locus-tag class description A3305_RS00025 PF00872 Transposase, Mutator family A3305_RS00070 PF00872 Transposase, Mutator family A3305_RS00085 PF00574 Clp protease A3305_RS00090 PF00575 S1 RNA binding domain A3305_RS00095 PF02224 Cytidylate kinase A3305_RS00120 PF02086 D12 class N6 adenine-specific DNA methyltransferase A3305_RS00125 PF00497 Bacterial extracellular solute-binding proteins, family 3 A3305_RS00125 PF00072 Response regulator receiver domain A3305_RS00125 PF01627 Hpt domain A3305_RS00125 PF00989 PAS fold A3305_RS00125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3305_RS00125 PF00512 His Kinase A (phospho-acceptor) domain A3305_RS00130 PF02824 TGS domain A3305_RS00130 PF13291 ACT domain A3305_RS00130 PF04607 Region found in RelA / SpoT proteins A3305_RS00135 PF04607 Region found in RelA / SpoT proteins A3305_RS00135 PF12796 Ankyrin repeats (3 copies) A3305_RS00135 PF00023 Ankyrin repeat A3305_RS00140 PF04607 Region found in RelA / SpoT proteins A3305_RS00140 PF02824 TGS domain A3305_RS00140 PF13291 ACT domain A3305_RS00150 PF00083 Sugar (and other) transporter A3305_RS00150 PF08946 Osmosensory transporter coiled coil A3305_RS00160 PF17841 BID domain of Bartonella effector protein (Bep) A3305_RS00160 PF03389 MobA/MobL family A3305_RS00160 PF01443 Viral (Superfamily 1) RNA helicase A3305_RS00165 PF04754 Putative transposase, YhgA-like A3305_RS00180 PF07916 TraG-like protein, N-terminal region A3305_RS00185 PF06122 Conjugative relaxosome accessory transposon protein A3305_RS00195 PF06986 Type-1V conjugative transfer system mating pair stabilisation A3305_RS00220 PF02824 TGS domain A3305_RS00220 PF04607 Region found in RelA / SpoT proteins A3305_RS00220 PF13291 ACT domain A3305_RS00225 PF00083 Sugar (and other) transporter A3305_RS00250 PF07516 SecA Wing and Scaffold domain A3305_RS00250 PF01043 SecA preprotein cross-linking domain A3305_RS00250 PF07517 SecA DEAD-like domain A3305_RS00285 PF03389 MobA/MobL family A3305_RS00285 PF01443 Viral (Superfamily 1) RNA helicase A3305_RS00285 PF17841 BID domain of Bartonella effector protein (Bep) A3305_RS00310 PF00270 DEAD/DEAH box helicase A3305_RS00310 PF00271 Helicase conserved C-terminal domain A3305_RS00310 PF17191 RecG wedge domain A3305_RS00330 PF01144 Coenzyme A transferase A3305_RS00335 PF01144 Coenzyme A transferase A3305_RS00350 PF00953 Glycosyl transferase family 4 A3305_RS00355 PF02875 Mur ligase family, glutamate ligase domain A3305_RS00355 PF01225 Mur ligase family, catalytic domain A3305_RS00355 PF08245 Mur ligase middle domain A3305_RS00360 PF08245 Mur ligase middle domain A3305_RS00360 PF02875 Mur ligase family, glutamate ligase domain A3305_RS00360 PF01225 Mur ligase family, catalytic domain A3305_RS00370 PF00271 Helicase conserved C-terminal domain A3305_RS00370 PF03461 TRCF domain A3305_RS00370 PF02559 CarD-like/TRCF domain A3305_RS00370 PF17757 UvrB interaction domain A3305_RS00370 PF00270 DEAD/DEAH box helicase A3305_RS00380 PF00581 Rhodanese-like domain A3305_RS00385 PF11638 DnaA N-terminal domain A3305_RS00385 PF08299 Bacterial dnaA protein helix-turn-helix A3305_RS00385 PF00308 Bacterial dnaA protein A3305_RS00420 PF07690 Major Facilitator Superfamily A3305_RS00430 PF01926 50S ribosome-binding GTPase A3305_RS00430 PF06071 Protein of unknown function (DUF933) A3305_RS00445 PF01195 Peptidyl-tRNA hydrolase A3305_RS00455 PF14693 Ribosomal protein TL5, C-terminal domain A3305_RS00455 PF01386 Ribosomal L25p family A3305_RS00470 PF04055 Radical SAM superfamily A3305_RS00475 PF01632 Ribosomal protein L35 A3305_RS00480 PF00453 Ribosomal protein L20 A3305_RS00485 PF00468 Ribosomal protein L34 A3305_RS00490 PF00825 Ribonuclease P A3305_RS00510 PF12796 Ankyrin repeats (3 copies) A3305_RS00525 PF01544 CorA-like Mg2+ transporter protein A3305_RS00555 PF00672 HAMP domain A3305_RS00555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3305_RS00555 PF00512 His Kinase A (phospho-acceptor) domain A3305_RS00560 PF01165 Ribosomal protein S21 A3305_RS00585 PF08264 Anticodon-binding domain of tRNA A3305_RS00585 PF00133 tRNA synthetases class I (I, L, M and V) A3305_RS00605 PF00364 Biotin-requiring enzyme A3305_RS00605 PF18140 Propionyl-coenzyme A carboxylase BT domain A3305_RS00605 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain A3305_RS00605 PF00289 Biotin carboxylase, N-terminal domain A3305_RS00605 PF02785 Biotin carboxylase C-terminal domain A3305_RS00610 PF01039 Carboxyl transferase domain A3305_RS00615 PF01553 Acyltransferase A3305_RS00615 PF00501 AMP-binding enzyme A3305_RS00625 PF00950 ABC 3 transport family A3305_RS00640 PF00749 tRNA synthetases class I (E and Q), catalytic domain A3305_RS00665 PF04607 Region found in RelA / SpoT proteins A3305_RS00665 PF13291 ACT domain A3305_RS00665 PF02824 TGS domain A3305_RS00675 PF00118 TCP-1/cpn60 chaperonin family A3305_RS00680 PF00166 Chaperonin 10 Kd subunit A3305_RS00720 PF03725 3' exoribonuclease family, domain 2 A3305_RS00720 PF01138 3' exoribonuclease family, domain 1 A3305_RS00725 PF01025 GrpE A3305_RS00730 PF01594 AI-2E family transporter A3305_RS00770 PF01649 Ribosomal protein S20 A3305_RS00775 PF01196 Ribosomal protein L17 A3305_RS00780 PF01000 RNA polymerase Rpb3/RpoA insert domain A3305_RS00780 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain A3305_RS00780 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain A3305_RS00785 PF00411 Ribosomal protein S11 A3305_RS00790 PF00416 Ribosomal protein S13/S18 A3305_RS00795 PF05191 Adenylate kinase, active site lid A3305_RS00800 PF00344 SecY translocase A3305_RS00805 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A A3305_RS00810 PF00327 Ribosomal protein L30p/L7e A3305_RS00815 PF00333 Ribosomal protein S5, N-terminal domain A3305_RS00815 PF03719 Ribosomal protein S5, C-terminal domain A3305_RS00820 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast A3305_RS00825 PF00347 Ribosomal protein L6 A3305_RS00830 PF00410 Ribosomal protein S8 A3305_RS00835 PF00253 Ribosomal protein S14p/S29e A3305_RS00840 PF00281 Ribosomal protein L5 A3305_RS00840 PF00673 ribosomal L5P family C-terminus A3305_RS00845 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 A3305_RS00845 PF00467 KOW motif A3305_RS00850 PF00238 Ribosomal protein L14p/L23e A3305_RS00855 PF00366 Ribosomal protein S17 A3305_RS00860 PF00831 Ribosomal L29 protein A3305_RS00865 PF00252 Ribosomal protein L16p/L10e A3305_RS00870 PF00189 Ribosomal protein S3, C-terminal domain A3305_RS00870 PF07650 KH domain A3305_RS00875 PF00237 Ribosomal protein L22p/L17e A3305_RS00880 PF00203 Ribosomal protein S19 A3305_RS00885 PF00181 Ribosomal Proteins L2, RNA binding domain A3305_RS00885 PF03947 Ribosomal Proteins L2, C-terminal domain A3305_RS00890 PF00276 Ribosomal protein L23 A3305_RS00895 PF00573 Ribosomal protein L4/L1 family A3305_RS00900 PF00297 Ribosomal protein L3 A3305_RS00905 PF00338 Ribosomal protein S10p/S20e A3305_RS00910 PF03144 Elongation factor Tu domain 2 A3305_RS00910 PF00009 Elongation factor Tu GTP binding domain A3305_RS00910 PF03143 Elongation factor Tu C-terminal domain A3305_RS00925 PF08032 RNA 2'-O ribose methyltransferase substrate binding A3305_RS00925 PF00588 SpoU rRNA Methylase family A3305_RS00935 PF00206 Lyase A3305_RS00935 PF10415 Fumarase C C-terminus A3305_RS00950 PF12327 FtsZ family, C-terminal domain A3305_RS00950 PF00091 Tubulin/FtsZ family, GTPase domain A3305_RS00965 PF03974 Ecotin A3305_RS00975 PF01106 NifU-like domain A3305_RS00985 PF07690 Major Facilitator Superfamily A3305_RS00990 PF00271 Helicase conserved C-terminal domain A3305_RS00990 PF00270 DEAD/DEAH box helicase A3305_RS00995 PF00313 'Cold-shock' DNA-binding domain A3305_RS01020 PF00398 Ribosomal RNA adenine dimethylase A3305_RS01030 PF04453 LPS transport system D A3305_RS01030 PF03968 OstA-like protein A3305_RS01040 PF13742 OB-fold nucleic acid binding domain A3305_RS01040 PF02601 Exonuclease VII, large subunit A3305_RS01060 PF03372 Endonuclease/Exonuclease/phosphatase family A3305_RS01070 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal A3305_RS01070 PF01926 50S ribosome-binding GTPase A3305_RS01105 PF03109 ABC1 family A3305_RS01115 PF01209 ubiE/COQ5 methyltransferase family A3305_RS01120 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain A3305_RS01120 PF06827 Zinc finger found in FPG and IleRS A3305_RS01120 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain A3305_RS01125 PF03330 Lytic transglycolase A3305_RS01155 PF01026 TatD related DNase A3305_RS01160 PF08264 Anticodon-binding domain of tRNA A3305_RS01160 PF09334 tRNA synthetases class I (M) A3305_RS01165 PF02223 