A1E_RS00015	SM00382	ATPases associated with a variety of cellular activities
A1E_RS00075	SM00869	Autotransporter beta-domain
A1E_RS00120	SM01058	CarD-like/TRCF domain
A1E_RS00155	SM00382	ATPases associated with a variety of cellular activities
A1E_RS00155	SM01086	C-terminal, D2-small domain, of ClpB protein
A1E_RS00195	SM00382	ATPases associated with a variety of cellular activities
A1E_RS00250	SM00562	A1E_RS00250
A1E_RS00255	SM01228	A1E_RS00255
A1E_RS00265	SM00470	ParB-like nuclease domain
A1E_RS00270	SM00382	ATPases associated with a variety of cellular activities
A1E_RS00290	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A1E_RS00295	SM00836	DALR anticodon binding domain
A1E_RS00295	SM01016	Arginyl tRNA synthetase N terminal dom
A1E_RS00305	SM00434	DNA Topoisomerase IV
A1E_RS00325	SM00448	cheY-homologous receiver domain
A1E_RS00325	SM00862	Transcriptional regulatory protein, C terminal
A1E_RS00380	SM00869	Autotransporter beta-domain
A1E_RS00385	SM00840	A1E_RS00385
A1E_RS00415	SM00028	Tetratricopeptide repeats
A1E_RS00430	SM01005	Alanine racemase, C-terminal domain
A1E_RS00440	SM00382	ATPases associated with a variety of cellular activities
A1E_RS00475	SM00382	ATPases associated with a variety of cellular activities
A1E_RS00535	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
A1E_RS00545	SM00358	Double-stranded RNA binding motif
A1E_RS00545	SM00535	Ribonuclease III family
A1E_RS00575	SM00244	prohibitin homologues
A1E_RS00580	SM00244	prohibitin homologues
A1E_RS00585	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A1E_RS00590	SM00450	Rhodanese Homology Domain
A1E_RS00630	SM00838	Elongation factor G C-terminus
A1E_RS00630	SM00889	Elongation factor G, domain IV
A1E_RS00645	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
A1E_RS00645	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A1E_RS00650	SM00649	Ribosomal protein L11/L12
A1E_RS00675	SM00663	RNA polymerase I subunit A N-terminus
A1E_RS00715	SM00903	Flavin reductase like domain
A1E_RS00720	SM00062	Bacterial periplasmic substrate-binding proteins
A1E_RS00720	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
A1E_RS00725	SM00845	GatB domain
A1E_RS00775	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A1E_RS00855	SM00271	DnaJ molecular chaperone homology domain
A1E_RS00880	SM00861	Transketolase, pyrimidine binding domain
A1E_RS00910	SM00729	Elongator protein 3, MiaB family, Radical SAM
A1E_RS00920	SM00382	ATPases associated with a variety of cellular activities
A1E_RS00920	SM00962	SRP54-type protein, GTPase domain
A1E_RS00920	SM00963	SRP54-type protein, helical bundle domain
A1E_RS00930	SM00411	bacterial (prokaryotic) histone like domain
A1E_RS00985	SM00271	DnaJ molecular chaperone homology domain
A1E_RS00995	SM00487	DEAD-like helicases superfamily
A1E_RS00995	SM00490	helicase superfamily c-terminal domain
A1E_RS01020	SM00479	A1E_RS01020
A1E_RS01080	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
A1E_RS01090	SM00434	DNA Topoisomerase IV
A1E_RS01130	SM00382	ATPases associated with a variety of cellular activities
A1E_RS01170	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A1E_RS01210	SM00387	Histidine kinase-like ATPases
A1E_RS01210	SM00433	TopoisomeraseII
A1E_RS01215	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A1E_RS01215	SM00245	tail specific protease
