A3305_RS00055 SM00368 Leucine rich repeat, ribonuclease inhibitor type A3305_RS00090 SM00316 Ribosomal protein S1-like RNA-binding domain A3305_RS00125 SM00387 Histidine kinase-like ATPases A3305_RS00135 SM00248 ankyrin repeats A3305_RS00135 SM00954 Region found in RelA / SpoT proteins A3305_RS00175 SM00028 Tetratricopeptide repeats A3305_RS00250 SM00957 SecA DEAD-like domain A3305_RS00255 SM00028 Tetratricopeptide repeats A3305_RS00310 SM00487 DEAD-like helicases superfamily A3305_RS00310 SM00490 helicase superfamily c-terminal domain A3305_RS00330 SM00882 Coenzyme A transferase A3305_RS00335 SM00882 Coenzyme A transferase A3305_RS00345 SM00246 Wiskott Aldrich syndrome homology region 2 A3305_RS00370 SM00487 DEAD-like helicases superfamily A3305_RS00370 SM00490 helicase superfamily c-terminal domain A3305_RS00370 SM00982 A3305_RS00370 A3305_RS00370 SM01058 CarD-like/TRCF domain A3305_RS00380 SM00450 Rhodanese Homology Domain A3305_RS00385 SM00382 ATPases associated with a variety of cellular activities A3305_RS00385 SM00760 Bacterial dnaA protein helix-turn-helix domain A3305_RS00555 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain A3305_RS00555 SM00387 Histidine kinase-like ATPases A3305_RS00555 SM00388 His Kinase A (phosphoacceptor) domain A3305_RS00605 SM00878 Biotin carboxylase C-terminal domain A3305_RS00615 SM00563 Phosphate acyltransferases A3305_RS00665 SM00954 Region found in RelA / SpoT proteins A3305_RS00680 SM00883 Chaperonin 10 Kd subunit A3305_RS00780 SM00662 RNA polymerases D A3305_RS00845 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. A3305_RS00850 SM01374 A3305_RS00850 A3305_RS00870 SM00322 K homology RNA-binding domain A3305_RS00885 SM01382 A3305_RS00885 A3305_RS00885 SM01383 A3305_RS00885 A3305_RS00905 SM01403 A3305_RS00905 A3305_RS00925 SM00967 RNA 2'-O ribose methyltransferase substrate binding A3305_RS00950 SM00864 Tubulin/FtsZ family, GTPase domain A3305_RS00950 SM00865 Tubulin/FtsZ family, C-terminal domain A3305_RS00975 SM00932 Scaffold protein Nfu/NifU N terminal A3305_RS00990 SM00487 DEAD-like helicases superfamily A3305_RS00990 SM00490 helicase superfamily c-terminal domain A3305_RS00995 SM00357 Cold shock protein domain A3305_RS01020 SM00650 Ribosomal RNA adenine dimethylases A3305_RS01120 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain A3305_RS01120 SM01232 A3305_RS01120 A3305_RS01240 SM00382 ATPases associated with a variety of cellular activities A3305_RS01240 SM00994 ClpX C4-type zinc finger A3305_RS01240 SM01086 C-terminal, D2-small domain, of ClpB protein A3305_RS01270 SM00382 ATPases associated with a variety of cellular activities A3305_RS01295 SM00382 ATPases associated with a variety of cellular activities A3305_RS01305 SM00116 Domain in cystathionine beta-synthase and other proteins. A3305_RS01305 SM01091 Transporter associated domain A3305_RS01325 SM00869 Autotransporter beta-domain A3305_RS01330 SM00954 Region found in RelA / SpoT proteins A3305_RS01345 SM00411 bacterial (prokaryotic) histone like domain A3305_RS01385 SM00292 breast cancer carboxy-terminal domain A3305_RS01385 SM00532 Ligase N family A3305_RS01465 SM00479 A3305_RS01465 A3305_RS01485 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. A3305_RS01635 SM01091 Transporter associated domain A3305_RS01650 SM00729 Elongator protein 3, MiaB family, Radical SAM A3305_RS01670 SM00478 endonuclease III A3305_RS01670 SM00525 A3305_RS01670 A3305_RS01735 SM00530 Helix-turn-helix XRE-family like proteins A3305_RS01830 SM00382 ATPases associated with a variety of cellular activities A3305_RS01835 SM00822 A3305_RS01835 A3305_RS01850 SM00825 Beta-ketoacyl synthase A3305_RS01855 SM00382 ATPases associated with a variety of cellular activities A3305_RS01875 SM00072 Guanylate kinase homologues. A3305_RS01885 SM00530 Helix-turn-helix XRE-family like