##gff-version 3
#!gff-spec-version 1.21
#!processor NCBI annotwriter
#!genome-build ASM2300v1
#!genome-build-accession NCBI_Assembly:GCF_000023005.1
##sequence-region NC_012633.1 1 1278540
##species http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=347255
NC_012633.1	RefSeq	region	1	1278540	.	+	.	ID=id0;Dbxref=taxon:347255;Is_circular=true;Name=ANONYMOUS;country=Ethiopia;gbkey=Src;genome=chromosome;mol_type=genomic DNA;nat-host=Amblyomma variegatum (cattle tick);strain=ESF-5
NC_012633.1	RefSeq	gene	1	822	.	+	.	ID=gene0;Name=RAF_RS00005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00005;old_locus_tag=RAF_ORF0001
NC_012633.1	Protein Homology	CDS	1	822	.	+	0	ID=cds0;Parent=gene0;Dbxref=Genbank:WP_012719301.1;Name=WP_012719301.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719301.1;transl_table=11
NC_012633.1	RefSeq	gene	1040	1357	.	+	.	ID=gene1;Name=trxA;gbkey=Gene;gene=trxA;gene_biotype=protein_coding;locus_tag=RAF_RS00010;old_locus_tag=RAF_ORF0002
NC_012633.1	Protein Homology	CDS	1040	1357	.	+	0	ID=cds1;Parent=gene1;Dbxref=Genbank:WP_004997015.1;Name=WP_004997015.1;gbkey=CDS;gene=trxA;product=thioredoxin;protein_id=WP_004997015.1;transl_table=11
NC_012633.1	RefSeq	gene	1368	2117	.	+	.	ID=gene2;Name=RAF_RS00015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00015;old_locus_tag=RAF_ORF0003
NC_012633.1	Protein Homology	CDS	1368	2117	.	+	0	ID=cds2;Parent=gene2;Dbxref=Genbank:WP_012719302.1;Name=WP_012719302.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_012719302.1;transl_table=11
NC_012633.1	RefSeq	gene	2118	2894	.	+	.	ID=gene3;Name=RAF_RS00020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00020;old_locus_tag=RAF_ORF0004
NC_012633.1	Protein Homology	CDS	2118	2894	.	+	0	ID=cds3;Parent=gene3;Dbxref=Genbank:WP_004997009.1;Name=WP_004997009.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_004997009.1;transl_table=11
NC_012633.1	RefSeq	gene	2891	5992	.	+	.	ID=gene4;Name=RAF_RS00025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00025;old_locus_tag=RAF_ORF0005
NC_012633.1	Protein Homology	CDS	2891	5992	.	+	0	ID=cds4;Parent=gene4;Dbxref=Genbank:WP_012719303.1;Name=WP_012719303.1;Note=undetermined function;gbkey=CDS;product=bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase;protein_id=WP_012719303.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	3636	3693	.	-	.	ID=id1;Note=RAF_REPEAT001_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	4959	5026	.	+	.	ID=id2;Note=RAF_REPEAT002_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	6036	6275	.	-	.	ID=gene5;Name=RAF_RS00030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00030;old_locus_tag=RAF_ORF0006
NC_012633.1	Protein Homology	CDS	6036	6275	.	-	0	ID=cds5;Parent=gene5;Dbxref=Genbank:WP_041471780.1;Name=WP_041471780.1;gbkey=CDS;product=mRNA interferase PemK;protein_id=WP_041471780.1;transl_table=11
NC_012633.1	RefSeq	gene	6300	6554	.	-	.	ID=gene6;Name=RAF_RS00035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00035;old_locus_tag=RAF_ORF0007
NC_012633.1	Protein Homology	CDS	6300	6554	.	-	0	ID=cds6;Parent=gene6;Dbxref=Genbank:WP_041471987.1;Name=WP_041471987.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471987.1;transl_table=11
NC_012633.1	RefSeq	gene	6612	7406	.	-	.	ID=gene7;Name=RAF_RS00040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00040;old_locus_tag=RAF_ORF0008
NC_012633.1	Protein Homology	CDS	6612	7406	.	-	0	ID=cds7;Parent=gene7;Dbxref=Genbank:WP_004997001.1;Name=WP_004997001.1;gbkey=CDS;product=acyl-ACP-UDP-N-acetylglucosamine O-acyltransferase;protein_id=WP_004997001.1;transl_table=11
NC_012633.1	RefSeq	gene	7414	7851	.	-	.	ID=gene8;Name=RAF_RS00045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00045;old_locus_tag=RAF_ORF0009
NC_012633.1	Protein Homology	CDS	7414	7851	.	-	0	ID=cds8;Parent=gene8;Dbxref=Genbank:WP_012719306.1;Name=WP_012719306.1;gbkey=CDS;product=3-hydroxyacyl-ACP dehydratase;protein_id=WP_012719306.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	7885	7977	.	-	.	ID=id3;Note=RAF_REPEAT003_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	8047	9087	.	-	.	ID=gene9;Name=RAF_RS00050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00050;old_locus_tag=RAF_ORF0010
NC_012633.1	Protein Homology	CDS	8047	9087	.	-	0	ID=cds9;Parent=gene9;Dbxref=Genbank:WP_012719307.1;Name=WP_012719307.1;gbkey=CDS;product=UDP-3-O-acylglucosamine N-acyltransferase;protein_id=WP_012719307.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	9219	9293	.	+	.	ID=id4;Note=RAF_REPEAT004_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	9405	9554	.	+	.	ID=id5;Note=RAF_REPEAT005_RPE-8%2C RPE-8 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	9595	9670	.	-	.	ID=gene10;Name=RAF_RS00055;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS00055;old_locus_tag=RAF_RNA01
NC_012633.1	tRNAscan-SE	tRNA	9595	9670	.	-	.	ID=rna0;Parent=gene10;anticodon=(pos:complement(9635..9637));gbkey=tRNA;product=tRNA-Phe
NC_012633.1	tRNAscan-SE	exon	9595	9670	.	-	.	ID=id6;Parent=rna0;anticodon=(pos:complement(9635..9637));gbkey=tRNA;product=tRNA-Phe
NC_012633.1	RefSeq	repeat_region	9675	9798	.	-	.	ID=id7;Note=RAF_REPEAT006_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	9944	10939	.	+	.	ID=gene11;Name=RAF_RS00060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00060;old_locus_tag=RAF_ORF0011
NC_012633.1	Protein Homology	CDS	9944	10939	.	+	0	ID=cds10;Parent=gene11;Dbxref=Genbank:WP_041471988.1;Name=WP_041471988.1;gbkey=CDS;product=tRNA-dihydrouridine synthase;protein_id=WP_041471988.1;transl_table=11
NC_012633.1	RefSeq	gene	10957	11886	.	+	.	ID=gene12;Name=RAF_RS00065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00065
NC_012633.1	Protein Homology	CDS	10957	11886	.	+	0	ID=cds11;Parent=gene12;Dbxref=Genbank:WP_041471781.1;Name=WP_041471781.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471781.1;transl_table=11
NC_012633.1	RefSeq	gene	11945	12127	.	+	.	ID=gene13;Name=RAF_RS00070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00070
NC_012633.1	Protein Homology	CDS	11945	12127	.	+	0	ID=cds12;Parent=gene13;Dbxref=Genbank:WP_041471782.1;Name=WP_041471782.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471782.1;transl_table=11
NC_012633.1	RefSeq	gene	12135	12662	.	-	.	ID=gene14;Name=RAF_RS00075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00075;old_locus_tag=RAF_ORF0013
NC_012633.1	Protein Homology	CDS	12135	12662	.	-	0	ID=cds13;Parent=gene14;Dbxref=Genbank:WP_004996990.1;Name=WP_004996990.1;gbkey=CDS;product=tRNA threonylcarbamoyladenosine biosynthesis protein TsaE;protein_id=WP_004996990.1;transl_table=11
NC_012633.1	RefSeq	gene	12650	13603	.	-	.	ID=gene15;Name=RAF_RS00080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00080;old_locus_tag=RAF_ORF0014
NC_012633.1	Protein Homology	CDS	12650	13603	.	-	0	ID=cds14;Parent=gene15;Dbxref=Genbank:WP_012719310.1;Name=WP_012719310.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719310.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	13515	13581	.	+	.	ID=id8;Note=RAF_REPEAT007_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	13600	14910	.	-	.	ID=gene16;Name=RAF_RS00085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00085;old_locus_tag=RAF_ORF0015
NC_012633.1	Protein Homology	CDS	13600	14910	.	-	0	ID=cds15;Parent=gene16;Dbxref=Genbank:WP_012719311.1;Name=WP_012719311.1;gbkey=CDS;product=poly(A) polymerase;protein_id=WP_012719311.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	14648	14791	.	-	.	ID=id9;Note=RAF_REPEAT008_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	15065	15158	.	+	.	ID=id10;Note=RAF_REPEAT009_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	15399	15605	.	-	.	ID=gene17;Name=RAF_RS00090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00090
NC_012633.1	Protein Homology	CDS	15399	15605	.	-	0	ID=cds16;Parent=gene17;Dbxref=Genbank:WP_041471783.1;Name=WP_041471783.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471783.1;transl_table=11
NC_012633.1	RefSeq	gene	15708	16435	.	-	.	ID=gene18;Name=RAF_RS00095;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS00095;pseudo=true
NC_012633.1	Protein Homology	CDS	15708	16435	.	-	0	ID=cds17;Parent=gene18;exception=annotated by transcript or proteomic data;gbkey=CDS;product=DNA translocation competence protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	16456	16704	.	-	.	ID=gene19;Name=RAF_RS00100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00100;old_locus_tag=RAF_ORF0018
NC_012633.1	Protein Homology	CDS	16456	16704	.	-	0	ID=cds18;Parent=gene19;Dbxref=Genbank:WP_012719312.1;Name=WP_012719312.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719312.1;transl_table=11
NC_012633.1	RefSeq	gene	16818	16958	.	-	.	ID=gene20;Name=RAF_RS00105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00105
NC_012633.1	Protein Homology	CDS	16818	16958	.	-	0	ID=cds19;Parent=gene20;Dbxref=Genbank:WP_041471784.1;Name=WP_041471784.1;gbkey=CDS;product=competence protein ComEC;protein_id=WP_041471784.1;transl_table=11
NC_012633.1	RefSeq	gene	17347	22914	.	+	.	ID=gene21;Name=RAF_RS00110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00110;old_locus_tag=RAF_ORF0019
NC_012633.1	Protein Homology	CDS	17347	22914	.	+	0	ID=cds20;Parent=gene21;Dbxref=Genbank:WP_012719313.1;Name=WP_012719313.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719313.1;transl_table=11
NC_012633.1	RefSeq	gene	23024	23098	.	+	.	ID=gene22;Name=RAF_RS00115;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS00115;old_locus_tag=RAF_RNA02
NC_012633.1	tRNAscan-SE	tRNA	23024	23098	.	+	.	ID=rna1;Parent=gene22;anticodon=(pos:23057..23059);gbkey=tRNA;product=tRNA-Glu
NC_012633.1	tRNAscan-SE	exon	23024	23098	.	+	.	ID=id11;Parent=rna1;anticodon=(pos:23057..23059);gbkey=tRNA;product=tRNA-Glu
NC_012633.1	RefSeq	gene	23387	23652	.	+	.	ID=gene23;Name=RAF_RS00120;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS00120;old_locus_tag=RAF_ORF0020;pseudo=true
NC_012633.1	Protein Homology	CDS	23387	23652	.	+	0	ID=cds21;Parent=gene23;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	24260	24886	.	+	.	ID=gene24;Name=RAF_RS00125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00125;old_locus_tag=RAF_ORF0021
NC_012633.1	Protein Homology	CDS	24260	24886	.	+	0	ID=cds22;Parent=gene24;Dbxref=Genbank:WP_010976709.1;Name=WP_010976709.1;gbkey=CDS;product=NTPase;protein_id=WP_010976709.1;transl_table=11
NC_012633.1	RefSeq	gene	25343	25546	.	+	.	ID=gene25;Name=RAF_RS00130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00130
NC_012633.1	Protein Homology	CDS	25343	25546	.	+	0	ID=cds23;Parent=gene25;Dbxref=Genbank:WP_041471785.1;Name=WP_041471785.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471785.1;transl_table=11
NC_012633.1	RefSeq	gene	25889	26092	.	+	.	ID=gene26;Name=RAF_RS00135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00135
NC_012633.1	Protein Homology	CDS	25889	26092	.	+	0	ID=cds24;Parent=gene26;Dbxref=Genbank:WP_041471786.1;Name=WP_041471786.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471786.1;transl_table=11
NC_012633.1	RefSeq	gene	26098	26592	.	-	.	ID=gene27;Name=RAF_RS00140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00140;old_locus_tag=RAF_ORF0022
NC_012633.1	Protein Homology	CDS	26098	26592	.	-	0	ID=cds25;Parent=gene27;Dbxref=Genbank:WP_010976712.1;Name=WP_010976712.1;Note=Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.;gbkey=CDS;product=ATP synthase subunit b;protein_id=WP_010976712.1;transl_table=11
NC_012633.1	RefSeq	gene	26592	27065	.	-	.	ID=gene28;Name=RAF_RS00145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00145;old_locus_tag=RAF_ORF0023
NC_012633.1	Protein Homology	CDS	26592	27065	.	-	0	ID=cds26;Parent=gene28;Dbxref=Genbank:WP_004996956.1;Name=WP_004996956.1;Note=Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B' is part of the membrane proton channel.;gbkey=CDS;product=F0F1 ATP synthase subunit B';protein_id=WP_004996956.1;transl_table=11
NC_012633.1	RefSeq	gene	27084	27308	.	-	.	ID=gene29;Name=RAF_RS00150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00150;old_locus_tag=RAF_ORF0024
NC_012633.1	Protein Homology	CDS	27084	27308	.	-	0	ID=cds27;Parent=gene29;Dbxref=Genbank:WP_004996954.1;Name=WP_004996954.1;gbkey=CDS;product=ATP synthase subunit c;protein_id=WP_004996954.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	27362	27505	.	+	.	ID=id12;Note=RAF_REPEAT010_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	27504	28232	.	-	.	ID=gene30;Name=RAF_RS00155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00155;old_locus_tag=RAF_ORF0025
NC_012633.1	Protein Homology	CDS	27504	28232	.	-	0	ID=cds28;Parent=gene30;Dbxref=Genbank:WP_012719315.1;Name=WP_012719315.1;gbkey=CDS;product=ATP synthase subunit a;protein_id=WP_012719315.1;transl_table=11
NC_012633.1	RefSeq	gene	28237	28500	.	-	.	ID=gene31;Name=RAF_RS00160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00160;old_locus_tag=RAF_ORF0026
NC_012633.1	Protein Homology	CDS	28237	28500	.	-	0	ID=cds29;Parent=gene31;Dbxref=Genbank:WP_012719316.1;Name=WP_012719316.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719316.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	28513	28578	.	-	.	ID=id13;Note=RAF_REPEAT011_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	28611	29444	.	-	.	ID=gene32;Name=RAF_RS00165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00165;old_locus_tag=RAF_ORF0027
NC_012633.1	Protein Homology	CDS	28611	29444	.	-	0	ID=cds30;Parent=gene32;Dbxref=Genbank:WP_012719317.1;Name=WP_012719317.1;gbkey=CDS;product=protein disulfide oxidoreductase;protein_id=WP_012719317.1;transl_table=11
NC_012633.1	RefSeq	gene	29608	30129	.	+	.	ID=gene33;Name=RAF_RS00170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00170;old_locus_tag=RAF_ORF0028
NC_012633.1	Protein Homology	CDS	29608	30129	.	+	0	ID=cds31;Parent=gene33;Dbxref=Genbank:WP_012719318.1;Name=WP_012719318.1;gbkey=CDS;product=CarD family transcriptional regulator;protein_id=WP_012719318.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	30132	30259	.	-	.	ID=id14;Note=RAF_REPEAT012_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	30376	31980	.	-	.	ID=gene34;Name=RAF_RS00175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00175;old_locus_tag=RAF_ORF0029
NC_012633.1	Protein Homology	CDS	30376	31980	.	-	0	ID=cds32;Parent=gene34;Dbxref=Genbank:WP_004996937.1;Name=WP_004996937.1;gbkey=CDS;product=F0F1 ATP synthase subunit A;protein_id=WP_004996937.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	32276	32394	.	+	.	ID=id15;Note=RAF_REPEAT013_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	32406	33488	.	-	.	ID=gene35;Name=RAF_RS00180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00180;old_locus_tag=RAF_ORF0030
NC_012633.1	Protein Homology	CDS	32406	33488	.	-	0	ID=cds33;Parent=gene35;Dbxref=Genbank:WP_012719319.1;Name=WP_012719319.1;gbkey=CDS;product=DNA recombination protein RecF;protein_id=WP_012719319.1;transl_table=11
NC_012633.1	RefSeq	gene	34147	34641	.	-	.	ID=gene36;Name=RAF_RS00185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00185;old_locus_tag=RAF_ORF0031
NC_012633.1	Protein Homology	CDS	34147	34641	.	-	0	ID=cds34;Parent=gene36;Dbxref=Genbank:WP_004996932.1;Name=WP_004996932.1;gbkey=CDS;product=diadenosine tetraphosphatase;protein_id=WP_004996932.1;transl_table=11
NC_012633.1	RefSeq	gene	34638	34898	.	-	.	ID=gene37;Name=RAF_RS00190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00190
NC_012633.1	Protein Homology	CDS	34638	34898	.	-	0	ID=cds35;Parent=gene37;Dbxref=Genbank:WP_004996927.1;Name=WP_004996927.1;gbkey=CDS;product=folate biosynthesis protein;protein_id=WP_004996927.1;transl_table=11
NC_012633.1	RefSeq	gene	34855	35124	.	-	.	ID=gene38;Name=RAF_RS00195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00195
NC_012633.1	Protein Homology	CDS	34855	35124	.	-	0	ID=cds36;Parent=gene38;Dbxref=Genbank:WP_004996924.1;Name=WP_004996924.1;gbkey=CDS;product=folate biosynthesis protein;protein_id=WP_004996924.1;transl_table=11
NC_012633.1	RefSeq	gene	35315	35737	.	-	.	ID=gene39;Name=RAF_RS00200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00200
NC_012633.1	Protein Homology	CDS	35315	35737	.	-	0	ID=cds37;Parent=gene39;Dbxref=Genbank:WP_041471787.1;Name=WP_041471787.1;gbkey=CDS;product=folate biosynthesis protein;protein_id=WP_041471787.1;transl_table=11
NC_012633.1	RefSeq	gene	35718	35936	.	-	.	ID=gene40;Name=RAF_RS00205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00205
NC_012633.1	Protein Homology	CDS	35718	35936	.	-	0	ID=cds38;Parent=gene40;Dbxref=Genbank:WP_014410280.1;Name=WP_014410280.1;gbkey=CDS;product=folate biosynthesis protein;protein_id=WP_014410280.1;transl_table=11
NC_012633.1	RefSeq	gene	36402	37070	.	-	.	ID=gene41;Name=RAF_RS00210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00210;old_locus_tag=RAF_ORF0035
NC_012633.1	Protein Homology	CDS	36402	37070	.	-	0	ID=cds39;Parent=gene41;Dbxref=Genbank:WP_012719320.1;Name=WP_012719320.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719320.1;transl_table=11
NC_012633.1	RefSeq	gene	37128	37451	.	-	.	ID=gene42;Name=RAF_RS00215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00215;old_locus_tag=RAF_ORF0036
NC_012633.1	Protein Homology	CDS	37128	37451	.	-	0	ID=cds40;Parent=gene42;Dbxref=Genbank:WP_012719321.1;Name=WP_012719321.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719321.1;transl_table=11
NC_012633.1	RefSeq	gene	37620	38039	.	-	.	ID=gene43;Name=RAF_RS00220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00220
NC_012633.1	Protein Homology	CDS	37620	38039	.	-	0	ID=cds41;Parent=gene43;Dbxref=Genbank:WP_041471788.1;Name=WP_041471788.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471788.1;transl_table=11
NC_012633.1	RefSeq	gene	38438	38707	.	-	.	ID=gene44;Name=RAF_RS00225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00225
NC_012633.1	Protein Homology	CDS	38438	38707	.	-	0	ID=cds42;Parent=gene44;Dbxref=Genbank:WP_041471789.1;Name=WP_041471789.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471789.1;transl_table=11
NC_012633.1	RefSeq	gene	39932	40528	.	+	.	ID=gene45;Name=RAF_RS00230;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS00230;pseudo=true
NC_012633.1	Protein Homology	CDS	39932	40528	.	+	0	ID=cds43;Parent=gene45;gbkey=CDS;product=photosynthetic protein synthase II;pseudo=true;transl_except=(pos:40361..40363%2Caa:Other);transl_table=11
NC_012633.1	RefSeq	gene	40539	41108	.	-	.	ID=gene46;Name=RAF_RS00235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00235;old_locus_tag=RAF_ORF0041
NC_012633.1	Protein Homology	CDS	40539	41108	.	-	0	ID=cds44;Parent=gene46;Dbxref=Genbank:WP_012719323.1;Name=WP_012719323.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719323.1;transl_table=11
NC_012633.1	RefSeq	gene	41174	41842	.	+	.	ID=gene47;Name=RAF_RS00240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00240;old_locus_tag=RAF_ORF0042
NC_012633.1	Protein Homology	CDS	41174	41842	.	+	0	ID=cds45;Parent=gene47;Dbxref=Genbank:WP_012719324.1;Name=WP_012719324.1;gbkey=CDS;product=colicin V biosynthesis protein;protein_id=WP_012719324.1;transl_table=11
NC_012633.1	RefSeq	gene	42346	43236	.	+	.	ID=gene48;Name=RAF_RS00245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00245
NC_012633.1	Protein Homology	CDS	42346	43236	.	+	0	ID=cds46;Parent=gene48;Dbxref=Genbank:WP_041471790.1;Name=WP_041471790.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471790.1;transl_table=11
NC_012633.1	RefSeq	gene	43238	43552	.	+	.	ID=gene49;Name=RAF_RS00250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00250
NC_012633.1	Protein Homology	CDS	43238	43552	.	+	0	ID=cds47;Parent=gene49;Dbxref=Genbank:WP_041471791.1;Name=WP_041471791.1;gbkey=CDS;product=cell surface protein;protein_id=WP_041471791.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	43637	43713	.	+	.	ID=id16;Note=RAF_REPEAT014_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	43741	43789	.	-	.	ID=id17;Note=RAF_REPEAT015_RPE-5%2C RPE-5 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	43816	45138	.	-	.	ID=gene50;Name=RAF_RS00255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00255;old_locus_tag=RAF_ORF0045
NC_012633.1	Protein Homology	CDS	43816	45138	.	-	0	ID=cds48;Parent=gene50;Dbxref=Genbank:WP_010976735.1;Name=WP_010976735.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010976735.1;transl_table=11
NC_012633.1	RefSeq	gene	45148	45672	.	-	.	ID=gene51;Name=RAF_RS00260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00260;old_locus_tag=RAF_ORF0046
NC_012633.1	Protein Homology	CDS	45148	45672	.	-	0	ID=cds49;Parent=gene51;Dbxref=Genbank:WP_012719325.1;Name=WP_012719325.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719325.1;transl_table=11
NC_012633.1	RefSeq	gene	45749	46327	.	-	.	ID=gene52;Name=RAF_RS00265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00265;old_locus_tag=RAF_ORF0047
NC_012633.1	Protein Homology	CDS	45749	46327	.	-	0	ID=cds50;Parent=gene52;Dbxref=Genbank:WP_012719326.1;Name=WP_012719326.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719326.1;transl_table=11
NC_012633.1	RefSeq	gene	46473	46670	.	-	.	ID=gene53;Name=RAF_RS00270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00270
NC_012633.1	Protein Homology	CDS	46473	46670	.	-	0	ID=cds51;Parent=gene53;Dbxref=Genbank:WP_004996895.1;Name=WP_004996895.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004996895.1;transl_table=11
NC_012633.1	RefSeq	gene	46735	46938	.	-	.	ID=gene54;Name=RAF_RS00275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00275
NC_012633.1	Protein Homology	CDS	46735	46938	.	-	0	ID=cds52;Parent=gene54;Dbxref=Genbank:WP_049752701.1;Name=WP_049752701.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_049752701.1;transl_table=11
NC_012633.1	RefSeq	gene	47110	47835	.	-	.	ID=gene55;Name=RAF_RS00285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00285;old_locus_tag=RAF_ORF0048
NC_012633.1	Protein Homology	CDS	47110	47835	.	-	0	ID=cds53;Parent=gene55;Dbxref=Genbank:WP_012719327.1;Name=WP_012719327.1;gbkey=CDS;product=3-ketoacyl-ACP reductase;protein_id=WP_012719327.1;transl_table=11
NC_012633.1	RefSeq	gene	48449	49036	.	-	.	ID=gene56;Name=RAF_RS00290;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS00290;partial=true;pseudo=true;start_range=.,48449
NC_012633.1	Protein Homology	CDS	48449	49036	.	-	0	ID=cds54;Parent=gene56;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,48449;transl_table=11
NC_012633.1	RefSeq	gene	49082	49357	.	-	.	ID=gene57;Name=RAF_RS00295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00295
NC_012633.1	Protein Homology	CDS	49082	49357	.	-	0	ID=cds55;Parent=gene57;Dbxref=Genbank:WP_041471792.1;Name=WP_041471792.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471792.1;transl_table=11
NC_012633.1	RefSeq	gene	49351	49752	.	-	.	ID=gene58;Name=RAF_RS00300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00300
NC_012633.1	Protein Homology	CDS	49351	49752	.	-	0	ID=cds56;Parent=gene58;Dbxref=Genbank:WP_041471793.1;Name=WP_041471793.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471793.1;transl_table=11
NC_012633.1	RefSeq	gene	49865	52438	.	+	.	ID=gene59;Name=RAF_RS00305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00305;old_locus_tag=RAF_ORF0052
NC_012633.1	Protein Homology	CDS	49865	52438	.	+	0	ID=cds57;Parent=gene59;Dbxref=Genbank:WP_012719328.1;Name=WP_012719328.1;gbkey=CDS;product=chaperone protein ClpB;protein_id=WP_012719328.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	52567	52654	.	+	.	ID=id18;Note=RAF_REPEAT016_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	52622	53113	.	-	.	ID=gene60;Name=RAF_RS00310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00310;old_locus_tag=RAF_ORF0053
NC_012633.1	Protein Homology	CDS	52622	53113	.	-	0	ID=cds58;Parent=gene60;Dbxref=Genbank:WP_012719329.1;Name=WP_012719329.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719329.1;transl_table=11
NC_012633.1	RefSeq	gene	53240	54274	.	-	.	ID=gene61;Name=RAF_RS00315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00315;old_locus_tag=RAF_ORF0054
NC_012633.1	Protein Homology	CDS	53240	54274	.	-	0	ID=cds59;Parent=gene61;Dbxref=Genbank:WP_012719330.1;Name=WP_012719330.1;gbkey=CDS;product=tRNA N6-adenosine threonylcarbamoyltransferase;protein_id=WP_012719330.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	54360	54383	.	-	.	ID=id19;Note=RAF_REPEAT017_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	54457	55650	.	-	.	ID=gene62;Name=RAF_RS00320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00320;old_locus_tag=RAF_ORF0055
NC_012633.1	Protein Homology	CDS	54457	55650	.	-	0	ID=cds60;Parent=gene62;Dbxref=Genbank:WP_012719331.1;Name=WP_012719331.1;gbkey=CDS;product=acyl-CoA desaturase;protein_id=WP_012719331.1;transl_table=11
NC_012633.1	RefSeq	gene	55798	56109	.	-	.	ID=gene63;Name=RAF_RS00325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00325;old_locus_tag=RAF_ORF0056
NC_012633.1	Protein Homology	CDS	55798	56109	.	-	0	ID=cds61;Parent=gene63;Dbxref=Genbank:WP_012719332.1;Name=WP_012719332.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_012719332.1;transl_table=11
NC_012633.1	RefSeq	gene	56182	56416	.	-	.	ID=gene64;Name=RAF_RS00330;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS00330;pseudo=true
NC_012633.1	Protein Homology	CDS	56182	56416	.	-	0	ID=cds62;Parent=gene64;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(56330..56332)%2Caa:Other),(pos:complement(56318..56320)%2Caa:Other);transl_table=11
NC_012633.1	RefSeq	gene	56603	56968	.	+	.	ID=gene65;Name=RAF_RS00335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00335;old_locus_tag=RAF_ORF0057
NC_012633.1	Protein Homology	CDS	56603	56968	.	+	0	ID=cds63;Parent=gene65;Dbxref=Genbank:WP_010976750.1;Name=WP_010976750.1;gbkey=CDS;product=30S ribosomal protein S6;protein_id=WP_010976750.1;transl_table=11
NC_012633.1	RefSeq	gene	56993	57280	.	+	.	ID=gene66;Name=RAF_RS00340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00340;old_locus_tag=RAF_ORF0058
NC_012633.1	Protein Homology	CDS	56993	57280	.	+	0	ID=cds64;Parent=gene66;Dbxref=Genbank:WP_012719334.1;Name=WP_012719334.1;gbkey=CDS;product=30S ribosomal protein S18;protein_id=WP_012719334.1;transl_table=11
NC_012633.1	RefSeq	gene	57292	57807	.	+	.	ID=gene67;Name=RAF_RS00345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00345;old_locus_tag=RAF_ORF0059
NC_012633.1	Protein Homology	CDS	57292	57807	.	+	0	ID=cds65;Parent=gene67;Dbxref=Genbank:WP_012719335.1;Name=WP_012719335.1;gbkey=CDS;product=50S ribosomal protein L9;protein_id=WP_012719335.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	57891	58008	.	-	.	ID=id20;Note=RAF_REPEAT018_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	58027	58049	.	+	.	ID=id21;Note=RAF_REPEAT019_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	58106	59542	.	+	.	ID=gene68;Name=RAF_RS00350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00350;old_locus_tag=RAF_ORF0060
NC_012633.1	Protein Homology	CDS	58106	59542	.	+	0	ID=cds66;Parent=gene68;Dbxref=Genbank:WP_012719336.1;Name=WP_012719336.1;gbkey=CDS;product=tRNA(Ile)-lysidine synthase;protein_id=WP_012719336.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	58730	58873	.	+	.	ID=id22;Note=RAF_REPEAT020_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	59643	61556	.	+	.	ID=gene69;Name=RAF_RS00355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00355;old_locus_tag=RAF_ORF0061
NC_012633.1	Protein Homology	CDS	59643	61556	.	+	0	ID=cds67;Parent=gene69;Dbxref=Genbank:WP_012719337.1;Name=WP_012719337.1;gbkey=CDS;product=ATP-dependent zinc metalloprotease FtsH;protein_id=WP_012719337.1;transl_table=11
NC_012633.1	RefSeq	gene	61645	61842	.	+	.	ID=gene70;Name=RAF_RS00360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00360;old_locus_tag=RAF_ORF0062
NC_012633.1	Protein Homology	CDS	61645	61842	.	+	0	ID=cds68;Parent=gene70;Dbxref=Genbank:WP_012719338.1;Name=WP_012719338.1;gbkey=CDS;product=DNA methyltransferase;protein_id=WP_012719338.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	62002	62126	.	-	.	ID=id23;Note=RAF_REPEAT021_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	62194	62311	.	-	.	ID=id24;Note=RAF_REPEAT022_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	62463	63248	.	+	.	ID=gene71;Name=RAF_RS00365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00365;old_locus_tag=RAF_ORF0063
NC_012633.1	Protein Homology	CDS	62463	63248	.	+	0	ID=cds69;Parent=gene71;Dbxref=Genbank:WP_012719339.1;Name=WP_012719339.1;gbkey=CDS;product=succinate dehydrogenase iron-sulfur subunit;protein_id=WP_012719339.1;transl_table=11
NC_012633.1	RefSeq	gene	63338	63691	.	+	.	ID=gene72;Name=RAF_RS00370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00370;old_locus_tag=RAF_ORF0064
NC_012633.1	Protein Homology	CDS	63338	63691	.	+	0	ID=cds70;Parent=gene72;Dbxref=Genbank:WP_041471990.1;Name=WP_041471990.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471990.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	63662	63798	.	-	.	ID=id25;Note=RAF_REPEAT023_RPE-8%2C RPE-8 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	63834	65054	.	-	.	ID=gene73;Name=RAF_RS00375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00375;old_locus_tag=RAF_ORF0065
NC_012633.1	Protein Homology	CDS	63834	65054	.	-	0	ID=cds71;Parent=gene73;Dbxref=Genbank:WP_012719341.1;Name=WP_012719341.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719341.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	63927	64070	.	-	.	ID=id26;Note=RAF_REPEAT024_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	65033	65812	.	-	.	ID=gene74;Name=RAF_RS00380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00380;old_locus_tag=RAF_ORF0066
NC_012633.1	Protein Homology	CDS	65033	65812	.	-	0	ID=cds72;Parent=gene74;Dbxref=Genbank:WP_012719342.1;Name=WP_012719342.1;gbkey=CDS;product=prolipoprotein diacylglyceryl transferase;protein_id=WP_012719342.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	65853	65915	.	-	.	ID=id27;Note=RAF_REPEAT025_RPE-7%2C RPE-7 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	66057	67220	.	+	.	ID=gene75;Name=RAF_RS00385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00385;old_locus_tag=RAF_ORF0067
NC_012633.1	Protein Homology	CDS	66057	67220	.	+	0	ID=cds73;Parent=gene75;Dbxref=Genbank:WP_012719343.1;Name=WP_012719343.1;gbkey=CDS;product=mechanosensitive ion channel protein;protein_id=WP_012719343.1;transl_table=11
NC_012633.1	RefSeq	gene	67404	69086	.	+	.	ID=gene76;Name=RAF_RS00390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00390;old_locus_tag=RAF_ORF0068
NC_012633.1	Protein Homology	CDS	67404	69086	.	+	0	ID=cds74;Parent=gene76;Dbxref=Genbank:WP_012719344.1;Name=WP_012719344.1;gbkey=CDS;product=protein translocase component YidC;protein_id=WP_012719344.1;transl_table=11
NC_012633.1	RefSeq	gene	69086	69631	.	+	.	ID=gene77;Name=RAF_RS00395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00395;old_locus_tag=RAF_ORF0069
NC_012633.1	Protein Homology	CDS	69086	69631	.	+	0	ID=cds75;Parent=gene77;Dbxref=Genbank:WP_012719345.1;Name=WP_012719345.1;gbkey=CDS;product=CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase;protein_id=WP_012719345.1;transl_table=11
NC_012633.1	RefSeq	gene	69719	70204	.	+	.	ID=gene78;Name=RAF_RS00400;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS00400;pseudo=true
NC_012633.1	Protein Homology	CDS	69719	70204	.	+	0	ID=cds76;Parent=gene78;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:69860..69862%2Caa:Other);transl_table=11
NC_012633.1	RefSeq	repeat_region	70236	70310	.	-	.	ID=id28;Note=RAF_REPEAT026_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	70374	70757	.	-	.	ID=gene79;Name=RAF_RS00405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00405;old_locus_tag=RAF_ORF0072
NC_012633.1	Protein Homology	CDS	70374	70757	.	-	0	ID=cds77;Parent=gene79;Dbxref=Genbank:WP_041471794.1;Name=WP_041471794.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471794.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	70814	70957	.	-	.	ID=id29;Note=RAF_REPEAT027_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	70977	71249	.	+	.	ID=gene80;Name=RAF_RS00410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00410;old_locus_tag=RAF_ORF0073
NC_012633.1	Protein Homology	CDS	70977	71249	.	+	0	ID=cds78;Parent=gene80;Dbxref=Genbank:WP_012719349.1;Name=WP_012719349.1;gbkey=CDS;product=tellurite resistance protein;protein_id=WP_012719349.1;transl_table=11
NC_012633.1	RefSeq	gene	71481	71621	.	+	.	ID=gene81;Name=RAF_RS00415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00415
NC_012633.1	Protein Homology	CDS	71481	71621	.	+	0	ID=cds79;Parent=gene81;Dbxref=Genbank:WP_016769756.1;Name=WP_016769756.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_016769756.1;transl_table=11
NC_012633.1	RefSeq	gene	71813	72661	.	+	.	ID=gene82;Name=RAF_RS00420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00420;old_locus_tag=RAF_ORF0074
NC_012633.1	Protein Homology	CDS	71813	72661	.	+	0	ID=cds80;Parent=gene82;Dbxref=Genbank:WP_012719350.1;Name=WP_012719350.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719350.1;transl_table=11
NC_012633.1	RefSeq	gene	72879	73553	.	-	.	ID=gene83;Name=RAF_RS00425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00425;old_locus_tag=RAF_ORF0075
NC_012633.1	Protein Homology	CDS	72879	73553	.	-	0	ID=cds81;Parent=gene83;Dbxref=Genbank:WP_012719351.1;Name=WP_012719351.1;gbkey=CDS;product=peptide deformylase;protein_id=WP_012719351.1;transl_table=11
NC_012633.1	RefSeq	gene	73752	75257	.	+	.	ID=gene84;Name=RAF_RS00430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00430;old_locus_tag=RAF_ORF0076
NC_012633.1	Protein Homology	CDS	73752	75257	.	+	0	ID=cds82;Parent=gene84;Dbxref=Genbank:WP_012719352.1;Name=WP_012719352.1;gbkey=CDS;product=ATPase AAA;protein_id=WP_012719352.1;transl_table=11
NC_012633.1	RefSeq	gene	75316	76611	.	+	.	ID=gene85;Name=RAF_RS00435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00435;old_locus_tag=RAF_ORF0077
NC_012633.1	Protein Homology	CDS	75316	76611	.	+	0	ID=cds83;Parent=gene85;Dbxref=Genbank:WP_012719353.1;Name=WP_012719353.1;gbkey=CDS;product=MFS transporter;protein_id=WP_012719353.1;transl_table=11
NC_012633.1	RefSeq	gene	76636	77058	.	+	.	ID=gene86;Name=ndk;gbkey=Gene;gene=ndk;gene_biotype=protein_coding;locus_tag=RAF_RS00440;old_locus_tag=RAF_ORF0078
NC_012633.1	Protein Homology	CDS	76636	77058	.	+	0	ID=cds84;Parent=gene86;Dbxref=Genbank:WP_010976767.1;Name=WP_010976767.1;Note=catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate;gbkey=CDS;gene=ndk;product=nucleoside diphosphate kinase;protein_id=WP_010976767.1;transl_table=11
NC_012633.1	RefSeq	gene	77062	78930	.	+	.	ID=gene87;Name=RAF_RS00445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00445;old_locus_tag=RAF_ORF0079
NC_012633.1	Protein Homology	CDS	77062	78930	.	+	0	ID=cds85;Parent=gene87;Dbxref=Genbank:WP_012719354.1;Name=WP_012719354.1;gbkey=CDS;product=tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG;protein_id=WP_012719354.1;transl_table=11
NC_012633.1	RefSeq	gene	78911	79489	.	+	.	ID=gene88;Name=RAF_RS00450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00450;old_locus_tag=RAF_ORF0080
NC_012633.1	Protein Homology	CDS	78911	79489	.	+	0	ID=cds86;Parent=gene88;Dbxref=Genbank:WP_010976769.1;Name=WP_010976769.1;gbkey=CDS;product=ribosomal RNA small subunit methyltransferase G;protein_id=WP_010976769.1;transl_table=11
NC_012633.1	RefSeq	gene	79486	80253	.	+	.	ID=gene89;Name=RAF_RS00455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00455;old_locus_tag=RAF_ORF0081
NC_012633.1	Protein Homology	CDS	79486	80253	.	+	0	ID=cds87;Parent=gene89;Dbxref=Genbank:WP_012719355.1;Name=WP_012719355.1;gbkey=CDS;product=chromosome partitioning protein ParA;protein_id=WP_012719355.1;transl_table=11
NC_012633.1	RefSeq	gene	80240	81100	.	+	.	ID=gene90;Name=RAF_RS00460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00460;old_locus_tag=RAF_ORF0082
NC_012633.1	Protein Homology	CDS	80240	81100	.	+	0	ID=cds88;Parent=gene90;Dbxref=Genbank:WP_012719356.1;Name=WP_012719356.1;gbkey=CDS;product=chromosome partitioning protein ParB;protein_id=WP_012719356.1;transl_table=11
NC_012633.1	RefSeq	gene	81358	83025	.	+	.	ID=gene91;Name=RAF_RS00465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00465;old_locus_tag=RAF_ORF0083
NC_012633.1	Protein Homology	CDS	81358	83025	.	+	0	ID=cds89;Parent=gene91;Dbxref=Genbank:WP_012719357.1;Name=WP_012719357.1;gbkey=CDS;product=heme ABC transporter ATP-binding protein;protein_id=WP_012719357.1;transl_table=11
NC_012633.1	RefSeq	gene	83028	83345	.	+	.	ID=gene92;Name=RAF_RS00470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00470;old_locus_tag=RAF_ORF0084
NC_012633.1	Protein Homology	CDS	83028	83345	.	+	0	ID=cds90;Parent=gene92;Dbxref=Genbank:WP_004996813.1;Name=WP_004996813.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004996813.1;transl_table=11
NC_012633.1	RefSeq	gene	83381	84205	.	+	.	ID=gene93;Name=RAF_RS00475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00475;old_locus_tag=RAF_ORF0085
NC_012633.1	Protein Homology	CDS	83381	84205	.	+	0	ID=cds91;Parent=gene93;Dbxref=Genbank:WP_012719358.1;Name=WP_012719358.1;gbkey=CDS;product=2-dehydro-3-deoxyphosphooctonate aldolase;protein_id=WP_012719358.1;transl_table=11
NC_012633.1	RefSeq	gene	84933	85400	.	+	.	ID=gene94;Name=RAF_RS00480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00480;old_locus_tag=RAF_ORF0086
NC_012633.1	Protein Homology	CDS	84933	85400	.	+	0	ID=cds92;Parent=gene94;Dbxref=Genbank:WP_012719359.1;Name=WP_012719359.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719359.1;transl_table=11
NC_012633.1	RefSeq	gene	85967	86299	.	-	.	ID=gene95;Name=RAF_RS00485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00485;old_locus_tag=RAF_ORF0087
NC_012633.1	Protein Homology	CDS	85967	86299	.	-	0	ID=cds93;Parent=gene95;Dbxref=Genbank:WP_012719360.1;Name=WP_012719360.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719360.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	86409	86483	.	+	.	ID=id30;Note=RAF_REPEAT028_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	86529	87683	.	+	.	ID=gene96;Name=RAF_RS00490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00490;old_locus_tag=RAF_ORF0088
NC_012633.1	Protein Homology	CDS	86529	87683	.	+	0	ID=cds94;Parent=gene96;Dbxref=Genbank:WP_010976778.1;Name=WP_010976778.1;gbkey=CDS;product=deoxyguanosinetriphosphate triphosphohydrolase;protein_id=WP_010976778.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	87658	87803	.	-	.	ID=id31;Note=RAF_REPEAT029_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	87835	89565	.	+	.	ID=gene97;Name=RAF_RS00495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00495;old_locus_tag=RAF_ORF0089
NC_012633.1	Protein Homology	CDS	87835	89565	.	+	0	ID=cds95;Parent=gene97;Dbxref=Genbank:WP_012719361.1;Name=WP_012719361.1;gbkey=CDS;product=arginine--tRNA ligase;protein_id=WP_012719361.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	89642	89711	.	+	.	ID=id32;Note=RAF_REPEAT030_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	89738	90412	.	+	.	ID=gene98;Name=RAF_RS00500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00500;old_locus_tag=RAF_ORF0090
NC_012633.1	Protein Homology	CDS	89738	90412	.	+	0	ID=cds96;Parent=gene98;Dbxref=Genbank:WP_010976780.1;Name=WP_010976780.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010976780.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	90428	90545	.	-	.	ID=id33;Note=RAF_REPEAT031_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	90590	92806	.	+	.	ID=gene99;Name=RAF_RS00505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00505;old_locus_tag=RAF_ORF0092
NC_012633.1	Protein Homology	CDS	90590	92806	.	+	0	ID=cds97;Parent=gene99;Dbxref=Genbank:WP_012719363.1;Name=WP_012719363.1;gbkey=CDS;product=DNA topoisomerase IV subunit A;protein_id=WP_012719363.1;transl_table=11
NC_012633.1	RefSeq	gene	92798	93013	.	-	.	ID=gene100;Name=RAF_RS00510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00510;old_locus_tag=RAF_ORF0093
NC_012633.1	Protein Homology	CDS	92798	93013	.	-	0	ID=cds98;Parent=gene100;Dbxref=Genbank:WP_041471795.1;Name=WP_041471795.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471795.1;transl_table=11
NC_012633.1	RefSeq	gene	93399	94715	.	-	.	ID=gene101;Name=RAF_RS00515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00515;old_locus_tag=RAF_ORF0094
NC_012633.1	Protein Homology	CDS	93399	94715	.	-	0	ID=cds99;Parent=gene101;Dbxref=Genbank:WP_012719365.1;Name=WP_012719365.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719365.1;transl_table=11
NC_012633.1	RefSeq	gene	94987	95553	.	+	.	ID=gene102;Name=RAF_RS00520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00520;old_locus_tag=RAF_ORF0095
NC_012633.1	Protein Homology	CDS	94987	95553	.	+	0	ID=cds100;Parent=gene102;Dbxref=Genbank:WP_004996797.1;Name=WP_004996797.1;gbkey=CDS;product=deoxycytidine triphosphate deaminase;protein_id=WP_004996797.1;transl_table=11
NC_012633.1	RefSeq	gene	95599	96057	.	+	.	ID=gene103;Name=RAF_RS00525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00525;old_locus_tag=RAF_ORF0096
NC_012633.1	Protein Homology	CDS	95599	96057	.	+	0	ID=cds101;Parent=gene103;Dbxref=Genbank:WP_012719366.1;Name=WP_012719366.1;gbkey=CDS;product=protein-export protein SecB;protein_id=WP_012719366.1;transl_table=11
NC_012633.1	RefSeq	gene	96276	96989	.	+	.	ID=gene104;Name=RAF_RS00530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00530;old_locus_tag=RAF_ORF0097
NC_012633.1	Protein Homology	CDS	96276	96989	.	+	0	ID=cds102;Parent=gene104;Dbxref=Genbank:WP_012719367.1;Name=WP_012719367.1;gbkey=CDS;product=two-component system response regulator;protein_id=WP_012719367.1;transl_table=11
NC_012633.1	RefSeq	gene	96993	97814	.	+	.	ID=gene105;Name=RAF_RS00535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00535;old_locus_tag=RAF_ORF0098
NC_012633.1	Protein Homology	CDS	96993	97814	.	+	0	ID=cds103;Parent=gene105;Dbxref=Genbank:WP_012719368.1;Name=WP_012719368.1;gbkey=CDS;product=NADPH-dependent 7-cyano-7-deazaguanine reductase;protein_id=WP_012719368.1;transl_table=11
NC_012633.1	RefSeq	gene	98059	98619	.	-	.	ID=gene106;Name=RAF_RS00540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00540;old_locus_tag=RAF_ORF0099
NC_012633.1	Protein Homology	CDS	98059	98619	.	-	0	ID=cds104;Parent=gene106;Dbxref=Genbank:WP_010976786.1;Name=WP_010976786.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010976786.1;transl_table=11
NC_012633.1	RefSeq	gene	98674	100071	.	-	.	ID=gene107;Name=RAF_RS00545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00545;old_locus_tag=RAF_ORF0100
NC_012633.1	Protein Homology	CDS	98674	100071	.	-	0	ID=cds105;Parent=gene107;Dbxref=Genbank:WP_012719369.1;Name=WP_012719369.1;gbkey=CDS;product=NAD synthetase;protein_id=WP_012719369.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	99463	99715	.	+	.	ID=id34;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	100105	100183	.	-	.	ID=id35;Note=RAF_REPEAT032_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	100212	100946	.	-	.	ID=gene108;Name=RAF_RS00550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00550;old_locus_tag=RAF_ORF0101
NC_012633.1	Protein Homology	CDS	100212	100946	.	-	0	ID=cds106;Parent=gene108;Dbxref=Genbank:WP_012719370.1;Name=WP_012719370.1;gbkey=CDS;product=membrane protein;protein_id=WP_012719370.1;transl_table=11
NC_012633.1	RefSeq	gene	101101	101985	.	+	.	ID=gene109;Name=RAF_RS00555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00555;old_locus_tag=RAF_ORF0102
NC_012633.1	Protein Homology	CDS	101101	101985	.	+	0	ID=cds107;Parent=gene109;Dbxref=Genbank:WP_004996775.1;Name=WP_004996775.1;gbkey=CDS;product=S-adenosylmethionine uptake transporter;protein_id=WP_004996775.1;transl_table=11
NC_012633.1	RefSeq	gene	101972	103228	.	+	.	ID=gene110;Name=RAF_RS00560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00560;old_locus_tag=RAF_ORF0103
NC_012633.1	Protein Homology	CDS	101972	103228	.	+	0	ID=cds108;Parent=gene110;Dbxref=Genbank:WP_012719371.1;Name=WP_012719371.1;gbkey=CDS;product=7-cyano-7-deazaguanine reductase;protein_id=WP_012719371.1;transl_table=11
NC_012633.1	RefSeq	gene	103509	103721	.	+	.	ID=gene111;Name=RAF_RS00565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00565
NC_012633.1	Protein Homology	CDS	103509	103721	.	+	0	ID=cds109;Parent=gene111;Dbxref=Genbank:WP_014273150.1;Name=WP_014273150.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_014273150.1;transl_table=11
NC_012633.1	RefSeq	gene	103809	103883	.	+	.	ID=gene112;Name=RAF_RS00570;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS00570;old_locus_tag=RAF_RNA03
NC_012633.1	tRNAscan-SE	tRNA	103809	103883	.	+	.	ID=rna2;Parent=gene112;anticodon=(pos:103841..103843);gbkey=tRNA;product=tRNA-Thr
NC_012633.1	tRNAscan-SE	exon	103809	103883	.	+	.	ID=id36;Parent=rna2;anticodon=(pos:103841..103843);gbkey=tRNA;product=tRNA-Thr
NC_012633.1	RefSeq	gene	104062	104364	.	+	.	ID=gene113;Name=RAF_RS00575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00575;old_locus_tag=RAF_ORF0104
NC_012633.1	Protein Homology	CDS	104062	104364	.	+	0	ID=cds110;Parent=gene113;Dbxref=Genbank:WP_012719372.1;Name=WP_012719372.1;gbkey=CDS;product=preprotein translocase subunit SecG;protein_id=WP_012719372.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	104489	104519	.	+	.	ID=id37;Note=RAF_REPEAT033_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	105266	111067	.	-	.	ID=gene114;Name=RAF_RS00580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00580
NC_012633.1	Protein Homology	CDS	105266	111067	.	-	0	ID=cds111;Parent=gene114;Dbxref=Genbank:WP_012719373.1;Name=WP_012719373.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719373.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	106598	107029	.	+	.	ID=id38;gbkey=repeat_region
NC_012633.1	RefSeq	gene	111304	112683	.	+	.	ID=gene115;Name=RAF_RS00585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00585;old_locus_tag=RAF_ORF0106
NC_012633.1	Protein Homology	CDS	111304	112683	.	+	0	ID=cds112;Parent=gene115;Dbxref=Genbank:WP_012719374.1;Name=WP_012719374.1;gbkey=CDS;product=cysteine--tRNA ligase;protein_id=WP_012719374.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	112734	112801	.	-	.	ID=id39;Note=RAF_REPEAT034_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	112930	113817	.	+	.	ID=gene116;Name=RAF_RS00590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00590;old_locus_tag=RAF_ORF0107
NC_012633.1	Protein Homology	CDS	112930	113817	.	+	0	ID=cds113;Parent=gene116;Dbxref=Genbank:WP_004996764.1;Name=WP_004996764.1;gbkey=CDS;product=30S ribosomal protein S2;protein_id=WP_004996764.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	113846	113953	.	+	.	ID=id40;Note=RAF_REPEAT035_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	114014	114943	.	+	.	ID=gene117;Name=RAF_RS00595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00595;old_locus_tag=RAF_ORF0108
NC_012633.1	Protein Homology	CDS	114014	114943	.	+	0	ID=cds114;Parent=gene117;Dbxref=Genbank:WP_012719375.1;Name=WP_012719375.1;gbkey=CDS;product=elongation factor Ts;protein_id=WP_012719375.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	115034	115131	.	+	.	ID=id41;Note=RAF_REPEAT036_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	115416	115918	.	+	.	ID=gene118;Name=RAF_RS00600;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS00600;pseudo=true
NC_012633.1	Protein Homology	CDS	115416	115918	.	+	0	ID=cds115;Parent=gene118;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	115908	116101	.	+	.	ID=gene119;Name=RAF_RS00605;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS00605;pseudo=true
NC_012633.1	Protein Homology	CDS	115908	116101	.	+	0	ID=cds116;Parent=gene119;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	116098	116316	.	+	.	ID=gene120;Name=RAF_RS00610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00610
NC_012633.1	Protein Homology	CDS	116098	116316	.	+	0	ID=cds117;Parent=gene120;Dbxref=Genbank:WP_041471796.1;Name=WP_041471796.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471796.1;transl_table=11
NC_012633.1	RefSeq	gene	116460	117854	.	-	.	ID=gene121;Name=RAF_RS00615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00615;old_locus_tag=RAF_ORF0110
NC_012633.1	Protein Homology	CDS	116460	117854	.	-	0	ID=cds118;Parent=gene121;Dbxref=Genbank:WP_012719377.1;Name=WP_012719377.1;gbkey=CDS;product=3-deoxy-D-manno-octulosonic acid transferase;protein_id=WP_012719377.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	117565	117708	.	-	.	ID=id42;Note=RAF_REPEAT037_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	117851	118507	.	-	.	ID=gene122;Name=RAF_RS00620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00620;old_locus_tag=RAF_ORF0111
NC_012633.1	Protein Homology	CDS	117851	118507	.	-	0	ID=cds119;Parent=gene122;Dbxref=Genbank:WP_004996752.1;Name=WP_004996752.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004996752.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	118546	118611	.	-	.	ID=id43;Note=RAF_REPEAT038_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	118658	119863	.	-	.	ID=gene123;Name=RAF_RS00625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00625;old_locus_tag=RAF_ORF0112
NC_012633.1	Protein Homology	CDS	118658	119863	.	-	0	ID=cds120;Parent=gene123;Dbxref=Genbank:WP_012719378.1;Name=WP_012719378.1;Note=catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate;gbkey=CDS;product=aspartate aminotransferase;protein_id=WP_012719378.1;transl_table=11
NC_012633.1	RefSeq	gene	120524	121528	.	+	.	ID=gene124;Name=RAF_RS00630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00630;old_locus_tag=RAF_ORF0113
NC_012633.1	Protein Homology	CDS	120524	121528	.	+	0	ID=cds121;Parent=gene124;Dbxref=Genbank:WP_012719379.1;Name=WP_012719379.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719379.1;transl_table=11
NC_012633.1	RefSeq	gene	121533	122288	.	+	.	ID=gene125;Name=RAF_RS00635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00635;old_locus_tag=RAF_ORF0114
NC_012633.1	Protein Homology	CDS	121533	122288	.	+	0	ID=cds122;Parent=gene125;Dbxref=Genbank:WP_012719380.1;Name=WP_012719380.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719380.1;transl_table=11
NC_012633.1	RefSeq	gene	122308	122907	.	+	.	ID=gene126;Name=RAF_RS00640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00640;old_locus_tag=RAF_ORF0115
NC_012633.1	Protein Homology	CDS	122308	122907	.	+	0	ID=cds123;Parent=gene126;Dbxref=Genbank:WP_012719381.1;Name=WP_012719381.1;gbkey=CDS;product=toluene ABC transporter substrate-binding protein;protein_id=WP_012719381.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	122971	123045	.	-	.	ID=id44;Note=RAF_REPEAT039_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	123390	123740	.	+	.	ID=gene127;Name=RAF_RS00645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00645
NC_012633.1	Protein Homology	CDS	123390	123740	.	+	0	ID=cds124;Parent=gene127;Dbxref=Genbank:WP_041471797.1;Name=WP_041471797.1;gbkey=CDS;product=ribose-phosphate pyrophosphokinase;protein_id=WP_041471797.1;transl_table=11
NC_012633.1	RefSeq	gene	123721	123888	.	+	.	ID=gene128;Name=RAF_RS00650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00650
NC_012633.1	Protein Homology	CDS	123721	123888	.	+	0	ID=cds125;Parent=gene128;Dbxref=Genbank:WP_041471798.1;Name=WP_041471798.1;gbkey=CDS;product=ribose-phosphate pyrophosphokinase;protein_id=WP_041471798.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	123901	124044	.	+	.	ID=id45;Note=RAF_REPEAT040_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	123919	124039	.	+	.	ID=id46;gbkey=repeat_region
NC_012633.1	RefSeq	gene	124151	125218	.	+	.	ID=gene129;Name=RAF_RS00655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00655;old_locus_tag=RAF_ORF0118
NC_012633.1	Protein Homology	CDS	124151	125218	.	+	0	ID=cds126;Parent=gene129;Dbxref=Genbank:WP_012719382.1;Name=WP_012719382.1;gbkey=CDS;product=alanine racemase;protein_id=WP_012719382.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	125216	125293	.	-	.	ID=id47;Note=RAF_REPEAT041_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	125301	125332	.	+	.	ID=id48;Note=RAF_REPEAT042_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	125364	126143	.	+	.	ID=gene130;Name=RAF_RS00660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00660;old_locus_tag=RAF_ORF0119
NC_012633.1	Protein Homology	CDS	125364	126143	.	+	0	ID=cds127;Parent=gene130;Dbxref=Genbank:WP_004996740.1;Name=WP_004996740.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_004996740.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	126147	126269	.	-	.	ID=id49;Note=RAF_REPEAT043_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	126297	127052	.	+	.	ID=gene131;Name=RAF_RS00665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00665;old_locus_tag=RAF_ORF0120
NC_012633.1	Protein Homology	CDS	126297	127052	.	+	0	ID=cds128;Parent=gene131;Dbxref=Genbank:WP_012719383.1;Name=WP_012719383.1;gbkey=CDS;product=organic solvent ABC transporter ATP-binding protein;protein_id=WP_012719383.1;transl_table=11
NC_012633.1	RefSeq	gene	127054	127302	.	+	.	ID=gene132;Name=RAF_RS00670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00670;old_locus_tag=RAF_ORF0121
NC_012633.1	Protein Homology	CDS	127054	127302	.	+	0	ID=cds129;Parent=gene132;Dbxref=Genbank:WP_004996738.1;Name=WP_004996738.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004996738.1;transl_table=11
NC_012633.1	RefSeq	gene	127380	127592	.	-	.	ID=gene133;Name=RAF_RS00675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00675
NC_012633.1	Protein Homology	CDS	127380	127592	.	-	0	ID=cds130;Parent=gene133;Dbxref=Genbank:WP_041471799.1;Name=WP_041471799.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471799.1;transl_table=11
NC_012633.1	RefSeq	gene	127503	127784	.	-	.	ID=gene134;Name=RAF_RS00680;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS00680;partial=true;pseudo=true;start_range=.,127503
NC_012633.1	Protein Homology	CDS	127503	127784	.	-	0	ID=cds131;Parent=gene134;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,127503;transl_except=(pos:complement(127668..127670)%2Caa:Other);transl_table=11
NC_012633.1	RefSeq	gene	127867	128163	.	-	.	ID=gene135;Name=RAF_RS00685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00685;old_locus_tag=RAF_ORF0122
NC_012633.1	Protein Homology	CDS	127867	128163	.	-	0	ID=cds132;Parent=gene135;Dbxref=Genbank:WP_012719384.1;Name=WP_012719384.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719384.1;transl_table=11
NC_012633.1	RefSeq	gene	128077	128289	.	-	.	ID=gene136;Name=RAF_RS00690;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS00690;partial=true;pseudo=true;start_range=.,128077
NC_012633.1	Protein Homology	CDS	128077	128289	.	-	0	ID=cds133;Parent=gene136;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,128077;transl_except=(pos:complement(128173..128175)%2Caa:Other);transl_table=11
NC_012633.1	RefSeq	gene	128471	128842	.	-	.	ID=gene137;Name=RAF_RS00695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00695;old_locus_tag=RAF_ORF0123
NC_012633.1	Protein Homology	CDS	128471	128842	.	-	0	ID=cds134;Parent=gene137;Dbxref=Genbank:WP_012719385.1;Name=WP_012719385.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719385.1;transl_table=11
NC_012633.1	RefSeq	gene	128741	128963	.	-	.	ID=gene138;Name=RAF_RS00700;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS00700;partial=true;pseudo=true;start_range=.,128741
NC_012633.1	Protein Homology	CDS	128741	128963	.	-	0	ID=cds135;Parent=gene138;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,128741;transl_table=11
NC_012633.1	RefSeq	repeat_region	129576	129699	.	-	.	ID=id50;Note=RAF_REPEAT044_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	129752	130045	.	+	.	ID=gene139;Name=RAF_RS00705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00705;old_locus_tag=RAF_ORF0124
NC_012633.1	Protein Homology	CDS	129752	130045	.	+	0	ID=cds136;Parent=gene139;Dbxref=Genbank:WP_004996729.1;Name=WP_004996729.1;gbkey=CDS;product=50S ribosomal protein L28;protein_id=WP_004996729.1;transl_table=11
NC_012633.1	RefSeq	gene	130042	130278	.	+	.	ID=gene140;Name=RAF_RS00710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00710;old_locus_tag=RAF_ORF0125
NC_012633.1	Protein Homology	CDS	130042	130278	.	+	0	ID=cds137;Parent=gene140;Dbxref=Genbank:WP_004996719.1;Name=WP_004996719.1;Note=RpmE%3B RpmE2%3B there appears to be two types of ribosomal proteins L31 in bacterial genomes%3B some contain a CxxC motif while others do not%3B Bacillus subtilis has both types%3B RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth%3B expression of ytiA is controlled by a zinc-specific transcriptional repressor%3B RpmE contains one zinc ion and a CxxC motif is responsible for this binding%3B forms an RNP particle along with proteins L5%2C L18%2C and L25 and 5S rRNA%3B found crosslinked to L2 and L25 and EF-G%3B may be near the peptidyltransferase site of the 50S ribosome;gbkey=CDS;product=50S ribosomal protein L31;protein_id=WP_004996719.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	130302	130396	.	-	.	ID=id51;Note=RAF_REPEAT045_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	130479	130555	.	+	.	ID=gene141;Name=RAF_RS00715;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS00715;old_locus_tag=RAF_RNA04
NC_012633.1	tRNAscan-SE	tRNA	130479	130555	.	+	.	ID=rna3;Parent=gene141;anticodon=(pos:130513..130515);gbkey=tRNA;product=tRNA-Met
NC_012633.1	tRNAscan-SE	exon	130479	130555	.	+	.	ID=id52;Parent=rna3;anticodon=(pos:130513..130515);gbkey=tRNA;product=tRNA-Met
NC_012633.1	RefSeq	repeat_region	130693	130790	.	-	.	ID=id53;Note=RAF_REPEAT046_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	130886	131524	.	+	.	ID=gene142;Name=RAF_RS00720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00720;old_locus_tag=RAF_ORF0126
NC_012633.1	Protein Homology	CDS	130886	131524	.	+	0	ID=cds138;Parent=gene142;Dbxref=Genbank:WP_012719386.1;Name=WP_012719386.1;gbkey=CDS;product=GTP-binding protein;protein_id=WP_012719386.1;transl_table=11
NC_012633.1	RefSeq	gene	131472	132395	.	+	.	ID=gene143;Name=RAF_RS00725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00725;old_locus_tag=RAF_ORF0127
NC_012633.1	Protein Homology	CDS	131472	132395	.	+	0	ID=cds139;Parent=gene143;Dbxref=Genbank:WP_012719387.1;Name=WP_012719387.1;gbkey=CDS;product=acetylglutamate kinase;protein_id=WP_012719387.1;transl_table=11
NC_012633.1	RefSeq	gene	132408	132695	.	+	.	ID=gene144;Name=RAF_RS00730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00730;old_locus_tag=RAF_ORF0128
NC_012633.1	Protein Homology	CDS	132408	132695	.	+	0	ID=cds140;Parent=gene144;Dbxref=Genbank:WP_010976817.1;Name=WP_010976817.1;gbkey=CDS;product=type VI secretion protein;protein_id=WP_010976817.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	132706	132731	.	+	.	ID=id54;Note=RAF_REPEAT047_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	132785	135202	.	+	.	ID=gene145;Name=RAF_RS00735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00735;old_locus_tag=RAF_ORF0129
NC_012633.1	Protein Homology	CDS	132785	135202	.	+	0	ID=cds141;Parent=gene145;Dbxref=Genbank:WP_012719388.1;Name=WP_012719388.1;gbkey=CDS;product=transporter;protein_id=WP_012719388.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	135212	135291	.	+	.	ID=id55;Note=RAF_REPEAT048_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	135320	137974	.	+	.	ID=gene146;Name=RAF_RS00740;end_range=137974,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS00740;old_locus_tag=RAF_ORF0130;partial=true;pseudo=true
NC_012633.1	Protein Homology	CDS	135320	137974	.	+	0	ID=cds142;Parent=gene146;end_range=137974,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	repeat_region	137753	138030	.	+	.	ID=id56;gbkey=repeat_region
NC_012633.1	RefSeq	gene	138426	140412	.	+	.	ID=gene147;Name=RAF_RS00745;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS00745;pseudo=true
NC_012633.1	Protein Homology	CDS	138426	140412	.	+	0	ID=cds143;Parent=gene147;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	140419	143319	.	+	.	ID=gene148;Name=RAF_RS00750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00750;old_locus_tag=RAF_ORF0133
NC_012633.1	Protein Homology	CDS	140419	143319	.	+	0	ID=cds144;Parent=gene148;Dbxref=Genbank:WP_012719390.1;Name=WP_012719390.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719390.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	143337	143404	.	-	.	ID=id57;Note=RAF_REPEAT049_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	143493	146168	.	+	.	ID=gene149;Name=RAF_RS00755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00755;old_locus_tag=RAF_ORF0134
NC_012633.1	Protein Homology	CDS	143493	146168	.	+	0	ID=cds145;Parent=gene149;Dbxref=Genbank:WP_012719391.1;Name=WP_012719391.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719391.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	146186	146260	.	-	.	ID=id58;Note=RAF_REPEAT050_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	146321	149782	.	+	.	ID=gene150;Name=RAF_RS00760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00760;old_locus_tag=RAF_ORF0135
NC_012633.1	Protein Homology	CDS	146321	149782	.	+	0	ID=cds146;Parent=gene150;Dbxref=Genbank:WP_012719392.1;Name=WP_012719392.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719392.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	150047	150183	.	+	.	ID=id59;Note=RAF_REPEAT051_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	150354	151407	.	+	.	ID=gene151;Name=RAF_RS00765;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS00765;pseudo=true
NC_012633.1	Protein Homology	CDS	150354	151407	.	+	0	ID=cds147;Parent=gene151;exception=annotated by transcript or proteomic data;gbkey=CDS;product=phosphate acetyltransferase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	151407	152554	.	+	.	ID=gene152;Name=RAF_RS00770;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS00770;pseudo=true
NC_012633.1	Protein Homology	CDS	151407	152554	.	+	0	ID=cds148;Parent=gene152;exception=annotated by transcript or proteomic data;gbkey=CDS;product=acetate kinase;pseudo=true;transl_except=(pos:151545..151547%2Caa:Other),(pos:152393..152395%2Caa:Other);transl_table=11
NC_012633.1	RefSeq	gene	152779	153074	.	+	.	ID=gene153;Name=RAF_RS00775;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS00775;pseudo=true
NC_012633.1	Protein Homology	CDS	152779	153074	.	+	0	ID=cds149;Parent=gene153;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	153126	153830	.	+	.	ID=gene154;Name=RAF_RS00780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00780;old_locus_tag=RAF_ORF0140
NC_012633.1	Protein Homology	CDS	153126	153830	.	+	0	ID=cds150;Parent=gene154;Dbxref=Genbank:WP_004996686.1;Name=WP_004996686.1;gbkey=CDS;product=tRNA (guanine-N(1)-)-methyltransferase;protein_id=WP_004996686.1;transl_table=11
NC_012633.1	RefSeq	gene	153848	154264	.	+	.	ID=gene155;Name=RAF_RS00785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00785;old_locus_tag=RAF_ORF0141
NC_012633.1	Protein Homology	CDS	153848	154264	.	+	0	ID=cds151;Parent=gene155;Dbxref=Genbank:WP_012719393.1;Name=WP_012719393.1;gbkey=CDS;product=50S ribosomal protein L19;protein_id=WP_012719393.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	154352	154426	.	+	.	ID=id60;Note=RAF_REPEAT052_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	154434	154670	.	-	.	ID=gene156;Name=RAF_RS00790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00790;old_locus_tag=RAF_ORF0142
NC_012633.1	Protein Homology	CDS	154434	154670	.	-	0	ID=cds152;Parent=gene156;Dbxref=Genbank:WP_004996682.1;Name=WP_004996682.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004996682.1;transl_table=11
NC_012633.1	RefSeq	gene	154743	155669	.	+	.	ID=gene157;Name=RAF_RS00795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00795;old_locus_tag=RAF_ORF0143
NC_012633.1	Protein Homology	CDS	154743	155669	.	+	0	ID=cds153;Parent=gene157;Dbxref=Genbank:WP_012719394.1;Name=WP_012719394.1;gbkey=CDS;product=protein translocase subunit SecF;protein_id=WP_012719394.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	155740	155806	.	+	.	ID=id61;Note=RAF_REPEAT053_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	155834	157099	.	+	.	ID=gene158;Name=RAF_RS00800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00800;old_locus_tag=RAF_ORF0144
NC_012633.1	Protein Homology	CDS	155834	157099	.	+	0	ID=cds154;Parent=gene158;Dbxref=Genbank:WP_012719395.1;Name=WP_012719395.1;Note=part of NADH-ubiquinone oxidoreductase complex I%3B shuttles electrons from NADH%2C via FMN and iron-sulfur (Fe-S) centers%2C to quinones in the respiratory chain%3B NuoF is part of the soluble NADH dehydrogenase fragment%2C which represents the electron input part of NADH dehydrogenase;gbkey=CDS;product=NADH-quinone oxidoreductase subunit F;protein_id=WP_012719395.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	157179	157253	.	+	.	ID=id62;Note=RAF_REPEAT054_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	157283	158083	.	+	.	ID=gene159;Name=RAF_RS00805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00805;old_locus_tag=RAF_ORF0145
NC_012633.1	Protein Homology	CDS	157283	158083	.	+	0	ID=cds155;Parent=gene159;Dbxref=Genbank:WP_012719396.1;Name=WP_012719396.1;gbkey=CDS;product=signal peptidase I;protein_id=WP_012719396.1;transl_table=11
NC_012633.1	RefSeq	gene	158083	158766	.	+	.	ID=gene160;Name=RAF_RS00810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00810;old_locus_tag=RAF_ORF0146
NC_012633.1	Protein Homology	CDS	158083	158766	.	+	0	ID=cds156;Parent=gene160;Dbxref=Genbank:WP_004996667.1;Name=WP_004996667.1;gbkey=CDS;product=ribonuclease 3;protein_id=WP_004996667.1;transl_table=11
NC_012633.1	RefSeq	gene	158759	159778	.	+	.	ID=gene161;Name=era;gbkey=Gene;gene=era;gene_biotype=protein_coding;gene_synonym=bex,rbaA,sdgE,yqfH;locus_tag=RAF_RS00815;old_locus_tag=RAF_ORF0147
NC_012633.1	Protein Homology	CDS	158759	159778	.	+	0	ID=cds157;Parent=gene161;Dbxref=Genbank:WP_012719397.1;Name=WP_012719397.1;Note=Era%3B Escherichia coli Ras-like protein%3B Bex%3B Bacillus Era-complementing segment%3B essential protein in Escherichia coli that is involved in many cellular processes%3B GTPase%3B binds the cell membrane through apparent C-terminal domain%3B mutants are arrested during the cell cycle%3B Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome;gbkey=CDS;gene=era;product=GTPase Era;protein_id=WP_012719397.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	158768	158902	.	+	.	ID=id63;Note=RAF_REPEAT055_RPE-1%2C RPE-1 Full;gbkey=repeat_region;gene=era
NC_012633.1	RefSeq	repeat_region	159823	159892	.	+	.	ID=id64;Note=RAF_REPEAT056_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	159895	160368	.	+	.	ID=gene162;Name=RAF_RS00820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00820;old_locus_tag=RAF_ORF0148
NC_012633.1	Protein Homology	CDS	159895	160368	.	+	0	ID=cds158;Parent=gene162;Dbxref=Genbank:WP_012719398.1;Name=WP_012719398.1;gbkey=CDS;product=crossover junction endodeoxyribonuclease RuvC;protein_id=WP_012719398.1;transl_table=11
NC_012633.1	RefSeq	gene	160370	161062	.	+	.	ID=gene163;Name=RAF_RS00825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00825;old_locus_tag=RAF_ORF0149
NC_012633.1	Protein Homology	CDS	160370	161062	.	+	0	ID=cds159;Parent=gene163;Dbxref=Genbank:WP_012719399.1;Name=WP_012719399.1;gbkey=CDS;product=RNA methyltransferase;protein_id=WP_012719399.1;transl_table=11
NC_012633.1	RefSeq	gene	161043	161432	.	-	.	ID=gene164;Name=RAF_RS00830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00830
NC_012633.1	Protein Homology	CDS	161043	161432	.	-	0	ID=cds160;Parent=gene164;Dbxref=Genbank:WP_041471993.1;Name=WP_041471993.1;gbkey=CDS;product=nucleotidyltransferase;protein_id=WP_041471993.1;transl_table=11
NC_012633.1	RefSeq	gene	161343	161576	.	-	.	ID=gene165;Name=RAF_RS00835;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS00835;partial=true;pseudo=true;start_range=.,161343
NC_012633.1	Protein Homology	CDS	161343	161576	.	-	0	ID=cds161;Parent=gene165;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=nucleotidyltransferase;pseudo=true;start_range=.,161343;transl_table=11
NC_012633.1	RefSeq	gene	161708	162754	.	-	.	ID=gene166;Name=RAF_RS00840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00840;old_locus_tag=RAF_ORF0151
NC_012633.1	Protein Homology	CDS	161708	162754	.	-	0	ID=cds162;Parent=gene166;Dbxref=Genbank:WP_012719401.1;Name=WP_012719401.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719401.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	162317	162381	.	-	.	ID=id65;Note=RAF_REPEAT057_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	162751	163710	.	-	.	ID=gene167;Name=RAF_RS00845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00845;old_locus_tag=RAF_ORF0152
NC_012633.1	Protein Homology	CDS	162751	163710	.	-	0	ID=cds163;Parent=gene167;Dbxref=Genbank:WP_012719402.1;Name=WP_012719402.1;gbkey=CDS;product=sodium:proton antiporter;protein_id=WP_012719402.1;transl_table=11
NC_012633.1	RefSeq	gene	163815	164855	.	+	.	ID=gene168;Name=RAF_RS00850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00850;old_locus_tag=RAF_ORF0153
NC_012633.1	Protein Homology	CDS	163815	164855	.	+	0	ID=cds164;Parent=gene168;Dbxref=Genbank:WP_012719403.1;Name=WP_012719403.1;gbkey=CDS;product=membrane protein;protein_id=WP_012719403.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	164868	164892	.	+	.	ID=id66;Note=RAF_REPEAT058_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	164948	165808	.	+	.	ID=gene169;Name=RAF_RS00855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00855;old_locus_tag=RAF_ORF0154
NC_012633.1	Protein Homology	CDS	164948	165808	.	+	0	ID=cds165;Parent=gene169;Dbxref=Genbank:WP_012719404.1;Name=WP_012719404.1;gbkey=CDS;product=membrane protein;protein_id=WP_012719404.1;transl_table=11
NC_012633.1	RefSeq	gene	165846	167324	.	+	.	ID=gene170;Name=RAF_RS00860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00860;old_locus_tag=RAF_ORF0155
NC_012633.1	Protein Homology	CDS	165846	167324	.	+	0	ID=cds166;Parent=gene170;Dbxref=Genbank:WP_012719405.1;Name=WP_012719405.1;gbkey=CDS;product=serine peptidase;protein_id=WP_012719405.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	167331	167467	.	+	.	ID=id67;Note=RAF_REPEAT059_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	167501	168244	.	+	.	ID=gene171;Name=RAF_RS00865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00865;old_locus_tag=RAF_ORF0156
NC_012633.1	Protein Homology	CDS	167501	168244	.	+	0	ID=cds167;Parent=gene171;Dbxref=Genbank:WP_012719406.1;Name=WP_012719406.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719406.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	168273	168383	.	-	.	ID=id68;Note=RAF_REPEAT060_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	168411	168785	.	+	.	ID=gene172;Name=RAF_RS00870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00870;old_locus_tag=RAF_ORF0157
NC_012633.1	Protein Homology	CDS	168411	168785	.	+	0	ID=cds168;Parent=gene172;Dbxref=Genbank:WP_010976843.1;Name=WP_010976843.1;gbkey=CDS;product=succinate dehydrogenase cytochrome b556 subunit;protein_id=WP_010976843.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	168825	168898	.	+	.	ID=id69;Note=RAF_REPEAT061_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	168930	169310	.	+	.	ID=gene173;Name=RAF_RS00875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00875;old_locus_tag=RAF_ORF0158
NC_012633.1	Protein Homology	CDS	168930	169310	.	+	0	ID=cds169;Parent=gene173;Dbxref=Genbank:WP_012719407.1;Name=WP_012719407.1;gbkey=CDS;product=succinate dehydrogenase;protein_id=WP_012719407.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	169315	169401	.	+	.	ID=id70;Note=RAF_REPEAT062_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	169444	171234	.	+	.	ID=gene174;Name=RAF_RS00880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00880;old_locus_tag=RAF_ORF0159
NC_012633.1	Protein Homology	CDS	169444	171234	.	+	0	ID=cds170;Parent=gene174;Dbxref=Genbank:WP_012719408.1;Name=WP_012719408.1;Note=part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration%3B FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit%2C respectively%3B FrdCD are the membrane components which interact with quinone and are involved in electron transfer%3B the catalytic subunits are similar to succinate dehydrogenase SdhAB;gbkey=CDS;product=succinate dehydrogenase flavoprotein subunit;protein_id=WP_012719408.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	171246	171277	.	-	.	ID=id71;Note=RAF_REPEAT063_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	171285	171360	.	+	.	ID=id72;Note=RAF_REPEAT064_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	171382	172038	.	+	.	ID=gene175;Name=RAF_RS00885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00885;old_locus_tag=RAF_ORF0160
NC_012633.1	Protein Homology	CDS	171382	172038	.	+	0	ID=cds171;Parent=gene175;Dbxref=Genbank:WP_004996648.1;Name=WP_004996648.1;gbkey=CDS;product=arginine ABC transporter permease;protein_id=WP_004996648.1;transl_table=11
NC_012633.1	RefSeq	gene	172199	172588	.	+	.	ID=gene176;Name=RAF_RS00890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00890;old_locus_tag=RAF_ORF0161
NC_012633.1	Protein Homology	CDS	172199	172588	.	+	0	ID=cds172;Parent=gene176;Dbxref=Genbank:WP_004996647.1;Name=WP_004996647.1;gbkey=CDS;product=30S ribosomal protein S12;protein_id=WP_004996647.1;transl_table=11
NC_012633.1	RefSeq	gene	172615	173097	.	+	.	ID=gene177;Name=RAF_RS00895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00895;old_locus_tag=RAF_ORF0162
NC_012633.1	Protein Homology	CDS	172615	173097	.	+	0	ID=cds173;Parent=gene177;Dbxref=Genbank:WP_004996646.1;Name=WP_004996646.1;gbkey=CDS;product=30S ribosomal protein S7;protein_id=WP_004996646.1;transl_table=11
NC_012633.1	RefSeq	gene	173109	175208	.	+	.	ID=gene178;Name=fusA;gbkey=Gene;gene=fusA;gene_biotype=protein_coding;locus_tag=RAF_RS00900;old_locus_tag=RAF_ORF0163
