_RS06655 755629a1031f5713deee71ed5f296d80 330 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 227 245 3.3E-37 T 21-04-2016 IPR006073 GTP binding domain GO:0005525 RAF_RS06655 755629a1031f5713deee71ed5f296d80 330 Gene3D G3DSA:2.70.210.12 2 155 3.2E-54 T 21-04-2016 IPR006169 GTP1/OBG domain GO:0005525 RAF_RS06655 755629a1031f5713deee71ed5f296d80 330 PANTHER PTHR11702:SF3 1 329 5.6E-148 T 21-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 RAF_RS04865 e231cd1e9d05b8c8025096d0027c00d9 665 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 621 638 - T 21-04-2016 IPR001882 Biotin-binding site RAF_RS04865 e231cd1e9d05b8c8025096d0027c00d9 665 SUPERFAMILY SSF56059 87 352 4.07E-70 T 21-04-2016 RAF_RS04865 e231cd1e9d05b8c8025096d0027c00d9 665 SUPERFAMILY SSF51246 335 450 5.23E-37 T 21-04-2016 IPR011054 Rudiment single hybrid motif RAF_RS04865 e231cd1e9d05b8c8025096d0027c00d9 665 Gene3D G3DSA:3.40.50.20 6 133 2.5E-48 T 21-04-2016 IPR016185 Pre-ATP-grasp domain RAF_RS04865 e231cd1e9d05b8c8025096d0027c00d9 665 Gene3D G3DSA:3.30.1490.20 134 205 4.2E-29 T 21-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RAF_RS04865 e231cd1e9d05b8c8025096d0027c00d9 665 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 119 326 7.0E-79 T 21-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RAF_RS04865 e231cd1e9d05b8c8025096d0027c00d9 665 Gene3D G3DSA:3.30.470.20 207 450 7.8E-97 T 21-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RAF_RS04865 e231cd1e9d05b8c8025096d0027c00d9 665 PANTHER PTHR18866:SF92 5 664 0.0 T 21-04-2016 RAF_RS04865 e231cd1e9d05b8c8025096d0027c00d9 665 Pfam PF02785 Biotin carboxylase C-terminal domain 340 447 1.2E-34 T 21-04-2016 IPR005482 Biotin carboxylase, C-terminal RAF_RS04865 e231cd1e9d05b8c8025096d0027c00d9 665 Pfam PF00364 Biotin-requiring enzyme 604 663 1.0E-13 T 21-04-2016 IPR000089 Biotin/lipoyl attachment RAF_RS04865 e231cd1e9d05b8c8025096d0027c00d9 665 PANTHER PTHR18866 5 664 0.0 T 21-04-2016 RAF_RS04865 e231cd1e9d05b8c8025096d0027c00d9 665 SMART SM00878 340 447 1.0E-51 T 21-04-2016 IPR005482 Biotin carboxylase, C-terminal RAF_RS04865 e231cd1e9d05b8c8025096d0027c00d9 665 Pfam PF00289 Biotin carboxylase, N-terminal domain 6 113 6.0E-42 T 21-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain RAF_RS04865 e231cd1e9d05b8c8025096d0027c00d9 665 SUPERFAMILY SSF51230 590 664 2.75E-17 T 21-04-2016 IPR011053 Single hybrid motif RAF_RS04865 e231cd1e9d05b8c8025096d0027c00d9 665 SUPERFAMILY SSF52440 4 117 1.44E-44 T 21-04-2016 IPR016185 Pre-ATP-grasp domain RAF_RS04865 e231cd1e9d05b8c8025096d0027c00d9 665 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 157 171 - T 21-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RAF_RS04865 e231cd1e9d05b8c8025096d0027c00d9 665 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 290 297 - T 21-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RAF_RS04865 e231cd1e9d05b8c8025096d0027c00d9 665 Gene3D G3DSA:2.40.50.100 595 664 1.7E-21 T 21-04-2016 RAF_RS00010 228de7d421868a8d15d853123a3743dd 105 PANTHER PTHR10438 7 105 5.2E-45 T 21-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RAF_RS00010 228de7d421868a8d15d853123a3743dd 105 TIGRFAM TIGR01068 thioredoxin: thioredoxin 7 104 8.4E-43 T 21-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RAF_RS00010 228de7d421868a8d15d853123a3743dd 105 PRINTS PR00421 Thioredoxin family signature 21 29 8.5E-10 T 21-04-2016 RAF_RS00010 228de7d421868a8d15d853123a3743dd 105 PRINTS PR00421 Thioredoxin family signature 29 38 8.5E-10 T 21-04-2016 RAF_RS00010 228de7d421868a8d15d853123a3743dd 105 PRINTS PR00421 Thioredoxin family signature 69 80 8.5E-10 T 21-04-2016 RAF_RS00010 228de7d421868a8d15d853123a3743dd 105 ProSitePatterns PS00194 Thioredoxin family active site. 22 40 - T 21-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 RAF_RS00010 228de7d421868a8d15d853123a3743dd 105 PANTHER PTHR10438:SF256 7 105 5.2E-45 T 21-04-2016 RAF_RS00010 228de7d421868a8d15d853123a3743dd 105 PIRSF PIRSF000077 1 105 5.6E-45 T 21-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RAF_RS00010 228de7d421868a8d15d853123a3743dd 105 Gene3D G3DSA:3.40.30.10 5 103 8.7E-38 T 21-04-2016 IPR012336 Thioredoxin-like fold RAF_RS00010 228de7d421868a8d15d853123a3743dd 105 SUPERFAMILY SSF52833 7 103 4.37E-37 T 21-04-2016 IPR012336 Thioredoxin-like fold RAF_RS00010 228de7d421868a8d15d853123a3743dd 105 Pfam PF00085 Thioredoxin 5 103 1.7E-33 T 21-04-2016 IPR013766 Thioredoxin domain GO:0045454 RAF_RS06430 2ebd17186e9df9a32e830ac1b807451e 71 PANTHER PTHR33370 1 71 2.9E-40 T 21-04-2016 RAF_RS06430 2ebd17186e9df9a32e830ac1b807451e 71 Gene3D G3DSA:2.40.50.140 1 71 2.7E-36 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS06430 2ebd17186e9df9a32e830ac1b807451e 71 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 5.4E-26 T 21-04-2016 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 RAF_RS06430 2ebd17186e9df9a32e830ac1b807451e 71 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 3.3E-33 T 21-04-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 RAF_RS06430 2ebd17186e9df9a32e830ac1b807451e 71 SUPERFAMILY SSF50249 1 71 1.1E-26 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS06430 2ebd17186e9df9a32e830ac1b807451e 71 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 71 24.125 T 21-04-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 RAF_RS06020 b308a268ff710997697b75b1ef65d283 428 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 269 383 1.7E-36 T 21-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal RAF_RS06020 b308a268ff710997697b75b1ef65d283 428 PANTHER PTHR11712 1 428 9.3E-198 T 21-04-2016 RAF_RS06020 b308a268ff710997697b75b1ef65d283 428 SUPERFAMILY SSF53901 229 425 2.34E-68 T 21-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RAF_RS06020 b308a268ff710997697b75b1ef65d283 428 PIRSF PIRSF000447 5 427 2.5E-177 T 21-04-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 RAF_RS06020 b308a268ff710997697b75b1ef65d283 428 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 168 184 - T 21-04-2016 IPR018201 Beta-ketoacyl synthase, active site RAF_RS06020 b308a268ff710997697b75b1ef65d283 428 Gene3D G3DSA:3.40.47.10 278 425 1.9E-57 T 21-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RAF_RS06020 b308a268ff710997697b75b1ef65d283 428 Gene3D G3DSA:3.40.47.10 4 274 7.1E-74 T 21-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RAF_RS06020 b308a268ff710997697b75b1ef65d283 428 SUPERFAMILY SSF53901 8 268 4.46E-73 T 21-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RAF_RS06020 b308a268ff710997697b75b1ef65d283 428 PANTHER PTHR11712:SF273 1 428 9.3E-198 T 21-04-2016 RAF_RS06020 b308a268ff710997697b75b1ef65d283 428 SMART SM00825 Beta-ketoacyl synthase 10 428 4.6E-17 T 21-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RAF_RS06020 b308a268ff710997697b75b1ef65d283 428 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 8 424 1.0E-186 T 21-04-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 RAF_RS06020 b308a268ff710997697b75b1ef65d283 428 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 8 261 1.5E-60 T 21-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal RAF_RS01840 c653fe4132a8648744d3c00568381bdb 357 PANTHER PTHR33932 27 195 7.6E-36 T 21-04-2016 RAF_RS01840 c653fe4132a8648744d3c00568381bdb 357 PANTHER PTHR33932:SF1 27 195 7.6E-36 T 21-04-2016 RAF_RS01840 c653fe4132a8648744d3c00568381bdb 357 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 223 346 3.6E-24 T 21-04-2016 IPR007182 Na+/H+ antiporter MnhB subunit-related protein RAF_RS01840 c653fe4132a8648744d3c00568381bdb 357 Pfam PF13244 Domain of unknown function (DUF4040) 30 94 6.0E-18 T 21-04-2016 IPR025383 Domain of unknown function DUF4040 RAF_RS01215 27e9d54e352996ec83d3cf661182c10f 251 Pfam PF13525 Outer membrane lipoprotein 34 225 8.0E-46 T 21-04-2016 RAF_RS01215 27e9d54e352996ec83d3cf661182c10f 251 PANTHER PTHR37423 5 247 3.5E-52 T 21-04-2016 RAF_RS01215 27e9d54e352996ec83d3cf661182c10f 251 SMART SM00028 70 103 68.0 T 21-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RAF_RS01215 27e9d54e352996ec83d3cf661182c10f 251 SMART SM00028 33 66 8.9 T 21-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RAF_RS01215 27e9d54e352996ec83d3cf661182c10f 251 SMART SM00028 203 233 190.0 T 21-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RAF_RS01215 27e9d54e352996ec83d3cf661182c10f 251 Gene3D G3DSA:1.25.40.10 172 227 3.5E-6 T 21-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RAF_RS01215 27e9d54e352996ec83d3cf661182c10f 251 SUPERFAMILY SSF48452 107 242 2.2E-7 T 21-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RAF_RS01215 27e9d54e352996ec83d3cf661182c10f 251 SUPERFAMILY SSF48452 33 152 3.6E-12 T 21-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RAF_RS01215 27e9d54e352996ec83d3cf661182c10f 251 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 1 234 43.151 T 21-04-2016 IPR017689 Outer membrane protein assembly factor BamD RAF_RS01215 27e9d54e352996ec83d3cf661182c10f 251 Gene3D G3DSA:1.25.40.10 35 103 4.2E-10 T 21-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RAF_RS01215 27e9d54e352996ec83d3cf661182c10f 251 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 6 239 5.7E-78 T 21-04-2016 IPR017689 Outer membrane protein assembly factor BamD RAF_RS01345 6fca2769d850d976f42e1791d72b6b12 313 SUPERFAMILY SSF53850 23 283 4.16E-49 T 21-04-2016 RAF_RS01345 6fca2769d850d976f42e1791d72b6b12 313 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 7 296 4.9E-50 T 21-04-2016 IPR011852 TRAP transporter solute receptor, TAXI family RAF_RS01345 6fca2769d850d976f42e1791d72b6b12 313 Gene3D G3DSA:3.40.190.10 23 107 5.2E-31 T 21-04-2016 RAF_RS01345 6fca2769d850d976f42e1791d72b6b12 313 Gene3D G3DSA:3.40.190.10 248 307 5.2E-31 T 21-04-2016 RAF_RS01345 6fca2769d850d976f42e1791d72b6b12 313 Pfam PF16868 NMT1-like family 28 306 8.5E-52 T 21-04-2016 IPR011852 TRAP transporter solute receptor, TAXI family RAF_RS01345 6fca2769d850d976f42e1791d72b6b12 313 PANTHER PTHR30024:SF13 21 264 6.9E-31 T 21-04-2016 RAF_RS01345 6fca2769d850d976f42e1791d72b6b12 313 PANTHER PTHR30024 21 264 6.9E-31 T 21-04-2016 RAF_RS01345 6fca2769d850d976f42e1791d72b6b12 313 Gene3D G3DSA:3.40.190.10 116 247 2.4E-21 T 21-04-2016 RAF_RS03000 5ece366a2ea3de91a25a74044fb8df08 818 Gene3D G3DSA:3.30.56.10 155 181 1.0E-21 T 21-04-2016 RAF_RS03000 5ece366a2ea3de91a25a74044fb8df08 818 Gene3D G3DSA:3.30.56.10 1 38 1.0E-21 T 21-04-2016 RAF_RS03000 5ece366a2ea3de91a25a74044fb8df08 818 SMART SM00873 212 408 8.7E-71 T 21-04-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 RAF_RS03000 5ece366a2ea3de91a25a74044fb8df08 818 Pfam PF03147 Ferredoxin-fold anticodon binding domain 724 817 3.6E-22 T 21-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 RAF_RS03000 5ece366a2ea3de91a25a74044fb8df08 818 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 817 4.4E-222 T 21-04-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RAF_RS03000 5ece366a2ea3de91a25a74044fb8df08 818 Gene3D G3DSA:2.40.50.140 40 154 7.3E-37 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS03000 5ece366a2ea3de91a25a74044fb8df08 818 SUPERFAMILY SSF55681 489 708 1.14E-40 T 21-04-2016 RAF_RS03000 5ece366a2ea3de91a25a74044fb8df08 818 SMART SM00896 724 817 1.5E-31 T 21-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 RAF_RS03000 5ece366a2ea3de91a25a74044fb8df08 818 SUPERFAMILY SSF50249 40 195 6.85E-37 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS03000 5ece366a2ea3de91a25a74044fb8df08 818 Gene3D G3DSA:3.30.930.10 513 709 3.4E-48 T 21-04-2016 RAF_RS03000 5ece366a2ea3de91a25a74044fb8df08 818 PANTHER PTHR10947:SF0 2 295 1.3E-204 T 21-04-2016 RAF_RS03000 5ece366a2ea3de91a25a74044fb8df08 818 PANTHER PTHR10947:SF0 325 817 1.3E-204 T 21-04-2016 RAF_RS03000 5ece366a2ea3de91a25a74044fb8df08 818 PANTHER PTHR10947 2 295 1.3E-204 T 21-04-2016 RAF_RS03000 5ece366a2ea3de91a25a74044fb8df08 818 PANTHER PTHR10947 325 817 1.3E-204 T 21-04-2016 RAF_RS03000 5ece366a2ea3de91a25a74044fb8df08 818 SUPERFAMILY SSF56037 201 420 7.32E-58 T 21-04-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 RAF_RS03000 5ece366a2ea3de91a25a74044fb8df08 818 Gene3D G3DSA:3.50.40.10 199 416 1.0E-84 T 21-04-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 RAF_RS03000 5ece366a2ea3de91a25a74044fb8df08 818 SUPERFAMILY SSF46955 426 497 1.83E-17 T 21-04-2016 IPR009061 Putative DNA-binding domain RAF_RS03000 5ece366a2ea3de91a25a74044fb8df08 818 Pfam PF01588 Putative tRNA binding domain 46 145 3.8E-22 T 21-04-2016 IPR002547 tRNA-binding domain GO:0000049 Reactome: REACT_71 RAF_RS03000 5ece366a2ea3de91a25a74044fb8df08 818 Pfam PF03483 B3/4 domain 212 408 1.2E-52 T 21-04-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 RAF_RS03000 5ece366a2ea3de91a25a74044fb8df08 818 Gene3D G3DSA:3.30.56.20 424 497 5.1E-22 T 21-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 RAF_RS03000 5ece366a2ea3de91a25a74044fb8df08 818 SMART SM00874 425 493 2.2E-23 T 21-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 RAF_RS03000 5ece366a2ea3de91a25a74044fb8df08 818 SUPERFAMILY SSF54991 722 817 2.22E-24 T 21-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 RAF_RS03000 5ece366a2ea3de91a25a74044fb8df08 818 Pfam PF03484 tRNA synthetase B5 domain 428 493 2.5E-17 T 21-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 RAF_RS03000 5ece366a2ea3de91a25a74044fb8df08 818 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 811 42.288 T 21-04-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RAF_RS03000 5ece366a2ea3de91a25a74044fb8df08 818 Gene3D G3DSA:3.30.70.380 726 817 4.0E-24 T 21-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 RAF_RS06800 214d25c6a5034a38ac126fcf5fb75bff 509 Gene3D G3DSA:3.40.50.300 22 177 4.4E-61 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06800 214d25c6a5034a38ac126fcf5fb75bff 509 PANTHER PTHR11669:SF0 9 369 4.8E-132 T 21-04-2016 RAF_RS06800 214d25c6a5034a38ac126fcf5fb75bff 509 SUPERFAMILY SSF52540 38 236 7.82E-57 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06800 214d25c6a5034a38ac126fcf5fb75bff 509 PANTHER PTHR11669 9 369 4.8E-132 T 21-04-2016 RAF_RS06800 214d25c6a5034a38ac126fcf5fb75bff 509 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 249 377 1.8E-21 T 21-04-2016 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 RAF_RS06800 214d25c6a5034a38ac126fcf5fb75bff 509 Gene3D G3DSA:1.10.8.60 178 256 2.4E-28 T 21-04-2016 RAF_RS06800 214d25c6a5034a38ac126fcf5fb75bff 509 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 10 370 3.0E-132 T 21-04-2016 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 RAF_RS06800 214d25c6a5034a38ac126fcf5fb75bff 509 SMART SM00382 44 189 3.2E-9 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS06800 214d25c6a5034a38ac126fcf5fb75bff 509 Gene3D G3DSA:1.20.272.10 257 370 2.0E-10 T 21-04-2016 RAF_RS06800 214d25c6a5034a38ac126fcf5fb75bff 509 Pfam PF13177 DNA polymerase III, delta subunit 27 189 9.0E-43 T 21-04-2016 RAF_RS06800 214d25c6a5034a38ac126fcf5fb75bff 509 SUPERFAMILY SSF48019 257 379 9.35E-14 T 21-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 RAF_RS02805 7e2f69ab9a849b3889d1a7cee5e5bf0a 304 Pfam PF01343 Peptidase family S49 108 251 1.2E-30 T 21-04-2016 IPR002142 Peptidase S49 GO:0006508|GO:0008233 RAF_RS02805 7e2f69ab9a849b3889d1a7cee5e5bf0a 304 Gene3D G3DSA:3.90.226.10 37 150 5.9E-39 T 21-04-2016 IPR029045 ClpP/crotonase-like domain RAF_RS02805 7e2f69ab9a849b3889d1a7cee5e5bf0a 304 Gene3D G3DSA:3.90.226.10 219 252 5.9E-39 T 21-04-2016 IPR029045 ClpP/crotonase-like domain RAF_RS02805 7e2f69ab9a849b3889d1a7cee5e5bf0a 304 PANTHER PTHR30341:SF1 37 303 1.4E-74 T 21-04-2016 RAF_RS02805 7e2f69ab9a849b3889d1a7cee5e5bf0a 304 SUPERFAMILY SSF52096 183 244 6.28E-37 T 21-04-2016 IPR029045 ClpP/crotonase-like domain RAF_RS02805 7e2f69ab9a849b3889d1a7cee5e5bf0a 304 SUPERFAMILY SSF52096 39 154 6.28E-37 T 21-04-2016 IPR029045 ClpP/crotonase-like domain RAF_RS02805 7e2f69ab9a849b3889d1a7cee5e5bf0a 304 PANTHER PTHR30341 37 303 1.4E-74 T 21-04-2016 RAF_RS06045 f73ddaead8d81be9d254dfcfdeedab77 229 PANTHER PTHR23117 40 227 5.1E-83 T 21-04-2016 RAF_RS06045 f73ddaead8d81be9d254dfcfdeedab77 229 SMART SM00072 43 225 1.7E-60 T 21-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit RAF_RS06045 f73ddaead8d81be9d254dfcfdeedab77 229 Gene3D G3DSA:3.40.50.300 39 84 7.1E-5 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06045 f73ddaead8d81be9d254dfcfdeedab77 229 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 45 222 8.8E-73 T 21-04-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 RAF_RS06045 f73ddaead8d81be9d254dfcfdeedab77 229 Gene3D G3DSA:3.40.50.300 126 226 1.5E-47 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06045 f73ddaead8d81be9d254dfcfdeedab77 229 SUPERFAMILY SSF52540 42 227 1.72E-67 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06045 f73ddaead8d81be9d254dfcfdeedab77 229 PANTHER PTHR23117:SF13 40 227 5.1E-83 T 21-04-2016 RAF_RS06045 f73ddaead8d81be9d254dfcfdeedab77 229 Pfam PF00625 Guanylate kinase 46 222 1.9E-49 T 21-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit RAF_RS06045 f73ddaead8d81be9d254dfcfdeedab77 229 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 7 39 1.8E-8 T 21-04-2016 IPR005728 Rickettsial palindromic element RAF_RS06045 f73ddaead8d81be9d254dfcfdeedab77 229 Gene3D G3DSA:3.30.63.10 85 125 1.6E-23 T 21-04-2016 RAF_RS06045 f73ddaead8d81be9d254dfcfdeedab77 229 Hamap MF_00328 Guanylate kinase [gmk]. 42 225 36.496 T 21-04-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 RAF_RS06045 f73ddaead8d81be9d254dfcfdeedab77 229 ProSitePatterns PS00856 Guanylate kinase-like signature. 78 95 - T 21-04-2016 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 RAF_RS06235 7fb3f832df840fa72b49e59f90fec8e4 671 SUPERFAMILY SSF54292 1 74 1.37E-20 T 21-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RAF_RS06235 7fb3f832df840fa72b49e59f90fec8e4 671 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 145 155 - T 21-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 RAF_RS06235 7fb3f832df840fa72b49e59f90fec8e4 671 SUPERFAMILY SSF53706 213 614 2.88E-89 T 21-04-2016 RAF_RS06235 7fb3f832df840fa72b49e59f90fec8e4 671 SUPERFAMILY SSF54862 75 211 1.13E-35 T 21-04-2016 RAF_RS06235 7fb3f832df840fa72b49e59f90fec8e4 671 Gene3D G3DSA:3.40.50.740 271 456 8.0E-44 T 21-04-2016 RAF_RS06235 7fb3f832df840fa72b49e59f90fec8e4 671 Gene3D G3DSA:3.40.50.740 511 615 8.0E-44 T 21-04-2016 RAF_RS06235 7fb3f832df840fa72b49e59f90fec8e4 671 Pfam PF00384 Molybdopterin oxidoreductase 271 585 3.1E-64 T 21-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 RAF_RS06235 7fb3f832df840fa72b49e59f90fec8e4 671 Pfam PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal 623 659 3.2E-12 T 21-04-2016 IPR015405 NADH-quinone oxidoreductase, chain G, C-terminal GO:0016651|GO:0051536|GO:0055114 RAF_RS06235 7fb3f832df840fa72b49e59f90fec8e4 671 PANTHER PTHR11615:SF115 351 670 1.9E-297 T 21-04-2016 RAF_RS06235 7fb3f832df840fa72b49e59f90fec8e4 671 PANTHER PTHR11615:SF115 3 313 1.9E-297 T 21-04-2016 RAF_RS06235 7fb3f832df840fa72b49e59f90fec8e4 671 SMART SM00929 83 123 1.5E-19 T 21-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 RAF_RS06235 7fb3f832df840fa72b49e59f90fec8e4 671 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 5 584 6.6E-238 T 21-04-2016 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 RAF_RS06235 7fb3f832df840fa72b49e59f90fec8e4 671 PANTHER PTHR11615 351 670 1.9E-297 T 21-04-2016 RAF_RS06235 7fb3f832df840fa72b49e59f90fec8e4 671 PANTHER PTHR11615 3 313 1.9E-297 T 21-04-2016 RAF_RS06235 7fb3f832df840fa72b49e59f90fec8e4 671 Gene3D G3DSA:3.10.20.30 2 54 5.6E-6 T 21-04-2016 IPR012675 Beta-grasp domain RAF_RS06235 7fb3f832df840fa72b49e59f90fec8e4 671 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 98 110 - T 21-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 RAF_RS06235 7fb3f832df840fa72b49e59f90fec8e4 671 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 83 121 1.4E-16 T 21-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 RAF_RS06235 7fb3f832df840fa72b49e59f90fec8e4 671 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 2 76 1.2E-18 T 21-04-2016 RAF_RS06235 7fb3f832df840fa72b49e59f90fec8e4 671 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 31 48 - T 21-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 RAF_RS02080 e59c14af8c3fbecc3c67189b6eb53b45 281 ProDom PD317075 PRECURSOR RP296 SIGNAL 8 281 2.0E-150 T 21-04-2016 IPR020531 Uncharacterised protein family, RP296 RAF_RS02080 e59c14af8c3fbecc3c67189b6eb53b45 281 Pfam PF11019 Protein of unknown function (DUF2608) 39 275 1.9E-61 T 21-04-2016 IPR022565 Protein of unknown function DUF2608 RAF_RS06825 96bddaa6d4562d3bd5ba8a0b1a05847b 79 PANTHER PTHR33713:SF5 1 58 3.1E-19 T 21-04-2016 RAF_RS06825 96bddaa6d4562d3bd5ba8a0b1a05847b 79 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 9 52 7.5E-6 T 21-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RAF_RS06825 96bddaa6d4562d3bd5ba8a0b1a05847b 79 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 9 76 9.9E-12 T 21-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RAF_RS06825 96bddaa6d4562d3bd5ba8a0b1a05847b 79 Gene3D G3DSA:3.40.1620.10 22 54 8.6E-4 T 21-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RAF_RS06825 96bddaa6d4562d3bd5ba8a0b1a05847b 79 SUPERFAMILY SSF143120 10 71 7.59E-10 T 21-04-2016 RAF_RS06825 96bddaa6d4562d3bd5ba8a0b1a05847b 79 PANTHER PTHR33713 1 58 3.1E-19 T 21-04-2016 RAF_RS05015 7634e1892c8d5de42bbcc1b8720e13ed 340 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 8 319 34.686 T 21-04-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAF_RS05015 7634e1892c8d5de42bbcc1b8720e13ed 340 SUPERFAMILY SSF56553 58 178 3.01E-39 T 21-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RAF_RS05015 7634e1892c8d5de42bbcc1b8720e13ed 340 PANTHER PTHR32108 3 332 5.7E-125 T 21-04-2016 RAF_RS05015 7634e1892c8d5de42bbcc1b8720e13ed 340 SUPERFAMILY SSF55257 8 58 4.32E-28 T 21-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAF_RS05015 7634e1892c8d5de42bbcc1b8720e13ed 340 SUPERFAMILY SSF55257 180 232 4.32E-28 T 21-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAF_RS05015 7634e1892c8d5de42bbcc1b8720e13ed 340 SMART SM00662 28 235 2.0E-93 T 21-04-2016 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RAF_RS05015 7634e1892c8d5de42bbcc1b8720e13ed 340 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 259 330 3.0E-36 T 21-04-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAF_RS05015 7634e1892c8d5de42bbcc1b8720e13ed 340 PANTHER PTHR32108:SF0 3 332 5.7E-125 T 21-04-2016 RAF_RS05015 7634e1892c8d5de42bbcc1b8720e13ed 340 Gene3D G3DSA:1.10.150.20 251 330 8.7E-35 T 21-04-2016 RAF_RS05015 7634e1892c8d5de42bbcc1b8720e13ed 340 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 29 319 1.6E-106 T 21-04-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAF_RS05015 7634e1892c8d5de42bbcc1b8720e13ed 340 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 69 158 1.5E-23 T 21-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RAF_RS05015 7634e1892c8d5de42bbcc1b8720e13ed 340 Gene3D G3DSA:3.30.1360.10 22 71 1.6E-9 T 21-04-2016 RAF_RS05015 7634e1892c8d5de42bbcc1b8720e13ed 340 SUPERFAMILY SSF47789 253 328 4.58E-27 T 21-04-2016 RAF_RS05015 7634e1892c8d5de42bbcc1b8720e13ed 340 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 34 229 2.0E-20 T 21-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAF_RS05015 7634e1892c8d5de42bbcc1b8720e13ed 340 Gene3D G3DSA:2.170.120.12 72 178 6.2E-41 T 21-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RAF_RS05015 7634e1892c8d5de42bbcc1b8720e13ed 340 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 253 310 1.1E-24 T 21-04-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 Gene3D G3DSA:3.90.1110.10 363 461 5.1E-65 T 21-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 Gene3D G3DSA:3.90.1110.10 168 245 5.1E-65 T 21-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 18 1368 0.0 T 21-04-2016 IPR010243 DNA-directed RNA polymerase, beta subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 Pfam PF04561 RNA polymerase Rpb2, domain 2 370 471 2.5E-18 T 21-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1093 1105 - T 21-04-2016 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 PANTHER PTHR20856:SF20 1063 1158 0.0 T 21-04-2016 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 PANTHER PTHR20856:SF20 760 947 0.0 T 21-04-2016 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 PANTHER PTHR20856:SF20 357 743 0.0 T 21-04-2016 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 PANTHER PTHR20856:SF20 1211 1373 0.0 T 21-04-2016 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 PANTHER PTHR20856:SF20 2 246 0.0 T 21-04-2016 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 Gene3D G3DSA:2.40.270.10 1090 1271 2.1E-82 T 21-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 Gene3D G3DSA:2.40.270.10 810 837 2.1E-82 T 21-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 Gene3D G3DSA:2.40.50.100 734 809 2.3E-29 T 21-04-2016 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 PANTHER PTHR20856 1063 1158 0.0 T 21-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 PANTHER PTHR20856 760 947 0.0 T 21-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 PANTHER PTHR20856 357 743 0.0 T 21-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 PANTHER PTHR20856 1211 1373 0.0 T 21-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 PANTHER PTHR20856 2 246 0.0 T 21-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 Pfam PF04563 RNA polymerase beta subunit 34 515 1.2E-31 T 21-04-2016 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 Pfam PF00562 RNA polymerase Rpb2, domain 6 736 1292 1.7E-159 T 21-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 Pfam PF10385 RNA polymerase beta subunit external 1 domain 608 673 1.1E-19 T 21-04-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 Gene3D G3DSA:2.40.50.150 1075 1089 1.5E-54 T 21-04-2016 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 Gene3D G3DSA:2.40.50.150 844 954 1.5E-54 T 21-04-2016 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 Gene3D G3DSA:3.90.1100.10 29 166 8.0E-148 T 21-04-2016 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 Gene3D G3DSA:3.90.1100.10 462 608 8.0E-148 T 21-04-2016 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 Gene3D G3DSA:3.90.1100.10 677 731 8.0E-148 T 21-04-2016 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 21 1371 12.128 T 21-04-2016 IPR010243 DNA-directed RNA polymerase, beta subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 Gene3D G3DSA:2.30.150.10 609 673 7.3E-23 T 21-04-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 SUPERFAMILY SSF64484 20 241 0.0 T 21-04-2016 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 SUPERFAMILY SSF64484 360 956 0.0 T 21-04-2016 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 SUPERFAMILY SSF64484 1069 1371 0.0 T 21-04-2016 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 Pfam PF04560 RNA polymerase Rpb2, domain 7 1295 1369 1.3E-25 T 21-04-2016 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RAF_RS00940 1e37971df24f955a2c8068ae265c0094 1373 Pfam PF04565 RNA polymerase Rpb2, domain 3 530 598 2.9E-32 T 21-04-2016 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RAF_RS01780 2595ac53f3e0cb28138721b44f85d6e2 337 Hamap MF_01665 Heme A synthase [ctaA]. 3 337 23.183 T 21-04-2016 IPR023754 Heme A synthase, type 2 GO:0006784|GO:0016020|GO:0016627|GO:0055114 UniPathway: UPA00269 RAF_RS01780 2595ac53f3e0cb28138721b44f85d6e2 337 Pfam PF02628 Cytochrome oxidase assembly protein 8 327 1.1E-101 T 21-04-2016 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 UniPathway: UPA00269 RAF_RS01780 2595ac53f3e0cb28138721b44f85d6e2 337 PANTHER PTHR23289:SF2 5 329 5.3E-105 T 21-04-2016 RAF_RS01780 2595ac53f3e0cb28138721b44f85d6e2 337 PANTHER PTHR23289 5 329 5.3E-105 T 21-04-2016 RAF_RS01435 628a3b1a37a6c40276caeb9f51244fbe 303 Gene3D G3DSA:3.10.25.10 203 302 7.7E-31 T 21-04-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RAF_RS01435 628a3b1a37a6c40276caeb9f51244fbe 303 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 1 297 32.833 T 21-04-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RAF_RS01435 628a3b1a37a6c40276caeb9f51244fbe 303 Pfam PF02911 Formyl transferase, C-terminal domain 200 294 2.1E-28 T 21-04-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RAF_RS01435 628a3b1a37a6c40276caeb9f51244fbe 303 SUPERFAMILY SSF53328 2 203 3.01E-58 T 21-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RAF_RS01435 628a3b1a37a6c40276caeb9f51244fbe 303 Gene3D G3DSA:3.40.50.170 1 201 4.6E-63 T 21-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RAF_RS01435 628a3b1a37a6c40276caeb9f51244fbe 303 SUPERFAMILY SSF50486 201 302 4.08E-30 T 21-04-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 RAF_RS01435 628a3b1a37a6c40276caeb9f51244fbe 303 PANTHER PTHR11138 2 293 6.6E-96 T 21-04-2016 RAF_RS01435 628a3b1a37a6c40276caeb9f51244fbe 303 Pfam PF00551 Formyl transferase 3 178 2.1E-36 T 21-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RAF_RS01435 628a3b1a37a6c40276caeb9f51244fbe 303 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 2 294 5.8E-87 T 21-04-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RAF_RS05635 cb7f67cb022e9ccd831d05135cfc9dc7 99 PANTHER PTHR12910 16 92 9.2E-14 T 21-04-2016 IPR007763 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 GO:0008137|GO:0009055|GO:0016020 RAF_RS05635 cb7f67cb022e9ccd831d05135cfc9dc7 99 PANTHER PTHR12910:SF2 16 92 9.2E-14 T 21-04-2016 RAF_RS05635 cb7f67cb022e9ccd831d05135cfc9dc7 99 Pfam PF05071 NADH ubiquinone oxidoreductase subunit NDUFA12 15 99 2.8E-16 T 21-04-2016 IPR007763 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 GO:0008137|GO:0009055|GO:0016020 RAF_RS01370 16dec11ae201a08ddb3aa8dd3e3b0e89 193 Hamap MF_00052_B Ribonuclease HII [rnhB]. 16 193 33.868 T 21-04-2016 IPR022898 Ribonuclease HII GO:0004523 RAF_RS01370 16dec11ae201a08ddb3aa8dd3e3b0e89 193 Gene3D G3DSA:3.30.420.10 16 154 2.3E-43 T 21-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RAF_RS01370 16dec11ae201a08ddb3aa8dd3e3b0e89 193 SUPERFAMILY SSF53098 11 191 5.31E-64 T 21-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RAF_RS01370 16dec11ae201a08ddb3aa8dd3e3b0e89 193 PANTHER PTHR10954 16 191 1.4E-64 T 21-04-2016 IPR001352 Ribonuclease HII/HIII GO:0003723|GO:0004523 RAF_RS01370 16dec11ae201a08ddb3aa8dd3e3b0e89 193 Pfam PF01351 Ribonuclease HII 18 192 9.9E-38 T 21-04-2016 IPR024567 Ribonuclease HII/HIII domain RAF_RS02750 9fcfbff933cf70e11dc9024d79db0504 587 SUPERFAMILY SSF52540 340 581 1.25E-83 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02750 9fcfbff933cf70e11dc9024d79db0504 587 Gene3D G3DSA:1.20.1560.10 21 336 1.1E-69 T 21-04-2016 RAF_RS02750 9fcfbff933cf70e11dc9024d79db0504 587 ProSitePatterns PS00211 ABC transporters family signature. 484 498 - T 21-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAF_RS02750 9fcfbff933cf70e11dc9024d79db0504 587 PANTHER PTHR24221 16 581 7.0E-193 T 21-04-2016 RAF_RS02750 9fcfbff933cf70e11dc9024d79db0504 587 Pfam PF00664 ABC transporter transmembrane region 33 297 5.6E-42 T 21-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RAF_RS02750 9fcfbff933cf70e11dc9024d79db0504 587 SUPERFAMILY SSF90123 18 334 6.15E-71 T 21-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RAF_RS02750 9fcfbff933cf70e11dc9024d79db0504 587 Gene3D G3DSA:3.40.50.300 347 577 3.6E-77 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02750 9fcfbff933cf70e11dc9024d79db0504 587 SMART SM00382 372 558 3.1E-14 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS02750 9fcfbff933cf70e11dc9024d79db0504 587 Pfam PF00005 ABC transporter 364 512 2.6E-31 T 21-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAF_RS04485 aa020c254e1c8ddb5c3c2e068fff41fb 127 Gene3D G3DSA:3.90.940.10 1 68 1.6E-6 T 21-04-2016 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAF_RS04485 aa020c254e1c8ddb5c3c2e068fff41fb 127 Pfam PF01192 RNA polymerase Rpb6 8 61 1.6E-8 T 21-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAF_RS04485 aa020c254e1c8ddb5c3c2e068fff41fb 127 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 63 13.866 T 21-04-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAF_RS04485 aa020c254e1c8ddb5c3c2e068fff41fb 127 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 61 1.1E-26 T 21-04-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAF_RS04485 aa020c254e1c8ddb5c3c2e068fff41fb 127 SUPERFAMILY SSF63562 1 79 3.14E-16 T 21-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAF_RS04485 aa020c254e1c8ddb5c3c2e068fff41fb 127 SMART SM01409 8 62 3.4E-7 T 21-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAF_RS03145 5d4e4b79bb9e1fc6ca11048dd91854ec 255 PANTHER PTHR20275:SF7 18 249 2.1E-77 T 21-04-2016 RAF_RS03145 5d4e4b79bb9e1fc6ca11048dd91854ec 255 Hamap MF_00361 NAD kinase [nadK]. 4 255 20.96 T 21-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 RAF_RS03145 5d4e4b79bb9e1fc6ca11048dd91854ec 255 Gene3D G3DSA:3.40.50.10330 27 110 6.1E-18 T 21-04-2016 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 RAF_RS03145 5d4e4b79bb9e1fc6ca11048dd91854ec 255 PANTHER PTHR20275 18 249 2.1E-77 T 21-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 RAF_RS03145 5d4e4b79bb9e1fc6ca11048dd91854ec 255 Pfam PF01513 ATP-NAD kinase 33 181 1.8E-19 T 21-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 RAF_RS03145 5d4e4b79bb9e1fc6ca11048dd91854ec 255 SUPERFAMILY SSF111331 26 240 8.11E-53 T 21-04-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain RAF_RS03145 5d4e4b79bb9e1fc6ca11048dd91854ec 255 Gene3D G3DSA:2.60.200.30 111 225 1.2E-27 T 21-04-2016 IPR017437 ATP-NAD kinase, PpnK-type, all-beta GO:0003951|GO:0008152|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 RAF_RS05075 cd3485f265649a25d5157ae5e088462f 179 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 42.856 T 21-04-2016 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05075 cd3485f265649a25d5157ae5e088462f 179 PANTHER PTHR11994 1 177 5.8E-90 T 21-04-2016 RAF_RS05075 cd3485f265649a25d5157ae5e088462f 179 SUPERFAMILY SSF55282 3 179 4.47E-77 T 21-04-2016 IPR022803 Ribosomal protein L5 domain RAF_RS05075 cd3485f265649a25d5157ae5e088462f 179 Pfam PF00673 ribosomal L5P family C-terminus 84 177 1.2E-40 T 21-04-2016 IPR031309 Ribosomal protein L5, C-terminal RAF_RS05075 cd3485f265649a25d5157ae5e088462f 179 Pfam PF00281 Ribosomal protein L5 24 80 4.8E-26 T 21-04-2016 IPR031310 Ribosomal protein L5, N-terminal RAF_RS05075 cd3485f265649a25d5157ae5e088462f 179 PIRSF PIRSF002161 1 179 3.0E-66 T 21-04-2016 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 RAF_RS05075 cd3485f265649a25d5157ae5e088462f 179 Gene3D G3DSA:3.30.1440.10 2 178 5.1E-78 T 21-04-2016 IPR022803 Ribosomal protein L5 domain RAF_RS05075 cd3485f265649a25d5157ae5e088462f 179 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 21-04-2016 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05025 075b05dc7a6e850740e6a7dd077338bf 125 Gene3D G3DSA:1.10.8.50 2 72 1.1E-28 T 21-04-2016 RAF_RS05025 075b05dc7a6e850740e6a7dd077338bf 125 Gene3D G3DSA:4.10.910.10 73 123 3.8E-23 T 21-04-2016 IPR027437 30s ribosomal protein S13, C-terminal RAF_RS05025 075b05dc7a6e850740e6a7dd077338bf 125 Pfam PF00416 Ribosomal protein S13/S18 3 109 9.4E-30 T 21-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05025 075b05dc7a6e850740e6a7dd077338bf 125 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 120 26.446 T 21-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05025 075b05dc7a6e850740e6a7dd077338bf 125 PIRSF PIRSF002134 1 125 7.1E-43 T 21-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05025 075b05dc7a6e850740e6a7dd077338bf 125 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 2.0E-50 T 21-04-2016 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05025 075b05dc7a6e850740e6a7dd077338bf 125 SUPERFAMILY SSF46946 2 122 1.83E-43 T 21-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 RAF_RS05025 075b05dc7a6e850740e6a7dd077338bf 125 PANTHER PTHR10871 2 124 3.0E-58 T 21-04-2016 RAF_RS05025 075b05dc7a6e850740e6a7dd077338bf 125 ProSitePatterns PS00646 Ribosomal protein S13 signature. 88 101 - T 21-04-2016 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 RAF_RS06050 b91f8ceb8ac23c890e9f93eb924abd2f 78 Gene3D G3DSA:1.10.260.40 5 73 2.6E-12 T 21-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RAF_RS06050 b91f8ceb8ac23c890e9f93eb924abd2f 78 Pfam PF01381 Helix-turn-helix 11 69 5.7E-16 T 21-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAF_RS06050 b91f8ceb8ac23c890e9f93eb924abd2f 78 SMART SM00530 10 69 1.9E-8 T 21-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAF_RS06050 b91f8ceb8ac23c890e9f93eb924abd2f 78 SUPERFAMILY SSF47413 5 71 1.01E-9 T 21-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RAF_RS00285 91e3a2c687d084f02b1f437396e43c73 241 Gene3D G3DSA:3.40.50.720 6 239 2.5E-69 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS00285 91e3a2c687d084f02b1f437396e43c73 241 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 238 2.4E-53 T 21-04-2016 RAF_RS00285 91e3a2c687d084f02b1f437396e43c73 241 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 135 163 - T 21-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RAF_RS00285 91e3a2c687d084f02b1f437396e43c73 241 SUPERFAMILY SSF51735 6 240 5.9E-66 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS00285 91e3a2c687d084f02b1f437396e43c73 241 PANTHER PTHR24322 148 180 6.5E-47 T 21-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RAF_RS00285 91e3a2c687d084f02b1f437396e43c73 241 PANTHER PTHR24322 7 132 6.5E-47 T 21-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RAF_RS00285 91e3a2c687d084f02b1f437396e43c73 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 4.1E-15 T 21-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RAF_RS00285 91e3a2c687d084f02b1f437396e43c73 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 4.1E-15 T 21-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RAF_RS00285 91e3a2c687d084f02b1f437396e43c73 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 4.1E-15 T 21-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RAF_RS00285 91e3a2c687d084f02b1f437396e43c73 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 3.7E-38 T 21-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RAF_RS00285 91e3a2c687d084f02b1f437396e43c73 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 3.7E-38 T 21-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RAF_RS00285 91e3a2c687d084f02b1f437396e43c73 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 202 222 3.7E-38 T 21-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RAF_RS00285 91e3a2c687d084f02b1f437396e43c73 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 3.7E-38 T 21-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RAF_RS00285 91e3a2c687d084f02b1f437396e43c73 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 138 3.7E-38 T 21-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RAF_RS00285 91e3a2c687d084f02b1f437396e43c73 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 3.7E-38 T 21-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RAF_RS00285 91e3a2c687d084f02b1f437396e43c73 241 PANTHER PTHR24322:SF328 148 180 6.5E-47 T 21-04-2016 RAF_RS00285 91e3a2c687d084f02b1f437396e43c73 241 PANTHER PTHR24322:SF328 7 132 6.5E-47 T 21-04-2016 RAF_RS00305 73328c5f12ad447fc6e592e0afc773e1 857 Gene3D G3DSA:1.10.8.60 775 855 2.8E-31 T 21-04-2016 RAF_RS00305 73328c5f12ad447fc6e592e0afc773e1 857 SMART SM01086 765 854 3.7E-36 T 21-04-2016 IPR019489 Clp ATPase, C-terminal RAF_RS00305 73328c5f12ad447fc6e592e0afc773e1 857 SUPERFAMILY SSF52540 158 536 1.01E-98 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00305 73328c5f12ad447fc6e592e0afc773e1 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 674 692 1.32E-41 T 21-04-2016 IPR001270 ClpA/B family GO:0005524 RAF_RS00305 73328c5f12ad447fc6e592e0afc773e1 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 707 721 1.32E-41 T 21-04-2016 IPR001270 ClpA/B family GO:0005524 RAF_RS00305 73328c5f12ad447fc6e592e0afc773e1 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 600 618 1.32E-41 T 21-04-2016 IPR001270 ClpA/B family GO:0005524 RAF_RS00305 73328c5f12ad447fc6e592e0afc773e1 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 645 663 1.32E-41 T 21-04-2016 IPR001270 ClpA/B family GO:0005524 RAF_RS00305 73328c5f12ad447fc6e592e0afc773e1 857 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 95 145 1.0E-6 T 21-04-2016 IPR004176 Clp, N-terminal GO:0019538 RAF_RS00305 73328c5f12ad447fc6e592e0afc773e1 857 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 18 68 3.3E-9 T 21-04-2016 IPR004176 Clp, N-terminal GO:0019538 RAF_RS00305 73328c5f12ad447fc6e592e0afc773e1 857 SUPERFAMILY SSF81923 4 157 7.95E-33 T 21-04-2016 IPR004176 Clp, N-terminal GO:0019538 RAF_RS00305 73328c5f12ad447fc6e592e0afc773e1 857 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 295 307 - T 21-04-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 RAF_RS00305 73328c5f12ad447fc6e592e0afc773e1 857 Gene3D G3DSA:1.10.1780.10 1 149 7.1E-38 T 21-04-2016 IPR004176 Clp, N-terminal GO:0019538 RAF_RS00305 73328c5f12ad447fc6e592e0afc773e1 857 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 204 321 7.2E-15 T 21-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RAF_RS00305 73328c5f12ad447fc6e592e0afc773e1 857 SUPERFAMILY SSF52540 545 851 5.95E-78 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00305 73328c5f12ad447fc6e592e0afc773e1 857 SMART SM00382 596 739 1.5E-11 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS00305 73328c5f12ad447fc6e592e0afc773e1 857 SMART SM00382 199 345 3.5E-9 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS00305 73328c5f12ad447fc6e592e0afc773e1 857 Pfam PF07724 AAA domain (Cdc48 subfamily) 595 759 1.6E-53 T 21-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RAF_RS00305 73328c5f12ad447fc6e592e0afc773e1 857 Gene3D G3DSA:3.40.50.300 551 774 1.8E-53 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00305 73328c5f12ad447fc6e592e0afc773e1 857 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 630 648 - T 21-04-2016 IPR028299 ClpA/B, conserved site 2 RAF_RS00305 73328c5f12ad447fc6e592e0afc773e1 857 Gene3D G3DSA:3.40.50.300 160 343 4.3E-50 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00305 73328c5f12ad447fc6e592e0afc773e1 857 Gene3D G3DSA:1.10.8.60 344 428 6.6E-37 T 21-04-2016 RAF_RS00305 73328c5f12ad447fc6e592e0afc773e1 857 PANTHER PTHR11638:SF18 1 857 0.0 T 21-04-2016 RAF_RS00305 73328c5f12ad447fc6e592e0afc773e1 857 PANTHER PTHR11638 1 857 0.0 T 21-04-2016 RAF_RS00305 73328c5f12ad447fc6e592e0afc773e1 857 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 765 845 5.5E-27 T 21-04-2016 IPR019489 Clp ATPase, C-terminal RAF_RS00305 73328c5f12ad447fc6e592e0afc773e1 857 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 854 0.0 T 21-04-2016 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0016485 RAF_RS06985 be84ca0b56e8f84dc90bd579c6b01f1b 346 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 134 150 - T 21-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RAF_RS06985 be84ca0b56e8f84dc90bd579c6b01f1b 346 PANTHER PTHR21091 15 340 4.0E-112 T 21-04-2016 RAF_RS06985 be84ca0b56e8f84dc90bd579c6b01f1b 346 PANTHER PTHR21091:SF2 15 340 4.0E-112 T 21-04-2016 RAF_RS06985 be84ca0b56e8f84dc90bd579c6b01f1b 346 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 7 335 7.7E-129 T 21-04-2016 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RAF_RS06985 be84ca0b56e8f84dc90bd579c6b01f1b 346 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 16 25 - T 21-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RAF_RS06985 be84ca0b56e8f84dc90bd579c6b01f1b 346 SUPERFAMILY SSF51726 13 339 2.79E-96 T 21-04-2016 RAF_RS06985 be84ca0b56e8f84dc90bd579c6b01f1b 346 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 13 335 1.0E-107 T 21-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RAF_RS06985 be84ca0b56e8f84dc90bd579c6b01f1b 346 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 1 338 45.789 T 21-04-2016 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 RAF_RS06985 be84ca0b56e8f84dc90bd579c6b01f1b 346 Gene3D G3DSA:3.20.20.210 13 339 2.7E-116 T 21-04-2016 RAF_RS04095 899d3b1415b9fb1722e685616f4801cb 191 Gene3D G3DSA:3.40.50.1950 6 188 2.7E-76 T 21-04-2016 IPR003382 Flavoprotein GO:0003824 RAF_RS04095 899d3b1415b9fb1722e685616f4801cb 191 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 5 188 36.346 T 21-04-2016 IPR004507 Flavin prenyltransferase UbiX/Pad1 RAF_RS04095 899d3b1415b9fb1722e685616f4801cb 191 PANTHER PTHR30108 1 191 2.3E-81 T 21-04-2016 RAF_RS04095 899d3b1415b9fb1722e685616f4801cb 191 SUPERFAMILY SSF52507 6 188 3.27E-60 T 21-04-2016 IPR003382 Flavoprotein GO:0003824 RAF_RS04095 899d3b1415b9fb1722e685616f4801cb 191 Pfam PF02441 Flavoprotein 6 129 2.4E-27 T 21-04-2016 IPR003382 Flavoprotein GO:0003824 RAF_RS04095 899d3b1415b9fb1722e685616f4801cb 191 PANTHER PTHR30108:SF2 1 191 2.3E-81 T 21-04-2016 RAF_RS04095 899d3b1415b9fb1722e685616f4801cb 191 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 6 186 2.3E-75 T 21-04-2016 IPR004507 Flavin prenyltransferase UbiX/Pad1 RAF_RS05080 43f62183d3d53c50b27b92df28a2bb4e 109 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 41 104 2.5E-27 T 21-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05080 43f62183d3d53c50b27b92df28a2bb4e 109 Pfam PF00467 KOW motif 8 38 1.4E-8 T 21-04-2016 IPR005824 KOW RAF_RS05080 43f62183d3d53c50b27b92df28a2bb4e 109 SMART SM00739 5 32 1.9E-6 T 21-04-2016 IPR005824 KOW RAF_RS05080 43f62183d3d53c50b27b92df28a2bb4e 109 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 3 104 1.6E-40 T 21-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05080 43f62183d3d53c50b27b92df28a2bb4e 109 SUPERFAMILY SSF50104 3 103 2.19E-35 T 21-04-2016 IPR008991 Translation protein SH3-like domain RAF_RS05080 43f62183d3d53c50b27b92df28a2bb4e 109 Gene3D G3DSA:2.30.30.30 3 92 8.6E-27 T 21-04-2016 IPR014722 Ribosomal protein L2 domain 2 RAF_RS05080 43f62183d3d53c50b27b92df28a2bb4e 109 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 4 98 21.842 T 21-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05080 43f62183d3d53c50b27b92df28a2bb4e 109 ProSitePatterns PS01108 Ribosomal protein L24 signature. 9 26 - T 21-04-2016 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05080 43f62183d3d53c50b27b92df28a2bb4e 109 PANTHER PTHR12903 3 104 5.1E-48 T 21-04-2016 RAF_RS04390 06eede1199a88639bc4677ab984e1c13 639 PANTHER PTHR30562 4 635 1.5E-193 T 21-04-2016 RAF_RS04390 06eede1199a88639bc4677ab984e1c13 639 SUPERFAMILY SSF47781 538 637 9.53E-21 T 21-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 RAF_RS04390 06eede1199a88639bc4677ab984e1c13 639 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 384 569 3.7E-38 T 21-04-2016 IPR001162 UvrC family homology region RAF_RS04390 06eede1199a88639bc4677ab984e1c13 639 SUPERFAMILY SSF46600 193 244 5.89E-12 T 21-04-2016 IPR001943 UVR domain GO:0005515 RAF_RS04390 06eede1199a88639bc4677ab984e1c13 639 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 12 432 1.8E-117 T 21-04-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 RAF_RS04390 06eede1199a88639bc4677ab984e1c13 639 SUPERFAMILY SSF82771 21 102 6.02E-20 T 21-04-2016 IPR000305 GIY-YIG nuclease superfamily RAF_RS04390 06eede1199a88639bc4677ab984e1c13 639 Hamap MF_00203 UvrABC system protein C [uvrC]. 8 634 27.576 T 21-04-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 RAF_RS04390 06eede1199a88639bc4677ab984e1c13 639 Pfam PF02151 UvrB/uvrC motif 207 240 2.3E-9 T 21-04-2016 IPR001943 UVR domain GO:0005515 RAF_RS04390 06eede1199a88639bc4677ab984e1c13 639 Gene3D G3DSA:4.10.860.10 185 244 1.2E-15 T 21-04-2016 IPR001943 UVR domain GO:0005515 RAF_RS04390 06eede1199a88639bc4677ab984e1c13 639 Gene3D G3DSA:3.40.1440.10 22 98 5.6E-9 T 21-04-2016 IPR027299 GIY-YIG domain RAF_RS04390 06eede1199a88639bc4677ab984e1c13 639 PANTHER PTHR30562:SF1 4 635 1.5E-193 T 21-04-2016 RAF_RS04390 06eede1199a88639bc4677ab984e1c13 639 Pfam PF01541 GIY-YIG catalytic domain 22 96 1.9E-11 T 21-04-2016 IPR000305 GIY-YIG nuclease superfamily RAF_RS04390 06eede1199a88639bc4677ab984e1c13 639 Gene3D G3DSA:1.10.150.20 583 636 7.8E-20 T 21-04-2016 RAF_RS04390 06eede1199a88639bc4677ab984e1c13 639 SMART SM00465 21 101 1.2E-23 T 21-04-2016 IPR000305 GIY-YIG nuclease superfamily RAF_RS01295 62f365cd3cd249cc6d3710e56a25c02d 796 Pfam PF00912 Transglycosylase 52 198 1.6E-42 T 21-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 RAF_RS01295 62f365cd3cd249cc6d3710e56a25c02d 796 TIGRFAM TIGR02073 PBP_1c: penicillin-binding protein 1C 26 794 6.8E-204 T 21-04-2016 IPR011815 Penicillin-binding protein 1C GO:0008955|GO:0009252 KEGG: 00230+2.4.2.-|KEGG: 00514+2.4.2.-|UniPathway: UPA00219 RAF_RS01295 62f365cd3cd249cc6d3710e56a25c02d 796 Gene3D G3DSA:3.40.710.10 507 656 2.1E-70 T 21-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RAF_RS01295 62f365cd3cd249cc6d3710e56a25c02d 796 Gene3D G3DSA:3.40.710.10 260 475 2.1E-70 T 21-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RAF_RS01295 62f365cd3cd249cc6d3710e56a25c02d 796 SUPERFAMILY SSF56601 506 668 5.39E-78 T 21-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RAF_RS01295 62f365cd3cd249cc6d3710e56a25c02d 796 SUPERFAMILY SSF56601 256 472 5.39E-78 T 21-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RAF_RS01295 62f365cd3cd249cc6d3710e56a25c02d 796 PANTHER PTHR32282 7 476 1.3E-126 T 21-04-2016 RAF_RS01295 62f365cd3cd249cc6d3710e56a25c02d 796 PANTHER PTHR32282 506 711 1.3E-126 T 21-04-2016 RAF_RS01295 62f365cd3cd249cc6d3710e56a25c02d 796 Pfam PF06832 Penicillin-Binding Protein C-terminus Family 714 792 4.6E-7 T 21-04-2016 IPR009647 Penicillin-binding, C-terminal KEGG: 00230+2.4.2.-|KEGG: 00514+2.4.2.-|UniPathway: UPA00219 RAF_RS01295 62f365cd3cd249cc6d3710e56a25c02d 796 Gene3D G3DSA:1.10.3810.10 51 197 3.0E-40 T 21-04-2016 RAF_RS01295 62f365cd3cd249cc6d3710e56a25c02d 796 SUPERFAMILY SSF53955 31 199 3.37E-49 T 21-04-2016 IPR023346 Lysozyme-like domain RAF_RS01295 62f365cd3cd249cc6d3710e56a25c02d 796 Pfam PF00905 Penicillin binding protein transpeptidase domain 295 459 8.4E-11 T 21-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RAF_RS01295 62f365cd3cd249cc6d3710e56a25c02d 796 PANTHER PTHR32282:SF0 7 476 1.3E-126 T 21-04-2016 RAF_RS01295 62f365cd3cd249cc6d3710e56a25c02d 796 PANTHER PTHR32282:SF0 506 711 1.3E-126 T 21-04-2016 RAF_RS03205 b85c412765a19913b2571b5f1a660640 653 Pfam PF13361 UvrD-like helicase C-terminal domain 279 613 2.9E-67 T 21-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RAF_RS03205 b85c412765a19913b2571b5f1a660640 653 PANTHER PTHR11070 1 648 5.3E-192 T 21-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RAF_RS03205 b85c412765a19913b2571b5f1a660640 653 TIGRFAM TIGR01073 pcrA: ATP-dependent DNA helicase PcrA 6 643 1.2E-290 T 21-04-2016 IPR005751 ATP-dependent DNA helicase PcrA GO:0004003|GO:0005737|GO:0006268 RAF_RS03205 b85c412765a19913b2571b5f1a660640 653 Pfam PF00580 UvrD/REP helicase N-terminal domain 10 273 4.4E-75 T 21-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 RAF_RS03205 b85c412765a19913b2571b5f1a660640 653 SUPERFAMILY SSF52540 4 636 2.59E-165 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS03205 b85c412765a19913b2571b5f1a660640 653 Gene3D G3DSA:1.10.486.10 391 535 8.7E-41 T 21-04-2016 RAF_RS03205 b85c412765a19913b2571b5f1a660640 653 Gene3D G3DSA:3.40.50.300 4 108 1.4E-66 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS03205 b85c412765a19913b2571b5f1a660640 653 Gene3D G3DSA:3.40.50.300 193 287 1.4E-66 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS03205 b85c412765a19913b2571b5f1a660640 653 Gene3D G3DSA:1.10.10.160 116 192 2.0E-18 T 21-04-2016 IPR013986 DExx box DNA helicase domain RAF_RS03205 b85c412765a19913b2571b5f1a660640 653 Gene3D G3DSA:3.40.50.300 288 390 1.1E-66 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS03205 b85c412765a19913b2571b5f1a660640 653 Gene3D G3DSA:3.40.50.300 547 637 1.1E-66 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS03205 b85c412765a19913b2571b5f1a660640 653 PANTHER PTHR11070:SF7 1 648 5.3E-192 T 21-04-2016 RAF_RS02590 50c113ff9b213ecc0a69362d3109b2b8 522 Gene3D G3DSA:1.10.730.10 278 364 1.8E-5 T 21-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS02590 50c113ff9b213ecc0a69362d3109b2b8 522 SUPERFAMILY SSF52374 13 330 4.56E-66 T 21-04-2016 RAF_RS02590 50c113ff9b213ecc0a69362d3109b2b8 522 TIGRFAM TIGR00467 lysS_arch: lysine--tRNA ligase 38 518 1.5E-64 T 21-04-2016 IPR002904 Lysine-tRNA ligase GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 RAF_RS02590 50c113ff9b213ecc0a69362d3109b2b8 522 PANTHER PTHR37940 3 522 2.3E-149 T 21-04-2016 RAF_RS02590 50c113ff9b213ecc0a69362d3109b2b8 522 Gene3D G3DSA:1.10.10.350 428 519 2.4E-25 T 21-04-2016 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RAF_RS02590 50c113ff9b213ecc0a69362d3109b2b8 522 Hamap MF_00177 Lysine--tRNA ligase [lysS]. 12 522 30.993 T 21-04-2016 IPR002904 Lysine-tRNA ligase GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 RAF_RS02590 50c113ff9b213ecc0a69362d3109b2b8 522 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 44 53 - T 21-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS02590 50c113ff9b213ecc0a69362d3109b2b8 522 Pfam PF01921 tRNA synthetases class I (K) 13 366 4.5E-132 T 21-04-2016 RAF_RS02590 50c113ff9b213ecc0a69362d3109b2b8 522 SUPERFAMILY SSF48163 329 519 4.19E-36 T 21-04-2016 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RAF_RS02590 50c113ff9b213ecc0a69362d3109b2b8 522 Gene3D G3DSA:3.40.50.620 14 194 1.6E-42 T 21-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS02590 50c113ff9b213ecc0a69362d3109b2b8 522 Gene3D G3DSA:3.40.50.620 231 277 1.6E-42 T 21-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS03165 4436ff853667c17a04f1e7c572c41a4f 290 SUPERFAMILY SSF53474 22 280 3.21E-40 T 21-04-2016 IPR029058 Alpha/Beta hydrolase fold RAF_RS03165 4436ff853667c17a04f1e7c572c41a4f 290 Pfam PF00561 alpha/beta hydrolase fold 37 137 2.5E-15 T 21-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RAF_RS03165 4436ff853667c17a04f1e7c572c41a4f 290 PANTHER PTHR10992 20 288 1.3E-32 T 21-04-2016 RAF_RS03165 4436ff853667c17a04f1e7c572c41a4f 290 Gene3D G3DSA:3.40.50.1820 21 287 7.4E-54 T 21-04-2016 IPR029058 Alpha/Beta hydrolase fold RAF_RS00590 4963f07c3efa0b7f8614c615d4978a64 295 Pfam PF00318 Ribosomal protein S2 12 228 2.8E-90 T 21-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00590 4963f07c3efa0b7f8614c615d4978a64 295 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 9 20 - T 21-04-2016 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 RAF_RS00590 4963f07c3efa0b7f8614c615d4978a64 295 SUPERFAMILY SSF52313 9 236 5.76E-90 T 21-04-2016 IPR023591 Ribosomal protein S2, flavodoxin-like domain RAF_RS00590 4963f07c3efa0b7f8614c615d4978a64 295 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 162 186 - T 21-04-2016 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 RAF_RS00590 4963f07c3efa0b7f8614c615d4978a64 295 Gene3D G3DSA:1.10.287.610 103 156 7.1E-17 T 21-04-2016 RAF_RS00590 4963f07c3efa0b7f8614c615d4978a64 295 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 7 230 4.3E-102 T 21-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 RAF_RS00590 4963f07c3efa0b7f8614c615d4978a64 295 Gene3D G3DSA:3.40.50.10490 26 102 8.6E-65 T 21-04-2016 RAF_RS00590 4963f07c3efa0b7f8614c615d4978a64 295 Gene3D G3DSA:3.40.50.10490 162 246 8.6E-65 T 21-04-2016 RAF_RS00590 4963f07c3efa0b7f8614c615d4978a64 295 PRINTS PR00395 Ribosomal protein S2 signature 162 179 1.9E-39 T 21-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00590 4963f07c3efa0b7f8614c615d4978a64 295 PRINTS PR00395 Ribosomal protein S2 signature 90 107 1.9E-39 T 21-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00590 4963f07c3efa0b7f8614c615d4978a64 295 PRINTS PR00395 Ribosomal protein S2 signature 9 27 1.9E-39 T 21-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00590 4963f07c3efa0b7f8614c615d4978a64 295 PRINTS PR00395 Ribosomal protein S2 signature 200 214 1.9E-39 T 21-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00590 4963f07c3efa0b7f8614c615d4978a64 295 PRINTS PR00395 Ribosomal protein S2 signature 40 49 1.9E-39 T 21-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00590 4963f07c3efa0b7f8614c615d4978a64 295 PRINTS PR00395 Ribosomal protein S2 signature 179 190 1.9E-39 T 21-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00590 4963f07c3efa0b7f8614c615d4978a64 295 PANTHER PTHR12534 7 273 1.7E-108 T 21-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 RAF_RS00590 4963f07c3efa0b7f8614c615d4978a64 295 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 5 229 38.726 T 21-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 RAF_RS06265 7754eafaaaa679e4878e79f0cbe8e724 510 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 372 2.5E-76 T 21-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RAF_RS06265 7754eafaaaa679e4878e79f0cbe8e724 510 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 3 509 3.5E-264 T 21-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RAF_RS06265 7754eafaaaa679e4878e79f0cbe8e724 510 SUPERFAMILY SSF50615 10 93 1.28E-25 T 21-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RAF_RS06265 7754eafaaaa679e4878e79f0cbe8e724 510 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 26 91 5.0E-16 T 21-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RAF_RS06265 7754eafaaaa679e4878e79f0cbe8e724 510 SUPERFAMILY SSF52540 96 378 7.31E-103 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06265 7754eafaaaa679e4878e79f0cbe8e724 510 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 509 52.317 T 21-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RAF_RS06265 7754eafaaaa679e4878e79f0cbe8e724 510 Gene3D G3DSA:3.40.50.300 95 379 1.6E-125 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06265 7754eafaaaa679e4878e79f0cbe8e724 510 Gene3D G3DSA:2.40.30.20 1 92 9.6E-34 T 21-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RAF_RS06265 7754eafaaaa679e4878e79f0cbe8e724 510 PIRSF PIRSF039088 1 510 9.2E-276 T 21-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RAF_RS06265 7754eafaaaa679e4878e79f0cbe8e724 510 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 379 504 2.9E-49 T 21-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RAF_RS06265 7754eafaaaa679e4878e79f0cbe8e724 510 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 363 372 - T 21-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RAF_RS06265 7754eafaaaa679e4878e79f0cbe8e724 510 SUPERFAMILY SSF47917 380 508 2.25E-45 T 21-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RAF_RS06265 7754eafaaaa679e4878e79f0cbe8e724 510 Gene3D G3DSA:1.20.150.20 380 509 5.8E-53 T 21-04-2016 RAF_RS06265 7754eafaaaa679e4878e79f0cbe8e724 510 PANTHER PTHR15184:SF3 1 493 0.0 T 21-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RAF_RS06265 7754eafaaaa679e4878e79f0cbe8e724 510 PANTHER PTHR15184 1 493 0.0 T 21-04-2016 RAF_RS04965 1fb7ea7c5710f1e790271d4fcb0750a2 80 Gene3D G3DSA:1.20.1250.20 1 69 5.4E-5 T 21-04-2016 RAF_RS04965 1fb7ea7c5710f1e790271d4fcb0750a2 80 SUPERFAMILY SSF103473 1 73 4.84E-8 T 21-04-2016 IPR020846 Major facilitator superfamily domain RAF_RS04965 1fb7ea7c5710f1e790271d4fcb0750a2 80 PANTHER PTHR23508 1 68 2.5E-12 T 21-04-2016 RAF_RS04965 1fb7ea7c5710f1e790271d4fcb0750a2 80 PANTHER PTHR23508:SF1 1 68 2.5E-12 T 21-04-2016 RAF_RS01810 be260a7b96ed53e02a4a05b53126ac75 609 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 4 606 1.6E-289 T 21-04-2016 IPR006298 GTP-binding protein TypA GO:0005525 RAF_RS01810 be260a7b96ed53e02a4a05b53126ac75 609 Pfam PF03144 Elongation factor Tu domain 2 225 296 3.7E-13 T 21-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RAF_RS01810 be260a7b96ed53e02a4a05b53126ac75 609 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 3 144 4.6E-24 T 21-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RAF_RS01810 be260a7b96ed53e02a4a05b53126ac75 609 Gene3D G3DSA:3.30.70.870 310 407 4.5E-32 T 21-04-2016 RAF_RS01810 be260a7b96ed53e02a4a05b53126ac75 609 SUPERFAMILY SSF50447 151 173 3.95E-30 T 21-04-2016 IPR009000 Translation protein, beta-barrel domain RAF_RS01810 be260a7b96ed53e02a4a05b53126ac75 609 SUPERFAMILY SSF50447 206 306 3.95E-30 T 21-04-2016 IPR009000 Translation protein, beta-barrel domain RAF_RS01810 be260a7b96ed53e02a4a05b53126ac75 609 PANTHER PTHR23115:SF14 190 600 8.6E-273 T 21-04-2016 IPR006298 GTP-binding protein TypA GO:0005525 RAF_RS01810 be260a7b96ed53e02a4a05b53126ac75 609 PANTHER PTHR23115:SF14 4 169 8.6E-273 T 21-04-2016 IPR006298 GTP-binding protein TypA GO:0005525 RAF_RS01810 be260a7b96ed53e02a4a05b53126ac75 609 SUPERFAMILY SSF54980 406 520 4.7E-24 T 21-04-2016 IPR009022 Elongation factor G, III-V domain RAF_RS01810 be260a7b96ed53e02a4a05b53126ac75 609 Pfam PF00009 Elongation factor Tu GTP binding domain 3 201 1.3E-55 T 21-04-2016 RAF_RS01810 be260a7b96ed53e02a4a05b53126ac75 609 Gene3D G3DSA:3.30.70.240 408 489 3.0E-28 T 21-04-2016 IPR000640 Translation elongation factor EFG, V domain RAF_RS01810 be260a7b96ed53e02a4a05b53126ac75 609 PANTHER PTHR23115 190 600 8.6E-273 T 21-04-2016 RAF_RS01810 be260a7b96ed53e02a4a05b53126ac75 609 PANTHER PTHR23115 4 169 8.6E-273 T 21-04-2016 RAF_RS01810 be260a7b96ed53e02a4a05b53126ac75 609 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 43 58 - T 21-04-2016 IPR031157 Tr-type G domain, conserved site RAF_RS01810 be260a7b96ed53e02a4a05b53126ac75 609 Gene3D G3DSA:2.40.30.10 212 309 1.3E-25 T 21-04-2016 RAF_RS01810 be260a7b96ed53e02a4a05b53126ac75 609 Gene3D G3DSA:3.40.50.300 2 211 2.1E-65 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01810 be260a7b96ed53e02a4a05b53126ac75 609 Gene3D G3DSA:2.40.50.250 490 583 1.1E-40 T 21-04-2016 RAF_RS01810 be260a7b96ed53e02a4a05b53126ac75 609 SUPERFAMILY SSF52540 3 225 7.95E-55 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01810 be260a7b96ed53e02a4a05b53126ac75 609 Pfam PF00679 Elongation factor G C-terminus 405 487 5.4E-19 T 21-04-2016 IPR000640 Translation elongation factor EFG, V domain RAF_RS01810 be260a7b96ed53e02a4a05b53126ac75 609 SUPERFAMILY SSF54980 309 394 3.49E-12 T 21-04-2016 IPR009022 Elongation factor G, III-V domain RAF_RS01810 be260a7b96ed53e02a4a05b53126ac75 609 PRINTS PR00315 GTP-binding elongation factor signature 50 58 4.0E-15 T 21-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAF_RS01810 be260a7b96ed53e02a4a05b53126ac75 609 PRINTS PR00315 GTP-binding elongation factor signature 70 80 4.0E-15 T 21-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAF_RS01810 be260a7b96ed53e02a4a05b53126ac75 609 PRINTS PR00315 GTP-binding elongation factor signature 6 19 4.0E-15 T 21-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAF_RS01810 be260a7b96ed53e02a4a05b53126ac75 609 PRINTS PR00315 GTP-binding elongation factor signature 122 131 4.0E-15 T 21-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAF_RS01810 be260a7b96ed53e02a4a05b53126ac75 609 PRINTS PR00315 GTP-binding elongation factor signature 86 97 4.0E-15 T 21-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAF_RS05665 ee8cf97ffbe9559e117505304569ffe5 240 PANTHER PTHR23427:SF2 5 238 6.6E-33 T 21-04-2016 RAF_RS05665 ee8cf97ffbe9559e117505304569ffe5 240 Pfam PF02104 SURF1 family 9 210 4.5E-33 T 21-04-2016 IPR002994 Surfeit locus 1/Shy1 GO:0016020 RAF_RS05665 ee8cf97ffbe9559e117505304569ffe5 240 PANTHER PTHR23427 5 238 6.6E-33 T 21-04-2016 RAF_RS03525 f328d70fb4b7171349741a88518759ea 412 Gene3D G3DSA:3.30.559.10 181 411 6.2E-92 T 21-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain RAF_RS03525 f328d70fb4b7171349741a88518759ea 412 SUPERFAMILY SSF47005 125 169 1.09E-10 T 21-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RAF_RS03525 f328d70fb4b7171349741a88518759ea 412 TIGRFAM TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 4 412 2.2E-173 T 21-04-2016 IPR006257 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex GO:0004742|GO:0006090|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 RAF_RS03525 f328d70fb4b7171349741a88518759ea 412 PANTHER PTHR23151 5 412 6.8E-214 T 21-04-2016 RAF_RS03525 f328d70fb4b7171349741a88518759ea 412 Pfam PF00364 Biotin-requiring enzyme 5 77 1.3E-18 T 21-04-2016 IPR000089 Biotin/lipoyl attachment RAF_RS03525 f328d70fb4b7171349741a88518759ea 412 Gene3D G3DSA:2.40.50.100 1 92 1.2E-33 T 21-04-2016 RAF_RS03525 f328d70fb4b7171349741a88518759ea 412 Pfam PF02817 e3 binding domain 131 166 3.7E-13 T 21-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RAF_RS03525 f328d70fb4b7171349741a88518759ea 412 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 21-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site RAF_RS03525 f328d70fb4b7171349741a88518759ea 412 SUPERFAMILY SSF51230 1 94 8.9E-28 T 21-04-2016 IPR011053 Single hybrid motif RAF_RS03525 f328d70fb4b7171349741a88518759ea 412 Gene3D G3DSA:4.10.320.10 128 172 1.8E-16 T 21-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RAF_RS03525 f328d70fb4b7171349741a88518759ea 412 PANTHER PTHR23151:SF56 5 412 6.8E-214 T 21-04-2016 RAF_RS03525 f328d70fb4b7171349741a88518759ea 412 SUPERFAMILY SSF52777 184 411 3.56E-86 T 21-04-2016 RAF_RS03525 f328d70fb4b7171349741a88518759ea 412 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 184 411 1.5E-86 T 21-04-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 RAF_RS02995 dc4954f9d1ef5b50e3ab9ec1b5a52456 349 SUPERFAMILY SSF46589 15 99 1.99E-16 T 21-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 RAF_RS02995 dc4954f9d1ef5b50e3ab9ec1b5a52456 349 PANTHER PTHR11538 92 331 1.6E-96 T 21-04-2016 RAF_RS02995 dc4954f9d1ef5b50e3ab9ec1b5a52456 349 Gene3D G3DSA:3.30.930.10 12 334 1.9E-125 T 21-04-2016 RAF_RS02995 dc4954f9d1ef5b50e3ab9ec1b5a52456 349 SUPERFAMILY SSF55681 91 334 1.36E-78 T 21-04-2016 RAF_RS02995 dc4954f9d1ef5b50e3ab9ec1b5a52456 349 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 8 333 46.412 T 21-04-2016 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 RAF_RS02995 dc4954f9d1ef5b50e3ab9ec1b5a52456 349 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 19 87 3.8E-18 T 21-04-2016 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RAF_RS02995 dc4954f9d1ef5b50e3ab9ec1b5a52456 349 Pfam PF01409 tRNA synthetases class II core domain (F) 91 332 8.5E-107 T 21-04-2016 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 RAF_RS02995 dc4954f9d1ef5b50e3ab9ec1b5a52456 349 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 41 333 2.4E-104 T 21-04-2016 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RAF_RS02995 dc4954f9d1ef5b50e3ab9ec1b5a52456 349 PANTHER PTHR11538:SF40 92 331 1.6E-96 T 21-04-2016 RAF_RS01550 6f76a81b02c5ccf857c691c12c5440aa 37 Pfam PF00005 ABC transporter 2 33 1.6E-9 T 21-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAF_RS01550 6f76a81b02c5ccf857c691c12c5440aa 37 SUPERFAMILY SSF52540 1 33 1.98E-9 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01550 6f76a81b02c5ccf857c691c12c5440aa 37 Gene3D G3DSA:3.40.50.300 2 32 4.0E-10 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02125 ac1366fad64aa25256378d4e567a2df2 188 PANTHER PTHR21320 3 181 5.6E-67 T 21-04-2016 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 RAF_RS02125 ac1366fad64aa25256378d4e567a2df2 188 Pfam PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 27 174 1.5E-55 T 21-04-2016 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 RAF_RS02125 ac1366fad64aa25256378d4e567a2df2 188 Gene3D G3DSA:2.60.370.10 53 180 1.5E-51 T 21-04-2016 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain RAF_RS02125 ac1366fad64aa25256378d4e567a2df2 188 PANTHER PTHR21320:SF3 3 181 5.6E-67 T 21-04-2016 RAF_RS02125 ac1366fad64aa25256378d4e567a2df2 188 SUPERFAMILY SSF110111 53 176 1.24E-47 T 21-04-2016 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain RAF_RS02125 ac1366fad64aa25256378d4e567a2df2 188 PIRSF PIRSF005413 1 188 6.1E-72 T 21-04-2016 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 RAF_RS02125 ac1366fad64aa25256378d4e567a2df2 188 Hamap MF_00155 Cytochrome c oxidase assembly protein CtaG [ctaG]. 1 180 38.834 T 21-04-2016 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 RAF_RS01700 72731979379414a1412606ed3c48e04e 254 Pfam PF08009 CDP-alcohol phosphatidyltransferase 2 207 243 4.8E-8 T 21-04-2016 IPR012616 CDP-alcohol phosphatidyltransferase, C-terminal RAF_RS01700 72731979379414a1412606ed3c48e04e 254 PANTHER PTHR15362:SF2 15 148 7.7E-26 T 21-04-2016 RAF_RS01700 72731979379414a1412606ed3c48e04e 254 PANTHER PTHR15362 15 148 7.7E-26 T 21-04-2016 RAF_RS01700 72731979379414a1412606ed3c48e04e 254 Pfam PF01066 CDP-alcohol phosphatidyltransferase 19 82 6.3E-16 T 21-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RAF_RS01700 72731979379414a1412606ed3c48e04e 254 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 60 82 - T 21-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RAF_RS01605 c994156d2729feaf1aa7f6b1927ec468 662 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 18 656 0.0 T 21-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RAF_RS01605 c994156d2729feaf1aa7f6b1927ec468 662 PRINTS PR00418 DNA topoisomerase II family signature 49 64 8.8E-63 T 21-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS01605 c994156d2729feaf1aa7f6b1927ec468 662 PRINTS PR00418 DNA topoisomerase II family signature 525 542 8.8E-63 T 21-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS01605 c994156d2729feaf1aa7f6b1927ec468 662 PRINTS PR00418 DNA topoisomerase II family signature 441 455 8.8E-63 T 21-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS01605 c994156d2729feaf1aa7f6b1927ec468 662 PRINTS PR00418 DNA topoisomerase II family signature 589 605 8.8E-63 T 21-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS01605 c994156d2729feaf1aa7f6b1927ec468 662 PRINTS PR00418 DNA topoisomerase II family signature 84 97 8.8E-63 T 21-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS01605 c994156d2729feaf1aa7f6b1927ec468 662 PRINTS PR00418 DNA topoisomerase II family signature 507 523 8.8E-63 T 21-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS01605 c994156d2729feaf1aa7f6b1927ec468 662 PRINTS PR00418 DNA topoisomerase II family signature 292 305 8.8E-63 T 21-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS01605 c994156d2729feaf1aa7f6b1927ec468 662 PRINTS PR00418 DNA topoisomerase II family signature 128 142 8.8E-63 T 21-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS01605 c994156d2729feaf1aa7f6b1927ec468 662 PRINTS PR00418 DNA topoisomerase II family signature 545 557 8.8E-63 T 21-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS01605 c994156d2729feaf1aa7f6b1927ec468 662 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 47 190 3.9E-19 T 21-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RAF_RS01605 c994156d2729feaf1aa7f6b1927ec468 662 SUPERFAMILY SSF56719 415 647 1.8E-73 T 21-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 RAF_RS01605 c994156d2729feaf1aa7f6b1927ec468 662 PANTHER PTHR10169 1 637 2.0E-197 T 21-04-2016 RAF_RS01605 c994156d2729feaf1aa7f6b1927ec468 662 ProSitePatterns PS00177 DNA topoisomerase II signature. 443 451 - T 21-04-2016 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS01605 c994156d2729feaf1aa7f6b1927ec468 662 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 17 654 41.648 T 21-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RAF_RS01605 c994156d2729feaf1aa7f6b1927ec468 662 PANTHER PTHR10169:SF45 1 637 2.0E-197 T 21-04-2016 RAF_RS01605 c994156d2729feaf1aa7f6b1927ec468 662 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 585 645 1.8E-25 T 21-04-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS01605 c994156d2729feaf1aa7f6b1927ec468 662 SMART SM00433 49 650 1.4E-297 T 21-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS01605 c994156d2729feaf1aa7f6b1927ec468 662 PRINTS PR01159 DNA gyrase subunit B signature 610 622 1.1E-12 T 21-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS01605 c994156d2729feaf1aa7f6b1927ec468 662 PRINTS PR01159 DNA gyrase subunit B signature 396 416 1.1E-12 T 21-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS01605 c994156d2729feaf1aa7f6b1927ec468 662 PRINTS PR01159 DNA gyrase subunit B signature 626 642 1.1E-12 T 21-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS01605 c994156d2729feaf1aa7f6b1927ec468 662 PRINTS PR01159 DNA gyrase subunit B signature 20 30 1.1E-12 T 21-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS01605 c994156d2729feaf1aa7f6b1927ec468 662 PRINTS PR01159 DNA gyrase subunit B signature 265 283 1.1E-12 T 21-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS01605 c994156d2729feaf1aa7f6b1927ec468 662 PRINTS PR01159 DNA gyrase subunit B signature 334 350 1.1E-12 T 21-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS01605 c994156d2729feaf1aa7f6b1927ec468 662 Gene3D G3DSA:3.30.230.10 241 412 1.5E-40 T 21-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAF_RS01605 c994156d2729feaf1aa7f6b1927ec468 662 Pfam PF00204 DNA gyrase B 242 411 2.0E-40 T 21-04-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS01605 c994156d2729feaf1aa7f6b1927ec468 662 SMART SM00387 45 191 7.5E-22 T 21-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RAF_RS01605 c994156d2729feaf1aa7f6b1927ec468 662 SUPERFAMILY SSF54211 242 412 1.04E-38 T 21-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RAF_RS01605 c994156d2729feaf1aa7f6b1927ec468 662 Gene3D G3DSA:3.30.565.10 20 225 7.8E-75 T 21-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RAF_RS01605 c994156d2729feaf1aa7f6b1927ec468 662 Pfam PF01751 Toprim domain 440 547 7.4E-18 T 21-04-2016 IPR006171 Toprim domain RAF_RS01605 c994156d2729feaf1aa7f6b1927ec468 662 Gene3D G3DSA:3.40.50.670 425 637 8.6E-79 T 21-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS01605 c994156d2729feaf1aa7f6b1927ec468 662 SUPERFAMILY SSF55874 20 222 1.26E-54 T 21-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RAF_RS04610 c06a2cb1f93956a2f478ff77023b9724 213 SMART SM00882 1 198 2.1E-67 T 21-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RAF_RS04610 c06a2cb1f93956a2f478ff77023b9724 213 SUPERFAMILY SSF100950 1 208 2.37E-78 T 21-04-2016 RAF_RS04610 c06a2cb1f93956a2f478ff77023b9724 213 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 2 196 9.8E-72 T 21-04-2016 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 RAF_RS04610 c06a2cb1f93956a2f478ff77023b9724 213 Pfam PF01144 Coenzyme A transferase 1 196 8.5E-70 T 21-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RAF_RS04610 c06a2cb1f93956a2f478ff77023b9724 213 Gene3D G3DSA:3.40.1080.10 1 197 1.9E-88 T 21-04-2016 RAF_RS04610 c06a2cb1f93956a2f478ff77023b9724 213 PANTHER PTHR13707 1 212 5.1E-123 T 21-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RAF_RS03745 25ecd17ae3c9132c7aa2b6fcded75751 110 PANTHER PTHR10072:SF41 1 110 3.9E-51 T 21-04-2016 RAF_RS03745 25ecd17ae3c9132c7aa2b6fcded75751 110 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 5 110 6.5E-40 T 21-04-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 RAF_RS03745 25ecd17ae3c9132c7aa2b6fcded75751 110 PANTHER PTHR10072 1 110 3.9E-51 T 21-04-2016 RAF_RS03745 25ecd17ae3c9132c7aa2b6fcded75751 110 SUPERFAMILY SSF89360 3 96 2.55E-29 T 21-04-2016 IPR000361 FeS cluster biogenesis RAF_RS03745 25ecd17ae3c9132c7aa2b6fcded75751 110 Gene3D G3DSA:2.60.300.12 4 99 6.5E-34 T 21-04-2016 IPR000361 FeS cluster biogenesis RAF_RS03745 25ecd17ae3c9132c7aa2b6fcded75751 110 Pfam PF01521 Iron-sulphur cluster biosynthesis 5 106 1.1E-20 T 21-04-2016 IPR000361 FeS cluster biogenesis RAF_RS03745 25ecd17ae3c9132c7aa2b6fcded75751 110 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 91 108 - T 21-04-2016 IPR017870 FeS cluster insertion, C-terminal, conserved site RAF_RS01005 136f21ed33726bb8319a7a558ca8f0ee 493 ProSitePatterns PS00571 Amidases signature. 156 187 - T 21-04-2016 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAF_RS01005 136f21ed33726bb8319a7a558ca8f0ee 493 Gene3D G3DSA:3.90.1300.10 2 485 1.0E-162 T 21-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAF_RS01005 136f21ed33726bb8319a7a558ca8f0ee 493 PANTHER PTHR11895 1 490 2.1E-208 T 21-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAF_RS01005 136f21ed33726bb8319a7a558ca8f0ee 493 SUPERFAMILY SSF75304 2 481 1.83E-143 T 21-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAF_RS01005 136f21ed33726bb8319a7a558ca8f0ee 493 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 12 484 89.924 T 21-04-2016 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAF_RS01005 136f21ed33726bb8319a7a558ca8f0ee 493 Pfam PF01425 Amidase 25 473 3.2E-141 T 21-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAF_RS01005 136f21ed33726bb8319a7a558ca8f0ee 493 PANTHER PTHR11895:SF7 1 490 2.1E-208 T 21-04-2016 RAF_RS01005 136f21ed33726bb8319a7a558ca8f0ee 493 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 16 482 3.9E-168 T 21-04-2016 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RAF_RS06780 52715cc3864bc79254b908dd10e7e8a7 162 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 18 49 - T 21-04-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 RAF_RS06780 52715cc3864bc79254b908dd10e7e8a7 162 PANTHER PTHR30437 5 157 3.8E-63 T 21-04-2016 RAF_RS06780 52715cc3864bc79254b908dd10e7e8a7 162 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 121 137 - T 21-04-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 RAF_RS06780 52715cc3864bc79254b908dd10e7e8a7 162 Pfam PF03449 Transcription elongation factor, N-terminal 6 75 1.1E-31 T 21-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 RAF_RS06780 52715cc3864bc79254b908dd10e7e8a7 162 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 6 156 2.0E-61 T 21-04-2016 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 RAF_RS06780 52715cc3864bc79254b908dd10e7e8a7 162 Hamap MF_00105 Transcription elongation factor GreA [greA]. 3 156 33.549 T 21-04-2016 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 RAF_RS06780 52715cc3864bc79254b908dd10e7e8a7 162 Gene3D G3DSA:3.10.50.30 80 159 5.5E-29 T 21-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 RAF_RS06780 52715cc3864bc79254b908dd10e7e8a7 162 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 83 157 1.4E-27 T 21-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 RAF_RS06780 52715cc3864bc79254b908dd10e7e8a7 162 Gene3D G3DSA:1.10.287.180 3 76 1.5E-33 T 21-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 RAF_RS06780 52715cc3864bc79254b908dd10e7e8a7 162 SUPERFAMILY SSF54534 82 157 9.16E-23 T 21-04-2016 RAF_RS06780 52715cc3864bc79254b908dd10e7e8a7 162 PIRSF PIRSF006092 1 159 1.1E-51 T 21-04-2016 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 RAF_RS06780 52715cc3864bc79254b908dd10e7e8a7 162 SUPERFAMILY SSF46557 4 78 3.53E-27 T 21-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 RAF_RS00945 abc13a51ac808be5cd19d906095b3b4c 1372 Pfam PF04997 RNA polymerase Rpb1, domain 1 14 342 1.2E-90 T 21-04-2016 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RAF_RS00945 abc13a51ac808be5cd19d906095b3b4c 1372 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 18 1014 0.0 T 21-04-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAF_RS00945 abc13a51ac808be5cd19d906095b3b4c 1372 Pfam PF04998 RNA polymerase Rpb1, domain 5 760 1307 3.6E-68 T 21-04-2016 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RAF_RS00945 abc13a51ac808be5cd19d906095b3b4c 1372 Pfam PF00623 RNA polymerase Rpb1, domain 2 392 485 6.0E-26 T 21-04-2016 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RAF_RS00945 abc13a51ac808be5cd19d906095b3b4c 1372 Pfam PF00623 RNA polymerase Rpb1, domain 2 344 392 4.9E-8 T 21-04-2016 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RAF_RS00945 abc13a51ac808be5cd19d906095b3b4c 1372 Gene3D G3DSA:2.40.40.20 417 489 6.9E-36 T 21-04-2016 RAF_RS00945 abc13a51ac808be5cd19d906095b3b4c 1372 Gene3D G3DSA:2.40.40.20 349 376 6.9E-36 T 21-04-2016 RAF_RS00945 abc13a51ac808be5cd19d906095b3b4c 1372 SMART SM00663 235 514 1.4E-179 T 21-04-2016 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RAF_RS00945 abc13a51ac808be5cd19d906095b3b4c 1372 Pfam PF04983 RNA polymerase Rpb1, domain 3 489 642 1.9E-28 T 21-04-2016 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RAF_RS00945 abc13a51ac808be5cd19d906095b3b4c 1372 Hamap MF_01323 DNA-directed RNA polymerase subunit gamma [rpoC1]. 12 636 32.087 T 21-04-2016 RAF_RS00945 abc13a51ac808be5cd19d906095b3b4c 1372 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 14 1372 10.144 T 21-04-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RAF_RS00945 abc13a51ac808be5cd19d906095b3b4c 1372 SUPERFAMILY SSF64484 1125 1356 0.0 T 21-04-2016 RAF_RS00945 abc13a51ac808be5cd19d906095b3b4c 1372 SUPERFAMILY SSF64484 15 938 0.0 T 21-04-2016 RAF_RS00945 abc13a51ac808be5cd19d906095b3b4c 1372 PANTHER PTHR19376 960 1149 0.0 T 21-04-2016 RAF_RS00945 abc13a51ac808be5cd19d906095b3b4c 1372 PANTHER PTHR19376 1169 1254 0.0 T 21-04-2016 RAF_RS00945 abc13a51ac808be5cd19d906095b3b4c 1372 PANTHER PTHR19376 3 937 0.0 T 21-04-2016 RAF_RS00945 abc13a51ac808be5cd19d906095b3b4c 1372 PANTHER PTHR19376 1295 1356 0.0 T 21-04-2016 RAF_RS00945 abc13a51ac808be5cd19d906095b3b4c 1372 PANTHER PTHR19376:SF32 960 1149 0.0 T 21-04-2016 RAF_RS00945 abc13a51ac808be5cd19d906095b3b4c 1372 PANTHER PTHR19376:SF32 1169 1254 0.0 T 21-04-2016 RAF_RS00945 abc13a51ac808be5cd19d906095b3b4c 1372 PANTHER PTHR19376:SF32 3 937 0.0 T 21-04-2016 RAF_RS00945 abc13a51ac808be5cd19d906095b3b4c 1372 PANTHER PTHR19376:SF32 1295 1356 0.0 T 21-04-2016 RAF_RS00945 abc13a51ac808be5cd19d906095b3b4c 1372 Gene3D G3DSA:2.40.50.100 1147 1202 1.9E-9 T 21-04-2016 RAF_RS00945 abc13a51ac808be5cd19d906095b3b4c 1372 Pfam PF05000 RNA polymerase Rpb1, domain 4 671 748 1.9E-16 T 21-04-2016 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 RAF_RS02230 fc3e6f6fc7d4a6e9318dffd14819399a 450 Gene3D G3DSA:1.10.8.10 125 177 3.6E-24 T 21-04-2016 RAF_RS02230 fc3e6f6fc7d4a6e9318dffd14819399a 450 Gene3D G3DSA:1.10.8.10 218 248 3.6E-24 T 21-04-2016 RAF_RS02230 fc3e6f6fc7d4a6e9318dffd14819399a 450 PANTHER PTHR11262:SF3 223 450 1.2E-187 T 21-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 RAF_RS02230 fc3e6f6fc7d4a6e9318dffd14819399a 450 PANTHER PTHR11262:SF3 15 116 1.2E-187 T 21-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 RAF_RS02230 fc3e6f6fc7d4a6e9318dffd14819399a 450 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 15 450 6.0E-175 T 21-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 RAF_RS02230 fc3e6f6fc7d4a6e9318dffd14819399a 450 PANTHER PTHR11262 223 450 1.2E-187 T 21-04-2016 RAF_RS02230 fc3e6f6fc7d4a6e9318dffd14819399a 450 PANTHER PTHR11262 15 116 1.2E-187 T 21-04-2016 RAF_RS02230 fc3e6f6fc7d4a6e9318dffd14819399a 450 Gene3D G3DSA:3.40.50.300 251 338 7.9E-47 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02230 fc3e6f6fc7d4a6e9318dffd14819399a 450 Gene3D G3DSA:3.40.50.300 16 121 7.9E-47 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02230 fc3e6f6fc7d4a6e9318dffd14819399a 450 Gene3D G3DSA:1.10.8.60 341 450 9.9E-34 T 21-04-2016 RAF_RS02230 fc3e6f6fc7d4a6e9318dffd14819399a 450 SUPERFAMILY SSF52540 16 445 4.21E-80 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02230 fc3e6f6fc7d4a6e9318dffd14819399a 450 Pfam PF07724 AAA domain (Cdc48 subfamily) 172 336 9.7E-39 T 21-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RAF_RS02230 fc3e6f6fc7d4a6e9318dffd14819399a 450 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 12 450 41.2 T 21-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 RAF_RS02230 fc3e6f6fc7d4a6e9318dffd14819399a 450 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 342 412 5.9E-5 T 21-04-2016 IPR019489 Clp ATPase, C-terminal RAF_RS02230 fc3e6f6fc7d4a6e9318dffd14819399a 450 SMART SM00382 60 339 9.9E-12 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS02230 fc3e6f6fc7d4a6e9318dffd14819399a 450 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 64 112 2.9E-5 T 21-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RAF_RS02230 fc3e6f6fc7d4a6e9318dffd14819399a 450 SMART SM01086 342 438 9.1E-18 T 21-04-2016 IPR019489 Clp ATPase, C-terminal RAF_RS04060 d441794243d503e6ff8a92fbc7c4cfe6 458 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 2 456 7.7E-137 T 21-04-2016 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 RAF_RS04060 d441794243d503e6ff8a92fbc7c4cfe6 458 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 18 456 14.786 T 21-04-2016 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 RAF_RS04060 d441794243d503e6ff8a92fbc7c4cfe6 458 Pfam PF00361 Proton-conducting membrane transporter 115 408 2.6E-61 T 21-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RAF_RS04060 d441794243d503e6ff8a92fbc7c4cfe6 458 PANTHER PTHR22773:SF41 4 458 1.1E-97 T 21-04-2016 RAF_RS04060 d441794243d503e6ff8a92fbc7c4cfe6 458 PANTHER PTHR22773 4 458 1.1E-97 T 21-04-2016 RAF_RS05590 bd6bc3f20ea3abd59030966206ee98a2 689 SUPERFAMILY SSF50249 326 405 1.88E-26 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS05590 bd6bc3f20ea3abd59030966206ee98a2 689 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 615 686 1.1E-11 T 21-04-2016 IPR001357 BRCT domain RAF_RS05590 bd6bc3f20ea3abd59030966206ee98a2 689 Gene3D G3DSA:1.10.287.610 5 75 4.1E-23 T 21-04-2016 RAF_RS05590 bd6bc3f20ea3abd59030966206ee98a2 689 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 123 152 - T 21-04-2016 IPR018239 NAD-dependent DNA ligase, active site RAF_RS05590 bd6bc3f20ea3abd59030966206ee98a2 689 Gene3D G3DSA:3.30.470.30 127 257 4.2E-47 T 21-04-2016 RAF_RS05590 bd6bc3f20ea3abd59030966206ee98a2 689 SMART SM00292 612 689 3.7E-10 T 21-04-2016 IPR001357 BRCT domain RAF_RS05590 bd6bc3f20ea3abd59030966206ee98a2 689 Gene3D G3DSA:1.10.150.20 440 514 1.0E-24 T 21-04-2016 RAF_RS05590 bd6bc3f20ea3abd59030966206ee98a2 689 Gene3D G3DSA:3.40.50.10190 612 687 7.0E-21 T 21-04-2016 IPR001357 BRCT domain RAF_RS05590 bd6bc3f20ea3abd59030966206ee98a2 689 SUPERFAMILY SSF56091 9 321 1.8E-112 T 21-04-2016 RAF_RS05590 bd6bc3f20ea3abd59030966206ee98a2 689 PANTHER PTHR23389 9 544 1.5E-170 T 21-04-2016 RAF_RS05590 bd6bc3f20ea3abd59030966206ee98a2 689 SUPERFAMILY SSF52113 613 687 3.36E-15 T 21-04-2016 IPR001357 BRCT domain RAF_RS05590 bd6bc3f20ea3abd59030966206ee98a2 689 SMART SM00532 11 453 2.3E-257 T 21-04-2016 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 RAF_RS05590 bd6bc3f20ea3abd59030966206ee98a2 689 Hamap MF_01588 DNA ligase [ligA]. 10 686 47.499 T 21-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RAF_RS05590 bd6bc3f20ea3abd59030966206ee98a2 689 PIRSF PIRSF001604 3 689 8.3E-251 T 21-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RAF_RS05590 bd6bc3f20ea3abd59030966206ee98a2 689 Pfam PF12826 Helix-hairpin-helix motif 521 594 1.4E-12 T 21-04-2016 RAF_RS05590 bd6bc3f20ea3abd59030966206ee98a2 689 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 336 351 - T 21-04-2016 IPR033136 NAD-dependent DNA ligase, conserved site RAF_RS05590 bd6bc3f20ea3abd59030966206ee98a2 689 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 326 403 5.7E-35 T 21-04-2016 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 RAF_RS05590 bd6bc3f20ea3abd59030966206ee98a2 689 Gene3D G3DSA:1.10.150.20 515 597 3.5E-20 T 21-04-2016 RAF_RS05590 bd6bc3f20ea3abd59030966206ee98a2 689 PANTHER PTHR23389:SF9 9 544 1.5E-170 T 21-04-2016 RAF_RS05590 bd6bc3f20ea3abd59030966206ee98a2 689 SUPERFAMILY SSF47781 410 597 1.25E-45 T 21-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 RAF_RS05590 bd6bc3f20ea3abd59030966206ee98a2 689 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 11 322 5.3E-119 T 21-04-2016 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 RAF_RS05590 bd6bc3f20ea3abd59030966206ee98a2 689 Gene3D G3DSA:2.40.50.140 326 395 1.7E-32 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS05590 bd6bc3f20ea3abd59030966206ee98a2 689 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 413 439 8.6E-6 T 21-04-2016 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 RAF_RS05590 bd6bc3f20ea3abd59030966206ee98a2 689 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 19 682 3.1E-228 T 21-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RAF_RS00455 445e844e7e924b7ad226ea6864f3b50f 255 PANTHER PTHR13696:SF52 1 255 2.3E-86 T 21-04-2016 RAF_RS00455 445e844e7e924b7ad226ea6864f3b50f 255 Gene3D G3DSA:3.40.50.300 2 252 1.4E-69 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00455 445e844e7e924b7ad226ea6864f3b50f 255 PANTHER PTHR13696 1 255 2.3E-86 T 21-04-2016 RAF_RS00455 445e844e7e924b7ad226ea6864f3b50f 255 Pfam PF13614 AAA domain 1 177 5.7E-66 T 21-04-2016 IPR025669 AAA domain RAF_RS00455 445e844e7e924b7ad226ea6864f3b50f 255 SUPERFAMILY SSF52540 1 252 1.34E-65 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05575 5a15c97c1cf24e94bb562c4ce7f3aec6 284 SUPERFAMILY SSF51261 87 278 1.67E-43 T 21-04-2016 IPR011055 Duplicated hybrid motif RAF_RS05575 5a15c97c1cf24e94bb562c4ce7f3aec6 284 PANTHER PTHR21666 157 278 1.4E-30 T 21-04-2016 RAF_RS05575 5a15c97c1cf24e94bb562c4ce7f3aec6 284 Pfam PF01551 Peptidase family M23 180 274 9.1E-30 T 21-04-2016 IPR016047 Peptidase M23 RAF_RS05575 5a15c97c1cf24e94bb562c4ce7f3aec6 284 Gene3D G3DSA:2.70.70.10 135 278 9.3E-41 T 21-04-2016 RAF_RS02245 69f8fe00b9fc18e28f769662e04ac8dd 168 SUPERFAMILY SSF52540 13 143 1.95E-5 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02245 69f8fe00b9fc18e28f769662e04ac8dd 168 PANTHER PTHR32039:SF7 9 168 1.6E-38 T 21-04-2016 IPR004482 Mg chelatase-related protein RAF_RS02245 69f8fe00b9fc18e28f769662e04ac8dd 168 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 45 140 9.7E-26 T 21-04-2016 IPR025158 Mg chelatase-related protein, C-terminal domain RAF_RS02245 69f8fe00b9fc18e28f769662e04ac8dd 168 Pfam PF01078 Magnesium chelatase, subunit ChlI 3 32 6.2E-5 T 21-04-2016 IPR000523 Magnesium chelatase ChlI domain RAF_RS02245 69f8fe00b9fc18e28f769662e04ac8dd 168 PANTHER PTHR32039 9 168 1.6E-38 T 21-04-2016 RAF_RS06270 9b2d24d35c5f24c77c0f1ae8312c7134 184 PRINTS PR00125 ATP synthase delta subunit signature 6 25 7.5E-17 T 21-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RAF_RS06270 9b2d24d35c5f24c77c0f1ae8312c7134 184 PRINTS PR00125 ATP synthase delta subunit signature 137 152 7.5E-17 T 21-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RAF_RS06270 9b2d24d35c5f24c77c0f1ae8312c7134 184 PRINTS PR00125 ATP synthase delta subunit signature 87 101 7.5E-17 T 21-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RAF_RS06270 9b2d24d35c5f24c77c0f1ae8312c7134 184 PRINTS PR00125 ATP synthase delta subunit signature 152 170 7.5E-17 T 21-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RAF_RS06270 9b2d24d35c5f24c77c0f1ae8312c7134 184 PRINTS PR00125 ATP synthase delta subunit signature 76 87 7.5E-17 T 21-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RAF_RS06270 9b2d24d35c5f24c77c0f1ae8312c7134 184 Hamap MF_01416 ATP synthase subunit delta [atpD]. 2 179 16.881 T 21-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RAF_RS06270 9b2d24d35c5f24c77c0f1ae8312c7134 184 SUPERFAMILY SSF47928 6 107 2.48E-19 T 21-04-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain RAF_RS06270 9b2d24d35c5f24c77c0f1ae8312c7134 184 Gene3D G3DSA:1.10.520.20 7 107 1.8E-14 T 21-04-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain RAF_RS06270 9b2d24d35c5f24c77c0f1ae8312c7134 184 Pfam PF00213 ATP synthase delta (OSCP) subunit 8 177 1.7E-36 T 21-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RAF_RS06270 9b2d24d35c5f24c77c0f1ae8312c7134 184 PANTHER PTHR11910 10 181 1.0E-31 T 21-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RAF_RS06270 9b2d24d35c5f24c77c0f1ae8312c7134 184 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 8 177 4.6E-31 T 21-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 RAF_RS03455 2c5eed5a011c5fd87cd931ffe4d5ab0e 222 PANTHER PTHR11260 1 206 2.8E-126 T 21-04-2016 RAF_RS03455 2c5eed5a011c5fd87cd931ffe4d5ab0e 222 Gene3D G3DSA:1.20.1050.10 97 218 2.2E-28 T 21-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RAF_RS03455 2c5eed5a011c5fd87cd931ffe4d5ab0e 222 Pfam PF00043 Glutathione S-transferase, C-terminal domain 129 198 2.4E-6 T 21-04-2016 IPR004046 Glutathione S-transferase, C-terminal RAF_RS03455 2c5eed5a011c5fd87cd931ffe4d5ab0e 222 PANTHER PTHR11260:SF286 1 206 2.8E-126 T 21-04-2016 RAF_RS03455 2c5eed5a011c5fd87cd931ffe4d5ab0e 222 Pfam PF13417 Glutathione S-transferase, N-terminal domain 4 76 4.4E-9 T 21-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RAF_RS03455 2c5eed5a011c5fd87cd931ffe4d5ab0e 222 SUPERFAMILY SSF52833 2 103 6.47E-15 T 21-04-2016 IPR012336 Thioredoxin-like fold RAF_RS03455 2c5eed5a011c5fd87cd931ffe4d5ab0e 222 SUPERFAMILY SSF47616 70 216 1.53E-21 T 21-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like RAF_RS03455 2c5eed5a011c5fd87cd931ffe4d5ab0e 222 Gene3D G3DSA:3.40.30.10 3 96 1.6E-16 T 21-04-2016 IPR012336 Thioredoxin-like fold RAF_RS01210 866829b1449c698154a54d2015372a2b 545 PIRSF PIRSF003128 1 545 9.9E-182 T 21-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 RAF_RS01210 866829b1449c698154a54d2015372a2b 545 Gene3D G3DSA:3.40.50.300 1 204 3.1E-47 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01210 866829b1449c698154a54d2015372a2b 545 PANTHER PTHR11059 2 543 2.5E-128 T 21-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 RAF_RS01210 866829b1449c698154a54d2015372a2b 545 SUPERFAMILY SSF52540 3 50 1.11E-27 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01210 866829b1449c698154a54d2015372a2b 545 SUPERFAMILY SSF52540 288 502 1.11E-27 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01210 866829b1449c698154a54d2015372a2b 545 Gene3D G3DSA:3.40.50.300 357 379 1.3E-5 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01210 866829b1449c698154a54d2015372a2b 545 Gene3D G3DSA:3.40.50.300 423 505 1.3E-5 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01210 866829b1449c698154a54d2015372a2b 545 Pfam PF02463 RecF/RecN/SMC N terminal domain 4 501 6.5E-23 T 21-04-2016 IPR003395 RecF/RecN/SMC, N-terminal RAF_RS01210 866829b1449c698154a54d2015372a2b 545 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 544 4.8E-137 T 21-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 RAF_RS01210 866829b1449c698154a54d2015372a2b 545 SUPERFAMILY SSF52540 1 213 4.16E-49 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05005 7a2cc65017cf28a7e3d239113e8b3df7 92 Pfam PF01649 Ribosomal protein S20 2 84 5.5E-22 T 21-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05005 7a2cc65017cf28a7e3d239113e8b3df7 92 SUPERFAMILY SSF46992 3 86 7.98E-24 T 21-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05005 7a2cc65017cf28a7e3d239113e8b3df7 92 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 14.098 T 21-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05005 7a2cc65017cf28a7e3d239113e8b3df7 92 PANTHER PTHR33398 1 88 1.5E-20 T 21-04-2016 RAF_RS05005 7a2cc65017cf28a7e3d239113e8b3df7 92 Gene3D G3DSA:1.20.58.110 1 87 1.5E-25 T 21-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05005 7a2cc65017cf28a7e3d239113e8b3df7 92 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 12 87 2.0E-34 T 21-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05005 7a2cc65017cf28a7e3d239113e8b3df7 92 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 86 5.8E-21 T 21-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS04745 73b54a69cc9b37a45e476cb99d9383de 225 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 18 225 36.134 T 21-04-2016 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703|UniPathway: UPA00391 RAF_RS04745 73b54a69cc9b37a45e476cb99d9383de 225 Gene3D G3DSA:3.20.20.70 44 123 6.2E-12 T 21-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RAF_RS04745 73b54a69cc9b37a45e476cb99d9383de 225 Pfam PF04055 Radical SAM superfamily 42 124 7.3E-10 T 21-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RAF_RS04745 73b54a69cc9b37a45e476cb99d9383de 225 PIRSF PIRSF000370 16 225 3.8E-42 T 21-04-2016 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703|UniPathway: UPA00391 RAF_RS04745 73b54a69cc9b37a45e476cb99d9383de 225 SUPERFAMILY SSF102114 37 124 8.63E-12 T 21-04-2016 RAF_RS04745 73b54a69cc9b37a45e476cb99d9383de 225 PANTHER PTHR11228 17 190 5.9E-25 T 21-04-2016 RAF_RS04745 73b54a69cc9b37a45e476cb99d9383de 225 Pfam PF13394 4Fe-4S single cluster domain 39 124 2.9E-12 T 21-04-2016 RAF_RS04745 73b54a69cc9b37a45e476cb99d9383de 225 PANTHER PTHR11228:SF6 17 190 5.9E-25 T 21-04-2016 RAF_RS05490 072db4f381f80f4acc61a52c676beeb8 416 PANTHER PTHR30489 10 416 1.6E-80 T 21-04-2016 RAF_RS05490 072db4f381f80f4acc61a52c676beeb8 416 Pfam PF12704 MacB-like periplasmic core domain 28 214 3.9E-18 T 21-04-2016 IPR025857 MacB-like periplasmic core domain RAF_RS05490 072db4f381f80f4acc61a52c676beeb8 416 PANTHER PTHR30489:SF8 10 416 1.6E-80 T 21-04-2016 RAF_RS05490 072db4f381f80f4acc61a52c676beeb8 416 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 6 416 8.0E-153 T 21-04-2016 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 RAF_RS05490 072db4f381f80f4acc61a52c676beeb8 416 Pfam PF02687 FtsX-like permease family 277 409 2.3E-19 T 21-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 RAF_RS00445 e03fe2d8c8ac969064692be40f1e362e 622 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 364 387 - T 21-04-2016 IPR020595 MnmG-related, conserved site RAF_RS00445 e03fe2d8c8ac969064692be40f1e362e 622 Gene3D G3DSA:3.50.50.60 3 170 2.0E-33 T 21-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAF_RS00445 e03fe2d8c8ac969064692be40f1e362e 622 SMART SM01228 539 610 2.0E-32 T 21-04-2016 RAF_RS00445 e03fe2d8c8ac969064692be40f1e362e 622 PANTHER PTHR11806 3 615 0.0 T 21-04-2016 RAF_RS00445 e03fe2d8c8ac969064692be40f1e362e 622 PANTHER PTHR11806:SF0 3 615 0.0 T 21-04-2016 RAF_RS00445 e03fe2d8c8ac969064692be40f1e362e 622 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 5.6E-6 T 21-04-2016 RAF_RS00445 e03fe2d8c8ac969064692be40f1e362e 622 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 148 157 5.6E-6 T 21-04-2016 RAF_RS00445 e03fe2d8c8ac969064692be40f1e362e 622 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 4 615 1.2E-253 T 21-04-2016 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 RAF_RS00445 e03fe2d8c8ac969064692be40f1e362e 622 SUPERFAMILY SSF51905 94 257 2.8E-43 T 21-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAF_RS00445 e03fe2d8c8ac969064692be40f1e362e 622 SUPERFAMILY SSF51905 3 63 2.8E-43 T 21-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAF_RS00445 e03fe2d8c8ac969064692be40f1e362e 622 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 2 617 40.374 T 21-04-2016 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 RAF_RS00445 e03fe2d8c8ac969064692be40f1e362e 622 Pfam PF01134 Glucose inhibited division protein A 5 394 4.0E-170 T 21-04-2016 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 RAF_RS00445 e03fe2d8c8ac969064692be40f1e362e 622 Pfam PF13932 GidA associated domain 397 608 2.1E-61 T 21-04-2016 IPR026904 GidA associated domain 3 RAF_RS00445 e03fe2d8c8ac969064692be40f1e362e 622 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 269 283 - T 21-04-2016 IPR020595 MnmG-related, conserved site RAF_RS00625 1bc5caadf3e64d330491897810df864d 401 Pfam PF00155 Aminotransferase class I and II 32 392 4.2E-77 T 21-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RAF_RS00625 1bc5caadf3e64d330491897810df864d 401 Gene3D G3DSA:3.40.640.10 45 275 4.6E-72 T 21-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RAF_RS00625 1bc5caadf3e64d330491897810df864d 401 SUPERFAMILY SSF53383 1 396 2.04E-112 T 21-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RAF_RS00625 1bc5caadf3e64d330491897810df864d 401 PANTHER PTHR11751 15 397 5.0E-183 T 21-04-2016 RAF_RS00625 1bc5caadf3e64d330491897810df864d 401 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 236 249 - T 21-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 RAF_RS00625 1bc5caadf3e64d330491897810df864d 401 PANTHER PTHR11751:SF306 15 397 5.0E-183 T 21-04-2016 RAF_RS00625 1bc5caadf3e64d330491897810df864d 401 Gene3D G3DSA:3.90.1150.10 276 396 9.4E-45 T 21-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RAF_RS05450 d622e22b352d93841ea0d8cab0c7e74d 425 SUPERFAMILY SSF52540 58 399 5.89E-72 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05450 d622e22b352d93841ea0d8cab0c7e74d 425 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 3 409 51.049 T 21-04-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 RAF_RS05450 d622e22b352d93841ea0d8cab0c7e74d 425 SUPERFAMILY SSF57716 10 45 1.85E-10 T 21-04-2016 RAF_RS05450 d622e22b352d93841ea0d8cab0c7e74d 425 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 4 401 2.5E-191 T 21-04-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 RAF_RS05450 d622e22b352d93841ea0d8cab0c7e74d 425 SMART SM01086 312 405 6.4E-22 T 21-04-2016 IPR019489 Clp ATPase, C-terminal RAF_RS05450 d622e22b352d93841ea0d8cab0c7e74d 425 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 312 382 1.4E-12 T 21-04-2016 IPR019489 Clp ATPase, C-terminal RAF_RS05450 d622e22b352d93841ea0d8cab0c7e74d 425 Pfam PF06689 ClpX C4-type zinc finger 11 47 3.2E-17 T 21-04-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 RAF_RS05450 d622e22b352d93841ea0d8cab0c7e74d 425 SMART SM00994 9 48 1.5E-20 T 21-04-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 RAF_RS05450 d622e22b352d93841ea0d8cab0c7e74d 425 Pfam PF07724 AAA domain (Cdc48 subfamily) 109 306 2.0E-49 T 21-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RAF_RS05450 d622e22b352d93841ea0d8cab0c7e74d 425 PANTHER PTHR11262:SF4 4 405 2.3E-228 T 21-04-2016 RAF_RS05450 d622e22b352d93841ea0d8cab0c7e74d 425 SMART SM00382 108 358 4.1E-8 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS05450 d622e22b352d93841ea0d8cab0c7e74d 425 PANTHER PTHR11262 4 405 2.3E-228 T 21-04-2016 RAF_RS05450 d622e22b352d93841ea0d8cab0c7e74d 425 Gene3D G3DSA:1.10.8.60 311 406 4.3E-31 T 21-04-2016 RAF_RS05450 d622e22b352d93841ea0d8cab0c7e74d 425 Gene3D G3DSA:3.40.50.300 289 306 2.8E-49 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05450 d622e22b352d93841ea0d8cab0c7e74d 425 Gene3D G3DSA:3.40.50.300 61 250 2.8E-49 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00200 b78b69165f1c920dab539f0448c8bef3 140 Gene3D G3DSA:3.20.20.20 99 139 1.2E-10 T 21-04-2016 IPR000489 Pterin-binding domain GO:0042558 RAF_RS00200 b78b69165f1c920dab539f0448c8bef3 140 SUPERFAMILY SSF51717 90 139 8.11E-11 T 21-04-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 RAF_RS00200 b78b69165f1c920dab539f0448c8bef3 140 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 3 58 1.1E-11 T 21-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RAF_RS00200 b78b69165f1c920dab539f0448c8bef3 140 SUPERFAMILY SSF55083 3 63 1.7E-17 T 21-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RAF_RS00200 b78b69165f1c920dab539f0448c8bef3 140 Pfam PF00809 Pterin binding enzyme 104 139 4.5E-6 T 21-04-2016 IPR000489 Pterin-binding domain GO:0042558 RAF_RS00200 b78b69165f1c920dab539f0448c8bef3 140 Gene3D G3DSA:3.30.70.560 3 61 1.4E-16 T 21-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RAF_RS00200 b78b69165f1c920dab539f0448c8bef3 140 PANTHER PTHR20941 3 139 7.8E-30 T 21-04-2016 RAF_RS03415 e347a98f7e3e59ee63f1be4912a888ef 277 Pfam PF00120 Glutamine synthetase, catalytic domain 67 241 2.4E-25 T 21-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RAF_RS03415 e347a98f7e3e59ee63f1be4912a888ef 277 SMART SM01230 18 230 8.7E-12 T 21-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RAF_RS03415 e347a98f7e3e59ee63f1be4912a888ef 277 Gene3D G3DSA:3.30.590.10 64 270 3.3E-33 T 21-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 RAF_RS03415 e347a98f7e3e59ee63f1be4912a888ef 277 SUPERFAMILY SSF55931 25 275 1.9E-42 T 21-04-2016 RAF_RS03415 e347a98f7e3e59ee63f1be4912a888ef 277 PANTHER PTHR20852 25 263 3.2E-16 T 21-04-2016 RAF_RS03140 9743be85aabeb398331743baf1906777 201 SUPERFAMILY SSF111304 7 200 1.57E-64 T 21-04-2016 IPR023627 Recombination protein RecR RAF_RS03140 9743be85aabeb398331743baf1906777 201 PANTHER PTHR30446 3 201 2.7E-71 T 21-04-2016 RAF_RS03140 9743be85aabeb398331743baf1906777 201 Pfam PF13662 Toprim domain 82 173 5.5E-21 T 21-04-2016 IPR006171 Toprim domain RAF_RS03140 9743be85aabeb398331743baf1906777 201 Hamap MF_00017 Recombination protein RecR [recR]. 1 200 76.568 T 21-04-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 RAF_RS03140 9743be85aabeb398331743baf1906777 201 SMART SM00493 82 167 1.4E-6 T 21-04-2016 IPR006171 Toprim domain RAF_RS03140 9743be85aabeb398331743baf1906777 201 PANTHER PTHR30446:SF0 3 201 2.7E-71 T 21-04-2016 RAF_RS03140 9743be85aabeb398331743baf1906777 201 ProSitePatterns PS01300 RecR protein signature. 59 80 - T 21-04-2016 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 RAF_RS03140 9743be85aabeb398331743baf1906777 201 Pfam PF02132 RecR protein 43 80 5.9E-10 T 21-04-2016 IPR023628 Recombination protein RecR, C4-type zinc finger RAF_RS03140 9743be85aabeb398331743baf1906777 201 TIGRFAM TIGR00615 recR: recombination protein RecR 7 197 8.7E-56 T 21-04-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 RAF_RS00965 882d8e26e318134d78dfd3408202df90 144 Pfam PF11304 Protein of unknown function (DUF3106) 11 75 4.9E-5 T 21-04-2016 IPR021455 Protein of unknown function DUF3106 RAF_RS00965 882d8e26e318134d78dfd3408202df90 144 ProDom PD203358 RP144 1 121 1.0E-62 T 21-04-2016 RAF_RS01120 259b2c344c7922512de2ee3376891739 449 Pfam PF00448 SRP54-type protein, GTPase domain 104 296 1.5E-70 T 21-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RAF_RS01120 259b2c344c7922512de2ee3376891739 449 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 270 283 - T 21-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RAF_RS01120 259b2c344c7922512de2ee3376891739 449 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 430 1.2E-176 T 21-04-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 RAF_RS01120 259b2c344c7922512de2ee3376891739 449 SMART SM00382 101 248 1.2E-5 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS01120 259b2c344c7922512de2ee3376891739 449 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 448 32.44 T 21-04-2016 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 RAF_RS01120 259b2c344c7922512de2ee3376891739 449 Gene3D G3DSA:3.40.50.300 96 298 2.8E-69 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01120 259b2c344c7922512de2ee3376891739 449 Pfam PF02978 Signal peptide binding domain 328 428 1.0E-30 T 21-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 RAF_RS01120 259b2c344c7922512de2ee3376891739 449 SUPERFAMILY SSF52540 42 355 7.43E-47 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01120 259b2c344c7922512de2ee3376891739 449 SMART SM00963 1 86 8.2E-33 T 21-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 RAF_RS01120 259b2c344c7922512de2ee3376891739 449 SUPERFAMILY SSF47446 328 430 9.16E-35 T 21-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 RAF_RS01120 259b2c344c7922512de2ee3376891739 449 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 1.4E-19 T 21-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 RAF_RS01120 259b2c344c7922512de2ee3376891739 449 Gene3D G3DSA:1.20.120.140 2 88 1.3E-30 T 21-04-2016 RAF_RS01120 259b2c344c7922512de2ee3376891739 449 PANTHER PTHR11564 1 435 4.2E-215 T 21-04-2016 RAF_RS01120 259b2c344c7922512de2ee3376891739 449 PANTHER PTHR11564:SF7 1 435 4.2E-215 T 21-04-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 RAF_RS01120 259b2c344c7922512de2ee3376891739 449 SMART SM00962 102 297 1.2E-97 T 21-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RAF_RS01120 259b2c344c7922512de2ee3376891739 449 Gene3D G3DSA:1.10.260.30 328 432 1.2E-36 T 21-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 RAF_RS00995 3cd2ae88ed16be8730d9de4f4ec17efc 241 SMART SM00079 24 241 1.9E-4 T 21-04-2016 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 RAF_RS00995 3cd2ae88ed16be8730d9de4f4ec17efc 241 SMART SM00062 24 240 1.2E-58 T 21-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RAF_RS00995 3cd2ae88ed16be8730d9de4f4ec17efc 241 PANTHER PTHR18966:SF191 22 241 2.2E-36 T 21-04-2016 RAF_RS00995 3cd2ae88ed16be8730d9de4f4ec17efc 241 PANTHER PTHR18966 22 241 2.2E-36 T 21-04-2016 RAF_RS00995 3cd2ae88ed16be8730d9de4f4ec17efc 241 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 25 241 2.2E-50 T 21-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RAF_RS00995 3cd2ae88ed16be8730d9de4f4ec17efc 241 Gene3D G3DSA:3.40.190.10 21 98 1.0E-37 T 21-04-2016 RAF_RS00995 3cd2ae88ed16be8730d9de4f4ec17efc 241 Gene3D G3DSA:3.40.190.10 198 241 1.0E-37 T 21-04-2016 RAF_RS00995 3cd2ae88ed16be8730d9de4f4ec17efc 241 Gene3D G3DSA:3.40.190.10 99 193 2.3E-11 T 21-04-2016 RAF_RS00995 3cd2ae88ed16be8730d9de4f4ec17efc 241 SUPERFAMILY SSF53850 22 240 6.77E-55 T 21-04-2016 RAF_RS03440 9f81e131b55cdee410e3d663aa2c0daa 231 Gene3D G3DSA:3.40.225.10 3 199 5.0E-52 T 21-04-2016 IPR001303 Class II aldolase/adducin N-terminal RAF_RS03440 9f81e131b55cdee410e3d663aa2c0daa 231 SMART SM01007 5 185 3.0E-52 T 21-04-2016 IPR001303 Class II aldolase/adducin N-terminal RAF_RS03440 9f81e131b55cdee410e3d663aa2c0daa 231 SUPERFAMILY SSF53639 3 201 7.06E-54 T 21-04-2016 IPR001303 Class II aldolase/adducin N-terminal RAF_RS03440 9f81e131b55cdee410e3d663aa2c0daa 231 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 7 184 1.2E-42 T 21-04-2016 IPR001303 Class II aldolase/adducin N-terminal RAF_RS03440 9f81e131b55cdee410e3d663aa2c0daa 231 PANTHER PTHR10672 7 210 1.5E-66 T 21-04-2016 RAF_RS04815 fd9f2d9a67222eab88f5072630b65dfe 599 SUPERFAMILY SSF47384 345 442 6.67E-11 T 21-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAF_RS04815 fd9f2d9a67222eab88f5072630b65dfe 599 SUPERFAMILY SSF55874 466 585 5.5E-26 T 21-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RAF_RS04815 fd9f2d9a67222eab88f5072630b65dfe 599 PANTHER PTHR24423:SF520 301 584 1.8E-48 T 21-04-2016 RAF_RS04815 fd9f2d9a67222eab88f5072630b65dfe 599 PANTHER PTHR24423:SF520 1 12 1.8E-48 T 21-04-2016 RAF_RS04815 fd9f2d9a67222eab88f5072630b65dfe 599 Gene3D G3DSA:1.10.287.130 368 426 1.1E-8 T 21-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAF_RS04815 fd9f2d9a67222eab88f5072630b65dfe 599 SMART SM00388 371 441 4.6E-11 T 21-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAF_RS04815 fd9f2d9a67222eab88f5072630b65dfe 599 SMART SM00304 307 361 2.4E-13 T 21-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RAF_RS04815 fd9f2d9a67222eab88f5072630b65dfe 599 Gene3D G3DSA:1.10.3720.10 46 112 4.2E-4 T 21-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RAF_RS04815 fd9f2d9a67222eab88f5072630b65dfe 599 Gene3D G3DSA:1.10.3720.10 286 311 4.2E-4 T 21-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RAF_RS04815 fd9f2d9a67222eab88f5072630b65dfe 599 PANTHER PTHR24423 301 584 1.8E-48 T 21-04-2016 RAF_RS04815 fd9f2d9a67222eab88f5072630b65dfe 599 PANTHER PTHR24423 1 12 1.8E-48 T 21-04-2016 RAF_RS04815 fd9f2d9a67222eab88f5072630b65dfe 599 Pfam PF00672 HAMP domain 288 357 5.0E-14 T 21-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 RAF_RS04815 fd9f2d9a67222eab88f5072630b65dfe 599 Pfam PF00512 His Kinase A (phospho-acceptor) domain 373 439 4.0E-10 T 21-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAF_RS04815 fd9f2d9a67222eab88f5072630b65dfe 599 PRINTS PR00344 Bacterial sensor protein C-terminal signature 520 534 8.6E-8 T 21-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RAF_RS04815 fd9f2d9a67222eab88f5072630b65dfe 599 PRINTS PR00344 Bacterial sensor protein C-terminal signature 549 567 8.6E-8 T 21-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RAF_RS04815 fd9f2d9a67222eab88f5072630b65dfe 599 Gene3D G3DSA:3.30.565.10 427 587 2.7E-27 T 21-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RAF_RS04815 fd9f2d9a67222eab88f5072630b65dfe 599 SUPERFAMILY SSF158472 309 358 5.1E-9 T 21-04-2016 RAF_RS04815 fd9f2d9a67222eab88f5072630b65dfe 599 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 588 3.5E-16 T 21-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RAF_RS04815 fd9f2d9a67222eab88f5072630b65dfe 599 SMART SM00387 481 589 4.8E-25 T 21-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RAF_RS03955 ceadb949d3f3ba41206b5b38eb8d5577 182 PANTHER PTHR30481 4 94 3.3E-16 T 21-04-2016 RAF_RS03955 ceadb949d3f3ba41206b5b38eb8d5577 182 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 2 105 4.3E-17 T 21-04-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 RAF_RS03955 ceadb949d3f3ba41206b5b38eb8d5577 182 Gene3D G3DSA:3.40.50.150 10 99 3.6E-17 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS03955 ceadb949d3f3ba41206b5b38eb8d5577 182 PANTHER PTHR30481:SF3 4 94 3.3E-16 T 21-04-2016 RAF_RS03955 ceadb949d3f3ba41206b5b38eb8d5577 182 SUPERFAMILY SSF53335 2 101 1.78E-19 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS03955 ceadb949d3f3ba41206b5b38eb8d5577 182 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 43 49 - T 21-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RAF_RS01060 f53e2f107c20a930022f3c638cef4036 357 SMART SM00228 116 185 1.9E-6 T 21-04-2016 IPR001478 PDZ domain GO:0005515 RAF_RS01060 f53e2f107c20a930022f3c638cef4036 357 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 127 356 1.9E-47 T 21-04-2016 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 RAF_RS01060 f53e2f107c20a930022f3c638cef4036 357 Pfam PF02163 Peptidase family M50 7 343 6.0E-73 T 21-04-2016 IPR008915 Peptidase M50 GO:0004222|GO:0006508 RAF_RS01060 f53e2f107c20a930022f3c638cef4036 357 SUPERFAMILY SSF50156 90 195 5.92E-17 T 21-04-2016 IPR001478 PDZ domain GO:0005515 RAF_RS01060 f53e2f107c20a930022f3c638cef4036 357 PANTHER PTHR22939:SF78 126 357 6.9E-54 T 21-04-2016 RAF_RS01060 f53e2f107c20a930022f3c638cef4036 357 PANTHER PTHR22939 126 357 6.9E-54 T 21-04-2016 RAF_RS01060 f53e2f107c20a930022f3c638cef4036 357 Gene3D G3DSA:2.30.42.10 96 195 1.7E-18 T 21-04-2016 IPR001478 PDZ domain GO:0005515 RAF_RS01060 f53e2f107c20a930022f3c638cef4036 357 Pfam PF13180 PDZ domain 130 183 1.5E-8 T 21-04-2016 IPR001478 PDZ domain GO:0005515 RAF_RS00505 871f17cb6ff5c0929c9045a888c2972b 738 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 30 467 7.6E-148 T 21-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS00505 871f17cb6ff5c0929c9045a888c2972b 738 PANTHER PTHR10169:SF48 2 609 1.3E-202 T 21-04-2016 RAF_RS00505 871f17cb6ff5c0929c9045a888c2972b 738 PANTHER PTHR10169 2 609 1.3E-202 T 21-04-2016 RAF_RS00505 871f17cb6ff5c0929c9045a888c2972b 738 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 6 736 0.0 T 21-04-2016 RAF_RS00505 871f17cb6ff5c0929c9045a888c2972b 738 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 647 682 0.0024 T 21-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RAF_RS00505 871f17cb6ff5c0929c9045a888c2972b 738 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 601 645 0.025 T 21-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RAF_RS00505 871f17cb6ff5c0929c9045a888c2972b 738 SMART SM00434 9 461 3.6E-257 T 21-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS00505 871f17cb6ff5c0929c9045a888c2972b 738 SUPERFAMILY SSF101904 507 735 4.05E-43 T 21-04-2016 RAF_RS00505 871f17cb6ff5c0929c9045a888c2972b 738 Gene3D G3DSA:3.30.1360.40 235 331 1.3E-29 T 21-04-2016 IPR024946 Arginine repressor C-terminal-like domain RAF_RS00505 871f17cb6ff5c0929c9045a888c2972b 738 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 2 736 32.377 T 21-04-2016 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RAF_RS00505 871f17cb6ff5c0929c9045a888c2972b 738 SUPERFAMILY SSF56719 29 476 8.5E-163 T 21-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 RAF_RS00505 871f17cb6ff5c0929c9045a888c2972b 738 Gene3D G3DSA:2.120.10.90 503 722 5.7E-26 T 21-04-2016 RAF_RS00505 871f17cb6ff5c0929c9045a888c2972b 738 Gene3D G3DSA:3.90.199.10 29 233 8.1E-113 T 21-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 RAF_RS00505 871f17cb6ff5c0929c9045a888c2972b 738 Gene3D G3DSA:3.90.199.10 333 398 8.1E-113 T 21-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 RAF_RS06180 1460ebfb32f55f4bcf223a5492aba08a 237 Gene3D G3DSA:2.40.160.20 22 234 9.0E-17 T 21-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RAF_RS06180 1460ebfb32f55f4bcf223a5492aba08a 237 SUPERFAMILY SSF56925 22 234 3.92E-17 T 21-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RAF_RS06180 1460ebfb32f55f4bcf223a5492aba08a 237 ProDom PD052653 PRECURSOR RP787 SIGNAL 23 54 2.0E-11 T 21-04-2016 RAF_RS06180 1460ebfb32f55f4bcf223a5492aba08a 237 Pfam PF13505 Outer membrane protein beta-barrel domain 19 212 3.4E-7 T 21-04-2016 IPR027385 Outer membrane protein beta-barrel RAF_RS05485 faa79eb22a389c370a8558fc2848f79b 390 SUPERFAMILY SSF103473 4 381 2.62E-53 T 21-04-2016 IPR020846 Major facilitator superfamily domain RAF_RS05485 faa79eb22a389c370a8558fc2848f79b 390 PANTHER PTHR23502:SF19 3 371 1.7E-43 T 21-04-2016 RAF_RS05485 faa79eb22a389c370a8558fc2848f79b 390 Pfam PF07690 Major Facilitator Superfamily 8 344 1.8E-43 T 21-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAF_RS05485 faa79eb22a389c370a8558fc2848f79b 390 PANTHER PTHR23502 3 371 1.7E-43 T 21-04-2016 RAF_RS05485 faa79eb22a389c370a8558fc2848f79b 390 Gene3D G3DSA:1.20.1250.20 200 373 5.2E-8 T 21-04-2016 RAF_RS05485 faa79eb22a389c370a8558fc2848f79b 390 Gene3D G3DSA:1.20.1250.20 5 182 3.3E-29 T 21-04-2016 RAF_RS04170 a540dcd94e4f13685918480ffe02147a 503 SUPERFAMILY SSF69705 6 129 9.02E-38 T 21-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 RAF_RS04170 a540dcd94e4f13685918480ffe02147a 503 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 371 420 1.5E-18 T 21-04-2016 IPR010214 Transcription termination factor NusA, C-terminal duplication RAF_RS04170 a540dcd94e4f13685918480ffe02147a 503 Gene3D G3DSA:3.30.300.20 203 280 5.6E-32 T 21-04-2016 IPR015946 K homology domain-like, alpha/beta RAF_RS04170 a540dcd94e4f13685918480ffe02147a 503 Pfam PF08529 NusA N-terminal domain 8 128 8.0E-31 T 21-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 RAF_RS04170 a540dcd94e4f13685918480ffe02147a 503 Pfam PF14520 Helix-hairpin-helix domain 377 413 0.0012 T 21-04-2016 RAF_RS04170 a540dcd94e4f13685918480ffe02147a 503 Pfam PF00575 S1 RNA binding domain 135 197 1.0E-5 T 21-04-2016 IPR003029 S1 domain GO:0003676 RAF_RS04170 a540dcd94e4f13685918480ffe02147a 503 SMART SM00322 307 380 4.4E-5 T 21-04-2016 IPR004087 K Homology domain GO:0003676 RAF_RS04170 a540dcd94e4f13685918480ffe02147a 503 SUPERFAMILY SSF54814 205 281 3.92E-28 T 21-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 RAF_RS04170 a540dcd94e4f13685918480ffe02147a 503 SMART SM00316 137 203 7.3E-10 T 21-04-2016 IPR022967 RNA-binding domain, S1 RAF_RS04170 a540dcd94e4f13685918480ffe02147a 503 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 6 416 28.965 T 21-04-2016 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 RAF_RS04170 a540dcd94e4f13685918480ffe02147a 503 PANTHER PTHR22648:SF0 5 454 2.5E-146 T 21-04-2016 RAF_RS04170 a540dcd94e4f13685918480ffe02147a 503 Gene3D G3DSA:2.40.50.140 133 201 1.4E-27 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS04170 a540dcd94e4f13685918480ffe02147a 503 Gene3D G3DSA:1.10.150.20 435 497 1.7E-7 T 21-04-2016 RAF_RS04170 a540dcd94e4f13685918480ffe02147a 503 Gene3D G3DSA:1.10.150.20 363 420 6.1E-12 T 21-04-2016 RAF_RS04170 a540dcd94e4f13685918480ffe02147a 503 Pfam PF13184 NusA-like KH domain 233 295 1.2E-23 T 21-04-2016 IPR025249 KH domain, NusA-like GO:0003723 RAF_RS04170 a540dcd94e4f13685918480ffe02147a 503 SUPERFAMILY SSF50249 135 202 4.29E-18 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS04170 a540dcd94e4f13685918480ffe02147a 503 SUPERFAMILY SSF47794 436 497 6.02E-5 T 21-04-2016 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 RAF_RS04170 a540dcd94e4f13685918480ffe02147a 503 Gene3D G3DSA:3.30.300.20 281 352 1.0E-27 T 21-04-2016 IPR015946 K homology domain-like, alpha/beta RAF_RS04170 a540dcd94e4f13685918480ffe02147a 503 Gene3D G3DSA:3.30.1480.10 6 128 4.5E-39 T 21-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 RAF_RS04170 a540dcd94e4f13685918480ffe02147a 503 SUPERFAMILY SSF54814 282 348 3.92E-13 T 21-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 RAF_RS04170 a540dcd94e4f13685918480ffe02147a 503 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 8 349 1.0E-117 T 21-04-2016 IPR010213 Transcription termination factor NusA GO:0003723 RAF_RS04170 a540dcd94e4f13685918480ffe02147a 503 PANTHER PTHR22648 5 454 2.5E-146 T 21-04-2016 RAF_RS04170 a540dcd94e4f13685918480ffe02147a 503 SUPERFAMILY SSF47794 355 421 1.57E-10 T 21-04-2016 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 RAF_RS03105 3d6bcb1a8c8dfffd3f7e74f99954a808 676 SUPERFAMILY SSF82171 319 371 5.3E-16 T 21-04-2016 RAF_RS03105 3d6bcb1a8c8dfffd3f7e74f99954a808 676 SUPERFAMILY SSF82171 43 270 5.3E-16 T 21-04-2016 RAF_RS03105 3d6bcb1a8c8dfffd3f7e74f99954a808 676 Gene3D G3DSA:3.40.50.1820 374 638 1.6E-69 T 21-04-2016 IPR029058 Alpha/Beta hydrolase fold RAF_RS03105 3d6bcb1a8c8dfffd3f7e74f99954a808 676 Pfam PF00326 Prolyl oligopeptidase family 426 638 5.8E-47 T 21-04-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 RAF_RS03105 3d6bcb1a8c8dfffd3f7e74f99954a808 676 Gene3D G3DSA:2.130.10.10 346 372 6.6E-26 T 21-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RAF_RS03105 3d6bcb1a8c8dfffd3f7e74f99954a808 676 Gene3D G3DSA:2.130.10.10 29 311 6.6E-26 T 21-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RAF_RS03105 3d6bcb1a8c8dfffd3f7e74f99954a808 676 PANTHER PTHR11731 274 649 6.2E-126 T 21-04-2016 RAF_RS03105 3d6bcb1a8c8dfffd3f7e74f99954a808 676 PANTHER PTHR11731 18 129 6.2E-126 T 21-04-2016 RAF_RS03105 3d6bcb1a8c8dfffd3f7e74f99954a808 676 SUPERFAMILY SSF53474 375 638 1.35E-67 T 21-04-2016 IPR029058 Alpha/Beta hydrolase fold RAF_RS03105 3d6bcb1a8c8dfffd3f7e74f99954a808 676 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 571 593 9.4E-6 T 21-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RAF_RS03105 3d6bcb1a8c8dfffd3f7e74f99954a808 676 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 493 513 9.4E-6 T 21-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RAF_RS03105 3d6bcb1a8c8dfffd3f7e74f99954a808 676 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 435 459 9.4E-6 T 21-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RAF_RS03105 3d6bcb1a8c8dfffd3f7e74f99954a808 676 PANTHER PTHR11731:SF140 274 649 6.2E-126 T 21-04-2016 RAF_RS03105 3d6bcb1a8c8dfffd3f7e74f99954a808 676 PANTHER PTHR11731:SF140 18 129 6.2E-126 T 21-04-2016 RAF_RS06140 6a3e741d217857f448c4a91629d9e7dc 432 PANTHER PTHR11374:SF18 1 429 1.7E-222 T 21-04-2016 RAF_RS06140 6a3e741d217857f448c4a91629d9e7dc 432 SUPERFAMILY SSF51735 1 185 2.03E-47 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS06140 6a3e741d217857f448c4a91629d9e7dc 432 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 197 288 5.9E-35 T 21-04-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 RAF_RS06140 6a3e741d217857f448c4a91629d9e7dc 432 SMART SM00984 312 415 2.0E-41 T 21-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 RAF_RS06140 6a3e741d217857f448c4a91629d9e7dc 432 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 411 2.3E-146 T 21-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 RAF_RS06140 6a3e741d217857f448c4a91629d9e7dc 432 PIRSF PIRSF000124 1 430 7.8E-131 T 21-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 RAF_RS06140 6a3e741d217857f448c4a91629d9e7dc 432 SUPERFAMILY SSF52413 302 426 1.28E-35 T 21-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 RAF_RS06140 6a3e741d217857f448c4a91629d9e7dc 432 PANTHER PTHR11374 1 429 1.7E-222 T 21-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 RAF_RS06140 6a3e741d217857f448c4a91629d9e7dc 432 PIRSF PIRSF500134 1 432 5.9E-155 T 21-04-2016 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00500+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|UniPathway: UPA00038 RAF_RS06140 6a3e741d217857f448c4a91629d9e7dc 432 Gene3D G3DSA:3.40.50.720 1 199 8.1E-68 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS06140 6a3e741d217857f448c4a91629d9e7dc 432 SUPERFAMILY SSF48179 196 289 6.46E-30 T 21-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RAF_RS06140 6a3e741d217857f448c4a91629d9e7dc 432 Gene3D G3DSA:3.40.50.720 228 431 6.7E-72 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS06140 6a3e741d217857f448c4a91629d9e7dc 432 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 181 6.6E-64 T 21-04-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 RAF_RS06140 6a3e741d217857f448c4a91629d9e7dc 432 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 312 415 1.5E-30 T 21-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 RAF_RS06140 6a3e741d217857f448c4a91629d9e7dc 432 Gene3D G3DSA:1.20.5.100 200 225 3.2E-17 T 21-04-2016 RAF_RS00585 d213654f69c45c95d8f0a9699a0de140 459 PANTHER PTHR10890 4 457 1.0E-184 T 21-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RAF_RS00585 d213654f69c45c95d8f0a9699a0de140 459 SMART SM00840 345 404 1.1E-7 T 21-04-2016 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 RAF_RS00585 d213654f69c45c95d8f0a9699a0de140 459 Gene3D G3DSA:3.40.50.620 21 314 3.6E-94 T 21-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS00585 d213654f69c45c95d8f0a9699a0de140 459 SUPERFAMILY SSF47323 325 457 8.5E-24 T 21-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS00585 d213654f69c45c95d8f0a9699a0de140 459 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 5 458 36.735 T 21-04-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 RAF_RS00585 d213654f69c45c95d8f0a9699a0de140 459 Gene3D G3DSA:1.20.120.640 315 381 1.3E-6 T 21-04-2016 RAF_RS00585 d213654f69c45c95d8f0a9699a0de140 459 Pfam PF09190 DALR domain 346 404 9.5E-5 T 21-04-2016 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 RAF_RS00585 d213654f69c45c95d8f0a9699a0de140 459 SUPERFAMILY SSF52374 6 322 8.04E-85 T 21-04-2016 RAF_RS00585 d213654f69c45c95d8f0a9699a0de140 459 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 6 458 5.5E-147 T 21-04-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 RAF_RS00585 d213654f69c45c95d8f0a9699a0de140 459 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 229 250 1.0E-26 T 21-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RAF_RS00585 d213654f69c45c95d8f0a9699a0de140 459 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 198 216 1.0E-26 T 21-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RAF_RS00585 d213654f69c45c95d8f0a9699a0de140 459 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 66 75 1.0E-26 T 21-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RAF_RS00585 d213654f69c45c95d8f0a9699a0de140 459 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 28 39 1.0E-26 T 21-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RAF_RS00585 d213654f69c45c95d8f0a9699a0de140 459 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 18 322 1.6E-114 T 21-04-2016 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 RAF_RS03735 11acec5c4c4076a2c94f6b9ce402a564 410 Pfam PF00266 Aminotransferase class-V 12 374 1.9E-89 T 21-04-2016 IPR000192 Aminotransferase class V domain RAF_RS03735 11acec5c4c4076a2c94f6b9ce402a564 410 TIGRFAM TIGR02006 IscS: cysteine desulfurase IscS 8 410 8.3E-224 T 21-04-2016 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250|UniPathway: UPA00266 RAF_RS03735 11acec5c4c4076a2c94f6b9ce402a564 410 PANTHER PTHR11601:SF34 11 410 6.4E-247 T 21-04-2016 RAF_RS03735 11acec5c4c4076a2c94f6b9ce402a564 410 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 8 401 55.613 T 21-04-2016 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250|UniPathway: UPA00266 RAF_RS03735 11acec5c4c4076a2c94f6b9ce402a564 410 Gene3D G3DSA:3.40.640.10 23 257 1.2E-97 T 21-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RAF_RS03735 11acec5c4c4076a2c94f6b9ce402a564 410 Gene3D G3DSA:3.90.1150.10 258 379 6.7E-46 T 21-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RAF_RS03735 11acec5c4c4076a2c94f6b9ce402a564 410 PANTHER PTHR11601 11 410 6.4E-247 T 21-04-2016 RAF_RS03735 11acec5c4c4076a2c94f6b9ce402a564 410 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 202 221 - T 21-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site RAF_RS03735 11acec5c4c4076a2c94f6b9ce402a564 410 SUPERFAMILY SSF53383 12 397 6.52E-107 T 21-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RAF_RS03735 11acec5c4c4076a2c94f6b9ce402a564 410 PIRSF PIRSF005572 9 390 5.5E-133 T 21-04-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 RAF_RS03860 0c2c92eec6911ad8dd14e384c1b615ed 241 PANTHER PTHR10434:SF11 1 241 2.2E-51 T 21-04-2016 RAF_RS03860 0c2c92eec6911ad8dd14e384c1b615ed 241 PANTHER PTHR10434 1 241 2.2E-51 T 21-04-2016 RAF_RS03860 0c2c92eec6911ad8dd14e384c1b615ed 241 SUPERFAMILY SSF69593 11 235 3.92E-33 T 21-04-2016 RAF_RS03860 0c2c92eec6911ad8dd14e384c1b615ed 241 SMART SM00563 75 188 1.3E-33 T 21-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 RAF_RS03860 0c2c92eec6911ad8dd14e384c1b615ed 241 Gene3D G3DSA:3.40.1130.10 67 221 6.7E-18 T 21-04-2016 RAF_RS03860 0c2c92eec6911ad8dd14e384c1b615ed 241 Pfam PF01553 Acyltransferase 62 185 8.3E-23 T 21-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 RAF_RS05210 3d19a5fce4a50e2ade08648095105e19 410 PANTHER PTHR24031 2 355 2.0E-165 T 21-04-2016 RAF_RS05210 3d19a5fce4a50e2ade08648095105e19 410 SMART SM00487 18 213 4.9E-58 T 21-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RAF_RS05210 3d19a5fce4a50e2ade08648095105e19 410 SUPERFAMILY SSF52540 65 349 9.41E-72 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05210 3d19a5fce4a50e2ade08648095105e19 410 Gene3D G3DSA:3.40.50.300 203 359 3.8E-53 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05210 3d19a5fce4a50e2ade08648095105e19 410 Pfam PF00270 DEAD/DEAH box helicase 23 183 1.8E-46 T 21-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RAF_RS05210 3d19a5fce4a50e2ade08648095105e19 410 Gene3D G3DSA:3.40.50.300 2 202 7.8E-76 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05210 3d19a5fce4a50e2ade08648095105e19 410 Pfam PF00271 Helicase conserved C-terminal domain 222 329 2.3E-29 T 21-04-2016 IPR001650 Helicase, C-terminal RAF_RS05210 3d19a5fce4a50e2ade08648095105e19 410 PANTHER PTHR24031:SF261 2 355 2.0E-165 T 21-04-2016 RAF_RS05210 3d19a5fce4a50e2ade08648095105e19 410 SMART SM00490 248 329 1.5E-34 T 21-04-2016 IPR001650 Helicase, C-terminal RAF_RS06560 f708e59888bf67c231b96044c35f8366 154 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 15 152 3.7E-33 T 21-04-2016 IPR005247 YbhB/YbcL RAF_RS06560 f708e59888bf67c231b96044c35f8366 154 PANTHER PTHR30289 1 154 1.9E-43 T 21-04-2016 RAF_RS06560 f708e59888bf67c231b96044c35f8366 154 Pfam PF01161 Phosphatidylethanolamine-binding protein 16 152 8.6E-37 T 21-04-2016 IPR008914 Phosphatidylethanolamine-binding protein RAF_RS06560 f708e59888bf67c231b96044c35f8366 154 SUPERFAMILY SSF49777 2 145 3.53E-45 T 21-04-2016 IPR008914 Phosphatidylethanolamine-binding protein RAF_RS06560 f708e59888bf67c231b96044c35f8366 154 Gene3D G3DSA:3.90.280.10 2 153 9.1E-52 T 21-04-2016 IPR008914 Phosphatidylethanolamine-binding protein RAF_RS03055 06bd5ccc512083941497343e4d90a782 290 ProSitePatterns PS00770 Aminotransferases class-IV signature. 