A1E_RS01220	SM00387	Histidine kinase-like ATPases
A1E_RS01220	SM00388	His Kinase A (phosphoacceptor) domain
A1E_RS01235	SM00564	beta-propeller repeat
A1E_RS01270	SM00267	diguanylate cyclase
A1E_RS01270	SM00448	cheY-homologous receiver domain
A1E_RS01275	SM00841	Elongation factor P, C-terminal
A1E_RS01275	SM01185	A1E_RS01275
A1E_RS01315	SM00052	Putative diguanylate phosphodiesterase
A1E_RS01340	SM00842	Cell division protein FtsA
A1E_RS01375	SM00316	Ribosomal protein S1-like RNA-binding domain
A1E_RS01385	SM00363	S4 RNA-binding domain
A1E_RS01405	SM00861	Transketolase, pyrimidine binding domain
A1E_RS01420	SM00935	Outer membrane protein (OmpH-like)
A1E_RS01425	SM01329	A1E_RS01425
A1E_RS01475	SM00838	Elongation factor G C-terminus
A1E_RS01520	SM00883	Chaperonin 10 Kd subunit
A1E_RS01530	SM00954	Region found in RelA / SpoT proteins
A1E_RS01555	SM00563	Phosphate acyltransferases
A1E_RS01570	SM00878	Biotin carboxylase C-terminal domain
A1E_RS01590	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A1E_RS01590	SM00387	Histidine kinase-like ATPases
A1E_RS01590	SM00388	His Kinase A (phosphoacceptor) domain
A1E_RS01600	SM00248	ankyrin repeats
A1E_RS01685	SM00382	ATPases associated with a variety of cellular activities
A1E_RS01685	SM00760	Bacterial dnaA protein helix-turn-helix domain
A1E_RS01700	SM00487	DEAD-like helicases superfamily
A1E_RS01700	SM00490	helicase superfamily c-terminal domain
A1E_RS01700	SM00982	A1E_RS01700
A1E_RS01700	SM01058	CarD-like/TRCF domain
A1E_RS01745	SM00487	DEAD-like helicases superfamily
A1E_RS01745	SM00490	helicase superfamily c-terminal domain
A1E_RS01785	SM01323	A1E_RS01785
A1E_RS01795	SM00924	MgtE intracellular N domain
A1E_RS01825	SM00387	Histidine kinase-like ATPases
A1E_RS01825	SM00433	TopoisomeraseII
A1E_RS01835	SM01409	A1E_RS01835
A1E_RS01850	SM00957	SecA DEAD-like domain
A1E_RS01850	SM00958	SecA preprotein cross-linking domain
A1E_RS01900	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A1E_RS01900	SM00465	GIY-YIG type nucleases (URI domain)
A1E_RS01970	SM00448	cheY-homologous receiver domain
A1E_RS02040	SM00363	S4 RNA-binding domain
A1E_RS02050	SM00316	Ribosomal protein S1-like RNA-binding domain
A1E_RS02050	SM00322	K homology RNA-binding domain
A1E_RS02080	SM00382	ATPases associated with a variety of cellular activities
A1E_RS02095	SM00363	S4 RNA-binding domain
A1E_RS02115	SM00487	DEAD-like helicases superfamily
A1E_RS02115	SM00490	helicase superfamily c-terminal domain
A1E_RS02125	SM01004	Delta-aminolevulinic acid dehydratase
A1E_RS02210	SM01321	A1E_RS02210
A1E_RS02250	SM00563	Phosphate acyltransferases
A1E_RS02295	SM00341	Helicase and RNase D C-terminal
A1E_RS02295	SM00474	3'-5' exonuclease
A1E_RS02380	SM00316	Ribosomal protein S1-like RNA-binding domain
A1E_RS02495	SM00357	Cold shock protein domain
A1E_RS02495	SM00382	ATPases associated with a variety of cellular activities
A1E_RS02495	SM00959	Rho termination factor, N-terminal domain
A1E_RS02510	SM00937	A1E_RS02510
A1E_RS02610	SM01230	A1E_RS02610
A1E_RS02620	SM00530	Helix-turn-helix XRE-family like proteins 
A1E_RS02640	SM01387	A1E_RS02640
A1E_RS02645	SM00316	Ribosomal protein S1-like RNA-binding domain
A1E_RS02645	SM00322	K homology RNA-binding domain
A1E_RS02650	SM00116	Domain in cystathionine beta-synthase and other proteins.