proteins A3305_RS01940 SM00382 ATPases associated with a variety of cellular activities A3305_RS01940 SM00962 SRP54-type protein, GTPase domain A3305_RS01940 SM00963 SRP54-type protein, helical bundle domain A3305_RS01945 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs A3305_RS01945 SM00475 5'-3' exonuclease A3305_RS01945 SM00482 DNA polymerase A domain A3305_RS01995 SM00481 DNA polymerase alpha chain like domain A3305_RS02000 SM00984 UDP binding domain A3305_RS02090 SM00382 ATPases associated with a variety of cellular activities A3305_RS02105 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region A3305_RS02125 SM00382 ATPases associated with a variety of cellular activities A3305_RS02175 SM00729 Elongator protein 3, MiaB family, Radical SAM A3305_RS02205 SM00287 Bacterial SH3 domain homologues A3305_RS02335 SM00869 Autotransporter beta-domain A3305_RS02340 SM00382 ATPases associated with a variety of cellular activities A3305_RS02340 SM00843 A3305_RS02340 A3305_RS02425 SM00382 ATPases associated with a variety of cellular activities A3305_RS02480 SM01152 A3305_RS02480 A3305_RS02485 SM00387 Histidine kinase-like ATPases A3305_RS02530 SM00986 Uracil DNA glycosylase superfamily A3305_RS02530 SM00987 UreE urease accessory protein, C-terminal domain A3305_RS02535 SM00363 S4 RNA-binding domain A3305_RS02625 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain A3305_RS02640 SM00400 zinc finger A3305_RS02640 SM00493 A3305_RS02640 A3305_RS02660 SM01002 Alanine dehydrogenase/PNT, C-terminal domain A3305_RS02660 SM01003 Alanine dehydrogenase/PNT, N-terminal domain A3305_RS02675 SM00382 ATPases associated with a variety of cellular activities A3305_RS02730 SM00382 ATPases associated with a variety of cellular activities A3305_RS02735 SM00849 Metallo-beta-lactamase superfamily A3305_RS02740 SM00014 Acid phosphatase homologues A3305_RS02825 SM00644 A3305_RS02825 A3305_RS02845 SM00853 MutL C terminal dimerisation domain A3305_RS02845 SM01340 A3305_RS02845 A3305_RS02870 SM00028 Tetratricopeptide repeats A3305_RS02930 SM00382 ATPases associated with a variety of cellular activities A3305_RS03080 SM00905 Dihydroneopterin aldolase A3305_RS03125 SM01058 CarD-like/TRCF domain A3305_RS03210 SM00869 Autotransporter beta-domain A3305_RS03315 SM00382 ATPases associated with a variety of cellular activities A3305_RS03315 SM01086 C-terminal, D2-small domain, of ClpB protein A3305_RS03365 SM00382 ATPases associated with a variety of cellular activities A3305_RS03460 SM00562 A3305_RS03460 A3305_RS03465 SM01228 A3305_RS03465 A3305_RS03480 SM00470 ParB-like nuclease domain A3305_RS03485 SM00382 ATPases associated with a variety of cellular activities A3305_RS03515 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. A3305_RS03525 SM00836 DALR anticodon binding domain A3305_RS03525 SM01016 Arginyl tRNA synthetase N terminal dom A3305_RS03535 SM00434 DNA Topoisomerase IV A3305_RS03570 SM00382 ATPases associated with a variety of cellular activities A3305_RS03630 SM00382 ATPases associated with a variety of cellular activities A3305_RS03640 SM01005 Alanine racemase, C-terminal domain A3305_RS03645 SM01400 A3305_RS03645 A3305_RS03715 SM00840 A3305_RS03715 A3305_RS03720 SM00869 Autotransporter beta-domain A3305_RS03775 SM00448 cheY-homologous receiver domain A3305_RS03775 SM00862 Transcriptional regulatory protein, C terminal A3305_RS03820 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region A3305_RS03830 SM00358 Double-stranded RNA binding motif A3305_RS03830 SM00535 Ribonuclease III family A3305_RS03870 SM00244 prohibitin homologues A3305_RS03875 SM00244 prohibitin homologues A3305_RS03880 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. A3305_RS03890 SM00450 Rhodanese Homology Domain A3305_RS03930 SM00838 Elongation factor G C-terminus A3305_RS03930 SM00889 Elongation