NC_012633.1	Protein Homology	CDS	173109	175208	.	+	0	ID=cds174;Parent=gene178;Dbxref=Genbank:WP_012719409.1;Name=WP_012719409.1;Note=EF-G%3B promotes GTP-dependent translocation of the ribosome during translation%3B many organisms have multiple copies of this gene;gbkey=CDS;gene=fusA;product=elongation factor G;protein_id=WP_012719409.1;transl_table=11
NC_012633.1	RefSeq	gene	175356	175431	.	+	.	ID=gene179;Name=RAF_RS00905;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS00905;old_locus_tag=RAF_RNA05
NC_012633.1	tRNAscan-SE	tRNA	175356	175431	.	+	.	ID=rna4;Parent=gene179;anticodon=(pos:175389..175391);gbkey=tRNA;product=tRNA-Trp
NC_012633.1	tRNAscan-SE	exon	175356	175431	.	+	.	ID=id73;Parent=rna4;anticodon=(pos:175389..175391);gbkey=tRNA;product=tRNA-Trp
NC_012633.1	RefSeq	repeat_region	175465	175606	.	+	.	ID=id74;Note=RAF_REPEAT065_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	175628	175828	.	+	.	ID=gene180;Name=RAF_RS00910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00910;old_locus_tag=RAF_ORF0164
NC_012633.1	Protein Homology	CDS	175628	175828	.	+	0	ID=cds175;Parent=gene180;Dbxref=Genbank:WP_004996644.1;Name=WP_004996644.1;gbkey=CDS;product=protein translocase subunit SecE;protein_id=WP_004996644.1;transl_table=11
NC_012633.1	RefSeq	gene	175844	176422	.	+	.	ID=gene181;Name=RAF_RS00915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00915;old_locus_tag=RAF_ORF0165
NC_012633.1	Protein Homology	CDS	175844	176422	.	+	0	ID=cds176;Parent=gene181;Dbxref=Genbank:WP_012719410.1;Name=WP_012719410.1;gbkey=CDS;product=transcription termination/antitermination factor NusG;protein_id=WP_012719410.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	176530	176625	.	+	.	ID=id75;Note=RAF_REPEAT066_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	176694	177131	.	+	.	ID=gene182;Name=RAF_RS00920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00920;old_locus_tag=RAF_ORF0166
NC_012633.1	Protein Homology	CDS	176694	177131	.	+	0	ID=cds177;Parent=gene182;Dbxref=Genbank:WP_004996639.1;Name=WP_004996639.1;gbkey=CDS;product=50S ribosomal protein L11;protein_id=WP_004996639.1;transl_table=11
NC_012633.1	RefSeq	gene	177137	177856	.	+	.	ID=gene183;Name=RAF_RS00925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00925;old_locus_tag=RAF_ORF0167
NC_012633.1	Protein Homology	CDS	177137	177856	.	+	0	ID=cds178;Parent=gene183;Dbxref=Genbank:WP_004996637.1;Name=WP_004996637.1;gbkey=CDS;product=50S ribosomal protein L1;protein_id=WP_004996637.1;transl_table=11
NC_012633.1	RefSeq	gene	177967	178476	.	+	.	ID=gene184;Name=RAF_RS00930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00930;old_locus_tag=RAF_ORF0168
NC_012633.1	Protein Homology	CDS	177967	178476	.	+	0	ID=cds179;Parent=gene184;Dbxref=Genbank:WP_004996634.1;Name=WP_004996634.1;gbkey=CDS;product=50S ribosomal protein L10;protein_id=WP_004996634.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	178478	178609	.	-	.	ID=id76;Note=RAF_REPEAT067_RPE-8%2C RPE-8 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	178676	179053	.	+	.	ID=gene185;Name=RAF_RS00935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00935;old_locus_tag=RAF_ORF0169
NC_012633.1	Protein Homology	CDS	178676	179053	.	+	0	ID=cds180;Parent=gene185;Dbxref=Genbank:WP_012719411.1;Name=WP_012719411.1;gbkey=CDS;product=50S ribosomal protein L7/L12;protein_id=WP_012719411.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	179065	179199	.	-	.	ID=id77;Note=RAF_REPEAT068_RPE-8%2C RPE-8 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	179460	179578	.	-	.	ID=id78;Note=RAF_REPEAT069_RPE-8%2C RPE-8 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	179786	179922	.	-	.	ID=id79;Note=RAF_REPEAT070_RPE-8%2C RPE-8 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	179998	184119	.	+	.	ID=gene186;Name=RAF_RS00940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00940;old_locus_tag=RAF_ORF0170
NC_012633.1	Protein Homology	CDS	179998	184119	.	+	0	ID=cds181;Parent=gene186;Dbxref=Genbank:WP_012719412.1;Name=WP_012719412.1;gbkey=CDS;product=DNA-directed RNA polymerase subunit beta;protein_id=WP_012719412.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	184083	184198	.	+	.	ID=id80;Note=RAF_REPEAT071_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	184223	184347	.	+	.	ID=id81;Note=RAF_REPEAT072_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	184377	188495	.	+	.	ID=gene187;Name=RAF_RS00945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00945;old_locus_tag=RAF_ORF0171
NC_012633.1	Protein Homology	CDS	184377	188495	.	+	0	ID=cds182;Parent=gene187;Dbxref=Genbank:WP_012719413.1;Name=WP_012719413.1;gbkey=CDS;product=DNA-directed RNA polymerase subunit beta';protein_id=WP_012719413.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	188498	188624	.	-	.	ID=id82;Note=RAF_REPEAT073_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	188676	188752	.	+	.	ID=id83;Note=RAF_REPEAT074_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	188773	188900	.	+	.	ID=id84;Note=RAF_REPEAT075_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	188902	190071	.	-	.	ID=gene188;Name=RAF_RS00950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00950;old_locus_tag=RAF_ORF0172
NC_012633.1	Protein Homology	CDS	188902	190071	.	-	0	ID=cds183;Parent=gene188;Dbxref=Genbank:WP_012719414.1;Name=WP_012719414.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_012719414.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	189223	189366	.	-	.	ID=id85;Note=RAF_REPEAT076_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	190240	191742	.	+	.	ID=gene189;Name=RAF_RS00955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00955;old_locus_tag=RAF_ORF0173
NC_012633.1	Protein Homology	CDS	190240	191742	.	+	0	ID=cds184;Parent=gene189;Dbxref=Genbank:WP_010976854.1;Name=WP_010976854.1;gbkey=CDS;product=cytosol aminopeptidase;protein_id=WP_010976854.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	191808	191874	.	+	.	ID=id86;Note=RAF_REPEAT077_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	191961	192761	.	+	.	ID=gene190;Name=RAF_RS00960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00960;old_locus_tag=RAF_ORF0174
NC_012633.1	Protein Homology	CDS	191961	192761	.	+	0	ID=cds185;Parent=gene190;Dbxref=Genbank:WP_004996620.1;Name=WP_004996620.1;gbkey=CDS;product=ATPase;protein_id=WP_004996620.1;transl_table=11
NC_012633.1	RefSeq	gene	192844	193278	.	+	.	ID=gene191;Name=RAF_RS00965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00965;old_locus_tag=RAF_ORF0175
NC_012633.1	Protein Homology	CDS	192844	193278	.	+	0	ID=cds186;Parent=gene191;Dbxref=Genbank:WP_004996619.1;Name=WP_004996619.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004996619.1;transl_table=11
NC_012633.1	RefSeq	gene	193369	195177	.	+	.	ID=gene192;Name=RAF_RS00970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00970;old_locus_tag=RAF_ORF0176
NC_012633.1	Protein Homology	CDS	193369	195177	.	+	0	ID=cds187;Parent=gene192;Dbxref=Genbank:WP_012719415.1;Name=WP_012719415.1;gbkey=CDS;product=aspartate--tRNA(Asp/Asn) ligase;protein_id=WP_012719415.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	195270	195350	.	-	.	ID=id87;Note=RAF_REPEAT078_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	195455	197569	.	-	.	ID=gene193;Name=RAF_RS00975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00975;old_locus_tag=RAF_ORF0177
NC_012633.1	Protein Homology	CDS	195455	197569	.	-	0	ID=cds188;Parent=gene193;Dbxref=Genbank:WP_012719416.1;Name=WP_012719416.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719416.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	197633	197726	.	-	.	ID=id88;Note=RAF_REPEAT079_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	197953	198663	.	-	.	ID=gene194;Name=RAF_RS00980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00980;old_locus_tag=RAF_ORF0178
NC_012633.1	Protein Homology	CDS	197953	198663	.	-	0	ID=cds189;Parent=gene194;Dbxref=Genbank:WP_012719417.1;Name=WP_012719417.1;gbkey=CDS;product=membrane protein;protein_id=WP_012719417.1;transl_table=11
NC_012633.1	RefSeq	gene	198737	199456	.	-	.	ID=gene195;Name=RAF_RS00985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00985;old_locus_tag=RAF_ORF0179
NC_012633.1	Protein Homology	CDS	198737	199456	.	-	0	ID=cds190;Parent=gene195;Dbxref=Genbank:WP_012719418.1;Name=WP_012719418.1;gbkey=CDS;product=4-hydroxy-tetrahydrodipicolinate reductase;protein_id=WP_012719418.1;transl_table=11
NC_012633.1	RefSeq	gene	199478	199957	.	-	.	ID=gene196;Name=RAF_RS00990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00990;old_locus_tag=RAF_ORF0180
NC_012633.1	Protein Homology	CDS	199478	199957	.	-	0	ID=cds191;Parent=gene196;Dbxref=Genbank:WP_010976860.1;Name=WP_010976860.1;gbkey=CDS;product=FMN reductase;protein_id=WP_010976860.1;transl_table=11
NC_012633.1	RefSeq	gene	199942	200667	.	-	.	ID=gene197;Name=RAF_RS00995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS00995;old_locus_tag=RAF_ORF0181
NC_012633.1	Protein Homology	CDS	199942	200667	.	-	0	ID=cds192;Parent=gene197;Dbxref=Genbank:WP_010976861.1;Name=WP_010976861.1;gbkey=CDS;product=amino acid ABC transporter substrate-binding protein;protein_id=WP_010976861.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	200744	200810	.	-	.	ID=id89;Note=RAF_REPEAT080_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	200878	202329	.	-	.	ID=gene198;Name=gatB;gbkey=Gene;gene=gatB;gene_biotype=protein_coding;locus_tag=RAF_RS01000;old_locus_tag=RAF_ORF0182
NC_012633.1	Protein Homology	CDS	200878	202329	.	-	0	ID=cds193;Parent=gene198;Dbxref=Genbank:WP_012719419.1;Name=WP_012719419.1;Note=allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases%3B reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA;gbkey=CDS;gene=gatB;product=aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B;protein_id=WP_012719419.1;transl_table=11
NC_012633.1	RefSeq	gene	202332	203813	.	-	.	ID=gene199;Name=gatA;gbkey=Gene;gene=gatA;gene_biotype=protein_coding;locus_tag=RAF_RS01005;old_locus_tag=RAF_ORF0183
NC_012633.1	Protein Homology	CDS	202332	203813	.	-	0	ID=cds194;Parent=gene199;Dbxref=Genbank:WP_012719420.1;Name=WP_012719420.1;Note=allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases%3B reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA;gbkey=CDS;gene=gatA;product=glutamyl-tRNA(Gln) amidotransferase subunit A;protein_id=WP_012719420.1;transl_table=11
NC_012633.1	RefSeq	gene	203816	204118	.	-	.	ID=gene200;Name=RAF_RS01010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01010;old_locus_tag=RAF_ORF0184
NC_012633.1	Protein Homology	CDS	203816	204118	.	-	0	ID=cds195;Parent=gene200;Dbxref=Genbank:WP_012719421.1;Name=WP_012719421.1;gbkey=CDS;product=aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C;protein_id=WP_012719421.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	204721	204815	.	+	.	ID=id90;Note=RAF_REPEAT081_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	204908	205468	.	-	.	ID=gene201;Name=RAF_RS01015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01015;old_locus_tag=RAF_ORF0186
NC_012633.1	Protein Homology	CDS	204908	205468	.	-	0	ID=cds196;Parent=gene201;Dbxref=Genbank:WP_012719423.1;Name=WP_012719423.1;gbkey=CDS;product=ribosome-recycling factor;protein_id=WP_012719423.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	205566	205659	.	-	.	ID=id91;Note=RAF_REPEAT082_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	205757	206485	.	-	.	ID=gene202;Name=pyrH;gbkey=Gene;gene=pyrH;gene_biotype=protein_coding;locus_tag=RAF_RS01020;old_locus_tag=RAF_ORF0187
NC_012633.1	Protein Homology	CDS	205757	206485	.	-	0	ID=cds197;Parent=gene202;Dbxref=Genbank:WP_012719424.1;Name=WP_012719424.1;Note=Catalyzes the phosphorylation of UMP to UDP;gbkey=CDS;gene=pyrH;product=uridylate kinase;protein_id=WP_012719424.1;transl_table=11
NC_012633.1	RefSeq	gene	206494	206817	.	-	.	ID=gene203;Name=RAF_RS01025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01025;old_locus_tag=RAF_ORF0188
NC_012633.1	Protein Homology	CDS	206494	206817	.	-	0	ID=cds198;Parent=gene203;Dbxref=Genbank:WP_004996606.1;Name=WP_004996606.1;Note=subunit E of antiporter complex involved in resistance to high concentrations of Na+%2C K+%2C Li+ and/or alkali;gbkey=CDS;product=cation:proton antiporter;protein_id=WP_004996606.1;transl_table=11
NC_012633.1	RefSeq	gene	206801	208360	.	-	.	ID=gene204;Name=RAF_RS01030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01030;old_locus_tag=RAF_ORF0189
NC_012633.1	Protein Homology	CDS	206801	208360	.	-	0	ID=cds199;Parent=gene204;Dbxref=Genbank:WP_012719425.1;Name=WP_012719425.1;gbkey=CDS;product=MFS transporter;protein_id=WP_012719425.1;transl_table=11
NC_012633.1	RefSeq	gene	208592	208795	.	+	.	ID=gene205;Name=RAF_RS01035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01035;old_locus_tag=RAF_ORF0190
NC_012633.1	Protein Homology	CDS	208592	208795	.	+	0	ID=cds200;Parent=gene205;Dbxref=Genbank:WP_004996604.1;Name=WP_004996604.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004996604.1;transl_table=11
NC_012633.1	RefSeq	gene	209171	209356	.	-	.	ID=gene206;Name=RAF_RS01040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01040
NC_012633.1	Protein Homology	CDS	209171	209356	.	-	0	ID=cds201;Parent=gene206;Dbxref=Genbank:WP_041471800.1;Name=WP_041471800.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471800.1;transl_table=11
NC_012633.1	RefSeq	gene	209421	210008	.	-	.	ID=gene207;Name=RAF_RS01045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01045;old_locus_tag=RAF_ORF0192
NC_012633.1	Protein Homology	CDS	209421	210008	.	-	0	ID=cds202;Parent=gene207;Dbxref=Genbank:WP_012719427.1;Name=WP_012719427.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719427.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	210290	210376	.	+	.	ID=id92;Note=RAF_REPEAT083_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	210458	210533	.	-	.	ID=gene208;Name=RAF_RS01050;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS01050;old_locus_tag=RAF_RNA06
NC_012633.1	tRNAscan-SE	tRNA	210458	210533	.	-	.	ID=rna5;Parent=gene208;anticodon=(pos:complement(210498..210500));gbkey=tRNA;product=tRNA-Thr
NC_012633.1	tRNAscan-SE	exon	210458	210533	.	-	.	ID=id93;Parent=rna5;anticodon=(pos:complement(210498..210500));gbkey=tRNA;product=tRNA-Thr
NC_012633.1	RefSeq	repeat_region	210600	210694	.	-	.	ID=id94;Note=RAF_REPEAT084_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	210706	213012	.	-	.	ID=gene209;Name=RAF_RS01055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01055;old_locus_tag=RAF_ORF0193
NC_012633.1	Protein Homology	CDS	210706	213012	.	-	0	ID=cds203;Parent=gene209;Dbxref=Genbank:WP_012719428.1;Name=WP_012719428.1;gbkey=CDS;product=membrane protein;protein_id=WP_012719428.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	213060	213128	.	-	.	ID=id95;Note=RAF_REPEAT085_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	213251	214324	.	-	.	ID=gene210;Name=RAF_RS01060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01060;old_locus_tag=RAF_ORF0194
NC_012633.1	Protein Homology	CDS	213251	214324	.	-	0	ID=cds204;Parent=gene210;Dbxref=Genbank:WP_012719429.1;Name=WP_012719429.1;gbkey=CDS;product=zinc metalloprotease;protein_id=WP_012719429.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	214426	214550	.	+	.	ID=id96;Note=RAF_REPEAT086_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	214606	215076	.	+	.	ID=gene211;Name=RAF_RS01065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01065;old_locus_tag=RAF_ORF0195
NC_012633.1	Protein Homology	CDS	214606	215076	.	+	0	ID=cds205;Parent=gene211;Dbxref=Genbank:WP_004996600.1;Name=WP_004996600.1;gbkey=CDS;product=N utilization substance protein B homolog;protein_id=WP_004996600.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	215060	215174	.	-	.	ID=id97;Note=RAF_REPEAT087_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	215211	215894	.	+	.	ID=gene212;Name=RAF_RS01070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01070;old_locus_tag=RAF_ORF0196
NC_012633.1	Protein Homology	CDS	215211	215894	.	+	0	ID=cds206;Parent=gene212;Dbxref=Genbank:WP_012719430.1;Name=WP_012719430.1;gbkey=CDS;product=ribosomal RNA large subunit methyltransferase E;protein_id=WP_012719430.1;transl_table=11
NC_012633.1	RefSeq	gene	215945	217006	.	-	.	ID=gene213;Name=RAF_RS01075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01075;old_locus_tag=RAF_ORF0197
NC_012633.1	Protein Homology	CDS	215945	217006	.	-	0	ID=cds207;Parent=gene213;Dbxref=Genbank:WP_012719431.1;Name=WP_012719431.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719431.1;transl_table=11
NC_012633.1	RefSeq	gene	217171	218124	.	+	.	ID=gene214;Name=RAF_RS01080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01080;old_locus_tag=RAF_ORF0198
NC_012633.1	Protein Homology	CDS	217171	218124	.	+	0	ID=cds208;Parent=gene214;Dbxref=Genbank:WP_012719432.1;Name=WP_012719432.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719432.1;transl_table=11
NC_012633.1	RefSeq	gene	218183	218623	.	-	.	ID=gene215;Name=RAF_RS01085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01085;old_locus_tag=RAF_ORF0199
NC_012633.1	Protein Homology	CDS	218183	218623	.	-	0	ID=cds209;Parent=gene215;Dbxref=Genbank:WP_012719433.1;Name=WP_012719433.1;gbkey=CDS;product=ribosome association toxin RatA;protein_id=WP_012719433.1;transl_table=11
NC_012633.1	RefSeq	gene	218623	218904	.	-	.	ID=gene216;Name=RAF_RS01090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01090;old_locus_tag=RAF_ORF0200
NC_012633.1	Protein Homology	CDS	218623	218904	.	-	0	ID=cds210;Parent=gene216;Dbxref=Genbank:WP_004996593.1;Name=WP_004996593.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004996593.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	218740	218883	.	-	.	ID=id98;Note=RAF_REPEAT088_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	218917	219657	.	+	.	ID=gene217;Name=RAF_RS01095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01095;old_locus_tag=RAF_ORF0201
NC_012633.1	Protein Homology	CDS	218917	219657	.	+	0	ID=cds211;Parent=gene217;Dbxref=Genbank:WP_012719434.1;Name=WP_012719434.1;gbkey=CDS;product=16S rRNA methyltransferase;protein_id=WP_012719434.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	219628	219728	.	+	.	ID=id99;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	219628	219702	.	-	.	ID=id100;Note=RAF_REPEAT089_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	219739	219975	.	-	.	ID=gene218;Name=RAF_RS01100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01100;old_locus_tag=RAF_ORF0202
NC_012633.1	Protein Homology	CDS	219739	219975	.	-	0	ID=cds212;Parent=gene218;Dbxref=Genbank:WP_012150427.1;Name=WP_012150427.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012150427.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	220030	220132	.	+	.	ID=id101;Note=RAF_REPEAT090_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	220230	223256	.	-	.	ID=gene219;Name=RAF_RS01105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01105;old_locus_tag=RAF_ORF0203
NC_012633.1	Protein Homology	CDS	220230	223256	.	-	0	ID=cds213;Parent=gene219;Dbxref=Genbank:WP_012719435.1;Name=WP_012719435.1;gbkey=CDS;product=hydrogenase expression protein HypA;protein_id=WP_012719435.1;transl_table=11
NC_012633.1	RefSeq	gene	223732	224064	.	+	.	ID=gene220;Name=RAF_RS01110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01110
NC_012633.1	Protein Homology	CDS	223732	224064	.	+	0	ID=cds214;Parent=gene220;Dbxref=Genbank:WP_041471801.1;Name=WP_041471801.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_041471801.1;transl_table=11
NC_012633.1	RefSeq	gene	224219	225013	.	+	.	ID=gene221;Name=RAF_RS01115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01115;old_locus_tag=RAF_ORF0205
NC_012633.1	Protein Homology	CDS	224219	225013	.	+	0	ID=cds215;Parent=gene221;Dbxref=Genbank:WP_012719437.1;Name=WP_012719437.1;Note=catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand%3B the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA;gbkey=CDS;product=DNA polymerase III subunit delta';protein_id=WP_012719437.1;transl_table=11
NC_012633.1	RefSeq	gene	225220	226569	.	+	.	ID=gene222;Name=RAF_RS01120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01120;old_locus_tag=RAF_ORF0206
NC_012633.1	Protein Homology	CDS	225220	226569	.	+	0	ID=cds216;Parent=gene222;Dbxref=Genbank:WP_012719438.1;Name=WP_012719438.1;gbkey=CDS;product=signal recognition particle protein;protein_id=WP_012719438.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	226590	226724	.	-	.	ID=id102;Note=RAF_REPEAT091_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	226745	226827	.	+	.	ID=id103;Note=RAF_REPEAT092_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	226933	227082	.	-	.	ID=gene223;Name=RAF_RS01125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01125
NC_012633.1	Protein Homology	CDS	226933	227082	.	-	0	ID=cds217;Parent=gene223;Dbxref=Genbank:WP_014419707.1;Name=WP_014419707.1;gbkey=CDS;product=post-proline cleaving enzyme;protein_id=WP_014419707.1;transl_table=11
NC_012633.1	RefSeq	gene	227218	227572	.	-	.	ID=gene224;Name=RAF_RS01130;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS01130;pseudo=true
NC_012633.1	Protein Homology	CDS	227218	227572	.	-	0	ID=cds218;Parent=gene224;exception=annotated by transcript or proteomic data;gbkey=CDS;product=peptidase S9;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	227596	227862	.	-	.	ID=gene225;Name=RAF_RS01135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01135
NC_012633.1	Protein Homology	CDS	227596	227862	.	-	0	ID=cds219;Parent=gene225;Dbxref=Genbank:WP_026054939.1;Name=WP_026054939.1;gbkey=CDS;product=prolyl endopeptidase;protein_id=WP_026054939.1;transl_table=11
NC_012633.1	RefSeq	gene	228431	228577	.	-	.	ID=gene226;Name=RAF_RS01140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01140
NC_012633.1	Protein Homology	CDS	228431	228577	.	-	0	ID=cds220;Parent=gene226;Dbxref=Genbank:WP_041471802.1;Name=WP_041471802.1;gbkey=CDS;product=prolyl endopeptidase;protein_id=WP_041471802.1;transl_table=11
NC_012633.1	RefSeq	gene	228574	229134	.	-	.	ID=gene227;Name=RAF_RS01145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01145
NC_012633.1	Protein Homology	CDS	228574	229134	.	-	0	ID=cds221;Parent=gene227;Dbxref=Genbank:WP_041471803.1;Name=WP_041471803.1;gbkey=CDS;product=prolyl endopeptidase;protein_id=WP_041471803.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	229162	229296	.	-	.	ID=id104;Note=RAF_REPEAT093_RPE-8%2C RPE-8 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	229311	230513	.	+	.	ID=gene228;Name=RAF_RS01150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01150;old_locus_tag=RAF_ORF0212
NC_012633.1	Protein Homology	CDS	229311	230513	.	+	0	ID=cds222;Parent=gene228;Dbxref=Genbank:WP_012719439.1;Name=WP_012719439.1;Note=catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III;gbkey=CDS;product=coproporphyrinogen III oxidase;protein_id=WP_012719439.1;transl_table=11
NC_012633.1	RefSeq	gene	230735	231071	.	+	.	ID=gene229;Name=RAF_RS01155;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS01155;old_locus_tag=RAF_ORF0213;pseudo=true
NC_012633.1	Protein Homology	CDS	230735	231071	.	+	0	ID=cds223;Parent=gene229;exception=annotated by transcript or proteomic data;gbkey=CDS;product=ankyrin;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	231134	231268	.	+	.	ID=gene230;Name=RAF_RS01160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01160
NC_012633.1	Protein Homology	CDS	231134	231268	.	+	0	ID=cds224;Parent=gene230;Dbxref=Genbank:WP_041471804.1;Name=WP_041471804.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471804.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	231374	231470	.	-	.	ID=id105;Note=RAF_REPEAT094_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	231475	231660	.	-	.	ID=gene231;Name=RAF_RS01165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01165
NC_012633.1	Protein Homology	CDS	231475	231660	.	-	0	ID=cds225;Parent=gene231;Dbxref=Genbank:WP_041471805.1;Name=WP_041471805.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471805.1;transl_table=11
NC_012633.1	RefSeq	gene	231661	231861	.	-	.	ID=gene232;Name=RAF_RS01170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01170
NC_012633.1	Protein Homology	CDS	231661	231861	.	-	0	ID=cds226;Parent=gene232;Dbxref=Genbank:WP_049752723.1;Name=WP_049752723.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_049752723.1;transl_table=11
NC_012633.1	RefSeq	gene	232187	232372	.	-	.	ID=gene233;Name=RAF_RS01175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01175
NC_012633.1	Protein Homology	CDS	232187	232372	.	-	0	ID=cds227;Parent=gene233;Dbxref=Genbank:WP_014013930.1;Name=WP_014013930.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_014013930.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	232286	232347	.	+	.	ID=id106;Note=RAF_REPEAT095_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	232426	233625	.	-	.	ID=gene234;Name=RAF_RS01180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01180;old_locus_tag=RAF_ORF0215
NC_012633.1	Protein Homology	CDS	232426	233625	.	-	0	ID=cds228;Parent=gene234;Dbxref=Genbank:WP_012719442.1;Name=WP_012719442.1;gbkey=CDS;product=sodium:proton antiporter;protein_id=WP_012719442.1;transl_table=11
NC_012633.1	RefSeq	gene	233666	233980	.	-	.	ID=gene235;Name=RAF_RS01185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01185;old_locus_tag=RAF_ORF0216
NC_012633.1	Protein Homology	CDS	233666	233980	.	-	0	ID=cds229;Parent=gene235;Dbxref=Genbank:WP_012719443.1;Name=WP_012719443.1;gbkey=CDS;product=cation tolerance protein;protein_id=WP_012719443.1;transl_table=11
NC_012633.1	RefSeq	gene	233983	234399	.	-	.	ID=gene236;Name=RAF_RS01190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01190
NC_012633.1	Protein Homology	CDS	233983	234399	.	-	0	ID=cds230;Parent=gene236;Dbxref=Genbank:WP_029374620.1;Name=WP_029374620.1;gbkey=CDS;product=6-carboxy-5%2C6%2C7%2C8-tetrahydropterin synthase;protein_id=WP_029374620.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	234463	234538	.	-	.	ID=id107;Note=RAF_REPEAT096_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	234569	235756	.	-	.	ID=gene237;Name=RAF_RS01195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01195;old_locus_tag=RAF_ORF0218
NC_012633.1	Protein Homology	CDS	234569	235756	.	-	0	ID=cds231;Parent=gene237;Dbxref=Genbank:WP_012719445.1;Name=WP_012719445.1;gbkey=CDS;product=dihydrolipoamide succinyltransferase;protein_id=WP_012719445.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	235807	235872	.	-	.	ID=id108;Note=RAF_REPEAT097_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	235921	238707	.	-	.	ID=gene238;Name=sucA;gbkey=Gene;gene=sucA;gene_biotype=protein_coding;locus_tag=RAF_RS01200;old_locus_tag=RAF_ORF0219
NC_012633.1	Protein Homology	CDS	235921	238707	.	-	0	ID=cds232;Parent=gene238;Dbxref=Genbank:WP_012719446.1;Name=WP_012719446.1;Note=SucA%3B E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate%3B SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide;gbkey=CDS;gene=sucA;product=MFS transporter;protein_id=WP_012719446.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	238768	238833	.	+	.	ID=id109;Note=RAF_REPEAT098_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	238841	240331	.	-	.	ID=gene239;Name=RAF_RS01205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01205;old_locus_tag=RAF_ORF0220
NC_012633.1	Protein Homology	CDS	238841	240331	.	-	0	ID=cds233;Parent=gene239;Dbxref=Genbank:WP_012719447.1;Name=WP_012719447.1;gbkey=CDS;product=peptidase M32;protein_id=WP_012719447.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	240344	240484	.	-	.	ID=id110;Note=RAF_REPEAT099_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	240508	242145	.	-	.	ID=gene240;Name=RAF_RS01210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01210;old_locus_tag=RAF_ORF0221
NC_012633.1	Protein Homology	CDS	240508	242145	.	-	0	ID=cds234;Parent=gene240;Dbxref=Genbank:WP_012719448.1;Name=WP_012719448.1;gbkey=CDS;product=DNA repair protein RecN;protein_id=WP_012719448.1;transl_table=11
NC_012633.1	RefSeq	gene	242153	242908	.	-	.	ID=gene241;Name=RAF_RS01215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01215;old_locus_tag=RAF_ORF0222
NC_012633.1	Protein Homology	CDS	242153	242908	.	-	0	ID=cds235;Parent=gene241;Dbxref=Genbank:WP_012719449.1;Name=WP_012719449.1;gbkey=CDS;product=DNA uptake lipoprotein;protein_id=WP_012719449.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	242998	243128	.	+	.	ID=id111;Note=RAF_REPEAT100_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	243149	243277	.	-	.	ID=gene242;Name=RAF_RS01220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01220
NC_012633.1	Protein Homology	CDS	243149	243277	.	-	0	ID=cds236;Parent=gene242;Dbxref=Genbank:WP_004996545.1;Name=WP_004996545.1;gbkey=CDS;product=cation transport regulator ChaB;protein_id=WP_004996545.1;transl_table=11
NC_012633.1	RefSeq	gene	243447	244568	.	-	.	ID=gene243;Name=RAF_RS01225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01225;old_locus_tag=RAF_ORF0224
NC_012633.1	Protein Homology	CDS	243447	244568	.	-	0	ID=cds237;Parent=gene243;Dbxref=Genbank:WP_004996543.1;Name=WP_004996543.1;Note=chaperone Hsp40%3B co-chaperone with DnaK%3B Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins%2C also in an autonomous%2C dnaK-independent fashion;gbkey=CDS;product=molecular chaperone DnaJ;protein_id=WP_004996543.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	244597	244664	.	-	.	ID=id112;Note=RAF_REPEAT101_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	244697	246580	.	-	.	ID=gene244;Name=dnaK;gbkey=Gene;gene=dnaK;gene_biotype=protein_coding;locus_tag=RAF_RS01230;old_locus_tag=RAF_ORF0225
NC_012633.1	Protein Homology	CDS	244697	246580	.	-	0	ID=cds238;Parent=gene244;Dbxref=Genbank:WP_012719451.1;Name=WP_012719451.1;Note=heat shock protein 70%3B assists in folding of nascent polypeptide chains%3B refolding of misfolded proteins%3B utilizes ATPase activity to help fold%3B co-chaperones are DnaJ and GrpE%3B multiple copies in some bacteria;gbkey=CDS;gene=dnaK;product=molecular chaperone DnaK;protein_id=WP_012719451.1;transl_table=11
NC_012633.1	RefSeq	gene	246644	248137	.	+	.	ID=gene245;Name=RAF_RS01235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01235;old_locus_tag=RAF_ORF0226
NC_012633.1	Protein Homology	CDS	246644	248137	.	+	0	ID=cds239;Parent=gene245;Dbxref=Genbank:WP_012719452.1;Name=WP_012719452.1;gbkey=CDS;product=DNA polymerase III subunit delta;protein_id=WP_012719452.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	248391	248469	.	+	.	ID=id113;Note=RAF_REPEAT102_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	248863	249101	.	+	.	ID=gene246;Name=RAF_RS01240;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS01240;pseudo=true
NC_012633.1	Protein Homology	CDS	248863	249101	.	+	0	ID=cds240;Parent=gene246;exception=annotated by transcript or proteomic data;gbkey=CDS;product=ankyrin;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	249297	249644	.	-	.	ID=gene247;Name=RAF_RS01245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01245;old_locus_tag=RAF_ORF0227
NC_012633.1	Protein Homology	CDS	249297	249644	.	-	0	ID=cds241;Parent=gene247;Dbxref=Genbank:WP_012719453.1;Name=WP_012719453.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719453.1;transl_table=11
NC_012633.1	RefSeq	gene	249813	250286	.	+	.	ID=gene248;Name=RAF_RS01250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01250;old_locus_tag=RAF_ORF0228
NC_012633.1	Protein Homology	CDS	249813	250286	.	+	0	ID=cds242;Parent=gene248;Dbxref=Genbank:WP_012719454.1;Name=WP_012719454.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719454.1;transl_table=11
NC_012633.1	RefSeq	gene	250294	251268	.	+	.	ID=gene249;Name=RAF_RS01255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01255;old_locus_tag=RAF_ORF0229
NC_012633.1	Protein Homology	CDS	250294	251268	.	+	0	ID=cds243;Parent=gene249;Dbxref=Genbank:WP_012719455.1;Name=WP_012719455.1;gbkey=CDS;product=DNA polymerase III subunit delta;protein_id=WP_012719455.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	251273	251410	.	+	.	ID=id114;Note=RAF_REPEAT103_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	251416	251955	.	+	.	ID=gene250;Name=RAF_RS01260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01260;old_locus_tag=RAF_ORF0230
NC_012633.1	Protein Homology	CDS	251416	251955	.	+	0	ID=cds244;Parent=gene250;Dbxref=Genbank:WP_012719456.1;Name=WP_012719456.1;gbkey=CDS;product=ubiquinone biosynthesis protein UbiB;protein_id=WP_012719456.1;transl_table=11
NC_012633.1	RefSeq	gene	252506	253357	.	+	.	ID=gene251;Name=RAF_RS01265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01265;old_locus_tag=RAF_ORF0231
NC_012633.1	Protein Homology	CDS	252506	253357	.	+	0	ID=cds245;Parent=gene251;Dbxref=Genbank:WP_041471806.1;Name=WP_041471806.1;gbkey=CDS;product=cytochrome C oxidase subunit III;protein_id=WP_041471806.1;transl_table=11
NC_012633.1	RefSeq	gene	253513	253869	.	+	.	ID=gene252;Name=RAF_RS01270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01270;old_locus_tag=RAF_ORF0232
NC_012633.1	Protein Homology	CDS	253513	253869	.	+	0	ID=cds246;Parent=gene252;Dbxref=Genbank:WP_012719458.1;Name=WP_012719458.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719458.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	253961	254083	.	+	.	ID=id115;Note=RAF_REPEAT104_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	254123	254182	.	+	.	ID=id116;Note=RAF_REPEAT105_RPE-4%2C RPE-4 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	254213	254851	.	-	.	ID=gene253;Name=RAF_RS01275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01275;old_locus_tag=RAF_ORF0233
NC_012633.1	Protein Homology	CDS	254213	254851	.	-	0	ID=cds247;Parent=gene253;Dbxref=Genbank:WP_012719459.1;Name=WP_012719459.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719459.1;transl_table=11
NC_012633.1	RefSeq	gene	254927	255751	.	+	.	ID=gene254;Name=dapD;gbkey=Gene;gene=dapD;gene_biotype=protein_coding;locus_tag=RAF_RS01280;old_locus_tag=RAF_ORF0234
NC_012633.1	Protein Homology	CDS	254927	255751	.	+	0	ID=cds248;Parent=gene254;Dbxref=Genbank:WP_012719460.1;Name=WP_012719460.1;Note=catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway;gbkey=CDS;gene=dapD;product=2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-carboxylate N-succinyltransferase;protein_id=WP_012719460.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	255833	255925	.	-	.	ID=id117;Note=RAF_REPEAT106_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	256050	256352	.	-	.	ID=gene255;Name=RAF_RS01285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01285
NC_012633.1	Protein Homology	CDS	256050	256352	.	-	0	ID=cds249;Parent=gene255;Dbxref=Genbank:WP_041471997.1;Name=WP_041471997.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471997.1;transl_table=11
NC_012633.1	RefSeq	gene	257152	257421	.	-	.	ID=gene256;Name=RAF_RS01290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01290
NC_012633.1	Protein Homology	CDS	257152	257421	.	-	0	ID=cds250;Parent=gene256;Dbxref=Genbank:WP_041471807.1;Name=WP_041471807.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471807.1;transl_table=11
NC_012633.1	RefSeq	gene	257804	260194	.	-	.	ID=gene257;Name=RAF_RS01295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01295;old_locus_tag=RAF_ORF0237
NC_012633.1	Protein Homology	CDS	257804	260194	.	-	0	ID=cds251;Parent=gene257;Dbxref=Genbank:WP_041471808.1;Name=WP_041471808.1;gbkey=CDS;product=penicillin-binding protein 1C;protein_id=WP_041471808.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	258705	258805	.	-	.	ID=id118;Note=RAF_REPEAT107_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	260267	260332	.	-	.	ID=id119;Note=RAF_REPEAT108_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	260772	261203	.	+	.	ID=gene258;Name=RAF_RS01300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01300
NC_012633.1	Protein Homology	CDS	260772	261203	.	+	0	ID=cds252;Parent=gene258;Dbxref=Genbank:WP_041471809.1;Name=WP_041471809.1;gbkey=CDS;product=cell surface protein;protein_id=WP_041471809.1;transl_table=11
NC_012633.1	RefSeq	gene	261314	261517	.	+	.	ID=gene259;Name=RAF_RS01305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01305
NC_012633.1	Protein Homology	CDS	261314	261517	.	+	0	ID=cds253;Parent=gene259;Dbxref=Genbank:WP_004996507.1;Name=WP_004996507.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004996507.1;transl_table=11
NC_012633.1	RefSeq	gene	261524	261718	.	+	.	ID=gene260;Name=RAF_RS01310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01310
NC_012633.1	Protein Homology	CDS	261524	261718	.	+	0	ID=cds254;Parent=gene260;Dbxref=Genbank:WP_016926024.1;Name=WP_016926024.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_016926024.1;transl_table=11
NC_012633.1	RefSeq	gene	261806	262075	.	+	.	ID=gene261;Name=RAF_RS01315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01315
NC_012633.1	Protein Homology	CDS	261806	262075	.	+	0	ID=cds255;Parent=gene261;Dbxref=Genbank:WP_041471810.1;Name=WP_041471810.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471810.1;transl_table=11
NC_012633.1	RefSeq	gene	263063	263278	.	+	.	ID=gene262;Name=RAF_RS01320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01320
NC_012633.1	Protein Homology	CDS	263063	263278	.	+	0	ID=cds256;Parent=gene262;Dbxref=Genbank:WP_041471811.1;Name=WP_041471811.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471811.1;transl_table=11
NC_012633.1	RefSeq	gene	263560	263865	.	+	.	ID=gene263;Name=RAF_RS01325;end_range=263865,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS01325;partial=true;pseudo=true;start_range=.,263560
NC_012633.1	Protein Homology	CDS	263560	263865	.	+	0	ID=cds257;Parent=gene263;end_range=263865,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=cell surface protein;pseudo=true;start_range=.,263560;transl_table=11
NC_012633.1	RefSeq	gene	264043	264500	.	+	.	ID=gene264;Name=RAF_RS01330;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS01330;pseudo=true
NC_012633.1	Protein Homology	CDS	264043	264500	.	+	0	ID=cds258;Parent=gene264;exception=annotated by transcript or proteomic data;gbkey=CDS;product=cell surface protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	264572	264715	.	+	.	ID=gene265;Name=RAF_RS01335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01335
NC_012633.1	Protein Homology	CDS	264572	264715	.	+	0	ID=cds259;Parent=gene265;Dbxref=Genbank:WP_041471812.1;Name=WP_041471812.1;gbkey=CDS;product=cell surface protein;protein_id=WP_041471812.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	265032	265125	.	-	.	ID=id120;Note=RAF_REPEAT109_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	265202	265648	.	-	.	ID=gene266;Name=RAF_RS01340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01340;old_locus_tag=RAF_ORF0241
NC_012633.1	Protein Homology	CDS	265202	265648	.	-	0	ID=cds260;Parent=gene266;Dbxref=Genbank:WP_012719462.1;Name=WP_012719462.1;gbkey=CDS;product=universal stress protein UspA;protein_id=WP_012719462.1;transl_table=11
NC_012633.1	RefSeq	gene	265658	266599	.	-	.	ID=gene267;Name=RAF_RS01345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01345;old_locus_tag=RAF_ORF0242
NC_012633.1	Protein Homology	CDS	265658	266599	.	-	0	ID=cds261;Parent=gene267;Dbxref=Genbank:WP_012719463.1;Name=WP_012719463.1;gbkey=CDS;product=C4-dicarboxylate ABC transporter substrate-binding protein;protein_id=WP_012719463.1;transl_table=11
NC_012633.1	RefSeq	gene	266604	267674	.	-	.	ID=gene268;Name=RAF_RS01350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01350;old_locus_tag=RAF_ORF0243
NC_012633.1	Protein Homology	CDS	266604	267674	.	-	0	ID=cds262;Parent=gene268;Dbxref=Genbank:WP_012719464.1;Name=WP_012719464.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719464.1;transl_table=11
NC_012633.1	RefSeq	gene	267687	268025	.	-	.	ID=gene269;Name=RAF_RS01355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01355;old_locus_tag=RAF_ORF0244
NC_012633.1	Protein Homology	CDS	267687	268025	.	-	0	ID=cds263;Parent=gene269;Dbxref=Genbank:WP_004996492.1;Name=WP_004996492.1;gbkey=CDS;product=(2Fe-2S) ferredoxin;protein_id=WP_004996492.1;transl_table=11
NC_012633.1	RefSeq	gene	268089	269876	.	-	.	ID=gene270;Name=hscA;gbkey=Gene;gene=hscA;gene_biotype=protein_coding;locus_tag=RAF_RS01360;old_locus_tag=RAF_ORF0245
NC_012633.1	Protein Homology	CDS	268089	269876	.	-	0	ID=cds264;Parent=gene270;Dbxref=Genbank:WP_012719465.1;Name=WP_012719465.1;Note=involved in the maturation of iron-sulfur cluster-containing proteins;gbkey=CDS;gene=hscA;product=Chaperone protein HscA homolog;protein_id=WP_012719465.1;transl_table=11
NC_012633.1	RefSeq	gene	269867	270367	.	-	.	ID=gene271;Name=hscB;gbkey=Gene;gene=hscB;gene_biotype=protein_coding;locus_tag=RAF_RS01365;old_locus_tag=RAF_ORF0246
NC_012633.1	Protein Homology	CDS	269867	270367	.	-	0	ID=cds265;Parent=gene271;Dbxref=Genbank:WP_012719466.1;Name=WP_012719466.1;Note=J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone%3B may function in biogenesis of iron-sulfur proteins;gbkey=CDS;gene=hscB;product=Co-chaperone protein HscB homolog;protein_id=WP_012719466.1;transl_table=11
NC_012633.1	RefSeq	gene	270429	271010	.	+	.	ID=gene272;Name=rnhB;gbkey=Gene;gene=rnhB;gene_biotype=protein_coding;locus_tag=RAF_RS01370;old_locus_tag=RAF_ORF0247
NC_012633.1	Protein Homology	CDS	270429	271010	.	+	0	ID=cds266;Parent=gene272;Dbxref=Genbank:WP_012719467.1;Name=WP_012719467.1;Note=RNH2%3B RNase HII%3B binds manganese%3B endonuclease which specifically degrades the RNA of RNA-DNA hybrids;gbkey=CDS;gene=rnhB;product=ribonuclease HII;protein_id=WP_012719467.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	271062	271131	.	+	.	ID=id121;Note=RAF_REPEAT110_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	271164	273149	.	-	.	ID=gene273;Name=RAF_RS01375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01375;old_locus_tag=RAF_ORF0248
NC_012633.1	Protein Homology	CDS	271164	273149	.	-	0	ID=cds267;Parent=gene273;Dbxref=Genbank:WP_012719468.1;Name=WP_012719468.1;Note=The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands%2C where it probes for the presence of a lesion;gbkey=CDS;product=UvrABC system protein B;protein_id=WP_012719468.1;transl_table=11
NC_012633.1	RefSeq	gene	273220	273528	.	+	.	ID=gene274;Name=RAF_RS01380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01380;old_locus_tag=RAF_ORF0249
NC_012633.1	Protein Homology	CDS	273220	273528	.	+	0	ID=cds268;Parent=gene274;Dbxref=Genbank:WP_012719469.1;Name=WP_012719469.1;gbkey=CDS;product=glutaredoxin;protein_id=WP_012719469.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	273540	273614	.	-	.	ID=id122;Note=RAF_REPEAT111_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	273702	275441	.	+	.	ID=gene275;Name=RAF_RS01385;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS01385;pseudo=true
NC_012633.1	Protein Homology	CDS	273702	275441	.	+	0	ID=cds269;Parent=gene275;exception=annotated by transcript or proteomic data;gbkey=CDS;product=metal ABC transporter permease;pseudo=true;transl_except=(pos:275163..275165%2Caa:Other);transl_table=11
NC_012633.1	RefSeq	repeat_region	275518	275544	.	-	.	ID=id123;Note=RAF_REPEAT112_RR-1%2C RR-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	275585	275653	.	+	.	ID=id124;Note=RAF_REPEAT113_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	276259	276376	.	+	.	ID=id125;Note=RAF_REPEAT114_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	276521	279238	.	+	.	ID=gene276;Name=RAF_RS01390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01390;old_locus_tag=RAF_ORF0253
NC_012633.1	Protein Homology	CDS	276521	279238	.	+	0	ID=cds270;Parent=gene276;Dbxref=Genbank:WP_012719470.1;Name=WP_012719470.1;gbkey=CDS;product=DNA gyrase subunit A;protein_id=WP_012719470.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	279401	279425	.	+	.	ID=id126;Note=RAF_REPEAT115_RR-2%2C RR-2 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	279450	279526	.	+	.	ID=id127;Note=RAF_REPEAT116_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	279751	280017	.	-	.	ID=gene277;Name=RAF_RS01395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01395
NC_012633.1	Protein Homology	CDS	279751	280017	.	-	0	ID=cds271;Parent=gene277;Dbxref=Genbank:WP_016728151.1;Name=WP_016728151.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_016728151.1;transl_table=11
NC_012633.1	RefSeq	gene	280061	280305	.	+	.	ID=gene278;Name=RAF_RS01400;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS01400;pseudo=true
NC_012633.1	Protein Homology	CDS	280061	280305	.	+	0	ID=cds272;Parent=gene278;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transporter;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	280277	280569	.	+	.	ID=gene279;Name=RAF_RS01405;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS01405;pseudo=true
NC_012633.1	Protein Homology	CDS	280277	280569	.	+	0	ID=cds273;Parent=gene279;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transporter;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	280614	280904	.	+	.	ID=gene280;Name=RAF_RS01410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01410
NC_012633.1	Protein Homology	CDS	280614	280904	.	+	0	ID=cds274;Parent=gene280;Dbxref=Genbank:WP_041471813.1;Name=WP_041471813.1;gbkey=CDS;product=transporter;protein_id=WP_041471813.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	280977	281045	.	-	.	ID=id128;Note=RAF_REPEAT117_RPE-8%2C RPE-8 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	280989	281129	.	+	.	ID=gene281;Name=RAF_RS01415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01415
NC_012633.1	Protein Homology	CDS	280989	281129	.	+	0	ID=cds275;Parent=gene281;Dbxref=Genbank:WP_041471814.1;Name=WP_041471814.1;gbkey=CDS;product=peptide deformylase;protein_id=WP_041471814.1;transl_table=11
NC_012633.1	RefSeq	gene	281251	281436	.	+	.	ID=gene282;Name=RAF_RS01420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01420;old_locus_tag=RAF_ORF0256
NC_012633.1	Protein Homology	CDS	281251	281436	.	+	0	ID=cds276;Parent=gene282;Dbxref=Genbank:WP_010976936.1;Name=WP_010976936.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010976936.1;transl_table=11
NC_012633.1	RefSeq	gene	281463	281678	.	-	.	ID=gene283;Name=RAF_RS01425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01425
NC_012633.1	Protein Homology	CDS	281463	281678	.	-	0	ID=cds277;Parent=gene283;Dbxref=Genbank:WP_041471815.1;Name=WP_041471815.1;gbkey=CDS;product=FeS assembly protein IscX;protein_id=WP_041471815.1;transl_table=11
NC_012633.1	RefSeq	gene	281890	282417	.	+	.	ID=gene284;Name=RAF_RS01430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01430;old_locus_tag=RAF_ORF0257
NC_012633.1	Protein Homology	CDS	281890	282417	.	+	0	ID=cds278;Parent=gene284;Dbxref=Genbank:WP_012719471.1;Name=WP_012719471.1;gbkey=CDS;product=peptide deformylase 1;protein_id=WP_012719471.1;transl_table=11
NC_012633.1	RefSeq	gene	282414	283325	.	+	.	ID=gene285;Name=RAF_RS01435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01435;old_locus_tag=RAF_ORF0258
NC_012633.1	Protein Homology	CDS	282414	283325	.	+	0	ID=cds279;Parent=gene285;Dbxref=Genbank:WP_010976939.1;Name=WP_010976939.1;gbkey=CDS;product=methionyl-tRNA formyltransferase;protein_id=WP_010976939.1;transl_table=11
NC_012633.1	RefSeq	gene	283495	283911	.	+	.	ID=gene286;Name=RAF_RS01440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01440;old_locus_tag=RAF_ORF0259
NC_012633.1	Protein Homology	CDS	283495	283911	.	+	0	ID=cds280;Parent=gene286;Dbxref=Genbank:WP_012719472.1;Name=WP_012719472.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719472.1;transl_table=11
NC_012633.1	RefSeq	gene	284167	286951	.	+	.	ID=gene287;Name=RAF_RS01445;gbkey=Gene;gene_biotype=rRNA;locus_tag=RAF_RS01445;old_locus_tag=RAF_RNA07
NC_012633.1	RefSeq	rRNA	284167	286951	.	+	.	ID=rna6;Parent=gene287;gbkey=rRNA;product=23S ribosomal RNA
NC_012633.1	RefSeq	exon	284167	286951	.	+	.	ID=id129;Parent=rna6;gbkey=rRNA;product=23S ribosomal RNA
NC_012633.1	RefSeq	gene	287210	287324	.	+	.	ID=gene288;Name=RAF_RS01450;gbkey=Gene;gene_biotype=rRNA;locus_tag=RAF_RS01450;old_locus_tag=RAF_RNA08
NC_012633.1	cmsearch	rRNA	287210	287324	.	+	.	ID=rna7;Parent=gene288;gbkey=rRNA;product=5S ribosomal RNA
NC_012633.1	cmsearch	exon	287210	287324	.	+	.	ID=id130;Parent=rna7;gbkey=rRNA;product=5S ribosomal RNA
NC_012633.1	RefSeq	gene	287733	288409	.	+	.	ID=gene289;Name=RAF_RS01455;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS01455;pseudo=true
NC_012633.1	Protein Homology	CDS	287733	288409	.	+	0	ID=cds281;Parent=gene289;exception=annotated by transcript or proteomic data;gbkey=CDS;product=capsular biosynthesis protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	repeat_region	288393	288454	.	-	.	ID=id131;Note=RAF_REPEAT118_RPE-8%2C RPE-8 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	288457	289509	.	-	.	ID=gene290;Name=RAF_RS01460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01460;old_locus_tag=RAF_ORF0262
NC_012633.1	Protein Homology	CDS	288457	289509	.	-	0	ID=cds282;Parent=gene290;Dbxref=Genbank:WP_012719473.1;Name=WP_012719473.1;gbkey=CDS;product=ATPase;protein_id=WP_012719473.1;transl_table=11
NC_012633.1	RefSeq	gene	289506	289628	.	-	.	ID=gene291;Name=RAF_RS01465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01465
NC_012633.1	Protein Homology	CDS	289506	289628	.	-	0	ID=cds283;Parent=gene291;Dbxref=Genbank:WP_014013985.1;Name=WP_014013985.1;gbkey=CDS;product=nucleotidyltransferase;protein_id=WP_014013985.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	289582	289606	.	-	.	ID=id132;Note=RAF_REPEAT119_RR-2%2C RR-2 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	289640	289688	.	-	.	ID=id133;Note=RAF_REPEAT120_RPE-7%2C RPE-7 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	289724	290821	.	-	.	ID=gene292;Name=RAF_RS01470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01470;old_locus_tag=RAF_ORF0263
NC_012633.1	Protein Homology	CDS	289724	290821	.	-	0	ID=cds284;Parent=gene292;Dbxref=Genbank:WP_012719474.1;Name=WP_012719474.1;gbkey=CDS;product=S-adenosylmethionine--tRNA ribosyltransferase-isomerase;protein_id=WP_012719474.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	290288	290369	.	+	.	ID=id134;Note=RAF_REPEAT121_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	290988	291338	.	+	.	ID=gene293;Name=RAF_RS01475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01475
NC_012633.1	Protein Homology	CDS	290988	291338	.	+	0	ID=cds285;Parent=gene293;Dbxref=Genbank:WP_041471816.1;Name=WP_041471816.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471816.1;transl_table=11
NC_012633.1	RefSeq	gene	291728	291931	.	+	.	ID=gene294;Name=RAF_RS01480;end_range=291931,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS01480;partial=true;pseudo=true
NC_012633.1	Protein Homology	CDS	291728	291931	.	+	0	ID=cds286;Parent=gene294;end_range=291931,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	repeat_region	292110	292167	.	-	.	ID=id135;Note=RAF_REPEAT122_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	292188	293957	.	-	.	ID=gene295;Name=RAF_RS01485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01485;old_locus_tag=RAF_ORF0266
NC_012633.1	Protein Homology	CDS	292188	293957	.	-	0	ID=cds287;Parent=gene295;Dbxref=Genbank:WP_012719477.1;Name=WP_012719477.1;gbkey=CDS;product=multidrug ABC transporter ATP-binding protein;protein_id=WP_012719477.1;transl_table=11
NC_012633.1	RefSeq	gene	294138	294410	.	+	.	ID=gene296;Name=RAF_RS01490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01490;old_locus_tag=RAF_ORF0267
NC_012633.1	Protein Homology	CDS	294138	294410	.	+	0	ID=cds288;Parent=gene296;Dbxref=Genbank:WP_010976947.1;Name=WP_010976947.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010976947.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	294427	294542	.	-	.	ID=id136;Note=RAF_REPEAT123_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	294562	295932	.	+	.	ID=gene297;Name=RAF_RS01495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01495;old_locus_tag=RAF_ORF0268
NC_012633.1	Protein Homology	CDS	294562	295932	.	+	0	ID=cds289;Parent=gene297;Dbxref=Genbank:WP_012719478.1;Name=WP_012719478.1;gbkey=CDS;product=cytochrome D ubiquinol oxidase subunit I;protein_id=WP_012719478.1;transl_table=11
NC_012633.1	RefSeq	gene	295940	296959	.	+	.	ID=gene298;Name=RAF_RS01500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01500;old_locus_tag=RAF_ORF0269
NC_012633.1	Protein Homology	CDS	295940	296959	.	+	0	ID=cds290;Parent=gene298;Dbxref=Genbank:WP_012719479.1;Name=WP_012719479.1;gbkey=CDS;product=cytochrome D ubiquinol oxidase subunit II;protein_id=WP_012719479.1;transl_table=11
NC_012633.1	RefSeq	gene	297161	297403	.	+	.	ID=gene299;Name=RAF_RS01505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01505;old_locus_tag=RAF_ORF0270
NC_012633.1	Protein Homology	CDS	297161	297403	.	+	0	ID=cds291;Parent=gene299;Dbxref=Genbank:WP_012719480.1;Name=WP_012719480.1;gbkey=CDS;product=prevent-host-death family protein;protein_id=WP_012719480.1;transl_table=11
NC_012633.1	RefSeq	gene	297414	297674	.	+	.	ID=gene300;Name=RAF_RS01510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01510;old_locus_tag=RAF_ORF0271
NC_012633.1	Protein Homology	CDS	297414	297674	.	+	0	ID=cds292;Parent=gene300;Dbxref=Genbank:WP_004996425.1;Name=WP_004996425.1;gbkey=CDS;product=toxin;protein_id=WP_004996425.1;transl_table=11
NC_012633.1	RefSeq	gene	297667	298515	.	+	.	ID=gene301;Name=RAF_RS01515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01515;old_locus_tag=RAF_ORF0272
NC_012633.1	Protein Homology	CDS	297667	298515	.	+	0	ID=cds293;Parent=gene301;Dbxref=Genbank:WP_012719481.1;Name=WP_012719481.1;gbkey=CDS;product=glycosyltransferase;protein_id=WP_012719481.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	298495	298567	.	+	.	ID=id137;Note=RAF_REPEAT124_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	298589	299827	.	+	.	ID=gene302;Name=RAF_RS01520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01520;old_locus_tag=RAF_ORF0273
NC_012633.1	Protein Homology	CDS	298589	299827	.	+	0	ID=cds294;Parent=gene302;Dbxref=Genbank:WP_041471817.1;Name=WP_041471817.1;gbkey=CDS;product=zinc protease;protein_id=WP_041471817.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	299879	299953	.	+	.	ID=id138;Note=RAF_REPEAT125_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	299981	300691	.	+	.	ID=gene303;Name=RAF_RS01525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01525;old_locus_tag=RAF_ORF0274
NC_012633.1	Protein Homology	CDS	299981	300691	.	+	0	ID=cds295;Parent=gene303;Dbxref=Genbank:WP_004996420.1;Name=WP_004996420.1;gbkey=CDS;product=phosphoribosylaminoimidazole-succinocarboxamide synthase;protein_id=WP_004996420.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	300759	300825	.	-	.	ID=id139;Note=RAF_REPEAT126_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	300911	302498	.	+	.	ID=gene304;Name=RAF_RS01530;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS01530;old_locus_tag=RAF_ORF0275;pseudo=true
NC_012633.1	Protein Homology	CDS	300911	302498	.	+	0	ID=cds296;Parent=gene304;exception=annotated by transcript or proteomic data;gbkey=CDS;product=phosphoribosylaminoimidazole-succinocarboxamide synthase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	repeat_region	302509	302533	.	+	.	ID=id140;Note=RAF_REPEAT127_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	302594	304501	.	+	.	ID=gene305;Name=RAF_RS01535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01535;old_locus_tag=RAF_ORF0276
NC_012633.1	Protein Homology	CDS	302594	304501	.	+	0	ID=cds297;Parent=gene305;Dbxref=Genbank:WP_012719484.1;Name=WP_012719484.1;gbkey=CDS;product=threonine--tRNA ligase;protein_id=WP_012719484.1;transl_table=11
NC_012633.1	RefSeq	gene	304589	304813	.	+	.	ID=gene306;Name=RAF_RS01540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01540
NC_012633.1	Protein Homology	CDS	304589	304813	.	+	0	ID=cds298;Parent=gene306;Dbxref=Genbank:WP_041471818.1;Name=WP_041471818.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471818.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	304857	304972	.	-	.	ID=id141;Note=RAF_REPEAT128_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	305066	305437	.	+	.	ID=gene307;Name=RAF_RS01545;end_range=305437,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS01545;partial=true;pseudo=true
NC_012633.1	Protein Homology	CDS	305066	305437	.	+	0	ID=cds299;Parent=gene307;end_range=305437,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	306125	306238	.	+	.	ID=gene308;Name=RAF_RS01550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01550
NC_012633.1	Protein Homology	CDS	306125	306238	.	+	0	ID=cds300;Parent=gene308;Dbxref=Genbank:WP_014419734.1;Name=WP_014419734.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_014419734.1;transl_table=11
NC_012633.1	RefSeq	gene	306362	306757	.	+	.	ID=gene309;Name=RAF_RS01555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01555
NC_012633.1	Protein Homology	CDS	306362	306757	.	+	0	ID=cds301;Parent=gene309;Dbxref=Genbank:WP_041472001.1;Name=WP_041472001.1;gbkey=CDS;product=multidrug ABC transporter ATP-binding protein;protein_id=WP_041472001.1;transl_table=11
NC_012633.1	RefSeq	gene	306804	307061	.	-	.	ID=gene310;Name=RAF_RS01560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01560
NC_012633.1	Protein Homology	CDS	306804	307061	.	-	0	ID=cds302;Parent=gene310;Dbxref=Genbank:WP_041471819.1;Name=WP_041471819.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471819.1;transl_table=11
NC_012633.1	RefSeq	gene	307070	307348	.	-	.	ID=gene311;Name=RAF_RS01565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01565
NC_012633.1	Protein Homology	CDS	307070	307348	.	-	0	ID=cds303;Parent=gene311;Dbxref=Genbank:WP_041471820.1;Name=WP_041471820.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471820.1;transl_table=11
NC_012633.1	RefSeq	gene	307792	308208	.	-	.	ID=gene312;Name=RAF_RS01570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01570;old_locus_tag=RAF_ORF0281
NC_012633.1	Protein Homology	CDS	307792	308208	.	-	0	ID=cds304;Parent=gene312;Dbxref=Genbank:WP_012719485.1;Name=WP_012719485.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719485.1;transl_table=11
NC_012633.1	RefSeq	gene	308405	308869	.	-	.	ID=gene313;Name=RAF_RS01575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01575;old_locus_tag=RAF_ORF0283
NC_012633.1	Protein Homology	CDS	308405	308869	.	-	0	ID=cds305;Parent=gene313;Dbxref=Genbank:WP_041471821.1;Name=WP_041471821.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471821.1;transl_table=11
NC_012633.1	RefSeq	gene	309088	309288	.	-	.	ID=gene314;Name=RAF_RS01580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01580
NC_012633.1	Protein Homology	CDS	309088	309288	.	-	0	ID=cds306;Parent=gene314;Dbxref=Genbank:WP_041471822.1;Name=WP_041471822.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471822.1;transl_table=11
NC_012633.1	RefSeq	gene	309597	310958	.	+	.	ID=gene315;Name=RAF_RS01585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01585;old_locus_tag=RAF_ORF0284
NC_012633.1	Protein Homology	CDS	309597	310958	.	+	0	ID=cds307;Parent=gene315;Dbxref=Genbank:WP_012719488.1;Name=WP_012719488.1;gbkey=CDS;product=membrane protein;protein_id=WP_012719488.1;transl_table=11
NC_012633.1	RefSeq	gene	310960	311358	.	+	.	ID=gene316;Name=RAF_RS01590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01590;old_locus_tag=RAF_ORF0285
NC_012633.1	Protein Homology	CDS	310960	311358	.	+	0	ID=cds308;Parent=gene316;Dbxref=Genbank:WP_012719489.1;Name=WP_012719489.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719489.1;transl_table=11
NC_012633.1	RefSeq	gene	311367	311585	.	+	.	ID=gene317;Name=RAF_RS01595;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS01595;pseudo=true
NC_012633.1	Protein Homology	CDS	311367	311585	.	+	0	ID=cds309;Parent=gene317;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:311502..311504%2Caa:Other);transl_table=11
NC_012633.1	RefSeq	repeat_region	311410	311529	.	+	.	ID=id142;Note=RAF_REPEAT129_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	311575	313296	.	+	.	ID=gene318;Name=RAF_RS01600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01600;old_locus_tag=RAF_ORF0286
NC_012633.1	Protein Homology	CDS	311575	313296	.	+	0	ID=cds310;Parent=gene318;Dbxref=Genbank:WP_012719490.1;Name=WP_012719490.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719490.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	313337	313410	.	+	.	ID=id143;Note=RAF_REPEAT130_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	313506	315494	.	+	.	ID=gene319;Name=RAF_RS01605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01605;old_locus_tag=RAF_ORF0287
NC_012633.1	Protein Homology	CDS	313506	315494	.	+	0	ID=cds311;Parent=gene319;Dbxref=Genbank:WP_012719491.1;Name=WP_012719491.1;gbkey=CDS;product=DNA topoisomerase IV subunit B;protein_id=WP_012719491.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	315521	315575	.	+	.	ID=id144;Note=RAF_REPEAT131_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	315610	316980	.	+	.	ID=gene320;Name=RAF_RS01610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01610;old_locus_tag=RAF_ORF0288
NC_012633.1	Protein Homology	CDS	315610	316980	.	+	0	ID=cds312;Parent=gene320;Dbxref=Genbank:WP_012719492.1;Name=WP_012719492.1;gbkey=CDS;product=peptidase S41;protein_id=WP_012719492.1;transl_table=11
NC_012633.1	RefSeq	gene	317195	318688	.	+	.	ID=gene321;Name=RAF_RS01615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01615;old_locus_tag=RAF_ORF0289
NC_012633.1	Protein Homology	CDS	317195	318688	.	+	0	ID=cds313;Parent=gene321;Dbxref=Genbank:WP_012719493.1;Name=WP_012719493.1;gbkey=CDS;product=two-component system sensor histidine kinase;protein_id=WP_012719493.1;transl_table=11
NC_012633.1	RefSeq	gene	318754	319491	.	+	.	ID=gene322;Name=RAF_RS01620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01620;old_locus_tag=RAF_ORF0290
NC_012633.1	Protein Homology	CDS	318754	319491	.	+	0	ID=cds314;Parent=gene322;Dbxref=Genbank:WP_012719494.1;Name=WP_012719494.1;gbkey=CDS;product=biopolymer transporter TolR;protein_id=WP_012719494.1;transl_table=11
NC_012633.1	RefSeq	gene	319504	320166	.	+	.	ID=gene323;Name=RAF_RS01625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01625;old_locus_tag=RAF_ORF0291
NC_012633.1	Protein Homology	CDS	319504	320166	.	+	0	ID=cds315;Parent=gene323;Dbxref=Genbank:WP_012719495.1;Name=WP_012719495.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719495.1;transl_table=11
NC_012633.1	RefSeq	gene	320189	321433	.	+	.	ID=gene324;Name=RAF_RS01630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01630;old_locus_tag=RAF_ORF0292
NC_012633.1	Protein Homology	CDS	320189	321433	.	+	0	ID=cds316;Parent=gene324;Dbxref=Genbank:WP_012719496.1;Name=WP_012719496.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719496.1;transl_table=11
NC_012633.1	RefSeq	gene	321526	321993	.	+	.	ID=gene325;Name=RAF_RS01635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01635;old_locus_tag=RAF_ORF0293
NC_012633.1	Protein Homology	CDS	321526	321993	.	+	0	ID=cds317;Parent=gene325;Dbxref=Genbank:WP_012719497.1;Name=WP_012719497.1;gbkey=CDS;product=50S ribosomal protein L13;protein_id=WP_012719497.1;transl_table=11
NC_012633.1	RefSeq	gene	322000	322479	.	+	.	ID=gene326;Name=RAF_RS01640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01640;old_locus_tag=RAF_ORF0294
NC_012633.1	Protein Homology	CDS	322000	322479	.	+	0	ID=cds318;Parent=gene326;Dbxref=Genbank:WP_004996371.1;Name=WP_004996371.1;gbkey=CDS;product=30S ribosomal protein S9;protein_id=WP_004996371.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	322531	322633	.	+	.	ID=id145;Note=RAF_REPEAT132_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	322713	322789	.	+	.	ID=gene327;Name=RAF_RS01645;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS01645;old_locus_tag=RAF_RNA09
NC_012633.1	tRNAscan-SE	tRNA	322713	322789	.	+	.	ID=rna8;Parent=gene327;anticodon=(pos:322747..322749);gbkey=tRNA;product=tRNA-Met
NC_012633.1	tRNAscan-SE	exon	322713	322789	.	+	.	ID=id146;Parent=rna8;anticodon=(pos:322747..322749);gbkey=tRNA;product=tRNA-Met
NC_012633.1	RefSeq	repeat_region	322814	322917	.	-	.	ID=id147;Note=RAF_REPEAT133_RPE-2%2C RPE-2 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	322973	323114	.	+	.	ID=id148;Note=RAF_REPEAT134_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	323155	323211	.	+	.	ID=id149;Note=RAF_REPEAT135_RPE-8%2C RPE-8 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	323218	323418	.	+	.	ID=gene328;Name=RAF_RS01650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01650;old_locus_tag=RAF_ORF0295
NC_012633.1	Protein Homology	CDS	323218	323418	.	+	0	ID=cds319;Parent=gene328;Dbxref=Genbank:WP_010976975.1;Name=WP_010976975.1;gbkey=CDS;product=D-alanyl-D-alanine dipeptidase;protein_id=WP_010976975.1;transl_table=11
NC_012633.1	RefSeq	gene	323755	323916	.	+	.	ID=gene329;Name=RAF_RS01655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01655
NC_012633.1	Protein Homology	CDS	323755	323916	.	+	0	ID=cds320;Parent=gene329;Dbxref=Genbank:WP_041471823.1;Name=WP_041471823.1;gbkey=CDS;product=peptidase M15;protein_id=WP_041471823.1;transl_table=11
NC_012633.1	RefSeq	gene	324026	324319	.	+	.	ID=gene330;Name=RAF_RS01660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01660;old_locus_tag=RAF_ORF0296
NC_012633.1	Protein Homology	CDS	324026	324319	.	+	0	ID=cds321;Parent=gene330;Dbxref=Genbank:WP_012719498.1;Name=WP_012719498.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719498.1;transl_table=11
NC_012633.1	RefSeq	gene	324326	324547	.	+	.	ID=gene331;Name=RAF_RS01665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01665
NC_012633.1	Protein Homology	CDS	324326	324547	.	+	0	ID=cds322;Parent=gene331;Dbxref=Genbank:WP_041471824.1;Name=WP_041471824.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471824.1;transl_table=11
NC_012633.1	RefSeq	gene	324713	325198	.	-	.	ID=gene332;Name=RAF_RS01670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01670;old_locus_tag=RAF_ORF0297
NC_012633.1	Protein Homology	CDS	324713	325198	.	-	0	ID=cds323;Parent=gene332;Dbxref=Genbank:WP_012719499.1;Name=WP_012719499.1;gbkey=CDS;product=RNA pyrophosphohydrolase;protein_id=WP_012719499.1;transl_table=11
NC_012633.1	RefSeq	gene	325223	326575	.	-	.	ID=gene333;Name=RAF_RS01675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01675;old_locus_tag=RAF_ORF0298
NC_012633.1	Protein Homology	CDS	325223	326575	.	-	0	ID=cds324;Parent=gene333;Dbxref=Genbank:WP_012719500.1;Name=WP_012719500.1;gbkey=CDS;product=diguanylate cyclase;protein_id=WP_012719500.1;transl_table=11
NC_012633.1	RefSeq	gene	326651	327217	.	+	.	ID=gene334;Name=RAF_RS01680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01680;old_locus_tag=RAF_ORF0299
NC_012633.1	Protein Homology	CDS	326651	327217	.	+	0	ID=cds325;Parent=gene334;Dbxref=Genbank:WP_012719501.1;Name=WP_012719501.1;gbkey=CDS;product=elongation factor P;protein_id=WP_012719501.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	327272	327337	.	+	.	ID=id150;Note=RAF_REPEAT136_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	327439	328185	.	+	.	ID=gene335;Name=RAF_RS01685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01685;old_locus_tag=RAF_ORF0300
NC_012633.1	Protein Homology	CDS	327439	328185	.	+	0	ID=cds326;Parent=gene335;Dbxref=Genbank:WP_012719502.1;Name=WP_012719502.1;gbkey=CDS;product=inositol monophosphatase;protein_id=WP_012719502.1;transl_table=11
NC_012633.1	RefSeq	gene	328257	328580	.	+	.	ID=gene336;Name=RAF_RS01690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01690;old_locus_tag=RAF_ORF0301
NC_012633.1	Protein Homology	CDS	328257	328580	.	+	0	ID=cds327;Parent=gene336;Dbxref=Genbank:WP_010976982.1;Name=WP_010976982.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010976982.1;transl_table=11
NC_012633.1	RefSeq	gene	328614	329309	.	+	.	ID=gene337;Name=RAF_RS01695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01695;old_locus_tag=RAF_ORF0302
NC_012633.1	Protein Homology	CDS	328614	329309	.	+	0	ID=cds328;Parent=gene337;Dbxref=Genbank:WP_004996349.1;Name=WP_004996349.1;gbkey=CDS;product=phosphatidylserine decarboxylase proenzyme;protein_id=WP_004996349.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	329361	329502	.	-	.	ID=id151;Note=RAF_REPEAT137_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	329572	330336	.	+	.	ID=gene338;Name=RAF_RS01700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01700;old_locus_tag=RAF_ORF0303
NC_012633.1	Protein Homology	CDS	329572	330336	.	+	0	ID=cds329;Parent=gene338;Dbxref=Genbank:WP_012719503.1;Name=WP_012719503.1;gbkey=CDS;product=CDP-diacylglycerol--serine O-phosphatidyltransferase;protein_id=WP_012719503.1;transl_table=11
NC_012633.1	RefSeq	gene	330345	331397	.	+	.	ID=gene339;Name=RAF_RS01705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01705;old_locus_tag=RAF_ORF0304
NC_012633.1	Protein Homology	CDS	330345	331397	.	+	0	ID=cds330;Parent=gene339;Dbxref=Genbank:WP_012719504.1;Name=WP_012719504.1;gbkey=CDS;product=hemolysin D;protein_id=WP_012719504.1;transl_table=11
NC_012633.1	RefSeq	gene	332215	332418	.	-	.	ID=gene340;Name=RAF_RS01710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01710;old_locus_tag=RAF_ORF0305
NC_012633.1	Protein Homology	CDS	332215	332418	.	-	0	ID=cds331;Parent=gene340;Dbxref=Genbank:WP_012719505.1;Name=WP_012719505.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719505.1;transl_table=11
NC_012633.1	RefSeq	gene	332415	332657	.	-	.	ID=gene341;Name=RAF_RS01715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01715;old_locus_tag=RAF_ORF0306
NC_012633.1	Protein Homology	CDS	332415	332657	.	-	0	ID=cds332;Parent=gene341;Dbxref=Genbank:WP_012719506.1;Name=WP_012719506.1;gbkey=CDS;product=BolA family transcriptional regulator;protein_id=WP_012719506.1;transl_table=11
NC_012633.1	RefSeq	gene	332712	333938	.	+	.	ID=gene342;Name=RAF_RS01720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01720;old_locus_tag=RAF_ORF0307
NC_012633.1	Protein Homology	CDS	332712	333938	.	+	0	ID=cds333;Parent=gene342;Dbxref=Genbank:WP_012719507.1;Name=WP_012719507.1;gbkey=CDS;product=diguanylate phosphodiesterase;protein_id=WP_012719507.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	333990	334091	.	-	.	ID=id152;Note=RAF_REPEAT138_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	334159	335616	.	+	.	ID=gene343;Name=murC;gbkey=Gene;gene=murC;gene_biotype=protein_coding;locus_tag=RAF_RS01725;old_locus_tag=RAF_ORF0308
NC_012633.1	Protein Homology	CDS	334159	335616	.	+	0	ID=cds334;Parent=gene343;Dbxref=Genbank:WP_012719508.1;Name=WP_012719508.1;Note=Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis;gbkey=CDS;gene=murC;product=UDP-N-acetylmuramate--L-alanine ligase;protein_id=WP_012719508.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	335639	335663	.	+	.	ID=id153;Note=RAF_REPEAT139_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	335748	336635	.	+	.	ID=gene344;Name=RAF_RS01730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01730;old_locus_tag=RAF_ORF0309
NC_012633.1	Protein Homology	CDS	335748	336635	.	+	0	ID=cds335;Parent=gene344;Dbxref=Genbank:WP_041471825.1;Name=WP_041471825.1;gbkey=CDS;product=UDP-N-acetylenolpyruvoylglucosamine reductase;protein_id=WP_041471825.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	336665	336800	.	-	.	ID=id154;Note=RAF_REPEAT140_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	336879	337844	.	+	.	ID=gene345;Name=RAF_RS01735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01735;old_locus_tag=RAF_ORF0310
NC_012633.1	Protein Homology	CDS	336879	337844	.	+	0	ID=cds336;Parent=gene345;Dbxref=Genbank:WP_012719510.1;Name=WP_012719510.1;gbkey=CDS;product=D-alanine--D-alanine ligase;protein_id=WP_012719510.1;transl_table=11
NC_012633.1	RefSeq	gene	337841	338644	.	+	.	ID=gene346;Name=RAF_RS01740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01740;old_locus_tag=RAF_ORF0311
NC_012633.1	Protein Homology	CDS	337841	338644	.	+	0	ID=cds337;Parent=gene346;Dbxref=Genbank:WP_012719511.1;Name=WP_012719511.1;gbkey=CDS;product=cell division protein FtsQ;protein_id=WP_012719511.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	338678	338745	.	+	.	ID=id155;Note=RAF_REPEAT141_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	338772	340007	.	+	.	ID=gene347;Name=RAF_RS01745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01745;old_locus_tag=RAF_ORF0312
NC_012633.1	Protein Homology	CDS	338772	340007	.	+	0	ID=cds338;Parent=gene347;Dbxref=Genbank:WP_012719512.1;Name=WP_012719512.1;gbkey=CDS;product=cell division protein FtsA;protein_id=WP_012719512.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	340048	340072	.	-	.	ID=id156;Note=RAF_REPEAT142_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	340150	340626	.	-	.	ID=gene348;Name=RAF_RS01750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01750;old_locus_tag=RAF_ORF0313
NC_012633.1	Protein Homology	CDS	340150	340626	.	-	0	ID=cds339;Parent=gene348;Dbxref=Genbank:WP_012719513.1;Name=WP_012719513.1;gbkey=CDS;product=membrane protein;protein_id=WP_012719513.1;transl_table=11
NC_012633.1	RefSeq	gene	340610	341137	.	-	.	ID=gene349;Name=RAF_RS01755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01755;old_locus_tag=RAF_ORF0314
NC_012633.1	Protein Homology	CDS	340610	341137	.	-	0	ID=cds340;Parent=gene349;Dbxref=Genbank:WP_012719514.1;Name=WP_012719514.1;gbkey=CDS;product=cysteine desulfurase;protein_id=WP_012719514.1;transl_table=11
NC_012633.1	RefSeq	gene	341251	342321	.	+	.	ID=gene350;Name=RAF_RS01760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01760;old_locus_tag=RAF_ORF0315
NC_012633.1	Protein Homology	CDS	341251	342321	.	+	0	ID=cds341;Parent=gene350;Dbxref=Genbank:WP_012719515.1;Name=WP_012719515.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719515.1;transl_table=11
NC_012633.1	RefSeq	gene	342330	343196	.	-	.	ID=gene351;Name=RAF_RS01765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01765;old_locus_tag=RAF_ORF0316