A1E_RS02665	SM00382	ATPases associated with a variety of cellular activities
A1E_RS02730	SM00382	ATPases associated with a variety of cellular activities
A1E_RS02730	SM00464	Found in ATP-dependent protease La (LON)
A1E_RS02795	SM00849	Metallo-beta-lactamase superfamily
A1E_RS02815	SM00493	A1E_RS02815
A1E_RS02835	SM00978	A1E_RS02835
A1E_RS02850	SM00881	CoA binding domain
A1E_RS02865	SM01130	A1E_RS02865
A1E_RS02875	SM00448	cheY-homologous receiver domain
A1E_RS02875	SM00862	Transcriptional regulatory protein, C terminal
A1E_RS02880	SM00387	Histidine kinase-like ATPases
A1E_RS02880	SM00388	His Kinase A (phosphoacceptor) domain
A1E_RS02900	SM00474	3'-5' exonuclease
A1E_RS02915	SM00480	DNA polymerase III beta subunit
A1E_RS02920	SM00873	B3/4 domain
A1E_RS02920	SM00874	tRNA synthetase B5 domain
A1E_RS02920	SM00896	Ferredoxin-fold anticodon binding domain
A1E_RS02930	SM00729	Elongator protein 3, MiaB family, Radical SAM
A1E_RS03095	SM00382	ATPases associated with a variety of cellular activities
A1E_RS03100	SM00382	ATPases associated with a variety of cellular activities
A1E_RS03115	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A1E_RS03205	SM00919	Malic enzyme, NAD binding domain
A1E_RS03205	SM01274	A1E_RS03205
A1E_RS03230	SM00644	A1E_RS03230
A1E_RS03310	SM01234	A1E_RS03310
A1E_RS03355	SM00363	S4 RNA-binding domain
A1E_RS03355	SM01390	A1E_RS03355
A1E_RS03420	SM00732	Likely ribonuclease with RNase H fold.
A1E_RS03430	SM00244	prohibitin homologues
A1E_RS03445	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
A1E_RS03445	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
A1E_RS03445	SM00493	A1E_RS03445
A1E_RS03470	SM01219	A1E_RS03470
A1E_RS03505	SM00382	ATPases associated with a variety of cellular activities
A1E_RS03505	SM01086	C-terminal, D2-small domain, of ClpB protein
A1E_RS03525	SM00859	Semialdehyde dehydrogenase, NAD binding domain
A1E_RS03530	SM00382	ATPases associated with a variety of cellular activities
A1E_RS03635	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
A1E_RS03635	SM00534	ATPase domain of DNA mismatch repair MUTS family
A1E_RS03795	SM00662	RNA polymerases D
A1E_RS03860	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A1E_RS03865	SM01374	A1E_RS03865
A1E_RS03885	SM00322	K homology RNA-binding domain
A1E_RS03900	SM01382	A1E_RS03900
A1E_RS03900	SM01383	A1E_RS03900
A1E_RS03920	SM01403	A1E_RS03920
A1E_RS03940	SM00967	RNA 2'-O ribose methyltransferase substrate binding
A1E_RS03960	SM00864	Tubulin/FtsZ family, GTPase domain
A1E_RS03960	SM00865	Tubulin/FtsZ family, C-terminal domain
A1E_RS03975	SM00932	Scaffold protein Nfu/NifU N terminal
A1E_RS03980	SM00487	DEAD-like helicases superfamily
A1E_RS03980	SM00490	helicase superfamily c-terminal domain
A1E_RS03985	SM00357	Cold shock protein domain
A1E_RS04000	SM00650	Ribosomal RNA adenine dimethylases
A1E_RS04050	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
A1E_RS04050	SM01232	A1E_RS04050
A1E_RS04125	SM00382	ATPases associated with a variety of cellular activities
A1E_RS04125	SM00994	ClpX C4-type zinc finger
A1E_RS04125	SM01086	C-terminal, D2-small domain, of ClpB protein
A1E_RS04145	SM00382	ATPases associated with a variety of cellular activities
A1E_RS04170	SM00382	ATPases associated with a variety of cellular activities
A1E_RS04180	SM00116	Domain in cystathionine beta-synthase and other proteins.