189 217 - T 21-04-2016 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: REACT_13 RAF_RS03055 06bd5ccc512083941497343e4d90a782 290 SUPERFAMILY SSF56752 11 288 1.96E-76 T 21-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RAF_RS03055 06bd5ccc512083941497343e4d90a782 290 PANTHER PTHR11825 3 290 1.3E-72 T 21-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RAF_RS03055 06bd5ccc512083941497343e4d90a782 290 Gene3D G3DSA:3.30.470.10 2 111 1.2E-38 T 21-04-2016 RAF_RS03055 06bd5ccc512083941497343e4d90a782 290 PANTHER PTHR11825:SF7 3 290 1.3E-72 T 21-04-2016 RAF_RS03055 06bd5ccc512083941497343e4d90a782 290 Gene3D G3DSA:3.20.10.10 128 289 2.4E-43 T 21-04-2016 RAF_RS03055 06bd5ccc512083941497343e4d90a782 290 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 14 289 5.2E-75 T 21-04-2016 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|UniPathway: UPA00047|UniPathway: UPA00048|UniPathway: UPA00049 RAF_RS03055 06bd5ccc512083941497343e4d90a782 290 Pfam PF01063 Amino-transferase class IV 40 262 1.4E-50 T 21-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 RAF_RS03155 dba8013c7b7dfb2f9a0b4260da243f6b 325 PANTHER PTHR11728 5 309 1.2E-61 T 21-04-2016 RAF_RS03155 dba8013c7b7dfb2f9a0b4260da243f6b 325 SUPERFAMILY SSF48179 180 313 3.4E-30 T 21-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RAF_RS03155 dba8013c7b7dfb2f9a0b4260da243f6b 325 Gene3D G3DSA:3.40.50.720 1 184 1.6E-39 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS03155 dba8013c7b7dfb2f9a0b4260da243f6b 325 PANTHER PTHR11728:SF1 5 309 1.2E-61 T 21-04-2016 RAF_RS03155 dba8013c7b7dfb2f9a0b4260da243f6b 325 Gene3D G3DSA:1.10.1040.10 185 313 1.7E-31 T 21-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RAF_RS03155 dba8013c7b7dfb2f9a0b4260da243f6b 325 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 6 159 3.2E-33 T 21-04-2016 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RAF_RS03155 dba8013c7b7dfb2f9a0b4260da243f6b 325 SUPERFAMILY SSF51735 2 181 1.16E-35 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS03155 dba8013c7b7dfb2f9a0b4260da243f6b 325 PIRSF PIRSF000114 1 322 1.2E-88 T 21-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RAF_RS03155 dba8013c7b7dfb2f9a0b4260da243f6b 325 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 181 312 7.8E-29 T 21-04-2016 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RAF_RS03155 dba8013c7b7dfb2f9a0b4260da243f6b 325 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 134 154 2.4E-22 T 21-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RAF_RS03155 dba8013c7b7dfb2f9a0b4260da243f6b 325 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 199 223 2.4E-22 T 21-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RAF_RS03155 dba8013c7b7dfb2f9a0b4260da243f6b 325 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 174 198 2.4E-22 T 21-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RAF_RS03155 dba8013c7b7dfb2f9a0b4260da243f6b 325 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 9 26 2.4E-22 T 21-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RAF_RS03155 dba8013c7b7dfb2f9a0b4260da243f6b 325 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 241 258 2.4E-22 T 21-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RAF_RS03155 dba8013c7b7dfb2f9a0b4260da243f6b 325 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 5 325 27.104 T 21-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RAF_RS03155 dba8013c7b7dfb2f9a0b4260da243f6b 325 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 189 210 - T 21-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 RAF_RS04615 7e62a794b192c349c341f5b26b9976a9 211 PANTHER PTHR13707 5 209 1.2E-112 T 21-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RAF_RS04615 7e62a794b192c349c341f5b26b9976a9 211 PANTHER PTHR13707:SF23 5 209 1.2E-112 T 21-04-2016 RAF_RS04615 7e62a794b192c349c341f5b26b9976a9 211 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 3 209 6.8E-93 T 21-04-2016 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 RAF_RS04615 7e62a794b192c349c341f5b26b9976a9 211 Gene3D G3DSA:3.40.810.20 4 209 1.7E-84 T 21-04-2016 RAF_RS04615 7e62a794b192c349c341f5b26b9976a9 211 SUPERFAMILY SSF100950 3 210 1.59E-66 T 21-04-2016 RAF_RS04615 7e62a794b192c349c341f5b26b9976a9 211 Pfam PF01144 Coenzyme A transferase 9 200 7.2E-37 T 21-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RAF_RS04615 7e62a794b192c349c341f5b26b9976a9 211 SMART SM00882 6 202 2.8E-67 T 21-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 RAF_RS01640 c4de9b86b4cb98eea2b3674d0acd321c 159 SUPERFAMILY SSF54211 35 159 9.48E-46 T 21-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RAF_RS01640 c4de9b86b4cb98eea2b3674d0acd321c 159 PANTHER PTHR21569 9 159 2.5E-59 T 21-04-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 RAF_RS01640 c4de9b86b4cb98eea2b3674d0acd321c 159 Pfam PF00380 Ribosomal protein S9/S16 39 159 1.3E-45 T 21-04-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 RAF_RS01640 c4de9b86b4cb98eea2b3674d0acd321c 159 Gene3D G3DSA:3.30.230.10 34 159 3.6E-48 T 21-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAF_RS01640 c4de9b86b4cb98eea2b3674d0acd321c 159 PANTHER PTHR21569:SF1 9 159 2.5E-59 T 21-04-2016 RAF_RS01640 c4de9b86b4cb98eea2b3674d0acd321c 159 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 30 159 32.287 T 21-04-2016 IPR023035 Ribosomal protein S9, bacterial/plastid RAF_RS01640 c4de9b86b4cb98eea2b3674d0acd321c 159 ProSitePatterns PS00360 Ribosomal protein S9 signature. 98 116 - T 21-04-2016 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 RAF_RS01715 22203e64c811289e102f1793e4a2208b 80 PANTHER PTHR12735 5 77 2.1E-12 T 21-04-2016 RAF_RS01715 22203e64c811289e102f1793e4a2208b 80 SUPERFAMILY SSF82657 3 78 6.8E-16 T 21-04-2016 IPR002634 BolA protein RAF_RS01715 22203e64c811289e102f1793e4a2208b 80 PANTHER PTHR12735:SF3 5 77 2.1E-12 T 21-04-2016 RAF_RS01715 22203e64c811289e102f1793e4a2208b 80 Gene3D G3DSA:3.30.70.1500 3 79 3.4E-19 T 21-04-2016 RAF_RS01715 22203e64c811289e102f1793e4a2208b 80 PIRSF PIRSF003113 1 80 9.3E-20 T 21-04-2016 IPR002634 BolA protein RAF_RS01715 22203e64c811289e102f1793e4a2208b 80 Pfam PF01722 BolA-like protein 14 79 1.1E-19 T 21-04-2016 IPR002634 BolA protein RAF_RS05535 496d2ffa2b54e13774a8c5a09de1275e 201 Gene3D G3DSA:3.30.460.10 4 114 2.9E-32 T 21-04-2016 RAF_RS05535 496d2ffa2b54e13774a8c5a09de1275e 201 SUPERFAMILY SSF81301 3 139 5.07E-39 T 21-04-2016 RAF_RS05535 496d2ffa2b54e13774a8c5a09de1275e 201 Pfam PF04607 Region found in RelA / SpoT proteins 25 135 7.1E-29 T 21-04-2016 IPR007685 RelA/SpoT GO:0015969 RAF_RS05535 496d2ffa2b54e13774a8c5a09de1275e 201 PANTHER PTHR21262:SF0 1 137 1.1E-33 T 21-04-2016 RAF_RS05535 496d2ffa2b54e13774a8c5a09de1275e 201 SMART SM00954 24 135 6.1E-41 T 21-04-2016 IPR007685 RelA/SpoT GO:0015969 RAF_RS05535 496d2ffa2b54e13774a8c5a09de1275e 201 PANTHER PTHR21262 1 137 1.1E-33 T 21-04-2016 RAF_RS00065 a59b5490ecaafa17f1711f192fc3b8a8 309 SUPERFAMILY SSF88713 118 295 1.25E-10 T 21-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RAF_RS00065 a59b5490ecaafa17f1711f192fc3b8a8 309 Gene3D G3DSA:3.20.20.370 118 295 8.9E-8 T 21-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 RAF_RS02475 606098e6a9674c0144c165391f961b6a 391 PANTHER PTHR11993 3 386 1.6E-249 T 21-04-2016 RAF_RS02475 606098e6a9674c0144c165391f961b6a 391 PANTHER PTHR11993:SF10 3 386 1.6E-249 T 21-04-2016 RAF_RS02475 606098e6a9674c0144c165391f961b6a 391 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 121 391 2.9E-126 T 21-04-2016 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 RAF_RS02475 606098e6a9674c0144c165391f961b6a 391 SUPERFAMILY SSF56762 17 391 1.44E-141 T 21-04-2016 IPR029014 NiFe hydrogenase-like RAF_RS02475 606098e6a9674c0144c165391f961b6a 391 Gene3D G3DSA:1.10.645.10 3 232 4.6E-48 T 21-04-2016 IPR029014 NiFe hydrogenase-like RAF_RS02475 606098e6a9674c0144c165391f961b6a 391 Gene3D G3DSA:1.10.645.10 234 374 3.3E-18 T 21-04-2016 IPR029014 NiFe hydrogenase-like RAF_RS02475 606098e6a9674c0144c165391f961b6a 391 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 7 391 4.1E-195 T 21-04-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 RAF_RS02475 606098e6a9674c0144c165391f961b6a 391 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 44 55 - T 21-04-2016 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 RAF_RS02475 606098e6a9674c0144c165391f961b6a 391 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 2 391 50.029 T 21-04-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 RAF_RS02925 8c9fb09dbd9459987fe3f44b076018a7 161 Pfam PF00873 AcrB/AcrD/AcrF family 2 160 9.1E-35 T 21-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RAF_RS02925 8c9fb09dbd9459987fe3f44b076018a7 161 PANTHER PTHR32063:SF21 118 161 2.5E-52 T 21-04-2016 RAF_RS02925 8c9fb09dbd9459987fe3f44b076018a7 161 PANTHER PTHR32063:SF21 1 101 2.5E-52 T 21-04-2016 RAF_RS02925 8c9fb09dbd9459987fe3f44b076018a7 161 Gene3D G3DSA:1.20.1640.10 1 104 1.8E-23 T 21-04-2016 RAF_RS02925 8c9fb09dbd9459987fe3f44b076018a7 161 PRINTS PR00702 Acriflavin resistance protein family signature 43 66 1.1E-12 T 21-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RAF_RS02925 8c9fb09dbd9459987fe3f44b076018a7 161 PRINTS PR00702 Acriflavin resistance protein family signature 68 91 1.1E-12 T 21-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RAF_RS02925 8c9fb09dbd9459987fe3f44b076018a7 161 PANTHER PTHR32063 118 161 2.5E-52 T 21-04-2016 RAF_RS02925 8c9fb09dbd9459987fe3f44b076018a7 161 PANTHER PTHR32063 1 101 2.5E-52 T 21-04-2016 RAF_RS02925 8c9fb09dbd9459987fe3f44b076018a7 161 SUPERFAMILY SSF82866 1 96 2.22E-19 T 21-04-2016 RAF_RS05630 370335580559fadec9f99ec62034595a 149 PANTHER PTHR33371 1 143 1.2E-32 T 21-04-2016 RAF_RS05630 370335580559fadec9f99ec62034595a 149 Pfam PF02470 MlaD protein 37 114 1.2E-24 T 21-04-2016 IPR003399 Mce/MlaD RAF_RS05630 370335580559fadec9f99ec62034595a 149 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 2 144 5.1E-50 T 21-04-2016 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 RAF_RS03685 9621d0cb04077eddec9ab0d747ff7915 111 PANTHER PTHR30547 15 110 6.7E-36 T 21-04-2016 RAF_RS03685 9621d0cb04077eddec9ab0d747ff7915 111 Pfam PF06250 Protein of unknown function (DUF1016) 15 110 3.1E-31 T 21-04-2016 IPR009362 Protein of unknown function DUF1016 RAF_RS03685 9621d0cb04077eddec9ab0d747ff7915 111 PANTHER PTHR30547:SF0 15 110 6.7E-36 T 21-04-2016 RAF_RS04470 aa13b92c67e5ffff14fe3cbaba0b6675 906 Pfam PF01043 SecA preprotein cross-linking domain 231 345 2.0E-35 T 21-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 RAF_RS04470 aa13b92c67e5ffff14fe3cbaba0b6675 906 PRINTS PR00906 SecA protein signature 326 348 1.0E-66 T 21-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RAF_RS04470 aa13b92c67e5ffff14fe3cbaba0b6675 906 PRINTS PR00906 SecA protein signature 62 86 1.0E-66 T 21-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RAF_RS04470 aa13b92c67e5ffff14fe3cbaba0b6675 906 PRINTS PR00906 SecA protein signature 400 413 1.0E-66 T 21-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RAF_RS04470 aa13b92c67e5ffff14fe3cbaba0b6675 906 PRINTS PR00906 SecA protein signature 169 189 1.0E-66 T 21-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RAF_RS04470 aa13b92c67e5ffff14fe3cbaba0b6675 906 PRINTS PR00906 SecA protein signature 363 380 1.0E-66 T 21-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RAF_RS04470 aa13b92c67e5ffff14fe3cbaba0b6675 906 PRINTS PR00906 SecA protein signature 116 126 1.0E-66 T 21-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RAF_RS04470 aa13b92c67e5ffff14fe3cbaba0b6675 906 PRINTS PR00906 SecA protein signature 100 114 1.0E-66 T 21-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RAF_RS04470 aa13b92c67e5ffff14fe3cbaba0b6675 906 Gene3D G3DSA:3.40.50.300 405 608 1.8E-89 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04470 aa13b92c67e5ffff14fe3cbaba0b6675 906 Gene3D G3DSA:3.40.50.300 3 227 5.7E-125 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04470 aa13b92c67e5ffff14fe3cbaba0b6675 906 Gene3D G3DSA:3.40.50.300 356 402 5.7E-125 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04470 aa13b92c67e5ffff14fe3cbaba0b6675 906 SUPERFAMILY SSF81767 226 355 1.7E-41 T 21-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 RAF_RS04470 aa13b92c67e5ffff14fe3cbaba0b6675 906 Pfam PF07516 SecA Wing and Scaffold domain 606 815 1.7E-60 T 21-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 RAF_RS04470 aa13b92c67e5ffff14fe3cbaba0b6675 906 ProSitePatterns PS01312 SecA family signature. 487 502 - T 21-04-2016 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 RAF_RS04470 aa13b92c67e5ffff14fe3cbaba0b6675 906 Pfam PF07517 SecA DEAD-like domain 5 389 1.9E-129 T 21-04-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 RAF_RS04470 aa13b92c67e5ffff14fe3cbaba0b6675 906 SMART SM00957 5 389 9.6E-288 T 21-04-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 RAF_RS04470 aa13b92c67e5ffff14fe3cbaba0b6675 906 Gene3D G3DSA:1.10.3060.10 637 817 2.8E-52 T 21-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 RAF_RS04470 aa13b92c67e5ffff14fe3cbaba0b6675 906 Pfam PF02810 SEC-C motif 886 903 1.6E-9 T 21-04-2016 IPR004027 SEC-C motif RAF_RS04470 aa13b92c67e5ffff14fe3cbaba0b6675 906 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 27 804 0.0 T 21-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RAF_RS04470 aa13b92c67e5ffff14fe3cbaba0b6675 906 Gene3D G3DSA:3.90.1440.10 230 355 2.5E-44 T 21-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 RAF_RS04470 aa13b92c67e5ffff14fe3cbaba0b6675 906 SUPERFAMILY SSF52540 405 607 2.37E-55 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04470 aa13b92c67e5ffff14fe3cbaba0b6675 906 SMART SM00958 227 345 4.3E-67 T 21-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 RAF_RS04470 aa13b92c67e5ffff14fe3cbaba0b6675 906 SUPERFAMILY SSF81886 882 894 6.54E-74 T 21-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 RAF_RS04470 aa13b92c67e5ffff14fe3cbaba0b6675 906 SUPERFAMILY SSF81886 609 827 6.54E-74 T 21-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 RAF_RS04470 aa13b92c67e5ffff14fe3cbaba0b6675 906 SUPERFAMILY SSF52540 355 402 2.37E-85 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04470 aa13b92c67e5ffff14fe3cbaba0b6675 906 SUPERFAMILY SSF52540 3 227 2.37E-85 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04470 aa13b92c67e5ffff14fe3cbaba0b6675 906 Hamap MF_01382 Protein translocase subunit SecA [secA]. 4 819 19.575 T 21-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RAF_RS04470 aa13b92c67e5ffff14fe3cbaba0b6675 906 PANTHER PTHR30612 539 906 0.0 T 21-04-2016 RAF_RS04470 aa13b92c67e5ffff14fe3cbaba0b6675 906 PANTHER PTHR30612 1 507 0.0 T 21-04-2016 RAF_RS03270 0730d7f145730fbd84ff494777908630 340 Gene3D G3DSA:3.50.50.60 125 241 2.7E-18 T 21-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAF_RS03270 0730d7f145730fbd84ff494777908630 340 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 109 117 1.75E-18 T 21-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAF_RS03270 0730d7f145730fbd84ff494777908630 340 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 203 219 1.75E-18 T 21-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAF_RS03270 0730d7f145730fbd84ff494777908630 340 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 5 27 1.75E-18 T 21-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAF_RS03270 0730d7f145730fbd84ff494777908630 340 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 148 172 1.75E-18 T 21-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAF_RS03270 0730d7f145730fbd84ff494777908630 340 Gene3D G3DSA:3.50.50.60 3 123 1.7E-39 T 21-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAF_RS03270 0730d7f145730fbd84ff494777908630 340 Gene3D G3DSA:3.50.50.60 247 320 1.7E-39 T 21-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAF_RS03270 0730d7f145730fbd84ff494777908630 340 PANTHER PTHR22912 1 305 4.9E-93 T 21-04-2016 RAF_RS03270 0730d7f145730fbd84ff494777908630 340 Hamap MF_01685 Ferredoxin--NADP reductase. 3 329 40.645 T 21-04-2016 IPR022890 Ferredoxin--NADP reductase, type 2 GO:0004324|GO:0055114 KEGG: 00195+1.18.1.2|MetaCyc: PWY-101|MetaCyc: PWY-7230 RAF_RS03270 0730d7f145730fbd84ff494777908630 340 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 288 6.19E-19 T 21-04-2016 RAF_RS03270 0730d7f145730fbd84ff494777908630 340 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 6.19E-19 T 21-04-2016 RAF_RS03270 0730d7f145730fbd84ff494777908630 340 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 152 170 6.19E-19 T 21-04-2016 RAF_RS03270 0730d7f145730fbd84ff494777908630 340 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 108 126 6.19E-19 T 21-04-2016 RAF_RS03270 0730d7f145730fbd84ff494777908630 340 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 294 2.8E-31 T 21-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAF_RS03270 0730d7f145730fbd84ff494777908630 340 SUPERFAMILY SSF51905 1 304 3.35E-40 T 21-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAF_RS03270 0730d7f145730fbd84ff494777908630 340 PANTHER PTHR22912:SF158 1 305 4.9E-93 T 21-04-2016 RAF_RS03350 0457f22a4557c29f8c25a77b14f3bd14 360 SUPERFAMILY SSF52540 194 318 2.62E-8 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS03350 0457f22a4557c29f8c25a77b14f3bd14 360 SUPERFAMILY SSF52540 56 98 2.62E-8 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS03350 0457f22a4557c29f8c25a77b14f3bd14 360 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 60 357 25.897 T 21-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 RAF_RS03350 0457f22a4557c29f8c25a77b14f3bd14 360 SUPERFAMILY SSF52540 60 210 4.05E-21 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS03350 0457f22a4557c29f8c25a77b14f3bd14 360 Pfam PF01715 IPP transferase 93 337 1.9E-65 T 21-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 RAF_RS03350 0457f22a4557c29f8c25a77b14f3bd14 360 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 61 339 6.5E-77 T 21-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 RAF_RS03350 0457f22a4557c29f8c25a77b14f3bd14 360 PANTHER PTHR11088 52 338 2.4E-83 T 21-04-2016 RAF_RS03350 0457f22a4557c29f8c25a77b14f3bd14 360 Gene3D G3DSA:1.10.287.890 256 337 6.7E-24 T 21-04-2016 RAF_RS03350 0457f22a4557c29f8c25a77b14f3bd14 360 Gene3D G3DSA:3.40.50.300 56 227 2.2E-48 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06795 6e329f1ff40233acdfd4ebc0d6c93f58 212 PANTHER PTHR35869 1 200 2.0E-12 T 21-04-2016 RAF_RS06795 6e329f1ff40233acdfd4ebc0d6c93f58 212 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 36 189 5.7E-31 T 21-04-2016 IPR004564 Outer membrane lipoprotein carrier protein LolA-like RAF_RS06795 6e329f1ff40233acdfd4ebc0d6c93f58 212 Gene3D G3DSA:2.50.20.10 27 192 3.0E-21 T 21-04-2016 RAF_RS06795 6e329f1ff40233acdfd4ebc0d6c93f58 212 SUPERFAMILY SSF89392 27 192 8.63E-26 T 21-04-2016 IPR029046 Lipoprotein localisation LolA/LolB/LppX RAF_RS00990 e9d516324b964ea8f7f8eec0282eef29 159 PANTHER PTHR30466 4 159 3.1E-43 T 21-04-2016 RAF_RS00990 e9d516324b964ea8f7f8eec0282eef29 159 Pfam PF01613 Flavin reductase like domain 14 158 3.8E-38 T 21-04-2016 IPR002563 Flavin reductase like domain GO:0010181 RAF_RS00990 e9d516324b964ea8f7f8eec0282eef29 159 Gene3D G3DSA:2.30.110.10 7 159 4.8E-53 T 21-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RAF_RS00990 e9d516324b964ea8f7f8eec0282eef29 159 PANTHER PTHR30466:SF1 4 159 3.1E-43 T 21-04-2016 RAF_RS00990 e9d516324b964ea8f7f8eec0282eef29 159 SUPERFAMILY SSF50475 7 157 1.08E-47 T 21-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RAF_RS00990 e9d516324b964ea8f7f8eec0282eef29 159 SMART SM00903 14 158 3.6E-47 T 21-04-2016 IPR002563 Flavin reductase like domain GO:0010181 RAF_RS04070 9d20ad6e797a107a032acd3e0054483b 330 PANTHER PTHR11458 1 330 5.2E-163 T 21-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RAF_RS04070 9d20ad6e797a107a032acd3e0054483b 330 SUPERFAMILY SSF51569 2 326 2.64E-131 T 21-04-2016 RAF_RS04070 9d20ad6e797a107a032acd3e0054483b 330 SMART SM01004 2 324 1.6E-208 T 21-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RAF_RS04070 9d20ad6e797a107a032acd3e0054483b 330 PIRSF PIRSF001415 1 327 1.6E-144 T 21-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RAF_RS04070 9d20ad6e797a107a032acd3e0054483b 330 Gene3D G3DSA:3.20.20.70 2 327 6.8E-139 T 21-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RAF_RS04070 9d20ad6e797a107a032acd3e0054483b 330 Pfam PF00490 Delta-aminolevulinic acid dehydratase 5 322 8.0E-132 T 21-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RAF_RS04070 9d20ad6e797a107a032acd3e0054483b 330 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 152 171 2.0E-53 T 21-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RAF_RS04070 9d20ad6e797a107a032acd3e0054483b 330 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 243 259 2.0E-53 T 21-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RAF_RS04070 9d20ad6e797a107a032acd3e0054483b 330 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 298 317 2.0E-53 T 21-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RAF_RS04070 9d20ad6e797a107a032acd3e0054483b 330 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 190 209 2.0E-53 T 21-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RAF_RS04070 9d20ad6e797a107a032acd3e0054483b 330 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 268 283 2.0E-53 T 21-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RAF_RS04070 9d20ad6e797a107a032acd3e0054483b 330 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 122 136 2.0E-53 T 21-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RAF_RS04820 10cbe044577086b241c7c1300bc52cc2 66 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 56 14.923 T 21-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 RAF_RS04820 10cbe044577086b241c7c1300bc52cc2 66 Pfam PF01165 Ribosomal protein S21 4 56 2.8E-15 T 21-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 RAF_RS04820 10cbe044577086b241c7c1300bc52cc2 66 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 3 58 4.0E-21 T 21-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 RAF_RS04820 10cbe044577086b241c7c1300bc52cc2 66 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 15 50 4.0E-13 T 21-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 RAF_RS04895 ef6541fc67fd3b2a53b1a5d787c69f2c 289 PANTHER PTHR10108:SF902 99 276 2.0E-61 T 21-04-2016 RAF_RS04895 ef6541fc67fd3b2a53b1a5d787c69f2c 289 PANTHER PTHR10108:SF902 2 53 2.0E-61 T 21-04-2016 RAF_RS04895 ef6541fc67fd3b2a53b1a5d787c69f2c 289 Pfam PF13489 Methyltransferase domain 99 244 1.1E-17 T 21-04-2016 RAF_RS04895 ef6541fc67fd3b2a53b1a5d787c69f2c 289 PANTHER PTHR10108 99 276 2.0E-61 T 21-04-2016 RAF_RS04895 ef6541fc67fd3b2a53b1a5d787c69f2c 289 PANTHER PTHR10108 2 53 2.0E-61 T 21-04-2016 RAF_RS04895 ef6541fc67fd3b2a53b1a5d787c69f2c 289 SUPERFAMILY SSF53335 14 44 1.0E-39 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS04895 ef6541fc67fd3b2a53b1a5d787c69f2c 289 SUPERFAMILY SSF53335 98 268 1.0E-39 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS04895 ef6541fc67fd3b2a53b1a5d787c69f2c 289 Gene3D G3DSA:3.40.50.150 30 44 8.6E-42 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS04895 ef6541fc67fd3b2a53b1a5d787c69f2c 289 Gene3D G3DSA:3.40.50.150 99 276 8.6E-42 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS04895 ef6541fc67fd3b2a53b1a5d787c69f2c 289 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 8 277 2.2E-87 T 21-04-2016 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|UniPathway: UPA00232 RAF_RS04895 ef6541fc67fd3b2a53b1a5d787c69f2c 289 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 6 283 36.204 T 21-04-2016 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|UniPathway: UPA00232 RAF_RS04895 ef6541fc67fd3b2a53b1a5d787c69f2c 289 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 50 97 7.5E-26 T 21-04-2016 IPR005728 Rickettsial palindromic element RAF_RS02880 a6235c2f491d23564f35a50ca590b6c0 500 SUPERFAMILY SSF53244 351 487 2.29E-33 T 21-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RAF_RS02880 a6235c2f491d23564f35a50ca590b6c0 500 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 7 490 31.189 T 21-04-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RAF_RS02880 a6235c2f491d23564f35a50ca590b6c0 500 Pfam PF08245 Mur ligase middle domain 109 240 1.3E-29 T 21-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RAF_RS02880 a6235c2f491d23564f35a50ca590b6c0 500 Gene3D G3DSA:3.40.50.720 5 90 1.7E-7 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS02880 a6235c2f491d23564f35a50ca590b6c0 500 PANTHER PTHR23135:SF2 1 272 4.0E-121 T 21-04-2016 RAF_RS02880 a6235c2f491d23564f35a50ca590b6c0 500 PANTHER PTHR23135:SF2 301 486 4.0E-121 T 21-04-2016 RAF_RS02880 a6235c2f491d23564f35a50ca590b6c0 500 Gene3D G3DSA:3.90.190.20 356 486 2.0E-35 T 21-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RAF_RS02880 a6235c2f491d23564f35a50ca590b6c0 500 SUPERFAMILY SSF51984 7 92 1.07E-9 T 21-04-2016 RAF_RS02880 a6235c2f491d23564f35a50ca590b6c0 500 TIGRFAM TIGR03775 RPE3: rickettsial palindromic element RPE3 domain 265 309 1.9E-20 T 21-04-2016 IPR022437 Rickettsia palindromic element RPE3 RAF_RS02880 a6235c2f491d23564f35a50ca590b6c0 500 PANTHER PTHR23135 1 272 4.0E-121 T 21-04-2016 RAF_RS02880 a6235c2f491d23564f35a50ca590b6c0 500 PANTHER PTHR23135 301 486 4.0E-121 T 21-04-2016 RAF_RS02880 a6235c2f491d23564f35a50ca590b6c0 500 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 8 488 4.6E-127 T 21-04-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RAF_RS02880 a6235c2f491d23564f35a50ca590b6c0 500 Gene3D G3DSA:3.40.1190.10 101 244 8.9E-60 T 21-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RAF_RS02880 a6235c2f491d23564f35a50ca590b6c0 500 Gene3D G3DSA:3.40.1190.10 283 355 8.9E-60 T 21-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RAF_RS02880 a6235c2f491d23564f35a50ca590b6c0 500 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 107 130 - T 21-04-2016 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 RAF_RS02880 a6235c2f491d23564f35a50ca590b6c0 500 SUPERFAMILY SSF53623 67 235 8.93E-47 T 21-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RAF_RS02880 a6235c2f491d23564f35a50ca590b6c0 500 SUPERFAMILY SSF53623 280 364 8.93E-47 T 21-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RAF_RS05145 07f71830e42fad9ef7189c59bdfefbe7 394 Gene3D G3DSA:2.40.30.10 300 392 1.5E-46 T 21-04-2016 RAF_RS05145 07f71830e42fad9ef7189c59bdfefbe7 394 PANTHER PTHR23115:SF112 1 392 2.5E-251 T 21-04-2016 RAF_RS05145 07f71830e42fad9ef7189c59bdfefbe7 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 60.517 T 21-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 RAF_RS05145 07f71830e42fad9ef7189c59bdfefbe7 394 Pfam PF00009 Elongation factor Tu GTP binding domain 10 201 3.2E-61 T 21-04-2016 RAF_RS05145 07f71830e42fad9ef7189c59bdfefbe7 394 Gene3D G3DSA:3.40.50.300 4 209 8.6E-72 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05145 07f71830e42fad9ef7189c59bdfefbe7 394 SUPERFAMILY SSF52540 9 226 6.54E-64 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05145 07f71830e42fad9ef7189c59bdfefbe7 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 154 8.7E-16 T 21-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RAF_RS05145 07f71830e42fad9ef7189c59bdfefbe7 394 Gene3D G3DSA:2.40.30.10 210 298 4.1E-38 T 21-04-2016 RAF_RS05145 07f71830e42fad9ef7189c59bdfefbe7 394 PANTHER PTHR23115 1 392 2.5E-251 T 21-04-2016 RAF_RS05145 07f71830e42fad9ef7189c59bdfefbe7 394 SUPERFAMILY SSF50465 302 394 2.33E-36 T 21-04-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RAF_RS05145 07f71830e42fad9ef7189c59bdfefbe7 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 392 1.8E-229 T 21-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 RAF_RS05145 07f71830e42fad9ef7189c59bdfefbe7 394 SUPERFAMILY SSF50447 205 301 2.75E-31 T 21-04-2016 IPR009000 Translation protein, beta-barrel domain RAF_RS05145 07f71830e42fad9ef7189c59bdfefbe7 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 21-04-2016 IPR031157 Tr-type G domain, conserved site RAF_RS05145 07f71830e42fad9ef7189c59bdfefbe7 394 Pfam PF03144 Elongation factor Tu domain 2 225 293 8.2E-19 T 21-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RAF_RS05145 07f71830e42fad9ef7189c59bdfefbe7 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 1.4E-33 T 21-04-2016 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal RAF_RS05145 07f71830e42fad9ef7189c59bdfefbe7 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 7.4E-25 T 21-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAF_RS05145 07f71830e42fad9ef7189c59bdfefbe7 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 7.4E-25 T 21-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAF_RS05145 07f71830e42fad9ef7189c59bdfefbe7 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 7.4E-25 T 21-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAF_RS05145 07f71830e42fad9ef7189c59bdfefbe7 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 7.4E-25 T 21-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAF_RS05145 07f71830e42fad9ef7189c59bdfefbe7 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 7.4E-25 T 21-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAF_RS01630 3e2a14f606f6dae24979a1d32045a186 414 SMART SM00564 259 290 6.9E-4 T 21-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RAF_RS01630 3e2a14f606f6dae24979a1d32045a186 414 SMART SM00564 296 328 130.0 T 21-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RAF_RS01630 3e2a14f606f6dae24979a1d32045a186 414 SMART SM00564 160 192 170.0 T 21-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RAF_RS01630 3e2a14f606f6dae24979a1d32045a186 414 SMART SM00564 75 106 89.0 T 21-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RAF_RS01630 3e2a14f606f6dae24979a1d32045a186 414 SMART SM00564 206 237 6.2E-5 T 21-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RAF_RS01630 3e2a14f606f6dae24979a1d32045a186 414 SMART SM00564 119 151 82.0 T 21-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RAF_RS01630 3e2a14f606f6dae24979a1d32045a186 414 Gene3D G3DSA:2.140.10.10 70 240 8.0E-26 T 21-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain RAF_RS01630 3e2a14f606f6dae24979a1d32045a186 414 Gene3D G3DSA:2.140.10.10 254 410 3.1E-10 T 21-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain RAF_RS01630 3e2a14f606f6dae24979a1d32045a186 414 Pfam PF13360 PQQ-like domain 89 323 4.3E-29 T 21-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat RAF_RS01630 3e2a14f606f6dae24979a1d32045a186 414 SUPERFAMILY SSF50998 73 374 4.32E-43 T 21-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily RAF_RS06790 6010604aa484a72674565bb831b6bb66 374 PANTHER PTHR10160 1 368 8.4E-151 T 21-04-2016 RAF_RS06790 6010604aa484a72674565bb831b6bb66 374 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 147 369 2.0E-69 T 21-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RAF_RS06790 6010604aa484a72674565bb831b6bb66 374 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 6 142 3.3E-35 T 21-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RAF_RS06790 6010604aa484a72674565bb831b6bb66 374 PANTHER PTHR10160:SF19 1 368 8.4E-151 T 21-04-2016 RAF_RS06790 6010604aa484a72674565bb831b6bb66 374 SMART SM01002 152 316 3.8E-79 T 21-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RAF_RS06790 6010604aa484a72674565bb831b6bb66 374 Gene3D G3DSA:3.40.50.1770 3 193 7.5E-58 T 21-04-2016 RAF_RS06790 6010604aa484a72674565bb831b6bb66 374 Gene3D G3DSA:3.40.50.1770 194 367 3.4E-32 T 21-04-2016 RAF_RS06790 6010604aa484a72674565bb831b6bb66 374 SUPERFAMILY SSF51735 144 320 1.26E-38 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS06790 6010604aa484a72674565bb831b6bb66 374 SMART SM01003 4 143 8.7E-47 T 21-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RAF_RS06790 6010604aa484a72674565bb831b6bb66 374 SUPERFAMILY SSF52283 1 173 8.08E-44 T 21-04-2016 RAF_RS01535 1ad5d1dfa62cdab9afdea13e9b15fadc 635 Gene3D G3DSA:3.30.54.20 130 185 5.4E-23 T 21-04-2016 RAF_RS01535 1ad5d1dfa62cdab9afdea13e9b15fadc 635 Gene3D G3DSA:3.40.50.800 530 633 1.1E-28 T 21-04-2016 IPR004154 Anticodon-binding RAF_RS01535 1ad5d1dfa62cdab9afdea13e9b15fadc 635 PANTHER PTHR11451:SF31 1 633 0.0 T 21-04-2016 RAF_RS01535 1ad5d1dfa62cdab9afdea13e9b15fadc 635 Gene3D G3DSA:3.30.930.10 241 529 4.4E-121 T 21-04-2016 RAF_RS01535 1ad5d1dfa62cdab9afdea13e9b15fadc 635 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 169 218 1.2E-14 T 21-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 RAF_RS01535 1ad5d1dfa62cdab9afdea13e9b15fadc 635 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 72 630 1.2E-215 T 21-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RAF_RS01535 1ad5d1dfa62cdab9afdea13e9b15fadc 635 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 66 633 33.364 T 21-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RAF_RS01535 1ad5d1dfa62cdab9afdea13e9b15fadc 635 SUPERFAMILY SSF55681 242 525 7.66E-100 T 21-04-2016 RAF_RS01535 1ad5d1dfa62cdab9afdea13e9b15fadc 635 SMART SM00863 169 218 8.1E-25 T 21-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 RAF_RS01535 1ad5d1dfa62cdab9afdea13e9b15fadc 635 Gene3D G3DSA:3.10.20.30 1 64 9.0E-22 T 21-04-2016 IPR012675 Beta-grasp domain RAF_RS01535 1ad5d1dfa62cdab9afdea13e9b15fadc 635 Gene3D G3DSA:3.30.980.10 187 223 4.4E-39 T 21-04-2016 RAF_RS01535 1ad5d1dfa62cdab9afdea13e9b15fadc 635 Gene3D G3DSA:3.30.980.10 66 129 4.4E-39 T 21-04-2016 RAF_RS01535 1ad5d1dfa62cdab9afdea13e9b15fadc 635 SUPERFAMILY SSF55186 63 240 2.88E-63 T 21-04-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 RAF_RS01535 1ad5d1dfa62cdab9afdea13e9b15fadc 635 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 321 528 2.1E-41 T 21-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS01535 1ad5d1dfa62cdab9afdea13e9b15fadc 635 PRINTS PR01047 Threonyl-tRNA synthetase signature 361 384 3.3E-53 T 21-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RAF_RS01535 1ad5d1dfa62cdab9afdea13e9b15fadc 635 PRINTS PR01047 Threonyl-tRNA synthetase signature 328 356 3.3E-53 T 21-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RAF_RS01535 1ad5d1dfa62cdab9afdea13e9b15fadc 635 PRINTS PR01047 Threonyl-tRNA synthetase signature 506 519 3.3E-53 T 21-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RAF_RS01535 1ad5d1dfa62cdab9afdea13e9b15fadc 635 PRINTS PR01047 Threonyl-tRNA synthetase signature 463 491 3.3E-53 T 21-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RAF_RS01535 1ad5d1dfa62cdab9afdea13e9b15fadc 635 PRINTS PR01047 Threonyl-tRNA synthetase signature 533 545 3.3E-53 T 21-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RAF_RS01535 1ad5d1dfa62cdab9afdea13e9b15fadc 635 SUPERFAMILY SSF52954 528 632 2.72E-28 T 21-04-2016 IPR004154 Anticodon-binding RAF_RS01535 1ad5d1dfa62cdab9afdea13e9b15fadc 635 PANTHER PTHR11451 1 633 0.0 T 21-04-2016 RAF_RS01535 1ad5d1dfa62cdab9afdea13e9b15fadc 635 Pfam PF02824 TGS domain 2 61 6.0E-12 T 21-04-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 RAF_RS01535 1ad5d1dfa62cdab9afdea13e9b15fadc 635 SUPERFAMILY SSF81271 2 61 3.27E-15 T 21-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 RAF_RS01535 1ad5d1dfa62cdab9afdea13e9b15fadc 635 Pfam PF03129 Anticodon binding domain 540 629 5.4E-20 T 21-04-2016 IPR004154 Anticodon-binding RAF_RS03360 153f64f304e353bb57d5c230e6d7644d 240 Gene3D G3DSA:3.40.50.300 3 233 6.1E-64 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS03360 153f64f304e353bb57d5c230e6d7644d 240 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 21-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAF_RS03360 153f64f304e353bb57d5c230e6d7644d 240 SUPERFAMILY SSF52540 4 235 2.6E-61 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS03360 153f64f304e353bb57d5c230e6d7644d 240 PANTHER PTHR24220 5 237 1.3E-120 T 21-04-2016 RAF_RS03360 153f64f304e353bb57d5c230e6d7644d 240 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 4 239 7.6E-113 T 21-04-2016 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 RAF_RS03360 153f64f304e353bb57d5c230e6d7644d 240 SMART SM00382 28 215 1.6E-8 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS03360 153f64f304e353bb57d5c230e6d7644d 240 PANTHER PTHR24220:SF497 5 237 1.3E-120 T 21-04-2016 RAF_RS03360 153f64f304e353bb57d5c230e6d7644d 240 Pfam PF00005 ABC transporter 19 164 1.2E-31 T 21-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAF_RS06260 75a68a916e4db6183ea0fd8b3d291487 323 PANTHER PTHR11693 1 323 4.5E-88 T 21-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RAF_RS06260 75a68a916e4db6183ea0fd8b3d291487 323 Gene3D G3DSA:1.10.287.80 257 323 1.3E-46 T 21-04-2016 RAF_RS06260 75a68a916e4db6183ea0fd8b3d291487 323 Gene3D G3DSA:1.10.287.80 3 36 1.3E-46 T 21-04-2016 RAF_RS06260 75a68a916e4db6183ea0fd8b3d291487 323 PRINTS PR00126 ATP synthase gamma subunit signature 170 187 2.97E-27 T 21-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RAF_RS06260 75a68a916e4db6183ea0fd8b3d291487 323 PRINTS PR00126 ATP synthase gamma subunit signature 301 322 2.97E-27 T 21-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RAF_RS06260 75a68a916e4db6183ea0fd8b3d291487 323 PRINTS PR00126 ATP synthase gamma subunit signature 270 289 2.97E-27 T 21-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RAF_RS06260 75a68a916e4db6183ea0fd8b3d291487 323 PRINTS PR00126 ATP synthase gamma subunit signature 77 96 2.97E-27 T 21-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RAF_RS06260 75a68a916e4db6183ea0fd8b3d291487 323 Pfam PF00231 ATP synthase 3 322 7.7E-73 T 21-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RAF_RS06260 75a68a916e4db6183ea0fd8b3d291487 323 Gene3D G3DSA:3.40.1380.10 70 195 2.0E-33 T 21-04-2016 RAF_RS06260 75a68a916e4db6183ea0fd8b3d291487 323 TIGRFAM TIGR03774 RPE2: rickettsial palindromic element RPE2 domain 208 242 1.1E-21 T 21-04-2016 IPR022436 Rickettsia palindromic element RPE2 RAF_RS06260 75a68a916e4db6183ea0fd8b3d291487 323 SUPERFAMILY SSF52943 3 202 4.19E-75 T 21-04-2016 IPR023633 ATPase, F1 complex, gamma subunit domain RAF_RS06260 75a68a916e4db6183ea0fd8b3d291487 323 SUPERFAMILY SSF52943 240 323 4.19E-75 T 21-04-2016 IPR023633 ATPase, F1 complex, gamma subunit domain RAF_RS06260 75a68a916e4db6183ea0fd8b3d291487 323 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 323 29.141 T 21-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RAF_RS06260 75a68a916e4db6183ea0fd8b3d291487 323 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 323 2.9E-80 T 21-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RAF_RS06935 1bcdacb92ed341cf4c124b6d6ce44258 56 Pfam PF00471 Ribosomal protein L33 9 54 1.6E-13 T 21-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS06935 1bcdacb92ed341cf4c124b6d6ce44258 56 SUPERFAMILY SSF57829 3 54 3.17E-15 T 21-04-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 RAF_RS06935 1bcdacb92ed341cf4c124b6d6ce44258 56 PANTHER PTHR15238 1 56 1.1E-20 T 21-04-2016 RAF_RS06935 1bcdacb92ed341cf4c124b6d6ce44258 56 ProSitePatterns PS00582 Ribosomal protein L33 signature. 22 41 - T 21-04-2016 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS06935 1bcdacb92ed341cf4c124b6d6ce44258 56 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 2 54 12.26 T 21-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS06935 1bcdacb92ed341cf4c124b6d6ce44258 56 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 56 2.1E-25 T 21-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS06935 1bcdacb92ed341cf4c124b6d6ce44258 56 PANTHER PTHR15238:SF1 1 56 1.1E-20 T 21-04-2016 RAF_RS01500 a5fb8e88be8cabf34d4af863e8bb546e 339 PANTHER PTHR30365:SF4 3 332 6.0E-140 T 21-04-2016 RAF_RS01500 a5fb8e88be8cabf34d4af863e8bb546e 339 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 10 218 8.2E-43 T 21-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RAF_RS01500 a5fb8e88be8cabf34d4af863e8bb546e 339 PANTHER PTHR30365 3 332 6.0E-140 T 21-04-2016 RAF_RS01500 a5fb8e88be8cabf34d4af863e8bb546e 339 PIRSF PIRSF000267 6 338 2.9E-88 T 21-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RAF_RS01500 a5fb8e88be8cabf34d4af863e8bb546e 339 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 10 329 4.6E-94 T 21-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RAF_RS05550 ba1fb52e80e8ecfe9d51204341160b1e 95 SUPERFAMILY SSF47729 3 92 1.46E-19 T 21-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RAF_RS05550 ba1fb52e80e8ecfe9d51204341160b1e 95 PANTHER PTHR33175 3 91 1.1E-15 T 21-04-2016 RAF_RS05550 ba1fb52e80e8ecfe9d51204341160b1e 95 Gene3D G3DSA:4.10.520.10 4 92 2.0E-19 T 21-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RAF_RS05550 ba1fb52e80e8ecfe9d51204341160b1e 95 Pfam PF00216 Bacterial DNA-binding protein 4 91 6.5E-18 T 21-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RAF_RS05550 ba1fb52e80e8ecfe9d51204341160b1e 95 SMART SM00411 3 91 1.1E-22 T 21-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RAF_RS06060 7b522020ebc9e7051ca162b55eb79a5e 346 Gene3D G3DSA:3.30.420.40 266 319 5.2E-34 T 21-04-2016 RAF_RS06060 7b522020ebc9e7051ca162b55eb79a5e 346 Gene3D G3DSA:3.30.420.40 161 187 5.2E-34 T 21-04-2016 RAF_RS06060 7b522020ebc9e7051ca162b55eb79a5e 346 Pfam PF06723 MreB/Mbl protein 12 339 5.2E-147 T 21-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 RAF_RS06060 7b522020ebc9e7051ca162b55eb79a5e 346 PANTHER PTHR19375 9 329 5.6E-158 T 21-04-2016 RAF_RS06060 7b522020ebc9e7051ca162b55eb79a5e 346 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 9 339 9.2E-165 T 21-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 RAF_RS06060 7b522020ebc9e7051ca162b55eb79a5e 346 SUPERFAMILY SSF53067 12 149 6.79E-36 T 21-04-2016 RAF_RS06060 7b522020ebc9e7051ca162b55eb79a5e 346 Gene3D G3DSA:3.30.420.40 13 160 2.1E-39 T 21-04-2016 RAF_RS06060 7b522020ebc9e7051ca162b55eb79a5e 346 SUPERFAMILY SSF53067 150 336 2.85E-47 T 21-04-2016 RAF_RS06060 7b522020ebc9e7051ca162b55eb79a5e 346 Gene3D G3DSA:3.90.640.10 188 262 2.6E-30 T 21-04-2016 RAF_RS06060 7b522020ebc9e7051ca162b55eb79a5e 346 PANTHER PTHR19375:SF117 9 329 5.6E-158 T 21-04-2016 RAF_RS06060 7b522020ebc9e7051ca162b55eb79a5e 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 188 208 9.3E-58 T 21-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 RAF_RS06060 7b522020ebc9e7051ca162b55eb79a5e 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 70 93 9.3E-58 T 21-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 RAF_RS06060 7b522020ebc9e7051ca162b55eb79a5e 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 133 152 9.3E-58 T 21-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 RAF_RS06060 7b522020ebc9e7051ca162b55eb79a5e 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 50 68 9.3E-58 T 21-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 RAF_RS06060 7b522020ebc9e7051ca162b55eb79a5e 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 303 329 9.3E-58 T 21-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 RAF_RS02115 ac6ecd6fdd85d6709210531ce4b17eee 444 Hamap MF_00671 Protein TolB [tolB]. 2 439 33.488 T 21-04-2016 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 RAF_RS02115 ac6ecd6fdd85d6709210531ce4b17eee 444 Pfam PF07676 WD40-like Beta Propeller Repeat 325 353 2.2E-4 T 21-04-2016 IPR011659 WD40-like Beta Propeller RAF_RS02115 ac6ecd6fdd85d6709210531ce4b17eee 444 Pfam PF07676 WD40-like Beta Propeller Repeat 282 316 3.8E-12 T 21-04-2016 IPR011659 WD40-like Beta Propeller RAF_RS02115 ac6ecd6fdd85d6709210531ce4b17eee 444 Pfam PF07676 WD40-like Beta Propeller Repeat 242 271 3.8E-4 T 21-04-2016 IPR011659 WD40-like Beta Propeller RAF_RS02115 ac6ecd6fdd85d6709210531ce4b17eee 444 Gene3D G3DSA:2.130.10.10 152 440 1.5E-71 T 21-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 RAF_RS02115 ac6ecd6fdd85d6709210531ce4b17eee 444 SUPERFAMILY SSF52964 28 160 3.14E-33 T 21-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 RAF_RS02115 ac6ecd6fdd85d6709210531ce4b17eee 444 SUPERFAMILY SSF69304 153 440 5.89E-51 T 21-04-2016 RAF_RS02115 ac6ecd6fdd85d6709210531ce4b17eee 444 Gene3D G3DSA:3.40.50.10070 22 151 1.3E-43 T 21-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 RAF_RS02115 ac6ecd6fdd85d6709210531ce4b17eee 444 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 14 440 1.3E-124 T 21-04-2016 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 RAF_RS02115 ac6ecd6fdd85d6709210531ce4b17eee 444 Pfam PF04052 TolB amino-terminal domain 22 128 5.0E-28 T 21-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 RAF_RS02115 ac6ecd6fdd85d6709210531ce4b17eee 444 PANTHER PTHR36842 4 444 6.9E-44 T 21-04-2016 RAF_RS02205 870d44f16618f4e1a65c307e5947bd0b 584 PANTHER PTHR24222:SF0 8 568 2.1E-208 T 21-04-2016 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 RAF_RS02205 870d44f16618f4e1a65c307e5947bd0b 584 SUPERFAMILY SSF52540 326 571 1.97E-62 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02205 870d44f16618f4e1a65c307e5947bd0b 584 Gene3D G3DSA:1.20.1560.10 20 319 5.9E-30 T 21-04-2016 RAF_RS02205 870d44f16618f4e1a65c307e5947bd0b 584 TIGRFAM TIGR01842 type_I_sec_PrtD: type I secretion system ATPase 19 571 2.6E-248 T 21-04-2016 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 RAF_RS02205 870d44f16618f4e1a65c307e5947bd0b 584 Pfam PF00664 ABC transporter transmembrane region 26 283 1.9E-9 T 21-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RAF_RS02205 870d44f16618f4e1a65c307e5947bd0b 584 SMART SM00382 371 558 3.6E-13 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS02205 870d44f16618f4e1a65c307e5947bd0b 584 SUPERFAMILY SSF90123 19 319 2.22E-34 T 21-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RAF_RS02205 870d44f16618f4e1a65c307e5947bd0b 584 Pfam PF00005 ABC transporter 362 510 6.5E-31 T 21-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAF_RS02205 870d44f16618f4e1a65c307e5947bd0b 584 Gene3D G3DSA:3.40.50.300 359 572 9.3E-61 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02205 870d44f16618f4e1a65c307e5947bd0b 584 PANTHER PTHR24222 8 568 2.1E-208 T 21-04-2016 RAF_RS02205 870d44f16618f4e1a65c307e5947bd0b 584 ProSitePatterns PS00211 ABC transporters family signature. 483 497 - T 21-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAF_RS00185 ceb15a01b0477de35ee02a88b91c17bf 164 Pfam PF00186 Dihydrofolate reductase 6 151 2.5E-31 T 21-04-2016 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0006545|GO:0009165|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RAF_RS00185 ceb15a01b0477de35ee02a88b91c17bf 164 PRINTS PR00070 Dihydrofolate reductase signature 31 39 1.8E-10 T 21-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RAF_RS00185 ceb15a01b0477de35ee02a88b91c17bf 164 PRINTS PR00070 Dihydrofolate reductase signature 44 55 1.8E-10 T 21-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RAF_RS00185 ceb15a01b0477de35ee02a88b91c17bf 164 PRINTS PR00070 Dihydrofolate reductase signature 99 113 1.8E-10 T 21-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RAF_RS00185 ceb15a01b0477de35ee02a88b91c17bf 164 PRINTS PR00070 Dihydrofolate reductase signature 17 27 1.8E-10 T 21-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 RAF_RS00185 ceb15a01b0477de35ee02a88b91c17bf 164 PANTHER PTHR22778:SF16 4 137 7.1E-23 T 21-04-2016 RAF_RS00185 ceb15a01b0477de35ee02a88b91c17bf 164 PANTHER PTHR22778 4 137 7.1E-23 T 21-04-2016 RAF_RS00185 ceb15a01b0477de35ee02a88b91c17bf 164 Gene3D G3DSA:3.40.430.10 1 162 1.1E-49 T 21-04-2016 IPR024072 Dihydrofolate reductase-like domain RAF_RS00185 ceb15a01b0477de35ee02a88b91c17bf 164 SUPERFAMILY SSF53597 2 161 3.8E-46 T 21-04-2016 IPR024072 Dihydrofolate reductase-like domain RAF_RS02355 9afe6b5dd38f9a09884901d554a353be 341 Gene3D G3DSA:3.90.25.10 183 264 2.9E-8 T 21-04-2016 RAF_RS02355 9afe6b5dd38f9a09884901d554a353be 341 PANTHER PTHR10366:SF360 6 263 2.2E-160 T 21-04-2016 RAF_RS02355 9afe6b5dd38f9a09884901d554a353be 341 PANTHER PTHR10366:SF360 282 334 2.2E-160 T 21-04-2016 RAF_RS02355 9afe6b5dd38f9a09884901d554a353be 341 Pfam PF02719 Polysaccharide biosynthesis protein 7 285 1.4E-101 T 21-04-2016 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain RAF_RS02355 9afe6b5dd38f9a09884901d554a353be 341 PANTHER PTHR10366 6 263 2.2E-160 T 21-04-2016 RAF_RS02355 9afe6b5dd38f9a09884901d554a353be 341 PANTHER PTHR10366 282 334 2.2E-160 T 21-04-2016 RAF_RS02355 9afe6b5dd38f9a09884901d554a353be 341 SUPERFAMILY SSF51735 1 265 1.62E-50 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS02355 9afe6b5dd38f9a09884901d554a353be 341 Pfam PF08485 Polysaccharide biosynthesis protein C-terminal 288 335 6.7E-24 T 21-04-2016 IPR013692 UDP-glucose 4-epimerase CapD, C-terminal domain GO:0003978|GO:0009103 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344 RAF_RS02355 9afe6b5dd38f9a09884901d554a353be 341 Gene3D G3DSA:3.40.50.720 5 182 4.8E-38 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS04175 c2330ddaa91edb70612c21e4839b5987 161 PANTHER PTHR33867 1 150 2.6E-33 T 21-04-2016 RAF_RS04175 c2330ddaa91edb70612c21e4839b5987 161 SUPERFAMILY SSF75420 2 84 6.67E-17 T 21-04-2016 IPR028989 Ribosome maturation factor RimP, N-terminal RAF_RS04175 c2330ddaa91edb70612c21e4839b5987 161 Pfam PF02576 Putative ribosome maturation factor RimP 12 148 7.0E-37 T 21-04-2016 IPR003728 Ribosome maturation factor RimP GO:0042274 RAF_RS04175 c2330ddaa91edb70612c21e4839b5987 161 SUPERFAMILY SSF74942 85 152 1.7E-14 T 21-04-2016 IPR028998 Ribosome maturation factor RimP, C-terminal RAF_RS04175 c2330ddaa91edb70612c21e4839b5987 161 PANTHER PTHR33867:SF1 1 150 2.6E-33 T 21-04-2016 RAF_RS04175 c2330ddaa91edb70612c21e4839b5987 161 Gene3D G3DSA:3.30.300.70 1 80 2.7E-20 T 21-04-2016 IPR028989 Ribosome maturation factor RimP, N-terminal RAF_RS04175 c2330ddaa91edb70612c21e4839b5987 161 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 6 152 20.421 T 21-04-2016 IPR003728 Ribosome maturation factor RimP GO:0042274 RAF_RS04175 c2330ddaa91edb70612c21e4839b5987 161 Gene3D G3DSA:2.30.30.180 89 149 4.0E-11 T 21-04-2016 IPR028998 Ribosome maturation factor RimP, C-terminal RAF_RS05805 1016d3f849eb6af7d4f2f8ba186701ba 299 Pfam PF00571 CBS domain 150 196 5.1E-7 T 21-04-2016 IPR000644 CBS domain RAF_RS05805 1016d3f849eb6af7d4f2f8ba186701ba 299 Gene3D G3DSA:3.30.465.10 191 292 7.7E-19 T 21-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RAF_RS05805 1016d3f849eb6af7d4f2f8ba186701ba 299 Pfam PF03471 Transporter associated domain 215 293 4.0E-12 T 21-04-2016 IPR005170 Transporter-associated domain RAF_RS05805 1016d3f849eb6af7d4f2f8ba186701ba 299 SUPERFAMILY SSF54631 64 199 5.86E-27 T 21-04-2016 RAF_RS05805 1016d3f849eb6af7d4f2f8ba186701ba 299 SMART SM01091 213 294 5.6E-11 T 21-04-2016 IPR005170 Transporter-associated domain RAF_RS05805 1016d3f849eb6af7d4f2f8ba186701ba 299 SUPERFAMILY SSF56176 210 291 9.0E-12 T 21-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RAF_RS05805 1016d3f849eb6af7d4f2f8ba186701ba 299 PANTHER PTHR22777 60 295 2.2E-66 T 21-04-2016 RAF_RS05805 1016d3f849eb6af7d4f2f8ba186701ba 299 Gene3D G3DSA:3.10.580.10 62 190 2.8E-16 T 21-04-2016 RAF_RS00465 65053e495c6d28d42d13e40636a01bea 555 ProSitePatterns PS00211 ABC transporters family signature. 165 179 - T 21-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAF_RS00465 65053e495c6d28d42d13e40636a01bea 555 Gene3D G3DSA:3.40.50.300 9 277 5.7E-50 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00465 65053e495c6d28d42d13e40636a01bea 555 Pfam PF12848 ABC transporter 232 304 2.8E-9 T 21-04-2016 IPR032781 ABC-transporter extension domain RAF_RS00465 65053e495c6d28d42d13e40636a01bea 555 SUPERFAMILY SSF52540 9 242 1.33E-48 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00465 65053e495c6d28d42d13e40636a01bea 555 SMART SM00382 350 523 8.0E-10 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS00465 65053e495c6d28d42d13e40636a01bea 555 SMART SM00382 31 238 2.4E-8 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS00465 65053e495c6d28d42d13e40636a01bea 555 SUPERFAMILY SSF52540 303 518 7.79E-46 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00465 65053e495c6d28d42d13e40636a01bea 555 Pfam PF00005 ABC transporter 22 193 2.2E-24 T 21-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAF_RS00465 65053e495c6d28d42d13e40636a01bea 555 Pfam PF00005 ABC transporter 341 475 4.8E-25 T 21-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAF_RS00465 65053e495c6d28d42d13e40636a01bea 555 PANTHER PTHR19211 4 554 4.5E-303 T 21-04-2016 RAF_RS00465 65053e495c6d28d42d13e40636a01bea 555 PANTHER PTHR19211:SF7 4 554 4.5E-303 T 21-04-2016 RAF_RS00465 65053e495c6d28d42d13e40636a01bea 555 Gene3D G3DSA:3.40.50.300 325 534 3.3E-46 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00465 65053e495c6d28d42d13e40636a01bea 555 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 4 554 1.2E-276 T 21-04-2016 IPR022374 ABC transporter, ATP-binding protein, ChvD RAF_RS00465 65053e495c6d28d42d13e40636a01bea 555 Gene3D G3DSA:3.40.50.300 278 303 1.4E-5 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02005 5f34065862cd28d777b3d155c9c15fe4 232 Pfam PF04335 VirB8 protein 21 222 2.7E-15 T 21-04-2016 IPR007430 Bacterial virulence protein VirB8 GO:0016020 RAF_RS02005 5f34065862cd28d777b3d155c9c15fe4 232 SUPERFAMILY SSF54427 96 222 3.07E-26 T 21-04-2016 IPR032710 NTF2-like domain RAF_RS01055 028f6cce9a26d342c4528407ca660178 768 Pfam PF01103 Surface antigen 447 766 1.5E-57 T 21-04-2016 IPR000184 Bacterial surface antigen (D15) GO:0019867 RAF_RS01055 028f6cce9a26d342c4528407ca660178 768 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 9 768 22.89 T 21-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 RAF_RS01055 028f6cce9a26d342c4528407ca660178 768 PIRSF PIRSF006076 2 768 3.7E-220 T 21-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 RAF_RS01055 028f6cce9a26d342c4528407ca660178 768 Pfam PF07244 Surface antigen variable number repeat 97 172 1.1E-12 T 21-04-2016 IPR010827 Surface antigen variable number GO:0019867 RAF_RS01055 028f6cce9a26d342c4528407ca660178 768 Pfam PF07244 Surface antigen variable number repeat 177 263 1.1E-13 T 21-04-2016 IPR010827 Surface antigen variable number GO:0019867 RAF_RS01055 028f6cce9a26d342c4528407ca660178 768 Pfam PF07244 Surface antigen variable number repeat 268 342 6.9E-6 T 21-04-2016 IPR010827 Surface antigen variable number GO:0019867 RAF_RS01055 028f6cce9a26d342c4528407ca660178 768 Pfam PF07244 Surface antigen variable number repeat 347 420 9.2E-12 T 21-04-2016 IPR010827 Surface antigen variable number GO:0019867 RAF_RS01055 028f6cce9a26d342c4528407ca660178 768 Pfam PF07244 Surface antigen variable number repeat 27 93 2.3E-8 T 21-04-2016 IPR010827 Surface antigen variable number GO:0019867 RAF_RS01055 028f6cce9a26d342c4528407ca660178 768 Gene3D G3DSA:2.40.160.50 593 765 2.2E-15 T 21-04-2016 RAF_RS01055 028f6cce9a26d342c4528407ca660178 768 PANTHER PTHR12815 9 766 2.2E-160 T 21-04-2016 RAF_RS01055 028f6cce9a26d342c4528407ca660178 768 PANTHER PTHR12815:SF11 9 766 2.2E-160 T 21-04-2016 RAF_RS01055 028f6cce9a26d342c4528407ca660178 768 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 27 767 1.3E-222 T 21-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 RAF_RS03625 b3b0afcf6790d444d3fc6339209518b0 270 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 58 71 1.2E-15 T 21-04-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 RAF_RS03625 b3b0afcf6790d444d3fc6339209518b0 270 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 37 51 1.2E-15 T 21-04-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 RAF_RS03625 b3b0afcf6790d444d3fc6339209518b0 270 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 179 191 1.2E-15 T 21-04-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 RAF_RS03625 b3b0afcf6790d444d3fc6339209518b0 270 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 15 31 1.2E-15 T 21-04-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 RAF_RS03625 b3b0afcf6790d444d3fc6339209518b0 270 TIGRFAM TIGR00571 dam: DNA adenine methylase 10 259 1.8E-59 T 21-04-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 RAF_RS03625 b3b0afcf6790d444d3fc6339209518b0 270 PANTHER PTHR30481 1 267 2.4E-54 T 21-04-2016 RAF_RS03625 b3b0afcf6790d444d3fc6339209518b0 270 SUPERFAMILY SSF53335 10 266 1.73E-58 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS03625 b3b0afcf6790d444d3fc6339209518b0 270 Gene3D G3DSA:3.40.50.150 166 267 4.9E-47 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS03625 b3b0afcf6790d444d3fc6339209518b0 270 Gene3D G3DSA:3.40.50.150 5 67 4.9E-47 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS03625 b3b0afcf6790d444d3fc6339209518b0 270 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 15 251 7.4E-43 T 21-04-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 RAF_RS03625 b3b0afcf6790d444d3fc6339209518b0 270 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 182 188 - T 21-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RAF_RS03625 b3b0afcf6790d444d3fc6339209518b0 270 PIRSF PIRSF000398 6 270 1.1E-56 T 21-04-2016 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 RAF_RS03625 b3b0afcf6790d444d3fc6339209518b0 270 PANTHER PTHR30481:SF3 1 267 2.4E-54 T 21-04-2016 RAF_RS03625 b3b0afcf6790d444d3fc6339209518b0 270 Gene3D G3DSA:1.10.1020.10 68 160 3.8E-17 T 21-04-2016 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 RAF_RS05530 3defbf9ff87d264da9d2926e3e6bda1e 1654 SMART SM00869 1370 1644 8.3E-37 T 21-04-2016 IPR005546 Autotransporter beta-domain RAF_RS05530 3defbf9ff87d264da9d2926e3e6bda1e 1654 Pfam PF03797 Autotransporter beta-domain 1370 1644 2.7E-29 T 21-04-2016 IPR005546 Autotransporter beta-domain RAF_RS05530 3defbf9ff87d264da9d2926e3e6bda1e 1654 Pfam PF12334 Rickettsia outer membrane protein B 704 926 7.4E-79 T 21-04-2016 IPR022095 Rickettsia outer membrane protein B RAF_RS05530 3defbf9ff87d264da9d2926e3e6bda1e 1654 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 1213 1654 3.7E-75 T 21-04-2016 IPR006315 Outer membrane autotransporter barrel GO:0019867 RAF_RS05530 3defbf9ff87d264da9d2926e3e6bda1e 1654 SUPERFAMILY SSF103515 1311 1334 1.27E-46 T 21-04-2016 IPR005546 Autotransporter beta-domain RAF_RS05530 3defbf9ff87d264da9d2926e3e6bda1e 1654 SUPERFAMILY SSF103515 1366 1654 1.27E-46 T 21-04-2016 IPR005546 Autotransporter beta-domain RAF_RS05530 3defbf9ff87d264da9d2926e3e6bda1e 1654 Gene3D G3DSA:2.40.128.130 1320 1654 2.2E-37 T 21-04-2016 IPR005546 Autotransporter beta-domain RAF_RS05130 005aaebb19b1f71d2c907f47904b792c 207 Gene3D G3DSA:3.40.1370.10 59 206 1.1E-53 T 21-04-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 RAF_RS05130 005aaebb19b1f71d2c907f47904b792c 207 SUPERFAMILY SSF52166 1 206 3.92E-65 T 21-04-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 RAF_RS05130 005aaebb19b1f71d2c907f47904b792c 207 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 8 207 29.72 T 21-04-2016 IPR013005 50S ribosomal protein uL4 RAF_RS05130 005aaebb19b1f71d2c907f47904b792c 207 Pfam PF00573 Ribosomal protein L4/L1 family 16 205 9.2E-58 T 21-04-2016 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 RAF_RS05130 005aaebb19b1f71d2c907f47904b792c 207 PANTHER PTHR10746 5 206 1.0E-85 T 21-04-2016 IPR013005 50S ribosomal protein uL4 RAF_RS05130 005aaebb19b1f71d2c907f47904b792c 207 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 16 204 3.4E-66 T 21-04-2016 IPR013005 50S ribosomal protein uL4 RAF_RS00825 49c320434ca84d858fa32407073e83c8 230 PIRSF PIRSF004808 1 230 1.3E-75 T 21-04-2016 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 RAF_RS00825 49c320434ca84d858fa32407073e83c8 230 Pfam PF00588 SpoU rRNA Methylase family 4 149 2.1E-30 T 21-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RAF_RS00825 49c320434ca84d858fa32407073e83c8 230 SUPERFAMILY SSF75217 2 174 3.2E-31 T 21-04-2016 IPR029028 Alpha/beta knot methyltransferases RAF_RS00825 49c320434ca84d858fa32407073e83c8 230 PANTHER PTHR12029:SF54 5 176 3.1E-26 T 21-04-2016 RAF_RS00825 49c320434ca84d858fa32407073e83c8 230 Gene3D G3DSA:3.40.1280.10 2 163 7.5E-29 T 21-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RAF_RS00825 49c320434ca84d858fa32407073e83c8 230 PANTHER PTHR12029 5 176 3.1E-26 T 21-04-2016 RAF_RS00825 49c320434ca84d858fa32407073e83c8 230 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 4 228 1.4E-51 T 21-04-2016 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 RAF_RS00985 cf3aaf29270910a6da925994f0e9c019 239 SUPERFAMILY SSF51735 1 106 3.23E-35 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS00985 cf3aaf29270910a6da925994f0e9c019 239 SUPERFAMILY SSF51735 209 238 3.23E-35 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS00985 cf3aaf29270910a6da925994f0e9c019 239 SUPERFAMILY SSF55347 107 209 5.89E-29 T 21-04-2016 RAF_RS00985 cf3aaf29270910a6da925994f0e9c019 239 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 47 236 9.1E-57 T 21-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RAF_RS00985 cf3aaf29270910a6da925994f0e9c019 239 Gene3D G3DSA:3.40.50.720 4 113 5.7E-14 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS00985 cf3aaf29270910a6da925994f0e9c019 239 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 3 105 2.4E-24 T 21-04-2016 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RAF_RS00985 cf3aaf29270910a6da925994f0e9c019 239 PANTHER PTHR20836 1 236 1.4E-57 T 21-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RAF_RS00985 cf3aaf29270910a6da925994f0e9c019 239 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 2 238 30.183 T 21-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RAF_RS00985 cf3aaf29270910a6da925994f0e9c019 239 PIRSF PIRSF000161 1 239 2.9E-81 T 21-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RAF_RS00985 cf3aaf29270910a6da925994f0e9c019 239 Gene3D G3DSA:3.30.360.10 114 206 5.0E-31 T 21-04-2016 RAF_RS00985 cf3aaf29270910a6da925994f0e9c019 239 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 129 146 - T 21-04-2016 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RAF_RS00985 cf3aaf29270910a6da925994f0e9c019 239 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 108 236 5.2E-39 T 21-04-2016 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RAF_RS01430 92a21cce59c25883aac0c4a22e93af85 175 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 5 167 1.1E-48 T 21-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RAF_RS01430 92a21cce59c25883aac0c4a22e93af85 175 SUPERFAMILY SSF56420 3 172 1.44E-58 T 21-04-2016 IPR023635 Peptide deformylase RAF_RS01430 92a21cce59c25883aac0c4a22e93af85 175 Gene3D G3DSA:3.90.45.10 4 172 2.8E-60 T 21-04-2016 IPR023635 Peptide deformylase RAF_RS01430 92a21cce59c25883aac0c4a22e93af85 175 PANTHER PTHR10458 1 173 3.0E-64 T 21-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RAF_RS01430 92a21cce59c25883aac0c4a22e93af85 175 Pfam PF01327 Polypeptide deformylase 4 160 1.6E-52 T 21-04-2016 IPR023635 Peptide deformylase RAF_RS01430 92a21cce59c25883aac0c4a22e93af85 175 PIRSF PIRSF004749 1 174 2.7E-53 T 21-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RAF_RS01430 92a21cce59c25883aac0c4a22e93af85 175 PRINTS PR01576 Peptide deformylase signature 128 157 1.0E-34 T 21-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RAF_RS01430 92a21cce59c25883aac0c4a22e93af85 175 PRINTS PR01576 Peptide deformylase signature 97 108 1.0E-34 T 21-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RAF_RS01430 92a21cce59c25883aac0c4a22e93af85 175 PRINTS PR01576 Peptide deformylase signature 33 62 1.0E-34 T 21-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RAF_RS01430 92a21cce59c25883aac0c4a22e93af85 175 PRINTS PR01576 Peptide deformylase signature 109 127 1.0E-34 T 21-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RAF_RS01430 92a21cce59c25883aac0c4a22e93af85 175 Hamap MF_00163 Peptide deformylase [def]. 2 170 29.961 T 21-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RAF_RS03520 286fa7bf2b1bb49d73a521f9d1572848 148 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 1 146 23.129 T 21-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 RAF_RS03520 286fa7bf2b1bb49d73a521f9d1572848 148 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 60 143 3.2E-31 T 21-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 RAF_RS03520 286fa7bf2b1bb49d73a521f9d1572848 148 SUPERFAMILY SSF54364 2 54 1.83E-20 T 21-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 RAF_RS03520 286fa7bf2b1bb49d73a521f9d1572848 148 Gene3D G3DSA:3.30.110.10 55 144 2.9E-31 T 21-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 RAF_RS03520 286fa7bf2b1bb49d73a521f9d1572848 148 SUPERFAMILY SSF55200 61 144 2.22E-27 T 21-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 RAF_RS03520 286fa7bf2b1bb49d73a521f9d1572848 148 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 3 52 5.6E-21 T 21-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 RAF_RS03520 286fa7bf2b1bb49d73a521f9d1572848 148 ProSitePatterns PS00938 Initiation factor 3 signature. 34 47 - T 21-04-2016 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 RAF_RS03520 286fa7bf2b1bb49d73a521f9d1572848 148 Gene3D G3DSA:3.10.20.80 1 54 2.5E-24 T 21-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 RAF_RS03520 286fa7bf2b1bb49d73a521f9d1572848 148 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 2 144 1.3E-53 T 21-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 RAF_RS03520 286fa7bf2b1bb49d73a521f9d1572848 148 PANTHER PTHR10938 1 143 1.9E-50 T 21-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 RAF_RS01155 e6482ef890c4ad629c7feb8750075cfe 111 SMART SM00248 1 30 3.6E-4 T 21-04-2016 IPR002110 Ankyrin repeat GO:0005515 RAF_RS01155 e6482ef890c4ad629c7feb8750075cfe 111 SMART SM00248 59 88 2.9E-4 T 21-04-2016 IPR002110 Ankyrin repeat GO:0005515 RAF_RS01155 e6482ef890c4ad629c7feb8750075cfe 111 PANTHER PTHR24198 2 98 1.2E-17 T 21-04-2016 RAF_RS01155 e6482ef890c4ad629c7feb8750075cfe 111 Pfam PF13606 Ankyrin repeat 2 27 4.3E-5 T 21-04-2016 IPR002110 Ankyrin repeat GO:0005515 RAF_RS01155 e6482ef890c4ad629c7feb8750075cfe 111 SUPERFAMILY SSF48403 2 99 5.29E-21 T 21-04-2016 IPR020683 Ankyrin repeat-containing domain RAF_RS01155 e6482ef890c4ad629c7feb8750075cfe 111 Gene3D G3DSA:1.25.40.20 2 98 3.4E-20 T 21-04-2016 IPR020683 Ankyrin repeat-containing domain RAF_RS01155 e6482ef890c4ad629c7feb8750075cfe 111 Pfam PF13857 Ankyrin repeats (many copies) 46 91 4.8E-7 T 21-04-2016 RAF_RS06905 45d0f8f704194d5b2f83b80fa8c00de4 146 Gene3D G3DSA:1.20.1530.10 1 134 2.8E-38 T 21-04-2016 IPR023171 Na/H antiporter domain RAF_RS06905 45d0f8f704194d5b2f83b80fa8c00de4 146 PANTHER PTHR30341:SF0 1 135 2.7E-27 T 21-04-2016 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 RAF_RS06905 45d0f8f704194d5b2f83b80fa8c00de4 146 Pfam PF06965 Na+/H+ antiporter 1 1 134 3.3E-34 T 21-04-2016 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 RAF_RS06905 45d0f8f704194d5b2f83b80fa8c00de4 146 PANTHER PTHR30341 1 135 2.7E-27 T 21-04-2016 RAF_RS03780 513c2d94fdc49be2c26bd223633ee8cc 327 Gene3D G3DSA:1.10.600.10 6 326 1.7E-89 T 21-04-2016 IPR008949 Isoprenoid synthase domain RAF_RS03780 513c2d94fdc49be2c26bd223633ee8cc 327 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 205 217 - T 21-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RAF_RS03780 513c2d94fdc49be2c26bd223633ee8cc 327 SUPERFAMILY SSF48576 1 327 2.24E-84 T 21-04-2016 IPR008949 Isoprenoid synthase domain RAF_RS03780 513c2d94fdc49be2c26bd223633ee8cc 327 Pfam PF00348 Polyprenyl synthetase 31 274 1.2E-65 T 21-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 RAF_RS03780 513c2d94fdc49be2c26bd223633ee8cc 327 PANTHER PTHR12001 4 327 6.5E-100 T 21-04-2016 IPR017446 Polyprenyl synthetase-related RAF_RS03780 513c2d94fdc49be2c26bd223633ee8cc 327 PANTHER PTHR12001:SF47 4 327 6.5E-100 T 21-04-2016 RAF_RS06830 617f30a481e86b2bfebfc6cd895e2835 240 Gene3D G3DSA:3.40.50.300 1 233 5.1E-76 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06830 617f30a481e86b2bfebfc6cd895e2835 240 SMART SM00382 26 210 5.7E-17 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS06830 617f30a481e86b2bfebfc6cd895e2835 240 PANTHER PTHR24220:SF327 3 236 6.5E-104 T 21-04-2016 RAF_RS06830 617f30a481e86b2bfebfc6cd895e2835 240 Pfam PF00005 ABC transporter 18 163 1.0E-36 T 21-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAF_RS06830 617f30a481e86b2bfebfc6cd895e2835 240 SUPERFAMILY SSF52540 1 231 1.3E-67 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06830 617f30a481e86b2bfebfc6cd895e2835 240 PANTHER PTHR24220 3 236 6.5E-104 T 21-04-2016 RAF_RS06830 617f30a481e86b2bfebfc6cd895e2835 240 PIRSF PIRSF039085 1 238 3.5E-85 T 21-04-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 RAF_RS05020 ace70e87a158c600c046b8c75b840a57 127 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 6 127 27.972 T 21-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RAF_RS05020 ace70e87a158c600c046b8c75b840a57 127 PIRSF PIRSF002131 1 127 1.4E-46 T 21-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RAF_RS05020 ace70e87a158c600c046b8c75b840a57 127 SUPERFAMILY SSF53137 12 127 8.37E-41 T 21-04-2016 RAF_RS05020 ace70e87a158c600c046b8c75b840a57 127 PANTHER PTHR11759 7 127 6.6E-47 T 21-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RAF_RS05020 ace70e87a158c600c046b8c75b840a57 127 ProSitePatterns PS00054 Ribosomal protein S11 signature. 95 117 - T 21-04-2016 IPR018102 Ribosomal S11, conserved site RAF_RS05020 ace70e87a158c600c046b8c75b840a57 127 Gene3D G3DSA:3.30.420.80 5 127 4.8E-44 T 21-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RAF_RS05020 ace70e87a158c600c046b8c75b840a57 127 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 8 124 6.0E-49 T 21-04-2016 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05020 ace70e87a158c600c046b8c75b840a57 127 Pfam PF00411 Ribosomal protein S11 17 126 1.3E-37 T 21-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RAF_RS03465 e094c19232bb6adff72800aa5c00adf3 180 PIRSF PIRSF016661 1 180 1.6E-45 T 21-04-2016 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 RAF_RS03465 e094c19232bb6adff72800aa5c00adf3 180 PANTHER PTHR34295:SF1 10 176 8.8E-25 T 21-04-2016 RAF_RS03465 e094c19232bb6adff72800aa5c00adf3 180 PANTHER PTHR34295 10 176 8.8E-25 T 21-04-2016 RAF_RS03465 e094c19232bb6adff72800aa5c00adf3 180 Pfam PF02632 BioY family 36 176 2.7E-29 T 21-04-2016 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 RAF_RS06710 9fd64431b75cadef611a63f18481e4c1 664 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 4 531 1.4E-176 T 21-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RAF_RS06710 9fd64431b75cadef611a63f18481e4c1 664 PANTHER PTHR30075 3 664 1.0E-225 T 21-04-2016 RAF_RS06710 9fd64431b75cadef611a63f18481e4c1 664 SUPERFAMILY SSF109604 330 475 7.01E-11 T 21-04-2016 RAF_RS06710 9fd64431b75cadef611a63f18481e4c1 664 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 3 663 1.2E-168 T 21-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RAF_RS06710 9fd64431b75cadef611a63f18481e4c1 664 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 1 664 23.589 T 21-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RAF_RS06710 9fd64431b75cadef611a63f18481e4c1 664 Pfam PF05746 DALR anticodon binding domain 558 654 1.4E-6 T 21-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RAF_RS06710 9fd64431b75cadef611a63f18481e4c1 664 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 235 250 8.1E-25 T 21-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RAF_RS06710 9fd64431b75cadef611a63f18481e4c1 664 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 379 398 8.1E-25 T 21-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RAF_RS06710 9fd64431b75cadef611a63f18481e4c1 664 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 47 59 8.1E-25 T 21-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RAF_RS06710 9fd64431b75cadef611a63f18481e4c1 664 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 307 323 8.1E-25 T 21-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RAF_RS06710 9fd64431b75cadef611a63f18481e4c1 664 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 5 18 8.1E-25 T 21-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RAF_RS06710 9fd64431b75cadef611a63f18481e4c1 664 PANTHER PTHR30075:SF2 3 664 1.0E-225 T 21-04-2016 RAF_RS04650 11dad0ac86e7e57e1c688bd41b73d46b 1122 PANTHER PTHR14025 370 1117 5.9E-279 T 21-04-2016 RAF_RS04650 11dad0ac86e7e57e1c688bd41b73d46b 1122 SUPERFAMILY SSF143517 977 1107 1.14E-32 T 21-04-2016 RAF_RS04650 11dad0ac86e7e57e1c688bd41b73d46b 1122 SMART SM01058 457 551 4.2E-38 T 21-04-2016 IPR003711 CarD-like/TRCF domain RAF_RS04650 11dad0ac86e7e57e1c688bd41b73d46b 1122 Gene3D G3DSA:3.40.50.300 780 942 1.1E-31 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04650 11dad0ac86e7e57e1c688bd41b73d46b 1122 SUPERFAMILY SSF141259 450 523 2.48E-19 T 21-04-2016 IPR003711 CarD-like/TRCF domain RAF_RS04650 11dad0ac86e7e57e1c688bd41b73d46b 1122 SUPERFAMILY SSF52540 514 762 5.02E-54 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04650 11dad0ac86e7e57e1c688bd41b73d46b 1122 SUPERFAMILY SSF52540 761 969 6.51E-44 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04650 11dad0ac86e7e57e1c688bd41b73d46b 1122 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 134 1057 0.0 T 21-04-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 RAF_RS04650 11dad0ac86e7e57e1c688bd41b73d46b 1122 Pfam PF00270 DEAD/DEAH box helicase 582 745 6.2E-19 T 21-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RAF_RS04650 11dad0ac86e7e57e1c688bd41b73d46b 1122 SMART SM00982 984 1083 4.4E-34 T 21-04-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 RAF_RS04650 11dad0ac86e7e57e1c688bd41b73d46b 1122 SUPERFAMILY SSF52540 14 332 1.23E-66 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04650 11dad0ac86e7e57e1c688bd41b73d46b 1122 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 20 1081 25.726 T 21-04-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 RAF_RS04650 11dad0ac86e7e57e1c688bd41b73d46b 1122 Gene3D G3DSA:3.30.2060.10 117 191 4.1E-7 T 21-04-2016 RAF_RS04650 11dad0ac86e7e57e1c688bd41b73d46b 1122 SUPERFAMILY SSF52540 354 447 2.39E-5 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04650 11dad0ac86e7e57e1c688bd41b73d46b 1122 SMART SM00490 805 889 4.4E-20 T 21-04-2016 IPR001650 Helicase, C-terminal RAF_RS04650 11dad0ac86e7e57e1c688bd41b73d46b 1122 PANTHER PTHR14025:SF21 370 1117 5.9E-279 T 21-04-2016 RAF_RS04650 11dad0ac86e7e57e1c688bd41b73d46b 1122 Pfam PF02559 CarD-like/TRCF domain 458 549 2.2E-23 T 21-04-2016 IPR003711 CarD-like/TRCF domain RAF_RS04650 11dad0ac86e7e57e1c688bd41b73d46b 1122 Pfam PF03461 TRCF domain 986 1075 2.6E-24 T 21-04-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 RAF_RS04650 11dad0ac86e7e57e1c688bd41b73d46b 1122 Pfam PF00271 Helicase conserved C-terminal domain 785 888 1.9E-17 T 21-04-2016 IPR001650 Helicase, C-terminal RAF_RS04650 11dad0ac86e7e57e1c688bd41b73d46b 1122 SMART SM00487 575 769 2.3E-36 T 21-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RAF_RS04650 11dad0ac86e7e57e1c688bd41b73d46b 1122 Gene3D G3DSA:3.40.50.300 566 765 5.7E-49 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02295 4a1785e389a4eeee91d6645fabb93435 447 PRINTS PR00987 Glutamyl-tRNA synthetase signature 21 32 3.7E-23 T 21-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RAF_RS02295 4a1785e389a4eeee91d6645fabb93435 447 PRINTS PR00987 Glutamyl-tRNA synthetase signature 183 193 3.7E-23 T 21-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RAF_RS02295 4a1785e389a4eeee91d6645fabb93435 447 PRINTS PR00987 Glutamyl-tRNA synthetase signature 199 207 3.7E-23 T 21-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RAF_RS02295 4a1785e389a4eeee91d6645fabb93435 447 PRINTS PR00987 Glutamyl-tRNA synthetase signature 7 19 3.7E-23 T 21-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RAF_RS02295 4a1785e389a4eeee91d6645fabb93435 447 PRINTS PR00987 Glutamyl-tRNA synthetase signature 36 49 3.7E-23 T 21-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RAF_RS02295 4a1785e389a4eeee91d6645fabb93435 447 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 10 21 - T 21-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS02295 4a1785e389a4eeee91d6645fabb93435 447 Gene3D G3DSA:3.90.800.10 69 184 1.1E-26 T 21-04-2016 RAF_RS02295 4a1785e389a4eeee91d6645fabb93435 447 Hamap MF_00022_B Glutamate--tRNA ligase [gltX]. 4 447 25.438 T 21-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RAF_RS02295 4a1785e389a4eeee91d6645fabb93435 447 Gene3D G3DSA:1.10.1160.10 237 315 4.6E-10 T 21-04-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: REACT_71 RAF_RS02295 4a1785e389a4eeee91d6645fabb93435 447 SUPERFAMILY SSF48163 283 447 1.44E-30 T 21-04-2016 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RAF_RS02295 4a1785e389a4eeee91d6645fabb93435 447 Gene3D G3DSA:3.40.50.620 185 234 2.2E-47 T 21-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS02295 4a1785e389a4eeee91d6645fabb93435 447 Gene3D G3DSA:3.40.50.620 3 68 2.2E-47 T 21-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS02295 4a1785e389a4eeee91d6645fabb93435 447 SUPERFAMILY SSF52374 3 300 5.63E-86 T 21-04-2016 RAF_RS02295 4a1785e389a4eeee91d6645fabb93435 447 Gene3D G3DSA:1.10.10.350 372 446 5.3E-13 T 21-04-2016 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RAF_RS02295 4a1785e389a4eeee91d6645fabb93435 447 PANTHER PTHR11451 3 313 2.9E-72 T 21-04-2016 RAF_RS02295 4a1785e389a4eeee91d6645fabb93435 447 PANTHER PTHR11451:SF41 3 313 2.9E-72 T 21-04-2016 RAF_RS02295 4a1785e389a4eeee91d6645fabb93435 447 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 3 308 9.7E-74 T 21-04-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 RAF_RS02295 4a1785e389a4eeee91d6645fabb93435 447 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 3 445 9.2E-110 T 21-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RAF_RS00815 c94e7d8084e410d4193377055ec22acc 339 Hamap MF_00367 GTPase Era [era]. 50 339 30.669 T 21-04-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 RAF_RS00815 c94e7d8084e410d4193377055ec22acc 339 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 4 47 4.2E-19 T 21-04-2016 IPR005728 Rickettsial palindromic element RAF_RS00815 c94e7d8084e410d4193377055ec22acc 339 PANTHER PTHR11649:SF3 40 337 3.4E-100 T 21-04-2016 RAF_RS00815 c94e7d8084e410d4193377055ec22acc 339 Pfam PF01926 50S ribosome-binding GTPase 55 169 1.5E-23 T 21-04-2016 IPR006073 GTP binding domain GO:0005525 RAF_RS00815 c94e7d8084e410d4193377055ec22acc 339 PANTHER PTHR11649 40 337 3.4E-100 T 21-04-2016 RAF_RS00815 c94e7d8084e410d4193377055ec22acc 339 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 51 211 1.3E-26 T 21-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RAF_RS00815 c94e7d8084e410d4193377055ec22acc 339 SUPERFAMILY SSF54814 224 336 2.22E-35 T 21-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 RAF_RS00815 c94e7d8084e410d4193377055ec22acc 339 Gene3D G3DSA:3.40.50.300 45 213 1.7E-41 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00815 c94e7d8084e410d4193377055ec22acc 339 TIGRFAM TIGR00436 era: GTP-binding protein Era 54 322 3.1E-68 T 21-04-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 RAF_RS00815 c94e7d8084e410d4193377055ec22acc 339 Gene3D G3DSA:3.30.300.20 231 334 6.2E-35 T 21-04-2016 IPR015946 K homology domain-like, alpha/beta RAF_RS00815 c94e7d8084e410d4193377055ec22acc 339 SUPERFAMILY SSF52540 54 246 7.09E-41 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00815 c94e7d8084e410d4193377055ec22acc 339 Pfam PF07650 KH domain 251 327 1.0E-16 T 21-04-2016 IPR004044 K Homology domain, type 2 GO:0003723 RAF_RS06105 87cc4d1efe1ebf736625a85bce246a2d 875 SUPERFAMILY SSF56672 472 875 3.56E-138 T 21-04-2016 RAF_RS06105 87cc4d1efe1ebf736625a85bce246a2d 875 Gene3D G3DSA:3.40.50.1010 5 183 1.4E-66 T 21-04-2016 IPR029060 PIN domain-like RAF_RS06105 87cc4d1efe1ebf736625a85bce246a2d 875 PANTHER PTHR10133 2 874 6.9E-293 T 21-04-2016 RAF_RS06105 87cc4d1efe1ebf736625a85bce246a2d 875 SMART SM00279 171 206 2.9E-11 T 21-04-2016 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 RAF_RS06105 87cc4d1efe1ebf736625a85bce246a2d 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 604 626 1.7E-71 T 21-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAF_RS06105 87cc4d1efe1ebf736625a85bce246a2d 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 649 672 1.7E-71 T 21-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAF_RS06105 87cc4d1efe1ebf736625a85bce246a2d 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 703 728 1.7E-71 T 21-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAF_RS06105 87cc4d1efe1ebf736625a85bce246a2d 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 792 808 1.7E-71 T 21-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAF_RS06105 87cc4d1efe1ebf736625a85bce246a2d 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 679 692 1.7E-71 T 21-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAF_RS06105 87cc4d1efe1ebf736625a85bce246a2d 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 762 773 1.7E-71 T 21-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAF_RS06105 87cc4d1efe1ebf736625a85bce246a2d 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 627 642 1.7E-71 T 21-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAF_RS06105 87cc4d1efe1ebf736625a85bce246a2d 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 740 751 1.7E-71 T 21-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAF_RS06105 87cc4d1efe1ebf736625a85bce246a2d 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 822 835 1.7E-71 T 21-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAF_RS06105 87cc4d1efe1ebf736625a85bce246a2d 875 Pfam PF00476 DNA polymerase family A 497 873 2.8E-141 T 21-04-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAF_RS06105 87cc4d1efe1ebf736625a85bce246a2d 875 Gene3D G3DSA:1.10.150.20 661 766 7.1E-31 T 21-04-2016 RAF_RS06105 87cc4d1efe1ebf736625a85bce246a2d 875 Gene3D G3DSA:1.10.150.20 184 244 2.9E-22 T 21-04-2016 RAF_RS06105 87cc4d1efe1ebf736625a85bce246a2d 875 ProSitePatterns PS00447 DNA polymerase family A signature. 703 722 - T 21-04-2016 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAF_RS06105 87cc4d1efe1ebf736625a85bce246a2d 875 Gene3D G3DSA:1.20.1060.10 491 612 2.4E-33 T 21-04-2016 RAF_RS06105 87cc4d1efe1ebf736625a85bce246a2d 875 Gene3D G3DSA:3.30.70.370 767 875 2.5E-63 T 21-04-2016 RAF_RS06105 87cc4d1efe1ebf736625a85bce246a2d 875 Gene3D G3DSA:3.30.70.370 613 660 2.5E-63 T 21-04-2016 RAF_RS06105 87cc4d1efe1ebf736625a85bce246a2d 875 TIGRFAM TIGR00593 pola: DNA polymerase I 7 875 0.0 T 21-04-2016 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAF_RS06105 87cc4d1efe1ebf736625a85bce246a2d 875 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 172 264 3.9E-25 T 21-04-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 RAF_RS06105 87cc4d1efe1ebf736625a85bce246a2d 875 Gene3D G3DSA:3.30.420.10 304 489 4.6E-5 T 21-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RAF_RS06105 87cc4d1efe1ebf736625a85bce246a2d 875 SUPERFAMILY SSF47807 172 285 1.5E-28 T 21-04-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 RAF_RS06105 87cc4d1efe1ebf736625a85bce246a2d 875 SMART SM00482 635 839 7.5E-116 T 21-04-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAF_RS06105 87cc4d1efe1ebf736625a85bce246a2d 875 PANTHER PTHR10133:SF27 2 874 6.9E-293 T 21-04-2016 RAF_RS06105 87cc4d1efe1ebf736625a85bce246a2d 875 SMART SM00475 3 260 4.8E-136 T 21-04-2016 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 RAF_RS06105 87cc4d1efe1ebf736625a85bce246a2d 875 SUPERFAMILY SSF88723 3 168 7.01E-58 T 21-04-2016 IPR029060 PIN domain-like RAF_RS06105 87cc4d1efe1ebf736625a85bce246a2d 875 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 7 168 4.8E-55 T 21-04-2016 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 RAF_RS05170 2cbf6f6b4a70b2aed87e3da22ffdc3f1 463 PANTHER PTHR11444 1 462 4.2E-251 T 21-04-2016 IPR000362 Fumarate lyase family RAF_RS05170 2cbf6f6b4a70b2aed87e3da22ffdc3f1 463 PANTHER PTHR11444:SF1 1 462 4.2E-251 T 21-04-2016 RAF_RS05170 2cbf6f6b4a70b2aed87e3da22ffdc3f1 463 PRINTS PR00145 Argininosuccinate lyase family signature 317 333 3.6E-5 T 21-04-2016 RAF_RS05170 2cbf6f6b4a70b2aed87e3da22ffdc3f1 463 PRINTS PR00145 Argininosuccinate lyase family signature 133 155 3.6E-5 T 21-04-2016 RAF_RS05170 2cbf6f6b4a70b2aed87e3da22ffdc3f1 463 PRINTS PR00145 Argininosuccinate lyase family signature 175 195 3.6E-5 T 21-04-2016 RAF_RS05170 2cbf6f6b4a70b2aed87e3da22ffdc3f1 463 Hamap MF_00743 Fumarate hydratase class II [fumC]. 4 462 90.055 T 21-04-2016 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 RAF_RS05170 2cbf6f6b4a70b2aed87e3da22ffdc3f1 463 ProSitePatterns PS00163 Fumarate lyases signature. 317 326 - T 21-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 RAF_RS05170 2cbf6f6b4a70b2aed87e3da22ffdc3f1 463 SUPERFAMILY SSF48557 3 460 2.04E-149 T 21-04-2016 IPR008948 L-Aspartase-like GO:0003824 RAF_RS05170 2cbf6f6b4a70b2aed87e3da22ffdc3f1 463 Gene3D G3DSA:1.20.200.10 139 400 9.8E-103 T 21-04-2016 RAF_RS05170 2cbf6f6b4a70b2aed87e3da22ffdc3f1 463 Gene3D G3DSA:1.10.40.30 405 462 9.2E-31 T 21-04-2016 RAF_RS05170 2cbf6f6b4a70b2aed87e3da22ffdc3f1 463 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 4 461 2.5E-248 T 21-04-2016 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 RAF_RS05170 2cbf6f6b4a70b2aed87e3da22ffdc3f1 463 Gene3D G3DSA:1.10.275.10 3 138 6.1E-59 T 21-04-2016 IPR024083 Fumarase/histidase, N-terminal RAF_RS05170 2cbf6f6b4a70b2aed87e3da22ffdc3f1 463 Pfam PF00206 Lyase 12 342 1.6E-111 T 21-04-2016 IPR022761 Fumarate lyase, N-terminal RAF_RS05170 2cbf6f6b4a70b2aed87e3da22ffdc3f1 463 Pfam PF10415 Fumarase C C-terminus 408 460 1.2E-25 T 21-04-2016 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 RAF_RS05170 2cbf6f6b4a70b2aed87e3da22ffdc3f1 463 PRINTS PR00149 Fumarate lyase superfamily signature 271 298 9.3E-36 T 21-04-2016 IPR000362 Fumarate lyase family RAF_RS05170 2cbf6f6b4a70b2aed87e3da22ffdc3f1 463 PRINTS PR00149 Fumarate lyase superfamily signature 180 198 9.3E-36 T 21-04-2016 IPR000362 Fumarate lyase family RAF_RS05170 2cbf6f6b4a70b2aed87e3da22ffdc3f1 463 PRINTS PR00149 Fumarate lyase superfamily signature 317 333 9.3E-36 T 21-04-2016 IPR000362 Fumarate lyase family RAF_RS05170 2cbf6f6b4a70b2aed87e3da22ffdc3f1 463 PRINTS PR00149 Fumarate lyase superfamily signature 134 152 9.3E-36 T 21-04-2016 IPR000362 Fumarate lyase family RAF_RS02985 f962ee58f00b96c937609e1c077f8d09 270 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 5 267 2.2E-83 T 21-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RAF_RS02985 f962ee58f00b96c937609e1c077f8d09 270 Pfam PF01678 Diaminopimelate epimerase 7 123 2.3E-18 T 21-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RAF_RS02985 f962ee58f00b96c937609e1c077f8d09 270 Pfam PF01678 Diaminopimelate epimerase 150 260 9.3E-14 T 21-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RAF_RS02985 f962ee58f00b96c937609e1c077f8d09 270 PANTHER PTHR31689 4 270 3.6E-77 T 21-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RAF_RS02985 f962ee58f00b96c937609e1c077f8d09 270 SUPERFAMILY SSF54506 147 265 1.18E-31 T 21-04-2016 RAF_RS02985 f962ee58f00b96c937609e1c077f8d09 270 SUPERFAMILY SSF54506 5 129 3.66E-30 T 21-04-2016 RAF_RS02985 f962ee58f00b96c937609e1c077f8d09 270 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 66 80 - T 21-04-2016 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RAF_RS02985 f962ee58f00b96c937609e1c077f8d09 270 Gene3D G3DSA:3.10.310.10 5 120 9.1E-34 T 21-04-2016 RAF_RS02985 f962ee58f00b96c937609e1c077f8d09 270 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 5 268 30.915 T 21-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 RAF_RS02985 f962ee58f00b96c937609e1c077f8d09 270 Gene3D G3DSA:3.10.310.10 121 255 1.9E-29 T 21-04-2016 RAF_RS06845 10255a8518b086643088f34caf0241b7 87 PANTHER PTHR38781:SF1 2 86 3.9E-16 T 21-04-2016 RAF_RS06845 10255a8518b086643088f34caf0241b7 87 PANTHER PTHR38781 2 86 3.9E-16 T 21-04-2016 RAF_RS06845 10255a8518b086643088f34caf0241b7 87 TIGRFAM TIGR02384 RelB_DinJ: addiction module antitoxin, RelB/DinJ family 1 83 4.2E-21 T 21-04-2016 IPR007337 RelB antitoxin/Antitoxin DinJ RAF_RS06845 10255a8518b086643088f34caf0241b7 87 Pfam PF04221 RelB antitoxin 5 72 6.4E-23 T 21-04-2016 IPR007337 RelB antitoxin/Antitoxin DinJ RAF_RS06845 10255a8518b086643088f34caf0241b7 87 PIRSF PIRSF003108 1 87 6.4E-29 T 21-04-2016 IPR026262 Antitoxin DinJ GO:0000986|GO:0015643|GO:0044010 RAF_RS04640 91e84e7668cbe23d6e3a2b62a5e6ed2e 449 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 27 448 2.6E-136 T 21-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RAF_RS04640 91e84e7668cbe23d6e3a2b62a5e6ed2e 449 Pfam PF01225 Mur ligase family, catalytic domain 25 93 2.0E-6 T 21-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RAF_RS04640 91e84e7668cbe23d6e3a2b62a5e6ed2e 449 Gene3D G3DSA:3.40.1190.10 87 311 3.2E-63 T 21-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RAF_RS04640 91e84e7668cbe23d6e3a2b62a5e6ed2e 449 Pfam PF08245 Mur ligase middle domain 104 292 3.4E-44 T 21-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RAF_RS04640 91e84e7668cbe23d6e3a2b62a5e6ed2e 449 PANTHER PTHR23135:SF3 9 447 6.1E-117 T 21-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RAF_RS04640 91e84e7668cbe23d6e3a2b62a5e6ed2e 449 Pfam PF02875 Mur ligase family, glutamate ligase domain 314 394 5.1E-12 T 21-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RAF_RS04640 91e84e7668cbe23d6e3a2b62a5e6ed2e 449 SUPERFAMILY SSF53623 99 312 8.24E-43 T 21-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RAF_RS04640 91e84e7668cbe23d6e3a2b62a5e6ed2e 449 SUPERFAMILY SSF53244 314 447 6.41E-32 T 21-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RAF_RS04640 91e84e7668cbe23d6e3a2b62a5e6ed2e 449 Gene3D G3DSA:3.90.190.20 313 447 2.7E-36 T 21-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RAF_RS04640 91e84e7668cbe23d6e3a2b62a5e6ed2e 449 SUPERFAMILY SSF63418 5 95 1.22E-18 T 21-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RAF_RS04640 91e84e7668cbe23d6e3a2b62a5e6ed2e 449 PANTHER PTHR23135 9 447 6.1E-117 T 21-04-2016 RAF_RS04640 91e84e7668cbe23d6e3a2b62a5e6ed2e 449 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 14 449 30.99 T 21-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RAF_RS04640 91e84e7668cbe23d6e3a2b62a5e6ed2e 449 Gene3D G3DSA:3.40.1390.10 18 86 2.3E-16 T 21-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RAF_RS04870 516e4588a29fe783de3d1565c03efe8b 514 Pfam PF01039 Carboxyl transferase domain 31 512 3.4E-199 T 21-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 RAF_RS04870 516e4588a29fe783de3d1565c03efe8b 514 Gene3D G3DSA:3.90.226.10 257 514 1.8E-99 T 21-04-2016 IPR029045 ClpP/crotonase-like domain RAF_RS04870 516e4588a29fe783de3d1565c03efe8b 514 SUPERFAMILY SSF52096 8 258 2.46E-76 T 21-04-2016 IPR029045 ClpP/crotonase-like domain RAF_RS04870 516e4588a29fe783de3d1565c03efe8b 514 SUPERFAMILY SSF52096 255 514 2.16E-87 T 21-04-2016 IPR029045 ClpP/crotonase-like domain RAF_RS04870 516e4588a29fe783de3d1565c03efe8b 514 Gene3D G3DSA:3.90.226.10 12 256 9.3E-83 T 21-04-2016 IPR029045 ClpP/crotonase-like domain RAF_RS04870 516e4588a29fe783de3d1565c03efe8b 514 PANTHER PTHR22855:SF37 1 514 0.0 T 21-04-2016 RAF_RS04870 516e4588a29fe783de3d1565c03efe8b 514 PANTHER PTHR22855 1 514 0.0 T 21-04-2016 RAF_RS01680 8d9a72d4f270c6fb210e14be66f0691f 188 Gene3D G3DSA:2.40.50.140 130 187 6.7E-23 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS01680 8d9a72d4f270c6fb210e14be66f0691f 188 SMART SM01185 69 123 4.7E-22 T 21-04-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 RAF_RS01680 8d9a72d4f270c6fb210e14be66f0691f 188 ProSitePatterns PS01275 Elongation factor P signature. 152 171 - T 21-04-2016 IPR013852 Translation elongation factor P/YeiP, conserved site UniPathway: UPA00345 RAF_RS01680 8d9a72d4f270c6fb210e14be66f0691f 188 Pfam PF01132 Elongation factor P (EF-P) OB domain 70 123 3.1E-19 T 21-04-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 RAF_RS01680 8d9a72d4f270c6fb210e14be66f0691f 188 PIRSF PIRSF005901 1 188 1.3E-66 T 21-04-2016 IPR020599 Translation elongation factor P/YeiP UniPathway: UPA00345 RAF_RS01680 8d9a72d4f270c6fb210e14be66f0691f 188 Gene3D G3DSA:2.30.30.30 1 65 2.8E-20 T 21-04-2016 IPR014722 Ribosomal protein L2 domain 2 RAF_RS01680 8d9a72d4f270c6fb210e14be66f0691f 188 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 4 59 2.0E-20 T 21-04-2016 IPR013185 Translation elongation factor, KOW-like UniPathway: UPA00345 RAF_RS01680 8d9a72d4f270c6fb210e14be66f0691f 188 SUPERFAMILY SSF50249 130 187 4.91E-17 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS01680 8d9a72d4f270c6fb210e14be66f0691f 188 Hamap MF_00141 Elongation factor P [efp]. 2 187 46.358 T 21-04-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 UniPathway: UPA00345 RAF_RS01680 8d9a72d4f270c6fb210e14be66f0691f 188 SMART SM00841 131 186 1.0E-26 T 21-04-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 RAF_RS01680 8d9a72d4f270c6fb210e14be66f0691f 188 PANTHER PTHR30053:SF1 1 188 3.0E-75 T 21-04-2016 RAF_RS01680 8d9a72d4f270c6fb210e14be66f0691f 188 TIGRFAM TIGR00038 efp: translation elongation factor P 3 187 2.2E-69 T 21-04-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 UniPathway: UPA00345 RAF_RS01680 8d9a72d4f270c6fb210e14be66f0691f 188 SUPERFAMILY SSF50249 67 128 2.31E-17 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS01680 8d9a72d4f270c6fb210e14be66f0691f 188 Pfam PF09285 Elongation factor P, C-terminal 131 186 8.5E-21 T 21-04-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 RAF_RS01680 8d9a72d4f270c6fb210e14be66f0691f 188 PANTHER PTHR30053 1 188 3.0E-75 T 21-04-2016 RAF_RS01680 8d9a72d4f270c6fb210e14be66f0691f 188 Gene3D G3DSA:2.40.50.140 67 128 6.3E-23 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS01680 8d9a72d4f270c6fb210e14be66f0691f 188 SUPERFAMILY SSF50104 3 65 1.02E-14 T 21-04-2016 IPR008991 Translation protein SH3-like domain RAF_RS00740 a8f93024f6c2b896b78f4843e26ec1ad 884 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 336 576 1.1E-9 T 21-04-2016 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 RAF_RS06660 6e2d37e1cf4b97d44511b5dfb2b4c589 435 PRINTS PR00143 Citrate synthase signature 224 239 1.8E-55 T 21-04-2016 IPR002020 Citrate synthase GO:0046912 RAF_RS06660 6e2d37e1cf4b97d44511b5dfb2b4c589 435 PRINTS PR00143 Citrate synthase signature 386 400 1.8E-55 T 21-04-2016 IPR002020 Citrate synthase GO:0046912 RAF_RS06660 6e2d37e1cf4b97d44511b5dfb2b4c589 435 PRINTS PR00143 Citrate synthase signature 366 382 1.8E-55 T 21-04-2016 IPR002020 Citrate synthase GO:0046912 RAF_RS06660 6e2d37e1cf4b97d44511b5dfb2b4c589 435 PRINTS PR00143 Citrate synthase signature 170 183 1.8E-55 T 21-04-2016 IPR002020 Citrate synthase GO:0046912 RAF_RS06660 6e2d37e1cf4b97d44511b5dfb2b4c589 435 PRINTS PR00143 Citrate synthase signature 246 274 1.8E-55 T 21-04-2016 IPR002020 Citrate synthase GO:0046912 RAF_RS06660 6e2d37e1cf4b97d44511b5dfb2b4c589 435 PRINTS PR00143 Citrate synthase signature 301 321 1.8E-55 T 21-04-2016 IPR002020 Citrate synthase GO:0046912 RAF_RS06660 6e2d37e1cf4b97d44511b5dfb2b4c589 435 PANTHER PTHR11739 47 435 1.5E-195 T 21-04-2016 IPR002020 Citrate synthase GO:0046912 RAF_RS06660 6e2d37e1cf4b97d44511b5dfb2b4c589 435 Pfam PF00285 Citrate synthase, C-terminal domain 52 418 3.4E-132 T 21-04-2016 IPR002020 Citrate synthase GO:0046912 RAF_RS06660 6e2d37e1cf4b97d44511b5dfb2b4c589 435 PIRSF PIRSF001369 43 435 1.2E-173 T 21-04-2016 IPR024176 Citrate synthase, bacterial-type UniPathway: UPA00223 RAF_RS06660 6e2d37e1cf4b97d44511b5dfb2b4c589 435 ProSitePatterns PS00480 Citrate synthase signature. 308 320 - T 21-04-2016 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 UniPathway: UPA00223 RAF_RS06660 6e2d37e1cf4b97d44511b5dfb2b4c589 435 Gene3D G3DSA:1.10.230.10 286 380 1.1E-44 T 21-04-2016 IPR016143 Citrate synthase-like, small alpha subdomain RAF_RS06660 6e2d37e1cf4b97d44511b5dfb2b4c589 435 Gene3D G3DSA:1.10.580.10 58 285 3.0E-96 T 21-04-2016 IPR016142 Citrate synthase-like, large alpha subdomain UniPathway: UPA00223 RAF_RS06660 6e2d37e1cf4b97d44511b5dfb2b4c589 435 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 21 429 9.0E-214 T 21-04-2016 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 UniPathway: UPA00223 RAF_RS06660 6e2d37e1cf4b97d44511b5dfb2b4c589 435 SUPERFAMILY SSF48256 11 435 1.14E-162 T 21-04-2016 IPR002020 Citrate synthase GO:0046912 RAF_RS04665 bcb427b0d32cdd165a13983866ff877d 463 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 16 462 32.768 T 21-04-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 RAF_RS04665 bcb427b0d32cdd165a13983866ff877d 463 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 225 239 1.9E-47 T 21-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RAF_RS04665 bcb427b0d32cdd165a13983866ff877d 463 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 161 181 1.9E-47 T 21-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RAF_RS04665 bcb427b0d32cdd165a13983866ff877d 463 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 421 440 1.9E-47 T 21-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RAF_RS04665 bcb427b0d32cdd165a13983866ff877d 463 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 259 286 1.9E-47 T 21-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RAF_RS04665 bcb427b0d32cdd165a13983866ff877d 463 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 193 207 1.9E-47 T 21-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like RAF_RS04665 bcb427b0d32cdd165a13983866ff877d 463 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 19 460 3.6E-169 T 21-04-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 RAF_RS04665 bcb427b0d32cdd165a13983866ff877d 463 Gene3D G3DSA:1.10.8.60 295 361 3.3E-28 T 21-04-2016 RAF_RS04665 bcb427b0d32cdd165a13983866ff877d 463 SUPERFAMILY SSF52540 128 339 7.36E-41 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04665 bcb427b0d32cdd165a13983866ff877d 463 Gene3D G3DSA:3.40.50.300 124 291 3.6E-59 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04665 bcb427b0d32cdd165a13983866ff877d 463 SUPERFAMILY SSF48295 358 463 8.89E-36 T 21-04-2016 IPR010921 Trp repressor/replication initiator GO:0043565 RAF_RS04665 bcb427b0d32cdd165a13983866ff877d 463 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 372 440 9.8E-29 T 21-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 RAF_RS04665 bcb427b0d32cdd165a13983866ff877d 463 Gene3D G3DSA:1.10.1750.10 362 462 9.9E-38 T 21-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 RAF_RS04665 bcb427b0d32cdd165a13983866ff877d 463 PANTHER PTHR30050:SF2 14 463 6.6E-188 T 21-04-2016 RAF_RS04665 bcb427b0d32cdd165a13983866ff877d 463 Pfam PF00308 Bacterial dnaA protein 126 345 4.1E-91 T 21-04-2016 IPR013317 Chromosomal replication initiator protein DnaA RAF_RS04665 bcb427b0d32cdd165a13983866ff877d 463 ProSitePatterns PS01008 DnaA protein signature. 421 440 - T 21-04-2016 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 RAF_RS04665 bcb427b0d32cdd165a13983866ff877d 463 SMART SM00382 160 288 6.5E-9 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS04665 bcb427b0d32cdd165a13983866ff877d 463 Pfam PF11638 DnaA N-terminal domain 17 78 3.5E-19 T 21-04-2016 IPR024633 DnaA N-terminal domain RAF_RS04665 bcb427b0d32cdd165a13983866ff877d 463 PANTHER PTHR30050 14 463 6.6E-188 T 21-04-2016 RAF_RS04665 bcb427b0d32cdd165a13983866ff877d 463 SMART SM00760 371 440 3.4E-38 T 21-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 RAF_RS01390 8162d64255ee18398091de580ce55641 905 PANTHER PTHR10169 774 857 0.0 T 21-04-2016 RAF_RS01390 8162d64255ee18398091de580ce55641 905 PANTHER PTHR10169 3 414 0.0 T 21-04-2016 RAF_RS01390 8162d64255ee18398091de580ce55641 905 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 9 883 0.0 T 21-04-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RAF_RS01390 8162d64255ee18398091de580ce55641 905 PANTHER PTHR10169 441 742 0.0 T 21-04-2016 RAF_RS01390 8162d64255ee18398091de580ce55641 905 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 4 886 28.824 T 21-04-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RAF_RS01390 8162d64255ee18398091de580ce55641 905 Gene3D G3DSA:2.120.10.90 783 882 1.2E-115 T 21-04-2016 RAF_RS01390 8162d64255ee18398091de580ce55641 905 Gene3D G3DSA:2.120.10.90 522 734 1.2E-115 T 21-04-2016 RAF_RS01390 8162d64255ee18398091de580ce55641 905 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 33 496 4.2E-156 T 21-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS01390 8162d64255ee18398091de580ce55641 905 Gene3D G3DSA:3.90.199.10 35 217 3.5E-84 T 21-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 RAF_RS01390 8162d64255ee18398091de580ce55641 905 SUPERFAMILY SSF101904 524 735 4.58E-98 T 21-04-2016 RAF_RS01390 8162d64255ee18398091de580ce55641 905 SUPERFAMILY SSF101904 783 897 4.58E-98 T 21-04-2016 RAF_RS01390 8162d64255ee18398091de580ce55641 905 PANTHER PTHR10169:SF48 774 857 0.0 T 21-04-2016 RAF_RS01390 8162d64255ee18398091de580ce55641 905 SUPERFAMILY SSF56719 31 512 7.72E-179 T 21-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 RAF_RS01390 8162d64255ee18398091de580ce55641 905 Gene3D G3DSA:1.10.268.10 363 487 5.9E-39 T 21-04-2016 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS01390 8162d64255ee18398091de580ce55641 905 Gene3D G3DSA:3.30.1360.40 237 332 1.2E-37 T 21-04-2016 IPR024946 Arginine repressor C-terminal-like domain RAF_RS01390 8162d64255ee18398091de580ce55641 905 PANTHER PTHR10169:SF48 3 414 0.0 T 21-04-2016 RAF_RS01390 8162d64255ee18398091de580ce55641 905 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 582 628 7.7E-5 T 21-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RAF_RS01390 8162d64255ee18398091de580ce55641 905 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 639 682 9.3E-6 T 21-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RAF_RS01390 8162d64255ee18398091de580ce55641 905 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 786 833 1.0E-10 T 21-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RAF_RS01390 8162d64255ee18398091de580ce55641 905 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 530 572 1.6E-9 T 21-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RAF_RS01390 8162d64255ee18398091de580ce55641 905 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 686 733 5.7E-12 T 21-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RAF_RS01390 8162d64255ee18398091de580ce55641 905 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 836 882 1.5E-14 T 21-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RAF_RS01390 8162d64255ee18398091de580ce55641 905 PANTHER PTHR10169:SF48 441 742 0.0 T 21-04-2016 RAF_RS01390 8162d64255ee18398091de580ce55641 905 SMART SM00434 12 490 2.5E-293 T 21-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS06210 d5888b50706f1302834a453054b48656 657 Pfam PF00361 Proton-conducting membrane transporter 135 427 7.9E-82 T 21-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RAF_RS06210 d5888b50706f1302834a453054b48656 657 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 67 123 2.3E-20 T 21-04-2016 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal RAF_RS06210 d5888b50706f1302834a453054b48656 657 PANTHER PTHR22773:SF50 1 554 2.9E-232 T 21-04-2016 RAF_RS06210 d5888b50706f1302834a453054b48656 657 PANTHER PTHR22773:SF50 570 604 2.9E-232 T 21-04-2016 RAF_RS06210 d5888b50706f1302834a453054b48656 657 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 6 650 1.4E-246 T 21-04-2016 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 RAF_RS06210 d5888b50706f1302834a453054b48656 657 PANTHER PTHR22773 1 554 2.9E-232 T 21-04-2016 RAF_RS06210 d5888b50706f1302834a453054b48656 657 PANTHER PTHR22773 570 604 2.9E-232 T 21-04-2016 RAF_RS06210 d5888b50706f1302834a453054b48656 657 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 86 106 1.3E-13 T 21-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RAF_RS06210 d5888b50706f1302834a453054b48656 657 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 420 442 1.3E-13 T 21-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RAF_RS06210 d5888b50706f1302834a453054b48656 657 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 504 525 1.3E-13 T 21-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RAF_RS06210 d5888b50706f1302834a453054b48656 657 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 271 293 1.3E-13 T 21-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RAF_RS06210 d5888b50706f1302834a453054b48656 657 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 84 109 7.2E-61 T 21-04-2016 RAF_RS06210 d5888b50706f1302834a453054b48656 657 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 253 279 7.2E-61 T 21-04-2016 RAF_RS06210 d5888b50706f1302834a453054b48656 657 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 112 132 7.2E-61 T 21-04-2016 RAF_RS06210 d5888b50706f1302834a453054b48656 657 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 159 180 7.2E-61 T 21-04-2016 RAF_RS06210 d5888b50706f1302834a453054b48656 657 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 321 333 7.2E-61 T 21-04-2016 RAF_RS06210 d5888b50706f1302834a453054b48656 657 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 231 252 7.2E-61 T 21-04-2016 RAF_RS06210 d5888b50706f1302834a453054b48656 657 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 421 440 7.2E-61 T 21-04-2016 RAF_RS02730 a87e2252bf2f7a1568e827a82fdb37e3 203 Pfam PF14520 Helix-hairpin-helix domain 71 128 2.3E-12 T 21-04-2016 RAF_RS02730 a87e2252bf2f7a1568e827a82fdb37e3 203 Gene3D G3DSA:1.10.150.20 66 140 1.8E-24 T 21-04-2016 RAF_RS02730 a87e2252bf2f7a1568e827a82fdb37e3 203 PANTHER PTHR33796 2 202 5.8E-54 T 21-04-2016 RAF_RS02730 a87e2252bf2f7a1568e827a82fdb37e3 203 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 197 1.3E-42 T 21-04-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 RAF_RS02730 a87e2252bf2f7a1568e827a82fdb37e3 203 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 200 29.216 T 21-04-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 RAF_RS02730 a87e2252bf2f7a1568e827a82fdb37e3 203 SUPERFAMILY SSF50249 1 62 2.23E-14 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS02730 a87e2252bf2f7a1568e827a82fdb37e3 203 SUPERFAMILY SSF47781 65 134 3.28E-18 T 21-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 RAF_RS02730 a87e2252bf2f7a1568e827a82fdb37e3 203 Gene3D G3DSA:2.40.50.140 1 63 8.7E-22 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS02730 a87e2252bf2f7a1568e827a82fdb37e3 203 Gene3D G3DSA:1.10.8.10 141 198 1.5E-17 T 21-04-2016 RAF_RS02730 a87e2252bf2f7a1568e827a82fdb37e3 203 SUPERFAMILY SSF46929 153 198 1.09E-12 T 21-04-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 RAF_RS02730 a87e2252bf2f7a1568e827a82fdb37e3 203 Pfam PF01330 RuvA N terminal domain 1 61 9.0E-18 T 21-04-2016 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 RAF_RS02730 a87e2252bf2f7a1568e827a82fdb37e3 203 Pfam PF07499 RuvA, C-terminal domain 154 197 4.2E-12 T 21-04-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 RAF_RS05185 d92daf9cfd94fa33e331f92e9f20d5e2 452 ProSitePatterns PS01134 FtsZ protein signature 1. 47 81 - T 21-04-2016 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 RAF_RS05185 d92daf9cfd94fa33e331f92e9f20d5e2 452 SMART SM00865 210 329 1.9E-58 T 21-04-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain RAF_RS05185 d92daf9cfd94fa33e331f92e9f20d5e2 452 Gene3D G3DSA:3.30.1330.20 218 325 3.1E-49 T 21-04-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain RAF_RS05185 d92daf9cfd94fa33e331f92e9f20d5e2 452 PRINTS PR00423 Cell division protein FtsZ signature 215 236 7.8E-51 T 21-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RAF_RS05185 d92daf9cfd94fa33e331f92e9f20d5e2 452 PRINTS PR00423 Cell division protein FtsZ signature 129 150 7.8E-51 T 21-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RAF_RS05185 d92daf9cfd94fa33e331f92e9f20d5e2 452 PRINTS PR00423 Cell division protein FtsZ signature 101 121 7.8E-51 T 21-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RAF_RS05185 d92daf9cfd94fa33e331f92e9f20d5e2 452 PRINTS PR00423 Cell division protein FtsZ signature 192 214 7.8E-51 T 21-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RAF_RS05185 d92daf9cfd94fa33e331f92e9f20d5e2 452 SMART SM00864 16 208 2.2E-107 T 21-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RAF_RS05185 d92daf9cfd94fa33e331f92e9f20d5e2 452 PANTHER PTHR30314 3 366 3.1E-171 T 21-04-2016 RAF_RS05185 d92daf9cfd94fa33e331f92e9f20d5e2 452 SUPERFAMILY SSF52490 16 211 8.11E-68 T 21-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RAF_RS05185 d92daf9cfd94fa33e331f92e9f20d5e2 452 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 12 387 37.33 T 21-04-2016 IPR000158 Cell division protein FtsZ GO:0005525 RAF_RS05185 d92daf9cfd94fa33e331f92e9f20d5e2 452 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 14 330 2.5E-121 T 21-04-2016 IPR000158 Cell division protein FtsZ GO:0005525 RAF_RS05185 d92daf9cfd94fa33e331f92e9f20d5e2 452 Gene3D G3DSA:3.40.50.1440 16 217 5.6E-92 T 21-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RAF_RS05185 d92daf9cfd94fa33e331f92e9f20d5e2 452 ProSitePatterns PS01135 FtsZ protein signature 2. 