factor G, domain IV A3305_RS03945 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. A3305_RS03945 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. A3305_RS03950 SM00649 Ribosomal protein L11/L12 A3305_RS03975 SM00663 RNA polymerase I subunit A N-terminus A3305_RS04025 SM00903 Flavin reductase like domain A3305_RS04030 SM00062 Bacterial periplasmic substrate-binding proteins A3305_RS04030 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. A3305_RS04035 SM00845 GatB domain A3305_RS04100 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. A3305_RS04150 SM00411 bacterial (prokaryotic) histone like domain A3305_RS04160 SM00382 ATPases associated with a variety of cellular activities A3305_RS04160 SM00962 SRP54-type protein, GTPase domain A3305_RS04160 SM00963 SRP54-type protein, helical bundle domain A3305_RS04200 SM00729 Elongator protein 3, MiaB family, Radical SAM A3305_RS04275 SM00861 Transketolase, pyrimidine binding domain A3305_RS04305 SM00271 DnaJ molecular chaperone homology domain A3305_RS04450 SM00271 DnaJ molecular chaperone homology domain A3305_RS04465 SM00487 DEAD-like helicases superfamily A3305_RS04465 SM00490 helicase superfamily c-terminal domain A3305_RS04480 SM00382 ATPases associated with a variety of cellular activities A3305_RS04485 SM00434 DNA Topoisomerase IV A3305_RS04575 SM00382 ATPases associated with a variety of cellular activities A3305_RS04625 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain A3305_RS04680 SM00387 Histidine kinase-like ATPases A3305_RS04680 SM00433 TopoisomeraseII A3305_RS04685 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. A3305_RS04685 SM00245 tail specific protease A3305_RS04690 SM00387 Histidine kinase-like ATPases A3305_RS04690 SM00388 His Kinase A (phosphoacceptor) domain A3305_RS04705 SM00564 beta-propeller repeat A3305_RS04760 SM00267 diguanylate cyclase A3305_RS04760 SM00448 cheY-homologous receiver domain A3305_RS04765 SM00841 Elongation factor P, C-terminal A3305_RS04765 SM01185 A3305_RS04765 A3305_RS04820 SM00052 Putative diguanylate phosphodiesterase A3305_RS04845 SM00842 Cell division protein FtsA A3305_RS04880 SM00316 Ribosomal protein S1-like RNA-binding domain A3305_RS04895 SM00363 S4 RNA-binding domain A3305_RS04925 SM00861 Transketolase, pyrimidine binding domain A3305_RS04940 SM00935 Outer membrane protein (OmpH-like) A3305_RS04945 SM01329 A3305_RS04945 A3305_RS05015 SM00937 A3305_RS05015 A3305_RS05020 SM00838 Elongation factor G C-terminus A3305_RS05265 SM00533 DNA-binding domain of DNA mismatch repair MUTS family A3305_RS05265 SM00534 ATPase domain of DNA mismatch repair MUTS family A3305_RS05420 SM00382 ATPases associated with a variety of cellular activities A3305_RS05425 SM00859 Semialdehyde dehydrogenase, NAD binding domain A3305_RS05445 SM00382 ATPases associated with a variety of cellular activities A3305_RS05445 SM01086 C-terminal, D2-small domain, of ClpB protein A3305_RS05495 SM01219 A3305_RS05495 A3305_RS05535 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain A3305_RS05535 SM00437 Bacterial DNA topoisomerase I DNA-binding domain A3305_RS05535 SM00493 A3305_RS05535 A3305_RS05555 SM00244 prohibitin homologues A3305_RS05570 SM00732 Likely ribonuclease with RNase H fold. A3305_RS05655 SM00363 S4 RNA-binding domain A3305_RS05655 SM01390 A3305_RS05655 A3305_RS05735 SM01234 A3305_RS05735 A3305_RS05840 SM00382 ATPases associated with a variety of cellular activities A3305_RS05870 SM00248 ankyrin repeats A3305_RS05890 SM00919 Malic enzyme, NAD binding domain A3305_RS05890 SM01274 A3305_RS05890 A3305_RS06015 SM00278 Helix-hairpin-helix DNA-binding motif class 1 A3305_RS06035 SM00382 ATPases associated with a variety of cellular activities A3305_RS06040 SM00382 ATPases associated with a variety of cellular activities A3305_RS06250 SM00729 Elongator protein 3, MiaB