Thymidylate kinase A3305_RS01175 PF07690 Major Facilitator Superfamily A3305_RS01180 PF01040 UbiA prenyltransferase family A3305_RS01190 PF00133 tRNA synthetases class I (I, L, M and V) A3305_RS01190 PF08264 Anticodon-binding domain of tRNA A3305_RS01195 PF04991 LicD family A3305_RS01200 PF04991 LicD family A3305_RS01210 PF02646 RmuC family A3305_RS01240 PF07724 AAA domain (Cdc48 subfamily) A3305_RS01240 PF06689 ClpX C4-type zinc finger A3305_RS01240 PF10431 C-terminal, D2-small domain, of ClpB protein A3305_RS01250 PF06508 Queuosine biosynthesis protein QueC A3305_RS01270 PF00664 ABC transporter transmembrane region A3305_RS01270 PF00005 ABC transporter A3305_RS01275 PF10880 Protein of unknown function (DUF2673) A3305_RS01280 PF07690 Major Facilitator Superfamily A3305_RS01290 PF12704 MacB-like periplasmic core domain A3305_RS01290 PF02687 FtsX-like permease family A3305_RS01295 PF00005 ABC transporter A3305_RS01305 PF01595 Cyclin M transmembrane N-terminal domain A3305_RS01305 PF03471 Transporter associated domain A3305_RS01305 PF00571 CBS domain A3305_RS01310 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal A3305_RS01310 PF01578 Cytochrome C assembly protein A3305_RS01325 PF12334 Rickettsia outer membrane protein B A3305_RS01325 PF03797 Autotransporter beta-domain A3305_RS01330 PF02824 TGS domain A3305_RS01330 PF04607 Region found in RelA / SpoT proteins A3305_RS01330 PF13291 ACT domain A3305_RS01335 PF00933 Glycosyl hydrolase family 3 N terminal domain A3305_RS01345 PF00216 Bacterial DNA-binding protein A3305_RS01360 PF00578 AhpC/TSA family A3305_RS01370 PF02606 Tetraacyldisaccharide-1-P 4'-kinase A3305_RS01375 PF01476 LysM domain A3305_RS01375 PF08525 Opacity-associated protein A N-terminal motif A3305_RS01375 PF01551 Peptidase family M23 A3305_RS01385 PF00533 BRCA1 C Terminus (BRCT) domain A3305_RS01385 PF01653 NAD-dependent DNA ligase adenylation domain A3305_RS01385 PF12826 Helix-hairpin-helix motif A3305_RS01385 PF03120 NAD-dependent DNA ligase OB-fold domain A3305_RS01395 PF01702 Queuine tRNA-ribosyltransferase A3305_RS01435 PF05071 NADH ubiquinone oxidoreductase subunit NDUFA12 A3305_RS01440 PF00075 RNase H A3305_RS01460 PF01121 Dephospho-CoA kinase A3305_RS01465 PF00929 Exonuclease A3305_RS01470 PF02104 SURF1 family A3305_RS01475 PF13361 UvrD-like helicase C-terminal domain A3305_RS01475 PF00580 UvrD/REP helicase N-terminal domain A3305_RS01485 PF00698 Acyl transferase domain A3305_RS01600 PF02803 Thiolase, C-terminal domain A3305_RS01600 PF00108 Thiolase, N-terminal domain A3305_RS01615 PF03219 TLC ATP/ADP transporter A3305_RS01635 PF03471 Transporter associated domain A3305_RS01635 PF00571 CBS domain A3305_RS01640 PF02130 Uncharacterized protein family UPF0054 A3305_RS01650 PF04055 Radical SAM superfamily A3305_RS01650 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family A3305_RS01655 PF00464 Serine hydroxymethyltransferase A3305_RS01660 PF02230 Phospholipase/Carboxylesterase A3305_RS01665 PF00462 Glutaredoxin A3305_RS01670 PF10576 Iron-sulfur binding domain of endonuclease III A3305_RS01670 PF00730 HhH-GPD superfamily base excision DNA repair protein A3305_RS01670 PF00633 Helix-hairpin-helix motif A3305_RS01700 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases A3305_RS01705 PF13458 Periplasmic binding protein A3305_RS01710 PF02416 mttA/Hcf106 family A3305_RS01715 PF04608 Phosphatidylglycerophosphatase A A3305_RS01720 PF00829 Ribosomal prokaryotic L21 protein A3305_RS01725 PF01016 Ribosomal L27 protein A3305_RS01730 PF00696 Amino acid kinase family A3305_RS01760 PF00083 Sugar (and other) transporter A3305_RS01760 PF07690 Major Facilitator Superfamily A3305_RS01770 PF05164 Cell division protein ZapA A3305_RS01775 PF00133 tRNA synthetases class I (I, L, M and V) A3305_RS01775 PF13603 Leucyl-tRNA synthetase, Domain 2 A3305_RS01775 PF08264 Anticodon-binding domain of tRNA A3305_RS01780 PF13464 Domain of unknown function (DUF4115) A3305_RS01785 PF05088 Bacterial NAD-glutamate dehydrogenase A3305_RS01790 PF12631 MnmE helical domain A3305_RS01790 PF01926 50S ribosome-binding GTPase A3305_RS01790 PF10396 GTP-binding protein TrmE N-terminus A3305_RS01795 PF17544 Family of unknown function (DUF5460) A3305_RS01830 PF00154 recA bacterial DNA recombination protein A3305_RS01845 PF00550 Phosphopantetheine attachment site A3305_RS01850 PF02801 Beta-ketoacyl synthase, C-terminal domain A3305_RS01850 PF00109 Beta-ketoacyl synthase, N-terminal domain A3305_RS01855 PF00005 ABC transporter A3305_RS01855 PF16326 ABC transporter C-terminal domain A3305_RS01855 PF12848 ABC transporter A3305_RS01870 PF13173 AAA domain A3305_RS01870 PF13635 Domain of unknown function (DUF4143) A3305_RS01875 PF00625 Guanylate kinase A3305_RS01880 PF00012 Hsp70 protein A3305_RS01885 PF01381 Helix-turn-helix A3305_RS01915 PF00691 OmpA family A3305_RS01925 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III A3305_RS01925 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal A3305_RS01930 PF01783 Ribosomal L32p protein family A3305_RS01940 PF02881 SRP54-type protein, helical bundle domain A3305_RS01940 PF00448 SRP54-type protein, GTPase domain A3305_RS01945 PF00476 DNA polymerase family A A3305_RS01945 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain A3305_RS01945 PF01367 5'-3' exonuclease, C-terminal SAM fold A3305_RS01955 PF02773 S-adenosylmethionine synthetase, C-terminal domain A3305_RS01955 PF00438 S-adenosylmethionine synthetase, N-terminal domain A3305_RS01955 PF02772 S-adenosylmethionine synthetase, central domain A3305_RS01995 PF02811 PHP domain A3305_RS01995 PF14579 Helix-hairpin-helix motif A3305_RS01995 PF07733 Bacterial DNA polymerase III alpha NTPase domain A3305_RS01995 PF17657 Bacterial DNA polymerase III alpha subunit finger domain A3305_RS02000 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain A3305_RS02000 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain A3305_RS02000 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain A3305_RS02015 PF07690 Major Facilitator Superfamily A3305_RS02020 PF00902 Sec-independent protein translocase protein (TatC) A3305_RS02025 PF02403 Seryl-tRNA synthetase N-terminal domain A3305_RS02025 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) A3305_RS02030 PF17827 PrmC N-terminal domain A3305_RS02030 PF05175 Methyltransferase small domain A3305_RS02030 PF02390 Putative methyltransferase A3305_RS02035 PF05175 Methyltransferase small domain A3305_RS02035 PF02390 Putative methyltransferase A3305_RS02035 PF17827 PrmC N-terminal domain A3305_RS02040 PF03135 CagE, TrbE, VirB family, component of type IV transporter system A3305_RS02050 PF03741 Integral membrane protein TerC family A3305_RS02060 PF10119 Predicted methyltransferase regulatory domain A3305_RS02060 PF13847 Methyltransferase domain A3305_RS02070 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 A3305_RS02075 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L A3305_RS02080 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus A3305_RS02080 PF00361 Proton-conducting membrane transporter A3305_RS02085 PF00361 Proton-conducting membrane transporter A3305_RS02090 PF00005 ABC transporter A3305_RS02095 PF12838 4Fe-4S dicluster domain A3305_RS02100 PF00146 NADH dehydrogenase A3305_RS02105 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region A3305_RS02105 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal A3305_RS02105 PF00384 Molybdopterin oxidoreductase A3305_RS02115 PF00694 Aconitase C-terminal domain A3305_RS02115 PF00330 Aconitase family (aconitate hydratase) A3305_RS02120 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain A3305_RS02125 PF02874 ATP synthase alpha/beta family, beta-barrel domain A3305_RS02125 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain A3305_RS02130 PF00231 ATP synthase A3305_RS02135 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain A3305_RS02135 PF00306 ATP synthase alpha/beta chain, C terminal domain A3305_RS02135 PF02874 ATP synthase alpha/beta family, beta-barrel domain A3305_RS02140 PF00213 ATP synthase delta (OSCP) subunit A3305_RS02145 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain A3305_RS02145 PF07992 Pyridine nucleotide-disulphide oxidoreductase A3305_RS02170 PF17092 Penicillin-binding protein OB-like domain A3305_RS02170 PF00905 Penicillin binding protein transpeptidase domain A3305_RS02170 PF00912 Transglycosylase A3305_RS02175 PF01938 TRAM domain A3305_RS02175 PF04055 Radical SAM superfamily A3305_RS02175 PF00919 Uncharacterized protein family UPF0004 A3305_RS02200 PF08264 Anticodon-binding domain of tRNA