100 121 - T 21-04-2016 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 RAF_RS05185 d92daf9cfd94fa33e331f92e9f20d5e2 452 PANTHER PTHR30314:SF3 3 366 3.1E-171 T 21-04-2016 RAF_RS05185 d92daf9cfd94fa33e331f92e9f20d5e2 452 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 17 177 3.6E-40 T 21-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 RAF_RS05185 d92daf9cfd94fa33e331f92e9f20d5e2 452 Pfam PF12327 FtsZ family, C-terminal domain 225 321 3.1E-38 T 21-04-2016 IPR024757 Cell division protein FtsZ, C-terminal RAF_RS05185 d92daf9cfd94fa33e331f92e9f20d5e2 452 SUPERFAMILY SSF55307 207 325 6.18E-42 T 21-04-2016 IPR008280 Tubulin/FtsZ, C-terminal RAF_RS04325 6f87b6a0648baf6ecf1c008a1cadd658 474 SUPERFAMILY SSF52540 143 370 3.53E-42 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04325 6f87b6a0648baf6ecf1c008a1cadd658 474 Pfam PF00158 Sigma-54 interaction domain 145 305 2.6E-36 T 21-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RAF_RS04325 6f87b6a0648baf6ecf1c008a1cadd658 474 Pfam PF02954 Bacterial regulatory protein, Fis family 414 452 1.2E-7 T 21-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RAF_RS04325 6f87b6a0648baf6ecf1c008a1cadd658 474 SUPERFAMILY SSF52172 1 187 6.12E-37 T 21-04-2016 IPR011006 CheY-like superfamily RAF_RS04325 6f87b6a0648baf6ecf1c008a1cadd658 474 Gene3D G3DSA:1.10.10.60 408 455 7.8E-6 T 21-04-2016 IPR009057 Homeodomain-like GO:0003677 RAF_RS04325 6f87b6a0648baf6ecf1c008a1cadd658 474 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 352 361 - T 21-04-2016 IPR025944 Sigma-54 interaction domain, conserved site RAF_RS04325 6f87b6a0648baf6ecf1c008a1cadd658 474 SUPERFAMILY SSF46689 352 456 3.09E-10 T 21-04-2016 IPR009057 Homeodomain-like GO:0003677 RAF_RS04325 6f87b6a0648baf6ecf1c008a1cadd658 474 SMART SM00382 163 302 4.3E-5 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS04325 6f87b6a0648baf6ecf1c008a1cadd658 474 Gene3D G3DSA:1.10.8.60 312 392 1.8E-21 T 21-04-2016 RAF_RS04325 6f87b6a0648baf6ecf1c008a1cadd658 474 PANTHER PTHR32071:SF17 5 467 4.2E-148 T 21-04-2016 RAF_RS04325 6f87b6a0648baf6ecf1c008a1cadd658 474 Pfam PF00072 Response regulator receiver domain 6 114 9.9E-26 T 21-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RAF_RS04325 6f87b6a0648baf6ecf1c008a1cadd658 474 Gene3D G3DSA:3.40.50.2300 2 129 3.8E-33 T 21-04-2016 RAF_RS04325 6f87b6a0648baf6ecf1c008a1cadd658 474 SMART SM00448 4 117 6.2E-29 T 21-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RAF_RS04325 6f87b6a0648baf6ecf1c008a1cadd658 474 PANTHER PTHR32071 5 467 4.2E-148 T 21-04-2016 RAF_RS04325 6f87b6a0648baf6ecf1c008a1cadd658 474 Gene3D G3DSA:3.40.50.300 140 310 2.9E-38 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05660 51c5e2d8a97f0dd47758f1e9dc4a3fa6 229 PANTHER PTHR30231:SF0 1 227 1.4E-84 T 21-04-2016 RAF_RS05660 51c5e2d8a97f0dd47758f1e9dc4a3fa6 229 Gene3D G3DSA:3.30.420.10 3 178 3.7E-64 T 21-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RAF_RS05660 51c5e2d8a97f0dd47758f1e9dc4a3fa6 229 SUPERFAMILY SSF53098 3 176 1.45E-52 T 21-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RAF_RS05660 51c5e2d8a97f0dd47758f1e9dc4a3fa6 229 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 5 227 8.6E-101 T 21-04-2016 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAF_RS05660 51c5e2d8a97f0dd47758f1e9dc4a3fa6 229 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 6 218 2.5E-60 T 21-04-2016 IPR006054 DNA polymerase III, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAF_RS05660 51c5e2d8a97f0dd47758f1e9dc4a3fa6 229 SMART SM00479 5 178 1.1E-50 T 21-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III RAF_RS05660 51c5e2d8a97f0dd47758f1e9dc4a3fa6 229 PANTHER PTHR30231 1 227 1.4E-84 T 21-04-2016 RAF_RS05660 51c5e2d8a97f0dd47758f1e9dc4a3fa6 229 Pfam PF00929 Exonuclease 7 169 6.0E-42 T 21-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III RAF_RS05125 9185b5be5cf9c44d147cdac9b079986c 98 PANTHER PTHR11620 7 97 2.8E-22 T 21-04-2016 RAF_RS05125 9185b5be5cf9c44d147cdac9b079986c 98 Gene3D G3DSA:3.30.70.330 5 97 2.8E-32 T 21-04-2016 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 RAF_RS05125 9185b5be5cf9c44d147cdac9b079986c 98 SUPERFAMILY SSF54189 5 95 1.01E-29 T 21-04-2016 IPR012678 Ribosomal protein L23/L15e core domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05125 9185b5be5cf9c44d147cdac9b079986c 98 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 7 96 21.514 T 21-04-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 RAF_RS05125 9185b5be5cf9c44d147cdac9b079986c 98 Pfam PF00276 Ribosomal protein L23 8 93 2.0E-28 T 21-04-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 RAF_RS01510 c1ac0dbe77c9ebdcba0d7e1223d5a571 86 SUPERFAMILY SSF143011 2 80 2.09E-16 T 21-04-2016 RAF_RS01510 c1ac0dbe77c9ebdcba0d7e1223d5a571 86 Pfam PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system 22 82 4.5E-9 T 21-04-2016 IPR009614 Toxin YoeB GO:0004519|GO:0006401 RAF_RS01510 c1ac0dbe77c9ebdcba0d7e1223d5a571 86 TIGRFAM TIGR02116 toxin_Txe_YoeB: addiction module toxin, Txe/YoeB family 6 85 6.9E-31 T 21-04-2016 IPR009614 Toxin YoeB GO:0004519|GO:0006401 RAF_RS03385 917f5e1889854fb59b9d7e0679a13df3 91 SUPERFAMILY SSF47060 3 89 5.89E-34 T 21-04-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 RAF_RS03385 917f5e1889854fb59b9d7e0679a13df3 91 Gene3D G3DSA:1.10.287.10 3 89 3.6E-36 T 21-04-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 RAF_RS03385 917f5e1889854fb59b9d7e0679a13df3 91 Pfam PF00312 Ribosomal protein S15 8 88 6.0E-35 T 21-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS03385 917f5e1889854fb59b9d7e0679a13df3 91 PANTHER PTHR23321 1 90 2.1E-37 T 21-04-2016 RAF_RS03385 917f5e1889854fb59b9d7e0679a13df3 91 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 4 89 1.3E-40 T 21-04-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 RAF_RS03385 917f5e1889854fb59b9d7e0679a13df3 91 SMART SM01387 8 88 1.3E-47 T 21-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS03385 917f5e1889854fb59b9d7e0679a13df3 91 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 21-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS03385 917f5e1889854fb59b9d7e0679a13df3 91 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 21.829 T 21-04-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 RAF_RS03385 917f5e1889854fb59b9d7e0679a13df3 91 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 12 88 3.0E-28 T 21-04-2016 RAF_RS00820 010e260b5135082ec437c4fe46d36d38 157 SUPERFAMILY SSF53098 1 154 5.82E-42 T 21-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RAF_RS00820 010e260b5135082ec437c4fe46d36d38 157 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 3 150 1.0E-34 T 21-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RAF_RS00820 010e260b5135082ec437c4fe46d36d38 157 Gene3D G3DSA:3.30.420.10 1 155 2.6E-49 T 21-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RAF_RS00820 010e260b5135082ec437c4fe46d36d38 157 PANTHER PTHR30194 1 150 1.9E-57 T 21-04-2016 RAF_RS00820 010e260b5135082ec437c4fe46d36d38 157 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 113 148 - T 21-04-2016 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 RAF_RS00820 010e260b5135082ec437c4fe46d36d38 157 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 3 150 7.9E-39 T 21-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RAF_RS00820 010e260b5135082ec437c4fe46d36d38 157 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 1 154 40.97 T 21-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RAF_RS00820 010e260b5135082ec437c4fe46d36d38 157 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 4 17 1.1E-20 T 21-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RAF_RS00820 010e260b5135082ec437c4fe46d36d38 157 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 61 77 1.1E-20 T 21-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RAF_RS00820 010e260b5135082ec437c4fe46d36d38 157 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 107 126 1.1E-20 T 21-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RAF_RS00820 010e260b5135082ec437c4fe46d36d38 157 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 139 151 1.1E-20 T 21-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RAF_RS00820 010e260b5135082ec437c4fe46d36d38 157 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 83 99 1.1E-20 T 21-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RAF_RS06600 586dd42f3727dd9a6ed4ff120c8ae723 152 Gene3D G3DSA:2.40.50.140 2 152 5.5E-48 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS06600 586dd42f3727dd9a6ed4ff120c8ae723 152 PIRSF PIRSF002070 1 151 3.4E-34 T 21-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 RAF_RS06600 586dd42f3727dd9a6ed4ff120c8ae723 152 Hamap MF_00984 Single-stranded DNA-binding protein. 5 118 33.89 T 21-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 RAF_RS06600 586dd42f3727dd9a6ed4ff120c8ae723 152 PANTHER PTHR10302 1 130 1.5E-41 T 21-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 RAF_RS06600 586dd42f3727dd9a6ed4ff120c8ae723 152 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 136 1.4E-40 T 21-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 RAF_RS06600 586dd42f3727dd9a6ed4ff120c8ae723 152 Pfam PF00436 Single-strand binding protein family 5 108 2.1E-37 T 21-04-2016 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 RAF_RS06600 586dd42f3727dd9a6ed4ff120c8ae723 152 SUPERFAMILY SSF50249 4 152 1.95E-44 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS01865 77855c675138439ec83ce222ce6ee2c2 251 Gene3D G3DSA:1.10.760.10 23 216 2.0E-84 T 21-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RAF_RS01865 77855c675138439ec83ce222ce6ee2c2 251 Gene3D G3DSA:1.20.5.100 217 251 1.1E-15 T 21-04-2016 RAF_RS01865 77855c675138439ec83ce222ce6ee2c2 251 PANTHER PTHR10266 6 251 3.0E-137 T 21-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RAF_RS01865 77855c675138439ec83ce222ce6ee2c2 251 SUPERFAMILY SSF46626 23 215 1.01E-72 T 21-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 RAF_RS01865 77855c675138439ec83ce222ce6ee2c2 251 Pfam PF02167 Cytochrome C1 family 32 249 1.4E-100 T 21-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RAF_RS01865 77855c675138439ec83ce222ce6ee2c2 251 PANTHER PTHR10266:SF3 6 251 3.0E-137 T 21-04-2016 RAF_RS01865 77855c675138439ec83ce222ce6ee2c2 251 SUPERFAMILY SSF81496 216 251 1.83E-5 T 21-04-2016 IPR021157 Cytochrome c1, transmembrane anchor, C-terminal RAF_RS01865 77855c675138439ec83ce222ce6ee2c2 251 PRINTS PR00603 Cytochrome C1 signature 50 69 1.1E-64 T 21-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RAF_RS01865 77855c675138439ec83ce222ce6ee2c2 251 PRINTS PR00603 Cytochrome C1 signature 30 49 1.1E-64 T 21-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RAF_RS01865 77855c675138439ec83ce222ce6ee2c2 251 PRINTS PR00603 Cytochrome C1 signature 128 152 1.1E-64 T 21-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RAF_RS01865 77855c675138439ec83ce222ce6ee2c2 251 PRINTS PR00603 Cytochrome C1 signature 216 231 1.1E-64 T 21-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RAF_RS01865 77855c675138439ec83ce222ce6ee2c2 251 PRINTS PR00603 Cytochrome C1 signature 166 177 1.1E-64 T 21-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RAF_RS01865 77855c675138439ec83ce222ce6ee2c2 251 PRINTS PR00603 Cytochrome C1 signature 177 196 1.1E-64 T 21-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RAF_RS01865 77855c675138439ec83ce222ce6ee2c2 251 PRINTS PR00603 Cytochrome C1 signature 95 115 1.1E-64 T 21-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RAF_RS01865 77855c675138439ec83ce222ce6ee2c2 251 PRINTS PR00603 Cytochrome C1 signature 197 216 1.1E-64 T 21-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 RAF_RS03555 f160ecf5349a08daad38452b6a5fa59f 304 PANTHER PTHR33209 7 260 3.1E-66 T 21-04-2016 RAF_RS03555 f160ecf5349a08daad38452b6a5fa59f 304 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 54 259 7.2E-83 T 21-04-2016 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 RAF_RS03555 f160ecf5349a08daad38452b6a5fa59f 304 Pfam PF01343 Peptidase family S49 111 260 1.3E-45 T 21-04-2016 IPR002142 Peptidase S49 GO:0006508|GO:0008233 RAF_RS03555 f160ecf5349a08daad38452b6a5fa59f 304 SUPERFAMILY SSF52096 186 248 5.47E-37 T 21-04-2016 IPR029045 ClpP/crotonase-like domain RAF_RS03555 f160ecf5349a08daad38452b6a5fa59f 304 SUPERFAMILY SSF52096 46 157 5.47E-37 T 21-04-2016 IPR029045 ClpP/crotonase-like domain RAF_RS03555 f160ecf5349a08daad38452b6a5fa59f 304 Gene3D G3DSA:3.90.226.10 187 261 9.6E-42 T 21-04-2016 IPR029045 ClpP/crotonase-like domain RAF_RS03555 f160ecf5349a08daad38452b6a5fa59f 304 Gene3D G3DSA:3.90.226.10 38 149 9.6E-42 T 21-04-2016 IPR029045 ClpP/crotonase-like domain RAF_RS04500 502ef9eae84131a3d183031f6510e1bb 286 Pfam PF13242 HAD-hyrolase-like 200 284 2.3E-19 T 21-04-2016 RAF_RS04500 502ef9eae84131a3d183031f6510e1bb 286 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 19 249 6.7E-63 T 21-04-2016 IPR006357 HAD-superfamily hydrolase, subfamily IIA RAF_RS04500 502ef9eae84131a3d183031f6510e1bb 286 SUPERFAMILY SSF56784 11 258 5.48E-34 T 21-04-2016 IPR023214 HAD-like domain RAF_RS04500 502ef9eae84131a3d183031f6510e1bb 286 PANTHER PTHR19288 6 284 9.4E-42 T 21-04-2016 RAF_RS04500 502ef9eae84131a3d183031f6510e1bb 286 PANTHER PTHR19288:SF3 6 284 9.4E-42 T 21-04-2016 RAF_RS04500 502ef9eae84131a3d183031f6510e1bb 286 Gene3D G3DSA:3.40.50.1000 198 283 1.8E-32 T 21-04-2016 IPR023214 HAD-like domain RAF_RS04500 502ef9eae84131a3d183031f6510e1bb 286 Gene3D G3DSA:3.40.50.1000 5 82 1.8E-32 T 21-04-2016 IPR023214 HAD-like domain RAF_RS04500 502ef9eae84131a3d183031f6510e1bb 286 TIGRFAM TIGR01459 HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family 9 248 1.3E-110 T 21-04-2016 IPR006356 HAD-superfamily hydrolase, subfamily IIA, hypothetical 3 RAF_RS04500 502ef9eae84131a3d183031f6510e1bb 286 Pfam PF13344 Haloacid dehalogenase-like hydrolase 19 95 2.8E-10 T 21-04-2016 IPR006357 HAD-superfamily hydrolase, subfamily IIA RAF_RS02840 af05679ff117436d29b53ab3e800339b 242 PANTHER PTHR11922 88 239 6.4E-51 T 21-04-2016 RAF_RS02840 af05679ff117436d29b53ab3e800339b 242 PANTHER PTHR11922 32 72 6.4E-51 T 21-04-2016 RAF_RS02840 af05679ff117436d29b53ab3e800339b 242 Pfam PF07722 Peptidase C26 5 222 1.6E-71 T 21-04-2016 IPR011697 Peptidase C26 GO:0006541|GO:0016787 RAF_RS02840 af05679ff117436d29b53ab3e800339b 242 Gene3D G3DSA:3.40.50.880 3 240 6.7E-69 T 21-04-2016 IPR029062 Class I glutamine amidotransferase-like RAF_RS02840 af05679ff117436d29b53ab3e800339b 242 PANTHER PTHR11922:SF18 88 239 6.4E-51 T 21-04-2016 RAF_RS02840 af05679ff117436d29b53ab3e800339b 242 PANTHER PTHR11922:SF18 32 72 6.4E-51 T 21-04-2016 RAF_RS02840 af05679ff117436d29b53ab3e800339b 242 SUPERFAMILY SSF52317 27 240 1.17E-44 T 21-04-2016 IPR029062 Class I glutamine amidotransferase-like RAF_RS02350 95fc0c67331f2d61c0f2fe256c171361 284 Gene3D G3DSA:3.40.50.720 1 238 8.0E-30 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS02350 95fc0c67331f2d61c0f2fe256c171361 284 PANTHER PTHR10491 1 280 5.9E-50 T 21-04-2016 IPR005913 dTDP-4-dehydrorhamnose reductase family RAF_RS02350 95fc0c67331f2d61c0f2fe256c171361 284 PANTHER PTHR10491:SF4 1 280 5.9E-50 T 21-04-2016 RAF_RS02350 95fc0c67331f2d61c0f2fe256c171361 284 SUPERFAMILY SSF51735 1 281 2.61E-57 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS02350 95fc0c67331f2d61c0f2fe256c171361 284 Pfam PF04321 RmlD substrate binding domain 1 281 4.0E-27 T 21-04-2016 IPR029903 RmlD-like substrate binding domain RAF_RS00805 69cceec491e04d4911a5d6d29eec6552 266 PANTHER PTHR12383 85 152 2.6E-56 T 21-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RAF_RS00805 69cceec491e04d4911a5d6d29eec6552 266 PANTHER PTHR12383 20 66 2.6E-56 T 21-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RAF_RS00805 69cceec491e04d4911a5d6d29eec6552 266 PANTHER PTHR12383 168 264 2.6E-56 T 21-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RAF_RS00805 69cceec491e04d4911a5d6d29eec6552 266 Pfam PF00717 Peptidase S24-like 40 130 4.7E-21 T 21-04-2016 IPR019759 Peptidase S24/S26A/S26B RAF_RS00805 69cceec491e04d4911a5d6d29eec6552 266 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 21 227 2.9E-46 T 21-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RAF_RS00805 69cceec491e04d4911a5d6d29eec6552 266 SUPERFAMILY SSF51306 32 259 3.4E-51 T 21-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C RAF_RS00805 69cceec491e04d4911a5d6d29eec6552 266 Gene3D G3DSA:2.10.109.10 30 116 1.8E-40 T 21-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain RAF_RS00805 69cceec491e04d4911a5d6d29eec6552 266 Gene3D G3DSA:2.10.109.10 186 232 1.8E-40 T 21-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain RAF_RS00805 69cceec491e04d4911a5d6d29eec6552 266 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 106 118 7.4E-21 T 21-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RAF_RS00805 69cceec491e04d4911a5d6d29eec6552 266 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 186 205 7.4E-21 T 21-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RAF_RS00805 69cceec491e04d4911a5d6d29eec6552 266 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 34 50 7.4E-21 T 21-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RAF_RS00805 69cceec491e04d4911a5d6d29eec6552 266 ProSitePatterns PS00760 Signal peptidases I lysine active site. 108 120 - T 21-04-2016 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 RAF_RS00805 69cceec491e04d4911a5d6d29eec6552 266 ProSitePatterns PS00761 Signal peptidases I signature 3. 191 204 - T 21-04-2016 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 RAF_RS00805 69cceec491e04d4911a5d6d29eec6552 266 PANTHER PTHR12383:SF27 85 152 2.6E-56 T 21-04-2016 RAF_RS00805 69cceec491e04d4911a5d6d29eec6552 266 PANTHER PTHR12383:SF27 20 66 2.6E-56 T 21-04-2016 RAF_RS00805 69cceec491e04d4911a5d6d29eec6552 266 PANTHER PTHR12383:SF27 168 264 2.6E-56 T 21-04-2016 RAF_RS05060 0792b047e5e7de959d9850562593fbc9 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 4.57E-25 T 21-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RAF_RS05060 0792b047e5e7de959d9850562593fbc9 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 4.57E-25 T 21-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RAF_RS05060 0792b047e5e7de959d9850562593fbc9 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 4.57E-25 T 21-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RAF_RS05060 0792b047e5e7de959d9850562593fbc9 177 PANTHER PTHR11655 1 176 5.9E-71 T 21-04-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 RAF_RS05060 0792b047e5e7de959d9850562593fbc9 177 PANTHER PTHR11655:SF14 1 176 5.9E-71 T 21-04-2016 RAF_RS05060 0792b047e5e7de959d9850562593fbc9 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 21-04-2016 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05060 0792b047e5e7de959d9850562593fbc9 177 SUPERFAMILY SSF56053 1 82 1.31E-23 T 21-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RAF_RS05060 0792b047e5e7de959d9850562593fbc9 177 Gene3D G3DSA:3.90.930.12 2 82 2.4E-28 T 21-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RAF_RS05060 0792b047e5e7de959d9850562593fbc9 177 PIRSF PIRSF002162 1 177 3.2E-49 T 21-04-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 RAF_RS05060 0792b047e5e7de959d9850562593fbc9 177 Gene3D G3DSA:3.90.930.12 83 176 3.5E-34 T 21-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RAF_RS05060 0792b047e5e7de959d9850562593fbc9 177 Pfam PF00347 Ribosomal protein L6 91 163 5.7E-16 T 21-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RAF_RS05060 0792b047e5e7de959d9850562593fbc9 177 Pfam PF00347 Ribosomal protein L6 11 82 8.8E-17 T 21-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RAF_RS05060 0792b047e5e7de959d9850562593fbc9 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 33.128 T 21-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RAF_RS05060 0792b047e5e7de959d9850562593fbc9 177 SUPERFAMILY SSF56053 83 176 1.83E-31 T 21-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 RAF_RS05060 0792b047e5e7de959d9850562593fbc9 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 2.0E-66 T 21-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RAF_RS02135 9613415bec920b228363bfc42cb0406c 365 Gene3D G3DSA:2.30.30.280 223 279 1.8E-19 T 21-04-2016 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 RAF_RS02135 9613415bec920b228363bfc42cb0406c 365 Gene3D G3DSA:2.40.30.10 283 363 1.2E-21 T 21-04-2016 RAF_RS02135 9613415bec920b228363bfc42cb0406c 365 SUPERFAMILY SSF52402 7 251 8.16E-53 T 21-04-2016 RAF_RS02135 9613415bec920b228363bfc42cb0406c 365 PANTHER PTHR11933 11 365 4.4E-172 T 21-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 RAF_RS02135 9613415bec920b228363bfc42cb0406c 365 PANTHER PTHR11933:SF10 11 365 4.4E-172 T 21-04-2016 RAF_RS02135 9613415bec920b228363bfc42cb0406c 365 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 9 361 39.563 T 21-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 RAF_RS02135 9613415bec920b228363bfc42cb0406c 365 Pfam PF03054 tRNA methyl transferase 10 360 2.3E-128 T 21-04-2016 RAF_RS02135 9613415bec920b228363bfc42cb0406c 365 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 10 360 1.2E-105 T 21-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 RAF_RS02135 9613415bec920b228363bfc42cb0406c 365 Gene3D G3DSA:3.40.50.620 6 216 2.4E-82 T 21-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS00170 848e0930d2ba1890ef17aff443ad0d1a 173 SUPERFAMILY SSF141259 9 77 7.32E-16 T 21-04-2016 IPR003711 CarD-like/TRCF domain RAF_RS00170 848e0930d2ba1890ef17aff443ad0d1a 173 SMART SM01058 12 122 7.0E-33 T 21-04-2016 IPR003711 CarD-like/TRCF domain RAF_RS00170 848e0930d2ba1890ef17aff443ad0d1a 173 Pfam PF02559 CarD-like/TRCF domain 13 120 1.0E-12 T 21-04-2016 IPR003711 CarD-like/TRCF domain RAF_RS00170 848e0930d2ba1890ef17aff443ad0d1a 173 PANTHER PTHR38447 1 167 6.4E-39 T 21-04-2016 RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 SMART SM00387 39 184 5.4E-29 T 21-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 SUPERFAMILY SSF56719 405 570 8.89E-81 T 21-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 SUPERFAMILY SSF56719 733 799 8.89E-81 T 21-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 13 807 6.5E-302 T 21-04-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 ProSitePatterns PS00177 DNA topoisomerase II signature. 433 441 - T 21-04-2016 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 Gene3D G3DSA:3.30.565.10 13 224 5.8E-86 T 21-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 SUPERFAMILY SSF54211 231 402 1.82E-53 T 21-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 Gene3D G3DSA:3.30.230.10 230 403 5.1E-67 T 21-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 Pfam PF01751 Toprim domain 430 541 2.5E-18 T 21-04-2016 IPR006171 Toprim domain RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 Pfam PF00204 DNA gyrase B 231 401 1.2E-55 T 21-04-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 735 796 8.8E-27 T 21-04-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 SUPERFAMILY SSF55874 13 222 7.07E-70 T 21-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 PRINTS PR00418 DNA topoisomerase II family signature 497 513 9.6E-72 T 21-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 PRINTS PR00418 DNA topoisomerase II family signature 431 445 9.6E-72 T 21-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 PRINTS PR00418 DNA topoisomerase II family signature 535 547 9.6E-72 T 21-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 PRINTS PR00418 DNA topoisomerase II family signature 279 292 9.6E-72 T 21-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 PRINTS PR00418 DNA topoisomerase II family signature 739 755 9.6E-72 T 21-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 PRINTS PR00418 DNA topoisomerase II family signature 515 532 9.6E-72 T 21-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 PRINTS PR00418 DNA topoisomerase II family signature 121 135 9.6E-72 T 21-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 PRINTS PR00418 DNA topoisomerase II family signature 78 91 9.6E-72 T 21-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 PRINTS PR00418 DNA topoisomerase II family signature 43 58 9.6E-72 T 21-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 PRINTS PR01159 DNA gyrase subunit B signature 481 490 1.1E-68 T 21-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 PRINTS PR01159 DNA gyrase subunit B signature 323 339 1.1E-68 T 21-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 PRINTS PR01159 DNA gyrase subunit B signature 371 385 1.1E-68 T 21-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 PRINTS PR01159 DNA gyrase subunit B signature 13 23 1.1E-68 T 21-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 PRINTS PR01159 DNA gyrase subunit B signature 204 217 1.1E-68 T 21-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 PRINTS PR01159 DNA gyrase subunit B signature 189 204 1.1E-68 T 21-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 PRINTS PR01159 DNA gyrase subunit B signature 760 772 1.1E-68 T 21-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 PRINTS PR01159 DNA gyrase subunit B signature 253 271 1.1E-68 T 21-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 PRINTS PR01159 DNA gyrase subunit B signature 776 792 1.1E-68 T 21-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 PRINTS PR01159 DNA gyrase subunit B signature 230 252 1.1E-68 T 21-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 PRINTS PR01159 DNA gyrase subunit B signature 385 405 1.1E-68 T 21-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 39 182 4.4E-25 T 21-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 PANTHER PTHR10169 1 563 8.3E-268 T 21-04-2016 RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 PANTHER PTHR10169 724 807 8.3E-268 T 21-04-2016 RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 SMART SM00433 43 800 1.5E-249 T 21-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 Gene3D G3DSA:3.40.50.670 415 560 8.2E-90 T 21-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 Gene3D G3DSA:3.40.50.670 724 789 8.2E-90 T 21-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 RAF_RS04495 5ad8094fcdd4718ba2b926175cfb5bea 807 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 10 807 112.945 T 21-04-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RAF_RS04480 e979c24e118ae986f1b5d1544faebbff 131 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 3 124 25.478 T 21-04-2016 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RAF_RS04480 e979c24e118ae986f1b5d1544faebbff 131 SUPERFAMILY SSF56214 1 123 1.02E-27 T 21-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RAF_RS04480 e979c24e118ae986f1b5d1544faebbff 131 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 8 88 1.0E-39 T 21-04-2016 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RAF_RS04480 e979c24e118ae986f1b5d1544faebbff 131 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 4 117 8.0E-20 T 21-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RAF_RS04480 e979c24e118ae986f1b5d1544faebbff 131 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 1 125 6.1E-32 T 21-04-2016 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RAF_RS04480 e979c24e118ae986f1b5d1544faebbff 131 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 3 124 1.3E-25 T 21-04-2016 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RAF_RS04480 e979c24e118ae986f1b5d1544faebbff 131 Gene3D G3DSA:3.90.470.20 1 124 4.2E-34 T 21-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 RAF_RS04285 19f019ccbf8da580634778ee08c0061d 155 PANTHER PTHR23309 4 155 7.5E-36 T 21-04-2016 RAF_RS04285 19f019ccbf8da580634778ee08c0061d 155 Gene3D G3DSA:3.40.50.720 3 154 3.8E-25 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS04285 19f019ccbf8da580634778ee08c0061d 155 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 7 154 1.1E-31 T 21-04-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 RAF_RS04285 19f019ccbf8da580634778ee08c0061d 155 PANTHER PTHR23309:SF2 4 155 7.5E-36 T 21-04-2016 RAF_RS04285 19f019ccbf8da580634778ee08c0061d 155 SUPERFAMILY SSF51735 4 154 2.12E-32 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS03170 a0ec018535874fcb857a963f74ad0798 310 Gene3D G3DSA:3.50.50.60 233 304 2.8E-7 T 21-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAF_RS03170 a0ec018535874fcb857a963f74ad0798 310 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 283 2.9E-38 T 21-04-2016 RAF_RS03170 a0ec018535874fcb857a963f74ad0798 310 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 2.9E-38 T 21-04-2016 RAF_RS03170 a0ec018535874fcb857a963f74ad0798 310 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 2.9E-38 T 21-04-2016 RAF_RS03170 a0ec018535874fcb857a963f74ad0798 310 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 105 123 2.9E-38 T 21-04-2016 RAF_RS03170 a0ec018535874fcb857a963f74ad0798 310 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 234 250 2.9E-38 T 21-04-2016 RAF_RS03170 a0ec018535874fcb857a963f74ad0798 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 60 70 3.9E-75 T 21-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAF_RS03170 a0ec018535874fcb857a963f74ad0798 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 271 289 3.9E-75 T 21-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAF_RS03170 a0ec018535874fcb857a963f74ad0798 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 143 167 3.9E-75 T 21-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAF_RS03170 a0ec018535874fcb857a963f74ad0798 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 195 211 3.9E-75 T 21-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAF_RS03170 a0ec018535874fcb857a963f74ad0798 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 6 28 3.9E-75 T 21-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAF_RS03170 a0ec018535874fcb857a963f74ad0798 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 39 54 3.9E-75 T 21-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAF_RS03170 a0ec018535874fcb857a963f74ad0798 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 106 114 3.9E-75 T 21-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAF_RS03170 a0ec018535874fcb857a963f74ad0798 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 128 140 3.9E-75 T 21-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAF_RS03170 a0ec018535874fcb857a963f74ad0798 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 236 257 3.9E-75 T 21-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAF_RS03170 a0ec018535874fcb857a963f74ad0798 310 Gene3D G3DSA:3.50.50.60 119 232 3.2E-33 T 21-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAF_RS03170 a0ec018535874fcb857a963f74ad0798 310 SUPERFAMILY SSF51905 1 308 1.3E-50 T 21-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAF_RS03170 a0ec018535874fcb857a963f74ad0798 310 PANTHER PTHR22912 1 309 6.2E-159 T 21-04-2016 RAF_RS03170 a0ec018535874fcb857a963f74ad0798 310 PANTHER PTHR22912:SF48 1 309 6.2E-159 T 21-04-2016 RAF_RS03170 a0ec018535874fcb857a963f74ad0798 310 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 297 4.8E-49 T 21-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAF_RS03170 a0ec018535874fcb857a963f74ad0798 310 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 6 308 2.1E-131 T 21-04-2016 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00240+1.8.1.9|KEGG: 00450+1.8.1.9 RAF_RS03170 a0ec018535874fcb857a963f74ad0798 310 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 135 155 - T 21-04-2016 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 RAF_RS03170 a0ec018535874fcb857a963f74ad0798 310 Gene3D G3DSA:3.50.50.60 3 118 7.7E-33 T 21-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAF_RS00365 006fcec7ac448a2ddc341007de0c7d40 261 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 32 252 1.4E-84 T 21-04-2016 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 RAF_RS00365 006fcec7ac448a2ddc341007de0c7d40 261 Gene3D G3DSA:3.10.20.30 22 128 1.4E-41 T 21-04-2016 IPR012675 Beta-grasp domain RAF_RS00365 006fcec7ac448a2ddc341007de0c7d40 261 SUPERFAMILY SSF54292 27 128 3.67E-32 T 21-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RAF_RS00365 006fcec7ac448a2ddc341007de0c7d40 261 PANTHER PTHR11921:SF27 28 258 1.7E-160 T 21-04-2016 RAF_RS00365 006fcec7ac448a2ddc341007de0c7d40 261 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 29 133 3.0E-33 T 21-04-2016 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 RAF_RS00365 006fcec7ac448a2ddc341007de0c7d40 261 SUPERFAMILY SSF46548 129 258 4.01E-39 T 21-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 RAF_RS00365 006fcec7ac448a2ddc341007de0c7d40 261 Gene3D G3DSA:1.10.1060.10 129 258 3.0E-50 T 21-04-2016 RAF_RS00365 006fcec7ac448a2ddc341007de0c7d40 261 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 171 182 - T 21-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RAF_RS00365 006fcec7ac448a2ddc341007de0c7d40 261 PANTHER PTHR11921 28 258 1.7E-160 T 21-04-2016 RAF_RS00365 006fcec7ac448a2ddc341007de0c7d40 261 Pfam PF13534 4Fe-4S dicluster domain 170 243 3.9E-9 T 21-04-2016 RAF_RS00365 006fcec7ac448a2ddc341007de0c7d40 261 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 80 88 - T 21-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RAF_RS06115 22a52316f52cb5c7babba931345da4ff 276 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 12 22 - T 21-04-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RAF_RS06115 22a52316f52cb5c7babba931345da4ff 276 SUPERFAMILY SSF55973 6 128 5.49E-52 T 21-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RAF_RS06115 22a52316f52cb5c7babba931345da4ff 276 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 129 268 2.4E-63 T 21-04-2016 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RAF_RS06115 22a52316f52cb5c7babba931345da4ff 276 Gene3D G3DSA:3.30.300.10 24 129 2.7E-42 T 21-04-2016 RAF_RS06115 22a52316f52cb5c7babba931345da4ff 276 PANTHER PTHR11964 1 274 8.5E-161 T 21-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RAF_RS06115 22a52316f52cb5c7babba931345da4ff 276 Gene3D G3DSA:3.30.300.10 141 275 2.1E-63 T 21-04-2016 RAF_RS06115 22a52316f52cb5c7babba931345da4ff 276 SUPERFAMILY SSF55973 129 275 3.92E-63 T 21-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RAF_RS06115 22a52316f52cb5c7babba931345da4ff 276 Pfam PF02772 S-adenosylmethionine synthetase, central domain 10 127 1.4E-44 T 21-04-2016 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RAF_RS06115 22a52316f52cb5c7babba931345da4ff 276 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 2 275 6.3E-126 T 21-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RAF_RS03125 c9f5af45c1596c2807ab49a694ef83af 120 PANTHER PTHR33515 11 120 1.8E-17 T 21-04-2016 RAF_RS03125 c9f5af45c1596c2807ab49a694ef83af 120 Pfam PF02033 Ribosome-binding factor A 11 117 1.4E-20 T 21-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 RAF_RS03125 c9f5af45c1596c2807ab49a694ef83af 120 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 13 104 1.0E-46 T 21-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 RAF_RS03125 c9f5af45c1596c2807ab49a694ef83af 120 ProSitePatterns PS01319 Ribosome-binding factor A signature. 83 104 - T 21-04-2016 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 RAF_RS03125 c9f5af45c1596c2807ab49a694ef83af 120 SUPERFAMILY SSF89919 7 119 2.35E-28 T 21-04-2016 IPR023799 Ribosome-binding factor A domain RAF_RS03125 c9f5af45c1596c2807ab49a694ef83af 120 Gene3D G3DSA:3.30.300.20 8 119 1.6E-23 T 21-04-2016 IPR015946 K homology domain-like, alpha/beta RAF_RS03125 c9f5af45c1596c2807ab49a694ef83af 120 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 10 120 5.4E-16 T 21-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 RAF_RS03125 c9f5af45c1596c2807ab49a694ef83af 120 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 7 120 15.105 T 21-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 RAF_RS01740 c70e7e510d33d1dd58fc78627076358c 267 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 43 265 21.111 T 21-04-2016 IPR026579 Cell division protein FtsQ GO:0000917 RAF_RS01740 c70e7e510d33d1dd58fc78627076358c 267 PANTHER PTHR35851 18 257 2.4E-19 T 21-04-2016 RAF_RS01740 c70e7e510d33d1dd58fc78627076358c 267 Pfam PF08478 POTRA domain, FtsQ-type 73 141 2.0E-18 T 21-04-2016 IPR013685 Polypeptide-transport-associated, FtsQ-type RAF_RS01740 c70e7e510d33d1dd58fc78627076358c 267 PANTHER PTHR35851:SF1 18 257 2.4E-19 T 21-04-2016 RAF_RS01740 c70e7e510d33d1dd58fc78627076358c 267 Pfam PF03799 Cell division protein FtsQ 145 257 1.1E-9 T 21-04-2016 IPR005548 Cell division protein FtsQ/DivIB RAF_RS00550 d0eb317fdd9518244559274b4d366a2e 244 SUPERFAMILY SSF56925 81 244 7.32E-10 T 21-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RAF_RS00550 d0eb317fdd9518244559274b4d366a2e 244 PANTHER PTHR36920 137 244 3.3E-13 T 21-04-2016 RAF_RS00550 d0eb317fdd9518244559274b4d366a2e 244 Pfam PF03922 OmpW family 44 244 3.6E-55 T 21-04-2016 IPR005618 Outer membrane protein, OmpW GO:0019867 RAF_RS00550 d0eb317fdd9518244559274b4d366a2e 244 PANTHER PTHR36920:SF1 137 244 3.3E-13 T 21-04-2016 RAF_RS00550 d0eb317fdd9518244559274b4d366a2e 244 Gene3D G3DSA:2.40.160.20 44 244 8.0E-27 T 21-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RAF_RS05910 793ed88ff8228fd6b15f3fe09ba18ffe 105 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 102 1.0E-31 T 21-04-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05910 793ed88ff8228fd6b15f3fe09ba18ffe 105 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 102 1.5E-37 T 21-04-2016 IPR028909 Ribosomal protein L21-like GO:0005840 RAF_RS05910 793ed88ff8228fd6b15f3fe09ba18ffe 105 SUPERFAMILY SSF141091 1 102 5.62E-36 T 21-04-2016 IPR028909 Ribosomal protein L21-like GO:0005840 RAF_RS05910 793ed88ff8228fd6b15f3fe09ba18ffe 105 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 104 26.079 T 21-04-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05910 793ed88ff8228fd6b15f3fe09ba18ffe 105 PANTHER PTHR21349 1 102 2.1E-36 T 21-04-2016 RAF_RS05910 793ed88ff8228fd6b15f3fe09ba18ffe 105 ProSitePatterns PS01169 Ribosomal protein L21 signature. 73 95 - T 21-04-2016 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS06005 4af3ee1fa21c260be1898841ef32718d 343 PANTHER PTHR22942 6 336 2.9E-200 T 21-04-2016 RAF_RS06005 4af3ee1fa21c260be1898841ef32718d 343 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 5 325 3.5E-171 T 21-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RAF_RS06005 4af3ee1fa21c260be1898841ef32718d 343 Gene3D G3DSA:3.30.250.10 269 326 4.9E-29 T 21-04-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal RAF_RS06005 4af3ee1fa21c260be1898841ef32718d 343 SMART SM00382 58 229 3.1E-12 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS06005 4af3ee1fa21c260be1898841ef32718d 343 Gene3D G3DSA:3.40.50.300 29 268 6.4E-83 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06005 4af3ee1fa21c260be1898841ef32718d 343 Hamap MF_00268 Protein RecA [recA]. 6 330 51.414 T 21-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RAF_RS06005 4af3ee1fa21c260be1898841ef32718d 343 PRINTS PR00142 RecA protein signature 298 315 2.0E-85 T 21-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RAF_RS06005 4af3ee1fa21c260be1898841ef32718d 343 PRINTS PR00142 RecA protein signature 211 239 2.0E-85 T 21-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RAF_RS06005 4af3ee1fa21c260be1898841ef32718d 343 PRINTS PR00142 RecA protein signature 128 157 2.0E-85 T 21-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RAF_RS06005 4af3ee1fa21c260be1898841ef32718d 343 PRINTS PR00142 RecA protein signature 94 123 2.0E-85 T 21-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RAF_RS06005 4af3ee1fa21c260be1898841ef32718d 343 PRINTS PR00142 RecA protein signature 244 273 2.0E-85 T 21-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RAF_RS06005 4af3ee1fa21c260be1898841ef32718d 343 PRINTS PR00142 RecA protein signature 166 195 2.0E-85 T 21-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RAF_RS06005 4af3ee1fa21c260be1898841ef32718d 343 ProSitePatterns PS00321 recA signature. 214 222 - T 21-04-2016 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 RAF_RS06005 4af3ee1fa21c260be1898841ef32718d 343 Pfam PF00154 recA bacterial DNA recombination protein 8 269 4.2E-145 T 21-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RAF_RS06005 4af3ee1fa21c260be1898841ef32718d 343 PANTHER PTHR22942:SF1 6 336 2.9E-200 T 21-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RAF_RS06005 4af3ee1fa21c260be1898841ef32718d 343 SUPERFAMILY SSF54752 269 326 2.49E-22 T 21-04-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal RAF_RS06005 4af3ee1fa21c260be1898841ef32718d 343 SUPERFAMILY SSF52540 6 268 3.97E-66 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01730 7937dc5379232eb5e54db130eac736d4 295 SUPERFAMILY SSF56194 189 293 7.59E-35 T 21-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RAF_RS01730 7937dc5379232eb5e54db130eac736d4 295 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 195 290 2.7E-25 T 21-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RAF_RS01730 7937dc5379232eb5e54db130eac736d4 295 PANTHER PTHR21071:SF4 2 294 1.0E-102 T 21-04-2016 RAF_RS01730 7937dc5379232eb5e54db130eac736d4 295 SUPERFAMILY SSF56176 15 202 9.45E-44 T 21-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RAF_RS01730 7937dc5379232eb5e54db130eac736d4 295 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 18 292 1.2E-61 T 21-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RAF_RS01730 7937dc5379232eb5e54db130eac736d4 295 PANTHER PTHR21071 2 294 1.0E-102 T 21-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RAF_RS01730 7937dc5379232eb5e54db130eac736d4 295 Gene3D G3DSA:3.30.465.10 82 219 5.2E-38 T 21-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RAF_RS01730 7937dc5379232eb5e54db130eac736d4 295 Gene3D G3DSA:3.30.43.10 8 79 3.6E-18 T 21-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 RAF_RS01730 7937dc5379232eb5e54db130eac736d4 295 Pfam PF01565 FAD binding domain 32 158 1.6E-17 T 21-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RAF_RS01730 7937dc5379232eb5e54db130eac736d4 295 Gene3D G3DSA:3.90.78.10 220 293 1.3E-28 T 21-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RAF_RS01730 7937dc5379232eb5e54db130eac736d4 295 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 295 85.899 T 21-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RAF_RS00435 bb0a1a137be88540e026f52b3390b2b7 431 Pfam PF07690 Major Facilitator Superfamily 30 351 1.2E-47 T 21-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAF_RS00435 bb0a1a137be88540e026f52b3390b2b7 431 SUPERFAMILY SSF103473 1 428 1.09E-82 T 21-04-2016 IPR020846 Major facilitator superfamily domain RAF_RS00435 bb0a1a137be88540e026f52b3390b2b7 431 Gene3D G3DSA:1.20.1250.20 236 426 4.1E-42 T 21-04-2016 RAF_RS00435 bb0a1a137be88540e026f52b3390b2b7 431 Gene3D G3DSA:1.20.1250.20 21 216 8.7E-48 T 21-04-2016 RAF_RS00435 bb0a1a137be88540e026f52b3390b2b7 431 PANTHER PTHR11662:SF141 16 429 6.5E-121 T 21-04-2016 RAF_RS00435 bb0a1a137be88540e026f52b3390b2b7 431 PANTHER PTHR11662 16 429 6.5E-121 T 21-04-2016 RAF_RS00435 bb0a1a137be88540e026f52b3390b2b7 431 PIRSF PIRSF002808 1 430 4.8E-148 T 21-04-2016 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 RAF_RS06025 3baac0d60cfb90ce049ae8b5e9d6f539 593 SMART SM00382 29 195 2.8E-10 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS06025 3baac0d60cfb90ce049ae8b5e9d6f539 593 SMART SM00382 312 484 4.8E-12 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS06025 3baac0d60cfb90ce049ae8b5e9d6f539 593 SUPERFAMILY SSF52540 4 210 1.56E-44 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06025 3baac0d60cfb90ce049ae8b5e9d6f539 593 Pfam PF16326 ABC transporter C-terminal domain 524 592 1.2E-12 T 21-04-2016 IPR032524 ABC transporter Uup, C-terminal GO:0003677 RAF_RS06025 3baac0d60cfb90ce049ae8b5e9d6f539 593 Pfam PF00005 ABC transporter 304 439 6.4E-23 T 21-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAF_RS06025 3baac0d60cfb90ce049ae8b5e9d6f539 593 Pfam PF00005 ABC transporter 20 149 5.7E-23 T 21-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAF_RS06025 3baac0d60cfb90ce049ae8b5e9d6f539 593 PANTHER PTHR19211 11 536 1.3E-145 T 21-04-2016 RAF_RS06025 3baac0d60cfb90ce049ae8b5e9d6f539 593 SUPERFAMILY SSF52540 276 497 1.57E-49 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06025 3baac0d60cfb90ce049ae8b5e9d6f539 593 Gene3D G3DSA:3.40.50.300 7 206 5.3E-44 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06025 3baac0d60cfb90ce049ae8b5e9d6f539 593 Gene3D G3DSA:3.40.50.300 286 497 3.8E-47 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06025 3baac0d60cfb90ce049ae8b5e9d6f539 593 ProSitePatterns PS00211 ABC transporters family signature. 121 135 - T 21-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAF_RS06025 3baac0d60cfb90ce049ae8b5e9d6f539 593 ProSitePatterns PS00211 ABC transporters family signature. 411 425 - T 21-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAF_RS02335 e1e1c8a14ca5c0ffbed7f637ae49216b 154 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 21 149 6.6E-27 T 21-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 RAF_RS02335 e1e1c8a14ca5c0ffbed7f637ae49216b 154 SUPERFAMILY SSF53098 19 152 1.26E-35 T 21-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RAF_RS02335 e1e1c8a14ca5c0ffbed7f637ae49216b 154 PANTHER PTHR33317 19 154 6.5E-34 T 21-04-2016 RAF_RS02335 e1e1c8a14ca5c0ffbed7f637ae49216b 154 Pfam PF03652 Holliday junction resolvase 19 150 1.8E-38 T 21-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 RAF_RS02335 e1e1c8a14ca5c0ffbed7f637ae49216b 154 Gene3D G3DSA:3.30.420.140 19 152 5.7E-41 T 21-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 RAF_RS02335 e1e1c8a14ca5c0ffbed7f637ae49216b 154 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 17 152 22.819 T 21-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 RAF_RS02335 e1e1c8a14ca5c0ffbed7f637ae49216b 154 PANTHER PTHR33317:SF1 19 154 6.5E-34 T 21-04-2016 RAF_RS02335 e1e1c8a14ca5c0ffbed7f637ae49216b 154 SMART SM00732 17 117 2.4E-27 T 21-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 RAF_RS00930 18184bed71675e528ee7cdbe45026497 169 Pfam PF00466 Ribosomal protein L10 3 98 3.7E-24 T 21-04-2016 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 RAF_RS00930 18184bed71675e528ee7cdbe45026497 169 PANTHER PTHR11560 3 168 5.4E-53 T 21-04-2016 RAF_RS00930 18184bed71675e528ee7cdbe45026497 169 SUPERFAMILY SSF160369 3 168 5.62E-52 T 21-04-2016 RAF_RS00930 18184bed71675e528ee7cdbe45026497 169 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 1 158 25.578 T 21-04-2016 IPR022973 Ribosomal protein L10 RAF_RS00930 18184bed71675e528ee7cdbe45026497 169 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 15 154 3.0E-9 T 21-04-2016 RAF_RS00930 18184bed71675e528ee7cdbe45026497 169 ProSitePatterns PS01109 Ribosomal protein L10 signature. 6 40 - T 21-04-2016 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS06770 ff62b1b60e1d5c7a68f6804ebe7f96e8 595 SMART SM00493 250 321 3.8E-14 T 21-04-2016 IPR006171 Toprim domain RAF_RS06770 ff62b1b60e1d5c7a68f6804ebe7f96e8 595 SUPERFAMILY SSF57783 1 97 3.91E-29 T 21-04-2016 RAF_RS06770 ff62b1b60e1d5c7a68f6804ebe7f96e8 595 SUPERFAMILY SSF56731 112 410 4.01E-96 T 21-04-2016 RAF_RS06770 ff62b1b60e1d5c7a68f6804ebe7f96e8 595 Pfam PF13662 Toprim domain 253 318 7.5E-16 T 21-04-2016 IPR006171 Toprim domain RAF_RS06770 ff62b1b60e1d5c7a68f6804ebe7f96e8 595 Gene3D G3DSA:3.40.1360.10 232 356 2.5E-41 T 21-04-2016 RAF_RS06770 ff62b1b60e1d5c7a68f6804ebe7f96e8 595 Gene3D G3DSA:3.90.980.10 112 231 9.6E-36 T 21-04-2016 IPR013264 DNA primase, catalytic core, N-terminal RAF_RS06770 ff62b1b60e1d5c7a68f6804ebe7f96e8 595 Gene3D G3DSA:3.90.580.10 2 97 2.5E-31 T 21-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 RAF_RS06770 ff62b1b60e1d5c7a68f6804ebe7f96e8 595 PANTHER PTHR30313 1 591 1.1E-111 T 21-04-2016 RAF_RS06770 ff62b1b60e1d5c7a68f6804ebe7f96e8 595 PIRSF PIRSF002811 1 586 8.0E-169 T 21-04-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 RAF_RS06770 ff62b1b60e1d5c7a68f6804ebe7f96e8 595 Pfam PF01807 CHC2 zinc finger 5 97 8.3E-35 T 21-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 RAF_RS06770 ff62b1b60e1d5c7a68f6804ebe7f96e8 595 Pfam PF08275 DNA primase catalytic core, N-terminal domain 125 242 2.7E-36 T 21-04-2016 IPR013264 DNA primase, catalytic core, N-terminal RAF_RS06770 ff62b1b60e1d5c7a68f6804ebe7f96e8 595 Hamap MF_00974 DNA primase [dnaG]. 2 570 26.017 T 21-04-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 RAF_RS06770 ff62b1b60e1d5c7a68f6804ebe7f96e8 595 TIGRFAM TIGR01391 dnaG: DNA primase 3 409 5.4E-141 T 21-04-2016 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 RAF_RS06770 ff62b1b60e1d5c7a68f6804ebe7f96e8 595 SMART SM00400 34 88 1.7E-34 T 21-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 RAF_RS02210 cef0cd222f994629bee406211cb3f1e8 338 SMART SM00859 6 121 6.3E-34 T 21-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RAF_RS02210 cef0cd222f994629bee406211cb3f1e8 338 PANTHER PTHR10174:SF2 67 338 4.6E-60 T 21-04-2016 RAF_RS02210 cef0cd222f994629bee406211cb3f1e8 338 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 6 120 4.1E-30 T 21-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RAF_RS02210 cef0cd222f994629bee406211cb3f1e8 338 SUPERFAMILY SSF55347 131 321 1.68E-63 T 21-04-2016 RAF_RS02210 cef0cd222f994629bee406211cb3f1e8 338 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 6 336 2.7E-155 T 21-04-2016 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RAF_RS02210 cef0cd222f994629bee406211cb3f1e8 338 Gene3D G3DSA:3.40.50.720 1 144 6.6E-55 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS02210 cef0cd222f994629bee406211cb3f1e8 338 PANTHER PTHR10174 67 338 4.6E-60 T 21-04-2016 RAF_RS02210 cef0cd222f994629bee406211cb3f1e8 338 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 4 334 33.841 T 21-04-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RAF_RS02210 cef0cd222f994629bee406211cb3f1e8 338 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 141 320 4.9E-43 T 21-04-2016 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RAF_RS02210 cef0cd222f994629bee406211cb3f1e8 338 PIRSF PIRSF000148 4 338 6.7E-118 T 21-04-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RAF_RS02210 cef0cd222f994629bee406211cb3f1e8 338 SUPERFAMILY SSF51735 5 159 4.32E-47 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS02210 cef0cd222f994629bee406211cb3f1e8 338 Gene3D G3DSA:3.30.360.10 145 316 1.3E-66 T 21-04-2016 RAF_RS01260 593525fc77f437adb34f4949132305d2 179 PANTHER PTHR11237 10 179 1.3E-71 T 21-04-2016 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 UniPathway: UPA00232 RAF_RS01260 593525fc77f437adb34f4949132305d2 179 SUPERFAMILY SSF47240 4 89 1.69E-13 T 21-04-2016 IPR009078 Ferritin-like superfamily RAF_RS01260 593525fc77f437adb34f4949132305d2 179 Gene3D G3DSA:1.20.1260.10 9 135 1.1E-4 T 21-04-2016 IPR012347 Ferritin-related RAF_RS01260 593525fc77f437adb34f4949132305d2 179 Pfam PF03232 Ubiquinone biosynthesis protein COQ7 13 179 1.0E-55 T 21-04-2016 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 UniPathway: UPA00232 RAF_RS02100 32770da5a1f823a3021f07e9ab24209a 212 Pfam PF01551 Peptidase family M23 118 206 1.7E-16 T 21-04-2016 IPR016047 Peptidase M23 RAF_RS02100 32770da5a1f823a3021f07e9ab24209a 212 PANTHER PTHR21666 84 210 9.7E-13 T 21-04-2016 RAF_RS02100 32770da5a1f823a3021f07e9ab24209a 212 SUPERFAMILY SSF51261 25 210 1.67E-28 T 21-04-2016 IPR011055 Duplicated hybrid motif RAF_RS02100 32770da5a1f823a3021f07e9ab24209a 212 Gene3D G3DSA:2.70.70.10 87 211 9.5E-24 T 21-04-2016 RAF_RS06915 e49db352bd34cc24153a8be3315d1bb5 209 PANTHER PTHR10993 20 208 3.1E-66 T 21-04-2016 RAF_RS06915 e49db352bd34cc24153a8be3315d1bb5 209 Pfam PF03099 Biotin/lipoate A/B protein ligase family 56 164 4.3E-8 T 21-04-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 RAF_RS06915 e49db352bd34cc24153a8be3315d1bb5 209 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 69 84 - T 21-04-2016 IPR020605 Octanoyltransferase, conserved site GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RAF_RS06915 e49db352bd34cc24153a8be3315d1bb5 209 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 74 128 7.0E-26 T 21-04-2016 RAF_RS06915 e49db352bd34cc24153a8be3315d1bb5 209 PIRSF PIRSF016262 1 209 9.0E-60 T 21-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RAF_RS06915 e49db352bd34cc24153a8be3315d1bb5 209 SUPERFAMILY SSF55681 5 208 1.91E-59 T 21-04-2016 RAF_RS06915 e49db352bd34cc24153a8be3315d1bb5 209 Gene3D G3DSA:3.90.1550.10 5 208 3.0E-64 T 21-04-2016 RAF_RS06915 e49db352bd34cc24153a8be3315d1bb5 209 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 35 190 2.3E-45 T 21-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RAF_RS06915 e49db352bd34cc24153a8be3315d1bb5 209 Hamap MF_00013 Octanoyltransferase [lipB]. 2 209 33.65 T 21-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RAF_RS06250 e1fa4c0ef71ccae156b29f029681d5b7 112 PANTHER PTHR13822 1 111 2.3E-15 T 21-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RAF_RS06250 e1fa4c0ef71ccae156b29f029681d5b7 112 SUPERFAMILY SSF51344 4 87 5.89E-18 T 21-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 RAF_RS06250 e1fa4c0ef71ccae156b29f029681d5b7 112 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 5 111 9.8E-21 T 21-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RAF_RS06250 e1fa4c0ef71ccae156b29f029681d5b7 112 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 7 86 2.0E-18 T 21-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 RAF_RS06250 e1fa4c0ef71ccae156b29f029681d5b7 112 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 3 110 13.436 T 21-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 RAF_RS06250 e1fa4c0ef71ccae156b29f029681d5b7 112 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 20 92 1.0E-35 T 21-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 RAF_RS06250 e1fa4c0ef71ccae156b29f029681d5b7 112 Gene3D G3DSA:2.60.15.10 1 91 2.5E-21 T 21-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 RAF_RS00870 160abc743f0ca498166668b6919343b5 124 PIRSF PIRSF000178 1 124 2.7E-43 T 21-04-2016 RAF_RS00870 160abc743f0ca498166668b6919343b5 124 Gene3D G3DSA:1.20.1300.10 9 124 6.1E-39 T 21-04-2016 RAF_RS00870 160abc743f0ca498166668b6919343b5 124 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 10 122 1.6E-26 T 21-04-2016 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit GO:0016627 UniPathway: UPA00223 RAF_RS00870 160abc743f0ca498166668b6919343b5 124 SUPERFAMILY SSF81343 6 124 5.45E-32 T 21-04-2016 RAF_RS00870 160abc743f0ca498166668b6919343b5 124 PANTHER PTHR10978 11 124 3.2E-40 T 21-04-2016 RAF_RS00870 160abc743f0ca498166668b6919343b5 124 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 10 124 1.7E-35 T 21-04-2016 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 UniPathway: UPA00223 RAF_RS00870 160abc743f0ca498166668b6919343b5 124 ProSitePatterns PS01001 Succinate dehydrogenase cytochrome b subunit signature 2. 83 96 - T 21-04-2016 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 UniPathway: UPA00223 RAF_RS00315 a483b0c9d5dea3a6dcbcbb3b9d203387 344 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 2 339 61.355 T 21-04-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RAF_RS00315 a483b0c9d5dea3a6dcbcbb3b9d203387 344 ProSitePatterns PS01016 Glycoprotease family signature. 97 117 - T 21-04-2016 IPR017860 Peptidase M22, conserved site KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RAF_RS00315 a483b0c9d5dea3a6dcbcbb3b9d203387 344 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 271 280 2.92E-44 T 21-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RAF_RS00315 a483b0c9d5dea3a6dcbcbb3b9d203387 344 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 154 175 2.92E-44 T 21-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RAF_RS00315 a483b0c9d5dea3a6dcbcbb3b9d203387 344 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 5 18 2.92E-44 T 21-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RAF_RS00315 a483b0c9d5dea3a6dcbcbb3b9d203387 344 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 77 97 2.92E-44 T 21-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RAF_RS00315 a483b0c9d5dea3a6dcbcbb3b9d203387 344 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 98 117 2.92E-44 T 21-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RAF_RS00315 a483b0c9d5dea3a6dcbcbb3b9d203387 344 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 131 143 2.92E-44 T 21-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RAF_RS00315 a483b0c9d5dea3a6dcbcbb3b9d203387 344 PANTHER PTHR11735 1 342 2.5E-144 T 21-04-2016 RAF_RS00315 a483b0c9d5dea3a6dcbcbb3b9d203387 344 Gene3D G3DSA:3.30.420.40 3 159 1.5E-40 T 21-04-2016 RAF_RS00315 a483b0c9d5dea3a6dcbcbb3b9d203387 344 PANTHER PTHR11735:SF6 1 342 2.5E-144 T 21-04-2016 RAF_RS00315 a483b0c9d5dea3a6dcbcbb3b9d203387 344 SUPERFAMILY SSF53067 102 317 7.78E-45 T 21-04-2016 RAF_RS00315 a483b0c9d5dea3a6dcbcbb3b9d203387 344 SUPERFAMILY SSF53067 3 124 4.54E-28 T 21-04-2016 RAF_RS00315 a483b0c9d5dea3a6dcbcbb3b9d203387 344 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 4 321 3.7E-123 T 21-04-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RAF_RS00315 a483b0c9d5dea3a6dcbcbb3b9d203387 344 Pfam PF00814 Glycoprotease family 24 315 2.0E-94 T 21-04-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RAF_RS00315 a483b0c9d5dea3a6dcbcbb3b9d203387 344 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 5 314 1.8E-100 T 21-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RAF_RS01280 3e5355e1045f72e6510636806173e582 274 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 134 168 1.8E-5 T 21-04-2016 IPR001451 Hexapeptide repeat RAF_RS01280 3e5355e1045f72e6510636806173e582 274 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 4 68 3.6E-20 T 21-04-2016 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 RAF_RS01280 3e5355e1045f72e6510636806173e582 274 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 1 274 52.661 T 21-04-2016 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 RAF_RS01280 3e5355e1045f72e6510636806173e582 274 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 177 211 9.3E-13 T 21-04-2016 IPR001451 Hexapeptide repeat RAF_RS01280 3e5355e1045f72e6510636806173e582 274 PANTHER PTHR19136:SF52 17 274 6.1E-110 T 21-04-2016 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 RAF_RS01280 3e5355e1045f72e6510636806173e582 274 SUPERFAMILY SSF51161 32 259 3.74E-65 T 21-04-2016 IPR011004 Trimeric LpxA-like RAF_RS01280 3e5355e1045f72e6510636806173e582 274 Gene3D G3DSA:1.10.166.10 1 68 7.1E-22 T 21-04-2016 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 RAF_RS01280 3e5355e1045f72e6510636806173e582 274 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 4 274 2.5E-152 T 21-04-2016 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 RAF_RS01280 3e5355e1045f72e6510636806173e582 274 Gene3D G3DSA:2.160.10.10 93 257 2.7E-54 T 21-04-2016 RAF_RS01280 3e5355e1045f72e6510636806173e582 274 PANTHER PTHR19136 17 274 6.1E-110 T 21-04-2016 RAF_RS03545 ded875f3c090b6e7bbf6850c5522fc4a 440 Pfam PF13847 Methyltransferase domain 71 189 4.3E-17 T 21-04-2016 IPR025714 Methyltransferase domain RAF_RS03545 ded875f3c090b6e7bbf6850c5522fc4a 440 SUPERFAMILY SSF53335 20 273 1.39E-27 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS03545 ded875f3c090b6e7bbf6850c5522fc4a 440 Gene3D G3DSA:3.40.50.150 62 188 4.4E-27 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS03545 ded875f3c090b6e7bbf6850c5522fc4a 440 Gene3D G3DSA:3.40.50.150 237 278 4.4E-27 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS03545 ded875f3c090b6e7bbf6850c5522fc4a 440 PANTHER PTHR10108 402 413 6.8E-15 T 21-04-2016 RAF_RS03545 ded875f3c090b6e7bbf6850c5522fc4a 440 PANTHER PTHR10108 72 179 6.8E-15 T 21-04-2016 RAF_RS04090 a48f524e1bee26621787d5bd02a614d7 648 Gene3D G3DSA:3.40.50.300 122 300 2.7E-35 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04090 a48f524e1bee26621787d5bd02a614d7 648 SMART SM00490 415 512 1.0E-6 T 21-04-2016 IPR001650 Helicase, C-terminal RAF_RS04090 a48f524e1bee26621787d5bd02a614d7 648 TIGRFAM TIGR00595 priA: primosomal protein N' 141 644 2.4E-177 T 21-04-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 RAF_RS04090 a48f524e1bee26621787d5bd02a614d7 648 Gene3D G3DSA:3.40.50.300 381 556 2.4E-26 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04090 a48f524e1bee26621787d5bd02a614d7 648 SMART SM00487 118 312 3.2E-24 T 21-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RAF_RS04090 a48f524e1bee26621787d5bd02a614d7 648 SUPERFAMILY SSF52540 65 297 5.14E-38 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04090 a48f524e1bee26621787d5bd02a614d7 648 PANTHER PTHR30580 1 648 1.6E-189 T 21-04-2016 RAF_RS04090 a48f524e1bee26621787d5bd02a614d7 648 Pfam PF00271 Helicase conserved C-terminal domain 405 511 9.6E-6 T 21-04-2016 IPR001650 Helicase, C-terminal RAF_RS04090 a48f524e1bee26621787d5bd02a614d7 648 Pfam PF00270 DEAD/DEAH box helicase 126 285 1.7E-15 T 21-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RAF_RS04090 a48f524e1bee26621787d5bd02a614d7 648 Hamap MF_00983 Probable primosomal protein N' [priA]. 6 647 24.17 T 21-04-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 RAF_RS04090 a48f524e1bee26621787d5bd02a614d7 648 SUPERFAMILY SSF52540 429 534 1.54E-27 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04090 a48f524e1bee26621787d5bd02a614d7 648 SUPERFAMILY SSF52540 137 188 1.54E-27 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01200 ad809438a5d24daabc76b69a00c15c77 928 Pfam PF00676 Dehydrogenase E1 component 204 520 8.4E-53 T 21-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 RAF_RS01200 ad809438a5d24daabc76b69a00c15c77 928 PIRSF PIRSF000157 1 928 0.0 T 21-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RAF_RS01200 ad809438a5d24daabc76b69a00c15c77 928 Gene3D G3DSA:3.40.50.970 583 781 1.1E-22 T 21-04-2016 IPR029061 Thiamin diphosphate-binding fold RAF_RS01200 ad809438a5d24daabc76b69a00c15c77 928 SUPERFAMILY SSF52518 121 519 2.75E-73 T 21-04-2016 IPR029061 Thiamin diphosphate-binding fold RAF_RS01200 ad809438a5d24daabc76b69a00c15c77 928 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 783 926 2.5E-49 T 21-04-2016 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RAF_RS01200 ad809438a5d24daabc76b69a00c15c77 928 SUPERFAMILY SSF52518 570 785 4.12E-49 T 21-04-2016 IPR029061 Thiamin diphosphate-binding fold RAF_RS01200 ad809438a5d24daabc76b69a00c15c77 928 SMART SM00861 585 778 4.8E-58 T 21-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RAF_RS01200 ad809438a5d24daabc76b69a00c15c77 928 Gene3D G3DSA:3.40.50.970 155 519 1.8E-66 T 21-04-2016 IPR029061 Thiamin diphosphate-binding fold RAF_RS01200 ad809438a5d24daabc76b69a00c15c77 928 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 9 47 2.5E-15 T 21-04-2016 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RAF_RS01200 ad809438a5d24daabc76b69a00c15c77 928 Pfam PF02779 Transketolase, pyrimidine binding domain 584 779 1.9E-64 T 21-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RAF_RS01200 ad809438a5d24daabc76b69a00c15c77 928 PANTHER PTHR23152 10 928 0.0 T 21-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RAF_RS01200 ad809438a5d24daabc76b69a00c15c77 928 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 11 925 0.0 T 21-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RAF_RS06650 e056271659bdae26a1a0072bac3d09ec 445 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 157 232 2.9E-10 T 21-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 RAF_RS06650 e056271659bdae26a1a0072bac3d09ec 445 TIGRFAM TIGR00115 tig: trigger factor 15 414 1.1E-118 T 21-04-2016 IPR005215 Trigger factor GO:0015031 RAF_RS06650 e056271659bdae26a1a0072bac3d09ec 445 Hamap MF_00303 Trigger factor [tig]. 1 422 19.872 T 21-04-2016 IPR005215 Trigger factor GO:0015031 RAF_RS06650 e056271659bdae26a1a0072bac3d09ec 445 SUPERFAMILY SSF102735 1 130 1.83E-31 T 21-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 RAF_RS06650 e056271659bdae26a1a0072bac3d09ec 445 PIRSF PIRSF003095 1 438 6.9E-113 T 21-04-2016 IPR005215 Trigger factor GO:0015031 RAF_RS06650 e056271659bdae26a1a0072bac3d09ec 445 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 261 415 6.4E-34 T 21-04-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 RAF_RS06650 e056271659bdae26a1a0072bac3d09ec 445 Gene3D G3DSA:3.10.50.40 151 215 3.3E-7 T 21-04-2016 RAF_RS06650 e056271659bdae26a1a0072bac3d09ec 445 Gene3D G3DSA:1.10.3120.10 216 391 3.8E-43 T 21-04-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 RAF_RS06650 e056271659bdae26a1a0072bac3d09ec 445 PANTHER PTHR30560 1 434 3.1E-83 T 21-04-2016 RAF_RS06650 e056271659bdae26a1a0072bac3d09ec 445 SUPERFAMILY SSF54534 89 242 1.1E-27 T 21-04-2016 RAF_RS06650 e056271659bdae26a1a0072bac3d09ec 445 Gene3D G3DSA:3.30.70.1050 1 118 1.4E-31 T 21-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 RAF_RS06650 e056271659bdae26a1a0072bac3d09ec 445 Pfam PF05697 Bacterial trigger factor protein (TF) 1 144 1.2E-34 T 21-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 RAF_RS06650 e056271659bdae26a1a0072bac3d09ec 445 SUPERFAMILY SSF109998 249 434 7.06E-34 T 21-04-2016 IPR027304 Trigger factor/SurA domain RAF_RS05120 b8f5c763aeff03c4cc74e1ddd3beb489 273 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 21-04-2016 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 RAF_RS05120 b8f5c763aeff03c4cc74e1ddd3beb489 273 SUPERFAMILY SSF50104 126 272 2.23E-61 T 21-04-2016 IPR008991 Translation protein SH3-like domain RAF_RS05120 b8f5c763aeff03c4cc74e1ddd3beb489 273 Gene3D G3DSA:2.40.50.140 1 114 8.9E-53 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS05120 b8f5c763aeff03c4cc74e1ddd3beb489 273 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 250 1.2E-56 T 21-04-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 RAF_RS05120 b8f5c763aeff03c4cc74e1ddd3beb489 273 SUPERFAMILY SSF50249 2 125 9.94E-50 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS05120 b8f5c763aeff03c4cc74e1ddd3beb489 273 PANTHER PTHR13691 1 273 6.8E-144 T 21-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05120 b8f5c763aeff03c4cc74e1ddd3beb489 273 PIRSF PIRSF002158 4 273 3.6E-105 T 21-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05120 b8f5c763aeff03c4cc74e1ddd3beb489 273 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 273 1.2E-131 T 21-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 RAF_RS05120 b8f5c763aeff03c4cc74e1ddd3beb489 273 SMART SM01383 42 118 5.7E-48 T 21-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05120 b8f5c763aeff03c4cc74e1ddd3beb489 273 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 118 1.0E-34 T 21-04-2016 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05120 b8f5c763aeff03c4cc74e1ddd3beb489 273 SMART SM01382 124 252 4.4E-90 T 21-04-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 RAF_RS05120 b8f5c763aeff03c4cc74e1ddd3beb489 273 Gene3D G3DSA:2.30.30.30 120 194 1.1E-30 T 21-04-2016 IPR014722 Ribosomal protein L2 domain 2 RAF_RS05120 b8f5c763aeff03c4cc74e1ddd3beb489 273 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 273 46.834 T 21-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 RAF_RS05120 b8f5c763aeff03c4cc74e1ddd3beb489 273 Gene3D G3DSA:4.10.950.10 196 272 9.3E-36 T 21-04-2016 IPR014726 Ribosomal protein L2, domain 3 RAF_RS01735 75d6e70340d2466a02b2befe11d60a55 321 Gene3D G3DSA:3.30.1490.20 117 190 9.0E-10 T 21-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RAF_RS01735 75d6e70340d2466a02b2befe11d60a55 321 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 24 317 2.3E-95 T 21-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RAF_RS01735 75d6e70340d2466a02b2befe11d60a55 321 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 23 318 32.472 T 21-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RAF_RS01735 75d6e70340d2466a02b2befe11d60a55 321 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 259 288 - T 21-04-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RAF_RS01735 75d6e70340d2466a02b2befe11d60a55 321 PANTHER PTHR23132:SF0 25 318 1.0E-64 T 21-04-2016 RAF_RS01735 75d6e70340d2466a02b2befe11d60a55 321 Pfam PF01820 D-ala D-ala ligase N-terminus 25 104 1.0E-18 T 21-04-2016 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RAF_RS01735 75d6e70340d2466a02b2befe11d60a55 321 Pfam PF07478 D-ala D-ala ligase C-terminus 147 315 3.6E-41 T 21-04-2016 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RAF_RS01735 75d6e70340d2466a02b2befe11d60a55 321 PANTHER PTHR23132 25 318 1.0E-64 T 21-04-2016 RAF_RS01735 75d6e70340d2466a02b2befe11d60a55 321 SUPERFAMILY SSF56059 116 315 6.48E-41 T 21-04-2016 RAF_RS01735 75d6e70340d2466a02b2befe11d60a55 321 SUPERFAMILY SSF52440 22 116 2.69E-29 T 21-04-2016 IPR016185 Pre-ATP-grasp domain RAF_RS01735 75d6e70340d2466a02b2befe11d60a55 321 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 83 94 - T 21-04-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RAF_RS01735 75d6e70340d2466a02b2befe11d60a55 321 Gene3D G3DSA:3.40.50.20 22 104 1.1E-25 T 21-04-2016 IPR016185 Pre-ATP-grasp domain RAF_RS01735 75d6e70340d2466a02b2befe11d60a55 321 Gene3D G3DSA:3.30.470.20 191 317 1.4E-38 T 21-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RAF_RS01735 75d6e70340d2466a02b2befe11d60a55 321 Gene3D G3DSA:3.30.470.20 106 116 1.4E-38 T 21-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RAF_RS01825 c9e762aef36da0bfb49c2c1ad520a3c3 184 PANTHER PTHR35089 30 180 5.8E-16 T 21-04-2016 RAF_RS01825 c9e762aef36da0bfb49c2c1ad520a3c3 184 Pfam PF03938 Outer membrane protein (OmpH-like) 19 170 1.8E-21 T 21-04-2016 IPR005632 Chaperone protein Skp GO:0051082 RAF_RS01825 c9e762aef36da0bfb49c2c1ad520a3c3 184 Gene3D G3DSA:3.30.910.20 33 170 7.3E-11 T 21-04-2016 RAF_RS01825 c9e762aef36da0bfb49c2c1ad520a3c3 184 SMART SM00935 11 174 5.9E-30 T 21-04-2016 IPR005632 Chaperone protein Skp GO:0051082 RAF_RS01825 c9e762aef36da0bfb49c2c1ad520a3c3 184 SUPERFAMILY SSF111384 33 174 1.1E-25 T 21-04-2016 IPR024930 Skp domain RAF_RS04200 f9e2843ff4d575eb647be0612aac14e6 411 SUPERFAMILY SSF52374 2 322 1.61E-94 T 21-04-2016 RAF_RS04200 f9e2843ff4d575eb647be0612aac14e6 411 PANTHER PTHR11766 1 410 5.3E-175 T 21-04-2016 IPR024088 Tyrosine-tRNA ligase, bacterial-type GO:0004831 KEGG: 00970+6.1.1.1 RAF_RS04200 f9e2843ff4d575eb647be0612aac14e6 411 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 163 178 1.09E-26 T 21-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 RAF_RS04200 f9e2843ff4d575eb647be0612aac14e6 411 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 184 206 1.09E-26 T 21-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 RAF_RS04200 f9e2843ff4d575eb647be0612aac14e6 411 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 43 65 1.09E-26 T 21-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 RAF_RS04200 f9e2843ff4d575eb647be0612aac14e6 411 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 217 229 1.09E-26 T 21-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 RAF_RS04200 f9e2843ff4d575eb647be0612aac14e6 411 Gene3D G3DSA:3.40.50.620 3 233 2.1E-96 T 21-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS04200 f9e2843ff4d575eb647be0612aac14e6 411 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 6 410 4.3E-116 T 21-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 RAF_RS04200 f9e2843ff4d575eb647be0612aac14e6 411 SUPERFAMILY SSF55174 304 410 1.13E-15 T 21-04-2016 RAF_RS04200 f9e2843ff4d575eb647be0612aac14e6 411 Pfam PF00579 tRNA synthetases class I (W and Y) 27 322 4.5E-74 T 21-04-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS04200 f9e2843ff4d575eb647be0612aac14e6 411 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 1 411 42.516 T 21-04-2016 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 RAF_RS04200 f9e2843ff4d575eb647be0612aac14e6 411 Gene3D G3DSA:1.10.240.10 234 315 5.0E-31 T 21-04-2016 RAF_RS04200 f9e2843ff4d575eb647be0612aac14e6 411 Gene3D G3DSA:3.10.290.10 316 411 1.4E-24 T 21-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RAF_RS00110 9fbf680fd080e4f09513d257baeff127 1855 SUPERFAMILY SSF103515 1542 1853 4.84E-33 T 21-04-2016 IPR005546 Autotransporter beta-domain RAF_RS00110 9fbf680fd080e4f09513d257baeff127 1855 ProDom PD214418 ANTIGEN SURFACE CELL PRECURSOR SCA1 SIGNAL RP016 1 308 4.0E-143 T 21-04-2016 IPR020179 Antigen surface cell precursor, Sca1 RAF_RS00110 9fbf680fd080e4f09513d257baeff127 1855 Pfam PF03797 Autotransporter beta-domain 1575 1840 4.1E-42 T 21-04-2016 IPR005546 Autotransporter beta-domain RAF_RS00110 9fbf680fd080e4f09513d257baeff127 1855 Gene3D G3DSA:2.40.128.130 1522 1853 6.6E-27 T 21-04-2016 IPR005546 Autotransporter beta-domain RAF_RS00110 9fbf680fd080e4f09513d257baeff127 1855 SMART SM00869 1575 1845 2.0E-25 T 21-04-2016 IPR005546 Autotransporter beta-domain RAF_RS00935 760c0b37b6301a075eaca00877542094 125 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 125 1.1E-47 T 21-04-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00935 760c0b37b6301a075eaca00877542094 125 Gene3D G3DSA:1.20.5.710 7 52 3.1E-16 T 21-04-2016 RAF_RS00935 760c0b37b6301a075eaca00877542094 125 SUPERFAMILY SSF48300 4 61 3.79E-15 T 21-04-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00935 760c0b37b6301a075eaca00877542094 125 SUPERFAMILY SSF54736 55 125 1.64E-23 T 21-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RAF_RS00935 760c0b37b6301a075eaca00877542094 125 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 59 125 3.6E-28 T 21-04-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 RAF_RS00935 760c0b37b6301a075eaca00877542094 125 Gene3D G3DSA:3.30.1390.10 53 125 1.4E-30 T 21-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RAF_RS00935 760c0b37b6301a075eaca00877542094 125 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 1 125 22.666 T 21-04-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00935 760c0b37b6301a075eaca00877542094 125 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 60 125 7.0E-19 T 21-04-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 RAF_RS00935 760c0b37b6301a075eaca00877542094 125 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 5 50 4.3E-17 T 21-04-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS06810 9a5e7323b001e1481da763947dba1317 231 ProSitePatterns PS00141 Eukaryotic and viral aspartyl proteases active site. 137 148 - T 21-04-2016 IPR001969 Aspartic peptidase, active site GO:0004190|GO:0006508 RAF_RS06810 9a5e7323b001e1481da763947dba1317 231 PANTHER PTHR41535:SF1 48 229 2.4E-19 T 21-04-2016 RAF_RS06810 9a5e7323b001e1481da763947dba1317 231 TIGRFAM TIGR02281 clan_AA_DTGA: clan AA aspartic protease, TIGR02281 family 114 230 8.2E-41 T 21-04-2016 IPR011969 Clan AA aspartic peptidase, C-terminal RAF_RS06810 9a5e7323b001e1481da763947dba1317 231 SUPERFAMILY SSF50630 116 219 3.08E-19 T 21-04-2016 IPR021109 Aspartic peptidase domain RAF_RS06810 9a5e7323b001e1481da763947dba1317 231 PANTHER PTHR41535 48 229 2.4E-19 T 21-04-2016 RAF_RS06810 9a5e7323b001e1481da763947dba1317 231 Pfam PF13975 gag-polyprotein putative aspartyl protease 127 216 8.9E-20 T 21-04-2016 RAF_RS06275 968650cc99e6a254e488a3b624878aa2 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 401 416 7.1E-65 T 21-04-2016 RAF_RS06275 968650cc99e6a254e488a3b624878aa2 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 37 52 7.1E-65 T 21-04-2016 RAF_RS06275 968650cc99e6a254e488a3b624878aa2 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 170 195 7.1E-65 T 21-04-2016 RAF_RS06275 968650cc99e6a254e488a3b624878aa2 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 7.1E-65 T 21-04-2016 RAF_RS06275 968650cc99e6a254e488a3b624878aa2 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 336 357 7.1E-65 T 21-04-2016 RAF_RS06275 968650cc99e6a254e488a3b624878aa2 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 300 307 7.1E-65 T 21-04-2016 RAF_RS06275 968650cc99e6a254e488a3b624878aa2 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 423 443 7.1E-65 T 21-04-2016 RAF_RS06275 968650cc99e6a254e488a3b624878aa2 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 134 143 7.1E-65 T 21-04-2016 RAF_RS06275 968650cc99e6a254e488a3b624878aa2 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 258 272 7.1E-65 T 21-04-2016 RAF_RS06275 968650cc99e6a254e488a3b624878aa2 459 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 38 48 - T 21-04-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 RAF_RS06275 968650cc99e6a254e488a3b624878aa2 459 PANTHER PTHR22912 1 452 7.8E-204 T 21-04-2016 RAF_RS06275 968650cc99e6a254e488a3b624878aa2 459 PANTHER PTHR22912:SF125 1 452 7.8E-204 T 21-04-2016 RAF_RS06275 968650cc99e6a254e488a3b624878aa2 459 PIRSF PIRSF000350 1 457 1.5E-82 T 21-04-2016 RAF_RS06275 968650cc99e6a254e488a3b624878aa2 459 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 340 448 4.1E-33 T 21-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RAF_RS06275 968650cc99e6a254e488a3b624878aa2 459 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 320 2.0E-66 T 21-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAF_RS06275 968650cc99e6a254e488a3b624878aa2 459 Gene3D G3DSA:3.30.390.30 327 458 9.7E-43 T 21-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RAF_RS06275 968650cc99e6a254e488a3b624878aa2 459 SUPERFAMILY SSF51905 1 366 4.98E-57 T 21-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAF_RS06275 968650cc99e6a254e488a3b624878aa2 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 131 149 3.9E-35 T 21-04-2016 RAF_RS06275 968650cc99e6a254e488a3b624878aa2 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 3.9E-35 T 21-04-2016 RAF_RS06275 968650cc99e6a254e488a3b624878aa2 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 285 307 3.9E-35 T 21-04-2016 RAF_RS06275 968650cc99e6a254e488a3b624878aa2 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 257 273 3.9E-35 T 21-04-2016 RAF_RS06275 968650cc99e6a254e488a3b624878aa2 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 170 188 3.9E-35 T 21-04-2016 RAF_RS06275 968650cc99e6a254e488a3b624878aa2 459 SUPERFAMILY SSF55424 336 458 1.37E-36 T 21-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 RAF_RS06275 968650cc99e6a254e488a3b624878aa2 459 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 3 459 2.2E-170 T 21-04-2016 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084 RAF_RS06275 968650cc99e6a254e488a3b624878aa2 459 Gene3D G3DSA:3.50.50.60 2 140 1.8E-43 T 21-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAF_RS06275 968650cc99e6a254e488a3b624878aa2 459 Gene3D G3DSA:3.50.50.60 141 326 6.0E-49 T 21-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAF_RS03935 5be71dcfd877718a365f5f480f54e293 173 PANTHER PTHR23407 1 172 5.3E-18 T 21-04-2016 RAF_RS03935 5be71dcfd877718a365f5f480f54e293 173 SUPERFAMILY SSF100950 1 171 8.93E-39 T 21-04-2016 RAF_RS03935 5be71dcfd877718a365f5f480f54e293 173 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 3 171 2.2E-31 T 21-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase RAF_RS03935 5be71dcfd877718a365f5f480f54e293 173 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 3 171 4.6E-31 T 21-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase RAF_RS03935 5be71dcfd877718a365f5f480f54e293 173 PIRSF PIRSF006806 1 173 3.3E-64 T 21-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase RAF_RS03935 5be71dcfd877718a365f5f480f54e293 173 Gene3D G3DSA:3.40.50.10420 1 172 2.4E-30 T 21-04-2016 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain RAF_RS03935 5be71dcfd877718a365f5f480f54e293 173 PANTHER PTHR23407:SF1 1 172 5.3E-18 T 21-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase RAF_RS00560 cba665d9fca8319164459e03d877eed3 418 SUPERFAMILY SSF103473 5 413 6.28E-63 T 21-04-2016 IPR020846 Major facilitator superfamily domain RAF_RS00560 cba665d9fca8319164459e03d877eed3 418 PANTHER PTHR23508:SF1 2 412 8.2E-129 T 21-04-2016 RAF_RS00560 cba665d9fca8319164459e03d877eed3 418 PANTHER PTHR23508 2 412 8.2E-129 T 21-04-2016 RAF_RS00560 cba665d9fca8319164459e03d877eed3 418 Pfam PF07690 Major Facilitator Superfamily 262 411 2.4E-13 T 21-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAF_RS00560 cba665d9fca8319164459e03d877eed3 418 Gene3D G3DSA:1.20.1250.20 232 412 1.5E-20 T 21-04-2016 RAF_RS00560 cba665d9fca8319164459e03d877eed3 418 Gene3D G3DSA:1.20.1250.20 7 212 7.3E-21 T 21-04-2016 RAF_RS00560 cba665d9fca8319164459e03d877eed3 418 Pfam PF00083 Sugar (and other) transporter 13 209 1.6E-20 T 21-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RAF_RS06700 04fe7bf2b7b971e6ec202ddcffdfe98c 524 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 314 520 24.934 T 21-04-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 RAF_RS06700 04fe7bf2b7b971e6ec202ddcffdfe98c 524 PANTHER PTHR18895:SF64 7 336 1.9E-87 T 21-04-2016 RAF_RS06700 04fe7bf2b7b971e6ec202ddcffdfe98c 524 SUPERFAMILY SSF53335 13 291 1.64E-54 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS06700 04fe7bf2b7b971e6ec202ddcffdfe98c 524 PANTHER PTHR18895 7 336 1.9E-87 T 21-04-2016 RAF_RS06700 04fe7bf2b7b971e6ec202ddcffdfe98c 524 Pfam PF02390 Putative methyltransferase 348 511 3.8E-50 T 21-04-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 RAF_RS06700 04fe7bf2b7b971e6ec202ddcffdfe98c 524 Gene3D G3DSA:1.10.8.10 4 88 1.0E-25 T 21-04-2016 RAF_RS06700 04fe7bf2b7b971e6ec202ddcffdfe98c 524 Gene3D G3DSA:3.40.50.150 349 489 5.3E-8 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS06700 04fe7bf2b7b971e6ec202ddcffdfe98c 524 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 27 302 8.5E-82 T 21-04-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 RAF_RS06700 04fe7bf2b7b971e6ec202ddcffdfe98c 524 Pfam PF05175 Methyltransferase small domain 140 229 2.1E-16 T 21-04-2016 IPR007848 Methyltransferase small domain GO:0008168 RAF_RS06700 04fe7bf2b7b971e6ec202ddcffdfe98c 524 SUPERFAMILY SSF53335 341 513 7.05E-21 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS06700 04fe7bf2b7b971e6ec202ddcffdfe98c 524 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 5 303 4.6E-73 T 21-04-2016 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 RAF_RS06700 04fe7bf2b7b971e6ec202ddcffdfe98c 524 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 341 515 3.3E-38 T 21-04-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 RAF_RS06700 04fe7bf2b7b971e6ec202ddcffdfe98c 524 Gene3D G3DSA:3.40.50.150 90 303 1.5E-60 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS06700 04fe7bf2b7b971e6ec202ddcffdfe98c 524 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 210 216 - T 21-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RAF_RS06700 04fe7bf2b7b971e6ec202ddcffdfe98c 524 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 5 306 39.668 T 21-04-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 RAF_RS06500 e78b4c447ac719524374e865e61f1e6d 259 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 166 184 - T 21-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 RAF_RS06500 e78b4c447ac719524374e865e61f1e6d 259 Pfam PF00557 Metallopeptidase family M24 13 241 4.6E-54 T 21-04-2016 IPR000994 Peptidase M24, structural domain RAF_RS06500 e78b4c447ac719524374e865e61f1e6d 259 SUPERFAMILY SSF55920 5 252 2.22E-89 T 21-04-2016 IPR000994 Peptidase M24, structural domain RAF_RS06500 e78b4c447ac719524374e865e61f1e6d 259 PANTHER PTHR10804:SF82 1 259 1.6E-134 T 21-04-2016 RAF_RS06500 e78b4c447ac719524374e865e61f1e6d 259 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 3 249 6.1E-94 T 21-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 RAF_RS06500 e78b4c447ac719524374e865e61f1e6d 259 Hamap MF_01974 Methionine aminopeptidase [map]. 3 250 42.403 T 21-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 RAF_RS06500 e78b4c447ac719524374e865e61f1e6d 259 PANTHER PTHR10804 1 259 1.6E-134 T 21-04-2016 RAF_RS06500 e78b4c447ac719524374e865e61f1e6d 259 Gene3D G3DSA:3.90.230.10 3 254 8.0E-95 T 21-04-2016 IPR000994 Peptidase M24, structural domain RAF_RS06500 e78b4c447ac719524374e865e61f1e6d 259 PRINTS PR00599 Methionine aminopeptidase-1 signature 160 172 1.74E-22 T 21-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase RAF_RS06500 e78b4c447ac719524374e865e61f1e6d 259 PRINTS PR00599 Methionine aminopeptidase-1 signature 68 81 1.74E-22 T 21-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase RAF_RS06500 e78b4c447ac719524374e865e61f1e6d 259 PRINTS PR00599 Methionine aminopeptidase-1 signature 90 106 1.74E-22 T 21-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase RAF_RS06500 e78b4c447ac719524374e865e61f1e6d 259 PRINTS PR00599 Methionine aminopeptidase-1 signature 191 203 1.74E-22 T 21-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase RAF_RS03460 d278e9323976761caeec34bc56b14caf 250 PANTHER PTHR12835:SF7 2 208 2.0E-53 T 21-04-2016 IPR015834 Uncharacterised conserved protein UCP016642 RAF_RS03460 d278e9323976761caeec34bc56b14caf 250 PANTHER PTHR12835 2 208 2.0E-53 T 21-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 RAF_RS03460 d278e9323976761caeec34bc56b14caf 250 Pfam PF09825 Biotin-protein ligase, N terminal 1 240 1.3E-73 T 21-04-2016 IPR019197 Biotin-protein ligase, N-terminal RAF_RS03460 d278e9323976761caeec34bc56b14caf 250 Gene3D G3DSA:3.40.50.880 42 99 3.9E-4 T 21-04-2016 IPR029062 Class I glutamine amidotransferase-like RAF_RS03460 d278e9323976761caeec34bc56b14caf 250 PIRSF PIRSF016642 1 250 1.2E-98 T 21-04-2016 IPR015834 Uncharacterised conserved protein UCP016642 RAF_RS03460 d278e9323976761caeec34bc56b14caf 250 SUPERFAMILY SSF52317 27 207 6.59E-12 T 21-04-2016 IPR029062 Class I glutamine amidotransferase-like RAF_RS04165 72ba01f24d8c3070a8c9d03fe99e2189 831 Pfam PF11987 Translation-initiation factor 2 625 721 9.8E-38 T 21-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 RAF_RS04165 72ba01f24d8c3070a8c9d03fe99e2189 831 SUPERFAMILY SSF50447 733 829 7.66E-32 T 21-04-2016 IPR009000 Translation protein, beta-barrel domain RAF_RS04165 72ba01f24d8c3070a8c9d03fe99e2189 831 ProSitePatterns PS01176 Initiation factor 2 signature. 782 804 - T 21-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 RAF_RS04165 72ba01f24d8c3070a8c9d03fe99e2189 831 Pfam PF00009 Elongation factor Tu GTP binding domain 333 491 4.4E-31 T 21-04-2016 RAF_RS04165 72ba01f24d8c3070a8c9d03fe99e2189 831 PANTHER PTHR23115 307 659 1.9E-191 T 21-04-2016 RAF_RS04165 72ba01f24d8c3070a8c9d03fe99e2189 831 PANTHER PTHR23115 684 831 1.9E-191 T 21-04-2016 RAF_RS04165 72ba01f24d8c3070a8c9d03fe99e2189 831 SUPERFAMILY SSF52540 322 500 2.44E-49 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04165 72ba01f24d8c3070a8c9d03fe99e2189 831 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 257 304 1.2E-10 T 21-04-2016 IPR006847 Translation initiation factor IF-2, N-terminal RAF_RS04165 72ba01f24d8c3070a8c9d03fe99e2189 831 Gene3D G3DSA:3.40.50.300 323 490 5.1E-45 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04165 72ba01f24d8c3070a8c9d03fe99e2189 831 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 16 829 16.5 T 21-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 RAF_RS04165 72ba01f24d8c3070a8c9d03fe99e2189 831 Gene3D G3DSA:2.40.30.10 733 829 1.3E-36 T 21-04-2016 RAF_RS04165 72ba01f24d8c3070a8c9d03fe99e2189 831 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 332 486 2.6E-30 T 21-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RAF_RS04165 72ba01f24d8c3070a8c9d03fe99e2189 831 SUPERFAMILY SSF50447 505 585 9.09E-22 T 21-04-2016 IPR009000 Translation protein, beta-barrel domain RAF_RS04165 72ba01f24d8c3070a8c9d03fe99e2189 831 SUPERFAMILY SSF52156 622 738 8.37E-38 T 21-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 RAF_RS04165 72ba01f24d8c3070a8c9d03fe99e2189 831 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 248 830 7.6E-236 T 21-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 RAF_RS04165 72ba01f24d8c3070a8c9d03fe99e2189 831 PANTHER PTHR23115:SF184 307 659 1.9E-191 T 21-04-2016 RAF_RS04165 72ba01f24d8c3070a8c9d03fe99e2189 831 PANTHER PTHR23115:SF184 684 831 1.9E-191 T 21-04-2016 RAF_RS04165 72ba01f24d8c3070a8c9d03fe99e2189 831 Gene3D G3DSA:3.40.50.10050 632 710 1.1E-24 T 21-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 RAF_RS04165 72ba01f24d8c3070a8c9d03fe99e2189 831 Gene3D G3DSA:2.40.30.10 504 594 3.2E-21 T 21-04-2016 RAF_RS06455 0b929414d19b1d7d80872f8732dcccd7 200 Gene3D G3DSA:3.30.870.10 61 195 5.6E-34 T 21-04-2016 RAF_RS06455 0b929414d19b1d7d80872f8732dcccd7 200 SUPERFAMILY SSF56024 62 197 3.14E-32 T 21-04-2016 RAF_RS06455 0b929414d19b1d7d80872f8732dcccd7 200 SMART SM00155 142 169 0.0031 T 21-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 RAF_RS06455 0b929414d19b1d7d80872f8732dcccd7 200 PANTHER PTHR21248 61 195 5.3E-36 T 21-04-2016 RAF_RS06455 0b929414d19b1d7d80872f8732dcccd7 200 Pfam PF13091 PLD-like domain 75 192 6.3E-26 T 21-04-2016 IPR025202 Phospholipase D-like domain RAF_RS04415 02a56339649d6ccb5c8e3cd8d2e1f149 168 PANTHER PTHR10815 1 164 1.3E-53 T 21-04-2016 RAF_RS04415 02a56339649d6ccb5c8e3cd8d2e1f149 168 SUPERFAMILY SSF46767 84 165 5.23E-28 T 21-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 RAF_RS04415 02a56339649d6ccb5c8e3cd8d2e1f149 168 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 86 165 3.2E-27 T 21-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 RAF_RS04415 02a56339649d6ccb5c8e3cd8d2e1f149 168 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 135 141 - T 21-04-2016 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 RAF_RS04415 02a56339649d6ccb5c8e3cd8d2e1f149 168 PANTHER PTHR10815:SF5 1 164 1.3E-53 T 21-04-2016 RAF_RS04415 02a56339649d6ccb5c8e3cd8d2e1f149 168 SUPERFAMILY SSF53155 4 89 1.69E-12 T 21-04-2016 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 RAF_RS04415 02a56339649d6ccb5c8e3cd8d2e1f149 168 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 86 164 1.5E-30 T 21-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 RAF_RS04415 02a56339649d6ccb5c8e3cd8d2e1f149 168 Gene3D G3DSA:1.10.10.10 84 166 9.6E-30 T 21-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RAF_RS06900 63ded501f8b72a039e99f87d03ab0fe5 81 Pfam PF06965 Na+/H+ antiporter 1 22 63 1.1E-8 T 21-04-2016 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 RAF_RS06900 63ded501f8b72a039e99f87d03ab0fe5 81 Gene3D G3DSA:1.20.1530.10 25 64 8.6E-9 T 21-04-2016 IPR023171 Na/H antiporter domain RAF_RS00515 e302b5e3b8cb15f70fe6ce441cdb522c 438 SUPERFAMILY SSF56935 249 438 4.88E-19 T 21-04-2016 RAF_RS00515 e302b5e3b8cb15f70fe6ce441cdb522c 438 SUPERFAMILY SSF56935 90 210 4.88E-19 T 21-04-2016 RAF_RS00515 e302b5e3b8cb15f70fe6ce441cdb522c 438 Gene3D G3DSA:2.40.160.10 34 219 8.3E-15 T 21-04-2016 IPR023614 Porin domain RAF_RS00515 e302b5e3b8cb15f70fe6ce441cdb522c 438 Gene3D G3DSA:2.40.160.10 258 438 8.3E-15 T 21-04-2016 IPR023614 Porin domain RAF_RS00515 e302b5e3b8cb15f70fe6ce441cdb522c 438 Pfam PF13609 Gram-negative porin 12 412 6.2E-24 T 21-04-2016 RAF_RS00920 134c786d867c3f2b76ef56e2a8353aa1 145 Gene3D G3DSA:1.10.10.250 74 143 2.6E-27 T 21-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 RAF_RS00920 134c786d867c3f2b76ef56e2a8353aa1 145 Pfam PF00298 Ribosomal protein L11, RNA binding domain 73 142 1.8E-22 T 21-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 RAF_RS00920 134c786d867c3f2b76ef56e2a8353aa1 145 SUPERFAMILY SSF46906 69 142 1.44E-23 T 21-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 RAF_RS00920 134c786d867c3f2b76ef56e2a8353aa1 145 PANTHER PTHR11661 8 144 6.6E-57 T 21-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 RAF_RS00920 134c786d867c3f2b76ef56e2a8353aa1 145 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 6 144 28.162 T 21-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 RAF_RS00920 134c786d867c3f2b76ef56e2a8353aa1 145 Gene3D G3DSA:3.30.1550.10 4 73 1.1E-30 T 21-04-2016 IPR020784 Ribosomal protein L11, N-terminal RAF_RS00920 134c786d867c3f2b76ef56e2a8353aa1 145 SMART SM00649 10 143 3.2E-74 T 21-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 RAF_RS00920 134c786d867c3f2b76ef56e2a8353aa1 145 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 4 143 5.7E-62 T 21-04-2016 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 RAF_RS00920 134c786d867c3f2b76ef56e2a8353aa1 145 ProSitePatterns PS00359 Ribosomal protein L11 signature. 129 144 - T 21-04-2016 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 RAF_RS00920 134c786d867c3f2b76ef56e2a8353aa1 145 Pfam PF03946 Ribosomal protein L11, N-terminal domain 10 68 4.8E-24 T 21-04-2016 IPR020784 Ribosomal protein L11, N-terminal RAF_RS00920 134c786d867c3f2b76ef56e2a8353aa1 145 SUPERFAMILY SSF54747 4 74 2.35E-25 T 21-04-2016 IPR020784 Ribosomal protein L11, N-terminal RAF_RS00920 134c786d867c3f2b76ef56e2a8353aa1 145 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 38 75 3.0E-16 T 21-04-2016 RAF_RS03660 fbbcc2e703b78e27ae2b081234551308 63 Gene3D G3DSA:3.40.630.30 3 56 5.0E-4 T 21-04-2016 IPR016181 Acyl-CoA N-acyltransferase RAF_RS01360 6bf2373d13cc2a4e0194e0323e69b107 595 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 197 210 - T 21-04-2016 IPR018181 Heat shock protein 70, conserved site RAF_RS01360 6bf2373d13cc2a4e0194e0323e69b107 595 SUPERFAMILY SSF100934 483 592 2.55E-14 T 21-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain RAF_RS01360 6bf2373d13cc2a4e0194e0323e69b107 595 SUPERFAMILY SSF100920 363 515 3.01E-47 T 21-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain RAF_RS01360 6bf2373d13cc2a4e0194e0323e69b107 595 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 312 326 - T 21-04-2016 IPR018181 Heat shock protein 70, conserved site RAF_RS01360 6bf2373d13cc2a4e0194e0323e69b107 595 PRINTS PR00301 70kDa heat shock protein signature 20 33 7.5E-37 T 21-04-2016 IPR013126 Heat shock protein 70 family RAF_RS01360 6bf2373d13cc2a4e0194e0323e69b107 595 PRINTS PR00301 70kDa heat shock protein signature 444 460 7.5E-37 T 21-04-2016 IPR013126 Heat shock protein 70 family RAF_RS01360 6bf2373d13cc2a4e0194e0323e69b107 595 PRINTS PR00301 70kDa heat shock protein signature 340 360 7.5E-37 T 21-04-2016 IPR013126 Heat shock protein 70 family RAF_RS01360 6bf2373d13cc2a4e0194e0323e69b107 595 PRINTS PR00301 70kDa heat shock protein signature 363 382 7.5E-37 T 21-04-2016 IPR013126 Heat shock protein 70 family RAF_RS01360 6bf2373d13cc2a4e0194e0323e69b107 595 PRINTS PR00301 70kDa heat shock protein signature 144 164 7.5E-37 T 21-04-2016 IPR013126 Heat shock protein 70 family RAF_RS01360 6bf2373d13cc2a4e0194e0323e69b107 595 PRINTS PR00301 70kDa heat shock protein signature 309 325 7.5E-37 T 21-04-2016 IPR013126 Heat shock protein 70 family RAF_RS01360 6bf2373d13cc2a4e0194e0323e69b107 595 Gene3D G3DSA:3.30.420.40 125 203 4.4E-47 T 21-04-2016 RAF_RS01360 6bf2373d13cc2a4e0194e0323e69b107 595 Gene3D G3DSA:3.30.420.40 20 83 4.4E-47 T 21-04-2016 RAF_RS01360 6bf2373d13cc2a4e0194e0323e69b107 595 Hamap MF_00679 Chaperone protein HscA [hscA]. 1 594 36.138 T 21-04-2016 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 RAF_RS01360 6bf2373d13cc2a4e0194e0323e69b107 595 Gene3D G3DSA:2.60.34.10 346 516 1.7E-53 T 21-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain RAF_RS01360 6bf2373d13cc2a4e0194e0323e69b107 595 PANTHER PTHR19375 19 549 1.2E-157 T 21-04-2016 RAF_RS01360 6bf2373d13cc2a4e0194e0323e69b107 595 SUPERFAMILY SSF53067 192 356 1.24E-41 T 21-04-2016 RAF_RS01360 6bf2373d13cc2a4e0194e0323e69b107 595 Gene3D G3DSA:3.30.420.40 204 336 1.3E-29 T 21-04-2016 RAF_RS01360 6bf2373d13cc2a4e0194e0323e69b107 595 Pfam PF00012 Hsp70 protein 21 574 9.5E-130 T 21-04-2016 IPR013126 Heat shock protein 70 family RAF_RS01360 6bf2373d13cc2a4e0194e0323e69b107 595 SUPERFAMILY SSF53067 20 189 5.44E-38 T 21-04-2016 RAF_RS01360 6bf2373d13cc2a4e0194e0323e69b107 595 Gene3D G3DSA:1.20.1270.10 517 571 5.8E-4 T 21-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain RAF_RS02550 455bb1b1be62f004cf0b46d017e9a6f3 267 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 31 140 2.6E-6 T 21-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RAF_RS02550 455bb1b1be62f004cf0b46d017e9a6f3 267 Gene3D G3DSA:3.40.80.10 25 174 9.9E-24 T 21-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RAF_RS02550 455bb1b1be62f004cf0b46d017e9a6f3 267 SUPERFAMILY SSF47090 186 232 3.4E-5 T 21-04-2016 IPR002477 Peptidoglycan binding-like RAF_RS02550 455bb1b1be62f004cf0b46d017e9a6f3 267 SUPERFAMILY SSF55846 20 175 9.21E-26 T 21-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RAF_RS02550 455bb1b1be62f004cf0b46d017e9a6f3 267 Gene3D G3DSA:1.10.101.10 187 232 1.7E-5 T 21-04-2016 IPR002477 Peptidoglycan binding-like RAF_RS02550 455bb1b1be62f004cf0b46d017e9a6f3 267 PANTHER PTHR30417 53 231 1.2E-13 T 21-04-2016 RAF_RS02550 455bb1b1be62f004cf0b46d017e9a6f3 267 Pfam PF01471 Putative peptidoglycan binding domain 193 231 1.5E-5 T 21-04-2016 IPR002477 Peptidoglycan binding-like RAF_RS03020 165b8f838067bf21df784c5a8b05ec48 835 Pfam PF08264 Anticodon-binding domain of tRNA 679 797 7.2E-17 T 21-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 RAF_RS03020 165b8f838067bf21df784c5a8b05ec48 835 Gene3D G3DSA:3.90.740.10 217 415 1.0E-46 T 21-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RAF_RS03020 165b8f838067bf21df784c5a8b05ec48 835 SUPERFAMILY SSF47323 645 835 1.44E-30 T 21-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS03020 165b8f838067bf21df784c5a8b05ec48 835 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 1 835 22.152 T 21-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RAF_RS03020 165b8f838067bf21df784c5a8b05ec48 835 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 2 835 0.0 T 21-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RAF_RS03020 165b8f838067bf21df784c5a8b05ec48 835 Gene3D G3DSA:3.40.50.620 416 565 1.5E-145 T 21-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS03020 165b8f838067bf21df784c5a8b05ec48 835 Gene3D G3DSA:3.40.50.620 2 216 1.5E-145 T 21-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS03020 165b8f838067bf21df784c5a8b05ec48 835 Gene3D G3DSA:3.40.50.620 601 630 1.5E-145 T 21-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS03020 165b8f838067bf21df784c5a8b05ec48 835 SUPERFAMILY SSF50677 220 406 1.15E-43 T 21-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RAF_RS03020 165b8f838067bf21df784c5a8b05ec48 835 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 36 47 - T 21-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS03020 165b8f838067bf21df784c5a8b05ec48 835 Gene3D G3DSA:1.10.730.10 631 771 2.0E-37 T 21-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS03020 165b8f838067bf21df784c5a8b05ec48 835 SUPERFAMILY SSF52374 3 220 1.47E-147 T 21-04-2016 RAF_RS03020 165b8f838067bf21df784c5a8b05ec48 835 SUPERFAMILY SSF52374 407 650 1.47E-147 T 21-04-2016 RAF_RS03020 165b8f838067bf21df784c5a8b05ec48 835 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 8 165 5.9E-25 T 21-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS03020 165b8f838067bf21df784c5a8b05ec48 835 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 601 642 2.1E-7 T 21-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS03020 165b8f838067bf21df784c5a8b05ec48 835 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 408 564 4.4E-9 T 21-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS03020 165b8f838067bf21df784c5a8b05ec48 835 PANTHER PTHR11946 293 563 0.0 T 21-04-2016 RAF_RS03020 165b8f838067bf21df784c5a8b05ec48 835 PANTHER PTHR11946 596 835 0.0 T 21-04-2016 RAF_RS03020 165b8f838067bf21df784c5a8b05ec48 835 PANTHER PTHR11946 1 200 0.0 T 21-04-2016 RAF_RS03020 165b8f838067bf21df784c5a8b05ec48 835 PANTHER PTHR11946 235 276 0.0 T 21-04-2016 RAF_RS03020 165b8f838067bf21df784c5a8b05ec48 835 PANTHER PTHR11946:SF84 293 563 0.0 T 21-04-2016 RAF_RS03020 165b8f838067bf21df784c5a8b05ec48 835 PANTHER PTHR11946:SF84 596 835 0.0 T 21-04-2016 RAF_RS03020 165b8f838067bf21df784c5a8b05ec48 835 PANTHER PTHR11946:SF84 1 200 0.0 T 21-04-2016 RAF_RS03020 165b8f838067bf21df784c5a8b05ec48 835 PANTHER PTHR11946:SF84 235 276 0.0 T 21-04-2016 RAF_RS03020 165b8f838067bf21df784c5a8b05ec48 835 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 216 393 2.3E-57 T 21-04-2016 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 RAF_RS03020 165b8f838067bf21df784c5a8b05ec48 835 PRINTS PR00985 Leucyl-tRNA synthetase signature 478 496 6.9E-48 T 21-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RAF_RS03020 165b8f838067bf21df784c5a8b05ec48 835 PRINTS PR00985 Leucyl-tRNA synthetase signature 121 138 6.9E-48 T 21-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RAF_RS03020 165b8f838067bf21df784c5a8b05ec48 835 PRINTS PR00985 Leucyl-tRNA synthetase signature 549 559 6.9E-48 T 21-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RAF_RS03020 165b8f838067bf21df784c5a8b05ec48 835 PRINTS PR00985 Leucyl-tRNA synthetase signature 147 163 6.9E-48 T 21-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RAF_RS03020 165b8f838067bf21df784c5a8b05ec48 835 PRINTS PR00985 Leucyl-tRNA synthetase signature 179 192 6.9E-48 T 21-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RAF_RS03020 165b8f838067bf21df784c5a8b05ec48 835 PRINTS PR00985 Leucyl-tRNA synthetase signature 516 538 6.9E-48 T 21-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RAF_RS03020 165b8f838067bf21df784c5a8b05ec48 835 PRINTS PR00985 Leucyl-tRNA synthetase signature 209 228 6.9E-48 T 21-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 RAF_RS04490 466e0545ba4e64e3ee98500d593c474a 419 SUPERFAMILY SSF55205 1 418 2.13E-127 T 21-04-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 RAF_RS04490 466e0545ba4e64e3ee98500d593c474a 419 Gene3D G3DSA:3.65.10.10 224 418 8.0E-50 T 21-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 RAF_RS04490 466e0545ba4e64e3ee98500d593c474a 419 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 419 44.017 T 21-04-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RAF_RS04490 466e0545ba4e64e3ee98500d593c474a 419 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 418 4.1E-178 T 21-04-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RAF_RS04490 466e0545ba4e64e3ee98500d593c474a 419 Gene3D G3DSA:3.65.10.10 21 223 1.6E-60 T 21-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 RAF_RS04490 466e0545ba4e64e3ee98500d593c474a 419 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 409 6.6E-92 T 21-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 RAF_RS04490 466e0545ba4e64e3ee98500d593c474a 419 PANTHER PTHR21090 1 419 6.4E-168 T 21-04-2016 RAF_RS03450 f02608dbc5ae4161529fc907b734a8be 878 SUPERFAMILY SSF56059 1 385 8.24E-127 T 21-04-2016 RAF_RS03450 f02608dbc5ae4161529fc907b734a8be 878 PANTHER PTHR22931:SF9 1 876 0.0 T 21-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RAF_RS03450 f02608dbc5ae4161529fc907b734a8be 878 Gene3D G3DSA:3.50.30.10 408 510 2.6E-37 T 21-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RAF_RS03450 f02608dbc5ae4161529fc907b734a8be 878 Pfam PF00391 PEP-utilising enzyme, mobile domain 426 507 6.6E-27 T 21-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RAF_RS03450 f02608dbc5ae4161529fc907b734a8be 878 SUPERFAMILY SSF51621 516 876 3.77E-118 T 21-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RAF_RS03450 f02608dbc5ae4161529fc907b734a8be 878 Gene3D G3DSA:3.30.1490.20 4 114 6.7E-51 T 21-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RAF_RS03450 f02608dbc5ae4161529fc907b734a8be 878 Gene3D G3DSA:3.30.1490.20 202 245 6.7E-51 T 21-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RAF_RS03450 f02608dbc5ae4161529fc907b734a8be 878 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 765 783 - T 21-04-2016 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 RAF_RS03450 f02608dbc5ae4161529fc907b734a8be 878 Gene3D G3DSA:1.20.80.30 115 195 3.6E-23 T 21-04-2016 RAF_RS03450 f02608dbc5ae4161529fc907b734a8be 878 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 305 364 7.3E-11 T 21-04-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 RAF_RS03450 f02608dbc5ae4161529fc907b734a8be 878 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 21 298 8.6E-42 T 21-04-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 RAF_RS03450 f02608dbc5ae4161529fc907b734a8be 878 PIRSF PIRSF000853 1 878 0.0 T 21-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RAF_RS03450 f02608dbc5ae4161529fc907b734a8be 878 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 454 465 - T 21-04-2016 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 RAF_RS03450 f02608dbc5ae4161529fc907b734a8be 878 PANTHER PTHR22931 1 876 0.0 T 21-04-2016 RAF_RS03450 f02608dbc5ae4161529fc907b734a8be 878 SUPERFAMILY SSF52009 397 516 4.06E-35 T 21-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RAF_RS03450 f02608dbc5ae4161529fc907b734a8be 878 Gene3D G3DSA:1.10.189.10 349 407 8.9E-27 T 21-04-2016 RAF_RS03450 f02608dbc5ae4161529fc907b734a8be 878 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 524 874 2.0E-83 T 21-04-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 RAF_RS03450 f02608dbc5ae4161529fc907b734a8be 878 TIGRFAM TIGR01828 pyru_phos_dikin: pyruvate, phosphate dikinase 2 875 0.0 T 21-04-2016 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RAF_RS03450 f02608dbc5ae4161529fc907b734a8be 878 Gene3D G3DSA:3.30.470.20 246 348 6.4E-37 T 21-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RAF_RS03450 f02608dbc5ae4161529fc907b734a8be 878 Gene3D G3DSA:3.20.20.60 537 876 3.2E-127 T 21-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 RAF_RS03045 742cefbf35b02d0f264c719598e63308 479 SUPERFAMILY SSF55874 322 478 1.3E-26 T 21-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RAF_RS03045 742cefbf35b02d0f264c719598e63308 479 SMART SM00388 272 330 8.4E-15 T 21-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAF_RS03045 742cefbf35b02d0f264c719598e63308 479 SUPERFAMILY SSF47384 258 329 2.55E-14 T 21-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAF_RS03045 742cefbf35b02d0f264c719598e63308 479 Pfam PF00512 His Kinase A (phospho-acceptor) domain 273 329 1.8E-10 T 21-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAF_RS03045 742cefbf35b02d0f264c719598e63308 479 Gene3D G3DSA:1.10.287.130 263 317 1.1E-15 T 21-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAF_RS03045 742cefbf35b02d0f264c719598e63308 479 SMART SM00387 369 479 3.9E-22 T 21-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RAF_RS03045 742cefbf35b02d0f264c719598e63308 479 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 373 477 8.4E-16 T 21-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RAF_RS03045 742cefbf35b02d0f264c719598e63308 479 PANTHER PTHR24423 251 478 6.3E-47 T 21-04-2016 RAF_RS03045 742cefbf35b02d0f264c719598e63308 479 PANTHER PTHR24423 59 84 6.3E-47 T 21-04-2016 RAF_RS03045 742cefbf35b02d0f264c719598e63308 479 Gene3D G3DSA:3.30.565.10 318 478 4.5E-27 T 21-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RAF_RS03045 742cefbf35b02d0f264c719598e63308 479 PRINTS PR00344 Bacterial sensor protein C-terminal signature 421 431 1.9E-11 T 21-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RAF_RS03045 742cefbf35b02d0f264c719598e63308 479 PRINTS PR00344 Bacterial sensor protein C-terminal signature 464 477 1.9E-11 T 21-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RAF_RS03045 742cefbf35b02d0f264c719598e63308 479 PRINTS PR00344 Bacterial sensor protein C-terminal signature 439 457 1.9E-11 T 21-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RAF_RS03045 742cefbf35b02d0f264c719598e63308 479 PRINTS PR00344 Bacterial sensor protein C-terminal signature 403 417 1.9E-11 T 21-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RAF_RS03045 742cefbf35b02d0f264c719598e63308 479 TIGRFAM TIGR03775 RPE3: rickettsial palindromic element RPE3 domain 11 52 1.3E-21 T 21-04-2016 IPR022437 Rickettsia palindromic element RPE3 RAF_RS02745 563bf1b0ae5eaf086ef24f51cfcd36ed 342 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 249 323 5.0E-36 T 21-04-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 RAF_RS02745 563bf1b0ae5eaf086ef24f51cfcd36ed 342 SUPERFAMILY SSF52540 18 243 3.88E-55 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02745 563bf1b0ae5eaf086ef24f51cfcd36ed 342 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 251 324 1.3E-30 T 21-04-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 RAF_RS02745 563bf1b0ae5eaf086ef24f51cfcd36ed 342 Gene3D G3DSA:1.10.8.60 181 252 3.7E-28 T 21-04-2016 RAF_RS02745 563bf1b0ae5eaf086ef24f51cfcd36ed 342 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 8 233 5.0E-111 T 21-04-2016 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 RAF_RS02745 563bf1b0ae5eaf086ef24f51cfcd36ed 342 SUPERFAMILY SSF46785 254 328 1.36E-23 T 21-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RAF_RS02745 563bf1b0ae5eaf086ef24f51cfcd36ed 342 Gene3D G3DSA:3.40.50.300 18 172 3.2E-33 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02745 563bf1b0ae5eaf086ef24f51cfcd36ed 342 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 342 154.352 T 21-04-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 RAF_RS02745 563bf1b0ae5eaf086ef24f51cfcd36ed 342 PANTHER PTHR13779 8 330 1.6E-157 T 21-04-2016 RAF_RS02745 563bf1b0ae5eaf086ef24f51cfcd36ed 342 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 23 325 7.7E-137 T 21-04-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 RAF_RS02745 563bf1b0ae5eaf086ef24f51cfcd36ed 342 SMART SM00382 49 180 7.2E-13 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS02745 563bf1b0ae5eaf086ef24f51cfcd36ed 342 Gene3D G3DSA:1.10.10.10 255 326 2.4E-31 T 21-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RAF_RS02745 563bf1b0ae5eaf086ef24f51cfcd36ed 342 PANTHER PTHR13779:SF25 8 330 1.6E-157 T 21-04-2016 RAF_RS05030 f0ca7f51604dc8ab2ab5da24b0564baf 212 TIGRFAM TIGR01351 adk: adenylate kinase 3 209 4.9E-73 T 21-04-2016 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RAF_RS05030 f0ca7f51604dc8ab2ab5da24b0564baf 212 Hamap MF_00235 Adenylate kinase [adk]. 1 210 38.963 T 21-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RAF_RS05030 f0ca7f51604dc8ab2ab5da24b0564baf 212 PANTHER PTHR23359 1 209 6.4E-74 T 21-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RAF_RS05030 f0ca7f51604dc8ab2ab5da24b0564baf 212 Pfam PF00406 Adenylate kinase 6 187 2.3E-45 T 21-04-2016 RAF_RS05030 f0ca7f51604dc8ab2ab5da24b0564baf 212 SUPERFAMILY SSF52540 2 210 1.18E-38 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05030 f0ca7f51604dc8ab2ab5da24b0564baf 212 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 21-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RAF_RS05030 f0ca7f51604dc8ab2ab5da24b0564baf 212 Pfam PF05191 Adenylate kinase, active site lid 123 159 8.2E-10 T 21-04-2016 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RAF_RS05030 f0ca7f51604dc8ab2ab5da24b0564baf 212 PRINTS PR00094 Adenylate kinase signature 81 97 1.4E-29 T 21-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RAF_RS05030 f0ca7f51604dc8ab2ab5da24b0564baf 212 PRINTS PR00094 Adenylate kinase signature 4 17 1.4E-29 T 21-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RAF_RS05030 f0ca7f51604dc8ab2ab5da24b0564baf 212 PRINTS PR00094 Adenylate kinase signature 32 46 1.4E-29 T 21-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RAF_RS05030 f0ca7f51604dc8ab2ab5da24b0564baf 212 PRINTS PR00094 Adenylate kinase signature 174 188 1.4E-29 T 21-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RAF_RS05030 f0ca7f51604dc8ab2ab5da24b0564baf 212 PRINTS PR00094 Adenylate kinase signature 157 172 1.4E-29 T 21-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 RAF_RS05030 f0ca7f51604dc8ab2ab5da24b0564baf 212 Gene3D G3DSA:3.40.50.300 2 208 4.0E-67 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02275 c2691f36f15706e6c0c7351d31561c0c 103 SUPERFAMILY SSF55387 1 99 6.63E-30 T 21-04-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 RAF_RS02275 c2691f36f15706e6c0c7351d31561c0c 103 ProSitePatterns PS01344 Frataxin family signature. 49 63 - T 21-04-2016 IPR020895 Frataxin conserved site RAF_RS02275 c2691f36f15706e6c0c7351d31561c0c 103 SMART SM01219 1 99 1.4E-36 T 21-04-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 RAF_RS02275 c2691f36f15706e6c0c7351d31561c0c 103 TIGRFAM TIGR03421 FeS_CyaY: iron donor protein CyaY 2 98 5.8E-26 T 21-04-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 RAF_RS02275 c2691f36f15706e6c0c7351d31561c0c 103 Hamap MF_00142 Protein CyaY [cyaY]. 1 103 17.544 T 21-04-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 RAF_RS02275 c2691f36f15706e6c0c7351d31561c0c 103 Pfam PF01491 Frataxin-like domain 1 99 4.5E-26 T 21-04-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 RAF_RS02275 c2691f36f15706e6c0c7351d31561c0c 103 PANTHER PTHR16821 1 95 3.9E-26 T 21-04-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 RAF_RS02275 c2691f36f15706e6c0c7351d31561c0c 103 Gene3D G3DSA:3.30.920.10 1 100 6.5E-30 T 21-04-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 RAF_RS01905 ba1d09b076cba183c9bc04798f861e24 600 PANTHER PTHR23115:SF175 400 598 0.0 T 21-04-2016 RAF_RS01905 ba1d09b076cba183c9bc04798f861e24 600 PANTHER PTHR23115:SF175 1 376 0.0 T 21-04-2016 RAF_RS01905 ba1d09b076cba183c9bc04798f861e24 600 SUPERFAMILY SSF54980 296 373 3.38E-17 T 21-04-2016 IPR009022 Elongation factor G, III-V domain RAF_RS01905 ba1d09b076cba183c9bc04798f861e24 600 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 45 60 - T 21-04-2016 IPR031157 Tr-type G domain, conserved site RAF_RS01905 ba1d09b076cba183c9bc04798f861e24 600 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 175 2.0E-16 T 21-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RAF_RS01905 ba1d09b076cba183c9bc04798f861e24 600 TIGRFAM TIGR01393 lepA: elongation factor 4 6 597 7.7E-286 T 21-04-2016 IPR006297 Elongation factor 4 GO:0005525 RAF_RS01905 ba1d09b076cba183c9bc04798f861e24 600 Gene3D G3DSA:3.30.70.870 296 372 1.3E-24 T 21-04-2016 RAF_RS01905 ba1d09b076cba183c9bc04798f861e24 600 PANTHER PTHR23115 400 598 0.0 T 21-04-2016 RAF_RS01905 ba1d09b076cba183c9bc04798f861e24 600 PANTHER PTHR23115 1 376 0.0 T 21-04-2016 RAF_RS01905 ba1d09b076cba183c9bc04798f861e24 600 Hamap MF_00071 Elongation factor 4 [lepA]. 1 600 290.885 T 21-04-2016 IPR006297 Elongation factor 4 GO:0005525 RAF_RS01905 ba1d09b076cba183c9bc04798f861e24 600 Pfam PF03144 Elongation factor Tu domain 2 208 278 1.8E-7 T 21-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RAF_RS01905 ba1d09b076cba183c9bc04798f861e24 600 SUPERFAMILY SSF54980 403 496 7.67E-23 T 21-04-2016 IPR009022 Elongation factor G, III-V domain RAF_RS01905 ba1d09b076cba183c9bc04798f861e24 600 Gene3D G3DSA:2.40.30.10 199 292 1.4E-20 T 21-04-2016 RAF_RS01905 ba1d09b076cba183c9bc04798f861e24 600 Pfam PF00679 Elongation factor G C-terminus 402 485 2.8E-20 T 21-04-2016 IPR000640 Translation elongation factor EFG, V domain RAF_RS01905 ba1d09b076cba183c9bc04798f861e24 600 PRINTS PR00315 GTP-binding elongation factor signature 77 87 7.6E-14 T 21-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAF_RS01905 ba1d09b076cba183c9bc04798f861e24 600 PRINTS PR00315 GTP-binding elongation factor signature 93 104 7.6E-14 T 21-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAF_RS01905 ba1d09b076cba183c9bc04798f861e24 600 PRINTS PR00315 GTP-binding elongation factor signature 9 22 7.6E-14 T 21-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAF_RS01905 ba1d09b076cba183c9bc04798f861e24 600 PRINTS PR00315 GTP-binding elongation factor signature 52 60 7.6E-14 T 21-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAF_RS01905 ba1d09b076cba183c9bc04798f861e24 600 PRINTS PR00315 GTP-binding elongation factor signature 129 138 7.6E-14 T 21-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAF_RS01905 ba1d09b076cba183c9bc04798f861e24 600 SMART SM00838 401 487 0.0041 T 21-04-2016 IPR000640 Translation elongation factor EFG, V domain RAF_RS01905 ba1d09b076cba183c9bc04798f861e24 600 Gene3D G3DSA:3.30.70.240 404 491 9.0E-20 T 21-04-2016 IPR000640 Translation elongation factor EFG, V domain RAF_RS01905 ba1d09b076cba183c9bc04798f861e24 600 SUPERFAMILY SSF52540 1 233 1.77E-52 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01905 ba1d09b076cba183c9bc04798f861e24 600 Pfam PF06421 GTP-binding protein LepA C-terminus 490 596 2.8E-48 T 21-04-2016 IPR013842 GTP-binding protein LepA, C-terminal RAF_RS01905 ba1d09b076cba183c9bc04798f861e24 600 Pfam PF00009 Elongation factor Tu GTP binding domain 6 184 2.4E-49 T 21-04-2016 RAF_RS01905 ba1d09b076cba183c9bc04798f861e24 600 Gene3D G3DSA:3.40.50.300 1 198 3.6E-55 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06630 752a58dfc6dc19666b97c388a844da35 105 SMART SM01152 10 90 1.1E-21 T 21-04-2016 IPR003746 Protein of unknown function DUF167 RAF_RS06630 752a58dfc6dc19666b97c388a844da35 105 Hamap MF_00634 UPF0235 protein YggU [yggU]. 10 102 17.401 T 21-04-2016 IPR003746 Protein of unknown function DUF167 RAF_RS06630 752a58dfc6dc19666b97c388a844da35 105 Pfam PF02594 Uncharacterised ACR, YggU family COG1872 15 89 6.5E-21 T 21-04-2016 IPR003746 Protein of unknown function DUF167 RAF_RS06630 752a58dfc6dc19666b97c388a844da35 105 Gene3D G3DSA:3.30.1200.10 7 104 6.2E-22 T 21-04-2016 IPR003746 Protein of unknown function DUF167 RAF_RS06630 752a58dfc6dc19666b97c388a844da35 105 SUPERFAMILY SSF69786 4 103 1.7E-23 T 21-04-2016 IPR003746 Protein of unknown function DUF167 RAF_RS06535 580c1fa58b77d76a480cccfd93410875 116 Gene3D G3DSA:3.30.70.20 3 51 3.1E-16 T 21-04-2016 RAF_RS06535 580c1fa58b77d76a480cccfd93410875 116 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 44 55 - T 21-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RAF_RS06535 580c1fa58b77d76a480cccfd93410875 116 PANTHER PTHR11938:SF101 1 85 3.8E-25 T 21-04-2016 RAF_RS06535 580c1fa58b77d76a480cccfd93410875 116 Pfam PF11953 Domain of unknown function (DUF3470) 80 108 4.8E-10 T 21-04-2016 IPR022569 Ferredoxin, C-terminal RAF_RS06535 580c1fa58b77d76a480cccfd93410875 116 PANTHER PTHR11938 1 85 3.8E-25 T 21-04-2016 RAF_RS06535 580c1fa58b77d76a480cccfd93410875 116 SUPERFAMILY SSF54862 1 64 8.15E-20 T 21-04-2016 RAF_RS06535 580c1fa58b77d76a480cccfd93410875 116 PRINTS PR00354 7Fe ferredoxin signature 9 19 9.6E-17 T 21-04-2016 IPR000813 7Fe ferredoxin GO:0009055 RAF_RS06535 580c1fa58b77d76a480cccfd93410875 116 PRINTS PR00354 7Fe ferredoxin signature 19 29 9.6E-17 T 21-04-2016 IPR000813 7Fe ferredoxin GO:0009055 RAF_RS06535 580c1fa58b77d76a480cccfd93410875 116 PRINTS PR00354 7Fe ferredoxin signature 39 56 9.6E-17 T 21-04-2016 IPR000813 7Fe ferredoxin GO:0009055 RAF_RS06535 580c1fa58b77d76a480cccfd93410875 116 Gene3D G3DSA:1.10.1060.10 52 96 9.0E-8 T 21-04-2016 RAF_RS06535 580c1fa58b77d76a480cccfd93410875 116 Pfam PF13187 4Fe-4S dicluster domain 8 59 1.2E-6 T 21-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RAF_RS03810 8c3db38d023fdb437b8cce4dd9cf2be6 417 Gene3D G3DSA:1.20.1250.20 6 189 1.3E-7 T 21-04-2016 RAF_RS03810 8c3db38d023fdb437b8cce4dd9cf2be6 417 Gene3D G3DSA:1.20.1250.20 235 413 6.3E-13 T 21-04-2016 RAF_RS03810 8c3db38d023fdb437b8cce4dd9cf2be6 417 Pfam PF07690 Major Facilitator Superfamily 10 336 6.9E-17 T 21-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAF_RS03810 8c3db38d023fdb437b8cce4dd9cf2be6 417 SUPERFAMILY SSF103473 7 414 9.55E-34 T 21-04-2016 IPR020846 Major facilitator superfamily domain RAF_RS03810 8c3db38d023fdb437b8cce4dd9cf2be6 417 PANTHER PTHR12778 5 413 3.5E-53 T 21-04-2016 RAF_RS02150 c023304ad3a3bf9547daabdb9e029955 65 PANTHER PTHR19211:SF38 3 64 4.8E-16 T 21-04-2016 RAF_RS02150 c023304ad3a3bf9547daabdb9e029955 65 PANTHER PTHR19211 3 64 4.8E-16 T 21-04-2016 RAF_RS02150 c023304ad3a3bf9547daabdb9e029955 65 Pfam PF00005 ABC transporter 8 53 3.6E-10 T 21-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAF_RS02150 c023304ad3a3bf9547daabdb9e029955 65 SUPERFAMILY SSF52540 6 59 3.58E-11 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02150 c023304ad3a3bf9547daabdb9e029955 65 Gene3D G3DSA:3.40.50.300 6 65 6.5E-13 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05825 a801867ed711ed25105ef84578c84cb8 296 Pfam PF04055 Radical SAM superfamily 60 219 4.0E-13 T 21-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RAF_RS05825 a801867ed711ed25105ef84578c84cb8 296 Hamap MF_00206 Lipoyl synthase [lipA]. 1 292 150.626 T 21-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RAF_RS05825 a801867ed711ed25105ef84578c84cb8 296 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 7 42 6.4E-7 T 21-04-2016 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RAF_RS05825 a801867ed711ed25105ef84578c84cb8 296 PANTHER PTHR10949 6 285 1.4E-153 T 21-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RAF_RS05825 a801867ed711ed25105ef84578c84cb8 296 SUPERFAMILY SSF102114 21 282 3.92E-62 T 21-04-2016 RAF_RS05825 a801867ed711ed25105ef84578c84cb8 296 TIGRFAM TIGR00510 lipA: lipoyl synthase 3 287 1.1E-118 T 21-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RAF_RS05825 a801867ed711ed25105ef84578c84cb8 296 Gene3D G3DSA:3.20.20.70 22 288 7.8E-69 T 21-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RAF_RS05825 a801867ed711ed25105ef84578c84cb8 296 PIRSF PIRSF005963 1 296 3.9E-134 T 21-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 RAF_RS05825 a801867ed711ed25105ef84578c84cb8 296 SMART SM00729 53 260 9.7E-15 T 21-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RAF_RS05100 e734ae102cfe9a8ef98718b936573743 136 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 21-04-2016 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05100 e734ae102cfe9a8ef98718b936573743 136 PRINTS PR00060 Ribosomal protein L16 signature 58 87 3.2E-35 T 21-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RAF_RS05100 e734ae102cfe9a8ef98718b936573743 136 PRINTS PR00060 Ribosomal protein L16 signature 42 53 3.2E-35 T 21-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RAF_RS05100 e734ae102cfe9a8ef98718b936573743 136 PRINTS PR00060 Ribosomal protein L16 signature 24 36 3.2E-35 T 21-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RAF_RS05100 e734ae102cfe9a8ef98718b936573743 136 PRINTS PR00060 Ribosomal protein L16 signature 88 117 3.2E-35 T 21-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RAF_RS05100 e734ae102cfe9a8ef98718b936573743 136 SUPERFAMILY SSF54686 1 134 1.03E-49 T 21-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 RAF_RS05100 e734ae102cfe9a8ef98718b936573743 136 PANTHER PTHR12220 1 134 1.3E-59 T 21-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RAF_RS05100 e734ae102cfe9a8ef98718b936573743 136 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 35.424 T 21-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RAF_RS05100 e734ae102cfe9a8ef98718b936573743 136 Gene3D G3DSA:3.90.1170.10 23 134 1.7E-46 T 21-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 RAF_RS05100 e734ae102cfe9a8ef98718b936573743 136 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 127 4.6E-52 T 21-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 RAF_RS05100 e734ae102cfe9a8ef98718b936573743 136 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 21-04-2016 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05100 e734ae102cfe9a8ef98718b936573743 136 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 6.0E-42 T 21-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 RAF_RS04955 ddfcae4c5d8c9b8a56ea40fd2c3bc76f 351 PANTHER PTHR21716 1 337 4.4E-68 T 21-04-2016 IPR002549 Transmembrane protein TqsA-like RAF_RS04955 ddfcae4c5d8c9b8a56ea40fd2c3bc76f 351 Pfam PF01594 Domain of unknown function DUF20 5 336 2.9E-55 T 21-04-2016 IPR002549 Transmembrane protein TqsA-like RAF_RS05140 92e5abb64a880624f6365e4d6c4267f3 105 Pfam PF00338 Ribosomal protein S10p/S20e 6 99 1.2E-32 T 21-04-2016 IPR027486 Ribosomal protein S10 domain RAF_RS05140 92e5abb64a880624f6365e4d6c4267f3 105 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 2 101 24.494 T 21-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RAF_RS05140 92e5abb64a880624f6365e4d6c4267f3 105 SUPERFAMILY SSF54999 4 100 5.75E-34 T 21-04-2016 IPR027486 Ribosomal protein S10 domain RAF_RS05140 92e5abb64a880624f6365e4d6c4267f3 105 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 3 100 1.6E-43 T 21-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RAF_RS05140 92e5abb64a880624f6365e4d6c4267f3 105 Gene3D G3DSA:3.30.70.600 3 102 6.9E-40 T 21-04-2016 IPR027486 Ribosomal protein S10 domain RAF_RS05140 92e5abb64a880624f6365e4d6c4267f3 105 SMART SM01403 6 100 1.2E-47 T 21-04-2016 IPR027486 Ribosomal protein S10 domain RAF_RS05140 92e5abb64a880624f6365e4d6c4267f3 105 PRINTS PR00971 Ribosomal protein S10 family signature 60 74 3.7E-17 T 21-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RAF_RS05140 92e5abb64a880624f6365e4d6c4267f3 105 PRINTS PR00971 Ribosomal protein S10 family signature 39 54 3.7E-17 T 21-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RAF_RS05140 92e5abb64a880624f6365e4d6c4267f3 105 PRINTS PR00971 Ribosomal protein S10 family signature 4 17 3.7E-17 T 21-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RAF_RS05140 92e5abb64a880624f6365e4d6c4267f3 105 PANTHER PTHR11700 1 102 1.0E-41 T 21-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 RAF_RS00830 d29732c1c7bc264057a7a78efb7b72d4 129 SUPERFAMILY SSF81593 2 123 2.2E-32 T 21-04-2016 RAF_RS00830 d29732c1c7bc264057a7a78efb7b72d4 129 Gene3D G3DSA:1.20.120.330 3 125 1.9E-42 T 21-04-2016 RAF_RS00830 d29732c1c7bc264057a7a78efb7b72d4 129 TIGRFAM TIGR01987 HI0074: nucleotidyltransferase substrate binding protein, HI0074 family 7 126 3.7E-53 T 21-04-2016 IPR010235 Nucleotidyltransferase substrate binding protein, HI0074 RAF_RS00830 d29732c1c7bc264057a7a78efb7b72d4 129 Pfam PF08780 Nucleotidyltransferase substrate binding protein like 7 123 8.7E-30 T 21-04-2016 IPR010235 Nucleotidyltransferase substrate binding protein, HI0074 RAF_RS01365 9b6e14ce293a500697378bd9852cce27 166 Gene3D G3DSA:1.20.1280.20 110 163 3.7E-4 T 21-04-2016 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 RAF_RS01365 9b6e14ce293a500697378bd9852cce27 166 PANTHER PTHR14021 3 162 1.3E-21 T 21-04-2016 IPR004640 Co-chaperone Hsc20 GO:0006457|GO:0051087 RAF_RS01365 9b6e14ce293a500697378bd9852cce27 166 Pfam PF00226 DnaJ domain 3 69 2.1E-9 T 21-04-2016 IPR001623 DnaJ domain RAF_RS01365 9b6e14ce293a500697378bd9852cce27 166 SMART SM00271 2 65 1.7E-9 T 21-04-2016 IPR001623 DnaJ domain RAF_RS01365 9b6e14ce293a500697378bd9852cce27 166 Gene3D G3DSA:1.10.287.110 2 76 2.5E-20 T 21-04-2016 IPR001623 DnaJ domain RAF_RS01365 9b6e14ce293a500697378bd9852cce27 166 SUPERFAMILY SSF46565 3 73 4.06E-16 T 21-04-2016 IPR001623 DnaJ domain RAF_RS01365 9b6e14ce293a500697378bd9852cce27 166 PANTHER PTHR14021:SF15 3 162 1.3E-21 T 21-04-2016 RAF_RS01365 9b6e14ce293a500697378bd9852cce27 166 Hamap MF_00682 Co-chaperone protein HscB [hscB]. 