NC_012633.1	Protein Homology	CDS	342330	343196	.	-	0	ID=cds342;Parent=gene351;Dbxref=Genbank:WP_012719516.1;Name=WP_012719516.1;gbkey=CDS;product=UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase;protein_id=WP_012719516.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	343281	343405	.	-	.	ID=id157;Note=RAF_REPEAT143_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	343414	343557	.	+	.	ID=id158;Note=RAF_REPEAT144_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	343560	344708	.	-	.	ID=gene352;Name=RAF_RS01770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01770;old_locus_tag=RAF_ORF0317
NC_012633.1	Protein Homology	CDS	343560	344708	.	-	0	ID=cds343;Parent=gene352;Dbxref=Genbank:WP_012719517.1;Name=WP_012719517.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719517.1;transl_table=11
NC_012633.1	RefSeq	gene	345136	347208	.	+	.	ID=gene353;Name=RAF_RS01775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01775;old_locus_tag=RAF_ORF0318
NC_012633.1	Protein Homology	CDS	345136	347208	.	+	0	ID=cds344;Parent=gene353;Dbxref=Genbank:WP_012719518.1;Name=WP_012719518.1;gbkey=CDS;product=ribonuclease E;protein_id=WP_012719518.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	347260	347362	.	-	.	ID=id159;Note=RAF_REPEAT145_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	347454	348467	.	+	.	ID=gene354;Name=RAF_RS01780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01780;old_locus_tag=RAF_ORF0319
NC_012633.1	Protein Homology	CDS	347454	348467	.	+	0	ID=cds345;Parent=gene354;Dbxref=Genbank:WP_012719519.1;Name=WP_012719519.1;gbkey=CDS;product=heme A synthase;protein_id=WP_012719519.1;transl_table=11
NC_012633.1	RefSeq	gene	348480	349391	.	+	.	ID=gene355;Name=RAF_RS01785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01785;old_locus_tag=RAF_ORF0320
NC_012633.1	Protein Homology	CDS	348480	349391	.	+	0	ID=cds346;Parent=gene355;Dbxref=Genbank:WP_012719520.1;Name=WP_012719520.1;gbkey=CDS;product=ribosomal large subunit pseudouridine synthase C;protein_id=WP_012719520.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	349377	349517	.	-	.	ID=id160;Note=RAF_REPEAT146_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	349546	350727	.	+	.	ID=gene356;Name=RAF_RS01790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01790;old_locus_tag=RAF_ORF0321
NC_012633.1	Protein Homology	CDS	349546	350727	.	+	0	ID=cds347;Parent=gene356;Dbxref=Genbank:WP_012719521.1;Name=WP_012719521.1;gbkey=CDS;product=penicillin-binding protein;protein_id=WP_012719521.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	350730	350872	.	+	.	ID=id161;Note=RAF_REPEAT147_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	350874	351689	.	+	.	ID=gene357;Name=RAF_RS01795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01795;old_locus_tag=RAF_ORF0322
NC_012633.1	Protein Homology	CDS	350874	351689	.	+	0	ID=cds348;Parent=gene357;Dbxref=Genbank:WP_012719522.1;Name=WP_012719522.1;gbkey=CDS;product=exodeoxyribonuclease III;protein_id=WP_012719522.1;transl_table=11
NC_012633.1	RefSeq	gene	351712	352692	.	+	.	ID=gene358;Name=RAF_RS01800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01800;old_locus_tag=RAF_ORF0323
NC_012633.1	Protein Homology	CDS	351712	352692	.	+	0	ID=cds349;Parent=gene358;Dbxref=Genbank:WP_012719523.1;Name=WP_012719523.1;gbkey=CDS;product=pyruvate dehydrogenase E1 subunit alpha;protein_id=WP_012719523.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	352696	352770	.	-	.	ID=id162;Note=RAF_REPEAT148_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	352856	353836	.	+	.	ID=gene359;Name=RAF_RS01805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01805;old_locus_tag=RAF_ORF0324
NC_012633.1	Protein Homology	CDS	352856	353836	.	+	0	ID=cds350;Parent=gene359;Dbxref=Genbank:WP_012719524.1;Name=WP_012719524.1;gbkey=CDS;product=pyruvate dehydrogenase subunit beta;protein_id=WP_012719524.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	353881	353950	.	+	.	ID=id163;Note=RAF_REPEAT149_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	353974	355803	.	-	.	ID=gene360;Name=RAF_RS01810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01810;old_locus_tag=RAF_ORF0325
NC_012633.1	Protein Homology	CDS	353974	355803	.	-	0	ID=cds351;Parent=gene360;Dbxref=Genbank:WP_010977004.1;Name=WP_010977004.1;gbkey=CDS;product=GTP-binding protein;protein_id=WP_010977004.1;transl_table=11
NC_012633.1	RefSeq	gene	355952	356173	.	+	.	ID=gene361;Name=RAF_RS01815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01815
NC_012633.1	Protein Homology	CDS	355952	356173	.	+	0	ID=cds352;Parent=gene361;Dbxref=Genbank:WP_041471826.1;Name=WP_041471826.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471826.1;transl_table=11
NC_012633.1	RefSeq	gene	356157	356486	.	+	.	ID=gene362;Name=RAF_RS01820;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS01820;pseudo=true
NC_012633.1	Protein Homology	CDS	356157	356486	.	+	0	ID=cds353;Parent=gene362;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	repeat_region	356741	356772	.	-	.	ID=id164;Note=RAF_REPEAT150_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	356780	356859	.	+	.	ID=id165;Note=RAF_REPEAT151_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	356897	357451	.	+	.	ID=gene363;Name=RAF_RS01825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01825;old_locus_tag=RAF_ORF0326
NC_012633.1	Protein Homology	CDS	356897	357451	.	+	0	ID=cds354;Parent=gene363;Dbxref=Genbank:WP_010977007.1;Name=WP_010977007.1;gbkey=CDS;product=membrane protein;protein_id=WP_010977007.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	357473	357608	.	+	.	ID=id166;Note=RAF_REPEAT152_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	357633	359084	.	+	.	ID=gene364;Name=RAF_RS01830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01830;old_locus_tag=RAF_ORF0327
NC_012633.1	Protein Homology	CDS	357633	359084	.	+	0	ID=cds355;Parent=gene364;Dbxref=Genbank:WP_012719525.1;Name=WP_012719525.1;Note=catalyzes the formation of 2-oxoglutarate from isocitrate;gbkey=CDS;product=isocitrate dehydrogenase;protein_id=WP_012719525.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	359114	359180	.	+	.	ID=id167;Note=RAF_REPEAT153_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	359199	359519	.	+	.	ID=gene365;Name=RAF_RS01835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01835;old_locus_tag=RAF_ORF0328
NC_012633.1	Protein Homology	CDS	359199	359519	.	+	0	ID=cds356;Parent=gene365;Dbxref=Genbank:WP_004996272.1;Name=WP_004996272.1;gbkey=CDS;product=cation:proton antiporter;protein_id=WP_004996272.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	359493	359559	.	-	.	ID=id168;Note=RAF_REPEAT154_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	359583	360656	.	+	.	ID=gene366;Name=RAF_RS01840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01840;old_locus_tag=RAF_ORF0329
NC_012633.1	Protein Homology	CDS	359583	360656	.	+	0	ID=cds357;Parent=gene366;Dbxref=Genbank:WP_012719526.1;Name=WP_012719526.1;Note=subunit B of antiporter complex involved in resistance to high concentrations of Na+%2C K+%2C Li+ and/or alkali;gbkey=CDS;product=cation:proton antiporter;protein_id=WP_012719526.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	360163	360242	.	-	.	ID=id169;Note=RAF_REPEAT155_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	360649	361296	.	+	.	ID=gene367;Name=RAF_RS01845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01845;old_locus_tag=RAF_ORF0330
NC_012633.1	Protein Homology	CDS	360649	361296	.	+	0	ID=cds358;Parent=gene367;Dbxref=Genbank:WP_012719527.1;Name=WP_012719527.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719527.1;transl_table=11
NC_012633.1	RefSeq	gene	361371	361829	.	+	.	ID=gene368;Name=RAF_RS01850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01850;old_locus_tag=RAF_ORF0331
NC_012633.1	Protein Homology	CDS	361371	361829	.	+	0	ID=cds359;Parent=gene368;Dbxref=Genbank:WP_012719528.1;Name=WP_012719528.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719528.1;transl_table=11
NC_012633.1	RefSeq	gene	361851	362384	.	+	.	ID=gene369;Name=RAF_RS01855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01855;old_locus_tag=RAF_ORF0332
NC_012633.1	Protein Homology	CDS	361851	362384	.	+	0	ID=cds360;Parent=gene369;Dbxref=Genbank:WP_004996261.1;Name=WP_004996261.1;gbkey=CDS;product=ubiquinol-cytochrome C reductase;protein_id=WP_004996261.1;transl_table=11
NC_012633.1	RefSeq	gene	362391	363587	.	+	.	ID=gene370;Name=RAF_RS01860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01860;old_locus_tag=RAF_ORF0333
NC_012633.1	Protein Homology	CDS	362391	363587	.	+	0	ID=cds361;Parent=gene370;Dbxref=Genbank:WP_012719529.1;Name=WP_012719529.1;gbkey=CDS;product=cytochrome B;protein_id=WP_012719529.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	363611	363710	.	+	.	ID=id170;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	363611	363685	.	-	.	ID=id171;Note=RAF_REPEAT156_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	363987	364062	.	+	.	ID=id172;Note=RAF_REPEAT157_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	364078	364833	.	+	.	ID=gene371;Name=RAF_RS01865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01865;old_locus_tag=RAF_ORF0334
NC_012633.1	Protein Homology	CDS	364078	364833	.	+	0	ID=cds362;Parent=gene371;Dbxref=Genbank:WP_012719530.1;Name=WP_012719530.1;gbkey=CDS;product=cytochrome C;protein_id=WP_012719530.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	364895	365013	.	+	.	ID=id173;Note=RAF_REPEAT158_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	365109	365299	.	+	.	ID=gene372;Name=RAF_RS01870;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS01870;pseudo=true
NC_012633.1	Protein Homology	CDS	365109	365299	.	+	0	ID=cds363;Parent=gene372;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	365369	365563	.	+	.	ID=gene373;Name=RAF_RS01875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01875
NC_012633.1	Protein Homology	CDS	365369	365563	.	+	0	ID=cds364;Parent=gene373;Dbxref=Genbank:WP_010977017.1;Name=WP_010977017.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010977017.1;transl_table=11
NC_012633.1	RefSeq	gene	365624	366127	.	+	.	ID=gene374;Name=RAF_RS01880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01880;old_locus_tag=RAF_ORF0337
NC_012633.1	Protein Homology	CDS	365624	366127	.	+	0	ID=cds365;Parent=gene374;Dbxref=Genbank:WP_012719531.1;Name=WP_012719531.1;gbkey=CDS;product=heat-shock protein;protein_id=WP_012719531.1;transl_table=11
NC_012633.1	RefSeq	gene	366365	366550	.	-	.	ID=gene375;Name=RAF_RS01885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01885
NC_012633.1	Protein Homology	CDS	366365	366550	.	-	0	ID=cds366;Parent=gene375;Dbxref=Genbank:WP_012150576.1;Name=WP_012150576.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012150576.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	366935	367002	.	-	.	ID=id174;Note=RAF_REPEAT159_RPE-4%2C RPE-4 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	366986	367275	.	-	.	ID=gene376;Name=RAF_RS01890;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS01890;pseudo=true
NC_012633.1	Protein Homology	CDS	366986	367275	.	-	0	ID=cds367;Parent=gene376;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	367537	367835	.	-	.	ID=gene377;Name=RAF_RS01895;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS01895;pseudo=true
NC_012633.1	Protein Homology	CDS	367537	367835	.	-	0	ID=cds368;Parent=gene377;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(367770..367772)%2Caa:Other);transl_table=11
NC_012633.1	RefSeq	gene	368022	369128	.	-	.	ID=gene378;Name=RAF_RS01900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01900;old_locus_tag=RAF_ORF0343
NC_012633.1	Protein Homology	CDS	368022	369128	.	-	0	ID=cds369;Parent=gene378;Dbxref=Genbank:WP_012719532.1;Name=WP_012719532.1;gbkey=CDS;product=peptide chain release factor 2;protein_id=WP_012719532.1;transl_table=11
NC_012633.1	RefSeq	gene	369247	371049	.	+	.	ID=gene379;Name=RAF_RS01905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01905;old_locus_tag=RAF_ORF0344
NC_012633.1	Protein Homology	CDS	369247	371049	.	+	0	ID=cds370;Parent=gene379;Dbxref=Genbank:WP_012719533.1;Name=WP_012719533.1;Note=back-translocating Elongation Factor EF4%3B binds to the ribosome on the universally-conserved alpha-sarcin loop;gbkey=CDS;product=elongation factor 4;protein_id=WP_012719533.1;transl_table=11
NC_012633.1	RefSeq	gene	371141	371215	.	+	.	ID=gene380;Name=RAF_RS01910;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS01910;old_locus_tag=RAF_RNA10
NC_012633.1	tRNAscan-SE	tRNA	371141	371215	.	+	.	ID=rna9;Parent=gene380;anticodon=(pos:371173..371175);gbkey=tRNA;product=tRNA-Asn
NC_012633.1	tRNAscan-SE	exon	371141	371215	.	+	.	ID=id175;Parent=rna9;anticodon=(pos:371173..371175);gbkey=tRNA;product=tRNA-Asn
NC_012633.1	RefSeq	gene	372150	372356	.	-	.	ID=gene381;Name=RAF_RS01915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01915
NC_012633.1	Protein Homology	CDS	372150	372356	.	-	0	ID=cds371;Parent=gene381;Dbxref=Genbank:WP_049752702.1;Name=WP_049752702.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_049752702.1;transl_table=11
NC_012633.1	RefSeq	gene	372336	372602	.	+	.	ID=gene382;Name=RAF_RS07060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07060
NC_012633.1	Protein Homology	CDS	372336	372602	.	+	0	ID=cds372;Parent=gene382;Dbxref=Genbank:WP_049752703.1;Name=WP_049752703.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_049752703.1;transl_table=11
NC_012633.1	RefSeq	gene	372631	372945	.	+	.	ID=gene383;Name=RAF_RS07065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07065
NC_012633.1	Protein Homology	CDS	372631	372945	.	+	0	ID=cds373;Parent=gene383;Dbxref=Genbank:WP_049752704.1;Name=WP_049752704.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_049752704.1;transl_table=11
NC_012633.1	RefSeq	gene	373021	373257	.	+	.	ID=gene384;Name=RAF_RS01925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01925
NC_012633.1	Protein Homology	CDS	373021	373257	.	+	0	ID=cds374;Parent=gene384;Dbxref=Genbank:WP_041471827.1;Name=WP_041471827.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471827.1;transl_table=11
NC_012633.1	RefSeq	gene	373480	373867	.	+	.	ID=gene385;Name=RAF_RS01930;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS01930;pseudo=true
NC_012633.1	Protein Homology	CDS	373480	373867	.	+	0	ID=cds375;Parent=gene385;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	374097	374309	.	-	.	ID=gene386;Name=RAF_RS01935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01935
NC_012633.1	Protein Homology	CDS	374097	374309	.	-	0	ID=cds376;Parent=gene386;Dbxref=Genbank:WP_014410512.1;Name=WP_014410512.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_014410512.1;transl_table=11
NC_012633.1	RefSeq	gene	374539	375240	.	+	.	ID=gene387;Name=RAF_RS01940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01940;old_locus_tag=RAF_ORF0348
NC_012633.1	Protein Homology	CDS	374539	375240	.	+	0	ID=cds377;Parent=gene387;Dbxref=Genbank:WP_041471828.1;Name=WP_041471828.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471828.1;transl_table=11
NC_012633.1	RefSeq	gene	375395	375886	.	+	.	ID=gene388;Name=RAF_RS01945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01945
NC_012633.1	Protein Homology	CDS	375395	375886	.	+	0	ID=cds378;Parent=gene388;Dbxref=Genbank:WP_041471829.1;Name=WP_041471829.1;gbkey=CDS;product=guanosine-3'%2C5'-bis(diphosphate) 3'-pyrophosphohydrolase;protein_id=WP_041471829.1;transl_table=11
NC_012633.1	RefSeq	gene	376079	376438	.	-	.	ID=gene389;Name=RAF_RS01950;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS01950;pseudo=true
NC_012633.1	Protein Homology	CDS	376079	376438	.	-	0	ID=cds379;Parent=gene389;gbkey=CDS;product=MFS transporter;pseudo=true;transl_except=(pos:complement(376394..376396)%2Caa:Other);transl_table=11
NC_012633.1	RefSeq	repeat_region	376777	376876	.	+	.	ID=id176;gbkey=repeat_region
NC_012633.1	RefSeq	gene	376937	378037	.	-	.	ID=gene390;Name=RAF_RS01955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01955;old_locus_tag=RAF_ORF0351
NC_012633.1	Protein Homology	CDS	376937	378037	.	-	0	ID=cds380;Parent=gene390;Dbxref=Genbank:WP_012719538.1;Name=WP_012719538.1;gbkey=CDS;product=cell wall shape-determining protein;protein_id=WP_012719538.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	378065	378164	.	+	.	ID=id177;Note=RAF_REPEAT160_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	378193	380382	.	-	.	ID=gene391;Name=RAF_RS01960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01960;old_locus_tag=RAF_ORF0352
NC_012633.1	Protein Homology	CDS	378193	380382	.	-	0	ID=cds381;Parent=gene391;Dbxref=Genbank:WP_012719539.1;Name=WP_012719539.1;gbkey=CDS;product=peptidase S9;protein_id=WP_012719539.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	379742	379857	.	-	.	ID=id178;Note=RAF_REPEAT161_RPE-3%2C RPE-3 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	380442	380534	.	+	.	ID=id179;Note=RAF_REPEAT162_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	380561	382078	.	-	.	ID=gene392;Name=RAF_RS01965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01965;old_locus_tag=RAF_ORF0353
NC_012633.1	Protein Homology	CDS	380561	382078	.	-	0	ID=cds382;Parent=gene392;Dbxref=Genbank:WP_012719540.1;Name=WP_012719540.1;Note=subunit D of antiporter complex involved in resistance to high concentrations of Na+%2C K+%2C Li+ and/or alkali%3B contains an oxidoreductase domain%3B catalyzes the transfer of electrons from NADH to ubiquinone;gbkey=CDS;product=cation:proton antiporter;protein_id=WP_012719540.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	380943	381034	.	+	.	ID=id180;Note=RAF_REPEAT163_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	382080	382193	.	-	.	ID=gene393;Name=RAF_RS01970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01970
NC_012633.1	Protein Homology	CDS	382080	382193	.	-	0	ID=cds383;Parent=gene393;Dbxref=Genbank:WP_041472003.1;Name=WP_041472003.1;gbkey=CDS;product=toxin of toxin-antitoxin system;protein_id=WP_041472003.1;transl_table=11
NC_012633.1	RefSeq	gene	382167	382485	.	-	.	ID=gene394;Name=RAF_RS01975;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS01975;partial=true;pseudo=true;start_range=.,382167
NC_012633.1	Protein Homology	CDS	382167	382485	.	-	0	ID=cds384;Parent=gene394;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=cation:proton antiporter;pseudo=true;start_range=.,382167;transl_table=11
NC_012633.1	RefSeq	gene	382476	382763	.	-	.	ID=gene395;Name=RAF_RS01980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01980;old_locus_tag=RAF_ORF0354
NC_012633.1	Protein Homology	CDS	382476	382763	.	-	0	ID=cds385;Parent=gene395;Dbxref=Genbank:WP_012150592.1;Name=WP_012150592.1;gbkey=CDS;product=antitoxin;protein_id=WP_012150592.1;transl_table=11
NC_012633.1	RefSeq	gene	382950	384413	.	-	.	ID=gene396;Name=RAF_RS01985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01985;old_locus_tag=RAF_ORF0355
NC_012633.1	Protein Homology	CDS	382950	384413	.	-	0	ID=cds386;Parent=gene396;Dbxref=Genbank:WP_012719541.1;Name=WP_012719541.1;Note=subunit D of antiporter complex involved in resistance to high concentrations of Na+%2C K+%2C Li+ and/or alkali%3B contains an oxidoreductase domain%3B catalyzes the transfer of electrons from NADH to ubiquinone;gbkey=CDS;product=cation:proton antiporter;protein_id=WP_012719541.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	384472	384595	.	-	.	ID=id181;Note=RAF_REPEAT164_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	384560	385861	.	-	.	ID=gene397;Name=RAF_RS01990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01990;old_locus_tag=RAF_ORF0356
NC_012633.1	Protein Homology	CDS	384560	385861	.	-	0	ID=cds387;Parent=gene397;Dbxref=Genbank:WP_010977037.1;Name=WP_010977037.1;Note=subunit D of antiporter complex involved in resistance to high concentrations of Na+%2C K+%2C Li+ and/or alkali%3B contains an oxidoreductase domain%3B catalyzes the transfer of electrons from NADH to ubiquinone;gbkey=CDS;product=cation:proton antiporter;protein_id=WP_010977037.1;transl_table=11
NC_012633.1	RefSeq	gene	385858	386193	.	-	.	ID=gene398;Name=RAF_RS01995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS01995;old_locus_tag=RAF_ORF0357
NC_012633.1	Protein Homology	CDS	385858	386193	.	-	0	ID=cds388;Parent=gene398;Dbxref=Genbank:WP_012719542.1;Name=WP_012719542.1;gbkey=CDS;product=cation:proton antiporter;protein_id=WP_012719542.1;transl_table=11
NC_012633.1	RefSeq	gene	386272	387024	.	-	.	ID=gene399;Name=RAF_RS02000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02000;old_locus_tag=RAF_ORF0358
NC_012633.1	Protein Homology	CDS	386272	387024	.	-	0	ID=cds389;Parent=gene399;Dbxref=Genbank:WP_010977039.1;Name=WP_010977039.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010977039.1;transl_table=11
NC_012633.1	RefSeq	gene	387026	387724	.	-	.	ID=gene400;Name=RAF_RS02005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02005;old_locus_tag=RAF_ORF0359
NC_012633.1	Protein Homology	CDS	387026	387724	.	-	0	ID=cds390;Parent=gene400;Dbxref=Genbank:WP_012719543.1;Name=WP_012719543.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719543.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	387931	388044	.	-	.	ID=id182;Note=RAF_REPEAT165_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	388185	388364	.	+	.	ID=gene401;Name=RAF_RS02010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02010;old_locus_tag=RAF_ORF0360
NC_012633.1	Protein Homology	CDS	388185	388364	.	+	0	ID=cds391;Parent=gene401;Dbxref=Genbank:WP_010977041.1;Name=WP_010977041.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010977041.1;transl_table=11
NC_012633.1	RefSeq	gene	388414	389145	.	+	.	ID=gene402;Name=RAF_RS02015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02015;old_locus_tag=RAF_ORF0361
NC_012633.1	Protein Homology	CDS	388414	389145	.	+	0	ID=cds392;Parent=gene402;Dbxref=Genbank:WP_012719544.1;Name=WP_012719544.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719544.1;transl_table=11
NC_012633.1	RefSeq	gene	389132	389605	.	+	.	ID=gene403;Name=RAF_RS02020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02020;old_locus_tag=RAF_ORF0362
NC_012633.1	Protein Homology	CDS	389132	389605	.	+	0	ID=cds393;Parent=gene403;Dbxref=Genbank:WP_012719545.1;Name=WP_012719545.1;gbkey=CDS;product=VirB9;protein_id=WP_012719545.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	389654	389729	.	+	.	ID=id183;Note=RAF_REPEAT166_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	389789	391237	.	+	.	ID=gene404;Name=RAF_RS02025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02025;old_locus_tag=RAF_ORF0363
NC_012633.1	Protein Homology	CDS	389789	391237	.	+	0	ID=cds394;Parent=gene404;Dbxref=Genbank:WP_012719546.1;Name=WP_012719546.1;gbkey=CDS;product=VirB10;protein_id=WP_012719546.1;transl_table=11
NC_012633.1	RefSeq	gene	391234	392238	.	+	.	ID=gene405;Name=RAF_RS02030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02030;old_locus_tag=RAF_ORF0364
NC_012633.1	Protein Homology	CDS	391234	392238	.	+	0	ID=cds395;Parent=gene405;Dbxref=Genbank:WP_012719547.1;Name=WP_012719547.1;gbkey=CDS;product=type VI secretion protein;protein_id=WP_012719547.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	392243	392311	.	-	.	ID=id184;Note=RAF_REPEAT167_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	392393	394168	.	+	.	ID=gene406;Name=RAF_RS02035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02035;old_locus_tag=RAF_ORF0365
NC_012633.1	Protein Homology	CDS	392393	394168	.	+	0	ID=cds396;Parent=gene406;Dbxref=Genbank:WP_012719548.1;Name=WP_012719548.1;gbkey=CDS;product=type IV secretion system protein VirD4;protein_id=WP_012719548.1;transl_table=11
NC_012633.1	RefSeq	gene	394170	395582	.	+	.	ID=gene407;Name=RAF_RS02040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02040;old_locus_tag=RAF_ORF0366
NC_012633.1	Protein Homology	CDS	394170	395582	.	+	0	ID=cds397;Parent=gene407;Dbxref=Genbank:WP_012719549.1;Name=WP_012719549.1;gbkey=CDS;product=exopolyphosphatase;protein_id=WP_012719549.1;transl_table=11
NC_012633.1	RefSeq	gene	395598	395786	.	+	.	ID=gene408;Name=RAF_RS02045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02045
NC_012633.1	GeneMarkS+	CDS	395598	395786	.	+	0	ID=cds398;Parent=gene408;Dbxref=Genbank:WP_041471830.1;Name=WP_041471830.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471830.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	395626	395764	.	-	.	ID=id185;Note=RAF_REPEAT168_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	395796	396107	.	-	.	ID=gene409;Name=RAF_RS02050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02050
NC_012633.1	Protein Homology	CDS	395796	396107	.	-	0	ID=cds399;Parent=gene409;Dbxref=Genbank:WP_041472004.1;Name=WP_041472004.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041472004.1;transl_table=11
NC_012633.1	RefSeq	gene	396235	396525	.	-	.	ID=gene410;Name=RAF_RS02055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02055;old_locus_tag=RAF_ORF0368
NC_012633.1	Protein Homology	CDS	396235	396525	.	-	0	ID=cds400;Parent=gene410;Dbxref=Genbank:WP_012719551.1;Name=WP_012719551.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719551.1;transl_table=11
NC_012633.1	RefSeq	gene	396984	397280	.	-	.	ID=gene411;Name=RAF_RS02060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02060
NC_012633.1	Protein Homology	CDS	396984	397280	.	-	0	ID=cds401;Parent=gene411;Dbxref=Genbank:WP_010977049.1;Name=WP_010977049.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010977049.1;transl_table=11
NC_012633.1	RefSeq	gene	397587	397871	.	+	.	ID=gene412;Name=RAF_RS02065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02065;old_locus_tag=RAF_ORF0370
NC_012633.1	Protein Homology	CDS	397587	397871	.	+	0	ID=cds402;Parent=gene412;Dbxref=Genbank:WP_012719553.1;Name=WP_012719553.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719553.1;transl_table=11
NC_012633.1	RefSeq	gene	398147	398263	.	-	.	ID=gene413;Name=RAF_RS02070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02070;old_locus_tag=RAF_ORF0371
NC_012633.1	Protein Homology	CDS	398147	398263	.	-	0	ID=cds403;Parent=gene413;Dbxref=Genbank:WP_041472005.1;Name=WP_041472005.1;gbkey=CDS;product=host specificity protein;protein_id=WP_041472005.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	398326	398456	.	-	.	ID=id186;Note=RAF_REPEAT169_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	398505	399392	.	+	.	ID=gene414;Name=RAF_RS02075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02075;old_locus_tag=RAF_ORF0372
NC_012633.1	Protein Homology	CDS	398505	399392	.	+	0	ID=cds404;Parent=gene414;Dbxref=Genbank:WP_012719555.1;Name=WP_012719555.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719555.1;transl_table=11
NC_012633.1	RefSeq	gene	399355	400200	.	+	.	ID=gene415;Name=RAF_RS02080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02080;old_locus_tag=RAF_ORF0373
NC_012633.1	Protein Homology	CDS	399355	400200	.	+	0	ID=cds405;Parent=gene415;Dbxref=Genbank:WP_010977053.1;Name=WP_010977053.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010977053.1;transl_table=11
NC_012633.1	RefSeq	gene	400203	400979	.	+	.	ID=gene416;Name=RAF_RS02085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02085;old_locus_tag=RAF_ORF0374
NC_012633.1	Protein Homology	CDS	400203	400979	.	+	0	ID=cds406;Parent=gene416;Dbxref=Genbank:WP_012719556.1;Name=WP_012719556.1;gbkey=CDS;product=3'-5'-bisphosphate nucleotidase;protein_id=WP_012719556.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	401007	401081	.	+	.	ID=id187;Note=RAF_REPEAT170_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	401119	403779	.	-	.	ID=gene417;Name=RAF_RS02090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02090;old_locus_tag=RAF_ORF0375
NC_012633.1	Protein Homology	CDS	401119	403779	.	-	0	ID=cds407;Parent=gene417;Dbxref=Genbank:WP_041472006.1;Name=WP_041472006.1;gbkey=CDS;product=DNA mismatch repair protein MutS;protein_id=WP_041472006.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	403858	403932	.	+	.	ID=id188;Note=RAF_REPEAT171_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	403964	404398	.	-	.	ID=gene418;Name=RAF_RS02095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02095;old_locus_tag=RAF_ORF0376
NC_012633.1	Protein Homology	CDS	403964	404398	.	-	0	ID=cds408;Parent=gene418;Dbxref=Genbank:WP_012719558.1;Name=WP_012719558.1;gbkey=CDS;product=ribose 5-phosphate isomerase;protein_id=WP_012719558.1;transl_table=11
NC_012633.1	RefSeq	gene	404486	405124	.	+	.	ID=gene419;Name=RAF_RS02100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02100;old_locus_tag=RAF_ORF0377
NC_012633.1	Protein Homology	CDS	404486	405124	.	+	0	ID=cds409;Parent=gene419;Dbxref=Genbank:WP_049752725.1;Name=WP_049752725.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_049752725.1;transl_table=11
NC_012633.1	RefSeq	gene	405125	405817	.	+	.	ID=gene420;Name=RAF_RS02105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02105;old_locus_tag=RAF_ORF0378
NC_012633.1	Protein Homology	CDS	405125	405817	.	+	0	ID=cds410;Parent=gene420;Dbxref=Genbank:WP_012719560.1;Name=WP_012719560.1;gbkey=CDS;product=metal-dependent hydrolase;protein_id=WP_012719560.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	405822	405846	.	-	.	ID=id189;Note=RAF_REPEAT172_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	405908	406792	.	+	.	ID=gene421;Name=RAF_RS02110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02110;old_locus_tag=RAF_ORF0379
NC_012633.1	Protein Homology	CDS	405908	406792	.	+	0	ID=cds411;Parent=gene421;Dbxref=Genbank:WP_012719561.1;Name=WP_012719561.1;gbkey=CDS;product=FAD-dependent thymidylate synthase;protein_id=WP_012719561.1;transl_table=11
NC_012633.1	RefSeq	gene	406867	408201	.	+	.	ID=gene422;Name=tolB;gbkey=Gene;gene=tolB;gene_biotype=protein_coding;locus_tag=RAF_RS02115;old_locus_tag=RAF_ORF0380
NC_012633.1	Protein Homology	CDS	406867	408201	.	+	0	ID=cds412;Parent=gene422;Dbxref=Genbank:WP_012719562.1;Name=WP_012719562.1;Note=forms dimers%3B may be involved in cell envelope integrity%3B interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA;gbkey=CDS;gene=tolB;product=protein TolB;protein_id=WP_012719562.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	408245	408328	.	+	.	ID=id190;Note=RAF_REPEAT173_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	408340	409221	.	-	.	ID=gene423;Name=RAF_RS02120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02120;old_locus_tag=RAF_ORF0381
NC_012633.1	Protein Homology	CDS	408340	409221	.	-	0	ID=cds413;Parent=gene423;Dbxref=Genbank:WP_012719563.1;Name=WP_012719563.1;gbkey=CDS;product=DNA-directed RNA polymerase sigma-70 factor;protein_id=WP_012719563.1;transl_table=11
NC_012633.1	RefSeq	gene	409310	409876	.	+	.	ID=gene424;Name=RAF_RS02125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02125;old_locus_tag=RAF_ORF0382
NC_012633.1	Protein Homology	CDS	409310	409876	.	+	0	ID=cds414;Parent=gene424;Dbxref=Genbank:WP_004996151.1;Name=WP_004996151.1;gbkey=CDS;product=cytochrome c oxidase assembly protein CtaG;protein_id=WP_004996151.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	409846	409921	.	-	.	ID=id191;Note=RAF_REPEAT174_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	409974	410954	.	-	.	ID=gene425;Name=RAF_RS02130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02130;old_locus_tag=RAF_ORF0383
NC_012633.1	Protein Homology	CDS	409974	410954	.	-	0	ID=cds415;Parent=gene425;Dbxref=Genbank:WP_004996150.1;Name=WP_004996150.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004996150.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	411009	411081	.	-	.	ID=id192;Note=RAF_REPEAT175_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	411222	412319	.	+	.	ID=gene426;Name=RAF_RS02135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02135;old_locus_tag=RAF_ORF0384
NC_012633.1	Protein Homology	CDS	411222	412319	.	+	0	ID=cds416;Parent=gene426;Dbxref=Genbank:WP_012719564.1;Name=WP_012719564.1;gbkey=CDS;product=tRNA-specific 2-thiouridylase MnmA;protein_id=WP_012719564.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	412324	412381	.	-	.	ID=id193;Note=RAF_REPEAT176_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	412450	413847	.	+	.	ID=gene427;Name=RAF_RS02140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02140;old_locus_tag=RAF_ORF0385
NC_012633.1	Protein Homology	CDS	412450	413847	.	+	0	ID=cds417;Parent=gene427;Dbxref=Genbank:WP_012719565.1;Name=WP_012719565.1;gbkey=CDS;product=amino acid permease;protein_id=WP_012719565.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	413885	413957	.	+	.	ID=id194;Note=RAF_REPEAT177_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	413997	415241	.	+	.	ID=gene428;Name=RAF_RS02145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02145;old_locus_tag=RAF_ORF0386
NC_012633.1	Protein Homology	CDS	413997	415241	.	+	0	ID=cds418;Parent=gene428;Dbxref=Genbank:WP_012719566.1;Name=WP_012719566.1;gbkey=CDS;product=histidine--tRNA ligase;protein_id=WP_012719566.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	415395	415487	.	-	.	ID=id195;Note=RAF_REPEAT178_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	415674	415871	.	+	.	ID=gene429;Name=RAF_RS02150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02150;old_locus_tag=RAF_ORF0387
NC_012633.1	Protein Homology	CDS	415674	415871	.	+	0	ID=cds419;Parent=gene429;Dbxref=Genbank:WP_004996141.1;Name=WP_004996141.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_004996141.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	416317	416382	.	+	.	ID=id196;Note=RAF_REPEAT179_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	416552	416956	.	-	.	ID=gene430;Name=RAF_RS02155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02155;old_locus_tag=RAF_ORF0389
NC_012633.1	Protein Homology	CDS	416552	416956	.	-	0	ID=cds420;Parent=gene430;Dbxref=Genbank:WP_012719568.1;Name=WP_012719568.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719568.1;transl_table=11
NC_012633.1	RefSeq	gene	416978	417905	.	-	.	ID=gene431;Name=RAF_RS02160;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS02160;old_locus_tag=RAF_ORF0390;pseudo=true
NC_012633.1	Protein Homology	CDS	416978	417905	.	-	0	ID=cds421;Parent=gene431;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	repeat_region	418094	418177	.	-	.	ID=id197;Note=RAF_REPEAT180_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	418223	418451	.	-	.	ID=gene432;Name=RAF_RS02165;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS02165;pseudo=true
NC_012633.1	Protein Homology	CDS	418223	418451	.	-	0	ID=cds422;Parent=gene432;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	418495	418923	.	-	.	ID=gene433;Name=RAF_RS02170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02170;old_locus_tag=RAF_ORF0391
NC_012633.1	Protein Homology	CDS	418495	418923	.	-	0	ID=cds423;Parent=gene433;Dbxref=Genbank:WP_012719570.1;Name=WP_012719570.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719570.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	419204	419304	.	+	.	ID=id198;Note=RAF_REPEAT181_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	419425	420150	.	+	.	ID=gene434;Name=RAF_RS02175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02175;old_locus_tag=RAF_ORF0392
NC_012633.1	Protein Homology	CDS	419425	420150	.	+	0	ID=cds424;Parent=gene434;Dbxref=Genbank:WP_004996137.1;Name=WP_004996137.1;gbkey=CDS;product=biopolymer transporter ExbB;protein_id=WP_004996137.1;transl_table=11
NC_012633.1	RefSeq	gene	420150	420581	.	+	.	ID=gene435;Name=RAF_RS02180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02180;old_locus_tag=RAF_ORF0393
NC_012633.1	Protein Homology	CDS	420150	420581	.	+	0	ID=cds425;Parent=gene435;Dbxref=Genbank:WP_012719571.1;Name=WP_012719571.1;gbkey=CDS;product=biopolymer transporter ExbD;protein_id=WP_012719571.1;transl_table=11
NC_012633.1	RefSeq	gene	420571	421542	.	+	.	ID=gene436;Name=RAF_RS02185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02185;old_locus_tag=RAF_ORF0394
NC_012633.1	Protein Homology	CDS	420571	421542	.	+	0	ID=cds426;Parent=gene436;Dbxref=Genbank:WP_012719572.1;Name=WP_012719572.1;gbkey=CDS;product=periplasmic protein TonB%2C links inner and outer membranes;protein_id=WP_012719572.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	421597	421671	.	+	.	ID=id199;Note=RAF_REPEAT182_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	422516	423223	.	+	.	ID=gene437;Name=RAF_RS02190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02190;old_locus_tag=RAF_ORF0395
NC_012633.1	Protein Homology	CDS	422516	423223	.	+	0	ID=cds427;Parent=gene437;Dbxref=Genbank:WP_012719573.1;Name=WP_012719573.1;gbkey=CDS;product=guanosine polyphosphate pyrophosphohydrolase;protein_id=WP_012719573.1;transl_table=11
NC_012633.1	RefSeq	gene	423174	424490	.	-	.	ID=gene438;Name=RAF_RS02195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02195;old_locus_tag=RAF_ORF0396
NC_012633.1	Protein Homology	CDS	423174	424490	.	-	0	ID=cds428;Parent=gene438;Dbxref=Genbank:WP_012719574.1;Name=WP_012719574.1;gbkey=CDS;product=MFS transporter;protein_id=WP_012719574.1;transl_table=11
NC_012633.1	RefSeq	gene	424629	426164	.	-	.	ID=gene439;Name=RAF_RS02200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02200;old_locus_tag=RAF_ORF0397
NC_012633.1	Protein Homology	CDS	424629	426164	.	-	0	ID=cds429;Parent=gene439;Dbxref=Genbank:WP_012719575.1;Name=WP_012719575.1;gbkey=CDS;product=hemolysin secretion protein D;protein_id=WP_012719575.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	426211	426276	.	-	.	ID=id200;Note=RAF_REPEAT183_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	426349	428103	.	-	.	ID=gene440;Name=RAF_RS02205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02205;old_locus_tag=RAF_ORF0398
NC_012633.1	Protein Homology	CDS	426349	428103	.	-	0	ID=cds430;Parent=gene440;Dbxref=Genbank:WP_012719576.1;Name=WP_012719576.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_012719576.1;transl_table=11
NC_012633.1	RefSeq	gene	428114	429130	.	-	.	ID=gene441;Name=RAF_RS02210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02210;old_locus_tag=RAF_ORF0399
NC_012633.1	Protein Homology	CDS	428114	429130	.	-	0	ID=cds431;Parent=gene441;Dbxref=Genbank:WP_012719577.1;Name=WP_012719577.1;gbkey=CDS;product=aspartate-semialdehyde dehydrogenase;protein_id=WP_012719577.1;transl_table=11
NC_012633.1	RefSeq	gene	429123	429482	.	-	.	ID=gene442;Name=RAF_RS02215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02215;old_locus_tag=RAF_ORF0400
NC_012633.1	Protein Homology	CDS	429123	429482	.	-	0	ID=cds432;Parent=gene442;Dbxref=Genbank:WP_012150637.1;Name=WP_012150637.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012150637.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	429527	429619	.	-	.	ID=id201;Note=RAF_REPEAT184_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	429673	430026	.	-	.	ID=gene443;Name=RAF_RS02220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02220;old_locus_tag=RAF_ORF0401
NC_012633.1	Protein Homology	CDS	429673	430026	.	-	0	ID=cds433;Parent=gene443;Dbxref=Genbank:WP_012719578.1;Name=WP_012719578.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719578.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	430098	430203	.	+	.	ID=id202;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	430099	430223	.	-	.	ID=id203;Note=RAF_REPEAT185_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	430290	430838	.	+	.	ID=gene444;Name=RAF_RS02225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02225;old_locus_tag=RAF_ORF0402
NC_012633.1	Protein Homology	CDS	430290	430838	.	+	0	ID=cds434;Parent=gene444;Dbxref=Genbank:WP_004996101.1;Name=WP_004996101.1;gbkey=CDS;product=ATP-dependent protease subunit HslV;protein_id=WP_004996101.1;transl_table=11
NC_012633.1	RefSeq	gene	430835	432187	.	+	.	ID=gene445;Name=RAF_RS02230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02230;old_locus_tag=RAF_ORF0403
NC_012633.1	Protein Homology	CDS	430835	432187	.	+	0	ID=cds435;Parent=gene445;Dbxref=Genbank:WP_012719579.1;Name=WP_012719579.1;gbkey=CDS;product=ATP-dependent protease ATPase subunit HslU;protein_id=WP_012719579.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	432230	432305	.	-	.	ID=id204;Note=RAF_REPEAT186_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	432431	432920	.	+	.	ID=gene446;Name=RAF_RS02235;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS02235;pseudo=true
NC_012633.1	Protein Homology	CDS	432431	432920	.	+	0	ID=cds436;Parent=gene446;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	432920	433185	.	+	.	ID=gene447;Name=RAF_RS02240;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS02240;pseudo=true
NC_012633.1	Protein Homology	CDS	432920	433185	.	+	0	ID=cds437;Parent=gene447;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	433363	433869	.	+	.	ID=gene448;Name=RAF_RS02245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02245
NC_012633.1	Protein Homology	CDS	433363	433869	.	+	0	ID=cds438;Parent=gene448;Dbxref=Genbank:WP_041471832.1;Name=WP_041471832.1;gbkey=CDS;product=chemotaxis protein CheB;protein_id=WP_041471832.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	433804	433928	.	+	.	ID=id205;Note=RAF_REPEAT187_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	434176	434361	.	+	.	ID=gene449;Name=RAF_RS02250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02250
NC_012633.1	Protein Homology	CDS	434176	434361	.	+	0	ID=cds439;Parent=gene449;Dbxref=Genbank:WP_041471833.1;Name=WP_041471833.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471833.1;transl_table=11
NC_012633.1	RefSeq	gene	434337	434915	.	+	.	ID=gene450;Name=RAF_RS02255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02255;old_locus_tag=RAF_ORF0407
NC_012633.1	Protein Homology	CDS	434337	434915	.	+	0	ID=cds440;Parent=gene450;Dbxref=Genbank:WP_012719580.1;Name=WP_012719580.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719580.1;transl_table=11
NC_012633.1	RefSeq	gene	434925	436265	.	+	.	ID=gene451;Name=RAF_RS02260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02260;old_locus_tag=RAF_ORF0408
NC_012633.1	Protein Homology	CDS	434925	436265	.	+	0	ID=cds441;Parent=gene451;Dbxref=Genbank:WP_012719581.1;Name=WP_012719581.1;gbkey=CDS;product=lipid-A-disaccharide synthase;protein_id=WP_012719581.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	436062	436177	.	+	.	ID=id206;Note=RAF_REPEAT188_RPE-3%2C RPE-3 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	436262	436534	.	-	.	ID=gene452;Name=RAF_RS02265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02265;old_locus_tag=RAF_ORF0409
NC_012633.1	Protein Homology	CDS	436262	436534	.	-	0	ID=cds442;Parent=gene452;Dbxref=Genbank:WP_004996088.1;Name=WP_004996088.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004996088.1;transl_table=11
NC_012633.1	RefSeq	gene	436881	437900	.	+	.	ID=gene453;Name=RAF_RS02270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02270;old_locus_tag=RAF_ORF0410
NC_012633.1	Protein Homology	CDS	436881	437900	.	+	0	ID=cds443;Parent=gene453;Dbxref=Genbank:WP_010977088.1;Name=WP_010977088.1;gbkey=CDS;product=aminodeoxychorismate lyase;protein_id=WP_010977088.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	437890	438013	.	-	.	ID=id207;Note=RAF_REPEAT189_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	438040	438351	.	+	.	ID=gene454;Name=cyaY;gbkey=Gene;gene=cyaY;gene_biotype=protein_coding;locus_tag=RAF_RS02275;old_locus_tag=RAF_ORF0411
NC_012633.1	Protein Homology	CDS	438040	438351	.	+	0	ID=cds444;Parent=gene454;Dbxref=Genbank:WP_010977089.1;Name=WP_010977089.1;Note=defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease%3B based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly;gbkey=CDS;gene=cyaY;product=protein CyaY;protein_id=WP_010977089.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	438335	438459	.	-	.	ID=id208;Note=RAF_REPEAT190_RPE-5%2C RPE-5 Full;gbkey=repeat_region;gene=cyaY
NC_012633.1	RefSeq	gene	438831	439058	.	+	.	ID=gene455;Name=RAF_RS07070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07070
NC_012633.1	Protein Homology	CDS	438831	439058	.	+	0	ID=cds445;Parent=gene455;Dbxref=Genbank:WP_049752726.1;Name=WP_049752726.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_049752726.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	439291	439337	.	+	.	ID=id209;Note=RAF_REPEAT191_RPE-7%2C RPE-7 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	440123	440674	.	+	.	ID=gene456;Name=RAF_RS02285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02285
NC_012633.1	Protein Homology	CDS	440123	440674	.	+	0	ID=cds446;Parent=gene456;Dbxref=Genbank:WP_012719584.1;Name=WP_012719584.1;gbkey=CDS;product=peptidase;protein_id=WP_012719584.1;transl_table=11
NC_012633.1	RefSeq	gene	441259	441453	.	+	.	ID=gene457;Name=RAF_RS02290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02290
NC_012633.1	Protein Homology	CDS	441259	441453	.	+	0	ID=cds447;Parent=gene457;Dbxref=Genbank:WP_041472009.1;Name=WP_041472009.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041472009.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	441671	441804	.	-	.	ID=id210;Note=RAF_REPEAT192_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	441811	443154	.	-	.	ID=gene458;Name=RAF_RS02295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02295;old_locus_tag=RAF_ORF0416
NC_012633.1	Protein Homology	CDS	441811	443154	.	-	0	ID=cds448;Parent=gene458;Dbxref=Genbank:WP_012719586.1;Name=WP_012719586.1;gbkey=CDS;product=glutamyl-tRNA synthetase;protein_id=WP_012719586.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	443174	443253	.	-	.	ID=id211;Note=RAF_REPEAT193_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	443263	445593	.	-	.	ID=gene459;Name=RAF_RS02300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02300;old_locus_tag=RAF_ORF0417
NC_012633.1	Protein Homology	CDS	443263	445593	.	-	0	ID=cds449;Parent=gene459;Dbxref=Genbank:WP_012719587.1;Name=WP_012719587.1;gbkey=CDS;product=DNA topoisomerase I;protein_id=WP_012719587.1;transl_table=11
NC_012633.1	RefSeq	gene	445622	446059	.	-	.	ID=gene460;Name=RAF_RS02305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02305
NC_012633.1	Protein Homology	CDS	445622	446059	.	-	0	ID=cds450;Parent=gene460;Dbxref=Genbank:WP_041471834.1;Name=WP_041471834.1;gbkey=CDS;product=DNA processing protein;protein_id=WP_041471834.1;transl_table=11
NC_012633.1	RefSeq	gene	446139	446387	.	-	.	ID=gene461;Name=RAF_RS02310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02310
NC_012633.1	Protein Homology	CDS	446139	446387	.	-	0	ID=cds451;Parent=gene461;Dbxref=Genbank:WP_014410573.1;Name=WP_014410573.1;gbkey=CDS;product=DNA processing protein DprA;protein_id=WP_014410573.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	446783	446922	.	-	.	ID=id212;Note=RAF_REPEAT194_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	446994	447596	.	-	.	ID=gene462;Name=RAF_RS02315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02315;old_locus_tag=RAF_ORF0420
NC_012633.1	Protein Homology	CDS	446994	447596	.	-	0	ID=cds452;Parent=gene462;Dbxref=Genbank:WP_012150652.1;Name=WP_012150652.1;gbkey=CDS;product=peroxidase;protein_id=WP_012150652.1;transl_table=11
NC_012633.1	RefSeq	gene	447678	448616	.	-	.	ID=gene463;Name=RAF_RS02320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02320;old_locus_tag=RAF_ORF0421
NC_012633.1	Protein Homology	CDS	447678	448616	.	-	0	ID=cds453;Parent=gene463;Dbxref=Genbank:WP_004996064.1;Name=WP_004996064.1;gbkey=CDS;product=stomatin 2;protein_id=WP_004996064.1;transl_table=11
NC_012633.1	RefSeq	gene	448690	448914	.	-	.	ID=gene464;Name=RAF_RS02325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02325
NC_012633.1	Protein Homology	CDS	448690	448914	.	-	0	ID=cds454;Parent=gene464;Dbxref=Genbank:WP_041471835.1;Name=WP_041471835.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471835.1;transl_table=11
NC_012633.1	RefSeq	gene	448981	450549	.	-	.	ID=gene465;Name=RAF_RS02330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02330;old_locus_tag=RAF_ORF0422
NC_012633.1	Protein Homology	CDS	448981	450549	.	-	0	ID=cds455;Parent=gene465;Dbxref=Genbank:WP_012719588.1;Name=WP_012719588.1;gbkey=CDS;product=membrane protein;protein_id=WP_012719588.1;transl_table=11
NC_012633.1	RefSeq	gene	450585	451049	.	+	.	ID=gene466;Name=RAF_RS02335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02335;old_locus_tag=RAF_ORF0423
NC_012633.1	Protein Homology	CDS	450585	451049	.	+	0	ID=cds456;Parent=gene466;Dbxref=Genbank:WP_012719589.1;Name=WP_012719589.1;gbkey=CDS;product=Holliday junction DNA helicase;protein_id=WP_012719589.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	451097	451232	.	+	.	ID=id213;Note=RAF_REPEAT195_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	451316	451477	.	+	.	ID=gene467;Name=RAF_RS02340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02340;old_locus_tag=RAF_ORF0424
NC_012633.1	Protein Homology	CDS	451316	451477	.	+	0	ID=cds457;Parent=gene467;Dbxref=Genbank:WP_041472010.1;Name=WP_041472010.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041472010.1;transl_table=11
NC_012633.1	RefSeq	gene	451461	451550	.	+	.	ID=gene468;Name=RAF_RS02345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02345
NC_012633.1	Protein Homology	CDS	451461	451550	.	+	0	ID=cds458;Parent=gene468;Dbxref=Genbank:WP_012150658.1;Name=WP_012150658.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012150658.1;transl_table=11
NC_012633.1	RefSeq	gene	451648	452502	.	+	.	ID=gene469;Name=RAF_RS02350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02350;old_locus_tag=RAF_ORF0425
NC_012633.1	Protein Homology	CDS	451648	452502	.	+	0	ID=cds459;Parent=gene469;Dbxref=Genbank:WP_012719591.1;Name=WP_012719591.1;gbkey=CDS;product=dTDP-4-dehydrorhamnose reductase;protein_id=WP_012719591.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	452562	452617	.	-	.	ID=id214;Note=RAF_REPEAT196_RPE-4%2C RPE-4 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	452685	453710	.	+	.	ID=gene470;Name=RAF_RS02355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02355;old_locus_tag=RAF_ORF0426
NC_012633.1	Protein Homology	CDS	452685	453710	.	+	0	ID=cds460;Parent=gene470;Dbxref=Genbank:WP_012719592.1;Name=WP_012719592.1;gbkey=CDS;product=UDP-glucose 4-epimerase;protein_id=WP_012719592.1;transl_table=11
NC_012633.1	RefSeq	gene	453703	454836	.	+	.	ID=gene471;Name=RAF_RS02360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02360;old_locus_tag=RAF_ORF0427
NC_012633.1	Protein Homology	CDS	453703	454836	.	+	0	ID=cds461;Parent=gene471;Dbxref=Genbank:WP_012719593.1;Name=WP_012719593.1;gbkey=CDS;product=UDP-N-acetylglucosamine 2-epimerase;protein_id=WP_012719593.1;transl_table=11
NC_012633.1	RefSeq	gene	454805	456142	.	+	.	ID=gene472;Name=RAF_RS02365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02365;old_locus_tag=RAF_ORF0428
NC_012633.1	Protein Homology	CDS	454805	456142	.	+	0	ID=cds462;Parent=gene472;Dbxref=Genbank:WP_049752705.1;Name=WP_049752705.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_049752705.1;transl_table=11
NC_012633.1	RefSeq	gene	456227	456644	.	+	.	ID=gene473;Name=RAF_RS02370;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS02370;pseudo=true
NC_012633.1	Protein Homology	CDS	456227	456644	.	+	0	ID=cds463;Parent=gene473;exception=annotated by transcript or proteomic data;gbkey=CDS;product=methyltransferase;pseudo=true;transl_except=(pos:456453..456455%2Caa:Other);transl_table=11
NC_012633.1	RefSeq	gene	457080	458894	.	+	.	ID=gene474;Name=RAF_RS02375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02375;old_locus_tag=RAF_ORF0430
NC_012633.1	Protein Homology	CDS	457080	458894	.	+	0	ID=cds464;Parent=gene474;Dbxref=Genbank:WP_012719596.1;Name=WP_012719596.1;gbkey=CDS;product=glycosyltransferase;protein_id=WP_012719596.1;transl_table=11
NC_012633.1	RefSeq	gene	458899	459894	.	-	.	ID=gene475;Name=RAF_RS02380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02380;old_locus_tag=RAF_ORF0431
NC_012633.1	Protein Homology	CDS	458899	459894	.	-	0	ID=cds465;Parent=gene475;Dbxref=Genbank:WP_041471836.1;Name=WP_041471836.1;gbkey=CDS;product=RND transporter;protein_id=WP_041471836.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	459921	460018	.	-	.	ID=id215;Note=RAF_REPEAT197_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	459984	460778	.	-	.	ID=gene476;Name=RAF_RS02385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02385;old_locus_tag=RAF_ORF0432
NC_012633.1	Protein Homology	CDS	459984	460778	.	-	0	ID=cds466;Parent=gene476;Dbxref=Genbank:WP_012719598.1;Name=WP_012719598.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719598.1;transl_table=11
NC_012633.1	RefSeq	gene	460788	461555	.	-	.	ID=gene477;Name=RAF_RS02390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02390;old_locus_tag=RAF_ORF0433
NC_012633.1	Protein Homology	CDS	460788	461555	.	-	0	ID=cds467;Parent=gene477;Dbxref=Genbank:WP_012719599.1;Name=WP_012719599.1;gbkey=CDS;product=hydrolase;protein_id=WP_012719599.1;transl_table=11
NC_012633.1	RefSeq	gene	461588	462760	.	+	.	ID=gene478;Name=RAF_RS02395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02395;old_locus_tag=RAF_ORF0434
NC_012633.1	Protein Homology	CDS	461588	462760	.	+	0	ID=cds468;Parent=gene478;Dbxref=Genbank:WP_012719600.1;Name=WP_012719600.1;gbkey=CDS;product=capsular polysaccharide biosynthesis protein CapM;protein_id=WP_012719600.1;transl_table=11
NC_012633.1	RefSeq	gene	463632	463850	.	-	.	ID=gene479;Name=RAF_RS02400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02400
NC_012633.1	Protein Homology	CDS	463632	463850	.	-	0	ID=cds469;Parent=gene479;Dbxref=Genbank:WP_049752706.1;Name=WP_049752706.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_049752706.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	464942	464987	.	-	.	ID=id216;Note=RAF_REPEAT198_RPE-4%2C RPE-4 Part;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	465029	465124	.	+	.	ID=id217;Note=RAF_REPEAT199_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	465262	465879	.	-	.	ID=gene480;Name=RAF_RS02405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02405;old_locus_tag=RAF_ORF0435
NC_012633.1	Protein Homology	CDS	465262	465879	.	-	0	ID=cds470;Parent=gene480;Dbxref=Genbank:WP_010977111.1;Name=WP_010977111.1;gbkey=CDS;product=30S ribosomal protein S4;protein_id=WP_010977111.1;transl_table=11
NC_012633.1	RefSeq	gene	466004	466921	.	+	.	ID=gene481;Name=RAF_RS02410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02410;old_locus_tag=RAF_ORF0436
NC_012633.1	Protein Homology	CDS	466004	466921	.	+	0	ID=cds471;Parent=gene481;Dbxref=Genbank:WP_010977112.1;Name=WP_010977112.1;gbkey=CDS;product=protoheme IX farnesyltransferase;protein_id=WP_010977112.1;transl_table=11
NC_012633.1	RefSeq	gene	467203	467956	.	-	.	ID=gene482;Name=RAF_RS02415;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS02415;old_locus_tag=RAF_ORF0437;pseudo=true
NC_012633.1	Protein Homology	CDS	467203	467956	.	-	0	ID=cds472;Parent=gene482;exception=annotated by transcript or proteomic data;gbkey=CDS;product=lyase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	468072	468280	.	+	.	ID=gene483;Name=RAF_RS02420;end_range=468280,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS02420;partial=true;pseudo=true
NC_012633.1	Protein Homology	CDS	468072	468280	.	+	0	ID=cds473;Parent=gene483;end_range=468280,.;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	468436	468795	.	+	.	ID=gene484;Name=RAF_RS02425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02425;old_locus_tag=RAF_ORF0438
NC_012633.1	Protein Homology	CDS	468436	468795	.	+	0	ID=cds474;Parent=gene484;Dbxref=Genbank:WP_012719602.1;Name=WP_012719602.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719602.1;transl_table=11
NC_012633.1	RefSeq	gene	468936	471428	.	-	.	ID=gene485;Name=RAF_RS02430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02430;old_locus_tag=RAF_ORF0439
NC_012633.1	Protein Homology	CDS	468936	471428	.	-	0	ID=cds475;Parent=gene485;Dbxref=Genbank:WP_041472011.1;Name=WP_041472011.1;gbkey=CDS;product=membrane protein;protein_id=WP_041472011.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	471581	471679	.	-	.	ID=id218;Note=RAF_REPEAT200_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	471738	472235	.	-	.	ID=gene486;Name=RAF_RS02435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02435;old_locus_tag=RAF_ORF0440
NC_012633.1	Protein Homology	CDS	471738	472235	.	-	0	ID=cds476;Parent=gene486;Dbxref=Genbank:WP_012719604.1;Name=WP_012719604.1;gbkey=CDS;product=ribosome maturation factor RimM;protein_id=WP_012719604.1;transl_table=11
NC_012633.1	RefSeq	gene	472298	474928	.	+	.	ID=gene487;Name=RAF_RS02440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02440;old_locus_tag=RAF_ORF0441
NC_012633.1	Protein Homology	CDS	472298	474928	.	+	0	ID=cds477;Parent=gene487;Dbxref=Genbank:WP_012719605.1;Name=WP_012719605.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719605.1;transl_table=11
NC_012633.1	RefSeq	gene	474942	475184	.	+	.	ID=gene488;Name=RAF_RS02445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02445;old_locus_tag=RAF_ORF0442
NC_012633.1	Protein Homology	CDS	474942	475184	.	+	0	ID=cds478;Parent=gene488;Dbxref=Genbank:WP_012719606.1;Name=WP_012719606.1;gbkey=CDS;product=exodeoxyribonuclease 7 small subunit;protein_id=WP_012719606.1;transl_table=11
NC_012633.1	RefSeq	gene	475222	475524	.	+	.	ID=gene489;Name=RAF_RS02450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02450
NC_012633.1	Protein Homology	CDS	475222	475524	.	+	0	ID=cds479;Parent=gene489;Dbxref=Genbank:WP_041471837.1;Name=WP_041471837.1;gbkey=CDS;product=toxin;protein_id=WP_041471837.1;transl_table=11
NC_012633.1	RefSeq	gene	475514	475798	.	+	.	ID=gene490;Name=RAF_RS02455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02455
NC_012633.1	Protein Homology	CDS	475514	475798	.	+	0	ID=cds480;Parent=gene490;Dbxref=Genbank:WP_041471838.1;Name=WP_041471838.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471838.1;transl_table=11
NC_012633.1	RefSeq	gene	475880	476605	.	+	.	ID=gene491;Name=RAF_RS02460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02460;old_locus_tag=RAF_ORF0445
NC_012633.1	Protein Homology	CDS	475880	476605	.	+	0	ID=cds481;Parent=gene491;Dbxref=Genbank:WP_012719607.1;Name=WP_012719607.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719607.1;transl_table=11
NC_012633.1	RefSeq	gene	476571	477122	.	-	.	ID=gene492;Name=RAF_RS02465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02465;old_locus_tag=RAF_ORF0446
NC_012633.1	Protein Homology	CDS	476571	477122	.	-	0	ID=cds482;Parent=gene492;Dbxref=Genbank:WP_012719608.1;Name=WP_012719608.1;gbkey=CDS;product=3-methyladenine DNA glycosylase;protein_id=WP_012719608.1;transl_table=11
NC_012633.1	RefSeq	gene	477657	478160	.	-	.	ID=gene493;Name=RAF_RS02470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02470;old_locus_tag=RAF_ORF0448
NC_012633.1	Protein Homology	CDS	477657	478160	.	-	0	ID=cds483;Parent=gene493;Dbxref=Genbank:WP_012719610.1;Name=WP_012719610.1;gbkey=CDS;product=NADH dehydrogenase subunit E;protein_id=WP_012719610.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	478185	478258	.	-	.	ID=id219;Note=RAF_REPEAT201_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	478484	478548	.	-	.	ID=id220;Note=RAF_REPEAT202_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	478586	479761	.	-	.	ID=gene494;Name=RAF_RS02475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02475;old_locus_tag=RAF_ORF0449
NC_012633.1	Protein Homology	CDS	478586	479761	.	-	0	ID=cds484;Parent=gene494;Dbxref=Genbank:WP_014273401.1;Name=WP_014273401.1;Note=Catalyzes the transfer of electrons from NADH to quinone;gbkey=CDS;product=NADH-quinone oxidoreductase subunit D;protein_id=WP_014273401.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	479775	479853	.	-	.	ID=id221;Note=RAF_REPEAT203_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	479858	479894	.	-	.	ID=id222;Note=RAF_REPEAT204_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	479860	480588	.	-	.	ID=gene495;Name=RAF_RS02480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02480;old_locus_tag=RAF_ORF0450
NC_012633.1	Protein Homology	CDS	479860	480588	.	-	0	ID=cds485;Parent=gene495;Dbxref=Genbank:WP_012719612.1;Name=WP_012719612.1;gbkey=CDS;product=NADH-quinone oxidoreductase subunit C;protein_id=WP_012719612.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	480286	480389	.	-	.	ID=id223;Note=RAF_REPEAT205_RPE-2%2C RPE-2 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	480566	481090	.	-	.	ID=gene496;Name=RAF_RS02485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02485;old_locus_tag=RAF_ORF0451
NC_012633.1	Protein Homology	CDS	480566	481090	.	-	0	ID=cds486;Parent=gene496;Dbxref=Genbank:WP_012719613.1;Name=WP_012719613.1;Note=The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen;gbkey=CDS;product=NADH-quinone oxidoreductase subunit B;protein_id=WP_012719613.1;transl_table=11
NC_012633.1	RefSeq	gene	481095	481466	.	-	.	ID=gene497;Name=RAF_RS02490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02490;old_locus_tag=RAF_ORF0452
NC_012633.1	Protein Homology	CDS	481095	481466	.	-	0	ID=cds487;Parent=gene497;Dbxref=Genbank:WP_012737002.1;Name=WP_012737002.1;Note=Catalyzes the transfer of electrons from NADH to quinone;gbkey=CDS;product=NADH-quinone oxidoreductase subunit A;protein_id=WP_012737002.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	481489	481556	.	-	.	ID=id224;Note=RAF_REPEAT206_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	481624	482859	.	-	.	ID=gene498;Name=RAF_RS02495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02495;old_locus_tag=RAF_ORF0453
NC_012633.1	Protein Homology	CDS	481624	482859	.	-	0	ID=cds488;Parent=gene498;Dbxref=Genbank:WP_012719614.1;Name=WP_012719614.1;gbkey=CDS;product=polysaccharide polymerase;protein_id=WP_012719614.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	482620	482696	.	+	.	ID=id225;Note=RAF_REPEAT207_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	482860	483333	.	-	.	ID=gene499;Name=RAF_RS02500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02500;old_locus_tag=RAF_ORF0454
NC_012633.1	Protein Homology	CDS	482860	483333	.	-	0	ID=cds489;Parent=gene499;Dbxref=Genbank:WP_012719615.1;Name=WP_012719615.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719615.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	483434	483500	.	+	.	ID=id226;Note=RAF_REPEAT208_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	483996	484301	.	+	.	ID=gene500;Name=RAF_RS02505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02505
NC_012633.1	Protein Homology	CDS	483996	484301	.	+	0	ID=cds490;Parent=gene500;Dbxref=Genbank:WP_041471839.1;Name=WP_041471839.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471839.1;transl_table=11
NC_012633.1	RefSeq	gene	484301	484854	.	+	.	ID=gene501;Name=RAF_RS02510;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS02510;pseudo=true
NC_012633.1	Protein Homology	CDS	484301	484854	.	+	0	ID=cds491;Parent=gene501;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	repeat_region	484948	485026	.	+	.	ID=id227;Note=RAF_REPEAT209_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	485051	485125	.	+	.	ID=gene502;Name=RAF_RS02515;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS02515;old_locus_tag=RAF_RNA11
NC_012633.1	tRNAscan-SE	tRNA	485051	485125	.	+	.	ID=rna10;Parent=gene502;anticodon=(pos:485083..485085);gbkey=tRNA;product=tRNA-Cys
NC_012633.1	tRNAscan-SE	exon	485051	485125	.	+	.	ID=id228;Parent=rna10;anticodon=(pos:485083..485085);gbkey=tRNA;product=tRNA-Cys
NC_012633.1	RefSeq	gene	485147	486067	.	+	.	ID=gene503;Name=RAF_RS02520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02520;old_locus_tag=RAF_ORF0459
NC_012633.1	Protein Homology	CDS	485147	486067	.	+	0	ID=cds492;Parent=gene503;Dbxref=Genbank:WP_004995969.1;Name=WP_004995969.1;gbkey=CDS;product=tyrosine recombinase XerD;protein_id=WP_004995969.1;transl_table=11
NC_012633.1	RefSeq	gene	486151	487170	.	+	.	ID=gene504;Name=RAF_RS02525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02525;old_locus_tag=RAF_ORF0460
NC_012633.1	Protein Homology	CDS	486151	487170	.	+	0	ID=cds493;Parent=gene504;Dbxref=Genbank:WP_012719616.1;Name=WP_012719616.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719616.1;transl_table=11
NC_012633.1	RefSeq	gene	487282	488445	.	+	.	ID=gene505;Name=RAF_RS02530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02530;old_locus_tag=RAF_ORF0461
NC_012633.1	Protein Homology	CDS	487282	488445	.	+	0	ID=cds494;Parent=gene505;Dbxref=Genbank:WP_041471840.1;Name=WP_041471840.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471840.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	488477	488577	.	+	.	ID=id229;Note=RAF_REPEAT210_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	488632	489418	.	-	.	ID=gene506;Name=RAF_RS02535;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS02535;old_locus_tag=RAF_ORF0462;pseudo=true
NC_012633.1	Protein Homology	CDS	488632	489418	.	-	0	ID=cds495;Parent=gene506;Note=Catalyzes a key regulatory step in fatty acid biosynthesis;exception=annotated by transcript or proteomic data;gbkey=CDS;product=enoyl-ACP reductase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	489494	491008	.	+	.	ID=gene507;Name=RAF_RS02540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02540;old_locus_tag=RAF_ORF0463
NC_012633.1	Protein Homology	CDS	489494	491008	.	+	0	ID=cds496;Parent=gene507;Dbxref=Genbank:WP_012719619.1;Name=WP_012719619.1;gbkey=CDS;product=apolipoprotein N-acyltransferase;protein_id=WP_012719619.1;transl_table=11
NC_012633.1	RefSeq	gene	491186	491401	.	-	.	ID=gene508;Name=RAF_RS02545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02545
NC_012633.1	Protein Homology	CDS	491186	491401	.	-	0	ID=cds497;Parent=gene508;Dbxref=Genbank:WP_016728081.1;Name=WP_016728081.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_016728081.1;transl_table=11
NC_012633.1	RefSeq	gene	491698	492501	.	+	.	ID=gene509;Name=RAF_RS02550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02550;old_locus_tag=RAF_ORF0464
NC_012633.1	Protein Homology	CDS	491698	492501	.	+	0	ID=cds498;Parent=gene509;Dbxref=Genbank:WP_012719620.1;Name=WP_012719620.1;gbkey=CDS;product=N-acetylmuramoyl-L-alanine amidase;protein_id=WP_012719620.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	492616	492715	.	+	.	ID=id230;Note=RAF_REPEAT211_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	492953	493870	.	+	.	ID=gene510;Name=RAF_RS02555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02555;old_locus_tag=RAF_ORF0465
NC_012633.1	Protein Homology	CDS	492953	493870	.	+	0	ID=cds499;Parent=gene510;Dbxref=Genbank:WP_012719621.1;Name=WP_012719621.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719621.1;transl_table=11
NC_012633.1	RefSeq	gene	493875	494714	.	+	.	ID=gene511;Name=RAF_RS02560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02560;old_locus_tag=RAF_ORF0466
NC_012633.1	Protein Homology	CDS	493875	494714	.	+	0	ID=cds500;Parent=gene511;Dbxref=Genbank:WP_004995960.1;Name=WP_004995960.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004995960.1;transl_table=11
NC_012633.1	RefSeq	gene	494711	495433	.	+	.	ID=gene512;Name=RAF_RS02565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02565;old_locus_tag=RAF_ORF0467
NC_012633.1	Protein Homology	CDS	494711	495433	.	+	0	ID=cds501;Parent=gene512;Dbxref=Genbank:WP_012719623.1;Name=WP_012719623.1;gbkey=CDS;product=methionine ABC transporter ATP-binding protein;protein_id=WP_012719623.1;transl_table=11
NC_012633.1	RefSeq	gene	495513	495929	.	-	.	ID=gene513;Name=RAF_RS02570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02570;old_locus_tag=RAF_ORF0468
NC_012633.1	Protein Homology	CDS	495513	495929	.	-	0	ID=cds502;Parent=gene513;Dbxref=Genbank:WP_041471841.1;Name=WP_041471841.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471841.1;transl_table=11
NC_012633.1	RefSeq	gene	495953	496367	.	-	.	ID=gene514;Name=RAF_RS02575;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS02575;pseudo=true
NC_012633.1	Protein Homology	CDS	495953	496367	.	-	0	ID=cds503;Parent=gene514;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	496578	496772	.	+	.	ID=gene515;Name=RAF_RS02580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02580
NC_012633.1	Protein Homology	CDS	496578	496772	.	+	0	ID=cds504;Parent=gene515;Dbxref=Genbank:WP_041471842.1;Name=WP_041471842.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471842.1;transl_table=11
NC_012633.1	RefSeq	gene	496992	497087	.	-	.	ID=gene516;Name=RAF_RS02585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02585
NC_012633.1	Protein Homology	CDS	496992	497087	.	-	0	ID=cds505;Parent=gene516;Dbxref=Genbank:WP_014410611.1;Name=WP_014410611.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_014410611.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	497804	497861	.	+	.	ID=id231;Note=RAF_REPEAT212_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	497941	499509	.	+	.	ID=gene517;Name=lysK;gbkey=Gene;gene=lysK;gene_biotype=protein_coding;locus_tag=RAF_RS02590;old_locus_tag=RAF_ORF0472
NC_012633.1	Protein Homology	CDS	497941	499509	.	+	0	ID=cds506;Parent=gene517;Dbxref=Genbank:WP_012719626.1;Name=WP_012719626.1;Note=class I%3B LysRS1%3B catalyzes a two-step reaction%2C first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine;gbkey=CDS;gene=lysK;product=lysine--tRNA ligase;protein_id=WP_012719626.1;transl_table=11
NC_012633.1	RefSeq	gene	499643	500575	.	+	.	ID=gene518;Name=RAF_RS02595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02595;old_locus_tag=RAF_ORF0473
NC_012633.1	Protein Homology	CDS	499643	500575	.	+	0	ID=cds507;Parent=gene518;Dbxref=Genbank:WP_012719627.1;Name=WP_012719627.1;gbkey=CDS;product=permease;protein_id=WP_012719627.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	500609	500675	.	+	.	ID=id232;Note=RAF_REPEAT213_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	500715	503018	.	+	.	ID=gene519;Name=RAF_RS02600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02600;old_locus_tag=RAF_ORF0474
NC_012633.1	Protein Homology	CDS	500715	503018	.	+	0	ID=cds508;Parent=gene519;Dbxref=Genbank:WP_012719628.1;Name=WP_012719628.1;Note=NAD-dependent%3B catalyzes the oxidative decarboxylation of malate to form pyruvate%3B does not decarboxylate oxaloacetate;gbkey=CDS;product=malic enzyme;protein_id=WP_012719628.1;transl_table=11
NC_012633.1	RefSeq	gene	503604	503912	.	+	.	ID=gene520;Name=RAF_RS02605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02605
NC_012633.1	Protein Homology	CDS	503604	503912	.	+	0	ID=cds509;Parent=gene520;Dbxref=Genbank:WP_041471843.1;Name=WP_041471843.1;gbkey=CDS;product=transporter;protein_id=WP_041471843.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	503997	504131	.	+	.	ID=id233;Note=RAF_REPEAT214_RPE-8%2C RPE-8 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	504128	504514	.	-	.	ID=gene521;Name=RAF_RS02610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02610;old_locus_tag=RAF_ORF0475
NC_012633.1	Protein Homology	CDS	504128	504514	.	-	0	ID=cds510;Parent=gene521;Dbxref=Genbank:WP_041471844.1;Name=WP_041471844.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471844.1;transl_table=11
NC_012633.1	RefSeq	gene	504507	504755	.	-	.	ID=gene522;Name=RAF_RS02615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02615;old_locus_tag=RAF_ORF0476
NC_012633.1	Protein Homology	CDS	504507	504755	.	-	0	ID=cds511;Parent=gene522;Dbxref=Genbank:WP_010977150.1;Name=WP_010977150.1;gbkey=CDS;product=AbrB family transcriptional regulator;protein_id=WP_010977150.1;transl_table=11
NC_012633.1	RefSeq	gene	504992	506209	.	+	.	ID=gene523;Name=RAF_RS02620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02620;old_locus_tag=RAF_ORF0477
NC_012633.1	Protein Homology	CDS	504992	506209	.	+	0	ID=cds512;Parent=gene523;Dbxref=Genbank:WP_012719630.1;Name=WP_012719630.1;gbkey=CDS;product=MFS transporter;protein_id=WP_012719630.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	506242	506362	.	+	.	ID=id234;Note=RAF_REPEAT215_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	506411	506596	.	-	.	ID=gene524;Name=RAF_RS02625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02625
NC_012633.1	Protein Homology	CDS	506411	506596	.	-	0	ID=cds513;Parent=gene524;Dbxref=Genbank:WP_004995935.1;Name=WP_004995935.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004995935.1;transl_table=11
NC_012633.1	RefSeq	gene	506732	507079	.	-	.	ID=gene525;Name=RAF_RS02630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02630
NC_012633.1	Protein Homology	CDS	506732	507079	.	-	0	ID=cds514;Parent=gene525;Dbxref=Genbank:WP_041471845.1;Name=WP_041471845.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471845.1;transl_table=11
NC_012633.1	RefSeq	gene	507472	507990	.	-	.	ID=gene526;Name=RAF_RS02635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02635
NC_012633.1	Protein Homology	CDS	507472	507990	.	-	0	ID=cds515;Parent=gene526;Dbxref=Genbank:WP_041471846.1;Name=WP_041471846.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471846.1;transl_table=11
NC_012633.1	RefSeq	gene	507932	508275	.	-	.	ID=gene527;Name=RAF_RS02640;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS02640;pseudo=true
NC_012633.1	Protein Homology	CDS	507932	508275	.	-	0	ID=cds516;Parent=gene527;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	508311	508643	.	-	.	ID=gene528;Name=RAF_RS02645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02645
NC_012633.1	Protein Homology	CDS	508311	508643	.	-	0	ID=cds517;Parent=gene528;Dbxref=Genbank:WP_041472012.1;Name=WP_041472012.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041472012.1;transl_table=11
NC_012633.1	RefSeq	gene	508701	508928	.	-	.	ID=gene529;Name=RAF_RS02650;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS02650;partial=true;pseudo=true;start_range=.,508701
NC_012633.1	Protein Homology	CDS	508701	508928	.	-	0	ID=cds518;Parent=gene529;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,508701;transl_table=11
NC_012633.1	RefSeq	gene	509148	509497	.	-	.	ID=gene530;Name=RAF_RS02655;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS02655;partial=true;pseudo=true;start_range=.,509148
NC_012633.1	Protein Homology	CDS	509148	509497	.	-	0	ID=cds519;Parent=gene530;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,509148;transl_except=(pos:complement(509322..509324)%2Caa:Other);transl_table=11