A3305_RS02200 PF00133 tRNA synthetases class I (I, L, M and V) A3305_RS02210 PF02254 TrkA-N domain A3305_RS02210 PF00999 Sodium/hydrogen exchanger family A3305_RS02220 PF01722 BolA-like protein A3305_RS02285 PF01176 Translation initiation factor 1A / IF-1 A3305_RS02290 PF02545 Maf-like protein A3305_RS02295 PF01258 Prokaryotic dksA/traR C4-type zinc finger A3305_RS02300 PF02899 Phage integrase, N-terminal SAM-like domain A3305_RS02300 PF00589 Phage integrase family A3305_RS02325 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase A3305_RS02335 PF03797 Autotransporter beta-domain A3305_RS02340 PF01580 FtsK/SpoIIIE family A3305_RS02340 PF09397 Ftsk gamma domain A3305_RS02340 PF17854 FtsK alpha domain A3305_RS02340 PF13491 4TM region of DNA translocase FtsK/SpoIIIE A3305_RS02350 PF00557 Metallopeptidase family M24 A3305_RS02360 PF04002 RadC-like JAB domain A3305_RS02370 PF00953 Glycosyl transferase family 4 A3305_RS02375 PF05258 Dna[CI] antecedent, DciA A3305_RS02380 PF13505 Outer membrane protein beta-barrel domain A3305_RS02390 PF13505 Outer membrane protein beta-barrel domain A3305_RS02395 PF11953 Domain of unknown function (DUF3470) A3305_RS02395 PF12838 4Fe-4S dicluster domain A3305_RS02400 PF01578 Cytochrome C assembly protein A3305_RS02405 PF16916 Dimerisation domain of Zinc Transporter A3305_RS02405 PF01545 Cation efflux family A3305_RS02410 PF16998 17 kDa outer membrane surface antigen A3305_RS02410 PF05433 Glycine zipper 2TM domain A3305_RS02425 PF00005 ABC transporter A3305_RS02445 PF17760 UvrA interaction domain A3305_RS02445 PF17755 UvrA DNA-binding domain A3305_RS02450 PF00436 Single-strand binding protein family A3305_RS02480 PF02594 Uncharacterised ACR, YggU family COG1872 A3305_RS02485 PF00183 Hsp90 protein A3305_RS02490 PF00155 Aminotransferase class I and II A3305_RS02495 PF01168 Alanine racemase, N-terminal domain A3305_RS02495 PF00842 Alanine racemase, C-terminal domain A3305_RS02515 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase A3305_RS02515 PF05697 Bacterial trigger factor protein (TF) A3305_RS02515 PF05698 Bacterial trigger factor protein (TF) C-terminus A3305_RS02520 PF01926 50S ribosome-binding GTPase A3305_RS02520 PF01018 GTP1/OBG A3305_RS02525 PF00285 Citrate synthase, C-terminal domain A3305_RS02530 PF03167 Uracil DNA glycosylase superfamily A3305_RS02535 PF00849 RNA pseudouridylate synthase A3305_RS02535 PF01479 S4 domain A3305_RS02575 PF01300 Telomere recombination A3305_RS02575 PF03481 Putative GTP-binding controlling metal-binding A3305_RS02580 PF05746 DALR anticodon binding domain A3305_RS02580 PF02092 Glycyl-tRNA synthetase beta subunit A3305_RS02585 PF02091 Glycyl-tRNA synthetase alpha subunit A3305_RS02590 PF01850 PIN domain A3305_RS02600 PF02677 Epoxyqueuosine reductase QueH A3305_RS02605 PF08946 Osmosensory transporter coiled coil A3305_RS02605 PF00083 Sugar (and other) transporter A3305_RS02610 PF17542 Uncharacterized RP853 A3305_RS02615 PF17460 Uncharacterized protein RP854 A3305_RS02625 PF02272 DHHA1 domain A3305_RS02625 PF01411 tRNA synthetases class II (A) A3305_RS02625 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain A3305_RS02630 PF01416 tRNA pseudouridine synthase A3305_RS02635 PF04539 Sigma-70 region 3 A3305_RS02635 PF04545 Sigma-70, region 4 A3305_RS02635 PF04542 Sigma-70 region 2 A3305_RS02635 PF00140 Sigma-70 factor, region 1.2 A3305_RS02635 PF03979 Sigma-70 factor, region 1.1 A3305_RS02635 PF04546 Sigma-70, non-essential region A3305_RS02640 PF13662 Toprim domain A3305_RS02640 PF01807 CHC2 zinc finger A3305_RS02640 PF08275 DNA primase catalytic core, N-terminal domain A3305_RS02650 PF03449 Transcription elongation factor, N-terminal A3305_RS02650 PF01272 Transcription elongation factor, GreA/GreB, C-term A3305_RS02655 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch A3305_RS02660 PF05222 Alanine dehydrogenase/PNT, N-terminal domain A3305_RS02660 PF01262 Alanine dehydrogenase/PNT, C-terminal domain A3305_RS02665 PF03548 Outer membrane lipoprotein carrier protein LolA A3305_RS02675 PF12169 DNA polymerase III subunits gamma and tau domain III A3305_RS02680 PF02575 YbaB/EbfC DNA-binding family A3305_RS02730 PF00005 ABC transporter A3305_RS02745 PF04221 RelB antitoxin A3305_RS02760 PF03739 Lipopolysaccharide export system permease LptF/LptG A3305_RS02765 PF04364 DNA polymerase III chi subunit, HolC A3305_RS02775 PF07687 Peptidase dimerisation domain A3305_RS02775 PF01546 Peptidase family M20/M25/M40 A3305_RS02820 PF03099 Biotin/lipoate A/B protein ligase family A3305_RS02825 PF01510 N-acetylmuramoyl-L-alanine amidase A3305_RS02835 PF00886 Ribosomal protein S16 A3305_RS02840 PF00471 Ribosomal protein L33 A3305_RS02845 PF01119 DNA mismatch repair protein, C-terminal domain A3305_RS02845 PF08676 MutL C terminal dimerisation domain A3305_RS02855 PF00106 short chain dehydrogenase A3305_RS02880 PF08946 Osmosensory transporter coiled coil A3305_RS02880 PF00083 Sugar (and other) transporter A3305_RS02885 PF01218 Coproporphyrinogen III oxidase A3305_RS02905 PF03653 Uncharacterised protein family (UPF0093) A3305_RS02910 PF00762 Ferrochelatase A3305_RS02915 PF01208 Uroporphyrinogen decarboxylase (URO-D) A3305_RS02920 PF03618 Kinase/pyrophosphorylase A3305_RS02925 PF00085 Thioredoxin A3305_RS02930 PF00005 ABC transporter A3305_RS02930 PF14524 Wzt C-terminal domain A3305_RS02935 PF01061 ABC-2 type transporter A3305_RS02940 PF07992 Pyridine nucleotide-disulphide oxidoreductase A3305_RS02955 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 A3305_RS02955 PF00132 Bacterial transferase hexapeptide (six repeats) A3305_RS02960 PF07977 FabA-like domain A3305_RS02965 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD A3305_RS02965 PF00132 Bacterial transferase hexapeptide (six repeats) A3305_RS03020 PF10871 Protein of unknown function (DUF2748) A3305_RS03045 PF02622 Uncharacterized ACR, COG1678 A3305_RS03075 PF17372 Family of unknown function (DUF5394) A3305_RS03080 PF02152 Dihydroneopterin aldolase A3305_RS03085 PF00809 Pterin binding enzyme A3305_RS03085 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) A3305_RS03100 PF03070 TENA/THI-4/PQQC family A3305_RS03110 PF02463 RecF/RecN/SMC N terminal domain A3305_RS03115 PF10119 Predicted methyltransferase regulatory domain A3305_RS03115 PF13847 Methyltransferase domain A3305_RS03130 PF13462 Thioredoxin A3305_RS03135 PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter A3305_RS03140 PF00119 ATP synthase A chain A3305_RS03145 PF13603 Leucyl-tRNA synthetase, Domain 2 A3305_RS03145 PF00133 tRNA synthetases class I (I, L, M and V) A3305_RS03145 PF08264 Anticodon-binding domain of tRNA A3305_RS03150 PF00137 ATP synthase subunit C A3305_RS03155 PF00430 ATP synthase B/B' CF(0) A3305_RS03160 PF00430 ATP synthase B/B' CF(0) A3305_RS03210 PF03797 Autotransporter beta-domain A3305_RS03225 PF12627 Probable RNA and SrmB- binding site of polymerase A A3305_RS03225 PF12626 Polymerase A arginine-rich C-terminus A3305_RS03225 PF01743 Poly A polymerase head domain A3305_RS03230 PF01297 Zinc-uptake complex component A periplasmic A3305_RS03235 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE A3305_RS03245 PF01207 Dihydrouridine synthase (Dus) A3305_RS03250 PF02390 Putative methyltransferase A3305_RS03250 PF05175 Methyltransferase small domain A3305_RS03250 PF17827 PrmC N-terminal domain A3305_RS03315 PF10431 C-terminal, D2-small domain, of ClpB protein A3305_RS03315 PF07724 AAA domain (Cdc48 subfamily) A3305_RS03315 PF00004 ATPase family associated with various cellular activities (AAA) A3305_RS03315 PF17871 AAA lid domain A3305_RS03315 PF02861 Clp amino terminal domain, pathogenicity island component A3305_RS03320 PF17462 Family of unknown function (DUF5424) A3305_RS03325 PF00814 Glycoprotease family A3305_RS03345 PF01250 Ribosomal protein S6 A3305_RS03350 PF01084 Ribosomal protein S18 A3305_RS03355 PF01281 Ribosomal protein L9, N-terminal domain A3305_RS03355 PF03948 Ribosomal protein L9, C-terminal domain A3305_RS03360 PF01171 PP-loop family A3305_RS03365 PF17862 AAA+ lid domain A3305_RS03365 PF06480 FtsH Extracellular A3305_RS03365 PF01434 Peptidase family M41 A3305_RS03365 PF00004 ATPase family associated with various cellular activities (AAA) A3305_RS03375 PF13085 2Fe-2S iron-sulfur cluster binding domain A3305_RS03385 PF01509 TruB family pseudouridylate synthase (N terminal domain) A3305_RS03385 PF16198 tRNA pseudouridylate synthase B C-terminal domain A3305_RS03390 PF01790 Prolipoprotein diacylglyceryl transferase A3305_RS03400 PF00924 Mechanosensitive ion channel A3305_RS03405 PF14849 YidC periplasmic domain