2 166 16.534 T 21-04-2016 IPR004640 Co-chaperone Hsc20 GO:0006457|GO:0051087 RAF_RS01365 9b6e14ce293a500697378bd9852cce27 166 SUPERFAMILY SSF47144 96 164 4.32E-9 T 21-04-2016 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 RAF_RS01365 9b6e14ce293a500697378bd9852cce27 166 TIGRFAM TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB 14 166 5.8E-48 T 21-04-2016 IPR004640 Co-chaperone Hsc20 GO:0006457|GO:0051087 RAF_RS02145 b943dde72bde29570312df3955c71e81 414 Pfam PF13393 Histidyl-tRNA synthetase 10 313 1.3E-40 T 21-04-2016 RAF_RS02145 b943dde72bde29570312df3955c71e81 414 SUPERFAMILY SSF55681 5 317 9.57E-88 T 21-04-2016 RAF_RS02145 b943dde72bde29570312df3955c71e81 414 Gene3D G3DSA:3.40.50.800 326 413 5.4E-13 T 21-04-2016 IPR004154 Anticodon-binding RAF_RS02145 b943dde72bde29570312df3955c71e81 414 SUPERFAMILY SSF52954 326 414 1.27E-14 T 21-04-2016 IPR004154 Anticodon-binding RAF_RS02145 b943dde72bde29570312df3955c71e81 414 Pfam PF03129 Anticodon binding domain 327 414 8.0E-9 T 21-04-2016 IPR004154 Anticodon-binding RAF_RS02145 b943dde72bde29570312df3955c71e81 414 Gene3D G3DSA:3.30.930.10 221 316 1.2E-81 T 21-04-2016 RAF_RS02145 b943dde72bde29570312df3955c71e81 414 Gene3D G3DSA:3.30.930.10 4 185 1.2E-81 T 21-04-2016 RAF_RS02145 b943dde72bde29570312df3955c71e81 414 PIRSF PIRSF001549 1 414 4.3E-118 T 21-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 RAF_RS02145 b943dde72bde29570312df3955c71e81 414 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 3 414 30.19 T 21-04-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21|Reactome: REACT_71 RAF_RS02145 b943dde72bde29570312df3955c71e81 414 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 6 403 6.9E-132 T 21-04-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21|Reactome: REACT_71 RAF_RS02145 b943dde72bde29570312df3955c71e81 414 PANTHER PTHR11476 1 414 1.8E-152 T 21-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 RAF_RS02145 b943dde72bde29570312df3955c71e81 414 PANTHER PTHR11476:SF9 1 414 1.8E-152 T 21-04-2016 RAF_RS00395 c26aa3ec0f568249030e84842aa066ae 181 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 51 73 - T 21-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RAF_RS00395 c26aa3ec0f568249030e84842aa066ae 181 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 5 178 1.0E-49 T 21-04-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 RAF_RS00395 c26aa3ec0f568249030e84842aa066ae 181 PIRSF PIRSF000847 2 181 4.7E-47 T 21-04-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 RAF_RS00395 c26aa3ec0f568249030e84842aa066ae 181 Pfam PF01066 CDP-alcohol phosphatidyltransferase 6 73 2.8E-19 T 21-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RAF_RS00395 c26aa3ec0f568249030e84842aa066ae 181 PANTHER PTHR14269 6 174 3.7E-41 T 21-04-2016 RAF_RS02825 9dd7ef2b6db26b070336dcbe79c4f61e 315 Pfam PF02016 LD-carboxypeptidase 30 301 2.1E-57 T 21-04-2016 IPR003507 Peptidase family S66 RAF_RS02825 9dd7ef2b6db26b070336dcbe79c4f61e 315 PANTHER PTHR30237 19 297 4.6E-42 T 21-04-2016 RAF_RS02825 9dd7ef2b6db26b070336dcbe79c4f61e 315 Gene3D G3DSA:3.50.30.60 191 304 1.8E-32 T 21-04-2016 IPR027461 LD-carboxypeptidase A, C-terminal domain RAF_RS02825 9dd7ef2b6db26b070336dcbe79c4f61e 315 PIRSF PIRSF028757 23 313 1.1E-87 T 21-04-2016 IPR003507 Peptidase family S66 RAF_RS02825 9dd7ef2b6db26b070336dcbe79c4f61e 315 SUPERFAMILY SSF141986 184 303 2.75E-31 T 21-04-2016 IPR027461 LD-carboxypeptidase A, C-terminal domain RAF_RS02825 9dd7ef2b6db26b070336dcbe79c4f61e 315 SUPERFAMILY SSF52317 29 171 1.51E-25 T 21-04-2016 IPR029062 Class I glutamine amidotransferase-like RAF_RS02825 9dd7ef2b6db26b070336dcbe79c4f61e 315 PANTHER PTHR30237:SF2 19 297 4.6E-42 T 21-04-2016 RAF_RS02825 9dd7ef2b6db26b070336dcbe79c4f61e 315 Gene3D G3DSA:3.40.50.10740 29 176 3.6E-28 T 21-04-2016 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal domain RAF_RS00530 b1a5d771b4f77460fca9a894b35d1f83 237 SUPERFAMILY SSF52172 1 179 1.66E-33 T 21-04-2016 IPR011006 CheY-like superfamily RAF_RS00530 b1a5d771b4f77460fca9a894b35d1f83 237 Gene3D G3DSA:1.10.10.10 123 223 1.8E-27 T 21-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RAF_RS00530 b1a5d771b4f77460fca9a894b35d1f83 237 SMART SM00862 145 221 4.1E-21 T 21-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAF_RS00530 b1a5d771b4f77460fca9a894b35d1f83 237 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 221 3.9E-21 T 21-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAF_RS00530 b1a5d771b4f77460fca9a894b35d1f83 237 Pfam PF00072 Response regulator receiver domain 3 113 1.8E-21 T 21-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RAF_RS00530 b1a5d771b4f77460fca9a894b35d1f83 237 SMART SM00448 1 112 5.1E-32 T 21-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RAF_RS00530 b1a5d771b4f77460fca9a894b35d1f83 237 Gene3D G3DSA:3.40.50.2300 1 121 1.1E-31 T 21-04-2016 RAF_RS00530 b1a5d771b4f77460fca9a894b35d1f83 237 PANTHER PTHR26402 1 223 3.4E-109 T 21-04-2016 RAF_RS00530 b1a5d771b4f77460fca9a894b35d1f83 237 PANTHER PTHR26402:SF553 1 223 3.4E-109 T 21-04-2016 RAF_RS03900 164dfd01a7ddd86736c0c2dc11f8f221 45 Gene3D G3DSA:1.25.40.20 9 44 2.3E-6 T 21-04-2016 IPR020683 Ankyrin repeat-containing domain RAF_RS03900 164dfd01a7ddd86736c0c2dc11f8f221 45 SUPERFAMILY SSF48403 9 44 1.55E-6 T 21-04-2016 IPR020683 Ankyrin repeat-containing domain RAF_RS03380 ed1639f2f1eee3f899f99c5eba842c71 748 SUPERFAMILY SSF55666 149 235 1.23E-24 T 21-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 RAF_RS03380 ed1639f2f1eee3f899f99c5eba842c71 748 Pfam PF01138 3' exoribonuclease family, domain 1 325 457 3.0E-18 T 21-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 RAF_RS03380 ed1639f2f1eee3f899f99c5eba842c71 748 Pfam PF01138 3' exoribonuclease family, domain 1 16 140 5.0E-16 T 21-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 RAF_RS03380 ed1639f2f1eee3f899f99c5eba842c71 748 SUPERFAMILY SSF55666 451 550 6.45E-28 T 21-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 RAF_RS03380 ed1639f2f1eee3f899f99c5eba842c71 748 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 3 694 29.031 T 21-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RAF_RS03380 ed1639f2f1eee3f899f99c5eba842c71 748 SUPERFAMILY SSF54211 2 144 1.37E-44 T 21-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RAF_RS03380 ed1639f2f1eee3f899f99c5eba842c71 748 SUPERFAMILY SSF50249 621 698 8.26E-18 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS03380 ed1639f2f1eee3f899f99c5eba842c71 748 PANTHER PTHR11252 1 744 0.0 T 21-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RAF_RS03380 ed1639f2f1eee3f899f99c5eba842c71 748 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 11 692 1.2E-303 T 21-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RAF_RS03380 ed1639f2f1eee3f899f99c5eba842c71 748 Gene3D G3DSA:3.30.230.70 314 544 5.3E-83 T 21-04-2016 IPR027408 PNPase/RNase PH domain RAF_RS03380 ed1639f2f1eee3f899f99c5eba842c71 748 Gene3D G3DSA:3.30.230.70 3 225 9.6E-74 T 21-04-2016 IPR027408 PNPase/RNase PH domain RAF_RS03380 ed1639f2f1eee3f899f99c5eba842c71 748 SUPERFAMILY SSF54211 295 488 7.59E-43 T 21-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RAF_RS03380 ed1639f2f1eee3f899f99c5eba842c71 748 Pfam PF00575 S1 RNA binding domain 619 691 6.3E-14 T 21-04-2016 IPR003029 S1 domain GO:0003676 RAF_RS03380 ed1639f2f1eee3f899f99c5eba842c71 748 SMART SM00316 621 691 1.6E-18 T 21-04-2016 IPR022967 RNA-binding domain, S1 RAF_RS03380 ed1639f2f1eee3f899f99c5eba842c71 748 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 241 321 1.1E-21 T 21-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RAF_RS03380 ed1639f2f1eee3f899f99c5eba842c71 748 PANTHER PTHR11252:SF0 1 744 0.0 T 21-04-2016 RAF_RS03380 ed1639f2f1eee3f899f99c5eba842c71 748 Gene3D G3DSA:2.40.50.140 621 695 1.8E-18 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS03380 ed1639f2f1eee3f899f99c5eba842c71 748 PIRSF PIRSF005499 1 726 1.9E-294 T 21-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RAF_RS03380 ed1639f2f1eee3f899f99c5eba842c71 748 SUPERFAMILY SSF46915 238 321 2.43E-15 T 21-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RAF_RS03380 ed1639f2f1eee3f899f99c5eba842c71 748 Gene3D G3DSA:1.10.10.400 238 313 1.6E-18 T 21-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RAF_RS03380 ed1639f2f1eee3f899f99c5eba842c71 748 SMART SM00322 553 618 5.8E-14 T 21-04-2016 IPR004087 K Homology domain GO:0003676 RAF_RS03380 ed1639f2f1eee3f899f99c5eba842c71 748 Pfam PF00013 KH domain 556 614 7.1E-12 T 21-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 RAF_RS03380 ed1639f2f1eee3f899f99c5eba842c71 748 Pfam PF03725 3' exoribonuclease family, domain 2 148 210 2.3E-13 T 21-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 RAF_RS03380 ed1639f2f1eee3f899f99c5eba842c71 748 SUPERFAMILY SSF54791 556 641 1.08E-20 T 21-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 RAF_RS03380 ed1639f2f1eee3f899f99c5eba842c71 748 Gene3D G3DSA:3.30.1370.10 553 620 3.4E-23 T 21-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 RAF_RS03975 6aca436bae695a11de7a51a5a4d8c28d 280 Gene3D G3DSA:1.10.530.10 86 207 4.7E-12 T 21-04-2016 RAF_RS03975 6aca436bae695a11de7a51a5a4d8c28d 280 Pfam PF01464 Transglycosylase SLT domain 86 218 6.3E-11 T 21-04-2016 IPR008258 Transglycosylase SLT domain 1 RAF_RS03975 6aca436bae695a11de7a51a5a4d8c28d 280 SUPERFAMILY SSF53955 52 122 1.2E-16 T 21-04-2016 IPR023346 Lysozyme-like domain RAF_RS03975 6aca436bae695a11de7a51a5a4d8c28d 280 SUPERFAMILY SSF53955 152 207 1.2E-16 T 21-04-2016 IPR023346 Lysozyme-like domain RAF_RS05230 c22e1731e79762a72d68d437da34ccbe 295 SUPERFAMILY SSF109998 22 181 1.08E-24 T 21-04-2016 IPR027304 Trigger factor/SurA domain RAF_RS05230 c22e1731e79762a72d68d437da34ccbe 295 Pfam PF13624 SurA N-terminal domain 4 133 1.0E-14 T 21-04-2016 RAF_RS04130 3522cbc097a0755133c288b78d5fb8c9 245 PANTHER PTHR18895 162 230 9.2E-19 T 21-04-2016 RAF_RS04130 3522cbc097a0755133c288b78d5fb8c9 245 Gene3D G3DSA:3.40.50.150 170 234 1.0E-48 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS04130 3522cbc097a0755133c288b78d5fb8c9 245 Gene3D G3DSA:3.40.50.150 2 121 1.0E-48 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS04130 3522cbc097a0755133c288b78d5fb8c9 245 PANTHER PTHR18895:SF60 2 109 9.2E-19 T 21-04-2016 RAF_RS04130 3522cbc097a0755133c288b78d5fb8c9 245 PANTHER PTHR18895 2 109 9.2E-19 T 21-04-2016 RAF_RS04130 3522cbc097a0755133c288b78d5fb8c9 245 Pfam PF03602 Conserved hypothetical protein 95 2 114 1.7E-21 T 21-04-2016 RAF_RS04130 3522cbc097a0755133c288b78d5fb8c9 245 Pfam PF03602 Conserved hypothetical protein 95 164 232 4.1E-14 T 21-04-2016 RAF_RS04130 3522cbc097a0755133c288b78d5fb8c9 245 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 171 177 - T 21-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RAF_RS04130 3522cbc097a0755133c288b78d5fb8c9 245 PANTHER PTHR18895:SF60 162 230 9.2E-19 T 21-04-2016 RAF_RS04130 3522cbc097a0755133c288b78d5fb8c9 245 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 117 164 1.8E-24 T 21-04-2016 IPR005728 Rickettsial palindromic element RAF_RS04130 3522cbc097a0755133c288b78d5fb8c9 245 SUPERFAMILY SSF53335 2 116 7.56E-34 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS04130 3522cbc097a0755133c288b78d5fb8c9 245 SUPERFAMILY SSF53335 162 231 7.56E-34 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS05935 715bd19fcf984a6af679008103f70ba6 83 Pfam PF12706 Beta-lactamase superfamily domain 9 72 3.7E-8 T 21-04-2016 IPR001279 Metallo-beta-lactamase RAF_RS05935 715bd19fcf984a6af679008103f70ba6 83 PANTHER PTHR15032 3 70 2.6E-12 T 21-04-2016 RAF_RS05935 715bd19fcf984a6af679008103f70ba6 83 Gene3D G3DSA:3.60.15.10 5 77 4.3E-16 T 21-04-2016 IPR001279 Metallo-beta-lactamase RAF_RS05935 715bd19fcf984a6af679008103f70ba6 83 PANTHER PTHR15032:SF4 3 70 2.6E-12 T 21-04-2016 RAF_RS05935 715bd19fcf984a6af679008103f70ba6 83 SUPERFAMILY SSF56281 9 74 1.26E-8 T 21-04-2016 IPR001279 Metallo-beta-lactamase RAF_RS04475 9e02dcaa95f72758d22f525109941c9d 282 Gene3D G3DSA:3.10.50.40 135 254 1.9E-36 T 21-04-2016 RAF_RS04475 9e02dcaa95f72758d22f525109941c9d 282 Pfam PF13616 PPIC-type PPIASE domain 129 233 1.5E-26 T 21-04-2016 RAF_RS04475 9e02dcaa95f72758d22f525109941c9d 282 PANTHER PTHR10657 67 273 4.8E-36 T 21-04-2016 RAF_RS04475 9e02dcaa95f72758d22f525109941c9d 282 SUPERFAMILY SSF54534 107 231 1.11E-28 T 21-04-2016 RAF_RS06705 80306eaf0ae9991bf290382d9254f7df 312 PIRSF PIRSF004930 1 312 2.9E-100 T 21-04-2016 IPR010923 tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 RAF_RS06705 80306eaf0ae9991bf290382d9254f7df 312 Pfam PF03481 Putative GTP-binding controlling metal-binding 189 310 6.5E-17 T 21-04-2016 IPR005145 Putative GTP-binding controlling metal-binding domain RAF_RS06705 80306eaf0ae9991bf290382d9254f7df 312 Pfam PF01300 Telomere recombination 8 187 7.9E-49 T 21-04-2016 IPR006070 YrdC-like domain GO:0003725 RAF_RS06705 80306eaf0ae9991bf290382d9254f7df 312 Gene3D G3DSA:3.90.870.10 2 192 5.0E-62 T 21-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain RAF_RS06705 80306eaf0ae9991bf290382d9254f7df 312 PANTHER PTHR17490 1 310 3.1E-77 T 21-04-2016 RAF_RS06705 80306eaf0ae9991bf290382d9254f7df 312 SUPERFAMILY SSF55821 2 193 1.59E-54 T 21-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain RAF_RS06705 80306eaf0ae9991bf290382d9254f7df 312 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 2 193 1.4E-51 T 21-04-2016 IPR006070 YrdC-like domain GO:0003725 RAF_RS06705 80306eaf0ae9991bf290382d9254f7df 312 PANTHER PTHR17490:SF3 1 310 3.1E-77 T 21-04-2016 RAF_RS03225 e27ddb1411a632f83a6682edf8c32a55 778 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 570 772 3.4E-94 T 21-04-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 RAF_RS03225 e27ddb1411a632f83a6682edf8c32a55 778 Gene3D G3DSA:1.10.8.60 491 584 5.4E-29 T 21-04-2016 RAF_RS03225 e27ddb1411a632f83a6682edf8c32a55 778 Gene3D G3DSA:3.40.50.300 313 489 6.6E-33 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS03225 e27ddb1411a632f83a6682edf8c32a55 778 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 676 684 - T 21-04-2016 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 RAF_RS03225 e27ddb1411a632f83a6682edf8c32a55 778 Hamap MF_01973 Lon protease [lon]. 6 772 66.872 T 21-04-2016 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 RAF_RS03225 e27ddb1411a632f83a6682edf8c32a55 778 PANTHER PTHR10046 6 776 0.0 T 21-04-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 RAF_RS03225 e27ddb1411a632f83a6682edf8c32a55 778 TIGRFAM TIGR00763 lon: endopeptidase La 7 771 2.1E-266 T 21-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 RAF_RS03225 e27ddb1411a632f83a6682edf8c32a55 778 SUPERFAMILY SSF52540 313 586 2.95E-47 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS03225 e27ddb1411a632f83a6682edf8c32a55 778 SUPERFAMILY SSF88697 5 204 3.23E-23 T 21-04-2016 IPR015947 PUA-like domain RAF_RS03225 e27ddb1411a632f83a6682edf8c32a55 778 SMART SM00382 348 492 3.6E-10 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS03225 e27ddb1411a632f83a6682edf8c32a55 778 Gene3D G3DSA:3.30.230.10 589 771 1.0E-71 T 21-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAF_RS03225 e27ddb1411a632f83a6682edf8c32a55 778 PANTHER PTHR10046:SF43 6 776 0.0 T 21-04-2016 RAF_RS03225 e27ddb1411a632f83a6682edf8c32a55 778 SMART SM00464 5 205 5.9E-54 T 21-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 RAF_RS03225 e27ddb1411a632f83a6682edf8c32a55 778 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 6 204 3.1E-28 T 21-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 RAF_RS03225 e27ddb1411a632f83a6682edf8c32a55 778 PIRSF PIRSF001174 1 775 8.3E-295 T 21-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 RAF_RS03225 e27ddb1411a632f83a6682edf8c32a55 778 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 352 489 3.7E-20 T 21-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 RAF_RS03225 e27ddb1411a632f83a6682edf8c32a55 778 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 673 692 6.55E-50 T 21-04-2016 RAF_RS03225 e27ddb1411a632f83a6682edf8c32a55 778 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 595 611 6.55E-50 T 21-04-2016 RAF_RS03225 e27ddb1411a632f83a6682edf8c32a55 778 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 726 744 6.55E-50 T 21-04-2016 RAF_RS03225 e27ddb1411a632f83a6682edf8c32a55 778 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 703 722 6.55E-50 T 21-04-2016 RAF_RS03225 e27ddb1411a632f83a6682edf8c32a55 778 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 356 375 6.55E-50 T 21-04-2016 RAF_RS03225 e27ddb1411a632f83a6682edf8c32a55 778 SUPERFAMILY SSF54211 595 770 3.79E-55 T 21-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RAF_RS04625 91fce9ff55aa1de2d6ad73ccaca4919b 71 SUPERFAMILY SSF52218 1 70 1.0E-5 T 21-04-2016 IPR029039 Flavoprotein-like domain RAF_RS04625 91fce9ff55aa1de2d6ad73ccaca4919b 71 Gene3D G3DSA:3.40.50.360 1 71 7.6E-12 T 21-04-2016 IPR029039 Flavoprotein-like domain RAF_RS03040 9c9225e602823720385d85da726312de 226 Gene3D G3DSA:3.40.1180.10 5 225 3.8E-83 T 21-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 RAF_RS03040 9c9225e602823720385d85da726312de 226 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 5 224 1.5E-78 T 21-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 RAF_RS03040 9c9225e602823720385d85da726312de 226 Pfam PF01255 Putative undecaprenyl diphosphate synthase 10 224 8.1E-76 T 21-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 RAF_RS03040 9c9225e602823720385d85da726312de 226 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 3 225 36.275 T 21-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 RAF_RS03040 9c9225e602823720385d85da726312de 226 SUPERFAMILY SSF64005 5 219 8.24E-76 T 21-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 RAF_RS03040 9c9225e602823720385d85da726312de 226 PANTHER PTHR10291 5 226 1.3E-100 T 21-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 RAF_RS03040 9c9225e602823720385d85da726312de 226 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 170 187 - T 21-04-2016 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 RAF_RS06670 d39670308abd212c1bb2e6fbc8a5e8d3 261 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 82 255 9.1E-74 T 21-04-2016 IPR005273 Uracil-DNA glycosylase, family 4 domain RAF_RS06670 d39670308abd212c1bb2e6fbc8a5e8d3 261 PANTHER PTHR33693:SF1 63 259 3.1E-61 T 21-04-2016 RAF_RS06670 d39670308abd212c1bb2e6fbc8a5e8d3 261 SMART SM00986 95 248 8.9E-39 T 21-04-2016 IPR005122 Uracil-DNA glycosylase-like RAF_RS06670 d39670308abd212c1bb2e6fbc8a5e8d3 261 Pfam PF03167 Uracil DNA glycosylase superfamily 95 247 6.7E-40 T 21-04-2016 IPR005122 Uracil-DNA glycosylase-like RAF_RS06670 d39670308abd212c1bb2e6fbc8a5e8d3 261 SUPERFAMILY SSF52141 70 254 3.92E-56 T 21-04-2016 IPR005122 Uracil-DNA glycosylase-like RAF_RS06670 d39670308abd212c1bb2e6fbc8a5e8d3 261 PANTHER PTHR33693 63 259 3.1E-61 T 21-04-2016 RAF_RS06670 d39670308abd212c1bb2e6fbc8a5e8d3 261 Gene3D G3DSA:3.40.470.10 70 255 8.6E-61 T 21-04-2016 IPR005122 Uracil-DNA glycosylase-like RAF_RS06670 d39670308abd212c1bb2e6fbc8a5e8d3 261 SMART SM00987 95 248 8.9E-39 T 21-04-2016 RAF_RS00450 03b92f77c3435628814623850d7d5bd4 192 Pfam PF02527 rRNA small subunit methyltransferase G 9 180 1.8E-50 T 21-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RAF_RS00450 03b92f77c3435628814623850d7d5bd4 192 PIRSF PIRSF003078 1 188 3.3E-39 T 21-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RAF_RS00450 03b92f77c3435628814623850d7d5bd4 192 PANTHER PTHR31760:SF0 2 166 1.3E-30 T 21-04-2016 RAF_RS00450 03b92f77c3435628814623850d7d5bd4 192 PANTHER PTHR31760 2 166 1.3E-30 T 21-04-2016 RAF_RS00450 03b92f77c3435628814623850d7d5bd4 192 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 1 191 22.014 T 21-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RAF_RS00450 03b92f77c3435628814623850d7d5bd4 192 SUPERFAMILY SSF53335 3 170 7.3E-27 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS00450 03b92f77c3435628814623850d7d5bd4 192 Gene3D G3DSA:3.40.50.150 3 180 6.7E-37 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS00450 03b92f77c3435628814623850d7d5bd4 192 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 12 177 8.5E-46 T 21-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RAF_RS03025 3d1becaa86dabb32c444d01109444f47 203 Pfam PF01612 3'-5' exonuclease 18 168 6.9E-42 T 21-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RAF_RS03025 3d1becaa86dabb32c444d01109444f47 203 SMART SM00474 1 169 1.9E-44 T 21-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RAF_RS03025 3d1becaa86dabb32c444d01109444f47 203 SUPERFAMILY SSF53098 13 191 2.31E-49 T 21-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RAF_RS03025 3d1becaa86dabb32c444d01109444f47 203 PANTHER PTHR12124 17 202 3.1E-62 T 21-04-2016 RAF_RS03025 3d1becaa86dabb32c444d01109444f47 203 Gene3D G3DSA:3.30.420.10 17 181 6.9E-24 T 21-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RAF_RS03025 3d1becaa86dabb32c444d01109444f47 203 PANTHER PTHR12124:SF48 17 202 3.1E-62 T 21-04-2016 RAF_RS06865 f2fd5321b91a27ee4cfedc04cbdd8f33 381 Pfam PF01546 Peptidase family M20/M25/M40 66 378 1.4E-37 T 21-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 RAF_RS06865 f2fd5321b91a27ee4cfedc04cbdd8f33 381 Gene3D G3DSA:3.40.630.10 3 191 1.3E-63 T 21-04-2016 RAF_RS06865 f2fd5321b91a27ee4cfedc04cbdd8f33 381 Gene3D G3DSA:3.40.630.10 324 380 1.3E-63 T 21-04-2016 RAF_RS06865 f2fd5321b91a27ee4cfedc04cbdd8f33 381 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 101 139 - T 21-04-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 RAF_RS06865 f2fd5321b91a27ee4cfedc04cbdd8f33 381 Gene3D G3DSA:3.30.70.360 192 294 2.0E-36 T 21-04-2016 IPR011650 Peptidase M20, dimerisation domain RAF_RS06865 f2fd5321b91a27ee4cfedc04cbdd8f33 381 SUPERFAMILY SSF55031 183 294 2.84E-25 T 21-04-2016 IPR011650 Peptidase M20, dimerisation domain RAF_RS06865 f2fd5321b91a27ee4cfedc04cbdd8f33 381 PANTHER PTHR11014 2 381 7.8E-72 T 21-04-2016 RAF_RS06865 f2fd5321b91a27ee4cfedc04cbdd8f33 381 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 1 381 43.493 T 21-04-2016 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18|UniPathway: UPA00034 RAF_RS06865 f2fd5321b91a27ee4cfedc04cbdd8f33 381 SUPERFAMILY SSF53187 300 380 3.01E-55 T 21-04-2016 RAF_RS06865 f2fd5321b91a27ee4cfedc04cbdd8f33 381 SUPERFAMILY SSF53187 3 182 3.01E-55 T 21-04-2016 RAF_RS06865 f2fd5321b91a27ee4cfedc04cbdd8f33 381 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 3 380 2.4E-160 T 21-04-2016 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18|UniPathway: UPA00034 RAF_RS06865 f2fd5321b91a27ee4cfedc04cbdd8f33 381 Pfam PF07687 Peptidase dimerisation domain 179 286 1.1E-20 T 21-04-2016 IPR011650 Peptidase M20, dimerisation domain RAF_RS06335 68568de327985b43b81b3bfc753ba9a6 159 SMART SM00287 27 90 5.9E-14 T 21-04-2016 IPR003646 SH3-like domain, bacterial-type RAF_RS06335 68568de327985b43b81b3bfc753ba9a6 159 Pfam PF06347 Bacterial SH3 domain 100 151 3.6E-7 T 21-04-2016 IPR010466 Protein of unknown function DUF1058 RAF_RS06335 68568de327985b43b81b3bfc753ba9a6 159 Pfam PF06347 Bacterial SH3 domain 33 89 1.2E-20 T 21-04-2016 IPR010466 Protein of unknown function DUF1058 RAF_RS02870 8832f76a37476e27aec71fe4bbeef434 201 TIGRFAM TIGR00077 lspA: signal peptidase II 17 162 7.4E-35 T 21-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RAF_RS02870 8832f76a37476e27aec71fe4bbeef434 201 PANTHER PTHR33695:SF1 18 173 1.3E-40 T 21-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RAF_RS02870 8832f76a37476e27aec71fe4bbeef434 201 Pfam PF01252 Signal peptidase (SPase) II 18 155 2.0E-34 T 21-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RAF_RS02870 8832f76a37476e27aec71fe4bbeef434 201 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 140 156 3.6E-15 T 21-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RAF_RS02870 8832f76a37476e27aec71fe4bbeef434 201 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 58 66 3.6E-15 T 21-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RAF_RS02870 8832f76a37476e27aec71fe4bbeef434 201 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 104 119 3.6E-15 T 21-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RAF_RS02870 8832f76a37476e27aec71fe4bbeef434 201 PANTHER PTHR33695 18 173 1.3E-40 T 21-04-2016 RAF_RS02870 8832f76a37476e27aec71fe4bbeef434 201 ProSitePatterns PS00855 Signal peptidases II signature. 107 119 - T 21-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RAF_RS02870 8832f76a37476e27aec71fe4bbeef434 201 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 6 165 15.478 T 21-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 RAF_RS05345 b12c2eb09650f0786f15046378a5c930 508 Gene3D G3DSA:3.40.50.620 3 113 3.2E-74 T 21-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS05345 b12c2eb09650f0786f15046378a5c930 508 Gene3D G3DSA:3.40.50.620 224 334 3.2E-74 T 21-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS05345 b12c2eb09650f0786f15046378a5c930 508 Gene3D G3DSA:1.10.730.10 338 507 3.7E-45 T 21-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS05345 b12c2eb09650f0786f15046378a5c930 508 PRINTS PR01041 Methionyl-tRNA synthetase signature 87 98 1.4E-33 T 21-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RAF_RS05345 b12c2eb09650f0786f15046378a5c930 508 PRINTS PR01041 Methionyl-tRNA synthetase signature 222 233 1.4E-33 T 21-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RAF_RS05345 b12c2eb09650f0786f15046378a5c930 508 PRINTS PR01041 Methionyl-tRNA synthetase signature 346 357 1.4E-33 T 21-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RAF_RS05345 b12c2eb09650f0786f15046378a5c930 508 PRINTS PR01041 Methionyl-tRNA synthetase signature 254 269 1.4E-33 T 21-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RAF_RS05345 b12c2eb09650f0786f15046378a5c930 508 PRINTS PR01041 Methionyl-tRNA synthetase signature 39 53 1.4E-33 T 21-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RAF_RS05345 b12c2eb09650f0786f15046378a5c930 508 PRINTS PR01041 Methionyl-tRNA synthetase signature 7 20 1.4E-33 T 21-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RAF_RS05345 b12c2eb09650f0786f15046378a5c930 508 Gene3D G3DSA:2.170.220.10 117 223 4.3E-44 T 21-04-2016 RAF_RS05345 b12c2eb09650f0786f15046378a5c930 508 Hamap MF_01228 Methionine--tRNA ligase [metG]. 1 506 47.895 T 21-04-2016 IPR023457 Methionine-tRNA synthetase, type 2 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RAF_RS05345 b12c2eb09650f0786f15046378a5c930 508 SUPERFAMILY SSF47323 347 506 4.11E-37 T 21-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS05345 b12c2eb09650f0786f15046378a5c930 508 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 151 506 1.7E-104 T 21-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 RAF_RS05345 b12c2eb09650f0786f15046378a5c930 508 SUPERFAMILY SSF52374 2 345 1.18E-108 T 21-04-2016 RAF_RS05345 b12c2eb09650f0786f15046378a5c930 508 PANTHER PTHR11946 2 508 1.7E-243 T 21-04-2016 RAF_RS05345 b12c2eb09650f0786f15046378a5c930 508 Pfam PF08264 Anticodon-binding domain of tRNA 386 474 7.7E-6 T 21-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 RAF_RS05345 b12c2eb09650f0786f15046378a5c930 508 Pfam PF09334 tRNA synthetases class I (M) 5 139 1.1E-43 T 21-04-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS05345 b12c2eb09650f0786f15046378a5c930 508 Pfam PF09334 tRNA synthetases class I (M) 150 358 3.2E-66 T 21-04-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS05345 b12c2eb09650f0786f15046378a5c930 508 PANTHER PTHR11946:SF1 2 508 1.7E-243 T 21-04-2016 RAF_RS00910 ac6c6fbd9de28fbecb3129193cfeb91f 66 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 10 38 - T 21-04-2016 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 RAF_RS00910 ac6c6fbd9de28fbecb3129193cfeb91f 66 Gene3D G3DSA:1.20.5.1030 6 62 2.7E-22 T 21-04-2016 RAF_RS00910 ac6c6fbd9de28fbecb3129193cfeb91f 66 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 9 61 1.8E-18 T 21-04-2016 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 RAF_RS00910 ac6c6fbd9de28fbecb3129193cfeb91f 66 PANTHER PTHR33910:SF1 5 65 4.8E-15 T 21-04-2016 RAF_RS00910 ac6c6fbd9de28fbecb3129193cfeb91f 66 PANTHER PTHR33910 5 65 4.8E-15 T 21-04-2016 RAF_RS00910 ac6c6fbd9de28fbecb3129193cfeb91f 66 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 7 62 6.5E-21 T 21-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 RAF_RS00910 ac6c6fbd9de28fbecb3129193cfeb91f 66 Hamap MF_00422 Protein translocase subunit SecE [secE]. 5 60 12.522 T 21-04-2016 IPR022943 Preprotein translocase subunit SecE RAF_RS02030 3e9fdb6971acb785d05550e30e784bfb 334 SUPERFAMILY SSF52540 14 316 9.32E-44 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02030 3e9fdb6971acb785d05550e30e784bfb 334 Gene3D G3DSA:3.40.50.300 145 322 1.1E-45 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02030 3e9fdb6971acb785d05550e30e784bfb 334 Pfam PF00437 Type II/IV secretion system protein 13 311 4.0E-96 T 21-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 RAF_RS02030 3e9fdb6971acb785d05550e30e784bfb 334 PANTHER PTHR30258:SF12 148 322 2.1E-64 T 21-04-2016 RAF_RS02030 3e9fdb6971acb785d05550e30e784bfb 334 PANTHER PTHR30258:SF12 12 126 2.1E-64 T 21-04-2016 RAF_RS02030 3e9fdb6971acb785d05550e30e784bfb 334 TIGRFAM TIGR02788 VirB11: P-type DNA transfer ATPase VirB11 19 324 1.8E-117 T 21-04-2016 IPR014155 Type IV secretion system protein VirB11 GO:0005737|GO:0006810|GO:0009405 RAF_RS02030 3e9fdb6971acb785d05550e30e784bfb 334 Gene3D G3DSA:3.30.450.90 12 108 4.8E-31 T 21-04-2016 RAF_RS02030 3e9fdb6971acb785d05550e30e784bfb 334 PANTHER PTHR30258 148 322 2.1E-64 T 21-04-2016 RAF_RS02030 3e9fdb6971acb785d05550e30e784bfb 334 PANTHER PTHR30258 12 126 2.1E-64 T 21-04-2016 RAF_RS03050 ab54d9aa85f8c1e06d422e1486e466ca 226 SUPERFAMILY SSF46894 128 225 1.13E-18 T 21-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAF_RS03050 ab54d9aa85f8c1e06d422e1486e466ca 226 PANTHER PTHR26402 6 224 6.2E-68 T 21-04-2016 RAF_RS03050 ab54d9aa85f8c1e06d422e1486e466ca 226 PANTHER PTHR26402:SF292 6 224 6.2E-68 T 21-04-2016 RAF_RS03050 ab54d9aa85f8c1e06d422e1486e466ca 226 SMART SM00862 152 224 1.5E-15 T 21-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAF_RS03050 ab54d9aa85f8c1e06d422e1486e466ca 226 SUPERFAMILY SSF52172 4 131 2.7E-38 T 21-04-2016 IPR011006 CheY-like superfamily RAF_RS03050 ab54d9aa85f8c1e06d422e1486e466ca 226 Pfam PF00072 Response regulator receiver domain 8 117 1.0E-30 T 21-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RAF_RS03050 ab54d9aa85f8c1e06d422e1486e466ca 226 SMART SM00448 6 117 4.5E-40 T 21-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RAF_RS03050 ab54d9aa85f8c1e06d422e1486e466ca 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 224 1.3E-15 T 21-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAF_RS03050 ab54d9aa85f8c1e06d422e1486e466ca 226 Gene3D G3DSA:3.40.50.2300 3 129 5.1E-39 T 21-04-2016 RAF_RS03050 ab54d9aa85f8c1e06d422e1486e466ca 226 Gene3D G3DSA:1.10.10.10 130 224 1.5E-19 T 21-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RAF_RS00050 6d91dbf47fbe8e80447d394dd763d85a 346 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 34 102 2.7E-20 T 21-04-2016 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 UniPathway: UPA00973 RAF_RS00050 6d91dbf47fbe8e80447d394dd763d85a 346 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 6 339 33.954 T 21-04-2016 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 UniPathway: UPA00973 RAF_RS00050 6d91dbf47fbe8e80447d394dd763d85a 346 Gene3D G3DSA:2.160.10.10 123 221 1.7E-23 T 21-04-2016 RAF_RS00050 6d91dbf47fbe8e80447d394dd763d85a 346 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 124 159 1.4E-11 T 21-04-2016 IPR001451 Hexapeptide repeat RAF_RS00050 6d91dbf47fbe8e80447d394dd763d85a 346 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 161 193 0.0015 T 21-04-2016 IPR001451 Hexapeptide repeat RAF_RS00050 6d91dbf47fbe8e80447d394dd763d85a 346 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 236 271 1.5E-6 T 21-04-2016 IPR001451 Hexapeptide repeat RAF_RS00050 6d91dbf47fbe8e80447d394dd763d85a 346 PANTHER PTHR22572:SF117 99 309 5.0E-46 T 21-04-2016 RAF_RS00050 6d91dbf47fbe8e80447d394dd763d85a 346 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 274 301 0.051 T 21-04-2016 IPR001451 Hexapeptide repeat RAF_RS00050 6d91dbf47fbe8e80447d394dd763d85a 346 SUPERFAMILY SSF51161 44 329 7.41E-77 T 21-04-2016 IPR011004 Trimeric LpxA-like RAF_RS00050 6d91dbf47fbe8e80447d394dd763d85a 346 Gene3D G3DSA:2.160.10.10 222 335 4.5E-26 T 21-04-2016 RAF_RS00050 6d91dbf47fbe8e80447d394dd763d85a 346 PANTHER PTHR22572 99 309 5.0E-46 T 21-04-2016 RAF_RS00050 6d91dbf47fbe8e80447d394dd763d85a 346 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 151 179 - T 21-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 RAF_RS00050 6d91dbf47fbe8e80447d394dd763d85a 346 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 133 161 - T 21-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 RAF_RS00050 6d91dbf47fbe8e80447d394dd763d85a 346 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 31 340 1.4E-103 T 21-04-2016 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 UniPathway: UPA00973 RAF_RS04750 e47e2bc1cbbcddb1a6de00efae4fbc33 68 SUPERFAMILY SSF143034 2 62 8.5E-19 T 21-04-2016 RAF_RS04750 e47e2bc1cbbcddb1a6de00efae4fbc33 68 PANTHER PTHR33343 1 65 1.8E-19 T 21-04-2016 RAF_RS04750 e47e2bc1cbbcddb1a6de00efae4fbc33 68 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 21-04-2016 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS04750 e47e2bc1cbbcddb1a6de00efae4fbc33 68 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 16.339 T 21-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RAF_RS04750 e47e2bc1cbbcddb1a6de00efae4fbc33 68 Pfam PF01632 Ribosomal protein L35 2 60 7.1E-20 T 21-04-2016 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS04750 e47e2bc1cbbcddb1a6de00efae4fbc33 68 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 65 5.0E-24 T 21-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RAF_RS04750 e47e2bc1cbbcddb1a6de00efae4fbc33 68 PRINTS PR00064 Ribosomal protein L35 signature 21 35 1.7E-11 T 21-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RAF_RS04750 e47e2bc1cbbcddb1a6de00efae4fbc33 68 PRINTS PR00064 Ribosomal protein L35 signature 3 20 1.7E-11 T 21-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RAF_RS04750 e47e2bc1cbbcddb1a6de00efae4fbc33 68 PRINTS PR00064 Ribosomal protein L35 signature 36 54 1.7E-11 T 21-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RAF_RS03355 68966b79df9d8399019415a0bc2516f6 462 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 236 251 5.63E-22 T 21-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAF_RS03355 68966b79df9d8399019415a0bc2516f6 462 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 173 192 5.63E-22 T 21-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAF_RS03355 68966b79df9d8399019415a0bc2516f6 462 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 207 220 5.63E-22 T 21-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAF_RS03355 68966b79df9d8399019415a0bc2516f6 462 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 95 109 5.63E-22 T 21-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAF_RS03355 68966b79df9d8399019415a0bc2516f6 462 SUPERFAMILY SSF53738 261 367 2.98E-33 T 21-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAF_RS03355 68966b79df9d8399019415a0bc2516f6 462 PANTHER PTHR22573:SF28 1 462 3.9E-135 T 21-04-2016 RAF_RS03355 68966b79df9d8399019415a0bc2516f6 462 SUPERFAMILY SSF53738 158 258 3.45E-27 T 21-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAF_RS03355 68966b79df9d8399019415a0bc2516f6 462 Gene3D G3DSA:3.40.120.10 4 140 3.0E-34 T 21-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAF_RS03355 68966b79df9d8399019415a0bc2516f6 462 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 390 445 8.0E-7 T 21-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAF_RS03355 68966b79df9d8399019415a0bc2516f6 462 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 160 255 5.3E-23 T 21-04-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAF_RS03355 68966b79df9d8399019415a0bc2516f6 462 SUPERFAMILY SSF55957 370 455 1.19E-19 T 21-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAF_RS03355 68966b79df9d8399019415a0bc2516f6 462 Gene3D G3DSA:3.40.120.10 175 252 3.0E-34 T 21-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAF_RS03355 68966b79df9d8399019415a0bc2516f6 462 Gene3D G3DSA:3.30.310.50 372 456 1.7E-22 T 21-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAF_RS03355 68966b79df9d8399019415a0bc2516f6 462 PANTHER PTHR22573 1 462 3.9E-135 T 21-04-2016 RAF_RS03355 68966b79df9d8399019415a0bc2516f6 462 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 261 372 4.3E-25 T 21-04-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAF_RS03355 68966b79df9d8399019415a0bc2516f6 462 SUPERFAMILY SSF53738 5 137 1.61E-35 T 21-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAF_RS03355 68966b79df9d8399019415a0bc2516f6 462 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 6 134 2.7E-33 T 21-04-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAF_RS03355 68966b79df9d8399019415a0bc2516f6 462 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 96 105 - T 21-04-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAF_RS03355 68966b79df9d8399019415a0bc2516f6 462 Gene3D G3DSA:3.40.120.10 255 370 3.2E-41 T 21-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RAF_RS03375 9697ef3e7c3fc3a0490c008389427027 319 Gene3D G3DSA:3.10.580.10 195 315 1.7E-36 T 21-04-2016 RAF_RS03375 9697ef3e7c3fc3a0490c008389427027 319 SUPERFAMILY SSF53697 10 318 1.38E-59 T 21-04-2016 RAF_RS03375 9697ef3e7c3fc3a0490c008389427027 319 Pfam PF00571 CBS domain 265 315 1.2E-10 T 21-04-2016 IPR000644 CBS domain RAF_RS03375 9697ef3e7c3fc3a0490c008389427027 319 Pfam PF00571 CBS domain 202 256 4.9E-7 T 21-04-2016 IPR000644 CBS domain RAF_RS03375 9697ef3e7c3fc3a0490c008389427027 319 PANTHER PTHR11911 176 316 1.1E-33 T 21-04-2016 RAF_RS03375 9697ef3e7c3fc3a0490c008389427027 319 SMART SM00116 271 318 0.028 T 21-04-2016 IPR000644 CBS domain RAF_RS03375 9697ef3e7c3fc3a0490c008389427027 319 SMART SM00116 208 256 2.1E-4 T 21-04-2016 IPR000644 CBS domain RAF_RS03375 9697ef3e7c3fc3a0490c008389427027 319 PIRSF PIRSF004692 1 319 4.4E-122 T 21-04-2016 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 RAF_RS03375 9697ef3e7c3fc3a0490c008389427027 319 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 45 309 2.7E-84 T 21-04-2016 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 RAF_RS03375 9697ef3e7c3fc3a0490c008389427027 319 Gene3D G3DSA:3.40.50.10490 10 191 2.4E-43 T 21-04-2016 RAF_RS03375 9697ef3e7c3fc3a0490c008389427027 319 Pfam PF01380 SIS domain 41 169 4.8E-25 T 21-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 RAF_RS03060 746f8ac647d7c607e3a30c1598537dbd 294 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 4 289 55.159 T 21-04-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RAF_RS03060 746f8ac647d7c607e3a30c1598537dbd 294 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 135 165 - T 21-04-2016 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RAF_RS03060 746f8ac647d7c607e3a30c1598537dbd 294 PIRSF PIRSF001365 1 293 3.6E-82 T 21-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RAF_RS03060 746f8ac647d7c607e3a30c1598537dbd 294 Pfam PF00701 Dihydrodipicolinate synthetase family 5 288 7.0E-78 T 21-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RAF_RS03060 746f8ac647d7c607e3a30c1598537dbd 294 SUPERFAMILY SSF51569 4 290 8.58E-89 T 21-04-2016 RAF_RS03060 746f8ac647d7c607e3a30c1598537dbd 294 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 40 57 - T 21-04-2016 IPR020624 Schiff base-forming aldolase, conserved site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RAF_RS03060 746f8ac647d7c607e3a30c1598537dbd 294 PANTHER PTHR12128 1 292 4.4E-112 T 21-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RAF_RS03060 746f8ac647d7c607e3a30c1598537dbd 294 SMART SM01130 4 291 1.2E-108 T 21-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RAF_RS03060 746f8ac647d7c607e3a30c1598537dbd 294 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 8 289 2.9E-109 T 21-04-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 RAF_RS03060 746f8ac647d7c607e3a30c1598537dbd 294 Gene3D G3DSA:3.20.20.70 2 292 4.0E-99 T 21-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RAF_RS03060 746f8ac647d7c607e3a30c1598537dbd 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 37 58 7.2E-22 T 21-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RAF_RS03060 746f8ac647d7c607e3a30c1598537dbd 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 130 147 7.2E-22 T 21-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RAF_RS03060 746f8ac647d7c607e3a30c1598537dbd 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 73 91 7.2E-22 T 21-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RAF_RS03060 746f8ac647d7c607e3a30c1598537dbd 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 105 121 7.2E-22 T 21-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 RAF_RS03060 746f8ac647d7c607e3a30c1598537dbd 294 PANTHER PTHR12128:SF34 1 292 4.4E-112 T 21-04-2016 RAF_RS00780 93094ba4c3533c5c712ed5891c918e2b 234 PANTHER PTHR32125:SF1 8 234 4.6E-71 T 21-04-2016 RAF_RS00780 93094ba4c3533c5c712ed5891c918e2b 234 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 26 228 6.7E-48 T 21-04-2016 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RAF_RS00780 93094ba4c3533c5c712ed5891c918e2b 234 Gene3D G3DSA:3.40.1280.10 4 162 1.3E-67 T 21-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RAF_RS00780 93094ba4c3533c5c712ed5891c918e2b 234 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 234 88.685 T 21-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RAF_RS00780 93094ba4c3533c5c712ed5891c918e2b 234 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 6 233 8.9E-72 T 21-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RAF_RS00780 93094ba4c3533c5c712ed5891c918e2b 234 PIRSF PIRSF000386 4 234 8.3E-77 T 21-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RAF_RS00780 93094ba4c3533c5c712ed5891c918e2b 234 SUPERFAMILY SSF75217 4 233 3.47E-82 T 21-04-2016 IPR029028 Alpha/beta knot methyltransferases RAF_RS00780 93094ba4c3533c5c712ed5891c918e2b 234 PANTHER PTHR32125 8 234 4.6E-71 T 21-04-2016 RAF_RS00780 93094ba4c3533c5c712ed5891c918e2b 234 Gene3D G3DSA:1.10.1270.20 170 233 5.4E-23 T 21-04-2016 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RAF_RS05040 d1caa79ab23159f6fece98df32368c12 153 PANTHER PTHR12934 1 151 2.2E-46 T 21-04-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 RAF_RS05040 d1caa79ab23159f6fece98df32368c12 153 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 152 1.8E-48 T 21-04-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 RAF_RS05040 d1caa79ab23159f6fece98df32368c12 153 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 27 152 2.8E-28 T 21-04-2016 IPR021131 Ribosomal protein L18e/L15P RAF_RS05040 d1caa79ab23159f6fece98df32368c12 153 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 153 17.913 T 21-04-2016 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 RAF_RS05040 d1caa79ab23159f6fece98df32368c12 153 SUPERFAMILY SSF52080 4 152 3.27E-34 T 21-04-2016 IPR021131 Ribosomal protein L18e/L15P RAF_RS05040 d1caa79ab23159f6fece98df32368c12 153 Gene3D G3DSA:3.100.10.10 32 152 2.7E-18 T 21-04-2016 RAF_RS02865 db04a2a01d85575811bc062e09372f6e 454 PANTHER PTHR21666 288 410 3.0E-42 T 21-04-2016 RAF_RS02865 db04a2a01d85575811bc062e09372f6e 454 Gene3D G3DSA:2.70.70.10 265 410 2.4E-46 T 21-04-2016 RAF_RS02865 db04a2a01d85575811bc062e09372f6e 454 Pfam PF01551 Peptidase family M23 311 407 4.6E-31 T 21-04-2016 IPR016047 Peptidase M23 RAF_RS02865 db04a2a01d85575811bc062e09372f6e 454 SUPERFAMILY SSF51261 156 409 1.1E-65 T 21-04-2016 IPR011055 Duplicated hybrid motif RAF_RS02830 dd18b9878b1f345689dea8d8ef0549d8 838 Pfam PF12705 PD-(D/E)XK nuclease superfamily 558 743 1.3E-22 T 21-04-2016 RAF_RS02830 dd18b9878b1f345689dea8d8ef0549d8 838 SUPERFAMILY SSF52980 560 721 2.25E-6 T 21-04-2016 IPR011335 Restriction endonuclease type II-like RAF_RS02830 dd18b9878b1f345689dea8d8ef0549d8 838 TIGRFAM TIGR03777 RPE4: rickettsial palindromic element RPE4 domain 523 545 2.1E-9 T 21-04-2016 IPR022439 Rickettsia palindromic element RPE4 RAF_RS02830 dd18b9878b1f345689dea8d8ef0549d8 838 SUPERFAMILY SSF52540 209 519 4.78E-11 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04840 4e48f0d2b3340a6625c02f6a50aaaac6 1092 SUPERFAMILY SSF50677 210 405 2.2E-45 T 21-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RAF_RS04840 4e48f0d2b3340a6625c02f6a50aaaac6 1092 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 11 902 9.8E-257 T 21-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RAF_RS04840 4e48f0d2b3340a6625c02f6a50aaaac6 1092 SUPERFAMILY SSF52374 12 203 1.45E-127 T 21-04-2016 RAF_RS04840 4e48f0d2b3340a6625c02f6a50aaaac6 1092 SUPERFAMILY SSF52374 405 644 1.45E-127 T 21-04-2016 RAF_RS04840 4e48f0d2b3340a6625c02f6a50aaaac6 1092 Hamap MF_02003 Isoleucine--tRNA ligase [ileS]. 8 1086 13.816 T 21-04-2016 IPR023586 Isoleucine-tRNA ligase, type 2 GO:0004822 KEGG: 00970+6.1.1.5 RAF_RS04840 4e48f0d2b3340a6625c02f6a50aaaac6 1092 PANTHER PTHR11946 1 257 0.0 T 21-04-2016 RAF_RS04840 4e48f0d2b3340a6625c02f6a50aaaac6 1092 PANTHER PTHR11946 283 797 0.0 T 21-04-2016 RAF_RS04840 4e48f0d2b3340a6625c02f6a50aaaac6 1092 PANTHER PTHR11946 990 1019 0.0 T 21-04-2016 RAF_RS04840 4e48f0d2b3340a6625c02f6a50aaaac6 1092 PANTHER PTHR11946 839 960 0.0 T 21-04-2016 RAF_RS04840 4e48f0d2b3340a6625c02f6a50aaaac6 1092 SUPERFAMILY SSF47323 840 948 1.14E-42 T 21-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS04840 4e48f0d2b3340a6625c02f6a50aaaac6 1092 SUPERFAMILY SSF47323 669 797 1.14E-42 T 21-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS04840 4e48f0d2b3340a6625c02f6a50aaaac6 1092 Gene3D G3DSA:1.10.730.10 661 797 1.4E-48 T 21-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS04840 4e48f0d2b3340a6625c02f6a50aaaac6 1092 Gene3D G3DSA:1.10.730.10 836 881 1.4E-48 T 21-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS04840 4e48f0d2b3340a6625c02f6a50aaaac6 1092 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 53 64 - T 21-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS04840 4e48f0d2b3340a6625c02f6a50aaaac6 1092 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 46 57 4.68E-30 T 21-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RAF_RS04840 4e48f0d2b3340a6625c02f6a50aaaac6 1092 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 403 418 4.68E-30 T 21-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RAF_RS04840 4e48f0d2b3340a6625c02f6a50aaaac6 1092 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 572 581 4.68E-30 T 21-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RAF_RS04840 4e48f0d2b3340a6625c02f6a50aaaac6 1092 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 532 545 4.68E-30 T 21-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RAF_RS04840 4e48f0d2b3340a6625c02f6a50aaaac6 1092 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 236 259 4.68E-30 T 21-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 RAF_RS04840 4e48f0d2b3340a6625c02f6a50aaaac6 1092 Pfam PF08264 Anticodon-binding domain of tRNA 700 886 1.1E-17 T 21-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 RAF_RS04840 4e48f0d2b3340a6625c02f6a50aaaac6 1092 Gene3D G3DSA:3.40.50.620 409 646 5.0E-145 T 21-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS04840 4e48f0d2b3340a6625c02f6a50aaaac6 1092 Gene3D G3DSA:3.40.50.620 10 199 5.0E-145 T 21-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS04840 4e48f0d2b3340a6625c02f6a50aaaac6 1092 Gene3D G3DSA:3.90.740.10 237 408 1.6E-54 T 21-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RAF_RS04840 4e48f0d2b3340a6625c02f6a50aaaac6 1092 PANTHER PTHR11946:SF73 1 257 0.0 T 21-04-2016 RAF_RS04840 4e48f0d2b3340a6625c02f6a50aaaac6 1092 PANTHER PTHR11946:SF73 283 797 0.0 T 21-04-2016 RAF_RS04840 4e48f0d2b3340a6625c02f6a50aaaac6 1092 PANTHER PTHR11946:SF73 990 1019 0.0 T 21-04-2016 RAF_RS04840 4e48f0d2b3340a6625c02f6a50aaaac6 1092 PANTHER PTHR11946:SF73 839 960 0.0 T 21-04-2016 RAF_RS04840 4e48f0d2b3340a6625c02f6a50aaaac6 1092 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 23 647 1.3E-186 T 21-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS05560 276336377034db4931cdb90c73bcd6c8 156 SUPERFAMILY SSF52833 3 154 1.44E-49 T 21-04-2016 IPR012336 Thioredoxin-like fold RAF_RS05560 276336377034db4931cdb90c73bcd6c8 156 PIRSF PIRSF000239 1 156 9.4E-27 T 21-04-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15 RAF_RS05560 276336377034db4931cdb90c73bcd6c8 156 Gene3D G3DSA:3.40.30.10 2 152 1.7E-46 T 21-04-2016 IPR012336 Thioredoxin-like fold RAF_RS05560 276336377034db4931cdb90c73bcd6c8 156 PANTHER PTHR10681 3 151 1.3E-41 T 21-04-2016 RAF_RS05560 276336377034db4931cdb90c73bcd6c8 156 Pfam PF00578 AhpC/TSA family 6 133 1.8E-35 T 21-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 RAF_RS06805 1711a4e388313025a426d6f7d4c05270 107 Pfam PF02575 YbaB/EbfC DNA-binding family 8 97 1.7E-31 T 21-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RAF_RS06805 1711a4e388313025a426d6f7d4c05270 107 PIRSF PIRSF004555 1 107 1.5E-37 T 21-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RAF_RS06805 1711a4e388313025a426d6f7d4c05270 107 PANTHER PTHR33449:SF1 1 107 5.1E-36 T 21-04-2016 RAF_RS06805 1711a4e388313025a426d6f7d4c05270 107 PANTHER PTHR33449 1 107 5.1E-36 T 21-04-2016 RAF_RS06805 1711a4e388313025a426d6f7d4c05270 107 Gene3D G3DSA:3.30.1310.10 1 107 2.3E-41 T 21-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RAF_RS06805 1711a4e388313025a426d6f7d4c05270 107 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 3 102 5.2E-28 T 21-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RAF_RS06805 1711a4e388313025a426d6f7d4c05270 107 SUPERFAMILY SSF82607 8 101 1.31E-30 T 21-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RAF_RS06805 1711a4e388313025a426d6f7d4c05270 107 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 2 96 21.119 T 21-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family RAF_RS06525 180c5c5c86e6d4adf2ca7f3632de8abf 245 SUPERFAMILY SSF56925 44 243 3.66E-19 T 21-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RAF_RS06525 180c5c5c86e6d4adf2ca7f3632de8abf 245 Gene3D G3DSA:2.40.160.20 43 244 1.9E-23 T 21-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RAF_RS06525 180c5c5c86e6d4adf2ca7f3632de8abf 245 Pfam PF13505 Outer membrane protein beta-barrel domain 40 243 6.1E-11 T 21-04-2016 IPR027385 Outer membrane protein beta-barrel RAF_RS05905 a2cd004dc391284e3903e5d8c10befe7 199 SUPERFAMILY SSF101307 138 189 1.83E-34 T 21-04-2016 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 RAF_RS05905 a2cd004dc391284e3903e5d8c10befe7 199 SUPERFAMILY SSF101307 3 110 1.83E-34 T 21-04-2016 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 RAF_RS05905 a2cd004dc391284e3903e5d8c10befe7 199 Gene3D G3DSA:1.10.3760.10 148 186 8.3E-4 T 21-04-2016 IPR027416 YutG-like domain RAF_RS05905 a2cd004dc391284e3903e5d8c10befe7 199 PANTHER PTHR36305 131 196 5.0E-25 T 21-04-2016 RAF_RS05905 a2cd004dc391284e3903e5d8c10befe7 199 PANTHER PTHR36305 70 114 5.0E-25 T 21-04-2016 RAF_RS05905 a2cd004dc391284e3903e5d8c10befe7 199 PANTHER PTHR36305 7 47 5.0E-25 T 21-04-2016 RAF_RS05905 a2cd004dc391284e3903e5d8c10befe7 199 Pfam PF04608 Phosphatidylglycerophosphatase A 9 190 2.6E-42 T 21-04-2016 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 RAF_RS05905 a2cd004dc391284e3903e5d8c10befe7 199 PIRSF PIRSF006162 1 198 2.6E-58 T 21-04-2016 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 RAF_RS05270 7bd5ab4ea06332d6910c6dc10333d581 447 Gene3D G3DSA:3.40.50.300 6 166 1.3E-42 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05270 7bd5ab4ea06332d6910c6dc10333d581 447 Gene3D G3DSA:3.40.50.300 178 363 6.4E-46 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05270 7bd5ab4ea06332d6910c6dc10333d581 447 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 179 347 4.7E-22 T 21-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RAF_RS05270 7bd5ab4ea06332d6910c6dc10333d581 447 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 157 1.3E-26 T 21-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RAF_RS05270 7bd5ab4ea06332d6910c6dc10333d581 447 PIRSF PIRSF006485 2 447 6.8E-160 T 21-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 RAF_RS05270 7bd5ab4ea06332d6910c6dc10333d581 447 PANTHER PTHR11649:SF68 1 440 1.3E-215 T 21-04-2016 RAF_RS05270 7bd5ab4ea06332d6910c6dc10333d581 447 SUPERFAMILY SSF52540 6 166 1.59E-44 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05270 7bd5ab4ea06332d6910c6dc10333d581 447 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 359 438 3.4E-29 T 21-04-2016 IPR032859 GTPase Der, C-terminal KH-domain-like RAF_RS05270 7bd5ab4ea06332d6910c6dc10333d581 447 PANTHER PTHR11649 1 440 1.3E-215 T 21-04-2016 RAF_RS05270 7bd5ab4ea06332d6910c6dc10333d581 447 Hamap MF_00195 GTPase Der [der]. 3 443 35.155 T 21-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 RAF_RS05270 7bd5ab4ea06332d6910c6dc10333d581 447 Gene3D G3DSA:3.30.300.20 364 441 9.1E-31 T 21-04-2016 IPR015946 K homology domain-like, alpha/beta RAF_RS05270 7bd5ab4ea06332d6910c6dc10333d581 447 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 5 438 8.5E-157 T 21-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 RAF_RS05270 7bd5ab4ea06332d6910c6dc10333d581 447 SUPERFAMILY SSF52540 137 446 9.42E-56 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05270 7bd5ab4ea06332d6910c6dc10333d581 447 Pfam PF01926 50S ribosome-binding GTPase 182 299 7.7E-20 T 21-04-2016 IPR006073 GTP binding domain GO:0005525 RAF_RS05270 7bd5ab4ea06332d6910c6dc10333d581 447 Pfam PF01926 50S ribosome-binding GTPase 6 120 1.5E-24 T 21-04-2016 IPR006073 GTP binding domain GO:0005525 RAF_RS02890 150ea245a8d35d599d561b06570a3862 376 PANTHER PTHR21015:SF22 1 359 1.0E-75 T 21-04-2016 RAF_RS02890 150ea245a8d35d599d561b06570a3862 376 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 1 363 3.7E-105 T 21-04-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RAF_RS02890 150ea245a8d35d599d561b06570a3862 376 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 201 366 7.3E-44 T 21-04-2016 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RAF_RS02890 150ea245a8d35d599d561b06570a3862 376 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 4 376 28.285 T 21-04-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RAF_RS02890 150ea245a8d35d599d561b06570a3862 376 Gene3D G3DSA:3.40.50.2000 3 45 1.7E-6 T 21-04-2016 RAF_RS02890 150ea245a8d35d599d561b06570a3862 376 SUPERFAMILY SSF53756 2 361 1.19E-85 T 21-04-2016 RAF_RS02890 150ea245a8d35d599d561b06570a3862 376 Gene3D G3DSA:3.40.50.2000 150 356 1.7E-54 T 21-04-2016 RAF_RS02890 150ea245a8d35d599d561b06570a3862 376 TIGRFAM TIGR03777 RPE4: rickettsial palindromic element RPE4 domain 171 197 1.2E-11 T 21-04-2016 IPR022439 Rickettsia palindromic element RPE4 RAF_RS02890 150ea245a8d35d599d561b06570a3862 376 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 4 136 1.9E-34 T 21-04-2016 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RAF_RS02890 150ea245a8d35d599d561b06570a3862 376 PANTHER PTHR21015 1 359 1.0E-75 T 21-04-2016 RAF_RS01585 2ba5585862b37fe49e52da8bb219f18f 453 SUPERFAMILY SSF56954 1 424 1.7E-67 T 21-04-2016 RAF_RS01585 2ba5585862b37fe49e52da8bb219f18f 453 Gene3D G3DSA:1.20.1600.10 19 425 1.7E-64 T 21-04-2016 RAF_RS01585 2ba5585862b37fe49e52da8bb219f18f 453 PANTHER PTHR30026 1 448 3.8E-58 T 21-04-2016 RAF_RS01585 2ba5585862b37fe49e52da8bb219f18f 453 Pfam PF02321 Outer membrane efflux protein 234 422 1.2E-27 T 21-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RAF_RS01585 2ba5585862b37fe49e52da8bb219f18f 453 Pfam PF02321 Outer membrane efflux protein 22 213 1.6E-18 T 21-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RAF_RS01585 2ba5585862b37fe49e52da8bb219f18f 453 PANTHER PTHR30026:SF3 1 448 3.8E-58 T 21-04-2016 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 RAF_RS00375 ace69ef7690f5110424d898005e47100 406 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 329 376 5.4E-26 T 21-04-2016 IPR005728 Rickettsial palindromic element RAF_RS00375 ace69ef7690f5110424d898005e47100 406 SUPERFAMILY SSF53335 6 338 1.32E-89 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS00375 ace69ef7690f5110424d898005e47100 406 PANTHER PTHR12049:SF7 11 333 1.8E-72 T 21-04-2016 RAF_RS00375 ace69ef7690f5110424d898005e47100 406 PANTHER PTHR12049 11 333 1.8E-72 T 21-04-2016 IPR003788 Putative S-adenosyl-L-methionine-dependent methyltransferase MidA RAF_RS00375 ace69ef7690f5110424d898005e47100 406 Pfam PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase 61 300 3.7E-54 T 21-04-2016 IPR003788 Putative S-adenosyl-L-methionine-dependent methyltransferase MidA RAF_RS00970 17f92d3c0b96f411c95b9c5e6403d76c 602 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 5 590 1.1E-190 T 21-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 RAF_RS00970 17f92d3c0b96f411c95b9c5e6403d76c 602 Pfam PF00152 tRNA synthetases class II (D, K and N) 123 565 4.0E-91 T 21-04-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS00970 17f92d3c0b96f411c95b9c5e6403d76c 602 Hamap MF_00044 Aspartate--tRNA(Asp) ligase [aspS]. 4 571 33.754 T 21-04-2016 RAF_RS00970 17f92d3c0b96f411c95b9c5e6403d76c 602 Pfam PF02938 GAD domain 315 407 5.8E-21 T 21-04-2016 IPR029351 GAD domain RAF_RS00970 17f92d3c0b96f411c95b9c5e6403d76c 602 PANTHER PTHR22594:SF5 373 579 2.4E-205 T 21-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 RAF_RS00970 17f92d3c0b96f411c95b9c5e6403d76c 602 PANTHER PTHR22594:SF5 4 304 2.4E-205 T 21-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 RAF_RS00970 17f92d3c0b96f411c95b9c5e6403d76c 602 SUPERFAMILY SSF50249 4 108 3.05E-30 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS00970 17f92d3c0b96f411c95b9c5e6403d76c 602 Gene3D G3DSA:3.30.930.10 137 283 5.4E-99 T 21-04-2016 RAF_RS00970 17f92d3c0b96f411c95b9c5e6403d76c 602 Gene3D G3DSA:3.30.930.10 417 591 5.4E-99 T 21-04-2016 RAF_RS00970 17f92d3c0b96f411c95b9c5e6403d76c 602 SUPERFAMILY SSF55681 428 590 7.28E-95 T 21-04-2016 RAF_RS00970 17f92d3c0b96f411c95b9c5e6403d76c 602 SUPERFAMILY SSF55681 114 299 7.28E-95 T 21-04-2016 RAF_RS00970 17f92d3c0b96f411c95b9c5e6403d76c 602 SUPERFAMILY SSF55261 296 422 9.48E-36 T 21-04-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 RAF_RS00970 17f92d3c0b96f411c95b9c5e6403d76c 602 Gene3D G3DSA:3.30.1360.30 284 416 9.4E-44 T 21-04-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 RAF_RS00970 17f92d3c0b96f411c95b9c5e6403d76c 602 Gene3D G3DSA:2.40.50.140 4 110 4.7E-34 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS00970 17f92d3c0b96f411c95b9c5e6403d76c 602 PANTHER PTHR22594 373 579 2.4E-205 T 21-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS00970 17f92d3c0b96f411c95b9c5e6403d76c 602 PANTHER PTHR22594 4 304 2.4E-205 T 21-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS00970 17f92d3c0b96f411c95b9c5e6403d76c 602 Pfam PF01336 OB-fold nucleic acid binding domain 21 97 3.1E-13 T 21-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 RAF_RS00970 17f92d3c0b96f411c95b9c5e6403d76c 602 PRINTS PR01042 Aspartyl-tRNA synthetase signature 482 498 2.1E-21 T 21-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS00970 17f92d3c0b96f411c95b9c5e6403d76c 602 PRINTS PR01042 Aspartyl-tRNA synthetase signature 195 207 2.1E-21 T 21-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS00970 17f92d3c0b96f411c95b9c5e6403d76c 602 PRINTS PR01042 Aspartyl-tRNA synthetase signature 526 540 2.1E-21 T 21-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS00970 17f92d3c0b96f411c95b9c5e6403d76c 602 PRINTS PR01042 Aspartyl-tRNA synthetase signature 212 225 2.1E-21 T 21-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS00340 b0a199049d10863c321ac125f4ff8e91 95 SUPERFAMILY SSF46911 18 93 1.14E-25 T 21-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00340 b0a199049d10863c321ac125f4ff8e91 95 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 41 91 8.0E-23 T 21-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00340 b0a199049d10863c321ac125f4ff8e91 95 PRINTS PR00974 Ribosomal protein S18 family signature 58 65 1.7E-13 T 21-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00340 b0a199049d10863c321ac125f4ff8e91 95 PRINTS PR00974 Ribosomal protein S18 family signature 66 80 1.7E-13 T 21-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00340 b0a199049d10863c321ac125f4ff8e91 95 PRINTS PR00974 Ribosomal protein S18 family signature 80 90 1.7E-13 T 21-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00340 b0a199049d10863c321ac125f4ff8e91 95 PRINTS PR00974 Ribosomal protein S18 family signature 48 58 1.7E-13 T 21-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00340 b0a199049d10863c321ac125f4ff8e91 95 PANTHER PTHR13479 20 92 3.4E-22 T 21-04-2016 RAF_RS00340 b0a199049d10863c321ac125f4ff8e91 95 TIGRFAM TIGR00165 S18: ribosomal protein bS18 24 91 3.5E-22 T 21-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00340 b0a199049d10863c321ac125f4ff8e91 95 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 22 93 19.566 T 21-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00340 b0a199049d10863c321ac125f4ff8e91 95 Gene3D G3DSA:4.10.640.10 18 92 1.3E-26 T 21-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00340 b0a199049d10863c321ac125f4ff8e91 95 Pfam PF01084 Ribosomal protein S18 40 88 3.1E-22 T 21-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00340 b0a199049d10863c321ac125f4ff8e91 95 ProSitePatterns PS00057 Ribosomal protein S18 signature. 41 64 - T 21-04-2016 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS01420 9c91c0c80dcdce4bdc18adbbcebd358e 61 Pfam PF04588 Hypoxia induced protein conserved region 4 52 5.3E-9 T 21-04-2016 IPR007667 Hypoxia induced protein, domain RAF_RS05830 b6984e8e7eb650ed1ddfd15c059f5ce3 420 Gene3D G3DSA:3.40.640.10 37 283 2.3E-103 T 21-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RAF_RS05830 b6984e8e7eb650ed1ddfd15c059f5ce3 420 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 420 52.426 T 21-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RAF_RS05830 b6984e8e7eb650ed1ddfd15c059f5ce3 420 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 222 238 - T 21-04-2016 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0004372|GO:0006544|GO:0006563|GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RAF_RS05830 b6984e8e7eb650ed1ddfd15c059f5ce3 420 SUPERFAMILY SSF53383 3 419 1.06E-177 T 21-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RAF_RS05830 b6984e8e7eb650ed1ddfd15c059f5ce3 420 Gene3D G3DSA:3.90.1150.10 284 420 4.3E-54 T 21-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RAF_RS05830 b6984e8e7eb650ed1ddfd15c059f5ce3 420 Pfam PF00464 Serine hydroxymethyltransferase 8 385 2.1E-171 T 21-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RAF_RS05830 b6984e8e7eb650ed1ddfd15c059f5ce3 420 PIRSF PIRSF000412 1 420 8.7E-167 T 21-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RAF_RS05830 b6984e8e7eb650ed1ddfd15c059f5ce3 420 PANTHER PTHR11680 3 420 5.3E-250 T 21-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 RAF_RS05980 bb17a1dffb0a17e19a03191dc677f236 445 Gene3D G3DSA:3.40.50.300 286 382 2.9E-7 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05980 bb17a1dffb0a17e19a03191dc677f236 445 Pfam PF12631 MnmE helical domain 122 442 1.5E-49 T 21-04-2016 IPR025867 MnmE, helical domain RAF_RS05980 bb17a1dffb0a17e19a03191dc677f236 445 SUPERFAMILY SSF116878 120 219 5.36E-46 T 21-04-2016 RAF_RS05980 bb17a1dffb0a17e19a03191dc677f236 445 SUPERFAMILY SSF116878 374 445 5.36E-46 T 21-04-2016 RAF_RS05980 bb17a1dffb0a17e19a03191dc677f236 445 PANTHER PTHR11649:SF56 5 445 8.9E-156 T 21-04-2016 RAF_RS05980 bb17a1dffb0a17e19a03191dc677f236 445 Gene3D G3DSA:3.30.1360.120 2 120 3.7E-44 T 21-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RAF_RS05980 bb17a1dffb0a17e19a03191dc677f236 445 Pfam PF01926 50S ribosome-binding GTPase 218 330 3.5E-22 T 21-04-2016 IPR006073 GTP binding domain GO:0005525 RAF_RS05980 bb17a1dffb0a17e19a03191dc677f236 445 Gene3D G3DSA:3.40.50.300 210 246 4.5E-7 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05980 bb17a1dffb0a17e19a03191dc677f236 445 PANTHER PTHR11649 5 445 8.9E-156 T 21-04-2016 RAF_RS05980 bb17a1dffb0a17e19a03191dc677f236 445 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 216 366 5.6E-20 T 21-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RAF_RS05980 bb17a1dffb0a17e19a03191dc677f236 445 Pfam PF10396 GTP-binding protein TrmE N-terminus 3 119 5.3E-36 T 21-04-2016 IPR018948 GTP-binding protein TrmE, N-terminal RAF_RS05980 bb17a1dffb0a17e19a03191dc677f236 445 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 10 445 2.9E-96 T 21-04-2016 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 RAF_RS05980 bb17a1dffb0a17e19a03191dc677f236 445 SUPERFAMILY SSF52540 187 356 1.06E-40 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05980 bb17a1dffb0a17e19a03191dc677f236 445 SUPERFAMILY SSF52540 71 151 1.06E-40 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05980 bb17a1dffb0a17e19a03191dc677f236 445 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 2 445 30.747 T 21-04-2016 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 RAF_RS05980 bb17a1dffb0a17e19a03191dc677f236 445 Gene3D G3DSA:1.20.120.430 247 270 1.9E-54 T 21-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 RAF_RS05980 bb17a1dffb0a17e19a03191dc677f236 445 Gene3D G3DSA:1.20.120.430 121 181 1.9E-54 T 21-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 RAF_RS05980 bb17a1dffb0a17e19a03191dc677f236 445 Gene3D G3DSA:1.20.120.430 383 445 1.9E-54 T 21-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 RAF_RS06190 532e4e1c036d27d6136748ddc9bfff27 132 PIRSF PIRSF039032 1 116 1.0E-28 T 21-04-2016 IPR009387 Toxin HigB-2 RAF_RS06190 532e4e1c036d27d6136748ddc9bfff27 132 Pfam PF06296 RelE toxin of RelE / RelB toxin-antitoxin system 13 119 5.8E-8 T 21-04-2016 IPR009387 Toxin HigB-2 RAF_RS03150 75d5a67393703f3e0eed89503615890a 560 SMART SM00849 25 220 4.4E-22 T 21-04-2016 IPR001279 Metallo-beta-lactamase RAF_RS03150 75d5a67393703f3e0eed89503615890a 560 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 357 413 5.4E-11 T 21-04-2016 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain RAF_RS03150 75d5a67393703f3e0eed89503615890a 560 PANTHER PTHR11203:SF22 4 557 3.8E-158 T 21-04-2016 IPR004613 Ribonuclease J GO:0003723|GO:0046872 RAF_RS03150 75d5a67393703f3e0eed89503615890a 560 SUPERFAMILY SSF56281 15 424 3.41E-81 T 21-04-2016 IPR001279 Metallo-beta-lactamase RAF_RS03150 75d5a67393703f3e0eed89503615890a 560 Gene3D G3DSA:3.60.15.10 10 261 2.0E-67 T 21-04-2016 IPR001279 Metallo-beta-lactamase RAF_RS03150 75d5a67393703f3e0eed89503615890a 560 TIGRFAM TIGR00649 MG423: beta-CASP ribonuclease, RNase J family 15 554 3.7E-122 T 21-04-2016 IPR004613 Ribonuclease J GO:0003723|GO:0046872 RAF_RS03150 75d5a67393703f3e0eed89503615890a 560 Pfam PF00753 Metallo-beta-lactamase superfamily 34 180 9.4E-11 T 21-04-2016 IPR001279 Metallo-beta-lactamase RAF_RS03150 75d5a67393703f3e0eed89503615890a 560 PANTHER PTHR11203 4 557 3.8E-158 T 21-04-2016 RAF_RS01375 ba75899bd87dad92224bc67d67ff5359 661 Hamap MF_00204 UvrABC system protein B [uvrB]. 2 656 42.946 T 21-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 RAF_RS01375 ba75899bd87dad92224bc67d67ff5359 661 Pfam PF02151 UvrB/uvrC motif 624 655 3.6E-8 T 21-04-2016 IPR001943 UVR domain GO:0005515 RAF_RS01375 ba75899bd87dad92224bc67d67ff5359 661 Gene3D G3DSA:3.40.50.300 418 581 7.6E-37 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01375 ba75899bd87dad92224bc67d67ff5359 661 Gene3D G3DSA:3.30.2060.10 158 238 6.9E-14 T 21-04-2016 RAF_RS01375 ba75899bd87dad92224bc67d67ff5359 661 Pfam PF12344 Ultra-violet resistance protein B 551 592 2.3E-21 T 21-04-2016 IPR024759 UvrB, YAD/RRR-motif-containing domain RAF_RS01375 ba75899bd87dad92224bc67d67ff5359 661 Pfam PF00271 Helicase conserved C-terminal domain 434 544 6.0E-18 T 21-04-2016 IPR001650 Helicase, C-terminal RAF_RS01375 ba75899bd87dad92224bc67d67ff5359 661 Pfam PF04851 Type III restriction enzyme, res subunit 12 137 1.6E-10 T 21-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 RAF_RS01375 ba75899bd87dad92224bc67d67ff5359 661 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 4 653 0.0 T 21-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 RAF_RS01375 ba75899bd87dad92224bc67d67ff5359 661 SUPERFAMILY SSF46600 618 656 5.75E-10 T 21-04-2016 IPR001943 UVR domain GO:0005515 RAF_RS01375 ba75899bd87dad92224bc67d67ff5359 661 SMART SM00490 459 545 2.6E-19 T 21-04-2016 IPR001650 Helicase, C-terminal RAF_RS01375 ba75899bd87dad92224bc67d67ff5359 661 Gene3D G3DSA:3.40.50.300 7 88 7.8E-50 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01375 ba75899bd87dad92224bc67d67ff5359 661 Gene3D G3DSA:3.40.50.300 277 337 7.8E-50 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01375 ba75899bd87dad92224bc67d67ff5359 661 Gene3D G3DSA:3.40.50.300 387 408 7.8E-50 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01375 ba75899bd87dad92224bc67d67ff5359 661 PANTHER PTHR24029 1 660 0.0 T 21-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 RAF_RS01375 ba75899bd87dad92224bc67d67ff5359 661 Gene3D G3DSA:4.10.860.10 618 657 1.1E-13 T 21-04-2016 IPR001943 UVR domain GO:0005515 RAF_RS01375 ba75899bd87dad92224bc67d67ff5359 661 SUPERFAMILY SSF52540 1 414 7.34E-134 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01375 ba75899bd87dad92224bc67d67ff5359 661 SUPERFAMILY SSF52540 458 571 1.39E-34 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01375 ba75899bd87dad92224bc67d67ff5359 661 SUPERFAMILY SSF52540 32 81 1.39E-34 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01375 ba75899bd87dad92224bc67d67ff5359 661 SMART SM00487 8 420 2.1E-24 T 21-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain RAF_RS00190 badf73a0b4a3cd368f1157dd34a46d21 86 Gene3D G3DSA:3.20.20.20 8 76 5.4E-14 T 21-04-2016 IPR000489 Pterin-binding domain GO:0042558 RAF_RS00190 badf73a0b4a3cd368f1157dd34a46d21 86 Pfam PF00809 Pterin binding enzyme 7 67 6.4E-8 T 21-04-2016 IPR000489 Pterin-binding domain GO:0042558 RAF_RS00190 badf73a0b4a3cd368f1157dd34a46d21 86 SUPERFAMILY SSF51717 4 80 9.94E-15 T 21-04-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 RAF_RS02320 455f3c65dd8a831d7e9190602cada41b 312 SMART SM00244 18 176 9.3E-62 T 21-04-2016 IPR001107 Band 7 domain RAF_RS02320 455f3c65dd8a831d7e9190602cada41b 312 PANTHER PTHR10264:SF82 1 303 1.5E-215 T 21-04-2016 RAF_RS02320 455f3c65dd8a831d7e9190602cada41b 312 PRINTS PR00721 Stomatin signature 73 94 1.6E-26 T 21-04-2016 IPR001972 Stomatin family GO:0016020 RAF_RS02320 455f3c65dd8a831d7e9190602cada41b 312 PRINTS PR00721 Stomatin signature 128 151 1.6E-26 T 21-04-2016 IPR001972 Stomatin family GO:0016020 RAF_RS02320 455f3c65dd8a831d7e9190602cada41b 312 PRINTS PR00721 Stomatin signature 25 47 1.6E-26 T 21-04-2016 IPR001972 Stomatin family GO:0016020 RAF_RS02320 455f3c65dd8a831d7e9190602cada41b 312 PRINTS PR00721 Stomatin signature 171 192 1.6E-26 T 21-04-2016 IPR001972 Stomatin family GO:0016020 RAF_RS02320 455f3c65dd8a831d7e9190602cada41b 312 PRINTS PR00721 Stomatin signature 108 125 1.6E-26 T 21-04-2016 IPR001972 Stomatin family GO:0016020 RAF_RS02320 455f3c65dd8a831d7e9190602cada41b 312 PRINTS PR00721 Stomatin signature 152 170 1.6E-26 T 21-04-2016 IPR001972 Stomatin family GO:0016020 RAF_RS02320 455f3c65dd8a831d7e9190602cada41b 312 Pfam PF16200 C-terminal region of band_7 242 302 6.1E-26 T 21-04-2016 IPR032435 Band 7, C-terminal extension RAF_RS02320 455f3c65dd8a831d7e9190602cada41b 312 Pfam PF01145 SPFH domain / Band 7 family 22 194 5.8E-27 T 21-04-2016 IPR001107 Band 7 domain RAF_RS02320 455f3c65dd8a831d7e9190602cada41b 312 SUPERFAMILY SSF117892 49 183 1.44E-37 T 21-04-2016 IPR001107 Band 7 domain RAF_RS02320 455f3c65dd8a831d7e9190602cada41b 312 PANTHER PTHR10264 1 303 1.5E-215 T 21-04-2016 IPR001972 Stomatin family GO:0016020 RAF_RS06315 5da4ec7cf3f96c3e152634ee184f4b24 445 PANTHER PTHR11918 1 445 1.0E-183 T 21-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein RAF_RS06315 5da4ec7cf3f96c3e152634ee184f4b24 445 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 156 176 - T 21-04-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 RAF_RS06315 5da4ec7cf3f96c3e152634ee184f4b24 445 Pfam PF01938 TRAM domain 384 445 5.7E-13 T 21-04-2016 IPR002792 TRAM domain RAF_RS06315 5da4ec7cf3f96c3e152634ee184f4b24 445 Gene3D G3DSA:3.80.30.20 151 382 9.8E-74 T 21-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RAF_RS06315 5da4ec7cf3f96c3e152634ee184f4b24 445 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 3 445 70.961 T 21-04-2016 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 RAF_RS06315 5da4ec7cf3f96c3e152634ee184f4b24 445 Pfam PF04055 Radical SAM superfamily 156 330 3.7E-28 T 21-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RAF_RS06315 5da4ec7cf3f96c3e152634ee184f4b24 445 Pfam PF00919 Uncharacterized protein family UPF0004 4 108 1.1E-29 T 21-04-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 RAF_RS06315 5da4ec7cf3f96c3e152634ee184f4b24 445 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 4 442 5.5E-160 T 21-04-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 RAF_RS06315 5da4ec7cf3f96c3e152634ee184f4b24 445 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 4 444 1.9E-156 T 21-04-2016 RAF_RS06315 5da4ec7cf3f96c3e152634ee184f4b24 445 SUPERFAMILY SSF102114 107 377 3.66E-59 T 21-04-2016 RAF_RS06315 5da4ec7cf3f96c3e152634ee184f4b24 445 SMART SM00729 152 372 4.7E-55 T 21-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RAF_RS06315 5da4ec7cf3f96c3e152634ee184f4b24 445 PANTHER PTHR11918:SF43 1 445 1.0E-183 T 21-04-2016 RAF_RS00310 9781640d1c8be0f994d235301f767393 163 ProDom PD542693 RC0060 PLASMID 1 162 6.0E-72 T 21-04-2016 RAF_RS06530 5703f2d3e48092490c2a7a8d0941ba3e 224 Gene3D G3DSA:2.40.160.20 13 222 1.5E-17 T 21-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RAF_RS06530 5703f2d3e48092490c2a7a8d0941ba3e 224 Pfam PF13505 Outer membrane protein beta-barrel domain 10 222 1.4E-10 T 21-04-2016 IPR027385 Outer membrane protein beta-barrel RAF_RS06530 5703f2d3e48092490c2a7a8d0941ba3e 224 SUPERFAMILY SSF56925 28 222 1.99E-14 T 21-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 RAF_RS02600 94f83c7a5ba6b442efdbcef5f2a31949 767 Pfam PF01515 Phosphate acetyl/butaryl transferase 443 759 1.7E-72 T 21-04-2016 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 RAF_RS02600 94f83c7a5ba6b442efdbcef5f2a31949 767 Gene3D G3DSA:3.40.50.10750 579 735 7.0E-42 T 21-04-2016 RAF_RS02600 94f83c7a5ba6b442efdbcef5f2a31949 767 Gene3D G3DSA:3.40.50.10380 10 163 2.0E-49 T 21-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RAF_RS02600 94f83c7a5ba6b442efdbcef5f2a31949 767 SUPERFAMILY SSF53659 433 763 3.25E-63 T 21-04-2016 RAF_RS02600 94f83c7a5ba6b442efdbcef5f2a31949 767 Pfam PF00390 Malic enzyme, N-terminal domain 23 154 2.6E-25 T 21-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RAF_RS02600 94f83c7a5ba6b442efdbcef5f2a31949 767 PIRSF PIRSF036684 1 767 0.0 T 21-04-2016 IPR012188 Malic enzyme, phosphate acetyl/butaryl transferase GO:0004473|GO:0005829|GO:0006108|GO:0016616|GO:0030145|GO:0046872|GO:0055114 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 RAF_RS02600 94f83c7a5ba6b442efdbcef5f2a31949 767 SUPERFAMILY SSF51735 166 441 9.61E-82 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS02600 94f83c7a5ba6b442efdbcef5f2a31949 767 SMART SM00919 166 403 1.1E-133 T 21-04-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 RAF_RS02600 94f83c7a5ba6b442efdbcef5f2a31949 767 Pfam PF03949 Malic enzyme, NAD binding domain 168 359 8.1E-22 T 21-04-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 RAF_RS02600 94f83c7a5ba6b442efdbcef5f2a31949 767 Gene3D G3DSA:3.40.50.720 164 447 1.2E-82 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS02600 94f83c7a5ba6b442efdbcef5f2a31949 767 PANTHER PTHR23406:SF23 1 457 2.3E-164 T 21-04-2016 RAF_RS02600 94f83c7a5ba6b442efdbcef5f2a31949 767 SUPERFAMILY SSF53223 13 164 1.08E-50 T 21-04-2016 RAF_RS02600 94f83c7a5ba6b442efdbcef5f2a31949 767 PANTHER PTHR23406 1 457 2.3E-164 T 21-04-2016 RAF_RS02600 94f83c7a5ba6b442efdbcef5f2a31949 767 ProSitePatterns PS00331 Malic enzymes signature. 162 178 - T 21-04-2016 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 RAF_RS02600 94f83c7a5ba6b442efdbcef5f2a31949 767 SMART SM01274 21 154 5.3E-79 T 21-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RAF_RS00335 9ea4f6d4d2bf931e8c5454ed6db64d90 121 TIGRFAM TIGR00166 S6: ribosomal protein bS6 2 94 1.2E-22 T 21-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 RAF_RS00335 9ea4f6d4d2bf931e8c5454ed6db64d90 121 PANTHER PTHR21011 1 106 4.9E-24 T 21-04-2016 RAF_RS00335 9ea4f6d4d2bf931e8c5454ed6db64d90 121 Pfam PF01250 Ribosomal protein S6 4 91 6.0E-26 T 21-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 RAF_RS00335 9ea4f6d4d2bf931e8c5454ed6db64d90 121 Gene3D G3DSA:3.30.70.60 1 104 6.6E-33 T 21-04-2016 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 RAF_RS00335 9ea4f6d4d2bf931e8c5454ed6db64d90 121 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 95 20.302 T 21-04-2016 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 RAF_RS00335 9ea4f6d4d2bf931e8c5454ed6db64d90 121 SUPERFAMILY SSF54995 1 103 3.53E-31 T 21-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 RAF_RS00005 ebd706ec79b97aff20a6bbf4a27888d9 273 Hamap MF_00921 Putative pyruvate, phosphate dikinase regulatory protein. 4 267 52.881 T 21-04-2016 IPR026565 Putative pyruvate, phosphate dikinase regulatory protein RAF_RS00005 ebd706ec79b97aff20a6bbf4a27888d9 273 PANTHER PTHR31756 5 272 1.7E-76 T 21-04-2016 RAF_RS00005 ebd706ec79b97aff20a6bbf4a27888d9 273 Pfam PF03618 Kinase/pyrophosphorylase 6 261 2.1E-80 T 21-04-2016 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 RAF_RS00005 ebd706ec79b97aff20a6bbf4a27888d9 273 PANTHER PTHR31756:SF3 5 272 1.7E-76 T 21-04-2016 RAF_RS03075 ae589df7199f7003c92b76ea5d3beb7e 291 PIRSF PIRSF001553 1 290 2.3E-130 T 21-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RAF_RS03075 ae589df7199f7003c92b76ea5d3beb7e 291 Gene3D G3DSA:3.40.50.720 3 119 4.3E-57 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS03075 ae589df7199f7003c92b76ea5d3beb7e 291 Pfam PF00549 CoA-ligase 151 272 2.1E-20 T 21-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RAF_RS03075 ae589df7199f7003c92b76ea5d3beb7e 291 PANTHER PTHR11117 1 289 2.5E-196 T 21-04-2016 RAF_RS03075 ae589df7199f7003c92b76ea5d3beb7e 291 Gene3D G3DSA:3.40.50.261 120 288 7.4E-77 T 21-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RAF_RS03075 ae589df7199f7003c92b76ea5d3beb7e 291 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 237 250 - T 21-04-2016 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site RAF_RS03075 ae589df7199f7003c92b76ea5d3beb7e 291 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 21-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RAF_RS03075 ae589df7199f7003c92b76ea5d3beb7e 291 Pfam PF02629 CoA binding domain 6 99 4.9E-31 T 21-04-2016 IPR003781 CoA-binding GO:0048037 RAF_RS03075 ae589df7199f7003c92b76ea5d3beb7e 291 SUPERFAMILY SSF51735 1 122 6.83E-43 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS03075 ae589df7199f7003c92b76ea5d3beb7e 291 SMART SM00881 4 100 4.3E-32 T 21-04-2016 IPR003781 CoA-binding GO:0048037 RAF_RS03075 ae589df7199f7003c92b76ea5d3beb7e 291 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 3.5E-39 T 21-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RAF_RS03075 ae589df7199f7003c92b76ea5d3beb7e 291 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 3.5E-39 T 21-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RAF_RS03075 ae589df7199f7003c92b76ea5d3beb7e 291 PRINTS PR01798 Succinyl-CoA synthase signature 241 258 3.5E-39 T 21-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RAF_RS03075 ae589df7199f7003c92b76ea5d3beb7e 291 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 3.5E-39 T 21-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RAF_RS03075 ae589df7199f7003c92b76ea5d3beb7e 291 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 289 4.3E-146 T 21-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 RAF_RS03075 ae589df7199f7003c92b76ea5d3beb7e 291 SUPERFAMILY SSF52210 123 288 2.35E-54 T 21-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RAF_RS06835 d3a87e901efd0a09127a22ad1ac4d643 254 SMART SM00849 35 203 2.9E-4 T 21-04-2016 IPR001279 Metallo-beta-lactamase RAF_RS06835 d3a87e901efd0a09127a22ad1ac4d643 254 Gene3D G3DSA:3.60.15.10 1 254 6.1E-67 T 21-04-2016 IPR001279 Metallo-beta-lactamase RAF_RS06835 d3a87e901efd0a09127a22ad1ac4d643 254 PANTHER PTHR12553 3 249 5.9E-47 T 21-04-2016 RAF_RS06835 d3a87e901efd0a09127a22ad1ac4d643 254 SUPERFAMILY SSF56281 3 254 5.77E-42 T 21-04-2016 IPR001279 Metallo-beta-lactamase RAF_RS06835 d3a87e901efd0a09127a22ad1ac4d643 254 Pfam PF12706 Beta-lactamase superfamily domain 48 224 4.5E-23 T 21-04-2016 IPR001279 Metallo-beta-lactamase RAF_RS06835 d3a87e901efd0a09127a22ad1ac4d643 254 PANTHER PTHR12553:SF7 3 249 5.9E-47 T 21-04-2016 RAF_RS02120 47463af211386e2817a0673b08d92152 293 Pfam PF04545 Sigma-70, region 4 232 283 2.1E-11 T 21-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAF_RS02120 47463af211386e2817a0673b08d92152 293 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 49 284 7.6E-25 T 21-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAF_RS02120 47463af211386e2817a0673b08d92152 293 SUPERFAMILY SSF88946 12 121 1.73E-37 T 21-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAF_RS02120 47463af211386e2817a0673b08d92152 293 Gene3D G3DSA:1.10.10.10 226 284 9.9E-15 T 21-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RAF_RS02120 47463af211386e2817a0673b08d92152 293 Pfam PF04542 Sigma-70 region 2 53 121 7.2E-15 T 21-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAF_RS02120 47463af211386e2817a0673b08d92152 293 PANTHER PTHR30376 2 285 1.9E-88 T 21-04-2016 RAF_RS02120 47463af211386e2817a0673b08d92152 293 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 16 286 3.5E-111 T 21-04-2016 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 RAF_RS02120 47463af211386e2817a0673b08d92152 293 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 2 287 48.894 T 21-04-2016 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 RAF_RS02120 47463af211386e2817a0673b08d92152 293 Gene3D G3DSA:1.10.601.10 18 119 6.6E-37 T 21-04-2016 RAF_RS02120 47463af211386e2817a0673b08d92152 293 SUPERFAMILY SSF88659 192 287 7.85E-14 T 21-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAF_RS02120 47463af211386e2817a0673b08d92152 293 PRINTS PR00046 Major sigma-70 factor signature 77 90 3.5E-18 T 21-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAF_RS02120 47463af211386e2817a0673b08d92152 293 PRINTS PR00046 Major sigma-70 factor signature 270 281 3.5E-18 T 21-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAF_RS02120 47463af211386e2817a0673b08d92152 293 PRINTS PR00046 Major sigma-70 factor signature 255 270 3.5E-18 T 21-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAF_RS02120 47463af211386e2817a0673b08d92152 293 PRINTS PR00046 Major sigma-70 factor signature 236 248 3.5E-18 T 21-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAF_RS02120 47463af211386e2817a0673b08d92152 293 PRINTS PR00046 Major sigma-70 factor signature 101 109 3.5E-18 T 21-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAF_RS02120 47463af211386e2817a0673b08d92152 293 Pfam PF00140 Sigma-70 factor, region 1.2 19 46 1.5E-5 T 21-04-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAF_RS02120 47463af211386e2817a0673b08d92152 293 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 77 90 - T 21-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAF_RS02120 47463af211386e2817a0673b08d92152 293 PIRSF PIRSF000770 3 292 7.5E-33 T 21-04-2016 IPR016263 RNA polymerase sporulation-specific sigma factor GO:0003677|GO:0006351|GO:0016987|GO:0030435 RAF_RS01615 60e6c8dcebc3ccb706a925ed11b6848e 497 PANTHER PTHR24423:SF374 247 488 4.0E-69 T 21-04-2016 RAF_RS01615 60e6c8dcebc3ccb706a925ed11b6848e 497 PANTHER PTHR24423:SF374 10 20 4.0E-69 T 21-04-2016 RAF_RS01615 60e6c8dcebc3ccb706a925ed11b6848e 497 SUPERFAMILY SSF55874 322 489 1.15E-39 T 21-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RAF_RS01615 60e6c8dcebc3ccb706a925ed11b6848e 497 SUPERFAMILY SSF47384 255 334 6.87E-19 T 21-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAF_RS01615 60e6c8dcebc3ccb706a925ed11b6848e 497 Gene3D G3DSA:3.30.565.10 319 489 3.1E-41 T 21-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RAF_RS01615 60e6c8dcebc3ccb706a925ed11b6848e 497 PANTHER PTHR24423 247 488 4.0E-69 T 21-04-2016 RAF_RS01615 60e6c8dcebc3ccb706a925ed11b6848e 497 PANTHER PTHR24423 10 20 4.0E-69 T 21-04-2016 RAF_RS01615 60e6c8dcebc3ccb706a925ed11b6848e 497 Gene3D G3DSA:1.10.287.130 261 318 3.7E-18 T 21-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAF_RS01615 60e6c8dcebc3ccb706a925ed11b6848e 497 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 380 489 6.5E-24 T 21-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RAF_RS01615 60e6c8dcebc3ccb706a925ed11b6848e 497 Pfam PF00512 His Kinase A (phospho-acceptor) domain 269 331 4.5E-18 T 21-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAF_RS01615 60e6c8dcebc3ccb706a925ed11b6848e 497 SMART SM00388 268 333 3.3E-20 T 21-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RAF_RS01615 60e6c8dcebc3ccb706a925ed11b6848e 497 SMART SM00387 379 493 4.7E-33 T 21-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RAF_RS01615 60e6c8dcebc3ccb706a925ed11b6848e 497 PRINTS PR00344 Bacterial sensor protein C-terminal signature 418 432 1.3E-10 T 21-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RAF_RS01615 60e6c8dcebc3ccb706a925ed11b6848e 497 PRINTS PR00344 Bacterial sensor protein C-terminal signature 477 490 1.3E-10 T 21-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RAF_RS01615 60e6c8dcebc3ccb706a925ed11b6848e 497 PRINTS PR00344 Bacterial sensor protein C-terminal signature 453 471 1.3E-10 T 21-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 RAF_RS02190 ab02677f91ebde6d2aeb6bcfa4497254 235 PANTHER PTHR21262:SF0 16 181 2.7E-31 T 21-04-2016 RAF_RS02190 ab02677f91ebde6d2aeb6bcfa4497254 235 PANTHER PTHR21262 16 181 2.7E-31 T 21-04-2016 RAF_RS02190 ab02677f91ebde6d2aeb6bcfa4497254 235 Pfam PF13328 HD domain 45 184 2.3E-17 T 21-04-2016 IPR003607 HD/PDEase domain RAF_RS02190 ab02677f91ebde6d2aeb6bcfa4497254 235 SUPERFAMILY SSF109604 20 206 1.67E-46 T 21-04-2016 RAF_RS05085 1e9beb6c76270ef5311847a672b12e2b 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 26.546 T 21-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RAF_RS05085 1e9beb6c76270ef5311847a672b12e2b 122 PANTHER PTHR11761:SF3 1 122 6.1E-67 T 21-04-2016 RAF_RS05085 1e9beb6c76270ef5311847a672b12e2b 122 SUPERFAMILY SSF50193 1 122 4.32E-49 T 21-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RAF_RS05085 1e9beb6c76270ef5311847a672b12e2b 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 8.6E-53 T 21-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RAF_RS05085 1e9beb6c76270ef5311847a672b12e2b 122 Gene3D G3DSA:2.40.150.20 1 122 5.6E-52 T 21-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RAF_RS05085 1e9beb6c76270ef5311847a672b12e2b 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 21-04-2016 IPR019972 Ribosomal protein L14P, conserved site RAF_RS05085 1e9beb6c76270ef5311847a672b12e2b 122 SMART SM01374 1 122 8.2E-80 T 21-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RAF_RS05085 1e9beb6c76270ef5311847a672b12e2b 122 PANTHER PTHR11761 1 122 6.1E-67 T 21-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RAF_RS05085 1e9beb6c76270ef5311847a672b12e2b 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 4.5E-57 T 21-04-2016 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 RAF_RS01230 5a1a94db9d650146f70ac66fa25afd8a 627 Gene3D G3DSA:3.90.640.10 224 308 3.0E-29 T 21-04-2016 RAF_RS01230 5a1a94db9d650146f70ac66fa25afd8a 627 Gene3D G3DSA:3.30.420.40 4 52 1.0E-66 T 21-04-2016 RAF_RS01230 5a1a94db9d650146f70ac66fa25afd8a 627 Gene3D G3DSA:3.30.420.40 118 190 1.0E-66 T 21-04-2016 RAF_RS01230 5a1a94db9d650146f70ac66fa25afd8a 627 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 190 203 - T 21-04-2016 IPR018181 Heat shock protein 70, conserved site RAF_RS01230 5a1a94db9d650146f70ac66fa25afd8a 627 Gene3D G3DSA:2.60.34.10 384 525 7.8E-73 T 21-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain RAF_RS01230 5a1a94db9d650146f70ac66fa25afd8a 627 Pfam PF00012 Hsp70 protein 4 597 7.8E-272 T 21-04-2016 IPR013126 Heat shock protein 70 family RAF_RS01230 5a1a94db9d650146f70ac66fa25afd8a 627 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 597 1.0E-293 T 21-04-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 RAF_RS01230 5a1a94db9d650146f70ac66fa25afd8a 627 SUPERFAMILY SSF100934 528 596 1.37E-7 T 21-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain RAF_RS01230 5a1a94db9d650146f70ac66fa25afd8a 627 Gene3D G3DSA:1.20.1270.10 526 597 2.2E-29 T 21-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain RAF_RS01230 5a1a94db9d650146f70ac66fa25afd8a 627 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 624 37.06 T 21-04-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 RAF_RS01230 5a1a94db9d650146f70ac66fa25afd8a 627 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 331 345 - T 21-04-2016 IPR018181 Heat shock protein 70, conserved site RAF_RS01230 5a1a94db9d650146f70ac66fa25afd8a 627 SUPERFAMILY SSF53067 186 376 5.19E-68 T 21-04-2016 RAF_RS01230 5a1a94db9d650146f70ac66fa25afd8a 627 PANTHER PTHR19375:SF173 2 627 0.0 T 21-04-2016 RAF_RS01230 5a1a94db9d650146f70ac66fa25afd8a 627 PRINTS PR00301 70kDa heat shock protein signature 3 16 2.86E-79 T 21-04-2016 IPR013126 Heat shock protein 70 family RAF_RS01230 5a1a94db9d650146f70ac66fa25afd8a 627 PRINTS PR00301 70kDa heat shock protein signature 328 344 2.86E-79 T 21-04-2016 IPR013126 Heat shock protein 70 family RAF_RS01230 5a1a94db9d650146f70ac66fa25afd8a 627 PRINTS PR00301 70kDa heat shock protein signature 196 206 2.86E-79 T 21-04-2016 IPR013126 Heat shock protein 70 family RAF_RS01230 5a1a94db9d650146f70ac66fa25afd8a 627 PRINTS PR00301 70kDa heat shock protein signature 359 379 2.86E-79 T 21-04-2016 IPR013126 Heat shock protein 70 family RAF_RS01230 5a1a94db9d650146f70ac66fa25afd8a 627 PRINTS PR00301 70kDa heat shock protein signature 53 61 2.86E-79 T 21-04-2016 IPR013126 Heat shock protein 70 family RAF_RS01230 5a1a94db9d650146f70ac66fa25afd8a 627 PRINTS PR00301 70kDa heat shock protein signature 137 157 2.86E-79 T 21-04-2016 IPR013126 Heat shock protein 70 family RAF_RS01230 5a1a94db9d650146f70ac66fa25afd8a 627 PRINTS PR00301 70kDa heat shock protein signature 31 43 2.86E-79 T 21-04-2016 IPR013126 Heat shock protein 70 family RAF_RS01230 5a1a94db9d650146f70ac66fa25afd8a 627 PRINTS PR00301 70kDa heat shock protein signature 382 401 2.86E-79 T 21-04-2016 IPR013126 Heat shock protein 70 family RAF_RS01230 5a1a94db9d650146f70ac66fa25afd8a 627 PRINTS PR00301 70kDa heat shock protein signature 463 479 2.86E-79 T 21-04-2016 IPR013126 Heat shock protein 70 family RAF_RS01230 5a1a94db9d650146f70ac66fa25afd8a 627 SUPERFAMILY SSF100920 379 534 3.79E-62 T 21-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain RAF_RS01230 5a1a94db9d650146f70ac66fa25afd8a 627 PANTHER PTHR19375 2 627 0.0 T 21-04-2016 RAF_RS01230 5a1a94db9d650146f70ac66fa25afd8a 627 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 21-04-2016 IPR018181 Heat shock protein 70, conserved site RAF_RS01230 5a1a94db9d650146f70ac66fa25afd8a 627 SUPERFAMILY SSF53067 1 182 2.59E-66 T 21-04-2016 RAF_RS01230 5a1a94db9d650146f70ac66fa25afd8a 627 Gene3D G3DSA:3.30.420.40 191 223 2.5E-37 T 21-04-2016 RAF_RS01230 5a1a94db9d650146f70ac66fa25afd8a 627 Gene3D G3DSA:3.30.420.40 313 355 2.5E-37 T 21-04-2016 RAF_RS01230 5a1a94db9d650146f70ac66fa25afd8a 627 Gene3D G3DSA:3.30.30.30 53 105 1.0E-24 T 21-04-2016 RAF_RS04880 aa1f4f6413d2887b2022bfb4c845a0a8 1140 SUPERFAMILY SSF69593 395 629 5.36E-29 T 21-04-2016 RAF_RS04880 aa1f4f6413d2887b2022bfb4c845a0a8 1140 Gene3D G3DSA:3.30.300.30 1041 1133 7.6E-5 T 21-04-2016 RAF_RS04880 aa1f4f6413d2887b2022bfb4c845a0a8 1140 SUPERFAMILY SSF103473 22 427 1.06E-26 T 21-04-2016 IPR020846 Major facilitator superfamily domain RAF_RS04880 aa1f4f6413d2887b2022bfb4c845a0a8 1140 Gene3D G3DSA:1.20.1250.20 223 425 2.9E-10 T 21-04-2016 RAF_RS04880 aa1f4f6413d2887b2022bfb4c845a0a8 1140 Gene3D G3DSA:3.40.1130.10 446 619 2.0E-14 T 21-04-2016 RAF_RS04880 aa1f4f6413d2887b2022bfb4c845a0a8 1140 SMART SM00563 463 573 4.2E-29 T 21-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 RAF_RS04880 aa1f4f6413d2887b2022bfb4c845a0a8 1140 SUPERFAMILY SSF56801 620 1135 3.66E-90 T 21-04-2016 RAF_RS04880 aa1f4f6413d2887b2022bfb4c845a0a8 1140 PANTHER PTHR24096 557 1140 3.8E-295 T 21-04-2016 RAF_RS04880 aa1f4f6413d2887b2022bfb4c845a0a8 1140 Pfam PF00501 AMP-binding enzyme 659 1045 1.6E-63 T 21-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 RAF_RS04880 aa1f4f6413d2887b2022bfb4c845a0a8 1140 Gene3D G3DSA:3.40.50.980 641 816 1.6E-18 T 21-04-2016 RAF_RS04880 aa1f4f6413d2887b2022bfb4c845a0a8 1140 Pfam PF07690 Major Facilitator Superfamily 19 382 8.6E-19 T 21-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAF_RS04880 aa1f4f6413d2887b2022bfb4c845a0a8 1140 ProSitePatterns PS00455 Putative AMP-binding domain signature. 810 821 - T 21-04-2016 IPR020845 AMP-binding, conserved site RAF_RS04880 aa1f4f6413d2887b2022bfb4c845a0a8 1140 Gene3D G3DSA:1.20.1250.20 6 196 9.7E-10 T 21-04-2016 RAF_RS04880 aa1f4f6413d2887b2022bfb4c845a0a8 1140 Pfam PF01553 Acyltransferase 448 570 1.1E-17 T 21-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 RAF_RS04880 aa1f4f6413d2887b2022bfb4c845a0a8 1140 Gene3D G3DSA:2.30.38.10 973 1038 1.3E-10 T 21-04-2016 RAF_RS04880 aa1f4f6413d2887b2022bfb4c845a0a8 1140 PANTHER PTHR24096:SF177 557 1140 3.8E-295 T 21-04-2016 RAF_RS04880 aa1f4f6413d2887b2022bfb4c845a0a8 1140 Gene3D G3DSA:3.40.50.980 817 972 1.4E-34 T 21-04-2016 RAF_RS00720 58d1158d3b0e37c2551c2d047ffe6e34 212 Gene3D G3DSA:3.40.50.300 23 209 6.8E-38 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00720 58d1158d3b0e37c2551c2d047ffe6e34 212 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 22 204 3.9E-63 T 21-04-2016 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0000917|GO:0005525 RAF_RS00720 58d1158d3b0e37c2551c2d047ffe6e34 212 PANTHER PTHR11649 19 206 7.8E-43 T 21-04-2016 RAF_RS00720 58d1158d3b0e37c2551c2d047ffe6e34 212 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 27 208 26.02 T 21-04-2016 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0000917|GO:0005525 RAF_RS00720 58d1158d3b0e37c2551c2d047ffe6e34 212 SUPERFAMILY SSF52540 32 208 1.07E-34 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00720 58d1158d3b0e37c2551c2d047ffe6e34 212 Pfam PF01926 50S ribosome-binding GTPase 41 159 3.1E-22 T 21-04-2016 IPR006073 GTP binding domain GO:0005525 RAF_RS01620 2e2318e56444fc2722a4624a2352db76 245 SUPERFAMILY SSF48452 118 227 5.26E-12 T 21-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RAF_RS01620 2e2318e56444fc2722a4624a2352db76 245 Gene3D G3DSA:1.25.40.10 121 224 5.6E-11 T 21-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RAF_RS01620 2e2318e56444fc2722a4624a2352db76 245 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 118 230 7.8E-28 T 21-04-2016 IPR014162 Tol-Pal system, YbgF RAF_RS01620 2e2318e56444fc2722a4624a2352db76 245 Pfam PF13432 Tetratricopeptide repeat 121 185 4.4E-6 T 21-04-2016 RAF_RS01620 2e2318e56444fc2722a4624a2352db76 245 Pfam PF13174 Tetratricopeptide repeat 192 223 0.0026 T 21-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 RAF_RS01960 24c774648764f50f47ab74badb9a2173 729 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 521 545 4.6E-44 T 21-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RAF_RS01960 24c774648764f50f47ab74badb9a2173 729 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 637 652 4.6E-44 T 21-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RAF_RS01960 24c774648764f50f47ab74badb9a2173 729 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 495 513 4.6E-44 T 21-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RAF_RS01960 24c774648764f50f47ab74badb9a2173 729 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 655 677 4.6E-44 T 21-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RAF_RS01960 24c774648764f50f47ab74badb9a2173 729 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 549 568 4.6E-44 T 21-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RAF_RS01960 24c774648764f50f47ab74badb9a2173 729 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 579 599 4.6E-44 T 21-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RAF_RS01960 24c774648764f50f47ab74badb9a2173 729 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 3 451 2.3E-108 T 21-04-2016 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 RAF_RS01960 24c774648764f50f47ab74badb9a2173 729 TIGRFAM TIGR03775 RPE3: rickettsial palindromic element RPE3 domain 175 217 1.6E-21 T 21-04-2016 IPR022437 Rickettsia palindromic element RPE3 RAF_RS01960 24c774648764f50f47ab74badb9a2173 729 Gene3D G3DSA:3.40.50.1820 470 702 4.1E-32 T 21-04-2016 IPR029058 Alpha/Beta hydrolase fold RAF_RS01960 24c774648764f50f47ab74badb9a2173 729 SUPERFAMILY SSF53474 464 712 4.49E-41 T 21-04-2016 IPR029058 Alpha/Beta hydrolase fold RAF_RS01960 24c774648764f50f47ab74badb9a2173 729 SUPERFAMILY SSF50993 216 459 1.46E-69 T 21-04-2016 RAF_RS01960 24c774648764f50f47ab74badb9a2173 729 SUPERFAMILY SSF50993 1 173 1.46E-69 T 21-04-2016 RAF_RS01960 24c774648764f50f47ab74badb9a2173 729 PANTHER PTHR11757 201 729 3.5E-291 T 21-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RAF_RS01960 24c774648764f50f47ab74badb9a2173 729 PANTHER PTHR11757 1 166 3.5E-291 T 21-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RAF_RS01960 24c774648764f50f47ab74badb9a2173 729 Gene3D G3DSA:2.130.10.120 76 178 2.8E-100 T 21-04-2016 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 RAF_RS01960 24c774648764f50f47ab74badb9a2173 729 Gene3D G3DSA:2.130.10.120 221 455 2.8E-100 T 21-04-2016 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 RAF_RS01960 24c774648764f50f47ab74badb9a2173 729 Pfam PF00326 Prolyl oligopeptidase family 511 726 7.4E-66 T 21-04-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 RAF_RS01960 24c774648764f50f47ab74badb9a2173 729 PANTHER PTHR11757:SF3 201 729 3.5E-291 T 21-04-2016 RAF_RS01960 24c774648764f50f47ab74badb9a2173 729 PANTHER PTHR11757:SF3 1 166 3.5E-291 T 21-04-2016 RAF_RS06185 183b1449d6866995654b597253d3cb40 554 SUPERFAMILY SSF53335 68 191 1.41E-29 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS06185 183b1449d6866995654b597253d3cb40 554 Gene3D G3DSA:3.40.50.150 38 189 4.8E-29 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS06185 183b1449d6866995654b597253d3cb40 554 Pfam PF13847 Methyltransferase domain 72 181 7.3E-18 T 21-04-2016 IPR025714 Methyltransferase domain RAF_RS06185 183b1449d6866995654b597253d3cb40 554 Pfam PF10119 Predicted methyltransferase regulatory domain 246 327 2.5E-25 T 21-04-2016 IPR018773 Methyltransferase regulatory domain, predicted RAF_RS06185 183b1449d6866995654b597253d3cb40 554 PANTHER PTHR10108 401 410 2.1E-25 T 21-04-2016 RAF_RS06185 183b1449d6866995654b597253d3cb40 554 PANTHER PTHR10108 49 186 2.1E-25 T 21-04-2016 RAF_RS06185 183b1449d6866995654b597253d3cb40 554 PANTHER PTHR10108:SF829 401 410 2.1E-25 T 21-04-2016 RAF_RS06185 183b1449d6866995654b597253d3cb40 554 PANTHER PTHR10108:SF829 49 186 2.1E-25 T 21-04-2016 RAF_RS00440 6498edde84e9c099b5da4fa26ab3bb67 140 SUPERFAMILY SSF54919 1 139 2.62E-51 T 21-04-2016 RAF_RS00440 6498edde84e9c099b5da4fa26ab3bb67 140 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 32.696 T 21-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RAF_RS00440 6498edde84e9c099b5da4fa26ab3bb67 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 8.7E-36 T 21-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RAF_RS00440 6498edde84e9c099b5da4fa26ab3bb67 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 8.7E-36 T 21-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RAF_RS00440 6498edde84e9c099b5da4fa26ab3bb67 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 8.7E-36 T 21-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RAF_RS00440 6498edde84e9c099b5da4fa26ab3bb67 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 8.7E-36 T 21-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RAF_RS00440 6498edde84e9c099b5da4fa26ab3bb67 140 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 8.7E-36 T 21-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RAF_RS00440 6498edde84e9c099b5da4fa26ab3bb67 140 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 21-04-2016 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RAF_RS00440 6498edde84e9c099b5da4fa26ab3bb67 140 Gene3D G3DSA:3.30.70.141 1 139 3.7E-52 T 21-04-2016 RAF_RS00440 6498edde84e9c099b5da4fa26ab3bb67 140 Pfam PF00334 Nucleoside diphosphate kinase 4 138 1.3E-50 T 21-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RAF_RS00440 6498edde84e9c099b5da4fa26ab3bb67 140 SMART SM00562 3 140 3.1E-79 T 21-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RAF_RS00440 6498edde84e9c099b5da4fa26ab3bb67 140 PANTHER PTHR11349 1 140 6.6E-54 T 21-04-2016 RAF_RS05465 706b0711d9581b2990b597e3ba72c566 114 Pfam PF05534 HicB family 69 108 8.0E-13 T 21-04-2016 IPR008651 Uncharacterised protein family HicB RAF_RS05465 706b0711d9581b2990b597e3ba72c566 114 SUPERFAMILY SSF143100 10 73 8.24E-10 T 21-04-2016 RAF_RS05465 706b0711d9581b2990b597e3ba72c566 114 SUPERFAMILY SSF47598 72 112 5.86E-5 T 21-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 RAF_RS00385 d6da373404f3f8eb49a3c67adf646097 387 SUPERFAMILY SSF50182 182 247 1.57E-12 T 21-04-2016 IPR010920 LSM domain RAF_RS00385 d6da373404f3f8eb49a3c67adf646097 387 PANTHER PTHR30414 5 383 1.2E-64 T 21-04-2016 RAF_RS00385 d6da373404f3f8eb49a3c67adf646097 387 Pfam PF00924 Mechanosensitive ion channel 139 380 7.5E-49 T 21-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 RAF_RS00385 d6da373404f3f8eb49a3c67adf646097 387 Gene3D G3DSA:2.30.30.60 199 247 3.7E-12 T 21-04-2016 RAF_RS00385 d6da373404f3f8eb49a3c67adf646097 387 PANTHER PTHR30414:SF0 5 383 1.2E-64 T 21-04-2016 IPR030192 Miniconductance mechanosensitive channel YbdG GO:0008381|GO:0016021|GO:0071470 RAF_RS06085 0ae92397132b2c56ff6c688ff215cdb7 318 PANTHER PTHR34069:SF2 1 318 3.3E-121 T 21-04-2016 RAF_RS06085 0ae92397132b2c56ff6c688ff215cdb7 318 Gene3D G3DSA:3.40.47.10 161 318 1.7E-49 T 21-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RAF_RS06085 0ae92397132b2c56ff6c688ff215cdb7 318 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 1 318 3.6E-140 T 21-04-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 RAF_RS06085 0ae92397132b2c56ff6c688ff215cdb7 318 PANTHER PTHR34069 1 318 3.3E-121 T 21-04-2016 RAF_RS06085 0ae92397132b2c56ff6c688ff215cdb7 318 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 229 318 2.1E-34 T 21-04-2016 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 RAF_RS06085 0ae92397132b2c56ff6c688ff215cdb7 318 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 106 184 1.1E-30 T 21-04-2016 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 RAF_RS06085 0ae92397132b2c56ff6c688ff215cdb7 318 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 1 318 67.617 T 21-04-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 RAF_RS06085 0ae92397132b2c56ff6c688ff215cdb7 318 Gene3D G3DSA:3.40.47.10 1 160 3.4E-65 T 21-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RAF_RS06085 0ae92397132b2c56ff6c688ff215cdb7 318 SUPERFAMILY SSF53901 4 318 8.8E-65 T 21-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 RAF_RS02215 d067778bc1258488a90c116a339b912d 119 PANTHER PTHR23089 3 112 5.5E-35 T 21-04-2016 IPR001310 Histidine triad (HIT) protein RAF_RS02215 d067778bc1258488a90c116a339b912d 119 SUPERFAMILY SSF54197 2 109 4.79E-29 T 21-04-2016 IPR011146 HIT-like domain GO:0003824 RAF_RS02215 d067778bc1258488a90c116a339b912d 119 Pfam PF01230 HIT domain 15 111 3.1E-21 T 21-04-2016 IPR001310 Histidine triad (HIT) protein RAF_RS02215 d067778bc1258488a90c116a339b912d 119 PANTHER PTHR23089:SF2 3 112 5.5E-35 T 21-04-2016 RAF_RS02215 d067778bc1258488a90c116a339b912d 119 ProSitePatterns PS00892 HIT domain signature. 90 108 - T 21-04-2016 IPR019808 Histidine triad, conserved site RAF_RS02215 d067778bc1258488a90c116a339b912d 119 PRINTS PR00332 Histidine triad family signature 7 23 4.9E-18 T 21-04-2016 IPR001310 Histidine triad (HIT) protein RAF_RS02215 d067778bc1258488a90c116a339b912d 119 PRINTS PR00332 Histidine triad family signature 28 46 4.9E-18 T 21-04-2016 IPR001310 Histidine triad (HIT) protein RAF_RS02215 d067778bc1258488a90c116a339b912d 119 PRINTS PR00332 Histidine triad family signature 97 107 4.9E-18 T 21-04-2016 IPR001310 Histidine triad (HIT) protein RAF_RS02215 d067778bc1258488a90c116a339b912d 119 Gene3D G3DSA:3.30.428.10 3 111 9.6E-31 T 21-04-2016 IPR011146 HIT-like domain GO:0003824 RAF_RS04330 e6d75ee1e25e87718dfe74f88bcbe9f0 581 PANTHER PTHR14136 59 284 9.2E-23 T 21-04-2016 RAF_RS04330 e6d75ee1e25e87718dfe74f88bcbe9f0 581 Pfam PF13599 Pentapeptide repeats (9 copies) 476 549 2.5E-9 T 21-04-2016 IPR001646 Pentapeptide repeat RAF_RS04330 e6d75ee1e25e87718dfe74f88bcbe9f0 581 Pfam PF13599 Pentapeptide repeats (9 copies) 134 206 1.4E-10 T 21-04-2016 IPR001646 Pentapeptide repeat RAF_RS04330 e6d75ee1e25e87718dfe74f88bcbe9f0 581 Pfam PF13599 Pentapeptide repeats (9 copies) 345 412 1.2E-6 T 21-04-2016 IPR001646 Pentapeptide repeat RAF_RS04330 e6d75ee1e25e87718dfe74f88bcbe9f0 581 SUPERFAMILY SSF141571 70 236 3.53E-29 T 21-04-2016 RAF_RS04330 e6d75ee1e25e87718dfe74f88bcbe9f0 581 SUPERFAMILY SSF141571 209 353 1.83E-15 T 21-04-2016 RAF_RS04330 e6d75ee1e25e87718dfe74f88bcbe9f0 581 SUPERFAMILY SSF141571 473 576 2.75E-22 T 21-04-2016 RAF_RS04330 e6d75ee1e25e87718dfe74f88bcbe9f0 581 Pfam PF00805 Pentapeptide repeats (8 copies) 223 253 0.005 T 21-04-2016 IPR001646 Pentapeptide repeat RAF_RS04330 e6d75ee1e25e87718dfe74f88bcbe9f0 581 Pfam PF00805 Pentapeptide repeats (8 copies) 258 287 0.0084 T 21-04-2016 IPR001646 Pentapeptide repeat RAF_RS04330 e6d75ee1e25e87718dfe74f88bcbe9f0 581 Pfam PF00805 Pentapeptide repeats (8 copies) 74 110 1.5E-5 T 21-04-2016 IPR001646 Pentapeptide repeat RAF_RS04330 e6d75ee1e25e87718dfe74f88bcbe9f0 581 SUPERFAMILY SSF141571 328 430 1.96E-10 T 21-04-2016 RAF_RS04945 f536f84fc0b38eaad22465bf7c8e05df 239 Pfam PF03725 3' exoribonuclease family, domain 2 159 222 2.1E-10 T 21-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 RAF_RS04945 f536f84fc0b38eaad22465bf7c8e05df 239 Gene3D G3DSA:3.30.230.70 8 235 2.0E-28 T 21-04-2016 IPR027408 PNPase/RNase PH domain RAF_RS04945 f536f84fc0b38eaad22465bf7c8e05df 239 SUPERFAMILY SSF54211 1 181 2.38E-44 T 21-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RAF_RS04945 f536f84fc0b38eaad22465bf7c8e05df 239 Pfam PF01138 3' exoribonuclease family, domain 1 10 139 1.4E-21 T 21-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 RAF_RS04945 f536f84fc0b38eaad22465bf7c8e05df 239 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 2 236 3.0E-115 T 21-04-2016 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 RAF_RS04945 f536f84fc0b38eaad22465bf7c8e05df 239 PANTHER PTHR11953 1 236 4.5E-73 T 21-04-2016 RAF_RS04945 f536f84fc0b38eaad22465bf7c8e05df 239 SUPERFAMILY SSF55666 154 235 1.57E-22 T 21-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 RAF_RS04945 f536f84fc0b38eaad22465bf7c8e05df 239 ProSitePatterns PS01277 Ribonuclease PH signature. 116 129 - T 21-04-2016 IPR018336 Ribonuclease PH, conserved site RAF_RS04945 f536f84fc0b38eaad22465bf7c8e05df 239 Hamap MF_00564 Ribonuclease PH [rph]. 1 237 45.887 T 21-04-2016 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 RAF_RS04945 f536f84fc0b38eaad22465bf7c8e05df 239 PANTHER PTHR11953:SF0 1 236 4.5E-73 T 21-04-2016 RAF_RS02360 2ec3804084bc7585d97bbac4f3b21e7a 377 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 2 364 3.5E-78 T 21-04-2016 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 KEGG: 00520+5.1.3.14|MetaCyc: PWY-7335 RAF_RS02360 2ec3804084bc7585d97bbac4f3b21e7a 377 Gene3D G3DSA:3.40.50.2000 1 196 5.7E-64 T 21-04-2016 RAF_RS02360 2ec3804084bc7585d97bbac4f3b21e7a 377 PANTHER PTHR18964:SF70 1 376 4.7E-154 T 21-04-2016 RAF_RS02360 2ec3804084bc7585d97bbac4f3b21e7a 377 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 28 361 3.9E-89 T 21-04-2016 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain RAF_RS02360 2ec3804084bc7585d97bbac4f3b21e7a 377 PANTHER PTHR18964 1 376 4.7E-154 T 21-04-2016 RAF_RS02360 2ec3804084bc7585d97bbac4f3b21e7a 377 Gene3D G3DSA:3.40.50.2000 197 365 8.8E-61 T 21-04-2016 RAF_RS02360 2ec3804084bc7585d97bbac4f3b21e7a 377 SUPERFAMILY SSF53756 1 375 2.83E-108 T 21-04-2016 RAF_RS03470 4253b47cd895d2a2318ad6019b407f0b 426 Gene3D G3DSA:3.40.1190.10 10 285 8.2E-85 T 21-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RAF_RS03470 4253b47cd895d2a2318ad6019b407f0b 426 Gene3D G3DSA:3.90.190.20 301 426 4.7E-19 T 21-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RAF_RS03470 4253b47cd895d2a2318ad6019b407f0b 426 Pfam PF08245 Mur ligase middle domain 42 260 3.7E-8 T 21-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RAF_RS03470 4253b47cd895d2a2318ad6019b407f0b 426 SUPERFAMILY SSF53623 13 284 7.67E-85 T 21-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RAF_RS03470 4253b47cd895d2a2318ad6019b407f0b 426 PIRSF PIRSF001563 7 426 4.1E-108 T 21-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 RAF_RS03470 4253b47cd895d2a2318ad6019b407f0b 426 PANTHER PTHR11136 12 426 2.1E-110 T 21-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 RAF_RS03470 4253b47cd895d2a2318ad6019b407f0b 426 SUPERFAMILY SSF53244 301 426 2.22E-18 T 21-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RAF_RS03470 4253b47cd895d2a2318ad6019b407f0b 426 PANTHER PTHR11136:SF0 12 426 2.1E-110 T 21-04-2016 RAF_RS03470 4253b47cd895d2a2318ad6019b407f0b 426 TIGRFAM TIGR01499 folC: bifunctional protein FolC 19 426 2.9E-124 T 21-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 RAF_RS03470 4253b47cd895d2a2318ad6019b407f0b 426 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 134 149 - T 21-04-2016 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 RAF_RS00325 c79d67debe7315370416120d11134fd9 103 PANTHER PTHR26402:SF292 1 98 2.5E-14 T 21-04-2016 RAF_RS00325 c79d67debe7315370416120d11134fd9 103 Gene3D G3DSA:1.10.10.10 9 98 5.4E-20 T 21-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RAF_RS00325 c79d67debe7315370416120d11134fd9 103 SUPERFAMILY SSF46894 8 98 1.98E-18 T 21-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RAF_RS00325 c79d67debe7315370416120d11134fd9 103 SMART SM00862 31 103 1.6E-4 T 21-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAF_RS00325 c79d67debe7315370416120d11134fd9 103 PANTHER PTHR26402 1 98 2.5E-14 T 21-04-2016 RAF_RS00325 c79d67debe7315370416120d11134fd9 103 Pfam PF00486 Transcriptional regulatory protein, C terminal 33 98 8.4E-15 T 21-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RAF_RS00635 d1709e671d60150c5a1d2c8e1f20a02f 251 PRINTS PR01805 VacJ lipoprotein signature 61 77 1.3E-27 T 21-04-2016 IPR007428 MlaA lipoprotein GO:0016020 RAF_RS00635 d1709e671d60150c5a1d2c8e1f20a02f 251 PRINTS PR01805 VacJ lipoprotein signature 44 57 1.3E-27 T 21-04-2016 IPR007428 MlaA lipoprotein GO:0016020 RAF_RS00635 d1709e671d60150c5a1d2c8e1f20a02f 251 PRINTS PR01805 VacJ lipoprotein signature 112 129 1.3E-27 T 21-04-2016 IPR007428 MlaA lipoprotein GO:0016020 RAF_RS00635 d1709e671d60150c5a1d2c8e1f20a02f 251 PRINTS PR01805 VacJ lipoprotein signature 148 165 1.3E-27 T 21-04-2016 IPR007428 MlaA lipoprotein GO:0016020 RAF_RS00635 d1709e671d60150c5a1d2c8e1f20a02f 251 PANTHER PTHR30035 27 238 1.6E-39 T 21-04-2016 IPR007428 MlaA lipoprotein GO:0016020 RAF_RS00635 d1709e671d60150c5a1d2c8e1f20a02f 251 Pfam PF04333 MlaA lipoprotein 43 235 2.1E-61 T 21-04-2016 IPR007428 MlaA lipoprotein GO:0016020 RAF_RS05250 5a6bea272bb44965e11cbc59f4790bae 95 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 51 64 - T 21-04-2016 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 RAF_RS05250 5a6bea272bb44965e11cbc59f4790bae 95 SUPERFAMILY SSF53850 20 76 3.8E-6 T 21-04-2016 RAF_RS05250 5a6bea272bb44965e11cbc59f4790bae 95 Gene3D G3DSA:3.40.190.10 22 88 1.1E-7 T 21-04-2016 RAF_RS06015 f87321a753c137badb8865914aad319e 81 PANTHER PTHR20863 1 76 1.1E-17 T 21-04-2016 RAF_RS06015 f87321a753c137badb8865914aad319e 81 Hamap MF_01217 Acyl carrier protein [acpP]. 6 80 19.928 T 21-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 RAF_RS06015 f87321a753c137badb8865914aad319e 81 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 38 78 9.0E-16 T 21-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 RAF_RS06015 f87321a753c137badb8865914aad319e 81 Pfam PF00550 Phosphopantetheine attachment site 9 76 8.0E-13 T 21-04-2016 IPR009081 Phosphopantetheine binding ACP domain RAF_RS06015 f87321a753c137badb8865914aad319e 81 Gene3D G3DSA:1.10.1200.10 3 80 1.1E-27 T 21-04-2016 IPR009081 Phosphopantetheine binding ACP domain RAF_RS06015 f87321a753c137badb8865914aad319e 81 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 5 80 4.8E-34 T 21-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 RAF_RS06015 f87321a753c137badb8865914aad319e 81 SUPERFAMILY SSF47336 4 80 2.49E-21 T 21-04-2016 IPR009081 Phosphopantetheine binding ACP domain RAF_RS06435 0a0e6cc51e835e1c4574e53804f5467f 215 Gene3D G3DSA:3.90.950.10 8 198 9.6E-56 T 21-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like RAF_RS06435 0a0e6cc51e835e1c4574e53804f5467f 215 PIRSF PIRSF006305 1 202 8.7E-49 T 21-04-2016 IPR003697 Maf-like protein GO:0005737 RAF_RS06435 0a0e6cc51e835e1c4574e53804f5467f 215 SUPERFAMILY SSF52972 7 194 1.77E-52 T 21-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like RAF_RS06435 0a0e6cc51e835e1c4574e53804f5467f 215 Hamap MF_00528 Septum formation protein Maf [maf]. 9 200 29.446 T 21-04-2016 IPR003697 Maf-like protein GO:0005737 RAF_RS06435 0a0e6cc51e835e1c4574e53804f5467f 215 TIGRFAM TIGR00172 maf: septum formation protein Maf 9 193 1.2E-41 T 21-04-2016 IPR003697 Maf-like protein GO:0005737 RAF_RS06435 0a0e6cc51e835e1c4574e53804f5467f 215 Pfam PF02545 Maf-like protein 10 195 2.8E-47 T 21-04-2016 IPR003697 Maf-like protein GO:0005737 RAF_RS02955 910f011bb38bdf257452b3639b20ea5a 125 Gene3D G3DSA:2.20.200.10 42 123 2.7E-25 T 21-04-2016 RAF_RS02955 910f011bb38bdf257452b3639b20ea5a 125 SUPERFAMILY SSF56954 2 123 3.53E-24 T 21-04-2016 RAF_RS02955 910f011bb38bdf257452b3639b20ea5a 125 PANTHER PTHR30203 1 125 2.7E-22 T 21-04-2016 RAF_RS02955 910f011bb38bdf257452b3639b20ea5a 125 PANTHER PTHR30203:SF3 1 125 2.7E-22 T 21-04-2016 RAF_RS02955 910f011bb38bdf257452b3639b20ea5a 125 Pfam PF02321 Outer membrane efflux protein 51 124 2.1E-8 T 21-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 RAF_RS01525 d238efe894a1aaf914a11f6fcc9eeed0 236 SUPERFAMILY SSF56104 11 234 2.35E-50 T 21-04-2016 RAF_RS01525 d238efe894a1aaf914a11f6fcc9eeed0 236 PANTHER PTHR11609:SF2 1 233 9.0E-54 T 21-04-2016 RAF_RS01525 d238efe894a1aaf914a11f6fcc9eeed0 236 PANTHER PTHR11609 1 233 9.0E-54 T 21-04-2016 RAF_RS01525 d238efe894a1aaf914a11f6fcc9eeed0 236 Gene3D G3DSA:3.30.200.20 2 88 5.1E-22 T 21-04-2016 RAF_RS01525 d238efe894a1aaf914a11f6fcc9eeed0 236 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 2 235 24.316 T 21-04-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 RAF_RS01525 d238efe894a1aaf914a11f6fcc9eeed0 236 Gene3D G3DSA:3.30.470.20 89 212 2.7E-31 T 21-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RAF_RS01525 d238efe894a1aaf914a11f6fcc9eeed0 236 Pfam PF01259 SAICAR synthetase 3 208 3.6E-33 T 21-04-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 RAF_RS02855 ea4786c31dd2e53ffe1b1c8a88258203 315 TIGRFAM TIGR02866 CoxB: cytochrome c oxidase, subunit II 81 297 3.5E-63 T 21-04-2016 IPR014222 Cytochrome c oxidase, subunit II GO:0016021|GO:0016491 RAF_RS02855 ea4786c31dd2e53ffe1b1c8a88258203 315 PANTHER PTHR22888 31 299 6.6E-117 T 21-04-2016 RAF_RS02855 ea4786c31dd2e53ffe1b1c8a88258203 315 Gene3D G3DSA:2.60.40.420 167 299 1.0E-57 T 21-04-2016 IPR008972 Cupredoxin RAF_RS02855 ea4786c31dd2e53ffe1b1c8a88258203 315 Gene3D G3DSA:1.10.287.90 73 164 2.6E-32 T 21-04-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 RAF_RS02855 ea4786c31dd2e53ffe1b1c8a88258203 315 PRINTS PR01166 Cytochrome c oxidase subunit II signature 270 287 2.3E-52 T 21-04-2016 RAF_RS02855 ea4786c31dd2e53ffe1b1c8a88258203 315 PRINTS PR01166 Cytochrome c oxidase subunit II signature 208 229 2.3E-52 T 21-04-2016 RAF_RS02855 ea4786c31dd2e53ffe1b1c8a88258203 315 PRINTS PR01166 Cytochrome c oxidase subunit II signature 143 163 2.3E-52 T 21-04-2016 RAF_RS02855 ea4786c31dd2e53ffe1b1c8a88258203 315 PRINTS PR01166 Cytochrome c oxidase subunit II signature 131 143 2.3E-52 T 21-04-2016 RAF_RS02855 ea4786c31dd2e53ffe1b1c8a88258203 315 PRINTS PR01166 Cytochrome c oxidase subunit II signature 165 184 2.3E-52 T 21-04-2016 RAF_RS02855 ea4786c31dd2e53ffe1b1c8a88258203 315 PRINTS PR01166 Cytochrome c oxidase subunit II signature 232 252 2.3E-52 T 21-04-2016 RAF_RS02855 ea4786c31dd2e53ffe1b1c8a88258203 315 PRINTS PR01166 Cytochrome c oxidase subunit II signature 252 269 2.3E-52 T 21-04-2016 RAF_RS02855 ea4786c31dd2e53ffe1b1c8a88258203 315 SUPERFAMILY SSF49503 165 302 4.15E-58 T 21-04-2016 IPR008972 Cupredoxin RAF_RS02855 ea4786c31dd2e53ffe1b1c8a88258203 315 SUPERFAMILY SSF81464 69 162 1.28E-31 T 21-04-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 RAF_RS02855 ea4786c31dd2e53ffe1b1c8a88258203 315 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 233 281 - T 21-04-2016 IPR001505 Copper centre Cu(A) GO:0005507 RAF_RS02855 ea4786c31dd2e53ffe1b1c8a88258203 315 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 169 288 1.2E-53 T 21-04-2016 IPR002429 Cytochrome c oxidase subunit II C-terminal GO:0004129|GO:0005507|GO:0016020 RAF_RS02855 ea4786c31dd2e53ffe1b1c8a88258203 315 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 71 157 2.3E-27 T 21-04-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 RAF_RS02855 ea4786c31dd2e53ffe1b1c8a88258203 315 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 6 53 6.1E-21 T 21-04-2016 IPR005728 Rickettsial palindromic element RAF_RS00425 cb310f00d13dbfbb696b6ce3dee4d0a6 224 Gene3D G3DSA:3.90.45.10 46 219 1.8E-39 T 21-04-2016 IPR023635 Peptide deformylase RAF_RS00425 cb310f00d13dbfbb696b6ce3dee4d0a6 224 PIRSF PIRSF004749 19 224 4.9E-49 T 21-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RAF_RS00425 cb310f00d13dbfbb696b6ce3dee4d0a6 224 SUPERFAMILY SSF56420 36 207 1.7E-39 T 21-04-2016 IPR023635 Peptide deformylase RAF_RS00425 cb310f00d13dbfbb696b6ce3dee4d0a6 224 Hamap MF_00163 Peptide deformylase [def]. 38 212 22.929 T 21-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RAF_RS00425 cb310f00d13dbfbb696b6ce3dee4d0a6 224 PRINTS PR01576 Peptide deformylase signature 152 170 4.4E-17 T 21-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RAF_RS00425 cb310f00d13dbfbb696b6ce3dee4d0a6 224 PRINTS PR01576 Peptide deformylase signature 171 200 4.4E-17 T 21-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RAF_RS00425 cb310f00d13dbfbb696b6ce3dee4d0a6 224 PRINTS PR01576 Peptide deformylase signature 71 100 4.4E-17 T 21-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RAF_RS00425 cb310f00d13dbfbb696b6ce3dee4d0a6 224 PRINTS PR01576 Peptide deformylase signature 140 151 4.4E-17 T 21-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RAF_RS00425 cb310f00d13dbfbb696b6ce3dee4d0a6 224 Pfam PF01327 Polypeptide deformylase 45 202 2.1E-36 T 21-04-2016 IPR023635 Peptide deformylase RAF_RS00425 cb310f00d13dbfbb696b6ce3dee4d0a6 224 PANTHER PTHR10458 79 214 3.6E-34 T 21-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RAF_RS06565 a6193976b17fd284339f032aec8a8030 233 PANTHER PTHR24220:SF466 7 231 1.5E-70 T 21-04-2016 RAF_RS06565 a6193976b17fd284339f032aec8a8030 233 SMART SM00382 30 206 8.0E-11 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS06565 a6193976b17fd284339f032aec8a8030 233 PANTHER PTHR24220 7 231 1.5E-70 T 21-04-2016 RAF_RS06565 a6193976b17fd284339f032aec8a8030 233 Gene3D G3DSA:3.40.50.300 3 212 3.1E-55 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06565 a6193976b17fd284339f032aec8a8030 233 SUPERFAMILY SSF52540 3 215 2.48E-53 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06565 a6193976b17fd284339f032aec8a8030 233 ProSitePatterns PS00211 ABC transporters family signature. 