NC_012633.1	RefSeq	gene	509630	510574	.	-	.	ID=gene531;Name=RAF_RS02660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02660;old_locus_tag=RAF_ORF0481
NC_012633.1	Protein Homology	CDS	509630	510574	.	-	0	ID=cds520;Parent=gene531;Dbxref=Genbank:WP_012719631.1;Name=WP_012719631.1;Note=Catalyzes the reversible oxidation of malate to oxaloacetate;gbkey=CDS;product=malate dehydrogenase;protein_id=WP_012719631.1;transl_table=11
NC_012633.1	RefSeq	gene	510717	510941	.	+	.	ID=gene532;Name=RAF_RS02665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02665;old_locus_tag=RAF_ORF0482
NC_012633.1	Protein Homology	CDS	510717	510941	.	+	0	ID=cds521;Parent=gene532;Dbxref=Genbank:WP_041471847.1;Name=WP_041471847.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471847.1;transl_table=11
NC_012633.1	RefSeq	gene	511131	511298	.	+	.	ID=gene533;Name=RAF_RS02670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02670
NC_012633.1	Protein Homology	CDS	511131	511298	.	+	0	ID=cds522;Parent=gene533;Dbxref=Genbank:WP_032849810.1;Name=WP_032849810.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032849810.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	511669	511806	.	-	.	ID=id235;Note=RAF_REPEAT216_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	511823	511928	.	+	.	ID=id236;Note=RAF_REPEAT217_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	512072	513595	.	-	.	ID=gene534;Name=RAF_RS02675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02675;old_locus_tag=RAF_ORF0483
NC_012633.1	Protein Homology	CDS	512072	513595	.	-	0	ID=cds523;Parent=gene534;Dbxref=Genbank:WP_012719633.1;Name=WP_012719633.1;gbkey=CDS;product=ADP%2CATP carrier protein 2;protein_id=WP_012719633.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	513579	513703	.	-	.	ID=id237;Note=RAF_REPEAT218_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	513804	515417	.	-	.	ID=gene535;Name=RAF_RS02680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02680;old_locus_tag=RAF_ORF0484
NC_012633.1	Protein Homology	CDS	513804	515417	.	-	0	ID=cds524;Parent=gene535;Dbxref=Genbank:WP_012719634.1;Name=WP_012719634.1;gbkey=CDS;product=CTP synthase;protein_id=WP_012719634.1;transl_table=11
NC_012633.1	RefSeq	gene	515420	516160	.	-	.	ID=gene536;Name=RAF_RS02685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02685;old_locus_tag=RAF_ORF0485
NC_012633.1	Protein Homology	CDS	515420	516160	.	-	0	ID=cds525;Parent=gene536;Dbxref=Genbank:WP_012719635.1;Name=WP_012719635.1;gbkey=CDS;product=3-deoxy-manno-octulosonate cytidylyltransferase;protein_id=WP_012719635.1;transl_table=11
NC_012633.1	RefSeq	gene	516259	516334	.	+	.	ID=gene537;Name=RAF_RS02690;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS02690;old_locus_tag=RAF_RNA12
NC_012633.1	tRNAscan-SE	tRNA	516259	516334	.	+	.	ID=rna11;Parent=gene537;anticodon=(pos:516292..516294);gbkey=tRNA;product=tRNA-Lys
NC_012633.1	tRNAscan-SE	exon	516259	516334	.	+	.	ID=id238;Parent=rna11;anticodon=(pos:516292..516294);gbkey=tRNA;product=tRNA-Lys
NC_012633.1	RefSeq	gene	516349	516425	.	+	.	ID=gene538;Name=RAF_RS02695;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS02695;old_locus_tag=RAF_RNA13
NC_012633.1	tRNAscan-SE	tRNA	516349	516425	.	+	.	ID=rna12;Parent=gene538;anticodon=(pos:516383..516385);gbkey=tRNA;product=tRNA-Ile
NC_012633.1	tRNAscan-SE	exon	516349	516425	.	+	.	ID=id239;Parent=rna12;anticodon=(pos:516383..516385);gbkey=tRNA;product=tRNA-Ile
NC_012633.1	RefSeq	gene	516932	517060	.	-	.	ID=gene539;Name=RAF_RS02700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02700
NC_012633.1	Protein Homology	CDS	516932	517060	.	-	0	ID=cds526;Parent=gene539;Dbxref=Genbank:WP_041472014.1;Name=WP_041472014.1;gbkey=CDS;product=ADP-ribose pyrophosphatase;protein_id=WP_041472014.1;transl_table=11
NC_012633.1	RefSeq	gene	517389	518912	.	+	.	ID=gene540;Name=RAF_RS02705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02705;old_locus_tag=RAF_ORF0488
NC_012633.1	Protein Homology	CDS	517389	518912	.	+	0	ID=cds527;Parent=gene540;Dbxref=Genbank:WP_012719638.1;Name=WP_012719638.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719638.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	517628	517700	.	-	.	ID=id240;Note=RAF_REPEAT219_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	518593	518666	.	+	.	ID=id241;Note=RAF_REPEAT220_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	518905	519474	.	+	.	ID=gene541;Name=RAF_RS02710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02710;old_locus_tag=RAF_ORF0489
NC_012633.1	Protein Homology	CDS	518905	519474	.	+	0	ID=cds528;Parent=gene541;Dbxref=Genbank:WP_012719639.1;Name=WP_012719639.1;gbkey=CDS;product=GTP cyclohydrolase 1;protein_id=WP_012719639.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	519485	519517	.	+	.	ID=id242;Note=RAF_REPEAT221_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	519520	519599	.	+	.	ID=id243;Note=RAF_REPEAT222_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	519639	520919	.	+	.	ID=gene542;Name=RAF_RS02715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02715;old_locus_tag=RAF_ORF0490
NC_012633.1	Protein Homology	CDS	519639	520919	.	+	0	ID=cds529;Parent=gene542;Dbxref=Genbank:WP_010977166.1;Name=WP_010977166.1;Note=catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro);gbkey=CDS;product=proline--tRNA ligase;protein_id=WP_010977166.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	520935	521009	.	-	.	ID=id244;Note=RAF_REPEAT223_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	521132	522100	.	+	.	ID=gene543;Name=RAF_RS02720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02720;old_locus_tag=RAF_ORF0491
NC_012633.1	Protein Homology	CDS	521132	522100	.	+	0	ID=cds530;Parent=gene543;Dbxref=Genbank:WP_012719640.1;Name=WP_012719640.1;gbkey=CDS;product=cell filamentation protein Fic;protein_id=WP_012719640.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	522162	522262	.	+	.	ID=id245;Note=RAF_REPEAT224_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	522291	522497	.	+	.	ID=gene544;Name=RAF_RS02725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02725;old_locus_tag=RAF_ORF0492
NC_012633.1	Protein Homology	CDS	522291	522497	.	+	0	ID=cds531;Parent=gene544;Dbxref=Genbank:WP_004995893.1;Name=WP_004995893.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004995893.1;transl_table=11
NC_012633.1	RefSeq	gene	522502	523113	.	+	.	ID=gene545;Name=RAF_RS02730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02730;old_locus_tag=RAF_ORF0493
NC_012633.1	Protein Homology	CDS	522502	523113	.	+	0	ID=cds532;Parent=gene545;Dbxref=Genbank:WP_012719641.1;Name=WP_012719641.1;gbkey=CDS;product=Holliday junction DNA helicase RuvA;protein_id=WP_012719641.1;transl_table=11
NC_012633.1	RefSeq	gene	523748	524035	.	+	.	ID=gene546;Name=RAF_RS02740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02740;old_locus_tag=RAF_ORF0494
NC_012633.1	Protein Homology	CDS	523748	524035	.	+	0	ID=cds533;Parent=gene546;Dbxref=Genbank:WP_012719642.1;Name=WP_012719642.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719642.1;transl_table=11
NC_012633.1	RefSeq	gene	524111	525139	.	+	.	ID=gene547;Name=RAF_RS02745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02745;old_locus_tag=RAF_ORF0495
NC_012633.1	Protein Homology	CDS	524111	525139	.	+	0	ID=cds534;Parent=gene547;Dbxref=Genbank:WP_012719643.1;Name=WP_012719643.1;gbkey=CDS;product=Holliday junction DNA helicase RuvB;protein_id=WP_012719643.1;transl_table=11
NC_012633.1	RefSeq	gene	525132	526895	.	+	.	ID=gene548;Name=RAF_RS02750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02750;old_locus_tag=RAF_ORF0496
NC_012633.1	Protein Homology	CDS	525132	526895	.	+	0	ID=cds535;Parent=gene548;Dbxref=Genbank:WP_012719644.1;Name=WP_012719644.1;gbkey=CDS;product=multidrug resistance protein;protein_id=WP_012719644.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	526951	527038	.	-	.	ID=id246;Note=RAF_REPEAT225_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	527089	528333	.	+	.	ID=gene549;Name=RAF_RS02755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02755;old_locus_tag=RAF_ORF0497
NC_012633.1	Protein Homology	CDS	527089	528333	.	+	0	ID=cds536;Parent=gene549;Dbxref=Genbank:WP_012719645.1;Name=WP_012719645.1;gbkey=CDS;product=transporter;protein_id=WP_012719645.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	528375	528462	.	+	.	ID=id247;Note=RAF_REPEAT226_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	528510	529430	.	+	.	ID=gene550;Name=RAF_RS02760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02760;old_locus_tag=RAF_ORF0498
NC_012633.1	Protein Homology	CDS	528510	529430	.	+	0	ID=cds537;Parent=gene550;Dbxref=Genbank:WP_012719646.1;Name=WP_012719646.1;gbkey=CDS;product=D-alanyl-D-alanine carboxypeptidase;protein_id=WP_012719646.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	529463	529537	.	+	.	ID=id248;Note=RAF_REPEAT227_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	529600	530562	.	-	.	ID=gene551;Name=RAF_RS02765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02765;old_locus_tag=RAF_ORF0499
NC_012633.1	Protein Homology	CDS	529600	530562	.	-	0	ID=cds538;Parent=gene551;Dbxref=Genbank:WP_012719647.1;Name=WP_012719647.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719647.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	530264	530301	.	-	.	ID=id249;Note=RAF_REPEAT228_RPE-1%2C RPE-1 Part;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	530393	530530	.	-	.	ID=id250;Note=RAF_REPEAT229_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	530540	531157	.	-	.	ID=gene552;Name=RAF_RS02770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02770;old_locus_tag=RAF_ORF0500
NC_012633.1	Protein Homology	CDS	530540	531157	.	-	0	ID=cds539;Parent=gene552;Dbxref=Genbank:WP_012719648.1;Name=WP_012719648.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719648.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	531222	531315	.	+	.	ID=id251;Note=RAF_REPEAT230_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	531390	531932	.	-	.	ID=gene553;Name=RAF_RS02775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02775;old_locus_tag=RAF_ORF0501
NC_012633.1	Protein Homology	CDS	531390	531932	.	-	0	ID=cds540;Parent=gene553;Dbxref=Genbank:WP_004995863.1;Name=WP_004995863.1;gbkey=CDS;product=intracellular septation protein A;protein_id=WP_004995863.1;transl_table=11
NC_012633.1	RefSeq	gene	531962	532810	.	-	.	ID=gene554;Name=RAF_RS02780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02780;old_locus_tag=RAF_ORF0502
NC_012633.1	Protein Homology	CDS	531962	532810	.	-	0	ID=cds541;Parent=gene554;Dbxref=Genbank:WP_010977176.1;Name=WP_010977176.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010977176.1;transl_table=11
NC_012633.1	RefSeq	gene	532820	533200	.	-	.	ID=gene555;Name=RAF_RS02785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02785;old_locus_tag=RAF_ORF0503
NC_012633.1	Protein Homology	CDS	532820	533200	.	-	0	ID=cds542;Parent=gene555;Dbxref=Genbank:WP_012719649.1;Name=WP_012719649.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719649.1;transl_table=11
NC_012633.1	RefSeq	gene	533391	534386	.	-	.	ID=gene556;Name=RAF_RS02790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02790;old_locus_tag=RAF_ORF0504
NC_012633.1	Protein Homology	CDS	533391	534386	.	-	0	ID=cds543;Parent=gene556;Dbxref=Genbank:WP_012719650.1;Name=WP_012719650.1;gbkey=CDS;product=peptidyl-prolyl cis-trans isomerase;protein_id=WP_012719650.1;transl_table=11
NC_012633.1	RefSeq	gene	534531	535157	.	+	.	ID=gene557;Name=RAF_RS02795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02795;old_locus_tag=RAF_ORF0505
NC_012633.1	Protein Homology	CDS	534531	535157	.	+	0	ID=cds544;Parent=gene557;Dbxref=Genbank:WP_012719651.1;Name=WP_012719651.1;gbkey=CDS;product=dioxygenase;protein_id=WP_012719651.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	535166	535233	.	-	.	ID=id252;Note=RAF_REPEAT231_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	535365	536009	.	+	.	ID=gene558;Name=RAF_RS02800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02800;old_locus_tag=RAF_ORF0506
NC_012633.1	Protein Homology	CDS	535365	536009	.	+	0	ID=cds545;Parent=gene558;Dbxref=Genbank:WP_012719652.1;Name=WP_012719652.1;gbkey=CDS;product=thiol:disulfide interchange protein;protein_id=WP_012719652.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	536024	536148	.	+	.	ID=id253;Note=RAF_REPEAT232_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	536174	537088	.	+	.	ID=gene559;Name=RAF_RS02805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02805;old_locus_tag=RAF_ORF0507
NC_012633.1	Protein Homology	CDS	536174	537088	.	+	0	ID=cds546;Parent=gene559;Dbxref=Genbank:WP_004995853.1;Name=WP_004995853.1;gbkey=CDS;product=peptidase S49;protein_id=WP_004995853.1;transl_table=11
NC_012633.1	RefSeq	gene	537090	537536	.	+	.	ID=gene560;Name=RAF_RS02810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02810;old_locus_tag=RAF_ORF0508
NC_012633.1	Protein Homology	CDS	537090	537536	.	+	0	ID=cds547;Parent=gene560;Dbxref=Genbank:WP_010977182.1;Name=WP_010977182.1;gbkey=CDS;product=deoxyuridine 5'-triphosphate nucleotidohydrolase;protein_id=WP_010977182.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	537546	537679	.	+	.	ID=id254;Note=RAF_REPEAT233_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	537754	539715	.	+	.	ID=gene561;Name=RAF_RS02815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02815;old_locus_tag=RAF_ORF0509
NC_012633.1	Protein Homology	CDS	537754	539715	.	+	0	ID=cds548;Parent=gene561;Dbxref=Genbank:WP_012719653.1;Name=WP_012719653.1;gbkey=CDS;product=lytic transglycosylase;protein_id=WP_012719653.1;transl_table=11
NC_012633.1	RefSeq	gene	539802	540761	.	+	.	ID=gene562;Name=RAF_RS02820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02820;old_locus_tag=RAF_ORF0510
NC_012633.1	Protein Homology	CDS	539802	540761	.	+	0	ID=cds549;Parent=gene562;Dbxref=Genbank:WP_012719654.1;Name=WP_012719654.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719654.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	540832	540913	.	-	.	ID=id255;Note=RAF_REPEAT234_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	540955	541902	.	+	.	ID=gene563;Name=RAF_RS02825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02825;old_locus_tag=RAF_ORF0511
NC_012633.1	Protein Homology	CDS	540955	541902	.	+	0	ID=cds550;Parent=gene563;Dbxref=Genbank:WP_012719655.1;Name=WP_012719655.1;gbkey=CDS;product=peptidase S66;protein_id=WP_012719655.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	541970	542073	.	-	.	ID=id256;Note=RAF_REPEAT235_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	542081	544597	.	-	.	ID=gene564;Name=RAF_RS02830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02830;old_locus_tag=RAF_ORF0512
NC_012633.1	Protein Homology	CDS	542081	544597	.	-	0	ID=cds551;Parent=gene564;Dbxref=Genbank:WP_012719656.1;Name=WP_012719656.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719656.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	542273	542318	.	-	.	ID=id257;Note=RAF_REPEAT236_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	542961	543030	.	-	.	ID=id258;Note=RAF_REPEAT237_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	544748	545149	.	+	.	ID=gene565;Name=RAF_RS02835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02835;old_locus_tag=RAF_ORF0513
NC_012633.1	Protein Homology	CDS	544748	545149	.	+	0	ID=cds552;Parent=gene565;Dbxref=Genbank:WP_012719657.1;Name=WP_012719657.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719657.1;transl_table=11
NC_012633.1	RefSeq	gene	545153	545881	.	-	.	ID=gene566;Name=RAF_RS02840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02840;old_locus_tag=RAF_ORF0514
NC_012633.1	Protein Homology	CDS	545153	545881	.	-	0	ID=cds553;Parent=gene566;Dbxref=Genbank:WP_012719658.1;Name=WP_012719658.1;gbkey=CDS;product=glutamine amidotransferase;protein_id=WP_012719658.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	545944	546045	.	+	.	ID=id259;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	545970	546046	.	+	.	ID=id260;Note=RAF_REPEAT238_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	546079	547677	.	-	.	ID=gene567;Name=RAF_RS02845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02845;old_locus_tag=RAF_ORF0515
NC_012633.1	Protein Homology	CDS	546079	547677	.	-	0	ID=cds554;Parent=gene567;Dbxref=Genbank:WP_012719659.1;Name=WP_012719659.1;gbkey=CDS;product=cytochrome C oxidase subunit I;protein_id=WP_012719659.1;transl_table=11
NC_012633.1	RefSeq	gene	547683	548066	.	-	.	ID=gene568;Name=RAF_RS02850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02850;old_locus_tag=RAF_ORF0516
NC_012633.1	Protein Homology	CDS	547683	548066	.	-	0	ID=cds555;Parent=gene568;Dbxref=Genbank:WP_012719660.1;Name=WP_012719660.1;gbkey=CDS;product=acetyltransferase;protein_id=WP_012719660.1;transl_table=11
NC_012633.1	RefSeq	gene	548259	549206	.	-	.	ID=gene569;Name=RAF_RS02855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02855;old_locus_tag=RAF_ORF0517
NC_012633.1	Protein Homology	CDS	548259	549206	.	-	0	ID=cds556;Parent=gene569;Dbxref=Genbank:WP_012719661.1;Name=WP_012719661.1;gbkey=CDS;product=cytochrome C oxidase subunit II;protein_id=WP_012719661.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	549048	549191	.	-	.	ID=id261;Note=RAF_REPEAT239_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	549313	549809	.	-	.	ID=gene570;Name=RAF_RS02860;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS02860;pseudo=true
NC_012633.1	Protein Homology	CDS	549313	549809	.	-	0	ID=cds557;Parent=gene570;exception=annotated by transcript or proteomic data;gbkey=CDS;product=glycerol-3-phosphate cytidylyltransferase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	550048	551412	.	+	.	ID=gene571;Name=RAF_RS02865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02865;old_locus_tag=RAF_ORF0519
NC_012633.1	Protein Homology	CDS	550048	551412	.	+	0	ID=cds558;Parent=gene571;Dbxref=Genbank:WP_012719663.1;Name=WP_012719663.1;gbkey=CDS;product=membrane protein;protein_id=WP_012719663.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	551460	551597	.	-	.	ID=id262;Note=RAF_REPEAT240_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	551606	552211	.	+	.	ID=gene572;Name=RAF_RS02870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02870;old_locus_tag=RAF_ORF0520
NC_012633.1	Protein Homology	CDS	551606	552211	.	+	0	ID=cds559;Parent=gene572;Dbxref=Genbank:WP_012719664.1;Name=WP_012719664.1;gbkey=CDS;product=lipoprotein signal peptidase;protein_id=WP_012719664.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	552193	552335	.	+	.	ID=id263;Note=RAF_REPEAT241_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	552364	552612	.	+	.	ID=gene573;Name=RAF_RS02875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02875;old_locus_tag=RAF_ORF0521
NC_012633.1	Protein Homology	CDS	552364	552612	.	+	0	ID=cds560;Parent=gene573;Dbxref=Genbank:WP_004995830.1;Name=WP_004995830.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004995830.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	552614	552737	.	-	.	ID=id264;Note=RAF_REPEAT242_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	552783	554285	.	+	.	ID=gene574;Name=murD;gbkey=Gene;gene=murD;gene_biotype=protein_coding;locus_tag=RAF_RS02880;old_locus_tag=RAF_ORF0522
NC_012633.1	Protein Homology	CDS	552783	554285	.	+	0	ID=cds561;Parent=gene574;Dbxref=Genbank:WP_012719665.1;Name=WP_012719665.1;Note=UDP-N-acetylmuramoylalanine--D-glutamate ligase%3B involved in peptidoglycan biosynthesis%3B cytoplasmic%3B catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation;gbkey=CDS;gene=murD;product=UDP-N-acetylmuramoylalanine--D-glutamate ligase;protein_id=WP_012719665.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	553578	553699	.	+	.	ID=id265;Note=RAF_REPEAT243_RPE-3%2C RPE-3 Full;gbkey=repeat_region;gene=murD
NC_012633.1	RefSeq	repeat_region	554251	554353	.	+	.	ID=id266;Note=RAF_REPEAT244_RPE-4%2C RPE-4 Full;gbkey=repeat_region;gene=murD
NC_012633.1	RefSeq	gene	554417	555550	.	+	.	ID=gene575;Name=RAF_RS02885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02885;old_locus_tag=RAF_ORF0523
NC_012633.1	Protein Homology	CDS	554417	555550	.	+	0	ID=cds562;Parent=gene575;Dbxref=Genbank:WP_012719666.1;Name=WP_012719666.1;gbkey=CDS;product=cell division protein FtsW;protein_id=WP_012719666.1;transl_table=11
NC_012633.1	RefSeq	gene	555547	556677	.	+	.	ID=gene576;Name=RAF_RS02890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02890;old_locus_tag=RAF_ORF0524
NC_012633.1	Protein Homology	CDS	555547	556677	.	+	0	ID=cds563;Parent=gene576;Dbxref=Genbank:WP_012719667.1;Name=WP_012719667.1;gbkey=CDS;product=UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase;protein_id=WP_012719667.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	556057	556138	.	-	.	ID=id267;Note=RAF_REPEAT245_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	556690	556756	.	-	.	ID=id268;Note=RAF_REPEAT246_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	556893	557072	.	-	.	ID=gene577;Name=RAF_RS02895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02895
NC_012633.1	Protein Homology	CDS	556893	557072	.	-	0	ID=cds564;Parent=gene577;Dbxref=Genbank:WP_041471849.1;Name=WP_041471849.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471849.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	556900	557043	.	-	.	ID=id269;Note=RAF_REPEAT247_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	557073	557723	.	+	.	ID=gene578;Name=RAF_RS02900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02900;old_locus_tag=RAF_ORF0525
NC_012633.1	Protein Homology	CDS	557073	557723	.	+	0	ID=cds565;Parent=gene578;Dbxref=Genbank:WP_012719668.1;Name=WP_012719668.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719668.1;transl_table=11
NC_012633.1	RefSeq	gene	558234	558473	.	+	.	ID=gene579;Name=RAF_RS02905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02905
NC_012633.1	Protein Homology	CDS	558234	558473	.	+	0	ID=cds566;Parent=gene579;Dbxref=Genbank:WP_041471850.1;Name=WP_041471850.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471850.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	558480	558580	.	+	.	ID=id270;Note=RAF_REPEAT248_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	558691	558858	.	-	.	ID=gene580;Name=RAF_RS02910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02910
NC_012633.1	Protein Homology	CDS	558691	558858	.	-	0	ID=cds567;Parent=gene580;Dbxref=Genbank:WP_041471851.1;Name=WP_041471851.1;gbkey=CDS;product=acriflavin resistance protein;protein_id=WP_041471851.1;transl_table=11
NC_012633.1	RefSeq	gene	558899	559607	.	-	.	ID=gene581;Name=RAF_RS02915;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS02915;pseudo=true
NC_012633.1	Protein Homology	CDS	558899	559607	.	-	0	ID=cds568;Parent=gene581;exception=annotated by transcript or proteomic data;gbkey=CDS;product=acriflavin resistance protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	559632	560078	.	-	.	ID=gene582;Name=RAF_RS02920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02920
NC_012633.1	Protein Homology	CDS	559632	560078	.	-	0	ID=cds569;Parent=gene582;Dbxref=Genbank:WP_041471852.1;Name=WP_041471852.1;gbkey=CDS;product=RND transporter;protein_id=WP_041471852.1;transl_table=11
NC_012633.1	RefSeq	gene	560126	560611	.	-	.	ID=gene583;Name=RAF_RS02925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02925
NC_012633.1	Protein Homology	CDS	560126	560611	.	-	0	ID=cds570;Parent=gene583;Dbxref=Genbank:WP_041472015.1;Name=WP_041472015.1;gbkey=CDS;product=RND transporter;protein_id=WP_041472015.1;transl_table=11
NC_012633.1	RefSeq	gene	560803	561320	.	-	.	ID=gene584;Name=RAF_RS02930;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS02930;pseudo=true
NC_012633.1	Protein Homology	CDS	560803	561320	.	-	0	ID=cds571;Parent=gene584;exception=annotated by transcript or proteomic data;gbkey=CDS;product=RND transporter;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	561413	561544	.	-	.	ID=gene585;Name=RAF_RS02935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02935
NC_012633.1	Protein Homology	CDS	561413	561544	.	-	0	ID=cds572;Parent=gene585;Dbxref=Genbank:WP_026053069.1;Name=WP_026053069.1;gbkey=CDS;product=acriflavin resistance protein;protein_id=WP_026053069.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	561848	561922	.	+	.	ID=id271;Note=RAF_REPEAT249_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	561932	562591	.	-	.	ID=gene586;Name=RAF_RS07075;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS07075;old_locus_tag=RAF_ORF0532;pseudo=true
NC_012633.1	Protein Homology	CDS	561932	562591	.	-	0	ID=cds573;Parent=gene586;gbkey=CDS;product=hemolysin D;pseudo=true;transl_except=(pos:complement(562154..562156)%2Caa:Other);transl_table=11
NC_012633.1	RefSeq	gene	562807	562983	.	-	.	ID=gene587;Name=RAF_RS02950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02950
NC_012633.1	Protein Homology	CDS	562807	562983	.	-	0	ID=cds574;Parent=gene587;Dbxref=Genbank:WP_041471854.1;Name=WP_041471854.1;gbkey=CDS;product=acriflavin resistance protein;protein_id=WP_041471854.1;transl_table=11
NC_012633.1	RefSeq	gene	563050	563427	.	-	.	ID=gene588;Name=RAF_RS02955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02955
NC_012633.1	Protein Homology	CDS	563050	563427	.	-	0	ID=cds575;Parent=gene588;Dbxref=Genbank:WP_041471855.1;Name=WP_041471855.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471855.1;transl_table=11
NC_012633.1	RefSeq	gene	563697	563882	.	-	.	ID=gene589;Name=RAF_RS02960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02960
NC_012633.1	Protein Homology	CDS	563697	563882	.	-	0	ID=cds576;Parent=gene589;Dbxref=Genbank:WP_049752728.1;Name=WP_049752728.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_049752728.1;transl_table=11
NC_012633.1	RefSeq	gene	563856	563957	.	-	.	ID=gene590;Name=RAF_RS07080;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS07080;partial=true;pseudo=true;start_range=.,563856
NC_012633.1	Protein Homology	CDS	563856	563957	.	-	0	ID=cds577;Parent=gene590;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=RND transporter;pseudo=true;start_range=.,563856;transl_table=11
NC_012633.1	RefSeq	repeat_region	564265	564382	.	-	.	ID=id272;Note=RAF_REPEAT250_RPE-3%2C RPE-3 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	564356	565372	.	-	.	ID=gene591;Name=RAF_RS02965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02965;old_locus_tag=RAF_ORF0536
NC_012633.1	Protein Homology	CDS	564356	565372	.	-	0	ID=cds578;Parent=gene591;Dbxref=Genbank:WP_012719669.1;Name=WP_012719669.1;gbkey=CDS;product=glycosyl transferase family 1;protein_id=WP_012719669.1;transl_table=11
NC_012633.1	RefSeq	gene	565372	565656	.	-	.	ID=gene592;Name=RAF_RS02970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02970;old_locus_tag=RAF_ORF0537
NC_012633.1	Protein Homology	CDS	565372	565656	.	-	0	ID=cds579;Parent=gene592;Dbxref=Genbank:WP_012719670.1;Name=WP_012719670.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719670.1;transl_table=11
NC_012633.1	RefSeq	gene	565696	565929	.	-	.	ID=gene593;Name=RAF_RS02975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02975;old_locus_tag=RAF_ORF0538
NC_012633.1	Protein Homology	CDS	565696	565929	.	-	0	ID=cds580;Parent=gene593;Dbxref=Genbank:WP_012719671.1;Name=WP_012719671.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719671.1;transl_table=11
NC_012633.1	RefSeq	gene	566062	566256	.	-	.	ID=gene594;Name=RAF_RS02980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02980;old_locus_tag=RAF_ORF0539
NC_012633.1	Protein Homology	CDS	566062	566256	.	-	0	ID=cds581;Parent=gene594;Dbxref=Genbank:WP_012719672.1;Name=WP_012719672.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719672.1;transl_table=11
NC_012633.1	RefSeq	gene	566345	567157	.	+	.	ID=gene595;Name=RAF_RS02985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02985;old_locus_tag=RAF_ORF0540
NC_012633.1	Protein Homology	CDS	566345	567157	.	+	0	ID=cds582;Parent=gene595;Dbxref=Genbank:WP_012719673.1;Name=WP_012719673.1;gbkey=CDS;product=diaminopimelate epimerase;protein_id=WP_012719673.1;transl_table=11
NC_012633.1	RefSeq	gene	567147	568397	.	+	.	ID=gene596;Name=RAF_RS02990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02990;old_locus_tag=RAF_ORF0541
NC_012633.1	Protein Homology	CDS	567147	568397	.	+	0	ID=cds583;Parent=gene596;Dbxref=Genbank:WP_041471857.1;Name=WP_041471857.1;gbkey=CDS;product=2-methylthioadenine synthase;protein_id=WP_041471857.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	568463	568556	.	+	.	ID=id273;Note=RAF_REPEAT251_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	568638	569687	.	+	.	ID=gene597;Name=RAF_RS02995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS02995;old_locus_tag=RAF_ORF0542
NC_012633.1	Protein Homology	CDS	568638	569687	.	+	0	ID=cds584;Parent=gene597;Dbxref=Genbank:WP_012719675.1;Name=WP_012719675.1;gbkey=CDS;product=phenylalanine--tRNA ligase subunit alpha;protein_id=WP_012719675.1;transl_table=11
NC_012633.1	RefSeq	gene	569684	572140	.	+	.	ID=gene598;Name=RAF_RS03000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03000;old_locus_tag=RAF_ORF0543
NC_012633.1	Protein Homology	CDS	569684	572140	.	+	0	ID=cds585;Parent=gene598;Dbxref=Genbank:WP_012719676.1;Name=WP_012719676.1;gbkey=CDS;product=phenylalanine--tRNA ligase subunit beta;protein_id=WP_012719676.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	570519	570577	.	-	.	ID=id274;Note=RAF_REPEAT252_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	572145	573284	.	+	.	ID=gene599;Name=RAF_RS03005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03005;old_locus_tag=RAF_ORF0544
NC_012633.1	Protein Homology	CDS	572145	573284	.	+	0	ID=cds586;Parent=gene599;Dbxref=Genbank:WP_012719677.1;Name=WP_012719677.1;gbkey=CDS;product=DNA polymerase III subunit beta;protein_id=WP_012719677.1;transl_table=11
NC_012633.1	RefSeq	gene	573290	573412	.	+	.	ID=gene600;Name=RAF_RS03010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03010
NC_012633.1	Protein Homology	CDS	573290	573412	.	+	0	ID=cds587;Parent=gene600;Dbxref=Genbank:WP_041471858.1;Name=WP_041471858.1;gbkey=CDS;product=molecular chaperone DnaJ;protein_id=WP_041471858.1;transl_table=11
NC_012633.1	RefSeq	gene	573645	574148	.	+	.	ID=gene601;Name=RAF_RS03015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03015;old_locus_tag=RAF_ORF0545
NC_012633.1	Protein Homology	CDS	573645	574148	.	+	0	ID=cds588;Parent=gene601;Dbxref=Genbank:WP_004995768.1;Name=WP_004995768.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004995768.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	574162	574227	.	-	.	ID=id275;Note=RAF_REPEAT253_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	574277	576784	.	+	.	ID=gene602;Name=leuS;gbkey=Gene;gene=leuS;gene_biotype=protein_coding;locus_tag=RAF_RS03020;old_locus_tag=RAF_ORF0546
NC_012633.1	Protein Homology	CDS	574277	576784	.	+	0	ID=cds589;Parent=gene602;Dbxref=Genbank:WP_012719678.1;Name=WP_012719678.1;Note=leucine--tRNA ligase%3B LeuRS%3B class-I aminoacyl-tRNA synthetase%3B charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA%3B due to the large number of codons that tRNA(Leu) recognizes%2C the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA%2C but instead recognition is dependent on a conserved discriminator base A37 and a long arm%3B an editing domain hydrolyzes misformed products%3B in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase;gbkey=CDS;gene=leuS;product=leucine--tRNA ligase;protein_id=WP_012719678.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	576772	576878	.	+	.	ID=id276;gbkey=repeat_region;gene=leuS
NC_012633.1	RefSeq	repeat_region	576773	576897	.	-	.	ID=id277;Note=RAF_REPEAT254_RPE-5%2C RPE-5 Full;gbkey=repeat_region;gene=leuS
NC_012633.1	RefSeq	repeat_region	576938	577037	.	+	.	ID=id278;Note=RAF_REPEAT255_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	577466	577613	.	-	.	ID=id279;Note=RAF_REPEAT256_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	577683	577799	.	+	.	ID=id280;Note=RAF_REPEAT257_RPE-8%2C RPE-8 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	577835	578446	.	-	.	ID=gene603;Name=RAF_RS03025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03025;old_locus_tag=RAF_ORF0547
NC_012633.1	Protein Homology	CDS	577835	578446	.	-	0	ID=cds590;Parent=gene603;Dbxref=Genbank:WP_004995765.1;Name=WP_004995765.1;gbkey=CDS;product=3'-5' exonuclease;protein_id=WP_004995765.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	578507	578585	.	-	.	ID=id281;Note=RAF_REPEAT258_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	578597	578902	.	-	.	ID=gene604;Name=RAF_RS03030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03030;old_locus_tag=RAF_ORF0548
NC_012633.1	Protein Homology	CDS	578597	578902	.	-	0	ID=cds591;Parent=gene604;Dbxref=Genbank:WP_004995762.1;Name=WP_004995762.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004995762.1;transl_table=11
NC_012633.1	RefSeq	gene	578899	579591	.	-	.	ID=gene605;Name=RAF_RS03035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03035;old_locus_tag=RAF_ORF0549
NC_012633.1	Protein Homology	CDS	578899	579591	.	-	0	ID=cds592;Parent=gene605;Dbxref=Genbank:WP_012719679.1;Name=WP_012719679.1;gbkey=CDS;product=phosphatidate cytidylyltransferase;protein_id=WP_012719679.1;transl_table=11
NC_012633.1	RefSeq	gene	579551	580231	.	-	.	ID=gene606;Name=RAF_RS03040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03040;old_locus_tag=RAF_ORF0550
NC_012633.1	Protein Homology	CDS	579551	580231	.	-	0	ID=cds593;Parent=gene606;Dbxref=Genbank:WP_004995757.1;Name=WP_004995757.1;gbkey=CDS;product=isoprenyl transferase;protein_id=WP_004995757.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	580297	580370	.	+	.	ID=id282;Note=RAF_REPEAT259_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	580404	581843	.	-	.	ID=gene607;Name=RAF_RS03045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03045;old_locus_tag=RAF_ORF0551
NC_012633.1	Protein Homology	CDS	580404	581843	.	-	0	ID=cds594;Parent=gene607;Dbxref=Genbank:WP_012719680.1;Name=WP_012719680.1;gbkey=CDS;product=ATPase;protein_id=WP_012719680.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	581695	581810	.	-	.	ID=id283;Note=RAF_REPEAT260_RPE-3%2C RPE-3 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	581818	582498	.	-	.	ID=gene608;Name=RAF_RS03050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03050;old_locus_tag=RAF_ORF0552
NC_012633.1	Protein Homology	CDS	581818	582498	.	-	0	ID=cds595;Parent=gene608;Dbxref=Genbank:WP_012719681.1;Name=WP_012719681.1;gbkey=CDS;product=two-component system response regulator;protein_id=WP_012719681.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	582624	582654	.	+	.	ID=id284;Note=RAF_REPEAT261_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	582714	583586	.	+	.	ID=gene609;Name=RAF_RS03055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03055;old_locus_tag=RAF_ORF0553
NC_012633.1	Protein Homology	CDS	582714	583586	.	+	0	ID=cds596;Parent=gene609;Dbxref=Genbank:WP_012719682.1;Name=WP_012719682.1;gbkey=CDS;product=branched-chain amino acid aminotransferase;protein_id=WP_012719682.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	583659	583735	.	+	.	ID=id285;Note=RAF_REPEAT262_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	583772	584656	.	+	.	ID=gene610;Name=RAF_RS03060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03060;old_locus_tag=RAF_ORF0554
NC_012633.1	Protein Homology	CDS	583772	584656	.	+	0	ID=cds597;Parent=gene610;Dbxref=Genbank:WP_012719683.1;Name=WP_012719683.1;gbkey=CDS;product=4-hydroxy-tetrahydrodipicolinate synthase;protein_id=WP_012719683.1;transl_table=11
NC_012633.1	RefSeq	gene	584653	585111	.	+	.	ID=gene611;Name=RAF_RS03065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03065;old_locus_tag=RAF_ORF0555
NC_012633.1	Protein Homology	CDS	584653	585111	.	+	0	ID=cds598;Parent=gene611;Dbxref=Genbank:WP_012719684.1;Name=WP_012719684.1;gbkey=CDS;product=SsrA-binding protein;protein_id=WP_012719684.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	585168	585192	.	-	.	ID=id286;Note=RAF_REPEAT263_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	585244	586035	.	+	.	ID=gene612;Name=RAF_RS03070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03070;old_locus_tag=RAF_ORF0556
NC_012633.1	Protein Homology	CDS	585244	586035	.	+	0	ID=cds599;Parent=gene612;Dbxref=Genbank:WP_012719685.1;Name=WP_012719685.1;gbkey=CDS;product=thiol:disulfide interchange protein;protein_id=WP_012719685.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	586140	586206	.	+	.	ID=id287;Note=RAF_REPEAT264_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	586269	587144	.	-	.	ID=gene613;Name=RAF_RS03075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03075;old_locus_tag=RAF_ORF0557
NC_012633.1	Protein Homology	CDS	586269	587144	.	-	0	ID=cds600;Parent=gene613;Dbxref=Genbank:WP_012719686.1;Name=WP_012719686.1;gbkey=CDS;product=succinyl-CoA synthetase subunit alpha;protein_id=WP_012719686.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	587180	587260	.	+	.	ID=id288;Note=RAF_REPEAT265_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	587320	588480	.	-	.	ID=gene614;Name=sucC;gbkey=Gene;gene=sucC;gene_biotype=protein_coding;locus_tag=RAF_RS03080;old_locus_tag=RAF_ORF0558
NC_012633.1	Protein Homology	CDS	587320	588480	.	-	0	ID=cds601;Parent=gene614;Dbxref=Genbank:WP_012719687.1;Name=WP_012719687.1;Note=catalyzes the interconversion of succinyl-CoA and succinate;gbkey=CDS;gene=sucC;product=succinyl-CoA ligase subunit beta;protein_id=WP_012719687.1;transl_table=11
NC_012633.1	RefSeq	gene	588513	588902	.	-	.	ID=gene615;Name=RAF_RS03085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03085;old_locus_tag=RAF_ORF0559
NC_012633.1	Protein Homology	CDS	588513	588902	.	-	0	ID=cds602;Parent=gene615;Dbxref=Genbank:WP_041471859.1;Name=WP_041471859.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_041471859.1;transl_table=11
NC_012633.1	RefSeq	gene	588889	589140	.	-	.	ID=gene616;Name=RAF_RS03090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03090;old_locus_tag=RAF_ORF0560
NC_012633.1	Protein Homology	CDS	588889	589140	.	-	0	ID=cds603;Parent=gene616;Dbxref=Genbank:WP_012719689.1;Name=WP_012719689.1;gbkey=CDS;product=AbrB family transcriptional regulator;protein_id=WP_012719689.1;transl_table=11
NC_012633.1	RefSeq	gene	589301	589429	.	-	.	ID=gene617;Name=RAF_RS03095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03095
NC_012633.1	Protein Homology	CDS	589301	589429	.	-	0	ID=cds604;Parent=gene617;Dbxref=Genbank:WP_041472017.1;Name=WP_041472017.1;gbkey=CDS;product=cytochrome B561;protein_id=WP_041472017.1;transl_table=11
NC_012633.1	RefSeq	gene	589459	589755	.	-	.	ID=gene618;Name=RAF_RS03100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03100
NC_012633.1	Protein Homology	CDS	589459	589755	.	-	0	ID=cds605;Parent=gene618;Dbxref=Genbank:WP_041472018.1;Name=WP_041472018.1;gbkey=CDS;product=cytochrome B561;protein_id=WP_041472018.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	589796	589895	.	-	.	ID=id289;Note=RAF_REPEAT266_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	589922	591952	.	-	.	ID=gene619;Name=RAF_RS03105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03105;old_locus_tag=RAF_ORF0563
NC_012633.1	Protein Homology	CDS	589922	591952	.	-	0	ID=cds606;Parent=gene619;Dbxref=Genbank:WP_012719690.1;Name=WP_012719690.1;gbkey=CDS;product=peptidase S9;protein_id=WP_012719690.1;transl_table=11
NC_012633.1	RefSeq	gene	592040	592675	.	-	.	ID=gene620;Name=RAF_RS03110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03110;old_locus_tag=RAF_ORF0564
NC_012633.1	Protein Homology	CDS	592040	592675	.	-	0	ID=cds607;Parent=gene620;Dbxref=Genbank:WP_012719691.1;Name=WP_012719691.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719691.1;transl_table=11
NC_012633.1	RefSeq	gene	593003	593550	.	-	.	ID=gene621;Name=RAF_RS03115;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS03115;pseudo=true
NC_012633.1	Protein Homology	CDS	593003	593550	.	-	0	ID=cds608;Parent=gene621;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	593701	593928	.	-	.	ID=gene622;Name=RAF_RS03120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03120;old_locus_tag=RAF_ORF0566
NC_012633.1	Protein Homology	CDS	593701	593928	.	-	0	ID=cds609;Parent=gene622;Dbxref=Genbank:WP_012719693.1;Name=WP_012719693.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719693.1;transl_table=11
NC_012633.1	RefSeq	gene	594105	594467	.	-	.	ID=gene623;Name=RAF_RS03125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03125;old_locus_tag=RAF_ORF0567
NC_012633.1	Protein Homology	CDS	594105	594467	.	-	0	ID=cds610;Parent=gene623;Dbxref=Genbank:WP_012719694.1;Name=WP_012719694.1;gbkey=CDS;product=ribosome-binding factor A;protein_id=WP_012719694.1;transl_table=11
NC_012633.1	RefSeq	gene	594464	594898	.	-	.	ID=gene624;Name=RAF_RS03130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03130;old_locus_tag=RAF_ORF0568
NC_012633.1	Protein Homology	CDS	594464	594898	.	-	0	ID=cds611;Parent=gene624;Dbxref=Genbank:WP_012719695.1;Name=WP_012719695.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719695.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	594937	595003	.	-	.	ID=id290;Note=RAF_REPEAT267_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	595041	595562	.	+	.	ID=gene625;Name=RAF_RS03135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03135;old_locus_tag=RAF_ORF0569
NC_012633.1	Protein Homology	CDS	595041	595562	.	+	0	ID=cds612;Parent=gene625;Dbxref=Genbank:WP_012719696.1;Name=WP_012719696.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719696.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	595579	595705	.	+	.	ID=id291;Note=RAF_REPEAT268_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	595710	596315	.	+	.	ID=gene626;Name=RAF_RS03140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03140;old_locus_tag=RAF_ORF0570
NC_012633.1	Protein Homology	CDS	595710	596315	.	+	0	ID=cds613;Parent=gene626;Dbxref=Genbank:WP_004995735.1;Name=WP_004995735.1;gbkey=CDS;product=recombination protein RecR;protein_id=WP_004995735.1;transl_table=11
NC_012633.1	RefSeq	gene	596913	597680	.	-	.	ID=gene627;Name=RAF_RS03145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03145;old_locus_tag=RAF_ORF0571
NC_012633.1	Protein Homology	CDS	596913	597680	.	-	0	ID=cds614;Parent=gene627;Dbxref=Genbank:WP_012719697.1;Name=WP_012719697.1;gbkey=CDS;product=NAD kinase;protein_id=WP_012719697.1;transl_table=11
NC_012633.1	RefSeq	gene	597764	599446	.	+	.	ID=gene628;Name=RAF_RS03150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03150;old_locus_tag=RAF_ORF0572
NC_012633.1	Protein Homology	CDS	597764	599446	.	+	0	ID=cds615;Parent=gene628;Dbxref=Genbank:WP_012719698.1;Name=WP_012719698.1;gbkey=CDS;product=RNase J family beta-CASP ribonuclease;protein_id=WP_012719698.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	599504	599528	.	-	.	ID=id292;Note=RAF_REPEAT269_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	599586	600563	.	+	.	ID=gene629;Name=RAF_RS03155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03155;old_locus_tag=RAF_ORF0573
NC_012633.1	Protein Homology	CDS	599586	600563	.	+	0	ID=cds616;Parent=gene629;Dbxref=Genbank:WP_012719699.1;Name=WP_012719699.1;gbkey=CDS;product=glycerol-3-phosphate dehydrogenase [NAD(P)+];protein_id=WP_012719699.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	600540	600561	.	+	.	ID=id293;Note=RAF_REPEAT270_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	600573	600599	.	+	.	ID=id294;Note=RAF_REPEAT271_RR-1%2C RR-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	600788	601717	.	+	.	ID=gene630;Name=RAF_RS03160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03160;old_locus_tag=RAF_ORF0574
NC_012633.1	Protein Homology	CDS	600788	601717	.	+	0	ID=cds617;Parent=gene630;Dbxref=Genbank:WP_012719700.1;Name=WP_012719700.1;gbkey=CDS;product=permease;protein_id=WP_012719700.1;transl_table=11
NC_012633.1	RefSeq	gene	601786	602658	.	+	.	ID=gene631;Name=RAF_RS03165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03165;old_locus_tag=RAF_ORF0575
NC_012633.1	Protein Homology	CDS	601786	602658	.	+	0	ID=cds618;Parent=gene631;Dbxref=Genbank:WP_012719701.1;Name=WP_012719701.1;gbkey=CDS;product=2-hydroxy-6-oxo-6-phenylhexa-2%2C4-dienoate hydrolase;protein_id=WP_012719701.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	602692	602829	.	+	.	ID=id295;Note=RAF_REPEAT272_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	602860	603792	.	+	.	ID=gene632;Name=RAF_RS03170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03170;old_locus_tag=RAF_ORF0576
NC_012633.1	Protein Homology	CDS	602860	603792	.	+	0	ID=cds619;Parent=gene632;Dbxref=Genbank:WP_012719702.1;Name=WP_012719702.1;gbkey=CDS;product=thioredoxin reductase;protein_id=WP_012719702.1;transl_table=11
NC_012633.1	RefSeq	gene	604012	604308	.	+	.	ID=gene633;Name=RAF_RS03175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03175;old_locus_tag=RAF_ORF0577
NC_012633.1	Protein Homology	CDS	604012	604308	.	+	0	ID=cds620;Parent=gene633;Dbxref=Genbank:WP_004995724.1;Name=WP_004995724.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004995724.1;transl_table=11
NC_012633.1	RefSeq	gene	604370	604597	.	+	.	ID=gene634;Name=RAF_RS03180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03180
NC_012633.1	Protein Homology	CDS	604370	604597	.	+	0	ID=cds621;Parent=gene634;Dbxref=Genbank:WP_041471860.1;Name=WP_041471860.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471860.1;transl_table=11
NC_012633.1	RefSeq	gene	604629	604838	.	+	.	ID=gene635;Name=RAF_RS03185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03185
NC_012633.1	Protein Homology	CDS	604629	604838	.	+	0	ID=cds622;Parent=gene635;Dbxref=Genbank:WP_004995723.1;Name=WP_004995723.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004995723.1;transl_table=11
NC_012633.1	RefSeq	gene	604963	606390	.	+	.	ID=gene636;Name=RAF_RS03190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03190;old_locus_tag=RAF_ORF0578
NC_012633.1	Protein Homology	CDS	604963	606390	.	+	0	ID=cds623;Parent=gene636;Dbxref=Genbank:WP_012719703.1;Name=WP_012719703.1;gbkey=CDS;product=succinate dehydrogenase;protein_id=WP_012719703.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	606413	606512	.	+	.	ID=id296;Note=RAF_REPEAT273_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	606544	606756	.	+	.	ID=gene637;Name=RAF_RS03195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03195
NC_012633.1	Protein Homology	CDS	606544	606756	.	+	0	ID=cds624;Parent=gene637;Dbxref=Genbank:WP_041471861.1;Name=WP_041471861.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471861.1;transl_table=11
NC_012633.1	RefSeq	gene	606886	607731	.	+	.	ID=gene638;Name=RAF_RS03200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03200;old_locus_tag=RAF_ORF0579
NC_012633.1	Protein Homology	CDS	606886	607731	.	+	0	ID=cds625;Parent=gene638;Dbxref=Genbank:WP_012719704.1;Name=WP_012719704.1;gbkey=CDS;product=glycosyl transferase;protein_id=WP_012719704.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	607682	607776	.	-	.	ID=id297;Note=RAF_REPEAT274_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	607809	609770	.	+	.	ID=gene639;Name=RAF_RS03205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03205;old_locus_tag=RAF_ORF0580
NC_012633.1	Protein Homology	CDS	607809	609770	.	+	0	ID=cds626;Parent=gene639;Dbxref=Genbank:WP_012719705.1;Name=WP_012719705.1;gbkey=CDS;product=DNA helicase II;protein_id=WP_012719705.1;transl_table=11
NC_012633.1	RefSeq	gene	609836	610431	.	+	.	ID=gene640;Name=RAF_RS03210;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS03210;old_locus_tag=RAF_ORF0581;pseudo=true
NC_012633.1	Protein Homology	CDS	609836	610431	.	+	0	ID=cds627;Parent=gene640;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	610795	612147	.	+	.	ID=gene641;Name=RAF_RS03215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03215;old_locus_tag=RAF_ORF0582
NC_012633.1	Protein Homology	CDS	610795	612147	.	+	0	ID=cds628;Parent=gene641;Dbxref=Genbank:WP_012719707.1;Name=WP_012719707.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719707.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	612234	612313	.	-	.	ID=id298;Note=RAF_REPEAT275_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	612321	612352	.	+	.	ID=id299;Note=RAF_REPEAT276_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	612324	613355	.	-	.	ID=gene642;Name=RAF_RS03220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03220;old_locus_tag=RAF_ORF0583
NC_012633.1	Protein Homology	CDS	612324	613355	.	-	0	ID=cds629;Parent=gene642;Dbxref=Genbank:WP_012719708.1;Name=WP_012719708.1;Note=catalyzes the formation of 2-oxobutanoate from L-threonine;gbkey=CDS;product=threonine dehydratase;protein_id=WP_012719708.1;transl_table=11
NC_012633.1	RefSeq	gene	613441	615777	.	+	.	ID=gene643;Name=RAF_RS03225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03225;old_locus_tag=RAF_ORF0584
NC_012633.1	Protein Homology	CDS	613441	615777	.	+	0	ID=cds630;Parent=gene643;Dbxref=Genbank:WP_012719709.1;Name=WP_012719709.1;gbkey=CDS;product=peptidase;protein_id=WP_012719709.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	615895	615956	.	-	.	ID=id300;Note=RAF_REPEAT277_RPE-2%2C RPE-2 Part;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	615984	616086	.	+	.	ID=id301;Note=RAF_REPEAT278_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	616279	616395	.	-	.	ID=id302;Note=RAF_REPEAT279_RPE-3%2C RPE-3 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	616462	616689	.	+	.	ID=gene644;Name=RAF_RS03230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03230
NC_012633.1	Protein Homology	CDS	616462	616689	.	+	0	ID=cds631;Parent=gene644;Dbxref=Genbank:WP_004995713.1;Name=WP_004995713.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004995713.1;transl_table=11
NC_012633.1	RefSeq	gene	617048	617605	.	+	.	ID=gene645;Name=RAF_RS03235;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS03235;pseudo=true
NC_012633.1	Protein Homology	CDS	617048	617605	.	+	0	ID=cds632;Parent=gene645;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	618135	618350	.	-	.	ID=gene646;Name=RAF_RS03240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03240
NC_012633.1	Protein Homology	CDS	618135	618350	.	-	0	ID=cds633;Parent=gene646;Dbxref=Genbank:WP_041471862.1;Name=WP_041471862.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471862.1;transl_table=11
NC_012633.1	RefSeq	gene	618854	618930	.	-	.	ID=gene647;Name=RAF_RS03245;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS03245;old_locus_tag=RAF_RNA14
NC_012633.1	tRNAscan-SE	tRNA	618854	618930	.	-	.	ID=rna13;Parent=gene647;anticodon=(pos:complement(618894..618896));gbkey=tRNA;product=tRNA-Asp
NC_012633.1	tRNAscan-SE	exon	618854	618930	.	-	.	ID=id303;Parent=rna13;anticodon=(pos:complement(618894..618896));gbkey=tRNA;product=tRNA-Asp
NC_012633.1	RefSeq	gene	619326	619634	.	+	.	ID=gene648;Name=RAF_RS03250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03250;old_locus_tag=RAF_ORF0587
NC_012633.1	Protein Homology	CDS	619326	619634	.	+	0	ID=cds634;Parent=gene648;Dbxref=Genbank:WP_012719712.1;Name=WP_012719712.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719712.1;transl_table=11
NC_012633.1	RefSeq	gene	619751	620329	.	+	.	ID=gene649;Name=RAF_RS03255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03255;old_locus_tag=RAF_ORF0588
NC_012633.1	Protein Homology	CDS	619751	620329	.	+	0	ID=cds635;Parent=gene649;Dbxref=Genbank:WP_012150829.1;Name=WP_012150829.1;gbkey=CDS;product=sigma(54) modulation protein;protein_id=WP_012150829.1;transl_table=11
NC_012633.1	RefSeq	gene	620329	620844	.	+	.	ID=gene650;Name=RAF_RS03260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03260;old_locus_tag=RAF_ORF0589
NC_012633.1	Protein Homology	CDS	620329	620844	.	+	0	ID=cds636;Parent=gene650;Dbxref=Genbank:WP_012719713.1;Name=WP_012719713.1;gbkey=CDS;product=carbonic anhydrase;protein_id=WP_012719713.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	620833	620864	.	-	.	ID=id304;Note=RAF_REPEAT280_RPE-5%2C RPE-5 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	620875	621741	.	-	.	ID=gene651;Name=RAF_RS03265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03265;old_locus_tag=RAF_ORF0590
NC_012633.1	Protein Homology	CDS	620875	621741	.	-	0	ID=cds637;Parent=gene651;Dbxref=Genbank:WP_004995703.1;Name=WP_004995703.1;Note=catalyzes the formation of 5%2C10-methenyltetrahydrofolate from 5%2C10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5%2C10-methenyltetrahydrofolate;gbkey=CDS;product=bifunctional protein FolD;protein_id=WP_004995703.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	621771	621846	.	-	.	ID=id305;Note=RAF_REPEAT281_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	621878	622900	.	-	.	ID=gene652;Name=RAF_RS03270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03270;old_locus_tag=RAF_ORF0591
NC_012633.1	Protein Homology	CDS	621878	622900	.	-	0	ID=cds638;Parent=gene652;Dbxref=Genbank:WP_012719714.1;Name=WP_012719714.1;gbkey=CDS;product=ferredoxin--NADP reductase;protein_id=WP_012719714.1;transl_table=11
NC_012633.1	RefSeq	gene	623534	623761	.	+	.	ID=gene653;Name=RAF_RS03275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03275
NC_012633.1	Protein Homology	CDS	623534	623761	.	+	0	ID=cds639;Parent=gene653;Dbxref=Genbank:WP_049752707.1;Name=WP_049752707.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_049752707.1;transl_table=11
NC_012633.1	RefSeq	gene	623765	623986	.	+	.	ID=gene654;Name=RAF_RS03280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03280
NC_012633.1	Protein Homology	CDS	623765	623986	.	+	0	ID=cds640;Parent=gene654;Dbxref=Genbank:WP_041471863.1;Name=WP_041471863.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471863.1;transl_table=11
NC_012633.1	RefSeq	gene	624231	624458	.	+	.	ID=gene655;Name=RAF_RS03285;end_range=624458,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS03285;partial=true;pseudo=true
NC_012633.1	Protein Homology	CDS	624231	624458	.	+	0	ID=cds641;Parent=gene655;end_range=624458,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	624492	624752	.	+	.	ID=gene656;Name=RAF_RS03290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03290
NC_012633.1	Protein Homology	CDS	624492	624752	.	+	0	ID=cds642;Parent=gene656;Dbxref=Genbank:WP_041472020.1;Name=WP_041472020.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041472020.1;transl_table=11
NC_012633.1	RefSeq	gene	624724	624960	.	+	.	ID=gene657;Name=RAF_RS03295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03295
NC_012633.1	Protein Homology	CDS	624724	624960	.	+	0	ID=cds643;Parent=gene657;Dbxref=Genbank:WP_004995697.1;Name=WP_004995697.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004995697.1;transl_table=11
NC_012633.1	RefSeq	gene	624957	625151	.	+	.	ID=gene658;Name=RAF_RS03300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03300
NC_012633.1	Protein Homology	CDS	624957	625151	.	+	0	ID=cds644;Parent=gene658;Dbxref=Genbank:WP_041471864.1;Name=WP_041471864.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471864.1;transl_table=11
NC_012633.1	RefSeq	gene	625277	625775	.	+	.	ID=gene659;Name=RAF_RS03305;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS03305;pseudo=true
NC_012633.1	Protein Homology	CDS	625277	625775	.	+	0	ID=cds645;Parent=gene659;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	625923	626240	.	+	.	ID=gene660;Name=RAF_RS03310;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS03310;pseudo=true
NC_012633.1	Protein Homology	CDS	625923	626240	.	+	0	ID=cds646;Parent=gene660;gbkey=CDS;product=chitin-binding protein;pseudo=true;transl_except=(pos:626034..626036%2Caa:Other);transl_table=11
NC_012633.1	RefSeq	gene	626965	628788	.	+	.	ID=gene661;Name=RAF_RS03315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03315;old_locus_tag=RAF_ORF0596
NC_012633.1	Protein Homology	CDS	626965	628788	.	+	0	ID=cds647;Parent=gene661;Dbxref=Genbank:WP_012719716.1;Name=WP_012719716.1;Note=Catalyzes the rate-limiting step in dNTP synthesis;gbkey=CDS;product=ribonucleotide-diphosphate reductase subunit alpha;protein_id=WP_012719716.1;transl_table=11
NC_012633.1	RefSeq	gene	628886	629257	.	+	.	ID=gene662;Name=RAF_RS03320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03320
NC_012633.1	Protein Homology	CDS	628886	629257	.	+	0	ID=cds648;Parent=gene662;Dbxref=Genbank:WP_049752708.1;Name=WP_049752708.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_049752708.1;transl_table=11
NC_012633.1	RefSeq	gene	629211	629393	.	+	.	ID=gene663;Name=RAF_RS03325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03325
NC_012633.1	Protein Homology	CDS	629211	629393	.	+	0	ID=cds649;Parent=gene663;Dbxref=Genbank:WP_010977276.1;Name=WP_010977276.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010977276.1;transl_table=11
NC_012633.1	RefSeq	gene	629649	630635	.	+	.	ID=gene664;Name=RAF_RS03330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03330;old_locus_tag=RAF_ORF0598
NC_012633.1	Protein Homology	CDS	629649	630635	.	+	0	ID=cds650;Parent=gene664;Dbxref=Genbank:WP_004995690.1;Name=WP_004995690.1;gbkey=CDS;product=ribonucleotide-diphosphate reductase subunit beta;protein_id=WP_004995690.1;transl_table=11
NC_012633.1	RefSeq	gene	630778	633660	.	+	.	ID=gene665;Name=RAF_RS03335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03335;old_locus_tag=RAF_ORF0599
NC_012633.1	Protein Homology	CDS	630778	633660	.	+	0	ID=cds651;Parent=gene665;Dbxref=Genbank:WP_012719718.1;Name=WP_012719718.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719718.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	631090	631193	.	+	.	ID=id306;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	634103	634206	.	+	.	ID=id307;gbkey=repeat_region
NC_012633.1	RefSeq	gene	634652	635023	.	+	.	ID=gene666;Name=RAF_RS03340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03340
NC_012633.1	Protein Homology	CDS	634652	635023	.	+	0	ID=cds652;Parent=gene666;Dbxref=Genbank:WP_041471865.1;Name=WP_041471865.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471865.1;transl_table=11
NC_012633.1	RefSeq	gene	635243	635731	.	+	.	ID=gene667;Name=RAF_RS03345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03345
NC_012633.1	Protein Homology	CDS	635243	635731	.	+	0	ID=cds653;Parent=gene667;Dbxref=Genbank:WP_041471866.1;Name=WP_041471866.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471866.1;transl_table=11
NC_012633.1	RefSeq	gene	635743	636825	.	-	.	ID=gene668;Name=RAF_RS03350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03350;old_locus_tag=RAF_ORF0602
NC_012633.1	Protein Homology	CDS	635743	636825	.	-	0	ID=cds654;Parent=gene668;Dbxref=Genbank:WP_041471867.1;Name=WP_041471867.1;gbkey=CDS;product=tRNA dimethylallyltransferase;protein_id=WP_041471867.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	636809	636909	.	+	.	ID=id308;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	636835	636910	.	+	.	ID=id309;Note=RAF_REPEAT282_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	637304	638692	.	-	.	ID=gene669;Name=RAF_RS03355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03355;old_locus_tag=RAF_ORF0603
NC_012633.1	Protein Homology	CDS	637304	638692	.	-	0	ID=cds655;Parent=gene669;Dbxref=Genbank:WP_012719720.1;Name=WP_012719720.1;gbkey=CDS;product=phosphomannomutase;protein_id=WP_012719720.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	638142	638259	.	-	.	ID=id310;Note=RAF_REPEAT283_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	638777	638801	.	-	.	ID=id311;Note=RAF_REPEAT284_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	638863	639585	.	-	.	ID=gene670;Name=RAF_RS03360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03360;old_locus_tag=RAF_ORF0604
NC_012633.1	Protein Homology	CDS	638863	639585	.	-	0	ID=cds656;Parent=gene670;Dbxref=Genbank:WP_012719721.1;Name=WP_012719721.1;gbkey=CDS;product=LPS export ABC transporter ATP-binding protein;protein_id=WP_012719721.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	639630	639726	.	-	.	ID=id312;Note=RAF_REPEAT285_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	639773	640282	.	-	.	ID=gene671;Name=RAF_RS03365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03365;old_locus_tag=RAF_ORF0605
NC_012633.1	Protein Homology	CDS	639773	640282	.	-	0	ID=cds657;Parent=gene671;Dbxref=Genbank:WP_041472021.1;Name=WP_041472021.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041472021.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	640184	640327	.	-	.	ID=id313;Note=RAF_REPEAT286_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	640326	640922	.	-	.	ID=gene672;Name=RAF_RS03370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03370;old_locus_tag=RAF_ORF0606
NC_012633.1	Protein Homology	CDS	640326	640922	.	-	0	ID=cds658;Parent=gene672;Dbxref=Genbank:WP_012719723.1;Name=WP_012719723.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719723.1;transl_table=11
NC_012633.1	RefSeq	gene	640928	641887	.	-	.	ID=gene673;Name=RAF_RS03375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03375;old_locus_tag=RAF_ORF0607
NC_012633.1	Protein Homology	CDS	640928	641887	.	-	0	ID=cds659;Parent=gene673;Dbxref=Genbank:WP_004995680.1;Name=WP_004995680.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004995680.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	641900	641967	.	+	.	ID=id314;Note=RAF_REPEAT287_RPE-4%2C RPE-4 Part;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	641998	642072	.	+	.	ID=id315;Note=RAF_REPEAT288_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	642087	644333	.	-	.	ID=gene674;Name=RAF_RS03380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03380;old_locus_tag=RAF_ORF0608
NC_012633.1	Protein Homology	CDS	642087	644333	.	-	0	ID=cds660;Parent=gene674;Dbxref=Genbank:WP_012719724.1;Name=WP_012719724.1;gbkey=CDS;product=polyribonucleotide nucleotidyltransferase;protein_id=WP_012719724.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	644379	644446	.	-	.	ID=id316;Note=RAF_REPEAT289_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	644481	644756	.	-	.	ID=gene675;Name=RAF_RS03385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03385;old_locus_tag=RAF_ORF0609
NC_012633.1	Protein Homology	CDS	644481	644756	.	-	0	ID=cds661;Parent=gene675;Dbxref=Genbank:WP_004995678.1;Name=WP_004995678.1;gbkey=CDS;product=30S ribosomal protein S15;protein_id=WP_004995678.1;transl_table=11
NC_012633.1	RefSeq	gene	644792	645829	.	-	.	ID=gene676;Name=truB;gbkey=Gene;gene=truB;gene_biotype=protein_coding;locus_tag=RAF_RS03390;old_locus_tag=RAF_ORF0610
NC_012633.1	Protein Homology	CDS	644792	645829	.	-	0	ID=cds662;Parent=gene676;Dbxref=Genbank:WP_012719725.1;Name=WP_012719725.1;Note=catalyzes isomerization of specific uridines in RNA to pseudouridine%3B responsible for residues in T loops of many tRNAs%3B proteins in this cluster have Rickettsial repeat elements (RPE) inserts;gbkey=CDS;gene=truB;product=tRNA pseudouridine synthase B;protein_id=WP_012719725.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	644903	645046	.	-	.	ID=id317;Note=RAF_REPEAT290_RPE-1%2C RPE-1 Full;gbkey=repeat_region;gene=truB
NC_012633.1	RefSeq	gene	645916	647451	.	+	.	ID=gene677;Name=RAF_RS03395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03395;old_locus_tag=RAF_ORF0611
NC_012633.1	Protein Homology	CDS	645916	647451	.	+	0	ID=cds663;Parent=gene677;Dbxref=Genbank:WP_012719726.1;Name=WP_012719726.1;gbkey=CDS;product=ATP/ADP translocase;protein_id=WP_012719726.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	647534	647650	.	-	.	ID=id318;Note=RAF_REPEAT291_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	647729	650815	.	+	.	ID=gene678;Name=RAF_RS03400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03400;old_locus_tag=RAF_ORF0612
NC_012633.1	Protein Homology	CDS	647729	650815	.	+	0	ID=cds664;Parent=gene678;Dbxref=Genbank:WP_012719727.1;Name=WP_012719727.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719727.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	650857	650881	.	-	.	ID=id319;Note=RAF_REPEAT292_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	650934	651311	.	-	.	ID=gene679;Name=RAF_RS03405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03405;old_locus_tag=RAF_ORF0613
NC_012633.1	Protein Homology	CDS	650934	651311	.	-	0	ID=cds665;Parent=gene679;Dbxref=Genbank:WP_010977292.1;Name=WP_010977292.1;gbkey=CDS;product=Cro/Cl family transcriptional regulator;protein_id=WP_010977292.1;transl_table=11
NC_012633.1	RefSeq	gene	651835	652662	.	+	.	ID=gene680;Name=RAF_RS03410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03410;old_locus_tag=RAF_ORF0614
NC_012633.1	Protein Homology	CDS	651835	652662	.	+	0	ID=cds666;Parent=gene680;Dbxref=Genbank:WP_012719728.1;Name=WP_012719728.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719728.1;transl_table=11
NC_012633.1	RefSeq	gene	652811	653644	.	-	.	ID=gene681;Name=RAF_RS03415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03415;old_locus_tag=RAF_ORF0615
NC_012633.1	Protein Homology	CDS	652811	653644	.	-	0	ID=cds667;Parent=gene681;Dbxref=Genbank:WP_012719729.1;Name=WP_012719729.1;gbkey=CDS;product=glutamine synthetase;protein_id=WP_012719729.1;transl_table=11
NC_012633.1	RefSeq	gene	653643	654365	.	+	.	ID=gene682;Name=RAF_RS03420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03420;old_locus_tag=RAF_ORF0616
NC_012633.1	Protein Homology	CDS	653643	654365	.	+	0	ID=cds668;Parent=gene682;Dbxref=Genbank:WP_012719730.1;Name=WP_012719730.1;gbkey=CDS;product=laccase;protein_id=WP_012719730.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	654468	654560	.	+	.	ID=id320;Note=RAF_REPEAT293_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	654658	655209	.	+	.	ID=gene683;Name=RAF_RS03425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03425;old_locus_tag=RAF_ORF0617
NC_012633.1	Protein Homology	CDS	654658	655209	.	+	0	ID=cds669;Parent=gene683;Dbxref=Genbank:WP_004995657.1;Name=WP_004995657.1;gbkey=CDS;product=peptide deformylase;protein_id=WP_004995657.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	655208	655352	.	-	.	ID=id321;Note=RAF_REPEAT294_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	655420	655675	.	+	.	ID=gene684;Name=RAF_RS03430;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS03430;pseudo=true
NC_012633.1	Protein Homology	CDS	655420	655675	.	+	0	ID=cds670;Parent=gene684;exception=annotated by transcript or proteomic data;gbkey=CDS;product=antitoxin;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	655679	656083	.	+	.	ID=gene685;Name=RAF_RS03435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03435;old_locus_tag=RAF_ORF0619
NC_012633.1	Protein Homology	CDS	655679	656083	.	+	0	ID=cds671;Parent=gene685;Dbxref=Genbank:WP_004995653.1;Name=WP_004995653.1;gbkey=CDS;product=toxin;protein_id=WP_004995653.1;transl_table=11
NC_012633.1	RefSeq	gene	656084	656779	.	-	.	ID=gene686;Name=RAF_RS03440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03440;old_locus_tag=RAF_ORF0620
NC_012633.1	Protein Homology	CDS	656084	656779	.	-	0	ID=cds672;Parent=gene686;Dbxref=Genbank:WP_012719732.1;Name=WP_012719732.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719732.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	656847	656922	.	-	.	ID=id322;Note=RAF_REPEAT295_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	657015	658823	.	-	.	ID=gene687;Name=RAF_RS03445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03445;old_locus_tag=RAF_ORF0621
NC_012633.1	Protein Homology	CDS	657015	658823	.	-	0	ID=cds673;Parent=gene687;Dbxref=Genbank:WP_012719733.1;Name=WP_012719733.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719733.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	658356	658448	.	+	.	ID=id323;Note=RAF_REPEAT296_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	658487	658581	.	-	.	ID=id324;Note=RAF_REPEAT297_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	658875	658975	.	-	.	ID=id325;Note=RAF_REPEAT298_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	658976	659000	.	+	.	ID=id326;Note=RAF_REPEAT299_RR-2%2C RR-2 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	659077	661713	.	-	.	ID=gene688;Name=RAF_RS03450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03450;old_locus_tag=RAF_ORF0622
NC_012633.1	Protein Homology	CDS	659077	661713	.	-	0	ID=cds674;Parent=gene688;Dbxref=Genbank:WP_012719734.1;Name=WP_012719734.1;Note=catalyzes the formation of phosphoenolpyruvate from pyruvate;gbkey=CDS;product=pyruvate phosphate dikinase;protein_id=WP_012719734.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	661837	661970	.	+	.	ID=id327;Note=RAF_REPEAT300_RPE-8%2C RPE-8 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	662030	662546	.	+	.	ID=gene689;Name=RAF_RS07120;gbkey=Gene;gene_biotype=RNase_P_RNA;locus_tag=RAF_RS07120
NC_012633.1	cmsearch	ncRNA	662030	662546	.	+	.	ID=rna14;Parent=gene689;gbkey=ncRNA;ncrna_class=RNase_P_RNA;product=bacterial RNase P
NC_012633.1	cmsearch	exon	662030	662546	.	+	.	ID=id328;Parent=rna14;gbkey=ncRNA;ncrna_class=RNase_P_RNA;product=bacterial RNase P
NC_012633.1	RefSeq	repeat_region	662178	662302	.	+	.	ID=id329;Note=RAF_REPEAT301_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	662540	662624	.	-	.	ID=id330;Note=RAF_REPEAT302_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	662644	663312	.	+	.	ID=gene690;Name=RAF_RS03455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03455;old_locus_tag=RAF_ORF0623
NC_012633.1	Protein Homology	CDS	662644	663312	.	+	0	ID=cds675;Parent=gene690;Dbxref=Genbank:WP_012719735.1;Name=WP_012719735.1;gbkey=CDS;product=glutathione S-transferase;protein_id=WP_012719735.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	663315	663463	.	-	.	ID=id331;Note=RAF_REPEAT303_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	663424	664176	.	-	.	ID=gene691;Name=RAF_RS03460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03460;old_locus_tag=RAF_ORF0624
NC_012633.1	Protein Homology	CDS	663424	664176	.	-	0	ID=cds676;Parent=gene691;Dbxref=Genbank:WP_012719736.1;Name=WP_012719736.1;gbkey=CDS;product=biofilm PGA synthesis protein PgaB;protein_id=WP_012719736.1;transl_table=11
NC_012633.1	RefSeq	gene	664252	664794	.	+	.	ID=gene692;Name=RAF_RS03465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03465;old_locus_tag=RAF_ORF0625
NC_012633.1	Protein Homology	CDS	664252	664794	.	+	0	ID=cds677;Parent=gene692;Dbxref=Genbank:WP_012719737.1;Name=WP_012719737.1;gbkey=CDS;product=biotin biosynthesis protein BioY;protein_id=WP_012719737.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	664834	664933	.	-	.	ID=id332;Note=RAF_REPEAT304_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	664996	666276	.	+	.	ID=gene693;Name=RAF_RS03470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03470;old_locus_tag=RAF_ORF0626
NC_012633.1	Protein Homology	CDS	664996	666276	.	+	0	ID=cds678;Parent=gene693;Dbxref=Genbank:WP_012719738.1;Name=WP_012719738.1;gbkey=CDS;product=bifunctional folylpolyglutamate synthase/dihydrofolate synthase;protein_id=WP_012719738.1;transl_table=11
NC_012633.1	RefSeq	gene	666279	666473	.	-	.	ID=gene694;Name=RAF_RS03475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03475
NC_012633.1	Protein Homology	CDS	666279	666473	.	-	0	ID=cds679;Parent=gene694;Dbxref=Genbank:WP_041471868.1;Name=WP_041471868.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471868.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	666327	666396	.	+	.	ID=id333;Note=RAF_REPEAT305_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	666447	667076	.	+	.	ID=gene695;Name=RAF_RS03480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03480;old_locus_tag=RAF_ORF0627
NC_012633.1	Protein Homology	CDS	666447	667076	.	+	0	ID=cds680;Parent=gene695;Dbxref=Genbank:WP_010977391.1;Name=WP_010977391.1;Note=SodB%3B iron binding%3B present under aerobic and anaerobic conditions%3B destroys free radicals;gbkey=CDS;product=superoxide dismutase [Mn/Fe];protein_id=WP_010977391.1;transl_table=11
NC_012633.1	RefSeq	gene	667546	668031	.	+	.	ID=gene696;Name=RAF_RS03485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03485
NC_012633.1	Protein Homology	CDS	667546	668031	.	+	0	ID=cds681;Parent=gene696;Dbxref=Genbank:WP_041471869.1;Name=WP_041471869.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471869.1;transl_table=11
NC_012633.1	RefSeq	gene	668232	668977	.	+	.	ID=gene697;Name=RAF_RS03490;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS03490;pseudo=true
NC_012633.1	Protein Homology	CDS	668232	668977	.	+	0	ID=cds682;Parent=gene697;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	repeat_region	668898	668922	.	-	.	ID=id334;Note=RAF_REPEAT306_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	668993	669805	.	+	.	ID=gene698;Name=RAF_RS03495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03495;old_locus_tag=RAF_ORF0632
NC_012633.1	Protein Homology	CDS	668993	669805	.	+	0	ID=cds683;Parent=gene698;Dbxref=Genbank:WP_012719739.1;Name=WP_012719739.1;gbkey=CDS;product=biotin--[acetyl-CoA-carboxylase] synthetase;protein_id=WP_012719739.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	669294	669318	.	-	.	ID=id335;Note=RAF_REPEAT307_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	669860	670083	.	+	.	ID=gene699;Name=RAF_RS03500;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS03500;pseudo=true
NC_012633.1	Protein Homology	CDS	669860	670083	.	+	0	ID=cds684;Parent=gene699;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	670266	670754	.	+	.	ID=gene700;Name=RAF_RS03505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03505;old_locus_tag=RAF_ORF0633
NC_012633.1	Protein Homology	CDS	670266	670754	.	+	0	ID=cds685;Parent=gene700;Dbxref=Genbank:WP_041471870.1;Name=WP_041471870.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471870.1;transl_table=11
NC_012633.1	RefSeq	gene	670751	671035	.	+	.	ID=gene701;Name=RAF_RS03510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03510;old_locus_tag=RAF_ORF0634