A3305_RS03405 PF02096 60Kd inner membrane protein A3305_RS03410 PF01066 CDP-alcohol phosphatidyltransferase A3305_RS03440 PF09992 Phosphodiester glycosidase A3305_RS03450 PF03219 TLC ATP/ADP transporter A3305_RS03455 PF07690 Major Facilitator Superfamily A3305_RS03460 PF00334 Nucleoside diphosphate kinase A3305_RS03465 PF13932 GidA associated domain A3305_RS03465 PF01134 Glucose inhibited division protein A A3305_RS03470 PF02527 rRNA small subunit methyltransferase G A3305_RS03475 PF13614 AAA domain A3305_RS03480 PF02195 ParB-like nuclease domain A3305_RS03480 PF17762 HTH domain found in ParB protein A3305_RS03485 PF00005 ABC transporter A3305_RS03485 PF12848 ABC transporter A3305_RS03490 PF10878 Protein of unknown function (DUF2672) A3305_RS03495 PF00793 DAHP synthetase I family A3305_RS03510 PF01521 Iron-sulphur cluster biosynthesis A3305_RS03515 PF01966 HD domain A3305_RS03515 PF13286 Phosphohydrolase-associated domain A3305_RS03520 PF08264 Anticodon-binding domain of tRNA A3305_RS03520 PF13603 Leucyl-tRNA synthetase, Domain 2 A3305_RS03520 PF00133 tRNA synthetases class I (I, L, M and V) A3305_RS03525 PF00750 tRNA synthetases class I (R) A3305_RS03525 PF05746 DALR anticodon binding domain A3305_RS03525 PF03485 Arginyl tRNA synthetase N terminal domain A3305_RS03530 PF05036 Sporulation related domain A3305_RS03535 PF03989 DNA gyrase C-terminal domain, beta-propeller A3305_RS03535 PF00521 DNA gyrase/topoisomerase IV, subunit A A3305_RS03545 PF04610 TrbL/VirB6 plasmid conjugal transfer protein A3305_RS03550 PF04610 TrbL/VirB6 plasmid conjugal transfer protein A3305_RS03555 PF04610 TrbL/VirB6 plasmid conjugal transfer protein A3305_RS03560 PF04610 TrbL/VirB6 plasmid conjugal transfer protein A3305_RS03565 PF04610 TrbL/VirB6 plasmid conjugal transfer protein A3305_RS03570 PF03135 CagE, TrbE, VirB family, component of type IV transporter system A3305_RS03585 PF01926 50S ribosome-binding GTPase A3305_RS03595 PF01197 Ribosomal protein L31 A3305_RS03600 PF00830 Ribosomal L28 family A3305_RS03630 PF00005 ABC transporter A3305_RS03635 PF02405 Permease MlaE A3305_RS03640 PF00842 Alanine racemase, C-terminal domain A3305_RS03640 PF01168 Alanine racemase, N-terminal domain A3305_RS03645 PF14572 Phosphoribosyl synthetase-associated domain A3305_RS03645 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase A3305_RS03660 PF04333 MlaA lipoprotein A3305_RS03670 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system A3305_RS03675 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system A3305_RS03680 PF00155 Aminotransferase class I and II A3305_RS03685 PF04028 Domain of unknown function (DUF374) A3305_RS03690 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) A3305_RS03705 PF00889 Elongation factor TS A3305_RS03710 PF00318 Ribosomal protein S2 A3305_RS03715 PF01406 tRNA synthetases class I (C) catalytic domain A3305_RS03715 PF09190 DALR domain A3305_RS03720 PF03797 Autotransporter beta-domain A3305_RS03730 PF03840 Preprotein translocase SecG subunit A3305_RS03745 PF07690 Major Facilitator Superfamily A3305_RS03750 PF00892 EamA-like transporter family A3305_RS03755 PF03922 OmpW family A3305_RS03760 PF02233 NAD(P) transhydrogenase beta subunit A3305_RS03770 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term A3305_RS03770 PF14489 QueF-like protein A3305_RS03775 PF00072 Response regulator receiver domain A3305_RS03775 PF00486 Transcriptional regulatory protein, C terminal A3305_RS03780 PF02556 Preprotein translocase subunit SecB A3305_RS03785 PF00692 dUTPase A3305_RS03790 PF13609 Gram-negative porin A3305_RS03795 PF01746 tRNA (Guanine-1)-methyltransferase A3305_RS03800 PF01245 Ribosomal protein L19 A3305_RS03810 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) A3305_RS03815 PF07549 SecD/SecF GG Motif A3305_RS03815 PF02355 Protein export membrane protein A3305_RS03820 PF10531 SLBB domain A3305_RS03820 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region A3305_RS03820 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit A3305_RS03825 PF10502 Signal peptidase, peptidase S26 A3305_RS03830 PF14622 Ribonuclease-III-like A3305_RS03830 PF00035 Double-stranded RNA binding motif A3305_RS03835 PF01926 50S ribosome-binding GTPase A3305_RS03835 PF07650 KH domain A3305_RS03840 PF02075 Crossover junction endodeoxyribonuclease RuvC A3305_RS03845 PF00588 SpoU rRNA Methylase family A3305_RS03860 PF06258 Mitochondrial fission ELM1 A3305_RS03865 PF10609 NUBPL iron-transfer P-loop NTPase A3305_RS03870 PF12221 Bacterial membrane protein N terminal A3305_RS03870 PF01145 SPFH domain / Band 7 family A3305_RS03875 PF01145 SPFH domain / Band 7 family A3305_RS03880 PF13180 PDZ domain A3305_RS03885 PF13180 PDZ domain A3305_RS03890 PF00581 Rhodanese-like domain A3305_RS03890 PF17773 UPF0176 acylphosphatase like domain A3305_RS03895 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit A3305_RS03900 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit A3305_RS03910 PF00890 FAD binding domain A3305_RS03910 PF02910 Fumarate reductase flavoprotein C-term A3305_RS03915 PF00528 Binding-protein-dependent transport system inner membrane component A3305_RS03920 PF00164 Ribosomal protein S12/S23 A3305_RS03925 PF00177 Ribosomal protein S7p/S5e A3305_RS03930 PF00009 Elongation factor Tu GTP binding domain A3305_RS03930 PF03764 Elongation factor G, domain IV A3305_RS03930 PF14492 Elongation Factor G, domain II A3305_RS03930 PF00679 Elongation factor G C-terminus A3305_RS03930 PF03144 Elongation factor Tu domain 2 A3305_RS03940 PF00584 SecE/Sec61-gamma subunits of protein translocation complex A3305_RS03945 PF00467 KOW motif A3305_RS03945 PF02357 Transcription termination factor nusG A3305_RS03950 PF03946 Ribosomal protein L11, N-terminal domain A3305_RS03950 PF00298 Ribosomal protein L11, RNA binding domain A3305_RS03955 PF00687 Ribosomal protein L1p/L10e family A3305_RS03960 PF00466 Ribosomal protein L10 A3305_RS03965 PF16320 Ribosomal protein L7/L12 dimerisation domain A3305_RS03965 PF00542 Ribosomal protein L7/L12 C-terminal domain A3305_RS03970 PF04563 RNA polymerase beta subunit A3305_RS03970 PF10385 RNA polymerase beta subunit external 1 domain A3305_RS03970 PF04560 RNA polymerase Rpb2, domain 7 A3305_RS03970 PF04565 RNA polymerase Rpb2, domain 3 A3305_RS03970 PF04561 RNA polymerase Rpb2, domain 2 A3305_RS03970 PF00562 RNA polymerase Rpb2, domain 6 A3305_RS03975 PF04997 RNA polymerase Rpb1, domain 1 A3305_RS03975 PF04983 RNA polymerase Rpb1, domain 3 A3305_RS03975 PF04998 RNA polymerase Rpb1, domain 5 A3305_RS03975 PF00623 RNA polymerase Rpb1, domain 2 A3305_RS03975 PF05000 RNA polymerase Rpb1, domain 4 A3305_RS03980 PF17827 PrmC N-terminal domain A3305_RS03980 PF05175 Methyltransferase small domain A3305_RS03980 PF02390 Putative methyltransferase A3305_RS03985 PF02779 Transketolase, pyrimidine binding domain A3305_RS03985 PF16078 2-oxoglutarate dehydrogenase N-terminus A3305_RS03985 PF00676 Dehydrogenase E1 component A3305_RS03985 PF16870 2-oxoglutarate dehydrogenase C-terminal A3305_RS03990 PF00883 Cytosol aminopeptidase family, catalytic domain A3305_RS03990 PF02789 Cytosol aminopeptidase family, N-terminal domain A3305_RS04000 PF11304 Protein of unknown function (DUF3106) A3305_RS04005 PF02938 GAD domain A3305_RS04005 PF00152 tRNA synthetases class II (D, K and N) A3305_RS04005 PF01336 OB-fold nucleic acid binding domain A3305_RS04015 PF01027 Inhibitor of apoptosis-promoting Bax1 A3305_RS04020 PF01113 Dihydrodipicolinate reductase, N-terminus A3305_RS04020 PF05173 Dihydrodipicolinate reductase, C-terminus A3305_RS04025 PF01613 Flavin reductase like domain A3305_RS04030 PF00497 Bacterial extracellular solute-binding proteins, family 3 A3305_RS04035 PF02637 GatB domain A3305_RS04035 PF02934 GatB/GatE catalytic domain A3305_RS04040 PF01425 Amidase A3305_RS04045 PF02686 Glu-tRNAGln amidotransferase C subunit A3305_RS04050 PF01765 Ribosome recycling factor A3305_RS04055 PF00696 Amino acid kinase family A3305_RS04065 PF07690 Major Facilitator Superfamily A3305_RS04070 PF10879 Protein of unknown function (DUF2674) A3305_RS04095 PF01103 Surface antigen A3305_RS04095 PF07244 Surface antigen variable number repeat A3305_RS04100 PF02163 Peptidase family M50 A3305_RS04100 PF17820 PDZ domain A3305_RS04105 PF01029 NusB family A3305_RS04110 PF01728 FtsJ-like methyltransferase A3305_RS04125 PF03364 Polyketide cyclase / dehydrase and lipid transport A3305_RS04130 PF07896 Protein of unknown function (DUF1674) A3305_RS04135 PF04452 RNA methyltransferase A3305_RS04140 PF04070 Domain of unknown function (DUF378) A3305_RS04145 PF00873 AcrB/AcrD/AcrF