123 137 - T 21-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAF_RS06565 a6193976b17fd284339f032aec8a8030 233 Pfam PF00005 ABC transporter 22 150 1.1E-28 T 21-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAF_RS03790 83819f23a3dd3bc5bcc9607a5e4356bc 501 PANTHER PTHR31187:SF1 9 499 2.8E-124 T 21-04-2016 RAF_RS03790 83819f23a3dd3bc5bcc9607a5e4356bc 501 TIGRFAM TIGR00769 AAA: ADP/ATP carrier protein family 18 496 9.5E-144 T 21-04-2016 IPR004667 ADP/ATP carrier protein GO:0005471|GO:0005524|GO:0006810|GO:0016021 RAF_RS03790 83819f23a3dd3bc5bcc9607a5e4356bc 501 Pfam PF03219 TLC ATP/ADP transporter 6 496 2.8E-202 T 21-04-2016 IPR004667 ADP/ATP carrier protein GO:0005471|GO:0005524|GO:0006810|GO:0016021 RAF_RS03790 83819f23a3dd3bc5bcc9607a5e4356bc 501 PANTHER PTHR31187 9 499 2.8E-124 T 21-04-2016 IPR004667 ADP/ATP carrier protein GO:0005471|GO:0005524|GO:0006810|GO:0016021 RAF_RS00840 50eda7829a2db65f54edd81f86d0b160 348 SUPERFAMILY SSF53756 1 346 2.41E-34 T 21-04-2016 RAF_RS00840 50eda7829a2db65f54edd81f86d0b160 348 Pfam PF06258 Mitochondrial fission ELM1 12 343 5.5E-90 T 21-04-2016 IPR009367 Mitochondrial fission protein ELM1-like RAF_RS00840 50eda7829a2db65f54edd81f86d0b160 348 PANTHER PTHR33986 63 345 5.8E-28 T 21-04-2016 RAF_RS00840 50eda7829a2db65f54edd81f86d0b160 348 PANTHER PTHR33986:SF2 63 345 5.8E-28 T 21-04-2016 RAF_RS06080 e3f3d65cccbf590e1cba78e2d1706a29 80 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 34 80 1.4E-25 T 21-04-2016 IPR005728 Rickettsial palindromic element RAF_RS00795 8f313437ff39c49e9a032d69b13e2e42 308 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 113 286 6.2E-62 T 21-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RAF_RS00795 8f313437ff39c49e9a032d69b13e2e42 308 Pfam PF07549 SecD/SecF GG Motif 37 63 1.5E-8 T 21-04-2016 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site RAF_RS00795 8f313437ff39c49e9a032d69b13e2e42 308 SUPERFAMILY SSF82866 110 302 4.32E-43 T 21-04-2016 RAF_RS00795 8f313437ff39c49e9a032d69b13e2e42 308 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 44 289 3.6E-90 T 21-04-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 RAF_RS00795 8f313437ff39c49e9a032d69b13e2e42 308 Pfam PF02355 Protein export membrane protein 118 298 2.7E-72 T 21-04-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial RAF_RS00795 8f313437ff39c49e9a032d69b13e2e42 308 Gene3D G3DSA:1.20.1640.10 115 304 1.3E-33 T 21-04-2016 RAF_RS00795 8f313437ff39c49e9a032d69b13e2e42 308 PRINTS PR01755 Bacterial translocase SecF protein signature 42 57 3.82E-31 T 21-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RAF_RS00795 8f313437ff39c49e9a032d69b13e2e42 308 PRINTS PR01755 Bacterial translocase SecF protein signature 157 171 3.82E-31 T 21-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RAF_RS00795 8f313437ff39c49e9a032d69b13e2e42 308 PRINTS PR01755 Bacterial translocase SecF protein signature 237 252 3.82E-31 T 21-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RAF_RS00795 8f313437ff39c49e9a032d69b13e2e42 308 PRINTS PR01755 Bacterial translocase SecF protein signature 205 223 3.82E-31 T 21-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RAF_RS00795 8f313437ff39c49e9a032d69b13e2e42 308 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 15 300 27.367 T 21-04-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 RAF_RS00795 8f313437ff39c49e9a032d69b13e2e42 308 PANTHER PTHR30081 5 300 6.1E-76 T 21-04-2016 RAF_RS06160 a7c9d919a5cf55ef1995b8451251af32 425 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 107 5.8E-20 T 21-04-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|UniPathway: UPA00906 RAF_RS06160 a7c9d919a5cf55ef1995b8451251af32 425 Gene3D G3DSA:3.30.930.10 105 417 7.9E-128 T 21-04-2016 RAF_RS06160 a7c9d919a5cf55ef1995b8451251af32 425 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 419 38.621 T 21-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RAF_RS06160 a7c9d919a5cf55ef1995b8451251af32 425 Gene3D G3DSA:1.10.287.40 1 100 3.6E-16 T 21-04-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|UniPathway: UPA00906 RAF_RS06160 a7c9d919a5cf55ef1995b8451251af32 425 SUPERFAMILY SSF46589 1 112 7.85E-20 T 21-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 RAF_RS06160 a7c9d919a5cf55ef1995b8451251af32 425 PANTHER PTHR11778:SF0 1 420 1.8E-173 T 21-04-2016 RAF_RS06160 a7c9d919a5cf55ef1995b8451251af32 425 PIRSF PIRSF001529 1 423 4.2E-155 T 21-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RAF_RS06160 a7c9d919a5cf55ef1995b8451251af32 425 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 222 397 1.4E-33 T 21-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS06160 a7c9d919a5cf55ef1995b8451251af32 425 SUPERFAMILY SSF55681 116 415 3.8E-88 T 21-04-2016 RAF_RS06160 a7c9d919a5cf55ef1995b8451251af32 425 PRINTS PR00981 Seryl-tRNA synthetase signature 348 364 3.4E-33 T 21-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RAF_RS06160 a7c9d919a5cf55ef1995b8451251af32 425 PRINTS PR00981 Seryl-tRNA synthetase signature 273 286 3.4E-33 T 21-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RAF_RS06160 a7c9d919a5cf55ef1995b8451251af32 425 PRINTS PR00981 Seryl-tRNA synthetase signature 330 346 3.4E-33 T 21-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RAF_RS06160 a7c9d919a5cf55ef1995b8451251af32 425 PRINTS PR00981 Seryl-tRNA synthetase signature 261 273 3.4E-33 T 21-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RAF_RS06160 a7c9d919a5cf55ef1995b8451251af32 425 PRINTS PR00981 Seryl-tRNA synthetase signature 313 326 3.4E-33 T 21-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RAF_RS06160 a7c9d919a5cf55ef1995b8451251af32 425 PANTHER PTHR11778 1 420 1.8E-173 T 21-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RAF_RS06160 a7c9d919a5cf55ef1995b8451251af32 425 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 414 1.5E-146 T 21-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 RAF_RS06310 be938f182957878877ac4bb87c303900 790 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 66 718 5.9E-203 T 21-04-2016 RAF_RS06310 be938f182957878877ac4bb87c303900 790 Pfam PF00912 Transglycosylase 56 233 2.5E-58 T 21-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 RAF_RS06310 be938f182957878877ac4bb87c303900 790 Gene3D G3DSA:1.10.3810.10 56 236 2.2E-67 T 21-04-2016 RAF_RS06310 be938f182957878877ac4bb87c303900 790 PANTHER PTHR32282 11 316 1.4E-215 T 21-04-2016 RAF_RS06310 be938f182957878877ac4bb87c303900 790 PANTHER PTHR32282 625 755 1.4E-215 T 21-04-2016 RAF_RS06310 be938f182957878877ac4bb87c303900 790 PANTHER PTHR32282 413 602 1.4E-215 T 21-04-2016 RAF_RS06310 be938f182957878877ac4bb87c303900 790 SUPERFAMILY SSF56601 414 747 5.32E-118 T 21-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RAF_RS06310 be938f182957878877ac4bb87c303900 790 SUPERFAMILY SSF56601 215 237 5.32E-118 T 21-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RAF_RS06310 be938f182957878877ac4bb87c303900 790 SUPERFAMILY SSF56601 266 319 5.32E-118 T 21-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RAF_RS06310 be938f182957878877ac4bb87c303900 790 Pfam PF17092 Penicillin-binding protein OB-like domain 323 417 4.9E-16 T 21-04-2016 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00230+2.4.2.-|KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00514+2.4.2.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.-|UniPathway: UPA00219 RAF_RS06310 be938f182957878877ac4bb87c303900 790 Pfam PF00905 Penicillin binding protein transpeptidase domain 419 713 1.2E-33 T 21-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RAF_RS06310 be938f182957878877ac4bb87c303900 790 Gene3D G3DSA:2.40.50.140 353 413 6.3E-6 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS06310 be938f182957878877ac4bb87c303900 790 SUPERFAMILY SSF53955 43 257 2.81E-71 T 21-04-2016 IPR023346 Lysozyme-like domain RAF_RS06310 be938f182957878877ac4bb87c303900 790 PANTHER PTHR32282:SF5 11 316 1.4E-215 T 21-04-2016 RAF_RS06310 be938f182957878877ac4bb87c303900 790 PANTHER PTHR32282:SF5 625 755 1.4E-215 T 21-04-2016 RAF_RS06310 be938f182957878877ac4bb87c303900 790 PANTHER PTHR32282:SF5 413 602 1.4E-215 T 21-04-2016 RAF_RS06310 be938f182957878877ac4bb87c303900 790 Gene3D G3DSA:3.40.710.10 414 756 9.5E-124 T 21-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RAF_RS06310 be938f182957878877ac4bb87c303900 790 Gene3D G3DSA:3.40.710.10 237 319 9.5E-124 T 21-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RAF_RS05835 42f64640a6dc6dd1f056edd53f075a91 216 Pfam PF02230 Phospholipase/Carboxylesterase 6 212 4.7E-60 T 21-04-2016 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 RAF_RS05835 42f64640a6dc6dd1f056edd53f075a91 216 PANTHER PTHR10655 7 211 1.7E-22 T 21-04-2016 RAF_RS05835 42f64640a6dc6dd1f056edd53f075a91 216 PANTHER PTHR10655:SF17 7 211 1.7E-22 T 21-04-2016 RAF_RS05835 42f64640a6dc6dd1f056edd53f075a91 216 SUPERFAMILY SSF53474 13 210 8.86E-30 T 21-04-2016 IPR029058 Alpha/Beta hydrolase fold RAF_RS05835 42f64640a6dc6dd1f056edd53f075a91 216 Gene3D G3DSA:3.40.50.1820 11 211 5.1E-30 T 21-04-2016 IPR029058 Alpha/Beta hydrolase fold RAF_RS01145 b5079e3f7d8bbe1f80e3473b0154506b 186 PANTHER PTHR11757:SF13 60 185 1.9E-18 T 21-04-2016 RAF_RS01145 b5079e3f7d8bbe1f80e3473b0154506b 186 SUPERFAMILY SSF50993 57 172 1.26E-7 T 21-04-2016 RAF_RS01145 b5079e3f7d8bbe1f80e3473b0154506b 186 PANTHER PTHR11757 60 185 1.9E-18 T 21-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 RAF_RS01145 b5079e3f7d8bbe1f80e3473b0154506b 186 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 58 180 1.3E-5 T 21-04-2016 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 RAF_RS04025 13f478d8b5eacefb285ec2ccd1c2d0fd 102 PANTHER PTHR30522 2 100 7.8E-14 T 21-04-2016 RAF_RS04025 13f478d8b5eacefb285ec2ccd1c2d0fd 102 SUPERFAMILY SSF101386 5 71 5.98E-12 T 21-04-2016 RAF_RS04025 13f478d8b5eacefb285ec2ccd1c2d0fd 102 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 3 63 1.5E-7 T 21-04-2016 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core RAF_RS04025 13f478d8b5eacefb285ec2ccd1c2d0fd 102 PANTHER PTHR30522:SF0 2 100 7.8E-14 T 21-04-2016 IPR011551 NTP pyrophosphohydrolase MazG RAF_RS04025 13f478d8b5eacefb285ec2ccd1c2d0fd 102 Gene3D G3DSA:1.10.287.1080 6 58 3.9E-5 T 21-04-2016 RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 Pfam PF03764 Elongation factor G, domain IV 478 605 2.3E-39 T 21-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 10 180 1.2E-34 T 21-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 SUPERFAMILY SSF54211 481 607 3.79E-38 T 21-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 Pfam PF00679 Elongation factor G C-terminus 609 694 2.4E-32 T 21-04-2016 IPR000640 Translation elongation factor EFG, V domain RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 Gene3D G3DSA:3.40.50.300 4 284 2.1E-108 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 Pfam PF14492 Elongation Factor G, domain II 403 476 1.2E-32 T 21-04-2016 IPR009022 Elongation factor G, III-V domain RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 SUPERFAMILY SSF52540 6 281 1.12E-111 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.3E-15 T 21-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.3E-15 T 21-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 PRINTS PR00315 GTP-binding elongation factor signature 12 25 1.3E-15 T 21-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.3E-15 T 21-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 PRINTS PR00315 GTP-binding elongation factor signature 130 139 1.3E-15 T 21-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 Hamap MF_00054_B Elongation factor G [fusA]. 6 699 109.032 T 21-04-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 SMART SM00838 608 695 1.0E-51 T 21-04-2016 IPR000640 Translation elongation factor EFG, V domain RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 PANTHER PTHR23115 302 699 0.0 T 21-04-2016 RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 PANTHER PTHR23115 4 177 0.0 T 21-04-2016 RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 PANTHER PTHR23115 254 282 0.0 T 21-04-2016 RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 SUPERFAMILY SSF54980 403 480 7.91E-24 T 21-04-2016 IPR009022 Elongation factor G, III-V domain RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 PANTHER PTHR23115:SF66 302 699 0.0 T 21-04-2016 RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 PANTHER PTHR23115:SF66 4 177 0.0 T 21-04-2016 RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 PANTHER PTHR23115:SF66 254 282 0.0 T 21-04-2016 RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 698 0.0 T 21-04-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 Gene3D G3DSA:3.30.70.870 405 479 8.8E-37 T 21-04-2016 RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 Gene3D G3DSA:3.30.70.240 611 696 6.1E-34 T 21-04-2016 IPR000640 Translation elongation factor EFG, V domain RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 Pfam PF00009 Elongation factor Tu GTP binding domain 9 281 8.7E-71 T 21-04-2016 RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 Gene3D G3DSA:3.30.230.10 483 610 1.2E-41 T 21-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 SUPERFAMILY SSF54980 611 695 1.87E-30 T 21-04-2016 IPR009022 Elongation factor G, III-V domain RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 Gene3D G3DSA:2.40.30.10 306 404 6.9E-36 T 21-04-2016 RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 21-04-2016 IPR031157 Tr-type G domain, conserved site RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 SUPERFAMILY SSF50447 304 401 4.29E-34 T 21-04-2016 IPR009000 Translation protein, beta-barrel domain RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 SUPERFAMILY SSF50447 249 274 4.29E-34 T 21-04-2016 IPR009000 Translation protein, beta-barrel domain RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 Pfam PF03144 Elongation factor Tu domain 2 323 389 1.0E-14 T 21-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 RAF_RS00900 82dad71ea99202f35c30079866d9efbb 699 SMART SM00889 479 606 3.2E-61 T 21-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 RAF_RS01745 75ed8fe4fc40cda26ce99d8a4f81dc7d 411 Gene3D G3DSA:3.30.1490.110 85 150 1.1E-20 T 21-04-2016 RAF_RS01745 75ed8fe4fc40cda26ce99d8a4f81dc7d 411 Pfam PF02491 SHS2 domain inserted in FTSA 83 158 5.4E-18 T 21-04-2016 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 RAF_RS01745 75ed8fe4fc40cda26ce99d8a4f81dc7d 411 SUPERFAMILY SSF53067 195 377 8.91E-31 T 21-04-2016 RAF_RS01745 75ed8fe4fc40cda26ce99d8a4f81dc7d 411 SUPERFAMILY SSF53067 8 194 7.28E-41 T 21-04-2016 RAF_RS01745 75ed8fe4fc40cda26ce99d8a4f81dc7d 411 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 8 378 2.7E-126 T 21-04-2016 IPR020823 Cell division protein FtsA GO:0007049 RAF_RS01745 75ed8fe4fc40cda26ce99d8a4f81dc7d 411 PANTHER PTHR32432 1 378 1.0E-82 T 21-04-2016 RAF_RS01745 75ed8fe4fc40cda26ce99d8a4f81dc7d 411 PIRSF PIRSF003101 1 411 4.9E-103 T 21-04-2016 IPR020823 Cell division protein FtsA GO:0007049 RAF_RS01745 75ed8fe4fc40cda26ce99d8a4f81dc7d 411 Gene3D G3DSA:3.30.420.40 151 205 2.9E-8 T 21-04-2016 RAF_RS01745 75ed8fe4fc40cda26ce99d8a4f81dc7d 411 Gene3D G3DSA:3.30.420.40 4 81 2.9E-8 T 21-04-2016 RAF_RS01745 75ed8fe4fc40cda26ce99d8a4f81dc7d 411 PANTHER PTHR32432:SF4 1 378 1.0E-82 T 21-04-2016 RAF_RS01745 75ed8fe4fc40cda26ce99d8a4f81dc7d 411 SMART SM00842 8 193 3.1E-61 T 21-04-2016 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 RAF_RS01745 75ed8fe4fc40cda26ce99d8a4f81dc7d 411 Gene3D G3DSA:3.90.640.10 232 298 2.5E-13 T 21-04-2016 RAF_RS01745 75ed8fe4fc40cda26ce99d8a4f81dc7d 411 Hamap MF_02033 Cell division protein FtsA [ftsA]. 4 411 23.365 T 21-04-2016 IPR020823 Cell division protein FtsA GO:0007049 RAF_RS01745 75ed8fe4fc40cda26ce99d8a4f81dc7d 411 Pfam PF14450 Cell division protein FtsA 205 359 1.7E-15 T 21-04-2016 RAF_RS01745 75ed8fe4fc40cda26ce99d8a4f81dc7d 411 Gene3D G3DSA:3.30.420.40 206 231 5.5E-21 T 21-04-2016 RAF_RS01745 75ed8fe4fc40cda26ce99d8a4f81dc7d 411 Gene3D G3DSA:3.30.420.40 299 353 5.5E-21 T 21-04-2016 RAF_RS01110 40cf17d48bba259b5fc5575a1598a715 110 Gene3D G3DSA:4.10.520.10 12 110 2.9E-31 T 21-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RAF_RS01110 40cf17d48bba259b5fc5575a1598a715 110 SUPERFAMILY SSF47729 12 110 5.45E-24 T 21-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RAF_RS01110 40cf17d48bba259b5fc5575a1598a715 110 Pfam PF00216 Bacterial DNA-binding protein 12 110 9.8E-26 T 21-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RAF_RS01110 40cf17d48bba259b5fc5575a1598a715 110 PANTHER PTHR33175 12 110 1.0E-28 T 21-04-2016 RAF_RS01110 40cf17d48bba259b5fc5575a1598a715 110 PRINTS PR01727 Prokaryotic integration host factor signature 78 91 1.8E-14 T 21-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RAF_RS01110 40cf17d48bba259b5fc5575a1598a715 110 PRINTS PR01727 Prokaryotic integration host factor signature 94 108 1.8E-14 T 21-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RAF_RS01110 40cf17d48bba259b5fc5575a1598a715 110 PRINTS PR01727 Prokaryotic integration host factor signature 60 75 1.8E-14 T 21-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RAF_RS01110 40cf17d48bba259b5fc5575a1598a715 110 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 66 85 - T 21-04-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 RAF_RS01110 40cf17d48bba259b5fc5575a1598a715 110 SMART SM00411 12 110 1.4E-39 T 21-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RAF_RS00810 82ab2d6b1e6064ebe36cdb256cdea0ca 227 SUPERFAMILY SSF69065 2 149 9.07E-44 T 21-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 RAF_RS00810 82ab2d6b1e6064ebe36cdb256cdea0ca 227 Hamap MF_00104 Ribonuclease 3 [rnc]. 7 221 26.942 T 21-04-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 RAF_RS00810 82ab2d6b1e6064ebe36cdb256cdea0ca 227 Pfam PF00035 Double-stranded RNA binding motif 159 223 4.5E-10 T 21-04-2016 IPR014720 Double-stranded RNA-binding domain RAF_RS00810 82ab2d6b1e6064ebe36cdb256cdea0ca 227 PANTHER PTHR11207 4 225 9.6E-55 T 21-04-2016 RAF_RS00810 82ab2d6b1e6064ebe36cdb256cdea0ca 227 ProSitePatterns PS00517 Ribonuclease III family signature. 43 51 - T 21-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 RAF_RS00810 82ab2d6b1e6064ebe36cdb256cdea0ca 227 Gene3D G3DSA:3.30.160.20 158 224 3.8E-20 T 21-04-2016 IPR014720 Double-stranded RNA-binding domain RAF_RS00810 82ab2d6b1e6064ebe36cdb256cdea0ca 227 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 7 224 3.9E-73 T 21-04-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 RAF_RS00810 82ab2d6b1e6064ebe36cdb256cdea0ca 227 SMART SM00358 159 225 2.1E-20 T 21-04-2016 IPR014720 Double-stranded RNA-binding domain RAF_RS00810 82ab2d6b1e6064ebe36cdb256cdea0ca 227 Pfam PF14622 Ribonuclease-III-like 17 144 1.7E-26 T 21-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 RAF_RS00810 82ab2d6b1e6064ebe36cdb256cdea0ca 227 SUPERFAMILY SSF54768 116 224 6.76E-23 T 21-04-2016 RAF_RS00810 82ab2d6b1e6064ebe36cdb256cdea0ca 227 Gene3D G3DSA:1.10.1520.10 4 150 8.8E-44 T 21-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 RAF_RS00810 82ab2d6b1e6064ebe36cdb256cdea0ca 227 SMART SM00535 19 154 3.4E-49 T 21-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 RAF_RS01010 0c949f460a9efda26545ad96d85233c8 100 PANTHER PTHR15004:SF0 1 100 1.1E-15 T 21-04-2016 RAF_RS01010 0c949f460a9efda26545ad96d85233c8 100 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 2 100 2.6E-19 T 21-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RAF_RS01010 0c949f460a9efda26545ad96d85233c8 100 PANTHER PTHR15004 1 100 1.1E-15 T 21-04-2016 RAF_RS01010 0c949f460a9efda26545ad96d85233c8 100 SUPERFAMILY SSF141000 1 98 8.89E-22 T 21-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RAF_RS01010 0c949f460a9efda26545ad96d85233c8 100 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 18 79 8.3E-11 T 21-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RAF_RS01010 0c949f460a9efda26545ad96d85233c8 100 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 1 100 21.625 T 21-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RAF_RS01570 e1568f7316a62116ded2fd520b70e0bc 138 Pfam PF10859 Protein of unknown function (DUF2660) 23 109 7.2E-48 T 21-04-2016 IPR022589 Protein of unknown function DUF2660 RAF_RS01570 e1568f7316a62116ded2fd520b70e0bc 138 ProDom PD200507 RP222 24 136 3.0E-59 T 21-04-2016 IPR022589 Protein of unknown function DUF2660 RAF_RS03200 589ba98e7f81c3d813c1930de675a532 281 SUPERFAMILY SSF53448 6 230 1.91E-63 T 21-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RAF_RS03200 589ba98e7f81c3d813c1930de675a532 281 PANTHER PTHR22916 4 232 1.4E-58 T 21-04-2016 RAF_RS03200 589ba98e7f81c3d813c1930de675a532 281 Pfam PF00535 Glycosyl transferase family 2 9 121 1.2E-30 T 21-04-2016 IPR001173 Glycosyltransferase 2-like RAF_RS03200 589ba98e7f81c3d813c1930de675a532 281 PANTHER PTHR22916:SF28 4 232 1.4E-58 T 21-04-2016 RAF_RS03200 589ba98e7f81c3d813c1930de675a532 281 Gene3D G3DSA:3.90.550.10 6 228 6.5E-60 T 21-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RAF_RS05460 c12f7f6763a522fb44ca6e809bb3243d 228 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 5 212 1.8E-56 T 21-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 RAF_RS05460 c12f7f6763a522fb44ca6e809bb3243d 228 Pfam PF06508 Queuosine biosynthesis protein QueC 4 219 3.2E-73 T 21-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 RAF_RS05460 c12f7f6763a522fb44ca6e809bb3243d 228 SUPERFAMILY SSF52402 2 227 1.39E-54 T 21-04-2016 RAF_RS05460 c12f7f6763a522fb44ca6e809bb3243d 228 Gene3D G3DSA:3.40.50.620 2 227 1.1E-69 T 21-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS05460 c12f7f6763a522fb44ca6e809bb3243d 228 PIRSF PIRSF006293 1 228 7.9E-78 T 21-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 RAF_RS05460 c12f7f6763a522fb44ca6e809bb3243d 228 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 3 225 48.906 T 21-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 RAF_RS05460 c12f7f6763a522fb44ca6e809bb3243d 228 PANTHER PTHR11587:SF3 2 228 2.5E-88 T 21-04-2016 RAF_RS05460 c12f7f6763a522fb44ca6e809bb3243d 228 PANTHER PTHR11587 2 228 2.5E-88 T 21-04-2016 RAF_RS03575 c030477b67e033600b995d24b9c7d455 248 PANTHER PTHR30283:SF3 2 247 4.7E-75 T 21-04-2016 RAF_RS03575 c030477b67e033600b995d24b9c7d455 248 Hamap MF_00652 UPF0246 protein YaaA [yaaA]. 1 248 32.554 T 21-04-2016 IPR005583 Peroxide stress protein YaaA RAF_RS03575 c030477b67e033600b995d24b9c7d455 248 PANTHER PTHR30283 2 247 4.7E-75 T 21-04-2016 RAF_RS03575 c030477b67e033600b995d24b9c7d455 248 Pfam PF03883 Protein of unknown function (DUF328) 1 236 9.3E-76 T 21-04-2016 IPR005583 Peroxide stress protein YaaA RAF_RS02460 9ef16bfdf66733fdd82376311cc189c9 241 Pfam PF14023 Protein of unknown function (DUF4239) 33 227 1.2E-16 T 21-04-2016 IPR025333 Protein of unknown function DUF4239 RAF_RS00430 21c5316c093221a472f8076d00103641 501 PANTHER PTHR31187:SF1 12 497 6.2E-136 T 21-04-2016 RAF_RS00430 21c5316c093221a472f8076d00103641 501 Pfam PF03219 TLC ATP/ADP transporter 5 489 2.0E-205 T 21-04-2016 IPR004667 ADP/ATP carrier protein GO:0005471|GO:0005524|GO:0006810|GO:0016021 RAF_RS00430 21c5316c093221a472f8076d00103641 501 TIGRFAM TIGR00769 AAA: ADP/ATP carrier protein family 20 489 4.5E-210 T 21-04-2016 IPR004667 ADP/ATP carrier protein GO:0005471|GO:0005524|GO:0006810|GO:0016021 RAF_RS00430 21c5316c093221a472f8076d00103641 501 SUPERFAMILY SSF103473 143 486 4.45E-6 T 21-04-2016 IPR020846 Major facilitator superfamily domain RAF_RS00430 21c5316c093221a472f8076d00103641 501 SUPERFAMILY SSF103473 25 112 4.45E-6 T 21-04-2016 IPR020846 Major facilitator superfamily domain RAF_RS00430 21c5316c093221a472f8076d00103641 501 PANTHER PTHR31187 12 497 6.2E-136 T 21-04-2016 IPR004667 ADP/ATP carrier protein GO:0005471|GO:0005524|GO:0006810|GO:0016021 RAF_RS01150 ca9caf9394ed33ac858c08a63e4f1e09 400 SUPERFAMILY SSF102114 13 399 3.92E-97 T 21-04-2016 RAF_RS01150 ca9caf9394ed33ac858c08a63e4f1e09 400 SMART SM00729 21 240 1.4E-49 T 21-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RAF_RS01150 ca9caf9394ed33ac858c08a63e4f1e09 400 PANTHER PTHR13932 6 400 4.6E-149 T 21-04-2016 RAF_RS01150 ca9caf9394ed33ac858c08a63e4f1e09 400 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 23 370 8.7E-88 T 21-04-2016 IPR004559 Coproporphyrinogen III oxidase, oxygen-independent related GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00071+1.3.99.-|KEGG: 00280+1.3.99.-|KEGG: 00281+1.3.99.-|KEGG: 00362+1.3.99.-|KEGG: 00626+1.3.99.-|KEGG: 00930+1.3.99.- RAF_RS01150 ca9caf9394ed33ac858c08a63e4f1e09 400 Pfam PF04055 Radical SAM superfamily 26 194 3.8E-18 T 21-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RAF_RS01150 ca9caf9394ed33ac858c08a63e4f1e09 400 PANTHER PTHR13932:SF5 6 400 4.6E-149 T 21-04-2016 RAF_RS01150 ca9caf9394ed33ac858c08a63e4f1e09 400 Pfam PF06969 HemN C-terminal domain 324 388 2.2E-15 T 21-04-2016 IPR010723 HemN, C-terminal RAF_RS01150 ca9caf9394ed33ac858c08a63e4f1e09 400 Gene3D G3DSA:3.80.30.20 22 256 1.7E-29 T 21-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RAF_RS01610 b8a1ed1ba2b3a82c563cf896bafd3a83 456 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 49 371 1.4E-97 T 21-04-2016 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 RAF_RS01610 b8a1ed1ba2b3a82c563cf896bafd3a83 456 SMART SM00245 168 361 5.3E-90 T 21-04-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 RAF_RS01610 b8a1ed1ba2b3a82c563cf896bafd3a83 456 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 91 162 1.3E-6 T 21-04-2016 IPR001478 PDZ domain GO:0005515 RAF_RS01610 b8a1ed1ba2b3a82c563cf896bafd3a83 456 Gene3D G3DSA:3.30.750.44 50 100 6.0E-8 T 21-04-2016 RAF_RS01610 b8a1ed1ba2b3a82c563cf896bafd3a83 456 Pfam PF03572 Peptidase family S41 193 359 8.9E-57 T 21-04-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 RAF_RS01610 b8a1ed1ba2b3a82c563cf896bafd3a83 456 Gene3D G3DSA:2.30.42.10 101 176 8.0E-22 T 21-04-2016 IPR001478 PDZ domain GO:0005515 RAF_RS01610 b8a1ed1ba2b3a82c563cf896bafd3a83 456 SUPERFAMILY SSF50156 87 177 1.55E-13 T 21-04-2016 IPR001478 PDZ domain GO:0005515 RAF_RS01610 b8a1ed1ba2b3a82c563cf896bafd3a83 456 PANTHER PTHR32060 39 435 1.7E-111 T 21-04-2016 RAF_RS01610 b8a1ed1ba2b3a82c563cf896bafd3a83 456 SMART SM00228 95 166 2.5E-9 T 21-04-2016 IPR001478 PDZ domain GO:0005515 RAF_RS01610 b8a1ed1ba2b3a82c563cf896bafd3a83 456 SUPERFAMILY SSF52096 34 113 2.15E-76 T 21-04-2016 IPR029045 ClpP/crotonase-like domain RAF_RS01610 b8a1ed1ba2b3a82c563cf896bafd3a83 456 SUPERFAMILY SSF52096 187 365 2.15E-76 T 21-04-2016 IPR029045 ClpP/crotonase-like domain RAF_RS01610 b8a1ed1ba2b3a82c563cf896bafd3a83 456 Gene3D G3DSA:3.90.226.10 177 363 4.7E-65 T 21-04-2016 IPR029045 ClpP/crotonase-like domain RAF_RS01610 b8a1ed1ba2b3a82c563cf896bafd3a83 456 Gene3D G3DSA:3.90.226.10 418 447 4.7E-65 T 21-04-2016 IPR029045 ClpP/crotonase-like domain RAF_RS02715 b0a44433ed2b05fb52d90e2f066b4125 426 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 2.2E-13 T 21-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RAF_RS02715 b0a44433ed2b05fb52d90e2f066b4125 426 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 2.2E-13 T 21-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RAF_RS02715 b0a44433ed2b05fb52d90e2f066b4125 426 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 2.2E-13 T 21-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RAF_RS02715 b0a44433ed2b05fb52d90e2f066b4125 426 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 2.2E-13 T 21-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RAF_RS02715 b0a44433ed2b05fb52d90e2f066b4125 426 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 320 4.2E-36 T 21-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS02715 b0a44433ed2b05fb52d90e2f066b4125 426 Hamap MF_01570 Proline--tRNA ligase [proS]. 1 426 57.695 T 21-04-2016 IPR023716 Proline-tRNA ligase, class IIa, type 2 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RAF_RS02715 b0a44433ed2b05fb52d90e2f066b4125 426 Pfam PF03129 Anticodon binding domain 336 425 2.0E-17 T 21-04-2016 IPR004154 Anticodon-binding RAF_RS02715 b0a44433ed2b05fb52d90e2f066b4125 426 SUPERFAMILY SSF55681 10 231 9.95E-90 T 21-04-2016 RAF_RS02715 b0a44433ed2b05fb52d90e2f066b4125 426 SUPERFAMILY SSF55681 268 338 9.95E-90 T 21-04-2016 RAF_RS02715 b0a44433ed2b05fb52d90e2f066b4125 426 PANTHER PTHR11451:SF3 232 426 1.3E-133 T 21-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RAF_RS02715 b0a44433ed2b05fb52d90e2f066b4125 426 PANTHER PTHR11451:SF3 4 216 1.3E-133 T 21-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RAF_RS02715 b0a44433ed2b05fb52d90e2f066b4125 426 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 225 3.0E-102 T 21-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RAF_RS02715 b0a44433ed2b05fb52d90e2f066b4125 426 Gene3D G3DSA:3.40.50.800 332 425 1.1E-22 T 21-04-2016 IPR004154 Anticodon-binding RAF_RS02715 b0a44433ed2b05fb52d90e2f066b4125 426 Gene3D G3DSA:3.30.930.10 11 331 3.6E-93 T 21-04-2016 RAF_RS02715 b0a44433ed2b05fb52d90e2f066b4125 426 PANTHER PTHR11451 232 426 1.3E-133 T 21-04-2016 RAF_RS02715 b0a44433ed2b05fb52d90e2f066b4125 426 PANTHER PTHR11451 4 216 1.3E-133 T 21-04-2016 RAF_RS02715 b0a44433ed2b05fb52d90e2f066b4125 426 SUPERFAMILY SSF52954 324 426 1.26E-25 T 21-04-2016 IPR004154 Anticodon-binding RAF_RS01785 a65455bfda7e4f6bb8a951323eef4915 303 PANTHER PTHR11079 12 302 2.3E-52 T 21-04-2016 RAF_RS01785 a65455bfda7e4f6bb8a951323eef4915 303 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 136 150 - T 21-04-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAF_RS01785 a65455bfda7e4f6bb8a951323eef4915 303 Pfam PF00849 RNA pseudouridylate synthase 97 245 9.2E-31 T 21-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAF_RS01785 a65455bfda7e4f6bb8a951323eef4915 303 Pfam PF01479 S4 domain 12 57 2.9E-7 T 21-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RAF_RS01785 a65455bfda7e4f6bb8a951323eef4915 303 SMART SM00363 11 66 1.0E-9 T 21-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RAF_RS01785 a65455bfda7e4f6bb8a951323eef4915 303 Gene3D G3DSA:3.10.290.10 11 62 1.1E-7 T 21-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RAF_RS01785 a65455bfda7e4f6bb8a951323eef4915 303 SUPERFAMILY SSF55120 92 301 3.84E-51 T 21-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAF_RS01785 a65455bfda7e4f6bb8a951323eef4915 303 PANTHER PTHR11079:SF74 12 302 2.3E-52 T 21-04-2016 RAF_RS01785 a65455bfda7e4f6bb8a951323eef4915 303 SUPERFAMILY SSF55174 9 109 8.64E-9 T 21-04-2016 RAF_RS06195 3a37213f25cf9e33657b61bc10b8086f 107 Pfam PF01381 Helix-turn-helix 49 85 6.9E-9 T 21-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAF_RS06195 3a37213f25cf9e33657b61bc10b8086f 107 Gene3D G3DSA:1.10.260.40 47 98 5.3E-19 T 21-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RAF_RS06195 3a37213f25cf9e33657b61bc10b8086f 107 SUPERFAMILY SSF47413 49 91 1.83E-10 T 21-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RAF_RS06195 3a37213f25cf9e33657b61bc10b8086f 107 PANTHER PTHR36511:SF2 46 105 1.8E-17 T 21-04-2016 RAF_RS06195 3a37213f25cf9e33657b61bc10b8086f 107 PANTHER PTHR36511 46 105 1.8E-17 T 21-04-2016 RAF_RS06195 3a37213f25cf9e33657b61bc10b8086f 107 SMART SM00530 47 101 3.7E-5 T 21-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAF_RS04740 93af851d5eacbf0d85ec5cd6a7fc80a8 203 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 5 184 26.125 T 21-04-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 RAF_RS04740 93af851d5eacbf0d85ec5cd6a7fc80a8 203 Hamap MF_01336 50S ribosomal protein L25 [rplY]. 5 97 21.597 T 21-04-2016 IPR020055 Ribosomal protein L25, short-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 RAF_RS04740 93af851d5eacbf0d85ec5cd6a7fc80a8 203 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 5 94 6.0E-38 T 21-04-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 RAF_RS04740 93af851d5eacbf0d85ec5cd6a7fc80a8 203 SUPERFAMILY SSF50715 4 192 1.73E-53 T 21-04-2016 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: REACT_71 RAF_RS04740 93af851d5eacbf0d85ec5cd6a7fc80a8 203 Pfam PF01386 Ribosomal L25p family 7 94 1.8E-26 T 21-04-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 RAF_RS04740 93af851d5eacbf0d85ec5cd6a7fc80a8 203 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 7 183 4.5E-64 T 21-04-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 RAF_RS04740 93af851d5eacbf0d85ec5cd6a7fc80a8 203 Gene3D G3DSA:2.170.120.20 100 192 2.8E-23 T 21-04-2016 IPR020057 Ribosomal protein L25, beta domain RAF_RS04740 93af851d5eacbf0d85ec5cd6a7fc80a8 203 PANTHER PTHR33284 4 201 4.2E-54 T 21-04-2016 RAF_RS04740 93af851d5eacbf0d85ec5cd6a7fc80a8 203 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 103 183 9.4E-21 T 21-04-2016 IPR020057 Ribosomal protein L25, beta domain RAF_RS04740 93af851d5eacbf0d85ec5cd6a7fc80a8 203 Gene3D G3DSA:2.40.240.10 6 95 2.9E-33 T 21-04-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: REACT_71 RAF_RS00535 2d452e6a031e810a02f867650ee6b0d8 273 Gene3D G3DSA:3.30.1130.10 14 127 1.4E-36 T 21-04-2016 RAF_RS00535 2d452e6a031e810a02f867650ee6b0d8 273 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 273 122.518 T 21-04-2016 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 RAF_RS00535 2d452e6a031e810a02f867650ee6b0d8 273 TIGRFAM TIGR03138 QueF: queuine synthase 4 273 4.7E-108 T 21-04-2016 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 RAF_RS00535 2d452e6a031e810a02f867650ee6b0d8 273 PANTHER PTHR34354 1 272 7.1E-67 T 21-04-2016 RAF_RS00535 2d452e6a031e810a02f867650ee6b0d8 273 Pfam PF14489 QueF-like protein 185 261 1.9E-21 T 21-04-2016 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 RAF_RS00535 2d452e6a031e810a02f867650ee6b0d8 273 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 14 121 5.5E-42 T 21-04-2016 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 RAF_RS00535 2d452e6a031e810a02f867650ee6b0d8 273 PANTHER PTHR34354:SF1 1 272 7.1E-67 T 21-04-2016 RAF_RS00535 2d452e6a031e810a02f867650ee6b0d8 273 PIRSF PIRSF004750 1 273 1.1E-111 T 21-04-2016 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 RAF_RS00535 2d452e6a031e810a02f867650ee6b0d8 273 SUPERFAMILY SSF55620 175 255 1.26E-6 T 21-04-2016 RAF_RS00535 2d452e6a031e810a02f867650ee6b0d8 273 Gene3D G3DSA:3.30.1130.10 137 262 7.2E-42 T 21-04-2016 RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 Gene3D G3DSA:2.40.50.140 205 285 7.0E-29 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 PANTHER PTHR10724:SF6 13 527 5.0E-191 T 21-04-2016 RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 22 533 1.2E-220 T 21-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 SUPERFAMILY SSF50249 442 551 7.15E-20 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 SUPERFAMILY SSF50249 361 452 4.1E-19 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 Gene3D G3DSA:2.40.50.140 286 361 6.4E-27 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 Gene3D G3DSA:2.40.50.140 110 185 1.8E-11 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 Gene3D G3DSA:2.40.50.140 456 534 1.3E-17 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 PANTHER PTHR10724 13 527 5.0E-191 T 21-04-2016 RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 SMART SM00316 288 360 1.3E-22 T 21-04-2016 IPR022967 RNA-binding domain, S1 RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 SMART SM00316 116 184 3.0E-6 T 21-04-2016 IPR022967 RNA-binding domain, S1 RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 SMART SM00316 203 273 4.3E-26 T 21-04-2016 IPR022967 RNA-binding domain, S1 RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 SMART SM00316 375 447 2.4E-20 T 21-04-2016 IPR022967 RNA-binding domain, S1 RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 SMART SM00316 37 100 7.1E-9 T 21-04-2016 IPR022967 RNA-binding domain, S1 RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 SMART SM00316 462 533 6.9E-17 T 21-04-2016 IPR022967 RNA-binding domain, S1 RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 SUPERFAMILY SSF50249 31 125 1.43E-16 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 PRINTS PR00681 Ribosomal protein S1 signature 303 322 1.9E-72 T 21-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 PRINTS PR00681 Ribosomal protein S1 signature 39 57 1.9E-72 T 21-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 PRINTS PR00681 Ribosomal protein S1 signature 57 71 1.9E-72 T 21-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 PRINTS PR00681 Ribosomal protein S1 signature 343 361 1.9E-72 T 21-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 PRINTS PR00681 Ribosomal protein S1 signature 121 137 1.9E-72 T 21-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 PRINTS PR00681 Ribosomal protein S1 signature 225 246 1.9E-72 T 21-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 PRINTS PR00681 Ribosomal protein S1 signature 139 156 1.9E-72 T 21-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 PRINTS PR00681 Ribosomal protein S1 signature 97 116 1.9E-72 T 21-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 PRINTS PR00681 Ribosomal protein S1 signature 168 188 1.9E-72 T 21-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 SUPERFAMILY SSF50249 117 198 2.61E-13 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 SUPERFAMILY SSF50249 268 366 5.67E-25 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 Pfam PF00575 S1 RNA binding domain 376 447 3.3E-13 T 21-04-2016 IPR003029 S1 domain GO:0003676 RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 Pfam PF00575 S1 RNA binding domain 201 273 1.2E-18 T 21-04-2016 IPR003029 S1 domain GO:0003676 RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 Pfam PF00575 S1 RNA binding domain 117 184 8.6E-7 T 21-04-2016 IPR003029 S1 domain GO:0003676 RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 Pfam PF00575 S1 RNA binding domain 287 360 2.8E-18 T 21-04-2016 IPR003029 S1 domain GO:0003676 RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 Pfam PF00575 S1 RNA binding domain 461 533 3.3E-12 T 21-04-2016 IPR003029 S1 domain GO:0003676 RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 PIRSF PIRSF002111 6 547 1.0E-202 T 21-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 Gene3D G3DSA:2.40.50.140 35 109 1.4E-8 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 Gene3D G3DSA:2.40.50.140 371 455 4.0E-23 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS03645 eb7b285e9d3fe6397dfcc48ad5e45958 568 SUPERFAMILY SSF50249 203 290 8.95E-26 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS02520 d447c54b7ebfdcb99aeef85abaaa78e2 306 SUPERFAMILY SSF56349 5 298 1.44E-53 T 21-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RAF_RS02520 d447c54b7ebfdcb99aeef85abaaa78e2 306 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 1 305 26.216 T 21-04-2016 IPR023009 Tyrosine recombinase XerC/XerD RAF_RS02520 d447c54b7ebfdcb99aeef85abaaa78e2 306 Gene3D G3DSA:1.10.443.10 108 297 1.6E-46 T 21-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 RAF_RS02520 d447c54b7ebfdcb99aeef85abaaa78e2 306 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 4 85 3.0E-22 T 21-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 RAF_RS02520 d447c54b7ebfdcb99aeef85abaaa78e2 306 Pfam PF00589 Phage integrase family 110 290 3.1E-38 T 21-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RAF_RS02520 d447c54b7ebfdcb99aeef85abaaa78e2 306 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 1 304 56.972 T 21-04-2016 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 RAF_RS02520 d447c54b7ebfdcb99aeef85abaaa78e2 306 Gene3D G3DSA:1.10.150.130 3 95 5.2E-24 T 21-04-2016 IPR023109 Integrase/recombinase, N-terminal RAF_RS02520 d447c54b7ebfdcb99aeef85abaaa78e2 306 PANTHER PTHR30349 4 306 2.4E-81 T 21-04-2016 RAF_RS02520 d447c54b7ebfdcb99aeef85abaaa78e2 306 PANTHER PTHR30349:SF5 4 306 2.4E-81 T 21-04-2016 RAF_RS00485 4b8609a1a59f983bd621e73fa2a4055e 110 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 91 108 - T 21-04-2016 IPR017870 FeS cluster insertion, C-terminal, conserved site RAF_RS00485 4b8609a1a59f983bd621e73fa2a4055e 110 Gene3D G3DSA:2.60.300.12 2 96 9.5E-26 T 21-04-2016 IPR000361 FeS cluster biogenesis RAF_RS00485 4b8609a1a59f983bd621e73fa2a4055e 110 SUPERFAMILY SSF89360 2 99 9.55E-26 T 21-04-2016 IPR000361 FeS cluster biogenesis RAF_RS00485 4b8609a1a59f983bd621e73fa2a4055e 110 PANTHER PTHR10072 3 110 4.6E-35 T 21-04-2016 RAF_RS00485 4b8609a1a59f983bd621e73fa2a4055e 110 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 3 110 3.2E-34 T 21-04-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 RAF_RS00485 4b8609a1a59f983bd621e73fa2a4055e 110 Pfam PF01521 Iron-sulphur cluster biosynthesis 2 106 2.4E-17 T 21-04-2016 IPR000361 FeS cluster biogenesis RAF_RS00800 2a561d1dec49730ae5090612436b8813 421 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 332 413 1.6E-28 T 21-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 RAF_RS00800 2a561d1dec49730ae5090612436b8813 421 SUPERFAMILY SSF142984 240 324 1.44E-25 T 21-04-2016 RAF_RS00800 2a561d1dec49730ae5090612436b8813 421 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 8 415 3.3E-204 T 21-04-2016 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 RAF_RS00800 2a561d1dec49730ae5090612436b8813 421 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 342 353 - T 21-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 RAF_RS00800 2a561d1dec49730ae5090612436b8813 421 SUPERFAMILY SSF142019 6 239 9.02E-83 T 21-04-2016 RAF_RS00800 2a561d1dec49730ae5090612436b8813 421 SUPERFAMILY SSF140490 325 418 3.53E-34 T 21-04-2016 RAF_RS00800 2a561d1dec49730ae5090612436b8813 421 SMART SM00928 329 374 5.7E-23 T 21-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 RAF_RS00800 2a561d1dec49730ae5090612436b8813 421 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 166 181 - T 21-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 RAF_RS00800 2a561d1dec49730ae5090612436b8813 421 PANTHER PTHR11780 2 416 2.8E-258 T 21-04-2016 RAF_RS00800 2a561d1dec49730ae5090612436b8813 421 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 47 218 5.5E-48 T 21-04-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain RAF_RS00800 2a561d1dec49730ae5090612436b8813 421 Pfam PF10531 SLBB domain 242 291 4.0E-9 T 21-04-2016 IPR019554 Soluble ligand binding domain RAF_RS05595 6931f0a112827481d918bcfa73a44451 361 PANTHER PTHR21148:SF26 1 352 3.9E-152 T 21-04-2016 RAF_RS05595 6931f0a112827481d918bcfa73a44451 361 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 6 355 2.6E-149 T 21-04-2016 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 RAF_RS05595 6931f0a112827481d918bcfa73a44451 361 Pfam PF01702 Queuine tRNA-ribosyltransferase 130 354 6.3E-78 T 21-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 RAF_RS05595 6931f0a112827481d918bcfa73a44451 361 Gene3D G3DSA:3.20.20.105 3 355 9.3E-151 T 21-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 RAF_RS05595 6931f0a112827481d918bcfa73a44451 361 PANTHER PTHR21148 1 352 3.9E-152 T 21-04-2016 RAF_RS05595 6931f0a112827481d918bcfa73a44451 361 SUPERFAMILY SSF51713 3 355 1.7E-147 T 21-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 RAF_RS05595 6931f0a112827481d918bcfa73a44451 361 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 4 361 56.42 T 21-04-2016 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 RAF_RS05595 6931f0a112827481d918bcfa73a44451 361 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 6 358 4.1E-144 T 21-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 RAF_RS01855 5823c989b1e3e566f0a88211ec82ad42 177 PANTHER PTHR10134 13 177 3.0E-78 T 21-04-2016 IPR014349 Rieske iron-sulphur protein GO:0016679|GO:0055114 RAF_RS01855 5823c989b1e3e566f0a88211ec82ad42 177 Pfam PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal 5 44 3.8E-17 T 21-04-2016 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 RAF_RS01855 5823c989b1e3e566f0a88211ec82ad42 177 SUPERFAMILY SSF50022 34 174 1.31E-42 T 21-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RAF_RS01855 5823c989b1e3e566f0a88211ec82ad42 177 Gene3D G3DSA:1.20.5.510 5 44 4.3E-16 T 21-04-2016 RAF_RS01855 5823c989b1e3e566f0a88211ec82ad42 177 Pfam PF00355 Rieske [2Fe-2S] domain 60 164 6.5E-13 T 21-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RAF_RS01855 5823c989b1e3e566f0a88211ec82ad42 177 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 12 36 0.0012 T 21-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal RAF_RS01855 5823c989b1e3e566f0a88211ec82ad42 177 PRINTS PR00162 Rieske 2Fe-2S subunit signature 137 149 3.4E-17 T 21-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RAF_RS01855 5823c989b1e3e566f0a88211ec82ad42 177 PRINTS PR00162 Rieske 2Fe-2S subunit signature 115 126 3.4E-17 T 21-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RAF_RS01855 5823c989b1e3e566f0a88211ec82ad42 177 PRINTS PR00162 Rieske 2Fe-2S subunit signature 149 161 3.4E-17 T 21-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RAF_RS01855 5823c989b1e3e566f0a88211ec82ad42 177 PANTHER PTHR10134:SF1 13 177 3.0E-78 T 21-04-2016 RAF_RS01855 5823c989b1e3e566f0a88211ec82ad42 177 Gene3D G3DSA:2.102.10.10 52 174 2.4E-39 T 21-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RAF_RS01855 5823c989b1e3e566f0a88211ec82ad42 177 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 13 177 2.1E-70 T 21-04-2016 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 RAF_RS05055 184ed513c6de725831411d5307a2fa01 118 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 3 118 27.062 T 21-04-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05055 184ed513c6de725831411d5307a2fa01 118 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 9 115 4.7E-41 T 21-04-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05055 184ed513c6de725831411d5307a2fa01 118 SUPERFAMILY SSF53137 7 114 1.96E-45 T 21-04-2016 RAF_RS05055 184ed513c6de725831411d5307a2fa01 118 PANTHER PTHR12899 1 114 1.9E-34 T 21-04-2016 RAF_RS05055 184ed513c6de725831411d5307a2fa01 118 Gene3D G3DSA:3.30.420.100 22 114 1.5E-35 T 21-04-2016 RAF_RS05055 184ed513c6de725831411d5307a2fa01 118 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 8 115 4.1E-42 T 21-04-2016 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00880 d8460dcaac749276785b9e08cf1f1e81 596 SUPERFAMILY SSF46977 454 596 2.62E-51 T 21-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 RAF_RS00880 d8460dcaac749276785b9e08cf1f1e81 596 SUPERFAMILY SSF51905 8 263 2.18E-80 T 21-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAF_RS00880 d8460dcaac749276785b9e08cf1f1e81 596 SUPERFAMILY SSF51905 362 434 2.18E-80 T 21-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAF_RS00880 d8460dcaac749276785b9e08cf1f1e81 596 Pfam PF02910 Fumarate reductase flavoprotein C-term 463 596 1.3E-43 T 21-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 RAF_RS00880 d8460dcaac749276785b9e08cf1f1e81 596 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 47 56 - T 21-04-2016 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 RAF_RS00880 d8460dcaac749276785b9e08cf1f1e81 596 Gene3D G3DSA:4.10.80.40 543 596 5.4E-29 T 21-04-2016 RAF_RS00880 d8460dcaac749276785b9e08cf1f1e81 596 Pfam PF00890 FAD binding domain 13 408 3.2E-130 T 21-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain RAF_RS00880 d8460dcaac749276785b9e08cf1f1e81 596 Gene3D G3DSA:3.90.700.10 247 352 3.3E-43 T 21-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain RAF_RS00880 d8460dcaac749276785b9e08cf1f1e81 596 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 13 596 5.5E-263 T 21-04-2016 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 RAF_RS00880 d8460dcaac749276785b9e08cf1f1e81 596 SUPERFAMILY SSF56425 240 358 1.64E-42 T 21-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain RAF_RS00880 d8460dcaac749276785b9e08cf1f1e81 596 PIRSF PIRSF000171 2 585 2.0E-43 T 21-04-2016 IPR030664 Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit RAF_RS00880 d8460dcaac749276785b9e08cf1f1e81 596 Gene3D G3DSA:3.50.50.60 354 427 2.4E-129 T 21-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAF_RS00880 d8460dcaac749276785b9e08cf1f1e81 596 Gene3D G3DSA:3.50.50.60 3 246 2.4E-129 T 21-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAF_RS00880 d8460dcaac749276785b9e08cf1f1e81 596 PANTHER PTHR11632:SF51 1 591 0.0 T 21-04-2016 RAF_RS00880 d8460dcaac749276785b9e08cf1f1e81 596 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 10 596 0.0 T 21-04-2016 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 RAF_RS00880 d8460dcaac749276785b9e08cf1f1e81 596 PANTHER PTHR11632 1 591 0.0 T 21-04-2016 RAF_RS00880 d8460dcaac749276785b9e08cf1f1e81 596 Gene3D G3DSA:1.20.58.100 436 542 5.6E-40 T 21-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 RAF_RS02615 23d0a35b3f701321bb3b3fa2de571942 82 SUPERFAMILY SSF89447 3 44 2.22E-9 T 21-04-2016 RAF_RS02615 23d0a35b3f701321bb3b3fa2de571942 82 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 8 49 4.1E-6 T 21-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 RAF_RS02615 23d0a35b3f701321bb3b3fa2de571942 82 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 6 46 1.1E-15 T 21-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 RAF_RS02615 23d0a35b3f701321bb3b3fa2de571942 82 SMART SM00966 7 51 6.4E-7 T 21-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 RAF_RS02615 23d0a35b3f701321bb3b3fa2de571942 82 Gene3D G3DSA:2.10.260.10 5 40 3.7E-8 T 21-04-2016 RAF_RS06855 82bad24911f336edd6569f7c1c22b7bb 154 Gene3D G3DSA:3.40.50.10110 14 124 7.4E-19 T 21-04-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 RAF_RS06855 82bad24911f336edd6569f7c1c22b7bb 154 SUPERFAMILY SSF102400 1 135 6.41E-25 T 21-04-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 RAF_RS06855 82bad24911f336edd6569f7c1c22b7bb 154 Pfam PF04364 DNA polymerase III chi subunit, HolC 1 121 1.3E-17 T 21-04-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 RAF_RS04145 be1ac171735f4b907fb1ba66e354a5bc 237 TIGRFAM TIGR00613 reco: DNA repair protein RecO 3 232 1.5E-62 T 21-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 RAF_RS04145 be1ac171735f4b907fb1ba66e354a5bc 237 Pfam PF11967 Recombination protein O N terminal 1 76 6.2E-10 T 21-04-2016 IPR022572 DNA replication/recombination mediator RecO, N-terminal RAF_RS04145 be1ac171735f4b907fb1ba66e354a5bc 237 Hamap MF_00201 DNA repair protein RecO [recO]. 1 233 14.893 T 21-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 RAF_RS04145 be1ac171735f4b907fb1ba66e354a5bc 237 Gene3D G3DSA:2.40.50.140 3 45 1.9E-4 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS04145 be1ac171735f4b907fb1ba66e354a5bc 237 SUPERFAMILY SSF57863 86 174 1.99E-6 T 21-04-2016 RAF_RS04145 be1ac171735f4b907fb1ba66e354a5bc 237 ProDom PD202328 DNA REPAIR RECOMBINATION RECO DAMAGE O O RECO-RELATED RECOMBINATIONAL RP549 117 235 2.0E-64 T 21-04-2016 RAF_RS04145 be1ac171735f4b907fb1ba66e354a5bc 237 PANTHER PTHR33991 1 237 3.6E-14 T 21-04-2016 RAF_RS04145 be1ac171735f4b907fb1ba66e354a5bc 237 Pfam PF02565 Recombination protein O C terminal 86 219 5.2E-18 T 21-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 RAF_RS06135 9ba61008178166079258fa7fc4427f06 1181 Gene3D G3DSA:3.20.20.140 10 249 2.8E-13 T 21-04-2016 RAF_RS06135 9ba61008178166079258fa7fc4427f06 1181 Gene3D G3DSA:1.10.150.280 857 923 6.0E-5 T 21-04-2016 RAF_RS06135 9ba61008178166079258fa7fc4427f06 1181 SUPERFAMILY SSF89550 11 257 3.14E-11 T 21-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 RAF_RS06135 9ba61008178166079258fa7fc4427f06 1181 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 5 1061 0.0 T 21-04-2016 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAF_RS06135 9ba61008178166079258fa7fc4427f06 1181 SMART SM00481 6 73 9.6E-20 T 21-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 RAF_RS06135 9ba61008178166079258fa7fc4427f06 1181 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 293 734 1.5E-162 T 21-04-2016 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAF_RS06135 9ba61008178166079258fa7fc4427f06 1181 Gene3D G3DSA:2.40.50.140 1024 1104 9.7E-4 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS06135 9ba61008178166079258fa7fc4427f06 1181 Pfam PF14579 Helix-hairpin-helix motif 807 931 1.7E-17 T 21-04-2016 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAF_RS06135 9ba61008178166079258fa7fc4427f06 1181 Pfam PF02811 PHP domain 7 170 4.4E-26 T 21-04-2016 IPR004013 PHP domain GO:0003824 RAF_RS06135 9ba61008178166079258fa7fc4427f06 1181 PANTHER PTHR32294:SF0 1 826 0.0 T 21-04-2016 RAF_RS06135 9ba61008178166079258fa7fc4427f06 1181 PANTHER PTHR32294:SF0 862 1169 0.0 T 21-04-2016 RAF_RS06135 9ba61008178166079258fa7fc4427f06 1181 PANTHER PTHR32294 1 826 0.0 T 21-04-2016 RAF_RS06135 9ba61008178166079258fa7fc4427f06 1181 PANTHER PTHR32294 862 1169 0.0 T 21-04-2016 RAF_RS02795 5c870fd30f645d170bc5d9f47c8a0500 208 Gene3D G3DSA:2.60.130.10 44 202 5.8E-23 T 21-04-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 RAF_RS02795 5c870fd30f645d170bc5d9f47c8a0500 208 SUPERFAMILY SSF49482 15 202 4.97E-26 T 21-04-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 RAF_RS02795 5c870fd30f645d170bc5d9f47c8a0500 208 Pfam PF00775 Dioxygenase 54 139 1.0E-8 T 21-04-2016 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 RAF_RS03365 3c11393e5762c4640544bc9a19df625f 169 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 2 33 5.4E-12 T 21-04-2016 IPR005728 Rickettsial palindromic element RAF_RS03365 3c11393e5762c4640544bc9a19df625f 169 Pfam PF03968 OstA-like protein 58 164 3.6E-10 T 21-04-2016 IPR005653 Organic solvent tolerance-like, N-terminal RAF_RS03365 3c11393e5762c4640544bc9a19df625f 169 Gene3D G3DSA:2.60.450.10 55 164 1.1E-17 T 21-04-2016 RAF_RS02885 ab62fb7ea4000b9d015e656d27505f20 377 PANTHER PTHR30474 1 364 5.5E-98 T 21-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 RAF_RS02885 ab62fb7ea4000b9d015e656d27505f20 377 PANTHER PTHR30474:SF2 1 364 5.5E-98 T 21-04-2016 RAF_RS02885 ab62fb7ea4000b9d015e656d27505f20 377 Pfam PF01098 Cell cycle protein 21 363 3.5E-74 T 21-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 RAF_RS02885 ab62fb7ea4000b9d015e656d27505f20 377 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 18 363 7.6E-109 T 21-04-2016 IPR013437 Cell division protein FtsW GO:0009252|GO:0016021|GO:0051301 RAF_RS03495 7cf8ce341fb3de029cb00c4f8e9aa825 270 Pfam PF02237 Biotin protein ligase C terminal domain 220 261 6.2E-6 T 21-04-2016 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15 RAF_RS03495 7cf8ce341fb3de029cb00c4f8e9aa825 270 Gene3D G3DSA:2.30.30.100 219 258 2.4E-4 T 21-04-2016 RAF_RS03495 7cf8ce341fb3de029cb00c4f8e9aa825 270 PANTHER PTHR12835 116 270 9.2E-51 T 21-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 RAF_RS03495 7cf8ce341fb3de029cb00c4f8e9aa825 270 PANTHER PTHR12835 7 100 9.2E-51 T 21-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 RAF_RS03495 7cf8ce341fb3de029cb00c4f8e9aa825 270 SUPERFAMILY SSF55681 6 213 5.11E-51 T 21-04-2016 RAF_RS03495 7cf8ce341fb3de029cb00c4f8e9aa825 270 Gene3D G3DSA:3.30.930.10 5 213 1.1E-60 T 21-04-2016 RAF_RS03495 7cf8ce341fb3de029cb00c4f8e9aa825 270 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 110 247 4.7E-27 T 21-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 RAF_RS03495 7cf8ce341fb3de029cb00c4f8e9aa825 270 Pfam PF03099 Biotin/lipoate A/B protein ligase family 14 154 1.7E-16 T 21-04-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 RAF_RS05370 f11c425424379a945ad67a8de37c5de7 812 TIGRFAM TIGR00422 valS: valine--tRNA ligase 5 807 3.0E-208 T 21-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RAF_RS05370 f11c425424379a945ad67a8de37c5de7 812 Gene3D G3DSA:1.10.730.10 576 726 6.9E-39 T 21-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS05370 f11c425424379a945ad67a8de37c5de7 812 PRINTS PR00986 Valyl-tRNA synthetase signature 452 473 1.1E-16 T 21-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RAF_RS05370 f11c425424379a945ad67a8de37c5de7 812 PRINTS PR00986 Valyl-tRNA synthetase signature 39 50 1.1E-16 T 21-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RAF_RS05370 f11c425424379a945ad67a8de37c5de7 812 PRINTS PR00986 Valyl-tRNA synthetase signature 488 506 1.1E-16 T 21-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RAF_RS05370 f11c425424379a945ad67a8de37c5de7 812 PRINTS PR00986 Valyl-tRNA synthetase signature 229 246 1.1E-16 T 21-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RAF_RS05370 f11c425424379a945ad67a8de37c5de7 812 PRINTS PR00986 Valyl-tRNA synthetase signature 345 358 1.1E-16 T 21-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RAF_RS05370 f11c425424379a945ad67a8de37c5de7 812 PANTHER PTHR11946 1 796 3.6E-224 T 21-04-2016 RAF_RS05370 f11c425424379a945ad67a8de37c5de7 812 PANTHER PTHR11946:SF5 1 796 3.6E-224 T 21-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 RAF_RS05370 f11c425424379a945ad67a8de37c5de7 812 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 16 573 2.0E-114 T 21-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS05370 f11c425424379a945ad67a8de37c5de7 812 SUPERFAMILY SSF47323 587 805 1.31E-42 T 21-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS05370 f11c425424379a945ad67a8de37c5de7 812 Pfam PF08264 Anticodon-binding domain of tRNA 624 771 3.1E-31 T 21-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 RAF_RS05370 f11c425424379a945ad67a8de37c5de7 812 SUPERFAMILY SSF52374 2 190 5.42E-115 T 21-04-2016 RAF_RS05370 f11c425424379a945ad67a8de37c5de7 812 SUPERFAMILY SSF52374 340 582 5.42E-115 T 21-04-2016 RAF_RS05370 f11c425424379a945ad67a8de37c5de7 812 Hamap MF_02005 Valine--tRNA ligase [valS]. 4 799 28.984 T 21-04-2016 IPR022874 Valine-tRNA ligase, type 2 GO:0004832 KEGG: 00970+6.1.1.9 RAF_RS05370 f11c425424379a945ad67a8de37c5de7 812 SUPERFAMILY SSF50677 191 340 3.92E-46 T 21-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RAF_RS05370 f11c425424379a945ad67a8de37c5de7 812 Gene3D G3DSA:3.40.50.620 3 188 7.6E-111 T 21-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS05370 f11c425424379a945ad67a8de37c5de7 812 Gene3D G3DSA:3.40.50.620 343 567 7.6E-111 T 21-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS05370 f11c425424379a945ad67a8de37c5de7 812 Gene3D G3DSA:3.90.740.10 193 336 8.3E-40 T 21-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 RAF_RS05370 f11c425424379a945ad67a8de37c5de7 812 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 46 57 - T 21-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS03945 0af7c03595fd52c14dfc9d2919e88c22 226 SUPERFAMILY SSF53335 7 178 2.73E-18 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS03945 0af7c03595fd52c14dfc9d2919e88c22 226 PANTHER PTHR13090 2 180 1.7E-31 T 21-04-2016 RAF_RS03945 0af7c03595fd52c14dfc9d2919e88c22 226 Gene3D G3DSA:3.40.50.150 5 199 1.1E-22 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS03945 0af7c03595fd52c14dfc9d2919e88c22 226 Pfam PF08241 Methyltransferase domain 16 98 1.2E-9 T 21-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 RAF_RS03945 0af7c03595fd52c14dfc9d2919e88c22 226 PANTHER PTHR13090:SF1 2 180 1.7E-31 T 21-04-2016 RAF_RS02085 7f0513f3952fbda4ca883ee169767521 258 PRINTS PR00377 Inositol monophosphatase superfamily signature 79 95 1.8E-12 T 21-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RAF_RS02085 7f0513f3952fbda4ca883ee169767521 258 PRINTS PR00377 Inositol monophosphatase superfamily signature 37 57 1.8E-12 T 21-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RAF_RS02085 7f0513f3952fbda4ca883ee169767521 258 PRINTS PR00377 Inositol monophosphatase superfamily signature 202 226 1.8E-12 T 21-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RAF_RS02085 7f0513f3952fbda4ca883ee169767521 258 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 79 92 - T 21-04-2016 IPR020583 Inositol monophosphatase, metal-binding site RAF_RS02085 7f0513f3952fbda4ca883ee169767521 258 PANTHER PTHR20854:SF5 4 241 4.1E-45 T 21-04-2016 RAF_RS02085 7f0513f3952fbda4ca883ee169767521 258 Gene3D G3DSA:3.30.540.10 4 147 1.8E-28 T 21-04-2016 RAF_RS02085 7f0513f3952fbda4ca883ee169767521 258 Pfam PF00459 Inositol monophosphatase family 5 240 1.4E-46 T 21-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RAF_RS02085 7f0513f3952fbda4ca883ee169767521 258 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 205 219 - T 21-04-2016 IPR020550 Inositol monophosphatase, conserved site GO:0046854 RAF_RS02085 7f0513f3952fbda4ca883ee169767521 258 Gene3D G3DSA:3.40.190.80 148 246 5.3E-35 T 21-04-2016 RAF_RS02085 7f0513f3952fbda4ca883ee169767521 258 PANTHER PTHR20854 4 241 4.1E-45 T 21-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RAF_RS02085 7f0513f3952fbda4ca883ee169767521 258 SUPERFAMILY SSF56655 3 245 7.07E-57 T 21-04-2016 RAF_RS04900 6d9521e0dede4eac778e1fe0483101b5 513 PANTHER PTHR11451 333 366 1.7E-86 T 21-04-2016 RAF_RS04900 6d9521e0dede4eac778e1fe0483101b5 513 PANTHER PTHR11451 500 513 1.7E-86 T 21-04-2016 RAF_RS04900 6d9521e0dede4eac778e1fe0483101b5 513 PANTHER PTHR11451 3 313 1.7E-86 T 21-04-2016 RAF_RS04900 6d9521e0dede4eac778e1fe0483101b5 513 SUPERFAMILY SSF52374 5 299 8.31E-105 T 21-04-2016 RAF_RS04900 6d9521e0dede4eac778e1fe0483101b5 513 Gene3D G3DSA:1.10.1160.10 236 317 1.0E-30 T 21-04-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: REACT_71 RAF_RS04900 6d9521e0dede4eac778e1fe0483101b5 513 Gene3D G3DSA:3.90.800.10 70 183 3.1E-29 T 21-04-2016 RAF_RS04900 6d9521e0dede4eac778e1fe0483101b5 513 PRINTS PR00987 Glutamyl-tRNA synthetase signature 37 50 4.0E-26 T 21-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RAF_RS04900 6d9521e0dede4eac778e1fe0483101b5 513 PRINTS PR00987 Glutamyl-tRNA synthetase signature 182 192 4.0E-26 T 21-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RAF_RS04900 6d9521e0dede4eac778e1fe0483101b5 513 PRINTS PR00987 Glutamyl-tRNA synthetase signature 8 20 4.0E-26 T 21-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RAF_RS04900 6d9521e0dede4eac778e1fe0483101b5 513 PRINTS PR00987 Glutamyl-tRNA synthetase signature 22 33 4.0E-26 T 21-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RAF_RS04900 6d9521e0dede4eac778e1fe0483101b5 513 PRINTS PR00987 Glutamyl-tRNA synthetase signature 198 206 4.0E-26 T 21-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 RAF_RS04900 6d9521e0dede4eac778e1fe0483101b5 513 SUPERFAMILY SSF48163 396 511 3.92E-27 T 21-04-2016 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RAF_RS04900 6d9521e0dede4eac778e1fe0483101b5 513 SUPERFAMILY SSF48163 282 367 3.92E-27 T 21-04-2016 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RAF_RS04900 6d9521e0dede4eac778e1fe0483101b5 513 Gene3D G3DSA:3.40.50.620 5 69 1.2E-51 T 21-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS04900 6d9521e0dede4eac778e1fe0483101b5 513 Gene3D G3DSA:3.40.50.620 184 233 1.2E-51 T 21-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS04900 6d9521e0dede4eac778e1fe0483101b5 513 PANTHER PTHR11451:SF41 333 366 1.7E-86 T 21-04-2016 RAF_RS04900 6d9521e0dede4eac778e1fe0483101b5 513 PANTHER PTHR11451:SF41 500 513 1.7E-86 T 21-04-2016 RAF_RS04900 6d9521e0dede4eac778e1fe0483101b5 513 PANTHER PTHR11451:SF41 3 313 1.7E-86 T 21-04-2016 RAF_RS04900 6d9521e0dede4eac778e1fe0483101b5 513 Gene3D G3DSA:1.10.10.350 418 511 1.5E-24 T 21-04-2016 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RAF_RS04900 6d9521e0dede4eac778e1fe0483101b5 513 Hamap MF_00022_B Glutamate--tRNA ligase [gltX]. 5 513 30.567 T 21-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RAF_RS04900 6d9521e0dede4eac778e1fe0483101b5 513 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 5 337 9.3E-137 T 21-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 RAF_RS04900 6d9521e0dede4eac778e1fe0483101b5 513 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 338 379 2.3E-21 T 21-04-2016 IPR005728 Rickettsial palindromic element RAF_RS04900 6d9521e0dede4eac778e1fe0483101b5 513 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 5 307 1.4E-94 T 21-04-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 RAF_RS04755 b675126479718d3ab368cd687f2aebe9 117 PRINTS PR00062 Ribosomal protein L20 signature 75 101 7.8E-38 T 21-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RAF_RS04755 b675126479718d3ab368cd687f2aebe9 117 PRINTS PR00062 Ribosomal protein L20 signature 42 71 7.8E-38 T 21-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RAF_RS04755 b675126479718d3ab368cd687f2aebe9 117 PRINTS PR00062 Ribosomal protein L20 signature 12 41 7.8E-38 T 21-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RAF_RS04755 b675126479718d3ab368cd687f2aebe9 117 Pfam PF00453 Ribosomal protein L20 3 108 1.2E-46 T 21-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RAF_RS04755 b675126479718d3ab368cd687f2aebe9 117 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 2.3E-50 T 21-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RAF_RS04755 b675126479718d3ab368cd687f2aebe9 117 SUPERFAMILY SSF74731 2 115 7.06E-47 T 21-04-2016 RAF_RS04755 b675126479718d3ab368cd687f2aebe9 117 Gene3D G3DSA:1.10.1900.20 55 116 1.7E-28 T 21-04-2016 RAF_RS04755 b675126479718d3ab368cd687f2aebe9 117 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 20 72 4.0E-17 T 21-04-2016 RAF_RS04755 b675126479718d3ab368cd687f2aebe9 117 PANTHER PTHR10986 2 115 1.2E-58 T 21-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RAF_RS04755 b675126479718d3ab368cd687f2aebe9 117 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 21-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RAF_RS04755 b675126479718d3ab368cd687f2aebe9 117 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 28.644 T 21-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 RAF_RS05035 978052d095bdac6aefec3dd9cce28731 433 PANTHER PTHR10906 12 432 2.7E-177 T 21-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 RAF_RS05035 978052d095bdac6aefec3dd9cce28731 433 PIRSF PIRSF004557 3 433 1.0E-116 T 21-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 RAF_RS05035 978052d095bdac6aefec3dd9cce28731 433 Pfam PF00344 SecY translocase 70 410 1.6E-109 T 21-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 RAF_RS05035 978052d095bdac6aefec3dd9cce28731 433 SUPERFAMILY SSF103491 11 417 3.53E-122 T 21-04-2016 IPR023201 SecY subunit domain RAF_RS05035 978052d095bdac6aefec3dd9cce28731 433 ProSitePatterns PS00756 Protein secY signature 2. 168 185 - T 21-04-2016 IPR030659 SecY conserved site RAF_RS05035 978052d095bdac6aefec3dd9cce28731 433 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 16 422 1.5E-119 T 21-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 RAF_RS05035 978052d095bdac6aefec3dd9cce28731 433 ProSitePatterns PS00755 Protein secY signature 1. 70 89 - T 21-04-2016 IPR030659 SecY conserved site RAF_RS05035 978052d095bdac6aefec3dd9cce28731 433 Hamap MF_01465 Protein translocase subunit SecY [secY]. 5 426 28.316 T 21-04-2016 IPR026593 Protein translocase subunit SecY RAF_RS05035 978052d095bdac6aefec3dd9cce28731 433 Gene3D G3DSA:1.10.3370.10 11 430 2.4E-150 T 21-04-2016 IPR023201 SecY subunit domain RAF_RS05035 978052d095bdac6aefec3dd9cce28731 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 175 198 3.0E-95 T 21-04-2016 RAF_RS05035 978052d095bdac6aefec3dd9cce28731 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 17 35 3.0E-95 T 21-04-2016 RAF_RS05035 978052d095bdac6aefec3dd9cce28731 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 149 174 3.0E-95 T 21-04-2016 RAF_RS05035 978052d095bdac6aefec3dd9cce28731 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 395 413 3.0E-95 T 21-04-2016 RAF_RS05035 978052d095bdac6aefec3dd9cce28731 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 363 381 3.0E-95 T 21-04-2016 RAF_RS05035 978052d095bdac6aefec3dd9cce28731 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 308 330 3.0E-95 T 21-04-2016 RAF_RS05035 978052d095bdac6aefec3dd9cce28731 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 110 133 3.0E-95 T 21-04-2016 RAF_RS05035 978052d095bdac6aefec3dd9cce28731 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 69 89 3.0E-95 T 21-04-2016 RAF_RS05035 978052d095bdac6aefec3dd9cce28731 433 PRINTS PR00303 Preprotein translocase SecY subunit signature 267 286 3.0E-95 T 21-04-2016 RAF_RS05035 978052d095bdac6aefec3dd9cce28731 433 PANTHER PTHR10906:SF2 12 432 2.7E-177 T 21-04-2016 RAF_RS01460 38137969e87034c166f3c41ba0758dbc 350 Gene3D G3DSA:3.40.50.300 22 169 1.3E-23 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01460 38137969e87034c166f3c41ba0758dbc 350 SUPERFAMILY SSF52540 39 168 2.6E-18 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01460 38137969e87034c166f3c41ba0758dbc 350 Pfam PF03969 AFG1-like ATPase 9 343 1.7E-80 T 21-04-2016 IPR005654 ATPase, AFG1-like GO:0005524 RAF_RS01460 38137969e87034c166f3c41ba0758dbc 350 PANTHER PTHR12169 46 343 1.3E-84 T 21-04-2016 IPR005654 ATPase, AFG1-like GO:0005524 RAF_RS06840 44d7d7e8817160235538efe183b55560 215 SUPERFAMILY SSF48317 9 197 1.96E-23 T 21-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RAF_RS06840 44d7d7e8817160235538efe183b55560 215 Pfam PF01569 PAP2 superfamily 83 195 7.8E-18 T 21-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RAF_RS06840 44d7d7e8817160235538efe183b55560 215 SMART SM00014 77 193 1.2E-10 T 21-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RAF_RS06840 44d7d7e8817160235538efe183b55560 215 PANTHER PTHR14969 73 205 2.8E-19 T 21-04-2016 RAF_RS06840 44d7d7e8817160235538efe183b55560 215 PANTHER PTHR14969 11 53 2.8E-19 T 21-04-2016 RAF_RS06840 44d7d7e8817160235538efe183b55560 215 Gene3D G3DSA:1.20.144.10 58 188 1.9E-16 T 21-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RAF_RS06225 dee650f9442e71eebd18bfca143356f1 159 SUPERFAMILY SSF54862 33 142 3.56E-28 T 21-04-2016 RAF_RS06225 dee650f9442e71eebd18bfca143356f1 159 PANTHER PTHR10849:SF16 8 159 1.1E-103 T 21-04-2016 RAF_RS06225 dee650f9442e71eebd18bfca143356f1 159 Pfam PF12838 4Fe-4S dicluster domain 59 113 1.8E-13 T 21-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RAF_RS06225 dee650f9442e71eebd18bfca143356f1 159 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 7 143 29.192 T 21-04-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 RAF_RS06225 dee650f9442e71eebd18bfca143356f1 159 Gene3D G3DSA:1.10.1060.10 12 124 1.8E-23 T 21-04-2016 RAF_RS06225 dee650f9442e71eebd18bfca143356f1 159 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 16 137 5.4E-51 T 21-04-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 RAF_RS06225 dee650f9442e71eebd18bfca143356f1 159 PANTHER PTHR10849 8 159 1.1E-103 T 21-04-2016 RAF_RS06225 dee650f9442e71eebd18bfca143356f1 159 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 60 71 - T 21-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RAF_RS06225 dee650f9442e71eebd18bfca143356f1 159 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 99 110 - T 21-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RAF_RS04155 7cf0bec806f250bffba9c83ac8142ccf 232 PANTHER PTHR11735 1 136 1.3E-24 T 21-04-2016 RAF_RS04155 7cf0bec806f250bffba9c83ac8142ccf 232 PANTHER PTHR11735:SF11 1 136 1.3E-24 T 21-04-2016 RAF_RS04155 7cf0bec806f250bffba9c83ac8142ccf 232 SUPERFAMILY SSF53067 1 102 1.64E-22 T 21-04-2016 RAF_RS04155 7cf0bec806f250bffba9c83ac8142ccf 232 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 3 216 1.4E-41 T 21-04-2016 IPR022496 tRNA threonylcarbamoyl adenosine modification protein YeaZ GO:0002949 RAF_RS04155 7cf0bec806f250bffba9c83ac8142ccf 232 Gene3D G3DSA:3.30.420.40 1 134 3.6E-31 T 21-04-2016 RAF_RS04155 7cf0bec806f250bffba9c83ac8142ccf 232 Pfam PF00814 Glycoprotease family 36 129 2.7E-15 T 21-04-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 RAF_RS02810 40f5323a712d18f7afa162fa71f81de8 148 PANTHER PTHR11241 18 148 7.9E-50 T 21-04-2016 RAF_RS02810 40f5323a712d18f7afa162fa71f81de8 148 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 4 148 33.39 T 21-04-2016 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|UniPathway: UPA00610 RAF_RS02810 40f5323a712d18f7afa162fa71f81de8 148 TIGRFAM TIGR00576 dut: dUTP diphosphatase 7 147 1.4E-55 T 21-04-2016 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|UniPathway: UPA00610 RAF_RS02810 40f5323a712d18f7afa162fa71f81de8 148 Gene3D G3DSA:2.70.40.10 4 148 1.3E-56 T 21-04-2016 IPR029054 dUTPase-like RAF_RS02810 40f5323a712d18f7afa162fa71f81de8 148 SUPERFAMILY SSF51283 12 148 1.96E-51 T 21-04-2016 IPR029054 dUTPase-like RAF_RS02810 40f5323a712d18f7afa162fa71f81de8 148 Pfam PF00692 dUTPase 17 147 2.2E-33 T 21-04-2016 IPR008180 Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase GO:0016787|GO:0046080 RAF_RS06540 084f7ce52a095e2e923bd57b75a9fe3a 230 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 96 116 2.0E-57 T 21-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RAF_RS06540 084f7ce52a095e2e923bd57b75a9fe3a 230 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 117 137 2.0E-57 T 21-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RAF_RS06540 084f7ce52a095e2e923bd57b75a9fe3a 230 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 152 178 2.0E-57 T 21-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RAF_RS06540 084f7ce52a095e2e923bd57b75a9fe3a 230 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 58 78 2.0E-57 T 21-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RAF_RS06540 084f7ce52a095e2e923bd57b75a9fe3a 230 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 200 224 2.0E-57 T 21-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RAF_RS06540 084f7ce52a095e2e923bd57b75a9fe3a 230 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 41 58 2.0E-57 T 21-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RAF_RS06540 084f7ce52a095e2e923bd57b75a9fe3a 230 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 41 224 3.5E-80 T 21-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 RAF_RS06540 084f7ce52a095e2e923bd57b75a9fe3a 230 PANTHER PTHR30071 1 220 1.3E-60 T 21-04-2016 RAF_RS06540 084f7ce52a095e2e923bd57b75a9fe3a 230 Pfam PF01578 Cytochrome C assembly protein 11 179 3.4E-26 T 21-04-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 RAF_RS05925 d34cd93ac2a9b41bee2c7edf26b777a5 164 SUPERFAMILY SSF47413 28 95 7.19E-5 T 21-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RAF_RS05925 d34cd93ac2a9b41bee2c7edf26b777a5 164 SMART SM00530 35 91 0.0051 T 21-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAF_RS05925 d34cd93ac2a9b41bee2c7edf26b777a5 164 Gene3D G3DSA:1.10.260.40 34 95 6.0E-6 T 21-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RAF_RS01685 ea91f83da61bcc88175bad88db11a82e 248 PRINTS PR00377 Inositol monophosphatase superfamily signature 79 95 2.3E-8 T 21-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RAF_RS01685 ea91f83da61bcc88175bad88db11a82e 248 PRINTS PR00377 Inositol monophosphatase superfamily signature 177 198 2.3E-8 T 21-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RAF_RS01685 ea91f83da61bcc88175bad88db11a82e 248 PRINTS PR00377 Inositol monophosphatase superfamily signature 141 164 2.3E-8 T 21-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RAF_RS01685 ea91f83da61bcc88175bad88db11a82e 248 PRINTS PR00377 Inositol monophosphatase superfamily signature 208 232 2.3E-8 T 21-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RAF_RS01685 ea91f83da61bcc88175bad88db11a82e 248 Gene3D G3DSA:3.40.190.80 160 234 1.7E-7 T 21-04-2016 RAF_RS01685 ea91f83da61bcc88175bad88db11a82e 248 PANTHER PTHR20854 76 245 1.1E-12 T 21-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RAF_RS01685 ea91f83da61bcc88175bad88db11a82e 248 PANTHER PTHR20854:SF4 76 245 1.1E-12 T 21-04-2016 RAF_RS01685 ea91f83da61bcc88175bad88db11a82e 248 Gene3D G3DSA:3.30.540.10 2 159 1.2E-19 T 21-04-2016 RAF_RS01685 ea91f83da61bcc88175bad88db11a82e 248 SUPERFAMILY SSF56655 1 244 1.06E-32 T 21-04-2016 RAF_RS01685 ea91f83da61bcc88175bad88db11a82e 248 Pfam PF00459 Inositol monophosphatase family 1 242 7.0E-15 T 21-04-2016 IPR000760 Inositol monophosphatase GO:0046854 RAF_RS01205 4393c0b6b24cc1d1e8dcd9ecf0016220 496 PANTHER PTHR34217:SF1 1 496 1.0E-188 T 21-04-2016 RAF_RS01205 4393c0b6b24cc1d1e8dcd9ecf0016220 496 SUPERFAMILY SSF55486 4 496 2.2E-111 T 21-04-2016 RAF_RS01205 4393c0b6b24cc1d1e8dcd9ecf0016220 496 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 401 422 3.65E-46 T 21-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 RAF_RS01205 4393c0b6b24cc1d1e8dcd9ecf0016220 496 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 264 283 3.65E-46 T 21-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 RAF_RS01205 4393c0b6b24cc1d1e8dcd9ecf0016220 496 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 332 351 3.65E-46 T 21-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 RAF_RS01205 4393c0b6b24cc1d1e8dcd9ecf0016220 496 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 244 263 3.65E-46 T 21-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 RAF_RS01205 4393c0b6b24cc1d1e8dcd9ecf0016220 496 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 378 395 3.65E-46 T 21-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 RAF_RS01205 4393c0b6b24cc1d1e8dcd9ecf0016220 496 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 148 168 3.65E-46 T 21-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 RAF_RS01205 4393c0b6b24cc1d1e8dcd9ecf0016220 496 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 446 464 3.65E-46 T 21-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 RAF_RS01205 4393c0b6b24cc1d1e8dcd9ecf0016220 496 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 291 307 3.65E-46 T 21-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 RAF_RS01205 4393c0b6b24cc1d1e8dcd9ecf0016220 496 PIRSF PIRSF006615 1 496 5.2E-192 T 21-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 RAF_RS01205 4393c0b6b24cc1d1e8dcd9ecf0016220 496 Pfam PF02074 Carboxypeptidase Taq (M32) metallopeptidase 12 495 4.0E-87 T 21-04-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 RAF_RS01205 4393c0b6b24cc1d1e8dcd9ecf0016220 496 PANTHER PTHR34217 1 496 1.0E-188 T 21-04-2016 RAF_RS00155 6baf915d05d1f4a07a7f0430b15bc602 242 Pfam PF00119 ATP synthase A chain 31 235 1.8E-52 T 21-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RAF_RS00155 6baf915d05d1f4a07a7f0430b15bc602 242 Hamap MF_01393 ATP synthase subunit a [atpB]. 7 242 16.013 T 21-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RAF_RS00155 6baf915d05d1f4a07a7f0430b15bc602 242 PRINTS PR00123 ATP synthase A subunit signature 168 190 3.1E-33 T 21-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RAF_RS00155 6baf915d05d1f4a07a7f0430b15bc602 242 PRINTS PR00123 ATP synthase A subunit signature 148 163 3.1E-33 T 21-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RAF_RS00155 6baf915d05d1f4a07a7f0430b15bc602 242 PRINTS PR00123 ATP synthase A subunit signature 87 103 3.1E-33 T 21-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RAF_RS00155 6baf915d05d1f4a07a7f0430b15bc602 242 PRINTS PR00123 ATP synthase A subunit signature 222 237 3.1E-33 T 21-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RAF_RS00155 6baf915d05d1f4a07a7f0430b15bc602 242 SUPERFAMILY SSF81336 80 236 1.44E-47 T 21-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RAF_RS00155 6baf915d05d1f4a07a7f0430b15bc602 242 ProSitePatterns PS00449 ATP synthase a subunit signature. 171 180 - T 21-04-2016 IPR023011 ATPase, F0 complex, subunit A, active site RAF_RS00155 6baf915d05d1f4a07a7f0430b15bc602 242 PANTHER PTHR11410:SF6 5 242 3.2E-94 T 21-04-2016 RAF_RS00155 6baf915d05d1f4a07a7f0430b15bc602 242 PANTHER PTHR11410 5 242 3.2E-94 T 21-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RAF_RS00155 6baf915d05d1f4a07a7f0430b15bc602 242 Gene3D G3DSA:1.20.120.220 80 240 1.9E-49 T 21-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RAF_RS00155 6baf915d05d1f4a07a7f0430b15bc602 242 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 6 238 6.4E-73 T 21-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 RAF_RS05640 33be6d81c6fc2e354568983ad77f6ffd 155 SUPERFAMILY SSF53098 6 145 2.4E-53 T 21-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RAF_RS05640 33be6d81c6fc2e354568983ad77f6ffd 155 Gene3D G3DSA:3.30.420.10 5 145 1.2E-55 T 21-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RAF_RS05640 33be6d81c6fc2e354568983ad77f6ffd 155 PANTHER PTHR10642 1 145 5.6E-54 T 21-04-2016 RAF_RS05640 33be6d81c6fc2e354568983ad77f6ffd 155 Hamap MF_00042 Ribonuclease H [rnhA]. 5 153 29.534 T 21-04-2016 IPR022892 Ribonuclease H GO:0004523 RAF_RS05640 33be6d81c6fc2e354568983ad77f6ffd 155 Pfam PF00075 RNase H 6 144 9.4E-49 T 21-04-2016 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 RAF_RS04645 a20412c5eb0224f5daa91379a86de7d4 479 Pfam PF02875 Mur ligase family, glutamate ligase domain 322 405 5.8E-20 T 21-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RAF_RS04645 a20412c5eb0224f5daa91379a86de7d4 479 SUPERFAMILY SSF63418 7 87 1.24E-18 T 21-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RAF_RS04645 a20412c5eb0224f5daa91379a86de7d4 479 Gene3D G3DSA:3.40.1390.10 9 86 7.2E-17 T 21-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RAF_RS04645 a20412c5eb0224f5daa91379a86de7d4 479 Gene3D G3DSA:3.40.1190.10 87 327 2.5E-71 T 21-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RAF_RS04645 a20412c5eb0224f5daa91379a86de7d4 479 Gene3D G3DSA:3.90.190.20 328 465 1.4E-49 T 21-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RAF_RS04645 a20412c5eb0224f5daa91379a86de7d4 479 PANTHER PTHR23135 1 470 3.0E-135 T 21-04-2016 RAF_RS04645 a20412c5eb0224f5daa91379a86de7d4 479 Pfam PF01225 Mur ligase family, catalytic domain 14 83 7.2E-11 T 21-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RAF_RS04645 a20412c5eb0224f5daa91379a86de7d4 479 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 3 472 30.751 T 21-04-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 RAF_RS04645 a20412c5eb0224f5daa91379a86de7d4 479 SUPERFAMILY SSF53623 87 318 7.59E-58 T 21-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RAF_RS04645 a20412c5eb0224f5daa91379a86de7d4 479 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 12 472 8.5E-158 T 21-04-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 RAF_RS04645 a20412c5eb0224f5daa91379a86de7d4 479 PANTHER PTHR23135:SF4 1 470 3.0E-135 T 21-04-2016 RAF_RS04645 a20412c5eb0224f5daa91379a86de7d4 479 SUPERFAMILY SSF53244 322 472 6.02E-44 T 21-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RAF_RS04645 a20412c5eb0224f5daa91379a86de7d4 479 Pfam PF08245 Mur ligase middle domain 96 300 8.9E-45 T 21-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RAF_RS05810 9a184b159f48aa711cf3acdef973975d 167 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 45 160 4.0E-31 T 21-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 RAF_RS05810 9a184b159f48aa711cf3acdef973975d 167 PANTHER PTHR22881 43 167 5.0E-30 T 21-04-2016 RAF_RS05810 9a184b159f48aa711cf3acdef973975d 167 Pfam PF02130 Uncharacterized protein family UPF0054 20 159 1.2E-33 T 21-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 RAF_RS05810 9a184b159f48aa711cf3acdef973975d 167 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 131 141 - T 21-04-2016 IPR020549 Endoribonuclease YbeY, conserved site RAF_RS05810 9a184b159f48aa711cf3acdef973975d 167 Gene3D G3DSA:3.40.390.30 4 163 7.2E-41 T 21-04-2016 IPR023091 Metalloprotease catalytic domain, predicted GO:0004222 RAF_RS05810 9a184b159f48aa711cf3acdef973975d 167 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 1 165 20.814 T 21-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 RAF_RS05810 9a184b159f48aa711cf3acdef973975d 167 SUPERFAMILY SSF55486 23 167 7.33E-40 T 21-04-2016 RAF_RS04885 5d735cee4650681da09ff2aa63d900b5 68 Gene3D G3DSA:3.30.1460.30 4 68 1.2E-18 T 21-04-2016 IPR007076 TfoX, N-terminal RAF_RS04885 5d735cee4650681da09ff2aa63d900b5 68 SUPERFAMILY SSF159894 5 68 4.45E-17 T 21-04-2016 RAF_RS04885 5d735cee4650681da09ff2aa63d900b5 68 Pfam PF04993 TfoX N-terminal domain 12 68 8.9E-13 T 21-04-2016 IPR007076 TfoX, N-terminal RAF_RS00015 4de60c8734ec7b62ad0636bdcd255ab6 249 SUPERFAMILY SSF52540 42 240 4.55E-40 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00015 4de60c8734ec7b62ad0636bdcd255ab6 249 Gene3D G3DSA:3.40.50.300 42 243 1.2E-42 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00015 4de60c8734ec7b62ad0636bdcd255ab6 249 SMART SM00382 56 236 3.1E-6 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS00015 4de60c8734ec7b62ad0636bdcd255ab6 249 PANTHER PTHR24220:SF117 25 246 8.9E-60 T 21-04-2016 RAF_RS00015 4de60c8734ec7b62ad0636bdcd255ab6 249 PANTHER PTHR24220 25 246 8.9E-60 T 21-04-2016 RAF_RS00015 4de60c8734ec7b62ad0636bdcd255ab6 249 Pfam PF00005 ABC transporter 47 179 4.1E-18 T 21-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAF_RS00015 4de60c8734ec7b62ad0636bdcd255ab6 249 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 21-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAF_RS02435 5e74e5079018c1fc4907314315c8a599 165 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 8 163 5.1E-45 T 21-04-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 RAF_RS02435 5e74e5079018c1fc4907314315c8a599 165 SUPERFAMILY SSF50447 6 91 6.0E-14 T 21-04-2016 IPR009000 Translation protein, beta-barrel domain RAF_RS02435 5e74e5079018c1fc4907314315c8a599 165 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 7 165 18.041 T 21-04-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 RAF_RS02435 5e74e5079018c1fc4907314315c8a599 165 Gene3D G3DSA:2.30.30.240 97 148 1.7E-9 T 21-04-2016 RAF_RS02435 5e74e5079018c1fc4907314315c8a599 165 Pfam PF05239 PRC-barrel domain 94 158 6.7E-9 T 21-04-2016 IPR027275 PRC-barrel domain RAF_RS02435 5e74e5079018c1fc4907314315c8a599 165 Pfam PF01782 RimM N-terminal domain 10 87 3.6E-13 T 21-04-2016 IPR002676 RimM protein GO:0006364 RAF_RS02435 5e74e5079018c1fc4907314315c8a599 165 PANTHER PTHR33692 5 155 4.4E-28 T 21-04-2016 RAF_RS02435 5e74e5079018c1fc4907314315c8a599 165 Gene3D G3DSA:2.40.30.60 2 91 2.3E-15 T 21-04-2016 IPR002676 RimM protein GO:0006364 RAF_RS02435 5e74e5079018c1fc4907314315c8a599 165 SUPERFAMILY SSF50346 97 153 2.75E-11 T 21-04-2016 IPR011033 PRC-barrel-like RAF_RS02680 7626d433009e300bde5d3ba142553825 537 Gene3D G3DSA:3.40.50.880 286 535 3.9E-93 T 21-04-2016 IPR029062 Class I glutamine amidotransferase-like RAF_RS02680 7626d433009e300bde5d3ba142553825 537 SUPERFAMILY SSF52540 1 267 1.7E-110 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02680 7626d433009e300bde5d3ba142553825 537 Hamap MF_01227 CTP synthase [pyrG]. 2 534 46.696 T 21-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 RAF_RS02680 7626d433009e300bde5d3ba142553825 537 TIGRFAM TIGR00337 PyrG: CTP synthase 2 529 4.0E-212 T 21-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 RAF_RS02680 7626d433009e300bde5d3ba142553825 537 SUPERFAMILY SSF52317 288 534 3.8E-68 T 21-04-2016 IPR029062 Class I glutamine amidotransferase-like RAF_RS02680 7626d433009e300bde5d3ba142553825 537 Pfam PF06418 CTP synthase N-terminus 4 265 7.6E-110 T 21-04-2016 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 RAF_RS02680 7626d433009e300bde5d3ba142553825 537 Pfam PF00117 Glutamine amidotransferase class-I 300 529 6.2E-54 T 21-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 RAF_RS02680 7626d433009e300bde5d3ba142553825 537 PANTHER PTHR11550 1 533 5.1E-272 T 21-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 RAF_RS02680 7626d433009e300bde5d3ba142553825 537 Gene3D G3DSA:3.40.50.300 2 283 5.8E-116 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00345 8d11f7d678e4af6db106d71681f11223 171 Gene3D G3DSA:3.40.5.10 1 51 4.4E-20 T 21-04-2016 IPR020070 Ribosomal protein L9, N-terminal RAF_RS00345 8d11f7d678e4af6db106d71681f11223 171 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 146 2.5E-21 T 21-04-2016 IPR020069 Ribosomal protein L9, C-terminal RAF_RS00345 8d11f7d678e4af6db106d71681f11223 171 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 21-04-2016 IPR020070 Ribosomal protein L9, N-terminal RAF_RS00345 8d11f7d678e4af6db106d71681f11223 171 PANTHER PTHR21368 1 164 1.4E-38 T 21-04-2016 IPR000244 Ribosomal protein L9 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00345 8d11f7d678e4af6db106d71681f11223 171 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 148 22.757 T 21-04-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00345 8d11f7d678e4af6db106d71681f11223 171 SUPERFAMILY SSF55653 57 148 1.09E-22 T 21-04-2016 IPR020069 Ribosomal protein L9, C-terminal RAF_RS00345 8d11f7d678e4af6db106d71681f11223 171 Gene3D G3DSA:3.10.430.100 61 147 3.5E-22 T 21-04-2016 IPR020069 Ribosomal protein L9, C-terminal RAF_RS00345 8d11f7d678e4af6db106d71681f11223 171 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 146 5.0E-33 T 21-04-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00345 8d11f7d678e4af6db106d71681f11223 171 SUPERFAMILY SSF55658 1 57 1.53E-15 T 21-04-2016 IPR009027 Ribosomal protein L9/RNase H1, N-terminal RAF_RS00345 8d11f7d678e4af6db106d71681f11223 171 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 45 3.4E-19 T 21-04-2016 IPR020070 Ribosomal protein L9, N-terminal RAF_RS03080 6fe80d68d96b88e10790736df9f51e3f 386 Gene3D G3DSA:3.30.470.20 96 239 3.1E-59 T 21-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 RAF_RS03080 6fe80d68d96b88e10790736df9f51e3f 386 Gene3D G3DSA:3.40.50.261 240 383 6.9E-65 T 21-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RAF_RS03080 6fe80d68d96b88e10790736df9f51e3f 386 Pfam PF00549 CoA-ligase 262 381 7.9E-26 T 21-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RAF_RS03080 6fe80d68d96b88e10790736df9f51e3f 386 Gene3D G3DSA:3.30.1490.20 22 95 1.2E-32 T 21-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RAF_RS03080 6fe80d68d96b88e10790736df9f51e3f 386 Hamap MF_00558 Succinyl-CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 42.806 T 21-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RAF_RS03080 6fe80d68d96b88e10790736df9f51e3f 386 PIRSF PIRSF001554 1 386 1.2E-152 T 21-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RAF_RS03080 6fe80d68d96b88e10790736df9f51e3f 386 PANTHER PTHR11815 1 386 2.6E-223 T 21-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RAF_RS03080 6fe80d68d96b88e10790736df9f51e3f 386 PANTHER PTHR11815:SF1 1 386 2.6E-223 T 21-04-2016 RAF_RS03080 6fe80d68d96b88e10790736df9f51e3f 386 Pfam PF08442 ATP-grasp domain 2 202 7.6E-85 T 21-04-2016 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RAF_RS03080 6fe80d68d96b88e10790736df9f51e3f 386 SUPERFAMILY SSF52210 239 384 2.88E-54 T 21-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RAF_RS03080 6fe80d68d96b88e10790736df9f51e3f 386 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 281 - T 21-04-2016 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 RAF_RS03080 6fe80d68d96b88e10790736df9f51e3f 386 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 385 9.8E-181 T 21-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 RAF_RS03080 6fe80d68d96b88e10790736df9f51e3f 386 SUPERFAMILY SSF56059 1 238 5.5E-80 T 21-04-2016 RAF_RS05160 a3201624bd60675f406426d367656852 240 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 13 79 1.9E-11 T 21-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 RAF_RS05160 a3201624bd60675f406426d367656852 240 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 13 237 1.9E-56 T 21-04-2016 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 RAF_RS05160 a3201624bd60675f406426d367656852 240 SMART SM00967 13 83 1.0E-10 T 21-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 RAF_RS05160 a3201624bd60675f406426d367656852 240 Pfam PF00588 SpoU rRNA Methylase family 98 235 1.6E-36 T 21-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RAF_RS05160 a3201624bd60675f406426d367656852 240 SUPERFAMILY SSF75217 71 239 2.09E-40 T 21-04-2016 IPR029028 Alpha/beta knot methyltransferases RAF_RS05160 a3201624bd60675f406426d367656852 240 PANTHER PTHR12029 15 238 3.7E-55 T 21-04-2016 RAF_RS05160 a3201624bd60675f406426d367656852 240 SUPERFAMILY SSF55315 8 79 9.18E-12 T 21-04-2016 IPR029064 50S ribosomal protein L30e-like RAF_RS05160 a3201624bd60675f406426d367656852 240 Gene3D G3DSA:3.40.1280.10 97 238 6.1E-43 T 21-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RAF_RS05160 a3201624bd60675f406426d367656852 240 Gene3D G3DSA:3.30.1330.30 13 79 1.1E-8 T 21-04-2016 IPR029064 50S ribosomal protein L30e-like RAF_RS02660 6215a003442194f26faed2ab914087b0 314 PIRSF PIRSF000102 1 314 1.5E-105 T 21-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RAF_RS02660 6215a003442194f26faed2ab914087b0 314 Gene3D G3DSA:3.40.50.720 2 145 2.3E-52 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS02660 6215a003442194f26faed2ab914087b0 314 Gene3D G3DSA:3.90.110.10 146 314 1.2E-56 T 21-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RAF_RS02660 6215a003442194f26faed2ab914087b0 314 SUPERFAMILY SSF51735 6 145 1.4E-49 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS02660 6215a003442194f26faed2ab914087b0 314 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 148 313 8.9E-29 T 21-04-2016 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 RAF_RS02660 6215a003442194f26faed2ab914087b0 314 SUPERFAMILY SSF56327 145 313 9.08E-53 T 21-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RAF_RS02660 6215a003442194f26faed2ab914087b0 314 PANTHER PTHR11540 2 311 3.8E-155 T 21-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RAF_RS02660 6215a003442194f26faed2ab914087b0 314 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 6 144 1.6E-42 T 21-04-2016 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 RAF_RS02660 6215a003442194f26faed2ab914087b0 314 PANTHER PTHR11540:SF16 2 311 3.8E-155 T 21-04-2016 RAF_RS02660 6215a003442194f26faed2ab914087b0 314 PRINTS PR00086 L-lactate dehydrogenase signature 142 160 1.7E-30 T 21-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RAF_RS02660 6215a003442194f26faed2ab914087b0 314 PRINTS PR00086 L-lactate dehydrogenase signature 30 54 1.7E-30 T 21-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RAF_RS02660 6215a003442194f26faed2ab914087b0 314 PRINTS PR00086 L-lactate dehydrogenase signature 6 30 1.7E-30 T 21-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RAF_RS02660 6215a003442194f26faed2ab914087b0 314 PRINTS PR00086 L-lactate dehydrogenase signature 172 185 1.7E-30 T 21-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RAF_RS02660 6215a003442194f26faed2ab914087b0 314 PRINTS PR00086 L-lactate dehydrogenase signature 118 138 1.7E-30 T 21-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RAF_RS02660 6215a003442194f26faed2ab914087b0 314 Hamap MF_00487 Malate dehydrogenase [mdh]. 5 314 43.009 T 21-04-2016 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 RAF_RS02660 6215a003442194f26faed2ab914087b0 314 TIGRFAM TIGR01763 MalateDH_bact: malate dehydrogenase, NAD-dependent 6 312 2.0E-126 T 21-04-2016 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 RAF_RS01800 a258c1f554a21b275e48f9389d8e5b99 326 TIGRFAM TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 12 325 1.6E-147 T 21-04-2016 IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y GO:0004739|GO:0006086|GO:0043231 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 RAF_RS01800 a258c1f554a21b275e48f9389d8e5b99 326 SUPERFAMILY SSF52518 7 326 5.16E-101 T 21-04-2016 IPR029061 Thiamin diphosphate-binding fold RAF_RS01800 a258c1f554a21b275e48f9389d8e5b99 326 Pfam PF00676 Dehydrogenase E1 component 21 315 1.2E-92 T 21-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 RAF_RS01800 a258c1f554a21b275e48f9389d8e5b99 326 PANTHER PTHR11516 11 326 4.8E-148 T 21-04-2016 RAF_RS01800 a258c1f554a21b275e48f9389d8e5b99 326 PANTHER PTHR11516:SF40 11 326 4.8E-148 T 21-04-2016 RAF_RS01800 a258c1f554a21b275e48f9389d8e5b99 326 Gene3D G3DSA:3.40.50.970 9 325 1.9E-123 T 21-04-2016 IPR029061 Thiamin diphosphate-binding fold RAF_RS01470 f4f8cb8b21334ae670b17eb90de6e4c0 365 Pfam PF02547 Queuosine biosynthesis protein 3 362 6.1E-119 T 21-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 RAF_RS01470 f4f8cb8b21334ae670b17eb90de6e4c0 365 PANTHER PTHR30307:SF0 181 362 3.4E-128 T 21-04-2016 RAF_RS01470 f4f8cb8b21334ae670b17eb90de6e4c0 365 PANTHER PTHR30307:SF0 2 150 3.4E-128 T 21-04-2016 RAF_RS01470 f4f8cb8b21334ae670b17eb90de6e4c0 365 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 363 41.218 T 21-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 RAF_RS01470 f4f8cb8b21334ae670b17eb90de6e4c0 365 Gene3D G3DSA:3.40.1780.10 1 59 2.7E-94 T 21-04-2016 RAF_RS01470 f4f8cb8b21334ae670b17eb90de6e4c0 365 Gene3D G3DSA:3.40.1780.10 201 362 2.7E-94 T 21-04-2016 RAF_RS01470 f4f8cb8b21334ae670b17eb90de6e4c0 365 PANTHER PTHR30307 181 362 3.4E-128 T 21-04-2016 RAF_RS01470 f4f8cb8b21334ae670b17eb90de6e4c0 365 PANTHER PTHR30307 2 150 3.4E-128 T 21-04-2016 RAF_RS01470 f4f8cb8b21334ae670b17eb90de6e4c0 365 SUPERFAMILY SSF111337 179 362 2.75E-113 T 21-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 RAF_RS01470 f4f8cb8b21334ae670b17eb90de6e4c0 365 SUPERFAMILY SSF111337 4 148 2.75E-113 T 21-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 RAF_RS01470 f4f8cb8b21334ae670b17eb90de6e4c0 365 Gene3D G3DSA:2.40.10.240 68 127 8.8E-9 T 21-04-2016 RAF_RS00895 5c0e69ac2908e8cddbac7ee3155ba1ba 160 PIRSF PIRSF002122 2 157 4.9E-52 T 21-04-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 RAF_RS00895 5c0e69ac2908e8cddbac7ee3155ba1ba 160 PANTHER PTHR11205 1 156 2.3E-69 T 21-04-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 RAF_RS00895 5c0e69ac2908e8cddbac7ee3155ba1ba 160 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 21-04-2016 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 RAF_RS00895 5c0e69ac2908e8cddbac7ee3155ba1ba 160 Gene3D G3DSA:1.10.455.10 7 154 1.9E-57 T 21-04-2016 IPR023798 Ribosomal protein S7 domain RAF_RS00895 5c0e69ac2908e8cddbac7ee3155ba1ba 160 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 4.1E-61 T 21-04-2016 IPR023798 Ribosomal protein S7 domain RAF_RS00895 5c0e69ac2908e8cddbac7ee3155ba1ba 160 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 155 3.0E-67 T 21-04-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 RAF_RS00895 5c0e69ac2908e8cddbac7ee3155ba1ba 160 SUPERFAMILY SSF47973 4 149 6.28E-57 T 21-04-2016 IPR023798 Ribosomal protein S7 domain RAF_RS00895 5c0e69ac2908e8cddbac7ee3155ba1ba 160 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 32.946 T 21-04-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 RAF_RS02040 da4c8e6aa555a226646bbce8569e9d27 470 Gene3D G3DSA:3.30.420.40 1 118 5.3E-18 T 21-04-2016 RAF_RS02040 da4c8e6aa555a226646bbce8569e9d27 470 SUPERFAMILY SSF53067 125 282 1.17E-21 T 21-04-2016 RAF_RS02040 da4c8e6aa555a226646bbce8569e9d27 470 SUPERFAMILY SSF53067 2 119 2.59E-19 T 21-04-2016 RAF_RS02040 da4c8e6aa555a226646bbce8569e9d27 470 PANTHER PTHR30005 1 370 3.4E-24 T 21-04-2016 RAF_RS02040 da4c8e6aa555a226646bbce8569e9d27 470 Gene3D G3DSA:3.30.420.150 126 281 6.1E-13 T 21-04-2016 RAF_RS02040 da4c8e6aa555a226646bbce8569e9d27 470 Pfam PF02541 Ppx/GppA phosphatase family 25 282 5.7E-73 T 21-04-2016 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40|UniPathway: UPA00908 RAF_RS02525 640855a6ec00a2611e461d7a111e9027 339 ProDom PD210175 RP364 RP363 102 336 8.0E-104 T 21-04-2016 IPR020168 Uncharacterised protein family RP364 RAF_RS01185 5df7fc765489b035b4d5290f9e6e09b2 104 Pfam PF03091 CutA1 divalent ion tolerance protein 5 101 6.2E-30 T 21-04-2016 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 RAF_RS01185 5df7fc765489b035b4d5290f9e6e09b2 104 PANTHER PTHR23419:SF0 6 102 1.1E-21 T 21-04-2016 RAF_RS01185 5df7fc765489b035b4d5290f9e6e09b2 104 SUPERFAMILY SSF54913 2 102 2.93E-33 T 21-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta RAF_RS01185 5df7fc765489b035b4d5290f9e6e09b2 104 PANTHER PTHR23419 6 102 1.1E-21 T 21-04-2016 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 RAF_RS01185 5df7fc765489b035b4d5290f9e6e09b2 104 Gene3D G3DSA:3.30.70.830 2 102 9.4E-35 T 21-04-2016 RAF_RS05110 40d3aefc39f46c417290e9dae46c7ab7 119 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 11 113 7.2E-31 T 21-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 RAF_RS05110 40d3aefc39f46c417290e9dae46c7ab7 119 Gene3D G3DSA:3.90.470.10 9 117 6.3E-38 T 21-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 RAF_RS05110 40d3aefc39f46c417290e9dae46c7ab7 119 ProSitePatterns PS00464 Ribosomal protein L22 signature. 89 113 - T 21-04-2016 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05110 40d3aefc39f46c417290e9dae46c7ab7 119 PANTHER PTHR13501 11 115 1.7E-41 T 21-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 RAF_RS05110 40d3aefc39f46c417290e9dae46c7ab7 119 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 7 116 23.669 T 21-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 RAF_RS05110 40d3aefc39f46c417290e9dae46c7ab7 119 Pfam PF00237 Ribosomal protein L22p/L17e 14 113 2.9E-29 T 21-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 RAF_RS05110 40d3aefc39f46c417290e9dae46c7ab7 119 SUPERFAMILY SSF54843 5 118 2.35E-40 T 21-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 RAF_RS00470 bf1bbed84a5a75f67995c53d51a132ad 105 Pfam PF10878 Protein of unknown function (DUF2672) 24 92 9.9E-43 T 21-04-2016 IPR022718 Protein of unknown function DUF2672 RAF_RS00470 bf1bbed84a5a75f67995c53d51a132ad 105 ProDom PD197221 RP061 TRANSMEMBRANE MEMBRANE RC0089 34 105 3.0E-34 T 21-04-2016 IPR022718 Protein of unknown function DUF2672 RAF_RS03925 c551a573910a57e21295541cacf64a3e 281 PANTHER PTHR12124:SF42 1 274 1.1E-42 T 21-04-2016 RAF_RS03925 c551a573910a57e21295541cacf64a3e 281 SUPERFAMILY SSF53098 2 203 5.93E-59 T 21-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RAF_RS03925 c551a573910a57e21295541cacf64a3e 281 SMART SM00341 207 280 0.0011 T 21-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 RAF_RS03925 c551a573910a57e21295541cacf64a3e 281 Gene3D G3DSA:1.10.150.80 215 276 7.7E-4 T 21-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 RAF_RS03925 c551a573910a57e21295541cacf64a3e 281 Pfam PF01612 3'-5' exonuclease 1 168 1.1E-48 T 21-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RAF_RS03925 c551a573910a57e21295541cacf64a3e 281 PANTHER PTHR12124 1 274 1.1E-42 T 21-04-2016 RAF_RS03925 c551a573910a57e21295541cacf64a3e 281 Gene3D G3DSA:3.30.420.10 2 186 2.0E-17 T 21-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 RAF_RS03925 c551a573910a57e21295541cacf64a3e 281 SMART SM00474 1 169 9.5E-50 T 21-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RAF_RS03925 c551a573910a57e21295541cacf64a3e 281 SUPERFAMILY SSF47819 193 280 1.37E-11 T 21-04-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 RAF_RS05065 e0cbed00c1d895cc78153b871735edc9 132 ProSitePatterns PS00053 Ribosomal protein S8 signature. 102 119 - T 21-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 RAF_RS05065 e0cbed00c1d895cc78153b871735edc9 132 PANTHER PTHR11758:SF4 1 132 6.1E-40 T 21-04-2016 RAF_RS05065 e0cbed00c1d895cc78153b871735edc9 132 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 132 27.372 T 21-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 RAF_RS05065 e0cbed00c1d895cc78153b871735edc9 132 PANTHER PTHR11758 1 132 6.1E-40 T 21-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 RAF_RS05065 e0cbed00c1d895cc78153b871735edc9 132 Pfam PF00410 Ribosomal protein S8 5 132 1.1E-42 T 21-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 RAF_RS05065 e0cbed00c1d895cc78153b871735edc9 132 Gene3D G3DSA:3.30.1490.10 76 132 5.4E-23 T 21-04-2016 RAF_RS05065 e0cbed00c1d895cc78153b871735edc9 132 SUPERFAMILY SSF56047 2 132 4.06E-43 T 21-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 RAF_RS05065 e0cbed00c1d895cc78153b871735edc9 132 Gene3D G3DSA:3.30.1370.30 2 70 1.4E-23 T 21-04-2016 RAF_RS02110 ce2d67b0534a42b9bbb292a3883da941 294 Pfam PF02511 Thymidylate synthase complementing protein 30 241 3.7E-57 T 21-04-2016 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|KEGG: 00670+2.1.1.148|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6545|MetaCyc: PWY-6936|MetaCyc: PWY-702 RAF_RS02110 ce2d67b0534a42b9bbb292a3883da941 294 SUPERFAMILY SSF69796 20 255 2.62E-72 T 21-04-2016 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|KEGG: 00670+2.1.1.148|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6545|MetaCyc: PWY-6936|MetaCyc: PWY-702 RAF_RS02110 ce2d67b0534a42b9bbb292a3883da941 294 PANTHER PTHR34934 22 293 9.5E-53 T 21-04-2016 RAF_RS02110 ce2d67b0534a42b9bbb292a3883da941 294 TIGRFAM TIGR02170 thyX: thymidylate synthase, flavin-dependent 28 247 2.3E-72 T 21-04-2016 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|KEGG: 00670+2.1.1.148|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6545|MetaCyc: PWY-6936|MetaCyc: PWY-702 RAF_RS02110 ce2d67b0534a42b9bbb292a3883da941 294 Hamap MF_01408 Thymidylate synthase ThyX [thyX]. 24 255 29.881 T 21-04-2016 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|KEGG: 00670+2.1.1.148|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6545|MetaCyc: PWY-6936|MetaCyc: PWY-702 RAF_RS04560 e979c8788fda7d6aae5b3c9b8a6c6518 518 PRINTS PR00702 Acriflavin resistance protein family signature 405 429 5.2E-5 T 21-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RAF_RS04560 e979c8788fda7d6aae5b3c9b8a6c6518 518 PRINTS PR00702 Acriflavin resistance protein family signature 480 503 5.2E-5 T 21-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RAF_RS04560 e979c8788fda7d6aae5b3c9b8a6c6518 518 PRINTS PR00702 Acriflavin resistance protein family signature 377 398 5.2E-5 T 21-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RAF_RS04560 e979c8788fda7d6aae5b3c9b8a6c6518 518 Gene3D G3DSA:1.20.1640.10 313 514 1.5E-28 T 21-04-2016 RAF_RS04560 e979c8788fda7d6aae5b3c9b8a6c6518 518 Pfam PF02355 Protein export membrane protein 337 504 1.1E-17 T 21-04-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial RAF_RS04560 e979c8788fda7d6aae5b3c9b8a6c6518 518 SUPERFAMILY SSF82866 313 511 3.79E-45 T 21-04-2016 RAF_RS04560 e979c8788fda7d6aae5b3c9b8a6c6518 518 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 266 496 5.4E-81 T 21-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RAF_RS04560 e979c8788fda7d6aae5b3c9b8a6c6518 518 PANTHER PTHR30081:SF1 24 92 2.9E-136 T 21-04-2016 RAF_RS04560 e979c8788fda7d6aae5b3c9b8a6c6518 518 PANTHER PTHR30081 234 518 2.9E-136 T 21-04-2016 RAF_RS04560 e979c8788fda7d6aae5b3c9b8a6c6518 518 PANTHER PTHR30081 24 92 2.9E-136 T 21-04-2016 RAF_RS04560 e979c8788fda7d6aae5b3c9b8a6c6518 518 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 2 516 42.204 T 21-04-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 RAF_RS04560 e979c8788fda7d6aae5b3c9b8a6c6518 518 PANTHER PTHR30081:SF1 141 199 2.9E-136 T 21-04-2016 RAF_RS04560 e979c8788fda7d6aae5b3c9b8a6c6518 518 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 42 503 1.9E-151 T 21-04-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 RAF_RS04560 e979c8788fda7d6aae5b3c9b8a6c6518 518 PANTHER PTHR30081:SF1 234 518 2.9E-136 T 21-04-2016 RAF_RS04560 e979c8788fda7d6aae5b3c9b8a6c6518 518 PANTHER PTHR30081 141 199 2.9E-136 T 21-04-2016 RAF_RS05985 38ac0d2ded45ce6ff66ebf254a357ac0 433 ProDom PD215945 TRANSMEMBRANE MEMBRANE RP760 59 420 0.0 T 21-04-2016 IPR020182 Uncharacterised protein family RP760 RAF_RS04890 7fbfb78f9779947803af74715d4b891c 253 SUPERFAMILY SSF81345 5 250 1.22E-23 T 21-04-2016 IPR029022 ABC transporter, BtuC-like RAF_RS04890 7fbfb78f9779947803af74715d4b891c 253 PANTHER PTHR30477:SF0 5 253 1.2E-37 T 21-04-2016 RAF_RS04890 7fbfb78f9779947803af74715d4b891c 253 Gene3D G3DSA:1.10.3470.10 44 250 2.4E-8 T 21-04-2016 IPR029022 ABC transporter, BtuC-like RAF_RS04890 7fbfb78f9779947803af74715d4b891c 253 PANTHER PTHR30477 5 253 1.2E-37 T 21-04-2016 RAF_RS04890 7fbfb78f9779947803af74715d4b891c 253 Pfam PF00950 ABC 3 transport family 4 244 4.0E-40 T 21-04-2016 IPR001626 ABC-3 GO:0005524|GO:0006810|GO:0016020|GO:0042626 RAF_RS00025 dddcf4f709004e7b5e7237988b685947 1033 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 382 576 2.8E-7 T 21-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAF_RS00025 dddcf4f709004e7b5e7237988b685947 1033 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 546 570 9.5E-5 T 21-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAF_RS00025 dddcf4f709004e7b5e7237988b685947 1033 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 383 405 9.5E-5 T 21-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RAF_RS00025 dddcf4f709004e7b5e7237988b685947 1033 Gene3D G3DSA:3.50.50.60 622 723 4.6E-14 T 21-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAF_RS00025 dddcf4f709004e7b5e7237988b685947 1033 Gene3D G3DSA:3.50.50.60 501 569 4.6E-14 T 21-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAF_RS00025 dddcf4f709004e7b5e7237988b685947 1033 Gene3D G3DSA:1.10.1060.10 277 351 1.2E-5 T 21-04-2016 RAF_RS00025 dddcf4f709004e7b5e7237988b685947 1033 Gene3D G3DSA:1.10.1060.10 209 234 1.2E-5 T 21-04-2016 RAF_RS00025 dddcf4f709004e7b5e7237988b685947 1033 Gene3D G3DSA:3.40.50.720 474 500 5.1E-5 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS00025 dddcf4f709004e7b5e7237988b685947 1033 Gene3D G3DSA:3.40.50.720 380 418 5.1E-5 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS00025 dddcf4f709004e7b5e7237988b685947 1033 SUPERFAMILY SSF51971 710 723 2.0E-19 T 21-04-2016 RAF_RS00025 dddcf4f709004e7b5e7237988b685947 1033 SUPERFAMILY SSF51971 380 413 2.0E-19 T 21-04-2016 RAF_RS00025 dddcf4f709004e7b5e7237988b685947 1033 SUPERFAMILY SSF51971 442 571 2.0E-19 T 21-04-2016 RAF_RS00025 dddcf4f709004e7b5e7237988b685947 1033 SUPERFAMILY SSF51971 624 679 2.0E-19 T 21-04-2016 RAF_RS00025 dddcf4f709004e7b5e7237988b685947 1033 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 550 568 8.6E-5 T 21-04-2016 RAF_RS00025 dddcf4f709004e7b5e7237988b685947 1033 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 384 403 8.6E-5 T 21-04-2016 RAF_RS00025 dddcf4f709004e7b5e7237988b685947 1033 Gene3D G3DSA:2.40.30.10 791 883 1.8E-12 T 21-04-2016 RAF_RS00025 dddcf4f709004e7b5e7237988b685947 1033 SUPERFAMILY SSF63380 790 884 1.63E-11 T 21-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 RAF_RS03065 b4bcc7160ca8108e48e1f7f4fe452674 152 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 8 132 1.0E-58 T 21-04-2016 IPR000037 SsrA-binding protein GO:0003723 RAF_RS03065 b4bcc7160ca8108e48e1f7f4fe452674 152 PANTHER PTHR30308:SF2 6 151 1.8E-71 T 21-04-2016 RAF_RS03065 b4bcc7160ca8108e48e1f7f4fe452674 152 Gene3D G3DSA:2.40.280.10 6 127 3.3E-48 T 21-04-2016 IPR023620 Small protein B RAF_RS03065 b4bcc7160ca8108e48e1f7f4fe452674 152 TIGRFAM TIGR00086 smpB: SsrA-binding protein 7 149 8.1E-56 T 21-04-2016 IPR000037 SsrA-binding protein GO:0003723 RAF_RS03065 b4bcc7160ca8108e48e1f7f4fe452674 152 Pfam PF01668 SmpB protein 7 71 1.4E-26 T 21-04-2016 IPR000037 SsrA-binding protein GO:0003723 RAF_RS03065 b4bcc7160ca8108e48e1f7f4fe452674 152 SUPERFAMILY SSF74982 5 132 3.66E-47 T 21-04-2016 IPR023620 Small protein B RAF_RS03065 b4bcc7160ca8108e48e1f7f4fe452674 152 Hamap MF_00023 SsrA-binding protein [smpB]. 1 152 67.985 T 21-04-2016 IPR000037 SsrA-binding protein GO:0003723 RAF_RS03065 b4bcc7160ca8108e48e1f7f4fe452674 152 PANTHER PTHR30308 6 151 1.8E-71 T 21-04-2016 RAF_RS00500 a76e95d527e5b93bfc4bc7ffc01ce708 224 Gene3D G3DSA:3.30.70.1070 142 223 4.2E-4 T 21-04-2016 IPR007730 Sporulation-related domain GO:0042834 RAF_RS00500 a76e95d527e5b93bfc4bc7ffc01ce708 224 Pfam PF05036 Sporulation related domain 144 222 1.1E-11 T 21-04-2016 IPR007730 Sporulation-related domain GO:0042834 RAF_RS00500 a76e95d527e5b93bfc4bc7ffc01ce708 224 SUPERFAMILY SSF110997 143 220 2.75E-5 T 21-04-2016 IPR007730 Sporulation-related domain GO:0042834 RAF_RS01400 50327b3520c25af72d041b32a1cbb3fc 80 SUPERFAMILY SSF118215 3 78 4.84E-7 T 21-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RAF_RS02430 b65fbf4643d09a47e4a63c40073411bc 830 PANTHER PTHR30441 9 751 2.2E-18 T 21-04-2016 RAF_RS02430 b65fbf4643d09a47e4a63c40073411bc 830 Pfam PF05170 AsmA family 1 705 1.1E-184 T 21-04-2016 IPR007844 AsmA RAF_RS06940 e7945534a638a3273df6db2c4da63421 610 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 1 608 27.25 T 21-04-2016 IPR020667 DNA mismatch repair protein, MutL GO:0006298 RAF_RS06940 e7945534a638a3273df6db2c4da63421 610 Gene3D G3DSA:3.30.230.10 204 329 3.6E-37 T 21-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAF_RS06940 e7945534a638a3273df6db2c4da63421 610 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 24 124 1.8E-12 T 21-04-2016 RAF_RS06940 e7945534a638a3273df6db2c4da63421 610 Gene3D G3DSA:3.30.565.10 1 203 2.7E-67 T 21-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RAF_RS06940 e7945534a638a3273df6db2c4da63421 610 SMART SM00853 424 568 1.3E-40 T 21-04-2016 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 RAF_RS06940 e7945534a638a3273df6db2c4da63421 610 PANTHER PTHR10073 3 608 2.6E-130 T 21-04-2016 RAF_RS06940 e7945534a638a3273df6db2c4da63421 610 SUPERFAMILY SSF54211 189 329 1.9E-35 T 21-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RAF_RS06940 e7945534a638a3273df6db2c4da63421 610 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 1 310 5.2E-92 T 21-04-2016 IPR002099 DNA mismatch repair protein family GO:0005524|GO:0006298|GO:0030983 RAF_RS06940 e7945534a638a3273df6db2c4da63421 610 Pfam PF08676 MutL C terminal dimerisation domain 421 568 6.5E-45 T 21-04-2016 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 RAF_RS06940 e7945534a638a3273df6db2c4da63421 610 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 213 329 5.6E-37 T 21-04-2016 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 RAF_RS06940 e7945534a638a3273df6db2c4da63421 610 SMART SM01340 212 330 3.8E-52 T 21-04-2016 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 RAF_RS06940 e7945534a638a3273df6db2c4da63421 610 SUPERFAMILY SSF118116 420 610 9.42E-52 T 21-04-2016 RAF_RS06940 e7945534a638a3273df6db2c4da63421 610 SUPERFAMILY SSF55874 1 201 2.56E-49 T 21-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RAF_RS06940 e7945534a638a3273df6db2c4da63421 610 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 92 98 - T 21-04-2016 IPR014762 DNA mismatch repair, conserved site RAF_RS02685 63e752a97c6b07f00274d460e67dae9c 246 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 7 232 1.2E-53 T 21-04-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 RAF_RS02685 63e752a97c6b07f00274d460e67dae9c 246 Pfam PF02348 Cytidylyltransferase 7 213 1.2E-55 T 21-04-2016 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 RAF_RS02685 63e752a97c6b07f00274d460e67dae9c 246 PANTHER PTHR21485 6 234 2.7E-72 T 21-04-2016 RAF_RS02685 63e752a97c6b07f00274d460e67dae9c 246 SUPERFAMILY SSF53448 6 239 5.18E-45 T 21-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RAF_RS02685 63e752a97c6b07f00274d460e67dae9c 246 PANTHER PTHR21485:SF4 6 234 2.7E-72 T 21-04-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 RAF_RS02685 63e752a97c6b07f00274d460e67dae9c 246 Gene3D G3DSA:3.90.550.10 6 240 1.8E-57 T 21-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RAF_RS02685 63e752a97c6b07f00274d460e67dae9c 246 Hamap MF_00057 3-deoxy-manno-octulosonate cytidylyltransferase [kdsB]. 4 239 33.686 T 21-04-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 RAF_RS00250 9ff9e8c4f8ab0917ab5dd96fc48ca1c5 104 Pfam PF03797 Autotransporter beta-domain 1 100 4.2E-7 T 21-04-2016 IPR005546 Autotransporter beta-domain RAF_RS00250 9ff9e8c4f8ab0917ab5dd96fc48ca1c5 104 SUPERFAMILY SSF103515 3 104 3.27E-9 T 21-04-2016 IPR005546 Autotransporter beta-domain RAF_RS00250 9ff9e8c4f8ab0917ab5dd96fc48ca1c5 104 ProDom PD500946 RC0047 SURFACE SCA10 CELL ANTIGEN-LIKE 50 87 7.0E-16 T 21-04-2016 RAF_RS02990 5f3badaf03ef279f74b9ef74b2d63ca6 416 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 137 157 - T 21-04-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 RAF_RS02990 5f3badaf03ef279f74b9ef74b2d63ca6 416 SUPERFAMILY SSF102114 102 352 4.45E-54 T 21-04-2016 RAF_RS02990 5f3badaf03ef279f74b9ef74b2d63ca6 416 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 8 411 4.8E-109 T 21-04-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 RAF_RS02990 5f3badaf03ef279f74b9ef74b2d63ca6 416 SMART SM00729 133 351 4.2E-56 T 21-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 RAF_RS02990 5f3badaf03ef279f74b9ef74b2d63ca6 416 Gene3D G3DSA:3.80.30.20 134 360 4.1E-67 T 21-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe RAF_RS02990 5f3badaf03ef279f74b9ef74b2d63ca6 416 TIGRFAM TIGR01579 MiaB-like-C: MiaB-like tRNA modifying enzyme 10 391 1.8E-133 T 21-04-2016 IPR006467 MiaB-like tRNA modifying enzyme GO:0016740 RAF_RS02990 5f3badaf03ef279f74b9ef74b2d63ca6 416 PANTHER PTHR11918:SF45 9 412 4.8E-120 T 21-04-2016 RAF_RS02990 5f3badaf03ef279f74b9ef74b2d63ca6 416 Pfam PF00919 Uncharacterized protein family UPF0004 8 93 1.1E-16 T 21-04-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 RAF_RS02990 5f3badaf03ef279f74b9ef74b2d63ca6 416 Pfam PF04055 Radical SAM superfamily 138 310 3.9E-24 T 21-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 RAF_RS02990 5f3badaf03ef279f74b9ef74b2d63ca6 416 PANTHER PTHR11918 9 412 4.8E-120 T 21-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein RAF_RS01180 9056e24f3aebf1bddf9a36b3a8dffbd0 399 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 30 45 - T 21-04-2016 IPR018107 Sodium:dicarboxylate symporter, conserved site Reactome: REACT_15518|Reactome: REACT_19419 RAF_RS01180 9056e24f3aebf1bddf9a36b3a8dffbd0 399 PANTHER PTHR11958 1 398 8.6E-280 T 21-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RAF_RS01180 9056e24f3aebf1bddf9a36b3a8dffbd0 399 PANTHER PTHR11958:SF65 1 398 8.6E-280 T 21-04-2016 RAF_RS01180 9056e24f3aebf1bddf9a36b3a8dffbd0 399 Gene3D G3DSA:1.10.3860.10 2 394 1.1E-122 T 21-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RAF_RS01180 9056e24f3aebf1bddf9a36b3a8dffbd0 399 SUPERFAMILY SSF118215 3 388 1.7E-115 T 21-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RAF_RS01180 9056e24f3aebf1bddf9a36b3a8dffbd0 399 Pfam PF00375 Sodium:dicarboxylate symporter family 3 387 1.7E-122 T 21-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RAF_RS01180 9056e24f3aebf1bddf9a36b3a8dffbd0 399 PRINTS PR00173 Glutamate-aspartate symporter signature 68 93 1.6E-31 T 21-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RAF_RS01180 9056e24f3aebf1bddf9a36b3a8dffbd0 399 PRINTS PR00173 Glutamate-aspartate symporter signature 315 334 1.6E-31 T 21-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RAF_RS01180 9056e24f3aebf1bddf9a36b3a8dffbd0 399 PRINTS PR00173 Glutamate-aspartate symporter signature 1 21 1.6E-31 T 21-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RAF_RS01180 9056e24f3aebf1bddf9a36b3a8dffbd0 399 PRINTS PR00173 Glutamate-aspartate symporter signature 280 306 1.6E-31 T 21-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RAF_RS01180 9056e24f3aebf1bddf9a36b3a8dffbd0 399 PRINTS PR00173 Glutamate-aspartate symporter signature 342 362 1.6E-31 T 21-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RAF_RS02175 c679ee70443eeb5b62da595c4303ad95 241 PANTHER PTHR30625 20 241 2.0E-58 T 21-04-2016 RAF_RS02175 c679ee70443eeb5b62da595c4303ad95 241 TIGRFAM TIGR02796 tolQ: protein TolQ 20 234 2.5E-78 T 21-04-2016 IPR014163 Tol-Pal system, TolQ GO:0015031|GO:0016021 RAF_RS02175 c679ee70443eeb5b62da595c4303ad95 241 Pfam PF01618 MotA/TolQ/ExbB proton channel family 92 222 1.6E-41 T 21-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 RAF_RS02175 c679ee70443eeb5b62da595c4303ad95 241 PANTHER PTHR30625:SF3 20 241 2.0E-58 T 21-04-2016 RAF_RS00390 2f87478b7380fa25e55b034d0d35a30e 560 Pfam PF14849 YidC periplasmic domain 71 349 9.4E-72 T 21-04-2016 IPR028053 Membrane insertase YidC, N-terminal RAF_RS00390 2f87478b7380fa25e55b034d0d35a30e 560 PRINTS PR01900 YidC translocation/secretion protein signature 513 537 1.6E-24 T 21-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RAF_RS00390 2f87478b7380fa25e55b034d0d35a30e 560 PRINTS PR01900 YidC translocation/secretion protein signature 346 362 1.6E-24 T 21-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RAF_RS00390 2f87478b7380fa25e55b034d0d35a30e 560 PRINTS PR01900 YidC translocation/secretion protein signature 494 509 1.6E-24 T 21-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RAF_RS00390 2f87478b7380fa25e55b034d0d35a30e 560 Pfam PF02096 60Kd inner membrane protein 361 558 5.1E-60 T 21-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RAF_RS00390 2f87478b7380fa25e55b034d0d35a30e 560 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 7 359 4.3E-94 T 21-04-2016 IPR028053 Membrane insertase YidC, N-terminal RAF_RS00390 2f87478b7380fa25e55b034d0d35a30e 560 PRINTS PR00701 60kDa inner membrane protein signature 331 351 1.0E-15 T 21-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RAF_RS00390 2f87478b7380fa25e55b034d0d35a30e 560 PRINTS PR00701 60kDa inner membrane protein signature 250 265 1.0E-15 T 21-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RAF_RS00390 2f87478b7380fa25e55b034d0d35a30e 560 PRINTS PR00701 60kDa inner membrane protein signature 422 445 1.0E-15 T 21-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RAF_RS00390 2f87478b7380fa25e55b034d0d35a30e 560 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 6 560 22.222 T 21-04-2016 IPR019998 Membrane insertase YidC GO:0016021|GO:0051205 RAF_RS00390 2f87478b7380fa25e55b034d0d35a30e 560 PANTHER PTHR12428 172 470 4.8E-74 T 21-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RAF_RS00390 2f87478b7380fa25e55b034d0d35a30e 560 PANTHER PTHR12428 490 558 4.8E-74 T 21-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 RAF_RS00390 2f87478b7380fa25e55b034d0d35a30e 560 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 360 558 8.2E-69 T 21-04-2016 IPR028055 Membrane insertase YidC/Oxa1, C-terminal RAF_RS00390 2f87478b7380fa25e55b034d0d35a30e 560 PANTHER PTHR12428:SF14 172 470 4.8E-74 T 21-04-2016 RAF_RS00390 2f87478b7380fa25e55b034d0d35a30e 560 PANTHER PTHR12428:SF14 490 558 4.8E-74 T 21-04-2016 RAF_RS02585 178702aa0b71e54df51803bcb3fb76c8 31 Gene3D G3DSA:1.25.40.20 5 29 1.1E-4 T 21-04-2016 IPR020683 Ankyrin repeat-containing domain RAF_RS02585 178702aa0b71e54df51803bcb3fb76c8 31 SUPERFAMILY SSF48403 6 28 6.37E-5 T 21-04-2016 IPR020683 Ankyrin repeat-containing domain RAF_RS03070 2dc13b7a1d063e4a3b07327a2c4ddd08 263 PANTHER PTHR13887:SF25 34 261 7.0E-44 T 21-04-2016 RAF_RS03070 2dc13b7a1d063e4a3b07327a2c4ddd08 263 Gene3D G3DSA:3.40.30.10 98 261 3.4E-39 T 21-04-2016 IPR012336 Thioredoxin-like fold RAF_RS03070 2dc13b7a1d063e4a3b07327a2c4ddd08 263 Pfam PF01323 DSBA-like thioredoxin domain 113 255 5.5E-23 T 21-04-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 RAF_RS03070 2dc13b7a1d063e4a3b07327a2c4ddd08 263 SUPERFAMILY SSF52833 90 258 7.48E-33 T 21-04-2016 IPR012336 Thioredoxin-like fold RAF_RS03070 2dc13b7a1d063e4a3b07327a2c4ddd08 263 PANTHER PTHR13887 34 261 7.0E-44 T 21-04-2016 RAF_RS05655 8b23a3c6d53cddfaefb90514bb878540 191 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 4 181 1.5E-25 T 21-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 RAF_RS05655 8b23a3c6d53cddfaefb90514bb878540 191 PANTHER PTHR10695:SF26 1 188 1.0E-18 T 21-04-2016 RAF_RS05655 8b23a3c6d53cddfaefb90514bb878540 191 Gene3D G3DSA:3.40.50.300 1 187 8.3E-35 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05655 8b23a3c6d53cddfaefb90514bb878540 191 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 1 190 17.189 T 21-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 RAF_RS05655 8b23a3c6d53cddfaefb90514bb878540 191 Pfam PF01121 Dephospho-CoA kinase 3 169 4.5E-20 T 21-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 RAF_RS05655 8b23a3c6d53cddfaefb90514bb878540 191 SUPERFAMILY SSF52540 1 185 1.14E-20 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05655 8b23a3c6d53cddfaefb90514bb878540 191 PANTHER PTHR10695 1 188 1.0E-18 T 21-04-2016 RAF_RS05975 a0a992a7b5d2b329d9b4af41ccb88aac 1583 Gene3D G3DSA:3.40.50.720 921 1032 6.0E-36 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS05975 a0a992a7b5d2b329d9b4af41ccb88aac 1583 Gene3D G3DSA:3.40.50.720 1067 1183 6.0E-36 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS05975 a0a992a7b5d2b329d9b4af41ccb88aac 1583 PANTHER PTHR11606 659 1076 0.0 T 21-04-2016 RAF_RS05975 a0a992a7b5d2b329d9b4af41ccb88aac 1583 PANTHER PTHR11606 1101 1346 0.0 T 21-04-2016 RAF_RS05975 a0a992a7b5d2b329d9b4af41ccb88aac 1583 PANTHER PTHR11606 97 152 0.0 T 21-04-2016 RAF_RS05975 a0a992a7b5d2b329d9b4af41ccb88aac 1583 PANTHER PTHR11606 214 552 0.0 T 21-04-2016 RAF_RS05975 a0a992a7b5d2b329d9b4af41ccb88aac 1583 SUPERFAMILY SSF51735 1062 1205 3.54E-28 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS05975 a0a992a7b5d2b329d9b4af41ccb88aac 1583 SUPERFAMILY SSF51735 924 1026 3.54E-28 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS05975 a0a992a7b5d2b329d9b4af41ccb88aac 1583 SUPERFAMILY SSF53223 736 934 8.06E-21 T 21-04-2016 RAF_RS05975 a0a992a7b5d2b329d9b4af41ccb88aac 1583 PANTHER PTHR11606:SF1 659 1076 0.0 T 21-04-2016 RAF_RS05975 a0a992a7b5d2b329d9b4af41ccb88aac 1583 PANTHER PTHR11606:SF1 1101 1346 0.0 T 21-04-2016 RAF_RS05975 a0a992a7b5d2b329d9b4af41ccb88aac 1583 PANTHER PTHR11606:SF1 97 152 0.0 T 21-04-2016 RAF_RS05975 a0a992a7b5d2b329d9b4af41ccb88aac 1583 PANTHER PTHR11606:SF1 214 552 0.0 T 21-04-2016 RAF_RS05975 a0a992a7b5d2b329d9b4af41ccb88aac 1583 Pfam PF05088 Bacterial NAD-glutamate dehydrogenase 95 1574 0.0 T 21-04-2016 IPR028971 NAD-glutamate dehydrogenase GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 RAF_RS05975 a0a992a7b5d2b329d9b4af41ccb88aac 1583 PIRSF PIRSF036761 1 1583 0.0 T 21-04-2016 IPR007780 NAD-glutamate dehydrogenase, bacteria GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 RAF_RS02300 97ec33029e135f94645d431cf5c80419 776 Gene3D G3DSA:1.10.460.10 136 188 1.1E-56 T 21-04-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 RAF_RS02300 97ec33029e135f94645d431cf5c80419 776 Gene3D G3DSA:1.10.460.10 459 570 1.1E-56 T 21-04-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 RAF_RS02300 97ec33029e135f94645d431cf5c80419 776 SMART SM00437 249 519 2.5E-132 T 21-04-2016 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 RAF_RS02300 97ec33029e135f94645d431cf5c80419 776 PANTHER PTHR11390 1 679 0.0 T 21-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 RAF_RS02300 97ec33029e135f94645d431cf5c80419 776 Gene3D G3DSA:3.30.65.10 600 634 2.5E-9 T 21-04-2016 RAF_RS02300 97ec33029e135f94645d431cf5c80419 776 SMART SM00493 1 101 4.9E-32 T 21-04-2016 IPR006171 Toprim domain RAF_RS02300 97ec33029e135f94645d431cf5c80419 776 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 286 308 - T 21-04-2016 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 RAF_RS02300 97ec33029e135f94645d431cf5c80419 776 Hamap MF_00952 DNA topoisomerase 1 [topA]. 