NC_012633.1	Protein Homology	CDS	670751	671035	.	+	0	ID=cds686;Parent=gene701;Dbxref=Genbank:WP_012719741.1;Name=WP_012719741.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719741.1;transl_table=11
NC_012633.1	RefSeq	gene	671384	671713	.	+	.	ID=gene702;Name=RAF_RS03515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03515;old_locus_tag=RAF_ORF0637
NC_012633.1	Protein Homology	CDS	671384	671713	.	+	0	ID=cds687;Parent=gene702;Dbxref=Genbank:WP_010977381.1;Name=WP_010977381.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010977381.1;transl_table=11
NC_012633.1	RefSeq	gene	671891	672337	.	+	.	ID=gene703;Name=RAF_RS03520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03520;old_locus_tag=RAF_ORF0638
NC_012633.1	Protein Homology	CDS	671891	672337	.	+	0	ID=cds688;Parent=gene703;Dbxref=Genbank:WP_014014371.1;Name=WP_014014371.1;gbkey=CDS;product=translation initiation factor IF-3;protein_id=WP_014014371.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	672373	672443	.	+	.	ID=id336;Note=RAF_REPEAT308_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	672472	673710	.	+	.	ID=gene704;Name=RAF_RS03525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03525;old_locus_tag=RAF_ORF0639
NC_012633.1	Protein Homology	CDS	672472	673710	.	+	0	ID=cds689;Parent=gene704;Dbxref=Genbank:WP_012719743.1;Name=WP_012719743.1;gbkey=CDS;product=branched-chain alpha-keto acid dehydrogenase subunit E2;protein_id=WP_012719743.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	673738	673803	.	+	.	ID=id337;Note=RAF_REPEAT309_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	673843	674910	.	+	.	ID=gene705;Name=RAF_RS03530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03530;old_locus_tag=RAF_ORF0640
NC_012633.1	Protein Homology	CDS	673843	674910	.	+	0	ID=cds690;Parent=gene705;Dbxref=Genbank:WP_012719744.1;Name=WP_012719744.1;gbkey=CDS;product=peptide chain release factor 1;protein_id=WP_012719744.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	674912	675351	.	+	.	ID=id338;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	674937	674961	.	-	.	ID=id339;Note=RAF_REPEAT310_RR-2%2C RR-2 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	674963	675065	.	+	.	ID=id340;Note=RAF_REPEAT311_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	675066	675090	.	+	.	ID=id341;Note=RAF_REPEAT312_RR-2%2C RR-2 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	675095	675566	.	-	.	ID=gene706;Name=RAF_RS03535;end_range=675566,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS03535;partial=true;pseudo=true;start_range=.,675095
NC_012633.1	Protein Homology	CDS	675095	675566	.	-	0	ID=cds691;Parent=gene706;end_range=675566,.;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,675095;transl_table=11
NC_012633.1	RefSeq	repeat_region	676661	677019	.	+	.	ID=id342;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	676764	676788	.	-	.	ID=id343;Note=RAF_REPEAT313_RR-2%2C RR-2 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	676789	676890	.	-	.	ID=id344;Note=RAF_REPEAT314_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	676892	676916	.	+	.	ID=id345;Note=RAF_REPEAT315_RR-2%2C RR-2 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	676966	678729	.	+	.	ID=gene707;Name=RAF_RS03540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03540;old_locus_tag=RAF_ORF0643
NC_012633.1	Protein Homology	CDS	676966	678729	.	+	0	ID=cds692;Parent=gene707;Dbxref=Genbank:WP_012719747.1;Name=WP_012719747.1;gbkey=CDS;product=recombination protein RecJ;protein_id=WP_012719747.1;transl_table=11
NC_012633.1	RefSeq	gene	678773	680095	.	+	.	ID=gene708;Name=RAF_RS03545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03545;old_locus_tag=RAF_ORF0644
NC_012633.1	Protein Homology	CDS	678773	680095	.	+	0	ID=cds693;Parent=gene708;Dbxref=Genbank:WP_012719748.1;Name=WP_012719748.1;gbkey=CDS;product=methyltransferase;protein_id=WP_012719748.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	680172	680234	.	+	.	ID=id346;Note=RAF_REPEAT316_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	680480	681856	.	+	.	ID=gene709;Name=RAF_RS03550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03550;old_locus_tag=RAF_ORF0645
NC_012633.1	Protein Homology	CDS	680480	681856	.	+	0	ID=cds694;Parent=gene709;Dbxref=Genbank:WP_004998383.1;Name=WP_004998383.1;gbkey=CDS;product=transcription termination factor Rho;protein_id=WP_004998383.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	681853	681958	.	-	.	ID=id347;Note=RAF_REPEAT317_RPE-2%2C RPE-2 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	681981	682895	.	+	.	ID=gene710;Name=RAF_RS03555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03555;old_locus_tag=RAF_ORF0646
NC_012633.1	Protein Homology	CDS	681981	682895	.	+	0	ID=cds695;Parent=gene710;Dbxref=Genbank:WP_012719749.1;Name=WP_012719749.1;gbkey=CDS;product=cytidylate kinase;protein_id=WP_012719749.1;transl_table=11
NC_012633.1	RefSeq	gene	682898	683140	.	+	.	ID=gene711;Name=RAF_RS03560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03560;old_locus_tag=RAF_ORF0647
NC_012633.1	Protein Homology	CDS	682898	683140	.	+	0	ID=cds696;Parent=gene711;Dbxref=Genbank:WP_004998379.1;Name=WP_004998379.1;gbkey=CDS;product=DNA-binding protein HU-like;protein_id=WP_004998379.1;transl_table=11
NC_012633.1	RefSeq	gene	683147	683347	.	+	.	ID=gene712;Name=RAF_RS03565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03565
NC_012633.1	Protein Homology	CDS	683147	683347	.	+	0	ID=cds697;Parent=gene712;Dbxref=Genbank:WP_041471871.1;Name=WP_041471871.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471871.1;transl_table=11
NC_012633.1	RefSeq	gene	683711	683902	.	+	.	ID=gene713;Name=RAF_RS03570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03570
NC_012633.1	Protein Homology	CDS	683711	683902	.	+	0	ID=cds698;Parent=gene713;Dbxref=Genbank:WP_041471872.1;Name=WP_041471872.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471872.1;transl_table=11
NC_012633.1	RefSeq	gene	683905	684651	.	+	.	ID=gene714;Name=RAF_RS03575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03575;old_locus_tag=RAF_ORF0648
NC_012633.1	Protein Homology	CDS	683905	684651	.	+	0	ID=cds699;Parent=gene714;Dbxref=Genbank:WP_012719750.1;Name=WP_012719750.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719750.1;transl_table=11
NC_012633.1	RefSeq	gene	684763	684975	.	-	.	ID=gene715;Name=RAF_RS03580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03580
NC_012633.1	Protein Homology	CDS	684763	684975	.	-	0	ID=cds700;Parent=gene715;Dbxref=Genbank:WP_041471873.1;Name=WP_041471873.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471873.1;transl_table=11
NC_012633.1	RefSeq	gene	684989	685444	.	+	.	ID=gene716;Name=RAF_RS03585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03585;old_locus_tag=RAF_ORF0649
NC_012633.1	Protein Homology	CDS	684989	685444	.	+	0	ID=cds701;Parent=gene716;Dbxref=Genbank:WP_004998372.1;Name=WP_004998372.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004998372.1;transl_table=11
NC_012633.1	RefSeq	gene	685411	685593	.	+	.	ID=gene717;Name=RAF_RS03590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03590
NC_012633.1	Protein Homology	CDS	685411	685593	.	+	0	ID=cds702;Parent=gene717;Dbxref=Genbank:WP_041471874.1;Name=WP_041471874.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471874.1;transl_table=11
NC_012633.1	RefSeq	gene	685642	686274	.	+	.	ID=gene718;Name=RAF_RS03595;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS03595;old_locus_tag=RAF_ORF0650;partial=true;pseudo=true;start_range=.,685642
NC_012633.1	Protein Homology	CDS	685642	686274	.	+	0	ID=cds703;Parent=gene718;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=conjugal transfer protein;pseudo=true;start_range=.,685642;transl_table=11
NC_012633.1	RefSeq	gene	686747	687311	.	-	.	ID=gene719;Name=RAF_RS03600;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS03600;old_locus_tag=RAF_ORF0652;partial=true;pseudo=true;start_range=.,686747
NC_012633.1	Protein Homology	CDS	686747	687311	.	-	0	ID=cds704;Parent=gene719;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=guanosine polyphosphate pyrophosphohydrolase;pseudo=true;start_range=.,686747;transl_table=11
NC_012633.1	RefSeq	gene	687892	688746	.	-	.	ID=gene720;Name=RAF_RS03605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03605
NC_012633.1	Protein Homology	CDS	687892	688746	.	-	0	ID=cds705;Parent=gene720;Dbxref=Genbank:WP_041471875.1;Name=WP_041471875.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471875.1;transl_table=11
NC_012633.1	RefSeq	gene	689001	690005	.	-	.	ID=gene721;Name=RAF_RS03610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03610
NC_012633.1	Protein Homology	CDS	689001	690005	.	-	0	ID=cds706;Parent=gene721;Dbxref=Genbank:WP_041471876.1;Name=WP_041471876.1;gbkey=CDS;product=guanosine polyphosphate pyrophosphohydrolase/synthetase-like protein;protein_id=WP_041471876.1;transl_table=11
NC_012633.1	RefSeq	gene	690092	690827	.	-	.	ID=gene722;Name=RAF_RS03615;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS03615;pseudo=true
NC_012633.1	Protein Homology	CDS	690092	690827	.	-	0	ID=cds707;Parent=gene722;exception=annotated by transcript or proteomic data;gbkey=CDS;product=guanosine polyphosphate pyrophosphohydrolase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	repeat_region	690896	691040	.	+	.	ID=id348;Note=RAF_REPEAT318_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	691081	692039	.	-	.	ID=gene723;Name=RAF_RS03620;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS03620;pseudo=true
NC_012633.1	Protein Homology	CDS	691081	692039	.	-	0	ID=cds708;Parent=gene723;exception=annotated by transcript or proteomic data;gbkey=CDS;product=histidine kinase;pseudo=true;transl_except=(pos:complement(692016..692018)%2Caa:Other),(pos:complement(691605..691607)%2Caa:Other);transl_table=11
NC_012633.1	RefSeq	gene	692424	693236	.	+	.	ID=gene724;Name=RAF_RS03625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03625;old_locus_tag=RAF_ORF0659
NC_012633.1	Protein Homology	CDS	692424	693236	.	+	0	ID=cds709;Parent=gene724;Dbxref=Genbank:WP_012719754.1;Name=WP_012719754.1;gbkey=CDS;product=DNA methyltransferase;protein_id=WP_012719754.1;transl_table=11
NC_012633.1	RefSeq	gene	693238	694944	.	-	.	ID=gene725;Name=RAF_RS03630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03630;old_locus_tag=RAF_ORF0660
NC_012633.1	Protein Homology	CDS	693238	694944	.	-	0	ID=cds710;Parent=gene725;Dbxref=Genbank:WP_012719755.1;Name=WP_012719755.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719755.1;transl_table=11
NC_012633.1	RefSeq	gene	695083	695159	.	-	.	ID=gene726;Name=RAF_RS03635;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS03635;old_locus_tag=RAF_RNA16
NC_012633.1	tRNAscan-SE	tRNA	695083	695159	.	-	.	ID=rna15;Parent=gene726;anticodon=(pos:complement(695123..695125));gbkey=tRNA;product=tRNA-Val
NC_012633.1	tRNAscan-SE	exon	695083	695159	.	-	.	ID=id349;Parent=rna15;anticodon=(pos:complement(695123..695125));gbkey=tRNA;product=tRNA-Val
NC_012633.1	RefSeq	gene	695780	696439	.	+	.	ID=gene727;Name=RAF_RS03640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03640;old_locus_tag=RAF_ORF0662
NC_012633.1	Protein Homology	CDS	695780	696439	.	+	0	ID=cds711;Parent=gene727;Dbxref=Genbank:WP_012719757.1;Name=WP_012719757.1;gbkey=CDS;product=cytidylate kinase;protein_id=WP_012719757.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	696491	696606	.	-	.	ID=id350;Note=RAF_REPEAT319_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	696695	698401	.	+	.	ID=gene728;Name=RAF_RS03645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03645;old_locus_tag=RAF_ORF0663
NC_012633.1	Protein Homology	CDS	696695	698401	.	+	0	ID=cds712;Parent=gene728;Dbxref=Genbank:WP_012719758.1;Name=WP_012719758.1;gbkey=CDS;product=30S ribosomal protein S1;protein_id=WP_012719758.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	698415	698489	.	-	.	ID=id351;Note=RAF_REPEAT320_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	698561	699166	.	+	.	ID=gene729;Name=clpP;gbkey=Gene;gene=clpP;gene_biotype=protein_coding;locus_tag=RAF_RS03650;old_locus_tag=RAF_ORF0664
NC_012633.1	Protein Homology	CDS	698561	699166	.	+	0	ID=cds713;Parent=gene729;Dbxref=Genbank:WP_014410745.1;Name=WP_014410745.1;Note=hydrolyzes proteins to small peptides%3B with the ATPase subunits ClpA or ClpX%2C ClpP degrades specific substrates;gbkey=CDS;gene=clpP;product=ATP-dependent Clp protease proteolytic subunit;protein_id=WP_014410745.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	699224	699321	.	+	.	ID=id352;Note=RAF_REPEAT321_RPE-2%2C RPE-2 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	699325	699400	.	+	.	ID=gene730;Name=RAF_RS03655;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS03655;old_locus_tag=RAF_RNA17
NC_012633.1	tRNAscan-SE	tRNA	699325	699400	.	+	.	ID=rna16;Parent=gene730;anticodon=(pos:699358..699360);gbkey=tRNA;product=tRNA-Ala
NC_012633.1	tRNAscan-SE	exon	699325	699400	.	+	.	ID=id353;Parent=rna16;anticodon=(pos:699358..699360);gbkey=tRNA;product=tRNA-Ala
NC_012633.1	RefSeq	gene	699726	699917	.	+	.	ID=gene731;Name=RAF_RS03660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03660
NC_012633.1	Protein Homology	CDS	699726	699917	.	+	0	ID=cds714;Parent=gene731;Dbxref=Genbank:WP_049752709.1;Name=WP_049752709.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_049752709.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	700018	700058	.	+	.	ID=id354;Note=RAF_REPEAT322_RPE-8%2C RPE-8 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	700101	701129	.	+	.	ID=gene732;Name=RAF_RS03665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03665;old_locus_tag=RAF_ORF0665
NC_012633.1	Protein Homology	CDS	700101	701129	.	+	0	ID=cds715;Parent=gene732;Dbxref=Genbank:WP_012719760.1;Name=WP_012719760.1;Note=catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate;gbkey=CDS;product=isopentenyl-diphosphate delta isomerase;protein_id=WP_012719760.1;transl_table=11
NC_012633.1	RefSeq	gene	701219	701440	.	-	.	ID=gene733;Name=RAF_RS03670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03670;old_locus_tag=RAF_ORF0666
NC_012633.1	Protein Homology	CDS	701219	701440	.	-	0	ID=cds716;Parent=gene733;Dbxref=Genbank:WP_012719761.1;Name=WP_012719761.1;gbkey=CDS;product=acetyltransferase;protein_id=WP_012719761.1;transl_table=11
NC_012633.1	RefSeq	gene	701474	701689	.	-	.	ID=gene734;Name=RAF_RS03675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03675;old_locus_tag=RAF_ORF0667
NC_012633.1	Protein Homology	CDS	701474	701689	.	-	0	ID=cds717;Parent=gene734;Dbxref=Genbank:WP_012719762.1;Name=WP_012719762.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719762.1;transl_table=11
NC_012633.1	RefSeq	gene	701686	702135	.	-	.	ID=gene735;Name=RAF_RS03680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03680;old_locus_tag=RAF_ORF0668
NC_012633.1	Protein Homology	CDS	701686	702135	.	-	0	ID=cds718;Parent=gene735;Dbxref=Genbank:WP_012719763.1;Name=WP_012719763.1;gbkey=CDS;product=acetyltransferase;protein_id=WP_012719763.1;transl_table=11
NC_012633.1	RefSeq	gene	702330	702665	.	-	.	ID=gene736;Name=RAF_RS03685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03685;old_locus_tag=RAF_ORF0669
NC_012633.1	Protein Homology	CDS	702330	702665	.	-	0	ID=cds719;Parent=gene736;Dbxref=Genbank:WP_012719764.1;Name=WP_012719764.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719764.1;transl_table=11
NC_012633.1	RefSeq	gene	702682	702948	.	-	.	ID=gene737;Name=RAF_RS03690;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS03690;pseudo=true
NC_012633.1	Protein Homology	CDS	702682	702948	.	-	0	ID=cds720;Parent=gene737;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(702826..702828)%2Caa:Other);transl_table=11
NC_012633.1	RefSeq	gene	702949	703185	.	-	.	ID=gene738;Name=RAF_RS03695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03695
NC_012633.1	Protein Homology	CDS	702949	703185	.	-	0	ID=cds721;Parent=gene738;Dbxref=Genbank:WP_041471877.1;Name=WP_041471877.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471877.1;transl_table=11
NC_012633.1	RefSeq	gene	703348	703515	.	+	.	ID=gene739;Name=RAF_RS03700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03700;old_locus_tag=RAF_ORF0670
NC_012633.1	Protein Homology	CDS	703348	703515	.	+	0	ID=cds722;Parent=gene739;Dbxref=Genbank:WP_012719765.1;Name=WP_012719765.1;gbkey=CDS;product=transposase;protein_id=WP_012719765.1;transl_table=11
NC_012633.1	RefSeq	gene	703808	704680	.	+	.	ID=gene740;Name=RAF_RS03705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03705;old_locus_tag=RAF_ORF0671
NC_012633.1	Protein Homology	CDS	703808	704680	.	+	0	ID=cds723;Parent=gene740;Dbxref=Genbank:WP_012719766.1;Name=WP_012719766.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719766.1;transl_table=11
NC_012633.1	RefSeq	gene	704685	705011	.	+	.	ID=gene741;Name=RAF_RS03710;end_range=705011,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS03710;partial=true;pseudo=true;start_range=.,704685
NC_012633.1	Protein Homology	CDS	704685	705011	.	+	0	ID=cds724;Parent=gene741;end_range=705011,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,704685;transl_table=11
NC_012633.1	RefSeq	gene	704976	705239	.	+	.	ID=gene742;Name=RAF_RS03715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03715
NC_012633.1	Protein Homology	CDS	704976	705239	.	+	0	ID=cds725;Parent=gene742;Dbxref=Genbank:WP_026054985.1;Name=WP_026054985.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_026054985.1;transl_table=11
NC_012633.1	RefSeq	gene	705224	705469	.	+	.	ID=gene743;Name=RAF_RS03720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03720
NC_012633.1	Protein Homology	CDS	705224	705469	.	+	0	ID=cds726;Parent=gene743;Dbxref=Genbank:WP_041471878.1;Name=WP_041471878.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471878.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	705492	705525	.	-	.	ID=id355;Note=RAF_REPEAT323_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	705568	705659	.	-	.	ID=id356;Note=RAF_REPEAT324_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	705927	706346	.	+	.	ID=gene744;Name=RAF_RS03725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03725;old_locus_tag=RAF_ORF0674
NC_012633.1	Protein Homology	CDS	705927	706346	.	+	0	ID=cds727;Parent=gene744;Dbxref=Genbank:WP_012150915.1;Name=WP_012150915.1;gbkey=CDS;product=iron-sulfur-binding protein;protein_id=WP_012150915.1;transl_table=11
NC_012633.1	RefSeq	gene	706343	707461	.	+	.	ID=gene745;Name=RAF_RS03730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03730;old_locus_tag=RAF_ORF0675
NC_012633.1	Protein Homology	CDS	706343	707461	.	+	0	ID=cds728;Parent=gene745;Dbxref=Genbank:WP_012719767.1;Name=WP_012719767.1;gbkey=CDS;product=cysteine desulfurase;protein_id=WP_012719767.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	707494	707518	.	-	.	ID=id357;Note=RAF_REPEAT325_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	707564	708796	.	+	.	ID=gene746;Name=RAF_RS03735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03735;old_locus_tag=RAF_ORF0676
NC_012633.1	Protein Homology	CDS	707564	708796	.	+	0	ID=cds729;Parent=gene746;Dbxref=Genbank:WP_012719768.1;Name=WP_012719768.1;Note=catalyzes the removal of elemental sulfur from cysteine to produce alanine%3B involved in NAD biosynthesis;gbkey=CDS;product=cysteine desulfurase IscS;protein_id=WP_012719768.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	708828	708893	.	+	.	ID=id358;Note=RAF_REPEAT326_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	708948	709343	.	+	.	ID=gene747;Name=RAF_RS03740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03740;old_locus_tag=RAF_ORF0677
NC_012633.1	Protein Homology	CDS	708948	709343	.	+	0	ID=cds730;Parent=gene747;Dbxref=Genbank:WP_010977348.1;Name=WP_010977348.1;gbkey=CDS;product=Fe-S cluster assembly scaffold IscU;protein_id=WP_010977348.1;transl_table=11
NC_012633.1	RefSeq	gene	709347	709679	.	+	.	ID=gene748;Name=RAF_RS03745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03745;old_locus_tag=RAF_ORF0678
NC_012633.1	Protein Homology	CDS	709347	709679	.	+	0	ID=cds731;Parent=gene748;Dbxref=Genbank:WP_004998325.1;Name=WP_004998325.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004998325.1;transl_table=11
NC_012633.1	RefSeq	gene	709709	709924	.	+	.	ID=gene749;Name=RAF_RS03750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03750
NC_012633.1	Protein Homology	CDS	709709	709924	.	+	0	ID=cds732;Parent=gene749;Dbxref=Genbank:WP_041471879.1;Name=WP_041471879.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471879.1;transl_table=11
NC_012633.1	RefSeq	gene	710201	710380	.	-	.	ID=gene750;Name=RAF_RS03755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03755;old_locus_tag=RAF_ORF0679
NC_012633.1	Protein Homology	CDS	710201	710380	.	-	0	ID=cds733;Parent=gene750;Dbxref=Genbank:WP_012719769.1;Name=WP_012719769.1;gbkey=CDS;product=lysozyme;protein_id=WP_012719769.1;transl_table=11
NC_012633.1	RefSeq	gene	710528	711811	.	+	.	ID=gene751;Name=RAF_RS03760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03760;old_locus_tag=RAF_ORF0680
NC_012633.1	Protein Homology	CDS	710528	711811	.	+	0	ID=cds734;Parent=gene751;Dbxref=Genbank:WP_012719770.1;Name=WP_012719770.1;gbkey=CDS;product=amino acid permease;protein_id=WP_012719770.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	711861	711957	.	+	.	ID=id359;Note=RAF_REPEAT327_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	711953	713791	.	+	.	ID=gene752;Name=RAF_RS03765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03765;old_locus_tag=RAF_ORF0681
NC_012633.1	Protein Homology	CDS	711953	713791	.	+	0	ID=cds735;Parent=gene752;Dbxref=Genbank:WP_012719771.1;Name=WP_012719771.1;gbkey=CDS;product=aminopeptidase P;protein_id=WP_012719771.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	712460	712515	.	-	.	ID=id360;Note=RAF_REPEAT328_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	712987	713034	.	-	.	ID=id361;Note=RAF_REPEAT329_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	713851	713925	.	+	.	ID=gene753;Name=RAF_RS03770;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS03770;old_locus_tag=RAF_RNA18
NC_012633.1	tRNAscan-SE	tRNA	713851	713925	.	+	.	ID=rna17;Parent=gene753;anticodon=(pos:713883..713885);gbkey=tRNA;product=tRNA-Gln
NC_012633.1	tRNAscan-SE	exon	713851	713925	.	+	.	ID=id362;Parent=rna17;anticodon=(pos:713883..713885);gbkey=tRNA;product=tRNA-Gln
NC_012633.1	RefSeq	gene	714007	714083	.	-	.	ID=gene754;Name=RAF_RS03775;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS03775;old_locus_tag=RAF_RNA19
NC_012633.1	tRNAscan-SE	tRNA	714007	714083	.	-	.	ID=rna18;Parent=gene754;anticodon=(pos:complement(714047..714049));gbkey=tRNA;product=tRNA-Arg
NC_012633.1	tRNAscan-SE	exon	714007	714083	.	-	.	ID=id363;Parent=rna18;anticodon=(pos:complement(714047..714049));gbkey=tRNA;product=tRNA-Arg
NC_012633.1	RefSeq	gene	714090	715073	.	-	.	ID=gene755;Name=RAF_RS03780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03780;old_locus_tag=RAF_ORF0682
NC_012633.1	Protein Homology	CDS	714090	715073	.	-	0	ID=cds736;Parent=gene755;Dbxref=Genbank:WP_041472024.1;Name=WP_041472024.1;gbkey=CDS;product=octaprenyl-diphosphate synthase;protein_id=WP_041472024.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	715099	715165	.	-	.	ID=id364;Note=RAF_REPEAT330_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	715192	716850	.	-	.	ID=gene756;Name=RAF_RS03785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03785;old_locus_tag=RAF_ORF0683
NC_012633.1	Protein Homology	CDS	715192	716850	.	-	0	ID=cds737;Parent=gene756;Dbxref=Genbank:WP_012719773.1;Name=WP_012719773.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719773.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	716905	716979	.	-	.	ID=id365;Note=RAF_REPEAT331_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	717044	718549	.	-	.	ID=gene757;Name=RAF_RS03790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03790;old_locus_tag=RAF_ORF0684
NC_012633.1	Protein Homology	CDS	717044	718549	.	-	0	ID=cds738;Parent=gene757;Dbxref=Genbank:WP_012719774.1;Name=WP_012719774.1;gbkey=CDS;product=ATPase AAA;protein_id=WP_012719774.1;transl_table=11
NC_012633.1	RefSeq	gene	718784	718969	.	-	.	ID=gene758;Name=RAF_RS03795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03795
NC_012633.1	Protein Homology	CDS	718784	718969	.	-	0	ID=cds739;Parent=gene758;Dbxref=Genbank:WP_041471880.1;Name=WP_041471880.1;gbkey=CDS;product=LPS 1%2C2-glucosyltransferase;protein_id=WP_041471880.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	719541	719579	.	+	.	ID=id366;Note=RAF_REPEAT332_RPE-5%2C RPE-5 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	719584	720837	.	+	.	ID=gene759;Name=RAF_RS03810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03810;old_locus_tag=RAF_ORF0688
NC_012633.1	Protein Homology	CDS	719584	720837	.	+	0	ID=cds740;Parent=gene759;Dbxref=Genbank:WP_012719776.1;Name=WP_012719776.1;gbkey=CDS;product=transporter;protein_id=WP_012719776.1;transl_table=11
NC_012633.1	RefSeq	gene	721309	721431	.	+	.	ID=gene760;Name=RAF_RS03815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03815
NC_012633.1	Protein Homology	CDS	721309	721431	.	+	0	ID=cds741;Parent=gene760;Dbxref=Genbank:WP_012150903.1;Name=WP_012150903.1;gbkey=CDS;product=lysine transporter LysE;protein_id=WP_012150903.1;transl_table=11
NC_012633.1	RefSeq	gene	721432	722073	.	+	.	ID=gene761;Name=RAF_RS03820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03820;old_locus_tag=RAF_ORF0689
NC_012633.1	Protein Homology	CDS	721432	722073	.	+	0	ID=cds742;Parent=gene761;Dbxref=Genbank:WP_012719777.1;Name=WP_012719777.1;gbkey=CDS;product=Lysine efflux permease;protein_id=WP_012719777.1;transl_table=11
NC_012633.1	RefSeq	gene	722051	722725	.	+	.	ID=gene762;Name=RAF_RS03825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03825;old_locus_tag=RAF_ORF0690
NC_012633.1	Protein Homology	CDS	722051	722725	.	+	0	ID=cds743;Parent=gene762;Dbxref=Genbank:WP_041471881.1;Name=WP_041471881.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471881.1;transl_table=11
NC_012633.1	RefSeq	gene	722709	723464	.	+	.	ID=gene763;Name=RAF_RS03830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03830;old_locus_tag=RAF_ORF0691
NC_012633.1	Protein Homology	CDS	722709	723464	.	+	0	ID=cds744;Parent=gene763;Dbxref=Genbank:WP_012719779.1;Name=WP_012719779.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719779.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	723007	723113	.	+	.	ID=id367;Note=RAF_REPEAT333_RPE-2%2C RPE-2 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	723457	724461	.	+	.	ID=gene764;Name=RAF_RS03835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03835;old_locus_tag=RAF_ORF0692
NC_012633.1	Protein Homology	CDS	723457	724461	.	+	0	ID=cds745;Parent=gene764;Dbxref=Genbank:WP_012719780.1;Name=WP_012719780.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719780.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	724482	724595	.	+	.	ID=id368;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	724525	724598	.	-	.	ID=id369;Note=RAF_REPEAT334_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	724680	725399	.	-	.	ID=gene765;Name=RAF_RS03840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03840;old_locus_tag=RAF_ORF0693
NC_012633.1	Protein Homology	CDS	724680	725399	.	-	0	ID=cds746;Parent=gene765;Dbxref=Genbank:WP_012719781.1;Name=WP_012719781.1;gbkey=CDS;product=alpha/beta hydrolase;protein_id=WP_012719781.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	725518	725621	.	+	.	ID=id370;Note=RAF_REPEAT335_RPE-2%2C RPE-2 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	725651	725847	.	+	.	ID=gene766;Name=RAF_RS03845;end_range=725847,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS03845;partial=true;pseudo=true
NC_012633.1	Protein Homology	CDS	725651	725847	.	+	0	ID=cds747;Parent=gene766;end_range=725847,.;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=damage-inducible protein J;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	725791	725919	.	+	.	ID=gene767;Name=RAF_RS03850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03850
NC_012633.1	Protein Homology	CDS	725791	725919	.	+	0	ID=cds748;Parent=gene767;Dbxref=Genbank:WP_012262417.1;Name=WP_012262417.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012262417.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	725967	726106	.	+	.	ID=id371;Note=RAF_REPEAT336_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	726118	726558	.	-	.	ID=gene768;Name=RAF_RS03855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03855;old_locus_tag=RAF_ORF0695
NC_012633.1	Protein Homology	CDS	726118	726558	.	-	0	ID=cds749;Parent=gene768;Dbxref=Genbank:WP_041472025.1;Name=WP_041472025.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041472025.1;transl_table=11
NC_012633.1	RefSeq	gene	726623	727348	.	-	.	ID=gene769;Name=RAF_RS03860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03860;old_locus_tag=RAF_ORF0696
NC_012633.1	Protein Homology	CDS	726623	727348	.	-	0	ID=cds750;Parent=gene769;Dbxref=Genbank:WP_012719784.1;Name=WP_012719784.1;gbkey=CDS;product=1-acyl-sn-glycerol-3-phosphate acyltransferase;protein_id=WP_012719784.1;transl_table=11
NC_012633.1	RefSeq	gene	727426	728418	.	+	.	ID=gene770;Name=RAF_RS03865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03865;old_locus_tag=RAF_ORF0697
NC_012633.1	Protein Homology	CDS	727426	728418	.	+	0	ID=cds751;Parent=gene770;Dbxref=Genbank:WP_012719785.1;Name=WP_012719785.1;gbkey=CDS;product=tryptophan--tRNA ligase;protein_id=WP_012719785.1;transl_table=11
NC_012633.1	RefSeq	gene	728478	728567	.	+	.	ID=gene771;Name=RAF_RS03870;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS03870;old_locus_tag=RAF_RNA20
NC_012633.1	tRNAscan-SE	tRNA	728478	728567	.	+	.	ID=rna19;Parent=gene771;anticodon=(pos:728512..728514);gbkey=tRNA;product=tRNA-Ser
NC_012633.1	tRNAscan-SE	exon	728478	728567	.	+	.	ID=id372;Parent=rna19;anticodon=(pos:728512..728514);gbkey=tRNA;product=tRNA-Ser
NC_012633.1	RefSeq	gene	728583	728892	.	-	.	ID=gene772;Name=RAF_RS03875;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS03875;pseudo=true
NC_012633.1	Protein Homology	CDS	728583	728892	.	-	0	ID=cds752;Parent=gene772;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	729338	729538	.	-	.	ID=gene773;Name=RAF_RS03880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03880;old_locus_tag=RAF_ORF0698
NC_012633.1	Protein Homology	CDS	729338	729538	.	-	0	ID=cds753;Parent=gene773;Dbxref=Genbank:WP_012719786.1;Name=WP_012719786.1;gbkey=CDS;product=ATPase;protein_id=WP_012719786.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	730204	730337	.	-	.	ID=id373;Note=RAF_REPEAT337_RPE-8%2C RPE-8 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	730349	731404	.	-	.	ID=gene774;Name=RAF_RS03885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03885;old_locus_tag=RAF_ORF0699
NC_012633.1	Protein Homology	CDS	730349	731404	.	-	0	ID=cds754;Parent=gene774;Dbxref=Genbank:WP_012719787.1;Name=WP_012719787.1;gbkey=CDS;product=porphobilinogen deaminase;protein_id=WP_012719787.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	730487	730633	.	-	.	ID=id374;Note=RAF_REPEAT338_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	731401	732390	.	-	.	ID=gene775;Name=RAF_RS03890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03890;old_locus_tag=RAF_ORF0700
NC_012633.1	Protein Homology	CDS	731401	732390	.	-	0	ID=cds755;Parent=gene775;Dbxref=Genbank:WP_012719788.1;Name=WP_012719788.1;gbkey=CDS;product=peptidase S66;protein_id=WP_012719788.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	731714	731782	.	-	.	ID=id375;Note=RAF_REPEAT339_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	732398	734885	.	-	.	ID=gene776;Name=RAF_RS03895;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS03895;partial=true;pseudo=true;start_range=.,732398
NC_012633.1	Protein Homology	CDS	732398	734885	.	-	0	ID=cds756;Parent=gene776;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=alkaline phosphatase;pseudo=true;start_range=.,732398;transl_table=11
NC_012633.1	RefSeq	repeat_region	735011	735115	.	-	.	ID=id376;Note=RAF_REPEAT340_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	735480	735617	.	-	.	ID=gene777;Name=RAF_RS03900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03900
NC_012633.1	Protein Homology	CDS	735480	735617	.	-	0	ID=cds757;Parent=gene777;Dbxref=Genbank:WP_041471882.1;Name=WP_041471882.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471882.1;transl_table=11
NC_012633.1	RefSeq	gene	735584	736099	.	-	.	ID=gene778;Name=RAF_RS03905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03905;old_locus_tag=RAF_ORF0702
NC_012633.1	Protein Homology	CDS	735584	736099	.	-	0	ID=cds758;Parent=gene778;Dbxref=Genbank:WP_012719790.1;Name=WP_012719790.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719790.1;transl_table=11
NC_012633.1	RefSeq	gene	736117	736455	.	-	.	ID=gene779;Name=RAF_RS03910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03910;old_locus_tag=RAF_ORF0703
NC_012633.1	Protein Homology	CDS	736117	736455	.	-	0	ID=cds759;Parent=gene779;Dbxref=Genbank:WP_012719791.1;Name=WP_012719791.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719791.1;transl_table=11
NC_012633.1	RefSeq	gene	736776	737783	.	-	.	ID=gene780;Name=RAF_RS03915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03915;old_locus_tag=RAF_ORF0704
NC_012633.1	Protein Homology	CDS	736776	737783	.	-	0	ID=cds760;Parent=gene780;Dbxref=Genbank:WP_012719792.1;Name=WP_012719792.1;gbkey=CDS;product=aminomethyltransferase;protein_id=WP_012719792.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	737220	737293	.	+	.	ID=id377;Note=RAF_REPEAT341_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	737580	737683	.	-	.	ID=id378;Note=RAF_REPEAT342_RPE-2%2C RPE-2 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	737896	738687	.	+	.	ID=gene781;Name=RAF_RS03920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03920;old_locus_tag=RAF_ORF0705
NC_012633.1	Protein Homology	CDS	737896	738687	.	+	0	ID=cds761;Parent=gene781;Dbxref=Genbank:WP_014410794.1;Name=WP_014410794.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_014410794.1;transl_table=11
NC_012633.1	RefSeq	gene	738697	739542	.	+	.	ID=gene782;Name=RAF_RS03925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03925;old_locus_tag=RAF_ORF0706
NC_012633.1	Protein Homology	CDS	738697	739542	.	+	0	ID=cds762;Parent=gene782;Dbxref=Genbank:WP_012719794.1;Name=WP_012719794.1;gbkey=CDS;product=ribonuclease D;protein_id=WP_012719794.1;transl_table=11
NC_012633.1	RefSeq	gene	739594	739821	.	-	.	ID=gene783;Name=RAF_RS03930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03930
NC_012633.1	Protein Homology	CDS	739594	739821	.	-	0	ID=cds763;Parent=gene783;Dbxref=Genbank:WP_004998256.1;Name=WP_004998256.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004998256.1;transl_table=11
NC_012633.1	RefSeq	gene	739918	740439	.	-	.	ID=gene784;Name=RAF_RS03935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03935;old_locus_tag=RAF_ORF0707
NC_012633.1	Protein Homology	CDS	739918	740439	.	-	0	ID=cds764;Parent=gene784;Dbxref=Genbank:WP_041471883.1;Name=WP_041471883.1;gbkey=CDS;product=5-formyltetrahydrofolate cyclo-ligase;protein_id=WP_041471883.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	740503	740601	.	+	.	ID=id379;Note=RAF_REPEAT343_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	740648	740717	.	+	.	ID=id380;Note=RAF_REPEAT344_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	740729	742108	.	-	.	ID=gene785;Name=RAF_RS03940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03940;old_locus_tag=RAF_ORF0708
NC_012633.1	Protein Homology	CDS	740729	742108	.	-	0	ID=cds765;Parent=gene785;Dbxref=Genbank:WP_012719796.1;Name=WP_012719796.1;gbkey=CDS;product=dihydrolipoamide dehydrogenase;protein_id=WP_012719796.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	742163	742229	.	+	.	ID=id381;Note=RAF_REPEAT345_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	742261	742941	.	-	.	ID=gene786;Name=RAF_RS03945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03945;old_locus_tag=RAF_ORF0709
NC_012633.1	Protein Homology	CDS	742261	742941	.	-	0	ID=cds766;Parent=gene786;Dbxref=Genbank:WP_012719797.1;Name=WP_012719797.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719797.1;transl_table=11
NC_012633.1	RefSeq	gene	743012	743467	.	-	.	ID=gene787;Name=RAF_RS03950;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS03950;pseudo=true
NC_012633.1	Protein Homology	CDS	743012	743467	.	-	0	ID=cds767;Parent=gene787;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(743156..743158)%2Caa:Other);transl_table=11
NC_012633.1	RefSeq	gene	743559	744107	.	-	.	ID=gene788;Name=RAF_RS03955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03955;old_locus_tag=RAF_ORF0711
NC_012633.1	Protein Homology	CDS	743559	744107	.	-	0	ID=cds768;Parent=gene788;Dbxref=Genbank:WP_012719799.1;Name=WP_012719799.1;gbkey=CDS;product=DNA adenine methylase;protein_id=WP_012719799.1;transl_table=11
NC_012633.1	RefSeq	gene	744381	744589	.	-	.	ID=gene789;Name=RAF_RS03960;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS03960;pseudo=true
NC_012633.1	Protein Homology	CDS	744381	744589	.	-	0	ID=cds769;Parent=gene789;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	744570	745271	.	-	.	ID=gene790;Name=RAF_RS03965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03965;old_locus_tag=RAF_ORF0712
NC_012633.1	Protein Homology	CDS	744570	745271	.	-	0	ID=cds770;Parent=gene790;Dbxref=Genbank:WP_012719800.1;Name=WP_012719800.1;gbkey=CDS;product=transposase;protein_id=WP_012719800.1;transl_table=11
NC_012633.1	RefSeq	gene	745578	746063	.	-	.	ID=gene791;Name=RAF_RS03970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03970;old_locus_tag=RAF_ORF0713
NC_012633.1	Protein Homology	CDS	745578	746063	.	-	0	ID=cds771;Parent=gene791;Dbxref=Genbank:WP_012719801.1;Name=WP_012719801.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719801.1;transl_table=11
NC_012633.1	RefSeq	gene	746068	746910	.	-	.	ID=gene792;Name=RAF_RS03975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03975;old_locus_tag=RAF_ORF0714
NC_012633.1	Protein Homology	CDS	746068	746910	.	-	0	ID=cds772;Parent=gene792;Dbxref=Genbank:WP_012719802.1;Name=WP_012719802.1;gbkey=CDS;product=lytic transglycosylase;protein_id=WP_012719802.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	746767	746861	.	-	.	ID=id382;Note=RAF_REPEAT346_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	747205	747465	.	-	.	ID=gene793;Name=RAF_RS03980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03980;old_locus_tag=RAF_ORF0715
NC_012633.1	Protein Homology	CDS	747205	747465	.	-	0	ID=cds773;Parent=gene793;Dbxref=Genbank:WP_012719803.1;Name=WP_012719803.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719803.1;transl_table=11
NC_012633.1	RefSeq	gene	747467	747676	.	-	.	ID=gene794;Name=RAF_RS03985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03985
NC_012633.1	Protein Homology	CDS	747467	747676	.	-	0	ID=cds774;Parent=gene794;Dbxref=Genbank:WP_004998229.1;Name=WP_004998229.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004998229.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	748110	748244	.	-	.	ID=id383;Note=RAF_REPEAT347_RPE-8%2C RPE-8 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	748337	748462	.	+	.	ID=gene795;Name=rpmJ;gbkey=Gene;gene=rpmJ;gene_biotype=protein_coding;locus_tag=RAF_RS03990;old_locus_tag=RAF_ORF0716
NC_012633.1	Protein Homology	CDS	748337	748462	.	+	0	ID=cds775;Parent=gene795;Dbxref=Genbank:WP_004998227.1;Name=WP_004998227.1;Note=smallest protein in the large subunit%3B similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc%3B the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion%3B the proteins in this group do not have the motif;gbkey=CDS;gene=rpmJ;product=50S ribosomal protein L36;protein_id=WP_004998227.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	748488	748612	.	-	.	ID=id384;Note=RAF_REPEAT348_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	748671	749432	.	+	.	ID=gene796;Name=RAF_RS03995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS03995;old_locus_tag=RAF_ORF0717
NC_012633.1	Protein Homology	CDS	748671	749432	.	+	0	ID=cds776;Parent=gene796;Dbxref=Genbank:WP_012719804.1;Name=WP_012719804.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_012719804.1;transl_table=11
NC_012633.1	RefSeq	gene	749429	750175	.	+	.	ID=gene797;Name=RAF_RS04000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04000;old_locus_tag=RAF_ORF0718
NC_012633.1	Protein Homology	CDS	749429	750175	.	+	0	ID=cds777;Parent=gene797;Dbxref=Genbank:WP_004998219.1;Name=WP_004998219.1;gbkey=CDS;product=UDP-N-acetylglucosamine pyrophosphorylase;protein_id=WP_004998219.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	750242	750341	.	-	.	ID=id385;Note=RAF_REPEAT349_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	750429	750516	.	+	.	ID=gene798;Name=RAF_RS04005;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS04005;old_locus_tag=RAF_RNA21
NC_012633.1	tRNAscan-SE	tRNA	750429	750516	.	+	.	ID=rna20;Parent=gene798;anticodon=(pos:750463..750465);gbkey=tRNA;product=tRNA-Ser
NC_012633.1	tRNAscan-SE	exon	750429	750516	.	+	.	ID=id386;Parent=rna20;anticodon=(pos:750463..750465);gbkey=tRNA;product=tRNA-Ser
NC_012633.1	RefSeq	gene	750657	750881	.	-	.	ID=gene799;Name=RAF_RS04010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04010;old_locus_tag=RAF_ORF0719
NC_012633.1	Protein Homology	CDS	750657	750881	.	-	0	ID=cds778;Parent=gene799;Dbxref=Genbank:WP_004998215.1;Name=WP_004998215.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004998215.1;transl_table=11
NC_012633.1	RefSeq	gene	751320	751515	.	+	.	ID=gene800;Name=RAF_RS04015;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS04015;pseudo=true
NC_012633.1	Protein Homology	CDS	751320	751515	.	+	0	ID=cds779;Parent=gene800;exception=annotated by transcript or proteomic data;gbkey=CDS;product=isopentenyl pyrophosphate isomerase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	752722	753039	.	-	.	ID=gene801;Name=RAF_RS04020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04020;old_locus_tag=RAF_ORF0720
NC_012633.1	Protein Homology	CDS	752722	753039	.	-	0	ID=cds780;Parent=gene801;Dbxref=Genbank:WP_012719805.1;Name=WP_012719805.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719805.1;transl_table=11
NC_012633.1	RefSeq	gene	753026	753334	.	-	.	ID=gene802;Name=RAF_RS04025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04025;old_locus_tag=RAF_ORF0721
NC_012633.1	Protein Homology	CDS	753026	753334	.	-	0	ID=cds781;Parent=gene802;Dbxref=Genbank:WP_041472026.1;Name=WP_041472026.1;gbkey=CDS;product=nucleotide pyrophosphohydrolase;protein_id=WP_041472026.1;transl_table=11
NC_012633.1	RefSeq	gene	753469	753756	.	-	.	ID=gene803;Name=RAF_RS04030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04030;old_locus_tag=RAF_ORF0722
NC_012633.1	Protein Homology	CDS	753469	753756	.	-	0	ID=cds782;Parent=gene803;Dbxref=Genbank:WP_041471884.1;Name=WP_041471884.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471884.1;transl_table=11
NC_012633.1	RefSeq	gene	753764	753949	.	+	.	ID=gene804;Name=RAF_RS04035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04035
NC_012633.1	Protein Homology	CDS	753764	753949	.	+	0	ID=cds783;Parent=gene804;Dbxref=Genbank:WP_014273572.1;Name=WP_014273572.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_014273572.1;transl_table=11
NC_012633.1	RefSeq	gene	754959	755186	.	+	.	ID=gene805;Name=RAF_RS04040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04040
NC_012633.1	Protein Homology	CDS	754959	755186	.	+	0	ID=cds784;Parent=gene805;Dbxref=Genbank:WP_041471885.1;Name=WP_041471885.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471885.1;transl_table=11
NC_012633.1	RefSeq	gene	755189	755611	.	-	.	ID=gene806;Name=RAF_RS04045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04045
NC_012633.1	Protein Homology	CDS	755189	755611	.	-	0	ID=cds785;Parent=gene806;Dbxref=Genbank:WP_041472027.1;Name=WP_041472027.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041472027.1;transl_table=11
NC_012633.1	RefSeq	gene	756058	756319	.	-	.	ID=gene807;Name=RAF_RS04050;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS04050;old_locus_tag=RAF_ORF0725;pseudo=true
NC_012633.1	Protein Homology	CDS	756058	756319	.	-	0	ID=cds786;Parent=gene807;exception=annotated by transcript or proteomic data;gbkey=CDS;product=N-acetylglucosamine kinase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	756233	756912	.	-	.	ID=gene808;Name=RAF_RS04055;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS04055;partial=true;pseudo=true;start_range=.,756233
NC_012633.1	Protein Homology	CDS	756233	756912	.	-	0	ID=cds787;Parent=gene808;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,756233;transl_except=(pos:complement(756624..756626)%2Caa:Other);transl_table=11
NC_012633.1	RefSeq	gene	757598	758974	.	+	.	ID=gene809;Name=RAF_RS04060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04060;old_locus_tag=RAF_ORF0726
NC_012633.1	Protein Homology	CDS	757598	758974	.	+	0	ID=cds788;Parent=gene809;Dbxref=Genbank:WP_012719810.1;Name=WP_012719810.1;gbkey=CDS;product=NADH-quinone oxidoreductase subunit N;protein_id=WP_012719810.1;transl_table=11
NC_012633.1	RefSeq	gene	758961	760502	.	-	.	ID=gene810;Name=RAF_RS04065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04065;old_locus_tag=RAF_ORF0727
NC_012633.1	Protein Homology	CDS	758961	760502	.	-	0	ID=cds789;Parent=gene810;Dbxref=Genbank:WP_012719811.1;Name=WP_012719811.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719811.1;transl_table=11
NC_012633.1	RefSeq	gene	760591	761583	.	-	.	ID=gene811;Name=RAF_RS04070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04070;old_locus_tag=RAF_ORF0728
NC_012633.1	Protein Homology	CDS	760591	761583	.	-	0	ID=cds790;Parent=gene811;Dbxref=Genbank:WP_041472028.1;Name=WP_041472028.1;Note=catalyzes the formation of porphobilinogen from 5-aminolevulinate;gbkey=CDS;product=delta-aminolevulinic acid dehydratase;protein_id=WP_041472028.1;transl_table=11
NC_012633.1	RefSeq	gene	761797	762198	.	+	.	ID=gene812;Name=RAF_RS04075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04075
NC_012633.1	Protein Homology	CDS	761797	762198	.	+	0	ID=cds791;Parent=gene812;Dbxref=Genbank:WP_041471886.1;Name=WP_041471886.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471886.1;transl_table=11
NC_012633.1	RefSeq	gene	762185	762430	.	+	.	ID=gene813;Name=RAF_RS04080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04080
NC_012633.1	Protein Homology	CDS	762185	762430	.	+	0	ID=cds792;Parent=gene813;Dbxref=Genbank:WP_041471887.1;Name=WP_041471887.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471887.1;transl_table=11
NC_012633.1	RefSeq	gene	762417	762695	.	+	.	ID=gene814;Name=RAF_RS04085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04085
NC_012633.1	Protein Homology	CDS	762417	762695	.	+	0	ID=cds793;Parent=gene814;Dbxref=Genbank:WP_041472029.1;Name=WP_041472029.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041472029.1;transl_table=11
NC_012633.1	RefSeq	gene	762781	764727	.	-	.	ID=gene815;Name=RAF_RS04090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04090;old_locus_tag=RAF_ORF0732
NC_012633.1	Protein Homology	CDS	762781	764727	.	-	0	ID=cds794;Parent=gene815;Dbxref=Genbank:WP_012719813.1;Name=WP_012719813.1;gbkey=CDS;product=primosome assembly protein PriA;protein_id=WP_012719813.1;transl_table=11
NC_012633.1	RefSeq	gene	764791	765366	.	+	.	ID=gene816;Name=RAF_RS04095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04095;old_locus_tag=RAF_ORF0733
NC_012633.1	Protein Homology	CDS	764791	765366	.	+	0	ID=cds795;Parent=gene816;Dbxref=Genbank:WP_012719814.1;Name=WP_012719814.1;gbkey=CDS;product=3-octaprenyl-4-hydroxybenzoate carboxy-lyase;protein_id=WP_012719814.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	765543	765623	.	-	.	ID=id387;Note=RAF_REPEAT350_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	765577	765690	.	+	.	ID=id388;gbkey=repeat_region
NC_012633.1	RefSeq	gene	765733	767217	.	+	.	ID=gene817;Name=RAF_RS04100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04100;old_locus_tag=RAF_ORF0734
NC_012633.1	Protein Homology	CDS	765733	767217	.	+	0	ID=cds796;Parent=gene817;Dbxref=Genbank:WP_012719815.1;Name=WP_012719815.1;Note=unwinds double stranded DNA;gbkey=CDS;product=replicative DNA helicase;protein_id=WP_012719815.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	767284	767350	.	+	.	ID=id389;Note=RAF_REPEAT351_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	767380	767586	.	-	.	ID=gene818;Name=RAF_RS04105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04105
NC_012633.1	Protein Homology	CDS	767380	767586	.	-	0	ID=cds797;Parent=gene818;Dbxref=Genbank:WP_041471888.1;Name=WP_041471888.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471888.1;transl_table=11
NC_012633.1	RefSeq	gene	767741	767944	.	-	.	ID=gene819;Name=RAF_RS04110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04110
NC_012633.1	Protein Homology	CDS	767741	767944	.	-	0	ID=cds798;Parent=gene819;Dbxref=Genbank:WP_026053107.1;Name=WP_026053107.1;gbkey=CDS;product=amino acid permease;protein_id=WP_026053107.1;transl_table=11
NC_012633.1	RefSeq	gene	768589	768693	.	-	.	ID=gene820;Name=RAF_RS04115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04115
NC_012633.1	Protein Homology	CDS	768589	768693	.	-	0	ID=cds799;Parent=gene820;Dbxref=Genbank:WP_012150982.1;Name=WP_012150982.1;gbkey=CDS;product=tyrosine transporter;protein_id=WP_012150982.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	768918	769061	.	+	.	ID=id390;Note=RAF_REPEAT352_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	769085	769777	.	+	.	ID=gene821;Name=RAF_RS04120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04120;old_locus_tag=RAF_ORF0736
NC_012633.1	Protein Homology	CDS	769085	769777	.	+	0	ID=cds800;Parent=gene821;Dbxref=Genbank:WP_012719817.1;Name=WP_012719817.1;gbkey=CDS;product=RNA pseudouridine synthase;protein_id=WP_012719817.1;transl_table=11
NC_012633.1	RefSeq	gene	769824	772697	.	+	.	ID=gene822;Name=RAF_RS04125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04125;old_locus_tag=RAF_ORF0737
NC_012633.1	Protein Homology	CDS	769824	772697	.	+	0	ID=cds801;Parent=gene822;Dbxref=Genbank:WP_012719818.1;Name=WP_012719818.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719818.1;transl_table=11
NC_012633.1	RefSeq	gene	772702	773439	.	+	.	ID=gene823;Name=RAF_RS04130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04130;old_locus_tag=RAF_ORF0738
NC_012633.1	Protein Homology	CDS	772702	773439	.	+	0	ID=cds802;Parent=gene823;Dbxref=Genbank:WP_012719819.1;Name=WP_012719819.1;gbkey=CDS;product=SAM-dependent methyltransferase;protein_id=WP_012719819.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	773050	773193	.	+	.	ID=id391;Note=RAF_REPEAT353_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	773408	773552	.	-	.	ID=id392;Note=RAF_REPEAT354_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	773585	774919	.	+	.	ID=gene824;Name=RAF_RS04135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04135;old_locus_tag=RAF_ORF0739
NC_012633.1	Protein Homology	CDS	773585	774919	.	+	0	ID=cds803;Parent=gene824;Dbxref=Genbank:WP_012719820.1;Name=WP_012719820.1;gbkey=CDS;product=DNA repair protein RadA;protein_id=WP_012719820.1;transl_table=11
NC_012633.1	RefSeq	gene	774916	775230	.	+	.	ID=gene825;Name=RAF_RS04140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04140;old_locus_tag=RAF_ORF0740
NC_012633.1	Protein Homology	CDS	774916	775230	.	+	0	ID=cds804;Parent=gene825;Dbxref=Genbank:WP_012719821.1;Name=WP_012719821.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719821.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	775237	775331	.	+	.	ID=id393;Note=RAF_REPEAT355_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	775351	776064	.	+	.	ID=gene826;Name=RAF_RS04145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04145;old_locus_tag=RAF_ORF0741
NC_012633.1	Protein Homology	CDS	775351	776064	.	+	0	ID=cds805;Parent=gene826;Dbxref=Genbank:WP_012719822.1;Name=WP_012719822.1;gbkey=CDS;product=DNA repair protein RecO;protein_id=WP_012719822.1;transl_table=11
NC_012633.1	RefSeq	gene	776140	776376	.	+	.	ID=gene827;Name=RAF_RS04150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04150
NC_012633.1	Protein Homology	CDS	776140	776376	.	+	0	ID=cds806;Parent=gene827;Dbxref=Genbank:WP_041471889.1;Name=WP_041471889.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471889.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	776410	776434	.	+	.	ID=id394;Note=RAF_REPEAT356_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	776513	777211	.	+	.	ID=gene828;Name=RAF_RS04155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04155;old_locus_tag=RAF_ORF0742
NC_012633.1	Protein Homology	CDS	776513	777211	.	+	0	ID=cds807;Parent=gene828;Dbxref=Genbank:WP_012719823.1;Name=WP_012719823.1;gbkey=CDS;product=tRNA threonylcarbamoyladenosine biosynthesis protein TsaB;protein_id=WP_012719823.1;transl_table=11
NC_012633.1	RefSeq	gene	777262	778524	.	-	.	ID=gene829;Name=RAF_RS04160;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS04160;pseudo=true
NC_012633.1	Protein Homology	CDS	777262	778524	.	-	0	ID=cds808;Parent=gene829;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(778375..778377)%2Caa:Other);transl_table=11
NC_012633.1	RefSeq	repeat_region	778671	778692	.	-	.	ID=id395;Note=RAF_REPEAT357_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	778719	778781	.	-	.	ID=id396;Note=RAF_REPEAT358_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	778825	778881	.	+	.	ID=id397;Note=RAF_REPEAT359_RPE-5%2C RPE-5 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	778883	781378	.	-	.	ID=gene830;Name=RAF_RS04165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04165;old_locus_tag=RAF_ORF0744
NC_012633.1	Protein Homology	CDS	778883	781378	.	-	0	ID=cds809;Parent=gene830;Dbxref=Genbank:WP_012719825.1;Name=WP_012719825.1;gbkey=CDS;product=translation initiation factor IF-2;protein_id=WP_012719825.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	781469	781598	.	-	.	ID=id398;Note=RAF_REPEAT360_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	781618	783129	.	-	.	ID=gene831;Name=RAF_RS04170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04170;old_locus_tag=RAF_ORF0745
NC_012633.1	Protein Homology	CDS	781618	783129	.	-	0	ID=cds810;Parent=gene831;Dbxref=Genbank:WP_012719826.1;Name=WP_012719826.1;gbkey=CDS;product=transcription termination/antitermination protein NusA;protein_id=WP_012719826.1;transl_table=11
NC_012633.1	RefSeq	gene	783140	783625	.	-	.	ID=gene832;Name=RAF_RS04175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04175;old_locus_tag=RAF_ORF0746
NC_012633.1	Protein Homology	CDS	783140	783625	.	-	0	ID=cds811;Parent=gene832;Dbxref=Genbank:WP_004998168.1;Name=WP_004998168.1;gbkey=CDS;product=ribosome maturation factor RimP;protein_id=WP_004998168.1;transl_table=11
NC_012633.1	RefSeq	gene	783841	784155	.	-	.	ID=gene833;Name=RAF_RS04180;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS04180;pseudo=true
NC_012633.1	Protein Homology	CDS	783841	784155	.	-	0	ID=cds812;Parent=gene833;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(783955..783957)%2Caa:Other);transl_table=11
NC_012633.1	RefSeq	gene	784747	784926	.	-	.	ID=gene834;Name=RAF_RS04185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04185
NC_012633.1	Protein Homology	CDS	784747	784926	.	-	0	ID=cds813;Parent=gene834;Dbxref=Genbank:WP_016770263.1;Name=WP_016770263.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_016770263.1;transl_table=11
NC_012633.1	RefSeq	gene	785162	785590	.	+	.	ID=gene835;Name=RAF_RS04190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04190;old_locus_tag=RAF_ORF0748
NC_012633.1	Protein Homology	CDS	785162	785590	.	+	0	ID=cds814;Parent=gene835;Dbxref=Genbank:WP_012719828.1;Name=WP_012719828.1;gbkey=CDS;product=Rrf2 family transcriptional regulator;protein_id=WP_012719828.1;transl_table=11
NC_012633.1	RefSeq	gene	785585	786340	.	-	.	ID=gene836;Name=RAF_RS04195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04195;old_locus_tag=RAF_ORF0749
NC_012633.1	Protein Homology	CDS	785585	786340	.	-	0	ID=cds815;Parent=gene836;Dbxref=Genbank:WP_012719829.1;Name=WP_012719829.1;gbkey=CDS;product=hemolysin;protein_id=WP_012719829.1;transl_table=11
NC_012633.1	RefSeq	gene	786499	787734	.	-	.	ID=gene837;Name=RAF_RS04200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04200;old_locus_tag=RAF_ORF0750
NC_012633.1	Protein Homology	CDS	786499	787734	.	-	0	ID=cds816;Parent=gene837;Dbxref=Genbank:WP_012719830.1;Name=WP_012719830.1;gbkey=CDS;product=tyrosine--tRNA ligase;protein_id=WP_012719830.1;transl_table=11
NC_012633.1	RefSeq	gene	787738	788018	.	-	.	ID=gene838;Name=RAF_RS04205;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS04205;pseudo=true
NC_012633.1	Protein Homology	CDS	787738	788018	.	-	0	ID=cds817;Parent=gene838;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	788024	788275	.	-	.	ID=gene839;Name=RAF_RS04210;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS04210;pseudo=true
NC_012633.1	Protein Homology	CDS	788024	788275	.	-	0	ID=cds818;Parent=gene839;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(788249..788251)%2Caa:Other),(pos:complement(788219..788221)%2Caa:Other);transl_table=11
NC_012633.1	RefSeq	gene	788343	788636	.	+	.	ID=gene840;Name=RAF_RS04215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04215;old_locus_tag=RAF_ORF0753
NC_012633.1	Protein Homology	CDS	788343	788636	.	+	0	ID=cds819;Parent=gene840;Dbxref=Genbank:WP_012719833.1;Name=WP_012719833.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719833.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	788776	788826	.	-	.	ID=id399;Note=RAF_REPEAT361_RPE-4%2C RPE-4 Part;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	788880	788977	.	+	.	ID=id400;Note=RAF_REPEAT362_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	789917	789993	.	+	.	ID=gene841;Name=RAF_RS04220;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS04220;old_locus_tag=RAF_RNA22
NC_012633.1	tRNAscan-SE	tRNA	789917	789993	.	+	.	ID=rna21;Parent=gene841;anticodon=(pos:789951..789953);gbkey=tRNA;product=tRNA-Arg
NC_012633.1	tRNAscan-SE	exon	789917	789993	.	+	.	ID=id401;Parent=rna21;anticodon=(pos:789951..789953);gbkey=tRNA;product=tRNA-Arg
NC_012633.1	RefSeq	gene	790105	790230	.	+	.	ID=gene842;Name=RAF_RS04225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04225
NC_012633.1	Protein Homology	CDS	790105	790230	.	+	0	ID=cds820;Parent=gene842;Dbxref=Genbank:WP_014273596.1;Name=WP_014273596.1;gbkey=CDS;product=transposase;protein_id=WP_014273596.1;transl_table=11
NC_012633.1	RefSeq	gene	790437	790916	.	-	.	ID=gene843;Name=RAF_RS04230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04230;old_locus_tag=RAF_ORF0754
NC_012633.1	Protein Homology	CDS	790437	790916	.	-	0	ID=cds821;Parent=gene843;Dbxref=Genbank:WP_012719834.1;Name=WP_012719834.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719834.1;transl_table=11
NC_012633.1	RefSeq	gene	791376	791723	.	-	.	ID=gene844;Name=RAF_RS04235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04235;old_locus_tag=RAF_ORF0755
NC_012633.1	Protein Homology	CDS	791376	791723	.	-	0	ID=cds822;Parent=gene844;Dbxref=Genbank:WP_041471890.1;Name=WP_041471890.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471890.1;transl_table=11
NC_012633.1	RefSeq	gene	792119	792325	.	+	.	ID=gene845;Name=RAF_RS04240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04240
NC_012633.1	Protein Homology	CDS	792119	792325	.	+	0	ID=cds823;Parent=gene845;Dbxref=Genbank:WP_041471891.1;Name=WP_041471891.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471891.1;transl_table=11
NC_012633.1	RefSeq	gene	792311	793076	.	-	.	ID=gene846;Name=RAF_RS04245;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS04245;pseudo=true
NC_012633.1	Protein Homology	CDS	792311	793076	.	-	0	ID=cds824;Parent=gene846;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	793169	793396	.	-	.	ID=gene847;Name=RAF_RS04250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04250;old_locus_tag=RAF_ORF0757
NC_012633.1	Protein Homology	CDS	793169	793396	.	-	0	ID=cds825;Parent=gene847;Dbxref=Genbank:WP_012719837.1;Name=WP_012719837.1;gbkey=CDS;product=MFS transporter;protein_id=WP_012719837.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	793378	793477	.	+	.	ID=id402;gbkey=repeat_region
NC_012633.1	RefSeq	gene	793518	793919	.	-	.	ID=gene848;Name=RAF_RS04255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04255;old_locus_tag=RAF_ORF0758
NC_012633.1	Protein Homology	CDS	793518	793919	.	-	0	ID=cds826;Parent=gene848;Dbxref=Genbank:WP_012719838.1;Name=WP_012719838.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719838.1;transl_table=11
NC_012633.1	RefSeq	gene	793931	794155	.	-	.	ID=gene849;Name=RAF_RS04260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04260
NC_012633.1	Protein Homology	CDS	793931	794155	.	-	0	ID=cds827;Parent=gene849;Dbxref=Genbank:WP_010977441.1;Name=WP_010977441.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010977441.1;transl_table=11
NC_012633.1	RefSeq	gene	794375	800053	.	+	.	ID=gene850;Name=RAF_RS04265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04265;old_locus_tag=RAF_ORF0759
NC_012633.1	Protein Homology	CDS	794375	800053	.	+	0	ID=cds828;Parent=gene850;Dbxref=Genbank:WP_012719839.1;Name=WP_012719839.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719839.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	800120	800237	.	-	.	ID=id403;Note=RAF_REPEAT363_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	800247	800545	.	-	.	ID=gene851;Name=RAF_RS04270;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS04270;pseudo=true
NC_012633.1	Protein Homology	CDS	800247	800545	.	-	0	ID=cds829;Parent=gene851;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	801095	801307	.	-	.	ID=gene852;Name=RAF_RS04275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04275
NC_012633.1	GeneMarkS+	CDS	801095	801307	.	-	0	ID=cds830;Parent=gene852;Dbxref=Genbank:WP_041471892.1;Name=WP_041471892.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471892.1;transl_table=11
NC_012633.1	RefSeq	gene	801581	801949	.	-	.	ID=gene853;Name=RAF_RS04280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04280
NC_012633.1	Protein Homology	CDS	801581	801949	.	-	0	ID=cds831;Parent=gene853;Dbxref=Genbank:WP_041471893.1;Name=WP_041471893.1;gbkey=CDS;product=3-hydroxyacyl-CoA dehydrogenase;protein_id=WP_041471893.1;transl_table=11
NC_012633.1	RefSeq	gene	801951	802418	.	-	.	ID=gene854;Name=RAF_RS04285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04285
NC_012633.1	Protein Homology	CDS	801951	802418	.	-	0	ID=cds832;Parent=gene854;Dbxref=Genbank:WP_041471894.1;Name=WP_041471894.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471894.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	802432	802524	.	+	.	ID=id404;Note=RAF_REPEAT364_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	802506	802871	.	-	.	ID=gene855;Name=RAF_RS04290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04290;old_locus_tag=RAF_ORF0765
NC_012633.1	Protein Homology	CDS	802506	802871	.	-	0	ID=cds833;Parent=gene855;Dbxref=Genbank:WP_012719840.1;Name=WP_012719840.1;gbkey=CDS;product=competence protein ComF;protein_id=WP_012719840.1;transl_table=11
NC_012633.1	RefSeq	gene	802864	803211	.	-	.	ID=gene856;Name=RAF_RS04295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04295;old_locus_tag=RAF_ORF0766
NC_012633.1	Protein Homology	CDS	802864	803211	.	-	0	ID=cds834;Parent=gene856;Dbxref=Genbank:WP_012719841.1;Name=WP_012719841.1;gbkey=CDS;product=competence protein ComF;protein_id=WP_012719841.1;transl_table=11
NC_012633.1	RefSeq	gene	803255	803722	.	-	.	ID=gene857;Name=RAF_RS04300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04300
NC_012633.1	Protein Homology	CDS	803255	803722	.	-	0	ID=cds835;Parent=gene857;Dbxref=Genbank:WP_041471895.1;Name=WP_041471895.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471895.1;transl_table=11
NC_012633.1	RefSeq	gene	804118	804360	.	-	.	ID=gene858;Name=RAF_RS04305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04305
NC_012633.1	Protein Homology	CDS	804118	804360	.	-	0	ID=cds836;Parent=gene858;Dbxref=Genbank:WP_041471896.1;Name=WP_041471896.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471896.1;transl_table=11
NC_012633.1	RefSeq	gene	804550	804816	.	-	.	ID=gene859;Name=RAF_RS04310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04310;old_locus_tag=RAF_ORF0770
NC_012633.1	Protein Homology	CDS	804550	804816	.	-	0	ID=cds837;Parent=gene859;Dbxref=Genbank:WP_012719842.1;Name=WP_012719842.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719842.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	804858	804961	.	-	.	ID=id405;Note=RAF_REPEAT365_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	804994	806280	.	-	.	ID=gene860;Name=RAF_RS04315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04315;old_locus_tag=RAF_ORF0771
NC_012633.1	Protein Homology	CDS	804994	806280	.	-	0	ID=cds838;Parent=gene860;Dbxref=Genbank:WP_041471897.1;Name=WP_041471897.1;Note=Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1%2C4-benzoquinone;gbkey=CDS;product=2-octaprenyl-6-methoxyphenyl hydroxylase;protein_id=WP_041471897.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	806113	806259	.	-	.	ID=id406;Note=RAF_REPEAT366_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	806261	806527	.	-	.	ID=gene861;Name=RAF_RS04320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04320;old_locus_tag=RAF_ORF0772
NC_012633.1	Protein Homology	CDS	806261	806527	.	-	0	ID=cds839;Parent=gene861;Dbxref=Genbank:WP_012719844.1;Name=WP_012719844.1;Note=subunit F of antiporter complex involved in resistance to high concentrations of Na+%2C K+%2C Li+ and/or alkali;gbkey=CDS;product=cation:proton antiporter;protein_id=WP_012719844.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	806571	806645	.	-	.	ID=id407;Note=RAF_REPEAT367_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	806890	807017	.	+	.	ID=id408;Note=RAF_REPEAT368_RPE-8%2C RPE-8 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	807044	808468	.	+	.	ID=gene862;Name=RAF_RS04325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04325;old_locus_tag=RAF_ORF0773
NC_012633.1	Protein Homology	CDS	807044	808468	.	+	0	ID=cds840;Parent=gene862;Dbxref=Genbank:WP_012719845.1;Name=WP_012719845.1;gbkey=CDS;product=ATPase AAA;protein_id=WP_012719845.1;transl_table=11
NC_012633.1	RefSeq	gene	808461	810206	.	+	.	ID=gene863;Name=RAF_RS04330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04330;old_locus_tag=RAF_ORF0774
NC_012633.1	Protein Homology	CDS	808461	810206	.	+	0	ID=cds841;Parent=gene863;Dbxref=Genbank:WP_041471898.1;Name=WP_041471898.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_041471898.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	810290	810422	.	-	.	ID=id409;Note=RAF_REPEAT369_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	810428	811387	.	-	.	ID=gene864;Name=RAF_RS04335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04335;old_locus_tag=RAF_ORF0775
NC_012633.1	Protein Homology	CDS	810428	811387	.	-	0	ID=cds842;Parent=gene864;Dbxref=Genbank:WP_012719847.1;Name=WP_012719847.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719847.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	811373	811506	.	-	.	ID=id410;Note=RAF_REPEAT370_RPE-8%2C RPE-8 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	811633	811728	.	+	.	ID=id411;Note=RAF_REPEAT371_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	812063	813844	.	-	.	ID=gene865;Name=RAF_RS04340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04340;old_locus_tag=RAF_ORF0776
NC_012633.1	Protein Homology	CDS	812063	813844	.	-	0	ID=cds843;Parent=gene865;Dbxref=Genbank:WP_012719848.1;Name=WP_012719848.1;gbkey=CDS;product=penicillin-binding protein;protein_id=WP_012719848.1;transl_table=11
NC_012633.1	RefSeq	gene	813834	814355	.	-	.	ID=gene866;Name=RAF_RS04345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04345;old_locus_tag=RAF_ORF0777
NC_012633.1	Protein Homology	CDS	813834	814355	.	-	0	ID=cds844;Parent=gene866;Dbxref=Genbank:WP_012719849.1;Name=WP_012719849.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719849.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	814418	814509	.	+	.	ID=id412;Note=RAF_REPEAT372_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	814605	814799	.	-	.	ID=gene867;Name=RAF_RS04350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04350
NC_012633.1	Protein Homology	CDS	814605	814799	.	-	0	ID=cds845;Parent=gene867;Dbxref=Genbank:WP_041471899.1;Name=WP_041471899.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471899.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	814872	814896	.	+	.	ID=id413;Note=RAF_REPEAT373_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	814974	816656	.	-	.	ID=gene868;Name=RAF_RS04355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04355;old_locus_tag=RAF_ORF0778
NC_012633.1	Protein Homology	CDS	814974	816656	.	-	0	ID=cds846;Parent=gene868;Dbxref=Genbank:WP_012719850.1;Name=WP_012719850.1;gbkey=CDS;product=penicillin-binding protein;protein_id=WP_012719850.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	816701	816848	.	+	.	ID=id414;Note=RAF_REPEAT374_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	816886	817010	.	+	.	ID=id415;Note=RAF_REPEAT375_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	817000	817398	.	-	.	ID=gene869;Name=RAF_RS04360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04360;old_locus_tag=RAF_ORF0779
NC_012633.1	Protein Homology	CDS	817000	817398	.	-	0	ID=cds847;Parent=gene869;Dbxref=Genbank:WP_004998104.1;Name=WP_004998104.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004998104.1;transl_table=11
NC_012633.1	RefSeq	gene	817405	818328	.	-	.	ID=gene870;Name=RAF_RS04365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04365;old_locus_tag=RAF_ORF0780
NC_012633.1	Protein Homology	CDS	817405	818328	.	-	0	ID=cds848;Parent=gene870;Dbxref=Genbank:WP_012719851.1;Name=WP_012719851.1;gbkey=CDS;product=ribosomal RNA small subunit methyltransferase H;protein_id=WP_012719851.1;transl_table=11
NC_012633.1	RefSeq	gene	818328	818777	.	-	.	ID=gene871;Name=RAF_RS04370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04370;old_locus_tag=RAF_ORF0781
NC_012633.1	Protein Homology	CDS	818328	818777	.	-	0	ID=cds849;Parent=gene871;Dbxref=Genbank:WP_010977464.1;Name=WP_010977464.1;gbkey=CDS;product=transcriptional regulator MraZ;protein_id=WP_010977464.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	818871	818969	.	-	.	ID=id416;Note=RAF_REPEAT376_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	818970	818994	.	+	.	ID=id417;Note=RAF_REPEAT377_RR-2%2C RR-2 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	819191	819709	.	+	.	ID=gene872;Name=RAF_RS04375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04375;old_locus_tag=RAF_ORF0782
NC_012633.1	Protein Homology	CDS	819191	819709	.	+	0	ID=cds850;Parent=gene872;Dbxref=Genbank:WP_012719852.1;Name=WP_012719852.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719852.1;transl_table=11
NC_012633.1	RefSeq	gene	819747	819926	.	+	.	ID=gene873;Name=RAF_RS04380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04380
NC_012633.1	GeneMarkS+	CDS	819747	819926	.	+	0	ID=cds851;Parent=gene873;Dbxref=Genbank:WP_041471900.1;Name=WP_041471900.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471900.1;transl_table=11
NC_012633.1	RefSeq	gene	820358	821755	.	+	.	ID=gene874;Name=RAF_RS04385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04385;old_locus_tag=RAF_ORF0783
NC_012633.1	Protein Homology	CDS	820358	821755	.	+	0	ID=cds852;Parent=gene874;Dbxref=Genbank:WP_012719853.1;Name=WP_012719853.1;gbkey=CDS;product=sodium:pantothenate symporter;protein_id=WP_012719853.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	822224	822343	.	-	.	ID=id418;Note=RAF_REPEAT378_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	822382	824301	.	-	.	ID=gene875;Name=RAF_RS04390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04390;old_locus_tag=RAF_ORF0784
NC_012633.1	Protein Homology	CDS	822382	824301	.	-	0	ID=cds853;Parent=gene875;Dbxref=Genbank:WP_012719854.1;Name=WP_012719854.1;gbkey=CDS;product=UvrABC system protein C;protein_id=WP_012719854.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	822926	822991	.	-	.	ID=id419;Note=RAF_REPEAT379_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	824317	824447	.	+	.	ID=id420;Note=RAF_REPEAT380_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	824476	825009	.	-	.	ID=gene876;Name=RAF_RS04395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04395;old_locus_tag=RAF_ORF0785
NC_012633.1	Protein Homology	CDS	824476	825009	.	-	0	ID=cds854;Parent=gene876;Dbxref=Genbank:WP_012719855.1;Name=WP_012719855.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719855.1;transl_table=11
NC_012633.1	RefSeq	gene	825063	825585	.	-	.	ID=gene877;Name=RAF_RS04400;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS04400;pseudo=true
NC_012633.1	Protein Homology	CDS	825063	825585	.	-	0	ID=cds855;Parent=gene877;exception=annotated by transcript or proteomic data;gbkey=CDS;product=DNA alkylation repair protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	825487	825742	.	-	.	ID=gene878;Name=RAF_RS04405;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS04405;partial=true;pseudo=true;start_range=.,825487
NC_012633.1	Protein Homology	CDS	825487	825742	.	-	0	ID=cds856;Parent=gene878;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=DNA alkylation repair protein;pseudo=true;start_range=.,825487;transl_table=11
NC_012633.1	RefSeq	gene	825723	826794	.	-	.	ID=gene879;Name=RAF_RS04410;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS04410;pseudo=true
NC_012633.1	Protein Homology	CDS	825723	826794	.	-	0	ID=cds857;Parent=gene879;exception=annotated by transcript or proteomic data;gbkey=CDS;product=cysteine methyltransferase;pseudo=true;transl_except=(pos:complement(826074..826076)%2Caa:Other),(pos:complement(826008..826010)%2Caa:Other),(pos:complement(825930..825932)%2Caa:Other);transl_table=11