family, Radical SAM A3305_RS06260 SM00873 B3/4 domain A3305_RS06260 SM00874 tRNA synthetase B5 domain A3305_RS06260 SM00896 Ferredoxin-fold anticodon binding domain A3305_RS06265 SM00480 DNA polymerase III beta subunit A3305_RS06300 SM00474 3'-5' exonuclease A3305_RS06325 SM00387 Histidine kinase-like ATPases A3305_RS06325 SM00388 His Kinase A (phosphoacceptor) domain A3305_RS06330 SM00448 cheY-homologous receiver domain A3305_RS06330 SM00862 Transcriptional regulatory protein, C terminal A3305_RS06340 SM01130 A3305_RS06340 A3305_RS06355 SM00881 CoA binding domain A3305_RS06390 SM00978 A3305_RS06390 A3305_RS06425 SM00493 A3305_RS06425 A3305_RS06445 SM00849 Metallo-beta-lactamase superfamily A3305_RS06520 SM00382 ATPases associated with a variety of cellular activities A3305_RS06520 SM00464 Found in ATP-dependent protease La (LON) A3305_RS06590 SM00972 Spore Coat Protein U domain A3305_RS06675 SM00382 ATPases associated with a variety of cellular activities A3305_RS06690 SM00116 Domain in cystathionine beta-synthase and other proteins. A3305_RS06695 SM00316 Ribosomal protein S1-like RNA-binding domain A3305_RS06695 SM00322 K homology RNA-binding domain A3305_RS06700 SM01387 A3305_RS06700 A3305_RS06720 SM00530 Helix-turn-helix XRE-family like proteins A3305_RS06730 SM01230 A3305_RS06730 A3305_RS06930 SM00937 A3305_RS06930 A3305_RS06945 SM00357 Cold shock protein domain A3305_RS06945 SM00382 ATPases associated with a variety of cellular activities A3305_RS06945 SM00959 Rho termination factor, N-terminal domain A3305_RS06955 SM00411 bacterial (prokaryotic) histone like domain A3305_RS06990 SM00028 Tetratricopeptide repeats A3305_RS07015 SM00155 Phospholipase D. Active site motifs. A3305_RS07030 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. A3305_RS07060 SM00954 Region found in RelA / SpoT proteins A3305_RS07065 SM00421 helix_turn_helix, Lux Regulon A3305_RS07075 SM00387 Histidine kinase-like ATPases A3305_RS07075 SM00388 His Kinase A (phosphoacceptor) domain A3305_RS07115 SM01323 A3305_RS07115 A3305_RS07155 SM00924 MgtE intracellular N domain A3305_RS07170 SM00387 Histidine kinase-like ATPases A3305_RS07170 SM00433 TopoisomeraseII A3305_RS07190 SM01409 A3305_RS07190 A3305_RS07205 SM00957 SecA DEAD-like domain A3305_RS07205 SM00958 SecA preprotein cross-linking domain A3305_RS07305 SM00278 Helix-hairpin-helix DNA-binding motif class 1 A3305_RS07305 SM00465 GIY-YIG type nucleases (URI domain) A3305_RS07375 SM00382 ATPases associated with a variety of cellular activities A3305_RS07375 SM00448 cheY-homologous receiver domain A3305_RS07425 SM01359 A3305_RS07425 A3305_RS07425 SM01360 A3305_RS07425 A3305_RS07500 SM00363 S4 RNA-binding domain A3305_RS07525 SM00316 Ribosomal protein S1-like RNA-binding domain A3305_RS07525 SM00322 K homology RNA-binding domain A3305_RS07565 SM00382 ATPases associated with a variety of cellular activities A3305_RS07580 SM00363 S4 RNA-binding domain A3305_RS07630 SM00487 DEAD-like helicases superfamily A3305_RS07630 SM00490 helicase superfamily c-terminal domain A3305_RS07645 SM01004 Delta-aminolevulinic acid dehydratase A3305_RS07870 SM00563 Phosphate acyltransferases A3305_RS07910 SM00388 His Kinase A (phosphoacceptor) domain A3305_RS07945 SM00341 Helicase and RNase D C-terminal A3305_RS07945 SM00474 3'-5' exonuclease A3305_RS08190 SM00530 Helix-turn-helix XRE-family like proteins A3305_RS08235 SM00530 Helix-turn-helix XRE-family like proteins A3305_RS08300 SM00857 Resolvase, N terminal domain A3305_RS08345 SM00368 Leucine rich repeat, ribonuclease inhibitor type A3305_RS08345 SM00954 Region found in RelA / SpoT proteins A3305_RS08360 SM00530 Helix-turn-helix XRE-family like proteins A3305_RS08440 SM00857 Resolvase, N terminal domain A3305_RS08450 SM00869 Autotransporter beta-domain A3305_RS08555 SM00857 Resolvase, N terminal domain