1 683 56.251 T 21-04-2016 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 RAF_RS02300 97ec33029e135f94645d431cf5c80419 776 Pfam PF01131 DNA topoisomerase 131 556 1.4E-130 T 21-04-2016 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RAF_RS02300 97ec33029e135f94645d431cf5c80419 776 SMART SM00436 107 195 2.6E-52 T 21-04-2016 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 RAF_RS02300 97ec33029e135f94645d431cf5c80419 776 Pfam PF01751 Toprim domain 3 116 1.7E-27 T 21-04-2016 IPR006171 Toprim domain RAF_RS02300 97ec33029e135f94645d431cf5c80419 776 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 599 633 1.3E-13 T 21-04-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 RAF_RS02300 97ec33029e135f94645d431cf5c80419 776 Pfam PF13368 Topoisomerase C-terminal repeat 719 770 2.5E-9 T 21-04-2016 IPR025589 Topoisomerase C-terminal repeat RAF_RS02300 97ec33029e135f94645d431cf5c80419 776 Pfam PF13368 Topoisomerase C-terminal repeat 660 714 4.7E-9 T 21-04-2016 IPR025589 Topoisomerase C-terminal repeat RAF_RS02300 97ec33029e135f94645d431cf5c80419 776 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 75 88 6.6E-34 T 21-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 RAF_RS02300 97ec33029e135f94645d431cf5c80419 776 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 377 393 6.6E-34 T 21-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 RAF_RS02300 97ec33029e135f94645d431cf5c80419 776 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 482 496 6.6E-34 T 21-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 RAF_RS02300 97ec33029e135f94645d431cf5c80419 776 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 299 308 6.6E-34 T 21-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 RAF_RS02300 97ec33029e135f94645d431cf5c80419 776 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 165 183 6.6E-34 T 21-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 RAF_RS02300 97ec33029e135f94645d431cf5c80419 776 SUPERFAMILY SSF57783 598 634 7.31E-8 T 21-04-2016 RAF_RS02300 97ec33029e135f94645d431cf5c80419 776 PANTHER PTHR11390:SF27 1 679 0.0 T 21-04-2016 RAF_RS02300 97ec33029e135f94645d431cf5c80419 776 SUPERFAMILY SSF56712 1 570 1.23E-190 T 21-04-2016 IPR023405 DNA topoisomerase, type IA, core domain RAF_RS02300 97ec33029e135f94645d431cf5c80419 776 SUPERFAMILY SSF56712 598 606 1.23E-190 T 21-04-2016 IPR023405 DNA topoisomerase, type IA, core domain RAF_RS02300 97ec33029e135f94645d431cf5c80419 776 Gene3D G3DSA:2.70.20.10 189 319 1.5E-32 T 21-04-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 RAF_RS02300 97ec33029e135f94645d431cf5c80419 776 Gene3D G3DSA:2.70.20.10 325 458 3.2E-32 T 21-04-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 RAF_RS02300 97ec33029e135f94645d431cf5c80419 776 Gene3D G3DSA:3.40.50.140 1 135 2.4E-45 T 21-04-2016 IPR006171 Toprim domain RAF_RS02300 97ec33029e135f94645d431cf5c80419 776 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 3 633 4.9E-277 T 21-04-2016 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 RAF_RS02540 15a4d1112508be6264cab0654bfe94ab 504 Gene3D G3DSA:3.60.110.10 213 450 7.2E-25 T 21-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RAF_RS02540 15a4d1112508be6264cab0654bfe94ab 504 PANTHER PTHR23088:SF29 200 487 6.6E-60 T 21-04-2016 RAF_RS02540 15a4d1112508be6264cab0654bfe94ab 504 PANTHER PTHR23088 200 487 6.6E-60 T 21-04-2016 RAF_RS02540 15a4d1112508be6264cab0654bfe94ab 504 Pfam PF00795 Carbon-nitrogen hydrolase 216 451 2.5E-37 T 21-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RAF_RS02540 15a4d1112508be6264cab0654bfe94ab 504 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 54 442 6.4E-122 T 21-04-2016 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 UniPathway: UPA00666 RAF_RS02540 15a4d1112508be6264cab0654bfe94ab 504 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 1 480 21.657 T 21-04-2016 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 UniPathway: UPA00666 RAF_RS02540 15a4d1112508be6264cab0654bfe94ab 504 SUPERFAMILY SSF56317 212 449 8.76E-38 T 21-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 RAF_RS03640 2136443334f068e5050a920556e1e6e9 219 Hamap MF_00238 Cytidylate kinase [cmk]. 15 218 27.877 T 21-04-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 RAF_RS03640 2136443334f068e5050a920556e1e6e9 219 Gene3D G3DSA:3.40.50.300 14 215 3.3E-65 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS03640 2136443334f068e5050a920556e1e6e9 219 Pfam PF02224 Cytidylate kinase 17 215 2.2E-68 T 21-04-2016 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 RAF_RS03640 2136443334f068e5050a920556e1e6e9 219 TIGRFAM TIGR00017 cmk: cytidylate kinase 14 212 9.8E-51 T 21-04-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 RAF_RS03640 2136443334f068e5050a920556e1e6e9 219 SUPERFAMILY SSF52540 15 217 4.96E-36 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS03640 2136443334f068e5050a920556e1e6e9 219 PANTHER PTHR21299 17 217 2.1E-32 T 21-04-2016 RAF_RS03640 2136443334f068e5050a920556e1e6e9 219 PANTHER PTHR21299:SF2 17 217 2.1E-32 T 21-04-2016 RAF_RS00660 fa361544db7ecb4c4464e741b8af7bf0 259 PANTHER PTHR30188 1 259 9.4E-96 T 21-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 RAF_RS00660 fa361544db7ecb4c4464e741b8af7bf0 259 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 6 258 1.1E-75 T 21-04-2016 IPR003453 ABC transport permease subunit MlaE, Proteobacteria RAF_RS00660 fa361544db7ecb4c4464e741b8af7bf0 259 PANTHER PTHR30188:SF4 1 259 9.4E-96 T 21-04-2016 RAF_RS00660 fa361544db7ecb4c4464e741b8af7bf0 259 Pfam PF02405 Permease MlaE 44 254 8.7E-79 T 21-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 RAF_RS04960 7884731c2540eda6b8deb8ba51c6e96b 222 PANTHER PTHR30050 85 215 3.7E-15 T 21-04-2016 RAF_RS04960 7884731c2540eda6b8deb8ba51c6e96b 222 Gene3D G3DSA:1.10.8.60 151 215 1.2E-14 T 21-04-2016 RAF_RS04960 7884731c2540eda6b8deb8ba51c6e96b 222 PANTHER PTHR30050:SF5 85 215 3.7E-15 T 21-04-2016 RAF_RS04960 7884731c2540eda6b8deb8ba51c6e96b 222 Gene3D G3DSA:3.40.50.300 2 145 9.6E-14 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04960 7884731c2540eda6b8deb8ba51c6e96b 222 SUPERFAMILY SSF52540 30 217 4.2E-11 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02395 41018c89d8ffbebb21b0c2fe47f849d7 390 Gene3D G3DSA:3.40.50.2000 160 361 1.9E-24 T 21-04-2016 RAF_RS02395 41018c89d8ffbebb21b0c2fe47f849d7 390 Pfam PF13439 Glycosyltransferase Family 4 25 179 3.9E-28 T 21-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RAF_RS02395 41018c89d8ffbebb21b0c2fe47f849d7 390 SUPERFAMILY SSF53756 14 387 4.49E-79 T 21-04-2016 RAF_RS02395 41018c89d8ffbebb21b0c2fe47f849d7 390 PANTHER PTHR12526 9 386 5.5E-60 T 21-04-2016 RAF_RS02395 41018c89d8ffbebb21b0c2fe47f849d7 390 Pfam PF00534 Glycosyl transferases group 1 197 361 2.2E-31 T 21-04-2016 IPR001296 Glycosyl transferase, family 1 RAF_RS00575 35c2251cc43ab22f6f6071d0d4955765 100 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 1.1E-13 T 21-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RAF_RS00575 35c2251cc43ab22f6f6071d0d4955765 100 PRINTS PR01651 Protein-export SecG membrane protein signature 53 75 1.1E-13 T 21-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RAF_RS00575 35c2251cc43ab22f6f6071d0d4955765 100 PRINTS PR01651 Protein-export SecG membrane protein signature 37 53 1.1E-13 T 21-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RAF_RS00575 35c2251cc43ab22f6f6071d0d4955765 100 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 4 73 3.6E-19 T 21-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RAF_RS00575 35c2251cc43ab22f6f6071d0d4955765 100 Pfam PF03840 Preprotein translocase SecG subunit 4 71 2.4E-16 T 21-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RAF_RS03990 f689c4a39e277b598a3a017a4f7e51b1 41 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 41 16.444 T 21-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS03990 f689c4a39e277b598a3a017a4f7e51b1 41 SUPERFAMILY SSF57840 1 41 1.28E-11 T 21-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS03990 f689c4a39e277b598a3a017a4f7e51b1 41 PANTHER PTHR18804 1 41 6.3E-14 T 21-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS03990 f689c4a39e277b598a3a017a4f7e51b1 41 ProSitePatterns PS00828 Ribosomal protein L36 signature. 14 40 - T 21-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS03990 f689c4a39e277b598a3a017a4f7e51b1 41 PANTHER PTHR18804:SF11 1 41 6.3E-14 T 21-04-2016 RAF_RS03990 f689c4a39e277b598a3a017a4f7e51b1 41 Pfam PF00444 Ribosomal protein L36 1 41 1.6E-14 T 21-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS06765 aa1d9af1d278b272f07fb123d6368069 634 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 381 618 2.2E-115 T 21-04-2016 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 RAF_RS06765 aa1d9af1d278b272f07fb123d6368069 634 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 5 619 42.314 T 21-04-2016 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 RAF_RS06765 aa1d9af1d278b272f07fb123d6368069 634 SUPERFAMILY SSF88946 121 452 2.04E-85 T 21-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAF_RS06765 aa1d9af1d278b272f07fb123d6368069 634 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 409 422 - T 21-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAF_RS06765 aa1d9af1d278b272f07fb123d6368069 634 Gene3D G3DSA:1.10.10.10 458 509 5.2E-24 T 21-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RAF_RS06765 aa1d9af1d278b272f07fb123d6368069 634 Pfam PF04546 Sigma-70, non-essential region 146 354 2.8E-26 T 21-04-2016 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAF_RS06765 aa1d9af1d278b272f07fb123d6368069 634 PRINTS PR00046 Major sigma-70 factor signature 433 441 1.2E-30 T 21-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAF_RS06765 aa1d9af1d278b272f07fb123d6368069 634 PRINTS PR00046 Major sigma-70 factor signature 409 422 1.2E-30 T 21-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAF_RS06765 aa1d9af1d278b272f07fb123d6368069 634 PRINTS PR00046 Major sigma-70 factor signature 594 605 1.2E-30 T 21-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAF_RS06765 aa1d9af1d278b272f07fb123d6368069 634 PRINTS PR00046 Major sigma-70 factor signature 579 594 1.2E-30 T 21-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAF_RS06765 aa1d9af1d278b272f07fb123d6368069 634 PRINTS PR00046 Major sigma-70 factor signature 558 570 1.2E-30 T 21-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAF_RS06765 aa1d9af1d278b272f07fb123d6368069 634 Gene3D G3DSA:1.10.10.10 548 617 2.0E-30 T 21-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RAF_RS06765 aa1d9af1d278b272f07fb123d6368069 634 Pfam PF03979 Sigma-70 factor, region 1.1 10 89 7.7E-11 T 21-04-2016 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 RAF_RS06765 aa1d9af1d278b272f07fb123d6368069 634 SUPERFAMILY SSF88659 458 532 9.59E-19 T 21-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAF_RS06765 aa1d9af1d278b272f07fb123d6368069 634 PANTHER PTHR30603:SF0 339 625 6.8E-197 T 21-04-2016 RAF_RS06765 aa1d9af1d278b272f07fb123d6368069 634 PANTHER PTHR30603:SF0 11 158 6.8E-197 T 21-04-2016 RAF_RS06765 aa1d9af1d278b272f07fb123d6368069 634 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 579 605 - T 21-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAF_RS06765 aa1d9af1d278b272f07fb123d6368069 634 PANTHER PTHR30603 339 625 6.8E-197 T 21-04-2016 RAF_RS06765 aa1d9af1d278b272f07fb123d6368069 634 PANTHER PTHR30603 11 158 6.8E-197 T 21-04-2016 RAF_RS06765 aa1d9af1d278b272f07fb123d6368069 634 SUPERFAMILY SSF88659 519 615 6.73E-25 T 21-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAF_RS06765 aa1d9af1d278b272f07fb123d6368069 634 Gene3D G3DSA:1.10.601.10 118 454 1.7E-104 T 21-04-2016 RAF_RS06765 aa1d9af1d278b272f07fb123d6368069 634 Pfam PF04539 Sigma-70 region 3 464 540 4.9E-25 T 21-04-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAF_RS06765 aa1d9af1d278b272f07fb123d6368069 634 Pfam PF00140 Sigma-70 factor, region 1.2 104 134 1.2E-12 T 21-04-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAF_RS06765 aa1d9af1d278b272f07fb123d6368069 634 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 381 608 1.2E-39 T 21-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAF_RS06765 aa1d9af1d278b272f07fb123d6368069 634 Pfam PF04542 Sigma-70 region 2 385 454 1.9E-21 T 21-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAF_RS06765 aa1d9af1d278b272f07fb123d6368069 634 Pfam PF04545 Sigma-70, region 4 554 607 1.9E-18 T 21-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RAF_RS00525 132ab44eb5d090c0bde5b841c710df17 152 PANTHER PTHR36918:SF1 1 143 3.9E-35 T 21-04-2016 RAF_RS00525 132ab44eb5d090c0bde5b841c710df17 152 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 9 149 1.4E-64 T 21-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RAF_RS00525 132ab44eb5d090c0bde5b841c710df17 152 Hamap MF_00821 Protein-export protein SecB [secB]. 1 151 28.837 T 21-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RAF_RS00525 132ab44eb5d090c0bde5b841c710df17 152 PANTHER PTHR36918 1 143 3.9E-35 T 21-04-2016 RAF_RS00525 132ab44eb5d090c0bde5b841c710df17 152 SUPERFAMILY SSF54611 14 147 4.8E-43 T 21-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RAF_RS00525 132ab44eb5d090c0bde5b841c710df17 152 Pfam PF02556 Preprotein translocase subunit SecB 10 149 2.7E-47 T 21-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RAF_RS00525 132ab44eb5d090c0bde5b841c710df17 152 Gene3D G3DSA:3.10.420.10 7 151 6.3E-51 T 21-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RAF_RS00525 132ab44eb5d090c0bde5b841c710df17 152 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 129 147 1.9E-28 T 21-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RAF_RS00525 132ab44eb5d090c0bde5b841c710df17 152 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 79 99 1.9E-28 T 21-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RAF_RS00525 132ab44eb5d090c0bde5b841c710df17 152 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 17 34 1.9E-28 T 21-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RAF_RS00525 132ab44eb5d090c0bde5b841c710df17 152 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 103 125 1.9E-28 T 21-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RAF_RS00460 7a26c9d5ae09b75e6dd0b8150a4018d8 286 PANTHER PTHR33375 7 285 1.9E-76 T 21-04-2016 RAF_RS00460 7a26c9d5ae09b75e6dd0b8150a4018d8 286 SUPERFAMILY SSF110849 28 116 5.23E-26 T 21-04-2016 IPR003115 ParB/Sulfiredoxin RAF_RS00460 7a26c9d5ae09b75e6dd0b8150a4018d8 286 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 27 188 1.4E-48 T 21-04-2016 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 RAF_RS00460 7a26c9d5ae09b75e6dd0b8150a4018d8 286 SMART SM00470 28 114 3.0E-35 T 21-04-2016 IPR003115 ParB/Sulfiredoxin RAF_RS00460 7a26c9d5ae09b75e6dd0b8150a4018d8 286 SUPERFAMILY SSF109709 106 213 4.45E-32 T 21-04-2016 RAF_RS00460 7a26c9d5ae09b75e6dd0b8150a4018d8 286 Pfam PF02195 ParB-like nuclease domain 30 114 1.8E-26 T 21-04-2016 IPR003115 ParB/Sulfiredoxin RAF_RS00460 7a26c9d5ae09b75e6dd0b8150a4018d8 286 Gene3D G3DSA:3.90.1530.10 26 120 3.3E-34 T 21-04-2016 RAF_RS02775 a8797e3a46e414259840e585e25538c5 180 PANTHER PTHR36917:SF1 1 170 6.6E-34 T 21-04-2016 RAF_RS02775 a8797e3a46e414259840e585e25538c5 180 PANTHER PTHR36917 1 170 6.6E-34 T 21-04-2016 RAF_RS02775 a8797e3a46e414259840e585e25538c5 180 TIGRFAM TIGR00997 ispZ: intracellular septation protein A 2 178 2.8E-64 T 21-04-2016 IPR006008 Intracellular septation protein A GO:0016021 RAF_RS02775 a8797e3a46e414259840e585e25538c5 180 Pfam PF04279 Intracellular septation protein A 2 173 5.4E-47 T 21-04-2016 IPR006008 Intracellular septation protein A GO:0016021 RAF_RS02775 a8797e3a46e414259840e585e25538c5 180 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 2 177 15.819 T 21-04-2016 IPR006008 Intracellular septation protein A GO:0016021 RAF_RS00865 dc04104f05e4cbdcd1f721144402f14f 247 Pfam PF00581 Rhodanese-like domain 116 211 5.8E-9 T 21-04-2016 IPR001763 Rhodanese-like domain RAF_RS00865 dc04104f05e4cbdcd1f721144402f14f 247 PANTHER PTHR22778:SF21 2 234 3.8E-70 T 21-04-2016 RAF_RS00865 dc04104f05e4cbdcd1f721144402f14f 247 Hamap MF_00469 UPF0176 protein YceA [yceA]. 3 243 38.505 T 21-04-2016 IPR020936 Uncharacterised protein family UPF0176 RAF_RS00865 dc04104f05e4cbdcd1f721144402f14f 247 PANTHER PTHR22778 2 234 3.8E-70 T 21-04-2016 RAF_RS00865 dc04104f05e4cbdcd1f721144402f14f 247 Gene3D G3DSA:3.40.250.10 98 227 5.0E-39 T 21-04-2016 IPR001763 Rhodanese-like domain RAF_RS00865 dc04104f05e4cbdcd1f721144402f14f 247 SMART SM00450 114 215 1.8E-19 T 21-04-2016 IPR001763 Rhodanese-like domain RAF_RS00865 dc04104f05e4cbdcd1f721144402f14f 247 SUPERFAMILY SSF52821 104 239 6.17E-30 T 21-04-2016 IPR001763 Rhodanese-like domain RAF_RS06640 723c3c166dcd63cc919f57623b20644f 414 Pfam PF00155 Aminotransferase class I and II 43 382 1.5E-67 T 21-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RAF_RS06640 723c3c166dcd63cc919f57623b20644f 414 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 241 250 - T 21-04-2016 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 RAF_RS06640 723c3c166dcd63cc919f57623b20644f 414 Gene3D G3DSA:3.90.1150.10 280 394 9.7E-24 T 21-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RAF_RS06640 723c3c166dcd63cc919f57623b20644f 414 PANTHER PTHR13693:SF57 4 411 4.2E-211 T 21-04-2016 RAF_RS06640 723c3c166dcd63cc919f57623b20644f 414 Gene3D G3DSA:3.40.640.10 58 279 7.8E-81 T 21-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RAF_RS06640 723c3c166dcd63cc919f57623b20644f 414 TIGRFAM TIGR01821 5aminolev_synth: 5-aminolevulinic acid synthase 3 398 1.1E-196 T 21-04-2016 IPR010961 Tetrapyrrole biosynthesis, 5-aminolevulinic acid synthase GO:0003870|GO:0030170|GO:0033014 KEGG: 00260+2.3.1.37|KEGG: 00860+2.3.1.37|MetaCyc: PWY-5189|MetaCyc: PWY-7536|Reactome: REACT_9431|UniPathway: UPA00251 RAF_RS06640 723c3c166dcd63cc919f57623b20644f 414 SUPERFAMILY SSF53383 3 395 7.48E-98 T 21-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RAF_RS06640 723c3c166dcd63cc919f57623b20644f 414 PANTHER PTHR13693 4 411 4.2E-211 T 21-04-2016 RAF_RS01765 3f432b9d99a3fceee7f84454b5f2b4ca 288 Gene3D G3DSA:3.30.1700.10 129 280 1.7E-50 T 21-04-2016 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 RAF_RS01765 3f432b9d99a3fceee7f84454b5f2b4ca 288 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 3 274 8.2E-98 T 21-04-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 RAF_RS01765 3f432b9d99a3fceee7f84454b5f2b4ca 288 SUPERFAMILY SSF54211 134 276 9.86E-43 T 21-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RAF_RS01765 3f432b9d99a3fceee7f84454b5f2b4ca 288 PANTHER PTHR33694:SF1 1 287 3.1E-98 T 21-04-2016 RAF_RS01765 3f432b9d99a3fceee7f84454b5f2b4ca 288 Gene3D G3DSA:3.30.230.20 2 126 5.3E-44 T 21-04-2016 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 RAF_RS01765 3f432b9d99a3fceee7f84454b5f2b4ca 288 Hamap MF_00388 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [lpxC]. 1 279 44.098 T 21-04-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 RAF_RS01765 3f432b9d99a3fceee7f84454b5f2b4ca 288 PANTHER PTHR33694 1 287 3.1E-98 T 21-04-2016 RAF_RS01765 3f432b9d99a3fceee7f84454b5f2b4ca 288 SUPERFAMILY SSF54211 1 126 9.1E-40 T 21-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RAF_RS01765 3f432b9d99a3fceee7f84454b5f2b4ca 288 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 1 285 1.1E-92 T 21-04-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 RAF_RS06715 4c18754935bf369b0a7480eb72f586e8 288 Gene3D G3DSA:3.30.930.10 2 210 6.1E-95 T 21-04-2016 RAF_RS06715 4c18754935bf369b0a7480eb72f586e8 288 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 4 288 56.353 T 21-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RAF_RS06715 4c18754935bf369b0a7480eb72f586e8 288 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 5 285 2.0E-132 T 21-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RAF_RS06715 4c18754935bf369b0a7480eb72f586e8 288 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 6 286 3.9E-137 T 21-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RAF_RS06715 4c18754935bf369b0a7480eb72f586e8 288 Gene3D G3DSA:1.20.58.180 213 287 3.1E-30 T 21-04-2016 RAF_RS06715 4c18754935bf369b0a7480eb72f586e8 288 PANTHER PTHR30075 4 279 4.0E-182 T 21-04-2016 RAF_RS06715 4c18754935bf369b0a7480eb72f586e8 288 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 79 99 6.4E-61 T 21-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RAF_RS06715 4c18754935bf369b0a7480eb72f586e8 288 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 58 73 6.4E-61 T 21-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RAF_RS06715 4c18754935bf369b0a7480eb72f586e8 288 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 249 265 6.4E-61 T 21-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RAF_RS06715 4c18754935bf369b0a7480eb72f586e8 288 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 159 174 6.4E-61 T 21-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RAF_RS06715 4c18754935bf369b0a7480eb72f586e8 288 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 110 134 6.4E-61 T 21-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RAF_RS06715 4c18754935bf369b0a7480eb72f586e8 288 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 136 156 6.4E-61 T 21-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RAF_RS06715 4c18754935bf369b0a7480eb72f586e8 288 SUPERFAMILY SSF55681 5 286 2.98E-125 T 21-04-2016 RAF_RS04760 0b601f3d0331f9963c832801629177fb 44 PANTHER PTHR14503 1 44 5.1E-20 T 21-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS04760 0b601f3d0331f9963c832801629177fb 44 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 39 1.0E-14 T 21-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS04760 0b601f3d0331f9963c832801629177fb 44 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 15.78 T 21-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS04760 0b601f3d0331f9963c832801629177fb 44 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 1.3E-24 T 21-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS04760 0b601f3d0331f9963c832801629177fb 44 Pfam PF00468 Ribosomal protein L34 1 44 3.0E-23 T 21-04-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS04760 0b601f3d0331f9963c832801629177fb 44 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 21-04-2016 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS01355 384d8beda39addb16dfdffec9261ab60 112 PANTHER PTHR23426:SF25 4 110 2.6E-58 T 21-04-2016 RAF_RS01355 384d8beda39addb16dfdffec9261ab60 112 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 12 93 1.1E-13 T 21-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RAF_RS01355 384d8beda39addb16dfdffec9261ab60 112 Gene3D G3DSA:3.10.20.30 3 104 2.0E-43 T 21-04-2016 IPR012675 Beta-grasp domain RAF_RS01355 384d8beda39addb16dfdffec9261ab60 112 PANTHER PTHR23426 4 110 2.6E-58 T 21-04-2016 RAF_RS01355 384d8beda39addb16dfdffec9261ab60 112 SUPERFAMILY SSF54292 6 105 3.79E-32 T 21-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RAF_RS01355 384d8beda39addb16dfdffec9261ab60 112 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 42 52 - T 21-04-2016 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 RAF_RS01355 384d8beda39addb16dfdffec9261ab60 112 PRINTS PR00355 Adrenodoxin signature 61 75 9.7E-11 T 21-04-2016 IPR001055 Adrenodoxin GO:0009055|GO:0051537 RAF_RS01355 384d8beda39addb16dfdffec9261ab60 112 PRINTS PR00355 Adrenodoxin signature 42 52 9.7E-11 T 21-04-2016 IPR001055 Adrenodoxin GO:0009055|GO:0051537 RAF_RS01355 384d8beda39addb16dfdffec9261ab60 112 PRINTS PR00355 Adrenodoxin signature 84 92 9.7E-11 T 21-04-2016 IPR001055 Adrenodoxin GO:0009055|GO:0051537 RAF_RS05680 a20259a4660c080138437d8fde052694 314 SUPERFAMILY SSF52151 3 125 2.88E-65 T 21-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RAF_RS05680 a20259a4660c080138437d8fde052694 314 SUPERFAMILY SSF52151 192 310 2.88E-65 T 21-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RAF_RS05680 a20259a4660c080138437d8fde052694 314 SUPERFAMILY SSF55048 131 199 1.44E-13 T 21-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 RAF_RS05680 a20259a4660c080138437d8fde052694 314 Pfam PF00698 Acyl transferase domain 5 288 4.8E-31 T 21-04-2016 IPR014043 Acyl transferase RAF_RS05680 a20259a4660c080138437d8fde052694 314 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 1 291 2.8E-82 T 21-04-2016 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 RAF_RS05680 a20259a4660c080138437d8fde052694 314 PIRSF PIRSF000446 1 313 1.0E-85 T 21-04-2016 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388|UniPathway: UPA00094 RAF_RS05680 a20259a4660c080138437d8fde052694 314 PANTHER PTHR10982 1 291 8.7E-110 T 21-04-2016 RAF_RS05680 a20259a4660c080138437d8fde052694 314 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 6 302 4.4E-16 T 21-04-2016 IPR020801 Polyketide synthase, acyl transferase domain RAF_RS05680 a20259a4660c080138437d8fde052694 314 Gene3D G3DSA:3.40.366.10 2 125 8.3E-59 T 21-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 RAF_RS05680 a20259a4660c080138437d8fde052694 314 Gene3D G3DSA:3.40.366.10 199 307 8.3E-59 T 21-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 RAF_RS05680 a20259a4660c080138437d8fde052694 314 Gene3D G3DSA:3.30.70.250 128 198 1.6E-20 T 21-04-2016 RAF_RS05305 a500d13c8339835d4ab9b983706b44ec 248 Pfam PF01209 ubiE/COQ5 methyltransferase family 16 246 2.8E-83 T 21-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RAF_RS05305 a500d13c8339835d4ab9b983706b44ec 248 PANTHER PTHR10108 1 244 2.0E-111 T 21-04-2016 RAF_RS05305 a500d13c8339835d4ab9b983706b44ec 248 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 31 46 - T 21-04-2016 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RAF_RS05305 a500d13c8339835d4ab9b983706b44ec 248 PANTHER PTHR10108:SF24 1 244 2.0E-111 T 21-04-2016 RAF_RS05305 a500d13c8339835d4ab9b983706b44ec 248 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 11 247 37.439 T 21-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RAF_RS05305 a500d13c8339835d4ab9b983706b44ec 248 SUPERFAMILY SSF53335 17 223 1.39E-42 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS05305 a500d13c8339835d4ab9b983706b44ec 248 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 155 169 - T 21-04-2016 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RAF_RS05305 a500d13c8339835d4ab9b983706b44ec 248 Gene3D G3DSA:3.40.50.150 20 244 1.1E-52 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS05305 a500d13c8339835d4ab9b983706b44ec 248 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 20 246 1.6E-87 T 21-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 RAF_RS00655 4014092dae1eb36559c64841d8399f6d 355 Gene3D G3DSA:3.20.20.10 10 212 3.7E-67 T 21-04-2016 IPR029066 PLP-binding barrel RAF_RS00655 4014092dae1eb36559c64841d8399f6d 355 SMART SM01005 228 354 9.7E-54 T 21-04-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RAF_RS00655 4014092dae1eb36559c64841d8399f6d 355 SUPERFAMILY SSF50621 226 354 1.64E-40 T 21-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 RAF_RS00655 4014092dae1eb36559c64841d8399f6d 355 Pfam PF01168 Alanine racemase, N-terminal domain 8 223 5.7E-49 T 21-04-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RAF_RS00655 4014092dae1eb36559c64841d8399f6d 355 Pfam PF00842 Alanine racemase, C-terminal domain 229 353 1.2E-34 T 21-04-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RAF_RS00655 4014092dae1eb36559c64841d8399f6d 355 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 31 41 - T 21-04-2016 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RAF_RS00655 4014092dae1eb36559c64841d8399f6d 355 TIGRFAM TIGR00492 alr: alanine racemase 5 354 3.2E-78 T 21-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RAF_RS00655 4014092dae1eb36559c64841d8399f6d 355 Hamap MF_01201 Alanine racemase. 1 354 29.538 T 21-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RAF_RS00655 4014092dae1eb36559c64841d8399f6d 355 PANTHER PTHR30511 1 354 1.2E-99 T 21-04-2016 RAF_RS00655 4014092dae1eb36559c64841d8399f6d 355 PRINTS PR00992 Alanine racemase signature 261 276 1.2E-29 T 21-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RAF_RS00655 4014092dae1eb36559c64841d8399f6d 355 PRINTS PR00992 Alanine racemase signature 336 349 1.2E-29 T 21-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RAF_RS00655 4014092dae1eb36559c64841d8399f6d 355 PRINTS PR00992 Alanine racemase signature 124 136 1.2E-29 T 21-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RAF_RS00655 4014092dae1eb36559c64841d8399f6d 355 PRINTS PR00992 Alanine racemase signature 26 42 1.2E-29 T 21-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RAF_RS00655 4014092dae1eb36559c64841d8399f6d 355 PRINTS PR00992 Alanine racemase signature 158 169 1.2E-29 T 21-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RAF_RS00655 4014092dae1eb36559c64841d8399f6d 355 PRINTS PR00992 Alanine racemase signature 244 259 1.2E-29 T 21-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RAF_RS00655 4014092dae1eb36559c64841d8399f6d 355 PRINTS PR00992 Alanine racemase signature 282 299 1.2E-29 T 21-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 RAF_RS00655 4014092dae1eb36559c64841d8399f6d 355 Gene3D G3DSA:2.40.37.10 213 354 2.4E-53 T 21-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 RAF_RS00655 4014092dae1eb36559c64841d8399f6d 355 PANTHER PTHR30511:SF0 1 354 1.2E-99 T 21-04-2016 RAF_RS00655 4014092dae1eb36559c64841d8399f6d 355 SUPERFAMILY SSF51419 8 226 2.62E-54 T 21-04-2016 IPR029066 PLP-binding barrel RAF_RS04950 a79698563305300a3d80541284d9d85a 178 Pfam PF01025 GrpE 17 176 2.1E-51 T 21-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RAF_RS04950 a79698563305300a3d80541284d9d85a 178 SUPERFAMILY SSF51064 124 177 6.02E-15 T 21-04-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 RAF_RS04950 a79698563305300a3d80541284d9d85a 178 ProSitePatterns PS01071 grpE protein signature. 131 174 - T 21-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RAF_RS04950 a79698563305300a3d80541284d9d85a 178 Hamap MF_01151 Protein GrpE [grpE]. 3 176 18.877 T 21-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RAF_RS04950 a79698563305300a3d80541284d9d85a 178 Gene3D G3DSA:3.90.20.20 18 118 2.5E-29 T 21-04-2016 IPR013805 GrpE nucleotide exchange factor, coiled-coil RAF_RS04950 a79698563305300a3d80541284d9d85a 178 PRINTS PR00773 GrpE protein signature 128 143 8.4E-23 T 21-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RAF_RS04950 a79698563305300a3d80541284d9d85a 178 PRINTS PR00773 GrpE protein signature 43 59 8.4E-23 T 21-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RAF_RS04950 a79698563305300a3d80541284d9d85a 178 PRINTS PR00773 GrpE protein signature 155 174 8.4E-23 T 21-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RAF_RS04950 a79698563305300a3d80541284d9d85a 178 PRINTS PR00773 GrpE protein signature 71 86 8.4E-23 T 21-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RAF_RS04950 a79698563305300a3d80541284d9d85a 178 Gene3D G3DSA:2.30.22.10 120 178 4.2E-20 T 21-04-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 RAF_RS04950 a79698563305300a3d80541284d9d85a 178 PANTHER PTHR21237 3 178 1.2E-59 T 21-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 RAF_RS04950 a79698563305300a3d80541284d9d85a 178 SUPERFAMILY SSF58014 21 118 3.01E-24 T 21-04-2016 RAF_RS02330 970582a23c3094ae887950090b618c11 522 Gene3D G3DSA:3.40.720.10 223 475 1.5E-15 T 21-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 RAF_RS02330 970582a23c3094ae887950090b618c11 522 Pfam PF08019 Domain of unknown function (DUF1705) 61 169 6.8E-13 T 21-04-2016 IPR012549 Domain of unknown function DUF1705 GO:0016021 RAF_RS02330 970582a23c3094ae887950090b618c11 522 PANTHER PTHR30443 1 518 5.5E-79 T 21-04-2016 RAF_RS02330 970582a23c3094ae887950090b618c11 522 Pfam PF00884 Sulfatase 223 506 6.7E-45 T 21-04-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 RAF_RS02330 970582a23c3094ae887950090b618c11 522 SUPERFAMILY SSF53649 223 481 5.79E-26 T 21-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 RAF_RS01195 cb84881c90b000484e7fda82fa4ce24b 395 Gene3D G3DSA:4.10.320.10 112 155 1.1E-13 T 21-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RAF_RS01195 cb84881c90b000484e7fda82fa4ce24b 395 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 4 394 9.6E-167 T 21-04-2016 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|UniPathway: UPA00868 RAF_RS01195 cb84881c90b000484e7fda82fa4ce24b 395 Gene3D G3DSA:3.30.559.10 160 393 2.2E-90 T 21-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain RAF_RS01195 cb84881c90b000484e7fda82fa4ce24b 395 Gene3D G3DSA:2.40.50.100 1 95 1.4E-27 T 21-04-2016 RAF_RS01195 cb84881c90b000484e7fda82fa4ce24b 395 PANTHER PTHR23151 5 395 3.2E-205 T 21-04-2016 RAF_RS01195 cb84881c90b000484e7fda82fa4ce24b 395 Pfam PF02817 e3 binding domain 113 145 7.3E-12 T 21-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RAF_RS01195 cb84881c90b000484e7fda82fa4ce24b 395 Pfam PF00364 Biotin-requiring enzyme 4 76 2.2E-19 T 21-04-2016 IPR000089 Biotin/lipoyl attachment RAF_RS01195 cb84881c90b000484e7fda82fa4ce24b 395 SUPERFAMILY SSF51230 2 89 6.94E-25 T 21-04-2016 IPR011053 Single hybrid motif RAF_RS01195 cb84881c90b000484e7fda82fa4ce24b 395 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 165 393 1.8E-81 T 21-04-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 RAF_RS01195 cb84881c90b000484e7fda82fa4ce24b 395 SUPERFAMILY SSF52777 165 394 1.56E-86 T 21-04-2016 RAF_RS01195 cb84881c90b000484e7fda82fa4ce24b 395 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 21-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site RAF_RS01195 cb84881c90b000484e7fda82fa4ce24b 395 SUPERFAMILY SSF47005 111 149 4.84E-10 T 21-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 RAF_RS01195 cb84881c90b000484e7fda82fa4ce24b 395 PANTHER PTHR23151:SF47 5 395 3.2E-205 T 21-04-2016 RAF_RS05555 c059f8263d2d026e4c5ab4021c99a748 155 Gene3D G3DSA:1.20.120.20 36 147 7.0E-8 T 21-04-2016 RAF_RS05555 c059f8263d2d026e4c5ab4021c99a748 155 SUPERFAMILY SSF47162 35 148 2.88E-8 T 21-04-2016 RAF_RS05920 9587de9ef99cd914f7abe1edf72eb3e0 401 SUPERFAMILY SSF53633 4 246 2.09E-75 T 21-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RAF_RS05920 9587de9ef99cd914f7abe1edf72eb3e0 401 SUPERFAMILY SSF55021 325 400 2.42E-12 T 21-04-2016 RAF_RS05920 9587de9ef99cd914f7abe1edf72eb3e0 401 PIRSF PIRSF000726 63 401 2.0E-90 T 21-04-2016 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RAF_RS05920 9587de9ef99cd914f7abe1edf72eb3e0 401 PRINTS PR00474 Glutamate 5-kinase family signature 33 47 1.9E-5 T 21-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RAF_RS05920 9587de9ef99cd914f7abe1edf72eb3e0 401 PRINTS PR00474 Glutamate 5-kinase family signature 155 182 1.9E-5 T 21-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RAF_RS05920 9587de9ef99cd914f7abe1edf72eb3e0 401 PRINTS PR00474 Glutamate 5-kinase family signature 119 140 1.9E-5 T 21-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 RAF_RS05920 9587de9ef99cd914f7abe1edf72eb3e0 401 Pfam PF00696 Amino acid kinase family 3 232 1.4E-52 T 21-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RAF_RS05920 9587de9ef99cd914f7abe1edf72eb3e0 401 PANTHER PTHR21499:SF27 1 401 6.8E-107 T 21-04-2016 RAF_RS05920 9587de9ef99cd914f7abe1edf72eb3e0 401 Gene3D G3DSA:3.40.1160.10 1 251 1.1E-71 T 21-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RAF_RS05920 9587de9ef99cd914f7abe1edf72eb3e0 401 PANTHER PTHR21499 1 401 6.8E-107 T 21-04-2016 RAF_RS05920 9587de9ef99cd914f7abe1edf72eb3e0 401 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 1 399 3.8E-133 T 21-04-2016 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RAF_RS05920 9587de9ef99cd914f7abe1edf72eb3e0 401 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 21-04-2016 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 RAF_RS05260 31203188ecfdf8551148f02d95f009c4 260 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 258 1.5E-66 T 21-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 RAF_RS05260 31203188ecfdf8551148f02d95f009c4 260 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 251 4.4E-25 T 21-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RAF_RS05260 31203188ecfdf8551148f02d95f009c4 260 SUPERFAMILY SSF56219 1 259 2.75E-72 T 21-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RAF_RS05260 31203188ecfdf8551148f02d95f009c4 260 PANTHER PTHR22748:SF7 1 259 2.1E-117 T 21-04-2016 RAF_RS05260 31203188ecfdf8551148f02d95f009c4 260 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 27 36 - T 21-04-2016 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 RAF_RS05260 31203188ecfdf8551148f02d95f009c4 260 PANTHER PTHR22748 1 259 2.1E-117 T 21-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 RAF_RS05260 31203188ecfdf8551148f02d95f009c4 260 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 258 1.2E-71 T 21-04-2016 RAF_RS05260 31203188ecfdf8551148f02d95f009c4 260 Gene3D G3DSA:3.60.10.10 1 259 6.1E-73 T 21-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RAF_RS06520 e2e1fe9e920ccb2ddfe033fa6b728e22 107 PIRSF PIRSF007061 1 107 2.4E-68 T 21-04-2016 IPR016507 Uncharacterised conserved protein UCP007061 RAF_RS06520 e2e1fe9e920ccb2ddfe033fa6b728e22 107 Pfam PF05258 Protein of unknown function (DUF721) 10 97 2.6E-10 T 21-04-2016 IPR007922 Protein of unknown function DUF721/UPF0232 RAF_RS01725 3ddea476dc85e89ac7c545f16f63e156 485 Gene3D G3DSA:3.40.50.720 15 101 1.3E-35 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS01725 3ddea476dc85e89ac7c545f16f63e156 485 SUPERFAMILY SSF51984 14 100 3.66E-29 T 21-04-2016 RAF_RS01725 3ddea476dc85e89ac7c545f16f63e156 485 PANTHER PTHR23135:SF5 8 464 1.3E-180 T 21-04-2016 RAF_RS01725 3ddea476dc85e89ac7c545f16f63e156 485 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 16 470 6.0E-181 T 21-04-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RAF_RS01725 3ddea476dc85e89ac7c545f16f63e156 485 SUPERFAMILY SSF53244 324 470 1.98E-43 T 21-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RAF_RS01725 3ddea476dc85e89ac7c545f16f63e156 485 Pfam PF02875 Mur ligase family, glutamate ligase domain 325 413 4.1E-20 T 21-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RAF_RS01725 3ddea476dc85e89ac7c545f16f63e156 485 SUPERFAMILY SSF53623 99 323 6.93E-61 T 21-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RAF_RS01725 3ddea476dc85e89ac7c545f16f63e156 485 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 13 476 41.847 T 21-04-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 RAF_RS01725 3ddea476dc85e89ac7c545f16f63e156 485 PANTHER PTHR23135 8 464 1.3E-180 T 21-04-2016 RAF_RS01725 3ddea476dc85e89ac7c545f16f63e156 485 Gene3D G3DSA:3.90.190.20 327 474 3.3E-49 T 21-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 RAF_RS01725 3ddea476dc85e89ac7c545f16f63e156 485 Pfam PF01225 Mur ligase family, catalytic domain 15 112 6.7E-28 T 21-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 RAF_RS01725 3ddea476dc85e89ac7c545f16f63e156 485 Pfam PF08245 Mur ligase middle domain 118 304 6.6E-28 T 21-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RAF_RS01725 3ddea476dc85e89ac7c545f16f63e156 485 Gene3D G3DSA:3.40.1190.10 102 326 7.8E-68 T 21-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 RAF_RS06550 190212672920d98326dddfe054ea76e7 301 Pfam PF01545 Cation efflux family 15 206 1.5E-36 T 21-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RAF_RS06550 190212672920d98326dddfe054ea76e7 301 PANTHER PTHR11562 6 296 1.3E-80 T 21-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RAF_RS06550 190212672920d98326dddfe054ea76e7 301 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 13 286 3.1E-60 T 21-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RAF_RS06550 190212672920d98326dddfe054ea76e7 301 Gene3D G3DSA:3.30.70.1350 207 288 6.3E-26 T 21-04-2016 IPR027470 Cation efflux protein, cytoplasmic domain RAF_RS06550 190212672920d98326dddfe054ea76e7 301 Pfam PF16916 Dimerisation domain of Zinc Transporter 210 286 9.4E-23 T 21-04-2016 IPR027470 Cation efflux protein, cytoplasmic domain RAF_RS06550 190212672920d98326dddfe054ea76e7 301 Gene3D G3DSA:1.20.1510.10 14 205 2.8E-38 T 21-04-2016 IPR027469 Cation efflux protein transmembrane domain RAF_RS06550 190212672920d98326dddfe054ea76e7 301 SUPERFAMILY SSF160240 210 288 5.89E-20 T 21-04-2016 RAF_RS06550 190212672920d98326dddfe054ea76e7 301 SUPERFAMILY SSF161111 7 207 7.45E-44 T 21-04-2016 RAF_RS06550 190212672920d98326dddfe054ea76e7 301 PANTHER PTHR11562:SF55 6 296 1.3E-80 T 21-04-2016 RAF_RS02555 8ad29e4484c2f4fc69033c95703c00f8 305 Gene3D G3DSA:3.40.50.2300 137 267 9.4E-27 T 21-04-2016 RAF_RS02555 8ad29e4484c2f4fc69033c95703c00f8 305 PANTHER PTHR35271 1 304 1.4E-16 T 21-04-2016 RAF_RS02555 8ad29e4484c2f4fc69033c95703c00f8 305 Pfam PF04392 ABC transporter substrate binding protein 29 298 7.4E-85 T 21-04-2016 IPR007487 ABC transporter, substrate-binding protein RAF_RS02555 8ad29e4484c2f4fc69033c95703c00f8 305 Gene3D G3DSA:3.40.50.2300 27 133 3.8E-16 T 21-04-2016 RAF_RS02555 8ad29e4484c2f4fc69033c95703c00f8 305 SUPERFAMILY SSF53822 28 127 7.74E-12 T 21-04-2016 IPR028082 Periplasmic binding protein-like I RAF_RS03485 48d2f9649becebe38831e1323939f7ad 161 SUPERFAMILY SSF52151 37 123 4.71E-17 T 21-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RAF_RS03485 48d2f9649becebe38831e1323939f7ad 161 Pfam PF01734 Patatin-like phospholipase 47 121 2.2E-12 T 21-04-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 RAF_RS03485 48d2f9649becebe38831e1323939f7ad 161 Gene3D G3DSA:3.40.1090.10 41 118 2.0E-7 T 21-04-2016 RAF_RS05500 a7ac4cbd60e01fc20ce6a8fec177bcea 633 SUPERFAMILY SSF54001 438 595 5.89E-16 T 21-04-2016 RAF_RS05500 a7ac4cbd60e01fc20ce6a8fec177bcea 633 Gene3D G3DSA:3.30.310.130 475 561 1.9E-7 T 21-04-2016 RAF_RS05500 a7ac4cbd60e01fc20ce6a8fec177bcea 633 Pfam PF02902 Ulp1 protease family, C-terminal catalytic domain 477 569 7.5E-6 T 21-04-2016 IPR003653 Ulp1 protease family, C-terminal catalytic domain GO:0006508|GO:0008234 RAF_RS05090 e3564633d92c5b49bc1a313dc05398bf 77 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 3 74 1.3E-33 T 21-04-2016 IPR019984 Ribosomal protein S17, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05090 e3564633d92c5b49bc1a313dc05398bf 77 Gene3D G3DSA:2.40.50.140 3 75 1.4E-30 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS05090 e3564633d92c5b49bc1a313dc05398bf 77 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 1 77 22.492 T 21-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05090 e3564633d92c5b49bc1a313dc05398bf 77 SUPERFAMILY SSF50249 3 75 9.42E-29 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS05090 e3564633d92c5b49bc1a313dc05398bf 77 PANTHER PTHR10744 1 74 9.8E-31 T 21-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05090 e3564633d92c5b49bc1a313dc05398bf 77 Pfam PF00366 Ribosomal protein S17 8 74 4.7E-29 T 21-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05090 e3564633d92c5b49bc1a313dc05398bf 77 ProSitePatterns PS00056 Ribosomal protein S17 signature. 54 66 - T 21-04-2016 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05090 e3564633d92c5b49bc1a313dc05398bf 77 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 1 74 3.0E-35 T 21-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05090 e3564633d92c5b49bc1a313dc05398bf 77 PRINTS PR00973 Ribosomal protein S17 family signature 54 64 1.0E-12 T 21-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05090 e3564633d92c5b49bc1a313dc05398bf 77 PRINTS PR00973 Ribosomal protein S17 family signature 22 45 1.0E-12 T 21-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05090 e3564633d92c5b49bc1a313dc05398bf 77 PRINTS PR00973 Ribosomal protein S17 family signature 64 71 1.0E-12 T 21-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05340 a99766ae67722e6c6739e8ff171504a7 306 PANTHER PTHR10060 115 299 1.9E-125 T 21-04-2016 IPR001130 TatD family GO:0016788 RAF_RS05340 a99766ae67722e6c6739e8ff171504a7 306 PANTHER PTHR10060 1 90 1.9E-125 T 21-04-2016 IPR001130 TatD family GO:0016788 RAF_RS05340 a99766ae67722e6c6739e8ff171504a7 306 Pfam PF01026 TatD related DNase 3 296 4.9E-79 T 21-04-2016 IPR001130 TatD family GO:0016788 RAF_RS05340 a99766ae67722e6c6739e8ff171504a7 306 PIRSF PIRSF005902 1 300 1.2E-93 T 21-04-2016 IPR001130 TatD family GO:0016788 RAF_RS05340 a99766ae67722e6c6739e8ff171504a7 306 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 166 176 - T 21-04-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 RAF_RS05340 a99766ae67722e6c6739e8ff171504a7 306 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 2 10 - T 21-04-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 RAF_RS05340 a99766ae67722e6c6739e8ff171504a7 306 Gene3D G3DSA:3.20.20.140 1 296 2.6E-84 T 21-04-2016 RAF_RS05340 a99766ae67722e6c6739e8ff171504a7 306 SUPERFAMILY SSF51556 117 297 3.86E-80 T 21-04-2016 IPR032466 Metal-dependent hydrolase RAF_RS05340 a99766ae67722e6c6739e8ff171504a7 306 SUPERFAMILY SSF51556 1 87 3.86E-80 T 21-04-2016 IPR032466 Metal-dependent hydrolase RAF_RS05340 a99766ae67722e6c6739e8ff171504a7 306 PANTHER PTHR10060:SF20 115 299 1.9E-125 T 21-04-2016 RAF_RS05340 a99766ae67722e6c6739e8ff171504a7 306 PANTHER PTHR10060:SF20 1 90 1.9E-125 T 21-04-2016 RAF_RS05340 a99766ae67722e6c6739e8ff171504a7 306 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 119 296 2.2E-78 T 21-04-2016 IPR015991 Uncharacterised deoxyribonuclease TatD-type GO:0004536 RAF_RS01705 c07a89d07db9d3b4a19106bf3b38f66f 350 Gene3D G3DSA:2.40.50.100 56 87 1.4E-11 T 21-04-2016 RAF_RS01705 c07a89d07db9d3b4a19106bf3b38f66f 350 Gene3D G3DSA:2.40.50.100 218 251 1.4E-11 T 21-04-2016 RAF_RS01705 c07a89d07db9d3b4a19106bf3b38f66f 350 PANTHER PTHR30386:SF7 22 348 6.3E-64 T 21-04-2016 RAF_RS01705 c07a89d07db9d3b4a19106bf3b38f66f 350 PANTHER PTHR30386 22 348 6.3E-64 T 21-04-2016 RAF_RS01705 c07a89d07db9d3b4a19106bf3b38f66f 350 Pfam PF00529 HlyD membrane-fusion protein of T1SS 42 345 3.9E-8 T 21-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RAF_RS01705 c07a89d07db9d3b4a19106bf3b38f66f 350 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 52 298 2.8E-15 T 21-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RAF_RS01705 c07a89d07db9d3b4a19106bf3b38f66f 350 SUPERFAMILY SSF111369 54 100 1.96E-12 T 21-04-2016 RAF_RS01705 c07a89d07db9d3b4a19106bf3b38f66f 350 SUPERFAMILY SSF111369 215 342 1.96E-12 T 21-04-2016 RAF_RS01705 c07a89d07db9d3b4a19106bf3b38f66f 350 SUPERFAMILY SSF111369 145 179 1.96E-12 T 21-04-2016 RAF_RS00785 88f27c5d8e138533c55966cf13fb26a3 138 SUPERFAMILY SSF50104 2 127 1.3E-37 T 21-04-2016 IPR008991 Translation protein SH3-like domain RAF_RS00785 88f27c5d8e138533c55966cf13fb26a3 138 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 1 127 30.32 T 21-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00785 88f27c5d8e138533c55966cf13fb26a3 138 PRINTS PR00061 Ribosomal protein L19 signature 8 37 2.6E-18 T 21-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00785 88f27c5d8e138533c55966cf13fb26a3 138 PRINTS PR00061 Ribosomal protein L19 signature 101 126 2.6E-18 T 21-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00785 88f27c5d8e138533c55966cf13fb26a3 138 PANTHER PTHR15680 2 126 2.1E-39 T 21-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00785 88f27c5d8e138533c55966cf13fb26a3 138 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 1 126 1.2E-47 T 21-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00785 88f27c5d8e138533c55966cf13fb26a3 138 PIRSF PIRSF002191 1 138 7.2E-42 T 21-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00785 88f27c5d8e138533c55966cf13fb26a3 138 Pfam PF01245 Ribosomal protein L19 10 126 7.6E-39 T 21-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS02610 1060054051186e8a8eebb6b476671f30 128 SUPERFAMILY SSF88723 1 122 7.29E-13 T 21-04-2016 IPR029060 PIN domain-like RAF_RS02610 1060054051186e8a8eebb6b476671f30 128 Pfam PF01850 PIN domain 4 117 8.5E-7 T 21-04-2016 IPR002716 PIN domain RAF_RS01750 55732e55bee57cd8ea4a71e60d85004a 158 Pfam PF01957 NfeD-like C-terminal, partner-binding 11 151 3.5E-11 T 21-04-2016 IPR002810 NfeD-like, C-terminal domain RAF_RS01750 55732e55bee57cd8ea4a71e60d85004a 158 Gene3D G3DSA:2.40.50.140 89 151 6.1E-6 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS04365 e44dfed35ee1acb183f43ab1d030b407 307 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 3 303 4.2E-102 T 21-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RAF_RS04365 e44dfed35ee1acb183f43ab1d030b407 307 SUPERFAMILY SSF53335 5 108 3.16E-46 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS04365 e44dfed35ee1acb183f43ab1d030b407 307 SUPERFAMILY SSF53335 207 303 3.16E-46 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS04365 e44dfed35ee1acb183f43ab1d030b407 307 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 5 305 35.669 T 21-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RAF_RS04365 e44dfed35ee1acb183f43ab1d030b407 307 PANTHER PTHR11265:SF0 1 307 1.2E-139 T 21-04-2016 RAF_RS04365 e44dfed35ee1acb183f43ab1d030b407 307 SUPERFAMILY SSF81799 109 207 6.15E-34 T 21-04-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RAF_RS04365 e44dfed35ee1acb183f43ab1d030b407 307 PIRSF PIRSF004486 1 306 1.3E-113 T 21-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RAF_RS04365 e44dfed35ee1acb183f43ab1d030b407 307 Gene3D G3DSA:3.40.50.150 5 105 6.6E-54 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS04365 e44dfed35ee1acb183f43ab1d030b407 307 Gene3D G3DSA:3.40.50.150 210 305 6.6E-54 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS04365 e44dfed35ee1acb183f43ab1d030b407 307 PANTHER PTHR11265 1 307 1.2E-139 T 21-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RAF_RS04365 e44dfed35ee1acb183f43ab1d030b407 307 Gene3D G3DSA:1.10.150.170 108 209 5.5E-34 T 21-04-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RAF_RS04365 e44dfed35ee1acb183f43ab1d030b407 307 Pfam PF01795 MraW methylase family 4 303 6.0E-100 T 21-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RAF_RS03940 2661fe57269a5cf0878378ef174f0427 459 PIRSF PIRSF000350 1 458 1.0E-88 T 21-04-2016 RAF_RS03940 2661fe57269a5cf0878378ef174f0427 459 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 340 449 9.0E-39 T 21-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RAF_RS03940 2661fe57269a5cf0878378ef174f0427 459 PANTHER PTHR22912:SF131 1 452 5.0E-281 T 21-04-2016 RAF_RS03940 2661fe57269a5cf0878378ef174f0427 459 Gene3D G3DSA:3.30.390.30 328 456 1.5E-49 T 21-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RAF_RS03940 2661fe57269a5cf0878378ef174f0427 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 401 416 1.1E-76 T 21-04-2016 RAF_RS03940 2661fe57269a5cf0878378ef174f0427 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 170 195 1.1E-76 T 21-04-2016 RAF_RS03940 2661fe57269a5cf0878378ef174f0427 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 336 357 1.1E-76 T 21-04-2016 RAF_RS03940 2661fe57269a5cf0878378ef174f0427 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 1.1E-76 T 21-04-2016 RAF_RS03940 2661fe57269a5cf0878378ef174f0427 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 1.1E-76 T 21-04-2016 RAF_RS03940 2661fe57269a5cf0878378ef174f0427 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 423 443 1.1E-76 T 21-04-2016 RAF_RS03940 2661fe57269a5cf0878378ef174f0427 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 134 143 1.1E-76 T 21-04-2016 RAF_RS03940 2661fe57269a5cf0878378ef174f0427 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 258 272 1.1E-76 T 21-04-2016 RAF_RS03940 2661fe57269a5cf0878378ef174f0427 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 301 308 1.1E-76 T 21-04-2016 RAF_RS03940 2661fe57269a5cf0878378ef174f0427 459 Gene3D G3DSA:3.50.50.60 2 133 5.4E-39 T 21-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAF_RS03940 2661fe57269a5cf0878378ef174f0427 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 257 273 6.1E-36 T 21-04-2016 RAF_RS03940 2661fe57269a5cf0878378ef174f0427 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 131 149 6.1E-36 T 21-04-2016 RAF_RS03940 2661fe57269a5cf0878378ef174f0427 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 6.1E-36 T 21-04-2016 RAF_RS03940 2661fe57269a5cf0878378ef174f0427 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 170 188 6.1E-36 T 21-04-2016 RAF_RS03940 2661fe57269a5cf0878378ef174f0427 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 286 308 6.1E-36 T 21-04-2016 RAF_RS03940 2661fe57269a5cf0878378ef174f0427 459 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 3 459 7.8E-166 T 21-04-2016 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084 RAF_RS03940 2661fe57269a5cf0878378ef174f0427 459 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 21-04-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 RAF_RS03940 2661fe57269a5cf0878378ef174f0427 459 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 321 3.5E-67 T 21-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAF_RS03940 2661fe57269a5cf0878378ef174f0427 459 Gene3D G3DSA:3.50.50.60 134 327 9.7E-51 T 21-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAF_RS03940 2661fe57269a5cf0878378ef174f0427 459 SUPERFAMILY SSF55424 336 458 6.19E-43 T 21-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 RAF_RS03940 2661fe57269a5cf0878378ef174f0427 459 PANTHER PTHR22912 1 452 5.0E-281 T 21-04-2016 RAF_RS03940 2661fe57269a5cf0878378ef174f0427 459 SUPERFAMILY SSF51905 1 315 3.99E-61 T 21-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAF_RS00520 458ced7a5caa4dadfc2450e5da7dc859 188 Gene3D G3DSA:2.70.40.10 3 186 1.1E-60 T 21-04-2016 IPR029054 dUTPase-like RAF_RS00520 458ced7a5caa4dadfc2450e5da7dc859 188 PANTHER PTHR11241 1 187 3.7E-70 T 21-04-2016 RAF_RS00520 458ced7a5caa4dadfc2450e5da7dc859 188 SUPERFAMILY SSF51283 2 186 7.07E-48 T 21-04-2016 IPR029054 dUTPase-like RAF_RS00520 458ced7a5caa4dadfc2450e5da7dc859 188 Hamap MF_00146 Deoxycytidine triphosphate deaminase [dcd]. 2 188 27.096 T 21-04-2016 IPR011962 Deoxycytidine triphosphate deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187|UniPathway: UPA00610 RAF_RS00520 458ced7a5caa4dadfc2450e5da7dc859 188 PANTHER PTHR11241:SF1 1 187 3.7E-70 T 21-04-2016 RAF_RS00520 458ced7a5caa4dadfc2450e5da7dc859 188 Pfam PF00692 dUTPase 82 167 2.7E-4 T 21-04-2016 IPR008180 Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase GO:0016787|GO:0046080 RAF_RS00520 458ced7a5caa4dadfc2450e5da7dc859 188 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 5 186 3.7E-47 T 21-04-2016 IPR011962 Deoxycytidine triphosphate deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187|UniPathway: UPA00610 RAF_RS05135 7a09a4159dbdf08843fea99f0167190c 215 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 4 205 1.5E-81 T 21-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05135 7a09a4159dbdf08843fea99f0167190c 215 Gene3D G3DSA:4.10.960.10 78 158 3.0E-28 T 21-04-2016 RAF_RS05135 7a09a4159dbdf08843fea99f0167190c 215 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 2 208 34.313 T 21-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05135 7a09a4159dbdf08843fea99f0167190c 215 PANTHER PTHR11229 1 209 3.5E-107 T 21-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05135 7a09a4159dbdf08843fea99f0167190c 215 SUPERFAMILY SSF50447 1 210 7.95E-77 T 21-04-2016 IPR009000 Translation protein, beta-barrel domain RAF_RS05135 7a09a4159dbdf08843fea99f0167190c 215 Pfam PF00297 Ribosomal protein L3 80 186 7.0E-17 T 21-04-2016 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05135 7a09a4159dbdf08843fea99f0167190c 215 ProSitePatterns PS00474 Ribosomal protein L3 signature. 102 125 - T 21-04-2016 IPR019926 Ribosomal protein L3, conserved site RAF_RS05135 7a09a4159dbdf08843fea99f0167190c 215 Gene3D G3DSA:2.40.30.10 3 41 7.2E-10 T 21-04-2016 RAF_RS05135 7a09a4159dbdf08843fea99f0167190c 215 Gene3D G3DSA:2.40.30.10 159 210 7.2E-10 T 21-04-2016 RAF_RS03265 efb0fedba4cca595c7fbdf09a052a767 288 Hamap MF_01576 Bifunctional protein FolD [folD]. 2 283 36.726 T 21-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RAF_RS03265 efb0fedba4cca595c7fbdf09a052a767 288 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 4 120 7.9E-36 T 21-04-2016 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RAF_RS03265 efb0fedba4cca595c7fbdf09a052a767 288 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 123 281 2.3E-64 T 21-04-2016 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RAF_RS03265 efb0fedba4cca595c7fbdf09a052a767 288 PANTHER PTHR10025 4 280 4.7E-137 T 21-04-2016 RAF_RS03265 efb0fedba4cca595c7fbdf09a052a767 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 155 175 2.4E-77 T 21-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RAF_RS03265 efb0fedba4cca595c7fbdf09a052a767 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 109 130 2.4E-77 T 21-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RAF_RS03265 efb0fedba4cca595c7fbdf09a052a767 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 33 55 2.4E-77 T 21-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RAF_RS03265 efb0fedba4cca595c7fbdf09a052a767 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 204 233 2.4E-77 T 21-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RAF_RS03265 efb0fedba4cca595c7fbdf09a052a767 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 239 255 2.4E-77 T 21-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RAF_RS03265 efb0fedba4cca595c7fbdf09a052a767 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 256 274 2.4E-77 T 21-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RAF_RS03265 efb0fedba4cca595c7fbdf09a052a767 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 74 101 2.4E-77 T 21-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RAF_RS03265 efb0fedba4cca595c7fbdf09a052a767 288 Gene3D G3DSA:3.40.50.720 140 264 5.1E-51 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS03265 efb0fedba4cca595c7fbdf09a052a767 288 SUPERFAMILY SSF53223 3 121 2.3E-36 T 21-04-2016 RAF_RS03265 efb0fedba4cca595c7fbdf09a052a767 288 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 260 268 - T 21-04-2016 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RAF_RS03265 efb0fedba4cca595c7fbdf09a052a767 288 Gene3D G3DSA:3.40.192.10 6 139 2.6E-42 T 21-04-2016 RAF_RS03265 efb0fedba4cca595c7fbdf09a052a767 288 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 75 100 - T 21-04-2016 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 RAF_RS03265 efb0fedba4cca595c7fbdf09a052a767 288 SUPERFAMILY SSF51735 122 279 1.13E-45 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS05840 5277d2f59a9b0d6740492032fd25417f 107 Gene3D G3DSA:3.40.30.10 10 103 1.8E-34 T 21-04-2016 IPR012336 Thioredoxin-like fold RAF_RS05840 5277d2f59a9b0d6740492032fd25417f 107 Pfam PF00462 Glutaredoxin 19 83 2.3E-19 T 21-04-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 RAF_RS05840 5277d2f59a9b0d6740492032fd25417f 107 SUPERFAMILY SSF52833 7 103 1.49E-34 T 21-04-2016 IPR012336 Thioredoxin-like fold RAF_RS05840 5277d2f59a9b0d6740492032fd25417f 107 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 8 103 4.3E-43 T 21-04-2016 IPR004480 Monothiol glutaredoxin-related RAF_RS05840 5277d2f59a9b0d6740492032fd25417f 107 PIRSF PIRSF005894 1 107 6.7E-47 T 21-04-2016 IPR014434 Monothiol glutaredoxin RAF_RS05840 5277d2f59a9b0d6740492032fd25417f 107 PANTHER PTHR10293 8 103 1.1E-52 T 21-04-2016 IPR004480 Monothiol glutaredoxin-related RAF_RS04355 a2b54dda5e06657e31587e265227954f 560 PANTHER PTHR30627 13 560 8.8E-125 T 21-04-2016 RAF_RS04355 a2b54dda5e06657e31587e265227954f 560 Gene3D G3DSA:3.40.710.10 212 546 2.1E-75 T 21-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RAF_RS04355 a2b54dda5e06657e31587e265227954f 560 SUPERFAMILY SSF56601 212 550 2.01E-76 T 21-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RAF_RS04355 a2b54dda5e06657e31587e265227954f 560 Pfam PF03717 Penicillin-binding Protein dimerisation domain 69 193 1.2E-14 T 21-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 RAF_RS04355 a2b54dda5e06657e31587e265227954f 560 SUPERFAMILY SSF56519 67 197 5.89E-32 T 21-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 RAF_RS04355 a2b54dda5e06657e31587e265227954f 560 PANTHER PTHR30627:SF1 13 560 8.8E-125 T 21-04-2016 RAF_RS04355 a2b54dda5e06657e31587e265227954f 560 Gene3D G3DSA:3.90.1310.10 135 198 2.0E-13 T 21-04-2016 RAF_RS04355 a2b54dda5e06657e31587e265227954f 560 Pfam PF00905 Penicillin binding protein transpeptidase domain 240 521 9.5E-57 T 21-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RAF_RS01555 7c8c90d9aa387285fd9ae0cfa970fd1a 131 SUPERFAMILY SSF52540 4 125 6.45E-45 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01555 7c8c90d9aa387285fd9ae0cfa970fd1a 131 Pfam PF00005 ABC transporter 9 64 1.3E-11 T 21-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAF_RS01555 7c8c90d9aa387285fd9ae0cfa970fd1a 131 PANTHER PTHR24221 5 122 1.4E-67 T 21-04-2016 RAF_RS01555 7c8c90d9aa387285fd9ae0cfa970fd1a 131 Gene3D G3DSA:3.40.50.300 4 126 6.8E-44 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01410 99fc2cc4b94b847aade923dd5a2301ea 96 Gene3D G3DSA:1.10.3860.10 4 90 2.0E-11 T 21-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RAF_RS01410 99fc2cc4b94b847aade923dd5a2301ea 96 Pfam PF00375 Sodium:dicarboxylate symporter family 18 86 6.8E-10 T 21-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RAF_RS01410 99fc2cc4b94b847aade923dd5a2301ea 96 SUPERFAMILY SSF118215 8 87 5.23E-13 T 21-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 RAF_RS01655 e29f9346f95dcadc67a7852b39bcbc56 53 SUPERFAMILY SSF55166 1 51 4.55E-12 T 21-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain RAF_RS01655 e29f9346f95dcadc67a7852b39bcbc56 53 Pfam PF01427 D-ala-D-ala dipeptidase 1 50 3.1E-4 T 21-04-2016 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 RAF_RS01655 e29f9346f95dcadc67a7852b39bcbc56 53 Gene3D G3DSA:3.30.1380.10 1 52 2.0E-12 T 21-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain RAF_RS03765 9a331f37b2aae9a18fc7923dddaeb5e9 612 Pfam PF16189 Creatinase/Prolidase N-terminal domain 147 321 3.6E-32 T 21-04-2016 RAF_RS03765 9a331f37b2aae9a18fc7923dddaeb5e9 612 Pfam PF00557 Metallopeptidase family M24 360 546 1.3E-44 T 21-04-2016 IPR000994 Peptidase M24, structural domain RAF_RS03765 9a331f37b2aae9a18fc7923dddaeb5e9 612 Gene3D G3DSA:3.40.350.10 17 135 3.0E-18 T 21-04-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RAF_RS03765 9a331f37b2aae9a18fc7923dddaeb5e9 612 Gene3D G3DSA:3.90.230.10 315 577 1.0E-62 T 21-04-2016 IPR000994 Peptidase M24, structural domain RAF_RS03765 9a331f37b2aae9a18fc7923dddaeb5e9 612 SUPERFAMILY SSF53092 23 136 2.09E-13 T 21-04-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal RAF_RS03765 9a331f37b2aae9a18fc7923dddaeb5e9 612 SUPERFAMILY SSF55920 359 576 1.57E-52 T 21-04-2016 IPR000994 Peptidase M24, structural domain RAF_RS03765 9a331f37b2aae9a18fc7923dddaeb5e9 612 PANTHER PTHR10804:SF105 13 177 1.8E-232 T 21-04-2016 RAF_RS03765 9a331f37b2aae9a18fc7923dddaeb5e9 612 PANTHER PTHR10804:SF105 297 608 1.8E-232 T 21-04-2016 RAF_RS03765 9a331f37b2aae9a18fc7923dddaeb5e9 612 Pfam PF16188 C-terminal region of peptidase_M24 551 606 1.2E-13 T 21-04-2016 IPR032416 Peptidase M24, C-terminal domain RAF_RS03765 9a331f37b2aae9a18fc7923dddaeb5e9 612 PANTHER PTHR10804 13 177 1.8E-232 T 21-04-2016 RAF_RS03765 9a331f37b2aae9a18fc7923dddaeb5e9 612 PANTHER PTHR10804 297 608 1.8E-232 T 21-04-2016 RAF_RS03765 9a331f37b2aae9a18fc7923dddaeb5e9 612 Pfam PF01321 Creatinase/Prolidase N-terminal domain 19 132 2.5E-12 T 21-04-2016 IPR000587 Creatinase, N-terminal GO:0016787 RAF_RS05475 56402c36f4ae19bed329fd7c53c12dc9 576 SUPERFAMILY SSF52540 333 573 1.81E-78 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05475 56402c36f4ae19bed329fd7c53c12dc9 576 PANTHER PTHR24221 6 574 5.5E-182 T 21-04-2016 RAF_RS05475 56402c36f4ae19bed329fd7c53c12dc9 576 Gene3D G3DSA:1.20.1560.10 8 319 1.1E-62 T 21-04-2016 RAF_RS05475 56402c36f4ae19bed329fd7c53c12dc9 576 Gene3D G3DSA:3.40.50.300 336 567 2.9E-73 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05475 56402c36f4ae19bed329fd7c53c12dc9 576 SMART SM00382 363 549 2.0E-14 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS05475 56402c36f4ae19bed329fd7c53c12dc9 576 Pfam PF00005 ABC transporter 355 502 4.6E-33 T 21-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAF_RS05475 56402c36f4ae19bed329fd7c53c12dc9 576 SUPERFAMILY SSF90123 8 319 9.94E-61 T 21-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RAF_RS05475 56402c36f4ae19bed329fd7c53c12dc9 576 ProSitePatterns PS00211 ABC transporters family signature. 475 489 - T 21-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAF_RS05475 56402c36f4ae19bed329fd7c53c12dc9 576 Pfam PF00664 ABC transporter transmembrane region 20 285 3.4E-43 T 21-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RAF_RS02845 b82efd329cff2a85cab1efaed23872ec 532 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 22 529 2.2E-218 T 21-04-2016 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005507|GO:0005886|GO:0006810|GO:0022900|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RAF_RS02845 b82efd329cff2a85cab1efaed23872ec 532 PRINTS PR01165 Cytochrome c oxidase subunit I signature 357 375 5.8E-147 T 21-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RAF_RS02845 b82efd329cff2a85cab1efaed23872ec 532 PRINTS PR01165 Cytochrome c oxidase subunit I signature 252 273 5.8E-147 T 21-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RAF_RS02845 b82efd329cff2a85cab1efaed23872ec 532 PRINTS PR01165 Cytochrome c oxidase subunit I signature 385 404 5.8E-147 T 21-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RAF_RS02845 b82efd329cff2a85cab1efaed23872ec 532 PRINTS PR01165 Cytochrome c oxidase subunit I signature 172 190 5.8E-147 T 21-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RAF_RS02845 b82efd329cff2a85cab1efaed23872ec 532 PRINTS PR01165 Cytochrome c oxidase subunit I signature 435 456 5.8E-147 T 21-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RAF_RS02845 b82efd329cff2a85cab1efaed23872ec 532 PRINTS PR01165 Cytochrome c oxidase subunit I signature 140 152 5.8E-147 T 21-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RAF_RS02845 b82efd329cff2a85cab1efaed23872ec 532 PRINTS PR01165 Cytochrome c oxidase subunit I signature 298 313 5.8E-147 T 21-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RAF_RS02845 b82efd329cff2a85cab1efaed23872ec 532 PRINTS PR01165 Cytochrome c oxidase subunit I signature 98 122 5.8E-147 T 21-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RAF_RS02845 b82efd329cff2a85cab1efaed23872ec 532 PRINTS PR01165 Cytochrome c oxidase subunit I signature 21 46 5.8E-147 T 21-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RAF_RS02845 b82efd329cff2a85cab1efaed23872ec 532 PRINTS PR01165 Cytochrome c oxidase subunit I signature 70 93 5.8E-147 T 21-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RAF_RS02845 b82efd329cff2a85cab1efaed23872ec 532 PRINTS PR01165 Cytochrome c oxidase subunit I signature 201 220 5.8E-147 T 21-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RAF_RS02845 b82efd329cff2a85cab1efaed23872ec 532 PRINTS PR01165 Cytochrome c oxidase subunit I signature 322 343 5.8E-147 T 21-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RAF_RS02845 b82efd329cff2a85cab1efaed23872ec 532 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 30 475 2.7E-154 T 21-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RAF_RS02845 b82efd329cff2a85cab1efaed23872ec 532 PANTHER PTHR10422 7 531 0.0 T 21-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RAF_RS02845 b82efd329cff2a85cab1efaed23872ec 532 PANTHER PTHR10422:SF18 7 531 0.0 T 21-04-2016 RAF_RS02845 b82efd329cff2a85cab1efaed23872ec 532 SUPERFAMILY SSF81442 18 530 9.29E-214 T 21-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RAF_RS02845 b82efd329cff2a85cab1efaed23872ec 532 Gene3D G3DSA:1.20.210.10 33 496 2.5E-225 T 21-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RAF_RS02845 b82efd329cff2a85cab1efaed23872ec 532 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 254 308 - T 21-04-2016 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RAF_RS05880 116c44caf2bb01b75213e389aa59ee8a 102 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 4 92 1.3E-18 T 21-04-2016 IPR010106 Conserved hypothetical protein CHP01784 RAF_RS05880 116c44caf2bb01b75213e389aa59ee8a 102 Pfam PF12784 PD-(D/E)XK nuclease family transposase 2 102 5.7E-25 T 21-04-2016 RAF_RS01255 a27347486a9c3e27f4dbc605b000a091 324 SUPERFAMILY SSF48019 212 310 1.43E-7 T 21-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 RAF_RS01255 a27347486a9c3e27f4dbc605b000a091 324 PANTHER PTHR34388 1 308 2.5E-17 T 21-04-2016 RAF_RS01255 a27347486a9c3e27f4dbc605b000a091 324 SUPERFAMILY SSF52540 10 199 2.44E-6 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01255 a27347486a9c3e27f4dbc605b000a091 324 Gene3D G3DSA:1.10.8.60 135 217 4.0E-4 T 21-04-2016 RAF_RS01985 2050bbac8e32bef17570fdb99836e230 487 PANTHER PTHR22773 2 480 5.5E-96 T 21-04-2016 RAF_RS01985 2050bbac8e32bef17570fdb99836e230 487 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 244 270 1.7E-13 T 21-04-2016 RAF_RS01985 2050bbac8e32bef17570fdb99836e230 487 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 422 441 1.7E-13 T 21-04-2016 RAF_RS01985 2050bbac8e32bef17570fdb99836e230 487 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 81 106 1.7E-13 T 21-04-2016 RAF_RS01985 2050bbac8e32bef17570fdb99836e230 487 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 222 243 1.7E-13 T 21-04-2016 RAF_RS01985 2050bbac8e32bef17570fdb99836e230 487 Pfam PF00361 Proton-conducting membrane transporter 134 427 8.4E-45 T 21-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RAF_RS01985 2050bbac8e32bef17570fdb99836e230 487 PANTHER PTHR22773:SF46 2 480 5.5E-96 T 21-04-2016 RAF_RS03610 d12262eda3d667fb8379d1cd4b313fbe 334 PANTHER PTHR21262:SF0 163 326 8.1E-32 T 21-04-2016 RAF_RS03610 d12262eda3d667fb8379d1cd4b313fbe 334 PANTHER PTHR21262 163 326 8.1E-32 T 21-04-2016 RAF_RS03610 d12262eda3d667fb8379d1cd4b313fbe 334 Gene3D G3DSA:3.30.460.10 173 306 3.7E-31 T 21-04-2016 RAF_RS03610 d12262eda3d667fb8379d1cd4b313fbe 334 SMART SM00954 216 326 5.2E-32 T 21-04-2016 IPR007685 RelA/SpoT GO:0015969 RAF_RS03610 d12262eda3d667fb8379d1cd4b313fbe 334 SUPERFAMILY SSF81301 173 325 1.18E-36 T 21-04-2016 RAF_RS03610 d12262eda3d667fb8379d1cd4b313fbe 334 Pfam PF04607 Region found in RelA / SpoT proteins 217 326 8.9E-24 T 21-04-2016 IPR007685 RelA/SpoT GO:0015969 RAF_RS01380 d4c6962ea42d122c0137739cb7564e92 102 PRINTS PR00160 Glutaredoxin signature 53 66 7.88E-14 T 21-04-2016 IPR014025 Glutaredoxin subgroup RAF_RS01380 d4c6962ea42d122c0137739cb7564e92 102 PRINTS PR00160 Glutaredoxin signature 67 80 7.88E-14 T 21-04-2016 IPR014025 Glutaredoxin subgroup RAF_RS01380 d4c6962ea42d122c0137739cb7564e92 102 PRINTS PR00160 Glutaredoxin signature 9 27 7.88E-14 T 21-04-2016 IPR014025 Glutaredoxin subgroup RAF_RS01380 d4c6962ea42d122c0137739cb7564e92 102 PANTHER PTHR10168 9 91 3.1E-23 T 21-04-2016 RAF_RS01380 d4c6962ea42d122c0137739cb7564e92 102 Gene3D G3DSA:3.40.30.10 7 87 2.1E-26 T 21-04-2016 IPR012336 Thioredoxin-like fold RAF_RS01380 d4c6962ea42d122c0137739cb7564e92 102 SUPERFAMILY SSF52833 7 91 1.07E-25 T 21-04-2016 IPR012336 Thioredoxin-like fold RAF_RS01380 d4c6962ea42d122c0137739cb7564e92 102 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 9 89 2.3E-34 T 21-04-2016 IPR011900 Glutaredoxin, GrxC GO:0045454 RAF_RS01380 d4c6962ea42d122c0137739cb7564e92 102 Pfam PF00462 Glutaredoxin 9 70 7.2E-20 T 21-04-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 RAF_RS01380 d4c6962ea42d122c0137739cb7564e92 102 ProSitePatterns PS00195 Glutaredoxin active site. 11 27 - T 21-04-2016 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 RAF_RS03670 93fb1afe7f772d2abaa47771ebba894a 73 SUPERFAMILY SSF55729 13 62 7.62E-5 T 21-04-2016 IPR016181 Acyl-CoA N-acyltransferase RAF_RS03670 93fb1afe7f772d2abaa47771ebba894a 73 Gene3D G3DSA:3.40.630.30 12 62 7.0E-5 T 21-04-2016 IPR016181 Acyl-CoA N-acyltransferase RAF_RS03190 5c706e384d579c0adfd994580854785e 475 SUPERFAMILY SSF53720 6 474 1.7E-147 T 21-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 RAF_RS03190 5c706e384d579c0adfd994580854785e 475 Pfam PF00171 Aldehyde dehydrogenase family 22 470 3.0E-149 T 21-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 RAF_RS03190 5c706e384d579c0adfd994580854785e 475 PANTHER PTHR11699 10 475 2.8E-224 T 21-04-2016 RAF_RS03190 5c706e384d579c0adfd994580854785e 475 Gene3D G3DSA:3.40.605.10 10 263 5.4E-83 T 21-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 RAF_RS03190 5c706e384d579c0adfd994580854785e 475 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 250 257 - T 21-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 RAF_RS03190 5c706e384d579c0adfd994580854785e 475 Gene3D G3DSA:3.40.309.10 264 445 2.5E-64 T 21-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 RAF_RS03190 5c706e384d579c0adfd994580854785e 475 PANTHER PTHR11699:SF49 10 475 2.8E-224 T 21-04-2016 RAF_RS05505 9da076ae640080f98ab4b365393c03ea 424 PANTHER PTHR22777 4 414 6.8E-119 T 21-04-2016 RAF_RS05505 9da076ae640080f98ab4b365393c03ea 424 SMART SM00116 208 257 3.2 T 21-04-2016 IPR000644 CBS domain RAF_RS05505 9da076ae640080f98ab4b365393c03ea 424 SMART SM00116 274 322 3.0 T 21-04-2016 IPR000644 CBS domain RAF_RS05505 9da076ae640080f98ab4b365393c03ea 424 Gene3D G3DSA:3.30.465.10 330 415 1.5E-22 T 21-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 RAF_RS05505 9da076ae640080f98ab4b365393c03ea 424 Pfam PF03471 Transporter associated domain 339 414 1.5E-18 T 21-04-2016 IPR005170 Transporter-associated domain RAF_RS05505 9da076ae640080f98ab4b365393c03ea 424 SMART SM01091 337 415 2.2E-22 T 21-04-2016 IPR005170 Transporter-associated domain RAF_RS05505 9da076ae640080f98ab4b365393c03ea 424 SUPERFAMILY SSF56176 335 418 1.83E-18 T 21-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 RAF_RS05505 9da076ae640080f98ab4b365393c03ea 424 Gene3D G3DSA:3.10.580.10 186 329 1.0E-21 T 21-04-2016 RAF_RS05505 9da076ae640080f98ab4b365393c03ea 424 Pfam PF00571 CBS domain 273 322 2.3E-6 T 21-04-2016 IPR000644 CBS domain RAF_RS05505 9da076ae640080f98ab4b365393c03ea 424 Pfam PF00571 CBS domain 199 257 5.8E-5 T 21-04-2016 IPR000644 CBS domain RAF_RS05505 9da076ae640080f98ab4b365393c03ea 424 SUPERFAMILY SSF54631 195 338 1.53E-33 T 21-04-2016 RAF_RS05505 9da076ae640080f98ab4b365393c03ea 424 Pfam PF01595 Domain of unknown function DUF21 7 180 6.9E-36 T 21-04-2016 IPR002550 Domain of unknown function DUF21 RAF_RS01720 4c2a24ce414ffac307829a34a4a13964 408 PANTHER PTHR33121:SF10 171 399 1.6E-49 T 21-04-2016 RAF_RS01720 4c2a24ce414ffac307829a34a4a13964 408 SUPERFAMILY SSF141868 171 400 5.49E-61 T 21-04-2016 IPR001633 EAL domain RAF_RS01720 4c2a24ce414ffac307829a34a4a13964 408 Gene3D G3DSA:3.20.20.450 172 400 3.0E-59 T 21-04-2016 IPR001633 EAL domain RAF_RS01720 4c2a24ce414ffac307829a34a4a13964 408 Pfam PF00563 EAL domain 173 399 2.2E-61 T 21-04-2016 IPR001633 EAL domain RAF_RS01720 4c2a24ce414ffac307829a34a4a13964 408 SMART SM00052 165 405 8.5E-44 T 21-04-2016 IPR001633 EAL domain RAF_RS01720 4c2a24ce414ffac307829a34a4a13964 408 PANTHER PTHR33121 171 399 1.6E-49 T 21-04-2016 RAF_RS03650 ceb236ec9e4c8f651f41ffcdeb23dd4d 201 Gene3D G3DSA:3.90.226.10 3 193 3.3E-87 T 21-04-2016 IPR029045 ClpP/crotonase-like domain RAF_RS03650 ceb236ec9e4c8f651f41ffcdeb23dd4d 201 PRINTS PR00127 Clp protease catalytic subunit P signature 19 34 1.1E-50 T 21-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RAF_RS03650 ceb236ec9e4c8f651f41ffcdeb23dd4d 201 PRINTS PR00127 Clp protease catalytic subunit P signature 111 130 1.1E-50 T 21-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RAF_RS03650 ceb236ec9e4c8f651f41ffcdeb23dd4d 201 PRINTS PR00127 Clp protease catalytic subunit P signature 90 107 1.1E-50 T 21-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RAF_RS03650 ceb236ec9e4c8f651f41ffcdeb23dd4d 201 PRINTS PR00127 Clp protease catalytic subunit P signature 168 187 1.1E-50 T 21-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RAF_RS03650 ceb236ec9e4c8f651f41ffcdeb23dd4d 201 PRINTS PR00127 Clp protease catalytic subunit P signature 59 79 1.1E-50 T 21-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RAF_RS03650 ceb236ec9e4c8f651f41ffcdeb23dd4d 201 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 1 191 4.0E-97 T 21-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RAF_RS03650 ceb236ec9e4c8f651f41ffcdeb23dd4d 201 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 112 125 - T 21-04-2016 IPR033135 ClpP, histidine active site RAF_RS03650 ceb236ec9e4c8f651f41ffcdeb23dd4d 201 Pfam PF00574 Clp protease 12 192 1.4E-86 T 21-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA RAF_RS03650 ceb236ec9e4c8f651f41ffcdeb23dd4d 201 SUPERFAMILY SSF52096 11 197 8.03E-73 T 21-04-2016 IPR029045 ClpP/crotonase-like domain RAF_RS03650 ceb236ec9e4c8f651f41ffcdeb23dd4d 201 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 3 193 41.645 T 21-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RAF_RS03650 ceb236ec9e4c8f651f41ffcdeb23dd4d 201 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 90 101 - T 21-04-2016 IPR018215 ClpP, Ser active site RAF_RS03650 ceb236ec9e4c8f651f41ffcdeb23dd4d 201 PANTHER PTHR10381 1 193 1.1E-134 T 21-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA RAF_RS03650 ceb236ec9e4c8f651f41ffcdeb23dd4d 201 PANTHER PTHR10381:SF11 1 193 1.1E-134 T 21-04-2016 RAF_RS00410 0fd5960a3fbcf86721acbda94b7c4653 90 Pfam PF13489 Methyltransferase domain 39 89 1.6E-6 T 21-04-2016 RAF_RS00410 0fd5960a3fbcf86721acbda94b7c4653 90 SUPERFAMILY SSF53335 21 90 5.58E-12 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS00410 0fd5960a3fbcf86721acbda94b7c4653 90 Gene3D G3DSA:3.40.50.150 22 89 1.7E-11 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS05070 544abfdbc6ac3ec30581634ce5cd7e2d 101 PANTHER PTHR19836 1 101 1.7E-45 T 21-04-2016 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05070 544abfdbc6ac3ec30581634ce5cd7e2d 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 24.941 T 21-04-2016 IPR023036 Ribosomal protein S14, bacterial/plastid RAF_RS05070 544abfdbc6ac3ec30581634ce5cd7e2d 101 Gene3D G3DSA:4.10.830.10 42 101 1.3E-28 T 21-04-2016 RAF_RS05070 544abfdbc6ac3ec30581634ce5cd7e2d 101 SUPERFAMILY SSF57716 2 101 2.64E-32 T 21-04-2016 RAF_RS05070 544abfdbc6ac3ec30581634ce5cd7e2d 101 Pfam PF00253 Ribosomal protein S14p/S29e 48 100 2.6E-24 T 21-04-2016 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05070 544abfdbc6ac3ec30581634ce5cd7e2d 101 ProSitePatterns PS00527 Ribosomal protein S14 signature. 63 85 - T 21-04-2016 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 RAF_RS02105 37b699001e49073db6b9807eeae531f8 230 Pfam PF01863 Protein of unknown function DUF45 25 221 5.7E-46 T 21-04-2016 IPR002725 Protein of unknown function DUF45 RAF_RS02105 37b699001e49073db6b9807eeae531f8 230 PANTHER PTHR30399 5 228 6.6E-37 T 21-04-2016 RAF_RS02105 37b699001e49073db6b9807eeae531f8 230 PANTHER PTHR30399:SF3 5 228 6.6E-37 T 21-04-2016 RAF_RS01675 ab07ab1d6abaccf8f3486f06a54088fc 450 PANTHER PTHR24423 3 157 6.2E-39 T 21-04-2016 RAF_RS01675 ab07ab1d6abaccf8f3486f06a54088fc 450 Pfam PF00990 Diguanylate cyclase, GGDEF domain 289 446 1.4E-49 T 21-04-2016 IPR000160 GGDEF domain RAF_RS01675 ab07ab1d6abaccf8f3486f06a54088fc 450 SUPERFAMILY SSF52172 147 281 1.04E-18 T 21-04-2016 IPR011006 CheY-like superfamily RAF_RS01675 ab07ab1d6abaccf8f3486f06a54088fc 450 Pfam PF00072 Response regulator receiver domain 154 265 9.9E-8 T 21-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RAF_RS01675 ab07ab1d6abaccf8f3486f06a54088fc 450 Pfam PF00072 Response regulator receiver domain 4 115 5.3E-29 T 21-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RAF_RS01675 ab07ab1d6abaccf8f3486f06a54088fc 450 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 287 448 1.6E-52 T 21-04-2016 IPR000160 GGDEF domain RAF_RS01675 ab07ab1d6abaccf8f3486f06a54088fc 450 SUPERFAMILY SSF52172 1 132 4.41E-39 T 21-04-2016 IPR011006 CheY-like superfamily RAF_RS01675 ab07ab1d6abaccf8f3486f06a54088fc 450 Gene3D G3DSA:3.30.70.270 291 448 2.1E-53 T 21-04-2016 RAF_RS01675 ab07ab1d6abaccf8f3486f06a54088fc 450 SUPERFAMILY SSF55073 293 448 6.51E-48 T 21-04-2016 IPR029787 Nucleotide cyclase RAF_RS01675 ab07ab1d6abaccf8f3486f06a54088fc 450 Gene3D G3DSA:3.40.50.2300 2 128 2.9E-42 T 21-04-2016 RAF_RS01675 ab07ab1d6abaccf8f3486f06a54088fc 450 Gene3D G3DSA:3.40.50.2300 150 278 5.2E-16 T 21-04-2016 RAF_RS01675 ab07ab1d6abaccf8f3486f06a54088fc 450 SMART SM00448 2 115 3.6E-39 T 21-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RAF_RS01675 ab07ab1d6abaccf8f3486f06a54088fc 450 SMART SM00448 152 264 0.0064 T 21-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 RAF_RS01675 ab07ab1d6abaccf8f3486f06a54088fc 450 SMART SM00267 278 450 5.2E-54 T 21-04-2016 IPR000160 GGDEF domain RAF_RS04565 98ac7ab1b69d8e04c0f9472ea26ebff7 206 PANTHER PTHR12151 11 206 3.0E-63 T 21-04-2016 IPR003782 Copper chaperone SCO1/SenC RAF_RS04565 98ac7ab1b69d8e04c0f9472ea26ebff7 206 SUPERFAMILY SSF52833 50 204 2.29E-51 T 21-04-2016 IPR012336 Thioredoxin-like fold RAF_RS04565 98ac7ab1b69d8e04c0f9472ea26ebff7 206 Gene3D G3DSA:3.40.30.10 11 204 1.6E-59 T 21-04-2016 IPR012336 Thioredoxin-like fold RAF_RS04565 98ac7ab1b69d8e04c0f9472ea26ebff7 206 Pfam PF02630 SCO1/SenC 17 193 2.3E-70 T 21-04-2016 IPR003782 Copper chaperone SCO1/SenC RAF_RS04135 d05695d1b99dad0f939d0cb57716cbdd 444 SUPERFAMILY SSF52540 61 284 1.04E-47 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04135 d05695d1b99dad0f939d0cb57716cbdd 444 SUPERFAMILY SSF54211 296 421 1.82E-30 T 21-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RAF_RS04135 d05695d1b99dad0f939d0cb57716cbdd 444 SUPERFAMILY SSF54211 248 262 1.82E-30 T 21-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RAF_RS04135 d05695d1b99dad0f939d0cb57716cbdd 444 Pfam PF13541 Subunit ChlI of Mg-chelatase 353 421 6.6E-7 T 21-04-2016 RAF_RS04135 d05695d1b99dad0f939d0cb57716cbdd 444 PANTHER PTHR32472:SF10 2 418 2.4E-166 T 21-04-2016 RAF_RS04135 d05695d1b99dad0f939d0cb57716cbdd 444 SMART SM00382 81 237 1.2E-9 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS04135 d05695d1b99dad0f939d0cb57716cbdd 444 Pfam PF13481 AAA domain 65 215 3.1E-12 T 21-04-2016 RAF_RS04135 d05695d1b99dad0f939d0cb57716cbdd 444 TIGRFAM TIGR00416 sms: DNA repair protein RadA 2 421 2.8E-157 T 21-04-2016 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 RAF_RS04135 d05695d1b99dad0f939d0cb57716cbdd 444 PANTHER PTHR32472 2 418 2.4E-166 T 21-04-2016 RAF_RS04135 d05695d1b99dad0f939d0cb57716cbdd 444 PRINTS PR01874 DNA repair protein radA signature 206 234 7.8E-89 T 21-04-2016 RAF_RS04135 d05695d1b99dad0f939d0cb57716cbdd 444 PRINTS PR01874 DNA repair protein radA signature 241 267 7.8E-89 T 21-04-2016 RAF_RS04135 d05695d1b99dad0f939d0cb57716cbdd 444 PRINTS PR01874 DNA repair protein radA signature 315 338 7.8E-89 T 21-04-2016 RAF_RS04135 d05695d1b99dad0f939d0cb57716cbdd 444 PRINTS PR01874 DNA repair protein radA signature 73 101 7.8E-89 T 21-04-2016 RAF_RS04135 d05695d1b99dad0f939d0cb57716cbdd 444 PRINTS PR01874 DNA repair protein radA signature 167 191 7.8E-89 T 21-04-2016 RAF_RS04135 d05695d1b99dad0f939d0cb57716cbdd 444 PRINTS PR01874 DNA repair protein radA signature 8 32 7.8E-89 T 21-04-2016 RAF_RS04135 d05695d1b99dad0f939d0cb57716cbdd 444 PRINTS PR01874 DNA repair protein radA signature 115 132 7.8E-89 T 21-04-2016 RAF_RS04135 d05695d1b99dad0f939d0cb57716cbdd 444 Gene3D G3DSA:3.30.230.10 277 421 1.0E-25 T 21-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAF_RS04135 d05695d1b99dad0f939d0cb57716cbdd 444 Gene3D G3DSA:3.40.50.300 62 269 3.8E-47 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01265 6540eccae8fb9628cb552e999be6ee21 283 PANTHER PTHR11403 10 283 2.3E-139 T 21-04-2016 IPR024791 Cytochrome c oxidase subunit III GO:0015002|GO:0016020|GO:0019646 RAF_RS01265 6540eccae8fb9628cb552e999be6ee21 283 Pfam PF00510 Cytochrome c oxidase subunit III 17 283 5.4E-90 T 21-04-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 RAF_RS01265 6540eccae8fb9628cb552e999be6ee21 283 Gene3D G3DSA:1.20.120.80 84 282 5.9E-69 T 21-04-2016 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 RAF_RS01265 6540eccae8fb9628cb552e999be6ee21 283 PANTHER PTHR11403:SF7 10 283 2.3E-139 T 21-04-2016 RAF_RS01265 6540eccae8fb9628cb552e999be6ee21 283 Gene3D G3DSA:1.10.287.70 15 82 2.2E-24 T 21-04-2016 RAF_RS01265 6540eccae8fb9628cb552e999be6ee21 283 SUPERFAMILY SSF81452 14 282 3.53E-90 T 21-04-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 RAF_RS01495 4ef87d011d826344365ecdf7f5a99d0e 456 PANTHER PTHR30365:SF8 1 455 2.3E-233 T 21-04-2016 RAF_RS01495 4ef87d011d826344365ecdf7f5a99d0e 456 PIRSF PIRSF006446 1 452 9.2E-191 T 21-04-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 RAF_RS01495 4ef87d011d826344365ecdf7f5a99d0e 456 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 8 434 7.0E-159 T 21-04-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 RAF_RS01495 4ef87d011d826344365ecdf7f5a99d0e 456 PANTHER PTHR30365 1 455 2.3E-233 T 21-04-2016 RAF_RS05175 1a1bf4bd99a6ba2ff25f51b03bfb180d 82 Gene3D G3DSA:3.40.1620.10 7 41 6.2E-8 T 21-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RAF_RS05175 1a1bf4bd99a6ba2ff25f51b03bfb180d 82 SUPERFAMILY SSF143120 8 42 6.67E-8 T 21-04-2016 RAF_RS05175 1a1bf4bd99a6ba2ff25f51b03bfb180d 82 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 8 42 2.6E-7 T 21-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RAF_RS05175 1a1bf4bd99a6ba2ff25f51b03bfb180d 82 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 11 42 6.7E-9 T 21-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RAF_RS04190 d6109d9ce7ec1d479dbdf102e154f906 142 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 48 66 - T 21-04-2016 IPR030489 Transcription regulator Rrf2-type, conserved site RAF_RS04190 d6109d9ce7ec1d479dbdf102e154f906 142 PANTHER PTHR33221:SF4 2 129 1.6E-50 T 21-04-2016 RAF_RS04190 d6109d9ce7ec1d479dbdf102e154f906 142 Pfam PF02082 Transcriptional regulator 1 81 6.7E-24 T 21-04-2016 IPR000944 Transcription regulator Rrf2-type RAF_RS04190 d6109d9ce7ec1d479dbdf102e154f906 142 Gene3D G3DSA:1.10.10.10 1 131 4.6E-41 T 21-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RAF_RS04190 d6109d9ce7ec1d479dbdf102e154f906 142 PANTHER PTHR33221 2 129 1.6E-50 T 21-04-2016 RAF_RS04190 d6109d9ce7ec1d479dbdf102e154f906 142 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 130 3.8E-36 T 21-04-2016 IPR000944 Transcription regulator Rrf2-type RAF_RS04190 d6109d9ce7ec1d479dbdf102e154f906 142 SUPERFAMILY SSF46785 2 130 2.35E-34 T 21-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RAF_RS01225 62edc07703e5bd6e4514389cf1ee106d 373 SUPERFAMILY SSF46565 3 104 1.01E-31 T 21-04-2016 IPR001623 DnaJ domain RAF_RS01225 62edc07703e5bd6e4514389cf1ee106d 373 Pfam PF01556 DnaJ C terminal domain 123 336 2.3E-39 T 21-04-2016 IPR002939 Chaperone DnaJ, C-terminal RAF_RS01225 62edc07703e5bd6e4514389cf1ee106d 373 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 1 371 38.54 T 21-04-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 RAF_RS01225 62edc07703e5bd6e4514389cf1ee106d 373 Gene3D G3DSA:1.10.287.110 2 102 2.9E-33 T 21-04-2016 IPR001623 DnaJ domain RAF_RS01225 62edc07703e5bd6e4514389cf1ee106d 373 Gene3D G3DSA:2.10.230.10 146 213 4.1E-21 T 21-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 RAF_RS01225 62edc07703e5bd6e4514389cf1ee106d 373 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 4 353 4.6E-134 T 21-04-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 RAF_RS01225 62edc07703e5bd6e4514389cf1ee106d 373 PRINTS PR00625 DnaJ domain signature 24 39 5.5E-26 T 21-04-2016 IPR001623 DnaJ domain RAF_RS01225 62edc07703e5bd6e4514389cf1ee106d 373 PRINTS PR00625 DnaJ domain signature 40 60 5.5E-26 T 21-04-2016 IPR001623 DnaJ domain RAF_RS01225 62edc07703e5bd6e4514389cf1ee106d 373 PRINTS PR00625 DnaJ domain signature 6 24 5.5E-26 T 21-04-2016 IPR001623 DnaJ domain RAF_RS01225 62edc07703e5bd6e4514389cf1ee106d 373 PRINTS PR00625 DnaJ domain signature 60 79 5.5E-26 T 21-04-2016 IPR001623 DnaJ domain RAF_RS01225 62edc07703e5bd6e4514389cf1ee106d 373 SUPERFAMILY SSF57938 136 213 2.22E-20 T 21-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 RAF_RS01225 62edc07703e5bd6e4514389cf1ee106d 373 SUPERFAMILY SSF49493 261 347 1.57E-22 T 21-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RAF_RS01225 62edc07703e5bd6e4514389cf1ee106d 373 Gene3D G3DSA:2.60.260.20 215 256 4.6E-20 T 21-04-2016 RAF_RS01225 62edc07703e5bd6e4514389cf1ee106d 373 Gene3D G3DSA:2.60.260.20 258 337 2.7E-21 T 21-04-2016 RAF_RS01225 62edc07703e5bd6e4514389cf1ee106d 373 Gene3D G3DSA:2.60.260.20 116 145 4.6E-20 T 21-04-2016 RAF_RS01225 62edc07703e5bd6e4514389cf1ee106d 373 PANTHER PTHR24078 1 363 1.2E-138 T 21-04-2016 RAF_RS01225 62edc07703e5bd6e4514389cf1ee106d 373 ProSitePatterns PS00636 Nt-dnaJ domain signature. 45 64 - T 21-04-2016 IPR018253 DnaJ domain, conserved site RAF_RS01225 62edc07703e5bd6e4514389cf1ee106d 373 Pfam PF00684 DnaJ central domain 149 209 9.3E-13 T 21-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 RAF_RS01225 62edc07703e5bd6e4514389cf1ee106d 373 SUPERFAMILY SSF49493 120 154 7.72E-20 T 21-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RAF_RS01225 62edc07703e5bd6e4514389cf1ee106d 373 SUPERFAMILY SSF49493 215 259 7.72E-20 T 21-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RAF_RS01225 62edc07703e5bd6e4514389cf1ee106d 373 Pfam PF00226 DnaJ domain 4 65 4.9E-24 T 21-04-2016 IPR001623 DnaJ domain RAF_RS01225 62edc07703e5bd6e4514389cf1ee106d 373 PANTHER PTHR24078:SF231 1 363 1.2E-138 T 21-04-2016 RAF_RS01225 62edc07703e5bd6e4514389cf1ee106d 373 SMART SM00271 3 60 5.0E-27 T 21-04-2016 IPR001623 DnaJ domain RAF_RS00890 0730094e3a803aa418720f3cc635fc09 129 PIRSF PIRSF002133 1 124 2.0E-49 T 21-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00890 0730094e3a803aa418720f3cc635fc09 129 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 123 2.7E-61 T 21-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RAF_RS00890 0730094e3a803aa418720f3cc635fc09 129 PANTHER PTHR11652 1 116 1.0E-57 T 21-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00890 0730094e3a803aa418720f3cc635fc09 129 Pfam PF00164 Ribosomal protein S12/S23 9 122 3.5E-41 T 21-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00890 0730094e3a803aa418720f3cc635fc09 129 Gene3D G3DSA:2.40.50.140 1 123 2.5E-54 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS00890 0730094e3a803aa418720f3cc635fc09 129 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 21-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00890 0730094e3a803aa418720f3cc635fc09 129 SUPERFAMILY SSF50249 2 122 1.2E-45 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS00890 0730094e3a803aa418720f3cc635fc09 129 PRINTS PR01034 Ribosomal protein S12 signature 110 122 1.5E-43 T 21-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RAF_RS00890 0730094e3a803aa418720f3cc635fc09 129 PRINTS PR01034 Ribosomal protein S12 signature 27 42 1.5E-43 T 21-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RAF_RS00890 0730094e3a803aa418720f3cc635fc09 129 PRINTS PR01034 Ribosomal protein S12 signature 77 94 1.5E-43 T 21-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RAF_RS00890 0730094e3a803aa418720f3cc635fc09 129 PRINTS PR01034 Ribosomal protein S12 signature 94 110 1.5E-43 T 21-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RAF_RS00890 0730094e3a803aa418720f3cc635fc09 129 PRINTS PR01034 Ribosomal protein S12 signature 58 77 1.5E-43 T 21-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RAF_RS00890 0730094e3a803aa418720f3cc635fc09 129 PRINTS PR01034 Ribosomal protein S12 signature 42 57 1.5E-43 T 21-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RAF_RS00890 0730094e3a803aa418720f3cc635fc09 129 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 128 37.984 T 21-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 RAF_RS06245 0061f9773cd3a20a5af28ecdd0549833 878 PRINTS PR00415 Aconitase family signature 196 209 1.66E-38 T 21-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RAF_RS06245 0061f9773cd3a20a5af28ecdd0549833 878 PRINTS PR00415 Aconitase family signature 286 299 1.66E-38 T 21-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RAF_RS06245 0061f9773cd3a20a5af28ecdd0549833 878 PRINTS PR00415 Aconitase family signature 484 497 1.66E-38 T 21-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RAF_RS06245 0061f9773cd3a20a5af28ecdd0549833 878 PRINTS PR00415 Aconitase family signature 167 175 1.66E-38 T 21-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RAF_RS06245 0061f9773cd3a20a5af28ecdd0549833 878 PRINTS PR00415 Aconitase family signature 422 433 1.66E-38 T 21-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RAF_RS06245 0061f9773cd3a20a5af28ecdd0549833 878 PRINTS PR00415 Aconitase family signature 210 225 1.66E-38 T 21-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RAF_RS06245 0061f9773cd3a20a5af28ecdd0549833 878 PRINTS PR00415 Aconitase family signature 143 156 1.66E-38 T 21-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RAF_RS06245 0061f9773cd3a20a5af28ecdd0549833 878 PRINTS PR00415 Aconitase family signature 365 379 1.66E-38 T 21-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RAF_RS06245 0061f9773cd3a20a5af28ecdd0549833 878 PRINTS PR00415 Aconitase family signature 272 285 1.66E-38 T 21-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RAF_RS06245 0061f9773cd3a20a5af28ecdd0549833 878 PANTHER PTHR11670:SF1 407 697 0.0 T 21-04-2016 RAF_RS06245 0061f9773cd3a20a5af28ecdd0549833 878 PANTHER PTHR11670:SF1 736 878 0.0 T 21-04-2016 RAF_RS06245 0061f9773cd3a20a5af28ecdd0549833 878 PANTHER PTHR11670:SF1 7 386 0.0 T 21-04-2016 RAF_RS06245 0061f9773cd3a20a5af28ecdd0549833 878 Gene3D G3DSA:3.30.499.10 23 242 3.6E-74 T 21-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RAF_RS06245 0061f9773cd3a20a5af28ecdd0549833 878 ProSitePatterns PS01244 Aconitase family signature 2. 484 497 - T 21-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RAF_RS06245 0061f9773cd3a20a5af28ecdd0549833 878 Gene3D G3DSA:3.20.19.10 623 875 3.0E-77 T 21-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RAF_RS06245 0061f9773cd3a20a5af28ecdd0549833 878 ProSitePatterns PS00450 Aconitase family signature 1. 418 434 - T 21-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RAF_RS06245 0061f9773cd3a20a5af28ecdd0549833 878 PANTHER PTHR11670 407 697 0.0 T 21-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RAF_RS06245 0061f9773cd3a20a5af28ecdd0549833 878 PANTHER PTHR11670 736 878 0.0 T 21-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RAF_RS06245 0061f9773cd3a20a5af28ecdd0549833 878 PANTHER PTHR11670 7 386 0.0 T 21-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RAF_RS06245 0061f9773cd3a20a5af28ecdd0549833 878 Gene3D G3DSA:3.30.499.10 363 565 1.9E-61 T 21-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RAF_RS06245 0061f9773cd3a20a5af28ecdd0549833 878 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 22 875 0.0 T 21-04-2016 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3 RAF_RS06245 0061f9773cd3a20a5af28ecdd0549833 878 Pfam PF00330 Aconitase family (aconitate hydratase) 71 553 5.6E-184 T 21-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RAF_RS06245 0061f9773cd3a20a5af28ecdd0549833 878 SUPERFAMILY SSF52016 617 875 1.06E-80 T 21-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel RAF_RS06245 0061f9773cd3a20a5af28ecdd0549833 878 Pfam PF00694 Aconitase C-terminal domain 676 803 1.9E-44 T 21-04-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RAF_RS06245 0061f9773cd3a20a5af28ecdd0549833 878 SUPERFAMILY SSF53732 6 613 1.19E-214 T 21-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RAF_RS06245 0061f9773cd3a20a5af28ecdd0549833 878 Gene3D G3DSA:3.40.1060.10 243 360 3.3E-37 T 21-04-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 RAF_RS03255 57e0e7394973190584c0f329558e261a 192 PANTHER PTHR33231 1 186 8.1E-29 T 21-04-2016 RAF_RS03255 57e0e7394973190584c0f329558e261a 192 Pfam PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus 134 186 1.4E-15 T 21-04-2016 IPR032528 Sigma 54 modulation/S30EA ribosomal protein, C-terminal RAF_RS03255 57e0e7394973190584c0f329558e261a 192 SUPERFAMILY SSF69754 1 106 3.53E-26 T 21-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 RAF_RS03255 57e0e7394973190584c0f329558e261a 192 Gene3D G3DSA:3.30.160.100 1 99 2.1E-22 T 21-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 RAF_RS03255 57e0e7394973190584c0f329558e261a 192 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 103 6.2E-31 T 21-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 RAF_RS03255 57e0e7394973190584c0f329558e261a 192 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 96 5.1E-18 T 21-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 RAF_RS05205 b5ffda4dbeba9b6f7a566cb0c6713669 354 PANTHER PTHR12778 7 345 3.9E-22 T 21-04-2016 RAF_RS05205 b5ffda4dbeba9b6f7a566cb0c6713669 354 Pfam PF07690 Major Facilitator Superfamily 7 285 1.2E-14 T 21-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAF_RS05205 b5ffda4dbeba9b6f7a566cb0c6713669 354 SUPERFAMILY SSF103473 6 349 2.35E-26 T 21-04-2016 IPR020846 Major facilitator superfamily domain RAF_RS05205 b5ffda4dbeba9b6f7a566cb0c6713669 354 Gene3D G3DSA:1.20.1250.20 6 142 1.5E-7 T 21-04-2016 RAF_RS05205 b5ffda4dbeba9b6f7a566cb0c6713669 354 Gene3D G3DSA:1.20.1250.20 170 349 2.4E-15 T 21-04-2016 RAF_RS04570 3a44d1349baf1c11302957806a8235a4 128 SUPERFAMILY SSF82093 30 128 2.62E-28 T 21-04-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 RAF_RS04570 3a44d1349baf1c11302957806a8235a4 128 PANTHER PTHR34128 1 127 3.3E-33 T 21-04-2016 RAF_RS04570 3a44d1349baf1c11302957806a8235a4 128 PANTHER PTHR34128:SF1 1 127 3.3E-33 T 21-04-2016 RAF_RS04570 3a44d1349baf1c11302957806a8235a4 128 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 2 128 24.497 T 21-04-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 RAF_RS04570 3a44d1349baf1c11302957806a8235a4 128 Gene3D G3DSA:2.40.50.140 26 121 3.5E-27 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS04570 3a44d1349baf1c11302957806a8235a4 128 Pfam PF03100 CcmE 6 127 1.7E-33 T 21-04-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 RAF_RS00885 a353e0e3cf4a1ff337ca4afe4c5de9fb 218 SUPERFAMILY SSF161098 15 201 2.49E-40 T 21-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RAF_RS00885 a353e0e3cf4a1ff337ca4afe4c5de9fb 218 Gene3D G3DSA:1.10.3720.10 15 215 6.0E-44 T 21-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RAF_RS00885 a353e0e3cf4a1ff337ca4afe4c5de9fb 218 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 215 1.7E-25 T 21-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 RAF_RS00885 a353e0e3cf4a1ff337ca4afe4c5de9fb 218 PANTHER PTHR30614:SF15 14 218 2.8E-81 T 21-04-2016 RAF_RS00885 a353e0e3cf4a1ff337ca4afe4c5de9fb 218 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 110 8.4E-28 T 21-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 RAF_RS00885 a353e0e3cf4a1ff337ca4afe4c5de9fb 218 PANTHER PTHR30614 14 218 2.8E-81 T 21-04-2016 RAF_RS02410 12b4f60f218ce5f0f8f8d566bdcae6cb 305 Pfam PF01040 UbiA prenyltransferase family 36 285 1.4E-56 T 21-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 RAF_RS02410 12b4f60f218ce5f0f8f8d566bdcae6cb 305 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 19 300 19.358 T 21-04-2016 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 UniPathway: UPA00834 RAF_RS02410 12b4f60f218ce5f0f8f8d566bdcae6cb 305 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 73 95 - T 21-04-2016 IPR030470 UbiA prenyltransferase conserved site RAF_RS02410 12b4f60f218ce5f0f8f8d566bdcae6cb 305 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 21 296 4.5E-108 T 21-04-2016 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 UniPathway: UPA00834 RAF_RS02410 12b4f60f218ce5f0f8f8d566bdcae6cb 305 PANTHER PTHR11048:SF3 19 294 6.3E-74 T 21-04-2016 RAF_RS02410 12b4f60f218ce5f0f8f8d566bdcae6cb 305 PANTHER PTHR11048 19 294 6.3E-74 T 21-04-2016 RAF_RS05300 36a86f91c459668a28f652fa3682362b 478 SUPERFAMILY SSF56112 214 452 3.91E-33 T 21-04-2016 IPR011009 Protein kinase-like domain RAF_RS05300 36a86f91c459668a28f652fa3682362b 478 SUPERFAMILY SSF56112 148 180 3.91E-33 T 21-04-2016 IPR011009 Protein kinase-like domain RAF_RS05300 36a86f91c459668a28f652fa3682362b 478 PANTHER PTHR10566 138 460 6.4E-144 T 21-04-2016 RAF_RS05300 36a86f91c459668a28f652fa3682362b 478 PANTHER PTHR10566 46 115 6.4E-144 T 21-04-2016 RAF_RS05300 36a86f91c459668a28f652fa3682362b 478 PANTHER PTHR10566:SF79 138 460 6.4E-144 T 21-04-2016 RAF_RS05300 36a86f91c459668a28f652fa3682362b 478 PANTHER PTHR10566:SF79 46 115 6.4E-144 T 21-04-2016 RAF_RS05300 36a86f91c459668a28f652fa3682362b 478 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 5 462 1.0E-189 T 21-04-2016 IPR010232 Probable protein kinase UbiB GO:0006744 UniPathway: UPA00232 RAF_RS05300 36a86f91c459668a28f652fa3682362b 478 Pfam PF03109 ABC1 family 144 252 1.7E-34 T 21-04-2016 IPR004147 UbiB domain RAF_RS05300 36a86f91c459668a28f652fa3682362b 478 Gene3D G3DSA:3.90.1200.10 267 332 2.4E-9 T 21-04-2016 RAF_RS02260 825c0911e24eb213fad6d29a007ad0dd 446 PANTHER PTHR30372 3 413 1.3E-80 T 21-04-2016 RAF_RS02260 825c0911e24eb213fad6d29a007ad0dd 446 TIGRFAM TIGR03775 RPE3: rickettsial palindromic element RPE3 domain 379 421 2.0E-21 T 21-04-2016 IPR022437 Rickettsia palindromic element RPE3 RAF_RS02260 825c0911e24eb213fad6d29a007ad0dd 446 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 4 375 2.9E-67 T 21-04-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 RAF_RS02260 825c0911e24eb213fad6d29a007ad0dd 446 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 1 389 35.888 T 21-04-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 RAF_RS02260 825c0911e24eb213fad6d29a007ad0dd 446 Pfam PF02684 Lipid-A-disaccharide synthetase 4 379 1.4E-129 T 21-04-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 RAF_RS02260 825c0911e24eb213fad6d29a007ad0dd 446 SUPERFAMILY SSF53756 3 340 1.63E-28 T 21-04-2016 RAF_RS02260 825c0911e24eb213fad6d29a007ad0dd 446 Gene3D G3DSA:3.40.50.2000 172 298 1.8E-7 T 21-04-2016 RAF_RS01030 a5cd5bb5e26f8356a6b99732631f8cd7 519 SUPERFAMILY SSF103473 6 200 2.88E-55 T 21-04-2016 IPR020846 Major facilitator superfamily domain RAF_RS01030 a5cd5bb5e26f8356a6b99732631f8cd7 519 SUPERFAMILY SSF103473 255 427 2.88E-55 T 21-04-2016 IPR020846 Major facilitator superfamily domain RAF_RS01030 a5cd5bb5e26f8356a6b99732631f8cd7 519 PANTHER PTHR23501 12 502 9.7E-167 T 21-04-2016 RAF_RS01030 a5cd5bb5e26f8356a6b99732631f8cd7 519 PANTHER PTHR23501:SF51 12 502 9.7E-167 T 21-04-2016 RAF_RS01030 a5cd5bb5e26f8356a6b99732631f8cd7 519 Pfam PF07690 Major Facilitator Superfamily 23 417 8.9E-40 T 21-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAF_RS01030 a5cd5bb5e26f8356a6b99732631f8cd7 519 PRINTS PR01036 Tetracycline resistance protein TetB signature 408 427 3.1E-5 T 21-04-2016 RAF_RS01030 a5cd5bb5e26f8356a6b99732631f8cd7 519 PRINTS PR01036 Tetracycline resistance protein TetB signature 21 45 3.1E-5 T 21-04-2016 RAF_RS01030 a5cd5bb5e26f8356a6b99732631f8cd7 519 PRINTS PR01036 Tetracycline resistance protein TetB signature 142 166 3.1E-5 T 21-04-2016 RAF_RS01030 a5cd5bb5e26f8356a6b99732631f8cd7 519 PRINTS PR01036 Tetracycline resistance protein TetB signature 167 191 3.1E-5 T 21-04-2016 RAF_RS01030 a5cd5bb5e26f8356a6b99732631f8cd7 519 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 16 507 2.6E-183 T 21-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 RAF_RS01030 a5cd5bb5e26f8356a6b99732631f8cd7 519 Gene3D G3DSA:1.20.1250.20 19 191 2.6E-19 T 21-04-2016 RAF_RS01030 a5cd5bb5e26f8356a6b99732631f8cd7 519 Gene3D G3DSA:1.20.1250.20 273 433 2.0E-17 T 21-04-2016 RAF_RS01030 a5cd5bb5e26f8356a6b99732631f8cd7 519 Gene3D G3DSA:1.20.1250.20 483 500 2.0E-17 T 21-04-2016 RAF_RS01775 3c17743f067f243945f5aaa5308fbb18 690 SMART SM00316 39 129 3.8E-5 T 21-04-2016 IPR022967 RNA-binding domain, S1 RAF_RS01775 3c17743f067f243945f5aaa5308fbb18 690 Pfam PF00575 S1 RNA binding domain 38 78 1.0E-4 T 21-04-2016 IPR003029 S1 domain GO:0003676 RAF_RS01775 3c17743f067f243945f5aaa5308fbb18 690 SUPERFAMILY SSF50249 41 82 1.51E-15 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS01775 3c17743f067f243945f5aaa5308fbb18 690 SUPERFAMILY SSF50249 160 203 1.51E-15 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS01775 3c17743f067f243945f5aaa5308fbb18 690 Gene3D G3DSA:2.40.50.140 162 204 2.2E-32 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS01775 3c17743f067f243945f5aaa5308fbb18 690 Gene3D G3DSA:2.40.50.140 35 84 2.2E-32 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS01775 3c17743f067f243945f5aaa5308fbb18 690 PANTHER PTHR30001:SF1 1 675 1.5E-167 T 21-04-2016 RAF_RS01775 3c17743f067f243945f5aaa5308fbb18 690 PANTHER PTHR30001 1 675 1.5E-167 T 21-04-2016 RAF_RS01775 3c17743f067f243945f5aaa5308fbb18 690 Pfam PF10150 Ribonuclease E/G family 200 472 7.0E-90 T 21-04-2016 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 RAF_RS01775 3c17743f067f243945f5aaa5308fbb18 690 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 14 506 1.2E-174 T 21-04-2016 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 RAF_RS03435 14443b5d4cd0454faca801784f3d6ef4 134 Gene3D G3DSA:3.40.50.1010 2 134 2.6E-31 T 21-04-2016 IPR029060 PIN domain-like RAF_RS03435 14443b5d4cd0454faca801784f3d6ef4 134 SUPERFAMILY SSF88723 4 133 4.49E-18 T 21-04-2016 IPR029060 PIN domain-like RAF_RS03435 14443b5d4cd0454faca801784f3d6ef4 134 Pfam PF01850 PIN domain 5 127 1.1E-6 T 21-04-2016 IPR002716 PIN domain RAF_RS02470 50b3d279ae747816f0af51217b00fa98 167 SUPERFAMILY SSF52833 10 166 2.35E-56 T 21-04-2016 IPR012336 Thioredoxin-like fold RAF_RS02470 50b3d279ae747816f0af51217b00fa98 167 PANTHER PTHR10371 2 167 1.3E-94 T 21-04-2016 RAF_RS02470 50b3d279ae747816f0af51217b00fa98 167 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 122 140 - T 21-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 RAF_RS02470 50b3d279ae747816f0af51217b00fa98 167 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 18 165 5.8E-64 T 21-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 RAF_RS02470 50b3d279ae747816f0af51217b00fa98 167 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 19 165 3.9E-63 T 21-04-2016 RAF_RS02470 50b3d279ae747816f0af51217b00fa98 167 PIRSF PIRSF000216 1 167 2.3E-74 T 21-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 RAF_RS02470 50b3d279ae747816f0af51217b00fa98 167 PANTHER PTHR10371:SF3 2 167 1.3E-94 T 21-04-2016 RAF_RS02470 50b3d279ae747816f0af51217b00fa98 167 Gene3D G3DSA:3.40.30.10 85 163 6.4E-13 T 21-04-2016 IPR012336 Thioredoxin-like fold RAF_RS00085 8458ebbd3ae01173088303e8536ffa3f 436 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 235 285 2.7E-9 T 21-04-2016 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain RAF_RS00085 8458ebbd3ae01173088303e8536ffa3f 436 SUPERFAMILY SSF81891 199 434 6.8E-43 T 21-04-2016 RAF_RS00085 8458ebbd3ae01173088303e8536ffa3f 436 Gene3D G3DSA:3.30.460.10 9 42 2.6E-45 T 21-04-2016 RAF_RS00085 8458ebbd3ae01173088303e8536ffa3f 436 Gene3D G3DSA:3.30.460.10 92 196 2.6E-45 T 21-04-2016 RAF_RS00085 8458ebbd3ae01173088303e8536ffa3f 436 SUPERFAMILY SSF81301 90 196 7.85E-29 T 21-04-2016 RAF_RS00085 8458ebbd3ae01173088303e8536ffa3f 436 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 41 88 3.9E-24 T 21-04-2016 IPR005728 Rickettsial palindromic element RAF_RS00085 8458ebbd3ae01173088303e8536ffa3f 436 Gene3D G3DSA:1.10.3090.10 199 405 1.6E-36 T 21-04-2016 RAF_RS00085 8458ebbd3ae01173088303e8536ffa3f 436 PANTHER PTHR13734 15 40 3.2E-55 T 21-04-2016 RAF_RS00085 8458ebbd3ae01173088303e8536ffa3f 436 PANTHER PTHR13734 90 319 3.2E-55 T 21-04-2016 RAF_RS00085 8458ebbd3ae01173088303e8536ffa3f 436 Pfam PF01743 Poly A polymerase head domain 89 199 1.9E-25 T 21-04-2016 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 RAF_RS00265 6c4c2f2231459869ce4dbd02c5c354c0 192 ProDom PD531162 RC0050 93 192 6.0E-53 T 21-04-2016 RAF_RS03005 7f63ed165960d895799df597b96344ab 379 SUPERFAMILY SSF55979 251 379 2.75E-26 T 21-04-2016 RAF_RS03005 7f63ed165960d895799df597b96344ab 379 SMART SM00480 18 375 9.5E-138 T 21-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAF_RS03005 7f63ed165960d895799df597b96344ab 379 PIRSF PIRSF000804 2 379 1.9E-90 T 21-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAF_RS03005 7f63ed165960d895799df597b96344ab 379 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 2 378 4.3E-78 T 21-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAF_RS03005 7f63ed165960d895799df597b96344ab 379 Gene3D G3DSA:3.10.150.10 3 118 1.6E-17 T 21-04-2016 RAF_RS03005 7f63ed165960d895799df597b96344ab 379 PANTHER PTHR30478 3 379 5.2E-88 T 21-04-2016 RAF_RS03005 7f63ed165960d895799df597b96344ab 379 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 251 377 2.7E-23 T 21-04-2016 IPR022635 DNA polymerase III, beta chain, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAF_RS03005 7f63ed165960d895799df597b96344ab 379 SUPERFAMILY SSF55979 126 248 6.28E-23 T 21-04-2016 RAF_RS03005 7f63ed165960d895799df597b96344ab 379 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 2 120 8.7E-22 T 21-04-2016 IPR022634 DNA polymerase III, beta chain, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAF_RS03005 7f63ed165960d895799df597b96344ab 379 Gene3D G3DSA:3.10.150.10 252 379 6.1E-37 T 21-04-2016 RAF_RS03005 7f63ed165960d895799df597b96344ab 379 Pfam PF02767 DNA polymerase III beta subunit, central domain 130 247 1.1E-25 T 21-04-2016 IPR022637 DNA polymerase III, beta chain, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RAF_RS03005 7f63ed165960d895799df597b96344ab 379 Gene3D G3DSA:3.10.150.10 119 249 9.2E-30 T 21-04-2016 RAF_RS03005 7f63ed165960d895799df597b96344ab 379 SUPERFAMILY SSF55979 3 117 5.11E-20 T 21-04-2016 RAF_RS01990 ad126cff27e07985048cbba35d313ea0 433 Pfam PF00361 Proton-conducting membrane transporter 137 405 8.4E-28 T 21-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RAF_RS01990 ad126cff27e07985048cbba35d313ea0 433 PANTHER PTHR22773 1 431 7.8E-50 T 21-04-2016 RAF_RS01990 ad126cff27e07985048cbba35d313ea0 433 PANTHER PTHR22773:SF49 1 431 7.8E-50 T 21-04-2016 RAF_RS05745 75e1fe0b2ee2b38fcab7317c457bee62 130 Pfam PF01443 Viral (Superfamily 1) RNA helicase 39 92 1.4E-4 T 21-04-2016 IPR027351 (+) RNA virus helicase core domain GO:0005524 RAF_RS05745 75e1fe0b2ee2b38fcab7317c457bee62 130 PANTHER PTHR10887 12 80 1.2E-14 T 21-04-2016 RAF_RS05745 75e1fe0b2ee2b38fcab7317c457bee62 130 Gene3D G3DSA:3.40.50.300 21 80 3.5E-6 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05745 75e1fe0b2ee2b38fcab7317c457bee62 130 SUPERFAMILY SSF52540 38 99 9.84E-7 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05745 75e1fe0b2ee2b38fcab7317c457bee62 130 PANTHER PTHR10887:SF350 12 80 1.2E-14 T 21-04-2016 RAF_RS01805 b0df1e225ea6a365975cf4b41891d062 326 SUPERFAMILY SSF52518 3 201 1.03E-69 T 21-04-2016 IPR029061 Thiamin diphosphate-binding fold RAF_RS01805 b0df1e225ea6a365975cf4b41891d062 326 SUPERFAMILY SSF52922 188 322 1.31E-39 T 21-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RAF_RS01805 b0df1e225ea6a365975cf4b41891d062 326 Pfam PF02779 Transketolase, pyrimidine binding domain 2 178 5.9E-51 T 21-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RAF_RS01805 b0df1e225ea6a365975cf4b41891d062 326 Gene3D G3DSA:3.40.50.920 195 320 2.1E-44 T 21-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 RAF_RS01805 b0df1e225ea6a365975cf4b41891d062 326 SMART SM00861 3 178 2.9E-60 T 21-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain RAF_RS01805 b0df1e225ea6a365975cf4b41891d062 326 PANTHER PTHR11624 2 324 2.2E-167 T 21-04-2016 IPR033247 Transketolase family RAF_RS01805 b0df1e225ea6a365975cf4b41891d062 326 Gene3D G3DSA:3.40.50.970 2 194 1.3E-94 T 21-04-2016 IPR029061 Thiamin diphosphate-binding fold RAF_RS01805 b0df1e225ea6a365975cf4b41891d062 326 Pfam PF02780 Transketolase, C-terminal domain 192 313 3.6E-38 T 21-04-2016 IPR033248 Transketolase, C-terminal domain RAF_RS06065 c2ac1fcddd37047afe9ac5d972355db3 362 PANTHER PTHR33529:SF1 1 361 1.7E-30 T 21-04-2016 RAF_RS06065 c2ac1fcddd37047afe9ac5d972355db3 362 Pfam PF03739 Predicted permease YjgP/YjgQ family 9 357 9.7E-47 T 21-04-2016 IPR005495 Permease LptG/LptF-related GO:0016021 RAF_RS06065 c2ac1fcddd37047afe9ac5d972355db3 362 PANTHER PTHR33529 1 361 1.7E-30 T 21-04-2016 RAF_RS05670 46e7c33d45aacae789140234599ec2d7 822 Gene3D G3DSA:3.40.50.300 427 559 1.3E-36 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05670 46e7c33d45aacae789140234599ec2d7 822 Gene3D G3DSA:3.40.50.300 702 816 1.3E-36 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05670 46e7c33d45aacae789140234599ec2d7 822 Gene3D G3DSA:1.10.486.10 571 692 5.1E-8 T 21-04-2016 RAF_RS05670 46e7c33d45aacae789140234599ec2d7 822 Gene3D G3DSA:3.40.50.300 300 409 7.3E-65 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05670 46e7c33d45aacae789140234599ec2d7 822 Gene3D G3DSA:3.40.50.300 114 176 7.3E-65 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05670 46e7c33d45aacae789140234599ec2d7 822 Gene3D G3DSA:3.40.50.300 8 63 7.3E-65 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05670 46e7c33d45aacae789140234599ec2d7 822 SUPERFAMILY SSF52540 11 67 1.77E-103 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05670 46e7c33d45aacae789140234599ec2d7 822 SUPERFAMILY SSF52540 775 801 1.77E-103 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05670 46e7c33d45aacae789140234599ec2d7 822 SUPERFAMILY SSF52540 207 235 1.77E-103 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05670 46e7c33d45aacae789140234599ec2d7 822 SUPERFAMILY SSF52540 106 159 1.77E-103 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05670 46e7c33d45aacae789140234599ec2d7 822 SUPERFAMILY SSF52540 290 748 1.77E-103 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05670 46e7c33d45aacae789140234599ec2d7 822 Pfam PF13361 UvrD-like helicase C-terminal domain 705 796 1.0E-16 T 21-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RAF_RS05670 46e7c33d45aacae789140234599ec2d7 822 PANTHER PTHR11070 774 798 6.1E-83 T 21-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RAF_RS05670 46e7c33d45aacae789140234599ec2d7 822 PANTHER PTHR11070 105 204 6.1E-83 T 21-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RAF_RS05670 46e7c33d45aacae789140234599ec2d7 822 PANTHER PTHR11070 265 477 6.1E-83 T 21-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RAF_RS05670 46e7c33d45aacae789140234599ec2d7 822 PANTHER PTHR11070 15 75 6.1E-83 T 21-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RAF_RS05670 46e7c33d45aacae789140234599ec2d7 822 PANTHER PTHR11070 497 749 6.1E-83 T 21-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 RAF_RS05670 46e7c33d45aacae789140234599ec2d7 822 Pfam PF00580 UvrD/REP helicase N-terminal domain 3 407 2.9E-70 T 21-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 RAF_RS05105 c77272e0f8d8469dde4adf251041a6b2 217 Gene3D G3DSA:3.30.1140.32 113 209 5.6E-43 T 21-04-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 RAF_RS05105 c77272e0f8d8469dde4adf251041a6b2 217 Pfam PF07650 KH domain 39 111 3.3E-16 T 21-04-2016 IPR004044 K Homology domain, type 2 GO:0003723 RAF_RS05105 c77272e0f8d8469dde4adf251041a6b2 217 ProSitePatterns PS00548 Ribosomal protein S3 signature. 