NC_012633.1	RefSeq	gene	826884	827390	.	-	.	ID=gene880;Name=RAF_RS04415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04415;old_locus_tag=RAF_ORF0789
NC_012633.1	Protein Homology	CDS	826884	827390	.	-	0	ID=cds858;Parent=gene880;Dbxref=Genbank:WP_012719857.1;Name=WP_012719857.1;gbkey=CDS;product=methylated-DNA--protein-cysteine methyltransferase;protein_id=WP_012719857.1;transl_table=11
NC_012633.1	RefSeq	gene	827680	827871	.	+	.	ID=gene881;Name=RAF_RS04420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04420
NC_012633.1	Protein Homology	CDS	827680	827871	.	+	0	ID=cds859;Parent=gene881;Dbxref=Genbank:WP_014410869.1;Name=WP_014410869.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_014410869.1;transl_table=11
NC_012633.1	RefSeq	gene	828162	828293	.	-	.	ID=gene882;Name=RAF_RS04425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04425
NC_012633.1	Protein Homology	CDS	828162	828293	.	-	0	ID=cds860;Parent=gene882;Dbxref=Genbank:WP_014410871.1;Name=WP_014410871.1;gbkey=CDS;product=type I restriction endonuclease subunit R;protein_id=WP_014410871.1;transl_table=11
NC_012633.1	RefSeq	gene	828339	828755	.	-	.	ID=gene883;Name=RAF_RS04430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04430
NC_012633.1	Protein Homology	CDS	828339	828755	.	-	0	ID=cds861;Parent=gene883;Dbxref=Genbank:WP_041471901.1;Name=WP_041471901.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471901.1;transl_table=11
NC_012633.1	RefSeq	gene	828779	828997	.	-	.	ID=gene884;Name=RAF_RS04435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04435
NC_012633.1	Protein Homology	CDS	828779	828997	.	-	0	ID=cds862;Parent=gene884;Dbxref=Genbank:WP_004998084.1;Name=WP_004998084.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004998084.1;transl_table=11
NC_012633.1	RefSeq	gene	829202	829671	.	-	.	ID=gene885;Name=RAF_RS04440;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS04440;pseudo=true
NC_012633.1	Protein Homology	CDS	829202	829671	.	-	0	ID=cds863;Parent=gene885;exception=annotated by transcript or proteomic data;gbkey=CDS;product=restriction endonuclease subunit R;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	829744	830217	.	-	.	ID=gene886;Name=RAF_RS04445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04445;old_locus_tag=RAF_ORF0793
NC_012633.1	Protein Homology	CDS	829744	830217	.	-	0	ID=cds864;Parent=gene886;Dbxref=Genbank:WP_012719858.1;Name=WP_012719858.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719858.1;transl_table=11
NC_012633.1	RefSeq	gene	830677	830751	.	-	.	ID=gene887;Name=RAF_RS04450;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS04450;old_locus_tag=RAF_RNA23
NC_012633.1	tRNAscan-SE	tRNA	830677	830751	.	-	.	ID=rna22;Parent=gene887;anticodon=(pos:complement(830717..830719));gbkey=tRNA;product=tRNA-Ala
NC_012633.1	tRNAscan-SE	exon	830677	830751	.	-	.	ID=id421;Parent=rna22;anticodon=(pos:complement(830717..830719));gbkey=tRNA;product=tRNA-Ala
NC_012633.1	RefSeq	gene	830788	830997	.	-	.	ID=gene888;Name=RAF_RS04455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04455;old_locus_tag=RAF_ORF0794
NC_012633.1	Protein Homology	CDS	830788	830997	.	-	0	ID=cds865;Parent=gene888;Dbxref=Genbank:WP_004998070.1;Name=WP_004998070.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004998070.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	831118	831202	.	-	.	ID=id422;Note=RAF_REPEAT381_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	831323	831565	.	-	.	ID=gene889;Name=RAF_RS04460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04460;old_locus_tag=RAF_ORF0795
NC_012633.1	Protein Homology	CDS	831323	831565	.	-	0	ID=cds866;Parent=gene889;Dbxref=Genbank:WP_012719859.1;Name=WP_012719859.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719859.1;transl_table=11
NC_012633.1	RefSeq	gene	831785	832015	.	-	.	ID=gene890;Name=RAF_RS04465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04465
NC_012633.1	Protein Homology	CDS	831785	832015	.	-	0	ID=cds867;Parent=gene890;Dbxref=Genbank:WP_032850888.1;Name=WP_032850888.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032850888.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	832101	832201	.	+	.	ID=id423;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	832127	832201	.	+	.	ID=id424;Note=RAF_REPEAT382_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	832441	832591	.	+	.	ID=id425;Note=RAF_REPEAT383_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	832626	835346	.	-	.	ID=gene891;Name=RAF_RS04470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04470;old_locus_tag=RAF_ORF0796
NC_012633.1	Protein Homology	CDS	832626	835346	.	-	0	ID=cds868;Parent=gene891;Dbxref=Genbank:WP_012719860.1;Name=WP_012719860.1;gbkey=CDS;product=protein translocase subunit SecA;protein_id=WP_012719860.1;transl_table=11
NC_012633.1	RefSeq	gene	835562	836410	.	+	.	ID=gene892;Name=RAF_RS04475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04475;old_locus_tag=RAF_ORF0797
NC_012633.1	Protein Homology	CDS	835562	836410	.	+	0	ID=cds869;Parent=gene892;Dbxref=Genbank:WP_012719861.1;Name=WP_012719861.1;gbkey=CDS;product=parvulin-like PPIase;protein_id=WP_012719861.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	836458	836532	.	-	.	ID=id426;Note=RAF_REPEAT384_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	836571	836597	.	+	.	ID=id427;Note=RAF_REPEAT385_RR-1%2C RR-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	836620	837015	.	-	.	ID=gene893;Name=RAF_RS04480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04480;old_locus_tag=RAF_ORF0798
NC_012633.1	Protein Homology	CDS	836620	837015	.	-	0	ID=cds870;Parent=gene893;Dbxref=Genbank:WP_012719862.1;Name=WP_012719862.1;gbkey=CDS;product=holo-ACP synthase;protein_id=WP_012719862.1;transl_table=11
NC_012633.1	RefSeq	gene	837016	837399	.	-	.	ID=gene894;Name=RAF_RS04485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04485;old_locus_tag=RAF_ORF0799
NC_012633.1	Protein Homology	CDS	837016	837399	.	-	0	ID=cds871;Parent=gene894;Dbxref=Genbank:WP_010977486.1;Name=WP_010977486.1;gbkey=CDS;product=DNA-directed RNA polymerase subunit omega;protein_id=WP_010977486.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	837448	837586	.	+	.	ID=id428;Note=RAF_REPEAT386_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	837588	838847	.	-	.	ID=gene895;Name=RAF_RS04490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04490;old_locus_tag=RAF_ORF0800
NC_012633.1	Protein Homology	CDS	837588	838847	.	-	0	ID=cds872;Parent=gene895;Dbxref=Genbank:WP_012719863.1;Name=WP_012719863.1;Note=adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation%3B gram-positive bacteria have 2 copies of MurA which are active;gbkey=CDS;product=UDP-N-acetylglucosamine 1-carboxyvinyltransferase;protein_id=WP_012719863.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	838903	838930	.	+	.	ID=id429;Note=RAF_REPEAT387_RPE-4%2C RPE-4 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	838939	841362	.	-	.	ID=gene896;Name=RAF_RS04495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04495;old_locus_tag=RAF_ORF0801
NC_012633.1	Protein Homology	CDS	838939	841362	.	-	0	ID=cds873;Parent=gene896;Dbxref=Genbank:WP_012719864.1;Name=WP_012719864.1;gbkey=CDS;product=DNA gyrase subunit B;protein_id=WP_012719864.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	841507	841574	.	-	.	ID=id430;Note=RAF_REPEAT388_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	841642	842502	.	+	.	ID=gene897;Name=RAF_RS04500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04500;old_locus_tag=RAF_ORF0802
NC_012633.1	Protein Homology	CDS	841642	842502	.	+	0	ID=cds874;Parent=gene897;Dbxref=Genbank:WP_012719865.1;Name=WP_012719865.1;gbkey=CDS;product=haloacid dehalogenase;protein_id=WP_012719865.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	842555	842579	.	+	.	ID=id431;Note=RAF_REPEAT389_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	842657	842743	.	+	.	ID=gene898;Name=RAF_RS04505;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS04505;old_locus_tag=RAF_RNA24
NC_012633.1	tRNAscan-SE	tRNA	842657	842743	.	+	.	ID=rna23;Parent=gene898;anticodon=(pos:842691..842693);gbkey=tRNA;product=tRNA-Leu
NC_012633.1	tRNAscan-SE	exon	842657	842743	.	+	.	ID=id432;Parent=rna23;anticodon=(pos:842691..842693);gbkey=tRNA;product=tRNA-Leu
NC_012633.1	RefSeq	gene	843008	844378	.	+	.	ID=gene899;Name=RAF_RS04510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04510;old_locus_tag=RAF_ORF0803
NC_012633.1	Protein Homology	CDS	843008	844378	.	+	0	ID=cds875;Parent=gene899;Dbxref=Genbank:WP_010977490.1;Name=WP_010977490.1;gbkey=CDS;product=magnesium transporter;protein_id=WP_010977490.1;transl_table=11
NC_012633.1	RefSeq	gene	844382	844669	.	-	.	ID=gene900;Name=RAF_RS04515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04515;old_locus_tag=RAF_ORF0804
NC_012633.1	Protein Homology	CDS	844382	844669	.	-	0	ID=cds876;Parent=gene900;Dbxref=Genbank:WP_012719866.1;Name=WP_012719866.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719866.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	844721	844855	.	-	.	ID=id433;Note=RAF_REPEAT390_RPE-8%2C RPE-8 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	845070	845674	.	+	.	ID=gene901;Name=RAF_RS04520;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS04520;pseudo=true
NC_012633.1	Protein Homology	CDS	845070	845674	.	+	0	ID=cds877;Parent=gene901;exception=annotated by transcript or proteomic data;gbkey=CDS;product=guanosine polyphosphate pyrophosphohydrolase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	845714	846055	.	-	.	ID=gene902;Name=RAF_RS04525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04525;old_locus_tag=RAF_ORF0806
NC_012633.1	Protein Homology	CDS	845714	846055	.	-	0	ID=cds878;Parent=gene902;Dbxref=Genbank:WP_041471902.1;Name=WP_041471902.1;gbkey=CDS;product=proline/betaine transporter;protein_id=WP_041471902.1;transl_table=11
NC_012633.1	RefSeq	gene	846212	846511	.	-	.	ID=gene903;Name=RAF_RS04530;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS04530;pseudo=true
NC_012633.1	Protein Homology	CDS	846212	846511	.	-	0	ID=cds879;Parent=gene903;gbkey=CDS;product=proline/betaine transporter;pseudo=true;transl_except=(pos:complement(846470..846472)%2Caa:Other);transl_table=11
NC_012633.1	RefSeq	gene	846514	846636	.	-	.	ID=gene904;Name=RAF_RS04535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04535
NC_012633.1	Protein Homology	CDS	846514	846636	.	-	0	ID=cds880;Parent=gene904;Dbxref=Genbank:WP_041471903.1;Name=WP_041471903.1;gbkey=CDS;product=proline/betaine transporter;protein_id=WP_041471903.1;transl_table=11
NC_012633.1	RefSeq	gene	846753	846986	.	+	.	ID=gene905;Name=RAF_RS04540;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS04540;pseudo=true
NC_012633.1	Protein Homology	CDS	846753	846986	.	+	0	ID=cds881;Parent=gene905;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:846921..846923%2Caa:Other);transl_table=11
NC_012633.1	RefSeq	repeat_region	847168	847261	.	+	.	ID=id434;Note=RAF_REPEAT391_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	847448	847522	.	+	.	ID=gene906;Name=RAF_RS04545;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS04545;old_locus_tag=RAF_RNA25
NC_012633.1	tRNAscan-SE	tRNA	847448	847522	.	+	.	ID=rna24;Parent=gene906;anticodon=(pos:847480..847482);gbkey=tRNA;product=tRNA-Gly
NC_012633.1	tRNAscan-SE	exon	847448	847522	.	+	.	ID=id435;Parent=rna24;anticodon=(pos:847480..847482);gbkey=tRNA;product=tRNA-Gly
NC_012633.1	RefSeq	repeat_region	847546	847569	.	+	.	ID=id436;Note=RAF_REPEAT392_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	847637	847819	.	-	.	ID=gene907;Name=RAF_RS04550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04550
NC_012633.1	Protein Homology	CDS	847637	847819	.	-	0	ID=cds882;Parent=gene907;Dbxref=Genbank:WP_004998028.1;Name=WP_004998028.1;gbkey=CDS;product=antitoxin;protein_id=WP_004998028.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	847928	848046	.	+	.	ID=id437;Note=RAF_REPEAT393_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	848135	848172	.	+	.	ID=id438;Note=RAF_REPEAT394_RPE-1%2C RPE-1 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	848198	848623	.	+	.	ID=gene908;Name=RAF_RS04555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04555
NC_012633.1	Protein Homology	CDS	848198	848623	.	+	0	ID=cds883;Parent=gene908;Dbxref=Genbank:WP_041472031.1;Name=WP_041472031.1;gbkey=CDS;product=preprotein translocase subunit YajC;protein_id=WP_041472031.1;transl_table=11
NC_012633.1	RefSeq	gene	848607	850163	.	+	.	ID=gene909;Name=RAF_RS04560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04560;old_locus_tag=RAF_ORF0810
NC_012633.1	Protein Homology	CDS	848607	850163	.	+	0	ID=cds884;Parent=gene909;Dbxref=Genbank:WP_012719870.1;Name=WP_012719870.1;gbkey=CDS;product=preprotein translocase subunit SecD;protein_id=WP_012719870.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	850193	850352	.	+	.	ID=id439;Note=RAF_REPEAT396_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	850193	850224	.	-	.	ID=id440;Note=RAF_REPEAT395_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	850408	851028	.	+	.	ID=gene910;Name=RAF_RS04565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04565;old_locus_tag=RAF_ORF0811
NC_012633.1	Protein Homology	CDS	850408	851028	.	+	0	ID=cds885;Parent=gene910;Dbxref=Genbank:WP_012719871.1;Name=WP_012719871.1;gbkey=CDS;product=photosynthetic protein synthase II;protein_id=WP_012719871.1;transl_table=11
NC_012633.1	RefSeq	gene	851130	851516	.	+	.	ID=gene911;Name=RAF_RS04570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04570;old_locus_tag=RAF_ORF0813
NC_012633.1	Protein Homology	CDS	851130	851516	.	+	0	ID=cds886;Parent=gene911;Dbxref=Genbank:WP_012719873.1;Name=WP_012719873.1;gbkey=CDS;product=cytochrome c-type biogenesis protein CcmE;protein_id=WP_012719873.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	851543	851611	.	+	.	ID=id441;Note=RAF_REPEAT397_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	851642	852163	.	+	.	ID=gene912;Name=RAF_RS04575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04575;old_locus_tag=RAF_ORF0814
NC_012633.1	Protein Homology	CDS	851642	852163	.	+	0	ID=cds887;Parent=gene912;Dbxref=Genbank:WP_012719874.1;Name=WP_012719874.1;gbkey=CDS;product=inorganic pyrophosphatase;protein_id=WP_012719874.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	852200	852347	.	+	.	ID=id442;Note=RAF_REPEAT398_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	852374	854041	.	+	.	ID=gene913;Name=RAF_RS04580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04580;old_locus_tag=RAF_ORF0815
NC_012633.1	Protein Homology	CDS	852374	854041	.	+	0	ID=cds888;Parent=gene913;Dbxref=Genbank:WP_012719875.1;Name=WP_012719875.1;gbkey=CDS;product=multidrug transporter MurJ;protein_id=WP_012719875.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	852379	852522	.	+	.	ID=id443;Note=RAF_REPEAT399_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	852397	852517	.	+	.	ID=id444;gbkey=repeat_region
NC_012633.1	RefSeq	gene	854022	854774	.	+	.	ID=gene914;Name=RAF_RS04585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04585;old_locus_tag=RAF_ORF0816
NC_012633.1	Protein Homology	CDS	854022	854774	.	+	0	ID=cds889;Parent=gene914;Dbxref=Genbank:WP_012719876.1;Name=WP_012719876.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719876.1;transl_table=11
NC_012633.1	RefSeq	gene	854848	855450	.	+	.	ID=gene915;Name=RAF_RS04590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04590;old_locus_tag=RAF_ORF0817
NC_012633.1	Protein Homology	CDS	854848	855450	.	+	0	ID=cds890;Parent=gene915;Dbxref=Genbank:WP_004998004.1;Name=WP_004998004.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004998004.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	855534	855602	.	+	.	ID=id445;Note=RAF_REPEAT400_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	855658	857799	.	-	.	ID=gene916;Name=RAF_RS04595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04595;old_locus_tag=RAF_ORF0818
NC_012633.1	Protein Homology	CDS	855658	857799	.	-	0	ID=cds891;Parent=gene916;Dbxref=Genbank:WP_012719877.1;Name=WP_012719877.1;gbkey=CDS;product=ATP-dependent DNA helicase RecG;protein_id=WP_012719877.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	857123	857195	.	+	.	ID=id446;Note=RAF_REPEAT401_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	857882	858002	.	+	.	ID=id447;Note=RAF_REPEAT402_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	858072	858644	.	-	.	ID=gene917;Name=RAF_RS04600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04600;old_locus_tag=RAF_ORF0819
NC_012633.1	Protein Homology	CDS	858072	858644	.	-	0	ID=cds892;Parent=gene917;Dbxref=Genbank:WP_012719878.1;Name=WP_012719878.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719878.1;transl_table=11
NC_012633.1	RefSeq	gene	858713	859020	.	-	.	ID=gene918;Name=RAF_RS04605;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS04605;pseudo=true
NC_012633.1	Protein Homology	CDS	858713	859020	.	-	0	ID=cds893;Parent=gene918;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	859213	859854	.	+	.	ID=gene919;Name=RAF_RS04610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04610;old_locus_tag=RAF_ORF0820
NC_012633.1	Protein Homology	CDS	859213	859854	.	+	0	ID=cds894;Parent=gene919;Dbxref=Genbank:WP_012719879.1;Name=WP_012719879.1;gbkey=CDS;product=succinyl-CoA--3-ketoacid-CoA transferase;protein_id=WP_012719879.1;transl_table=11
NC_012633.1	RefSeq	gene	859858	860493	.	+	.	ID=gene920;Name=RAF_RS04615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04615;old_locus_tag=RAF_ORF0821
NC_012633.1	Protein Homology	CDS	859858	860493	.	+	0	ID=cds895;Parent=gene920;Dbxref=Genbank:WP_012719880.1;Name=WP_012719880.1;gbkey=CDS;product=succinyl-CoA--3-ketoacid-CoA transferase;protein_id=WP_012719880.1;transl_table=11
NC_012633.1	RefSeq	gene	860697	860870	.	+	.	ID=gene921;Name=RAF_RS04620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04620
NC_012633.1	Protein Homology	CDS	860697	860870	.	+	0	ID=cds896;Parent=gene921;Dbxref=Genbank:WP_041471904.1;Name=WP_041471904.1;gbkey=CDS;product=flavodoxin;protein_id=WP_041471904.1;transl_table=11
NC_012633.1	RefSeq	gene	860867	861082	.	+	.	ID=gene922;Name=RAF_RS04625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04625
NC_012633.1	Protein Homology	CDS	860867	861082	.	+	0	ID=cds897;Parent=gene922;Dbxref=Genbank:WP_041471905.1;Name=WP_041471905.1;gbkey=CDS;product=Trp operon repressor;protein_id=WP_041471905.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	861099	861122	.	-	.	ID=id448;Note=RAF_REPEAT403_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	861131	862624	.	-	.	ID=gene923;Name=RAF_RS04630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04630;old_locus_tag=RAF_ORF0824
NC_012633.1	Protein Homology	CDS	861131	862624	.	-	0	ID=cds898;Parent=gene923;Dbxref=Genbank:WP_041471906.1;Name=WP_041471906.1;gbkey=CDS;product=Arp2/3 complex-activating protein rickA;protein_id=WP_041471906.1;transl_table=11
NC_012633.1	RefSeq	gene	862743	863828	.	-	.	ID=gene924;Name=mraY;gbkey=Gene;gene=mraY;gene_biotype=protein_coding;locus_tag=RAF_RS04635;old_locus_tag=RAF_ORF0825
NC_012633.1	Protein Homology	CDS	862743	863828	.	-	0	ID=cds899;Parent=gene924;Dbxref=Genbank:WP_012719882.1;Name=WP_012719882.1;Note=First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan;gbkey=CDS;gene=mraY;product=phospho-N-acetylmuramoyl-pentapeptide transferase;protein_id=WP_012719882.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	863916	863981	.	+	.	ID=id449;Note=RAF_REPEAT404_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	864023	865372	.	-	.	ID=gene925;Name=RAF_RS04640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04640;old_locus_tag=RAF_ORF0826
NC_012633.1	Protein Homology	CDS	864023	865372	.	-	0	ID=cds900;Parent=gene925;Dbxref=Genbank:WP_012719883.1;Name=WP_012719883.1;gbkey=CDS;product=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;protein_id=WP_012719883.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	865411	865547	.	-	.	ID=id450;Note=RAF_REPEAT405_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	865581	867020	.	-	.	ID=gene926;Name=RAF_RS04645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04645;old_locus_tag=RAF_ORF0827
NC_012633.1	Protein Homology	CDS	865581	867020	.	-	0	ID=cds901;Parent=gene926;Dbxref=Genbank:WP_012719884.1;Name=WP_012719884.1;gbkey=CDS;product=UDP-N-acetylmuramoylalanyl-D-glutamate--2%2C 6-diaminopimelate ligase;protein_id=WP_012719884.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	867047	867121	.	-	.	ID=id451;Note=RAF_REPEAT406_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	867167	870535	.	-	.	ID=gene927;Name=RAF_RS04650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04650;old_locus_tag=RAF_ORF0828
NC_012633.1	Protein Homology	CDS	867167	870535	.	-	0	ID=cds902;Parent=gene927;Dbxref=Genbank:WP_012719885.1;Name=WP_012719885.1;gbkey=CDS;product=transcription-repair coupling factor;protein_id=WP_012719885.1;transl_table=11
NC_012633.1	RefSeq	gene	870547	870810	.	-	.	ID=gene928;Name=RAF_RS04655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04655;old_locus_tag=RAF_ORF0829
NC_012633.1	Protein Homology	CDS	870547	870810	.	-	0	ID=cds903;Parent=gene928;Dbxref=Genbank:WP_004997963.1;Name=WP_004997963.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004997963.1;transl_table=11
NC_012633.1	RefSeq	gene	870972	871343	.	+	.	ID=gene929;Name=RAF_RS04660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04660;old_locus_tag=RAF_ORF0830
NC_012633.1	Protein Homology	CDS	870972	871343	.	+	0	ID=cds904;Parent=gene929;Dbxref=Genbank:WP_004997961.1;Name=WP_004997961.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004997961.1;transl_table=11
NC_012633.1	RefSeq	gene	871344	872735	.	+	.	ID=gene930;Name=RAF_RS04665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04665;old_locus_tag=RAF_ORF0831
NC_012633.1	Protein Homology	CDS	871344	872735	.	+	0	ID=cds905;Parent=gene930;Dbxref=Genbank:WP_012719886.1;Name=WP_012719886.1;gbkey=CDS;product=chromosomal replication initiator protein DnaA;protein_id=WP_012719886.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	872789	872908	.	-	.	ID=id452;Note=RAF_REPEAT407_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	873517	873756	.	-	.	ID=gene931;Name=RAF_RS04670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04670
NC_012633.1	Protein Homology	CDS	873517	873756	.	-	0	ID=cds906;Parent=gene931;Dbxref=Genbank:WP_049752710.1;Name=WP_049752710.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_049752710.1;transl_table=11
NC_012633.1	RefSeq	gene	873795	874109	.	-	.	ID=gene932;Name=RAF_RS04675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04675
NC_012633.1	Protein Homology	CDS	873795	874109	.	-	0	ID=cds907;Parent=gene932;Dbxref=Genbank:WP_041471908.1;Name=WP_041471908.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471908.1;transl_table=11
NC_012633.1	RefSeq	gene	874122	874541	.	-	.	ID=gene933;Name=RAF_RS04680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04680
NC_012633.1	Protein Homology	CDS	874122	874541	.	-	0	ID=cds908;Parent=gene933;Dbxref=Genbank:WP_041472032.1;Name=WP_041472032.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041472032.1;transl_table=11
NC_012633.1	RefSeq	gene	875352	875670	.	-	.	ID=gene934;Name=RAF_RS04685;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS04685;pseudo=true
NC_012633.1	Protein Homology	CDS	875352	875670	.	-	0	ID=cds909;Parent=gene934;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	875866	877338	.	+	.	ID=gene935;Name=RAF_RS04690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04690;old_locus_tag=RAF_ORF0835
NC_012633.1	Protein Homology	CDS	875866	877338	.	+	0	ID=cds910;Parent=gene935;Dbxref=Genbank:WP_012719888.1;Name=WP_012719888.1;gbkey=CDS;product=patatin;protein_id=WP_012719888.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	877347	877465	.	+	.	ID=id453;Note=RAF_REPEAT408_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	877527	877661	.	-	.	ID=gene936;Name=RAF_RS04695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04695
NC_012633.1	Protein Homology	CDS	877527	877661	.	-	0	ID=cds911;Parent=gene936;Dbxref=Genbank:WP_014410904.1;Name=WP_014410904.1;gbkey=CDS;product=bicyclomycin resistance protein;protein_id=WP_014410904.1;transl_table=11
NC_012633.1	RefSeq	gene	877952	878257	.	-	.	ID=gene937;Name=RAF_RS04700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04700
NC_012633.1	Protein Homology	CDS	877952	878257	.	-	0	ID=cds912;Parent=gene937;Dbxref=Genbank:WP_041471909.1;Name=WP_041471909.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471909.1;transl_table=11
NC_012633.1	RefSeq	gene	878773	878988	.	-	.	ID=gene938;Name=RAF_RS04705;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS04705;pseudo=true
NC_012633.1	Protein Homology	CDS	878773	878988	.	-	0	ID=cds913;Parent=gene938;gbkey=CDS;product=nucleotidyltransferase;pseudo=true;transl_except=(pos:complement(878848..878850)%2Caa:Other);transl_table=11
NC_012633.1	RefSeq	gene	878972	879211	.	-	.	ID=gene939;Name=RAF_RS04710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04710
NC_012633.1	Protein Homology	CDS	878972	879211	.	-	0	ID=cds914;Parent=gene939;Dbxref=Genbank:WP_041471910.1;Name=WP_041471910.1;gbkey=CDS;product=nucleotidyltransferase;protein_id=WP_041471910.1;transl_table=11
NC_012633.1	RefSeq	gene	879421	879624	.	-	.	ID=gene940;Name=RAF_RS04715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04715
NC_012633.1	Protein Homology	CDS	879421	879624	.	-	0	ID=cds915;Parent=gene940;Dbxref=Genbank:WP_014410906.1;Name=WP_014410906.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_014410906.1;transl_table=11
NC_012633.1	RefSeq	gene	879671	880768	.	-	.	ID=gene941;Name=RAF_RS04720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04720;old_locus_tag=RAF_ORF0841
NC_012633.1	Protein Homology	CDS	879671	880768	.	-	0	ID=cds916;Parent=gene941;Dbxref=Genbank:WP_010977527.1;Name=WP_010977527.1;gbkey=CDS;product=GTP-binding protein;protein_id=WP_010977527.1;transl_table=11
NC_012633.1	RefSeq	gene	880765	880935	.	-	.	ID=gene942;Name=RAF_RS04725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04725;old_locus_tag=RAF_ORF0842
NC_012633.1	Protein Homology	CDS	880765	880935	.	-	0	ID=cds917;Parent=gene942;Dbxref=Genbank:WP_004997930.1;Name=WP_004997930.1;gbkey=CDS;product=acetyltransferase;protein_id=WP_004997930.1;transl_table=11
NC_012633.1	RefSeq	gene	880962	881192	.	-	.	ID=gene943;Name=RAF_RS04730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04730
NC_012633.1	Protein Homology	CDS	880962	881192	.	-	0	ID=cds918;Parent=gene943;Dbxref=Genbank:WP_041471911.1;Name=WP_041471911.1;gbkey=CDS;product=acetyltransferase;protein_id=WP_041471911.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	881264	881338	.	+	.	ID=id454;Note=RAF_REPEAT409_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	881397	881954	.	-	.	ID=gene944;Name=RAF_RS04735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04735;old_locus_tag=RAF_ORF0843
NC_012633.1	Protein Homology	CDS	881397	881954	.	-	0	ID=cds919;Parent=gene944;Dbxref=Genbank:WP_012719889.1;Name=WP_012719889.1;gbkey=CDS;product=peptidyl-tRNA hydrolase;protein_id=WP_012719889.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	882072	882152	.	-	.	ID=id455;Note=RAF_REPEAT410_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	882277	882888	.	-	.	ID=gene945;Name=RAF_RS04740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04740;old_locus_tag=RAF_ORF0844
NC_012633.1	Protein Homology	CDS	882277	882888	.	-	0	ID=cds920;Parent=gene945;Dbxref=Genbank:WP_012719890.1;Name=WP_012719890.1;gbkey=CDS;product=50S ribosomal protein L25;protein_id=WP_012719890.1;transl_table=11
NC_012633.1	RefSeq	gene	883634	884311	.	-	.	ID=gene946;Name=RAF_RS04745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04745;old_locus_tag=RAF_ORF0845
NC_012633.1	Protein Homology	CDS	883634	884311	.	-	0	ID=cds921;Parent=gene946;Dbxref=Genbank:WP_004997925.1;Name=WP_004997925.1;gbkey=CDS;product=radical SAM protein;protein_id=WP_004997925.1;transl_table=11
NC_012633.1	RefSeq	gene	884478	884684	.	+	.	ID=gene947;Name=RAF_RS04750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04750
NC_012633.1	Protein Homology	CDS	884478	884684	.	+	0	ID=cds922;Parent=gene947;Dbxref=Genbank:WP_004997924.1;Name=WP_004997924.1;gbkey=CDS;product=50S ribosomal protein L35;protein_id=WP_004997924.1;transl_table=11
NC_012633.1	RefSeq	gene	884704	885057	.	+	.	ID=gene948;Name=rplT;gbkey=Gene;gene=rplT;gene_biotype=protein_coding;locus_tag=RAF_RS04755;old_locus_tag=RAF_ORF0847
NC_012633.1	Protein Homology	CDS	884704	885057	.	+	0	ID=cds923;Parent=gene948;Dbxref=Genbank:WP_004997919.1;Name=WP_004997919.1;Note=binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit;gbkey=CDS;gene=rplT;product=50S ribosomal protein L20;protein_id=WP_004997919.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	885050	885096	.	-	.	ID=id456;Note=RAF_REPEAT411_RPE-4%2C RPE-4 Part;gbkey=repeat_region;gene=rplT
NC_012633.1	RefSeq	gene	885140	885274	.	+	.	ID=gene949;Name=rpmH;gbkey=Gene;gene=rpmH;gene_biotype=protein_coding;locus_tag=RAF_RS04760;old_locus_tag=RAF_ORF0848
NC_012633.1	Protein Homology	CDS	885140	885274	.	+	0	ID=cds924;Parent=gene949;Dbxref=Genbank:WP_011270688.1;Name=WP_011270688.1;Note=in Escherichia coli transcription of this gene is enhanced by polyamines;gbkey=CDS;gene=rpmH;product=50S ribosomal protein L34;protein_id=WP_011270688.1;transl_table=11
NC_012633.1	RefSeq	gene	885294	885650	.	+	.	ID=gene950;Name=rnpA;gbkey=Gene;gene=rnpA;gene_biotype=protein_coding;locus_tag=RAF_RS04765;old_locus_tag=RAF_ORF0849
NC_012633.1	Protein Homology	CDS	885294	885650	.	+	0	ID=cds925;Parent=gene950;Dbxref=Genbank:WP_010977534.1;Name=WP_010977534.1;Note=protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus%3B this enzyme also cleaves other RNA substrates;gbkey=CDS;gene=rnpA;product=ribonuclease P protein component;protein_id=WP_010977534.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	885659	885802	.	+	.	ID=id457;Note=RAF_REPEAT412_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	885844	885936	.	-	.	ID=id458;Note=RAF_REPEAT413_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	885979	886003	.	-	.	ID=id459;Note=RAF_REPEAT414_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	886159	888099	.	-	.	ID=gene951;Name=RAF_RS04770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04770;old_locus_tag=RAF_ORF0850
NC_012633.1	Protein Homology	CDS	886159	888099	.	-	0	ID=cds926;Parent=gene951;Dbxref=Genbank:WP_012719891.1;Name=WP_012719891.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719891.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	886344	887169	.	+	.	ID=id460;gbkey=repeat_region
NC_012633.1	RefSeq	gene	888497	888756	.	-	.	ID=gene952;Name=RAF_RS04775;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS04775;pseudo=true
NC_012633.1	Protein Homology	CDS	888497	888756	.	-	0	ID=cds927;Parent=gene952;exception=annotated by transcript or proteomic data;gbkey=CDS;product=ribosomal protein S4E;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	889273	889506	.	-	.	ID=gene953;Name=RAF_RS04780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04780
NC_012633.1	Protein Homology	CDS	889273	889506	.	-	0	ID=cds928;Parent=gene953;Dbxref=Genbank:WP_041471912.1;Name=WP_041471912.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471912.1;transl_table=11
NC_012633.1	RefSeq	gene	889694	890011	.	-	.	ID=gene954;Name=RAF_RS04785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04785;old_locus_tag=RAF_ORF0851
NC_012633.1	Protein Homology	CDS	889694	890011	.	-	0	ID=cds929;Parent=gene954;Dbxref=Genbank:WP_012719892.1;Name=WP_012719892.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719892.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	890069	890172	.	+	.	ID=id461;Note=RAF_REPEAT415_RPE-2%2C RPE-2 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	890229	891188	.	-	.	ID=gene955;Name=RAF_RS04790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04790;old_locus_tag=RAF_ORF0852
NC_012633.1	Protein Homology	CDS	890229	891188	.	-	0	ID=cds930;Parent=gene955;Dbxref=Genbank:WP_010977540.1;Name=WP_010977540.1;gbkey=CDS;product=magnesium transporter;protein_id=WP_010977540.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	891279	891426	.	+	.	ID=id462;Note=RAF_REPEAT416_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	891591	891653	.	-	.	ID=id463;Note=RAF_REPEAT417_RPE-8%2C RPE-8 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	891877	892095	.	-	.	ID=gene956;Name=RAF_RS07085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07085
NC_012633.1	Protein Homology	CDS	891877	892095	.	-	0	ID=cds931;Parent=gene956;Dbxref=Genbank:WP_049752730.1;Name=WP_049752730.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_049752730.1;transl_table=11
NC_012633.1	RefSeq	gene	893136	894646	.	-	.	ID=gene957;Name=RAF_RS04800;gbkey=Gene;gene_biotype=rRNA;locus_tag=RAF_RS04800;old_locus_tag=RAF_RNA26
NC_012633.1	RefSeq	rRNA	893136	894646	.	-	.	ID=rna25;Parent=gene957;gbkey=rRNA;product=16S ribosomal RNA
NC_012633.1	RefSeq	exon	893136	894646	.	-	.	ID=id464;Parent=rna25;gbkey=rRNA;product=16S ribosomal RNA
NC_012633.1	RefSeq	gene	894973	895551	.	-	.	ID=gene958;Name=RAF_RS04805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04805
NC_012633.1	Protein Homology	CDS	894973	895551	.	-	0	ID=cds932;Parent=gene958;Dbxref=Genbank:WP_041471913.1;Name=WP_041471913.1;gbkey=CDS;product=aminoglycoside 3-N-acetyltransferase;protein_id=WP_041471913.1;transl_table=11
NC_012633.1	RefSeq	gene	895703	895849	.	-	.	ID=gene959;Name=RAF_RS04810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04810
NC_012633.1	Protein Homology	CDS	895703	895849	.	-	0	ID=cds933;Parent=gene959;Dbxref=Genbank:WP_014410918.1;Name=WP_014410918.1;gbkey=CDS;product=acetyltransferase;protein_id=WP_014410918.1;transl_table=11
NC_012633.1	RefSeq	gene	895942	897741	.	-	.	ID=gene960;Name=RAF_RS04815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04815;old_locus_tag=RAF_ORF0856
NC_012633.1	Protein Homology	CDS	895942	897741	.	-	0	ID=cds934;Parent=gene960;Dbxref=Genbank:WP_010977545.1;Name=WP_010977545.1;gbkey=CDS;product=histidine kinase;protein_id=WP_010977545.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	897870	898001	.	-	.	ID=id465;Note=RAF_REPEAT418_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	898108	898308	.	-	.	ID=gene961;Name=RAF_RS04820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04820;old_locus_tag=RAF_ORF0857
NC_012633.1	Protein Homology	CDS	898108	898308	.	-	0	ID=cds935;Parent=gene961;Dbxref=Genbank:WP_004997902.1;Name=WP_004997902.1;gbkey=CDS;product=30S ribosomal protein S21;protein_id=WP_004997902.1;transl_table=11
NC_012633.1	RefSeq	gene	898387	898998	.	+	.	ID=gene962;Name=RAF_RS04825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04825;old_locus_tag=RAF_ORF0858
NC_012633.1	Protein Homology	CDS	898387	898998	.	+	0	ID=cds936;Parent=gene962;Dbxref=Genbank:WP_041471914.1;Name=WP_041471914.1;gbkey=CDS;product=isoleucyl-tRNA synthetase;protein_id=WP_041471914.1;transl_table=11
NC_012633.1	RefSeq	gene	899519	899704	.	+	.	ID=gene963;Name=RAF_RS04830;end_range=899704,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS04830;partial=true;pseudo=true
NC_012633.1	Protein Homology	CDS	899519	899704	.	+	0	ID=cds937;Parent=gene963;end_range=899704,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	899627	899815	.	+	.	ID=gene964;Name=RAF_RS04835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04835
NC_012633.1	Protein Homology	CDS	899627	899815	.	+	0	ID=cds938;Parent=gene964;Dbxref=Genbank:WP_014410922.1;Name=WP_014410922.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_014410922.1;transl_table=11
NC_012633.1	RefSeq	gene	899989	903267	.	+	.	ID=gene965;Name=ileS;gbkey=Gene;gene=ileS;gene_biotype=protein_coding;locus_tag=RAF_RS04840;old_locus_tag=RAF_ORF0859
NC_012633.1	Protein Homology	CDS	899989	903267	.	+	0	ID=cds939;Parent=gene965;Dbxref=Genbank:WP_012719895.1;Name=WP_012719895.1;Note=IleRS%3B catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile)%3B since isoleucine and other amino acids such as valine are similar%2C there are additional editing function in this enzyme%3B one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile)%3B there are two active sites%2C one for aminoacylation and one for editing%3B class-I aminoacyl-tRNA synthetase family type 2 subfamily%3B some organisms carry two different copies of this enzyme%3B in some organisms%2C the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin);gbkey=CDS;gene=ileS;product=isoleucine--tRNA ligase;protein_id=WP_012719895.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	902410	902475	.	-	.	ID=id466;Note=RAF_REPEAT419_RPE-7%2C RPE-7 Full;gbkey=repeat_region;gene=ileS
NC_012633.1	RefSeq	gene	903355	903579	.	+	.	ID=gene966;Name=RAF_RS04845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04845
NC_012633.1	Protein Homology	CDS	903355	903579	.	+	0	ID=cds940;Parent=gene966;Dbxref=Genbank:WP_041471915.1;Name=WP_041471915.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471915.1;transl_table=11
NC_012633.1	RefSeq	gene	903731	904012	.	+	.	ID=gene967;Name=RAF_RS04850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04850;old_locus_tag=RAF_ORF0860
NC_012633.1	Protein Homology	CDS	903731	904012	.	+	0	ID=cds941;Parent=gene967;Dbxref=Genbank:WP_012719896.1;Name=WP_012719896.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719896.1;transl_table=11
NC_012633.1	RefSeq	gene	904178	904372	.	+	.	ID=gene968;Name=RAF_RS04855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04855
NC_012633.1	Protein Homology	CDS	904178	904372	.	+	0	ID=cds942;Parent=gene968;Dbxref=Genbank:WP_012151109.1;Name=WP_012151109.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012151109.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	904817	904868	.	+	.	ID=id467;Note=RAF_REPEAT420_RPE-4%2C RPE-4 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	905074	905301	.	+	.	ID=gene969;Name=RAF_RS04860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04860;old_locus_tag=RAF_ORF0861
NC_012633.1	Protein Homology	CDS	905074	905301	.	+	0	ID=cds943;Parent=gene969;Dbxref=Genbank:WP_012719897.1;Name=WP_012719897.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719897.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	905308	905410	.	-	.	ID=id468;Note=RAF_REPEAT421_RPE-2%2C RPE-2 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	905473	905607	.	+	.	ID=id469;Note=RAF_REPEAT422_RPE-8%2C RPE-8 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	905612	907609	.	-	.	ID=gene970;Name=RAF_RS04865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04865;old_locus_tag=RAF_ORF0862
NC_012633.1	Protein Homology	CDS	905612	907609	.	-	0	ID=cds944;Parent=gene970;Dbxref=Genbank:WP_012719898.1;Name=WP_012719898.1;gbkey=CDS;product=acetyl-CoA carboxylase;protein_id=WP_012719898.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	907627	907706	.	+	.	ID=id470;Note=RAF_REPEAT423_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	907707	909251	.	-	.	ID=gene971;Name=RAF_RS04870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04870;old_locus_tag=RAF_ORF0863
NC_012633.1	Protein Homology	CDS	907707	909251	.	-	0	ID=cds945;Parent=gene971;Dbxref=Genbank:WP_012719899.1;Name=WP_012719899.1;gbkey=CDS;product=methylmalonyl-CoA carboxyltransferase;protein_id=WP_012719899.1;transl_table=11
NC_012633.1	RefSeq	gene	909327	909575	.	+	.	ID=gene972;Name=RAF_RS04875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04875;old_locus_tag=RAF_ORF0864
NC_012633.1	Protein Homology	CDS	909327	909575	.	+	0	ID=cds946;Parent=gene972;Dbxref=Genbank:WP_012719900.1;Name=WP_012719900.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719900.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	909647	909767	.	-	.	ID=id471;Note=RAF_REPEAT424_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	909810	913232	.	+	.	ID=gene973;Name=RAF_RS04880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04880;old_locus_tag=RAF_ORF0865
NC_012633.1	Protein Homology	CDS	909810	913232	.	+	0	ID=cds947;Parent=gene973;Dbxref=Genbank:WP_012719901.1;Name=WP_012719901.1;gbkey=CDS;product=acylglycerophosphoethanolamine acyltransferase;protein_id=WP_012719901.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	913254	913320	.	+	.	ID=id472;Note=RAF_REPEAT425_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	913499	913705	.	-	.	ID=gene974;Name=RAF_RS04885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04885;old_locus_tag=RAF_ORF0866
NC_012633.1	Protein Homology	CDS	913499	913705	.	-	0	ID=cds948;Parent=gene974;Dbxref=Genbank:WP_012719902.1;Name=WP_012719902.1;gbkey=CDS;product=competence protein TfoX;protein_id=WP_012719902.1;transl_table=11
NC_012633.1	RefSeq	gene	913702	914463	.	-	.	ID=gene975;Name=RAF_RS04890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04890;old_locus_tag=RAF_ORF0867
NC_012633.1	Protein Homology	CDS	913702	914463	.	-	0	ID=cds949;Parent=gene975;Dbxref=Genbank:WP_004997884.1;Name=WP_004997884.1;gbkey=CDS;product=3-demethylubiquinone-9 3-methyltransferase;protein_id=WP_004997884.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	914499	914582	.	+	.	ID=id473;Note=RAF_REPEAT426_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	914601	915470	.	+	.	ID=gene976;Name=RAF_RS04895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04895;old_locus_tag=RAF_ORF0868
NC_012633.1	Protein Homology	CDS	914601	915470	.	+	0	ID=cds950;Parent=gene976;Dbxref=Genbank:WP_012719903.1;Name=WP_012719903.1;gbkey=CDS;product=3-demethylubiquinone-9 3-methyltransferase;protein_id=WP_012719903.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	914748	914891	.	+	.	ID=id474;Note=RAF_REPEAT427_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	915527	915620	.	+	.	ID=id475;Note=RAF_REPEAT428_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	915636	915736	.	+	.	ID=id476;Note=RAF_REPEAT429_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	915769	917310	.	+	.	ID=gene977;Name=RAF_RS04900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04900;old_locus_tag=RAF_ORF0869
NC_012633.1	Protein Homology	CDS	915769	917310	.	+	0	ID=cds951;Parent=gene977;Dbxref=Genbank:WP_012719904.1;Name=WP_012719904.1;gbkey=CDS;product=glutamyl-tRNA synthetase;protein_id=WP_012719904.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	916774	916917	.	+	.	ID=id477;Note=RAF_REPEAT430_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	917307	917843	.	+	.	ID=gene978;Name=RAF_RS04905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04905;old_locus_tag=RAF_ORF0870
NC_012633.1	Protein Homology	CDS	917307	917843	.	+	0	ID=cds952;Parent=gene978;Dbxref=Genbank:WP_012719905.1;Name=WP_012719905.1;gbkey=CDS;product=invasion protein B;protein_id=WP_012719905.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	917937	918023	.	+	.	ID=id478;Note=RAF_REPEAT431_RPE-8%2C RPE-8 Part;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	918159	918292	.	-	.	ID=id479;Note=RAF_REPEAT432_RPE-8%2C RPE-8 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	918594	918687	.	+	.	ID=id480;Note=RAF_REPEAT433_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	918765	918794	.	+	.	ID=id481;Note=RAF_REPEAT434_RPE-1%2C RPE-1 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	918802	920445	.	-	.	ID=gene979;Name=groEL;gbkey=Gene;gene=groEL;gene_biotype=protein_coding;locus_tag=RAF_RS04910;old_locus_tag=RAF_ORF0871
NC_012633.1	Protein Homology	CDS	918802	920445	.	-	0	ID=cds953;Parent=gene979;Dbxref=Genbank:WP_012719906.1;Name=WP_012719906.1;Note=60 kDa chaperone family%3B promotes refolding of misfolded polypeptides especially under stressful conditions%3B forms two stacked rings of heptamers to form a barrel-shaped 14mer%3B ends can be capped by GroES%3B misfolded proteins enter the barrel where they are refolded when GroES binds%3B many bacteria have multiple copies of the groEL gene which are active under different environmental conditions%3B the B.japonicum protein in this cluster is expressed constitutively%3B in Rhodobacter%2C Corynebacterium and Rhizobium this protein is essential for growth;gbkey=CDS;gene=groEL;product=molecular chaperone GroeL;protein_id=WP_012719906.1;transl_table=11
NC_012633.1	RefSeq	gene	920473	920760	.	-	.	ID=gene980;Name=RAF_RS04915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04915;old_locus_tag=RAF_ORF0872
NC_012633.1	Protein Homology	CDS	920473	920760	.	-	0	ID=cds954;Parent=gene980;Dbxref=Genbank:WP_041471916.1;Name=WP_041471916.1;gbkey=CDS;product=molecular chaperone GroES;protein_id=WP_041471916.1;transl_table=11
NC_012633.1	RefSeq	gene	920982	921278	.	-	.	ID=gene981;Name=RAF_RS04920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04920
NC_012633.1	Protein Homology	CDS	920982	921278	.	-	0	ID=cds955;Parent=gene981;Dbxref=Genbank:WP_016728292.1;Name=WP_016728292.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_016728292.1;transl_table=11
NC_012633.1	RefSeq	gene	921727	922059	.	-	.	ID=gene982;Name=RAF_RS04925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04925
NC_012633.1	Protein Homology	CDS	921727	922059	.	-	0	ID=cds956;Parent=gene982;Dbxref=Genbank:WP_041472034.1;Name=WP_041472034.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041472034.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	922054	922151	.	+	.	ID=id482;Note=RAF_REPEAT435_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	922133	922780	.	-	.	ID=gene983;Name=RAF_RS04930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04930
NC_012633.1	Protein Homology	CDS	922133	922780	.	-	0	ID=cds957;Parent=gene983;Dbxref=Genbank:WP_041471917.1;Name=WP_041471917.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471917.1;transl_table=11
NC_012633.1	RefSeq	gene	922814	923296	.	-	.	ID=gene984;Name=RAF_RS04935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04935;old_locus_tag=RAF_ORF0876
NC_012633.1	Protein Homology	CDS	922814	923296	.	-	0	ID=cds958;Parent=gene984;Dbxref=Genbank:WP_012719908.1;Name=WP_012719908.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719908.1;transl_table=11
NC_012633.1	RefSeq	gene	923573	923843	.	+	.	ID=gene985;Name=RAF_RS04940;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS04940;pseudo=true
NC_012633.1	Protein Homology	CDS	923573	923843	.	+	0	ID=cds959;Parent=gene985;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	923998	924717	.	-	.	ID=gene986;Name=RAF_RS04945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04945;old_locus_tag=RAF_ORF0877
NC_012633.1	Protein Homology	CDS	923998	924717	.	-	0	ID=cds960;Parent=gene986;Dbxref=Genbank:WP_010977568.1;Name=WP_010977568.1;gbkey=CDS;product=ribonuclease PH;protein_id=WP_010977568.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	924750	924872	.	+	.	ID=id483;Note=RAF_REPEAT436_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	924941	925477	.	+	.	ID=gene987;Name=RAF_RS04950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04950;old_locus_tag=RAF_ORF0878
NC_012633.1	Protein Homology	CDS	924941	925477	.	+	0	ID=cds961;Parent=gene987;Dbxref=Genbank:WP_010977570.1;Name=WP_010977570.1;Note=with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins%3B may act as a thermosensor;gbkey=CDS;product=protein GrpE;protein_id=WP_010977570.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	925477	925601	.	-	.	ID=id484;Note=RAF_REPEAT437_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	925621	926676	.	+	.	ID=gene988;Name=RAF_RS04955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04955;old_locus_tag=RAF_ORF0879
NC_012633.1	Protein Homology	CDS	925621	926676	.	+	0	ID=cds962;Parent=gene988;Dbxref=Genbank:WP_041471918.1;Name=WP_041471918.1;gbkey=CDS;product=membrane protein;protein_id=WP_041471918.1;transl_table=11
NC_012633.1	RefSeq	gene	926692	927360	.	+	.	ID=gene989;Name=RAF_RS04960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04960;old_locus_tag=RAF_ORF0880
NC_012633.1	Protein Homology	CDS	926692	927360	.	+	0	ID=cds963;Parent=gene989;Dbxref=Genbank:WP_010977572.1;Name=WP_010977572.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010977572.1;transl_table=11
NC_012633.1	RefSeq	gene	927668	927910	.	+	.	ID=gene990;Name=RAF_RS04965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04965;old_locus_tag=RAF_ORF0881
NC_012633.1	Protein Homology	CDS	927668	927910	.	+	0	ID=cds964;Parent=gene990;Dbxref=Genbank:WP_012719910.1;Name=WP_012719910.1;gbkey=CDS;product=proline/betaine transporter;protein_id=WP_012719910.1;transl_table=11
NC_012633.1	RefSeq	gene	928066	928260	.	+	.	ID=gene991;Name=RAF_RS04970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04970
NC_012633.1	Protein Homology	CDS	928066	928260	.	+	0	ID=cds965;Parent=gene991;Dbxref=Genbank:WP_041471919.1;Name=WP_041471919.1;gbkey=CDS;product=MFS sugar transporter;protein_id=WP_041471919.1;transl_table=11
NC_012633.1	RefSeq	gene	928441	928614	.	+	.	ID=gene992;Name=RAF_RS04975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04975
NC_012633.1	Protein Homology	CDS	928441	928614	.	+	0	ID=cds966;Parent=gene992;Dbxref=Genbank:WP_032849909.1;Name=WP_032849909.1;gbkey=CDS;product=proline/betaine transporter;protein_id=WP_032849909.1;transl_table=11
NC_012633.1	RefSeq	gene	928659	928892	.	-	.	ID=gene993;Name=RAF_RS04980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04980;old_locus_tag=RAF_ORF0882
NC_012633.1	Protein Homology	CDS	928659	928892	.	-	0	ID=cds967;Parent=gene993;Dbxref=Genbank:WP_012719911.1;Name=WP_012719911.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719911.1;transl_table=11
NC_012633.1	RefSeq	gene	928991	929260	.	+	.	ID=gene994;Name=RAF_RS04985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04985
NC_012633.1	Protein Homology	CDS	928991	929260	.	+	0	ID=cds968;Parent=gene994;Dbxref=Genbank:WP_041471920.1;Name=WP_041471920.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471920.1;transl_table=11
NC_012633.1	RefSeq	gene	929422	929625	.	+	.	ID=gene995;Name=RAF_RS04990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04990
NC_012633.1	Protein Homology	CDS	929422	929625	.	+	0	ID=cds969;Parent=gene995;Dbxref=Genbank:WP_041471921.1;Name=WP_041471921.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471921.1;transl_table=11
NC_012633.1	RefSeq	gene	929755	930114	.	+	.	ID=gene996;Name=RAF_RS04995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS04995
NC_012633.1	Protein Homology	CDS	929755	930114	.	+	0	ID=cds970;Parent=gene996;Dbxref=Genbank:WP_041471922.1;Name=WP_041471922.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471922.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	930087	930167	.	+	.	ID=id485;Note=RAF_REPEAT438_RPE-7%2C RPE-7 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	930324	930399	.	-	.	ID=gene997;Name=RAF_RS05000;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS05000;old_locus_tag=RAF_RNA27
NC_012633.1	tRNAscan-SE	tRNA	930324	930399	.	-	.	ID=rna26;Parent=gene997;anticodon=(pos:complement(930364..930366));gbkey=tRNA;product=tRNA-Val
NC_012633.1	tRNAscan-SE	exon	930324	930399	.	-	.	ID=id486;Parent=rna26;anticodon=(pos:complement(930364..930366));gbkey=tRNA;product=tRNA-Val
NC_012633.1	RefSeq	gene	930496	930774	.	-	.	ID=gene998;Name=RAF_RS05005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05005;old_locus_tag=RAF_ORF0886
NC_012633.1	Protein Homology	CDS	930496	930774	.	-	0	ID=cds971;Parent=gene998;Dbxref=Genbank:WP_004997845.1;Name=WP_004997845.1;gbkey=CDS;product=30S ribosomal protein S20;protein_id=WP_004997845.1;transl_table=11
NC_012633.1	RefSeq	gene	930793	931203	.	-	.	ID=gene999;Name=RAF_RS05010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05010;old_locus_tag=RAF_ORF0887
NC_012633.1	Protein Homology	CDS	930793	931203	.	-	0	ID=cds972;Parent=gene999;Dbxref=Genbank:WP_012719912.1;Name=WP_012719912.1;gbkey=CDS;product=50S ribosomal protein L17;protein_id=WP_012719912.1;transl_table=11
NC_012633.1	RefSeq	gene	931214	932236	.	-	.	ID=gene1000;Name=RAF_RS05015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05015;old_locus_tag=RAF_ORF0888
NC_012633.1	Protein Homology	CDS	931214	932236	.	-	0	ID=cds973;Parent=gene1000;Dbxref=Genbank:WP_012719913.1;Name=WP_012719913.1;Note=catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme;gbkey=CDS;product=DNA-directed RNA polymerase subunit alpha;protein_id=WP_012719913.1;transl_table=11
NC_012633.1	RefSeq	gene	932255	932638	.	-	.	ID=gene1001;Name=RAF_RS05020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05020;old_locus_tag=RAF_ORF0889
NC_012633.1	Protein Homology	CDS	932255	932638	.	-	0	ID=cds974;Parent=gene1001;Dbxref=Genbank:WP_004997839.1;Name=WP_004997839.1;gbkey=CDS;product=30S ribosomal protein S11;protein_id=WP_004997839.1;transl_table=11
NC_012633.1	RefSeq	gene	932663	933040	.	-	.	ID=gene1002;Name=RAF_RS05025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05025;old_locus_tag=RAF_ORF0890
NC_012633.1	Protein Homology	CDS	932663	933040	.	-	0	ID=cds975;Parent=gene1002;Dbxref=Genbank:WP_004997837.1;Name=WP_004997837.1;gbkey=CDS;product=30S ribosomal protein S13;protein_id=WP_004997837.1;transl_table=11
NC_012633.1	RefSeq	gene	933099	933737	.	-	.	ID=gene1003;Name=RAF_RS05030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05030;old_locus_tag=RAF_ORF0891
NC_012633.1	Protein Homology	CDS	933099	933737	.	-	0	ID=cds976;Parent=gene1003;Dbxref=Genbank:WP_012719914.1;Name=WP_012719914.1;gbkey=CDS;product=adenylate kinase;protein_id=WP_012719914.1;transl_table=11
NC_012633.1	RefSeq	gene	933753	935054	.	-	.	ID=gene1004;Name=RAF_RS05035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05035;old_locus_tag=RAF_ORF0892
NC_012633.1	Protein Homology	CDS	933753	935054	.	-	0	ID=cds977;Parent=gene1004;Dbxref=Genbank:WP_012719915.1;Name=WP_012719915.1;gbkey=CDS;product=protein translocase subunit SecY;protein_id=WP_012719915.1;transl_table=11
NC_012633.1	RefSeq	gene	935058	935519	.	-	.	ID=gene1005;Name=RAF_RS05040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05040;old_locus_tag=RAF_ORF0893
NC_012633.1	Protein Homology	CDS	935058	935519	.	-	0	ID=cds978;Parent=gene1005;Dbxref=Genbank:WP_004997829.1;Name=WP_004997829.1;gbkey=CDS;product=50S ribosomal protein L15;protein_id=WP_004997829.1;transl_table=11
NC_012633.1	RefSeq	gene	935533	935724	.	-	.	ID=gene1006;Name=RAF_RS05045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05045;old_locus_tag=RAF_ORF0894
NC_012633.1	Protein Homology	CDS	935533	935724	.	-	0	ID=cds979;Parent=gene1006;Dbxref=Genbank:WP_004997827.1;Name=WP_004997827.1;gbkey=CDS;product=50S ribosomal protein L30;protein_id=WP_004997827.1;transl_table=11
NC_012633.1	RefSeq	gene	935748	936278	.	-	.	ID=gene1007;Name=RAF_RS05050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05050;old_locus_tag=RAF_ORF0895
NC_012633.1	Protein Homology	CDS	935748	936278	.	-	0	ID=cds980;Parent=gene1007;Dbxref=Genbank:WP_004997826.1;Name=WP_004997826.1;gbkey=CDS;product=30S ribosomal protein S5;protein_id=WP_004997826.1;transl_table=11
NC_012633.1	RefSeq	gene	936296	936652	.	-	.	ID=gene1008;Name=RAF_RS05055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05055;old_locus_tag=RAF_ORF0896
NC_012633.1	Protein Homology	CDS	936296	936652	.	-	0	ID=cds981;Parent=gene1008;Dbxref=Genbank:WP_004997824.1;Name=WP_004997824.1;gbkey=CDS;product=50S ribosomal protein L18;protein_id=WP_004997824.1;transl_table=11
NC_012633.1	RefSeq	gene	936668	937201	.	-	.	ID=gene1009;Name=RAF_RS05060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05060;old_locus_tag=RAF_ORF0897
NC_012633.1	Protein Homology	CDS	936668	937201	.	-	0	ID=cds982;Parent=gene1009;Dbxref=Genbank:WP_012719916.1;Name=WP_012719916.1;gbkey=CDS;product=50S ribosomal protein L6;protein_id=WP_012719916.1;transl_table=11
NC_012633.1	RefSeq	gene	937210	937608	.	-	.	ID=gene1010;Name=RAF_RS05065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05065;old_locus_tag=RAF_ORF0898
NC_012633.1	Protein Homology	CDS	937210	937608	.	-	0	ID=cds983;Parent=gene1010;Dbxref=Genbank:WP_010977581.1;Name=WP_010977581.1;gbkey=CDS;product=30S ribosomal protein S8;protein_id=WP_010977581.1;transl_table=11
NC_012633.1	RefSeq	gene	937628	937933	.	-	.	ID=gene1011;Name=RAF_RS05070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05070;old_locus_tag=RAF_ORF0899
NC_012633.1	Protein Homology	CDS	937628	937933	.	-	0	ID=cds984;Parent=gene1011;Dbxref=Genbank:WP_008580947.1;Name=WP_008580947.1;gbkey=CDS;product=30S ribosomal protein S14;protein_id=WP_008580947.1;transl_table=11
NC_012633.1	RefSeq	gene	937951	938490	.	-	.	ID=gene1012;Name=RAF_RS05075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05075;old_locus_tag=RAF_ORF0900
NC_012633.1	Protein Homology	CDS	937951	938490	.	-	0	ID=cds985;Parent=gene1012;Dbxref=Genbank:WP_010977582.1;Name=WP_010977582.1;gbkey=CDS;product=50S ribosomal protein L5;protein_id=WP_010977582.1;transl_table=11
NC_012633.1	RefSeq	gene	938490	938819	.	-	.	ID=gene1013;Name=RAF_RS05080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05080;old_locus_tag=RAF_ORF0901
NC_012633.1	Protein Homology	CDS	938490	938819	.	-	0	ID=cds986;Parent=gene1013;Dbxref=Genbank:WP_004997814.1;Name=WP_004997814.1;gbkey=CDS;product=50S ribosomal protein L24;protein_id=WP_004997814.1;transl_table=11
NC_012633.1	RefSeq	gene	938820	939188	.	-	.	ID=gene1014;Name=RAF_RS05085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05085;old_locus_tag=RAF_ORF0902
NC_012633.1	Protein Homology	CDS	938820	939188	.	-	0	ID=cds987;Parent=gene1014;Dbxref=Genbank:WP_004997813.1;Name=WP_004997813.1;gbkey=CDS;product=50S ribosomal protein L14;protein_id=WP_004997813.1;transl_table=11
NC_012633.1	RefSeq	gene	939263	939496	.	-	.	ID=gene1015;Name=RAF_RS05090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05090;old_locus_tag=RAF_ORF0903
NC_012633.1	Protein Homology	CDS	939263	939496	.	-	0	ID=cds988;Parent=gene1015;Dbxref=Genbank:WP_008580954.1;Name=WP_008580954.1;gbkey=CDS;product=30S ribosomal protein S17;protein_id=WP_008580954.1;transl_table=11
NC_012633.1	RefSeq	gene	939498	939713	.	-	.	ID=gene1016;Name=RAF_RS05095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05095;old_locus_tag=RAF_ORF0904
NC_012633.1	Protein Homology	CDS	939498	939713	.	-	0	ID=cds989;Parent=gene1016;Dbxref=Genbank:WP_004997809.1;Name=WP_004997809.1;gbkey=CDS;product=50S ribosomal protein L29;protein_id=WP_004997809.1;transl_table=11
NC_012633.1	RefSeq	gene	939706	940116	.	-	.	ID=gene1017;Name=RAF_RS05100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05100;old_locus_tag=RAF_ORF0905
NC_012633.1	Protein Homology	CDS	939706	940116	.	-	0	ID=cds990;Parent=gene1017;Dbxref=Genbank:WP_012719918.1;Name=WP_012719918.1;gbkey=CDS;product=50S ribosomal protein L16;protein_id=WP_012719918.1;transl_table=11
NC_012633.1	RefSeq	gene	940131	940784	.	-	.	ID=gene1018;Name=RAF_RS05105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05105;old_locus_tag=RAF_ORF0906
NC_012633.1	Protein Homology	CDS	940131	940784	.	-	0	ID=cds991;Parent=gene1018;Dbxref=Genbank:WP_010977584.1;Name=WP_010977584.1;gbkey=CDS;product=30S ribosomal protein S3;protein_id=WP_010977584.1;transl_table=11
NC_012633.1	RefSeq	gene	940786	941145	.	-	.	ID=gene1019;Name=RAF_RS05110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05110;old_locus_tag=RAF_ORF0907
NC_012633.1	Protein Homology	CDS	940786	941145	.	-	0	ID=cds992;Parent=gene1019;Dbxref=Genbank:WP_004997796.1;Name=WP_004997796.1;gbkey=CDS;product=50S ribosomal protein L22;protein_id=WP_004997796.1;transl_table=11
NC_012633.1	RefSeq	gene	941154	941432	.	-	.	ID=gene1020;Name=RAF_RS05115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05115;old_locus_tag=RAF_ORF0908
NC_012633.1	Protein Homology	CDS	941154	941432	.	-	0	ID=cds993;Parent=gene1020;Dbxref=Genbank:WP_004997794.1;Name=WP_004997794.1;gbkey=CDS;product=30S ribosomal protein S19;protein_id=WP_004997794.1;transl_table=11
NC_012633.1	RefSeq	gene	941457	942278	.	-	.	ID=gene1021;Name=rplB;gbkey=Gene;gene=rplB;gene_biotype=protein_coding;locus_tag=RAF_RS05120;old_locus_tag=RAF_ORF0909
NC_012633.1	Protein Homology	CDS	941457	942278	.	-	0	ID=cds994;Parent=gene1021;Dbxref=Genbank:WP_004997791.1;Name=WP_004997791.1;Note=one of the primary rRNA-binding proteins%3B required for association of the 30S and 50S subunits to form the 70S ribosome%2C for tRNA binding and peptide bond formation;gbkey=CDS;gene=rplB;product=50S ribosomal protein L2;protein_id=WP_004997791.1;transl_table=11
NC_012633.1	RefSeq	gene	942279	942575	.	-	.	ID=gene1022;Name=RAF_RS05125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05125;old_locus_tag=RAF_ORF0910
NC_012633.1	Protein Homology	CDS	942279	942575	.	-	0	ID=cds995;Parent=gene1022;Dbxref=Genbank:WP_010977586.1;Name=WP_010977586.1;gbkey=CDS;product=50S ribosomal protein L23;protein_id=WP_010977586.1;transl_table=11
NC_012633.1	RefSeq	gene	942572	943195	.	-	.	ID=gene1023;Name=RAF_RS05130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05130;old_locus_tag=RAF_ORF0911
NC_012633.1	Protein Homology	CDS	942572	943195	.	-	0	ID=cds996;Parent=gene1023;Dbxref=Genbank:WP_012719919.1;Name=WP_012719919.1;gbkey=CDS;product=50S ribosomal protein L4;protein_id=WP_012719919.1;transl_table=11
NC_012633.1	RefSeq	gene	943306	943953	.	-	.	ID=gene1024;Name=RAF_RS05135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05135;old_locus_tag=RAF_ORF0912
NC_012633.1	Protein Homology	CDS	943306	943953	.	-	0	ID=cds997;Parent=gene1024;Dbxref=Genbank:WP_012719920.1;Name=WP_012719920.1;gbkey=CDS;product=50S ribosomal protein L3;protein_id=WP_012719920.1;transl_table=11
NC_012633.1	RefSeq	gene	943954	944271	.	-	.	ID=gene1025;Name=RAF_RS05140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05140;old_locus_tag=RAF_ORF0913
NC_012633.1	Protein Homology	CDS	943954	944271	.	-	0	ID=cds998;Parent=gene1025;Dbxref=Genbank:WP_004997781.1;Name=WP_004997781.1;gbkey=CDS;product=30S ribosomal protein S10;protein_id=WP_004997781.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	944311	944453	.	-	.	ID=id487;Note=RAF_REPEAT439_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	944513	945697	.	-	.	ID=gene1026;Name=tuf;gbkey=Gene;gene=tuf;gene_biotype=protein_coding;locus_tag=RAF_RS05145;old_locus_tag=RAF_ORF0914
NC_012633.1	Protein Homology	CDS	944513	945697	.	-	0	ID=cds999;Parent=gene1026;Dbxref=Genbank:WP_004997779.1;Name=WP_004997779.1;Note=EF-Tu%3B promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis%3B when the tRNA anticodon matches the mRNA codon%2C GTP hydrolysis results%3B the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts%3B many prokaryotes have two copies of the gene encoding EF-Tu;gbkey=CDS;gene=tuf;product=elongation factor Tu;protein_id=WP_004997779.1;transl_table=11
NC_012633.1	RefSeq	gene	945789	945862	.	-	.	ID=gene1027;Name=RAF_RS05150;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS05150;old_locus_tag=RAF_RNA28
NC_012633.1	tRNAscan-SE	tRNA	945789	945862	.	-	.	ID=rna27;Parent=gene1027;anticodon=(pos:complement(945828..945830));gbkey=tRNA;product=tRNA-Gly
NC_012633.1	tRNAscan-SE	exon	945789	945862	.	-	.	ID=id488;Parent=rna27;anticodon=(pos:complement(945828..945830));gbkey=tRNA;product=tRNA-Gly
NC_012633.1	RefSeq	gene	945998	946083	.	-	.	ID=gene1028;Name=RAF_RS05155;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS05155;old_locus_tag=RAF_RNA29
NC_012633.1	tRNAscan-SE	tRNA	945998	946083	.	-	.	ID=rna28;Parent=gene1028;anticodon=(pos:complement(946047..946049));gbkey=tRNA;product=tRNA-Tyr
NC_012633.1	tRNAscan-SE	exon	945998	946083	.	-	.	ID=id489;Parent=rna28;anticodon=(pos:complement(946047..946049));gbkey=tRNA;product=tRNA-Tyr
NC_012633.1	RefSeq	gene	946274	946996	.	+	.	ID=gene1029;Name=RAF_RS05160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05160;old_locus_tag=RAF_ORF0915
NC_012633.1	Protein Homology	CDS	946274	946996	.	+	0	ID=cds1000;Parent=gene1029;Dbxref=Genbank:WP_012719921.1;Name=WP_012719921.1;gbkey=CDS;product=RNA methyltransferase;protein_id=WP_012719921.1;transl_table=11
NC_012633.1	RefSeq	gene	947096	947548	.	+	.	ID=gene1030;Name=RAF_RS05165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05165;old_locus_tag=RAF_ORF0916
NC_012633.1	Protein Homology	CDS	947096	947548	.	+	0	ID=cds1001;Parent=gene1030;Dbxref=Genbank:WP_012719922.1;Name=WP_012719922.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719922.1;transl_table=11
NC_012633.1	RefSeq	gene	947545	948936	.	+	.	ID=gene1031;Name=RAF_RS05170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05170;old_locus_tag=RAF_ORF0917
NC_012633.1	Protein Homology	CDS	947545	948936	.	+	0	ID=cds1002;Parent=gene1031;Dbxref=Genbank:WP_010977593.1;Name=WP_010977593.1;gbkey=CDS;product=fumarate hydratase class II;protein_id=WP_010977593.1;transl_table=11
NC_012633.1	RefSeq	gene	949033	949281	.	+	.	ID=gene1032;Name=RAF_RS05175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05175;old_locus_tag=RAF_ORF0918
NC_012633.1	Protein Homology	CDS	949033	949281	.	+	0	ID=cds1003;Parent=gene1032;Dbxref=Genbank:WP_012719923.1;Name=WP_012719923.1;gbkey=CDS;product=prevent-host-death family protein;protein_id=WP_012719923.1;transl_table=11
NC_012633.1	RefSeq	gene	949275	949598	.	+	.	ID=gene1033;Name=RAF_RS05180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05180;old_locus_tag=RAF_ORF0919
NC_012633.1	Protein Homology	CDS	949275	949598	.	+	0	ID=cds1004;Parent=gene1033;Dbxref=Genbank:WP_012719924.1;Name=WP_012719924.1;gbkey=CDS;product=toxin;protein_id=WP_012719924.1;transl_table=11
NC_012633.1	RefSeq	gene	949779	951137	.	+	.	ID=gene1034;Name=RAF_RS05185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05185;old_locus_tag=RAF_ORF0920
NC_012633.1	Protein Homology	CDS	949779	951137	.	+	0	ID=cds1005;Parent=gene1034;Dbxref=Genbank:WP_010977596.1;Name=WP_010977596.1;gbkey=CDS;product=cell division protein FtsZ;protein_id=WP_010977596.1;transl_table=11
NC_012633.1	RefSeq	gene	951411	951659	.	+	.	ID=gene1035;Name=RAF_RS07090;end_range=951659,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS07090;partial=true;pseudo=true
NC_012633.1	Protein Homology	CDS	951411	951659	.	+	0	ID=cds1006;Parent=gene1035;end_range=951659,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	951639	952061	.	+	.	ID=gene1036;Name=RAF_RS05190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05190
NC_012633.1	Protein Homology	CDS	951639	952061	.	+	0	ID=cds1007;Parent=gene1036;Dbxref=Genbank:WP_041472035.1;Name=WP_041472035.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041472035.1;transl_table=11
NC_012633.1	RefSeq	gene	952245	952451	.	+	.	ID=gene1037;Name=RAF_RS05195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05195
NC_012633.1	Protein Homology	CDS	952245	952451	.	+	0	ID=cds1008;Parent=gene1037;Dbxref=Genbank:WP_041472036.1;Name=WP_041472036.1;gbkey=CDS;product=ecotin;protein_id=WP_041472036.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	952562	952641	.	+	.	ID=id490;Note=RAF_REPEAT440_RPE-7%2C RPE-7 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	952669	953241	.	-	.	ID=gene1038;Name=RAF_RS05200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05200;old_locus_tag=RAF_ORF0923
NC_012633.1	Protein Homology	CDS	952669	953241	.	-	0	ID=cds1009;Parent=gene1038;Dbxref=Genbank:WP_004997765.1;Name=WP_004997765.1;gbkey=CDS;product=iron transporter;protein_id=WP_004997765.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	953341	953374	.	+	.	ID=id491;Note=RAF_REPEAT441_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	953384	953447	.	-	.	ID=id492;Note=RAF_REPEAT442_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	953518	953542	.	+	.	ID=id493;Note=RAF_REPEAT443_RR-2%2C RR-2 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	953589	954653	.	-	.	ID=gene1039;Name=RAF_RS05205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05205;old_locus_tag=RAF_ORF0924
NC_012633.1	Protein Homology	CDS	953589	954653	.	-	0	ID=cds1010;Parent=gene1039;Dbxref=Genbank:WP_012719927.1;Name=WP_012719927.1;gbkey=CDS;product=transporter;protein_id=WP_012719927.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	954913	954988	.	+	.	ID=id494;Note=RAF_REPEAT444_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	955009	956241	.	-	.	ID=gene1040;Name=RAF_RS05210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05210;old_locus_tag=RAF_ORF0925
NC_012633.1	Protein Homology	CDS	955009	956241	.	-	0	ID=cds1011;Parent=gene1040;Dbxref=Genbank:WP_012719928.1;Name=WP_012719928.1;gbkey=CDS;product=DEAD/DEAH box helicase;protein_id=WP_012719928.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	956289	956426	.	-	.	ID=id495;Note=RAF_REPEAT445_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	956755	956967	.	-	.	ID=gene1041;Name=RAF_RS05215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05215;old_locus_tag=RAF_ORF0926
NC_012633.1	Protein Homology	CDS	956755	956967	.	-	0	ID=cds1012;Parent=gene1041;Dbxref=Genbank:WP_004997759.1;Name=WP_004997759.1;gbkey=CDS;product=cold-shock protein CspA;protein_id=WP_004997759.1;transl_table=11
NC_012633.1	RefSeq	gene	957358	957443	.	+	.	ID=gene1042;Name=RAF_RS05220;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS05220;old_locus_tag=RAF_RNA30
NC_012633.1	tRNAscan-SE	tRNA	957358	957443	.	+	.	ID=rna29;Parent=gene1042;anticodon=(pos:957391..957393);gbkey=tRNA;product=tRNA-Leu
NC_012633.1	tRNAscan-SE	exon	957358	957443	.	+	.	ID=id496;Parent=rna29;anticodon=(pos:957391..957393);gbkey=tRNA;product=tRNA-Leu
NC_012633.1	RefSeq	gene	958368	959273	.	-	.	ID=gene1043;Name=RAF_RS05225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05225;old_locus_tag=RAF_ORF0928
NC_012633.1	Protein Homology	CDS	958368	959273	.	-	0	ID=cds1013;Parent=gene1043;Dbxref=Genbank:WP_012719930.1;Name=WP_012719930.1;gbkey=CDS;product=ribosomal RNA small subunit methyltransferase A;protein_id=WP_012719930.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	958848	958945	.	-	.	ID=id497;Note=RAF_REPEAT446_RPE-2%2C RPE-2 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	959279	959413	.	-	.	ID=id498;Note=RAF_REPEAT447_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	959427	960314	.	-	.	ID=gene1044;Name=RAF_RS05230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05230;old_locus_tag=RAF_ORF0929
NC_012633.1	Protein Homology	CDS	959427	960314	.	-	0	ID=cds1014;Parent=gene1044;Dbxref=Genbank:WP_012719931.1;Name=WP_012719931.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719931.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	960343	960467	.	+	.	ID=id499;Note=RAF_REPEAT448_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	960470	962613	.	-	.	ID=gene1045;Name=RAF_RS05235;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS05235;old_locus_tag=RAF_ORF0930;pseudo=true
NC_012633.1	Protein Homology	CDS	960470	962613	.	-	0	ID=cds1015;Parent=gene1045;exception=annotated by transcript or proteomic data;gbkey=CDS;product=diguanylate cyclase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	962579	962788	.	+	.	ID=gene1046;Name=RAF_RS05240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05240
NC_012633.1	Protein Homology	CDS	962579	962788	.	+	0	ID=cds1016;Parent=gene1046;Dbxref=Genbank:WP_014273704.1;Name=WP_014273704.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_014273704.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	962763	962832	.	+	.	ID=id500;Note=RAF_REPEAT449_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	962877	964211	.	+	.	ID=gene1047;Name=RAF_RS05245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05245;old_locus_tag=RAF_ORF0932
NC_012633.1	Protein Homology	CDS	962877	964211	.	+	0	ID=cds1017;Parent=gene1047;Dbxref=Genbank:WP_012719934.1;Name=WP_012719934.1;gbkey=CDS;product=exodeoxyribonuclease 7 large subunit;protein_id=WP_012719934.1;transl_table=11
NC_012633.1	RefSeq	gene	964247	964534	.	+	.	ID=gene1048;Name=RAF_RS05250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05250;old_locus_tag=RAF_ORF0933
NC_012633.1	Protein Homology	CDS	964247	964534	.	+	0	ID=cds1018;Parent=gene1048;Dbxref=Genbank:WP_041471923.1;Name=WP_041471923.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471923.1;transl_table=11
NC_012633.1	RefSeq	gene	964686	964891	.	+	.	ID=gene1049;Name=RAF_RS05255;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS05255;pseudo=true
NC_012633.1	Protein Homology	CDS	964686	964891	.	+	0	ID=cds1019;Parent=gene1049;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	964888	965670	.	+	.	ID=gene1050;Name=RAF_RS05260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05260;old_locus_tag=RAF_ORF0934
NC_012633.1	Protein Homology	CDS	964888	965670	.	+	0	ID=cds1020;Parent=gene1050;Dbxref=Genbank:WP_012719936.1;Name=WP_012719936.1;gbkey=CDS;product=exodeoxyribonuclease III;protein_id=WP_012719936.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	965704	965841	.	+	.	ID=id501;Note=RAF_REPEAT450_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	965949	966119	.	-	.	ID=gene1051;Name=RAF_RS05265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05265
NC_012633.1	Protein Homology	CDS	965949	966119	.	-	0	ID=cds1021;Parent=gene1051;Dbxref=Genbank:WP_032073503.1;Name=WP_032073503.1;gbkey=CDS;product=GTP-binding protein;protein_id=WP_032073503.1;transl_table=11
NC_012633.1	RefSeq	gene	966136	967479	.	+	.	ID=gene1052;Name=RAF_RS05270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05270;old_locus_tag=RAF_ORF0936
NC_012633.1	Protein Homology	CDS	966136	967479	.	+	0	ID=cds1022;Parent=gene1052;Dbxref=Genbank:WP_012719937.1;Name=WP_012719937.1;gbkey=CDS;product=GTPase Der;protein_id=WP_012719937.1;transl_table=11
NC_012633.1	RefSeq	gene	967630	968772	.	-	.	ID=gene1053;Name=RAF_RS05275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05275;old_locus_tag=RAF_ORF0937
NC_012633.1	Protein Homology	CDS	967630	968772	.	-	0	ID=cds1023;Parent=gene1053;Dbxref=Genbank:WP_012719938.1;Name=WP_012719938.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719938.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	968840	968970	.	-	.	ID=id502;Note=RAF_REPEAT451_RPE-8%2C RPE-8 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	969703	970002	.	-	.	ID=gene1054;Name=RAF_RS05280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05280