family A3305_RS04150 PF00216 Bacterial DNA-binding protein A3305_RS04155 PF09115 DNA polymerase III, delta subunit, C terminal A3305_RS04160 PF02978 Signal peptide binding domain A3305_RS04160 PF02881 SRP54-type protein, helical bundle domain A3305_RS04160 PF00448 SRP54-type protein, GTPase domain A3305_RS04170 PF00326 Prolyl oligopeptidase family A3305_RS04170 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain A3305_RS04180 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain A3305_RS04180 PF00326 Prolyl oligopeptidase family A3305_RS04185 PF00326 Prolyl oligopeptidase family A3305_RS04185 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain A3305_RS04190 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain A3305_RS04190 PF00326 Prolyl oligopeptidase family A3305_RS04195 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain A3305_RS04195 PF00326 Prolyl oligopeptidase family A3305_RS04200 PF04055 Radical SAM superfamily A3305_RS04200 PF06969 HemN C-terminal domain A3305_RS04205 PF12796 Ankyrin repeats (3 copies) A3305_RS04215 PF12796 Ankyrin repeats (3 copies) A3305_RS04250 PF00375 Sodium:dicarboxylate symporter family A3305_RS04260 PF01242 6-pyruvoyl tetrahydropterin synthase A3305_RS04265 PF02817 e3 binding domain A3305_RS04265 PF00364 Biotin-requiring enzyme A3305_RS04265 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) A3305_RS04275 PF16078 2-oxoglutarate dehydrogenase N-terminus A3305_RS04275 PF00676 Dehydrogenase E1 component A3305_RS04275 PF16870 2-oxoglutarate dehydrogenase C-terminal A3305_RS04275 PF02779 Transketolase, pyrimidine binding domain A3305_RS04280 PF02074 Carboxypeptidase Taq (M32) metallopeptidase A3305_RS04285 PF02463 RecF/RecN/SMC N terminal domain A3305_RS04290 PF13525 Outer membrane lipoprotein A3305_RS04295 PF01509 TruB family pseudouridylate synthase (N terminal domain) A3305_RS04295 PF16198 tRNA pseudouridylate synthase B C-terminal domain A3305_RS04300 PF06150 ChaB A3305_RS04305 PF00226 DnaJ domain A3305_RS04305 PF01556 DnaJ C terminal domain A3305_RS04305 PF00684 DnaJ central domain A3305_RS04310 PF00012 Hsp70 protein A3305_RS04345 PF00510 Cytochrome c oxidase subunit III A3305_RS04350 PF04956 TrbC/VIRB2 family A3305_RS04355 PF13717 zinc-ribbon domain A3305_RS04360 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal A3305_RS04360 PF14602 Hexapeptide repeat of succinyl-transferase A3305_RS04360 PF00132 Bacterial transferase hexapeptide (six repeats) A3305_RS04380 PF00912 Transglycosylase A3305_RS04380 PF06832 Penicillin-Binding Protein C-terminus Family A3305_RS04380 PF00905 Penicillin binding protein transpeptidase domain A3305_RS04420 PF03797 Autotransporter beta-domain A3305_RS04425 PF00582 Universal stress protein family A3305_RS04440 PF00111 2Fe-2S iron-sulfur cluster binding domain A3305_RS04445 PF00012 Hsp70 protein A3305_RS04450 PF00226 DnaJ domain A3305_RS04450 PF07743 HSCB C-terminal oligomerisation domain A3305_RS04455 PF01351 Ribonuclease HII A3305_RS04465 PF17757 UvrB interaction domain A3305_RS04465 PF12344 Ultra-violet resistance protein B A3305_RS04465 PF00271 Helicase conserved C-terminal domain A3305_RS04465 PF02151 UvrB/uvrC motif A3305_RS04465 PF04851 Type III restriction enzyme, res subunit A3305_RS04470 PF00462 Glutaredoxin A3305_RS04480 PF00664 ABC transporter transmembrane region A3305_RS04480 PF00005 ABC transporter A3305_RS04485 PF00521 DNA gyrase/topoisomerase IV, subunit A A3305_RS04485 PF03989 DNA gyrase C-terminal domain, beta-propeller A3305_RS04525 PF01327 Polypeptide deformylase A3305_RS04530 PF00551 Formyl transferase A3305_RS04530 PF02911 Formyl transferase, C-terminal domain A3305_RS04560 PF02547 Queuosine biosynthesis protein A3305_RS04575 PF00664 ABC transporter transmembrane region A3305_RS04575 PF00005 ABC transporter A3305_RS04580 PF10877 Protein of unknown function (DUF2671) A3305_RS04585 PF01654 Cytochrome bd terminal oxidase subunit I A3305_RS04590 PF02322 Cytochrome bd terminal oxidase subunit II A3305_RS04595 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system A3305_RS04605 PF00535 Glycosyl transferase family 2 A3305_RS04610 PF05193 Peptidase M16 inactive domain A3305_RS04610 PF00675 Insulinase (Peptidase family M16) A3305_RS04615 PF01259 SAICAR synthetase A3305_RS04625 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain A3305_RS04625 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) A3305_RS04625 PF02824 TGS domain A3305_RS04625 PF03129 Anticodon binding domain A3305_RS04640 PF10859 Protein of unknown function (DUF2660) A3305_RS04660 PF02321 Outer membrane efflux protein A3305_RS04665 PF10691 Protein of unknown function (DUF2497) A3305_RS04680 PF01751 Toprim domain A3305_RS04680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3305_RS04680 PF00204 DNA gyrase B A3305_RS04680 PF00986 DNA gyrase B subunit, carboxyl terminus A3305_RS04685 PF13180 PDZ domain A3305_RS04685 PF03572 Peptidase family S41 A3305_RS04690 PF00989 PAS fold A3305_RS04690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3305_RS04690 PF13188 PAS domain A3305_RS04690 PF00512 His Kinase A (phospho-acceptor) domain A3305_RS04700 PF10858 Protein of unknown function (DUF2659) A3305_RS04705 PF13360 PQQ-like domain A3305_RS04710 PF00572 Ribosomal protein L13 A3305_RS04715 PF00380 Ribosomal protein S9/S16 A3305_RS04740 PF01329 Pterin 4 alpha carbinolamine dehydratase A3305_RS04755 PF00293 NUDIX domain A3305_RS04760 PF00990 Diguanylate cyclase, GGDEF domain A3305_RS04760 PF00072 Response regulator receiver domain A3305_RS04765 PF01132 Elongation factor P (EF-P) OB domain A3305_RS04765 PF08207 Elongation factor P (EF-P) KOW-like domain A3305_RS04765 PF09285 Elongation factor P, C-terminal A3305_RS04770 PF00459 Inositol monophosphatase family A3305_RS04775 PF11020 Domain of unknown function (DUF2610) A3305_RS04780 PF02666 Phosphatidylserine decarboxylase A3305_RS04785 PF01066 CDP-alcohol phosphatidyltransferase A3305_RS04790 PF13533 Biotin-lipoyl like A3305_RS04825 PF01225 Mur ligase family, catalytic domain A3305_RS04825 PF08245 Mur ligase middle domain A3305_RS04825 PF02875 Mur ligase family, glutamate ligase domain A3305_RS04830 PF01565 FAD binding domain A3305_RS04830 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain A3305_RS04835 PF01820 D-ala D-ala ligase N-terminus A3305_RS04835 PF07478 D-ala D-ala ligase C-terminus A3305_RS04840 PF03799 Cell division protein FtsQ A3305_RS04840 PF08478 POTRA domain, FtsQ-type A3305_RS04850 PF01957 NfeD-like C-terminal, partner-binding A3305_RS04855 PF00034 Cytochrome c A3305_RS04865 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase A3305_RS04880 PF00575 S1 RNA binding domain A3305_RS04880 PF10150 Ribonuclease E/G family A3305_RS04890 PF02628 Cytochrome oxidase assembly protein A3305_RS04895 PF00849 RNA pseudouridylate synthase A3305_RS04895 PF01479 S4 domain A3305_RS04905 PF00144 Beta-lactamase A3305_RS04905 PF11954 Domain of unknown function (DUF3471) A3305_RS04915 PF03372 Endonuclease/Exonuclease/phosphatase family A3305_RS04920 PF00676 Dehydrogenase E1 component A3305_RS04925 PF02779 Transketolase, pyrimidine binding domain A3305_RS04925 PF02780 Transketolase, C-terminal domain A3305_RS04930 PF00009 Elongation factor Tu GTP binding domain A3305_RS04930 PF00679 Elongation factor G C-terminus A3305_RS04930 PF03144 Elongation factor Tu domain 2 A3305_RS04945 PF18324 Hypothetical protein TT1725 A3305_RS04945 PF00180 Isocitrate/isopropylmalate dehydrogenase A3305_RS04950 PF03334 Na+/H+ antiporter subunit A3305_RS04955 PF00361 Proton-conducting membrane transporter A3305_RS04955 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus A3305_RS04955 PF13244 Domain of unknown function (DUF4040) A3305_RS04960 PF03379 CcmB protein A3305_RS04965 PF10875 Protein of unknown function (DUF2670) A3305_RS04970 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal A3305_RS04970 PF00355 Rieske [2Fe-2S] domain A3305_RS04975 PF00033 Cytochrome b/b6/petB A3305_RS04975 PF00032 Cytochrome b(C-terminal)/b6/petD A3305_RS04985 PF02167 Cytochrome C1 family A3305_RS04995 PF00011 Hsp20/alpha crystallin family A3305_RS05005 PF17761 DUF1016 N-terminal domain A3305_RS05005 PF06250 YhcG PDDEXK nuclease domain A3305_RS05015 PF00472 RF-1 domain A3305_RS05015 PF03462 PCRF domain A3305_RS05020 PF06421 GTP-binding protein LepA C-terminus A3305_RS05020 PF00009 Elongation factor Tu GTP binding domain A3305_RS05020 PF00679 Elongation factor G C-terminus A3305_RS05020 PF03144 Elongation factor Tu domain 2 A3305_RS05045 PF03797 Autotransporter beta-domain A3305_RS05050 PF03797 Autotransporter beta-domain