166 200 - T 21-04-2016 IPR018280 Ribosomal protein S3, conserved site RAF_RS05105 c77272e0f8d8469dde4adf251041a6b2 217 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 213 4.6E-91 T 21-04-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 RAF_RS05105 c77272e0f8d8469dde4adf251041a6b2 217 SUPERFAMILY SSF54821 111 209 2.75E-38 T 21-04-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 RAF_RS05105 c77272e0f8d8469dde4adf251041a6b2 217 SUPERFAMILY SSF54814 2 109 1.83E-24 T 21-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 RAF_RS05105 c77272e0f8d8469dde4adf251041a6b2 217 Pfam PF00189 Ribosomal protein S3, C-terminal domain 123 205 6.1E-38 T 21-04-2016 RAF_RS05105 c77272e0f8d8469dde4adf251041a6b2 217 Gene3D G3DSA:3.30.300.20 20 110 1.6E-23 T 21-04-2016 IPR015946 K homology domain-like, alpha/beta RAF_RS05105 c77272e0f8d8469dde4adf251041a6b2 217 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 209 34.561 T 21-04-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 RAF_RS05105 c77272e0f8d8469dde4adf251041a6b2 217 PANTHER PTHR11760:SF19 2 209 5.1E-99 T 21-04-2016 RAF_RS05105 c77272e0f8d8469dde4adf251041a6b2 217 SMART SM00322 62 128 3.5E-4 T 21-04-2016 IPR004087 K Homology domain GO:0003676 RAF_RS05105 c77272e0f8d8469dde4adf251041a6b2 217 PANTHER PTHR11760 2 209 5.1E-99 T 21-04-2016 RAF_RS01275 cbf3d890fe2495cf7296d887049e8abc 212 TIGRFAM TIGR02098 MJ0042_CXXC: MJ0042 family finger-like domain 1 37 4.7E-20 T 21-04-2016 IPR011723 Zinc finger/thioredoxin putative RAF_RS01275 cbf3d890fe2495cf7296d887049e8abc 212 Pfam PF13717 zinc-ribbon domain 1 35 1.7E-14 T 21-04-2016 RAF_RS01425 050cca08ac219ec09476c44e4af1899f 71 TIGRFAM TIGR03412 iscX_yfhJ: FeS assembly protein IscX 3 62 3.7E-11 T 21-04-2016 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 RAF_RS01425 050cca08ac219ec09476c44e4af1899f 71 SUPERFAMILY SSF140319 1 62 4.84E-14 T 21-04-2016 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 RAF_RS01425 050cca08ac219ec09476c44e4af1899f 71 Gene3D G3DSA:1.10.10.600 1 63 1.2E-17 T 21-04-2016 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 RAF_RS01425 050cca08ac219ec09476c44e4af1899f 71 Pfam PF04384 Iron-sulphur cluster assembly 1 62 8.3E-16 T 21-04-2016 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 RAF_RS04100 de0b90c2d1164ee9bd58579c484b889b 494 SUPERFAMILY SSF48024 24 136 7.06E-30 T 21-04-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 RAF_RS04100 de0b90c2d1164ee9bd58579c484b889b 494 SUPERFAMILY SSF52540 203 477 5.42E-46 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04100 de0b90c2d1164ee9bd58579c484b889b 494 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 26 487 2.5E-153 T 21-04-2016 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 RAF_RS04100 de0b90c2d1164ee9bd58579c484b889b 494 Pfam PF00772 DnaB-like helicase N terminal domain 26 127 7.6E-26 T 21-04-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 RAF_RS04100 de0b90c2d1164ee9bd58579c484b889b 494 Pfam PF03796 DnaB-like helicase C terminal domain 204 485 9.9E-101 T 21-04-2016 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 RAF_RS04100 de0b90c2d1164ee9bd58579c484b889b 494 Gene3D G3DSA:1.10.860.10 26 127 8.6E-25 T 21-04-2016 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal RAF_RS04100 de0b90c2d1164ee9bd58579c484b889b 494 Gene3D G3DSA:3.40.50.300 191 487 1.2E-90 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04100 de0b90c2d1164ee9bd58579c484b889b 494 PANTHER PTHR30153 448 494 7.9E-161 T 21-04-2016 RAF_RS04100 de0b90c2d1164ee9bd58579c484b889b 494 PANTHER PTHR30153 10 430 7.9E-161 T 21-04-2016 RAF_RS03740 8727ffcf6c45eec789a6c3704b832767 131 TIGRFAM TIGR01999 iscU: FeS cluster assembly scaffold IscU 3 126 8.1E-72 T 21-04-2016 IPR011339 ISC system FeS cluster assembly, IscU scaffold GO:0005506|GO:0016226|GO:0051536 RAF_RS03740 8727ffcf6c45eec789a6c3704b832767 131 PANTHER PTHR10093 1 130 5.4E-92 T 21-04-2016 RAF_RS03740 8727ffcf6c45eec789a6c3704b832767 131 Pfam PF01592 NifU-like N terminal domain 2 126 1.8E-57 T 21-04-2016 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 RAF_RS03740 8727ffcf6c45eec789a6c3704b832767 131 SUPERFAMILY SSF82649 1 125 3.14E-49 T 21-04-2016 RAF_RS03740 8727ffcf6c45eec789a6c3704b832767 131 Gene3D G3DSA:3.90.1010.10 2 128 3.1E-57 T 21-04-2016 RAF_RS03135 92d2ccc2445a7ef9b8c8e49a784f4a3a 173 Pfam PF06271 RDD family 7 167 8.6E-35 T 21-04-2016 IPR010432 RDD RAF_RS03135 92d2ccc2445a7ef9b8c8e49a784f4a3a 173 PANTHER PTHR36115 85 172 3.3E-12 T 21-04-2016 RAF_RS03135 92d2ccc2445a7ef9b8c8e49a784f4a3a 173 PANTHER PTHR36115:SF3 85 172 3.3E-12 T 21-04-2016 RAF_RS02445 5c65b4c71e89ba5483d6dfa55252d5fa 80 SUPERFAMILY SSF116842 9 70 4.32E-18 T 21-04-2016 RAF_RS02445 5c65b4c71e89ba5483d6dfa55252d5fa 80 PIRSF PIRSF006488 1 78 8.8E-23 T 21-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RAF_RS02445 5c65b4c71e89ba5483d6dfa55252d5fa 80 PANTHER PTHR34137 1 79 1.0E-14 T 21-04-2016 RAF_RS02445 5c65b4c71e89ba5483d6dfa55252d5fa 80 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 12 72 15.16 T 21-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RAF_RS02445 5c65b4c71e89ba5483d6dfa55252d5fa 80 Pfam PF02609 Exonuclease VII small subunit 13 64 3.3E-17 T 21-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RAF_RS02445 5c65b4c71e89ba5483d6dfa55252d5fa 80 Gene3D G3DSA:1.10.287.1040 9 73 5.1E-21 T 21-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RAF_RS02445 5c65b4c71e89ba5483d6dfa55252d5fa 80 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 1 53 7.0E-21 T 21-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RAF_RS02445 5c65b4c71e89ba5483d6dfa55252d5fa 80 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 12 66 2.9E-21 T 21-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RAF_RS01860 853cfa8ee13ee6db93483990fdd8945d 398 SUPERFAMILY SSF81342 15 276 5.81E-113 T 21-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 RAF_RS01860 853cfa8ee13ee6db93483990fdd8945d 398 Pfam PF00033 Cytochrome b/b6/petB 32 218 2.4E-80 T 21-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 RAF_RS01860 853cfa8ee13ee6db93483990fdd8945d 398 PANTHER PTHR19271:SF5 11 393 5.4E-237 T 21-04-2016 RAF_RS01860 853cfa8ee13ee6db93483990fdd8945d 398 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 274 375 6.5E-44 T 21-04-2016 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 RAF_RS01860 853cfa8ee13ee6db93483990fdd8945d 398 Gene3D G3DSA:1.20.810.10 15 392 1.4E-178 T 21-04-2016 IPR027387 Cytochrome b/b6-like domain RAF_RS01860 853cfa8ee13ee6db93483990fdd8945d 398 PANTHER PTHR19271 11 393 5.4E-237 T 21-04-2016 RAF_RS01860 853cfa8ee13ee6db93483990fdd8945d 398 PIRSF PIRSF038885 6 398 1.2E-201 T 21-04-2016 IPR030689 Cytochrome b GO:0006122|GO:0008121|GO:0009055|GO:0045275 RAF_RS01860 853cfa8ee13ee6db93483990fdd8945d 398 SUPERFAMILY SSF81648 277 394 6.1E-44 T 21-04-2016 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 RAF_RS00060 29349106559f89f8303bee295faa11f7 331 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 4 322 1.2E-131 T 21-04-2016 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 RAF_RS00060 29349106559f89f8303bee295faa11f7 331 Pfam PF01207 Dihydrouridine synthase (Dus) 14 316 3.5E-106 T 21-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RAF_RS00060 29349106559f89f8303bee295faa11f7 331 PIRSF PIRSF006621 1 330 2.9E-117 T 21-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RAF_RS00060 29349106559f89f8303bee295faa11f7 331 Gene3D G3DSA:3.20.20.70 8 248 1.4E-78 T 21-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RAF_RS00060 29349106559f89f8303bee295faa11f7 331 Gene3D G3DSA:1.10.1200.80 254 325 1.7E-20 T 21-04-2016 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 RAF_RS00060 29349106559f89f8303bee295faa11f7 331 SUPERFAMILY SSF51395 13 320 2.97E-86 T 21-04-2016 RAF_RS00060 29349106559f89f8303bee295faa11f7 331 PANTHER PTHR11082:SF25 2 324 2.3E-123 T 21-04-2016 RAF_RS00060 29349106559f89f8303bee295faa11f7 331 PANTHER PTHR11082 2 324 2.3E-123 T 21-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RAF_RS06615 84df7ade6736d2a5a11badc2abc7d0db 68 SUPERFAMILY SSF53955 1 64 8.7E-20 T 21-04-2016 IPR023346 Lysozyme-like domain RAF_RS06615 84df7ade6736d2a5a11badc2abc7d0db 68 Gene3D G3DSA:1.10.530.40 1 64 8.6E-20 T 21-04-2016 IPR023347 Lysozyme domain GO:0003796 RAF_RS06615 84df7ade6736d2a5a11badc2abc7d0db 68 PANTHER PTHR38107:SF2 1 64 4.4E-18 T 21-04-2016 RAF_RS06615 84df7ade6736d2a5a11badc2abc7d0db 68 PANTHER PTHR38107 1 64 4.4E-18 T 21-04-2016 RAF_RS06615 84df7ade6736d2a5a11badc2abc7d0db 68 Pfam PF00959 Phage lysozyme 3 64 3.4E-11 T 21-04-2016 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 RAF_RS02380 869620ad6ce5f6e805b14e0f7af646ae 331 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 30 328 1.5E-39 T 21-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 RAF_RS02380 869620ad6ce5f6e805b14e0f7af646ae 331 Pfam PF13533 Biotin-lipoyl like 64 95 6.1E-6 T 21-04-2016 RAF_RS02380 869620ad6ce5f6e805b14e0f7af646ae 331 Gene3D G3DSA:2.40.50.100 149 181 4.2E-10 T 21-04-2016 RAF_RS02380 869620ad6ce5f6e805b14e0f7af646ae 331 Gene3D G3DSA:2.40.50.100 23 89 6.7E-4 T 21-04-2016 RAF_RS02380 869620ad6ce5f6e805b14e0f7af646ae 331 PANTHER PTHR30469 5 331 9.5E-36 T 21-04-2016 RAF_RS02380 869620ad6ce5f6e805b14e0f7af646ae 331 SUPERFAMILY SSF111369 46 177 7.32E-18 T 21-04-2016 RAF_RS00730 51bfddd1b25cdad688f4ba42c7caade4 95 Pfam PF05101 Type IV secretory pathway, VirB3-like protein 8 89 8.5E-25 T 21-04-2016 IPR007792 Type IV secretion system, VirB3 / TrbD / AvhB RAF_RS03840 9bbb6b1dbddc344147e5f4ba685b0c7a 239 Gene3D G3DSA:3.40.50.1820 4 211 2.0E-53 T 21-04-2016 IPR029058 Alpha/Beta hydrolase fold RAF_RS03840 9bbb6b1dbddc344147e5f4ba685b0c7a 239 PANTHER PTHR12277:SF79 27 211 2.3E-52 T 21-04-2016 RAF_RS03840 9bbb6b1dbddc344147e5f4ba685b0c7a 239 SUPERFAMILY SSF53474 4 211 5.67E-47 T 21-04-2016 IPR029058 Alpha/Beta hydrolase fold RAF_RS03840 9bbb6b1dbddc344147e5f4ba685b0c7a 239 PANTHER PTHR12277 27 211 2.3E-52 T 21-04-2016 RAF_RS03840 9bbb6b1dbddc344147e5f4ba685b0c7a 239 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 26 139 1.2E-10 T 21-04-2016 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 RAF_RS05915 c08a4aa67cfa7db7250086f46834db8d 86 SUPERFAMILY SSF110324 2 79 3.14E-33 T 21-04-2016 RAF_RS05915 c08a4aa67cfa7db7250086f46834db8d 86 PRINTS PR00063 Ribosomal protein L27 signature 54 78 4.9E-36 T 21-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05915 c08a4aa67cfa7db7250086f46834db8d 86 PRINTS PR00063 Ribosomal protein L27 signature 29 53 4.9E-36 T 21-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05915 c08a4aa67cfa7db7250086f46834db8d 86 PRINTS PR00063 Ribosomal protein L27 signature 4 28 4.9E-36 T 21-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05915 c08a4aa67cfa7db7250086f46834db8d 86 PANTHER PTHR15893 1 80 8.6E-45 T 21-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05915 c08a4aa67cfa7db7250086f46834db8d 86 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 83 26.754 T 21-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05915 c08a4aa67cfa7db7250086f46834db8d 86 Pfam PF01016 Ribosomal L27 protein 2 80 1.5E-37 T 21-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05915 c08a4aa67cfa7db7250086f46834db8d 86 Gene3D G3DSA:2.40.50.100 20 79 5.5E-31 T 21-04-2016 RAF_RS05915 c08a4aa67cfa7db7250086f46834db8d 86 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 21-04-2016 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05915 c08a4aa67cfa7db7250086f46834db8d 86 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 69 5.0E-18 T 21-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05915 c08a4aa67cfa7db7250086f46834db8d 86 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 80 2.7E-36 T 21-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00650 a4f75af1eccdb4a0268ca18267c26421 55 SUPERFAMILY SSF53271 4 52 1.01E-16 T 21-04-2016 IPR029057 Phosphoribosyltransferase-like RAF_RS00650 a4f75af1eccdb4a0268ca18267c26421 55 PANTHER PTHR10210 8 51 2.0E-16 T 21-04-2016 RAF_RS00650 a4f75af1eccdb4a0268ca18267c26421 55 Gene3D G3DSA:3.40.50.2020 3 52 1.7E-17 T 21-04-2016 IPR029057 Phosphoribosyltransferase-like RAF_RS00650 a4f75af1eccdb4a0268ca18267c26421 55 Pfam PF00156 Phosphoribosyl transferase domain 4 42 7.8E-10 T 21-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 RAF_RS05845 87a3bd1ec5fa04412b62bddd4affdf6c 210 PIRSF PIRSF001435 1 209 5.3E-50 T 21-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 RAF_RS05845 87a3bd1ec5fa04412b62bddd4affdf6c 210 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 21-04-2016 IPR004036 Endonuclease III-like, conserved site-2 Reactome: REACT_216 RAF_RS05845 87a3bd1ec5fa04412b62bddd4affdf6c 210 PANTHER PTHR10359 1 206 8.6E-82 T 21-04-2016 RAF_RS05845 87a3bd1ec5fa04412b62bddd4affdf6c 210 Hamap MF_00942 Endonuclease III [nth]. 1 209 37.384 T 21-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 RAF_RS05845 87a3bd1ec5fa04412b62bddd4affdf6c 210 TIGRFAM TIGR01083 nth: endonuclease III 4 194 1.7E-87 T 21-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 RAF_RS05845 87a3bd1ec5fa04412b62bddd4affdf6c 210 Gene3D G3DSA:1.10.1670.10 123 206 4.1E-35 T 21-04-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal RAF_RS05845 87a3bd1ec5fa04412b62bddd4affdf6c 210 Gene3D G3DSA:1.10.340.30 25 122 1.4E-33 T 21-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RAF_RS05845 87a3bd1ec5fa04412b62bddd4affdf6c 210 PANTHER PTHR10359:SF18 1 206 8.6E-82 T 21-04-2016 RAF_RS05845 87a3bd1ec5fa04412b62bddd4affdf6c 210 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 187 203 8.9E-6 T 21-04-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: REACT_216 RAF_RS05845 87a3bd1ec5fa04412b62bddd4affdf6c 210 SUPERFAMILY SSF48150 4 208 1.05E-70 T 21-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 RAF_RS05845 87a3bd1ec5fa04412b62bddd4affdf6c 210 SMART SM00478 38 185 2.7E-59 T 21-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 RAF_RS05845 87a3bd1ec5fa04412b62bddd4affdf6c 210 SMART SM00525 186 206 7.9E-7 T 21-04-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: REACT_216 RAF_RS05845 87a3bd1ec5fa04412b62bddd4affdf6c 210 Pfam PF00633 Helix-hairpin-helix motif 100 127 2.6E-6 T 21-04-2016 IPR000445 Helix-hairpin-helix motif GO:0003677 RAF_RS05845 87a3bd1ec5fa04412b62bddd4affdf6c 210 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 34 165 4.2E-23 T 21-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 RAF_RS00955 19bb7188b9ef3fcb232c6caaa2476576 500 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 184 492 2.8E-117 T 21-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RAF_RS00955 19bb7188b9ef3fcb232c6caaa2476576 500 PRINTS PR00481 Cytosol aminopeptidase signature 370 385 5.4E-53 T 21-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RAF_RS00955 19bb7188b9ef3fcb232c6caaa2476576 500 PRINTS PR00481 Cytosol aminopeptidase signature 319 340 5.4E-53 T 21-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RAF_RS00955 19bb7188b9ef3fcb232c6caaa2476576 500 PRINTS PR00481 Cytosol aminopeptidase signature 282 303 5.4E-53 T 21-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RAF_RS00955 19bb7188b9ef3fcb232c6caaa2476576 500 PRINTS PR00481 Cytosol aminopeptidase signature 260 277 5.4E-53 T 21-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RAF_RS00955 19bb7188b9ef3fcb232c6caaa2476576 500 PRINTS PR00481 Cytosol aminopeptidase signature 341 361 5.4E-53 T 21-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RAF_RS00955 19bb7188b9ef3fcb232c6caaa2476576 500 PANTHER PTHR11963:SF13 23 500 2.7E-178 T 21-04-2016 RAF_RS00955 19bb7188b9ef3fcb232c6caaa2476576 500 Gene3D G3DSA:3.40.630.10 175 498 1.0E-131 T 21-04-2016 RAF_RS00955 19bb7188b9ef3fcb232c6caaa2476576 500 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 2 500 36.752 T 21-04-2016 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 RAF_RS00955 19bb7188b9ef3fcb232c6caaa2476576 500 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 345 352 - T 21-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RAF_RS00955 19bb7188b9ef3fcb232c6caaa2476576 500 Gene3D G3DSA:3.40.220.10 10 155 3.3E-17 T 21-04-2016 RAF_RS00955 19bb7188b9ef3fcb232c6caaa2476576 500 PANTHER PTHR11963 23 500 2.7E-178 T 21-04-2016 RAF_RS00955 19bb7188b9ef3fcb232c6caaa2476576 500 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 18 146 1.6E-26 T 21-04-2016 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RAF_RS00955 19bb7188b9ef3fcb232c6caaa2476576 500 SUPERFAMILY SSF53187 178 498 2.93E-119 T 21-04-2016 RAF_RS00955 19bb7188b9ef3fcb232c6caaa2476576 500 SUPERFAMILY SSF52949 4 182 8.83E-27 T 21-04-2016 RAF_RS05195 3976177c98fa328cc534a872cb8cda5a 68 PANTHER PTHR35890:SF4 10 66 1.0E-15 T 21-04-2016 RAF_RS05195 3976177c98fa328cc534a872cb8cda5a 68 Pfam PF03974 Ecotin 1 60 7.7E-15 T 21-04-2016 IPR023189 Proteinase inhibitor I11, ecotin domain RAF_RS05195 3976177c98fa328cc534a872cb8cda5a 68 SUPERFAMILY SSF49772 1 67 2.88E-21 T 21-04-2016 IPR023189 Proteinase inhibitor I11, ecotin domain RAF_RS05195 3976177c98fa328cc534a872cb8cda5a 68 PANTHER PTHR35890 10 66 1.0E-15 T 21-04-2016 RAF_RS05195 3976177c98fa328cc534a872cb8cda5a 68 Gene3D G3DSA:2.60.40.550 1 67 1.3E-21 T 21-04-2016 IPR023189 Proteinase inhibitor I11, ecotin domain RAF_RS06155 36c3f9ac27b705ba7e2bd37d66a0e0a1 251 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 7 228 5.4E-58 T 21-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RAF_RS06155 36c3f9ac27b705ba7e2bd37d66a0e0a1 251 Pfam PF00902 Sec-independent protein translocase protein (TatC) 8 223 4.8E-59 T 21-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RAF_RS06155 36c3f9ac27b705ba7e2bd37d66a0e0a1 251 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 101 127 1.3E-35 T 21-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RAF_RS06155 36c3f9ac27b705ba7e2bd37d66a0e0a1 251 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 5 32 1.3E-35 T 21-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RAF_RS06155 36c3f9ac27b705ba7e2bd37d66a0e0a1 251 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 156 184 1.3E-35 T 21-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RAF_RS06155 36c3f9ac27b705ba7e2bd37d66a0e0a1 251 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 83 101 1.3E-35 T 21-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RAF_RS06155 36c3f9ac27b705ba7e2bd37d66a0e0a1 251 PANTHER PTHR30371 5 240 3.5E-71 T 21-04-2016 RAF_RS06155 36c3f9ac27b705ba7e2bd37d66a0e0a1 251 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 2 242 16.816 T 21-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RAF_RS06155 36c3f9ac27b705ba7e2bd37d66a0e0a1 251 ProSitePatterns PS01218 TatC family signature. 156 175 - T 21-04-2016 IPR019820 Sec-independent periplasmic protein translocase, conserved site RAF_RS06155 36c3f9ac27b705ba7e2bd37d66a0e0a1 251 PANTHER PTHR30371:SF0 5 240 3.5E-71 T 21-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RAF_RS05545 cb25a01d757330c29a309c36f511b1d8 98 Pfam PF13411 MerR HTH family regulatory protein 11 58 5.5E-6 T 21-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RAF_RS05545 cb25a01d757330c29a309c36f511b1d8 98 SUPERFAMILY SSF46955 9 76 3.66E-5 T 21-04-2016 IPR009061 Putative DNA-binding domain RAF_RS05545 cb25a01d757330c29a309c36f511b1d8 98 Gene3D G3DSA:1.10.1660.10 8 58 4.1E-4 T 21-04-2016 RAF_RS03725 4e368356d65a3dc710f3f1d6eb0321dc 139 Pfam PF02082 Transcriptional regulator 1 83 6.5E-24 T 21-04-2016 IPR000944 Transcription regulator Rrf2-type RAF_RS03725 4e368356d65a3dc710f3f1d6eb0321dc 139 PANTHER PTHR33221:SF1 2 131 5.1E-38 T 21-04-2016 RAF_RS03725 4e368356d65a3dc710f3f1d6eb0321dc 139 Gene3D G3DSA:1.10.10.10 1 134 6.7E-28 T 21-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RAF_RS03725 4e368356d65a3dc710f3f1d6eb0321dc 139 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 132 4.2E-36 T 21-04-2016 IPR000944 Transcription regulator Rrf2-type RAF_RS03725 4e368356d65a3dc710f3f1d6eb0321dc 139 SUPERFAMILY SSF46785 2 134 3.57E-30 T 21-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RAF_RS03725 4e368356d65a3dc710f3f1d6eb0321dc 139 PANTHER PTHR33221 2 131 5.1E-38 T 21-04-2016 RAF_RS05050 6795e7fe45be0cebbd0b3682a977d4e5 176 SUPERFAMILY SSF54768 9 77 1.46E-19 T 21-04-2016 RAF_RS05050 6795e7fe45be0cebbd0b3682a977d4e5 176 Gene3D G3DSA:3.30.230.10 76 160 1.6E-30 T 21-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAF_RS05050 6795e7fe45be0cebbd0b3682a977d4e5 176 Gene3D G3DSA:3.30.160.20 10 73 4.6E-23 T 21-04-2016 IPR014720 Double-stranded RNA-binding domain RAF_RS05050 6795e7fe45be0cebbd0b3682a977d4e5 176 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 164 31.691 T 21-04-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 RAF_RS05050 6795e7fe45be0cebbd0b3682a977d4e5 176 SUPERFAMILY SSF54211 80 159 4.05E-23 T 21-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RAF_RS05050 6795e7fe45be0cebbd0b3682a977d4e5 176 PANTHER PTHR13718 9 165 4.7E-51 T 21-04-2016 IPR000851 Ribosomal protein S5 GO:0003735|GO:0005840|GO:0006412 RAF_RS05050 6795e7fe45be0cebbd0b3682a977d4e5 176 Pfam PF00333 Ribosomal protein S5, N-terminal domain 11 75 3.3E-23 T 21-04-2016 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 RAF_RS05050 6795e7fe45be0cebbd0b3682a977d4e5 176 ProSitePatterns PS00585 Ribosomal protein S5 signature. 28 60 - T 21-04-2016 IPR018192 Ribosomal protein S5, N-terminal, conserved site RAF_RS05050 6795e7fe45be0cebbd0b3682a977d4e5 176 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 9 164 2.6E-65 T 21-04-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 RAF_RS05050 6795e7fe45be0cebbd0b3682a977d4e5 176 Pfam PF03719 Ribosomal protein S5, C-terminal domain 88 158 1.2E-24 T 21-04-2016 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 RAF_RS05970 fb1a47e29500db1f93b3541ad415a588 117 PANTHER PTHR34475 3 109 1.3E-13 T 21-04-2016 RAF_RS05970 fb1a47e29500db1f93b3541ad415a588 117 Pfam PF13413 Helix-turn-helix domain 4 62 1.7E-19 T 21-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RAF_RS05970 fb1a47e29500db1f93b3541ad415a588 117 PANTHER PTHR34475:SF1 3 109 1.3E-13 T 21-04-2016 RAF_RS04280 448106540fda260bd4e6b8687a531fb5 122 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 40 112 1.4E-11 T 21-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 RAF_RS04280 448106540fda260bd4e6b8687a531fb5 122 PANTHER PTHR23309 1 102 1.3E-15 T 21-04-2016 RAF_RS04280 448106540fda260bd4e6b8687a531fb5 122 Gene3D G3DSA:1.10.1040.10 42 109 2.8E-8 T 21-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RAF_RS04280 448106540fda260bd4e6b8687a531fb5 122 Gene3D G3DSA:3.40.50.720 1 41 1.1E-5 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS04280 448106540fda260bd4e6b8687a531fb5 122 PANTHER PTHR23309:SF2 1 102 1.3E-15 T 21-04-2016 RAF_RS04280 448106540fda260bd4e6b8687a531fb5 122 SUPERFAMILY SSF48179 39 112 3.15E-10 T 21-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 RAF_RS00860 a17eea9a883af8746a8858080b0021b6 492 Gene3D G3DSA:2.40.10.10 181 297 5.8E-43 T 21-04-2016 RAF_RS00860 a17eea9a883af8746a8858080b0021b6 492 SUPERFAMILY SSF50156 253 378 2.5E-23 T 21-04-2016 IPR001478 PDZ domain GO:0005515 RAF_RS00860 a17eea9a883af8746a8858080b0021b6 492 Gene3D G3DSA:2.40.10.10 55 180 1.8E-32 T 21-04-2016 RAF_RS00860 a17eea9a883af8746a8858080b0021b6 492 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 55 487 3.3E-130 T 21-04-2016 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 RAF_RS00860 a17eea9a883af8746a8858080b0021b6 492 SMART SM00228 295 377 1.2E-13 T 21-04-2016 IPR001478 PDZ domain GO:0005515 RAF_RS00860 a17eea9a883af8746a8858080b0021b6 492 PANTHER PTHR22939:SF79 100 421 1.0E-108 T 21-04-2016 RAF_RS00860 a17eea9a883af8746a8858080b0021b6 492 PANTHER PTHR22939:SF79 1 76 1.0E-108 T 21-04-2016 RAF_RS00860 a17eea9a883af8746a8858080b0021b6 492 Pfam PF13365 Trypsin-like peptidase domain 118 256 4.1E-33 T 21-04-2016 RAF_RS00860 a17eea9a883af8746a8858080b0021b6 492 SUPERFAMILY SSF50494 107 292 8.82E-63 T 21-04-2016 IPR009003 Peptidase S1, PA clan RAF_RS00860 a17eea9a883af8746a8858080b0021b6 492 SUPERFAMILY SSF50494 54 77 8.82E-63 T 21-04-2016 IPR009003 Peptidase S1, PA clan RAF_RS00860 a17eea9a883af8746a8858080b0021b6 492 PANTHER PTHR22939 100 421 1.0E-108 T 21-04-2016 RAF_RS00860 a17eea9a883af8746a8858080b0021b6 492 PANTHER PTHR22939 1 76 1.0E-108 T 21-04-2016 RAF_RS00860 a17eea9a883af8746a8858080b0021b6 492 PRINTS PR00834 HtrA/DegQ protease family signature 127 139 1.5E-40 T 21-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAF_RS00860 a17eea9a883af8746a8858080b0021b6 492 PRINTS PR00834 HtrA/DegQ protease family signature 227 244 1.5E-40 T 21-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAF_RS00860 a17eea9a883af8746a8858080b0021b6 492 PRINTS PR00834 HtrA/DegQ protease family signature 189 213 1.5E-40 T 21-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAF_RS00860 a17eea9a883af8746a8858080b0021b6 492 PRINTS PR00834 HtrA/DegQ protease family signature 148 168 1.5E-40 T 21-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAF_RS00860 a17eea9a883af8746a8858080b0021b6 492 PRINTS PR00834 HtrA/DegQ protease family signature 249 266 1.5E-40 T 21-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAF_RS00860 a17eea9a883af8746a8858080b0021b6 492 PRINTS PR00834 HtrA/DegQ protease family signature 335 347 1.5E-40 T 21-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAF_RS00860 a17eea9a883af8746a8858080b0021b6 492 Pfam PF13180 PDZ domain 295 385 1.4E-15 T 21-04-2016 IPR001478 PDZ domain GO:0005515 RAF_RS00860 a17eea9a883af8746a8858080b0021b6 492 Gene3D G3DSA:2.30.42.10 298 391 2.3E-26 T 21-04-2016 IPR001478 PDZ domain GO:0005515 RAF_RS02760 b9eed28f7a82bd765ccf2e2285b193f7 306 SUPERFAMILY SSF56601 1 272 1.93E-70 T 21-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RAF_RS02760 b9eed28f7a82bd765ccf2e2285b193f7 306 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 36 254 2.4E-59 T 21-04-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 RAF_RS02760 b9eed28f7a82bd765ccf2e2285b193f7 306 PANTHER PTHR21581:SF3 1 272 9.9E-65 T 21-04-2016 RAF_RS02760 b9eed28f7a82bd765ccf2e2285b193f7 306 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 61 72 5.2E-15 T 21-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RAF_RS02760 b9eed28f7a82bd765ccf2e2285b193f7 306 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 114 131 5.2E-15 T 21-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RAF_RS02760 b9eed28f7a82bd765ccf2e2285b193f7 306 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 141 154 5.2E-15 T 21-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RAF_RS02760 b9eed28f7a82bd765ccf2e2285b193f7 306 Gene3D G3DSA:3.40.710.10 10 272 5.9E-84 T 21-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RAF_RS02760 b9eed28f7a82bd765ccf2e2285b193f7 306 PANTHER PTHR21581 1 272 9.9E-65 T 21-04-2016 RAF_RS01945 2b984c528460f4fd55a2b94aea179332 163 SUPERFAMILY SSF109604 8 162 1.04E-33 T 21-04-2016 RAF_RS01945 2b984c528460f4fd55a2b94aea179332 163 Pfam PF13328 HD domain 34 162 1.7E-10 T 21-04-2016 IPR003607 HD/PDEase domain RAF_RS01945 2b984c528460f4fd55a2b94aea179332 163 PANTHER PTHR21262:SF0 5 163 6.7E-22 T 21-04-2016 RAF_RS01945 2b984c528460f4fd55a2b94aea179332 163 PANTHER PTHR21262 5 163 6.7E-22 T 21-04-2016 RAF_RS01695 3a8c1b1924766ee80205dea8f8c218b3 231 Pfam PF02666 Phosphatidylserine decarboxylase 45 215 7.9E-30 T 21-04-2016 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 RAF_RS01695 3a8c1b1924766ee80205dea8f8c218b3 231 PANTHER PTHR35809 1 222 2.4E-72 T 21-04-2016 RAF_RS01695 3a8c1b1924766ee80205dea8f8c218b3 231 TIGRFAM TIGR00164 PS_decarb_rel: phosphatidylserine decarboxylase homolog 10 218 4.5E-57 T 21-04-2016 IPR033175 Phosphatidylserine decarboxylase, archaeal-type KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 RAF_RS01695 3a8c1b1924766ee80205dea8f8c218b3 231 Hamap MF_00664 Phosphatidylserine decarboxylase proenzyme [psd]. 10 219 38.303 T 21-04-2016 IPR033175 Phosphatidylserine decarboxylase, archaeal-type KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 RAF_RS00495 e4c4cc13960c9eea7d32dc379a71028a 576 Hamap MF_00123 Arginine--tRNA ligase [argS]. 5 576 24.524 T 21-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RAF_RS00495 e4c4cc13960c9eea7d32dc379a71028a 576 PANTHER PTHR11956:SF6 313 576 2.5E-161 T 21-04-2016 RAF_RS00495 e4c4cc13960c9eea7d32dc379a71028a 576 PANTHER PTHR11956:SF6 1 297 2.5E-161 T 21-04-2016 RAF_RS00495 e4c4cc13960c9eea7d32dc379a71028a 576 SUPERFAMILY SSF47323 440 576 1.11E-32 T 21-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS00495 e4c4cc13960c9eea7d32dc379a71028a 576 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 128 137 - T 21-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS00495 e4c4cc13960c9eea7d32dc379a71028a 576 SUPERFAMILY SSF55190 8 102 3.01E-17 T 21-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RAF_RS00495 e4c4cc13960c9eea7d32dc379a71028a 576 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 5 576 1.6E-101 T 21-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RAF_RS00495 e4c4cc13960c9eea7d32dc379a71028a 576 SMART SM01016 5 89 5.4E-21 T 21-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RAF_RS00495 e4c4cc13960c9eea7d32dc379a71028a 576 Gene3D G3DSA:3.40.50.620 112 451 3.3E-85 T 21-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS00495 e4c4cc13960c9eea7d32dc379a71028a 576 PRINTS PR01038 Arginyl-tRNA synthetase signature 118 133 1.0E-22 T 21-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RAF_RS00495 e4c4cc13960c9eea7d32dc379a71028a 576 PRINTS PR01038 Arginyl-tRNA synthetase signature 133 149 1.0E-22 T 21-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RAF_RS00495 e4c4cc13960c9eea7d32dc379a71028a 576 PRINTS PR01038 Arginyl-tRNA synthetase signature 157 170 1.0E-22 T 21-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RAF_RS00495 e4c4cc13960c9eea7d32dc379a71028a 576 PRINTS PR01038 Arginyl-tRNA synthetase signature 315 336 1.0E-22 T 21-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RAF_RS00495 e4c4cc13960c9eea7d32dc379a71028a 576 Gene3D G3DSA:3.30.1360.70 1 107 4.2E-24 T 21-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RAF_RS00495 e4c4cc13960c9eea7d32dc379a71028a 576 SUPERFAMILY SSF52374 112 456 3.66E-78 T 21-04-2016 RAF_RS00495 e4c4cc13960c9eea7d32dc379a71028a 576 Pfam PF05746 DALR anticodon binding domain 446 576 1.0E-30 T 21-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RAF_RS00495 e4c4cc13960c9eea7d32dc379a71028a 576 SMART SM00836 446 576 1.8E-50 T 21-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RAF_RS00495 e4c4cc13960c9eea7d32dc379a71028a 576 Pfam PF00750 tRNA synthetases class I (R) 98 178 4.9E-11 T 21-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RAF_RS00495 e4c4cc13960c9eea7d32dc379a71028a 576 PANTHER PTHR11956 313 576 2.5E-161 T 21-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RAF_RS00495 e4c4cc13960c9eea7d32dc379a71028a 576 PANTHER PTHR11956 1 297 2.5E-161 T 21-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RAF_RS00495 e4c4cc13960c9eea7d32dc379a71028a 576 Gene3D G3DSA:1.10.730.10 452 576 2.3E-34 T 21-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 RAF_RS00495 e4c4cc13960c9eea7d32dc379a71028a 576 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 6 89 4.7E-16 T 21-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 RAF_RS02465 4cae7470258b1e1c166785a536223a6b 183 Hamap MF_00527 Putative 3-methyladenine DNA glycosylase. 9 176 30.448 T 21-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 RAF_RS02465 4cae7470258b1e1c166785a536223a6b 183 Gene3D G3DSA:3.10.300.10 4 171 4.7E-51 T 21-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 RAF_RS02465 4cae7470258b1e1c166785a536223a6b 183 Pfam PF02245 Methylpurine-DNA glycosylase (MPG) 10 171 7.4E-52 T 21-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 RAF_RS02465 4cae7470258b1e1c166785a536223a6b 183 PANTHER PTHR10429:SF0 1 169 1.2E-51 T 21-04-2016 RAF_RS02465 4cae7470258b1e1c166785a536223a6b 183 SUPERFAMILY SSF50486 5 171 7.3E-57 T 21-04-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 RAF_RS02465 4cae7470258b1e1c166785a536223a6b 183 TIGRFAM TIGR00567 3mg: DNA-3-methyladenine glycosylase 8 172 1.8E-41 T 21-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 RAF_RS02465 4cae7470258b1e1c166785a536223a6b 183 PANTHER PTHR10429 1 169 1.2E-51 T 21-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 RAF_RS00080 c59c582af415b53398880f538f842095 317 SUPERFAMILY SSF53807 61 316 1.67E-47 T 21-04-2016 RAF_RS00080 c59c582af415b53398880f538f842095 317 Gene3D G3DSA:3.40.50.1980 53 196 2.9E-27 T 21-04-2016 RAF_RS00080 c59c582af415b53398880f538f842095 317 Pfam PF01297 Zinc-uptake complex component A periplasmic 71 310 7.7E-32 T 21-04-2016 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 RAF_RS00080 c59c582af415b53398880f538f842095 317 PANTHER PTHR30477:SF1 30 289 4.1E-25 T 21-04-2016 RAF_RS00080 c59c582af415b53398880f538f842095 317 PANTHER PTHR30477 30 289 4.1E-25 T 21-04-2016 RAF_RS02480 66637cd178ea4affae062dbab333569a 242 TIGRFAM TIGR03774 RPE2: rickettsial palindromic element RPE2 domain 67 101 1.7E-23 T 21-04-2016 IPR022436 Rickettsia palindromic element RPE2 RAF_RS02480 66637cd178ea4affae062dbab333569a 242 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 116 171 7.0E-27 T 21-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 RAF_RS02480 66637cd178ea4affae062dbab333569a 242 SUPERFAMILY SSF143243 16 66 2.09E-49 T 21-04-2016 RAF_RS02480 66637cd178ea4affae062dbab333569a 242 SUPERFAMILY SSF143243 98 218 2.09E-49 T 21-04-2016 RAF_RS02480 66637cd178ea4affae062dbab333569a 242 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 6 192 29.393 T 21-04-2016 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 RAF_RS02480 66637cd178ea4affae062dbab333569a 242 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 31 185 9.4E-38 T 21-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 RAF_RS02480 66637cd178ea4affae062dbab333569a 242 PANTHER PTHR10884 100 238 9.7E-65 T 21-04-2016 RAF_RS02480 66637cd178ea4affae062dbab333569a 242 PANTHER PTHR10884 21 64 9.7E-65 T 21-04-2016 RAF_RS06095 ec607e84634912b7f39fb70cace48fef 157 Pfam PF04355 SmpA / OmlA family 29 99 7.7E-10 T 21-04-2016 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 RAF_RS02185 f87a32d2e064f96366910d11b49638d6 323 Gene3D G3DSA:3.30.1150.10 201 321 1.4E-9 T 21-04-2016 RAF_RS02185 f87a32d2e064f96366910d11b49638d6 323 SUPERFAMILY SSF74653 213 321 9.22E-12 T 21-04-2016 RAF_RS00175 859379669975697156489c9f530ef489 534 Pfam PF10119 Predicted methyltransferase regulatory domain 217 298 1.2E-24 T 21-04-2016 IPR018773 Methyltransferase regulatory domain, predicted RAF_RS00175 859379669975697156489c9f530ef489 534 SUPERFAMILY SSF53335 12 182 5.27E-29 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS00175 859379669975697156489c9f530ef489 534 Gene3D G3DSA:3.40.50.150 17 162 2.6E-29 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS00175 859379669975697156489c9f530ef489 534 PANTHER PTHR10108:SF829 27 157 1.1E-22 T 21-04-2016 RAF_RS00175 859379669975697156489c9f530ef489 534 PANTHER PTHR10108:SF829 463 474 1.1E-22 T 21-04-2016 RAF_RS00175 859379669975697156489c9f530ef489 534 Pfam PF13847 Methyltransferase domain 45 152 8.3E-17 T 21-04-2016 IPR025714 Methyltransferase domain RAF_RS00175 859379669975697156489c9f530ef489 534 PANTHER PTHR10108 27 157 1.1E-22 T 21-04-2016 RAF_RS00175 859379669975697156489c9f530ef489 534 PANTHER PTHR10108 463 474 1.1E-22 T 21-04-2016 RAF_RS05275 4e211b57fee393a2a65334978bcb1834 380 PANTHER PTHR33295 1 379 3.2E-86 T 21-04-2016 RAF_RS05275 4e211b57fee393a2a65334978bcb1834 380 PANTHER PTHR33295:SF4 1 379 3.2E-86 T 21-04-2016 RAF_RS05275 4e211b57fee393a2a65334978bcb1834 380 Gene3D G3DSA:3.40.50.300 2 128 1.9E-9 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05275 4e211b57fee393a2a65334978bcb1834 380 Pfam PF13635 Domain of unknown function (DUF4143) 176 327 6.5E-23 T 21-04-2016 IPR025420 Domain of unknown function DUF4143 RAF_RS05275 4e211b57fee393a2a65334978bcb1834 380 SUPERFAMILY SSF52540 2 175 3.6E-18 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05275 4e211b57fee393a2a65334978bcb1834 380 Pfam PF13173 AAA domain 20 137 6.2E-24 T 21-04-2016 RAF_RS05275 4e211b57fee393a2a65334978bcb1834 380 Gene3D G3DSA:3.40.1350.10 274 361 2.4E-5 T 21-04-2016 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 RAF_RS06475 80709307b06e4f84dc7b29822cc2c692 524 Pfam PF13624 SurA N-terminal domain 1 158 1.0E-21 T 21-04-2016 RAF_RS06475 80709307b06e4f84dc7b29822cc2c692 524 Pfam PF13145 PPIC-type PPIASE domain 249 383 1.2E-12 T 21-04-2016 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 RAF_RS06475 80709307b06e4f84dc7b29822cc2c692 524 Gene3D G3DSA:3.10.50.40 293 392 1.5E-5 T 21-04-2016 RAF_RS01915 77080f5d6302578380ccb9d605634392 68 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 29 68 2.0E-4 T 21-04-2016 IPR006315 Outer membrane autotransporter barrel GO:0019867 RAF_RS02315 9ded18162621050c459289004329a024 200 Pfam PF00578 AhpC/TSA family 5 139 1.3E-33 T 21-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 RAF_RS02315 9ded18162621050c459289004329a024 200 Gene3D G3DSA:3.30.1020.10 164 191 1.2E-7 T 21-04-2016 RAF_RS02315 9ded18162621050c459289004329a024 200 PANTHER PTHR10681 1 196 3.3E-83 T 21-04-2016 RAF_RS02315 9ded18162621050c459289004329a024 200 PIRSF PIRSF000239 1 199 2.5E-58 T 21-04-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15 RAF_RS02315 9ded18162621050c459289004329a024 200 Gene3D G3DSA:3.40.30.10 5 163 1.4E-60 T 21-04-2016 IPR012336 Thioredoxin-like fold RAF_RS02315 9ded18162621050c459289004329a024 200 PANTHER PTHR10681:SF22 1 196 3.3E-83 T 21-04-2016 RAF_RS02315 9ded18162621050c459289004329a024 200 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 160 194 1.2E-10 T 21-04-2016 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RAF_RS02315 9ded18162621050c459289004329a024 200 SUPERFAMILY SSF52833 4 195 1.32E-61 T 21-04-2016 IPR012336 Thioredoxin-like fold RAF_RS05960 30161b891455664661916635e4ae81f9 105 SUPERFAMILY SSF102829 4 79 3.92E-16 T 21-04-2016 IPR007838 Cell division protein ZapA-like RAF_RS05960 30161b891455664661916635e4ae81f9 105 Pfam PF05164 Cell division protein ZapA 4 87 7.4E-16 T 21-04-2016 IPR007838 Cell division protein ZapA-like RAF_RS02920 a1ab6980c3fdedf9dbb063c5ac68b179 148 Pfam PF00873 AcrB/AcrD/AcrF family 1 147 3.3E-20 T 21-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 RAF_RS02920 a1ab6980c3fdedf9dbb063c5ac68b179 148 SUPERFAMILY SSF82693 7 102 8.37E-16 T 21-04-2016 RAF_RS02920 a1ab6980c3fdedf9dbb063c5ac68b179 148 PANTHER PTHR32063:SF21 1 148 3.6E-45 T 21-04-2016 RAF_RS02920 a1ab6980c3fdedf9dbb063c5ac68b179 148 PANTHER PTHR32063 1 148 3.6E-45 T 21-04-2016 RAF_RS02920 a1ab6980c3fdedf9dbb063c5ac68b179 148 Gene3D G3DSA:3.30.70.1430 7 102 2.9E-13 T 21-04-2016 RAF_RS02595 4a67424c0926bd8bb9b9f32cd3c15a7c 310 PANTHER PTHR31752 11 29 1.3E-24 T 21-04-2016 RAF_RS02595 4a67424c0926bd8bb9b9f32cd3c15a7c 310 PANTHER PTHR31752 83 310 1.3E-24 T 21-04-2016 RAF_RS02595 4a67424c0926bd8bb9b9f32cd3c15a7c 310 PANTHER PTHR31752:SF13 11 29 1.3E-24 T 21-04-2016 RAF_RS02595 4a67424c0926bd8bb9b9f32cd3c15a7c 310 PANTHER PTHR31752:SF13 83 310 1.3E-24 T 21-04-2016 RAF_RS02595 4a67424c0926bd8bb9b9f32cd3c15a7c 310 Pfam PF03547 Membrane transport protein 152 305 3.7E-11 T 21-04-2016 IPR004776 Auxin efflux carrier GO:0016021|GO:0055085 RAF_RS03680 2a5eaee6bc55393743f3aa534bbe3e11 149 SUPERFAMILY SSF55729 1 141 5.32E-20 T 21-04-2016 IPR016181 Acyl-CoA N-acyltransferase RAF_RS03680 2a5eaee6bc55393743f3aa534bbe3e11 149 Pfam PF13673 Acetyltransferase (GNAT) domain 36 140 5.1E-11 T 21-04-2016 IPR000182 GNAT domain GO:0008080 RAF_RS03680 2a5eaee6bc55393743f3aa534bbe3e11 149 PANTHER PTHR23091 1 114 3.1E-12 T 21-04-2016 RAF_RS03680 2a5eaee6bc55393743f3aa534bbe3e11 149 Gene3D G3DSA:3.40.630.30 2 145 1.2E-24 T 21-04-2016 IPR016181 Acyl-CoA N-acyltransferase RAF_RS05565 407f13683c77670c34f24985462c1e30 290 PANTHER PTHR30606 1 290 1.0E-51 T 21-04-2016 RAF_RS05565 407f13683c77670c34f24985462c1e30 290 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 1 290 2.0E-90 T 21-04-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 RAF_RS06165 f4c444cea91dcd3d72cd99c134f15364 810 SUPERFAMILY SSF52540 405 737 8.92E-10 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06165 f4c444cea91dcd3d72cd99c134f15364 810 Pfam PF03135 CagE, TrbE, VirB family, component of type IV transporter system 183 383 1.1E-51 T 21-04-2016 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain GO:0005524 RAF_RS06165 f4c444cea91dcd3d72cd99c134f15364 810 TIGRFAM TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family 12 806 2.6E-224 T 21-04-2016 IPR004346 CagE, TrbE, VirB component of type IV transporter system GO:0005524 RAF_RS00645 fb2ea96ce1d04e9772fa4b1de59f8676 116 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 1 111 2.8E-33 T 21-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 RAF_RS00645 fb2ea96ce1d04e9772fa4b1de59f8676 116 Gene3D G3DSA:3.40.50.2020 1 73 2.0E-24 T 21-04-2016 IPR029057 Phosphoribosyltransferase-like RAF_RS00645 fb2ea96ce1d04e9772fa4b1de59f8676 116 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 1 31 1.2E-5 T 21-04-2016 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 RAF_RS00645 fb2ea96ce1d04e9772fa4b1de59f8676 116 PANTHER PTHR10210:SF32 1 111 6.2E-31 T 21-04-2016 RAF_RS00645 fb2ea96ce1d04e9772fa4b1de59f8676 116 Gene3D G3DSA:3.40.50.2020 74 110 4.1E-8 T 21-04-2016 IPR029057 Phosphoribosyltransferase-like RAF_RS00645 fb2ea96ce1d04e9772fa4b1de59f8676 116 SUPERFAMILY SSF53271 45 105 3.1E-5 T 21-04-2016 IPR029057 Phosphoribosyltransferase-like RAF_RS00645 fb2ea96ce1d04e9772fa4b1de59f8676 116 PANTHER PTHR10210 1 111 6.2E-31 T 21-04-2016 RAF_RS00645 fb2ea96ce1d04e9772fa4b1de59f8676 116 SUPERFAMILY SSF53271 1 63 1.45E-15 T 21-04-2016 IPR029057 Phosphoribosyltransferase-like RAF_RS04715 0d15ba61f5fe44c30da9793e3232aee6 67 Gene3D G3DSA:3.30.460.10 3 58 9.6E-9 T 21-04-2016 RAF_RS04715 0d15ba61f5fe44c30da9793e3232aee6 67 SUPERFAMILY SSF81301 3 56 6.54E-8 T 21-04-2016 RAF_RS06965 bc319cd1a46b5578c4ccb5513f1b3094 116 Pfam PF02498 BRO family, N-terminal domain 14 48 2.8E-5 T 21-04-2016 IPR003497 BRO N-terminal domain RAF_RS03560 ab07c799bec3c9a322940f26bb489cfa 80 Pfam PF00216 Bacterial DNA-binding protein 3 58 3.8E-13 T 21-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RAF_RS03560 ab07c799bec3c9a322940f26bb489cfa 80 SUPERFAMILY SSF47729 2 59 6.04E-13 T 21-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RAF_RS03560 ab07c799bec3c9a322940f26bb489cfa 80 SMART SM00411 2 79 1.6E-11 T 21-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 RAF_RS03560 ab07c799bec3c9a322940f26bb489cfa 80 Gene3D G3DSA:4.10.520.10 3 58 2.2E-14 T 21-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 RAF_RS03560 ab07c799bec3c9a322940f26bb489cfa 80 PANTHER PTHR33175 2 58 7.0E-13 T 21-04-2016 RAF_RS06445 0c15c6ae680723d7cb52f43f4571e811 305 PANTHER PTHR30349 4 302 2.3E-65 T 21-04-2016 RAF_RS06445 0c15c6ae680723d7cb52f43f4571e811 305 Gene3D G3DSA:1.10.443.10 120 297 2.9E-41 T 21-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 RAF_RS06445 0c15c6ae680723d7cb52f43f4571e811 305 Gene3D G3DSA:1.10.150.130 7 101 4.5E-19 T 21-04-2016 IPR023109 Integrase/recombinase, N-terminal RAF_RS06445 0c15c6ae680723d7cb52f43f4571e811 305 Pfam PF00589 Phage integrase family 123 288 3.0E-30 T 21-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RAF_RS06445 0c15c6ae680723d7cb52f43f4571e811 305 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 6 304 29.873 T 21-04-2016 IPR023009 Tyrosine recombinase XerC/XerD RAF_RS06445 0c15c6ae680723d7cb52f43f4571e811 305 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 10 95 6.8E-22 T 21-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 RAF_RS06445 0c15c6ae680723d7cb52f43f4571e811 305 SUPERFAMILY SSF56349 6 293 1.97E-45 T 21-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RAF_RS06445 0c15c6ae680723d7cb52f43f4571e811 305 PANTHER PTHR30349:SF5 4 302 2.3E-65 T 21-04-2016 RAF_RS00620 3830fcedaa983b578a42e26532cebe38 218 Pfam PF04028 Domain of unknown function (DUF374) 74 137 4.1E-21 T 21-04-2016 IPR007172 Domain of unknown function DUF374 RAF_RS00620 3830fcedaa983b578a42e26532cebe38 218 ProDom PD032436 LIPOPROTEIN UNCHARACTERIZED PROBABLE CJ0457C SIMILAR TRANSFERASE BACTERIA PRECURSOR SIGNAL CC0304 9 138 3.0E-71 T 21-04-2016 IPR007172 Domain of unknown function DUF374 RAF_RS06730 d0a82f34966ce6c452cb615218d89c2e 209 Pfam PF02677 Uncharacterized BCR, COG1636 14 188 2.0E-62 T 21-04-2016 IPR003828 Protein of unknown function DUF208 RAF_RS06730 d0a82f34966ce6c452cb615218d89c2e 209 PANTHER PTHR36701 1 209 9.5E-80 T 21-04-2016 RAF_RS03425 edc919a1238993aea71ca3fbde22d054 183 Pfam PF01327 Polypeptide deformylase 9 158 2.7E-44 T 21-04-2016 IPR023635 Peptide deformylase RAF_RS03425 edc919a1238993aea71ca3fbde22d054 183 PIRSF PIRSF004749 1 182 1.1E-55 T 21-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RAF_RS03425 edc919a1238993aea71ca3fbde22d054 183 Gene3D G3DSA:3.90.45.10 9 170 3.8E-51 T 21-04-2016 IPR023635 Peptide deformylase RAF_RS03425 edc919a1238993aea71ca3fbde22d054 183 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 9 165 7.7E-45 T 21-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RAF_RS03425 edc919a1238993aea71ca3fbde22d054 183 PRINTS PR01576 Peptide deformylase signature 95 106 4.0E-27 T 21-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RAF_RS03425 edc919a1238993aea71ca3fbde22d054 183 PRINTS PR01576 Peptide deformylase signature 107 125 4.0E-27 T 21-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RAF_RS03425 edc919a1238993aea71ca3fbde22d054 183 PRINTS PR01576 Peptide deformylase signature 37 66 4.0E-27 T 21-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RAF_RS03425 edc919a1238993aea71ca3fbde22d054 183 PRINTS PR01576 Peptide deformylase signature 126 155 4.0E-27 T 21-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RAF_RS03425 edc919a1238993aea71ca3fbde22d054 183 SUPERFAMILY SSF56420 8 170 2.22E-50 T 21-04-2016 IPR023635 Peptide deformylase RAF_RS03425 edc919a1238993aea71ca3fbde22d054 183 Hamap MF_00163 Peptide deformylase [def]. 6 168 24.979 T 21-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RAF_RS03425 edc919a1238993aea71ca3fbde22d054 183 PANTHER PTHR10458 5 176 6.3E-57 T 21-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 RAF_RS03825 31c953a426a92eb8369eeeb4395d9459 224 SUPERFAMILY SSF69618 1 218 5.89E-20 T 21-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RAF_RS03825 31c953a426a92eb8369eeeb4395d9459 224 Pfam PF02602 Uroporphyrinogen-III synthase HemD 30 195 3.0E-8 T 21-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 RAF_RS03530 80d969ef05c7ee645694f503730055dc 355 Gene3D G3DSA:3.30.160.20 209 287 1.6E-36 T 21-04-2016 IPR014720 Double-stranded RNA-binding domain RAF_RS03530 80d969ef05c7ee645694f503730055dc 355 SUPERFAMILY SSF75620 28 352 1.57E-123 T 21-04-2016 RAF_RS03530 80d969ef05c7ee645694f503730055dc 355 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 226 242 - T 21-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RAF_RS03530 80d969ef05c7ee645694f503730055dc 355 SMART SM00937 62 177 8.7E-48 T 21-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 RAF_RS03530 80d969ef05c7ee645694f503730055dc 355 Pfam PF03462 PCRF domain 12 202 9.6E-63 T 21-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 RAF_RS03530 80d969ef05c7ee645694f503730055dc 355 Pfam PF00472 RF-1 domain 210 319 4.5E-42 T 21-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RAF_RS03530 80d969ef05c7ee645694f503730055dc 355 PANTHER PTHR11075 5 355 2.8E-168 T 21-04-2016 RAF_RS03530 80d969ef05c7ee645694f503730055dc 355 Gene3D G3DSA:1.20.58.410 7 92 3.7E-6 T 21-04-2016 RAF_RS03530 80d969ef05c7ee645694f503730055dc 355 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 4 353 3.5E-148 T 21-04-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 RAF_RS03530 80d969ef05c7ee645694f503730055dc 355 PANTHER PTHR11075:SF9 5 355 2.8E-168 T 21-04-2016 RAF_RS03530 80d969ef05c7ee645694f503730055dc 355 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 3 355 37.816 T 21-04-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 RAF_RS03550 b3057fe31f0b9a4850257f3431bea7c4 458 Pfam PF07498 Rho termination factor, N-terminal domain 35 76 3.5E-14 T 21-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 RAF_RS03550 b3057fe31f0b9a4850257f3431bea7c4 458 Gene3D G3DSA:2.40.50.140 79 147 9.4E-36 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS03550 b3057fe31f0b9a4850257f3431bea7c4 458 SUPERFAMILY SSF50249 79 154 5.43E-29 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS03550 b3057fe31f0b9a4850257f3431bea7c4 458 PANTHER PTHR15184 6 176 1.1E-180 T 21-04-2016 RAF_RS03550 b3057fe31f0b9a4850257f3431bea7c4 458 PANTHER PTHR15184 192 448 1.1E-180 T 21-04-2016 RAF_RS03550 b3057fe31f0b9a4850257f3431bea7c4 458 Gene3D G3DSA:1.10.720.10 31 76 7.3E-17 T 21-04-2016 RAF_RS03550 b3057fe31f0b9a4850257f3431bea7c4 458 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 191 395 5.1E-23 T 21-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 RAF_RS03550 b3057fe31f0b9a4850257f3431bea7c4 458 SMART SM00382 202 369 4.8E-7 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS03550 b3057fe31f0b9a4850257f3431bea7c4 458 TIGRFAM TIGR00767 rho: transcription termination factor Rho 32 449 3.8E-215 T 21-04-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 RAF_RS03550 b3057fe31f0b9a4850257f3431bea7c4 458 Pfam PF07497 Rho termination factor, RNA-binding domain 82 154 7.2E-32 T 21-04-2016 IPR011113 Rho termination factor, RNA-binding GO:0003723|GO:0006353 RAF_RS03550 b3057fe31f0b9a4850257f3431bea7c4 458 SUPERFAMILY SSF68912 31 75 2.71E-9 T 21-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 RAF_RS03550 b3057fe31f0b9a4850257f3431bea7c4 458 SMART SM00357 82 148 1.6E-16 T 21-04-2016 IPR011129 Cold shock protein GO:0003676 RAF_RS03550 b3057fe31f0b9a4850257f3431bea7c4 458 PANTHER PTHR15184:SF34 6 176 1.1E-180 T 21-04-2016 RAF_RS03550 b3057fe31f0b9a4850257f3431bea7c4 458 PANTHER PTHR15184:SF34 192 448 1.1E-180 T 21-04-2016 RAF_RS03550 b3057fe31f0b9a4850257f3431bea7c4 458 Gene3D G3DSA:3.40.50.300 160 449 1.6E-106 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS03550 b3057fe31f0b9a4850257f3431bea7c4 458 SMART SM00959 35 77 3.4E-13 T 21-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 RAF_RS03550 b3057fe31f0b9a4850257f3431bea7c4 458 Hamap MF_01884 Transcription termination factor Rho [rho]. 31 451 231.21 T 21-04-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 RAF_RS03550 b3057fe31f0b9a4850257f3431bea7c4 458 SUPERFAMILY SSF52540 120 403 1.04E-67 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02035 797fd5e8f49dc447a4f6034d6e95469e 591 PANTHER PTHR37937:SF1 16 571 1.3E-57 T 21-04-2016 RAF_RS02035 797fd5e8f49dc447a4f6034d6e95469e 591 Gene3D G3DSA:3.40.50.300 114 219 2.2E-48 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02035 797fd5e8f49dc447a4f6034d6e95469e 591 Gene3D G3DSA:3.40.50.300 351 552 2.2E-48 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02035 797fd5e8f49dc447a4f6034d6e95469e 591 SUPERFAMILY SSF52540 111 553 3.08E-46 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02035 797fd5e8f49dc447a4f6034d6e95469e 591 PANTHER PTHR37937 16 571 1.3E-57 T 21-04-2016 RAF_RS02035 797fd5e8f49dc447a4f6034d6e95469e 591 Pfam PF02534 Type IV secretory system Conjugative DNA transfer 120 567 2.0E-165 T 21-04-2016 IPR003688 Type IV secretion system protein TraG/VirD4 GO:0009291|GO:0016020 RAF_RS04905 34b49ee7aba52729b62155cee2e63cb2 178 Pfam PF06776 Invasion associated locus B (IalB) protein 39 176 1.7E-15 T 21-04-2016 IPR010642 Invasion protein B RAF_RS05815 7c9d47f8e5b9db96f3feabd5f538181c 47 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 6 44 3.7E-5 T 21-04-2016 IPR003477 mRNA interferase PemK-like protein GO:0003677 RAF_RS05815 7c9d47f8e5b9db96f3feabd5f538181c 47 Gene3D G3DSA:2.30.30.110 5 47 9.4E-7 T 21-04-2016 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor RAF_RS05815 7c9d47f8e5b9db96f3feabd5f538181c 47 SUPERFAMILY SSF50118 5 47 5.23E-7 T 21-04-2016 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor RAF_RS02010 5bd3055b7b0b4a62642cd798f59dfc89 59 ProDom PD194885 TRANSMEMBRANE MEMBRANE RP288 19 58 6.0E-16 T 21-04-2016 IPR024444 Protein of unknown function DUF2706 RAF_RS02010 5bd3055b7b0b4a62642cd798f59dfc89 59 Pfam PF10913 Protein of unknown function (DUF2706) 1 59 6.9E-41 T 21-04-2016 IPR024444 Protein of unknown function DUF2706 RAF_RS06355 1c1d78a26db7cd0b9a7cd8bed6052b45 205 Gene3D G3DSA:2.40.128.130 3 205 5.8E-25 T 21-04-2016 IPR005546 Autotransporter beta-domain RAF_RS06355 1c1d78a26db7cd0b9a7cd8bed6052b45 205 Pfam PF03797 Autotransporter beta-domain 3 195 2.3E-23 T 21-04-2016 IPR005546 Autotransporter beta-domain RAF_RS06355 1c1d78a26db7cd0b9a7cd8bed6052b45 205 SUPERFAMILY SSF103515 3 205 1.83E-30 T 21-04-2016 IPR005546 Autotransporter beta-domain RAF_RS06355 1c1d78a26db7cd0b9a7cd8bed6052b45 205 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 3 205 1.1E-14 T 21-04-2016 IPR006315 Outer membrane autotransporter barrel GO:0019867 RAF_RS03505 ce6073aa840f1bc216cd8e0c4bf09996 162 TIGRFAM TIGR02217 chp_TIGR02217: TIGR02217 family protein 1 161 7.0E-59 T 21-04-2016 IPR011740 Protein of unknown function DUF2460 RAF_RS03505 ce6073aa840f1bc216cd8e0c4bf09996 162 Pfam PF09343 Conserved hypothetical protein 2217 (DUF2460) 8 160 2.4E-27 T 21-04-2016 IPR011740 Protein of unknown function DUF2460 RAF_RS02180 cb175e5c54609d3d0d0601010ea8b1fe 143 TIGRFAM TIGR02801 tolR: protein TolR 17 136 5.8E-39 T 21-04-2016 IPR014168 Biopolymer transport, TolR GO:0015031|GO:0016021 RAF_RS02180 cb175e5c54609d3d0d0601010ea8b1fe 143 PANTHER PTHR30558 1 137 1.8E-34 T 21-04-2016 RAF_RS02180 cb175e5c54609d3d0d0601010ea8b1fe 143 Pfam PF02472 Biopolymer transport protein ExbD/TolR 18 135 4.8E-28 T 21-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 RAF_RS02180 cb175e5c54609d3d0d0601010ea8b1fe 143 PANTHER PTHR30558:SF7 1 137 1.8E-34 T 21-04-2016 RAF_RS03090 92e80e7c87a33bc9d6e62eb08230a467 83 SUPERFAMILY SSF89447 10 54 1.24E-7 T 21-04-2016 RAF_RS03090 92e80e7c87a33bc9d6e62eb08230a467 83 Gene3D G3DSA:2.10.260.10 10 39 3.1E-6 T 21-04-2016 RAF_RS03090 92e80e7c87a33bc9d6e62eb08230a467 83 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 6 47 5.1E-13 T 21-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 RAF_RS03090 92e80e7c87a33bc9d6e62eb08230a467 83 SMART SM00966 6 52 1.5E-7 T 21-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 RAF_RS06440 9675e1637268048252d6dc1ac776cc15 143 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 97 131 4.3E-12 T 21-04-2016 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 RAF_RS06440 9675e1637268048252d6dc1ac776cc15 143 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 102 126 - T 21-04-2016 IPR020458 Zinc finger, DksA/TraR C4-type conserved site RAF_RS06440 9675e1637268048252d6dc1ac776cc15 143 SUPERFAMILY SSF57716 99 136 1.85E-9 T 21-04-2016 RAF_RS06440 9675e1637268048252d6dc1ac776cc15 143 SUPERFAMILY SSF109635 7 98 1.57E-29 T 21-04-2016 RAF_RS06440 9675e1637268048252d6dc1ac776cc15 143 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 20 129 2.1E-45 T 21-04-2016 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 RAF_RS06440 9675e1637268048252d6dc1ac776cc15 143 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 16 138 29.367 T 21-04-2016 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 RAF_RS06440 9675e1637268048252d6dc1ac776cc15 143 PANTHER PTHR33823:SF2 1 141 8.8E-42 T 21-04-2016 RAF_RS06440 9675e1637268048252d6dc1ac776cc15 143 PANTHER PTHR33823 1 141 8.8E-42 T 21-04-2016 RAF_RS02710 f1d610e9297a6263548430af1ce9e49b 189 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 11 185 8.0E-62 T 21-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RAF_RS02710 f1d610e9297a6263548430af1ce9e49b 189 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 114 124 - T 21-04-2016 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RAF_RS02710 f1d610e9297a6263548430af1ce9e49b 189 SUPERFAMILY SSF55620 3 186 9.64E-69 T 21-04-2016 RAF_RS02710 f1d610e9297a6263548430af1ce9e49b 189 Pfam PF01227 GTP cyclohydrolase I 10 185 2.8E-66 T 21-04-2016 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RAF_RS02710 f1d610e9297a6263548430af1ce9e49b 189 Gene3D G3DSA:3.30.1130.10 69 187 2.1E-48 T 21-04-2016 RAF_RS02710 f1d610e9297a6263548430af1ce9e49b 189 Gene3D G3DSA:1.10.286.10 4 56 1.1E-21 T 21-04-2016 RAF_RS02710 f1d610e9297a6263548430af1ce9e49b 189 PANTHER PTHR11109 6 185 3.5E-76 T 21-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RAF_RS02710 f1d610e9297a6263548430af1ce9e49b 189 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 5 187 36.074 T 21-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RAF_RS02710 f1d610e9297a6263548430af1ce9e49b 189 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 67 82 - T 21-04-2016 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 RAF_RS02140 57be860e0d9a9940b3a75641f0ae96f3 465 PANTHER PTHR11785:SF405 2 457 8.3E-127 T 21-04-2016 RAF_RS02140 57be860e0d9a9940b3a75641f0ae96f3 465 PANTHER PTHR11785 2 457 8.3E-127 T 21-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 RAF_RS02140 57be860e0d9a9940b3a75641f0ae96f3 465 Pfam PF13520 Amino acid permease 25 447 2.2E-47 T 21-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 RAF_RS02140 57be860e0d9a9940b3a75641f0ae96f3 465 PIRSF PIRSF006060 4 465 1.1E-82 T 21-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 RAF_RS06720 2e59f98753392b425b172cb013f7f65e 135 Gene3D G3DSA:3.40.50.1010 1 125 7.8E-19 T 21-04-2016 IPR029060 PIN domain-like RAF_RS06720 2e59f98753392b425b172cb013f7f65e 135 SUPERFAMILY SSF88723 1 134 1.63E-26 T 21-04-2016 IPR029060 PIN domain-like RAF_RS06720 2e59f98753392b425b172cb013f7f65e 135 PANTHER PTHR33653:SF1 1 135 1.1E-24 T 21-04-2016 RAF_RS06720 2e59f98753392b425b172cb013f7f65e 135 Pfam PF01850 PIN domain 3 121 3.8E-15 T 21-04-2016 IPR002716 PIN domain RAF_RS06720 2e59f98753392b425b172cb013f7f65e 135 PANTHER PTHR33653 1 135 1.1E-24 T 21-04-2016 RAF_RS05215 407186155b14815b6b18ff4251f1e967 70 SUPERFAMILY SSF50249 3 68 3.64E-20 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS05215 407186155b14815b6b18ff4251f1e967 70 SMART SM00357 6 70 4.6E-26 T 21-04-2016 IPR011129 Cold shock protein GO:0003676 RAF_RS05215 407186155b14815b6b18ff4251f1e967 70 PANTHER PTHR11544 1 68 6.6E-14 T 21-04-2016 RAF_RS05215 407186155b14815b6b18ff4251f1e967 70 PIRSF PIRSF002599 1 70 5.9E-20 T 21-04-2016 IPR012156 Cold shock, CspA GO:0003676 RAF_RS05215 407186155b14815b6b18ff4251f1e967 70 Gene3D G3DSA:2.40.50.140 6 68 5.4E-24 T 21-04-2016 IPR012340 Nucleic acid-binding, OB-fold RAF_RS05215 407186155b14815b6b18ff4251f1e967 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 21-04-2016 IPR019844 Cold-shock conserved site RAF_RS05215 407186155b14815b6b18ff4251f1e967 70 Pfam PF00313 'Cold-shock' DNA-binding domain 7 67 2.7E-22 T 21-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RAF_RS05215 407186155b14815b6b18ff4251f1e967 70 PRINTS PR00050 Cold shock protein signature 28 37 4.3E-11 T 21-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RAF_RS05215 407186155b14815b6b18ff4251f1e967 70 PRINTS PR00050 Cold shock protein signature 43 61 4.3E-11 T 21-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RAF_RS05215 407186155b14815b6b18ff4251f1e967 70 PRINTS PR00050 Cold shock protein signature 7 22 4.3E-11 T 21-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RAF_RS00075 716e6a0c9526ccc38c7549f24ed923e9 175 SUPERFAMILY SSF52540 17 135 5.97E-18 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00075 716e6a0c9526ccc38c7549f24ed923e9 175 Gene3D G3DSA:3.40.50.300 2 142 3.5E-52 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00075 716e6a0c9526ccc38c7549f24ed923e9 175 PANTHER PTHR33540:SF2 3 153 1.8E-36 T 21-04-2016 RAF_RS00075 716e6a0c9526ccc38c7549f24ed923e9 175 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 5 129 3.0E-30 T 21-04-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 RAF_RS00075 716e6a0c9526ccc38c7549f24ed923e9 175 PANTHER PTHR33540 3 153 1.8E-36 T 21-04-2016 RAF_RS00075 716e6a0c9526ccc38c7549f24ed923e9 175 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 5 124 7.8E-35 T 21-04-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 RAF_RS00665 4dcd2c0f79a9556de76fb90d890614c7 251 SUPERFAMILY SSF52540 8 235 4.97E-59 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00665 4dcd2c0f79a9556de76fb90d890614c7 251 Pfam PF00005 ABC transporter 23 169 4.7E-31 T 21-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAF_RS00665 4dcd2c0f79a9556de76fb90d890614c7 251 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 21-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAF_RS00665 4dcd2c0f79a9556de76fb90d890614c7 251 Gene3D G3DSA:3.40.50.300 8 241 5.7E-66 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00665 4dcd2c0f79a9556de76fb90d890614c7 251 PANTHER PTHR24220 9 250 1.3E-103 T 21-04-2016 RAF_RS00665 4dcd2c0f79a9556de76fb90d890614c7 251 PANTHER PTHR24220:SF567 9 250 1.3E-103 T 21-04-2016 RAF_RS00665 4dcd2c0f79a9556de76fb90d890614c7 251 SMART SM00382 32 219 1.3E-11 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS05890 2d4df4039a2e755e0d5ef7dfb9bc9a09 281 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 10 208 8.2E-23 T 21-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RAF_RS05890 2d4df4039a2e755e0d5ef7dfb9bc9a09 281 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 10 276 4.7E-69 T 21-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RAF_RS05890 2d4df4039a2e755e0d5ef7dfb9bc9a09 281 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 87 98 - T 21-04-2016 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RAF_RS05890 2d4df4039a2e755e0d5ef7dfb9bc9a09 281 PIRSF PIRSF005917 2 281 6.5E-90 T 21-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RAF_RS05890 2d4df4039a2e755e0d5ef7dfb9bc9a09 281 PANTHER PTHR21091 1 229 6.0E-66 T 21-04-2016 RAF_RS05890 2d4df4039a2e755e0d5ef7dfb9bc9a09 281 PANTHER PTHR21091:SF18 1 229 6.0E-66 T 21-04-2016 RAF_RS05890 2d4df4039a2e755e0d5ef7dfb9bc9a09 281 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 9 227 35.509 T 21-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RAF_RS05890 2d4df4039a2e755e0d5ef7dfb9bc9a09 281 Gene3D G3DSA:3.40.1010.10 10 117 4.3E-15 T 21-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 RAF_RS05890 2d4df4039a2e755e0d5ef7dfb9bc9a09 281 Gene3D G3DSA:3.30.950.10 118 228 4.4E-34 T 21-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 RAF_RS05890 2d4df4039a2e755e0d5ef7dfb9bc9a09 281 SUPERFAMILY SSF53790 8 225 2.88E-70 T 21-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 RAF_RS06760 bbfb95346a4b593fc08dcf425905cfe9 245 PANTHER PTHR11142:SF0 1 245 1.2E-82 T 21-04-2016 RAF_RS06760 bbfb95346a4b593fc08dcf425905cfe9 245 PIRSF PIRSF001430 1 245 2.7E-70 T 21-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAF_RS06760 bbfb95346a4b593fc08dcf425905cfe9 245 Pfam PF01416 tRNA pseudouridine synthase 8 104 9.1E-8 T 21-04-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAF_RS06760 bbfb95346a4b593fc08dcf425905cfe9 245 Pfam PF01416 tRNA pseudouridine synthase 144 245 3.3E-28 T 21-04-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAF_RS06760 bbfb95346a4b593fc08dcf425905cfe9 245 Gene3D G3DSA:3.30.70.580 1 106 7.9E-31 T 21-04-2016 IPR020094 Pseudouridine synthase I, TruA, N-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAF_RS06760 bbfb95346a4b593fc08dcf425905cfe9 245 Gene3D G3DSA:3.30.70.660 107 242 1.2E-47 T 21-04-2016 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAF_RS06760 bbfb95346a4b593fc08dcf425905cfe9 245 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 2 245 32.922 T 21-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAF_RS06760 bbfb95346a4b593fc08dcf425905cfe9 245 PANTHER PTHR11142 1 245 1.2E-82 T 21-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAF_RS06760 bbfb95346a4b593fc08dcf425905cfe9 245 SUPERFAMILY SSF55120 1 245 1.41E-82 T 21-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAF_RS06760 bbfb95346a4b593fc08dcf425905cfe9 245 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 4 239 3.5E-56 T 21-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAF_RS06090 9879d61f90d28f80f714062dfa783b0c 66 Pfam PF01783 Ribosomal L32p protein family 2 56 2.2E-21 T 21-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 RAF_RS06090 9879d61f90d28f80f714062dfa783b0c 66 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 55 19.34 T 21-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 RAF_RS06090 9879d61f90d28f80f714062dfa783b0c 66 SUPERFAMILY SSF57829 1 55 1.46E-19 T 21-04-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 RAF_RS06090 9879d61f90d28f80f714062dfa783b0c 66 PANTHER PTHR35534 1 61 9.3E-22 T 21-04-2016 RAF_RS06090 9879d61f90d28f80f714062dfa783b0c 66 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 55 1.1E-22 T 21-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 RAF_RS06980 ece5f9ce3e72eb722d3590f2d9599262 346 SUPERFAMILY SSF53800 6 324 9.32E-89 T 21-04-2016 RAF_RS06980 ece5f9ce3e72eb722d3590f2d9599262 346 TIGRFAM TIGR00109 hemH: ferrochelatase 6 313 3.0E-83 T 21-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 RAF_RS06980 ece5f9ce3e72eb722d3590f2d9599262 346 PANTHER PTHR11108 4 311 3.6E-95 T 21-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 RAF_RS06980 ece5f9ce3e72eb722d3590f2d9599262 346 Pfam PF00762 Ferrochelatase 9 312 1.0E-93 T 21-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 RAF_RS06980 ece5f9ce3e72eb722d3590f2d9599262 346 ProSitePatterns PS00534 Ferrochelatase signature. 187 205 - T 21-04-2016 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 RAF_RS06980 ece5f9ce3e72eb722d3590f2d9599262 346 Gene3D G3DSA:3.40.50.1400 7 197 4.8E-50 T 21-04-2016 RAF_RS06980 ece5f9ce3e72eb722d3590f2d9599262 346 Hamap MF_00323 Ferrochelatase [hemH]. 7 316 33.498 T 21-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 RAF_RS06980 ece5f9ce3e72eb722d3590f2d9599262 346 Gene3D G3DSA:3.40.50.1400 198 314 4.5E-37 T 21-04-2016 RAF_RS06920 5c6a87a2517c4d479b6222a2cdecdf70 247 SUPERFAMILY SSF55846 7 165 3.27E-51 T 21-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RAF_RS06920 5c6a87a2517c4d479b6222a2cdecdf70 247 Gene3D G3DSA:3.40.80.10 3 168 3.0E-58 T 21-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RAF_RS06920 5c6a87a2517c4d479b6222a2cdecdf70 247 SMART SM00644 6 149 5.7E-23 T 21-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RAF_RS06920 5c6a87a2517c4d479b6222a2cdecdf70 247 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 16 150 4.4E-22 T 21-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 RAF_RS06920 5c6a87a2517c4d479b6222a2cdecdf70 247 PANTHER PTHR30417:SF5 1 247 1.8E-81 T 21-04-2016 RAF_RS06920 5c6a87a2517c4d479b6222a2cdecdf70 247 Pfam PF01471 Putative peptidoglycan binding domain 181 235 4.0E-6 T 21-04-2016 IPR002477 Peptidoglycan binding-like RAF_RS06920 5c6a87a2517c4d479b6222a2cdecdf70 247 SUPERFAMILY SSF47090 177 242 5.1E-18 T 21-04-2016 IPR002477 Peptidoglycan binding-like RAF_RS06920 5c6a87a2517c4d479b6222a2cdecdf70 247 PANTHER PTHR30417 1 247 1.8E-81 T 21-04-2016 RAF_RS06350 f179fcb286eaacf623f3bde780024fbd 79 PIRSF PIRSF003113 1 79 5.2E-18 T 21-04-2016 IPR002634 BolA protein RAF_RS06350 f179fcb286eaacf623f3bde780024fbd 79 Gene3D G3DSA:3.30.70.1500 2 73 3.6E-17 T 21-04-2016 RAF_RS06350 f179fcb286eaacf623f3bde780024fbd 79 SUPERFAMILY SSF82657 3 78 1.1E-18 T 21-04-2016 IPR002634 BolA protein RAF_RS06350 f179fcb286eaacf623f3bde780024fbd 79 Pfam PF01722 BolA-like protein 27 78 3.8E-12 T 21-04-2016 IPR002634 BolA protein RAF_RS04765 34ac2c451b031dcaab66a44daa5979ed 118 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 57 71 - T 21-04-2016 IPR020539 Ribonuclease P, conserved site GO:0004526 RAF_RS04765 34ac2c451b031dcaab66a44daa5979ed 118 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 1 116 11.222 T 21-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 RAF_RS04765 34ac2c451b031dcaab66a44daa5979ed 118 Gene3D G3DSA:3.30.230.10 5 114 1.7E-20 T 21-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RAF_RS04765 34ac2c451b031dcaab66a44daa5979ed 118 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 4 116 1.1E-14 T 21-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 RAF_RS04765 34ac2c451b031dcaab66a44daa5979ed 118 SUPERFAMILY SSF54211 4 116 1.59E-16 T 21-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RAF_RS04765 34ac2c451b031dcaab66a44daa5979ed 118 Pfam PF00825 Ribonuclease P 5 115 3.8E-18 T 21-04-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 RAF_RS04710 d54efdf7f5a70ee16fce309070c910e5 79 SUPERFAMILY SSF81593 16 75 2.47E-5 T 21-04-2016 RAF_RS04710 d54efdf7f5a70ee16fce309070c910e5 79 Pfam PF05168 HEPN domain 14 76 1.2E-6 T 21-04-2016 IPR007842 HEPN domain RAF_RS04710 d54efdf7f5a70ee16fce309070c910e5 79 Gene3D G3DSA:1.20.120.330 11 76 5.1E-8 T 21-04-2016 RAF_RS04555 b8837a0c4e27342dad885f5228507b7e 141 PANTHER PTHR33909:SF1 13 141 2.6E-27 T 21-04-2016 RAF_RS04555 b8837a0c4e27342dad885f5228507b7e 141 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 34 117 5.0E-32 T 21-04-2016 IPR003849 Preprotein translocase YajC RAF_RS04555 b8837a0c4e27342dad885f5228507b7e 141 Pfam PF02699 Preprotein translocase subunit 37 113 7.1E-27 T 21-04-2016 IPR003849 Preprotein translocase YajC RAF_RS04555 b8837a0c4e27342dad885f5228507b7e 141 PANTHER PTHR33909 13 141 2.6E-27 T 21-04-2016 RAF_RS04555 b8837a0c4e27342dad885f5228507b7e 141 SMART SM01323 33 117 5.5E-37 T 21-04-2016 IPR003849 Preprotein translocase YajC RAF_RS04555 b8837a0c4e27342dad885f5228507b7e 141 PRINTS PR01853 Bacterial YajC preprotein translocase signature 35 55 1.6E-16 T 21-04-2016 IPR003849 Preprotein translocase YajC RAF_RS04555 b8837a0c4e27342dad885f5228507b7e 141 PRINTS PR01853 Bacterial YajC preprotein translocase signature 73 91 1.6E-16 T 21-04-2016 IPR003849 Preprotein translocase YajC RAF_RS01235 d3a603057b6be6eda3f24a195bf2cf41 497 Pfam PF13365 Trypsin-like peptidase domain 68 206 3.8E-18 T 21-04-2016 RAF_RS01235 d3a603057b6be6eda3f24a195bf2cf41 497 Gene3D G3DSA:2.40.10.10 125 234 1.6E-12 T 21-04-2016 RAF_RS01235 d3a603057b6be6eda3f24a195bf2cf41 497 Gene3D G3DSA:2.30.42.10 280 353 3.7E-11 T 21-04-2016 IPR001478 PDZ domain GO:0005515 RAF_RS01235 d3a603057b6be6eda3f24a195bf2cf41 497 PRINTS PR00834 HtrA/DegQ protease family signature 101 121 2.3E-12 T 21-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAF_RS01235 d3a603057b6be6eda3f24a195bf2cf41 497 PRINTS PR00834 HtrA/DegQ protease family signature 144 168 2.3E-12 T 21-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAF_RS01235 d3a603057b6be6eda3f24a195bf2cf41 497 PRINTS PR00834 HtrA/DegQ protease family signature 78 90 2.3E-12 T 21-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAF_RS01235 d3a603057b6be6eda3f24a195bf2cf41 497 PRINTS PR00834 HtrA/DegQ protease family signature 293 305 2.3E-12 T 21-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RAF_RS01235 d3a603057b6be6eda3f24a195bf2cf41 497 Gene3D G3DSA:2.40.10.10 33 124 1.6E-19 T 21-04-2016 RAF_RS01235 d3a603057b6be6eda3f24a195bf2cf41 497 ProDom PD208586 PROTEASE SHOCK HYDROLASE SERINE HEAT 3.4.21.- FAMILY PROTEASE HTRA/DEGQ/DEGS EC:3.4.21.- 308 497 2.0E-106 T 21-04-2016 RAF_RS01235 d3a603057b6be6eda3f24a195bf2cf41 497 PANTHER PTHR22939 41 339 1.3E-33 T 21-04-2016 RAF_RS01235 d3a603057b6be6eda3f24a195bf2cf41 497 SUPERFAMILY SSF50494 17 243 5.54E-33 T 21-04-2016 IPR009003 Peptidase S1, PA clan RAF_RS01235 d3a603057b6be6eda3f24a195bf2cf41 497 Pfam PF13180 PDZ domain 277 344 1.7E-8 T 21-04-2016 IPR001478 PDZ domain GO:0005515 RAF_RS01235 d3a603057b6be6eda3f24a195bf2cf41 497 SUPERFAMILY SSF50156 279 349 1.17E-10 T 21-04-2016 IPR001478 PDZ domain GO:0005515 RAF_RS04320 8cade500c2e3f80f40ca0f1d1a7c3131 88 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 33 78 8.1E-10 T 21-04-2016 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 RAF_RS01515 10ce9d593b9913545b34755f15c5cc27 282 Pfam PF00535 Glycosyl transferase family 2 10 95 6.9E-15 T 21-04-2016 IPR001173 Glycosyltransferase 2-like RAF_RS01515 10ce9d593b9913545b34755f15c5cc27 282 Gene3D G3DSA:3.90.550.10 8 166 3.0E-9 T 21-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RAF_RS01515 10ce9d593b9913545b34755f15c5cc27 282 PANTHER PTHR10859 6 141 1.6E-20 T 21-04-2016 RAF_RS01515 10ce9d593b9913545b34755f15c5cc27 282 SUPERFAMILY SSF53448 8 231 4.5E-20 T 21-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RAF_RS01515 10ce9d593b9913545b34755f15c5cc27 282 PANTHER PTHR10859:SF99 6 141 1.6E-20 T 21-04-2016 RAF_RS06280 1ec6bc5c2205c320abc83828fc00996d 142 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 25 41 1.1E-12 T 21-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 RAF_RS06280 1ec6bc5c2205c320abc83828fc00996d 142 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 49 65 1.1E-12 T 21-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 RAF_RS06280 1ec6bc5c2205c320abc83828fc00996d 142 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 119 137 1.1E-12 T 21-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 RAF_RS06280 1ec6bc5c2205c320abc83828fc00996d 142 PANTHER PTHR30295 2 141 6.8E-47 T 21-04-2016 RAF_RS06280 1ec6bc5c2205c320abc83828fc00996d 142 Gene3D G3DSA:1.20.1260.10 2 140 4.4E-49 T 21-04-2016 IPR012347 Ferritin-related RAF_RS06280 1ec6bc5c2205c320abc83828fc00996d 142 SUPERFAMILY SSF47240 1 139 1.74E-38 T 21-04-2016 IPR009078 Ferritin-like superfamily RAF_RS06280 1ec6bc5c2205c320abc83828fc00996d 142 ProSitePatterns PS00818 Dps protein family signature 1. 25 41 - T 21-04-2016 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 RAF_RS06280 1ec6bc5c2205c320abc83828fc00996d 142 PIRSF PIRSF005900 1 142 4.8E-42 T 21-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 RAF_RS06280 1ec6bc5c2205c320abc83828fc00996d 142 PANTHER PTHR30295:SF6 2 141 6.8E-47 T 21-04-2016 RAF_RS06280 1ec6bc5c2205c320abc83828fc00996d 142 Pfam PF00210 Ferritin-like domain 5 139 6.9E-28 T 21-04-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 RAF_RS03995 1f0e6e1fd9265764dfd75ed209c3a406 253 Gene3D G3DSA:3.30.1270.10 214 247 1.2E-37 T 21-04-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 RAF_RS03995 1f0e6e1fd9265764dfd75ed209c3a406 253 Gene3D G3DSA:3.30.1270.10 83 135 1.2E-37 T 21-04-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 RAF_RS03995 1f0e6e1fd9265764dfd75ed209c3a406 253 PANTHER PTHR12532 1 243 5.5E-99 T 21-04-2016 IPR002876 Transcriptional regulator TACO1-like RAF_RS03995 1f0e6e1fd9265764dfd75ed209c3a406 253 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 241 32.711 T 21-04-2016 IPR002876 Transcriptional regulator TACO1-like RAF_RS03995 1f0e6e1fd9265764dfd75ed209c3a406 253 PANTHER PTHR12532:SF0 1 243 5.5E-99 T 21-04-2016 RAF_RS03995 1f0e6e1fd9265764dfd75ed209c3a406 253 Gene3D G3DSA:3.30.70.980 136 204 1.7E-16 T 21-04-2016 IPR026564 Transcriptional regulator TACO1-like, domain 3 RAF_RS03995 1f0e6e1fd9265764dfd75ed209c3a406 253 Pfam PF01709 Transcriptional regulator 5 238 5.7E-83 T 21-04-2016 IPR002876 Transcriptional regulator TACO1-like RAF_RS03995 1f0e6e1fd9265764dfd75ed209c3a406 253 SUPERFAMILY SSF75625 5 247 4.71E-84 T 21-04-2016 IPR029072 YebC-like RAF_RS03995 1f0e6e1fd9265764dfd75ed209c3a406 253 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 240 1.7E-97 T 21-04-2016 IPR002876 Transcriptional regulator TACO1-like RAF_RS03995 1f0e6e1fd9265764dfd75ed209c3a406 253 Gene3D G3DSA:1.10.10.200 1 80 3.0E-30 T 21-04-2016 IPR017856 Integrase, N-terminal zinc-binding domain-like RAF_RS02375 149f965fadcc6ce848112b19e4c961bf 604 PANTHER PTHR22916 15 230 8.5E-46 T 21-04-2016 RAF_RS02375 149f965fadcc6ce848112b19e4c961bf 604 SUPERFAMILY SSF53448 294 498 4.22E-48 T 21-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RAF_RS02375 149f965fadcc6ce848112b19e4c961bf 604 SUPERFAMILY SSF53448 15 232 1.77E-51 T 21-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RAF_RS02375 149f965fadcc6ce848112b19e4c961bf 604 Pfam PF00535 Glycosyl transferase family 2 296 413 8.6E-31 T 21-04-2016 IPR001173 Glycosyltransferase 2-like RAF_RS02375 149f965fadcc6ce848112b19e4c961bf 604 Pfam PF00535 Glycosyl transferase family 2 17 131 1.2E-26 T 21-04-2016 IPR001173 Glycosyltransferase 2-like RAF_RS02375 149f965fadcc6ce848112b19e4c961bf 604 Gene3D G3DSA:3.90.550.10 15 239 3.6E-50 T 21-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RAF_RS02375 149f965fadcc6ce848112b19e4c961bf 604 Gene3D G3DSA:3.90.550.10 294 494 5.3E-46 T 21-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RAF_RS06175 dc42c655b668e687028ecb72f7e1c679 301 Pfam PF03741 Integral membrane protein TerC family 65 267 1.9E-50 T 21-04-2016 IPR005496 Integral membrane protein TerC GO:0016021 RAF_RS06175 dc42c655b668e687028ecb72f7e1c679 301 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 2 296 4.4E-104 T 21-04-2016 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 RAF_RS06175 dc42c655b668e687028ecb72f7e1c679 301 PANTHER PTHR30238:SF0 1 301 1.6E-114 T 21-04-2016 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 RAF_RS06175 dc42c655b668e687028ecb72f7e1c679 301 PANTHER PTHR30238 1 301 1.6E-114 T 21-04-2016 RAF_RS01520 04e79b2dfba07848c15fdc02cf3bb344 412 Gene3D G3DSA:3.30.830.10 5 213 3.6E-55 T 21-04-2016 IPR011237 Peptidase M16 domain GO:0046872 RAF_RS01520 04e79b2dfba07848c15fdc02cf3bb344 412 SUPERFAMILY SSF63411 224 407 5.74E-40 T 21-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RAF_RS01520 04e79b2dfba07848c15fdc02cf3bb344 412 Pfam PF05193 Peptidase M16 inactive domain 169 341 8.0E-39 T 21-04-2016 IPR007863 Peptidase M16, C-terminal RAF_RS01520 04e79b2dfba07848c15fdc02cf3bb344 412 Pfam PF00675 Insulinase (Peptidase family M16) 16 162 1.1E-41 T 21-04-2016 IPR011765 Peptidase M16, N-terminal RAF_RS01520 04e79b2dfba07848c15fdc02cf3bb344 412 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 36 59 - T 21-04-2016 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 RAF_RS01520 04e79b2dfba07848c15fdc02cf3bb344 412 Gene3D G3DSA:3.30.830.10 222 407 2.6E-48 T 21-04-2016 IPR011237 Peptidase M16 domain GO:0046872 RAF_RS01520 04e79b2dfba07848c15fdc02cf3bb344 412 PANTHER PTHR11851 7 406 2.2E-123 T 21-04-2016 RAF_RS01520 04e79b2dfba07848c15fdc02cf3bb344 412 SUPERFAMILY SSF63411 6 208 1.28E-56 T 21-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RAF_RS02675 e349f8f3c207b27a6f73375a6a74490b 507 PANTHER PTHR31187:SF1 20 507 8.5E-98 T 21-04-2016 RAF_RS02675 e349f8f3c207b27a6f73375a6a74490b 507 Pfam PF03219 TLC ATP/ADP transporter 13 501 6.2E-188 T 21-04-2016 IPR004667 ADP/ATP carrier protein GO:0005471|GO:0005524|GO:0006810|GO:0016021 RAF_RS02675 e349f8f3c207b27a6f73375a6a74490b 507 TIGRFAM TIGR00769 AAA: ADP/ATP carrier protein family 26 501 1.5E-123 T 21-04-2016 IPR004667 ADP/ATP carrier protein GO:0005471|GO:0005524|GO:0006810|GO:0016021 RAF_RS02675 e349f8f3c207b27a6f73375a6a74490b 507 PANTHER PTHR31187 20 507 8.5E-98 T 21-04-2016 IPR004667 ADP/ATP carrier protein GO:0005471|GO:0005524|GO:0006810|GO:0016021 RAF_RS02130 f7a7264a01668220c66295ad3d5d5848 326 SUPERFAMILY SSF53448 110 288 1.86E-6 T 21-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RAF_RS01020 4746e46753d38c9d765f724a0a9b8c9d 242 Gene3D G3DSA:3.40.1160.10 6 241 1.2E-79 T 21-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RAF_RS01020 4746e46753d38c9d765f724a0a9b8c9d 242 Pfam PF00696 Amino acid kinase family 11 220 5.2E-27 T 21-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RAF_RS01020 4746e46753d38c9d765f724a0a9b8c9d 242 SUPERFAMILY SSF53633 8 240 4.45E-67 T 21-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RAF_RS01020 4746e46753d38c9d765f724a0a9b8c9d 242 PANTHER PTHR21499:SF23 6 242 3.3E-103 T 21-04-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 RAF_RS01020 4746e46753d38c9d765f724a0a9b8c9d 242 Hamap MF_01220_B Uridylate kinase [pyrH]. 8 241 42.542 T 21-04-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 RAF_RS01020 4746e46753d38c9d765f724a0a9b8c9d 242 PANTHER PTHR21499 6 242 3.3E-103 T 21-04-2016 RAF_RS01020 4746e46753d38c9d765f724a0a9b8c9d 242 PIRSF PIRSF005650 5 242 3.9E-95 T 21-04-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 RAF_RS01020 4746e46753d38c9d765f724a0a9b8c9d 242 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 10 240 8.0E-100 T 21-04-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 RAF_RS02765 d0964b9627313746141fd142a385926b 320 Pfam PF03330 Lytic transglycolase 166 259 6.2E-24 T 21-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain RAF_RS02765 d0964b9627313746141fd142a385926b 320 TIGRFAM TIGR03776 RPE5: rickettsial palindromic element RPE5 domain 47 85 1.2E-13 T 21-04-2016 IPR022438 Rickettsia palindromic element RPE5 RAF_RS02765 d0964b9627313746141fd142a385926b 320 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 13 47 1.5E-13 T 21-04-2016 IPR005728 Rickettsial palindromic element RAF_RS02765 d0964b9627313746141fd142a385926b 320 SUPERFAMILY SSF50685 169 262 3.24E-10 T 21-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain RAF_RS02765 d0964b9627313746141fd142a385926b 320 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 169 305 2.0E-40 T 21-04-2016 IPR012997 Rare lipoprotein A RAF_RS02765 d0964b9627313746141fd142a385926b 320 PANTHER PTHR34183:SF1 144 262 4.3E-43 T 21-04-2016 RAF_RS02765 d0964b9627313746141fd142a385926b 320 PANTHER PTHR34183 144 262 4.3E-43 T 21-04-2016 RAF_RS01115 d7459758e4cf16f5b9be93930be04be3 264 Pfam PF13177 DNA polymerase III, delta subunit 49 147 1.3E-25 T 21-04-2016 RAF_RS01115 d7459758e4cf16f5b9be93930be04be3 264 PANTHER PTHR11669 52 147 4.4E-22 T 21-04-2016 RAF_RS01115 d7459758e4cf16f5b9be93930be04be3 264 SUPERFAMILY SSF52540 67 181 1.42E-24 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS01115 d7459758e4cf16f5b9be93930be04be3 264 PANTHER PTHR11669:SF8 52 147 4.4E-22 T 21-04-2016 RAF_RS01115 d7459758e4cf16f5b9be93930be04be3 264 Gene3D G3DSA:3.40.50.300 50 147 2.2E-24 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS03220 206f5ada3d4902a97bf64def79186f07 343 PANTHER PTHR10314:SF36 9 323 1.8E-112 T 21-04-2016 RAF_RS03220 206f5ada3d4902a97bf64def79186f07 343 Gene3D G3DSA:3.40.50.1100 76 324 2.3E-49 T 21-04-2016 RAF_RS03220 206f5ada3d4902a97bf64def79186f07 343 PANTHER PTHR10314 9 323 1.8E-112 T 21-04-2016 RAF_RS03220 206f5ada3d4902a97bf64def79186f07 343 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 23 308 1.1E-58 T 21-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RAF_RS03220 206f5ada3d4902a97bf64def79186f07 343 SUPERFAMILY SSF53686 9 318 1.57E-70 T 21-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme RAF_RS03395 3a708873ad0bf991009f037c2cae11db 511 TIGRFAM TIGR00769 AAA: ADP/ATP carrier protein family 29 503 3.0E-133 T 21-04-2016 IPR004667 ADP/ATP carrier protein GO:0005471|GO:0005524|GO:0006810|GO:0016021 RAF_RS03395 3a708873ad0bf991009f037c2cae11db 511 Pfam PF03219 TLC ATP/ADP transporter 14 503 1.8E-191 T 21-04-2016 IPR004667 ADP/ATP carrier protein GO:0005471|GO:0005524|GO:0006810|GO:0016021 RAF_RS03395 3a708873ad0bf991009f037c2cae11db 511 PANTHER PTHR31187:SF1 21 508 2.1E-111 T 21-04-2016 RAF_RS03395 3a708873ad0bf991009f037c2cae11db 511 PANTHER PTHR31187 21 508 2.1E-111 T 21-04-2016 IPR004667 ADP/ATP carrier protein GO:0005471|GO:0005524|GO:0006810|GO:0016021 RAF_RS04340 5769bd1e9162c777ce945f0ec2d6c27a 593 Gene3D G3DSA:3.90.1310.10 125 242 3.2E-30 T 21-04-2016 RAF_RS04340 5769bd1e9162c777ce945f0ec2d6c27a 593 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 14 590 1.5E-191 T 21-04-2016 IPR017790 Penicillin-binding protein 2 GO:0016020 UniPathway: UPA00219 RAF_RS04340 5769bd1e9162c777ce945f0ec2d6c27a 593 PANTHER PTHR30627:SF2 1 585 1.9E-170 T 21-04-2016 RAF_RS04340 5769bd1e9162c777ce945f0ec2d6c27a 593 SUPERFAMILY SSF56601 244 590 3.17E-89 T 21-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RAF_RS04340 5769bd1e9162c777ce945f0ec2d6c27a 593 PANTHER PTHR30627 1 585 1.9E-170 T 21-04-2016 RAF_RS04340 5769bd1e9162c777ce945f0ec2d6c27a 593 SUPERFAMILY SSF56519 51 242 9.42E-45 T 21-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 RAF_RS04340 5769bd1e9162c777ce945f0ec2d6c27a 593 Gene3D G3DSA:3.40.710.10 244 591 1.8E-100 T 21-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RAF_RS04340 5769bd1e9162c777ce945f0ec2d6c27a 593 Pfam PF03717 Penicillin-binding Protein dimerisation domain 59 229 8.2E-39 T 21-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 RAF_RS04340 5769bd1e9162c777ce945f0ec2d6c27a 593 Pfam PF00905 Penicillin binding protein transpeptidase domain 262 585 3.0E-72 T 21-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RAF_RS05045 353d3d3b68d680b0c1bdc89d9f09e24c 63 Pfam PF00327 Ribosomal protein L30p/L7e 8 57 7.4E-16 T 21-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain RAF_RS05045 353d3d3b68d680b0c1bdc89d9f09e24c 63 PANTHER PTHR15892 7 62 1.9E-18 T 21-04-2016 RAF_RS05045 353d3d3b68d680b0c1bdc89d9f09e24c 63 PIRSF PIRSF002211 1 63 1.5E-24 T 21-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 RAF_RS05045 353d3d3b68d680b0c1bdc89d9f09e24c 63 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 8 62 3.1E-25 T 21-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 RAF_RS05045 353d3d3b68d680b0c1bdc89d9f09e24c 63 Gene3D G3DSA:3.30.1390.20 6 62 8.1E-26 T 21-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain RAF_RS05045 353d3d3b68d680b0c1bdc89d9f09e24c 63 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 5 62 17.941 T 21-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 RAF_RS05045 353d3d3b68d680b0c1bdc89d9f09e24c 63 SUPERFAMILY SSF55129 8 61 1.96E-17 T 21-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain RAF_RS05045 353d3d3b68d680b0c1bdc89d9f09e24c 63 PANTHER PTHR15892:SF2 7 62 1.9E-18 T 21-04-2016 RAF_RS00350 4b6045ac8027f77f25ea49ec77c2c212 478 Gene3D G3DSA:3.40.50.620 3 179 1.1E-12 T 21-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS00350 4b6045ac8027f77f25ea49ec77c2c212 478 SUPERFAMILY SSF52402 4 201 1.07E-43 T 21-04-2016 RAF_RS00350 4b6045ac8027f77f25ea49ec77c2c212 478 Pfam PF01171 PP-loop family 22 199 3.4E-57 T 21-04-2016 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal RAF_RS00350 4b6045ac8027f77f25ea49ec77c2c212 478 PANTHER PTHR11807 19 199 4.3E-50 T 21-04-2016 RAF_RS00350 4b6045ac8027f77f25ea49ec77c2c212 478 PANTHER PTHR11807:SF2 19 199 4.3E-50 T 21-04-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RAF_RS00350 4b6045ac8027f77f25ea49ec77c2c212 478 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 21 202 7.1E-55 T 21-04-2016 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RAF_RS00350 4b6045ac8027f77f25ea49ec77c2c212 478 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 3 357 19.163 T 21-04-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RAF_RS00350 4b6045ac8027f77f25ea49ec77c2c212 478 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 209 256 2.5E-23 T 21-04-2016 IPR005728 Rickettsial palindromic element RAF_RS03595 b9f3dd3b0b7c5990d6a0834fbbf2e444 210 PANTHER PTHR37937:SF1 26 198 1.2E-19 T 21-04-2016 RAF_RS03595 b9f3dd3b0b7c5990d6a0834fbbf2e444 210 PANTHER PTHR37937 26 198 1.2E-19 T 21-04-2016 RAF_RS03595 b9f3dd3b0b7c5990d6a0834fbbf2e444 210 SUPERFAMILY SSF52540 12 204 1.81E-25 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS03595 b9f3dd3b0b7c5990d6a0834fbbf2e444 210 Pfam PF10412 Type IV secretion-system coupling protein DNA-binding domain 9 206 2.3E-69 T 21-04-2016 IPR019476 Type IV secretion system coupling protein TraD, DNA-binding domain RAF_RS03595 b9f3dd3b0b7c5990d6a0834fbbf2e444 210 Gene3D G3DSA:3.40.50.300 14 201 3.0E-31 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00555 f2a513826e754d7abc028deb6b0fc9e7 294 Pfam PF00892 EamA-like transporter family 10 141 3.0E-21 T 21-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RAF_RS00555 f2a513826e754d7abc028deb6b0fc9e7 294 Pfam PF00892 EamA-like transporter family 152 280 2.6E-12 T 21-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 RAF_RS00555 f2a513826e754d7abc028deb6b0fc9e7 294 SUPERFAMILY SSF103481 44 143 1.07E-14 T 21-04-2016 RAF_RS00555 f2a513826e754d7abc028deb6b0fc9e7 294 PANTHER PTHR22911:SF70 9 292 2.6E-123 T 21-04-2016 RAF_RS00555 f2a513826e754d7abc028deb6b0fc9e7 294 PANTHER PTHR22911 9 292 2.6E-123 T 21-04-2016 RAF_RS00555 f2a513826e754d7abc028deb6b0fc9e7 294 SUPERFAMILY SSF103481 187 283 2.22E-10 T 21-04-2016 RAF_RS00725 a6e6620d31cde952237a5078f719ba94 307 SUPERFAMILY SSF53633 24 302 8.2E-29 T 21-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RAF_RS00725 a6e6620d31cde952237a5078f719ba94 307 Gene3D G3DSA:3.40.1160.10 44 302 3.1E-26 T 21-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 RAF_RS00725 a6e6620d31cde952237a5078f719ba94 307 PIRSF PIRSF000728 19 307 2.4E-63 T 21-04-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 RAF_RS00725 a6e6620d31cde952237a5078f719ba94 307 PANTHER PTHR23342 47 233 3.1E-15 T 21-04-2016 RAF_RS06910 6282c424999acbecd8040be02184e90b 171 ProDom PD207074 TRANSMEMBRANE MEMBRANE UNCHARACTERIZED RC1356 RP875 1 171 1.0E-94 T 21-04-2016 RAF_RS01955 f41e7c81fa461eea3dd0f920d0969a75 366 PANTHER PTHR30474:SF1 1 361 8.4E-130 T 21-04-2016 IPR011923 Rod shape-determining protein RodA GO:0008360|GO:0016021 RAF_RS01955 f41e7c81fa461eea3dd0f920d0969a75 366 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 14 362 1.1E-126 T 21-04-2016 IPR011923 Rod shape-determining protein RodA GO:0008360|GO:0016021 RAF_RS01955 f41e7c81fa461eea3dd0f920d0969a75 366 Pfam PF01098 Cell cycle protein 16 361 3.4E-98 T 21-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 RAF_RS01955 f41e7c81fa461eea3dd0f920d0969a75 366 PANTHER PTHR30474 1 361 8.4E-130 T 21-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 RAF_RS02365 32af79e6620764737645ae5760d1d460 445 SUPERFAMILY SSF53756 71 409 1.02E-7 T 21-04-2016 RAF_RS02965 377564d7a016dc77debd89a4486d0161 338 Gene3D G3DSA:3.40.50.2000 161 313 6.9E-27 T 21-04-2016 RAF_RS02965 377564d7a016dc77debd89a4486d0161 338 Pfam PF00534 Glycosyl transferases group 1 151 314 1.7E-43 T 21-04-2016 IPR001296 Glycosyl transferase, family 1 RAF_RS02965 377564d7a016dc77debd89a4486d0161 338 Pfam PF13439 Glycosyltransferase Family 4 13 150 1.7E-8 T 21-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain RAF_RS02965 377564d7a016dc77debd89a4486d0161 338 PANTHER PTHR12526 13 336 6.9E-52 T 21-04-2016 RAF_RS02965 377564d7a016dc77debd89a4486d0161 338 SUPERFAMILY SSF53756 7 336 1.68E-67 T 21-04-2016 RAF_RS02095 2f83c7b12df39546a79bf189cd92b566 144 SUPERFAMILY SSF89623 4 143 4.05E-48 T 21-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 RAF_RS02095 2f83c7b12df39546a79bf189cd92b566 144 TIGRFAM TIGR01120 rpiB: ribose 5-phosphate isomerase B 6 143 8.2E-46 T 21-04-2016 IPR004785 Ribose 5-phosphate isomerase B GO:0004751|GO:0006098 RAF_RS02095 2f83c7b12df39546a79bf189cd92b566 144 Pfam PF02502 Ribose/Galactose Isomerase 6 143 9.5E-47 T 21-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 RAF_RS02095 2f83c7b12df39546a79bf189cd92b566 144 TIGRFAM TIGR00689 rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/LacA/LacB family 6 144 6.1E-62 T 21-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 RAF_RS02095 2f83c7b12df39546a79bf189cd92b566 144 PANTHER PTHR30345 1 143 2.7E-48 T 21-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 RAF_RS02095 2f83c7b12df39546a79bf189cd92b566 144 PIRSF PIRSF005384 4 144 6.8E-53 T 21-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 RAF_RS02095 2f83c7b12df39546a79bf189cd92b566 144 Gene3D G3DSA:3.40.1400.10 1 143 2.1E-53 T 21-04-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 RAF_RS05495 69fbe93a08a92ccd7d2cdacb2786ff73 221 Pfam PF00005 ABC transporter 25 168 8.2E-31 T 21-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAF_RS05495 69fbe93a08a92ccd7d2cdacb2786ff73 221 PANTHER PTHR24220:SF111 7 214 4.9E-90 T 21-04-2016 RAF_RS05495 69fbe93a08a92ccd7d2cdacb2786ff73 221 SUPERFAMILY SSF52540 6 208 1.24E-62 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05495 69fbe93a08a92ccd7d2cdacb2786ff73 221 SMART SM00382 34 219 2.8E-9 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS05495 69fbe93a08a92ccd7d2cdacb2786ff73 221 Gene3D G3DSA:3.40.50.300 2 214 4.6E-60 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05495 69fbe93a08a92ccd7d2cdacb2786ff73 221 PANTHER PTHR24220 7 214 4.9E-90 T 21-04-2016 RAF_RS05495 69fbe93a08a92ccd7d2cdacb2786ff73 221 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 21-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAF_RS03315 32c103024c095faaf784f6b1dc534594 607 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 21 85 3.9E-13 T 21-04-2016 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 RAF_RS03315 32c103024c095faaf784f6b1dc534594 607 Pfam PF02867 Ribonucleotide reductase, barrel domain 418 563 3.3E-35 T 21-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RAF_RS03315 32c103024c095faaf784f6b1dc534594 607 Pfam PF02867 Ribonucleotide reductase, barrel domain 89 408 9.1E-75 T 21-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RAF_RS03315 32c103024c095faaf784f6b1dc534594 607 PANTHER PTHR11573 24 607 1.9E-223 T 21-04-2016 RAF_RS03315 32c103024c095faaf784f6b1dc534594 607 Gene3D G3DSA:3.20.70.20 523 565 2.1E-62 T 21-04-2016 RAF_RS03315 32c103024c095faaf784f6b1dc534594 607 Gene3D G3DSA:3.20.70.20 9 462 2.1E-62 T 21-04-2016 RAF_RS03315 32c103024c095faaf784f6b1dc534594 607 SUPERFAMILY SSF51998 497 568 6.71E-134 T 21-04-2016 RAF_RS03315 32c103024c095faaf784f6b1dc534594 607 SUPERFAMILY SSF51998 87 466 6.71E-134 T 21-04-2016 RAF_RS03315 32c103024c095faaf784f6b1dc534594 607 PRINTS PR01183 Ribonucleotide reductase large chain signature 381 404 5.5E-18 T 21-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RAF_RS03315 32c103024c095faaf784f6b1dc534594 607 PRINTS PR01183 Ribonucleotide reductase large chain signature 162 181 5.5E-18 T 21-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RAF_RS03315 32c103024c095faaf784f6b1dc534594 607 PRINTS PR01183 Ribonucleotide reductase large chain signature 353 375 5.5E-18 T 21-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RAF_RS03315 32c103024c095faaf784f6b1dc534594 607 PRINTS PR01183 Ribonucleotide reductase large chain signature 274 285 5.5E-18 T 21-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RAF_RS03315 32c103024c095faaf784f6b1dc534594 607 SUPERFAMILY SSF48168 12 84 1.44E-12 T 21-04-2016 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 RAF_RS02560 ffa25955f04296b1b6a5b69612a4b8df 279 PANTHER PTHR32196:SF27 4 272 7.6E-46 T 21-04-2016 RAF_RS02560 ffa25955f04296b1b6a5b69612a4b8df 279 PANTHER PTHR32196 4 272 7.6E-46 T 21-04-2016 RAF_RS02560 ffa25955f04296b1b6a5b69612a4b8df 279 Pfam PF02653 Branched-chain amino acid transport system / permease component 5 270 6.5E-17 T 21-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 RAF_RS01900 f1dbc38d1b201a08408b15ca993ed9fd 368 SMART SM00937 83 193 6.9E-51 T 21-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 RAF_RS01900 f1dbc38d1b201a08408b15ca993ed9fd 368 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 243 259 - T 21-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RAF_RS01900 f1dbc38d1b201a08408b15ca993ed9fd 368 SUPERFAMILY SSF75620 30 363 1.31E-126 T 21-04-2016 RAF_RS01900 f1dbc38d1b201a08408b15ca993ed9fd 368 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 3 361 1.1E-151 T 21-04-2016 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 RAF_RS01900 f1dbc38d1b201a08408b15ca993ed9fd 368 PANTHER PTHR11075:SF6 1 363 2.2E-153 T 21-04-2016 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 RAF_RS01900 f1dbc38d1b201a08408b15ca993ed9fd 368 Hamap MF_00094 Peptide chain release factor 2 [prfB]. 1 364 39.198 T 21-04-2016 IPR020853 Peptide chain release factor 2, bacterial GO:0005737|GO:0006415|GO:0016149 RAF_RS01900 f1dbc38d1b201a08408b15ca993ed9fd 368 PANTHER PTHR11075 1 363 2.2E-153 T 21-04-2016 RAF_RS01900 f1dbc38d1b201a08408b15ca993ed9fd 368 Gene3D G3DSA:1.20.58.410 1 112 8.6E-26 T 21-04-2016 RAF_RS01900 f1dbc38d1b201a08408b15ca993ed9fd 368 Gene3D G3DSA:3.30.160.20 226 303 3.0E-37 T 21-04-2016 IPR014720 Double-stranded RNA-binding domain RAF_RS01900 f1dbc38d1b201a08408b15ca993ed9fd 368 Pfam PF03462 PCRF domain 30 217 1.7E-53 T 21-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 RAF_RS01900 f1dbc38d1b201a08408b15ca993ed9fd 368 Pfam PF00472 RF-1 domain 227 336 9.2E-40 T 21-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RAF_RS00735 8e14133c164af505ee2a282970d62a84 805 Pfam PF03135 CagE, TrbE, VirB family, component of type IV transporter system 195 399 1.4E-70 T 21-04-2016 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain GO:0005524 RAF_RS00735 8e14133c164af505ee2a282970d62a84 805 Gene3D G3DSA:3.40.50.300 426 523 1.7E-14 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00735 8e14133c164af505ee2a282970d62a84 805 Gene3D G3DSA:3.40.50.300 647 712 1.7E-14 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00735 8e14133c164af505ee2a282970d62a84 805 Gene3D G3DSA:3.40.50.300 559 569 1.7E-14 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00735 8e14133c164af505ee2a282970d62a84 805 TIGRFAM TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family 14 801 9.8E-293 T 21-04-2016 IPR004346 CagE, TrbE, VirB component of type IV transporter system GO:0005524 RAF_RS00735 8e14133c164af505ee2a282970d62a84 805 SUPERFAMILY SSF52540 421 718 5.0E-41 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00735 8e14133c164af505ee2a282970d62a84 805 SMART SM00382 450 708 4.3E-6 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS04720 c1e40b26287189607d16803bcb67ed94 365 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 88 106 8.6E-35 T 21-04-2016 IPR006073 GTP binding domain GO:0005525 RAF_RS04720 c1e40b26287189607d16803bcb67ed94 365 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 71 86 8.6E-35 T 21-04-2016 IPR006073 GTP binding domain GO:0005525 RAF_RS04720 c1e40b26287189607d16803bcb67ed94 365 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 27 45 8.6E-35 T 21-04-2016 IPR006073 GTP binding domain GO:0005525 RAF_RS04720 c1e40b26287189607d16803bcb67ed94 365 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 8.6E-35 T 21-04-2016 IPR006073 GTP binding domain GO:0005525 RAF_RS04720 c1e40b26287189607d16803bcb67ed94 365 Pfam PF06071 Protein of unknown function (DUF933) 281 364 3.8E-38 T 21-04-2016 IPR013029 Domain of unknown function DUF933 RAF_RS04720 c1e40b26287189607d16803bcb67ed94 365 Gene3D G3DSA:3.10.20.30 269 365 1.4E-45 T 21-04-2016 IPR012675 Beta-grasp domain RAF_RS04720 c1e40b26287189607d16803bcb67ed94 365 SUPERFAMILY SSF52540 3 301 1.17E-76 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04720 c1e40b26287189607d16803bcb67ed94 365 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 365 41.814 T 21-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 RAF_RS04720 c1e40b26287189607d16803bcb67ed94 365 SUPERFAMILY SSF81271 281 362 1.77E-34 T 21-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 RAF_RS04720 c1e40b26287189607d16803bcb67ed94 365 PANTHER PTHR23305:SF12 1 365 4.7E-193 T 21-04-2016 RAF_RS04720 c1e40b26287189607d16803bcb67ed94 365 Gene3D G3DSA:3.40.50.300 4 131 1.5E-43 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04720 c1e40b26287189607d16803bcb67ed94 365 Gene3D G3DSA:3.40.50.300 201 268 1.5E-43 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS04720 c1e40b26287189607d16803bcb67ed94 365 PIRSF PIRSF006641 1 365 6.9E-161 T 21-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 RAF_RS04720 c1e40b26287189607d16803bcb67ed94 365 PANTHER PTHR23305 1 365 4.7E-193 T 21-04-2016 RAF_RS04720 c1e40b26287189607d16803bcb67ed94 365 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 365 1.2E-142 T 21-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 RAF_RS04720 c1e40b26287189607d16803bcb67ed94 365 Gene3D G3DSA:1.10.150.300 132 200 6.6E-21 T 21-04-2016 IPR023192 TGS-like domain RAF_RS04720 c1e40b26287189607d16803bcb67ed94 365 Pfam PF01926 50S ribosome-binding GTPase 5 121 4.2E-23 T 21-04-2016 IPR006073 GTP binding domain GO:0005525 RAF_RS05245 85d0948a1df48464ad7e0774dcb62c49 444 Pfam PF13742 OB-fold nucleic acid binding domain 14 106 1.6E-24 T 21-04-2016 IPR025824 OB-fold nucleic acid binding domain GO:0003676 RAF_RS05245 85d0948a1df48464ad7e0774dcb62c49 444 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 11 444 26.188 T 21-04-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 RAF_RS05245 85d0948a1df48464ad7e0774dcb62c49 444 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 15 441 1.5E-116 T 21-04-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 RAF_RS05245 85d0948a1df48464ad7e0774dcb62c49 444 PANTHER PTHR30008 6 442 2.9E-121 T 21-04-2016 RAF_RS05245 85d0948a1df48464ad7e0774dcb62c49 444 Pfam PF02601 Exonuclease VII, large subunit 136 441 1.1E-81 T 21-04-2016 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 RAF_RS05245 85d0948a1df48464ad7e0774dcb62c49 444 PANTHER PTHR30008:SF0 6 442 2.9E-121 T 21-04-2016 RAF_RS03605 e8766df0680f399b0ef1cd73fc7c0e1c 284 PANTHER PTHR24182 21 27 4.2E-31 T 21-04-2016 RAF_RS03605 e8766df0680f399b0ef1cd73fc7c0e1c 284 PANTHER PTHR24182 132 261 4.2E-31 T 21-04-2016 RAF_RS03605 e8766df0680f399b0ef1cd73fc7c0e1c 284 SUPERFAMILY SSF48403 132 264 2.32E-35 T 21-04-2016 IPR020683 Ankyrin repeat-containing domain RAF_RS03605 e8766df0680f399b0ef1cd73fc7c0e1c 284 Pfam PF12796 Ankyrin repeats (3 copies) 172 263 1.2E-15 T 21-04-2016 IPR020683 Ankyrin repeat-containing domain RAF_RS03605 e8766df0680f399b0ef1cd73fc7c0e1c 284 PRINTS PR01415 Ankyrin repeat signature 168 183 1.5E-5 T 21-04-2016 IPR002110 Ankyrin repeat GO:0005515 RAF_RS03605 e8766df0680f399b0ef1cd73fc7c0e1c 284 PRINTS PR01415 Ankyrin repeat signature 216 230 1.5E-5 T 21-04-2016 IPR002110 Ankyrin repeat GO:0005515 RAF_RS03605 e8766df0680f399b0ef1cd73fc7c0e1c 284 PANTHER PTHR24182:SF13 132 261 4.2E-31 T 21-04-2016 RAF_RS03605 e8766df0680f399b0ef1cd73fc7c0e1c 284 PANTHER PTHR24182:SF13 21 27 4.2E-31 T 21-04-2016 RAF_RS03605 e8766df0680f399b0ef1cd73fc7c0e1c 284 Gene3D G3DSA:1.25.40.20 129 263 1.9E-36 T 21-04-2016 IPR020683 Ankyrin repeat-containing domain RAF_RS03605 e8766df0680f399b0ef1cd73fc7c0e1c 284 SMART SM00248 233 262 290.0 T 21-04-2016 IPR002110 Ankyrin repeat GO:0005515 RAF_RS03605 e8766df0680f399b0ef1cd73fc7c0e1c 284 SMART SM00248 134 163 220.0 T 21-04-2016 IPR002110 Ankyrin repeat GO:0005515 RAF_RS03605 e8766df0680f399b0ef1cd73fc7c0e1c 284 SMART SM00248 200 229 1.9E-5 T 21-04-2016 IPR002110 Ankyrin repeat GO:0005515 RAF_RS03605 e8766df0680f399b0ef1cd73fc7c0e1c 284 SMART SM00248 167 196 5.8E-5 T 21-04-2016 IPR002110 Ankyrin repeat GO:0005515 RAF_RS04860 696b43268919258c06ef072f92b81498 75 Gene3D G3DSA:1.25.40.10 2 63 3.2E-9 T 21-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RAF_RS04860 696b43268919258c06ef072f92b81498 75 Pfam PF12895 Anaphase-promoting complex, cyclosome, subunit 3 2 52 3.9E-8 T 21-04-2016 RAF_RS04860 696b43268919258c06ef072f92b81498 75 SUPERFAMILY SSF48452 2 65 1.1E-10 T 21-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RAF_RS05225 0ea206815304cfc8b5e3276e754aca6d 301 TIGRFAM TIGR03774 RPE2: rickettsial palindromic element RPE2 domain 110 142 7.5E-17 T 21-04-2016 IPR022436 Rickettsia palindromic element RPE2 RAF_RS05225 0ea206815304cfc8b5e3276e754aca6d 301 SUPERFAMILY SSF53335 15 300 5.26E-74 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS05225 0ea206815304cfc8b5e3276e754aca6d 301 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 15 300 4.6E-81 T 21-04-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 RAF_RS05225 0ea206815304cfc8b5e3276e754aca6d 301 PANTHER PTHR11727 140 301 2.6E-87 T 21-04-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm RAF_RS05225 0ea206815304cfc8b5e3276e754aca6d 301 PANTHER PTHR11727 2 119 2.6E-87 T 21-04-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm RAF_RS05225 0ea206815304cfc8b5e3276e754aca6d 301 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 14 301 50.362 T 21-04-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 RAF_RS05225 0ea206815304cfc8b5e3276e754aca6d 301 Pfam PF00398 Ribosomal RNA adenine dimethylase 18 301 5.2E-56 T 21-04-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm RAF_RS05225 0ea206815304cfc8b5e3276e754aca6d 301 Gene3D G3DSA:3.40.50.150 3 102 1.0E-64 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS05225 0ea206815304cfc8b5e3276e754aca6d 301 Gene3D G3DSA:3.40.50.150 137 234 1.0E-64 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS05225 0ea206815304cfc8b5e3276e754aca6d 301 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 46 74 - T 21-04-2016 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 RAF_RS05225 0ea206815304cfc8b5e3276e754aca6d 301 Gene3D G3DSA:1.10.8.100 243 301 1.4E-14 T 21-04-2016 IPR023165 rRNA adenine dimethylase-like RAF_RS05225 0ea206815304cfc8b5e3276e754aca6d 301 SMART SM00650 30 234 4.5E-74 T 21-04-2016 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 RAF_RS00360 ca1d2dd143cef9422d9178c7862baf55 65 Gene3D G3DSA:3.40.50.150 5 59 9.4E-16 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS00360 ca1d2dd143cef9422d9178c7862baf55 65 ProSitePatterns PS00094 C-5 cytosine-specific DNA methylases active site. 37 49 - T 21-04-2016 IPR018117 DNA methylase, C-5 cytosine-specific, active site KEGG: 00270+2.1.1.37 RAF_RS00360 ca1d2dd143cef9422d9178c7862baf55 65 Pfam PF00145 C-5 cytosine-specific DNA methylase 5 59 8.2E-19 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS00360 ca1d2dd143cef9422d9178c7862baf55 65 SUPERFAMILY SSF53335 5 59 2.16E-14 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS02285 091eb89bd237f0bcfa854c8c29fba5d6 183 Pfam PF05299 M61 glycyl aminopeptidase 7 72 5.6E-8 T 21-04-2016 IPR007963 Peptidase M61, catalytic domain RAF_RS02285 091eb89bd237f0bcfa854c8c29fba5d6 183 SUPERFAMILY SSF55486 2 164 4.25E-12 T 21-04-2016 RAF_RS05200 cb3fd3b873cc6877905b2b578372ccab 190 PIRSF PIRSF036773 1 190 2.4E-69 T 21-04-2016 RAF_RS05200 cb3fd3b873cc6877905b2b578372ccab 190 PANTHER PTHR11178 1 188 1.3E-86 T 21-04-2016 RAF_RS05200 cb3fd3b873cc6877905b2b578372ccab 190 Pfam PF01106 NifU-like domain 117 183 1.3E-26 T 21-04-2016 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 RAF_RS05200 cb3fd3b873cc6877905b2b578372ccab 190 SMART SM00932 3 90 2.0E-41 T 21-04-2016 IPR014824 Scaffold protein Nfu/NifU, N-terminal RAF_RS05200 cb3fd3b873cc6877905b2b578372ccab 190 PANTHER PTHR11178:SF1 1 188 1.3E-86 T 21-04-2016 IPR017065 NFU1 iron-sulfur cluster scaffold homologue GO:0016226 RAF_RS05200 cb3fd3b873cc6877905b2b578372ccab 190 Pfam PF08712 Scaffold protein Nfu/NifU N terminal 3 90 1.8E-28 T 21-04-2016 IPR014824 Scaffold protein Nfu/NifU, N-terminal RAF_RS05200 cb3fd3b873cc6877905b2b578372ccab 190 Gene3D G3DSA:3.30.1370.70 1 90 5.3E-31 T 21-04-2016 IPR014824 Scaffold protein Nfu/NifU, N-terminal RAF_RS05200 cb3fd3b873cc6877905b2b578372ccab 190 SUPERFAMILY SSF117916 109 188 5.89E-26 T 21-04-2016 RAF_RS05200 cb3fd3b873cc6877905b2b578372ccab 190 SUPERFAMILY SSF110836 1 92 5.62E-27 T 21-04-2016 IPR014824 Scaffold protein Nfu/NifU, N-terminal RAF_RS05200 cb3fd3b873cc6877905b2b578372ccab 190 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 125 175 5.0E-24 T 21-04-2016 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 RAF_RS03275 b9285488f1bfe8b6a19faecf5aed9089 75 PANTHER PTHR30451 1 75 6.3E-12 T 21-04-2016 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 RAF_RS03275 b9285488f1bfe8b6a19faecf5aed9089 75 PANTHER PTHR30451:SF5 1 75 6.3E-12 T 21-04-2016 RAF_RS06480 7e1ad17bf07edafed783111499f04d69 2093 SMART SM00869 1810 2083 4.0E-40 T 21-04-2016 IPR005546 Autotransporter beta-domain RAF_RS06480 7e1ad17bf07edafed783111499f04d69 2093 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 1616 2093 1.6E-84 T 21-04-2016 IPR006315 Outer membrane autotransporter barrel GO:0019867 RAF_RS06480 7e1ad17bf07edafed783111499f04d69 2093 Pfam PF03797 Autotransporter beta-domain 1809 2079 3.0E-49 T 21-04-2016 IPR005546 Autotransporter beta-domain RAF_RS06480 7e1ad17bf07edafed783111499f04d69 2093 Gene3D G3DSA:2.40.128.130 1808 2093 3.2E-44 T 21-04-2016 IPR005546 Autotransporter beta-domain RAF_RS06480 7e1ad17bf07edafed783111499f04d69 2093 SUPERFAMILY SSF103515 1772 2093 7.06E-51 T 21-04-2016 IPR005546 Autotransporter beta-domain RAF_RS03665 dcd88aa6546f50943cccedc14a4664d1 342 SUPERFAMILY SSF51395 30 339 1.38E-75 T 21-04-2016 RAF_RS03665 dcd88aa6546f50943cccedc14a4664d1 342 Hamap MF_00354 Isopentenyl-diphosphate delta-isomerase [fni]. 8 342 39.478 T 21-04-2016 IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent GO:0004452|GO:0005737|GO:0008299|GO:0010181 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922 RAF_RS03665 dcd88aa6546f50943cccedc14a4664d1 342 PANTHER PTHR10578:SF3 248 340 3.6E-110 T 21-04-2016 IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent GO:0004452|GO:0005737|GO:0008299|GO:0010181 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922 RAF_RS03665 dcd88aa6546f50943cccedc14a4664d1 342 PANTHER PTHR10578:SF3 30 226 3.6E-110 T 21-04-2016 IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent GO:0004452|GO:0005737|GO:0008299|GO:0010181 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922 RAF_RS03665 dcd88aa6546f50943cccedc14a4664d1 342 PIRSF PIRSF003314 5 342 5.1E-123 T 21-04-2016 IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent GO:0004452|GO:0005737|GO:0008299|GO:0010181 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922 RAF_RS03665 dcd88aa6546f50943cccedc14a4664d1 342 Pfam PF01070 FMN-dependent dehydrogenase 29 101 6.7E-9 T 21-04-2016 IPR000262 FMN-dependent dehydrogenase GO:0016491 RAF_RS03665 dcd88aa6546f50943cccedc14a4664d1 342 Pfam PF01070 FMN-dependent dehydrogenase 170 340 9.0E-15 T 21-04-2016 IPR000262 FMN-dependent dehydrogenase GO:0016491 RAF_RS03665 dcd88aa6546f50943cccedc14a4664d1 342 Gene3D G3DSA:3.20.20.70 29 340 4.6E-119 T 21-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RAF_RS03665 dcd88aa6546f50943cccedc14a4664d1 342 PANTHER PTHR10578 248 340 3.6E-110 T 21-04-2016 RAF_RS03665 dcd88aa6546f50943cccedc14a4664d1 342 PANTHER PTHR10578 30 226 3.6E-110 T 21-04-2016 RAF_RS03665 dcd88aa6546f50943cccedc14a4664d1 342 TIGRFAM TIGR02151 IPP_isom_2: isopentenyl-diphosphate delta-isomerase, type 2 10 340 3.8E-133 T 21-04-2016 IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent GO:0004452|GO:0005737|GO:0008299|GO:0010181 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922 RAF_RS04790 432a67f337fa54b53832016ccf8d5425 319 SUPERFAMILY SSF144083 254 317 8.76E-21 T 21-04-2016 RAF_RS04790 432a67f337fa54b53832016ccf8d5425 319 Pfam PF01544 CorA-like Mg2+ transporter protein 22 315 7.4E-49 T 21-04-2016 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 RAF_RS04790 432a67f337fa54b53832016ccf8d5425 319 PANTHER PTHR21535:SF37 20 319 1.5E-74 T 21-04-2016 RAF_RS04790 432a67f337fa54b53832016ccf8d5425 319 PANTHER PTHR21535 20 319 1.5E-74 T 21-04-2016 RAF_RS04790 432a67f337fa54b53832016ccf8d5425 319 SUPERFAMILY SSF143865 2 256 2.35E-29 T 21-04-2016 RAF_RS04790 432a67f337fa54b53832016ccf8d5425 319 Gene3D G3DSA:1.20.58.340 243 319 1.2E-27 T 21-04-2016 RAF_RS06100 3ddb804a2548cd85231b691443e0b0be 303 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 31 302 58.193 T 21-04-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 RAF_RS06100 3ddb804a2548cd85231b691443e0b0be 303 Gene3D G3DSA:1.20.120.140 3 81 4.2E-16 T 21-04-2016 RAF_RS06100 3ddb804a2548cd85231b691443e0b0be 303 SMART SM00382 100 292 1.0E-6 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS06100 3ddb804a2548cd85231b691443e0b0be 303 Pfam PF00448 SRP54-type protein, GTPase domain 102 301 2.4E-73 T 21-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RAF_RS06100 3ddb804a2548cd85231b691443e0b0be 303 Gene3D G3DSA:3.40.50.300 95 302 1.1E-73 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06100 3ddb804a2548cd85231b691443e0b0be 303 PANTHER PTHR11564:SF16 1 300 1.5E-104 T 21-04-2016 RAF_RS06100 3ddb804a2548cd85231b691443e0b0be 303 SUPERFAMILY SSF47364 3 80 1.67E-15 T 21-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 RAF_RS06100 3ddb804a2548cd85231b691443e0b0be 303 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 33 301 1.5E-102 T 21-04-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 RAF_RS06100 3ddb804a2548cd85231b691443e0b0be 303 SMART SM00963 8 87 1.4E-12 T 21-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 RAF_RS06100 3ddb804a2548cd85231b691443e0b0be 303 SMART SM00962 101 302 1.3E-104 T 21-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RAF_RS06100 3ddb804a2548cd85231b691443e0b0be 303 SUPERFAMILY SSF52540 99 301 1.83E-47 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06100 3ddb804a2548cd85231b691443e0b0be 303 PANTHER PTHR11564 1 300 1.5E-104 T 21-04-2016 RAF_RS06100 3ddb804a2548cd85231b691443e0b0be 303 Pfam PF02881 SRP54-type protein, helical bundle domain 17 80 3.5E-7 T 21-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 RAF_RS06100 3ddb804a2548cd85231b691443e0b0be 303 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 275 288 - T 21-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 RAF_RS01015 51f9fe2f394b9845b0c7bd8bc3eb70c3 186 PANTHER PTHR20982 6 186 1.6E-70 T 21-04-2016 IPR002661 Ribosome recycling factor GO:0006412 RAF_RS01015 51f9fe2f394b9845b0c7bd8bc3eb70c3 186 Gene3D G3DSA:1.10.132.20 68 186 8.0E-41 T 21-04-2016 IPR023584 Ribosome recycling factor domain RAF_RS01015 51f9fe2f394b9845b0c7bd8bc3eb70c3 186 TIGRFAM TIGR00496 frr: ribosome recycling factor 11 186 3.0E-68 T 21-04-2016 IPR002661 Ribosome recycling factor GO:0006412 RAF_RS01015 51f9fe2f394b9845b0c7bd8bc3eb70c3 186 Pfam PF01765 Ribosome recycling factor 22 184 3.8E-59 T 21-04-2016 IPR023584 Ribosome recycling factor domain RAF_RS01015 51f9fe2f394b9845b0c7bd8bc3eb70c3 186 SUPERFAMILY SSF55194 5 185 7.33E-67 T 21-04-2016 IPR023584 Ribosome recycling factor domain RAF_RS01015 51f9fe2f394b9845b0c7bd8bc3eb70c3 186 Hamap MF_00040 Ribosome-recycling factor [frr]. 4 186 26.138 T 21-04-2016 IPR002661 Ribosome recycling factor GO:0006412 RAF_RS03540 7f9befc2e95469955e02b240d88755ce 587 PANTHER PTHR30255 6 583 2.5E-203 T 21-04-2016 RAF_RS03540 7f9befc2e95469955e02b240d88755ce 587 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 32 583 1.1E-180 T 21-04-2016 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 RAF_RS03540 7f9befc2e95469955e02b240d88755ce 587 Pfam PF02272 DHHA1 domain 386 451 4.2E-13 T 21-04-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7 RAF_RS03540 7f9befc2e95469955e02b240d88755ce 587 Pfam PF01368 DHH family 86 220 2.3E-11 T 21-04-2016 IPR001667 DDH domain RAF_RS03540 7f9befc2e95469955e02b240d88755ce 587 PANTHER PTHR30255:SF2 6 583 2.5E-203 T 21-04-2016 RAF_RS03540 7f9befc2e95469955e02b240d88755ce 587 SUPERFAMILY SSF64182 61 455 9.68E-111 T 21-04-2016 RAF_RS00205 3b401bf42b22e0eeba1b54a938147c58 72 SUPERFAMILY SSF55083 2 69 4.05E-9 T 21-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RAF_RS00205 3b401bf42b22e0eeba1b54a938147c58 72 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 3 70 1.8E-8 T 21-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RAF_RS00205 3b401bf42b22e0eeba1b54a938147c58 72 Gene3D G3DSA:3.30.70.560 2 70 2.1E-9 T 21-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 RAF_RS01505 9becaac0e47f1a2374cf8a95a7575234 80 SUPERFAMILY SSF143120 1 77 2.22E-19 T 21-04-2016 RAF_RS01505 9becaac0e47f1a2374cf8a95a7575234 80 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 64 3.6E-13 T 21-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RAF_RS01505 9becaac0e47f1a2374cf8a95a7575234 80 PANTHER PTHR33713 1 69 2.2E-13 T 21-04-2016 RAF_RS01505 9becaac0e47f1a2374cf8a95a7575234 80 PANTHER PTHR33713:SF6 1 69 2.2E-13 T 21-04-2016 RAF_RS01505 9becaac0e47f1a2374cf8a95a7575234 80 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 7 54 5.3E-6 T 21-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RAF_RS04370 df8e3cab7e27cf65f1a2d2977b068196 149 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 3 133 7.0E-13 T 21-04-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 RAF_RS04370 df8e3cab7e27cf65f1a2d2977b068196 149 SUPERFAMILY SSF89447 1 139 4.29E-36 T 21-04-2016 RAF_RS04370 df8e3cab7e27cf65f1a2d2977b068196 149 PANTHER PTHR34701 4 136 1.8E-24 T 21-04-2016 RAF_RS04370 df8e3cab7e27cf65f1a2d2977b068196 149 Pfam PF02381 MraZ protein, putative antitoxin-like 79 146 2.7E-17 T 21-04-2016 IPR020603 MraZ domain RAF_RS04370 df8e3cab7e27cf65f1a2d2977b068196 149 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 149 33.521 T 21-04-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 RAF_RS04460 976a45fd1d50f060da165111d09f3617 80 Gene3D G3DSA:1.25.40.20 3 44 8.9E-4 T 21-04-2016 IPR020683 Ankyrin repeat-containing domain RAF_RS06945 9b0bb6c3651dfed1bcea2597967d39a0 66 SUPERFAMILY SSF51735 3 65 4.26E-14 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS06945 9b0bb6c3651dfed1bcea2597967d39a0 66 Gene3D G3DSA:3.40.50.720 2 65 7.1E-16 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS06945 9b0bb6c3651dfed1bcea2597967d39a0 66 PANTHER PTHR24322 3 65 4.2E-15 T 21-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RAF_RS06945 9b0bb6c3651dfed1bcea2597967d39a0 66 PANTHER PTHR24322:SF513 3 65 4.2E-15 T 21-04-2016 RAF_RS06945 9b0bb6c3651dfed1bcea2597967d39a0 66 Pfam PF00106 short chain dehydrogenase 2 65 1.3E-13 T 21-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR RAF_RS06510 b5a5367b1c3f665ab3384cdd035b3818 122 Pfam PF04002 RadC-like JAB domain 13 115 1.1E-33 T 21-04-2016 IPR025657 RadC-like JAB domain RAF_RS06510 b5a5367b1c3f665ab3384cdd035b3818 122 PANTHER PTHR30471 1 113 1.3E-34 T 21-04-2016 RAF_RS06510 b5a5367b1c3f665ab3384cdd035b3818 122 Gene3D G3DSA:3.40.140.10 12 115 5.5E-35 T 21-04-2016 RAF_RS05455 a63d5fdbbbb385b14299c95464fbd9b6 183 Pfam PF13302 Acetyltransferase (GNAT) domain 19 157 8.9E-25 T 21-04-2016 IPR000182 GNAT domain GO:0008080 RAF_RS05455 a63d5fdbbbb385b14299c95464fbd9b6 183 SUPERFAMILY SSF55729 9 181 6.97E-42 T 21-04-2016 IPR016181 Acyl-CoA N-acyltransferase RAF_RS05455 a63d5fdbbbb385b14299c95464fbd9b6 183 Gene3D G3DSA:3.40.630.30 10 181 2.2E-41 T 21-04-2016 IPR016181 Acyl-CoA N-acyltransferase RAF_RS05455 a63d5fdbbbb385b14299c95464fbd9b6 183 PANTHER PTHR13256 19 180 1.9E-39 T 21-04-2016 RAF_RS05790 3b224b8798abf05d924d55ef8bdcaee1 123 SUPERFAMILY SSF55811 7 114 9.66E-13 T 21-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RAF_RS05790 3b224b8798abf05d924d55ef8bdcaee1 123 Gene3D G3DSA:3.90.79.10 2 116 2.1E-12 T 21-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 RAF_RS05790 3b224b8798abf05d924d55ef8bdcaee1 123 Pfam PF00293 NUDIX domain 6 102 4.7E-8 T 21-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 RAF_RS06075 d925cc007e2950478da92aa964e4acb7 155 SUPERFAMILY SSF103088 43 151 8.63E-33 T 21-04-2016 IPR006665 OmpA-like domain RAF_RS06075 d925cc007e2950478da92aa964e4acb7 155 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 51 152 6.1E-41 T 21-04-2016 IPR014169 Peptidoglycan-associated lipoprotein GO:0009279 RAF_RS06075 d925cc007e2950478da92aa964e4acb7 155 Gene3D G3DSA:3.30.1330.60 49 152 7.5E-32 T 21-04-2016 IPR006665 OmpA-like domain RAF_RS06075 d925cc007e2950478da92aa964e4acb7 155 Pfam PF00691 OmpA family 53 147 1.4E-22 T 21-04-2016 IPR006665 OmpA-like domain RAF_RS06075 d925cc007e2950478da92aa964e4acb7 155 PANTHER PTHR30128:SF18 19 154 5.4E-47 T 21-04-2016 RAF_RS06075 d925cc007e2950478da92aa964e4acb7 155 PANTHER PTHR30128 19 154 5.4E-47 T 21-04-2016 RAF_RS06075 d925cc007e2950478da92aa964e4acb7 155 PRINTS PR01021 OMPA domain signature 53 75 1.92E-15 T 21-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RAF_RS06075 d925cc007e2950478da92aa964e4acb7 155 PRINTS PR01021 OMPA domain signature 98 114 1.92E-15 T 21-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RAF_RS06075 d925cc007e2950478da92aa964e4acb7 155 PRINTS PR01021 OMPA domain signature 83 98 1.92E-15 T 21-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RAF_RS04735 adaf8557ffe742e7b13df4a037a41331 185 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 108 118 - T 21-04-2016 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 RAF_RS04735 adaf8557ffe742e7b13df4a037a41331 185 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 1 178 36.15 T 21-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RAF_RS04735 adaf8557ffe742e7b13df4a037a41331 185 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 14 27 - T 21-04-2016 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 RAF_RS04735 adaf8557ffe742e7b13df4a037a41331 185 PANTHER PTHR17224 1 166 1.8E-66 T 21-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RAF_RS04735 adaf8557ffe742e7b13df4a037a41331 185 Gene3D G3DSA:3.40.50.1470 1 184 1.1E-67 T 21-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RAF_RS04735 adaf8557ffe742e7b13df4a037a41331 185 SUPERFAMILY SSF53178 1 184 9.16E-66 T 21-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RAF_RS04735 adaf8557ffe742e7b13df4a037a41331 185 PANTHER PTHR17224:SF1 1 166 1.8E-66 T 21-04-2016 RAF_RS04735 adaf8557ffe742e7b13df4a037a41331 185 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 1 180 3.3E-61 T 21-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RAF_RS04735 adaf8557ffe742e7b13df4a037a41331 185 Pfam PF01195 Peptidyl-tRNA hydrolase 3 183 5.0E-54 T 21-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RAF_RS06205 f30812ff4821bcadaee5112459c1220e 104 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 5 104 18.843 T 21-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 RAF_RS06205 f30812ff4821bcadaee5112459c1220e 104 PANTHER PTHR11434 6 102 1.1E-37 T 21-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 RAF_RS06205 f30812ff4821bcadaee5112459c1220e 104 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 10 99 2.2E-23 T 21-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 RAF_RS03705 8c72c58c867cd2fd2e368a4403c59ea1 290 ProDom PD205440 TRANSMEMBRANE MEMBRANE RP489 1 288 4.0E-137 T 21-04-2016 RAF_RS03705 8c72c58c867cd2fd2e368a4403c59ea1 290 Pfam PF06691 Protein of unknown function (DUF1189) 17 277 1.7E-14 T 21-04-2016 IPR009574 Protein of unknown function DUF1189 RAF_RS05440 0a6cd569b58b6ba092b620d16e10ef82 105 Pfam PF13781 DoxX-like family 2 96 1.0E-20 T 21-04-2016 IPR025695 DoxX-like family RAF_RS00150 0e056e82be7194521a766b309afd05b1 74 SUPERFAMILY SSF81333 4 73 1.96E-17 T 21-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 RAF_RS00150 0e056e82be7194521a766b309afd05b1 74 PRINTS PR00124 ATP synthase C subunit signature 9 28 1.8E-19 T 21-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 RAF_RS00150 0e056e82be7194521a766b309afd05b1 74 PRINTS PR00124 ATP synthase C subunit signature 47 72 1.8E-19 T 21-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 RAF_RS00150 0e056e82be7194521a766b309afd05b1 74 PRINTS PR00124 ATP synthase C subunit signature 30 45 1.8E-19 T 21-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 RAF_RS00150 0e056e82be7194521a766b309afd05b1 74 PANTHER PTHR10031 1 73 1.6E-18 T 21-04-2016 RAF_RS00150 0e056e82be7194521a766b309afd05b1 74 Gene3D G3DSA:1.20.20.10 7 73 9.4E-21 T 21-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 RAF_RS00150 0e056e82be7194521a766b309afd05b1 74 Pfam PF00137 ATP synthase subunit C 9 71 1.1E-10 T 21-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 RAF_RS00150 0e056e82be7194521a766b309afd05b1 74 ProSitePatterns PS00605 ATP synthase c subunit signature. 37 58 - T 21-04-2016 IPR020537 ATPase, F0 complex, subunit C, DCCD-binding site RAF_RS00150 0e056e82be7194521a766b309afd05b1 74 Hamap MF_01396 ATP synthase subunit c [atpH]. 7 74 13.462 T 21-04-2016 RAF_RS01965 de00dbc0b4cda5d531bd5d6b71c49820 505 Pfam PF00361 Proton-conducting membrane transporter 68 340 5.2E-15 T 21-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RAF_RS02405 0bd92ced20529a67c1e5386751c678c6 205 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 205 30.037 T 21-04-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 RAF_RS02405 0bd92ced20529a67c1e5386751c678c6 205 SMART SM00363 94 158 2.2E-16 T 21-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RAF_RS02405 0bd92ced20529a67c1e5386751c678c6 205 Gene3D G3DSA:1.10.1050.10 3 96 9.0E-35 T 21-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 RAF_RS02405 0bd92ced20529a67c1e5386751c678c6 205 PANTHER PTHR11831:SF4 1 205 5.4E-70 T 21-04-2016 RAF_RS02405 0bd92ced20529a67c1e5386751c678c6 205 ProSitePatterns PS00632 Ribosomal protein S4 signature. 