NC_012633.1	Protein Homology	CDS	969703	970002	.	-	0	ID=cds1024;Parent=gene1054;Dbxref=Genbank:WP_041471924.1;Name=WP_041471924.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471924.1;transl_table=11
NC_012633.1	RefSeq	gene	970227	970704	.	-	.	ID=gene1055;Name=RAF_RS05285;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS05285;pseudo=true
NC_012633.1	Protein Homology	CDS	970227	970704	.	-	0	ID=cds1025;Parent=gene1055;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	970799	971017	.	-	.	ID=gene1056;Name=RAF_RS05290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05290
NC_012633.1	Protein Homology	CDS	970799	971017	.	-	0	ID=cds1026;Parent=gene1056;Dbxref=Genbank:WP_041471925.1;Name=WP_041471925.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471925.1;transl_table=11
NC_012633.1	RefSeq	gene	971203	971424	.	-	.	ID=gene1057;Name=RAF_RS05295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05295
NC_012633.1	Protein Homology	CDS	971203	971424	.	-	0	ID=cds1027;Parent=gene1057;Dbxref=Genbank:WP_014410965.1;Name=WP_014410965.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_014410965.1;transl_table=11
NC_012633.1	RefSeq	gene	971421	972857	.	-	.	ID=gene1058;Name=RAF_RS05300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05300;old_locus_tag=RAF_ORF0940
NC_012633.1	Protein Homology	CDS	971421	972857	.	-	0	ID=cds1028;Parent=gene1058;Dbxref=Genbank:WP_012719939.1;Name=WP_012719939.1;gbkey=CDS;product=2-polyprenylphenol 6-hydroxylase;protein_id=WP_012719939.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	972462	972525	.	+	.	ID=id503;Note=RAF_REPEAT452_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	972891	973015	.	+	.	ID=id504;Note=RAF_REPEAT453_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	973005	973751	.	-	.	ID=gene1059;Name=ubiE;gbkey=Gene;gene=ubiE;gene_biotype=protein_coding;locus_tag=RAF_RS05305;old_locus_tag=RAF_ORF0941
NC_012633.1	Protein Homology	CDS	973005	973751	.	-	0	ID=cds1029;Parent=gene1059;Dbxref=Genbank:WP_004997739.1;Name=WP_004997739.1;Note=Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone and menaquinone;gbkey=CDS;gene=ubiE;product=ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE;protein_id=WP_004997739.1;transl_table=11
NC_012633.1	RefSeq	gene	973780	974601	.	+	.	ID=gene1060;Name=RAF_RS05310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05310;old_locus_tag=RAF_ORF0942
NC_012633.1	Protein Homology	CDS	973780	974601	.	+	0	ID=cds1030;Parent=gene1060;Dbxref=Genbank:WP_012719940.1;Name=WP_012719940.1;gbkey=CDS;product=formamidopyrimidine-DNA glycosylase;protein_id=WP_012719940.1;transl_table=11
NC_012633.1	RefSeq	gene	974676	974933	.	+	.	ID=gene1061;Name=RAF_RS07095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07095
NC_012633.1	Protein Homology	CDS	974676	974933	.	+	0	ID=cds1031;Parent=gene1061;Dbxref=Genbank:WP_049752711.1;Name=WP_049752711.1;gbkey=CDS;product=mannose-1-phosphate guanyltransferase;protein_id=WP_049752711.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	974684	974814	.	+	.	ID=id505;Note=RAF_REPEAT454_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	974821	974879	.	+	.	ID=id506;Note=RAF_REPEAT455_RPE-3%2C RPE-3 Part;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	974913	974950	.	+	.	ID=id507;Note=RAF_REPEAT456_RPE-1%2C RPE-1 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	974967	975368	.	+	.	ID=gene1062;Name=RAF_RS07100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07100
NC_012633.1	Protein Homology	CDS	974967	975368	.	+	0	ID=cds1032;Parent=gene1062;Dbxref=Genbank:WP_049752712.1;Name=WP_049752712.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_049752712.1;transl_table=11
NC_012633.1	RefSeq	gene	975341	975869	.	+	.	ID=gene1063;Name=RAF_RS05320;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS05320;pseudo=true
NC_012633.1	Protein Homology	CDS	975341	975869	.	+	0	ID=cds1033;Parent=gene1063;exception=annotated by transcript or proteomic data;gbkey=CDS;product=mannose-1-phosphate guanyltransferase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	975927	976160	.	+	.	ID=gene1064;Name=RAF_RS05325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05325;old_locus_tag=RAF_ORF0946
NC_012633.1	Protein Homology	CDS	975927	976160	.	+	0	ID=cds1034;Parent=gene1064;Dbxref=Genbank:WP_041472037.1;Name=WP_041472037.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041472037.1;transl_table=11
NC_012633.1	RefSeq	gene	976554	976802	.	+	.	ID=gene1065;Name=RAF_RS05330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05330;old_locus_tag=RAF_ORF0947
NC_012633.1	Protein Homology	CDS	976554	976802	.	+	0	ID=cds1035;Parent=gene1065;Dbxref=Genbank:WP_041471926.1;Name=WP_041471926.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471926.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	976919	977015	.	+	.	ID=id508;Note=RAF_REPEAT457_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	977102	978274	.	-	.	ID=gene1066;Name=RAF_RS05335;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS05335;pseudo=true
NC_012633.1	Protein Homology	CDS	977102	978274	.	-	0	ID=cds1036;Parent=gene1066;exception=annotated by transcript or proteomic data;gbkey=CDS;product=esterase;pseudo=true;transl_except=(pos:complement(978212..978214)%2Caa:Other),(pos:complement(978164..978166)%2Caa:Other),(pos:complement(977339..977341)%2Caa:Other);transl_table=11
NC_012633.1	RefSeq	gene	979418	980338	.	-	.	ID=gene1067;Name=RAF_RS05340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05340;old_locus_tag=RAF_ORF0950
NC_012633.1	Protein Homology	CDS	979418	980338	.	-	0	ID=cds1037;Parent=gene1067;Dbxref=Genbank:WP_012719943.1;Name=WP_012719943.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_012719943.1;transl_table=11
NC_012633.1	RefSeq	gene	980391	981917	.	-	.	ID=gene1068;Name=RAF_RS05345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05345;old_locus_tag=RAF_ORF0951
NC_012633.1	Protein Homology	CDS	980391	981917	.	-	0	ID=cds1038;Parent=gene1068;Dbxref=Genbank:WP_012719944.1;Name=WP_012719944.1;Note=methionine--tRNA ligase%3B MetRS%3B adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate%3B some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not%3B four subfamilies exist based on sequence motifs and zinc content;gbkey=CDS;product=methionyl-tRNA synthetase;protein_id=WP_012719944.1;transl_table=11
NC_012633.1	RefSeq	gene	981914	982525	.	-	.	ID=gene1069;Name=RAF_RS05350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05350;old_locus_tag=RAF_ORF0952
NC_012633.1	Protein Homology	CDS	981914	982525	.	-	0	ID=cds1039;Parent=gene1069;Dbxref=Genbank:WP_012719945.1;Name=WP_012719945.1;gbkey=CDS;product=thymidylate kinase;protein_id=WP_012719945.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	982629	982753	.	+	.	ID=id509;Note=RAF_REPEAT458_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	982784	984172	.	+	.	ID=gene1070;Name=RAF_RS05355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05355;old_locus_tag=RAF_ORF0953
NC_012633.1	Protein Homology	CDS	982784	984172	.	+	0	ID=cds1040;Parent=gene1070;Dbxref=Genbank:WP_012719946.1;Name=WP_012719946.1;gbkey=CDS;product=MFS transporter;protein_id=WP_012719946.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	983400	983492	.	+	.	ID=id510;Note=RAF_REPEAT459_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	984120	984144	.	-	.	ID=id511;Note=RAF_REPEAT460_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	984197	985045	.	-	.	ID=gene1071;Name=ubiA;gbkey=Gene;gene=ubiA;gene_biotype=protein_coding;locus_tag=RAF_RS05360;old_locus_tag=RAF_ORF0954
NC_012633.1	Protein Homology	CDS	984197	985045	.	-	0	ID=cds1041;Parent=gene1071;Dbxref=Genbank:WP_012719947.1;Name=WP_012719947.1;Note=UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones%2C hemes%2C chlorophylls%2C vitamin E%2C and shikonin;gbkey=CDS;gene=ubiA;product=4-hydroxybenzoate polyprenyltransferase;protein_id=WP_012719947.1;transl_table=11
NC_012633.1	RefSeq	gene	985129	986042	.	+	.	ID=gene1072;Name=RAF_RS05365;end_range=986042,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS05365;partial=true;pseudo=true
NC_012633.1	Protein Homology	CDS	985129	986042	.	+	0	ID=cds1042;Parent=gene1072;end_range=986042,.;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=transposase;pseudo=true;transl_except=(pos:985204..985206%2Caa:Other);transl_table=11
NC_012633.1	RefSeq	gene	986173	988611	.	+	.	ID=gene1073;Name=RAF_RS05370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05370;old_locus_tag=RAF_ORF0957
NC_012633.1	Protein Homology	CDS	986173	988611	.	+	0	ID=cds1043;Parent=gene1073;Dbxref=Genbank:WP_012719948.1;Name=WP_012719948.1;gbkey=CDS;product=valine--tRNA ligase;protein_id=WP_012719948.1;transl_table=11
NC_012633.1	RefSeq	gene	988580	989334	.	+	.	ID=gene1074;Name=RAF_RS05375;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS05375;pseudo=true
NC_012633.1	Protein Homology	CDS	988580	989334	.	+	0	ID=cds1044;Parent=gene1074;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	repeat_region	988684	988937	.	+	.	ID=id512;gbkey=repeat_region
NC_012633.1	RefSeq	gene	989424	990224	.	+	.	ID=gene1075;Name=RAF_RS05380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05380;old_locus_tag=RAF_ORF0959
NC_012633.1	Protein Homology	CDS	989424	990224	.	+	0	ID=cds1045;Parent=gene1075;Dbxref=Genbank:WP_004997690.1;Name=WP_004997690.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004997690.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	989526	989779	.	+	.	ID=id513;gbkey=repeat_region
NC_012633.1	RefSeq	gene	990317	990496	.	-	.	ID=gene1076;Name=RAF_RS05385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05385
NC_012633.1	Protein Homology	CDS	990317	990496	.	-	0	ID=cds1046;Parent=gene1076;Dbxref=Genbank:WP_041471927.1;Name=WP_041471927.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471927.1;transl_table=11
NC_012633.1	RefSeq	gene	990674	991523	.	-	.	ID=gene1077;Name=RAF_RS05390;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS05390;pseudo=true
NC_012633.1	Protein Homology	CDS	990674	991523	.	-	0	ID=cds1047;Parent=gene1077;exception=annotated by transcript or proteomic data;gbkey=CDS;product=ATPase;pseudo=true;transl_except=(pos:complement(990851..990853)%2Caa:Other);transl_table=11
NC_012633.1	RefSeq	repeat_region	991639	991663	.	+	.	ID=id514;Note=RAF_REPEAT461_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	991692	991792	.	+	.	ID=id515;Note=RAF_REPEAT462_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	991973	993259	.	+	.	ID=gene1078;Name=RAF_RS05395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05395;old_locus_tag=RAF_ORF0962
NC_012633.1	Protein Homology	CDS	991973	993259	.	+	0	ID=cds1048;Parent=gene1078;Dbxref=Genbank:WP_012719950.1;Name=WP_012719950.1;gbkey=CDS;product=DNA recombination protein RmuC;protein_id=WP_012719950.1;transl_table=11
NC_012633.1	RefSeq	gene	993404	993694	.	+	.	ID=gene1079;Name=RAF_RS05400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05400
NC_012633.1	Protein Homology	CDS	993404	993694	.	+	0	ID=cds1049;Parent=gene1079;Dbxref=Genbank:WP_041472039.1;Name=WP_041472039.1;gbkey=CDS;product=alpha-1%2C3-fucosyltransferase;protein_id=WP_041472039.1;transl_table=11
NC_012633.1	RefSeq	gene	993678	994229	.	+	.	ID=gene1080;Name=RAF_RS05405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05405
NC_012633.1	Protein Homology	CDS	993678	994229	.	+	0	ID=cds1050;Parent=gene1080;Dbxref=Genbank:WP_041471928.1;Name=WP_041471928.1;gbkey=CDS;product=alpha-1%2C3-fucosyltransferase;protein_id=WP_041471928.1;transl_table=11
NC_012633.1	RefSeq	gene	994541	994858	.	+	.	ID=gene1081;Name=RAF_RS05410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05410;old_locus_tag=RAF_ORF0965
NC_012633.1	Protein Homology	CDS	994541	994858	.	+	0	ID=cds1051;Parent=gene1081;Dbxref=Genbank:WP_012719951.1;Name=WP_012719951.1;gbkey=CDS;product=LPS biosynthesis protein;protein_id=WP_012719951.1;transl_table=11
NC_012633.1	RefSeq	gene	995017	995292	.	-	.	ID=gene1082;Name=RAF_RS05415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05415
NC_012633.1	Protein Homology	CDS	995017	995292	.	-	0	ID=cds1052;Parent=gene1082;Dbxref=Genbank:WP_041471929.1;Name=WP_041471929.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471929.1;transl_table=11
NC_012633.1	RefSeq	gene	995421	995870	.	-	.	ID=gene1083;Name=RAF_RS05420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05420
NC_012633.1	Protein Homology	CDS	995421	995870	.	-	0	ID=cds1053;Parent=gene1083;Dbxref=Genbank:WP_041471930.1;Name=WP_041471930.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471930.1;transl_table=11
NC_012633.1	RefSeq	gene	995812	996060	.	-	.	ID=gene1084;Name=RAF_RS05425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05425
NC_012633.1	Protein Homology	CDS	995812	996060	.	-	0	ID=cds1054;Parent=gene1084;Dbxref=Genbank:WP_041471931.1;Name=WP_041471931.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471931.1;transl_table=11
NC_012633.1	RefSeq	gene	996057	996629	.	-	.	ID=gene1085;Name=RAF_RS05430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05430
NC_012633.1	Protein Homology	CDS	996057	996629	.	-	0	ID=cds1055;Parent=gene1085;Dbxref=Genbank:WP_041471932.1;Name=WP_041471932.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471932.1;transl_table=11
NC_012633.1	RefSeq	gene	996685	996972	.	-	.	ID=gene1086;Name=RAF_RS05435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05435
NC_012633.1	Protein Homology	CDS	996685	996972	.	-	0	ID=cds1056;Parent=gene1086;Dbxref=Genbank:WP_049752713.1;Name=WP_049752713.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_049752713.1;transl_table=11
NC_012633.1	RefSeq	gene	998215	998532	.	+	.	ID=gene1087;Name=RAF_RS05440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05440
NC_012633.1	Protein Homology	CDS	998215	998532	.	+	0	ID=cds1057;Parent=gene1087;Dbxref=Genbank:WP_041471933.1;Name=WP_041471933.1;gbkey=CDS;product=NADH-ubiquinone oxidoreductase;protein_id=WP_041471933.1;transl_table=11
NC_012633.1	RefSeq	gene	998603	998911	.	+	.	ID=gene1088;Name=RAF_RS05445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05445;old_locus_tag=RAF_ORF0973
NC_012633.1	Protein Homology	CDS	998603	998911	.	+	0	ID=cds1058;Parent=gene1088;Dbxref=Genbank:WP_004997675.1;Name=WP_004997675.1;gbkey=CDS;product=membrane protein;protein_id=WP_004997675.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	999104	999128	.	-	.	ID=id516;Note=RAF_REPEAT463_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	999150	1000427	.	-	.	ID=gene1089;Name=RAF_RS05450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05450;old_locus_tag=RAF_ORF0974
NC_012633.1	Protein Homology	CDS	999150	1000427	.	-	0	ID=cds1059;Parent=gene1089;Dbxref=Genbank:WP_012719952.1;Name=WP_012719952.1;gbkey=CDS;product=ATP-dependent Clp protease ATP-binding subunit ClpX;protein_id=WP_012719952.1;transl_table=11
NC_012633.1	RefSeq	gene	1000465	1001016	.	-	.	ID=gene1090;Name=RAF_RS05455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05455;old_locus_tag=RAF_ORF0975
NC_012633.1	Protein Homology	CDS	1000465	1001016	.	-	0	ID=cds1060;Parent=gene1090;Dbxref=Genbank:WP_012719953.1;Name=WP_012719953.1;gbkey=CDS;product=alanine acetyltransferase;protein_id=WP_012719953.1;transl_table=11
NC_012633.1	RefSeq	gene	1001176	1001862	.	-	.	ID=gene1091;Name=RAF_RS05460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05460;old_locus_tag=RAF_ORF0976
NC_012633.1	Protein Homology	CDS	1001176	1001862	.	-	0	ID=cds1061;Parent=gene1091;Dbxref=Genbank:WP_012719954.1;Name=WP_012719954.1;gbkey=CDS;product=7-cyano-7-deazaguanine synthase;protein_id=WP_012719954.1;transl_table=11
NC_012633.1	RefSeq	gene	1001859	1002203	.	-	.	ID=gene1092;Name=RAF_RS05465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05465;old_locus_tag=RAF_ORF0977
NC_012633.1	Protein Homology	CDS	1001859	1002203	.	-	0	ID=cds1062;Parent=gene1092;Dbxref=Genbank:WP_012151206.1;Name=WP_012151206.1;gbkey=CDS;product=DNA repair protein HhH-GPD;protein_id=WP_012151206.1;transl_table=11
NC_012633.1	RefSeq	gene	1002547	1002623	.	+	.	ID=gene1093;Name=RAF_RS05470;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS05470;old_locus_tag=RAF_RNA31
NC_012633.1	tRNAscan-SE	tRNA	1002547	1002623	.	+	.	ID=rna30;Parent=gene1093;anticodon=(pos:1002581..1002583);gbkey=tRNA;product=tRNA-His
NC_012633.1	tRNAscan-SE	exon	1002547	1002623	.	+	.	ID=id517;Parent=rna30;anticodon=(pos:1002581..1002583);gbkey=tRNA;product=tRNA-His
NC_012633.1	RefSeq	repeat_region	1002655	1002747	.	-	.	ID=id518;Note=RAF_REPEAT464_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1002825	1004555	.	+	.	ID=gene1094;Name=RAF_RS05475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05475;old_locus_tag=RAF_ORF0978
NC_012633.1	Protein Homology	CDS	1002825	1004555	.	+	0	ID=cds1063;Parent=gene1094;Dbxref=Genbank:WP_012719956.1;Name=WP_012719956.1;gbkey=CDS;product=ATP-binding protein;protein_id=WP_012719956.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1004562	1004722	.	-	.	ID=id519;Note=RAF_REPEAT465_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1004858	1005106	.	+	.	ID=gene1095;Name=RAF_RS05480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05480;old_locus_tag=RAF_ORF0979
NC_012633.1	Protein Homology	CDS	1004858	1005106	.	+	0	ID=cds1064;Parent=gene1095;Dbxref=Genbank:WP_012719957.1;Name=WP_012719957.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719957.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1005132	1005268	.	-	.	ID=id520;Note=RAF_REPEAT466_RPE-8%2C RPE-8 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	1005577	1005646	.	-	.	ID=id521;Note=RAF_REPEAT467_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1005773	1006945	.	+	.	ID=gene1096;Name=RAF_RS05485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05485;old_locus_tag=RAF_ORF0980
NC_012633.1	Protein Homology	CDS	1005773	1006945	.	+	0	ID=cds1065;Parent=gene1096;Dbxref=Genbank:WP_012719958.1;Name=WP_012719958.1;gbkey=CDS;product=MFS transporter;protein_id=WP_012719958.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1006971	1007045	.	-	.	ID=id522;Note=RAF_REPEAT468_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1007127	1008377	.	+	.	ID=gene1097;Name=RAF_RS05490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05490;old_locus_tag=RAF_ORF0981
NC_012633.1	Protein Homology	CDS	1007127	1008377	.	+	0	ID=cds1066;Parent=gene1097;Dbxref=Genbank:WP_012719959.1;Name=WP_012719959.1;gbkey=CDS;product=multidrug ABC transporter substrate-binding protein;protein_id=WP_012719959.1;transl_table=11
NC_012633.1	RefSeq	gene	1008370	1009035	.	+	.	ID=gene1098;Name=RAF_RS05495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05495;old_locus_tag=RAF_ORF0982
NC_012633.1	Protein Homology	CDS	1008370	1009035	.	+	0	ID=cds1067;Parent=gene1098;Dbxref=Genbank:WP_012719960.1;Name=WP_012719960.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_012719960.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1009097	1009230	.	+	.	ID=id523;Note=RAF_REPEAT469_RPE-8%2C RPE-8 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1009254	1011155	.	+	.	ID=gene1099;Name=RAF_RS05500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05500;old_locus_tag=RAF_ORF0983
NC_012633.1	Protein Homology	CDS	1009254	1011155	.	+	0	ID=cds1068;Parent=gene1099;Dbxref=Genbank:WP_012719961.1;Name=WP_012719961.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719961.1;transl_table=11
NC_012633.1	RefSeq	gene	1011230	1012504	.	+	.	ID=gene1100;Name=RAF_RS05505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05505;old_locus_tag=RAF_ORF0984
NC_012633.1	Protein Homology	CDS	1011230	1012504	.	+	0	ID=cds1069;Parent=gene1100;Dbxref=Genbank:WP_012719962.1;Name=WP_012719962.1;gbkey=CDS;product=hemolysin;protein_id=WP_012719962.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1012570	1012648	.	+	.	ID=id524;Note=RAF_REPEAT470_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1012827	1014485	.	+	.	ID=gene1101;Name=RAF_RS05510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05510;old_locus_tag=RAF_ORF0985
NC_012633.1	Protein Homology	CDS	1012827	1014485	.	+	0	ID=cds1070;Parent=gene1101;Dbxref=Genbank:WP_014410996.1;Name=WP_014410996.1;gbkey=CDS;product=cytochrome C biogenesis protein CcmF;protein_id=WP_014410996.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1013136	1013175	.	-	.	ID=id525;Note=RAF_REPEAT471_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	1013558	1013622	.	-	.	ID=id526;Note=RAF_REPEAT472_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1014482	1014772	.	-	.	ID=gene1102;Name=RAF_RS05515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05515
NC_012633.1	Protein Homology	CDS	1014482	1014772	.	-	0	ID=cds1071;Parent=gene1102;Dbxref=Genbank:WP_041471934.1;Name=WP_041471934.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471934.1;transl_table=11
NC_012633.1	RefSeq	gene	1014963	1015316	.	-	.	ID=gene1103;Name=RAF_RS05520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05520
NC_012633.1	Protein Homology	CDS	1014963	1015316	.	-	0	ID=cds1072;Parent=gene1103;Dbxref=Genbank:WP_041471935.1;Name=WP_041471935.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471935.1;transl_table=11
NC_012633.1	RefSeq	gene	1015725	1016672	.	-	.	ID=gene1104;Name=RAF_RS05525;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS05525;pseudo=true
NC_012633.1	Protein Homology	CDS	1015725	1016672	.	-	0	ID=cds1073;Parent=gene1104;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(1016307..1016309)%2Caa:Other);transl_table=11
NC_012633.1	RefSeq	repeat_region	1016853	1016972	.	+	.	ID=id527;Note=RAF_REPEAT473_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1017088	1022052	.	-	.	ID=gene1105;Name=RAF_RS05530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05530;old_locus_tag=RAF_ORF0990
NC_012633.1	Protein Homology	CDS	1017088	1022052	.	-	0	ID=cds1074;Parent=gene1105;Dbxref=Genbank:WP_012719964.1;Name=WP_012719964.1;gbkey=CDS;product=membrane protein;protein_id=WP_012719964.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1022290	1022391	.	-	.	ID=id528;Note=RAF_REPEAT474_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	1022398	1022429	.	-	.	ID=id529;Note=RAF_REPEAT475_RPE-4%2C RPE-4 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1022444	1023049	.	-	.	ID=gene1106;Name=RAF_RS05535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05535;old_locus_tag=RAF_ORF0991
NC_012633.1	Protein Homology	CDS	1022444	1023049	.	-	0	ID=cds1075;Parent=gene1106;Dbxref=Genbank:WP_012719965.1;Name=WP_012719965.1;gbkey=CDS;product=guanosine polyphosphate pyrophosphohydrolase;protein_id=WP_012719965.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1023314	1023396	.	-	.	ID=id530;Note=RAF_REPEAT476_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1023414	1024358	.	-	.	ID=gene1107;Name=RAF_RS05540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05540;old_locus_tag=RAF_ORF0992
NC_012633.1	Protein Homology	CDS	1023414	1024358	.	-	0	ID=cds1076;Parent=gene1107;Dbxref=Genbank:WP_016830931.1;Name=WP_016830931.1;gbkey=CDS;product=ATP-dependent protease;protein_id=WP_016830931.1;transl_table=11
NC_012633.1	RefSeq	gene	1024401	1024697	.	-	.	ID=gene1108;Name=RAF_RS05545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05545;old_locus_tag=RAF_ORF0993
NC_012633.1	Protein Homology	CDS	1024401	1024697	.	-	0	ID=cds1077;Parent=gene1108;Dbxref=Genbank:WP_014273726.1;Name=WP_014273726.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_014273726.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1024735	1024863	.	+	.	ID=id531;Note=RAF_REPEAT477_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1024913	1025200	.	-	.	ID=gene1109;Name=RAF_RS05550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05550;old_locus_tag=RAF_ORF0994
NC_012633.1	Protein Homology	CDS	1024913	1025200	.	-	0	ID=cds1078;Parent=gene1109;Dbxref=Genbank:WP_004997606.1;Name=WP_004997606.1;gbkey=CDS;product=histone-like DNA-binding protein;protein_id=WP_004997606.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1025237	1025310	.	-	.	ID=id532;Note=RAF_REPEAT478_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1025348	1025815	.	-	.	ID=gene1110;Name=RAF_RS05555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05555;old_locus_tag=RAF_ORF0995
NC_012633.1	Protein Homology	CDS	1025348	1025815	.	-	0	ID=cds1079;Parent=gene1110;Dbxref=Genbank:WP_012719967.1;Name=WP_012719967.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719967.1;transl_table=11
NC_012633.1	RefSeq	gene	1026325	1026795	.	+	.	ID=gene1111;Name=RAF_RS05560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05560;old_locus_tag=RAF_ORF0996
NC_012633.1	Protein Homology	CDS	1026325	1026795	.	+	0	ID=cds1080;Parent=gene1111;Dbxref=Genbank:WP_012719968.1;Name=WP_012719968.1;gbkey=CDS;product=peroxiredoxin;protein_id=WP_012719968.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1026822	1026887	.	-	.	ID=id533;Note=RAF_REPEAT479_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1026915	1027787	.	-	.	ID=gene1112;Name=RAF_RS05565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05565;old_locus_tag=RAF_ORF0997
NC_012633.1	Protein Homology	CDS	1026915	1027787	.	-	0	ID=cds1081;Parent=gene1112;Dbxref=Genbank:WP_012719969.1;Name=WP_012719969.1;Note=Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA;gbkey=CDS;product=lauroyl acyltransferase;protein_id=WP_012719969.1;transl_table=11
NC_012633.1	RefSeq	gene	1027762	1028727	.	-	.	ID=gene1113;Name=RAF_RS05570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05570;old_locus_tag=RAF_ORF0998
NC_012633.1	Protein Homology	CDS	1027762	1028727	.	-	0	ID=cds1082;Parent=gene1113;Dbxref=Genbank:WP_012719970.1;Name=WP_012719970.1;gbkey=CDS;product=tetraacyldisaccharide 4'-kinase;protein_id=WP_012719970.1;transl_table=11
NC_012633.1	RefSeq	gene	1028731	1029585	.	-	.	ID=gene1114;Name=RAF_RS05575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05575;old_locus_tag=RAF_ORF0999
NC_012633.1	Protein Homology	CDS	1028731	1029585	.	-	0	ID=cds1083;Parent=gene1114;Dbxref=Genbank:WP_012719971.1;Name=WP_012719971.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719971.1;transl_table=11
NC_012633.1	RefSeq	gene	1029585	1030374	.	-	.	ID=gene1115;Name=RAF_RS05580;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS05580;pseudo=true
NC_012633.1	Protein Homology	CDS	1029585	1030374	.	-	0	ID=cds1084;Parent=gene1115;exception=annotated by transcript or proteomic data;gbkey=CDS;product=competence protein ComJ;pseudo=true;transl_table=11
NC_012633.1	RefSeq	repeat_region	1030432	1030456	.	-	.	ID=id534;Note=RAF_REPEAT480_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1030670	1030822	.	-	.	ID=gene1116;Name=RAF_RS07105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07105
NC_012633.1	Protein Homology	CDS	1030670	1030822	.	-	0	ID=cds1085;Parent=gene1116;Dbxref=Genbank:WP_049752731.1;Name=WP_049752731.1;gbkey=CDS;product=virulence factor;protein_id=WP_049752731.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1031025	1031049	.	-	.	ID=id535;Note=RAF_REPEAT481_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1031092	1033161	.	-	.	ID=gene1117;Name=RAF_RS05590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05590;old_locus_tag=RAF_ORF1003
NC_012633.1	Protein Homology	CDS	1031092	1033161	.	-	0	ID=cds1086;Parent=gene1117;Dbxref=Genbank:WP_012719973.1;Name=WP_012719973.1;gbkey=CDS;product=DNA ligase;protein_id=WP_012719973.1;transl_table=11
NC_012633.1	RefSeq	gene	1033448	1034533	.	-	.	ID=gene1118;Name=RAF_RS05595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05595;old_locus_tag=RAF_ORF1005
NC_012633.1	Protein Homology	CDS	1033448	1034533	.	-	0	ID=cds1087;Parent=gene1118;Dbxref=Genbank:WP_004997587.1;Name=WP_004997587.1;gbkey=CDS;product=queuine tRNA-ribosyltransferase;protein_id=WP_004997587.1;transl_table=11
NC_012633.1	RefSeq	gene	1035157	1035456	.	+	.	ID=gene1119;Name=RAF_RS05600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05600
NC_012633.1	Protein Homology	CDS	1035157	1035456	.	+	0	ID=cds1088;Parent=gene1119;Dbxref=Genbank:WP_041471936.1;Name=WP_041471936.1;gbkey=CDS;product=guanosine-3'%2C5'-bis(diphosphate) 3'-pyrophosphohydrolase;protein_id=WP_041471936.1;transl_table=11
NC_012633.1	RefSeq	gene	1036310	1036528	.	-	.	ID=gene1120;Name=RAF_RS05610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05610
NC_012633.1	Protein Homology	CDS	1036310	1036528	.	-	0	ID=cds1089;Parent=gene1120;Dbxref=Genbank:WP_014363233.1;Name=WP_014363233.1;gbkey=CDS;product=proline/betaine transporter;protein_id=WP_014363233.1;transl_table=11
NC_012633.1	RefSeq	gene	1037515	1038045	.	+	.	ID=gene1121;Name=RAF_RS05615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05615;old_locus_tag=RAF_ORF1011
NC_012633.1	Protein Homology	CDS	1037515	1038045	.	+	0	ID=cds1090;Parent=gene1121;Dbxref=Genbank:WP_041472041.1;Name=WP_041472041.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041472041.1;transl_table=11
NC_012633.1	RefSeq	gene	1038230	1038528	.	-	.	ID=gene1122;Name=RAF_RS05620;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS05620;pseudo=true
NC_012633.1	Protein Homology	CDS	1038230	1038528	.	-	0	ID=cds1091;Parent=gene1122;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1038699	1038983	.	-	.	ID=gene1123;Name=RAF_RS05625;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS05625;pseudo=true
NC_012633.1	Protein Homology	CDS	1038699	1038983	.	-	0	ID=cds1092;Parent=gene1123;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1039147	1039596	.	-	.	ID=gene1124;Name=RAF_RS05630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05630;old_locus_tag=RAF_ORF1014
NC_012633.1	Protein Homology	CDS	1039147	1039596	.	-	0	ID=cds1093;Parent=gene1124;Dbxref=Genbank:WP_012719978.1;Name=WP_012719978.1;gbkey=CDS;product=outer membrane lipid asymmetry maintenance protein MlaD;protein_id=WP_012719978.1;transl_table=11
NC_012633.1	RefSeq	gene	1039621	1039920	.	-	.	ID=gene1125;Name=RAF_RS05635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05635;old_locus_tag=RAF_ORF1015
NC_012633.1	Protein Homology	CDS	1039621	1039920	.	-	0	ID=cds1094;Parent=gene1125;Dbxref=Genbank:WP_012719979.1;Name=WP_012719979.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719979.1;transl_table=11
NC_012633.1	RefSeq	gene	1039908	1040375	.	-	.	ID=gene1126;Name=RAF_RS05640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05640;old_locus_tag=RAF_ORF1016
NC_012633.1	Protein Homology	CDS	1039908	1040375	.	-	0	ID=cds1095;Parent=gene1126;Dbxref=Genbank:WP_012719980.1;Name=WP_012719980.1;gbkey=CDS;product=ribonuclease H;protein_id=WP_012719980.1;transl_table=11
NC_012633.1	RefSeq	gene	1040375	1040851	.	-	.	ID=gene1127;Name=RAF_RS05645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05645;old_locus_tag=RAF_ORF1017
NC_012633.1	Protein Homology	CDS	1040375	1040851	.	-	0	ID=cds1096;Parent=gene1127;Dbxref=Genbank:WP_012719981.1;Name=WP_012719981.1;gbkey=CDS;product=aminotransferase;protein_id=WP_012719981.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1040904	1040973	.	-	.	ID=id536;Note=RAF_REPEAT482_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	1041009	1041046	.	+	.	ID=id537;Note=RAF_REPEAT483_RPE-5%2C RPE-5 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1041047	1041516	.	-	.	ID=gene1128;Name=ssrA;gbkey=Gene;gene=ssrA;gene_biotype=tmRNA;locus_tag=RAF_RS07110
NC_012633.1	RefSeq	tmRNA	1041047	1041516	.	-	.	ID=rna31;Parent=gene1128;Note=encodes two pieces of tmRNA molecule;gbkey=tmRNA;gene=ssrA;product=tmRNA precursor
NC_012633.1	RefSeq	exon	1041047	1041516	.	-	.	ID=id538;Parent=rna31;Note=encodes two pieces of tmRNA molecule;gbkey=tmRNA;gene=ssrA;product=tmRNA precursor
NC_012633.1	RefSeq	repeat_region	1041294	1041439	.	+	.	ID=id539;Note=RAF_REPEAT484_RPE-1%2C RPE-1 Full;gbkey=repeat_region;gene=ssrA
NC_012633.1	RefSeq	gene	1041631	1042443	.	+	.	ID=gene1129;Name=RAF_RS05650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05650;old_locus_tag=RAF_ORF1018
NC_012633.1	Protein Homology	CDS	1041631	1042443	.	+	0	ID=cds1097;Parent=gene1129;Dbxref=Genbank:WP_012719982.1;Name=WP_012719982.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719982.1;transl_table=11
NC_012633.1	RefSeq	gene	1042437	1043012	.	+	.	ID=gene1130;Name=RAF_RS05655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05655;old_locus_tag=RAF_ORF1019
NC_012633.1	Protein Homology	CDS	1042437	1043012	.	+	0	ID=cds1098;Parent=gene1130;Dbxref=Genbank:WP_010977684.1;Name=WP_010977684.1;gbkey=CDS;product=dephospho-CoA kinase;protein_id=WP_010977684.1;transl_table=11
NC_012633.1	RefSeq	gene	1043000	1043689	.	+	.	ID=gene1131;Name=RAF_RS05660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05660;old_locus_tag=RAF_ORF1020
NC_012633.1	Protein Homology	CDS	1043000	1043689	.	+	0	ID=cds1099;Parent=gene1131;Dbxref=Genbank:WP_004997573.1;Name=WP_004997573.1;gbkey=CDS;product=DNA polymerase III subunit epsilon;protein_id=WP_004997573.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1043696	1043768	.	-	.	ID=id540;Note=RAF_REPEAT485_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1043816	1044538	.	+	.	ID=gene1132;Name=RAF_RS05665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05665;old_locus_tag=RAF_ORF1021
NC_012633.1	Protein Homology	CDS	1043816	1044538	.	+	0	ID=cds1100;Parent=gene1132;Dbxref=Genbank:WP_012719983.1;Name=WP_012719983.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719983.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1044496	1044575	.	+	.	ID=id541;Note=RAF_REPEAT486_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1044594	1047062	.	+	.	ID=gene1133;Name=RAF_RS05670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05670;old_locus_tag=RAF_ORF1022
NC_012633.1	Protein Homology	CDS	1044594	1047062	.	+	0	ID=cds1101;Parent=gene1133;Dbxref=Genbank:WP_012719984.1;Name=WP_012719984.1;gbkey=CDS;product=ATPase AAA;protein_id=WP_012719984.1;transl_table=11
NC_012633.1	RefSeq	gene	1047543	1048112	.	-	.	ID=gene1134;Name=RAF_RS05675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05675;old_locus_tag=RAF_ORF1023
NC_012633.1	Protein Homology	CDS	1047543	1048112	.	-	0	ID=cds1102;Parent=gene1134;Dbxref=Genbank:WP_012719985.1;Name=WP_012719985.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719985.1;transl_table=11
NC_012633.1	RefSeq	gene	1048321	1049265	.	+	.	ID=gene1135;Name=RAF_RS05680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05680;old_locus_tag=RAF_ORF1024
NC_012633.1	Protein Homology	CDS	1048321	1049265	.	+	0	ID=cds1103;Parent=gene1135;Dbxref=Genbank:WP_012719986.1;Name=WP_012719986.1;gbkey=CDS;product=ACP S-malonyltransferase;protein_id=WP_012719986.1;transl_table=11
NC_012633.1	RefSeq	gene	1049321	1049691	.	+	.	ID=gene1136;Name=RAF_RS05685;end_range=1049691,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS05685;partial=true;pseudo=true
NC_012633.1	Protein Homology	CDS	1049321	1049691	.	+	0	ID=cds1104;Parent=gene1136;end_range=1049691,.;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1050001	1050237	.	+	.	ID=gene1137;Name=RAF_RS05695;end_range=1050237,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS05695;partial=true;pseudo=true
NC_012633.1	Protein Homology	CDS	1050001	1050237	.	+	0	ID=cds1105;Parent=gene1137;end_range=1050237,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1050151	1050465	.	+	.	ID=gene1138;Name=RAF_RS05700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05700;old_locus_tag=RAF_ORF1025
NC_012633.1	Protein Homology	CDS	1050151	1050465	.	+	0	ID=cds1106;Parent=gene1138;Dbxref=Genbank:WP_012719987.1;Name=WP_012719987.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719987.1;transl_table=11
NC_012633.1	RefSeq	gene	1050532	1050623	.	+	.	ID=gene1139;Name=RAF_RS05705;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS05705;old_locus_tag=RAF_RNA33
NC_012633.1	tRNAscan-SE	tRNA	1050532	1050623	.	+	.	ID=rna32;Parent=gene1139;anticodon=(pos:1050566..1050568);gbkey=tRNA;product=tRNA-Ser
NC_012633.1	tRNAscan-SE	exon	1050532	1050623	.	+	.	ID=id542;Parent=rna32;anticodon=(pos:1050566..1050568);gbkey=tRNA;product=tRNA-Ser
NC_012633.1	RefSeq	gene	1050998	1051363	.	-	.	ID=gene1140;Name=RAF_RS05710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05710;old_locus_tag=RAF_ORF1026
NC_012633.1	Protein Homology	CDS	1050998	1051363	.	-	0	ID=cds1107;Parent=gene1140;Dbxref=Genbank:WP_012719988.1;Name=WP_012719988.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719988.1;transl_table=11
NC_012633.1	RefSeq	gene	1051749	1051937	.	+	.	ID=gene1141;Name=RAF_RS05715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05715
NC_012633.1	Protein Homology	CDS	1051749	1051937	.	+	0	ID=cds1108;Parent=gene1141;Dbxref=Genbank:WP_004997554.1;Name=WP_004997554.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004997554.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1052234	1052259	.	-	.	ID=id543;Note=RAF_REPEAT487_RR-2%2C RR-2 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	1052260	1052362	.	+	.	ID=id544;Note=RAF_REPEAT488_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	1052362	1052386	.	+	.	ID=id545;Note=RAF_REPEAT489_RR-2%2C RR-2 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	1052386	1052517	.	-	.	ID=id546;Note=RAF_REPEAT490_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1053194	1053403	.	+	.	ID=gene1142;Name=RAF_RS05720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05720
NC_012633.1	Protein Homology	CDS	1053194	1053403	.	+	0	ID=cds1109;Parent=gene1142;Dbxref=Genbank:WP_049752714.1;Name=WP_049752714.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_049752714.1;transl_table=11
NC_012633.1	RefSeq	gene	1053412	1053628	.	+	.	ID=gene1143;Name=RAF_RS05725;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS05725;pseudo=true
NC_012633.1	Protein Homology	CDS	1053412	1053628	.	+	0	ID=cds1110;Parent=gene1143;exception=annotated by transcript or proteomic data;gbkey=CDS;product=ankyrin;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1054149	1054382	.	+	.	ID=gene1144;Name=RAF_RS05730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05730
NC_012633.1	Protein Homology	CDS	1054149	1054382	.	+	0	ID=cds1111;Parent=gene1144;Dbxref=Genbank:WP_041471937.1;Name=WP_041471937.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471937.1;transl_table=11
NC_012633.1	RefSeq	gene	1054639	1054979	.	-	.	ID=gene1145;Name=RAF_RS05735;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS05735;pseudo=true
NC_012633.1	Protein Homology	CDS	1054639	1054979	.	-	0	ID=cds1112;Parent=gene1145;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1055008	1055220	.	-	.	ID=gene1146;Name=RAF_RS05740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05740
NC_012633.1	Protein Homology	CDS	1055008	1055220	.	-	0	ID=cds1113;Parent=gene1146;Dbxref=Genbank:WP_041471938.1;Name=WP_041471938.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471938.1;transl_table=11
NC_012633.1	RefSeq	gene	1055245	1055637	.	-	.	ID=gene1147;Name=RAF_RS05745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05745
NC_012633.1	Protein Homology	CDS	1055245	1055637	.	-	0	ID=cds1114;Parent=gene1147;Dbxref=Genbank:WP_041471939.1;Name=WP_041471939.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471939.1;transl_table=11
NC_012633.1	RefSeq	gene	1056018	1056386	.	-	.	ID=gene1148;Name=RAF_RS05750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05750
NC_012633.1	Protein Homology	CDS	1056018	1056386	.	-	0	ID=cds1115;Parent=gene1148;Dbxref=Genbank:WP_041471940.1;Name=WP_041471940.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471940.1;transl_table=11
NC_012633.1	RefSeq	gene	1056393	1057124	.	-	.	ID=gene1149;Name=RAF_RS05755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05755
NC_012633.1	Protein Homology	CDS	1056393	1057124	.	-	0	ID=cds1116;Parent=gene1149;Dbxref=Genbank:WP_041471941.1;Name=WP_041471941.1;gbkey=CDS;product=DNA helicase;protein_id=WP_041471941.1;transl_table=11
NC_012633.1	RefSeq	gene	1057342	1057563	.	-	.	ID=gene1150;Name=RAF_RS05760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05760
NC_012633.1	Protein Homology	CDS	1057342	1057563	.	-	0	ID=cds1117;Parent=gene1150;Dbxref=Genbank:WP_041471942.1;Name=WP_041471942.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471942.1;transl_table=11
NC_012633.1	RefSeq	gene	1057578	1057757	.	-	.	ID=gene1151;Name=RAF_RS05765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05765
NC_012633.1	Protein Homology	CDS	1057578	1057757	.	-	0	ID=cds1118;Parent=gene1151;Dbxref=Genbank:WP_014411028.1;Name=WP_014411028.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_014411028.1;transl_table=11
NC_012633.1	RefSeq	gene	1058209	1059407	.	-	.	ID=gene1152;Name=RAF_RS05770;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS05770;old_locus_tag=RAF_ORF1033;pseudo=true
NC_012633.1	Protein Homology	CDS	1058209	1059407	.	-	0	ID=cds1119;Parent=gene1152;Note=Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase%2C catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation;exception=annotated by transcript or proteomic data;gbkey=CDS;product=acetyl-CoA acetyltransferase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1059428	1059577	.	-	.	ID=gene1153;Name=RAF_RS05775;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS05775;partial=true;pseudo=true;start_range=.,1059428
NC_012633.1	Protein Homology	CDS	1059428	1059577	.	-	0	ID=cds1120;Parent=gene1153;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=poly-beta-hydroxybutyrate polymerase;pseudo=true;start_range=.,1059428;transl_table=11
NC_012633.1	RefSeq	gene	1059605	1060286	.	-	.	ID=gene1154;Name=RAF_RS05780;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS05780;pseudo=true
NC_012633.1	Protein Homology	CDS	1059605	1060286	.	-	0	ID=cds1121;Parent=gene1154;exception=annotated by transcript or proteomic data;gbkey=CDS;product=poly-beta-hydroxybutyrate polymerase;pseudo=true;transl_table=11
NC_012633.1	RefSeq	repeat_region	1060285	1060333	.	-	.	ID=id547;Note=RAF_REPEAT491_RPE-4%2C RPE-4 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1060635	1062134	.	+	.	ID=gene1155;Name=RAF_RS05785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05785;old_locus_tag=RAF_ORF1037
NC_012633.1	Protein Homology	CDS	1060635	1062134	.	+	0	ID=cds1122;Parent=gene1155;Dbxref=Genbank:WP_012719990.1;Name=WP_012719990.1;gbkey=CDS;product=ATP/ADP translocase;protein_id=WP_012719990.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1062145	1062224	.	+	.	ID=id548;Note=RAF_REPEAT492_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1062657	1063028	.	-	.	ID=gene1156;Name=RAF_RS05790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05790;old_locus_tag=RAF_ORF1038
NC_012633.1	Protein Homology	CDS	1062657	1063028	.	-	0	ID=cds1123;Parent=gene1156;Dbxref=Genbank:WP_041471943.1;Name=WP_041471943.1;gbkey=CDS;product=nucleoside triphosphate hydrolase;protein_id=WP_041471943.1;transl_table=11
NC_012633.1	RefSeq	gene	1063098	1063211	.	-	.	ID=gene1157;Name=RAF_RS05795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05795
NC_012633.1	Protein Homology	CDS	1063098	1063211	.	-	0	ID=cds1124;Parent=gene1157;Dbxref=Genbank:WP_014411033.1;Name=WP_014411033.1;gbkey=CDS;product=nucleoside polyphosphate hydrolase;protein_id=WP_014411033.1;transl_table=11
NC_012633.1	RefSeq	gene	1063429	1063650	.	+	.	ID=gene1158;Name=RAF_RS05800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05800
NC_012633.1	Protein Homology	CDS	1063429	1063650	.	+	0	ID=cds1125;Parent=gene1158;Dbxref=Genbank:WP_041471944.1;Name=WP_041471944.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471944.1;transl_table=11
NC_012633.1	RefSeq	gene	1063703	1064602	.	-	.	ID=gene1159;Name=RAF_RS05805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05805;old_locus_tag=RAF_ORF1039
NC_012633.1	Protein Homology	CDS	1063703	1064602	.	-	0	ID=cds1126;Parent=gene1159;Dbxref=Genbank:WP_012719992.1;Name=WP_012719992.1;gbkey=CDS;product=hemolysin C;protein_id=WP_012719992.1;transl_table=11
NC_012633.1	RefSeq	gene	1064619	1065122	.	-	.	ID=gene1160;Name=RAF_RS05810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05810;old_locus_tag=RAF_ORF1040
NC_012633.1	Protein Homology	CDS	1064619	1065122	.	-	0	ID=cds1127;Parent=gene1160;Dbxref=Genbank:WP_012719993.1;Name=WP_012719993.1;gbkey=CDS;product=endoribonuclease YbeY;protein_id=WP_012719993.1;transl_table=11
NC_012633.1	RefSeq	gene	1065149	1065292	.	-	.	ID=gene1161;Name=RAF_RS05815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05815
NC_012633.1	Protein Homology	CDS	1065149	1065292	.	-	0	ID=cds1128;Parent=gene1161;Dbxref=Genbank:WP_041472044.1;Name=WP_041472044.1;gbkey=CDS;product=mRNA interferase PemK;protein_id=WP_041472044.1;transl_table=11
NC_012633.1	RefSeq	gene	1065441	1065671	.	-	.	ID=gene1162;Name=RAF_RS05820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05820;old_locus_tag=RAF_ORF1042
NC_012633.1	Protein Homology	CDS	1065441	1065671	.	-	0	ID=cds1129;Parent=gene1162;Dbxref=Genbank:WP_012719995.1;Name=WP_012719995.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012719995.1;transl_table=11
NC_012633.1	RefSeq	gene	1065804	1066694	.	-	.	ID=gene1163;Name=RAF_RS05825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05825;old_locus_tag=RAF_ORF1043
NC_012633.1	Protein Homology	CDS	1065804	1066694	.	-	0	ID=cds1130;Parent=gene1163;Dbxref=Genbank:WP_012719996.1;Name=WP_012719996.1;gbkey=CDS;product=lipoyl synthase;protein_id=WP_012719996.1;transl_table=11
NC_012633.1	RefSeq	gene	1066687	1067949	.	-	.	ID=gene1164;Name=glyA;gbkey=Gene;gene=glyA;gene_biotype=protein_coding;locus_tag=RAF_RS05830;old_locus_tag=RAF_ORF1044
NC_012633.1	Protein Homology	CDS	1066687	1067949	.	-	0	ID=cds1131;Parent=gene1164;Dbxref=Genbank:WP_010977717.1;Name=WP_010977717.1;Note=catalyzes the reaction of glycine with 5%2C10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate;gbkey=CDS;gene=glyA;product=serine hydroxymethyltransferase;protein_id=WP_010977717.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1067993	1068059	.	-	.	ID=id549;Note=RAF_REPEAT493_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1068064	1068714	.	-	.	ID=gene1165;Name=RAF_RS05835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05835;old_locus_tag=RAF_ORF1045
NC_012633.1	Protein Homology	CDS	1068064	1068714	.	-	0	ID=cds1132;Parent=gene1165;Dbxref=Genbank:WP_012719997.1;Name=WP_012719997.1;gbkey=CDS;product=hydrolase;protein_id=WP_012719997.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1068757	1068880	.	+	.	ID=id550;Note=RAF_REPEAT494_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1068870	1069193	.	-	.	ID=gene1166;Name=RAF_RS05840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05840
NC_012633.1	Protein Homology	CDS	1068870	1069193	.	-	0	ID=cds1133;Parent=gene1166;Dbxref=Genbank:WP_041472045.1;Name=WP_041472045.1;gbkey=CDS;product=glutaredoxin;protein_id=WP_041472045.1;transl_table=11
NC_012633.1	RefSeq	gene	1069243	1069875	.	+	.	ID=gene1167;Name=RAF_RS05845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05845;old_locus_tag=RAF_ORF1047
NC_012633.1	Protein Homology	CDS	1069243	1069875	.	+	0	ID=cds1134;Parent=gene1167;Dbxref=Genbank:WP_012719999.1;Name=WP_012719999.1;gbkey=CDS;product=endonuclease IV;protein_id=WP_012719999.1;transl_table=11
NC_012633.1	RefSeq	gene	1070093	1070470	.	-	.	ID=gene1168;Name=RAF_RS05850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05850
NC_012633.1	Protein Homology	CDS	1070093	1070470	.	-	0	ID=cds1135;Parent=gene1168;Dbxref=Genbank:WP_041471945.1;Name=WP_041471945.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471945.1;transl_table=11
NC_012633.1	RefSeq	gene	1070458	1070649	.	-	.	ID=gene1169;Name=RAF_RS05855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05855
NC_012633.1	Protein Homology	CDS	1070458	1070649	.	-	0	ID=cds1136;Parent=gene1169;Dbxref=Genbank:WP_041472046.1;Name=WP_041472046.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041472046.1;transl_table=11
NC_012633.1	RefSeq	gene	1070593	1070817	.	-	.	ID=gene1170;Name=RAF_RS05860;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS05860;partial=true;pseudo=true;start_range=.,1070593
NC_012633.1	Protein Homology	CDS	1070593	1070817	.	-	0	ID=cds1137;Parent=gene1170;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1070593;transl_table=11
NC_012633.1	RefSeq	gene	1070871	1071243	.	-	.	ID=gene1171;Name=RAF_RS05865;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS05865;pseudo=true
NC_012633.1	Protein Homology	CDS	1070871	1071243	.	-	0	ID=cds1138;Parent=gene1171;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(1071069..1071071)%2Caa:Other);transl_table=11
NC_012633.1	RefSeq	gene	1071481	1071657	.	+	.	ID=gene1172;Name=RAF_RS05870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05870;old_locus_tag=RAF_ORF1050
NC_012633.1	Protein Homology	CDS	1071481	1071657	.	+	0	ID=cds1139;Parent=gene1172;Dbxref=Genbank:WP_004997492.1;Name=WP_004997492.1;gbkey=CDS;product=entericidin;protein_id=WP_004997492.1;transl_table=11
NC_012633.1	RefSeq	gene	1071729	1071994	.	-	.	ID=gene1173;Name=RAF_RS05875;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS05875;pseudo=true
NC_012633.1	Protein Homology	CDS	1071729	1071994	.	-	0	ID=cds1140;Parent=gene1173;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1072055	1072363	.	-	.	ID=gene1174;Name=RAF_RS05880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05880
NC_012633.1	Protein Homology	CDS	1072055	1072363	.	-	0	ID=cds1141;Parent=gene1174;Dbxref=Genbank:WP_041471946.1;Name=WP_041471946.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471946.1;transl_table=11
NC_012633.1	RefSeq	gene	1072372	1072608	.	-	.	ID=gene1175;Name=RAF_RS05885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05885
NC_012633.1	Protein Homology	CDS	1072372	1072608	.	-	0	ID=cds1142;Parent=gene1175;Dbxref=Genbank:WP_010977728.1;Name=WP_010977728.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010977728.1;transl_table=11
NC_012633.1	RefSeq	gene	1072684	1073529	.	-	.	ID=gene1176;Name=RAF_RS05890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05890;old_locus_tag=RAF_ORF1053
NC_012633.1	Protein Homology	CDS	1072684	1073529	.	-	0	ID=cds1143;Parent=gene1176;Dbxref=Genbank:WP_012720001.1;Name=WP_012720001.1;gbkey=CDS;product=16S rRNA (cytidine(1402)-2'-O)-methyltransferase;protein_id=WP_012720001.1;transl_table=11
NC_012633.1	RefSeq	gene	1073554	1074672	.	+	.	ID=gene1177;Name=RAF_RS05895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05895;old_locus_tag=RAF_ORF1054
NC_012633.1	Protein Homology	CDS	1073554	1074672	.	+	0	ID=cds1144;Parent=gene1177;Dbxref=Genbank:WP_012720002.1;Name=WP_012720002.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012720002.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1074731	1074832	.	+	.	ID=id551;Note=RAF_REPEAT495_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1074908	1075069	.	-	.	ID=gene1178;Name=tatA;gbkey=Gene;gene=tatA;gene_biotype=protein_coding;locus_tag=RAF_RS05900;old_locus_tag=RAF_ORF1055
NC_012633.1	Protein Homology	CDS	1074908	1075069	.	-	0	ID=cds1145;Parent=gene1178;Dbxref=Genbank:WP_012720003.1;Name=WP_012720003.1;Note=TatA%3B similar to TatE that is found in some proteobacteria%3B part of system that translocates proteins with a conserved twin arginine motif across the inner membrane%3B capable of translocating folded substrates typically those with bound cofactors%3B similar to a protein import system in thylakoid membranes;gbkey=CDS;gene=tatA;product=protein translocase TatA;protein_id=WP_012720003.1;transl_table=11
NC_012633.1	RefSeq	gene	1075150	1075749	.	+	.	ID=gene1179;Name=RAF_RS05905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05905;old_locus_tag=RAF_ORF1056
NC_012633.1	Protein Homology	CDS	1075150	1075749	.	+	0	ID=cds1146;Parent=gene1179;Dbxref=Genbank:WP_012720004.1;Name=WP_012720004.1;gbkey=CDS;product=phosphatidylglycerophosphatase;protein_id=WP_012720004.1;transl_table=11
NC_012633.1	RefSeq	gene	1075838	1076155	.	+	.	ID=gene1180;Name=RAF_RS05910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05910;old_locus_tag=RAF_ORF1057
NC_012633.1	Protein Homology	CDS	1075838	1076155	.	+	0	ID=cds1147;Parent=gene1180;Dbxref=Genbank:WP_004997480.1;Name=WP_004997480.1;gbkey=CDS;product=50S ribosomal protein L21;protein_id=WP_004997480.1;transl_table=11
NC_012633.1	RefSeq	gene	1076180	1076440	.	+	.	ID=gene1181;Name=RAF_RS05915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05915;old_locus_tag=RAF_ORF1058
NC_012633.1	Protein Homology	CDS	1076180	1076440	.	+	0	ID=cds1148;Parent=gene1181;Dbxref=Genbank:WP_012720005.1;Name=WP_012720005.1;gbkey=CDS;product=50S ribosomal protein L27;protein_id=WP_012720005.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1076523	1076624	.	-	.	ID=id552;Note=RAF_REPEAT496_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1076721	1077926	.	+	.	ID=gene1182;Name=RAF_RS05920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05920;old_locus_tag=RAF_ORF1059
NC_012633.1	Protein Homology	CDS	1076721	1077926	.	+	0	ID=cds1149;Parent=gene1182;Dbxref=Genbank:WP_012720006.1;Name=WP_012720006.1;gbkey=CDS;product=aspartate kinase;protein_id=WP_012720006.1;transl_table=11
NC_012633.1	RefSeq	gene	1078213	1078707	.	+	.	ID=gene1183;Name=RAF_RS05925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05925;old_locus_tag=RAF_ORF1060
NC_012633.1	Protein Homology	CDS	1078213	1078707	.	+	0	ID=cds1150;Parent=gene1183;Dbxref=Genbank:WP_012720007.1;Name=WP_012720007.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012720007.1;transl_table=11
NC_012633.1	RefSeq	gene	1078716	1079008	.	+	.	ID=gene1184;Name=RAF_RS05930;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS05930;pseudo=true
NC_012633.1	Protein Homology	CDS	1078716	1079008	.	+	0	ID=cds1151;Parent=gene1184;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	repeat_region	1078869	1078986	.	+	.	ID=id553;Note=RAF_REPEAT497_RPE-3%2C RPE-3 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1079114	1079365	.	+	.	ID=gene1185;Name=RAF_RS05935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05935
NC_012633.1	Protein Homology	CDS	1079114	1079365	.	+	0	ID=cds1152;Parent=gene1185;Dbxref=Genbank:WP_041471947.1;Name=WP_041471947.1;gbkey=CDS;product=Zn-dependent hydrolase;protein_id=WP_041471947.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1079342	1079385	.	+	.	ID=id554;Note=RAF_REPEAT498_RPE-3%2C RPE-3 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1079465	1079626	.	+	.	ID=gene1186;Name=RAF_RS05940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05940
NC_012633.1	Protein Homology	CDS	1079465	1079626	.	+	0	ID=cds1153;Parent=gene1186;Dbxref=Genbank:WP_004997461.1;Name=WP_004997461.1;gbkey=CDS;product=Zn-dependent hydrolase;protein_id=WP_004997461.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1079662	1079707	.	-	.	ID=id555;Note=RAF_REPEAT499_RPE-4%2C RPE-4 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1079759	1080055	.	-	.	ID=gene1187;Name=RAF_RS05945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05945
NC_012633.1	Protein Homology	CDS	1079759	1080055	.	-	0	ID=cds1154;Parent=gene1187;Dbxref=Genbank:WP_041471948.1;Name=WP_041471948.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471948.1;transl_table=11
NC_012633.1	RefSeq	gene	1080055	1080315	.	-	.	ID=gene1188;Name=RAF_RS05950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05950
NC_012633.1	Protein Homology	CDS	1080055	1080315	.	-	0	ID=cds1155;Parent=gene1188;Dbxref=Genbank:WP_041471949.1;Name=WP_041471949.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471949.1;transl_table=11
NC_012633.1	RefSeq	gene	1080417	1081658	.	-	.	ID=gene1189;Name=RAF_RS05955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05955;old_locus_tag=RAF_ORF1065
NC_012633.1	Protein Homology	CDS	1080417	1081658	.	-	0	ID=cds1156;Parent=gene1189;Dbxref=Genbank:WP_012720008.1;Name=WP_012720008.1;gbkey=CDS;product=MFS transporter;protein_id=WP_012720008.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1081696	1081818	.	+	.	ID=id556;Note=RAF_REPEAT500_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1081986	1082303	.	-	.	ID=gene1190;Name=RAF_RS05960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05960;old_locus_tag=RAF_ORF1067
NC_012633.1	Protein Homology	CDS	1081986	1082303	.	-	0	ID=cds1157;Parent=gene1190;Dbxref=Genbank:WP_012720010.1;Name=WP_012720010.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012720010.1;transl_table=11
NC_012633.1	RefSeq	gene	1082306	1082653	.	-	.	ID=gene1191;Name=RAF_RS05965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05965;old_locus_tag=RAF_ORF1068
NC_012633.1	Protein Homology	CDS	1082306	1082653	.	-	0	ID=cds1158;Parent=gene1191;Dbxref=Genbank:WP_012720011.1;Name=WP_012720011.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012720011.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1082493	1082636	.	-	.	ID=id557;Note=RAF_REPEAT501_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1082660	1083013	.	-	.	ID=gene1192;Name=RAF_RS05970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05970;old_locus_tag=RAF_ORF1069
NC_012633.1	Protein Homology	CDS	1082660	1083013	.	-	0	ID=cds1159;Parent=gene1192;Dbxref=Genbank:WP_012720012.1;Name=WP_012720012.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_012720012.1;transl_table=11
NC_012633.1	RefSeq	gene	1083017	1087768	.	-	.	ID=gene1193;Name=RAF_RS05975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05975;old_locus_tag=RAF_ORF1070
NC_012633.1	Protein Homology	CDS	1083017	1087768	.	-	0	ID=cds1160;Parent=gene1193;Dbxref=Genbank:WP_012720013.1;Name=WP_012720013.1;gbkey=CDS;product=glutamate dehydrogenase;protein_id=WP_012720013.1;transl_table=11
NC_012633.1	RefSeq	gene	1087853	1089190	.	+	.	ID=gene1194;Name=RAF_RS05980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05980;old_locus_tag=RAF_ORF1071
NC_012633.1	Protein Homology	CDS	1087853	1089190	.	+	0	ID=cds1161;Parent=gene1194;Dbxref=Genbank:WP_004997443.1;Name=WP_004997443.1;gbkey=CDS;product=tRNA modification GTPase MnmE;protein_id=WP_004997443.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1089295	1089393	.	-	.	ID=id558;Note=RAF_REPEAT502_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1089576	1090877	.	+	.	ID=gene1195;Name=RAF_RS05985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05985;old_locus_tag=RAF_ORF1072
NC_012633.1	Protein Homology	CDS	1089576	1090877	.	+	0	ID=cds1162;Parent=gene1195;Dbxref=Genbank:WP_012720014.1;Name=WP_012720014.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012720014.1;transl_table=11
NC_012633.1	RefSeq	gene	1091924	1092265	.	-	.	ID=gene1196;Name=RAF_RS05990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05990
NC_012633.1	Protein Homology	CDS	1091924	1092265	.	-	0	ID=cds1163;Parent=gene1196;Dbxref=Genbank:WP_041471950.1;Name=WP_041471950.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471950.1;transl_table=11
NC_012633.1	RefSeq	gene	1092265	1092453	.	-	.	ID=gene1197;Name=RAF_RS05995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS05995
NC_012633.1	Protein Homology	CDS	1092265	1092453	.	-	0	ID=cds1164;Parent=gene1197;Dbxref=Genbank:WP_041471951.1;Name=WP_041471951.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471951.1;transl_table=11
NC_012633.1	RefSeq	gene	1092649	1093059	.	-	.	ID=gene1198;Name=RAF_RS06000;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS06000;pseudo=true
NC_012633.1	Protein Homology	CDS	1092649	1093059	.	-	0	ID=cds1165;Parent=gene1198;gbkey=CDS;product=MFS transporter;pseudo=true;transl_except=(pos:complement(1093039..1093041)%2Caa:Other);transl_table=11
NC_012633.1	RefSeq	gene	1093360	1094391	.	+	.	ID=gene1199;Name=RAF_RS06005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06005;old_locus_tag=RAF_ORF1077
NC_012633.1	Protein Homology	CDS	1093360	1094391	.	+	0	ID=cds1166;Parent=gene1199;Dbxref=Genbank:WP_004997434.1;Name=WP_004997434.1;gbkey=CDS;product=protein RecA;protein_id=WP_004997434.1;transl_table=11
NC_012633.1	RefSeq	gene	1094384	1095109	.	+	.	ID=gene1200;Name=RAF_RS06010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06010;old_locus_tag=RAF_ORF1078
NC_012633.1	Protein Homology	CDS	1094384	1095109	.	+	0	ID=cds1167;Parent=gene1200;Dbxref=Genbank:WP_012720015.1;Name=WP_012720015.1;gbkey=CDS;product=3-oxoacyl-ACP synthase;protein_id=WP_012720015.1;transl_table=11
NC_012633.1	RefSeq	gene	1095288	1095533	.	+	.	ID=gene1201;Name=RAF_RS06015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06015;old_locus_tag=RAF_ORF1079
NC_012633.1	Protein Homology	CDS	1095288	1095533	.	+	0	ID=cds1168;Parent=gene1201;Dbxref=Genbank:WP_004997429.1;Name=WP_004997429.1;gbkey=CDS;product=acyl carrier protein;protein_id=WP_004997429.1;transl_table=11
NC_012633.1	RefSeq	gene	1095566	1096852	.	+	.	ID=gene1202;Name=RAF_RS06020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06020;old_locus_tag=RAF_ORF1080
NC_012633.1	Protein Homology	CDS	1095566	1096852	.	+	0	ID=cds1169;Parent=gene1202;Dbxref=Genbank:WP_012720016.1;Name=WP_012720016.1;Note=FabF%3B beta-ketoacyl-ACP synthase II%2C KASII%3B catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP%3B required for the elongation of short-chain unsaturated acyl-ACP;gbkey=CDS;product=3-oxoacyl-ACP synthase;protein_id=WP_012720016.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1096841	1096961	.	-	.	ID=id559;Note=RAF_REPEAT503_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	1096977	1097111	.	-	.	ID=id560;Note=RAF_REPEAT504_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1097134	1098915	.	+	.	ID=gene1203;Name=RAF_RS06025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06025;old_locus_tag=RAF_ORF1081
NC_012633.1	Protein Homology	CDS	1097134	1098915	.	+	0	ID=cds1170;Parent=gene1203;Dbxref=Genbank:WP_012720017.1;Name=WP_012720017.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_012720017.1;transl_table=11
NC_012633.1	RefSeq	gene	1098992	1100062	.	+	.	ID=gene1204;Name=RAF_RS06030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06030;old_locus_tag=RAF_ORF1082
NC_012633.1	Protein Homology	CDS	1098992	1100062	.	+	0	ID=cds1171;Parent=gene1204;Dbxref=Genbank:WP_041471952.1;Name=WP_041471952.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471952.1;transl_table=11
NC_012633.1	RefSeq	gene	1100080	1100310	.	+	.	ID=gene1205;Name=RAF_RS06035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06035
NC_012633.1	Protein Homology	CDS	1100080	1100310	.	+	0	ID=cds1172;Parent=gene1205;Dbxref=Genbank:WP_014411059.1;Name=WP_014411059.1;gbkey=CDS;product=3-oxoacyl-ACP synthase;protein_id=WP_014411059.1;transl_table=11
NC_012633.1	RefSeq	gene	1100328	1101426	.	-	.	ID=gene1206;Name=RAF_RS06040;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS06040;pseudo=true
NC_012633.1	Protein Homology	CDS	1100328	1101426	.	-	0	ID=cds1173;Parent=gene1206;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1101496	1102185	.	-	.	ID=gene1207;Name=RAF_RS06045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06045;old_locus_tag=RAF_ORF1086
NC_012633.1	Protein Homology	CDS	1101496	1102185	.	-	0	ID=cds1174;Parent=gene1207;Dbxref=Genbank:WP_010977760.1;Name=WP_010977760.1;gbkey=CDS;product=guanylate kinase;protein_id=WP_010977760.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1102060	1102167	.	-	.	ID=id561;Note=RAF_REPEAT505_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	1102210	1102332	.	+	.	ID=id562;Note=RAF_REPEAT506_RPE-3%2C RPE-3 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1102326	1102562	.	-	.	ID=gene1208;Name=RAF_RS06050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06050
NC_012633.1	Protein Homology	CDS	1102326	1102562	.	-	0	ID=cds1175;Parent=gene1208;Dbxref=Genbank:WP_004997409.1;Name=WP_004997409.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_004997409.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1102649	1102785	.	-	.	ID=id563;Note=RAF_REPEAT507_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	1102791	1102841	.	+	.	ID=id564;Note=RAF_REPEAT508_RPE-4%2C RPE-4 Part;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	1102865	1102891	.	+	.	ID=id565;Note=RAF_REPEAT509_RR-1%2C RR-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1102910	1103749	.	-	.	ID=gene1209;Name=RAF_RS06055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06055;old_locus_tag=RAF_ORF1088
NC_012633.1	Protein Homology	CDS	1102910	1103749	.	-	0	ID=cds1176;Parent=gene1209;Dbxref=Genbank:WP_012720020.1;Name=WP_012720020.1;gbkey=CDS;product=rod shape-determining protein MreC;protein_id=WP_012720020.1;transl_table=11
NC_012633.1	RefSeq	gene	1103752	1104792	.	-	.	ID=gene1210;Name=RAF_RS06060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06060;old_locus_tag=RAF_ORF1089
NC_012633.1	Protein Homology	CDS	1103752	1104792	.	-	0	ID=cds1177;Parent=gene1210;Dbxref=Genbank:WP_004997403.1;Name=WP_004997403.1;Note=functions in MreBCD complex in some organisms;gbkey=CDS;product=rod shape-determining protein MreB;protein_id=WP_004997403.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1104878	1104999	.	+	.	ID=id566;Note=RAF_REPEAT510_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1105003	1106091	.	-	.	ID=gene1211;Name=RAF_RS06065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06065;old_locus_tag=RAF_ORF1090
NC_012633.1	Protein Homology	CDS	1105003	1106091	.	-	0	ID=cds1178;Parent=gene1211;Dbxref=Genbank:WP_012720021.1;Name=WP_012720021.1;gbkey=CDS;product=permease;protein_id=WP_012720021.1;transl_table=11
NC_012633.1	RefSeq	gene	1106133	1106209	.	-	.	ID=gene1212;Name=RAF_RS06070;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS06070;old_locus_tag=RAF_RNA34
NC_012633.1	tRNAscan-SE	tRNA	1106133	1106209	.	-	.	ID=rna33;Parent=gene1212;anticodon=(pos:complement(1106173..1106175));gbkey=tRNA;product=tRNA-Met
NC_012633.1	tRNAscan-SE	exon	1106133	1106209	.	-	.	ID=id567;Parent=rna33;anticodon=(pos:complement(1106173..1106175));gbkey=tRNA;product=tRNA-Met
NC_012633.1	RefSeq	repeat_region	1106314	1106387	.	-	.	ID=id568;Note=RAF_REPEAT511_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1106519	1106986	.	-	.	ID=gene1213;Name=RAF_RS06075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06075;old_locus_tag=RAF_ORF1091
NC_012633.1	Protein Homology	CDS	1106519	1106986	.	-	0	ID=cds1179;Parent=gene1213;Dbxref=Genbank:WP_012720022.1;Name=WP_012720022.1;gbkey=CDS;product=peptidoglycan-binding protein;protein_id=WP_012720022.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1107189	1107300	.	+	.	ID=id569;Note=RAF_REPEAT512_RPE-5%2C RPE-5 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1107202	1107444	.	+	.	ID=gene1214;Name=RAF_RS06080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06080;old_locus_tag=RAF_ORF1092
NC_012633.1	Protein Homology	CDS	1107202	1107444	.	+	0	ID=cds1180;Parent=gene1214;Dbxref=Genbank:WP_012720023.1;Name=WP_012720023.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012720023.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1107301	1107444	.	+	.	ID=id570;Note=RAF_REPEAT513_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1107459	1108415	.	-	.	ID=gene1215;Name=RAF_RS06085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06085;old_locus_tag=RAF_ORF1093
NC_012633.1	Protein Homology	CDS	1107459	1108415	.	-	0	ID=cds1181;Parent=gene1215;Dbxref=Genbank:WP_010977768.1;Name=WP_010977768.1;Note=FabH%3B beta-ketoacyl-acyl carrier protein synthase III%3B catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation%3B differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs;gbkey=CDS;product=3-oxoacyl-ACP synthase III;protein_id=WP_010977768.1;transl_table=11
NC_012633.1	RefSeq	gene	1108423	1108623	.	-	.	ID=gene1216;Name=RAF_RS06090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06090;old_locus_tag=RAF_ORF1094
NC_012633.1	Protein Homology	CDS	1108423	1108623	.	-	0	ID=cds1182;Parent=gene1216;Dbxref=Genbank:WP_004997395.1;Name=WP_004997395.1;gbkey=CDS;product=50S ribosomal protein L32;protein_id=WP_004997395.1;transl_table=11
NC_012633.1	RefSeq	gene	1108719	1109192	.	+	.	ID=gene1217;Name=RAF_RS06095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06095;old_locus_tag=RAF_ORF1095
NC_012633.1	Protein Homology	CDS	1108719	1109192	.	+	0	ID=cds1183;Parent=gene1217;Dbxref=Genbank:WP_010977769.1;Name=WP_010977769.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010977769.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1109263	1109338	.	+	.	ID=id571;Note=RAF_REPEAT514_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1109396	1110307	.	+	.	ID=gene1218;Name=RAF_RS06100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06100;old_locus_tag=RAF_ORF1096
NC_012633.1	Protein Homology	CDS	1109396	1110307	.	+	0	ID=cds1184;Parent=gene1218;Dbxref=Genbank:WP_012720024.1;Name=WP_012720024.1;gbkey=CDS;product=signal recognition particle-docking protein FtsY;protein_id=WP_012720024.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1110369	1110446	.	+	.	ID=id572;Note=RAF_REPEAT515_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1110473	1113100	.	+	.	ID=gene1219;Name=RAF_RS06105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06105;old_locus_tag=RAF_ORF1097
NC_012633.1	Protein Homology	CDS	1110473	1113100	.	+	0	ID=cds1185;Parent=gene1219;Dbxref=Genbank:WP_012720025.1;Name=WP_012720025.1;gbkey=CDS;product=DNA polymerase I;protein_id=WP_012720025.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1113145	1113277	.	+	.	ID=id573;Note=RAF_REPEAT516_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1113280	1113474	.	+	.	ID=gene1220;Name=RAF_RS06110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06110
NC_012633.1	Protein Homology	CDS	1113280	1113474	.	+	0	ID=cds1186;Parent=gene1220;Dbxref=Genbank:WP_041471953.1;Name=WP_041471953.1;gbkey=CDS;product=S-adenosylmethionine synthetase;protein_id=WP_041471953.1;transl_table=11
NC_012633.1	RefSeq	gene	1113581	1114411	.	+	.	ID=gene1221;Name=RAF_RS06115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06115
NC_012633.1	Protein Homology	CDS	1113581	1114411	.	+	0	ID=cds1187;Parent=gene1221;Dbxref=Genbank:WP_049752717.1;Name=WP_049752717.1;Note=catalyzes the formation of S-adenosylmethionine from methionine and ATP%3B methionine adenosyltransferase;gbkey=CDS;product=S-adenosylmethionine synthetase;protein_id=WP_049752717.1;transl_table=11
NC_012633.1	RefSeq	gene	1114479	1114757	.	+	.	ID=gene1222;Name=RAF_RS06120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06120
NC_012633.1	Protein Homology	CDS	1114479	1114757	.	+	0	ID=cds1188;Parent=gene1222;Dbxref=Genbank:WP_041471954.1;Name=WP_041471954.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471954.1;transl_table=11
NC_012633.1	RefSeq	gene	1114796	1115056	.	+	.	ID=gene1223;Name=RAF_RS06125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06125
NC_012633.1	Protein Homology	CDS	1114796	1115056	.	+	0	ID=cds1189;Parent=gene1223;Dbxref=Genbank:WP_041471955.1;Name=WP_041471955.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471955.1;transl_table=11
NC_012633.1	RefSeq	gene	1115229	1115438	.	+	.	ID=gene1224;Name=RAF_RS06130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06130
NC_012633.1	Protein Homology	CDS	1115229	1115438	.	+	0	ID=cds1190;Parent=gene1224;Dbxref=Genbank:WP_041471956.1;Name=WP_041471956.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471956.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1115536	1115611	.	-	.	ID=id574;Note=RAF_REPEAT517_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1115704	1119249	.	-	.	ID=gene1225;Name=RAF_RS06135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06135;old_locus_tag=RAF_ORF1103
NC_012633.1	Protein Homology	CDS	1115704	1119249	.	-	0	ID=cds1191;Parent=gene1225;Dbxref=Genbank:WP_012720026.1;Name=WP_012720026.1;gbkey=CDS;product=DNA polymerase III subunit alpha;protein_id=WP_012720026.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1116668	1116739	.	-	.	ID=id575;Note=RAF_REPEAT518_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	1119321	1119345	.	+	.	ID=id576;Note=RAF_REPEAT519_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1119366	1120664	.	-	.	ID=gene1226;Name=RAF_RS06140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06140;old_locus_tag=RAF_ORF1104
NC_012633.1	Protein Homology	CDS	1119366	1120664	.	-	0	ID=cds1192;Parent=gene1226;Dbxref=Genbank:WP_012720027.1;Name=WP_012720027.1;gbkey=CDS;product=UDP-glucose 6-dehydrogenase;protein_id=WP_012720027.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1120746	1120872	.	+	.	ID=id577;Note=RAF_REPEAT520_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1120913	1123423	.	+	.	ID=gene1227;Name=RAF_RS06145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06145;old_locus_tag=RAF_ORF1105
NC_012633.1	Protein Homology	CDS	1120913	1123423	.	+	0	ID=cds1193;Parent=gene1227;Dbxref=Genbank:WP_012720028.1;Name=WP_012720028.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012720028.1;transl_table=11
NC_012633.1	RefSeq	gene	1123543	1125096	.	+	.	ID=gene1228;Name=RAF_RS06150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06150;old_locus_tag=RAF_ORF1106
NC_012633.1	Protein Homology	CDS	1123543	1125096	.	+	0	ID=cds1194;Parent=gene1228;Dbxref=Genbank:WP_041471957.1;Name=WP_041471957.1;gbkey=CDS;product=transporter;protein_id=WP_041471957.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1123568	1123662	.	-	.	ID=id578;Note=RAF_REPEAT521_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	1123709	1123802	.	+	.	ID=id579;Note=RAF_REPEAT522_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1125163	1125918	.	+	.	ID=gene1229;Name=RAF_RS06155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06155;old_locus_tag=RAF_ORF1107
NC_012633.1	Protein Homology	CDS	1125163	1125918	.	+	0	ID=cds1195;Parent=gene1229;Dbxref=Genbank:WP_012720030.1;Name=WP_012720030.1;gbkey=CDS;product=preprotein translocase subunit TatC;protein_id=WP_012720030.1;transl_table=11
NC_012633.1	RefSeq	gene	1125896	1127173	.	+	.	ID=gene1230;Name=RAF_RS06160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06160;old_locus_tag=RAF_ORF1108
NC_012633.1	Protein Homology	CDS	1125896	1127173	.	+	0	ID=cds1196;Parent=gene1230;Dbxref=Genbank:WP_012720031.1;Name=WP_012720031.1;Note=catalyzes a two-step reaction%2C first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA;gbkey=CDS;product=serine--tRNA ligase;protein_id=WP_012720031.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1127245	1127269	.	-	.	ID=id580;Note=RAF_REPEAT523_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	1127362	1127487	.	+	.	ID=id581;Note=RAF_REPEAT524_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1127518	1129950	.	+	.	ID=gene1231;Name=RAF_RS06165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06165;old_locus_tag=RAF_ORF1109