A3305_RS05120 PF01098 Cell cycle protein A3305_RS05125 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain A3305_RS05125 PF00326 Prolyl oligopeptidase family A3305_RS05130 PF00361 Proton-conducting membrane transporter A3305_RS05135 PF01850 PIN domain A3305_RS05155 PF00361 Proton-conducting membrane transporter A3305_RS05155 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus A3305_RS05155 PF13244 Domain of unknown function (DUF4040) A3305_RS05160 PF00361 Proton-conducting membrane transporter A3305_RS05165 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L A3305_RS05180 PF10913 Protein of unknown function (DUF2706) A3305_RS05185 PF04335 VirB8 protein A3305_RS05190 PF03524 Conjugal transfer protein A3305_RS05195 PF03743 Bacterial conjugation TrbI-like protein A3305_RS05200 PF00437 Type II/IV secretion system protein A3305_RS05205 PF02534 Type IV secretory system Conjugative DNA transfer A3305_RS05235 PF04860 Phage portal protein A3305_RS05245 PF11019 Protein of unknown function (DUF2608) A3305_RS05250 PF11019 Protein of unknown function (DUF2608) A3305_RS05255 PF00459 Inositol monophosphatase family A3305_RS05265 PF00488 MutS domain V A3305_RS05265 PF01624 MutS domain I A3305_RS05265 PF05190 MutS family domain IV A3305_RS05265 PF05188 MutS domain II A3305_RS05265 PF05192 MutS domain III A3305_RS05270 PF02502 Ribose/Galactose Isomerase A3305_RS05280 PF01863 Protein of unknown function DUF45 A3305_RS05285 PF02511 Thymidylate synthase complementing protein A3305_RS05290 PF07676 WD40-like Beta Propeller Repeat A3305_RS05290 PF04052 TolB amino-terminal domain A3305_RS05300 PF04542 Sigma-70 region 2 A3305_RS05300 PF04545 Sigma-70, region 4 A3305_RS05300 PF00140 Sigma-70 factor, region 1.2 A3305_RS05305 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 A3305_RS05320 PF13520 Amino acid permease A3305_RS05325 PF03129 Anticodon binding domain A3305_RS05325 PF13393 Histidyl-tRNA synthetase A3305_RS05335 PF00005 ABC transporter A3305_RS05335 PF12848 ABC transporter A3305_RS05340 PF00005 ABC transporter A3305_RS05340 PF12848 ABC transporter A3305_RS05345 PF12848 ABC transporter A3305_RS05345 PF16326 ABC transporter C-terminal domain A3305_RS05345 PF00005 ABC transporter A3305_RS05380 PF01618 MotA/TolQ/ExbB proton channel family A3305_RS05385 PF02472 Biopolymer transport protein ExbD/TolR A3305_RS05405 PF04607 Region found in RelA / SpoT proteins A3305_RS05405 PF02824 TGS domain A3305_RS05405 PF13291 ACT domain A3305_RS05410 PF00083 Sugar (and other) transporter A3305_RS05415 PF00529 HlyD membrane-fusion protein of T1SS A3305_RS05420 PF00664 ABC transporter transmembrane region A3305_RS05420 PF00005 ABC transporter A3305_RS05425 PF01118 Semialdehyde dehydrogenase, NAD binding domain A3305_RS05425 PF02774 Semialdehyde dehydrogenase, dimerisation domain A3305_RS05430 PF01230 HIT domain A3305_RS05435 PF10947 Protein of unknown function (DUF2628) A3305_RS05440 PF00227 Proteasome subunit A3305_RS05445 PF00493 MCM P-loop domain A3305_RS05445 PF07724 AAA domain (Cdc48 subfamily) A3305_RS05445 PF10431 C-terminal, D2-small domain, of ClpB protein A3305_RS05450 PF01078 Magnesium chelatase, subunit ChlI A3305_RS05450 PF13335 Magnesium chelatase, subunit ChlI C-terminal A3305_RS05455 PF01078 Magnesium chelatase, subunit ChlI A3305_RS05455 PF13335 Magnesium chelatase, subunit ChlI C-terminal A3305_RS05475 PF02684 Lipid-A-disaccharide synthetase A3305_RS05485 PF02618 YceG-like family A3305_RS05495 PF01491 Frataxin-like domain A3305_RS05500 PF02390 Putative methyltransferase A3305_RS05500 PF05175 Methyltransferase small domain A3305_RS05500 PF17827 PrmC N-terminal domain A3305_RS05505 PF11019 Protein of unknown function (DUF2608) A3305_RS05530 PF00749 tRNA synthetases class I (E and Q), catalytic domain A3305_RS05535 PF01751 Toprim domain A3305_RS05535 PF01396 Topoisomerase DNA binding C4 zinc finger A3305_RS05535 PF13368 Topoisomerase C-terminal repeat A3305_RS05535 PF01131 DNA topoisomerase A3305_RS05550 PF10417 C-terminal domain of 1-Cys peroxiredoxin A3305_RS05550 PF00578 AhpC/TSA family A3305_RS05555 PF01145 SPFH domain / Band 7 family A3305_RS05565 PF00884 Sulfatase A3305_RS05565 PF08019 Phosphoethanolamine transferase EptA/EptB A3305_RS05570 PF03652 Holliday junction resolvase A3305_RS05575 PF01381 Helix-turn-helix A3305_RS05590 PF08485 Polysaccharide biosynthesis protein C-terminal A3305_RS05590 PF02719 Polysaccharide biosynthesis protein A3305_RS05595 PF02350 UDP-N-acetylglucosamine 2-epimerase A3305_RS05610 PF00535 Glycosyl transferase family 2 A3305_RS05615 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion A3305_RS05620 PF11019 Protein of unknown function (DUF2608) A3305_RS05655 PF00163 Ribosomal protein S4/S9 N-terminal domain A3305_RS05655 PF01479 S4 domain A3305_RS05660 PF01040 UbiA prenyltransferase family A3305_RS05695 PF05239 PRC-barrel domain A3305_RS05695 PF01782 RimM N-terminal domain A3305_RS05705 PF02609 Exonuclease VII small subunit A3305_RS05725 PF02245 Methylpurine-DNA glycosylase (MPG) A3305_RS05735 PF01809 Putative membrane protein insertion efficiency factor A3305_RS05750 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit A3305_RS05755 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit A3305_RS05760 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit A3305_RS05765 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 A3305_RS05770 PF04932 O-Antigen ligase A3305_RS05775 PF09923 Uncharacterized protein conserved in bacteria (DUF2155) A3305_RS05790 PF02899 Phage integrase, N-terminal SAM-like domain A3305_RS05790 PF00589 Phage integrase family A3305_RS05795 PF17422 Family of unknown function (DUF5410) A3305_RS05800 PF17422 Family of unknown function (DUF5410) A3305_RS05810 PF00795 Carbon-nitrogen hydrolase A3305_RS05830 PF04392 ABC transporter substrate binding protein A3305_RS05835 PF02653 Branched-chain amino acid transport system / permease component A3305_RS05840 PF00005 ABC transporter A3305_RS05875 PF02600 Disulfide bond formation protein DsbB A3305_RS05880 PF01921 tRNA synthetases class I (K) A3305_RS05890 PF01515 Phosphate acetyl/butaryl transferase A3305_RS05890 PF00390 Malic enzyme, N-terminal domain A3305_RS05890 PF03949 Malic enzyme, NAD binding domain A3305_RS05910 PF07690 Major Facilitator Superfamily A3305_RS05935 PF00056 lactate/malate dehydrogenase, NAD binding domain A3305_RS05935 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain A3305_RS05955 PF03219 TLC ATP/ADP transporter A3305_RS05965 PF02348 Cytidylyltransferase A3305_RS05990 PF00115 Cytochrome C and Quinol oxidase polypeptide I A3305_RS05995 PF01227 GTP cyclohydrolase I A3305_RS06000 PF03129 Anticodon binding domain A3305_RS06000 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) A3305_RS06005 PF02661 Fic/DOC family A3305_RS06005 PF12728 Helix-turn-helix domain A3305_RS06015 PF07499 RuvA, C-terminal domain A3305_RS06015 PF01330 RuvA N terminal domain A3305_RS06035 PF17864 RuvB AAA lid domain A3305_RS06035 PF05496 Holliday junction DNA helicase RuvB P-loop domain A3305_RS06035 PF05491 RuvB C-terminal winged helix domain A3305_RS06040 PF00005 ABC transporter A3305_RS06040 PF00664 ABC transporter transmembrane region A3305_RS06045 PF07690 Major Facilitator Superfamily A3305_RS06050 PF00768 D-alanyl-D-alanine carboxypeptidase A3305_RS06050 PF07943 Penicillin-binding protein 5, C-terminal domain A3305_RS06055 PF03330 Lytic transglycolase A3305_RS06060 PF04972 BON domain A3305_RS06065 PF04279 Intracellular septation protein A A3305_RS06075 PF13473 Cupredoxin-like domain A3305_RS06080 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase A3305_RS06085 PF00775 Dioxygenase A3305_RS06090 PF00578 AhpC/TSA family A3305_RS06095 PF06965 Na+/H+ antiporter 1 A3305_RS06095 PF01343 Peptidase family S49 A3305_RS06100 PF00692 dUTPase A3305_RS06105 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain A3305_RS06105 PF01464 Transglycosylase SLT domain A3305_RS06115 PF02016 LD-carboxypeptidase N-terminal domain A3305_RS06115 PF17676 LD-carboxypeptidase C-terminal domain A3305_RS06120 PF12705 PD-(D/E)XK nuclease superfamily A3305_RS06130 PF07722 Peptidase C26 A3305_RS06135 PF00115 Cytochrome C and Quinol oxidase polypeptide I A3305_RS06140 PF00132 Bacterial transferase hexapeptide (six repeats) A3305_RS06145 PF02790 Cytochrome C oxidase subunit II, transmembrane domain A3305_RS06145 PF00116 Cytochrome C oxidase subunit II, periplasmic domain A3305_RS06155 PF04225 Opacity-associated protein A LysM-like domain A3305_RS06155 PF01551 Peptidase family M23 A3305_RS06160 PF01252 Signal peptidase (SPase) II A3305_RS06165 PF16198 