A1E_RS04180	SM01091	Transporter associated domain
A1E_RS04190	SM00869	Autotransporter beta-domain
A1E_RS04195	SM00954	Region found in RelA / SpoT proteins
A1E_RS04225	SM00292	breast cancer carboxy-terminal domain
A1E_RS04225	SM00532	Ligase N family
A1E_RS04255	SM01091	Transporter associated domain
A1E_RS04265	SM00729	Elongator protein 3, MiaB family, Radical SAM
A1E_RS04285	SM00478	endonuclease III
A1E_RS04285	SM00525	A1E_RS04285
A1E_RS04325	SM00530	Helix-turn-helix XRE-family like proteins 
A1E_RS04355	SM00382	ATPases associated with a variety of cellular activities
A1E_RS04360	SM00822	A1E_RS04360
A1E_RS04370	SM00825	Beta-ketoacyl synthase
A1E_RS04390	SM00072	Guanylate kinase homologues.
A1E_RS04395	SM00530	Helix-turn-helix XRE-family like proteins 
A1E_RS04440	SM00382	ATPases associated with a variety of cellular activities
A1E_RS04440	SM00962	SRP54-type protein, GTPase domain
A1E_RS04440	SM00963	SRP54-type protein, helical bundle domain
A1E_RS04445	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
A1E_RS04445	SM00475	5'-3' exonuclease
A1E_RS04445	SM00482	DNA polymerase A domain
A1E_RS04450	SM00481	DNA polymerase alpha chain like domain
A1E_RS04455	SM00984	UDP binding domain
A1E_RS04525	SM00382	ATPases associated with a variety of cellular activities
A1E_RS04550	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
A1E_RS04570	SM00382	ATPases associated with a variety of cellular activities
A1E_RS04600	SM00729	Elongator protein 3, MiaB family, Radical SAM
A1E_RS04620	SM00287	Bacterial SH3 domain homologues
A1E_RS04685	SM00155	Phospholipase D. Active site motifs.
A1E_RS04700	SM00869	Autotransporter beta-domain
A1E_RS04705	SM00382	ATPases associated with a variety of cellular activities
A1E_RS04705	SM00843	A1E_RS04705
A1E_RS04775	SM00382	ATPases associated with a variety of cellular activities
A1E_RS04800	SM01152	A1E_RS04800
A1E_RS04805	SM00387	Histidine kinase-like ATPases
A1E_RS04835	SM00986	Uracil DNA glycosylase superfamily
A1E_RS04835	SM00987	UreE urease accessory protein, C-terminal domain 
A1E_RS04840	SM00363	S4 RNA-binding domain
A1E_RS04855	SM00836	DALR anticodon binding domain
A1E_RS04895	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A1E_RS04910	SM00400	zinc finger
A1E_RS04910	SM00493	A1E_RS04910
A1E_RS04940	SM00382	ATPases associated with a variety of cellular activities
A1E_RS04955	SM00382	ATPases associated with a variety of cellular activities
A1E_RS04960	SM00849	Metallo-beta-lactamase superfamily
A1E_RS04965	SM00014	Acid phosphatase homologues
A1E_RS05000	SM00644	A1E_RS05000
A1E_RS05020	SM00853	MutL C terminal dimerisation domain
A1E_RS05020	SM01340	A1E_RS05020
A1E_RS05125	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