92 116 - T 21-04-2016 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 RAF_RS02405 0bd92ced20529a67c1e5386751c678c6 205 Gene3D G3DSA:3.10.290.10 97 192 1.6E-24 T 21-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RAF_RS02405 0bd92ced20529a67c1e5386751c678c6 205 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 6 93 5.3E-22 T 21-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 RAF_RS02405 0bd92ced20529a67c1e5386751c678c6 205 SMART SM01390 3 93 5.7E-35 T 21-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 RAF_RS02405 0bd92ced20529a67c1e5386751c678c6 205 SUPERFAMILY SSF55174 4 205 6.41E-56 T 21-04-2016 RAF_RS02405 0bd92ced20529a67c1e5386751c678c6 205 PANTHER PTHR11831 1 205 5.4E-70 T 21-04-2016 IPR022801 Ribosomal protein S4/S9 RAF_RS02405 0bd92ced20529a67c1e5386751c678c6 205 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 205 3.6E-77 T 21-04-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 RAF_RS02405 0bd92ced20529a67c1e5386751c678c6 205 Pfam PF01479 S4 domain 95 141 8.9E-17 T 21-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RAF_RS02225 6ba92afdf431f0570abb2aaaadcdda3c 182 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 9 181 39.694 T 21-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 RAF_RS02225 6ba92afdf431f0570abb2aaaadcdda3c 182 Pfam PF00227 Proteasome subunit 8 179 2.9E-26 T 21-04-2016 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: REACT_11045|Reactome: REACT_13|Reactome: REACT_13635|Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_383|Reactome: REACT_578|Reactome: REACT_6185|Reactome: REACT_6850 RAF_RS02225 6ba92afdf431f0570abb2aaaadcdda3c 182 PANTHER PTHR32194 2 179 1.5E-99 T 21-04-2016 RAF_RS02225 6ba92afdf431f0570abb2aaaadcdda3c 182 PIRSF PIRSF039093 3 182 3.0E-78 T 21-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 RAF_RS02225 6ba92afdf431f0570abb2aaaadcdda3c 182 SUPERFAMILY SSF56235 7 180 1.42E-56 T 21-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RAF_RS02225 6ba92afdf431f0570abb2aaaadcdda3c 182 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 10 180 8.3E-78 T 21-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 RAF_RS02225 6ba92afdf431f0570abb2aaaadcdda3c 182 Gene3D G3DSA:3.60.20.10 10 181 1.2E-75 T 21-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal RAF_RS00045 b50ed5e94ac7046e9776d13d295ab7c9 145 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 3 141 7.5E-55 T 21-04-2016 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 RAF_RS00045 b50ed5e94ac7046e9776d13d295ab7c9 145 PANTHER PTHR30272 2 145 1.4E-66 T 21-04-2016 RAF_RS00045 b50ed5e94ac7046e9776d13d295ab7c9 145 SUPERFAMILY SSF54637 2 141 3.74E-47 T 21-04-2016 IPR029069 HotDog domain RAF_RS00045 b50ed5e94ac7046e9776d13d295ab7c9 145 Pfam PF07977 FabA-like domain 12 135 5.6E-34 T 21-04-2016 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 RAF_RS00045 b50ed5e94ac7046e9776d13d295ab7c9 145 Gene3D G3DSA:3.10.129.10 2 143 2.1E-54 T 21-04-2016 IPR029069 HotDog domain RAF_RS00045 b50ed5e94ac7046e9776d13d295ab7c9 145 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 3 143 33.866 T 21-04-2016 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 RAF_RS03515 db78b7510a8d74087b7b64a40e9df731 109 Pfam PF10097 Predicted membrane protein (DUF2335) 41 89 5.2E-18 T 21-04-2016 IPR019284 Xylella phage Xfas53, Orf42 RAF_RS01220 97f59acd9bd0c2bfa2fd0ae89051118d 42 SUPERFAMILY SSF140376 2 36 5.62E-10 T 21-04-2016 RAF_RS04655 e35994864383c7c72941f8a1e7bf95a4 87 Gene3D G3DSA:1.10.150.250 6 83 2.5E-24 T 21-04-2016 IPR005631 Flavinator of succinate dehydrogenase RAF_RS04655 e35994864383c7c72941f8a1e7bf95a4 87 SUPERFAMILY SSF109910 8 83 8.11E-22 T 21-04-2016 IPR005631 Flavinator of succinate dehydrogenase RAF_RS04655 e35994864383c7c72941f8a1e7bf95a4 87 Pfam PF03937 Flavinator of succinate dehydrogenase 11 81 1.7E-20 T 21-04-2016 IPR005631 Flavinator of succinate dehydrogenase RAF_RS04655 e35994864383c7c72941f8a1e7bf95a4 87 PANTHER PTHR12469:SF2 13 86 5.0E-21 T 21-04-2016 RAF_RS04655 e35994864383c7c72941f8a1e7bf95a4 87 PANTHER PTHR12469 13 86 5.0E-21 T 21-04-2016 RAF_RS00145 0ca621b5d2233b6dd2b74882f01c0a40 157 Pfam PF02326 Plant ATP synthase F0 2 76 2.5E-11 T 21-04-2016 IPR003319 ATP synthase YMF19-like, N-terminal RAF_RS03965 d7087272e386c91a7bae42407f550da4 233 Pfam PF12762 ISXO2-like transposase domain 50 198 9.8E-41 T 21-04-2016 IPR024445 ISXO2-like transposase domain RAF_RS03965 d7087272e386c91a7bae42407f550da4 233 SMART SM01126 50 198 4.6E-51 T 21-04-2016 IPR024445 ISXO2-like transposase domain RAF_RS06330 1cfc688cca5340be20dd007042e05e27 117 Pfam PF12784 PD-(D/E)XK nuclease family transposase 1 116 8.2E-23 T 21-04-2016 RAF_RS05115 070026bfc634f70054aff658e2d09d1f 92 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 7.1E-21 T 21-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RAF_RS05115 070026bfc634f70054aff658e2d09d1f 92 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 7.1E-21 T 21-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RAF_RS05115 070026bfc634f70054aff658e2d09d1f 92 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 7.1E-21 T 21-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RAF_RS05115 070026bfc634f70054aff658e2d09d1f 92 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 91 6.9E-44 T 21-04-2016 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 RAF_RS05115 070026bfc634f70054aff658e2d09d1f 92 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 21-04-2016 IPR020934 Ribosomal protein S19 conserved site GO:0003723 RAF_RS05115 070026bfc634f70054aff658e2d09d1f 92 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 24.083 T 21-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RAF_RS05115 070026bfc634f70054aff658e2d09d1f 92 PIRSF PIRSF002144 1 92 2.0E-32 T 21-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RAF_RS05115 070026bfc634f70054aff658e2d09d1f 92 Pfam PF00203 Ribosomal protein S19 3 83 2.7E-35 T 21-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RAF_RS05115 070026bfc634f70054aff658e2d09d1f 92 SUPERFAMILY SSF54570 3 84 2.75E-34 T 21-04-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 RAF_RS05115 070026bfc634f70054aff658e2d09d1f 92 PANTHER PTHR11880 1 88 2.5E-45 T 21-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 RAF_RS05115 070026bfc634f70054aff658e2d09d1f 92 Gene3D G3DSA:3.30.860.10 1 90 4.9E-40 T 21-04-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 RAF_RS00180 455cbe6c72f8695c310200a3c1f2ee8a 360 SUPERFAMILY SSF52540 5 355 5.4E-43 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00180 455cbe6c72f8695c310200a3c1f2ee8a 360 Pfam PF02463 RecF/RecN/SMC N terminal domain 5 350 3.1E-20 T 21-04-2016 IPR003395 RecF/RecN/SMC, N-terminal RAF_RS00180 455cbe6c72f8695c310200a3c1f2ee8a 360 Gene3D G3DSA:3.40.50.300 174 191 7.7E-39 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00180 455cbe6c72f8695c310200a3c1f2ee8a 360 Gene3D G3DSA:3.40.50.300 5 140 7.7E-39 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00180 455cbe6c72f8695c310200a3c1f2ee8a 360 Gene3D G3DSA:3.40.50.300 240 353 7.7E-39 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00180 455cbe6c72f8695c310200a3c1f2ee8a 360 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 360 74.938 T 21-04-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 RAF_RS00180 455cbe6c72f8695c310200a3c1f2ee8a 360 PANTHER PTHR32182 1 352 9.7E-27 T 21-04-2016 RAF_RS00180 455cbe6c72f8695c310200a3c1f2ee8a 360 ProSitePatterns PS00618 RecF protein signature 2. 309 327 - T 21-04-2016 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 RAF_RS00180 455cbe6c72f8695c310200a3c1f2ee8a 360 ProSitePatterns PS00617 RecF protein signature 1. 120 140 - T 21-04-2016 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 RAF_RS00180 455cbe6c72f8695c310200a3c1f2ee8a 360 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 5 353 9.4E-55 T 21-04-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 RAF_RS01970 f1b5738ff13b0236dea3ff9bd413a395 37 SUPERFAMILY SSF88723 1 33 6.21E-8 T 21-04-2016 IPR029060 PIN domain-like RAF_RS01970 f1b5738ff13b0236dea3ff9bd413a395 37 Gene3D G3DSA:3.40.50.1010 1 34 1.5E-10 T 21-04-2016 IPR029060 PIN domain-like RAF_RS05310 76c7a1a5d7e5ac53d68c923afbc02261 273 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 132 221 3.0E-25 T 21-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 RAF_RS05310 76c7a1a5d7e5ac53d68c923afbc02261 273 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 272 41.418 T 21-04-2016 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 RAF_RS05310 76c7a1a5d7e5ac53d68c923afbc02261 273 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 116 8.7E-31 T 21-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RAF_RS05310 76c7a1a5d7e5ac53d68c923afbc02261 273 Gene3D G3DSA:3.20.190.10 2 132 1.2E-32 T 21-04-2016 RAF_RS05310 76c7a1a5d7e5ac53d68c923afbc02261 273 Pfam PF06827 Zinc finger found in FPG and IleRS 244 271 7.7E-8 T 21-04-2016 IPR010663 Zinc finger, FPG/IleRS-type RAF_RS05310 76c7a1a5d7e5ac53d68c923afbc02261 273 PANTHER PTHR22993 1 271 3.4E-105 T 21-04-2016 RAF_RS05310 76c7a1a5d7e5ac53d68c923afbc02261 273 SMART SM01232 132 224 3.7E-43 T 21-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 RAF_RS05310 76c7a1a5d7e5ac53d68c923afbc02261 273 SUPERFAMILY SSF57716 220 271 6.27E-16 T 21-04-2016 RAF_RS05310 76c7a1a5d7e5ac53d68c923afbc02261 273 PANTHER PTHR22993:SF15 1 271 3.4E-105 T 21-04-2016 RAF_RS05310 76c7a1a5d7e5ac53d68c923afbc02261 273 Gene3D G3DSA:1.10.8.50 133 271 7.5E-49 T 21-04-2016 RAF_RS05310 76c7a1a5d7e5ac53d68c923afbc02261 273 SUPERFAMILY SSF81624 2 139 2.35E-35 T 21-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RAF_RS05310 76c7a1a5d7e5ac53d68c923afbc02261 273 SMART SM00898 2 117 3.3E-41 T 21-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RAF_RS05310 76c7a1a5d7e5ac53d68c923afbc02261 273 SUPERFAMILY SSF46946 133 225 4.45E-28 T 21-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 RAF_RS05310 76c7a1a5d7e5ac53d68c923afbc02261 273 ProSitePatterns PS01242 Zinc finger FPG-type signature. 247 271 - T 21-04-2016 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 RAF_RS05310 76c7a1a5d7e5ac53d68c923afbc02261 273 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 271 1.2E-89 T 21-04-2016 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 RAF_RS01790 72d2a00f87d59591a61f4712d40ea51a 393 SUPERFAMILY SSF56601 20 358 1.98E-61 T 21-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RAF_RS01790 72d2a00f87d59591a61f4712d40ea51a 393 Gene3D G3DSA:3.40.710.10 20 357 7.0E-61 T 21-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RAF_RS01790 72d2a00f87d59591a61f4712d40ea51a 393 Pfam PF00144 Beta-lactamase 29 370 1.2E-66 T 21-04-2016 IPR001466 Beta-lactamase-related RAF_RS01790 72d2a00f87d59591a61f4712d40ea51a 393 PANTHER PTHR22935 20 357 1.1E-44 T 21-04-2016 RAF_RS00630 84d80b56a58fd3d82d80bdeed60eea5c 334 Gene3D G3DSA:1.25.40.10 47 106 1.0E-7 T 21-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RAF_RS00630 84d80b56a58fd3d82d80bdeed60eea5c 334 SUPERFAMILY SSF53335 123 317 2.51E-19 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS00630 84d80b56a58fd3d82d80bdeed60eea5c 334 Gene3D G3DSA:3.40.50.150 160 332 4.7E-14 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS00630 84d80b56a58fd3d82d80bdeed60eea5c 334 Pfam PF13489 Methyltransferase domain 161 312 2.8E-7 T 21-04-2016 RAF_RS00630 84d80b56a58fd3d82d80bdeed60eea5c 334 SUPERFAMILY SSF48452 48 111 3.46E-9 T 21-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RAF_RS00755 6267dac76936b70154d2902ac1e3693d 891 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 521 710 7.5E-18 T 21-04-2016 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 RAF_RS00130 feb6a464e6b13beeef906105dc959f59 67 Gene3D G3DSA:1.25.40.10 7 60 9.6E-7 T 21-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RAF_RS00130 feb6a464e6b13beeef906105dc959f59 67 ProDom PD501207 TPR REPEAT REPEATS RC0022 1 50 1.0E-21 T 21-04-2016 RAF_RS00130 feb6a464e6b13beeef906105dc959f59 67 SUPERFAMILY SSF48452 19 60 6.07E-5 T 21-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RAF_RS04575 cd2f060a2489629973b32b272923da59 173 Gene3D G3DSA:3.90.80.10 6 171 1.4E-59 T 21-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 RAF_RS04575 cd2f060a2489629973b32b272923da59 173 PANTHER PTHR10286 14 171 1.5E-64 T 21-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 RAF_RS04575 cd2f060a2489629973b32b272923da59 173 Pfam PF00719 Inorganic pyrophosphatase 17 171 1.2E-53 T 21-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 RAF_RS04575 cd2f060a2489629973b32b272923da59 173 SUPERFAMILY SSF50324 12 171 8.9E-64 T 21-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 RAF_RS04575 cd2f060a2489629973b32b272923da59 173 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 65 71 - T 21-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 RAF_RS04575 cd2f060a2489629973b32b272923da59 173 PANTHER PTHR10286:SF15 14 171 1.5E-64 T 21-04-2016 RAF_RS04575 cd2f060a2489629973b32b272923da59 173 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 13 173 36.986 T 21-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 RAF_RS01880 594ca9e03845fa3ab271d33213383998 167 Gene3D G3DSA:2.60.40.790 62 164 2.0E-20 T 21-04-2016 IPR008978 HSP20-like chaperone RAF_RS01880 594ca9e03845fa3ab271d33213383998 167 Pfam PF00011 Hsp20/alpha crystallin family 72 166 1.1E-19 T 21-04-2016 IPR002068 Alpha crystallin/Hsp20 domain RAF_RS01880 594ca9e03845fa3ab271d33213383998 167 SUPERFAMILY SSF49764 57 166 1.1E-21 T 21-04-2016 IPR008978 HSP20-like chaperone RAF_RS01880 594ca9e03845fa3ab271d33213383998 167 PANTHER PTHR11527 61 167 3.4E-17 T 21-04-2016 IPR031107 Small heat shock protein HSP20 RAF_RS00210 aad0e40c87c21c544abd11a82ef9cad5 222 ProDom PD210227 COIL COILED RC0039 RP030 1 222 2.0E-101 T 21-04-2016 IPR020171 Uncharacterised protein family RC0039 RAF_RS01545 2d5ba3979c19bcf354703947e0126c4e 123 SUPERFAMILY SSF90123 11 122 2.35E-12 T 21-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 RAF_RS01545 2d5ba3979c19bcf354703947e0126c4e 123 Gene3D G3DSA:1.20.1560.10 11 122 2.0E-6 T 21-04-2016 RAF_RS00140 72b0c6df92455aaf8d23eebac92fe245 164 Pfam PF00430 ATP synthase B/B' CF(0) 8 129 2.8E-10 T 21-04-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 RAF_RS00140 72b0c6df92455aaf8d23eebac92fe245 164 Hamap MF_01398 ATP synthase subunit b [atpF]. 4 150 8.551 T 21-04-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 RAF_RS06340 8db8f6fda6e3074c76d0d71a493b48b8 575 Gene3D G3DSA:3.40.50.720 404 537 3.9E-28 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS06340 8db8f6fda6e3074c76d0d71a493b48b8 575 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 14 286 1.5E-71 T 21-04-2016 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 RAF_RS06340 8db8f6fda6e3074c76d0d71a493b48b8 575 Pfam PF00999 Sodium/hydrogen exchanger family 10 375 5.5E-63 T 21-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RAF_RS06340 8db8f6fda6e3074c76d0d71a493b48b8 575 PANTHER PTHR16254 1 563 1.5E-166 T 21-04-2016 RAF_RS06340 8db8f6fda6e3074c76d0d71a493b48b8 575 Pfam PF02254 TrkA-N domain 409 522 4.4E-18 T 21-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RAF_RS06340 8db8f6fda6e3074c76d0d71a493b48b8 575 SUPERFAMILY SSF51735 405 546 1.21E-26 T 21-04-2016 IPR016040 NAD(P)-binding domain RAF_RS06340 8db8f6fda6e3074c76d0d71a493b48b8 575 PANTHER PTHR16254:SF6 1 563 1.5E-166 T 21-04-2016 RAF_RS06490 180169b1e8ee8d564d826ca2e080ba46 744 Pfam PF09397 Ftsk gamma domain 682 741 2.0E-24 T 21-04-2016 IPR018541 FtsK gamma domain RAF_RS06490 180169b1e8ee8d564d826ca2e080ba46 744 SUPERFAMILY SSF52540 340 648 2.13E-45 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06490 180169b1e8ee8d564d826ca2e080ba46 744 SUPERFAMILY SSF46785 680 742 2.72E-19 T 21-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain RAF_RS06490 180169b1e8ee8d564d826ca2e080ba46 744 Pfam PF01580 FtsK/SpoIIIE family 360 579 1.9E-66 T 21-04-2016 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 RAF_RS06490 180169b1e8ee8d564d826ca2e080ba46 744 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 14 165 1.3E-23 T 21-04-2016 IPR025199 DNA translocase FtsK, 4TM region RAF_RS06490 180169b1e8ee8d564d826ca2e080ba46 744 SMART SM00843 678 744 3.6E-32 T 21-04-2016 IPR018541 FtsK gamma domain RAF_RS06490 180169b1e8ee8d564d826ca2e080ba46 744 PANTHER PTHR22683 199 744 9.9E-225 T 21-04-2016 RAF_RS06490 180169b1e8ee8d564d826ca2e080ba46 744 Gene3D G3DSA:3.40.50.300 337 500 1.9E-88 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06490 180169b1e8ee8d564d826ca2e080ba46 744 Gene3D G3DSA:3.40.50.300 532 643 1.9E-88 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06490 180169b1e8ee8d564d826ca2e080ba46 744 PANTHER PTHR22683:SF41 199 744 9.9E-225 T 21-04-2016 RAF_RS00195 4daf4f7674236604f193d53af7f8941c 89 Pfam PF00809 Pterin binding enzyme 7 86 8.0E-13 T 21-04-2016 IPR000489 Pterin-binding domain GO:0042558 RAF_RS00195 4daf4f7674236604f193d53af7f8941c 89 Gene3D G3DSA:3.20.20.20 7 86 6.5E-15 T 21-04-2016 IPR000489 Pterin-binding domain GO:0042558 RAF_RS00195 4daf4f7674236604f193d53af7f8941c 89 SUPERFAMILY SSF51717 5 86 2.09E-17 T 21-04-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 RAF_RS02310 a16ee1da937534d20e94237185fa63c6 82 Pfam PF02481 DNA recombination-mediator protein A 9 82 1.0E-21 T 21-04-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 RAF_RS02310 a16ee1da937534d20e94237185fa63c6 82 PANTHER PTHR32039:SF8 9 82 2.1E-17 T 21-04-2016 RAF_RS02310 a16ee1da937534d20e94237185fa63c6 82 SUPERFAMILY SSF102405 11 67 1.26E-9 T 21-04-2016 RAF_RS02310 a16ee1da937534d20e94237185fa63c6 82 PANTHER PTHR32039 9 82 2.1E-17 T 21-04-2016 RAF_RS02310 a16ee1da937534d20e94237185fa63c6 82 Gene3D G3DSA:3.40.50.450 3 59 1.7E-4 T 21-04-2016 RAF_RS04265 4e23d2b4fdd5c935cfb93c6eaf42db5f 1892 SMART SM01359 1013 1152 2.8E-19 T 21-04-2016 IPR011625 Alpha-2-macroglobulin, N-terminal 2 RAF_RS04265 4e23d2b4fdd5c935cfb93c6eaf42db5f 1892 SUPERFAMILY SSF48239 1433 1630 3.59E-17 T 21-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid RAF_RS04265 4e23d2b4fdd5c935cfb93c6eaf42db5f 1892 PANTHER PTHR40094 71 1891 7.1E-150 T 21-04-2016 RAF_RS04265 4e23d2b4fdd5c935cfb93c6eaf42db5f 1892 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 1773 1812 7.3E-4 T 21-04-2016 IPR001434 Domain of unknown function DUF11 RAF_RS04265 4e23d2b4fdd5c935cfb93c6eaf42db5f 1892 Gene3D G3DSA:1.50.10.20 1434 1626 1.2E-15 T 21-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid RAF_RS04265 4e23d2b4fdd5c935cfb93c6eaf42db5f 1892 Pfam PF00207 Alpha-2-macroglobulin family 1220 1306 2.7E-11 T 21-04-2016 IPR001599 Alpha-2-macroglobulin GO:0004866 RAF_RS04265 4e23d2b4fdd5c935cfb93c6eaf42db5f 1892 PANTHER PTHR40094:SF1 71 1891 7.1E-150 T 21-04-2016 RAF_RS04265 4e23d2b4fdd5c935cfb93c6eaf42db5f 1892 Pfam PF01835 MG2 domain 647 746 9.7E-16 T 21-04-2016 IPR002890 Alpha-2-macroglobulin, N-terminal GO:0004866 RAF_RS04265 4e23d2b4fdd5c935cfb93c6eaf42db5f 1892 SMART SM01360 1219 1308 7.5E-21 T 21-04-2016 IPR001599 Alpha-2-macroglobulin GO:0004866 RAF_RS04265 4e23d2b4fdd5c935cfb93c6eaf42db5f 1892 Pfam PF11974 Alpha-2-macroglobulin MG1 domain 538 638 6.8E-12 T 21-04-2016 IPR021868 Alpha-2-macroglobulin MG1 domain RAF_RS02770 26ef6e9d4a9ae33e841ff1767997fc7d 205 PANTHER PTHR34606 2 186 7.0E-20 T 21-04-2016 RAF_RS02770 26ef6e9d4a9ae33e841ff1767997fc7d 205 Pfam PF04972 BON domain 44 112 3.6E-18 T 21-04-2016 IPR007055 BON domain RAF_RS02770 26ef6e9d4a9ae33e841ff1767997fc7d 205 Pfam PF04972 BON domain 126 187 3.3E-8 T 21-04-2016 IPR007055 BON domain RAF_RS02770 26ef6e9d4a9ae33e841ff1767997fc7d 205 PANTHER PTHR34606:SF4 2 186 7.0E-20 T 21-04-2016 RAF_RS06675 97b028a943c7ffcc05206d87e4ada15f 313 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 10 311 2.1E-89 T 21-04-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAF_RS06675 97b028a943c7ffcc05206d87e4ada15f 313 SUPERFAMILY SSF55174 12 67 1.85E-11 T 21-04-2016 RAF_RS06675 97b028a943c7ffcc05206d87e4ada15f 313 PANTHER PTHR11079:SF73 1 313 1.1E-116 T 21-04-2016 RAF_RS06675 97b028a943c7ffcc05206d87e4ada15f 313 Pfam PF01479 S4 domain 14 60 1.1E-9 T 21-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RAF_RS06675 97b028a943c7ffcc05206d87e4ada15f 313 SMART SM00363 13 78 1.8E-11 T 21-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RAF_RS06675 97b028a943c7ffcc05206d87e4ada15f 313 PANTHER PTHR11079 1 313 1.1E-116 T 21-04-2016 RAF_RS06675 97b028a943c7ffcc05206d87e4ada15f 313 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 133 147 - T 21-04-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAF_RS06675 97b028a943c7ffcc05206d87e4ada15f 313 Pfam PF00849 RNA pseudouridylate synthase 87 244 6.7E-32 T 21-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAF_RS06675 97b028a943c7ffcc05206d87e4ada15f 313 SUPERFAMILY SSF55120 76 312 6.0E-73 T 21-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAF_RS06675 97b028a943c7ffcc05206d87e4ada15f 313 Gene3D G3DSA:3.10.290.10 12 62 1.9E-13 T 21-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RAF_RS05510 f0338981dc469918c850709b6538a035 552 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 271 547 8.1E-41 T 21-04-2016 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal RAF_RS05510 f0338981dc469918c850709b6538a035 552 PANTHER PTHR30009:SF0 1 97 1.7E-86 T 21-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RAF_RS05510 f0338981dc469918c850709b6538a035 552 PANTHER PTHR30009:SF0 117 346 1.7E-86 T 21-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RAF_RS05510 f0338981dc469918c850709b6538a035 552 PANTHER PTHR30009:SF0 382 547 1.7E-86 T 21-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RAF_RS05510 f0338981dc469918c850709b6538a035 552 Pfam PF01578 Cytochrome C assembly protein 2 207 2.6E-32 T 21-04-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 RAF_RS05510 f0338981dc469918c850709b6538a035 552 PANTHER PTHR30009 1 97 1.7E-86 T 21-04-2016 RAF_RS05510 f0338981dc469918c850709b6538a035 552 PANTHER PTHR30009 117 346 1.7E-86 T 21-04-2016 RAF_RS05510 f0338981dc469918c850709b6538a035 552 PANTHER PTHR30009 382 547 1.7E-86 T 21-04-2016 RAF_RS05510 f0338981dc469918c850709b6538a035 552 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 206 222 4.7E-54 T 21-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RAF_RS05510 f0338981dc469918c850709b6538a035 552 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 35 52 4.7E-54 T 21-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RAF_RS05510 f0338981dc469918c850709b6538a035 552 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 222 241 4.7E-54 T 21-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RAF_RS05510 f0338981dc469918c850709b6538a035 552 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 156 176 4.7E-54 T 21-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RAF_RS05510 f0338981dc469918c850709b6538a035 552 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 62 84 4.7E-54 T 21-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RAF_RS05510 f0338981dc469918c850709b6538a035 552 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 186 206 4.7E-54 T 21-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RAF_RS05510 f0338981dc469918c850709b6538a035 552 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 122 148 4.7E-54 T 21-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 RAF_RS06975 2694ad4580d1e3e962e55050a14824bd 145 TIGRFAM TIGR00701 TIGR00701: TIGR00701 family protein 4 145 1.0E-69 T 21-04-2016 IPR014351 Conserved hypothetical protein CHP00701 RAF_RS06975 2694ad4580d1e3e962e55050a14824bd 145 PIRSF PIRSF004638 1 145 5.2E-53 T 21-04-2016 IPR005265 Uncharacterised protein family UPF0093 RAF_RS06975 2694ad4580d1e3e962e55050a14824bd 145 PANTHER PTHR40255 3 144 1.2E-41 T 21-04-2016 RAF_RS06975 2694ad4580d1e3e962e55050a14824bd 145 Pfam PF03653 Uncharacterised protein family (UPF0093) 1 144 3.3E-55 T 21-04-2016 IPR005265 Uncharacterised protein family UPF0093 RAF_RS05540 bc5f3c5c43583eda65d8f70b57430a86 314 PANTHER PTHR30480:SF7 5 287 4.4E-82 T 21-04-2016 RAF_RS05540 bc5f3c5c43583eda65d8f70b57430a86 314 Gene3D G3DSA:3.20.20.300 9 294 6.6E-70 T 21-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAF_RS05540 bc5f3c5c43583eda65d8f70b57430a86 314 SUPERFAMILY SSF51445 8 290 9.69E-65 T 21-04-2016 IPR017853 Glycoside hydrolase superfamily RAF_RS05540 bc5f3c5c43583eda65d8f70b57430a86 314 PANTHER PTHR30480 5 287 4.4E-82 T 21-04-2016 RAF_RS05540 bc5f3c5c43583eda65d8f70b57430a86 314 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 17 304 9.4E-55 T 21-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RAF_RS04360 ae397e2ca982e3b7eb4273cd31599e36 132 ProDom PD201674 DIVISION CELL RP568 MEMBRANE TRANSMEMBRANE FTSL 4 129 6.0E-58 T 21-04-2016 RAF_RS02340 5d5985ebde93525c1054c4c3d926d7e7 53 Gene3D G3DSA:1.10.260.40 1 46 8.3E-11 T 21-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RAF_RS02340 5d5985ebde93525c1054c4c3d926d7e7 53 SUPERFAMILY SSF47413 1 49 2.44E-10 T 21-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RAF_RS02340 5d5985ebde93525c1054c4c3d926d7e7 53 Pfam PF01381 Helix-turn-helix 2 47 8.0E-6 T 21-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAF_RS00980 52682e6cce78280d13ae68d97a8234ab 236 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 22 231 1.0E-57 T 21-04-2016 RAF_RS00980 52682e6cce78280d13ae68d97a8234ab 236 PANTHER PTHR23291:SF42 19 235 4.8E-65 T 21-04-2016 RAF_RS00980 52682e6cce78280d13ae68d97a8234ab 236 PANTHER PTHR23291 19 235 4.8E-65 T 21-04-2016 IPR006214 Bax inhibitor 1-related RAF_RS04395 120bacd273218c99c4aba4342e5fba59 177 SUPERFAMILY SSF110087 4 171 1.57E-31 T 21-04-2016 IPR007410 DR1885-like metal-binding protein RAF_RS04395 120bacd273218c99c4aba4342e5fba59 177 PANTHER PTHR36302:SF1 66 167 1.7E-18 T 21-04-2016 RAF_RS04395 120bacd273218c99c4aba4342e5fba59 177 Pfam PF04314 Protein of unknown function (DUF461) 52 159 3.0E-24 T 21-04-2016 IPR007410 DR1885-like metal-binding protein RAF_RS04395 120bacd273218c99c4aba4342e5fba59 177 PANTHER PTHR36302 66 167 1.7E-18 T 21-04-2016 RAF_RS06470 27222a3c0046a228dd72637fdcdebb16 492 SUPERFAMILY SSF143968 328 490 6.28E-64 T 21-04-2016 RAF_RS06470 27222a3c0046a228dd72637fdcdebb16 492 PANTHER PTHR30108:SF1 1 490 1.1E-219 T 21-04-2016 RAF_RS06470 27222a3c0046a228dd72637fdcdebb16 492 SUPERFAMILY SSF50475 3 327 1.84E-109 T 21-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 RAF_RS06470 27222a3c0046a228dd72637fdcdebb16 492 Gene3D G3DSA:1.20.5.570 460 492 3.0E-11 T 21-04-2016 RAF_RS06470 27222a3c0046a228dd72637fdcdebb16 492 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 8 460 1.6E-154 T 21-04-2016 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978|UniPathway: UPA00232 RAF_RS06470 27222a3c0046a228dd72637fdcdebb16 492 Gene3D G3DSA:3.40.1670.10 342 458 1.4E-50 T 21-04-2016 RAF_RS06470 27222a3c0046a228dd72637fdcdebb16 492 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 10 435 1.8E-158 T 21-04-2016 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978|UniPathway: UPA00232 RAF_RS06470 27222a3c0046a228dd72637fdcdebb16 492 PANTHER PTHR30108 1 490 1.1E-219 T 21-04-2016 RAF_RS03755 e97d83e1898c0591aa4aec8496c9caa6 59 SMART SM00257 8 52 2.5E-4 T 21-04-2016 IPR018392 LysM domain RAF_RS03755 e97d83e1898c0591aa4aec8496c9caa6 59 Gene3D G3DSA:3.10.350.10 7 46 2.7E-11 T 21-04-2016 IPR018392 LysM domain RAF_RS03755 e97d83e1898c0591aa4aec8496c9caa6 59 SUPERFAMILY SSF54106 7 49 1.29E-8 T 21-04-2016 IPR018392 LysM domain RAF_RS03755 e97d83e1898c0591aa4aec8496c9caa6 59 Pfam PF01476 LysM domain 9 49 2.8E-9 T 21-04-2016 IPR018392 LysM domain RAF_RS03010 5766d749ff2236d14097f1e3e353ee45 40 Gene3D G3DSA:2.30.30.320 2 29 2.5E-9 T 21-04-2016 IPR023387 DUF1653-like domain RAF_RS03010 5766d749ff2236d14097f1e3e353ee45 40 Pfam PF07866 Protein of unknown function (DUF1653) 4 29 6.7E-9 T 21-04-2016 IPR023387 DUF1653-like domain RAF_RS02270 72e4050e401ecabc16f9fc83efc478b3 339 PANTHER PTHR30518:SF2 10 330 2.6E-69 T 21-04-2016 RAF_RS02270 72e4050e401ecabc16f9fc83efc478b3 339 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 144 324 1.7E-56 T 21-04-2016 IPR003770 Uncharacterised protein family UPF0755, YceG-like RAF_RS02270 72e4050e401ecabc16f9fc83efc478b3 339 PANTHER PTHR30518 10 330 2.6E-69 T 21-04-2016 RAF_RS02270 72e4050e401ecabc16f9fc83efc478b3 339 Gene3D G3DSA:3.30.160.60 291 323 1.6E-14 T 21-04-2016 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain GO:0003676 RAF_RS02270 72e4050e401ecabc16f9fc83efc478b3 339 Pfam PF02618 YceG-like family 45 317 6.5E-74 T 21-04-2016 IPR003770 Uncharacterised protein family UPF0755, YceG-like RAF_RS05400 1a61e62c760a632598d874fa213226b9 96 SUPERFAMILY SSF53756 1 91 2.45E-6 T 21-04-2016 RAF_RS04385 6bb56b6246732e68deb8c766bb4c2cf6 465 Pfam PF00474 Sodium:solute symporter family 51 405 9.0E-25 T 21-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 RAF_RS04385 6bb56b6246732e68deb8c766bb4c2cf6 465 PANTHER PTHR11819 4 465 3.3E-34 T 21-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 RAF_RS00030 db8853e1f66e286a70edb2fc9b424eb5 79 Gene3D G3DSA:2.30.30.110 8 75 9.1E-6 T 21-04-2016 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor RAF_RS00030 db8853e1f66e286a70edb2fc9b424eb5 79 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 9 76 2.9E-7 T 21-04-2016 IPR003477 mRNA interferase PemK-like protein GO:0003677 RAF_RS00030 db8853e1f66e286a70edb2fc9b424eb5 79 SUPERFAMILY SSF50118 5 77 2.62E-11 T 21-04-2016 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor RAF_RS01600 8edad035180a2b93622fde644a4132ae 573 SUPERFAMILY SSF48403 453 569 8.19E-11 T 21-04-2016 IPR020683 Ankyrin repeat-containing domain RAF_RS01600 8edad035180a2b93622fde644a4132ae 573 Gene3D G3DSA:1.25.40.20 449 569 6.3E-12 T 21-04-2016 IPR020683 Ankyrin repeat-containing domain RAF_RS00420 6f684b2d45046cdff7491a83649e189b 282 Pfam PF09992 Phosphodiester glycosidase 130 239 2.1E-9 T 21-04-2016 IPR018711 Phosphodiester glycosidase RAF_RS00235 ee2ff80571ba46eff0c7170895514c0e 189 Pfam PF02622 Uncharacterized ACR, COG1678 22 176 7.5E-37 T 21-04-2016 IPR003774 Protein of unknown function UPF0301 RAF_RS00235 ee2ff80571ba46eff0c7170895514c0e 189 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 7 189 30.692 T 21-04-2016 IPR003774 Protein of unknown function UPF0301 RAF_RS00235 ee2ff80571ba46eff0c7170895514c0e 189 Gene3D G3DSA:3.40.1740.10 133 178 2.1E-26 T 21-04-2016 RAF_RS00235 ee2ff80571ba46eff0c7170895514c0e 189 Gene3D G3DSA:3.40.1740.10 6 45 2.1E-26 T 21-04-2016 RAF_RS00235 ee2ff80571ba46eff0c7170895514c0e 189 PANTHER PTHR30327:SF1 5 189 6.6E-32 T 21-04-2016 RAF_RS00235 ee2ff80571ba46eff0c7170895514c0e 189 Gene3D G3DSA:3.30.70.1300 46 132 4.5E-17 T 21-04-2016 RAF_RS00235 ee2ff80571ba46eff0c7170895514c0e 189 PANTHER PTHR30327 5 189 6.6E-32 T 21-04-2016 RAF_RS00235 ee2ff80571ba46eff0c7170895514c0e 189 SUPERFAMILY SSF143456 7 189 4.71E-46 T 21-04-2016 RAF_RS05645 f53349367674048218d045cba2696bfb 158 Gene3D G3DSA:2.30.30.220 2 114 3.4E-41 T 21-04-2016 IPR007481 Stringent starvation protein B RAF_RS05645 f53349367674048218d045cba2696bfb 158 SUPERFAMILY SSF101738 3 114 6.41E-36 T 21-04-2016 IPR007481 Stringent starvation protein B RAF_RS05645 f53349367674048218d045cba2696bfb 158 Pfam PF04386 Stringent starvation protein B 9 138 3.3E-29 T 21-04-2016 IPR007481 Stringent starvation protein B RAF_RS01065 6ef0f09f4e42b0c342a09b2cc6e3a7c1 156 Pfam PF01029 NusB family 11 150 9.5E-26 T 21-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RAF_RS01065 6ef0f09f4e42b0c342a09b2cc6e3a7c1 156 Gene3D G3DSA:1.10.940.10 8 152 2.9E-31 T 21-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RAF_RS01065 6ef0f09f4e42b0c342a09b2cc6e3a7c1 156 PANTHER PTHR11078 1 156 3.1E-21 T 21-04-2016 IPR011605 NusB antitermination factor GO:0006353 RAF_RS01065 6ef0f09f4e42b0c342a09b2cc6e3a7c1 156 SUPERFAMILY SSF48013 8 152 3.79E-29 T 21-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RAF_RS01065 6ef0f09f4e42b0c342a09b2cc6e3a7c1 156 Hamap MF_00073 N utilization substance protein B homolog [nusB]. 6 153 18.312 T 21-04-2016 IPR011605 NusB antitermination factor GO:0006353 RAF_RS01065 6ef0f09f4e42b0c342a09b2cc6e3a7c1 156 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 9 151 4.7E-33 T 21-04-2016 IPR011605 NusB antitermination factor GO:0006353 RAF_RS01770 09079c461a95bf88d0fe71c00a4c98b2 382 Gene3D G3DSA:1.20.1250.20 8 184 7.9E-8 T 21-04-2016 RAF_RS01770 09079c461a95bf88d0fe71c00a4c98b2 382 SUPERFAMILY SSF103473 4 378 6.02E-16 T 21-04-2016 IPR020846 Major facilitator superfamily domain RAF_RS05095 4097395d1fa9eef503fe4ba89a673081 71 TIGRFAM TIGR00012 L29: ribosomal protein uL29 13 64 1.2E-17 T 21-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05095 4097395d1fa9eef503fe4ba89a673081 71 Pfam PF00831 Ribosomal L29 protein 10 65 7.0E-19 T 21-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05095 4097395d1fa9eef503fe4ba89a673081 71 PANTHER PTHR10916 15 66 1.2E-15 T 21-04-2016 RAF_RS05095 4097395d1fa9eef503fe4ba89a673081 71 SUPERFAMILY SSF46561 10 67 2.09E-17 T 21-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05095 4097395d1fa9eef503fe4ba89a673081 71 Gene3D G3DSA:1.10.287.310 10 65 7.9E-21 T 21-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05095 4097395d1fa9eef503fe4ba89a673081 71 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 65 15.0 T 21-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS05095 4097395d1fa9eef503fe4ba89a673081 71 ProSitePatterns PS00579 Ribosomal protein L29 signature. 44 58 - T 21-04-2016 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS02075 87079d8a7c58d23dadf6e66c9b7cf613 295 Pfam PF11019 Protein of unknown function (DUF2608) 23 286 3.4E-57 T 21-04-2016 IPR022565 Protein of unknown function DUF2608 RAF_RS02075 87079d8a7c58d23dadf6e66c9b7cf613 295 ProDom PD317075 PRECURSOR RP296 SIGNAL 73 244 7.0E-4 T 21-04-2016 IPR020531 Uncharacterised protein family, RP296 RAF_RS06725 6ad68a630003c9c61b4ed6778f6dd240 61 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 3 50 2.3E-9 T 21-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RAF_RS06725 6ad68a630003c9c61b4ed6778f6dd240 61 Gene3D G3DSA:3.40.1620.10 3 29 4.1E-10 T 21-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RAF_RS06725 6ad68a630003c9c61b4ed6778f6dd240 61 SUPERFAMILY SSF143120 3 43 1.83E-7 T 21-04-2016 RAF_RS06725 6ad68a630003c9c61b4ed6778f6dd240 61 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 2 34 6.9E-12 T 21-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM RAF_RS06230 6fdf88b0e8d02a880dbf446d3c3664aa 339 PANTHER PTHR11432:SF3 7 338 4.1E-190 T 21-04-2016 RAF_RS06230 6fdf88b0e8d02a880dbf446d3c3664aa 339 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 57 72 - T 21-04-2016 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 RAF_RS06230 6fdf88b0e8d02a880dbf446d3c3664aa 339 Pfam PF00146 NADH dehydrogenase 18 326 3.1E-131 T 21-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 RAF_RS06230 6fdf88b0e8d02a880dbf446d3c3664aa 339 PANTHER PTHR11432 7 338 4.1E-190 T 21-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 RAF_RS06230 6fdf88b0e8d02a880dbf446d3c3664aa 339 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 11 333 25.781 T 21-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 RAF_RS06230 6fdf88b0e8d02a880dbf446d3c3664aa 339 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 214 227 - T 21-04-2016 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 RAF_RS03480 d0c6c2975b3934876ce52479fdfa2cb5 209 Gene3D G3DSA:1.10.287.990 33 97 8.7E-22 T 21-04-2016 RAF_RS03480 d0c6c2975b3934876ce52479fdfa2cb5 209 PANTHER PTHR11404 9 207 2.6E-105 T 21-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RAF_RS03480 d0c6c2975b3934876ce52479fdfa2cb5 209 PRINTS PR01703 Manganese superoxide dismutase signature 38 51 1.0E-21 T 21-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RAF_RS03480 d0c6c2975b3934876ce52479fdfa2cb5 209 PRINTS PR01703 Manganese superoxide dismutase signature 81 94 1.0E-21 T 21-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RAF_RS03480 d0c6c2975b3934876ce52479fdfa2cb5 209 PRINTS PR01703 Manganese superoxide dismutase signature 17 28 1.0E-21 T 21-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RAF_RS03480 d0c6c2975b3934876ce52479fdfa2cb5 209 PRINTS PR01703 Manganese superoxide dismutase signature 134 142 1.0E-21 T 21-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RAF_RS03480 d0c6c2975b3934876ce52479fdfa2cb5 209 PRINTS PR01703 Manganese superoxide dismutase signature 170 182 1.0E-21 T 21-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RAF_RS03480 d0c6c2975b3934876ce52479fdfa2cb5 209 SUPERFAMILY SSF46609 6 99 5.89E-30 T 21-04-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RAF_RS03480 d0c6c2975b3934876ce52479fdfa2cb5 209 PIRSF PIRSF000349 1 209 8.0E-81 T 21-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RAF_RS03480 d0c6c2975b3934876ce52479fdfa2cb5 209 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 105 205 1.3E-39 T 21-04-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RAF_RS03480 d0c6c2975b3934876ce52479fdfa2cb5 209 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 14 97 8.7E-26 T 21-04-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RAF_RS03480 d0c6c2975b3934876ce52479fdfa2cb5 209 PANTHER PTHR11404:SF8 9 207 2.6E-105 T 21-04-2016 RAF_RS03480 d0c6c2975b3934876ce52479fdfa2cb5 209 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 172 179 - T 21-04-2016 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RAF_RS03480 d0c6c2975b3934876ce52479fdfa2cb5 209 SUPERFAMILY SSF54719 101 207 3.01E-45 T 21-04-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 RAF_RS04825 de1e8367aaa19837588e051b4744cb1a 203 TIGRFAM TIGR02396 diverge_rpsU: rpsU-divergently transcribed protein 11 189 1.0E-61 T 21-04-2016 IPR012762 Ubiquinone biosynthesis protein COQ9 GO:0006744 UniPathway: UPA00232 RAF_RS04825 de1e8367aaa19837588e051b4744cb1a 203 Pfam PF08511 COQ9 118 182 1.9E-20 T 21-04-2016 IPR013718 COQ9 UniPathway: UPA00232 RAF_RS05895 d93118c96851f83e4b706dad23da69e9 372 SUPERFAMILY SSF53822 41 366 1.28E-26 T 21-04-2016 IPR028082 Periplasmic binding protein-like I RAF_RS05895 d93118c96851f83e4b706dad23da69e9 372 Gene3D G3DSA:3.40.50.2300 41 168 2.4E-11 T 21-04-2016 RAF_RS05895 d93118c96851f83e4b706dad23da69e9 372 Pfam PF13458 Periplasmic binding protein 41 257 5.4E-8 T 21-04-2016 IPR028081 Leucine-binding protein domain RAF_RS00220 9bce12517ef6c9c1985c00b850b2c387 139 Gene3D G3DSA:1.25.40.10 43 126 6.2E-7 T 21-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RAF_RS00220 9bce12517ef6c9c1985c00b850b2c387 139 ProDom PD519226 RC0040 10 113 5.0E-53 T 21-04-2016 RAF_RS00220 9bce12517ef6c9c1985c00b850b2c387 139 SUPERFAMILY SSF81901 43 115 2.35E-6 T 21-04-2016 RAF_RS06515 b3d2fc4cebd35ad57d12c0925e16ff84 327 PANTHER PTHR22926:SF3 10 320 4.0E-49 T 21-04-2016 RAF_RS06515 b3d2fc4cebd35ad57d12c0925e16ff84 327 Pfam PF00953 Glycosyl transferase family 4 82 226 2.4E-24 T 21-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RAF_RS06515 b3d2fc4cebd35ad57d12c0925e16ff84 327 PANTHER PTHR22926 10 320 4.0E-49 T 21-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 RAF_RS04120 d171e069a71d1b79dea5163df1a5cbcf 230 SUPERFAMILY SSF55120 61 224 1.38E-33 T 21-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAF_RS04120 d171e069a71d1b79dea5163df1a5cbcf 230 Pfam PF00849 RNA pseudouridylate synthase 63 192 9.8E-10 T 21-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAF_RS04120 d171e069a71d1b79dea5163df1a5cbcf 230 PANTHER PTHR21600:SF2 3 228 4.9E-62 T 21-04-2016 RAF_RS04120 d171e069a71d1b79dea5163df1a5cbcf 230 PANTHER PTHR21600 3 228 4.9E-62 T 21-04-2016 RAF_RS04120 d171e069a71d1b79dea5163df1a5cbcf 230 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 67 223 5.6E-38 T 21-04-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 RAF_RS04120 d171e069a71d1b79dea5163df1a5cbcf 230 Gene3D G3DSA:3.10.290.10 3 63 2.0E-17 T 21-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RAF_RS04120 d171e069a71d1b79dea5163df1a5cbcf 230 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 99 113 - T 21-04-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 RAF_RS04120 d171e069a71d1b79dea5163df1a5cbcf 230 SMART SM00363 2 59 7.3E-11 T 21-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RAF_RS04120 d171e069a71d1b79dea5163df1a5cbcf 230 Pfam PF01479 S4 domain 3 46 1.6E-9 T 21-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 RAF_RS04120 d171e069a71d1b79dea5163df1a5cbcf 230 SUPERFAMILY SSF55174 3 89 1.05E-15 T 21-04-2016 RAF_RS00475 4aae5f06b3ff10ba02ba6187d55f5216 274 SUPERFAMILY SSF51569 2 273 6.87E-101 T 21-04-2016 RAF_RS00475 4aae5f06b3ff10ba02ba6187d55f5216 274 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 17 273 8.2E-129 T 21-04-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 RAF_RS00475 4aae5f06b3ff10ba02ba6187d55f5216 274 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 12 274 52.524 T 21-04-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 RAF_RS00475 4aae5f06b3ff10ba02ba6187d55f5216 274 PANTHER PTHR21057 3 274 1.2E-147 T 21-04-2016 RAF_RS00475 4aae5f06b3ff10ba02ba6187d55f5216 274 Pfam PF00793 DAHP synthetase I family 8 272 3.1E-83 T 21-04-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 RAF_RS00475 4aae5f06b3ff10ba02ba6187d55f5216 274 Gene3D G3DSA:3.20.20.70 17 273 4.2E-108 T 21-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 RAF_RS00475 4aae5f06b3ff10ba02ba6187d55f5216 274 PANTHER PTHR21057:SF2 3 274 1.2E-147 T 21-04-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 RAF_RS03880 db384113df5059ab43f946f08c4ae7d3 66 PANTHER PTHR33295:SF4 1 59 1.7E-14 T 21-04-2016 RAF_RS03880 db384113df5059ab43f946f08c4ae7d3 66 PANTHER PTHR33295 1 59 1.7E-14 T 21-04-2016 RAF_RS03730 3692f3a94138d0713ad3d072577d8c42 372 Gene3D G3DSA:3.90.1150.10 241 366 1.0E-35 T 21-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 RAF_RS03730 3692f3a94138d0713ad3d072577d8c42 372 PANTHER PTHR11601 1 366 9.7E-108 T 21-04-2016 RAF_RS03730 3692f3a94138d0713ad3d072577d8c42 372 PANTHER PTHR11601:SF45 1 366 9.7E-108 T 21-04-2016 RAF_RS03730 3692f3a94138d0713ad3d072577d8c42 372 Gene3D G3DSA:3.40.640.10 14 240 3.3E-57 T 21-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 RAF_RS03730 3692f3a94138d0713ad3d072577d8c42 372 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 187 207 - T 21-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site RAF_RS03730 3692f3a94138d0713ad3d072577d8c42 372 Pfam PF00266 Aminotransferase class-V 2 359 1.4E-52 T 21-04-2016 IPR000192 Aminotransferase class V domain RAF_RS03730 3692f3a94138d0713ad3d072577d8c42 372 SUPERFAMILY SSF53383 1 367 4.62E-84 T 21-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase RAF_RS03730 3692f3a94138d0713ad3d072577d8c42 372 PIRSF PIRSF005572 1 370 5.9E-112 T 21-04-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 RAF_RS03100 e19875d4e253ce71a527f960fd7b9d3a 98 Pfam PF01292 Prokaryotic cytochrome b561 10 76 4.2E-9 T 21-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 RAF_RS03100 e19875d4e253ce71a527f960fd7b9d3a 98 PANTHER PTHR30529:SF5 3 86 3.6E-16 T 21-04-2016 RAF_RS03100 e19875d4e253ce71a527f960fd7b9d3a 98 SUPERFAMILY SSF81342 5 88 1.57E-11 T 21-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 RAF_RS03100 e19875d4e253ce71a527f960fd7b9d3a 98 Gene3D G3DSA:1.20.950.20 9 85 9.8E-4 T 21-04-2016 RAF_RS03100 e19875d4e253ce71a527f960fd7b9d3a 98 PANTHER PTHR30529 3 86 3.6E-16 T 21-04-2016 RAF_RS00710 d9d4c07716cf765c907193090b3f24cf 78 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 68 5.8E-11 T 21-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00710 d9d4c07716cf765c907193090b3f24cf 78 Pfam PF01197 Ribosomal protein L31 1 66 5.4E-14 T 21-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00710 d9d4c07716cf765c907193090b3f24cf 78 ProSitePatterns PS01143 Ribosomal protein L31 signature. 35 57 - T 21-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00710 d9d4c07716cf765c907193090b3f24cf 78 SUPERFAMILY SSF143800 1 70 7.85E-12 T 21-04-2016 RAF_RS03130 cf81d290d1a19da43f132b0920866798 144 ProDom PD085709 MEMBRANE RP436 UNCHARACTERIZED INTEGRAL PREDICTED TRANSMEMBRANE 5 140 2.0E-56 T 21-04-2016 IPR020143 Uncharacterised protein family, RP436 RAF_RS05405 79fffdd93a4387686411aa121e591118 183 Pfam PF00852 Glycosyltransferase family 10 (fucosyltransferase) C-term 16 155 1.3E-16 T 21-04-2016 IPR001503 Glycosyl transferase family 10 GO:0006486|GO:0008417|GO:0016020 UniPathway: UPA00378 RAF_RS05405 79fffdd93a4387686411aa121e591118 183 SUPERFAMILY SSF53756 7 166 1.26E-29 T 21-04-2016 RAF_RS03320 760ea49d717c92afeefb13a749689a03 123 Pfam PF12784 PD-(D/E)XK nuclease family transposase 6 122 9.9E-19 T 21-04-2016 RAF_RS05355 94ee4fa10cca947889110f8785774308 462 Gene3D G3DSA:1.20.1250.20 263 439 3.0E-5 T 21-04-2016 RAF_RS05355 94ee4fa10cca947889110f8785774308 462 Gene3D G3DSA:1.20.1250.20 12 195 3.9E-10 T 21-04-2016 RAF_RS05355 94ee4fa10cca947889110f8785774308 462 SUPERFAMILY SSF103473 244 437 4.05E-32 T 21-04-2016 IPR020846 Major facilitator superfamily domain RAF_RS05355 94ee4fa10cca947889110f8785774308 462 SUPERFAMILY SSF103473 10 210 4.05E-32 T 21-04-2016 IPR020846 Major facilitator superfamily domain RAF_RS05355 94ee4fa10cca947889110f8785774308 462 PANTHER PTHR23508 10 227 2.3E-47 T 21-04-2016 RAF_RS05355 94ee4fa10cca947889110f8785774308 462 PANTHER PTHR23508 251 438 2.3E-47 T 21-04-2016 RAF_RS05395 ec94a504e8a98a50aeed0552efdbfedc 428 PANTHER PTHR30563 13 427 3.1E-15 T 21-04-2016 RAF_RS05395 ec94a504e8a98a50aeed0552efdbfedc 428 Pfam PF02646 RmuC family 107 393 3.3E-45 T 21-04-2016 IPR003798 DNA recombination RmuC RAF_RS03035 0085a1f6d70cef5c437ed1e46ee60e93 230 PANTHER PTHR13773 46 226 6.2E-37 T 21-04-2016 RAF_RS03035 0085a1f6d70cef5c437ed1e46ee60e93 230 Pfam PF01148 Cytidylyltransferase family 68 226 4.7E-41 T 21-04-2016 RAF_RS03035 0085a1f6d70cef5c437ed1e46ee60e93 230 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 188 214 - T 21-04-2016 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00557 RAF_RS03260 40188adf47d64eb01db94f7cb79a2c90 171 SUPERFAMILY SSF51161 4 167 1.33E-44 T 21-04-2016 IPR011004 Trimeric LpxA-like RAF_RS03260 40188adf47d64eb01db94f7cb79a2c90 171 PANTHER PTHR13061 1 168 8.6E-75 T 21-04-2016 RAF_RS03260 40188adf47d64eb01db94f7cb79a2c90 171 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 90 122 1.4E-5 T 21-04-2016 IPR001451 Hexapeptide repeat RAF_RS03260 40188adf47d64eb01db94f7cb79a2c90 171 Gene3D G3DSA:2.160.10.10 6 168 2.2E-45 T 21-04-2016 RAF_RS02390 bc9b5f6c8fa75084e784e945ef8ebae9 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 54 69 2.6E-6 T 21-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RAF_RS02390 bc9b5f6c8fa75084e784e945ef8ebae9 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 98 111 2.6E-6 T 21-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RAF_RS02390 bc9b5f6c8fa75084e784e945ef8ebae9 255 PRINTS PR00111 Alpha/beta hydrolase fold signature 112 125 2.6E-6 T 21-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RAF_RS02390 bc9b5f6c8fa75084e784e945ef8ebae9 255 Gene3D G3DSA:3.40.50.1820 178 237 8.1E-33 T 21-04-2016 IPR029058 Alpha/Beta hydrolase fold RAF_RS02390 bc9b5f6c8fa75084e784e945ef8ebae9 255 Gene3D G3DSA:3.40.50.1820 22 130 8.1E-33 T 21-04-2016 IPR029058 Alpha/Beta hydrolase fold RAF_RS02390 bc9b5f6c8fa75084e784e945ef8ebae9 255 PANTHER PTHR16138 4 255 2.3E-108 T 21-04-2016 RAF_RS02390 bc9b5f6c8fa75084e784e945ef8ebae9 255 Pfam PF00561 alpha/beta hydrolase fold 26 140 3.3E-14 T 21-04-2016 IPR000073 Alpha/beta hydrolase fold-1 RAF_RS02390 bc9b5f6c8fa75084e784e945ef8ebae9 255 SUPERFAMILY SSF53474 17 235 5.4E-36 T 21-04-2016 IPR029058 Alpha/Beta hydrolase fold RAF_RS04690 abb1af4da8728dca7d9d7510d4e062c9 490 PANTHER PTHR32241:SF3 14 208 4.4E-23 T 21-04-2016 RAF_RS04690 abb1af4da8728dca7d9d7510d4e062c9 490 Gene3D G3DSA:3.40.1090.10 15 333 1.1E-59 T 21-04-2016 RAF_RS04690 abb1af4da8728dca7d9d7510d4e062c9 490 Pfam PF01734 Patatin-like phospholipase 14 209 2.4E-17 T 21-04-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 RAF_RS04690 abb1af4da8728dca7d9d7510d4e062c9 490 PANTHER PTHR32241 14 208 4.4E-23 T 21-04-2016 RAF_RS04690 abb1af4da8728dca7d9d7510d4e062c9 490 SUPERFAMILY SSF52151 6 320 7.06E-38 T 21-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 RAF_RS04915 810cd84502fbc756b2ae2539ecf1040a 95 Pfam PF00166 Chaperonin 10 Kd subunit 3 94 5.4E-33 T 21-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RAF_RS04915 810cd84502fbc756b2ae2539ecf1040a 95 Gene3D G3DSA:2.30.33.40 2 94 1.1E-35 T 21-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RAF_RS04915 810cd84502fbc756b2ae2539ecf1040a 95 SUPERFAMILY SSF50129 1 94 2.17E-33 T 21-04-2016 IPR011032 GroES-like RAF_RS04915 810cd84502fbc756b2ae2539ecf1040a 95 PRINTS PR00297 10kDa chaperonin signature 3 18 1.3E-30 T 21-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RAF_RS04915 810cd84502fbc756b2ae2539ecf1040a 95 PRINTS PR00297 10kDa chaperonin signature 81 94 1.3E-30 T 21-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RAF_RS04915 810cd84502fbc756b2ae2539ecf1040a 95 PRINTS PR00297 10kDa chaperonin signature 60 72 1.3E-30 T 21-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RAF_RS04915 810cd84502fbc756b2ae2539ecf1040a 95 PRINTS PR00297 10kDa chaperonin signature 25 46 1.3E-30 T 21-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RAF_RS04915 810cd84502fbc756b2ae2539ecf1040a 95 PANTHER PTHR10772 1 94 5.6E-40 T 21-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RAF_RS04915 810cd84502fbc756b2ae2539ecf1040a 95 Hamap MF_00580 10 kDa chaperonin [groS]. 2 95 25.552 T 21-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RAF_RS04915 810cd84502fbc756b2ae2539ecf1040a 95 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 21-04-2016 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 RAF_RS04915 810cd84502fbc756b2ae2539ecf1040a 95 SMART SM00883 2 94 1.3E-51 T 21-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RAF_RS03405 61d50cc5e0a9cad0d8a65a645098640f 125 Gene3D G3DSA:1.10.260.40 15 98 4.2E-17 T 21-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RAF_RS03405 61d50cc5e0a9cad0d8a65a645098640f 125 Pfam PF01381 Helix-turn-helix 19 73 5.5E-14 T 21-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAF_RS03405 61d50cc5e0a9cad0d8a65a645098640f 125 SUPERFAMILY SSF47413 8 84 6.4E-19 T 21-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 RAF_RS03405 61d50cc5e0a9cad0d8a65a645098640f 125 SMART SM00530 18 73 2.9E-12 T 21-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RAF_RS03405 61d50cc5e0a9cad0d8a65a645098640f 125 PANTHER PTHR10245 9 76 4.4E-16 T 21-04-2016 RAF_RS03405 61d50cc5e0a9cad0d8a65a645098640f 125 PANTHER PTHR10245:SF38 9 76 4.4E-16 T 21-04-2016 RAF_RS04125 ad08dea0e85b51fedd15854c8826c52f 957 Pfam PF00805 Pentapeptide repeats (8 copies) 460 499 0.0011 T 21-04-2016 IPR001646 Pentapeptide repeat RAF_RS04125 ad08dea0e85b51fedd15854c8826c52f 957 Pfam PF00805 Pentapeptide repeats (8 copies) 539 576 6.0E-9 T 21-04-2016 IPR001646 Pentapeptide repeat RAF_RS04125 ad08dea0e85b51fedd15854c8826c52f 957 Pfam PF00805 Pentapeptide repeats (8 copies) 57 96 1.3E-7 T 21-04-2016 IPR001646 Pentapeptide repeat RAF_RS04125 ad08dea0e85b51fedd15854c8826c52f 957 Pfam PF13599 Pentapeptide repeats (9 copies) 617 691 1.0E-7 T 21-04-2016 IPR001646 Pentapeptide repeat RAF_RS04125 ad08dea0e85b51fedd15854c8826c52f 957 Pfam PF13599 Pentapeptide repeats (9 copies) 350 419 4.9E-8 T 21-04-2016 IPR001646 Pentapeptide repeat RAF_RS04125 ad08dea0e85b51fedd15854c8826c52f 957 SUPERFAMILY SSF141571 519 686 2.09E-31 T 21-04-2016 RAF_RS04125 ad08dea0e85b51fedd15854c8826c52f 957 PANTHER PTHR14136 362 702 5.7E-28 T 21-04-2016 RAF_RS04125 ad08dea0e85b51fedd15854c8826c52f 957 SUPERFAMILY SSF141571 341 451 5.1E-19 T 21-04-2016 RAF_RS04125 ad08dea0e85b51fedd15854c8826c52f 957 SUPERFAMILY SSF141571 55 123 1.22E-15 T 21-04-2016 RAF_RS04125 ad08dea0e85b51fedd15854c8826c52f 957 PANTHER PTHR14136:SF0 362 702 5.7E-28 T 21-04-2016 RAF_RS06635 7a4fbd7c45eb39c1f5daf4be70a5746a 621 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 26 153 5.6E-14 T 21-04-2016 RAF_RS06635 7a4fbd7c45eb39c1f5daf4be70a5746a 621 Hamap MF_00505 Chaperone protein HtpG [htpG]. 1 617 29.378 T 21-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 RAF_RS06635 7a4fbd7c45eb39c1f5daf4be70a5746a 621 SUPERFAMILY SSF55874 3 212 4.58E-65 T 21-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RAF_RS06635 7a4fbd7c45eb39c1f5daf4be70a5746a 621 PANTHER PTHR11528:SF44 4 620 2.9E-257 T 21-04-2016 RAF_RS06635 7a4fbd7c45eb39c1f5daf4be70a5746a 621 PIRSF PIRSF002583 2 620 5.9E-211 T 21-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 RAF_RS06635 7a4fbd7c45eb39c1f5daf4be70a5746a 621 SUPERFAMILY SSF110942 503 616 9.42E-29 T 21-04-2016 RAF_RS06635 7a4fbd7c45eb39c1f5daf4be70a5746a 621 PANTHER PTHR11528 4 620 2.9E-257 T 21-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 RAF_RS06635 7a4fbd7c45eb39c1f5daf4be70a5746a 621 Gene3D G3DSA:3.30.565.10 4 229 7.9E-80 T 21-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RAF_RS06635 7a4fbd7c45eb39c1f5daf4be70a5746a 621 SMART SM00387 26 182 1.3E-7 T 21-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain RAF_RS06635 7a4fbd7c45eb39c1f5daf4be70a5746a 621 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 24 33 - T 21-04-2016 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0006950|GO:0051082 RAF_RS06635 7a4fbd7c45eb39c1f5daf4be70a5746a 621 PRINTS PR00775 90kDa heat shock protein signature 170 187 6.2E-59 T 21-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RAF_RS06635 7a4fbd7c45eb39c1f5daf4be70a5746a 621 PRINTS PR00775 90kDa heat shock protein signature 4 24 6.2E-59 T 21-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RAF_RS06635 7a4fbd7c45eb39c1f5daf4be70a5746a 621 PRINTS PR00775 90kDa heat shock protein signature 119 141 6.2E-59 T 21-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RAF_RS06635 7a4fbd7c45eb39c1f5daf4be70a5746a 621 PRINTS PR00775 90kDa heat shock protein signature 188 206 6.2E-59 T 21-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RAF_RS06635 7a4fbd7c45eb39c1f5daf4be70a5746a 621 PRINTS PR00775 90kDa heat shock protein signature 74 91 6.2E-59 T 21-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RAF_RS06635 7a4fbd7c45eb39c1f5daf4be70a5746a 621 PRINTS PR00775 90kDa heat shock protein signature 92 109 6.2E-59 T 21-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RAF_RS06635 7a4fbd7c45eb39c1f5daf4be70a5746a 621 PRINTS PR00775 90kDa heat shock protein signature 25 47 6.2E-59 T 21-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal RAF_RS06635 7a4fbd7c45eb39c1f5daf4be70a5746a 621 SUPERFAMILY SSF54211 222 473 6.3E-85 T 21-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold RAF_RS06635 7a4fbd7c45eb39c1f5daf4be70a5746a 621 Pfam PF00183 Hsp90 protein 215 619 5.2E-111 T 21-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 RAF_RS02305 b4d2fa20dbc9ca56914eeaea5d674697 145 PANTHER PTHR32039 4 61 2.1E-23 T 21-04-2016 RAF_RS02305 b4d2fa20dbc9ca56914eeaea5d674697 145 Pfam PF02481 DNA recombination-mediator protein A 1 52 3.9E-15 T 21-04-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 RAF_RS02305 b4d2fa20dbc9ca56914eeaea5d674697 145 SUPERFAMILY SSF102405 1 61 5.31E-8 T 21-04-2016 RAF_RS02305 b4d2fa20dbc9ca56914eeaea5d674697 145 PANTHER PTHR32039:SF8 4 61 2.1E-23 T 21-04-2016 RAF_RS01350 75acd19c76ea21cbfe4c4ac27605d4bf 356 ProDom PD208305 RP198 PRECURSOR SIGNAL 1 356 0.0 T 21-04-2016 RAF_RS01340 c39ed6f31c0deb5f77b4bc9e4ea4eb1d 148 PANTHER PTHR31964 6 148 1.0E-12 T 21-04-2016 RAF_RS01340 c39ed6f31c0deb5f77b4bc9e4ea4eb1d 148 Pfam PF00582 Universal stress protein family 7 146 1.8E-21 T 21-04-2016 IPR006016 UspA GO:0006950 RAF_RS01340 c39ed6f31c0deb5f77b4bc9e4ea4eb1d 148 Gene3D G3DSA:3.40.50.620 7 146 1.2E-25 T 21-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RAF_RS01340 c39ed6f31c0deb5f77b4bc9e4ea4eb1d 148 PRINTS PR01438 Universal stress protein signature 107 119 1.8E-6 T 21-04-2016 IPR006015 Universal stress protein A RAF_RS01340 c39ed6f31c0deb5f77b4bc9e4ea4eb1d 148 PRINTS PR01438 Universal stress protein signature 7 25 1.8E-6 T 21-04-2016 IPR006015 Universal stress protein A RAF_RS01340 c39ed6f31c0deb5f77b4bc9e4ea4eb1d 148 PRINTS PR01438 Universal stress protein signature 124 146 1.8E-6 T 21-04-2016 IPR006015 Universal stress protein A RAF_RS01340 c39ed6f31c0deb5f77b4bc9e4ea4eb1d 148 SUPERFAMILY SSF52402 7 147 1.26E-23 T 21-04-2016 RAF_RS02000 64f320ba2946352771e9ec15c4b4d0f6 250 Pfam PF03524 Conjugal transfer protein 31 245 3.7E-61 T 21-04-2016 IPR010258 Conjugal transfer, TrbG/VirB9/CagX RAF_RS02000 64f320ba2946352771e9ec15c4b4d0f6 250 TIGRFAM TIGR02781 VirB9: P-type conjugative transfer protein VirB9 4 247 3.1E-80 T 21-04-2016 IPR014148 P-type conjugative transfer protein VirB9 RAF_RS04805 7f6ccf9f471353386687c765cb2ee4d3 192 PANTHER PTHR21310:SF14 19 168 5.1E-24 T 21-04-2016 RAF_RS04805 7f6ccf9f471353386687c765cb2ee4d3 192 Gene3D G3DSA:3.90.1200.10 17 166 2.3E-34 T 21-04-2016 RAF_RS04805 7f6ccf9f471353386687c765cb2ee4d3 192 PANTHER PTHR21310 19 168 5.1E-24 T 21-04-2016 RAF_RS04805 7f6ccf9f471353386687c765cb2ee4d3 192 Pfam PF01636 Phosphotransferase enzyme family 19 159 8.0E-18 T 21-04-2016 IPR002575 Aminoglycoside phosphotransferase RAF_RS04805 7f6ccf9f471353386687c765cb2ee4d3 192 SUPERFAMILY SSF56112 19 166 2.82E-29 T 21-04-2016 IPR011009 Protein kinase-like domain RAF_RS07105 9367e7dc89011f007a636e92e4064845 50 PANTHER PTHR35810:SF2 1 36 1.7E-12 T 21-04-2016 RAF_RS07105 9367e7dc89011f007a636e92e4064845 50 PANTHER PTHR35810 1 36 1.7E-12 T 21-04-2016 RAF_RS07105 9367e7dc89011f007a636e92e4064845 50 Pfam PF13310 Virulence protein RhuM family 1 38 1.4E-14 T 21-04-2016 IPR011204 Virulence protein RhuM-like RAF_RS02200 3a8895a6b6dc11d30ddc7abc269c0e74 511 PANTHER PTHR30386:SF3 214 511 3.0E-109 T 21-04-2016 RAF_RS02200 3a8895a6b6dc11d30ddc7abc269c0e74 511 PANTHER PTHR30386:SF3 60 177 3.0E-109 T 21-04-2016 RAF_RS02200 3a8895a6b6dc11d30ddc7abc269c0e74 511 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 367 388 4.3E-48 T 21-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RAF_RS02200 3a8895a6b6dc11d30ddc7abc269c0e74 511 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 134 154 4.3E-48 T 21-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RAF_RS02200 3a8895a6b6dc11d30ddc7abc269c0e74 511 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 400 424 4.3E-48 T 21-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RAF_RS02200 3a8895a6b6dc11d30ddc7abc269c0e74 511 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 475 490 4.3E-48 T 21-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RAF_RS02200 3a8895a6b6dc11d30ddc7abc269c0e74 511 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 92 115 4.3E-48 T 21-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RAF_RS02200 3a8895a6b6dc11d30ddc7abc269c0e74 511 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 424 447 4.3E-48 T 21-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RAF_RS02200 3a8895a6b6dc11d30ddc7abc269c0e74 511 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 490 510 4.3E-48 T 21-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RAF_RS02200 3a8895a6b6dc11d30ddc7abc269c0e74 511 PANTHER PTHR30386 214 511 3.0E-109 T 21-04-2016 RAF_RS02200 3a8895a6b6dc11d30ddc7abc269c0e74 511 PANTHER PTHR30386 60 177 3.0E-109 T 21-04-2016 RAF_RS02200 3a8895a6b6dc11d30ddc7abc269c0e74 511 Gene3D G3DSA:2.40.50.100 125 156 2.9E-14 T 21-04-2016 RAF_RS02200 3a8895a6b6dc11d30ddc7abc269c0e74 511 Gene3D G3DSA:2.40.50.100 352 387 2.9E-14 T 21-04-2016 RAF_RS02200 3a8895a6b6dc11d30ddc7abc269c0e74 511 Pfam PF13533 Biotin-lipoyl like 132 160 3.4E-6 T 21-04-2016 RAF_RS02200 3a8895a6b6dc11d30ddc7abc269c0e74 511 ProSitePatterns PS00543 HlyD family secretion proteins signature. 475 497 - T 21-04-2016 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 RAF_RS02200 3a8895a6b6dc11d30ddc7abc269c0e74 511 Pfam PF13437 HlyD family secretion protein 355 476 4.7E-19 T 21-04-2016 RAF_RS02200 3a8895a6b6dc11d30ddc7abc269c0e74 511 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 83 511 4.5E-152 T 21-04-2016 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 RAF_RS00695 0708f8b0aa4bb03b7a7c98ac19a7bbb6 123 SUPERFAMILY SSF64438 21 105 1.62E-5 T 21-04-2016 IPR011324 Cytotoxic necrotizing factor-like, catalytic RAF_RS02970 58598ecac2d7e0a4e0e8f76c5149e51d 94 Gene3D G3DSA:3.30.460.10 30 85 2.8E-4 T 21-04-2016 RAF_RS06545 fdfa8bad48b6f02746fcbc2308fe12cd 168 SUPERFAMILY SSF53927 11 160 5.02E-46 T 21-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 RAF_RS06545 fdfa8bad48b6f02746fcbc2308fe12cd 168 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 16 159 45.225 T 21-04-2016 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 RAF_RS06545 fdfa8bad48b6f02746fcbc2308fe12cd 168 PANTHER PTHR11079 15 160 3.1E-41 T 21-04-2016 RAF_RS06545 fdfa8bad48b6f02746fcbc2308fe12cd 168 Pfam PF14437 MafB19-like deaminase 15 159 3.4E-31 T 21-04-2016 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 RAF_RS06545 fdfa8bad48b6f02746fcbc2308fe12cd 168 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 63 100 - T 21-04-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 RAF_RS06545 fdfa8bad48b6f02746fcbc2308fe12cd 168 Gene3D G3DSA:3.40.140.10 11 157 1.4E-49 T 21-04-2016 RAF_RS03890 9892154cc8cb672b97db128eabe931df 329 SUPERFAMILY SSF52317 4 160 5.49E-31 T 21-04-2016 IPR029062 Class I glutamine amidotransferase-like RAF_RS03890 9892154cc8cb672b97db128eabe931df 329 Gene3D G3DSA:3.50.30.60 163 315 4.8E-36 T 21-04-2016 IPR027461 LD-carboxypeptidase A, C-terminal domain RAF_RS03890 9892154cc8cb672b97db128eabe931df 329 Pfam PF02016 LD-carboxypeptidase 13 310 1.5E-54 T 21-04-2016 IPR003507 Peptidase family S66 RAF_RS03890 9892154cc8cb672b97db128eabe931df 329 SUPERFAMILY SSF141986 150 195 1.83E-21 T 21-04-2016 IPR027461 LD-carboxypeptidase A, C-terminal domain RAF_RS03890 9892154cc8cb672b97db128eabe931df 329 SUPERFAMILY SSF141986 222 314 1.83E-21 T 21-04-2016 IPR027461 LD-carboxypeptidase A, C-terminal domain RAF_RS03890 9892154cc8cb672b97db128eabe931df 329 Gene3D G3DSA:3.40.50.10740 6 161 1.1E-35 T 21-04-2016 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal domain RAF_RS03890 9892154cc8cb672b97db128eabe931df 329 PANTHER PTHR30237:SF2 1 191 4.0E-37 T 21-04-2016 RAF_RS03890 9892154cc8cb672b97db128eabe931df 329 PANTHER PTHR30237:SF2 219 328 4.0E-37 T 21-04-2016 RAF_RS03890 9892154cc8cb672b97db128eabe931df 329 PANTHER PTHR30237 1 191 4.0E-37 T 21-04-2016 RAF_RS03890 9892154cc8cb672b97db128eabe931df 329 PANTHER PTHR30237 219 328 4.0E-37 T 21-04-2016 RAF_RS04620 3926d8bf9b05e09d2026e5f0e798c143 57 Gene3D G3DSA:3.40.50.360 1 53 3.5E-12 T 21-04-2016 IPR029039 Flavoprotein-like domain RAF_RS04620 3926d8bf9b05e09d2026e5f0e798c143 57 SUPERFAMILY SSF52218 1 51 2.19E-8 T 21-04-2016 IPR029039 Flavoprotein-like domain RAF_RS02620 20abd3ad434470d004f33e7faa769fb7 405 Gene3D G3DSA:1.20.1250.20 5 200 7.1E-14 T 21-04-2016 RAF_RS02620 20abd3ad434470d004f33e7faa769fb7 405 Gene3D G3DSA:1.20.1250.20 221 399 1.8E-6 T 21-04-2016 RAF_RS02620 20abd3ad434470d004f33e7faa769fb7 405 Pfam PF07690 Major Facilitator Superfamily 10 355 1.3E-16 T 21-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAF_RS02620 20abd3ad434470d004f33e7faa769fb7 405 PANTHER PTHR23508 5 400 1.1E-42 T 21-04-2016 RAF_RS02620 20abd3ad434470d004f33e7faa769fb7 405 SUPERFAMILY SSF103473 5 399 5.75E-36 T 21-04-2016 IPR020846 Major facilitator superfamily domain RAF_RS06145 fca57501903468dc723bc09a7ccde102 836 Pfam PF13116 Protein of unknown function 231 483 5.5E-9 T 21-04-2016 IPR025263 Domain of unknown function DUF3971 RAF_RS06145 fca57501903468dc723bc09a7ccde102 836 Pfam PF13502 AsmA-like C-terminal region 669 807 2.0E-6 T 21-04-2016 IPR032712 AsmA-like, C-terminal RAF_RS05650 da54e87cfcbca58dd3d89e73b907f9c4 270 PANTHER PTHR39962:SF1 5 267 1.9E-51 T 21-04-2016 RAF_RS05650 da54e87cfcbca58dd3d89e73b907f9c4 270 Pfam PF06230 Protein of unknown function (DUF1009) 57 267 5.6E-61 T 21-04-2016 IPR010415 Protein of unknown function DUF1009 RAF_RS05650 da54e87cfcbca58dd3d89e73b907f9c4 270 PANTHER PTHR39962 5 267 1.9E-51 T 21-04-2016 RAF_RS05360 496c286bbf6d93c44017ca13e196fe90 282 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 10 279 1.0E-99 T 21-04-2016 IPR006370 4-hydroxybenzoate polyprenyltransferase GO:0004659|GO:0016021 UniPathway: UPA00232 RAF_RS05360 496c286bbf6d93c44017ca13e196fe90 282 Pfam PF01040 UbiA prenyltransferase family 26 267 9.3E-52 T 21-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 RAF_RS05360 496c286bbf6d93c44017ca13e196fe90 282 PANTHER PTHR11048:SF28 11 279 1.2E-70 T 21-04-2016 RAF_RS05360 496c286bbf6d93c44017ca13e196fe90 282 PANTHER PTHR11048 11 279 1.2E-70 T 21-04-2016 RAF_RS05360 496c286bbf6d93c44017ca13e196fe90 282 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 65 87 - T 21-04-2016 IPR030470 UbiA prenyltransferase conserved site RAF_RS06930 e72542a3280636dbbff7e648fa14f577 111 SUPERFAMILY SSF54565 2 95 1.57E-30 T 21-04-2016 IPR023803 Ribosomal protein S16 domain RAF_RS06930 e72542a3280636dbbff7e648fa14f577 111 ProSitePatterns PS00732 Ribosomal protein S16 signature. 3 12 - T 21-04-2016 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS06930 e72542a3280636dbbff7e648fa14f577 111 Gene3D G3DSA:3.30.1320.10 2 82 2.5E-32 T 21-04-2016 IPR023803 Ribosomal protein S16 domain RAF_RS06930 e72542a3280636dbbff7e648fa14f577 111 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 2 80 23.752 T 21-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS06930 e72542a3280636dbbff7e648fa14f577 111 Pfam PF00886 Ribosomal protein S16 9 70 2.8E-25 T 21-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS06930 e72542a3280636dbbff7e648fa14f577 111 PANTHER PTHR12919 2 111 4.4E-42 T 21-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS06930 e72542a3280636dbbff7e648fa14f577 111 TIGRFAM TIGR00002 S16: ribosomal protein bS16 3 82 1.6E-32 T 21-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS04315 60bc771de244f53b1d5d86aca7272d80 428 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 326 341 6.7E-16 T 21-04-2016 RAF_RS04315 60bc771de244f53b1d5d86aca7272d80 428 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 202 217 6.7E-16 T 21-04-2016 RAF_RS04315 60bc771de244f53b1d5d86aca7272d80 428 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 341 357 6.7E-16 T 21-04-2016 RAF_RS04315 60bc771de244f53b1d5d86aca7272d80 428 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 57 79 6.7E-16 T 21-04-2016 RAF_RS04315 60bc771de244f53b1d5d86aca7272d80 428 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 8 56 6.1E-26 T 21-04-2016 IPR005728 Rickettsial palindromic element RAF_RS04315 60bc771de244f53b1d5d86aca7272d80 428 Gene3D G3DSA:3.50.50.60 59 228 3.6E-33 T 21-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAF_RS04315 60bc771de244f53b1d5d86aca7272d80 428 Gene3D G3DSA:3.50.50.60 314 392 3.6E-33 T 21-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAF_RS04315 60bc771de244f53b1d5d86aca7272d80 428 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 58 426 2.8E-109 T 21-04-2016 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 UniPathway: UPA00232 RAF_RS04315 60bc771de244f53b1d5d86aca7272d80 428 TIGRFAM TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase 57 426 2.2E-132 T 21-04-2016 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase GO:0006744|GO:0008681 KEGG: 00130+1.14.13.-|KEGG: 00140+1.14.13.-|KEGG: 00232+1.14.13.-|KEGG: 00261+1.14.13.-|KEGG: 00340+1.14.13.-|KEGG: 00360+1.14.13.-|KEGG: 00361+1.14.13.-|KEGG: 00362+1.14.13.-|KEGG: 00363+1.14.13.-|KEGG: 00380+1.14.13.-|KEGG: 00403+1.14.13.-|KEGG: 00590+1.14.13.-|KEGG: 00591+1.14.13.-|KEGG: 00622+1.14.13.-|KEGG: 00623+1.14.13.-|KEGG: 00624+1.14.13.-|KEGG: 00625+1.14.13.-|KEGG: 00626+1.14.13.-|KEGG: 00627+1.14.13.-|KEGG: 00640+1.14.13.-|KEGG: 00643+1.14.13.-|KEGG: 00830+1.14.13.-|KEGG: 00903+1.14.13.-|KEGG: 00904+1.14.13.-|KEGG: 00905+1.14.13.-|KEGG: 00906+1.14.13.-|KEGG: 00930+1.14.13.-|KEGG: 00940+1.14.13.-|KEGG: 00941+1.14.13.-|KEGG: 00943+1.14.13.-|KEGG: 00945+1.14.13.-|KEGG: 00950+1.14.13.-|KEGG: 00966+1.14.13.-|KEGG: 00980+1.14.13.-|KEGG: 00982+1.14.13.-|KEGG: 00983+1.14.13.-|UniPathway: UPA00232 RAF_RS04315 60bc771de244f53b1d5d86aca7272d80 428 Pfam PF01494 FAD binding domain 58 357 1.6E-20 T 21-04-2016 IPR002938 FAD-binding domain GO:0071949 RAF_RS04315 60bc771de244f53b1d5d86aca7272d80 428 PANTHER PTHR13789:SF240 59 428 7.8E-99 T 21-04-2016 RAF_RS04315 60bc771de244f53b1d5d86aca7272d80 428 PANTHER PTHR13789 59 428 7.8E-99 T 21-04-2016 RAF_RS04315 60bc771de244f53b1d5d86aca7272d80 428 SUPERFAMILY SSF51905 313 420 9.5E-44 T 21-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAF_RS04315 60bc771de244f53b1d5d86aca7272d80 428 SUPERFAMILY SSF51905 58 223 9.5E-44 T 21-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RAF_RS04315 60bc771de244f53b1d5d86aca7272d80 428 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 340 353 - T 21-04-2016 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 UniPathway: UPA00232 RAF_RS00135 b4a3cefb6f919678e5af28dfc05bf5ba 67 ProDom PD503580 TPR REPEAT RC0023 REPEATS 1 67 4.0E-32 T 21-04-2016 RAF_RS01090 114eb313a0a01400ab49990a853383e4 93 PANTHER PTHR28524 65 93 1.2E-14 T 21-04-2016 RAF_RS01090 114eb313a0a01400ab49990a853383e4 93 Pfam PF07896 Protein of unknown function (DUF1674) 60 93 2.4E-12 T 21-04-2016 IPR012875 Protein of unknown function DUF1674 RAF_RS01090 114eb313a0a01400ab49990a853383e4 93 PANTHER PTHR28524:SF3 65 93 1.2E-14 T 21-04-2016 RAF_RS01090 114eb313a0a01400ab49990a853383e4 93 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 8 55 6.5E-29 T 21-04-2016 IPR005728 Rickettsial palindromic element RAF_RS02790 8ed71b1a0641f93a3aa4bcdb1852fec9 331 Gene3D G3DSA:3.10.50.40 111 187 2.6E-7 T 21-04-2016 RAF_RS02790 8ed71b1a0641f93a3aa4bcdb1852fec9 331 SUPERFAMILY SSF54534 113 195 8.64E-11 T 21-04-2016 RAF_RS02790 8ed71b1a0641f93a3aa4bcdb1852fec9 331 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 128 188 1.5E-6 T 21-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 RAF_RS00850 30efd1e6476018724b2e08c1a87e95ba 346 TIGRFAM TIGR01933 hflK: HflK protein 67 336 2.3E-70 T 21-04-2016 IPR010201 HflK GO:0016021 RAF_RS00850 30efd1e6476018724b2e08c1a87e95ba 346 PANTHER PTHR10264:SF51 51 118 3.4E-79 T 21-04-2016 IPR010201 HflK GO:0016021 RAF_RS00850 30efd1e6476018724b2e08c1a87e95ba 346 PANTHER PTHR10264:SF51 140 336 3.4E-79 T 21-04-2016 IPR010201 HflK GO:0016021 RAF_RS00850 30efd1e6476018724b2e08c1a87e95ba 346 PANTHER PTHR10264 51 118 3.4E-79 T 21-04-2016 IPR001972 Stomatin family GO:0016020 RAF_RS00850 30efd1e6476018724b2e08c1a87e95ba 346 PANTHER PTHR10264 140 336 3.4E-79 T 21-04-2016 IPR001972 Stomatin family GO:0016020 RAF_RS00850 30efd1e6476018724b2e08c1a87e95ba 346 SMART SM00244 65 246 1.0E-31 T 21-04-2016 IPR001107 Band 7 domain RAF_RS00850 30efd1e6476018724b2e08c1a87e95ba 346 SUPERFAMILY SSF117892 140 252 2.88E-16 T 21-04-2016 IPR001107 Band 7 domain RAF_RS00850 30efd1e6476018724b2e08c1a87e95ba 346 Pfam PF01145 SPFH domain / Band 7 family 69 261 3.8E-25 T 21-04-2016 IPR001107 Band 7 domain RAF_RS03795 07085cabd5d8b465890e9abe316c90e6 61 Gene3D G3DSA:3.90.550.10 5 52 1.4E-4 T 21-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RAF_RS00845 8d7a1e26aaa2a7280fa8ec1300fdd005 319 SUPERFAMILY SSF52540 83 307 1.12E-49 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00845 8d7a1e26aaa2a7280fa8ec1300fdd005 319 Hamap MF_02040 Iron-sulfur cluster carrier protein. 90 318 33.438 T 21-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein RAF_RS00845 8d7a1e26aaa2a7280fa8ec1300fdd005 319 Gene3D G3DSA:3.40.50.300 87 307 3.4E-80 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS00845 8d7a1e26aaa2a7280fa8ec1300fdd005 319 PANTHER PTHR23264 94 306 3.9E-96 T 21-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein RAF_RS00845 8d7a1e26aaa2a7280fa8ec1300fdd005 319 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 95 306 2.2E-78 T 21-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein RAF_RS00845 8d7a1e26aaa2a7280fa8ec1300fdd005 319 ProSitePatterns PS01215 Mrp family signature. 201 217 - T 21-04-2016 IPR000808 Mrp, conserved site GO:0005524 RAF_RS06150 cb5604f06f421a18bc61947d4a6d907d 517 PANTHER PTHR12778 106 509 1.6E-52 T 21-04-2016 RAF_RS06150 cb5604f06f421a18bc61947d4a6d907d 517 Pfam PF07690 Major Facilitator Superfamily 106 413 1.1E-15 T 21-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAF_RS06150 cb5604f06f421a18bc61947d4a6d907d 517 SUPERFAMILY SSF103473 99 509 7.46E-29 T 21-04-2016 IPR020846 Major facilitator superfamily domain RAF_RS06150 cb5604f06f421a18bc61947d4a6d907d 517 Gene3D G3DSA:1.20.1250.20 102 295 7.4E-7 T 21-04-2016 RAF_RS06150 cb5604f06f421a18bc61947d4a6d907d 517 Gene3D G3DSA:1.20.1250.20 324 507 2.9E-12 T 21-04-2016 RAF_RS04770 22bc56cbef8085e87bf2327c5c7004a2 646 SUPERFAMILY SSF48403 369 501 3.23E-5 T 21-04-2016 IPR020683 Ankyrin repeat-containing domain RAF_RS04770 22bc56cbef8085e87bf2327c5c7004a2 646 SUPERFAMILY SSF48403 271 389 4.64E-5 T 21-04-2016 IPR020683 Ankyrin repeat-containing domain RAF_RS06595 abf4c7fc846021825a9975e421942958 953 Pfam PF00005 ABC transporter 818 872 7.0E-5 T 21-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAF_RS06595 abf4c7fc846021825a9975e421942958 953 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 6 937 0.0 T 21-04-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 RAF_RS06595 abf4c7fc846021825a9975e421942958 953 ProSitePatterns PS00211 ABC transporters family signature. 842 856 - T 21-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAF_RS06595 abf4c7fc846021825a9975e421942958 953 ProSitePatterns PS00211 ABC transporters family signature. 499 513 - T 21-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAF_RS06595 abf4c7fc846021825a9975e421942958 953 Hamap MF_00205 UvrABC system protein A [uvrA]. 3 952 22.666 T 21-04-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 RAF_RS06595 abf4c7fc846021825a9975e421942958 953 Gene3D G3DSA:3.30.1490.20 202 241 1.3E-20 T 21-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RAF_RS06595 abf4c7fc846021825a9975e421942958 953 Gene3D G3DSA:3.30.1490.20 132 155 1.3E-20 T 21-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 RAF_RS06595 abf4c7fc846021825a9975e421942958 953 SUPERFAMILY SSF52540 443 581 2.82E-47 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06595 abf4c7fc846021825a9975e421942958 953 SUPERFAMILY SSF52540 6 206 2.82E-47 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06595 abf4c7fc846021825a9975e421942958 953 PANTHER PTHR32282:SF2 2 952 0.0 T 21-04-2016 RAF_RS06595 abf4c7fc846021825a9975e421942958 953 Gene3D G3DSA:1.20.1580.10 261 294 2.3E-49 T 21-04-2016 RAF_RS06595 abf4c7fc846021825a9975e421942958 953 Gene3D G3DSA:1.20.1580.10 93 131 2.3E-49 T 21-04-2016 RAF_RS06595 abf4c7fc846021825a9975e421942958 953 Gene3D G3DSA:1.20.1580.10 417 489 2.3E-49 T 21-04-2016 RAF_RS06595 abf4c7fc846021825a9975e421942958 953 SUPERFAMILY SSF52540 634 922 4.23E-50 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06595 abf4c7fc846021825a9975e421942958 953 Gene3D G3DSA:1.20.1580.10 706 832 2.7E-51 T 21-04-2016 RAF_RS06595 abf4c7fc846021825a9975e421942958 953 Gene3D G3DSA:3.40.50.300 5 53 5.0E-57 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06595 abf4c7fc846021825a9975e421942958 953 Gene3D G3DSA:3.40.50.300 617 684 7.9E-59 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06595 abf4c7fc846021825a9975e421942958 953 Gene3D G3DSA:3.40.50.300 490 608 5.0E-57 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06595 abf4c7fc846021825a9975e421942958 953 Gene3D G3DSA:3.40.50.300 833 951 7.9E-59 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS06595 abf4c7fc846021825a9975e421942958 953 PANTHER PTHR32282 2 952 0.0 T 21-04-2016 RAF_RS06595 abf4c7fc846021825a9975e421942958 953 Gene3D G3DSA:1.10.8.280 298 416 1.7E-29 T 21-04-2016 RAF_RS02975 c921a326fa28b0e5eb5c64f16a3e71ba 77 Pfam PF12784 PD-(D/E)XK nuclease family transposase 4 76 8.7E-14 T 21-04-2016 RAF_RS01085 75ef6e0128ddcca2c0d999aed13280f0 146 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 10 138 1.3E-24 T 21-04-2016 IPR005031 Coenzyme Q-binding protein COQ10, START domain RAF_RS01085 75ef6e0128ddcca2c0d999aed13280f0 146 SUPERFAMILY SSF55961 1 144 1.12E-27 T 21-04-2016 RAF_RS01085 75ef6e0128ddcca2c0d999aed13280f0 146 PANTHER PTHR12901 7 144 2.1E-44 T 21-04-2016 RAF_RS01085 75ef6e0128ddcca2c0d999aed13280f0 146 Gene3D G3DSA:3.30.530.20 3 145 1.0E-41 T 21-04-2016 IPR023393 START-like domain RAF_RS05955 547089503fea381ed37abc6ca94535ec 413 Gene3D G3DSA:1.20.1250.20 9 211 5.5E-18 T 21-04-2016 RAF_RS05955 547089503fea381ed37abc6ca94535ec 413 Gene3D G3DSA:1.20.1250.20 234 410 1.1E-6 T 21-04-2016 RAF_RS05955 547089503fea381ed37abc6ca94535ec 413 Pfam PF07690 Major Facilitator Superfamily 14 354 2.4E-24 T 21-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAF_RS05955 547089503fea381ed37abc6ca94535ec 413 SUPERFAMILY SSF103473 1 412 1.22E-44 T 21-04-2016 IPR020846 Major facilitator superfamily domain RAF_RS05955 547089503fea381ed37abc6ca94535ec 413 PANTHER PTHR23508 5 413 4.6E-76 T 21-04-2016 RAF_RS01835 fac9e7ca927c0eb67f5624e8df2d465a 106 PANTHER PTHR34703 1 94 1.1E-15 T 21-04-2016 RAF_RS01835 fac9e7ca927c0eb67f5624e8df2d465a 106 PANTHER PTHR34703:SF1 1 94 1.1E-15 T 21-04-2016 RAF_RS01835 fac9e7ca927c0eb67f5624e8df2d465a 106 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 10 99 4.0E-29 T 21-04-2016 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 RAF_RS01835 fac9e7ca927c0eb67f5624e8df2d465a 106 Pfam PF03334 Na+/H+ antiporter subunit 10 88 3.1E-23 T 21-04-2016 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 RAF_RS01490 61c64fa124a52c205d46a1dac65d20fd 90 ProDom PD197819 RP215 1 89 1.0E-46 T 21-04-2016 IPR022715 Protein of unknown function DUF2671 RAF_RS01490 61c64fa124a52c205d46a1dac65d20fd 90 Pfam PF10877 Protein of unknown function (DUF2671) 1 90 4.0E-61 T 21-04-2016 IPR022715 Protein of unknown function DUF2671 RAF_RS04260 d8dc33184dd22c0ee05685535846550e 74 SUPERFAMILY SSF48317 15 69 1.05E-8 T 21-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RAF_RS04260 d8dc33184dd22c0ee05685535846550e 74 Gene3D G3DSA:1.20.144.10 16 69 3.2E-7 T 21-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RAF_RS03295 261966cf0f0bda8307271b5e8212820a 78 Pfam PF00577 Outer membrane usher protein 10 62 6.1E-5 T 21-04-2016 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 RAF_RS03015 32ef8d97bd235f64a844d4f3ec0dcfe9 167 Pfam PF12100 Domain of unknown function (DUF3576) 64 162 1.9E-36 T 21-04-2016 IPR021959 Protein of unknown function DUF3576 RAF_RS06745 ca5c42e3c477c4ea175e63644fa14e7a 211 ProDom PD209763 TRANSMEMBRANE RP854 MEMBRANE 1 211 9.0E-106 T 21-04-2016 IPR020135 Uncharacterised protein family RP854 RAF_RS00705 19e17a62a9634ac882e754b689b08790 97 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 56 4.2E-22 T 21-04-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00705 19e17a62a9634ac882e754b689b08790 97 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 68 19.901 T 21-04-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RAF_RS00705 19e17a62a9634ac882e754b689b08790 97 Gene3D G3DSA:2.30.170.40 2 76 2.9E-24 T 21-04-2016 RAF_RS00705 19e17a62a9634ac882e754b689b08790 97 Pfam PF00830 Ribosomal L28 family 3 61 4.6E-18 T 21-04-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 RAF_RS00705 19e17a62a9634ac882e754b689b08790 97 PANTHER PTHR13528 1 90 1.5E-21 T 21-04-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 RAF_RS00705 19e17a62a9634ac882e754b689b08790 97 SUPERFAMILY SSF143800 1 84 2.16E-22 T 21-04-2016 RAF_RS01795 01a1a0a9e2414ea4730e7c1a80ce6aee 271 PANTHER PTHR22748:SF7 1 263 1.5E-81 T 21-04-2016 RAF_RS01795 01a1a0a9e2414ea4730e7c1a80ce6aee 271 PANTHER PTHR22748 1 263 1.5E-81 T 21-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 RAF_RS01795 01a1a0a9e2414ea4730e7c1a80ce6aee 271 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 27 36 - T 21-04-2016 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 RAF_RS01795 01a1a0a9e2414ea4730e7c1a80ce6aee 271 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 252 5.5E-24 T 21-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RAF_RS01795 01a1a0a9e2414ea4730e7c1a80ce6aee 271 SUPERFAMILY SSF56219 1 261 2.22E-65 T 21-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RAF_RS01795 01a1a0a9e2414ea4730e7c1a80ce6aee 271 Gene3D G3DSA:3.60.10.10 1 260 2.9E-64 T 21-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase RAF_RS01795 01a1a0a9e2414ea4730e7c1a80ce6aee 271 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 260 4.1E-57 T 21-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 RAF_RS01795 01a1a0a9e2414ea4730e7c1a80ce6aee 271 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 259 1.0E-60 T 21-04-2016 RAF_RS00875 c4ba88108579920765d18098e8d9bc3a 126 SUPERFAMILY SSF81343 14 123 7.85E-25 T 21-04-2016 RAF_RS00875 c4ba88108579920765d18098e8d9bc3a 126 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 13 116 8.6E-14 T 21-04-2016 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit GO:0016627 UniPathway: UPA00223 RAF_RS00875 c4ba88108579920765d18098e8d9bc3a 126 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 18 123 9.8E-28 T 21-04-2016 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 UniPathway: UPA00223 RAF_RS00875 c4ba88108579920765d18098e8d9bc3a 126 Gene3D G3DSA:1.20.1300.10 11 123 1.9E-28 T 21-04-2016 RAF_RS05570 a11cee91a150c9213f8d553d8eb09825 321 Gene3D G3DSA:3.40.50.300 49 148 6.9E-4 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05570 a11cee91a150c9213f8d553d8eb09825 321 PANTHER PTHR30160 5 317 1.7E-40 T 21-04-2016 RAF_RS05570 a11cee91a150c9213f8d553d8eb09825 321 SUPERFAMILY SSF52540 46 149 7.54E-9 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05570 a11cee91a150c9213f8d553d8eb09825 321 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 17 319 1.7E-75 T 21-04-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 RAF_RS05570 a11cee91a150c9213f8d553d8eb09825 321 PANTHER PTHR30160:SF13 5 317 1.7E-40 T 21-04-2016 RAF_RS05570 a11cee91a150c9213f8d553d8eb09825 321 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 16 320 1.3E-108 T 21-04-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 RAF_RS05570 a11cee91a150c9213f8d553d8eb09825 321 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 5 318 29.581 T 21-04-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 RAF_RS00545 733dae8eead44ea57f3c609bbd36c6a6 465 PANTHER PTHR10160:SF24 4 465 6.4E-215 T 21-04-2016 RAF_RS00545 733dae8eead44ea57f3c609bbd36c6a6 465 SUPERFAMILY SSF52467 295 464 3.27E-71 T 21-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RAF_RS00545 733dae8eead44ea57f3c609bbd36c6a6 465 PANTHER PTHR10160 4 465 6.4E-215 T 21-04-2016 RAF_RS00545 733dae8eead44ea57f3c609bbd36c6a6 465 Gene3D G3DSA:3.40.50.1220 294 463 8.2E-84 T 21-04-2016 IPR029035 DHS-like NAD/FAD-binding domain RAF_RS00545 733dae8eead44ea57f3c609bbd36c6a6 465 PIRSF PIRSF000204 1 464 1.3E-219 T 21-04-2016 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 RAF_RS00545 733dae8eead44ea57f3c609bbd36c6a6 465 Pfam PF02233 NAD(P) transhydrogenase beta subunit 7 460 4.2E-183 T 21-04-2016 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 RAF_RS03915 3b991b9652d9dfb53239fbc4ea8189c2 335 TIGRFAM TIGR03774 RPE2: rickettsial palindromic element RPE2 domain 34 68 4.1E-18 T 21-04-2016 IPR022436 Rickettsia palindromic element RPE2 RAF_RS03915 3b991b9652d9dfb53239fbc4ea8189c2 335 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 246 333 7.2E-11 T 21-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RAF_RS03915 3b991b9652d9dfb53239fbc4ea8189c2 335 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 216 271 2.9E-19 T 21-04-2016 IPR017703 YgfZ/GcvT conserved site RAF_RS03915 3b991b9652d9dfb53239fbc4ea8189c2 335 Gene3D G3DSA:3.30.70.1400 9 30 2.3E-15 T 21-04-2016 RAF_RS03915 3b991b9652d9dfb53239fbc4ea8189c2 335 Gene3D G3DSA:3.30.70.1400 63 125 2.3E-15 T 21-04-2016 RAF_RS03915 3b991b9652d9dfb53239fbc4ea8189c2 335 PANTHER PTHR22602 1 33 9.6E-60 T 21-04-2016 RAF_RS03915 3b991b9652d9dfb53239fbc4ea8189c2 335 PANTHER PTHR22602 59 318 9.6E-60 T 21-04-2016 RAF_RS03915 3b991b9652d9dfb53239fbc4ea8189c2 335 PANTHER PTHR22602:SF0 1 33 9.6E-60 T 21-04-2016 RAF_RS03915 3b991b9652d9dfb53239fbc4ea8189c2 335 PANTHER PTHR22602:SF0 59 318 9.6E-60 T 21-04-2016 RAF_RS03915 3b991b9652d9dfb53239fbc4ea8189c2 335 SUPERFAMILY SSF103025 70 262 1.08E-41 T 21-04-2016 RAF_RS03915 3b991b9652d9dfb53239fbc4ea8189c2 335 SUPERFAMILY SSF103025 4 37 1.08E-41 T 21-04-2016 RAF_RS01270 30b06282960973306980b40c03b24b75 118 Pfam PF04956 TrbC/VIRB2 family 16 106 4.1E-18 T 21-04-2016 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 RAF_RS06215 2b0e70130a9b6111b322aca7372631fc 493 Pfam PF00361 Proton-conducting membrane transporter 136 423 2.2E-83 T 21-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 RAF_RS06215 2b0e70130a9b6111b322aca7372631fc 493 PANTHER PTHR22773:SF40 1 490 1.3E-195 T 21-04-2016 RAF_RS06215 2b0e70130a9b6111b322aca7372631fc 493 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 331 350 9.2E-47 T 21-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RAF_RS06215 2b0e70130a9b6111b322aca7372631fc 493 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 142 161 9.2E-47 T 21-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RAF_RS06215 2b0e70130a9b6111b322aca7372631fc 493 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 383 409 9.2E-47 T 21-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RAF_RS06215 2b0e70130a9b6111b322aca7372631fc 493 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 172 196 9.2E-47 T 21-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RAF_RS06215 2b0e70130a9b6111b322aca7372631fc 493 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 243 267 9.2E-47 T 21-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 RAF_RS06215 2b0e70130a9b6111b322aca7372631fc 493 PANTHER PTHR22773 1 490 1.3E-195 T 21-04-2016 RAF_RS06215 2b0e70130a9b6111b322aca7372631fc 493 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 8 491 9.5E-187 T 21-04-2016 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 RAF_RS02705 d43dd16916e5df6a19d4be8eb7ab992f 507 SUPERFAMILY SSF81442 9 503 9.94E-38 T 21-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RAF_RS02705 d43dd16916e5df6a19d4be8eb7ab992f 507 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 20 480 2.6E-13 T 21-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 RAF_RS06555 8895d30c08f0c13d6de4d682f64ba01e 159 Pfam PF05433 Glycine zipper 2TM domain 31 72 7.5E-9 T 21-04-2016 IPR008816 Glycine zipper 2TM domain GO:0019867 RAF_RS06555 8895d30c08f0c13d6de4d682f64ba01e 159 PIRSF PIRSF002721 4 159 5.2E-59 T 21-04-2016 IPR016364 Surface antigen, Rickettsia type RAF_RS06555 8895d30c08f0c13d6de4d682f64ba01e 159 Pfam PF16998 17 kDa outer membrane surface antigen 86 158 1.5E-10 T 21-04-2016 IPR032635 Surface antigen domain RAF_RS00670 47a334ea76e4fe16fc345be1bf1d40f2 82 ProDom PD195745 TRANSMEMBRANE MEMBRANE RC0131 RP098 1 82 3.0E-30 T 21-04-2016 RAF_RS06880 93ca4e0332d1d6fc69a11af2a4bc1138 132 Pfam PF02384 N-6 DNA Methylase 27 128 2.4E-15 T 21-04-2016 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 RAF_RS06880 93ca4e0332d1d6fc69a11af2a4bc1138 132 SUPERFAMILY SSF53335 2 128 2.69E-25 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS06880 93ca4e0332d1d6fc69a11af2a4bc1138 132 Gene3D G3DSA:3.40.50.150 8 124 5.8E-18 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS05785 dfd27c9e2f271b9746bcd3acba093acf 499 PANTHER PTHR31187 11 489 8.5E-96 T 21-04-2016 IPR004667 ADP/ATP carrier protein GO:0005471|GO:0005524|GO:0006810|GO:0016021 RAF_RS05785 dfd27c9e2f271b9746bcd3acba093acf 499 TIGRFAM TIGR00769 AAA: ADP/ATP carrier protein family 20 492 3.9E-122 T 21-04-2016 IPR004667 ADP/ATP carrier protein GO:0005471|GO:0005524|GO:0006810|GO:0016021 RAF_RS05785 dfd27c9e2f271b9746bcd3acba093acf 499 Pfam PF03219 TLC ATP/ADP transporter 6 495 3.2E-183 T 21-04-2016 IPR004667 ADP/ATP carrier protein GO:0005471|GO:0005524|GO:0006810|GO:0016021 RAF_RS06345 f5d6f455830e3516979f13bab079b05e 108 SUPERFAMILY SSF81301 5 107 3.6E-29 T 21-04-2016 RAF_RS06345 f5d6f455830e3516979f13bab079b05e 108 PANTHER PTHR21043 2 106 6.4E-26 T 21-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS RAF_RS06345 f5d6f455830e3516979f13bab079b05e 108 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 11 106 3.9E-30 T 21-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS RAF_RS06345 f5d6f455830e3516979f13bab079b05e 108 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 5 107 21.611 T 21-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS RAF_RS06345 f5d6f455830e3516979f13bab079b05e 108 Pfam PF02410 Ribosomal silencing factor during starvation 12 106 1.5E-23 T 21-04-2016 RAF_RS06345 f5d6f455830e3516979f13bab079b05e 108 Gene3D G3DSA:3.30.460.10 5 107 1.9E-30 T 21-04-2016 RAF_RS02755 28ec95550c780be09ede9f6bcc4e8d2d 414 Gene3D G3DSA:1.20.1250.20 11 200 3.6E-15 T 21-04-2016 RAF_RS02755 28ec95550c780be09ede9f6bcc4e8d2d 414 Gene3D G3DSA:1.20.1250.20 225 410 1.0E-15 T 21-04-2016 RAF_RS02755 28ec95550c780be09ede9f6bcc4e8d2d 414 Pfam PF07690 Major Facilitator Superfamily 15 242 5.2E-14 T 21-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAF_RS02755 28ec95550c780be09ede9f6bcc4e8d2d 414 PANTHER PTHR12778 15 406 2.3E-74 T 21-04-2016 RAF_RS02755 28ec95550c780be09ede9f6bcc4e8d2d 414 SUPERFAMILY SSF103473 11 410 7.59E-36 T 21-04-2016 IPR020846 Major facilitator superfamily domain RAF_RS07100 9a62f2209bcc1a30e83c93c96912dd64 133 Pfam PF00483 Nucleotidyl transferase 1 131 1.1E-18 T 21-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 RAF_RS07100 9a62f2209bcc1a30e83c93c96912dd64 133 Gene3D G3DSA:3.90.550.10 1 132 7.2E-26 T 21-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RAF_RS07100 9a62f2209bcc1a30e83c93c96912dd64 133 SUPERFAMILY SSF53448 1 132 2.69E-19 T 21-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases RAF_RS05350 affc898f87ba99ab8cec2b1dcfbec943 203 SUPERFAMILY SSF52540 5 202 9.71E-51 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05350 affc898f87ba99ab8cec2b1dcfbec943 203 Gene3D G3DSA:3.40.50.300 6 202 2.4E-55 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS05350 affc898f87ba99ab8cec2b1dcfbec943 203 ProSitePatterns PS01331 Thymidylate kinase signature. 94 106 - T 21-04-2016 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 RAF_RS05350 affc898f87ba99ab8cec2b1dcfbec943 203 Hamap MF_00165 Thymidylate kinase [tmk]. 8 203 24.688 T 21-04-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 RAF_RS05350 affc898f87ba99ab8cec2b1dcfbec943 203 Pfam PF02223 Thymidylate kinase 12 199 2.2E-55 T 21-04-2016 RAF_RS05350 affc898f87ba99ab8cec2b1dcfbec943 203 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 5 189 1.1E-44 T 21-04-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 RAF_RS05350 affc898f87ba99ab8cec2b1dcfbec943 203 PANTHER PTHR10344 5 203 4.1E-44 T 21-04-2016 RAF_RS01650 b25093500109f355a49a3c6404d1a430 66 Gene3D G3DSA:3.30.1380.10 25 65 7.5E-7 T 21-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain RAF_RS01650 b25093500109f355a49a3c6404d1a430 66 SUPERFAMILY SSF55166 25 65 3.14E-5 T 21-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain RAF_RS06110 8453af5a4f9725558fb47cd47c15f328 64 Gene3D G3DSA:3.30.300.10 11 56 3.9E-18 T 21-04-2016 RAF_RS06110 8453af5a4f9725558fb47cd47c15f328 64 SUPERFAMILY SSF55973 3 58 2.51E-23 T 21-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RAF_RS06110 8453af5a4f9725558fb47cd47c15f328 64 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 3 57 1.3E-22 T 21-04-2016 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RAF_RS06110 8453af5a4f9725558fb47cd47c15f328 64 PANTHER PTHR11964 1 55 2.2E-29 T 21-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 RAF_RS02565 3d60ec8b6c587a51147072ef98eda061 240 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 21-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RAF_RS02565 3d60ec8b6c587a51147072ef98eda061 240 PANTHER PTHR24220:SF534 6 223 7.6E-48 T 21-04-2016 RAF_RS02565 3d60ec8b6c587a51147072ef98eda061 240 Gene3D G3DSA:3.40.50.300 4 221 5.0E-47 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02565 3d60ec8b6c587a51147072ef98eda061 240 SUPERFAMILY SSF52540 3 222 8.6E-45 T 21-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase RAF_RS02565 3d60ec8b6c587a51147072ef98eda061 240 Pfam PF00005 ABC transporter 25 170 7.8E-25 T 21-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RAF_RS02565 3d60ec8b6c587a51147072ef98eda061 240 PANTHER PTHR24220 6 223 7.6E-48 T 21-04-2016 RAF_RS02565 3d60ec8b6c587a51147072ef98eda061 240 SMART SM00382 31 228 1.2E-12 T 21-04-2016 IPR003593 AAA+ ATPase domain RAF_RS06305 476e128de636df41419337f4a6d68699 90 ProSitePatterns PS00337 Beta-lactamase class-D active site. 16 26 - T 21-04-2016 IPR002137 Beta-lactamase, class-D active site GO:0008800|GO:0017001 KEGG: 00311+3.5.2.6 RAF_RS06305 476e128de636df41419337f4a6d68699 90 SUPERFAMILY SSF56601 7 89 4.83E-11 T 21-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RAF_RS06305 476e128de636df41419337f4a6d68699 90 Gene3D G3DSA:3.40.710.10 4 89 3.7E-27 T 21-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RAF_RS06305 476e128de636df41419337f4a6d68699 90 Pfam PF00905 Penicillin binding protein transpeptidase domain 8 89 7.0E-18 T 21-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RAF_RS00790 d63770af4257647ad9385b6e8da17ee3 78 Pfam PF10073 Uncharacterized protein conserved in bacteria (DUF2312) 7 77 5.7E-27 T 21-04-2016 IPR018753 Azospirillum phage Cd, Gp10 RAF_RS00790 d63770af4257647ad9385b6e8da17ee3 78 Hamap MF_00797 UPF0335 protein . 1 78 20.546 T 21-04-2016 IPR018753 Azospirillum phage Cd, Gp10 RAF_RS02385 057fb5ac53c124706f66e0291cdb1190 264 Pfam PF11019 Protein of unknown function (DUF2608) 7 249 3.9E-57 T 21-04-2016 IPR022565 Protein of unknown function DUF2608 RAF_RS02385 057fb5ac53c124706f66e0291cdb1190 264 Gene3D G3DSA:3.40.50.1000 25 199 1.9E-5 T 21-04-2016 IPR023214 HAD-like domain RAF_RS02385 057fb5ac53c124706f66e0291cdb1190 264 ProDom PD187055 MEMBRANE OUTER PRECURSOR SIGNAL EXPORTED CT371 CPN1072 CPN1073/CP0776/CPJ1073/CPB1118 CP0777 CPJ1072 122 239 9.0E-7 T 21-04-2016 RAF_RS05870 47649f69304d24e4c4f39423cd7a6d84 58 Pfam PF08085 Entericidin EcnA/B family 21 41 2.8E-9 T 21-04-2016 IPR012556 Entericidin A/B GO:0009636|GO:0016020 RAF_RS02500 b88abc1d6119b22836ed90118b6f0f42 157 Pfam PF09923 Uncharacterized protein conserved in bacteria (DUF2155) 67 156 9.1E-17 T 21-04-2016 IPR019225 Protein of unknown function DUF2155 RAF_RS01940 eec3f1055a9c218517ed41b7e33993cc 233 SUPERFAMILY SSF48371 15 197 1.27E-7 T 21-04-2016 IPR016024 Armadillo-type fold GO:0005488 RAF_RS01940 eec3f1055a9c218517ed41b7e33993cc 233 Gene3D G3DSA:1.25.10.10 9 137 3.4E-6 T 21-04-2016 IPR011989 Armadillo-like helical RAF_RS03700 10fb3122d98a053a044bb8cf19e21732 55 Pfam PF04754 Putative transposase, YhgA-like 1 52 3.3E-9 T 21-04-2016 IPR006842 Transposase (putative), YhgA-like RAF_RS00255 71ddb47e1e7b7931582f8b182872a34c 440 ProDom PD216750 RP034 RC0048 19 440 0.0 T 21-04-2016 IPR020183 Uncharacterised protein family RC0048 RAF_RS00255 71ddb47e1e7b7931582f8b182872a34c 440 Pfam PF10871 Protein of unknown function (DUF2748) 1 440 1.8E-253 T 21-04-2016 IPR020183 Uncharacterised protein family RC0048 RAF_RS01100 f791db5dc0183bdc42cabdd4e3b8382b 78 Pfam PF04070 Domain of unknown function (DUF378) 14 65 1.1E-16 T 21-04-2016 IPR007211 Protein of unknown function DUF378 RAF_RS06495 86c3061fde38d02174962265a618bd41 289 Pfam PF01757 Acyltransferase family 4 245 1.0E-8 T 21-04-2016 IPR002656 Acyltransferase 3 GO:0016747 RAF_RS02015 88b3b12b8e47f70d34daa1438ad22a9e 243 Pfam PF04335 VirB8 protein 37 241 6.1E-47 T 21-04-2016 IPR007430 Bacterial virulence protein VirB8 GO:0016020 RAF_RS02015 88b3b12b8e47f70d34daa1438ad22a9e 243 PIRSF PIRSF003299 21 242 4.7E-39 T 21-04-2016 IPR026264 Type IV secretion system protein VirB8/PtlE GO:0030255 RAF_RS02015 88b3b12b8e47f70d34daa1438ad22a9e 243 SUPERFAMILY SSF54427 107 241 5.26E-24 T 21-04-2016 IPR032710 NTF2-like domain RAF_RS05180 bb4532d36c3e23f4c2c7ec32e6740a3e 107 Gene3D G3DSA:3.40.50.1010 5 83 1.3E-14 T 21-04-2016 IPR029060 PIN domain-like RAF_RS05180 bb4532d36c3e23f4c2c7ec32e6740a3e 107 SUPERFAMILY SSF88723 7 90 7.85E-5 T 21-04-2016 IPR029060 PIN domain-like RAF_RS04660 d0bbdc321bacdd4cf5c75914a6e447cf 123 Pfam PF00581 Rhodanese-like domain 11 107 7.5E-6 T 21-04-2016 IPR001763 Rhodanese-like domain RAF_RS04660 d0bbdc321bacdd4cf5c75914a6e447cf 123 Gene3D G3DSA:3.40.250.10 3 122 2.6E-39 T 21-04-2016 IPR001763 Rhodanese-like domain RAF_RS04660 d0bbdc321bacdd4cf5c75914a6e447cf 123 SUPERFAMILY SSF52821 5 121 1.13E-17 T 21-04-2016 IPR001763 Rhodanese-like domain RAF_RS04660 d0bbdc321bacdd4cf5c75914a6e447cf 123 SMART SM00450 7 114 4.6E-12 T 21-04-2016 IPR001763 Rhodanese-like domain RAF_RS06450 2b6fa882d1f4f415d8bd2b99fcf24652 93 Pfam PF09361 Phasin protein 25 85 6.4E-7 T 21-04-2016 IPR018968 Phasin RAF_RS02425 fddac26053b955e2abfdaed92d0e2647 119 SUPERFAMILY SSF48439 5 76 5.75E-8 T 21-04-2016 RAF_RS02425 fddac26053b955e2abfdaed92d0e2647 119 Gene3D G3DSA:1.25.40.10 3 87 3.7E-9 T 21-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RAF_RS04115 590f011d6f3863d7b70f7b59f6e0b408 34 Pfam PF03222 Tryptophan/tyrosine permease family 2 32 4.3E-7 T 21-04-2016 IPR018227 Tryptophan/tyrosine permease GO:0003333 RAF_RS00615 2d1b1b51c29e420a4a2d0daab90b8d6c 464 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 56 91 5.7E-15 T 21-04-2016 IPR005728 Rickettsial palindromic element RAF_RS00615 2d1b1b51c29e420a4a2d0daab90b8d6c 464 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 95 254 5.5E-45 T 21-04-2016 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675|UniPathway: UPA00958 RAF_RS00615 2d1b1b51c29e420a4a2d0daab90b8d6c 464 PANTHER PTHR23417:SF2 95 158 7.0E-56 T 21-04-2016 RAF_RS00615 2d1b1b51c29e420a4a2d0daab90b8d6c 464 PANTHER PTHR23417:SF2 177 187 7.0E-56 T 21-04-2016 RAF_RS00615 2d1b1b51c29e420a4a2d0daab90b8d6c 464 PANTHER PTHR23417:SF2 236 464 7.0E-56 T 21-04-2016 RAF_RS00615 2d1b1b51c29e420a4a2d0daab90b8d6c 464 PANTHER PTHR23417 95 158 7.0E-56 T 21-04-2016 RAF_RS00615 2d1b1b51c29e420a4a2d0daab90b8d6c 464 PANTHER PTHR23417 177 187 7.0E-56 T 21-04-2016 RAF_RS00615 2d1b1b51c29e420a4a2d0daab90b8d6c 464 PANTHER PTHR23417 236 464 7.0E-56 T 21-04-2016 RAF_RS00615 2d1b1b51c29e420a4a2d0daab90b8d6c 464 SUPERFAMILY SSF53756 96 327 4.71E-5 T 21-04-2016 RAF_RS03400 db0f831531e681fa1ed596851d483020 1028 Pfam PF12574 120 KDa Rickettsia surface antigen 106 354 1.6E-138 T 21-04-2016 IPR020954 Rickettsia surface antigen, 120kDa RAF_RS06300 28c28a7ff8e8d623281bc7240ecf5fe6 100 Gene3D G3DSA:3.40.710.10 1 94 1.1E-18 T 21-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RAF_RS06300 28c28a7ff8e8d623281bc7240ecf5fe6 100 Pfam PF00905 Penicillin binding protein transpeptidase domain 3 89 1.9E-8 T 21-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RAF_RS06300 28c28a7ff8e8d623281bc7240ecf5fe6 100 SUPERFAMILY SSF56601 19 95 1.52E-8 T 21-04-2016 IPR012338 Beta-lactamase/transpeptidase-like RAF_RS02895 adacac3f17707847ee7af46d87372071 59 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 12 54 1.0E-19 T 21-04-2016 IPR005728 Rickettsial palindromic element RAF_RS05410 94add6e3ca107113c6d1e8d09543a8d8 105 Pfam PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) 1 100 3.8E-13 T 21-04-2016 IPR002654 Glycosyl transferase, family 25 RAF_RS00640 6a36492ca4c91917ceb23b7546c06a56 199 Gene3D G3DSA:3.10.450.50 111 170 1.1E-8 T 21-04-2016 IPR032710 NTF2-like domain RAF_RS00640 6a36492ca4c91917ceb23b7546c06a56 199 Gene3D G3DSA:3.10.450.50 30 67 1.1E-8 T 21-04-2016 IPR032710 NTF2-like domain RAF_RS00640 6a36492ca4c91917ceb23b7546c06a56 199 Gene3D G3DSA:1.10.10.640 68 108 6.4E-9 T 21-04-2016 IPR023094 Toluene tolerance protein, alpha-helical RAF_RS00640 6a36492ca4c91917ceb23b7546c06a56 199 Gene3D G3DSA:1.10.10.640 171 198 6.4E-9 T 21-04-2016 IPR023094 Toluene tolerance protein, alpha-helical RAF_RS00640 6a36492ca4c91917ceb23b7546c06a56 199 PANTHER PTHR36573 1 198 1.4E-14 T 21-04-2016 RAF_RS00640 6a36492ca4c91917ceb23b7546c06a56 199 Pfam PF05494 MlaC protein 33 196 2.9E-36 T 21-04-2016 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC RAF_RS00950 6164f911b1f00c8488f9ef21309757e1 389 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 236 283 2.2E-29 T 21-04-2016 IPR005728 Rickettsial palindromic element RAF_RS03390 f93e5a53b06fbee070b002fc72bf3fc6 345 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 262 309 4.6E-29 T 21-04-2016 IPR005728 Rickettsial palindromic element RAF_RS03390 f93e5a53b06fbee070b002fc72bf3fc6 345 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 24 173 7.8E-51 T 21-04-2016 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 RAF_RS03390 f93e5a53b06fbee070b002fc72bf3fc6 345 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 6 209 3.6E-65 T 21-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAF_RS03390 f93e5a53b06fbee070b002fc72bf3fc6 345 PANTHER PTHR13767 5 252 5.5E-84 T 21-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAF_RS03390 f93e5a53b06fbee070b002fc72bf3fc6 345 PANTHER PTHR13767:SF2 5 252 5.5E-84 T 21-04-2016 RAF_RS03390 f93e5a53b06fbee070b002fc72bf3fc6 345 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 174 214 6.0E-8 T 21-04-2016 IPR032819 tRNA pseudouridylate synthase B, C-terminal RAF_RS03390 f93e5a53b06fbee070b002fc72bf3fc6 345 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 2 338 16.666 T 21-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAF_RS03390 f93e5a53b06fbee070b002fc72bf3fc6 345 SUPERFAMILY SSF55120 2 228 5.76E-71 T 21-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RAF_RS05380 1475c0418e2ac9cd3f5b0558ec10669f 266 Pfam PF04991 LicD family 71 121 1.1E-17 T 21-04-2016 IPR007074 LicD family RAF_RS05380 1475c0418e2ac9cd3f5b0558ec10669f 266 PANTHER PTHR13627 51 199 3.0E-22 T 21-04-2016 RAF_RS06200 e3877443429d6a7c313d9166c781a5ba 205 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 15 163 3.2E-34 T 21-04-2016 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 RAF_RS06200 e3877443429d6a7c313d9166c781a5ba 205 PANTHER PTHR33269:SF4 3 194 4.7E-49 T 21-04-2016 RAF_RS06200 e3877443429d6a7c313d9166c781a5ba 205 PANTHER PTHR33269 3 194 4.7E-49 T 21-04-2016 RAF_RS04725 5a8e2760eaaaa1b8b037675b7c23bb46 56 SUPERFAMILY SSF55729 1 56 9.53E-11 T 21-04-2016 IPR016181 Acyl-CoA N-acyltransferase RAF_RS04725 5a8e2760eaaaa1b8b037675b7c23bb46 56 Gene3D G3DSA:3.40.630.30 1 56 7.1E-13 T 21-04-2016 IPR016181 Acyl-CoA N-acyltransferase RAF_RS00295 5712c2c3e31ebf9f9aceaa33687d031c 91 ProDom PD512899 RC0057 1 91 1.0E-46 T 21-04-2016 RAF_RS01590 020614680052421716791ed6bd0da0ba 132 Pfam PF10691 Protein of unknown function (DUF2497) 54 128 4.7E-22 T 21-04-2016 IPR019632 Protein of unknown function DUF2497 RAF_RS01075 465efb5654c13fb52163438c3145c02f 353 Gene3D G3DSA:3.40.50.1820 45 168 1.7E-11 T 21-04-2016 IPR029058 Alpha/Beta hydrolase fold RAF_RS01075 465efb5654c13fb52163438c3145c02f 353 SUPERFAMILY SSF53474 7 168 3.72E-12 T 21-04-2016 IPR029058 Alpha/Beta hydrolase fold RAF_RS02780 62d1679a71b10082d9e92c74404de766 282 PANTHER PTHR31632 1 267 3.4E-18 T 21-04-2016 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0006827|GO:0016020|GO:0033573 RAF_RS02780 62d1679a71b10082d9e92c74404de766 282 Pfam PF03239 Iron permease FTR1 family 1 271 9.8E-56 T 21-04-2016 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0006827|GO:0016020|GO:0033573 RAF_RS06605 2bae3588052be31ada7ecc6af69fbb66 276 Gene3D G3DSA:3.40.50.1820 136 265 4.6E-13 T 21-04-2016 IPR029058 Alpha/Beta hydrolase fold RAF_RS06605 2bae3588052be31ada7ecc6af69fbb66 276 SUPERFAMILY SSF53474 55 259 5.78E-15 T 21-04-2016 IPR029058 Alpha/Beta hydrolase fold RAF_RS03085 d5885059b71b13eda56cce2b9897b0d5 129 SUPERFAMILY SSF88723 1 121 2.19E-16 T 21-04-2016 IPR029060 PIN domain-like RAF_RS03085 d5885059b71b13eda56cce2b9897b0d5 129 Pfam PF01850 PIN domain 4 121 3.6E-6 T 21-04-2016 IPR002716 PIN domain RAF_RS03085 d5885059b71b13eda56cce2b9897b0d5 129 Gene3D G3DSA:3.40.50.1010 1 122 1.2E-6 T 21-04-2016 IPR029060 PIN domain-like RAF_RS01625 c3d512eb2bf90887cd775a57e05c5c57 220 Pfam PF10858 Protein of unknown function (DUF2659) 1 220 1.5E-107 T 21-04-2016 IPR022588 Protein of unknown function DUF2659 RAF_RS01625 c3d512eb2bf90887cd775a57e05c5c57 220 ProDom PD209044 TRANSMEMBRANE RP231 MEMBRANE 1 220 2.0E-97 T 21-04-2016 IPR022588 Protein of unknown function DUF2659 RAF_RS02850 e95158ed900272dfe3da32ca7c7c865d 127 Gene3D G3DSA:2.160.10.10 85 126 3.2E-5 T 21-04-2016 RAF_RS02850 e95158ed900272dfe3da32ca7c7c865d 127 SUPERFAMILY SSF51161 31 124 3.06E-5 T 21-04-2016 IPR011004 Trimeric LpxA-like RAF_RS01095 673547a61a54a6045b6f3374b9c83a51 246 PIRSF PIRSF015601 2 238 4.4E-67 T 21-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RAF_RS01095 673547a61a54a6045b6f3374b9c83a51 246 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 3 234 7.4E-47 T 21-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RAF_RS01095 673547a61a54a6045b6f3374b9c83a51 246 PANTHER PTHR30027 1 242 3.1E-54 T 21-04-2016 RAF_RS01095 673547a61a54a6045b6f3374b9c83a51 246 PANTHER PTHR30027:SF3 1 242 3.1E-54 T 21-04-2016 RAF_RS01095 673547a61a54a6045b6f3374b9c83a51 246 SUPERFAMILY SSF88697 3 71 8.2E-14 T 21-04-2016 IPR015947 PUA-like domain RAF_RS01095 673547a61a54a6045b6f3374b9c83a51 246 SUPERFAMILY SSF75217 77 235 4.5E-38 T 21-04-2016 IPR029028 Alpha/beta knot methyltransferases RAF_RS01095 673547a61a54a6045b6f3374b9c83a51 246 Pfam PF04452 RNA methyltransferase 22 233 1.5E-54 T 21-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 RAF_RS01095 673547a61a54a6045b6f3374b9c83a51 246 Gene3D G3DSA:3.40.1280.10 1 236 1.4E-66 T 21-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RAF_RS03410 e539aba0ce6ef81e01b752027fc238bb 275 PANTHER PTHR30213 1 275 4.0E-47 T 21-04-2016 RAF_RS03410 e539aba0ce6ef81e01b752027fc238bb 275 Pfam PF03631 Virulence factor BrkB 17 270 4.5E-59 T 21-04-2016 IPR017039 Virulence factor BrkB RAF_RS03410 e539aba0ce6ef81e01b752027fc238bb 275 PIRSF PIRSF035875 1 275 1.1E-73 T 21-04-2016 IPR017039 Virulence factor BrkB RAF_RS03410 e539aba0ce6ef81e01b752027fc238bb 275 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 16 270 1.3E-29 T 21-04-2016 IPR017039 Virulence factor BrkB RAF_RS04290 b1ffdcd2cfc28f94f51a894cdd709233 121 Gene3D G3DSA:3.40.50.2020 7 90 2.9E-13 T 21-04-2016 IPR029057 Phosphoribosyltransferase-like RAF_RS04290 b1ffdcd2cfc28f94f51a894cdd709233 121 SUPERFAMILY SSF53271 2 92 1.05E-15 T 21-04-2016 IPR029057 Phosphoribosyltransferase-like RAF_RS01710 2452415fc1abb7cf5fee55095f67e702 67 ProDom PD195659 RP244 1 55 8.0E-25 T 21-04-2016 RAF_RS03920 4ae30f43895ce0fdb4e16521e51f07ad 263 PANTHER PTHR16255 18 252 2.0E-62 T 21-04-2016 RAF_RS03920 4ae30f43895ce0fdb4e16521e51f07ad 263 Pfam PF02582 Uncharacterised ACR, YagE family COG1723 37 209 6.1E-43 T 21-04-2016 IPR003734 Domain of unknown function DUF155 RAF_RS03835 529377aa0029bbdd1828dca85350a5a6 334 Gene3D G3DSA:1.25.40.10 156 276 2.7E-7 T 21-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RAF_RS03835 529377aa0029bbdd1828dca85350a5a6 334 Pfam PF07219 HemY protein N-terminus 27 116 1.5E-9 T 21-04-2016 IPR010817 HemY, N-terminal UniPathway: UPA00252 RAF_RS01845 5ea18dcf135b744684133fa7acd216fa 215 Pfam PF03379 CcmB protein 6 197 9.5E-8 T 21-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 RAF_RS02440 939eebc2d90233c4b9b090b406e14699 876 Pfam PF13502 AsmA-like C-terminal region 625 850 2.1E-19 T 21-04-2016 IPR032712 AsmA-like, C-terminal RAF_RS04110 d6f659d9ea6020bc9e0db18daf4af599 67 Pfam PF03222 Tryptophan/tyrosine permease family 12 63 3.7E-5 T 21-04-2016 IPR018227 Tryptophan/tyrosine permease GO:0003333 RAF_RS00020 fd1c66123650b8a4fde4b952257b6157 258 Pfam PF01061 ABC-2 type transporter 14 216 3.0E-10 T 21-04-2016 IPR013525 ABC-2 type transporter GO:0016020 RAF_RS00020 fd1c66123650b8a4fde4b952257b6157 258 PANTHER PTHR30413 9 258 6.8E-16 T 21-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 RAF_RS01560 6546f4b00d63eb78870cf9ae0869b418 85 Pfam PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) 3 79 4.1E-14 T 21-04-2016 IPR016908 Uncharacterised conserved protein UCP029037 RAF_RS04375 20ec72f5847f84070d14b640b5925797 172 Gene3D G3DSA:1.25.40.20 86 154 4.0E-14 T 21-04-2016 IPR020683 Ankyrin repeat-containing domain RAF_RS04375 20ec72f5847f84070d14b640b5925797 172 SUPERFAMILY SSF48403 85 155 2.64E-15 T 21-04-2016 IPR020683 Ankyrin repeat-containing domain RAF_RS04375 20ec72f5847f84070d14b640b5925797 172 Pfam PF13857 Ankyrin repeats (many copies) 90 143 1.6E-7 T 21-04-2016 RAF_RS04375 20ec72f5847f84070d14b640b5925797 172 PANTHER PTHR24198 85 155 8.6E-13 T 21-04-2016 RAF_RS02195 4a8396b2b85278da71c57d16f188bbe1 438 PANTHER PTHR23508 1 432 1.7E-44 T 21-04-2016 RAF_RS02195 4a8396b2b85278da71c57d16f188bbe1 438 SUPERFAMILY SSF103473 15 431 2.49E-40 T 21-04-2016 IPR020846 Major facilitator superfamily domain RAF_RS02195 4a8396b2b85278da71c57d16f188bbe1 438 Gene3D G3DSA:1.20.1250.20 254 427 9.6E-4 T 21-04-2016 RAF_RS02195 4a8396b2b85278da71c57d16f188bbe1 438 Gene3D G3DSA:1.20.1250.20 17 218 2.0E-16 T 21-04-2016 RAF_RS02195 4a8396b2b85278da71c57d16f188bbe1 438 Pfam PF07690 Major Facilitator Superfamily 23 353 6.4E-19 T 21-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RAF_RS05520 32ddfff72d96a9e110235a50d0682e42 117 SUPERFAMILY SSF48452 13 117 6.17E-7 T 21-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RAF_RS05520 32ddfff72d96a9e110235a50d0682e42 117 Gene3D G3DSA:1.25.40.10 12 116 6.8E-5 T 21-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 RAF_RS04295 47c14bd3a9c09f146cfa0f3458ef616b 115 Gene3D G3DSA:3.40.50.2020 47 113 1.5E-4 T 21-04-2016 IPR029057 Phosphoribosyltransferase-like RAF_RS04295 47c14bd3a9c09f146cfa0f3458ef616b 115 SUPERFAMILY SSF53271 42 113 4.49E-6 T 21-04-2016 IPR029057 Phosphoribosyltransferase-like RAF_RS00750 5653ea58db0b8c124b67f6518fd3a973 966 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 605 803 8.8E-20 T 21-04-2016 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 RAF_RS07070 0f79c457aa65a92945495dc6325d15f1 75 Pfam PF11019 Protein of unknown function (DUF2608) 6 60 7.4E-5 T 21-04-2016 IPR022565 Protein of unknown function DUF2608 RAF_RS06505 b9683b3ff10878effdb1380a72278e88 103 PANTHER PTHR30471:SF3 13 87 3.0E-14 T 21-04-2016 RAF_RS06505 b9683b3ff10878effdb1380a72278e88 103 PANTHER PTHR30471 13 87 3.0E-14 T 21-04-2016 RAF_RS00225 f1d8f6933e7f6617eb26c5bf526b4871 89 ProDom PD511875 RC0041 7 89 1.0E-39 T 21-04-2016 RAF_RS03970 a16905d1dee33498148bf76e34d5498a 161 Pfam PF10811 Protein of unknown function (DUF2532) 4 160 1.6E-79 T 21-04-2016 IPR024386 Protein of unknown function DUF2532 RAF_RS03970 a16905d1dee33498148bf76e34d5498a 161 ProDom PD206029 RP458 4 161 5.0E-86 T 21-04-2016 IPR024386 Protein of unknown function DUF2532 RAF_RS04030 a69106c99059f00d5f69f35d62bfc35f 95 SUPERFAMILY SSF55729 5 89 5.4E-9 T 21-04-2016 IPR016181 Acyl-CoA N-acyltransferase RAF_RS04030 a69106c99059f00d5f69f35d62bfc35f 95 Gene3D G3DSA:3.40.630.30 7 87 1.2E-8 T 21-04-2016 IPR016181 Acyl-CoA N-acyltransferase RAF_RS00160 9afe8ce816562541f1e78b129964fa47 87 Pfam PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter 34 77 7.4E-11 T 21-04-2016 IPR032820 Putative F0F1-ATPase subunit, Ca2+/Mg2+ transporter RAF_RS01850 130a64496b82ea11d98aff5853b93f55 152 Pfam PF10875 Protein of unknown function (DUF2670) 1 139 1.7E-81 T 21-04-2016 IPR022714 Protein of unknown function DUF2670 RAF_RS01850 130a64496b82ea11d98aff5853b93f55 152 ProDom PD203944 RP269 1 136 1.0E-75 T 21-04-2016 IPR022714 Protein of unknown function DUF2670 RAF_RS03110 26c7c4efdbbbe04936acf90b407831fc 211 SUPERFAMILY SSF54427 86 209 5.7E-11 T 21-04-2016 IPR032710 NTF2-like domain RAF_RS03110 26c7c4efdbbbe04936acf90b407831fc 211 SMART SM00978 84 210 1.2E-10 T 21-04-2016 IPR007379 Tim44-like domain RAF_RS03110 26c7c4efdbbbe04936acf90b407831fc 211 ProDom PD111165 RP434 1 211 2.0E-118 T 21-04-2016 RAF_RS03830 46afb19a1fa4dc51f04272138c4b0999 251 TIGRFAM TIGR03774 RPE2: rickettsial palindromic element RPE2 domain 100 135 1.2E-19 T 21-04-2016 IPR022436 Rickettsia palindromic element RPE2 RAF_RS06850 117221264b04fe124d337751a561f8f6 360 PANTHER PTHR33529 1 359 5.5E-29 T 21-04-2016 RAF_RS06850 117221264b04fe124d337751a561f8f6 360 PANTHER PTHR33529:SF2 1 359 5.5E-29 T 21-04-2016 RAF_RS06850 117221264b04fe124d337751a561f8f6 360 Pfam PF03739 Predicted permease YjgP/YjgQ family 6 357 1.4E-49 T 21-04-2016 IPR005495 Permease LptG/LptF-related GO:0016021 RAF_RS01690 2979b25c9921ee2da2958f6328dcc3e1 107 Pfam PF11020 Domain of unknown function (DUF2610) 4 84 6.9E-37 T 21-04-2016 IPR021277 Protein of unknown function DUF2610 RAF_RS07095 7a0e0edf8abb9e9eaf457711756cfffb 85 TIGRFAM TIGR03776 RPE5: rickettsial palindromic element RPE5 domain 39 77 7.2E-11 T 21-04-2016 IPR022438 Rickettsia palindromic element RPE5 RAF_RS07095 7a0e0edf8abb9e9eaf457711756cfffb 85 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 5 39 1.2E-14 T 21-04-2016 IPR005728 Rickettsial palindromic element RAF_RS02785 89e462189a03a78414a4f2f91fe5fae3 126 Pfam PF13473 Cupredoxin-like domain 16 124 2.0E-29 T 21-04-2016 IPR028096 EfeO-type cupredoxin-like domain RAF_RS02785 89e462189a03a78414a4f2f91fe5fae3 126 Gene3D G3DSA:2.60.40.420 10 109 9.8E-9 T 21-04-2016 IPR008972 Cupredoxin RAF_RS02785 89e462189a03a78414a4f2f91fe5fae3 126 SUPERFAMILY SSF49503 37 125 2.13E-14 T 21-04-2016 IPR008972 Cupredoxin RAF_RS06320 201a56edde8e78f8fb6f874ade360f72 71 Pfam PF05168 HEPN domain 17 60 2.2E-5 T 21-04-2016 IPR007842 HEPN domain RAF_RS06320 201a56edde8e78f8fb6f874ade360f72 71 Gene3D G3DSA:1.20.120.330 15 63 5.1E-4 T 21-04-2016 RAF_RS02960 c0f0afffcfca26c37cbd8eb4a61d3426 61 SUPERFAMILY SSF56954 3 60 4.97E-5 T 21-04-2016 RAF_RS02960 c0f0afffcfca26c37cbd8eb4a61d3426 61 Gene3D G3DSA:1.20.1600.10 3 60 1.2E-4 T 21-04-2016 RAF_RS02875 6cb75642dbc497b62084ea223b68f85b 82 Pfam PF11233 Protein of unknown function (DUF3035) 14 64 6.1E-8 T 21-04-2016 IPR021395 Protein of unknown function DUF3035 RAF_RS03335 9e57213d48f5378898712017fa4acd8f 960 SUPERFAMILY SSF141571 640 677 6.67E-5 T 21-04-2016 RAF_RS03335 9e57213d48f5378898712017fa4acd8f 960 Pfam PF00805 Pentapeptide repeats (8 copies) 640 672 0.0011 T 21-04-2016 IPR001646 Pentapeptide repeat RAF_RS01995 6b320aa3d2fe73341dac5f65bf880974 111 PANTHER PTHR34583:SF2 1 107 2.2E-28 T 21-04-2016 RAF_RS01995 6b320aa3d2fe73341dac5f65bf880974 111 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 5 107 2.6E-22 T 21-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 RAF_RS01995 6b320aa3d2fe73341dac5f65bf880974 111 PANTHER PTHR34583 1 107 2.2E-28 T 21-04-2016 RAF_RS03030 0f4110082c320a0edc0a298625e353ed 101 Pfam PF04977 Septum formation initiator 21 99 1.4E-19 T 21-04-2016 IPR007060 Septum formation initiator FtsL/DivIC GO:0007049 RAF_RS05480 04175759c7c83258be1623add391c0b1 82 Pfam PF10880 Protein of unknown function (DUF2673) 1 82 3.3E-50 T 21-04-2016 IPR024247 Protein of unknown function DUF2673 RAF_RS05480 04175759c7c83258be1623add391c0b1 82 ProDom PD196938 PRECURSOR SIGNAL RP697 1 82 2.0E-40 T 21-04-2016 IPR024247 Protein of unknown function DUF2673 RAF_RS01025 5d26edf383e6d98c2a9f150bb160cefa 107 Pfam PF01899 Na+/H+ ion antiporter subunit 8 93 3.5E-19 T 21-04-2016 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 RAF_RS02025 a873dccbafbd0a355fa2a52be412e391 482 Pfam PF03743 Bacterial conjugation TrbI-like protein 193 356 5.7E-32 T 21-04-2016 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI RAF_RS05965 706e5a2393e8d9db3e991a8460392357 115 TIGRFAM TIGR01045 RPE1: rickettsial palindromic element RPE1 domain 9 50 3.0E-21 T 21-04-2016 IPR005728 Rickettsial palindromic element RAF_RS06785 7c1f6fda98f89daeb3039faaafd66924 132 PANTHER PTHR10160 48 131 8.2E-34 T 21-04-2016 RAF_RS06785 7c1f6fda98f89daeb3039faaafd66924 132 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 48 131 6.1E-35 T 21-04-2016 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2 RAF_RS06030 64763bda4be0185a8ece51b7939cead7 356 Gene3D G3DSA:1.20.1180.10 147 210 6.5E-4 T 21-04-2016 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 RAF_RS00370 f4d84339d7c3b125afa0e06ac3402fa0 117 Pfam PF07007 Protein of unknown function (DUF1311) 2 82 2.5E-16 T 21-04-2016 IPR009739 Protein of unknown function DUF1311 RAF_RS00370 f4d84339d7c3b125afa0e06ac3402fa0 117 PANTHER PTHR39176 1 104 3.3E-14 T 21-04-2016 RAF_RS00370 f4d84339d7c3b125afa0e06ac3402fa0 117 ProDom PD498860 RC0070 78 117 1.0E-16 T 21-04-2016 RAF_RS04585 85a63a452d803c5ba06086f5735047fd 250 Pfam PF05857 TraX protein 13 242 9.1E-50 T 21-04-2016 IPR008875 TraX RAF_RS01035 d7ac210098498efa90209fb7cdaf3dd7 67 ProDom PD195599 RP158 1 67 3.0E-32 T 21-04-2016 IPR024246 Protein of unknown function DUF2674 RAF_RS01035 d7ac210098498efa90209fb7cdaf3dd7 67 Pfam PF10879 Protein of unknown function (DUF2674) 1 67 1.1E-43 T 21-04-2016 IPR024246 Protein of unknown function DUF2674 RAF_RS03510 54d86cf65af6bf6982ccaeab8906a0ef 94 Pfam PF09931 Uncharacterized conserved protein (DUF2163) 10 71 1.6E-5 T 21-04-2016 IPR019228 Bacteriophage phiJL001, Gp84, N-terminal RAF_RS06885 8e9458e8f6e7295d615c658617428ef0 117 SUPERFAMILY SSF53335 2 112 9.41E-10 T 21-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RAF_RS03820 3f7d13cce44e3b0c31ac7c0a1bfb080d 213 PANTHER PTHR30086:SF0 5 210 2.3E-59 T 21-04-2016 RAF_RS03820 3f7d13cce44e3b0c31ac7c0a1bfb080d 213 PANTHER PTHR30086 5 210 2.3E-59 T 21-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RAF_RS03820 3f7d13cce44e3b0c31ac7c0a1bfb080d 213 Pfam PF01810 LysE type translocator 17 202 2.5E-22 T 21-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 RAF_RS02935 b9ebce246af320d4e7c412d3ac7d92e0 43 SUPERFAMILY SSF82693 1 36 7.85E-5 T 21-04-2016 RAF_RS02935 b9ebce246af320d4e7c412d3ac7d92e0 43 Gene3D G3DSA:3.30.70.1430 1 35 1.7E-6 T 21-04-2016 RAF_RS00540 e4698148ba472b0383d76558bf8f5055 186 Pfam PF06242 Protein of unknown function (DUF1013) 39 175 6.8E-61 T 21-04-2016 IPR010421 Protein of unknown function DUF1013 RAF_RS02530 9012be6ed5e8935065dbd79c78d3e98a 387 ProDom PD210175 RP364 RP363 75 219 3.0E-67 T 21-04-2016 IPR020168 Uncharacterised protein family RP364 RAF_RS01135 209ddbaa3387f7485fc7cf857288aadb 88 Gene3D G3DSA:3.40.50.1820 6 72 5.0E-11 T 21-04-2016 IPR029058 Alpha/Beta hydrolase fold RAF_RS06875 11edb2a44c2cf73145a3876fdbc7f7bd 65 SUPERFAMILY SSF116734 1 64 7.19E-12 T 21-04-2016 RAF_RS07080 e72fbf71970d73cf6a0148a318abe37f 33 Gene3D G3DSA:1.20.1600.10 2 33 6.7E-5 T 21-04-2016 RAF_RS04140 7e00f1cd53fcca26ba8bcabc053da64e 104 ProDom PD199129 RP547 1 104 8.0E-54 T 21-04-2016 RAF_RS06775 8504288332c7dca8a4846a4b27fe2030 204 PANTHER PTHR13205 1 191 9.5E-15 T 21-04-2016 IPR032974 Polyprenol kinase family RAF_RS03675 e7d951ea65a1598e227375a374c441b4 71 Gene3D G3DSA:3.40.630.30 7 70 4.9E-4 T 21-04-2016 IPR016181 Acyl-CoA N-acyltransferase RAF_RS00090 6fe9f4c32b0651606b29fd27293c5c32 68 ProDom PD505916 COMEC/REC2-RELATED RC0016 1 68 2.0E-34 T 21-04-2016 RAF_RS02980 8b618723ee7f805a7417d6320154c3e4 64 Pfam PF12784 PD-(D/E)XK nuclease family transposase 9 54 9.0E-13 T 21-04-2016 RAF_RS03630 46deafaa758d8eed8d6061c99468e447 568 Pfam PF11638 DnaA N-terminal domain 491 554 2.3E-6 T 21-04-2016 IPR024633 DnaA N-terminal domain RAF_RS03855 cb4592a44ded43c2748e8b264bde85fc 146 Pfam PF10116 Protein required for attachment to host cells 9 142 5.9E-25 T 21-04-2016 IPR019291 Host attachment protein RAF_RS04590 62303da1a87e9fc578e0b749514a6168 200 ProDom PD209215 WITH SIMILARITIES RP592 1 200 3.0E-114 T 21-04-2016 RAF_RS04700 c8d9d76d8aa6bdd8c2a6af0db971e58f 101 SUPERFAMILY SSF103473 5 99 5.75E-7 T 21-04-2016 IPR020846 Major facilitator superfamily domain RAF_RS04700 c8d9d76d8aa6bdd8c2a6af0db971e58f 101 Gene3D G3DSA:1.20.1250.20 40 99 1.2E-4 T 21-04-2016 RAF_RS05445 bb6c75d0dfb5f6c4aa35105df14244ce 102 Pfam PF10027 Predicted integral membrane protein (DUF2269) 1 101 1.6E-26 T 21-04-2016 IPR018729 Protein of unknown function DUF2269, transmembrane RAF_RS05885 905267ca0197801a560b15c2a889e3b1 78 Pfam PF12784 PD-(D/E)XK nuclease family transposase 6 72 1.3E-20 T 21-04-2016 RAF_RS05775 19078b9d24d6beea3da681fb7fa3d92e 49 Pfam PF09752 Uncharacterized conserved protein (DUF2048) 2 45 2.0E-5 T 21-04-2016 IPR019149 Abhydrolase domain containing 18 RAF_RS05600 22a9cf6b1dc2e96cf6c4aee3431c8db2 99 SUPERFAMILY SSF109604 19 95 4.39E-14 T 21-04-2016 RAF_RS04150 13463f78f85b67f2939de173fe8d7cee 78 Gene3D G3DSA:1.10.1220.10 1 41 9.7E-6 T 21-04-2016 IPR013321 Arc-type ribbon-helix-helix GO:0006355 RAF_RS00035 37d85a3f71a880736608194ea04749ca 84 SUPERFAMILY SSF47598 5 45 2.78E-6 T 21-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 RAF_RS00240 74be59cba53649f9d155ce467f919c85 222 Pfam PF02674 Colicin V production protein 5 130 1.3E-15 T 21-04-2016 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 RAF_RS03370 e882bb1488dc472a3ae001e4f3923852 198 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 77 194 5.5E-8 T 21-04-2016 IPR010664 Lipopolysaccharide assembly, LptC-related RAF_RS02495 6fdda30f30a70fe8d6531d2cc1f69214 411 Pfam PF04932 O-Antigen ligase 198 344 2.3E-17 T 21-04-2016 IPR007016 O-antigen ligase-related RAF_RS06740 67b7dfb816da55651a0ebbf8245d7589 316 ProDom PD214932 TRANSMEMBRANE MEMBRANE RP853 15 316 1.0E-167 T 21-04-2016 IPR020180 Uncharacterised protein family RP853 RAF_RS02020 568ef242efcea22092a2304a3cedda55 157 Pfam PF03524 Conjugal transfer protein 46 152 1.2E-30 T 21-04-2016 IPR010258 Conjugal transfer, TrbG/VirB9/CagX