tRNA pseudouridylate synthase B C-terminal domain A3305_RS06165 PF01509 TruB family pseudouridylate synthase (N terminal domain) A3305_RS06175 PF08245 Mur ligase middle domain A3305_RS06180 PF01098 Cell cycle protein A3305_RS06185 PF04101 Glycosyltransferase family 28 C-terminal domain A3305_RS06185 PF03033 Glycosyltransferase family 28 N-terminal domain A3305_RS06190 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) A3305_RS06200 PF00873 AcrB/AcrD/AcrF family A3305_RS06225 PF02321 Outer membrane efflux protein A3305_RS06230 PF00012 Hsp70 protein A3305_RS06235 PF00534 Glycosyl transferases group 1 A3305_RS06245 PF01678 Diaminopimelate epimerase A3305_RS06250 PF04055 Radical SAM superfamily A3305_RS06250 PF00919 Uncharacterized protein family UPF0004 A3305_RS06255 PF01409 tRNA synthetases class II core domain (F) A3305_RS06255 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain A3305_RS06260 PF03484 tRNA synthetase B5 domain A3305_RS06260 PF03147 Ferredoxin-fold anticodon binding domain A3305_RS06260 PF03483 B3/4 domain A3305_RS06260 PF01588 Putative tRNA binding domain A3305_RS06260 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain A3305_RS06265 PF02767 DNA polymerase III beta subunit, central domain A3305_RS06265 PF02768 DNA polymerase III beta subunit, C-terminal domain A3305_RS06265 PF00712 DNA polymerase III beta subunit, N-terminal domain A3305_RS06275 PF12100 Domain of unknown function (DUF3576) A3305_RS06280 PF13603 Leucyl-tRNA synthetase, Domain 2 A3305_RS06280 PF00133 tRNA synthetases class I (I, L, M and V) A3305_RS06280 PF08264 Anticodon-binding domain of tRNA A3305_RS06285 PF17827 PrmC N-terminal domain A3305_RS06285 PF05175 Methyltransferase small domain A3305_RS06285 PF02390 Putative methyltransferase A3305_RS06295 PF03900 Porphobilinogen deaminase, C-terminal domain A3305_RS06295 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain A3305_RS06300 PF01612 3'-5' exonuclease A3305_RS06300 PF00570 HRDC domain A3305_RS06310 PF04977 Septum formation initiator A3305_RS06320 PF01255 Putative undecaprenyl diphosphate synthase A3305_RS06325 PF00512 His Kinase A (phospho-acceptor) domain A3305_RS06325 PF00672 HAMP domain A3305_RS06325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3305_RS06330 PF00072 Response regulator receiver domain A3305_RS06330 PF00486 Transcriptional regulatory protein, C terminal A3305_RS06335 PF01063 Amino-transferase class IV A3305_RS06340 PF00701 Dihydrodipicolinate synthetase family A3305_RS06345 PF01668 SmpB protein A3305_RS06355 PF02629 CoA binding domain A3305_RS06355 PF00549 CoA-ligase A3305_RS06360 PF08442 ATP-grasp domain A3305_RS06360 PF00549 CoA-ligase A3305_RS06385 PF00326 Prolyl oligopeptidase family A3305_RS06390 PF04280 Tim44-like domain A3305_RS06405 PF02033 Ribosome-binding factor A A3305_RS06420 PF06271 RDD family A3305_RS06425 PF02132 RecR protein A3305_RS06425 PF13662 Toprim domain A3305_RS06440 PF01513 ATP-NAD kinase A3305_RS06445 PF12706 Beta-lactamase superfamily domain A3305_RS06445 PF17770 Ribonuclease J C-terminal domain A3305_RS06445 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain A3305_RS06450 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus A3305_RS06450 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus A3305_RS06460 PF12697 Alpha/beta hydrolase family A3305_RS06465 PF07992 Pyridine nucleotide-disulphide oxidoreductase A3305_RS06480 PF00171 Aldehyde dehydrogenase family A3305_RS06490 PF00535 Glycosyl transferase family 2 A3305_RS06495 PF13361 UvrD-like helicase C-terminal domain A3305_RS06495 PF00580 UvrD/REP helicase N-terminal domain A3305_RS06515 PF00291 Pyridoxal-phosphate dependent enzyme A3305_RS06515 PF00585 C-terminal regulatory domain of Threonine dehydratase A3305_RS06520 PF02190 ATP-dependent protease La (LON) substrate-binding domain A3305_RS06520 PF05362 Lon protease (S16) C-terminal proteolytic domain A3305_RS06520 PF00004 ATPase family associated with various cellular activities (AAA) A3305_RS06565 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein A3305_RS06565 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus A3305_RS06575 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain A3305_RS06575 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain A3305_RS06580 PF07992 Pyridine nucleotide-disulphide oxidoreductase A3305_RS06620 PF03477 ATP cone domain A3305_RS06620 PF02867 Ribonucleotide reductase, barrel domain A3305_RS06620 PF00317 Ribonucleotide reductase, all-alpha domain A3305_RS06635 PF00268 Ribonucleotide reductase, small chain A3305_RS06640 PF00805 Pentapeptide repeats (8 copies) A3305_RS06670 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I A3305_RS06670 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II A3305_RS06670 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III A3305_RS06670 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain A3305_RS06675 PF00005 ABC transporter A3305_RS06680 PF03968 OstA-like protein A3305_RS06685 PF06835 Lipopolysaccharide-assembly, LptC-related A3305_RS06690 PF01380 SIS domain A3305_RS06690 PF00571 CBS domain A3305_RS06695 PF00013 KH domain A3305_RS06695 PF01138 3' exoribonuclease family, domain 1 A3305_RS06695 PF03725 3' exoribonuclease family, domain 2 A3305_RS06695 PF00575 S1 RNA binding domain A3305_RS06695 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain A3305_RS06700 PF00312 Ribosomal protein S15 A3305_RS06705 PF16198 tRNA pseudouridylate synthase B C-terminal domain A3305_RS06705 PF01509 TruB family pseudouridylate synthase (N terminal domain) A3305_RS06710 PF03219 TLC ATP/ADP transporter A3305_RS06715 PF12574 120 KDa Rickettsia surface antigen A3305_RS06720 PF01381 Helix-turn-helix A3305_RS06725 PF03631 Virulence factor BrkB A3305_RS06735 PF02578 Multi-copper polyphenol oxidoreductase laccase A3305_RS06740 PF01327 Polypeptide deformylase A3305_RS06775 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain A3305_RS06775 PF02896 PEP-utilising enzyme, TIM barrel domain A3305_RS06775 PF00391 PEP-utilising enzyme, mobile domain A3305_RS06790 PF00133 tRNA synthetases class I (I, L, M and V) A3305_RS06790 PF08264 Anticodon-binding domain of tRNA A3305_RS06800 PF02632 BioY family A3305_RS06805 PF02875 Mur ligase family, glutamate ligase domain A3305_RS06805 PF08245 Mur ligase middle domain A3305_RS06815 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain A3305_RS06815 PF02777 Iron/manganese superoxide dismutases, C-terminal domain A3305_RS06895 PF01909 Nucleotidyltransferase domain A3305_RS06915 PF10097 Predicted membrane protein (DUF2335) A3305_RS06920 PF05198 Translation initiation factor IF-3, N-terminal domain A3305_RS06920 PF00707 Translation initiation factor IF-3, C-terminal domain A3305_RS06925 PF00364 Biotin-requiring enzyme A3305_RS06925 PF02817 e3 binding domain A3305_RS06925 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) A3305_RS06930 PF03462 PCRF domain A3305_RS06930 PF00472 RF-1 domain A3305_RS06935 PF02272 DHHA1 domain A3305_RS06935 PF01368 DHH family A3305_RS06935 PF17768 RecJ OB domain A3305_RS06940 PF13847 Methyltransferase domain A3305_RS06945 PF07498 Rho termination factor, N-terminal domain A3305_RS06945 PF07497 Rho termination factor, RNA-binding domain A3305_RS06945 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain A3305_RS06950 PF01343 Peptidase family S49 A3305_RS06955 PF00216 Bacterial DNA-binding protein A3305_RS07015 PF13091 PLD-like domain A3305_RS07030 PF13291 ACT domain A3305_RS07030 PF02824 TGS domain A3305_RS07030 PF04607 Region found in RelA / SpoT proteins A3305_RS07060 PF02824 TGS domain A3305_RS07060 PF04607 Region found in RelA / SpoT proteins A3305_RS07060 PF13291 ACT domain A3305_RS07065 PF00931 NB-ARC domain A3305_RS07065 PF03704 Bacterial transcriptional activator domain A3305_RS07065 PF00486 Transcriptional regulatory protein, C terminal A3305_RS07070 PF13291 ACT domain A3305_RS07070 PF02824 TGS domain A3305_RS07070 PF04607 Region found in RelA / SpoT proteins A3305_RS07075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3305_RS07075 PF00512 His Kinase A (phospho-acceptor) domain A3305_RS07075 PF01627 Hpt domain A3305_RS07075 PF00989 PAS fold A3305_RS07075 PF00072 Response regulator receiver domain A3305_RS07075 PF00497 Bacterial extracellular solute-binding proteins, family 3 A3305_RS07085 PF05857 TraX protein A3305_RS07090 PF03023 Lipid II flippase MurJ A3305_RS07095 PF00719 Inorganic pyrophosphatase A3305_RS07100 PF03100 CcmE A3305_RS07105 PF02630 SCO1/SenC A3305_RS07110 PF02355 Protein export membrane protein A3305_RS07115 PF02699 Preprotein