NC_012633.1	Protein Homology	CDS	1127518	1129950	.	+	0	ID=cds1197;Parent=gene1231;Dbxref=Genbank:WP_012720032.1;Name=WP_012720032.1;gbkey=CDS;product=transporter;protein_id=WP_012720032.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1129960	1130037	.	-	.	ID=id582;Note=RAF_REPEAT525_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1130086	1133574	.	+	.	ID=gene1232;Name=RAF_RS06170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06170;old_locus_tag=RAF_ORF1110
NC_012633.1	Protein Homology	CDS	1130086	1133574	.	+	0	ID=cds1198;Parent=gene1232;Dbxref=Genbank:WP_012720033.1;Name=WP_012720033.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012720033.1;transl_table=11
NC_012633.1	RefSeq	gene	1133579	1134484	.	+	.	ID=gene1233;Name=RAF_RS06175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06175;old_locus_tag=RAF_ORF1111
NC_012633.1	Protein Homology	CDS	1133579	1134484	.	+	0	ID=cds1199;Parent=gene1233;Dbxref=Genbank:WP_012720034.1;Name=WP_012720034.1;gbkey=CDS;product=membrane protein;protein_id=WP_012720034.1;transl_table=11
NC_012633.1	RefSeq	gene	1134528	1135241	.	+	.	ID=gene1234;Name=RAF_RS06180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06180;old_locus_tag=RAF_ORF1112
NC_012633.1	Protein Homology	CDS	1134528	1135241	.	+	0	ID=cds1200;Parent=gene1234;Dbxref=Genbank:WP_012720035.1;Name=WP_012720035.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012720035.1;transl_table=11
NC_012633.1	RefSeq	gene	1135327	1136991	.	+	.	ID=gene1235;Name=RAF_RS06185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06185;old_locus_tag=RAF_ORF1113
NC_012633.1	Protein Homology	CDS	1135327	1136991	.	+	0	ID=cds1201;Parent=gene1235;Dbxref=Genbank:WP_012720036.1;Name=WP_012720036.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012720036.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1137004	1137058	.	-	.	ID=id583;Note=RAF_REPEAT526_RPE-4%2C RPE-4 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1137090	1137488	.	+	.	ID=gene1236;Name=RAF_RS06190;end_range=1137488,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS06190;partial=true;pseudo=true
NC_012633.1	Protein Homology	CDS	1137090	1137488	.	+	0	ID=cds1202;Parent=gene1236;end_range=1137488,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=transcriptional regulator;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1137432	1137755	.	+	.	ID=gene1237;Name=RAF_RS06195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06195
NC_012633.1	Protein Homology	CDS	1137432	1137755	.	+	0	ID=cds1203;Parent=gene1237;Dbxref=Genbank:WP_041472049.1;Name=WP_041472049.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_041472049.1;transl_table=11
NC_012633.1	RefSeq	gene	1137788	1138405	.	+	.	ID=gene1238;Name=RAF_RS06200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06200;old_locus_tag=RAF_ORF1115
NC_012633.1	Protein Homology	CDS	1137788	1138405	.	+	0	ID=cds1204;Parent=gene1238;Dbxref=Genbank:WP_012720038.1;Name=WP_012720038.1;gbkey=CDS;product=NADH:ubiquinone oxidoreductase subunit J;protein_id=WP_012720038.1;transl_table=11
NC_012633.1	RefSeq	gene	1138398	1138712	.	+	.	ID=gene1239;Name=RAF_RS06205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06205;old_locus_tag=RAF_ORF1116
NC_012633.1	Protein Homology	CDS	1138398	1138712	.	+	0	ID=cds1205;Parent=gene1239;Dbxref=Genbank:WP_041471958.1;Name=WP_041471958.1;gbkey=CDS;product=NADH-quinone oxidoreductase subunit K;protein_id=WP_041471958.1;transl_table=11
NC_012633.1	RefSeq	gene	1138712	1140685	.	+	.	ID=gene1240;Name=RAF_RS06210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06210;old_locus_tag=RAF_ORF1117
NC_012633.1	Protein Homology	CDS	1138712	1140685	.	+	0	ID=cds1206;Parent=gene1240;Dbxref=Genbank:WP_041471959.1;Name=WP_041471959.1;gbkey=CDS;product=NADH:ubiquinone oxidoreductase subunit L;protein_id=WP_041471959.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1140324	1140401	.	+	.	ID=id584;Note=RAF_REPEAT527_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	1140736	1140811	.	+	.	ID=id585;Note=RAF_REPEAT528_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1140839	1142320	.	+	.	ID=gene1241;Name=RAF_RS06215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06215;old_locus_tag=RAF_ORF1118
NC_012633.1	Protein Homology	CDS	1140839	1142320	.	+	0	ID=cds1207;Parent=gene1241;Dbxref=Genbank:WP_012720041.1;Name=WP_012720041.1;gbkey=CDS;product=NADH:ubiquinone oxidoreductase subunit M;protein_id=WP_012720041.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1142636	1142729	.	+	.	ID=id586;Note=RAF_REPEAT529_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1142734	1143309	.	+	.	ID=gene1242;Name=RAF_RS06220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06220;old_locus_tag=RAF_ORF1119
NC_012633.1	Protein Homology	CDS	1142734	1143309	.	+	0	ID=cds1208;Parent=gene1242;Dbxref=Genbank:WP_016770480.1;Name=WP_016770480.1;Note=ATP-binding protein%3B required for proper cytochrome c maturation;gbkey=CDS;product=cytochrome c biogenesis ATP-binding export protein CcmA;protein_id=WP_016770480.1;transl_table=11
NC_012633.1	RefSeq	gene	1143788	1144267	.	-	.	ID=gene1243;Name=RAF_RS06225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06225;old_locus_tag=RAF_ORF1120
NC_012633.1	Protein Homology	CDS	1143788	1144267	.	-	0	ID=cds1209;Parent=gene1243;Dbxref=Genbank:WP_012720043.1;Name=WP_012720043.1;gbkey=CDS;product=NADH-quinone oxidoreductase subunit I;protein_id=WP_012720043.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1144354	1144419	.	+	.	ID=id587;Note=RAF_REPEAT530_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1144454	1145473	.	-	.	ID=gene1244;Name=RAF_RS06230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06230;old_locus_tag=RAF_ORF1121
NC_012633.1	Protein Homology	CDS	1144454	1145473	.	-	0	ID=cds1210;Parent=gene1244;Dbxref=Genbank:WP_012720044.1;Name=WP_012720044.1;Note=Catalyzes the transfer of electrons from NADH to quinone;gbkey=CDS;product=NADH-quinone oxidoreductase subunit H;protein_id=WP_012720044.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1145489	1145568	.	+	.	ID=id588;Note=RAF_REPEAT531_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1145595	1147610	.	-	.	ID=gene1245;Name=RAF_RS06235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06235;old_locus_tag=RAF_ORF1122
NC_012633.1	Protein Homology	CDS	1145595	1147610	.	-	0	ID=cds1211;Parent=gene1245;Dbxref=Genbank:WP_012720045.1;Name=WP_012720045.1;Note=Catalyzes the transfer of electrons from NADH to quinone;gbkey=CDS;product=NADH dehydrogenase subunit G;protein_id=WP_012720045.1;transl_table=11
NC_012633.1	RefSeq	gene	1147613	1147969	.	-	.	ID=gene1246;Name=RAF_RS06240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06240;old_locus_tag=RAF_ORF1123
NC_012633.1	Protein Homology	CDS	1147613	1147969	.	-	0	ID=cds1212;Parent=gene1246;Dbxref=Genbank:WP_012720046.1;Name=WP_012720046.1;gbkey=CDS;product=NADH dehydrogenase subunit G;protein_id=WP_012720046.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1148049	1148125	.	+	.	ID=id589;Note=RAF_REPEAT532_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1148138	1150774	.	-	.	ID=gene1247;Name=RAF_RS06245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06245;old_locus_tag=RAF_ORF1124
NC_012633.1	Protein Homology	CDS	1148138	1150774	.	-	0	ID=cds1213;Parent=gene1247;Dbxref=Genbank:WP_012720047.1;Name=WP_012720047.1;Note=Catalyzes the conversion of citrate to isocitrate;gbkey=CDS;product=aconitate hydratase;protein_id=WP_012720047.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1150833	1150892	.	+	.	ID=id590;Note=RAF_REPEAT533_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1150956	1151294	.	-	.	ID=gene1248;Name=atpC;gbkey=Gene;gene=atpC;gene_biotype=protein_coding;locus_tag=RAF_RS06250;old_locus_tag=RAF_ORF1125
NC_012633.1	Protein Homology	CDS	1150956	1151294	.	-	0	ID=cds1214;Parent=gene1248;Dbxref=Genbank:WP_012720048.1;Name=WP_012720048.1;Note=part of catalytic core of ATP synthase%3B alpha(3)beta(3)gamma(1)delta(1)epsilon(1)%3B involved in producing ATP from ADP in the presence of the proton motive force across the membrane;gbkey=CDS;gene=atpC;product=ATP synthase epsilon chain;protein_id=WP_012720048.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1151322	1151346	.	+	.	ID=id591;Note=RAF_REPEAT534_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1151352	1152773	.	-	.	ID=gene1249;Name=RAF_RS06255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06255;old_locus_tag=RAF_ORF1126
NC_012633.1	Protein Homology	CDS	1151352	1152773	.	-	0	ID=cds1215;Parent=gene1249;Dbxref=Genbank:WP_012720049.1;Name=WP_012720049.1;Note=Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit;gbkey=CDS;product=ATP synthase subunit beta;protein_id=WP_012720049.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1152823	1152943	.	+	.	ID=id592;Note=RAF_REPEAT535_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1152946	1153917	.	-	.	ID=gene1250;Name=RAF_RS06260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06260;old_locus_tag=RAF_ORF1127
NC_012633.1	Protein Homology	CDS	1152946	1153917	.	-	0	ID=cds1216;Parent=gene1250;Dbxref=Genbank:WP_012720050.1;Name=WP_012720050.1;gbkey=CDS;product=ATP synthase subunit gamma;protein_id=WP_012720050.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1153192	1153295	.	-	.	ID=id593;Note=RAF_REPEAT536_RPE-2%2C RPE-2 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	1153959	1154018	.	+	.	ID=id594;Note=RAF_REPEAT537_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1154050	1155582	.	-	.	ID=gene1251;Name=RAF_RS06265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06265;old_locus_tag=RAF_ORF1128
NC_012633.1	Protein Homology	CDS	1154050	1155582	.	-	0	ID=cds1217;Parent=gene1251;Dbxref=Genbank:WP_041471960.1;Name=WP_041471960.1;Note=produces ATP from ADP in the presence of a proton gradient across the membrane%3B the alpha chain is a catalytic subunit;gbkey=CDS;product=ATP F0F1 synthase subunit alpha;protein_id=WP_041471960.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1155671	1155736	.	+	.	ID=id595;Note=RAF_REPEAT538_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1155748	1156302	.	-	.	ID=gene1252;Name=RAF_RS06270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06270;old_locus_tag=RAF_ORF1129
NC_012633.1	Protein Homology	CDS	1155748	1156302	.	-	0	ID=cds1218;Parent=gene1252;Dbxref=Genbank:WP_012720052.1;Name=WP_012720052.1;gbkey=CDS;product=ATP synthase subunit delta;protein_id=WP_012720052.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1156340	1156464	.	+	.	ID=id596;Note=RAF_REPEAT539_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1156464	1157843	.	-	.	ID=gene1253;Name=RAF_RS06275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06275;old_locus_tag=RAF_ORF1130
NC_012633.1	Protein Homology	CDS	1156464	1157843	.	-	0	ID=cds1219;Parent=gene1253;Dbxref=Genbank:WP_012720053.1;Name=WP_012720053.1;gbkey=CDS;product=dihydrolipoamide dehydrogenase;protein_id=WP_012720053.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1157881	1157953	.	-	.	ID=id597;Note=RAF_REPEAT540_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1157994	1158422	.	-	.	ID=gene1254;Name=RAF_RS06280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06280;old_locus_tag=RAF_ORF1131
NC_012633.1	Protein Homology	CDS	1157994	1158422	.	-	0	ID=cds1220;Parent=gene1254;Dbxref=Genbank:WP_012151348.1;Name=WP_012151348.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012151348.1;transl_table=11
NC_012633.1	RefSeq	gene	1158620	1158927	.	+	.	ID=gene1255;Name=RAF_RS06285;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS06285;pseudo=true
NC_012633.1	Protein Homology	CDS	1158620	1158927	.	+	0	ID=cds1221;Parent=gene1255;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1159174	1159377	.	+	.	ID=gene1256;Name=RAF_RS06290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06290
NC_012633.1	Protein Homology	CDS	1159174	1159377	.	+	0	ID=cds1222;Parent=gene1256;Dbxref=Genbank:WP_016728372.1;Name=WP_016728372.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_016728372.1;transl_table=11
NC_012633.1	RefSeq	gene	1159465	1159758	.	+	.	ID=gene1257;Name=RAF_RS06295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06295
NC_012633.1	Protein Homology	CDS	1159465	1159758	.	+	0	ID=cds1223;Parent=gene1257;Dbxref=Genbank:WP_041471961.1;Name=WP_041471961.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471961.1;transl_table=11
NC_012633.1	RefSeq	gene	1159839	1160141	.	-	.	ID=gene1258;Name=RAF_RS06300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06300
NC_012633.1	Protein Homology	CDS	1159839	1160141	.	-	0	ID=cds1224;Parent=gene1258;Dbxref=Genbank:WP_041471962.1;Name=WP_041471962.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471962.1;transl_table=11
NC_012633.1	RefSeq	gene	1160280	1160552	.	-	.	ID=gene1259;Name=RAF_RS06305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06305
NC_012633.1	Protein Homology	CDS	1160280	1160552	.	-	0	ID=cds1225;Parent=gene1259;Dbxref=Genbank:WP_041471963.1;Name=WP_041471963.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471963.1;transl_table=11
NC_012633.1	RefSeq	gene	1160714	1163086	.	-	.	ID=gene1260;Name=RAF_RS06310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06310;old_locus_tag=RAF_ORF1136
NC_012633.1	Protein Homology	CDS	1160714	1163086	.	-	0	ID=cds1226;Parent=gene1260;Dbxref=Genbank:WP_012720054.1;Name=WP_012720054.1;gbkey=CDS;product=peptidase;protein_id=WP_012720054.1;transl_table=11
NC_012633.1	RefSeq	gene	1163090	1164427	.	-	.	ID=gene1261;Name=RAF_RS06315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06315;old_locus_tag=RAF_ORF1137
NC_012633.1	Protein Homology	CDS	1163090	1164427	.	-	0	ID=cds1227;Parent=gene1261;Dbxref=Genbank:WP_012720055.1;Name=WP_012720055.1;gbkey=CDS;product=tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase;protein_id=WP_012720055.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1164463	1164588	.	+	.	ID=id598;Note=RAF_REPEAT541_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	1164683	1164774	.	-	.	ID=id599;Note=RAF_REPEAT542_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1164848	1165063	.	-	.	ID=gene1262;Name=RAF_RS06320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06320
NC_012633.1	Protein Homology	CDS	1164848	1165063	.	-	0	ID=cds1228;Parent=gene1262;Dbxref=Genbank:WP_041471964.1;Name=WP_041471964.1;gbkey=CDS;product=nucleotidyltransferase;protein_id=WP_041471964.1;transl_table=11
NC_012633.1	RefSeq	gene	1165524	1165666	.	-	.	ID=gene1263;Name=RAF_RS06325;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS06325;partial=true;pseudo=true;start_range=.,1165524
NC_012633.1	Protein Homology	CDS	1165524	1165666	.	-	0	ID=cds1229;Parent=gene1263;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=nucleotidyltransferase;pseudo=true;start_range=.,1165524;transl_table=11
NC_012633.1	RefSeq	gene	1166090	1166443	.	-	.	ID=gene1264;Name=RAF_RS06330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06330;old_locus_tag=RAF_ORF1140
NC_012633.1	Protein Homology	CDS	1166090	1166443	.	-	0	ID=cds1230;Parent=gene1264;Dbxref=Genbank:WP_012720056.1;Name=WP_012720056.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012720056.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1166606	1166749	.	+	.	ID=id600;Note=RAF_REPEAT543_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1166751	1167230	.	-	.	ID=gene1265;Name=RAF_RS06335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06335;old_locus_tag=RAF_ORF1141
NC_012633.1	Protein Homology	CDS	1166751	1167230	.	-	0	ID=cds1231;Parent=gene1265;Dbxref=Genbank:WP_004997294.1;Name=WP_004997294.1;gbkey=CDS;product=aspartyl-tRNA synthetase;protein_id=WP_004997294.1;transl_table=11
NC_012633.1	RefSeq	gene	1167223	1168950	.	-	.	ID=gene1266;Name=RAF_RS06340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06340;old_locus_tag=RAF_ORF1142
NC_012633.1	Protein Homology	CDS	1167223	1168950	.	-	0	ID=cds1232;Parent=gene1266;Dbxref=Genbank:WP_012720058.1;Name=WP_012720058.1;gbkey=CDS;product=potassium transporter;protein_id=WP_012720058.1;transl_table=11
NC_012633.1	RefSeq	gene	1168947	1169273	.	-	.	ID=gene1267;Name=RAF_RS06345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06345;old_locus_tag=RAF_ORF1143
NC_012633.1	Protein Homology	CDS	1168947	1169273	.	-	0	ID=cds1233;Parent=gene1267;Dbxref=Genbank:WP_012720059.1;Name=WP_012720059.1;gbkey=CDS;product=ribosome silencing factor RsfS;protein_id=WP_012720059.1;transl_table=11
NC_012633.1	RefSeq	gene	1169429	1169668	.	+	.	ID=gene1268;Name=RAF_RS06350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06350;old_locus_tag=RAF_ORF1144
NC_012633.1	Protein Homology	CDS	1169429	1169668	.	+	0	ID=cds1234;Parent=gene1268;Dbxref=Genbank:WP_012720060.1;Name=WP_012720060.1;gbkey=CDS;product=ATP-binding protein;protein_id=WP_012720060.1;transl_table=11
NC_012633.1	RefSeq	gene	1169814	1170431	.	-	.	ID=gene1269;Name=RAF_RS06355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06355
NC_012633.1	Protein Homology	CDS	1169814	1170431	.	-	0	ID=cds1235;Parent=gene1269;Dbxref=Genbank:WP_041471965.1;Name=WP_041471965.1;gbkey=CDS;product=cell surface protein;protein_id=WP_041471965.1;transl_table=11
NC_012633.1	RefSeq	gene	1170492	1171046	.	-	.	ID=gene1270;Name=RAF_RS06360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06360
NC_012633.1	Protein Homology	CDS	1170492	1171046	.	-	0	ID=cds1236;Parent=gene1270;Dbxref=Genbank:WP_041471966.1;Name=WP_041471966.1;gbkey=CDS;product=cell surface antigen-like protein Sca13;protein_id=WP_041471966.1;transl_table=11
NC_012633.1	RefSeq	gene	1171255	1171434	.	+	.	ID=gene1271;Name=RAF_RS06365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06365
NC_012633.1	Protein Homology	CDS	1171255	1171434	.	+	0	ID=cds1237;Parent=gene1271;Dbxref=Genbank:WP_041471967.1;Name=WP_041471967.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471967.1;transl_table=11
NC_012633.1	RefSeq	gene	1171627	1172155	.	-	.	ID=gene1272;Name=RAF_RS06370;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS06370;pseudo=true
NC_012633.1	Protein Homology	CDS	1171627	1172155	.	-	0	ID=cds1238;Parent=gene1272;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1172139	1172425	.	-	.	ID=gene1273;Name=RAF_RS06375;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS06375;pseudo=true
NC_012633.1	Protein Homology	CDS	1172139	1172425	.	-	0	ID=cds1239;Parent=gene1273;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1172547	1172900	.	-	.	ID=gene1274;Name=RAF_RS06380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06380
NC_012633.1	Protein Homology	CDS	1172547	1172900	.	-	0	ID=cds1240;Parent=gene1274;Dbxref=Genbank:WP_041472050.1;Name=WP_041472050.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041472050.1;transl_table=11
NC_012633.1	RefSeq	gene	1173021	1173305	.	-	.	ID=gene1275;Name=RAF_RS06385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06385
NC_012633.1	Protein Homology	CDS	1173021	1173305	.	-	0	ID=cds1241;Parent=gene1275;Dbxref=Genbank:WP_041471968.1;Name=WP_041471968.1;gbkey=CDS;product=membrane protein;protein_id=WP_041471968.1;transl_table=11
NC_012633.1	RefSeq	gene	1173281	1173643	.	-	.	ID=gene1276;Name=RAF_RS06390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06390
NC_012633.1	Protein Homology	CDS	1173281	1173643	.	-	0	ID=cds1242;Parent=gene1276;Dbxref=Genbank:WP_041471969.1;Name=WP_041471969.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471969.1;transl_table=11
NC_012633.1	RefSeq	gene	1173603	1174328	.	-	.	ID=gene1277;Name=RAF_RS06395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06395
NC_012633.1	Protein Homology	CDS	1173603	1174328	.	-	0	ID=cds1243;Parent=gene1277;Dbxref=Genbank:WP_041472051.1;Name=WP_041472051.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041472051.1;transl_table=11
NC_012633.1	RefSeq	gene	1174383	1174827	.	-	.	ID=gene1278;Name=RAF_RS06400;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS06400;partial=true;pseudo=true;start_range=.,1174383
NC_012633.1	Protein Homology	CDS	1174383	1174827	.	-	0	ID=cds1244;Parent=gene1278;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1174383;transl_table=11
NC_012633.1	RefSeq	gene	1175096	1175353	.	-	.	ID=gene1279;Name=RAF_RS06405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06405
NC_012633.1	GeneMarkS+	CDS	1175096	1175353	.	-	0	ID=cds1245;Parent=gene1279;Dbxref=Genbank:WP_041471970.1;Name=WP_041471970.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471970.1;transl_table=11
NC_012633.1	RefSeq	gene	1175334	1175528	.	-	.	ID=gene1280;Name=RAF_RS06410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06410
NC_012633.1	Protein Homology	CDS	1175334	1175528	.	-	0	ID=cds1246;Parent=gene1280;Dbxref=Genbank:WP_004997262.1;Name=WP_004997262.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004997262.1;transl_table=11
NC_012633.1	RefSeq	gene	1175841	1176285	.	-	.	ID=gene1281;Name=RAF_RS06415;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS06415;pseudo=true
NC_012633.1	Protein Homology	CDS	1175841	1176285	.	-	0	ID=cds1247;Parent=gene1281;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1176338	1176579	.	-	.	ID=gene1282;Name=RAF_RS06420;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS06420;pseudo=true
NC_012633.1	Protein Homology	CDS	1176338	1176579	.	-	0	ID=cds1248;Parent=gene1282;exception=annotated by transcript or proteomic data;gbkey=CDS;product=cell surface protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	repeat_region	1176992	1177069	.	+	.	ID=id601;Note=RAF_REPEAT544_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1177258	1177334	.	+	.	ID=gene1283;Name=RAF_RS06425;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS06425;old_locus_tag=RAF_RNA35
NC_012633.1	tRNAscan-SE	tRNA	1177258	1177334	.	+	.	ID=rna34;Parent=gene1283;anticodon=(pos:1177292..1177294);gbkey=tRNA;product=tRNA-Pro
NC_012633.1	tRNAscan-SE	exon	1177258	1177334	.	+	.	ID=id602;Parent=rna34;anticodon=(pos:1177292..1177294);gbkey=tRNA;product=tRNA-Pro
NC_012633.1	RefSeq	gene	1177352	1177567	.	+	.	ID=gene1284;Name=RAF_RS06430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06430;old_locus_tag=RAF_ORF1156
NC_012633.1	Protein Homology	CDS	1177352	1177567	.	+	0	ID=cds1249;Parent=gene1284;Dbxref=Genbank:WP_010977828.1;Name=WP_010977828.1;gbkey=CDS;product=translation initiation factor IF-1;protein_id=WP_010977828.1;transl_table=11
NC_012633.1	RefSeq	gene	1177579	1178226	.	+	.	ID=gene1285;Name=RAF_RS06435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06435;old_locus_tag=RAF_ORF1157
NC_012633.1	Protein Homology	CDS	1177579	1178226	.	+	0	ID=cds1250;Parent=gene1285;Dbxref=Genbank:WP_012720062.1;Name=WP_012720062.1;Note=Maf%3B overexpression in Bacillus subtilis inhibits septation in the dividing cell;gbkey=CDS;product=septum formation inhibitor Maf;protein_id=WP_012720062.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1178209	1178310	.	+	.	ID=id603;Note=RAF_REPEAT545_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1178360	1178791	.	-	.	ID=gene1286;Name=RAF_RS06440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06440;old_locus_tag=RAF_ORF1158
NC_012633.1	Protein Homology	CDS	1178360	1178791	.	-	0	ID=cds1251;Parent=gene1286;Dbxref=Genbank:WP_012720063.1;Name=WP_012720063.1;gbkey=CDS;product=molecular chaperone DnaK;protein_id=WP_012720063.1;transl_table=11
NC_012633.1	RefSeq	gene	1178959	1179876	.	-	.	ID=gene1287;Name=RAF_RS06445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06445;old_locus_tag=RAF_ORF1159
NC_012633.1	Protein Homology	CDS	1178959	1179876	.	-	0	ID=cds1252;Parent=gene1287;Dbxref=Genbank:WP_012720064.1;Name=WP_012720064.1;gbkey=CDS;product=tyrosine recombinase XerC;protein_id=WP_012720064.1;transl_table=11
NC_012633.1	RefSeq	gene	1180046	1180327	.	+	.	ID=gene1288;Name=RAF_RS06450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06450;old_locus_tag=RAF_ORF1160
NC_012633.1	Protein Homology	CDS	1180046	1180327	.	+	0	ID=cds1253;Parent=gene1288;Dbxref=Genbank:WP_012720065.1;Name=WP_012720065.1;gbkey=CDS;product=phasin;protein_id=WP_012720065.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1180303	1180359	.	+	.	ID=id604;Note=RAF_REPEAT546_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1180375	1180977	.	-	.	ID=gene1289;Name=RAF_RS06455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06455;old_locus_tag=RAF_ORF1161
NC_012633.1	Protein Homology	CDS	1180375	1180977	.	-	0	ID=cds1254;Parent=gene1289;Dbxref=Genbank:WP_012720066.1;Name=WP_012720066.1;gbkey=CDS;product=phospholipase D;protein_id=WP_012720066.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1181019	1181077	.	-	.	ID=id605;Note=RAF_REPEAT547_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1181127	1181273	.	-	.	ID=gene1290;Name=RAF_RS06460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06460
NC_012633.1	Protein Homology	CDS	1181127	1181273	.	-	0	ID=cds1255;Parent=gene1290;Dbxref=Genbank:WP_041472052.1;Name=WP_041472052.1;gbkey=CDS;product=poly(3-hydroxyalkanoate) synthetase;protein_id=WP_041472052.1;transl_table=11
NC_012633.1	RefSeq	gene	1181506	1181634	.	-	.	ID=gene1291;Name=RAF_RS06465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06465
NC_012633.1	Protein Homology	CDS	1181506	1181634	.	-	0	ID=cds1256;Parent=gene1291;Dbxref=Genbank:WP_014363313.1;Name=WP_014363313.1;gbkey=CDS;product=poly(3-hydroxyalkanoate) polymerase;protein_id=WP_014363313.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1181694	1181751	.	+	.	ID=id606;Note=RAF_REPEAT548_RPE-5%2C RPE-5 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1181755	1183233	.	-	.	ID=gene1292;Name=RAF_RS06470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06470;old_locus_tag=RAF_ORF1164
NC_012633.1	Protein Homology	CDS	1181755	1183233	.	-	0	ID=cds1257;Parent=gene1292;Dbxref=Genbank:WP_012720067.1;Name=WP_012720067.1;gbkey=CDS;product=3-polyprenyl-4-hydroxybenzoate decarboxylase;protein_id=WP_012720067.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1183295	1183360	.	+	.	ID=id607;Note=RAF_REPEAT549_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1183387	1184961	.	-	.	ID=gene1293;Name=RAF_RS06475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06475;old_locus_tag=RAF_ORF1165
NC_012633.1	Protein Homology	CDS	1183387	1184961	.	-	0	ID=cds1258;Parent=gene1293;Dbxref=Genbank:WP_012720068.1;Name=WP_012720068.1;gbkey=CDS;product=peptidylprolyl isomerase;protein_id=WP_012720068.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1184985	1185050	.	-	.	ID=id608;Note=RAF_REPEAT550_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1185155	1191436	.	-	.	ID=gene1294;Name=RAF_RS06480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06480;old_locus_tag=RAF_ORF1166
NC_012633.1	Protein Homology	CDS	1185155	1191436	.	-	0	ID=cds1259;Parent=gene1294;Dbxref=Genbank:WP_012720069.1;Name=WP_012720069.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012720069.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1188365	1190803	.	+	.	ID=id609;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1191498	1191677	.	+	.	ID=gene1295;Name=RAF_RS06485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06485
NC_012633.1	Protein Homology	CDS	1191498	1191677	.	+	0	ID=cds1260;Parent=gene1295;Dbxref=Genbank:WP_041471971.1;Name=WP_041471971.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471971.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1191963	1192021	.	+	.	ID=id610;Note=RAF_REPEAT551_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1192074	1194308	.	-	.	ID=gene1296;Name=RAF_RS06490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06490;old_locus_tag=RAF_ORF1167
NC_012633.1	Protein Homology	CDS	1192074	1194308	.	-	0	ID=cds1261;Parent=gene1296;Dbxref=Genbank:WP_012720070.1;Name=WP_012720070.1;gbkey=CDS;product=cell division protein FtsK;protein_id=WP_012720070.1;transl_table=11
NC_012633.1	RefSeq	gene	1194477	1195346	.	-	.	ID=gene1297;Name=RAF_RS06495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06495;old_locus_tag=RAF_ORF1168
NC_012633.1	Protein Homology	CDS	1194477	1195346	.	-	0	ID=cds1262;Parent=gene1297;Dbxref=Genbank:WP_012720071.1;Name=WP_012720071.1;gbkey=CDS;product=acyltransferase;protein_id=WP_012720071.1;transl_table=11
NC_012633.1	RefSeq	gene	1195502	1196281	.	+	.	ID=gene1298;Name=RAF_RS06500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06500;old_locus_tag=RAF_ORF1169
NC_012633.1	Protein Homology	CDS	1195502	1196281	.	+	0	ID=cds1263;Parent=gene1298;Dbxref=Genbank:WP_010977838.1;Name=WP_010977838.1;gbkey=CDS;product=methionine aminopeptidase;protein_id=WP_010977838.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1196367	1196447	.	-	.	ID=id611;Note=RAF_REPEAT552_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	1196454	1196488	.	-	.	ID=id612;Note=RAF_REPEAT553_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1196531	1196842	.	+	.	ID=gene1299;Name=RAF_RS06505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06505
NC_012633.1	Protein Homology	CDS	1196531	1196842	.	+	0	ID=cds1264;Parent=gene1299;Dbxref=Genbank:WP_014411118.1;Name=WP_014411118.1;gbkey=CDS;product=DNA repair protein;protein_id=WP_014411118.1;transl_table=11
NC_012633.1	RefSeq	gene	1196847	1197215	.	+	.	ID=gene1300;Name=RAF_RS06510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06510
NC_012633.1	Protein Homology	CDS	1196847	1197215	.	+	0	ID=cds1265;Parent=gene1300;Dbxref=Genbank:WP_041471972.1;Name=WP_041471972.1;gbkey=CDS;product=DNA repair protein RadC;protein_id=WP_041471972.1;transl_table=11
NC_012633.1	RefSeq	gene	1197202	1198185	.	+	.	ID=gene1301;Name=RAF_RS06515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06515;old_locus_tag=RAF_ORF1172
NC_012633.1	Protein Homology	CDS	1197202	1198185	.	+	0	ID=cds1266;Parent=gene1301;Dbxref=Genbank:WP_012720072.1;Name=WP_012720072.1;gbkey=CDS;product=UDP-phosphate alpha-N-acetylglucosaminyltransferase;protein_id=WP_012720072.1;transl_table=11
NC_012633.1	RefSeq	gene	1198182	1198505	.	+	.	ID=gene1302;Name=RAF_RS06520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06520;old_locus_tag=RAF_ORF1173
NC_012633.1	Protein Homology	CDS	1198182	1198505	.	+	0	ID=cds1267;Parent=gene1302;Dbxref=Genbank:WP_004997222.1;Name=WP_004997222.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004997222.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1198589	1198613	.	+	.	ID=id613;Note=RAF_REPEAT554_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	1198651	1198743	.	+	.	ID=id614;Note=RAF_REPEAT555_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1198893	1199630	.	-	.	ID=gene1303;Name=RAF_RS06525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06525;old_locus_tag=RAF_ORF1174
NC_012633.1	Protein Homology	CDS	1198893	1199630	.	-	0	ID=cds1268;Parent=gene1303;Dbxref=Genbank:WP_012720073.1;Name=WP_012720073.1;gbkey=CDS;product=adhesin;protein_id=WP_012720073.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1199757	1199838	.	+	.	ID=id615;Note=RAF_REPEAT556_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1199877	1200551	.	-	.	ID=gene1304;Name=RAF_RS06530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06530;old_locus_tag=RAF_ORF1175
NC_012633.1	Protein Homology	CDS	1199877	1200551	.	-	0	ID=cds1269;Parent=gene1304;Dbxref=Genbank:WP_041471973.1;Name=WP_041471973.1;gbkey=CDS;product=adhesin;protein_id=WP_041471973.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1200704	1200837	.	-	.	ID=id616;Note=RAF_REPEAT557_RPE-8%2C RPE-8 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1200844	1201194	.	-	.	ID=gene1305;Name=RAF_RS06535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06535;old_locus_tag=RAF_ORF1176
NC_012633.1	Protein Homology	CDS	1200844	1201194	.	-	0	ID=cds1270;Parent=gene1305;Dbxref=Genbank:WP_012720075.1;Name=WP_012720075.1;gbkey=CDS;product=ferredoxin;protein_id=WP_012720075.1;transl_table=11
NC_012633.1	RefSeq	gene	1201199	1201891	.	-	.	ID=gene1306;Name=RAF_RS06540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06540;old_locus_tag=RAF_ORF1177
NC_012633.1	Protein Homology	CDS	1201199	1201891	.	-	0	ID=cds1271;Parent=gene1306;Dbxref=Genbank:WP_012720076.1;Name=WP_012720076.1;gbkey=CDS;product=Heme exporter protein C;protein_id=WP_012720076.1;transl_table=11
NC_012633.1	RefSeq	gene	1201906	1202412	.	-	.	ID=gene1307;Name=RAF_RS06545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06545;old_locus_tag=RAF_ORF1178
NC_012633.1	Protein Homology	CDS	1201906	1202412	.	-	0	ID=cds1272;Parent=gene1307;Dbxref=Genbank:WP_004997207.1;Name=WP_004997207.1;gbkey=CDS;product=deaminase;protein_id=WP_004997207.1;transl_table=11
NC_012633.1	RefSeq	gene	1202393	1203298	.	-	.	ID=gene1308;Name=RAF_RS06550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06550;old_locus_tag=RAF_ORF1179
NC_012633.1	Protein Homology	CDS	1202393	1203298	.	-	0	ID=cds1273;Parent=gene1308;Dbxref=Genbank:WP_041471974.1;Name=WP_041471974.1;gbkey=CDS;product=protein p34;protein_id=WP_041471974.1;transl_table=11
NC_012633.1	RefSeq	gene	1203480	1203959	.	+	.	ID=gene1309;Name=RAF_RS06555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06555;old_locus_tag=RAF_ORF1180
NC_012633.1	Protein Homology	CDS	1203480	1203959	.	+	0	ID=cds1274;Parent=gene1309;Dbxref=Genbank:WP_012720078.1;Name=WP_012720078.1;gbkey=CDS;product=membrane protein;protein_id=WP_012720078.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1203970	1204043	.	-	.	ID=id617;Note=RAF_REPEAT558_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1204090	1204554	.	+	.	ID=gene1310;Name=RAF_RS06560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06560;old_locus_tag=RAF_ORF1181
NC_012633.1	Protein Homology	CDS	1204090	1204554	.	+	0	ID=cds1275;Parent=gene1310;Dbxref=Genbank:WP_012720079.1;Name=WP_012720079.1;gbkey=CDS;product=phosphatidylethanolamine-binding protein;protein_id=WP_012720079.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1204577	1204678	.	-	.	ID=id618;Note=RAF_REPEAT559_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1204694	1205395	.	+	.	ID=gene1311;Name=RAF_RS06565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06565;old_locus_tag=RAF_ORF1182
NC_012633.1	Protein Homology	CDS	1204694	1205395	.	+	0	ID=cds1276;Parent=gene1311;Dbxref=Genbank:WP_012720080.1;Name=WP_012720080.1;gbkey=CDS;product=zinc ABC transporter ATP-binding protein;protein_id=WP_012720080.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1205428	1205462	.	-	.	ID=id619;Note=RAF_REPEAT560_RPE-1%2C RPE-1 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1205492	1205836	.	-	.	ID=gene1312;Name=RAF_RS06570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06570
NC_012633.1	Protein Homology	CDS	1205492	1205836	.	-	0	ID=cds1277;Parent=gene1312;Dbxref=Genbank:WP_041471975.1;Name=WP_041471975.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471975.1;transl_table=11
NC_012633.1	RefSeq	gene	1205985	1206221	.	-	.	ID=gene1313;Name=RAF_RS06575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06575
NC_012633.1	Protein Homology	CDS	1205985	1206221	.	-	0	ID=cds1278;Parent=gene1313;Dbxref=Genbank:WP_016830557.1;Name=WP_016830557.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_016830557.1;transl_table=11
NC_012633.1	RefSeq	gene	1206202	1206491	.	-	.	ID=gene1314;Name=RAF_RS06580;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS06580;pseudo=true
NC_012633.1	Protein Homology	CDS	1206202	1206491	.	-	0	ID=cds1279;Parent=gene1314;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1206660	1207010	.	-	.	ID=gene1315;Name=RAF_RS06585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06585;old_locus_tag=RAF_ORF1185
NC_012633.1	Protein Homology	CDS	1206660	1207010	.	-	0	ID=cds1280;Parent=gene1315;Dbxref=Genbank:WP_014273847.1;Name=WP_014273847.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_014273847.1;transl_table=11
NC_012633.1	RefSeq	gene	1207147	1207341	.	-	.	ID=gene1316;Name=RAF_RS06590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06590
NC_012633.1	Protein Homology	CDS	1207147	1207341	.	-	0	ID=cds1281;Parent=gene1316;Dbxref=Genbank:WP_004997188.1;Name=WP_004997188.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004997188.1;transl_table=11
NC_012633.1	RefSeq	gene	1207601	1210462	.	-	.	ID=gene1317;Name=RAF_RS06595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06595;old_locus_tag=RAF_ORF1186
NC_012633.1	Protein Homology	CDS	1207601	1210462	.	-	0	ID=cds1282;Parent=gene1317;Dbxref=Genbank:WP_041471976.1;Name=WP_041471976.1;gbkey=CDS;product=UvrABC system protein A;protein_id=WP_041471976.1;transl_table=11
NC_012633.1	RefSeq	gene	1210571	1211029	.	+	.	ID=gene1318;Name=RAF_RS06600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06600;old_locus_tag=RAF_ORF1187
NC_012633.1	Protein Homology	CDS	1210571	1211029	.	+	0	ID=cds1283;Parent=gene1318;Dbxref=Genbank:WP_010977855.1;Name=WP_010977855.1;Note=binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA;gbkey=CDS;product=single-stranded DNA-binding protein;protein_id=WP_010977855.1;transl_table=11
NC_012633.1	RefSeq	gene	1211041	1211871	.	+	.	ID=gene1319;Name=RAF_RS06605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06605;old_locus_tag=RAF_ORF1188
NC_012633.1	Protein Homology	CDS	1211041	1211871	.	+	0	ID=cds1284;Parent=gene1319;Dbxref=Genbank:WP_012720082.1;Name=WP_012720082.1;gbkey=CDS;product=peptidase;protein_id=WP_012720082.1;transl_table=11
NC_012633.1	RefSeq	gene	1211912	1212205	.	+	.	ID=gene1320;Name=RAF_RS06610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06610;old_locus_tag=RAF_ORF1189
NC_012633.1	Protein Homology	CDS	1211912	1212205	.	+	0	ID=cds1285;Parent=gene1320;Dbxref=Genbank:WP_012720083.1;Name=WP_012720083.1;gbkey=CDS;product=MFS transporter;protein_id=WP_012720083.1;transl_table=11
NC_012633.1	RefSeq	gene	1212296	1212502	.	-	.	ID=gene1321;Name=RAF_RS06615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06615;old_locus_tag=RAF_ORF1190
NC_012633.1	Protein Homology	CDS	1212296	1212502	.	-	0	ID=cds1286;Parent=gene1321;Dbxref=Genbank:WP_012720084.1;Name=WP_012720084.1;gbkey=CDS;product=lysozyme;protein_id=WP_012720084.1;transl_table=11
NC_012633.1	RefSeq	gene	1212882	1213085	.	-	.	ID=gene1322;Name=RAF_RS06620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06620
NC_012633.1	Protein Homology	CDS	1212882	1213085	.	-	0	ID=cds1287;Parent=gene1322;Dbxref=Genbank:WP_041471977.1;Name=WP_041471977.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471977.1;transl_table=11
NC_012633.1	RefSeq	gene	1213368	1213444	.	-	.	ID=gene1323;Name=RAF_RS06625;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS06625;old_locus_tag=RAF_RNA36
NC_012633.1	tRNAscan-SE	tRNA	1213368	1213444	.	-	.	ID=rna35;Parent=gene1323;anticodon=(pos:complement(1213408..1213410));gbkey=tRNA;product=tRNA-Arg
NC_012633.1	tRNAscan-SE	exon	1213368	1213444	.	-	.	ID=id620;Parent=rna35;anticodon=(pos:complement(1213408..1213410));gbkey=tRNA;product=tRNA-Arg
NC_012633.1	RefSeq	gene	1213541	1213858	.	+	.	ID=gene1324;Name=RAF_RS06630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06630;old_locus_tag=RAF_ORF1191
NC_012633.1	Protein Homology	CDS	1213541	1213858	.	+	0	ID=cds1288;Parent=gene1324;Dbxref=Genbank:WP_004997180.1;Name=WP_004997180.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004997180.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1213883	1213957	.	-	.	ID=id621;Note=RAF_REPEAT561_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1214002	1215867	.	+	.	ID=gene1325;Name=RAF_RS06635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06635;old_locus_tag=RAF_ORF1192
NC_012633.1	Protein Homology	CDS	1214002	1215867	.	+	0	ID=cds1289;Parent=gene1325;Dbxref=Genbank:WP_012720085.1;Name=WP_012720085.1;Note=molecular chaperone;gbkey=CDS;product=heat-shock protein Hsp90;protein_id=WP_012720085.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1215935	1216038	.	-	.	ID=id622;Note=RAF_REPEAT562_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1216046	1217290	.	+	.	ID=gene1326;Name=RAF_RS06640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06640;old_locus_tag=RAF_ORF1193
NC_012633.1	Protein Homology	CDS	1216046	1217290	.	+	0	ID=cds1290;Parent=gene1326;Dbxref=Genbank:WP_012720086.1;Name=WP_012720086.1;Note=catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine;gbkey=CDS;product=5-aminolevulinate synthase;protein_id=WP_012720086.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1217384	1217481	.	-	.	ID=id623;Note=RAF_REPEAT563_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1218219	1218541	.	+	.	ID=gene1327;Name=RAF_RS06645;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS06645;pseudo=true
NC_012633.1	Protein Homology	CDS	1218219	1218541	.	+	0	ID=cds1291;Parent=gene1327;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1218945	1220282	.	+	.	ID=gene1328;Name=RAF_RS06650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06650;old_locus_tag=RAF_ORF1194
NC_012633.1	Protein Homology	CDS	1218945	1220282	.	+	0	ID=cds1292;Parent=gene1328;Dbxref=Genbank:WP_012720087.1;Name=WP_012720087.1;gbkey=CDS;product=trigger factor;protein_id=WP_012720087.1;transl_table=11
NC_012633.1	RefSeq	gene	1220386	1221378	.	-	.	ID=gene1329;Name=RAF_RS06655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06655;old_locus_tag=RAF_ORF1195
NC_012633.1	Protein Homology	CDS	1220386	1221378	.	-	0	ID=cds1293;Parent=gene1329;Dbxref=Genbank:WP_041472053.1;Name=WP_041472053.1;gbkey=CDS;product=GTPase CgtA;protein_id=WP_041472053.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1221419	1221478	.	+	.	ID=id624;Note=RAF_REPEAT564_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1221487	1222794	.	-	.	ID=gene1330;Name=gltA;gbkey=Gene;gene=gltA;gene_biotype=protein_coding;locus_tag=RAF_RS06660;old_locus_tag=RAF_ORF1196
NC_012633.1	Protein Homology	CDS	1221487	1222794	.	-	0	ID=cds1294;Parent=gene1330;Dbxref=Genbank:WP_012720089.1;Name=WP_012720089.1;Note=type II enzyme%3B in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate%3B allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation%3B forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A%3B functions in TCA cycle%2C glyoxylate cycle and respiration%3B enzyme from Helicobacter pylori is not inhibited by NADH;gbkey=CDS;gene=gltA;product=citrate synthase;protein_id=WP_012720089.1;transl_table=11
NC_012633.1	RefSeq	gene	1223109	1223228	.	-	.	ID=gene1331;Name=RAF_RS06665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06665
NC_012633.1	Protein Homology	CDS	1223109	1223228	.	-	0	ID=cds1295;Parent=gene1331;Dbxref=Genbank:WP_014411139.1;Name=WP_014411139.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_014411139.1;transl_table=11
NC_012633.1	RefSeq	gene	1223495	1224280	.	-	.	ID=gene1332;Name=RAF_RS06670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06670;old_locus_tag=RAF_ORF1197
NC_012633.1	Protein Homology	CDS	1223495	1224280	.	-	0	ID=cds1296;Parent=gene1332;Dbxref=Genbank:WP_041471978.1;Name=WP_041471978.1;gbkey=CDS;product=DNA polymerase;protein_id=WP_041471978.1;transl_table=11
NC_012633.1	RefSeq	gene	1224297	1225238	.	+	.	ID=gene1333;Name=RAF_RS06675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06675;old_locus_tag=RAF_ORF1198
NC_012633.1	Protein Homology	CDS	1224297	1225238	.	+	0	ID=cds1297;Parent=gene1333;Dbxref=Genbank:WP_012720091.1;Name=WP_012720091.1;gbkey=CDS;product=ribosomal large subunit pseudouridine synthase D;protein_id=WP_012720091.1;transl_table=11
NC_012633.1	RefSeq	gene	1225530	1225859	.	+	.	ID=gene1334;Name=RAF_RS06680;end_range=1225859,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS06680;partial=true;pseudo=true
NC_012633.1	Protein Homology	CDS	1225530	1225859	.	+	0	ID=cds1298;Parent=gene1334;end_range=1225859,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1225791	1226066	.	+	.	ID=gene1335;Name=RAF_RS06685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06685
NC_012633.1	Protein Homology	CDS	1225791	1226066	.	+	0	ID=cds1299;Parent=gene1335;Dbxref=Genbank:WP_010977869.1;Name=WP_010977869.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010977869.1;transl_table=11
NC_012633.1	RefSeq	gene	1226057	1226662	.	+	.	ID=gene1336;Name=RAF_RS06690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06690
NC_012633.1	Protein Homology	CDS	1226057	1226662	.	+	0	ID=cds1300;Parent=gene1336;Dbxref=Genbank:WP_049752720.1;Name=WP_049752720.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_049752720.1;transl_table=11
NC_012633.1	RefSeq	gene	1226691	1226876	.	+	.	ID=gene1337;Name=RAF_RS06695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06695
NC_012633.1	Protein Homology	CDS	1226691	1226876	.	+	0	ID=cds1301;Parent=gene1337;Dbxref=Genbank:WP_041471979.1;Name=WP_041471979.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471979.1;transl_table=11
NC_012633.1	RefSeq	gene	1226885	1228459	.	+	.	ID=gene1338;Name=RAF_RS06700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06700;old_locus_tag=RAF_ORF1201
NC_012633.1	Protein Homology	CDS	1226885	1228459	.	+	0	ID=cds1302;Parent=gene1338;Dbxref=Genbank:WP_010977871.1;Name=WP_010977871.1;Note=fusion of hemK/trmB%3B N-terminal HemK domain transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB%3B C-terminal;gbkey=CDS;product=bifunctional methyltransferase;protein_id=WP_010977871.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1227208	1227276	.	+	.	ID=id625;Note=RAF_REPEAT565_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1228425	1229363	.	-	.	ID=gene1339;Name=RAF_RS06705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06705;old_locus_tag=RAF_ORF1202
NC_012633.1	Protein Homology	CDS	1228425	1229363	.	-	0	ID=cds1303;Parent=gene1339;Dbxref=Genbank:WP_004997156.1;Name=WP_004997156.1;gbkey=CDS;product=translation factor Sua5;protein_id=WP_004997156.1;transl_table=11
NC_012633.1	RefSeq	gene	1229360	1231354	.	-	.	ID=gene1340;Name=RAF_RS06710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06710;old_locus_tag=RAF_ORF1203
NC_012633.1	Protein Homology	CDS	1229360	1231354	.	-	0	ID=cds1304;Parent=gene1340;Dbxref=Genbank:WP_012720092.1;Name=WP_012720092.1;gbkey=CDS;product=glycine--tRNA ligase subunit beta;protein_id=WP_012720092.1;transl_table=11
NC_012633.1	RefSeq	gene	1231351	1232217	.	-	.	ID=gene1341;Name=RAF_RS06715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06715;old_locus_tag=RAF_ORF1204
NC_012633.1	Protein Homology	CDS	1231351	1232217	.	-	0	ID=cds1305;Parent=gene1341;Dbxref=Genbank:WP_010977874.1;Name=WP_010977874.1;gbkey=CDS;product=glycine--tRNA ligase subunit alpha;protein_id=WP_010977874.1;transl_table=11
NC_012633.1	RefSeq	gene	1232249	1232656	.	-	.	ID=gene1342;Name=RAF_RS06720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06720;old_locus_tag=RAF_ORF1205
NC_012633.1	Protein Homology	CDS	1232249	1232656	.	-	0	ID=cds1306;Parent=gene1342;Dbxref=Genbank:WP_012720093.1;Name=WP_012720093.1;gbkey=CDS;product=toxin;protein_id=WP_012720093.1;transl_table=11
NC_012633.1	RefSeq	gene	1232653	1232838	.	-	.	ID=gene1343;Name=RAF_RS06725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06725
NC_012633.1	Protein Homology	CDS	1232653	1232838	.	-	0	ID=cds1307;Parent=gene1343;Dbxref=Genbank:WP_012720094.1;Name=WP_012720094.1;gbkey=CDS;product=prevent-host-death family protein;protein_id=WP_012720094.1;transl_table=11
NC_012633.1	RefSeq	gene	1232986	1233615	.	-	.	ID=gene1344;Name=RAF_RS06730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06730;old_locus_tag=RAF_ORF1207
NC_012633.1	Protein Homology	CDS	1232986	1233615	.	-	0	ID=cds1308;Parent=gene1344;Dbxref=Genbank:WP_004997144.1;Name=WP_004997144.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_004997144.1;transl_table=11
NC_012633.1	RefSeq	gene	1233617	1234870	.	-	.	ID=gene1345;Name=RAF_RS06735;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS06735;pseudo=true
NC_012633.1	Protein Homology	CDS	1233617	1234870	.	-	0	ID=cds1309;Parent=gene1345;exception=annotated by transcript or proteomic data;gbkey=CDS;product=MFS transporter;pseudo=true;transl_except=(pos:complement(1234232..1234234)%2Caa:Other);transl_table=11
NC_012633.1	RefSeq	repeat_region	1234984	1235079	.	+	.	ID=id626;Note=RAF_REPEAT566_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1235086	1236036	.	-	.	ID=gene1346;Name=RAF_RS06740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06740;old_locus_tag=RAF_ORF1211
NC_012633.1	Protein Homology	CDS	1235086	1236036	.	-	0	ID=cds1310;Parent=gene1346;Dbxref=Genbank:WP_012720095.1;Name=WP_012720095.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012720095.1;transl_table=11
NC_012633.1	RefSeq	gene	1236046	1236681	.	-	.	ID=gene1347;Name=RAF_RS06745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06745;old_locus_tag=RAF_ORF1212
NC_012633.1	Protein Homology	CDS	1236046	1236681	.	-	0	ID=cds1311;Parent=gene1347;Dbxref=Genbank:WP_012720096.1;Name=WP_012720096.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012720096.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1236725	1236749	.	+	.	ID=id627;Note=RAF_REPEAT567_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1236756	1238327	.	-	.	ID=gene1348;Name=RAF_RS06750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06750;old_locus_tag=RAF_ORF1213
NC_012633.1	Protein Homology	CDS	1236756	1238327	.	-	0	ID=cds1312;Parent=gene1348;Dbxref=Genbank:WP_012720097.1;Name=WP_012720097.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012720097.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1238406	1238475	.	+	.	ID=id628;Note=RAF_REPEAT568_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1238526	1241162	.	+	.	ID=gene1349;Name=RAF_RS06755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06755;old_locus_tag=RAF_ORF1214
NC_012633.1	Protein Homology	CDS	1238526	1241162	.	+	0	ID=cds1313;Parent=gene1349;Dbxref=Genbank:WP_012720098.1;Name=WP_012720098.1;gbkey=CDS;product=alanyl-tRNA synthetase;protein_id=WP_012720098.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1241242	1241307	.	+	.	ID=id629;Note=RAF_REPEAT569_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1241371	1242108	.	-	.	ID=gene1350;Name=RAF_RS06760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06760;old_locus_tag=RAF_ORF1215
NC_012633.1	Protein Homology	CDS	1241371	1242108	.	-	0	ID=cds1314;Parent=gene1350;Dbxref=Genbank:WP_012720099.1;Name=WP_012720099.1;gbkey=CDS;product=tRNA pseudouridine synthase A;protein_id=WP_012720099.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1242119	1242150	.	+	.	ID=id630;Note=RAF_REPEAT570_RPE-4%2C RPE-4 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1242204	1244108	.	-	.	ID=gene1351;Name=RAF_RS06765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06765;old_locus_tag=RAF_ORF1216
NC_012633.1	Protein Homology	CDS	1242204	1244108	.	-	0	ID=cds1315;Parent=gene1351;Dbxref=Genbank:WP_004997130.1;Name=WP_004997130.1;gbkey=CDS;product=RNA polymerase sigma factor RpoD;protein_id=WP_004997130.1;transl_table=11
NC_012633.1	RefSeq	gene	1244153	1245940	.	-	.	ID=gene1352;Name=RAF_RS06770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06770;old_locus_tag=RAF_ORF1217
NC_012633.1	Protein Homology	CDS	1244153	1245940	.	-	0	ID=cds1316;Parent=gene1352;Dbxref=Genbank:WP_012720100.1;Name=WP_012720100.1;gbkey=CDS;product=DNA primase;protein_id=WP_012720100.1;transl_table=11
NC_012633.1	RefSeq	gene	1245945	1246559	.	-	.	ID=gene1353;Name=RAF_RS06775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06775;old_locus_tag=RAF_ORF1218
NC_012633.1	Protein Homology	CDS	1245945	1246559	.	-	0	ID=cds1317;Parent=gene1353;Dbxref=Genbank:WP_012720101.1;Name=WP_012720101.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012720101.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1246631	1246655	.	+	.	ID=id631;Note=RAF_REPEAT571_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1246827	1247315	.	+	.	ID=gene1354;Name=RAF_RS06780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06780;old_locus_tag=RAF_ORF1219
NC_012633.1	Protein Homology	CDS	1246827	1247315	.	+	0	ID=cds1318;Parent=gene1354;Dbxref=Genbank:WP_041471980.1;Name=WP_041471980.1;gbkey=CDS;product=transcription elongation factor GreA;protein_id=WP_041471980.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1247287	1247388	.	-	.	ID=id632;Note=RAF_REPEAT572_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1247474	1247872	.	-	.	ID=gene1355;Name=RAF_RS06785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06785;old_locus_tag=RAF_ORF1220
NC_012633.1	Protein Homology	CDS	1247474	1247872	.	-	0	ID=cds1319;Parent=gene1355;Dbxref=Genbank:WP_012720103.1;Name=WP_012720103.1;gbkey=CDS;product=NAD(P) transhydrogenase subunit alpha;protein_id=WP_012720103.1;transl_table=11
NC_012633.1	RefSeq	gene	1247869	1248993	.	-	.	ID=gene1356;Name=RAF_RS06790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06790;old_locus_tag=RAF_ORF1221
NC_012633.1	Protein Homology	CDS	1247869	1248993	.	-	0	ID=cds1320;Parent=gene1356;Dbxref=Genbank:WP_012720104.1;Name=WP_012720104.1;gbkey=CDS;product=NADP transhydrogenase subunit alpha;protein_id=WP_012720104.1;transl_table=11
NC_012633.1	RefSeq	gene	1249069	1249707	.	+	.	ID=gene1357;Name=RAF_RS06795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06795;old_locus_tag=RAF_ORF1222
NC_012633.1	Protein Homology	CDS	1249069	1249707	.	+	0	ID=cds1321;Parent=gene1357;Dbxref=Genbank:WP_012720105.1;Name=WP_012720105.1;gbkey=CDS;product=membrane protein;protein_id=WP_012720105.1;transl_table=11
NC_012633.1	RefSeq	gene	1249732	1249814	.	+	.	ID=gene1358;Name=ffs;gbkey=Gene;gene=ffs;gene_biotype=SRP_RNA;locus_tag=RAF_RS07115
NC_012633.1	RefSeq	ncRNA	1249732	1249814	.	+	.	ID=rna36;Parent=gene1358;gbkey=ncRNA;gene=ffs;ncrna_class=SRP_RNA;product=signal recognition particle RNA (4.5S RNA)
NC_012633.1	RefSeq	exon	1249732	1249814	.	+	.	ID=id633;Parent=rna36;gbkey=ncRNA;gene=ffs;ncrna_class=SRP_RNA;product=signal recognition particle RNA (4.5S RNA)
NC_012633.1	RefSeq	repeat_region	1249861	1249986	.	+	.	ID=id634;Note=RAF_REPEAT573_RPE-6%2C RPE-6 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1249933	1251462	.	+	.	ID=gene1359;Name=RAF_RS06800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06800;old_locus_tag=RAF_ORF1223
NC_012633.1	Protein Homology	CDS	1249933	1251462	.	+	0	ID=cds1322;Parent=gene1359;Dbxref=Genbank:WP_041472057.1;Name=WP_041472057.1;Note=catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand%3B rhe tau chain serves as a scaffold to help in the dimerizaton of the alpha%2Cepsilon and theta core complex%3B the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA;gbkey=CDS;product=DNA polymerase III subunit gamma/tau;protein_id=WP_041472057.1;transl_table=11
NC_012633.1	RefSeq	gene	1251482	1251805	.	+	.	ID=gene1360;Name=RAF_RS06805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06805;old_locus_tag=RAF_ORF1224
NC_012633.1	Protein Homology	CDS	1251482	1251805	.	+	0	ID=cds1323;Parent=gene1360;Dbxref=Genbank:WP_010977891.1;Name=WP_010977891.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010977891.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1251881	1251947	.	+	.	ID=id635;Note=RAF_REPEAT574_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	repeat_region	1252526	1252671	.	+	.	ID=id636;Note=RAF_REPEAT575_RPE-1%2C RPE-1 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1252670	1253365	.	-	.	ID=gene1361;Name=RAF_RS06810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06810;old_locus_tag=RAF_ORF1225
NC_012633.1	Protein Homology	CDS	1252670	1253365	.	-	0	ID=cds1324;Parent=gene1361;Dbxref=Genbank:WP_012720107.1;Name=WP_012720107.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012720107.1;transl_table=11
NC_012633.1	RefSeq	gene	1253656	1253847	.	-	.	ID=gene1362;Name=RAF_RS06815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06815
NC_012633.1	Protein Homology	CDS	1253656	1253847	.	-	0	ID=cds1325;Parent=gene1362;Dbxref=Genbank:WP_041471981.1;Name=WP_041471981.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471981.1;transl_table=11
NC_012633.1	RefSeq	gene	1254195	1254408	.	-	.	ID=gene1363;Name=RAF_RS06820;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS06820;pseudo=true
NC_012633.1	Protein Homology	CDS	1254195	1254408	.	-	0	ID=cds1326;Parent=gene1363;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	repeat_region	1254504	1254559	.	-	.	ID=id637;Note=RAF_REPEAT576_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1254553	1254792	.	-	.	ID=gene1364;Name=RAF_RS06825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06825;old_locus_tag=RAF_ORF1226
NC_012633.1	Protein Homology	CDS	1254553	1254792	.	-	0	ID=cds1327;Parent=gene1364;Dbxref=Genbank:WP_012720108.1;Name=WP_012720108.1;gbkey=CDS;product=prevent-host-death family protein;protein_id=WP_012720108.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1254820	1254946	.	+	.	ID=id638;Note=RAF_REPEAT577_RPE-5%2C RPE-5 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1254998	1255720	.	-	.	ID=gene1365;Name=glnQ;gbkey=Gene;gene=glnQ;gene_biotype=protein_coding;locus_tag=RAF_RS06830;old_locus_tag=RAF_ORF1227
NC_012633.1	Protein Homology	CDS	1254998	1255720	.	-	0	ID=cds1328;Parent=gene1365;Dbxref=Genbank:WP_010977895.1;Name=WP_010977895.1;Note=similar to ATP-binding component of ABC transporters;gbkey=CDS;gene=glnQ;product=ABC transporter ATP-binding protein;protein_id=WP_010977895.1;transl_table=11
NC_012633.1	RefSeq	gene	1255724	1256488	.	-	.	ID=gene1366;Name=RAF_RS06835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06835;old_locus_tag=RAF_ORF1228
NC_012633.1	Protein Homology	CDS	1255724	1256488	.	-	0	ID=cds1329;Parent=gene1366;Dbxref=Genbank:WP_012720109.1;Name=WP_012720109.1;gbkey=CDS;product=MBL fold metallo-hydrolase;protein_id=WP_012720109.1;transl_table=11
NC_012633.1	RefSeq	gene	1256503	1257150	.	+	.	ID=gene1367;Name=RAF_RS06840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06840;old_locus_tag=RAF_ORF1229
NC_012633.1	Protein Homology	CDS	1256503	1257150	.	+	0	ID=cds1330;Parent=gene1367;Dbxref=Genbank:WP_012720110.1;Name=WP_012720110.1;gbkey=CDS;product=PAP2 family phosphoesterase;protein_id=WP_012720110.1;transl_table=11
NC_012633.1	RefSeq	gene	1257244	1257507	.	+	.	ID=gene1368;Name=RAF_RS06845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06845;old_locus_tag=RAF_ORF1230
NC_012633.1	Protein Homology	CDS	1257244	1257507	.	+	0	ID=cds1331;Parent=gene1368;Dbxref=Genbank:WP_012151450.1;Name=WP_012151450.1;gbkey=CDS;product=XRE family transcriptional regulator;protein_id=WP_012151450.1;transl_table=11
NC_012633.1	RefSeq	gene	1257881	1258963	.	+	.	ID=gene1369;Name=RAF_RS06850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06850;old_locus_tag=RAF_ORF1232
NC_012633.1	Protein Homology	CDS	1257881	1258963	.	+	0	ID=cds1332;Parent=gene1369;Dbxref=Genbank:WP_041472058.1;Name=WP_041472058.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041472058.1;transl_table=11
NC_012633.1	RefSeq	gene	1258969	1259433	.	-	.	ID=gene1370;Name=RAF_RS06855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06855;old_locus_tag=RAF_ORF1233
NC_012633.1	Protein Homology	CDS	1258969	1259433	.	-	0	ID=cds1333;Parent=gene1370;Dbxref=Genbank:WP_004997101.1;Name=WP_004997101.1;Note=binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB;gbkey=CDS;product=DNA polymerase III subunit chi;protein_id=WP_004997101.1;transl_table=11
NC_012633.1	RefSeq	gene	1259470	1259554	.	-	.	ID=gene1371;Name=RAF_RS06860;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS06860;old_locus_tag=RAF_RNA38
NC_012633.1	tRNAscan-SE	tRNA	1259470	1259554	.	-	.	ID=rna37;Parent=gene1371;anticodon=(pos:complement(1259518..1259520));gbkey=tRNA;product=tRNA-Leu
NC_012633.1	tRNAscan-SE	exon	1259470	1259554	.	-	.	ID=id639;Parent=rna37;anticodon=(pos:complement(1259518..1259520));gbkey=tRNA;product=tRNA-Leu
NC_012633.1	RefSeq	repeat_region	1259609	1259633	.	+	.	ID=id640;Note=RAF_REPEAT578_RPE-6%2C RPE-6 Part;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1259633	1260778	.	-	.	ID=gene1372;Name=RAF_RS06865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06865;old_locus_tag=RAF_ORF1234
NC_012633.1	Protein Homology	CDS	1259633	1260778	.	-	0	ID=cds1334;Parent=gene1372;Dbxref=Genbank:WP_012720113.1;Name=WP_012720113.1;gbkey=CDS;product=succinyl-diaminopimelate desuccinylase;protein_id=WP_012720113.1;transl_table=11
NC_012633.1	RefSeq	gene	1260782	1261038	.	-	.	ID=gene1373;Name=RAF_RS06870;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS06870;pseudo=true
NC_012633.1	Protein Homology	CDS	1260782	1261038	.	-	0	ID=cds1335;Parent=gene1373;exception=annotated by transcript or proteomic data;gbkey=CDS;product=restriction endonuclease subunit S;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1261547	1261744	.	-	.	ID=gene1374;Name=RAF_RS06875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06875;old_locus_tag=RAF_ORF1236
NC_012633.1	Protein Homology	CDS	1261547	1261744	.	-	0	ID=cds1336;Parent=gene1374;Dbxref=Genbank:WP_012720115.1;Name=WP_012720115.1;gbkey=CDS;product=type I restriction endonuclease subunit S;protein_id=WP_012720115.1;transl_table=11
NC_012633.1	RefSeq	gene	1261857	1262255	.	-	.	ID=gene1375;Name=RAF_RS06880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06880
NC_012633.1	Protein Homology	CDS	1261857	1262255	.	-	0	ID=cds1337;Parent=gene1375;Dbxref=Genbank:WP_041471982.1;Name=WP_041471982.1;gbkey=CDS;product=restriction endonuclease subunit M;protein_id=WP_041471982.1;transl_table=11
NC_012633.1	RefSeq	gene	1262609	1262962	.	-	.	ID=gene1376;Name=RAF_RS06885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06885
NC_012633.1	Protein Homology	CDS	1262609	1262962	.	-	0	ID=cds1338;Parent=gene1376;Dbxref=Genbank:WP_041471983.1;Name=WP_041471983.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471983.1;transl_table=11
NC_012633.1	RefSeq	gene	1263093	1263230	.	-	.	ID=gene1377;Name=RAF_RS06890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06890
NC_012633.1	Protein Homology	CDS	1263093	1263230	.	-	0	ID=cds1339;Parent=gene1377;Dbxref=Genbank:WP_041471984.1;Name=WP_041471984.1;gbkey=CDS;product=type I restriction endonuclease subunit M;protein_id=WP_041471984.1;transl_table=11
NC_012633.1	RefSeq	gene	1263221	1263451	.	-	.	ID=gene1378;Name=RAF_RS06895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06895;old_locus_tag=RAF_ORF1240
NC_012633.1	Protein Homology	CDS	1263221	1263451	.	-	0	ID=cds1340;Parent=gene1378;Dbxref=Genbank:WP_012720116.1;Name=WP_012720116.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012720116.1;transl_table=11
NC_012633.1	RefSeq	gene	1263457	1263702	.	+	.	ID=gene1379;Name=RAF_RS06900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06900
NC_012633.1	Protein Homology	CDS	1263457	1263702	.	+	0	ID=cds1341;Parent=gene1379;Dbxref=Genbank:WP_014411164.1;Name=WP_014411164.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_014411164.1;transl_table=11
NC_012633.1	RefSeq	gene	1264004	1264444	.	+	.	ID=gene1380;Name=RAF_RS06905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06905
NC_012633.1	Protein Homology	CDS	1264004	1264444	.	+	0	ID=cds1342;Parent=gene1380;Dbxref=Genbank:WP_041472059.1;Name=WP_041472059.1;gbkey=CDS;product=sodium:proton antiporter;protein_id=WP_041472059.1;transl_table=11
NC_012633.1	RefSeq	gene	1264533	1265048	.	-	.	ID=gene1381;Name=RAF_RS06910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06910;old_locus_tag=RAF_ORF1242
NC_012633.1	Protein Homology	CDS	1264533	1265048	.	-	0	ID=cds1343;Parent=gene1381;Dbxref=Genbank:WP_010977909.1;Name=WP_010977909.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_010977909.1;transl_table=11
NC_012633.1	RefSeq	gene	1265045	1265674	.	-	.	ID=gene1382;Name=RAF_RS06915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06915;old_locus_tag=RAF_ORF1243
NC_012633.1	Protein Homology	CDS	1265045	1265674	.	-	0	ID=cds1344;Parent=gene1382;Dbxref=Genbank:WP_012720118.1;Name=WP_012720118.1;Note=lipoyl/octanoyltransferase%3B catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein;gbkey=CDS;product=octanoyltransferase;protein_id=WP_012720118.1;transl_table=11
NC_012633.1	RefSeq	gene	1265671	1266414	.	-	.	ID=gene1383;Name=RAF_RS06920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06920;old_locus_tag=RAF_ORF1244
NC_012633.1	Protein Homology	CDS	1265671	1266414	.	-	0	ID=cds1345;Parent=gene1383;Dbxref=Genbank:WP_004997081.1;Name=WP_004997081.1;gbkey=CDS;product=nucleoside transporter;protein_id=WP_004997081.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1266500	1266577	.	-	.	ID=id641;Note=RAF_REPEAT579_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1266652	1266726	.	-	.	ID=gene1384;Name=RAF_RS06925;gbkey=Gene;gene_biotype=tRNA;locus_tag=RAF_RS06925;old_locus_tag=RAF_RNA39
NC_012633.1	tRNAscan-SE	tRNA	1266652	1266726	.	-	.	ID=rna38;Parent=gene1384;anticodon=(pos:complement(1266692..1266694));gbkey=tRNA;product=tRNA-Thr
NC_012633.1	tRNAscan-SE	exon	1266652	1266726	.	-	.	ID=id642;Parent=rna38;anticodon=(pos:complement(1266692..1266694));gbkey=tRNA;product=tRNA-Thr
NC_012633.1	RefSeq	repeat_region	1266759	1266851	.	-	.	ID=id643;Note=RAF_REPEAT580_RPE-4%2C RPE-4 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1266911	1267246	.	-	.	ID=gene1385;Name=RAF_RS06930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06930;old_locus_tag=RAF_ORF1245
NC_012633.1	Protein Homology	CDS	1266911	1267246	.	-	0	ID=cds1346;Parent=gene1385;Dbxref=Genbank:WP_004997078.1;Name=WP_004997078.1;gbkey=CDS;product=30S ribosomal protein S16;protein_id=WP_004997078.1;transl_table=11
NC_012633.1	RefSeq	gene	1267263	1267433	.	-	.	ID=gene1386;Name=RAF_RS06935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06935;old_locus_tag=RAF_ORF1246
NC_012633.1	Protein Homology	CDS	1267263	1267433	.	-	0	ID=cds1347;Parent=gene1386;Dbxref=Genbank:WP_004997072.1;Name=WP_004997072.1;gbkey=CDS;product=50S ribosomal protein L33;protein_id=WP_004997072.1;transl_table=11
NC_012633.1	RefSeq	gene	1267655	1269487	.	-	.	ID=gene1387;Name=RAF_RS06940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06940;old_locus_tag=RAF_ORF1247
NC_012633.1	Protein Homology	CDS	1267655	1269487	.	-	0	ID=cds1348;Parent=gene1387;Dbxref=Genbank:WP_012720119.1;Name=WP_012720119.1;gbkey=CDS;product=DNA mismatch repair protein MutL;protein_id=WP_012720119.1;transl_table=11
NC_012633.1	RefSeq	repeat_region	1269764	1269831	.	-	.	ID=id644;Note=RAF_REPEAT581_RPE-7%2C RPE-7 Full;gbkey=repeat_region
NC_012633.1	RefSeq	gene	1270036	1270236	.	+	.	ID=gene1388;Name=RAF_RS06945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06945
NC_012633.1	Protein Homology	CDS	1270036	1270236	.	+	0	ID=cds1349;Parent=gene1388;Dbxref=Genbank:WP_041471985.1;Name=WP_041471985.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_041471985.1;transl_table=11
NC_012633.1	RefSeq	gene	1271788	1272409	.	-	.	ID=gene1389;Name=RAF_RS06950;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS06950;pseudo=true
NC_012633.1	Protein Homology	CDS	1271788	1272409	.	-	0	ID=cds1350;Parent=gene1389;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11
NC_012633.1	RefSeq	gene	1272546	1273820	.	+	.	ID=gene1390;Name=RAF_RS06955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06955;old_locus_tag=RAF_ORF1253
NC_012633.1	Protein Homology	CDS	1272546	1273820	.	+	0	ID=cds1351;Parent=gene1390;Dbxref=Genbank:WP_012720120.1;Name=WP_012720120.1;gbkey=CDS;product=MFS transporter;protein_id=WP_012720120.1;transl_table=11
NC_012633.1	RefSeq	gene	1273804	1274643	.	+	.	ID=gene1391;Name=RAF_RS06960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06960;old_locus_tag=RAF_ORF1254
NC_012633.1	Protein Homology	CDS	1273804	1274643	.	+	0	ID=cds1352;Parent=gene1391;Dbxref=Genbank:WP_012720121.1;Name=WP_012720121.1;gbkey=CDS;product=coproporphyrinogen III oxidase;protein_id=WP_012720121.1;transl_table=11
NC_012633.1	RefSeq	gene	1274702	1275052	.	-	.	ID=gene1392;Name=RAF_RS06965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06965
NC_012633.1	Protein Homology	CDS	1274702	1275052	.	-	0	ID=cds1353;Parent=gene1392;Dbxref=Genbank:WP_041471986.1;Name=WP_041471986.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041471986.1;transl_table=11
NC_012633.1	RefSeq	gene	1275095	1275238	.	-	.	ID=gene1393;Name=RAF_RS06970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06970
NC_012633.1	Protein Homology	CDS	1275095	1275238	.	-	0	ID=cds1354;Parent=gene1393;Dbxref=Genbank:WP_016830581.1;Name=WP_016830581.1;gbkey=CDS;product=phage antirepressor;protein_id=WP_016830581.1;transl_table=11
NC_012633.1	RefSeq	gene	1275659	1276096	.	-	.	ID=gene1394;Name=RAF_RS06975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06975;old_locus_tag=RAF_ORF1257
NC_012633.1	Protein Homology	CDS	1275659	1276096	.	-	0	ID=cds1355;Parent=gene1394;Dbxref=Genbank:WP_012720122.1;Name=WP_012720122.1;gbkey=CDS;product=membrane protein;protein_id=WP_012720122.1;transl_table=11
NC_012633.1	RefSeq	gene	1276108	1277148	.	-	.	ID=gene1395;Name=RAF_RS06980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06980;old_locus_tag=RAF_ORF1258
NC_012633.1	Protein Homology	CDS	1276108	1277148	.	-	0	ID=cds1356;Parent=gene1395;Dbxref=Genbank:WP_012720123.1;Name=WP_012720123.1;gbkey=CDS;product=ferrochelatase;protein_id=WP_012720123.1;transl_table=11
NC_012633.1	RefSeq	gene	1277105	1278145	.	-	.	ID=gene1396;Name=RAF_RS06985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS06985;old_locus_tag=RAF_ORF1259
NC_012633.1	Protein Homology	CDS	1277105	1278145	.	-	0	ID=cds1357;Parent=gene1396;Dbxref=Genbank:WP_012720124.1;Name=WP_012720124.1;gbkey=CDS;product=uroporphyrinogen decarboxylase;protein_id=WP_012720124.1;transl_table=11
##sequence-region NC_012634.1 1 12377
##species http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=347255
NC_012634.1	RefSeq	region	1	12377	.	+	.	ID=id645;Dbxref=taxon:347255;Is_circular=true;Name=pRAF;country=Ethiopia;gbkey=Src;genome=plasmid;mol_type=genomic DNA;nat-host=Amblyomma variegatum (cattle tick);plasmid-name=pRAF;strain=ESF-5
NC_012634.1	RefSeq	gene	12174	14600	.	+	.	ID=gene1397;Name=RAF_RS07005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07005
NC_012634.1	Protein Homology	CDS	12174	14600	.	+	0	ID=cds1358;Parent=gene1397;Dbxref=Genbank:WP_041472060.1;Name=WP_041472060.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041472060.1;transl_table=11
NC_012634.1	RefSeq	gene	2263	2964	.	+	.	ID=gene1398;Name=RAF_RS07010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07010;old_locus_tag=RAF_pORF1261
NC_012634.1	Protein Homology	CDS	2263	2964	.	+	0	ID=cds1359;Parent=gene1398;Dbxref=Genbank:WP_012720126.1;Name=WP_012720126.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012720126.1;transl_table=11
NC_012634.1	RefSeq	gene	3122	3706	.	+	.	ID=gene1399;Name=RAF_RS07015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07015;old_locus_tag=RAF_pORF1262
NC_012634.1	Protein Homology	CDS	3122	3706	.	+	0	ID=cds1360;Parent=gene1399;Dbxref=Genbank:WP_012720127.1;Name=WP_012720127.1;gbkey=CDS;product=DNA invertase Pin;protein_id=WP_012720127.1;transl_table=11
NC_012634.1	RefSeq	gene	3862	4503	.	-	.	ID=gene1400;Name=RAF_RS07020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07020;old_locus_tag=RAF_pORF1263
NC_012634.1	Protein Homology	CDS	3862	4503	.	-	0	ID=cds1361;Parent=gene1400;Dbxref=Genbank:WP_012720128.1;Name=WP_012720128.1;gbkey=CDS;product=transposase;protein_id=WP_012720128.1;transl_table=11
NC_012634.1	RefSeq	repeat_region	3999	4493	.	+	.	ID=id646;gbkey=repeat_region
NC_012634.1	RefSeq	gene	4748	5761	.	-	.	ID=gene1401;Name=RAF_RS07025;gbkey=Gene;gene_biotype=pseudogene;locus_tag=RAF_RS07025;old_locus_tag=RAF_pORF1264;partial=true;pseudo=true;start_range=.,4748
NC_012634.1	Protein Homology	CDS	4748	5761	.	-	0	ID=cds1362;Parent=gene1401;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=transposase;pseudo=true;start_range=.,4748;transl_table=11
NC_012634.1	RefSeq	repeat_region	4759	5253	.	+	.	ID=id647;gbkey=repeat_region
NC_012634.1	RefSeq	gene	6236	6535	.	-	.	ID=gene1402;Name=RAF_RS07030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07030;old_locus_tag=RAF_pORF1266
NC_012634.1	Protein Homology	CDS	6236	6535	.	-	0	ID=cds1363;Parent=gene1402;Dbxref=Genbank:WP_012720131.1;Name=WP_012720131.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012720131.1;transl_table=11
NC_012634.1	RefSeq	gene	7255	7626	.	-	.	ID=gene1403;Name=RAF_RS07035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07035;old_locus_tag=RAF_pORF1267
NC_012634.1	GeneMarkS+	CDS	7255	7626	.	-	0	ID=cds1364;Parent=gene1403;Dbxref=Genbank:WP_012720132.1;Name=WP_012720132.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012720132.1;transl_table=11
NC_012634.1	RefSeq	gene	7776	10184	.	-	.	ID=gene1404;Name=RAF_RS07040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07040;old_locus_tag=RAF_pORF1268
NC_012634.1	Protein Homology	CDS	7776	10184	.	-	0	ID=cds1365;Parent=gene1404;Dbxref=Genbank:WP_041472061.1;Name=WP_041472061.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041472061.1;transl_table=11
NC_012634.1	RefSeq	gene	10574	11047	.	+	.	ID=gene1405;Name=RAF_RS07045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07045;old_locus_tag=RAF_pORF1269
NC_012634.1	Protein Homology	CDS	10574	11047	.	+	0	ID=cds1366;Parent=gene1405;Dbxref=Genbank:WP_012720134.1;Name=WP_012720134.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012720134.1;transl_table=11
NC_012634.1	RefSeq	gene	11231	11902	.	-	.	ID=gene1406;Name=RAF_RS07050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07050;old_locus_tag=RAF_pORF1270
NC_012634.1	Protein Homology	CDS	11231	11902	.	-	0	ID=cds1367;Parent=gene1406;Dbxref=Genbank:WP_012720135.1;Name=WP_012720135.1;gbkey=CDS;product=chromosome partitioning protein ParA;protein_id=WP_012720135.1;transl_table=11
NC_012634.1	RefSeq	gene	11957	12136	.	-	.	ID=gene1407;Name=RAF_RS07055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=RAF_RS07055
NC_012634.1	GeneMarkS+	CDS	11957	12136	.	-	0	ID=cds1368;Parent=gene1407;Dbxref=Genbank:WP_041472062.1;Name=WP_041472062.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_041472062.1;transl_table=11
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