translocase subunit A3305_RS07120 PF03330 Lytic transglycolase A3305_RS07155 PF00571 CBS domain A3305_RS07155 PF03448 MgtE intracellular N domain A3305_RS07155 PF01769 Divalent cation transporter A3305_RS07165 PF13344 Haloacid dehalogenase-like hydrolase A3305_RS07165 PF00293 NUDIX domain A3305_RS07170 PF00204 DNA gyrase B A3305_RS07170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3305_RS07170 PF01751 Toprim domain A3305_RS07170 PF00986 DNA gyrase B subunit, carboxyl terminus A3305_RS07180 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) A3305_RS07190 PF01192 RNA polymerase Rpb6 A3305_RS07195 PF01648 4'-phosphopantetheinyl transferase superfamily A3305_RS07205 PF07517 SecA DEAD-like domain A3305_RS07205 PF07516 SecA Wing and Scaffold domain A3305_RS07205 PF01043 SecA preprotein cross-linking domain A3305_RS07205 PF02810 SEC-C motif A3305_RS07225 PF00023 Ankyrin repeat A3305_RS07245 PF18766 SWI2/SNF2 ATPase A3305_RS07245 PF11867 Domain of unknown function (DUF3387) A3305_RS07245 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) A3305_RS07270 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain A3305_RS07270 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain A3305_RS07275 PF02805 Metal binding domain of Ada A3305_RS07275 PF12833 Helix-turn-helix domain A3305_RS07300 PF04314 Copper chaperone PCu(A)C A3305_RS07305 PF01541 GIY-YIG catalytic domain A3305_RS07305 PF08459 UvrC Helix-hairpin-helix N-terminal A3305_RS07305 PF02151 UvrB/uvrC motif A3305_RS07315 PF00474 Sodium:solute symporter family A3305_RS07330 PF02381 MraZ protein, putative antitoxin-like A3305_RS07335 PF01795 MraW methylase family A3305_RS07345 PF03717 Penicillin-binding Protein dimerisation domain A3305_RS07345 PF00905 Penicillin binding protein transpeptidase domain A3305_RS07360 PF00905 Penicillin binding protein transpeptidase domain A3305_RS07360 PF03717 Penicillin-binding Protein dimerisation domain A3305_RS07375 PF02954 Bacterial regulatory protein, Fis family A3305_RS07375 PF00072 Response regulator receiver domain A3305_RS07375 PF00158 Sigma-54 interaction domain A3305_RS07385 PF01494 FAD binding domain A3305_RS07420 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain A3305_RS07420 PF16113 Enoyl-CoA hydratase/isomerase A3305_RS07420 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain A3305_RS07425 PF17962 Bacterial macroglobulin domain 6 A3305_RS07425 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain A3305_RS07425 PF11974 Bacterial alpha-2-macroglobulin MG3 domain A3305_RS07425 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain A3305_RS07425 PF00207 Alpha-2-macroglobulin family A3305_RS07425 PF01835 MG2 domain A3305_RS07495 PF00579 tRNA synthetases class I (W and Y) A3305_RS07500 PF01728 FtsJ-like methyltransferase A3305_RS07500 PF01479 S4 domain A3305_RS07505 PF02082 Transcriptional regulator A3305_RS07520 PF17384 RimP C-terminal SH3 domain A3305_RS07520 PF02576 RimP N-terminal domain A3305_RS07525 PF00575 S1 RNA binding domain A3305_RS07525 PF08529 NusA N-terminal domain A3305_RS07525 PF13184 NusA-like KH domain A3305_RS07530 PF04760 Translation initiation factor IF-2, N-terminal region A3305_RS07530 PF11987 Translation-initiation factor 2 A3305_RS07530 PF00009 Elongation factor Tu GTP binding domain A3305_RS07545 PF00814 Glycoprotease family A3305_RS07555 PF02565 Recombination protein O C terminal A3305_RS07555 PF11967 Recombination protein O N terminal A3305_RS07565 PF18073 Rubredoxin metal binding domain A3305_RS07580 PF01479 S4 domain A3305_RS07580 PF00849 RNA pseudouridylate synthase A3305_RS07585 PF08245 Mur ligase middle domain A3305_RS07585 PF02875 Mur ligase family, glutamate ligase domain A3305_RS07585 PF01225 Mur ligase family, catalytic domain A3305_RS07590 PF03222 Tryptophan/tyrosine permease family A3305_RS07615 PF00772 DnaB-like helicase N terminal domain A3305_RS07615 PF03796 DnaB-like helicase C terminal domain A3305_RS07625 PF02441 Flavoprotein A3305_RS07630 PF18319 PriA DNA helicase Cys-rich region (CRR) domain A3305_RS07630 PF18074 Primosomal protein N C-terminal domain A3305_RS07630 PF17764 3′ DNA-binding domain (3′BD) A3305_RS07630 PF00271 Helicase conserved C-terminal domain A3305_RS07630 PF00270 DEAD/DEAH box helicase A3305_RS07645 PF00490 Delta-aminolevulinic acid dehydratase A3305_RS07655 PF00361 Proton-conducting membrane transporter A3305_RS07705 PF06691 Protein of unknown function (DUF1189) A3305_RS07725 PF02082 Transcriptional regulator A3305_RS07730 PF00266 Aminotransferase class-V A3305_RS07735 PF00266 Aminotransferase class-V A3305_RS07740 PF01592 NifU-like N terminal domain A3305_RS07745 PF01521 Iron-sulphur cluster biosynthesis A3305_RS07775 PF13520 Amino acid permease A3305_RS07780 PF02779 Transketolase, pyrimidine binding domain A3305_RS07780 PF16870 2-oxoglutarate dehydrogenase C-terminal A3305_RS07780 PF00676 Dehydrogenase E1 component A3305_RS07780 PF16078 2-oxoglutarate dehydrogenase N-terminus A3305_RS07795 PF00348 Polyprenyl synthetase A3305_RS07800 PF04932 O-Antigen ligase A3305_RS07810 PF03219 TLC ATP/ADP transporter A3305_RS07825 PF07690 Major Facilitator Superfamily A3305_RS07835 PF01810 LysE type translocator A3305_RS07850 PF07219 HemY protein N-terminus A3305_RS07855 PF02129 X-Pro dipeptidyl-peptidase (S15 family) A3305_RS07865 PF10116 Protein required for attachment to host cells A3305_RS07875 PF00579 tRNA synthetases class I (W and Y) A3305_RS07895 PF03900 Porphobilinogen deaminase, C-terminal domain A3305_RS07895 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain A3305_RS07910 PF00512 His Kinase A (phospho-acceptor) domain A3305_RS07910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A3305_RS07910 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) A3305_RS07910 PF00072 Response regulator receiver domain A3305_RS07910 PF01627 Hpt domain A3305_RS07910 PF00672 HAMP domain A3305_RS07935 PF00231 ATP synthase A3305_RS07945 PF01612 3'-5' exonuclease A3305_RS07945 PF00570 HRDC domain A3305_RS07955 PF01812 5-formyltetrahydrofolate cyclo-ligase family A3305_RS07960 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain A3305_RS07960 PF07992 Pyridine nucleotide-disulphide oxidoreductase A3305_RS07965 PF08241 Methyltransferase domain A3305_RS07995 PF10811 Protein of unknown function (DUF2532) A3305_RS08015 PF00444 Ribosomal protein L36 A3305_RS08020 PF02390 Putative methyltransferase A3305_RS08020 PF05175 Methyltransferase small domain A3305_RS08020 PF17827 PrmC N-terminal domain A3305_RS08025 PF01709 Transcriptional regulator A3305_RS08030 PF00132 Bacterial transferase hexapeptide (six repeats) A3305_RS08030 PF12804 MobA-like NTP transferase domain A3305_RS08095 PF01070 FMN-dependent dehydrogenase A3305_RS08165 PF06834 TraU protein A3305_RS08170 PF06834 TraU protein A3305_RS08190 PF01381 Helix-turn-helix A3305_RS08200 PF07015 VirC1 protein A3305_RS08225 PF00308 Bacterial dnaA protein A3305_RS08225 PF11638 DnaA N-terminal domain A3305_RS08225 PF08299 Bacterial dnaA protein helix-turn-helix A3305_RS08235 PF01381 Helix-turn-helix A3305_RS08285 PF01734 Patatin-like phospholipase A3305_RS08300 PF00239 Resolvase, N terminal domain A3305_RS08300 PF02796 Helix-turn-helix domain of resolvase A3305_RS08305 PF13538 UvrD-like helicase C-terminal domain A3305_RS08305 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain A3305_RS08305 PF14490 Helix-hairpin-helix containing domain A3305_RS08345 PF13291 ACT domain A3305_RS08345 PF04607 Region found in RelA / SpoT proteins A3305_RS08345 PF02824 TGS domain A3305_RS08360 PF01381 Helix-turn-helix A3305_RS08370 PF13614 AAA domain A3305_RS08440 PF02796 Helix-turn-helix domain of resolvase A3305_RS08440 PF00239 Resolvase, N terminal domain A3305_RS08475 PF04754 Putative transposase, YhgA-like A3305_RS08525 PF02811 PHP domain A3305_RS08525 PF14480 DNA polymerase III polC-type N-terminus I A3305_RS08525 PF01336 OB-fold nucleic acid binding domain A3305_RS08525 PF11490 DNA polymerase III polC-type N-terminus II A3305_RS08525 PF07733 Bacterial DNA polymerase III alpha NTPase domain A3305_RS08525 PF00929 Exonuclease A3305_RS08525 PF17657 Bacterial DNA polymerase III alpha subunit finger domain A3305_RS08525 PF14579 Helix-hairpin-helix motif A3305_RS08545 PF00011 Hsp20/alpha crystallin family A3305_RS08550 PF00011 Hsp20/alpha crystallin family A3305_RS08555 PF00239 Resolvase, N terminal domain A3305_RS08555 PF02796 Helix-turn-helix domain of resolvase A3305_RS08560 PF00875 DNA photolyase A3305_RS08560 PF03441 FAD binding domain of DNA photolyase A3305_RS08615 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain