locus-tag class description RMA_RS00005 PF03618 Kinase/pyrophosphorylase RMA_RS00010 PF00085 Thioredoxin RMA_RS00015 PF00005 ABC transporter RMA_RS00015 PF14524 Wzt C-terminal domain RMA_RS00020 PF01061 ABC-2 type transporter RMA_RS00025 PF07992 Pyridine nucleotide-disulphide oxidoreductase RMA_RS00035 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RMA_RS00035 PF00132 Bacterial transferase hexapeptide (six repeats) RMA_RS00040 PF07977 FabA-like domain RMA_RS00045 PF00132 Bacterial transferase hexapeptide (six repeats) RMA_RS00045 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD RMA_RS00085 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE RMA_RS00090 PF01297 Zinc-uptake complex component A periplasmic RMA_RS00095 PF01743 Poly A polymerase head domain RMA_RS00095 PF12627 Probable RNA and SrmB- binding site of polymerase A RMA_RS00095 PF12626 Polymerase A arginine-rich C-terminus RMA_RS00110 PF03797 Autotransporter beta-domain RMA_RS00165 PF00430 ATP synthase B/B' CF(0) RMA_RS00170 PF00430 ATP synthase B/B' CF(0) RMA_RS00175 PF00137 ATP synthase subunit C RMA_RS00180 PF00119 ATP synthase A chain RMA_RS00185 PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter RMA_RS00190 PF13462 Thioredoxin RMA_RS00200 PF13847 Methyltransferase domain RMA_RS00200 PF10119 Predicted methyltransferase regulatory domain RMA_RS00205 PF02463 RecF/RecN/SMC N terminal domain RMA_RS00225 PF00809 Pterin binding enzyme RMA_RS00235 PF02152 Dihydroneopterin aldolase RMA_RS00240 PF17372 Family of unknown function (DUF5394) RMA_RS00265 PF02630 SCO1/SenC RMA_RS00270 PF02622 Uncharacterized ACR, COG1678 RMA_RS00300 PF10871 Protein of unknown function (DUF2748) RMA_RS00345 PF02861 Clp amino terminal domain, pathogenicity island component RMA_RS00345 PF10431 C-terminal, D2-small domain, of ClpB protein RMA_RS00345 PF00004 ATPase family associated with various cellular activities (AAA) RMA_RS00345 PF07724 AAA domain (Cdc48 subfamily) RMA_RS00345 PF17871 AAA lid domain RMA_RS00350 PF17462 Family of unknown function (DUF5424) RMA_RS00355 PF00814 Glycoprotease family RMA_RS00370 PF01250 Ribosomal protein S6 RMA_RS00375 PF01084 Ribosomal protein S18 RMA_RS00380 PF03948 Ribosomal protein L9, C-terminal domain RMA_RS00380 PF01281 Ribosomal protein L9, N-terminal domain RMA_RS00385 PF01171 PP-loop family RMA_RS00390 PF00004 ATPase family associated with various cellular activities (AAA) RMA_RS00390 PF17862 AAA+ lid domain RMA_RS00390 PF06480 FtsH Extracellular RMA_RS00390 PF01434 Peptidase family M41 RMA_RS00405 PF13085 2Fe-2S iron-sulfur cluster binding domain RMA_RS00415 PF16198 tRNA pseudouridylate synthase B C-terminal domain RMA_RS00415 PF01509 TruB family pseudouridylate synthase (N terminal domain) RMA_RS00420 PF01790 Prolipoprotein diacylglyceryl transferase RMA_RS00425 PF00924 Mechanosensitive ion channel RMA_RS00430 PF14849 YidC periplasmic domain RMA_RS00430 PF02096 60Kd inner membrane protein RMA_RS00435 PF01066 CDP-alcohol phosphatidyltransferase RMA_RS00470 PF01327 Polypeptide deformylase RMA_RS00475 PF03219 TLC ATP/ADP transporter RMA_RS00480 PF07690 Major Facilitator Superfamily RMA_RS00485 PF00334 Nucleoside diphosphate kinase RMA_RS00490 PF13932 GidA associated domain RMA_RS00490 PF01134 Glucose inhibited division protein A RMA_RS00495 PF02527 rRNA small subunit methyltransferase G RMA_RS00500 PF13614 AAA domain RMA_RS00505 PF02195 ParB-like nuclease domain RMA_RS00505 PF17762 HTH domain found in ParB protein RMA_RS00510 PF00005 ABC transporter RMA_RS00510 PF12848 ABC transporter RMA_RS00515 PF10878 Protein of unknown function (DUF2672) RMA_RS00520 PF00793 DAHP synthetase I family RMA_RS00550 PF01521 Iron-sulphur cluster biosynthesis RMA_RS00555 PF13286 Phosphohydrolase-associated domain RMA_RS00555 PF01966 HD domain RMA_RS00560 PF00750 tRNA synthetases class I (R) RMA_RS00560 PF03485 Arginyl tRNA synthetase N terminal domain RMA_RS00560 PF05746 DALR anticodon binding domain RMA_RS00565 PF05036 Sporulation related domain RMA_RS00570 PF03989 DNA gyrase C-terminal domain, beta-propeller RMA_RS00570 PF00521 DNA gyrase/topoisomerase IV, subunit A RMA_RS00580 PF13609 Gram-negative porin RMA_RS00585 PF00692 dUTPase RMA_RS00590 PF02556 Preprotein translocase subunit SecB RMA_RS00595 PF00072 Response regulator receiver domain RMA_RS00595 PF00486 Transcriptional regulatory protein, C terminal RMA_RS00600 PF14489 QueF-like protein RMA_RS00600 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term RMA_RS00610 PF02233 NAD(P) transhydrogenase beta subunit RMA_RS00615 PF03922 OmpW family RMA_RS00620 PF00892 EamA-like transporter family RMA_RS00625 PF07690 Major Facilitator Superfamily RMA_RS00645 PF03840 Preprotein translocase SecG subunit RMA_RS00655 PF03797 Autotransporter beta-domain RMA_RS00660 PF01406 tRNA synthetases class I (C) catalytic domain RMA_RS00660 PF09190 DALR domain RMA_RS00665 PF00318 Ribosomal protein S2 RMA_RS00670 PF00889 Elongation factor TS RMA_RS00685 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) RMA_RS00690 PF04028 Domain of unknown function (DUF374) RMA_RS00695 PF00155 Aminotransferase class I and II RMA_RS00700 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system RMA_RS00705 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system RMA_RS00715 PF04333 MlaA lipoprotein RMA_RS00725 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RMA_RS00725 PF14572 Phosphoribosyl synthetase-associated domain RMA_RS00730 PF00842 Alanine racemase, C-terminal domain RMA_RS00730 PF01168 Alanine racemase, N-terminal domain RMA_RS00735 PF02405 Permease MlaE RMA_RS00740 PF00005 ABC transporter RMA_RS00745 PF17629 Family of unknown function (DUF5510) RMA_RS00775 PF00830 Ribosomal L28 family RMA_RS00780 PF01197 Ribosomal protein L31 RMA_RS00790 PF01926 50S ribosome-binding GTPase RMA_RS00795 PF00696 Amino acid kinase family RMA_RS00805 PF03135 CagE, TrbE, VirB family, component of type IV transporter system RMA_RS00810 PF04610 TrbL/VirB6 plasmid conjugal transfer protein RMA_RS00815 PF04610 TrbL/VirB6 plasmid conjugal transfer protein RMA_RS00820 PF04610 TrbL/VirB6 plasmid conjugal transfer protein RMA_RS00825 PF04610 TrbL/VirB6 plasmid conjugal transfer protein RMA_RS00850 PF01746 tRNA (Guanine-1)-methyltransferase RMA_RS00855 PF01245 Ribosomal protein L19 RMA_RS00860 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) RMA_RS00865 PF07549 SecD/SecF GG Motif RMA_RS00865 PF02355 Protein export membrane protein RMA_RS00870 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RMA_RS00870 PF10531 SLBB domain RMA_RS00870 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RMA_RS00875 PF10502 Signal peptidase, peptidase S26 RMA_RS00880 PF00035 Double-stranded RNA binding motif RMA_RS00880 PF14622 Ribonuclease-III-like RMA_RS00885 PF07650 KH domain RMA_RS00885 PF01926 50S ribosome-binding GTPase RMA_RS00890 PF02075 Crossover junction endodeoxyribonuclease RuvC RMA_RS00895 PF00588 SpoU rRNA Methylase family RMA_RS00910 PF06258 Mitochondrial fission ELM1 RMA_RS00915 PF10609 NUBPL iron-transfer P-loop NTPase RMA_RS00920 PF01145 SPFH domain / Band 7 family RMA_RS00920 PF12221 Bacterial membrane protein N terminal RMA_RS00925 PF01145 SPFH domain / Band 7 family RMA_RS00930 PF13180 PDZ domain RMA_RS00935 PF17773 UPF0176 acylphosphatase like domain RMA_RS00935 PF00581 Rhodanese-like domain RMA_RS00940 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RMA_RS00945 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RMA_RS00950 PF02910 Fumarate reductase flavoprotein C-term RMA_RS00950 PF00890 FAD binding domain RMA_RS00955 PF00528 Binding-protein-dependent transport system inner membrane component RMA_RS00960 PF00164 Ribosomal protein S12/S23 RMA_RS00965 PF00177 Ribosomal protein S7p/S5e RMA_RS00970 PF14492 Elongation Factor G, domain II RMA_RS00970 PF03764 Elongation factor G, domain IV RMA_RS00970 PF00679 Elongation factor G C-terminus RMA_RS00970 PF00009 Elongation factor Tu GTP binding domain RMA_RS00970 PF03144 Elongation factor Tu domain 2 RMA_RS00980 PF00584 SecE/Sec61-gamma subunits of protein translocation complex RMA_RS00985 PF02357 Transcription termination factor nusG RMA_RS00985 PF00467 KOW motif RMA_RS00990 PF03946 Ribosomal protein L11, N-terminal domain RMA_RS00990 PF00298 Ribosomal protein L11, RNA binding domain RMA_RS00995 PF00687 Ribosomal protein L1p/L10e family RMA_RS01000 PF00466 Ribosomal protein L10 RMA_RS01005 PF16320 Ribosomal protein L7/L12 dimerisation domain RMA_RS01005 PF00542 Ribosomal protein L7/L12 C-terminal domain RMA_RS01010 PF04560 RNA polymerase Rpb2, domain 7 RMA_RS01010 PF04563 RNA polymerase beta subunit RMA_RS01010 PF04561 RNA polymerase Rpb2, domain 2 RMA_RS01010 PF04565 RNA polymerase Rpb2, domain 3 RMA_RS01010 PF00562 RNA polymerase Rpb2, domain 6 RMA_RS01010 PF10385 RNA polymerase beta subunit external 1 domain RMA_RS01015 PF04998 RNA polymerase Rpb1, domain 5 RMA_RS01015 PF05000 RNA polymerase Rpb1, domain 4 RMA_RS01015 PF04983 RNA polymerase Rpb1, domain 3 RMA_RS01015 PF00623 RNA polymerase Rpb1, domain 2 RMA_RS01015 PF04997 RNA polymerase Rpb1, domain 1 RMA_RS01020 PF02779 Transketolase, pyrimidine binding domain RMA_RS01020 PF16870 2-oxoglutarate dehydrogenase C-terminal RMA_RS01020 PF00676 Dehydrogenase E1 component RMA_RS01020 PF16078 2-oxoglutarate dehydrogenase N-terminus RMA_RS01025 PF02789 Cytosol aminopeptidase family, N-terminal domain RMA_RS01025 PF00883 Cytosol aminopeptidase family, catalytic domain RMA_RS01035 PF11304 Protein of unknown function (DUF3106) RMA_RS01040 PF00152 tRNA synthetases class II (D, K and N) RMA_RS01040 PF02938 GAD domain RMA_RS01040 PF01336 OB-fold nucleic acid binding domain RMA_RS01050 PF01027 Inhibitor of apoptosis-promoting Bax1 RMA_RS01055 PF05173 Dihydrodipicolinate reductase, C-terminus RMA_RS01055 PF01113 Dihydrodipicolinate reductase, N-terminus RMA_RS01060 PF01613 Flavin reductase like domain RMA_RS01065 PF00497 Bacterial extracellular solute-binding proteins, family 3 RMA_RS01070 PF02934 GatB/GatE catalytic domain RMA_RS01070 PF02637 GatB domain RMA_RS01075 PF01425 Amidase RMA_RS01080 PF02686 Glu-tRNAGln amidotransferase C subunit RMA_RS01085 PF01765 Ribosome recycling factor RMA_RS01090 PF00696 Amino acid kinase family RMA_RS01100 PF07690 Major Facilitator Superfamily RMA_RS01105 PF10879 Protein of unknown function (DUF2674) RMA_RS01125 PF01103 Surface antigen RMA_RS01125 PF07244 Surface antigen variable number repeat RMA_RS01130 PF02163 Peptidase family M50 RMA_RS01130 PF17820 PDZ domain RMA_RS01135 PF01029 NusB family RMA_RS01140 PF01728 FtsJ-like methyltransferase RMA_RS01155 PF03364 Polyketide cyclase / dehydrase and lipid transport RMA_RS01160 PF07896 Protein of unknown function (DUF1674) RMA_RS01165 PF04452 RNA methyltransferase RMA_RS01170 PF04070 Domain of unknown function (DUF378) RMA_RS01175 PF00873 AcrB/AcrD/AcrF family RMA_RS01180 PF00216 Bacterial DNA-binding protein RMA_RS01185 PF09115 DNA polymerase III, delta subunit, C terminal RMA_RS01190 PF02881 SRP54-type protein, helical bundle domain RMA_RS01190 PF00448 SRP54-type protein, GTPase domain RMA_RS01190 PF02978 Signal peptide binding domain RMA_RS01200 PF06969 HemN C-terminal domain RMA_RS01200 PF04055 Radical SAM superfamily RMA_RS01210 PF12796 Ankyrin repeats (3 copies) RMA_RS01235 PF00375 Sodium:dicarboxylate symporter family RMA_RS01245 PF01242 6-pyruvoyl tetrahydropterin synthase RMA_RS01250 PF02817 e3 binding domain RMA_RS01250 PF00364 Biotin-requiring enzyme RMA_RS01250 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RMA_RS01255 PF16078 2-oxoglutarate dehydrogenase N-terminus RMA_RS01255 PF02779 Transketolase, pyrimidine binding domain RMA_RS01255 PF16870 2-oxoglutarate dehydrogenase C-terminal RMA_RS01255 PF00676 Dehydrogenase E1 component RMA_RS01265 PF02463 RecF/RecN/SMC N terminal domain RMA_RS01270 PF13525 Outer membrane lipoprotein RMA_RS01280 PF00226 DnaJ domain RMA_RS01280 PF01556 DnaJ C terminal domain RMA_RS01280 PF00684 DnaJ central domain RMA_RS01285 PF00012 Hsp70 protein RMA_RS01325 PF00510 Cytochrome c oxidase subunit III RMA_RS01330 PF04956 TrbC/VIRB2 family RMA_RS01335 PF13717 zinc-ribbon domain RMA_RS01340 PF00132 Bacterial transferase hexapeptide (six repeats) RMA_RS01340 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal RMA_RS01340 PF14602 Hexapeptide repeat of succinyl-transferase RMA_RS01360 PF00912 Transglycosylase RMA_RS01360 PF00905 Penicillin binding protein transpeptidase domain RMA_RS01360 PF06832 Penicillin-Binding Protein C-terminus Family RMA_RS01405 PF03797 Autotransporter beta-domain RMA_RS01410 PF00582 Universal stress protein family RMA_RS01425 PF00111 2Fe-2S iron-sulfur cluster binding domain RMA_RS01430 PF00012 Hsp70 protein RMA_RS01435 PF00226 DnaJ domain RMA_RS01435 PF07743 HSCB C-terminal oligomerisation domain RMA_RS01440 PF01351 Ribonuclease HII RMA_RS01445 PF00271 Helicase conserved C-terminal domain RMA_RS01445 PF02151 UvrB/uvrC motif RMA_RS01445 PF12344 Ultra-violet resistance protein B RMA_RS01445 PF17757 UvrB interaction domain RMA_RS01445 PF04851 Type III restriction enzyme, res subunit RMA_RS01450 PF00462 Glutaredoxin RMA_RS01455 PF00664 ABC transporter transmembrane region RMA_RS01455 PF00005 ABC transporter RMA_RS01460 PF00521 DNA gyrase/topoisomerase IV, subunit A RMA_RS01460 PF03989 DNA gyrase C-terminal domain, beta-propeller RMA_RS01500 PF01327 Polypeptide deformylase RMA_RS01505 PF02911 Formyl transferase, C-terminal domain RMA_RS01505 PF00551 Formyl transferase RMA_RS01570 PF00664 ABC transporter transmembrane region RMA_RS01570 PF00005 ABC transporter RMA_RS01575 PF10877 Protein of unknown function (DUF2671) RMA_RS01580 PF01654 Cytochrome bd terminal oxidase subunit I RMA_RS01585 PF02322 Cytochrome bd terminal oxidase subunit II RMA_RS01590 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system RMA_RS01600 PF00535 Glycosyl transferase family 2 RMA_RS01605 PF05193 Peptidase M16 inactive domain RMA_RS01605 PF00675 Insulinase (Peptidase family M16) RMA_RS01610 PF01259 SAICAR synthetase RMA_RS01620 PF03129 Anticodon binding domain RMA_RS01620 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RMA_RS01620 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RMA_RS01620 PF02824 TGS domain RMA_RS01645 PF00005 ABC transporter RMA_RS01645 PF00664 ABC transporter transmembrane region RMA_RS01660 PF10859 Protein of unknown function (DUF2660) RMA_RS01670 PF02321 Outer membrane efflux protein RMA_RS01675 PF10691 Protein of unknown function (DUF2497) RMA_RS01685 PF00204 DNA gyrase B RMA_RS01685 PF01751 Toprim domain RMA_RS01685 PF00986 DNA gyrase B subunit, carboxyl terminus RMA_RS01685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RMA_RS01690 PF13180 PDZ domain RMA_RS01690 PF03572 Peptidase family S41 RMA_RS01695 PF13188 PAS domain RMA_RS01695 PF00989 PAS fold RMA_RS01695 PF00512 His Kinase A (phospho-acceptor) domain RMA_RS01695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RMA_RS01705 PF10858 Protein of unknown function (DUF2659) RMA_RS01710 PF13360 PQQ-like domain RMA_RS01715 PF00572 Ribosomal protein L13 RMA_RS01720 PF00380 Ribosomal protein S9/S16 RMA_RS01740 PF01329 Pterin 4 alpha carbinolamine dehydratase RMA_RS01755 PF00293 NUDIX domain RMA_RS01760 PF00990 Diguanylate cyclase, GGDEF domain RMA_RS01760 PF00072 Response regulator receiver domain RMA_RS01765 PF01132 Elongation factor P (EF-P) OB domain RMA_RS01765 PF09285 Elongation factor P, C-terminal RMA_RS01765 PF08207 Elongation factor P (EF-P) KOW-like domain RMA_RS01770 PF00459 Inositol monophosphatase family RMA_RS01775 PF11020 Domain of unknown function (DUF2610) RMA_RS01780 PF02666 Phosphatidylserine decarboxylase RMA_RS01785 PF01066 CDP-alcohol phosphatidyltransferase RMA_RS01790 PF13533 Biotin-lipoyl like RMA_RS01815 PF00563 EAL domain RMA_RS01820 PF08245 Mur ligase middle domain RMA_RS01820 PF01225 Mur ligase family, catalytic domain RMA_RS01820 PF02875 Mur ligase family, glutamate ligase domain RMA_RS01825 PF01565 FAD binding domain RMA_RS01825 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RMA_RS01830 PF07478 D-ala D-ala ligase C-terminus RMA_RS01830 PF01820 D-ala D-ala ligase N-terminus RMA_RS01835 PF03799 Cell division protein FtsQ RMA_RS01835 PF08478 POTRA domain, FtsQ-type RMA_RS01840 PF02491 SHS2 domain inserted in FTSA RMA_RS01845 PF01957 NfeD-like C-terminal, partner-binding RMA_RS01850 PF00034 Cytochrome c RMA_RS01860 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase RMA_RS01870 PF00575 S1 RNA binding domain RMA_RS01870 PF10150 Ribonuclease E/G family RMA_RS01875 PF02628 Cytochrome oxidase assembly protein RMA_RS01880 PF00849 RNA pseudouridylate synthase RMA_RS01880 PF01479 S4 domain RMA_RS01885 PF11954 Domain of unknown function (DUF3471) RMA_RS01885 PF00144 Beta-lactamase RMA_RS01890 PF03372 Endonuclease/Exonuclease/phosphatase family RMA_RS01895 PF00676 Dehydrogenase E1 component RMA_RS01900 PF02779 Transketolase, pyrimidine binding domain RMA_RS01900 PF02780 Transketolase, C-terminal domain RMA_RS01905 PF00679 Elongation factor G C-terminus RMA_RS01905 PF03144 Elongation factor Tu domain 2 RMA_RS01905 PF00009 Elongation factor Tu GTP binding domain RMA_RS01925 PF00180 Isocitrate/isopropylmalate dehydrogenase RMA_RS01925 PF18324 Hypothetical protein TT1725 RMA_RS01930 PF03334 Na+/H+ antiporter subunit RMA_RS01935 PF00361 Proton-conducting membrane transporter RMA_RS01935 PF13244 Domain of unknown function (DUF4040) RMA_RS01935 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RMA_RS01940 PF03379 CcmB protein RMA_RS01945 PF10875 Protein of unknown function (DUF2670) RMA_RS01950 PF00355 Rieske [2Fe-2S] domain RMA_RS01950 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal RMA_RS01955 PF00032 Cytochrome b(C-terminal)/b6/petD RMA_RS01955 PF00033 Cytochrome b/b6/petB RMA_RS01965 PF00033 Cytochrome b/b6/petB RMA_RS01965 PF02167 Cytochrome C1 family RMA_RS01965 PF00032 Cytochrome b(C-terminal)/b6/petD RMA_RS01975 PF00011 Hsp20/alpha crystallin family RMA_RS01985 PF06250 YhcG PDDEXK nuclease domain RMA_RS01985 PF17761 DUF1016 N-terminal domain RMA_RS01995 PF00472 RF-1 domain RMA_RS01995 PF03462 PCRF domain RMA_RS02000 PF00009 Elongation factor Tu GTP binding domain RMA_RS02000 PF06421 GTP-binding protein LepA C-terminus RMA_RS02000 PF03144 Elongation factor Tu domain 2 RMA_RS02000 PF00679 Elongation factor G C-terminus RMA_RS02015 PF03797 Autotransporter beta-domain RMA_RS02085 PF01098 Cell cycle protein RMA_RS02090 PF00326 Prolyl oligopeptidase family RMA_RS02090 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain RMA_RS02095 PF00361 Proton-conducting membrane transporter RMA_RS02100 PF01850 PIN domain RMA_RS02110 PF13244 Domain of unknown function (DUF4040) RMA_RS02110 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RMA_RS02110 PF00361 Proton-conducting membrane transporter RMA_RS02115 PF00361 Proton-conducting membrane transporter RMA_RS02120 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RMA_RS02135 PF10913 Protein of unknown function (DUF2706) RMA_RS02140 PF04335 VirB8 protein RMA_RS02145 PF03524 Conjugal transfer protein RMA_RS02150 PF03743 Bacterial conjugation TrbI-like protein RMA_RS02155 PF00437 Type II/IV secretion system protein RMA_RS02160 PF02534 Type IV secretory system Conjugative DNA transfer RMA_RS02200 PF11019 Protein of unknown function (DUF2608) RMA_RS02205 PF11019 Protein of unknown function (DUF2608) RMA_RS02210 PF00459 Inositol monophosphatase family RMA_RS02215 PF05192 MutS domain III RMA_RS02215 PF05190 MutS family domain IV RMA_RS02215 PF05188 MutS domain II RMA_RS02215 PF00488 MutS domain V RMA_RS02215 PF01624 MutS domain I RMA_RS02220 PF02502 Ribose/Galactose Isomerase RMA_RS02235 PF02511 Thymidylate synthase complementing protein RMA_RS02240 PF07676 WD40-like Beta Propeller Repeat RMA_RS02240 PF04052 TolB amino-terminal domain RMA_RS02245 PF00140 Sigma-70 factor, region 1.2 RMA_RS02245 PF04545 Sigma-70, region 4 RMA_RS02245 PF04542 Sigma-70 region 2 RMA_RS02250 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 RMA_RS02265 PF13520 Amino acid permease RMA_RS02270 PF13393 Histidyl-tRNA synthetase RMA_RS02270 PF03129 Anticodon binding domain RMA_RS02275 PF00005 ABC transporter RMA_RS02275 PF12399 Branched-chain amino acid ATP-binding cassette transporter RMA_RS02310 PF01618 MotA/TolQ/ExbB proton channel family RMA_RS02315 PF02472 Biopolymer transport protein ExbD/TolR RMA_RS02325 PF04607 Region found in RelA / SpoT proteins RMA_RS02325 PF13291 ACT domain RMA_RS02325 PF02824 TGS domain RMA_RS02330 PF07690 Major Facilitator Superfamily RMA_RS02335 PF00529 HlyD membrane-fusion protein of T1SS RMA_RS02340 PF00005 ABC transporter RMA_RS02340 PF00664 ABC transporter transmembrane region RMA_RS02345 PF02774 Semialdehyde dehydrogenase, dimerisation domain RMA_RS02345 PF01118 Semialdehyde dehydrogenase, NAD binding domain RMA_RS02350 PF01230 HIT domain RMA_RS02355 PF10947 Protein of unknown function (DUF2628) RMA_RS02360 PF00227 Proteasome subunit RMA_RS02365 PF00493 MCM P-loop domain RMA_RS02365 PF07724 AAA domain (Cdc48 subfamily) RMA_RS02375 PF13335 Magnesium chelatase, subunit ChlI C-terminal RMA_RS02375 PF01078 Magnesium chelatase, subunit ChlI RMA_RS02410 PF02684 Lipid-A-disaccharide synthetase RMA_RS02420 PF02618 YceG-like family RMA_RS02425 PF01491 Frataxin-like domain RMA_RS02430 PF11019 Protein of unknown function (DUF2608) RMA_RS02465 PF00749 tRNA synthetases class I (E and Q), catalytic domain RMA_RS02470 PF13368 Topoisomerase C-terminal repeat RMA_RS02470 PF01751 Toprim domain RMA_RS02470 PF01131 DNA topoisomerase RMA_RS02470 PF01396 Topoisomerase DNA binding C4 zinc finger RMA_RS02485 PF00578 AhpC/TSA family RMA_RS02485 PF10417 C-terminal domain of 1-Cys peroxiredoxin RMA_RS02490 PF01145 SPFH domain / Band 7 family RMA_RS02500 PF08019 Phosphoethanolamine transferase EptA/EptB RMA_RS02500 PF00884 Sulfatase RMA_RS02505 PF03652 Holliday junction resolvase RMA_RS02510 PF01381 Helix-turn-helix RMA_RS02520 PF08485 Polysaccharide biosynthesis protein C-terminal RMA_RS02520 PF02719 Polysaccharide biosynthesis protein RMA_RS02525 PF02350 UDP-N-acetylglucosamine 2-epimerase RMA_RS02540 PF00535 Glycosyl transferase family 2 RMA_RS02545 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RMA_RS02560 PF00534 Glycosyl transferases group 1 RMA_RS02560 PF00862 Sucrose synthase RMA_RS02580 PF00163 Ribosomal protein S4/S9 N-terminal domain RMA_RS02580 PF01479 S4 domain RMA_RS02585 PF01040 UbiA prenyltransferase family RMA_RS02615 PF01782 RimM N-terminal domain RMA_RS02615 PF05239 PRC-barrel domain RMA_RS02625 PF02609 Exonuclease VII small subunit RMA_RS02645 PF02245 Methylpurine-DNA glycosylase (MPG) RMA_RS02650 PF01809 Putative membrane protein insertion efficiency factor RMA_RS02665 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RMA_RS02670 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RMA_RS02675 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RMA_RS02680 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 RMA_RS02685 PF04932 O-Antigen ligase RMA_RS02690 PF09923 Uncharacterized protein conserved in bacteria (DUF2155) RMA_RS02705 PF00589 Phage integrase family RMA_RS02705 PF02899 Phage integrase, N-terminal SAM-like domain RMA_RS02710 PF17422 Family of unknown function (DUF5410) RMA_RS02715 PF17422 Family of unknown function (DUF5410) RMA_RS02730 PF00795 Carbon-nitrogen hydrolase RMA_RS02740 PF01510 N-acetylmuramoyl-L-alanine amidase RMA_RS02740 PF01471 Putative peptidoglycan binding domain RMA_RS02775 PF01921 tRNA synthetases class I (K) RMA_RS02785 PF00390 Malic enzyme, N-terminal domain RMA_RS02785 PF03949 Malic enzyme, NAD binding domain RMA_RS02785 PF01515 Phosphate acetyl/butaryl transferase RMA_RS02810 PF07690 Major Facilitator Superfamily RMA_RS02845 PF00056 lactate/malate dehydrogenase, NAD binding domain RMA_RS02845 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RMA_RS02870 PF03219 TLC ATP/ADP transporter RMA_RS02875 PF00117 Glutamine amidotransferase class-I RMA_RS02875 PF06418 CTP synthase N-terminus RMA_RS02880 PF02348 Cytidylyltransferase RMA_RS02900 PF00293 NUDIX domain RMA_RS02905 PF00115 Cytochrome C and Quinol oxidase polypeptide I RMA_RS02910 PF01227 GTP cyclohydrolase I RMA_RS02915 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RMA_RS02915 PF03129 Anticodon binding domain RMA_RS02920 PF12728 Helix-turn-helix domain RMA_RS02920 PF02661 Fic/DOC family RMA_RS02930 PF01330 RuvA N terminal domain RMA_RS02930 PF07499 RuvA, C-terminal domain RMA_RS02950 PF05491 RuvB C-terminal winged helix domain RMA_RS02950 PF05496 Holliday junction DNA helicase RuvB P-loop domain RMA_RS02950 PF17864 RuvB AAA lid domain RMA_RS02955 PF00005 ABC transporter RMA_RS02955 PF00664 ABC transporter transmembrane region RMA_RS02960 PF07690 Major Facilitator Superfamily RMA_RS02965 PF07943 Penicillin-binding protein 5, C-terminal domain RMA_RS02965 PF00768 D-alanyl-D-alanine carboxypeptidase RMA_RS02970 PF03330 Lytic transglycolase RMA_RS02975 PF04972 BON domain RMA_RS02980 PF04279 Intracellular septation protein A RMA_RS02990 PF13473 Cupredoxin-like domain RMA_RS02995 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RMA_RS03000 PF00775 Dioxygenase RMA_RS03005 PF00578 AhpC/TSA family RMA_RS03010 PF01343 Peptidase family S49 RMA_RS03010 PF06965 Na+/H+ antiporter 1 RMA_RS03015 PF00692 dUTPase RMA_RS03020 PF01464 Transglycosylase SLT domain RMA_RS03020 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain RMA_RS03030 PF17676 LD-carboxypeptidase C-terminal domain RMA_RS03030 PF02016 LD-carboxypeptidase N-terminal domain RMA_RS03035 PF12705 PD-(D/E)XK nuclease superfamily RMA_RS03045 PF07722 Peptidase C26 RMA_RS03050 PF00115 Cytochrome C and Quinol oxidase polypeptide I RMA_RS03060 PF02790 Cytochrome C oxidase subunit II, transmembrane domain RMA_RS03060 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RMA_RS03065 PF00294 pfkB family carbohydrate kinase RMA_RS03065 PF01467 Cytidylyltransferase-like RMA_RS03070 PF04225 Opacity-associated protein A LysM-like domain RMA_RS03070 PF01551 Peptidase family M23 RMA_RS03075 PF01252 Signal peptidase (SPase) II RMA_RS03085 PF08245 Mur ligase middle domain RMA_RS03090 PF01098 Cell cycle protein RMA_RS03095 PF04101 Glycosyltransferase family 28 C-terminal domain RMA_RS03095 PF03033 Glycosyltransferase family 28 N-terminal domain RMA_RS03115 PF00873 AcrB/AcrD/AcrF family RMA_RS03120 PF00873 AcrB/AcrD/AcrF family RMA_RS03135 PF00873 AcrB/AcrD/AcrF family RMA_RS03145 PF02321 Outer membrane efflux protein RMA_RS03155 PF00534 Glycosyl transferases group 1 RMA_RS03165 PF01678 Diaminopimelate epimerase RMA_RS03170 PF04055 Radical SAM superfamily RMA_RS03170 PF00919 Uncharacterized protein family UPF0004 RMA_RS03175 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RMA_RS03175 PF01409 tRNA synthetases class II core domain (F) RMA_RS03180 PF03483 B3/4 domain RMA_RS03180 PF03147 Ferredoxin-fold anticodon binding domain RMA_RS03180 PF01588 Putative tRNA binding domain RMA_RS03180 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RMA_RS03180 PF03484 tRNA synthetase B5 domain RMA_RS03185 PF02768 DNA polymerase III beta subunit, C-terminal domain RMA_RS03185 PF02767 DNA polymerase III beta subunit, central domain RMA_RS03185 PF00712 DNA polymerase III beta subunit, N-terminal domain RMA_RS03195 PF12100 Domain of unknown function (DUF3576) RMA_RS03200 PF00133 tRNA synthetases class I (I, L, M and V) RMA_RS03200 PF08264 Anticodon-binding domain of tRNA RMA_RS03200 PF13603 Leucyl-tRNA synthetase, Domain 2 RMA_RS03205 PF01612 3'-5' exonuclease RMA_RS03205 PF00570 HRDC domain RMA_RS03210 PF04977 Septum formation initiator RMA_RS03220 PF01255 Putative undecaprenyl diphosphate synthase RMA_RS03225 PF00512 His Kinase A (phospho-acceptor) domain RMA_RS03225 PF00672 HAMP domain RMA_RS03225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RMA_RS03230 PF00072 Response regulator receiver domain RMA_RS03230 PF00486 Transcriptional regulatory protein, C terminal RMA_RS03235 PF01063 Amino-transferase class IV RMA_RS03240 PF00701 Dihydrodipicolinate synthetase family RMA_RS03245 PF01668 SmpB protein RMA_RS03255 PF02629 CoA binding domain RMA_RS03255 PF00549 CoA-ligase RMA_RS03260 PF08442 ATP-grasp domain RMA_RS03260 PF00549 CoA-ligase RMA_RS03285 PF00326 Prolyl oligopeptidase family RMA_RS03290 PF04280 Tim44-like domain RMA_RS03300 PF02033 Ribosome-binding factor A RMA_RS03310 PF06271 RDD family RMA_RS03315 PF13662 Toprim domain RMA_RS03315 PF02132 RecR protein RMA_RS03330 PF01513 ATP-NAD kinase RMA_RS03335 PF17770 Ribonuclease J C-terminal domain RMA_RS03335 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain RMA_RS03335 PF12706 Beta-lactamase superfamily domain RMA_RS03340 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RMA_RS03340 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RMA_RS03355 PF12697 Alpha/beta hydrolase family RMA_RS03360 PF07992 Pyridine nucleotide-disulphide oxidoreductase RMA_RS03370 PF00171 Aldehyde dehydrogenase family RMA_RS03380 PF00535 Glycosyl transferase family 2 RMA_RS03385 PF13361 UvrD-like helicase C-terminal domain RMA_RS03385 PF00580 UvrD/REP helicase N-terminal domain RMA_RS03400 PF00291 Pyridoxal-phosphate dependent enzyme RMA_RS03400 PF00585 C-terminal regulatory domain of Threonine dehydratase RMA_RS03405 PF00004 ATPase family associated with various cellular activities (AAA) RMA_RS03405 PF05362 Lon protease (S16) C-terminal proteolytic domain RMA_RS03405 PF02190 ATP-dependent protease La (LON) substrate-binding domain RMA_RS03425 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus RMA_RS03425 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RMA_RS03430 PF00132 Bacterial transferase hexapeptide (six repeats) RMA_RS03435 PF00132 Bacterial transferase hexapeptide (six repeats) RMA_RS03440 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RMA_RS03440 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RMA_RS03445 PF07992 Pyridine nucleotide-disulphide oxidoreductase RMA_RS03490 PF03477 ATP cone domain RMA_RS03490 PF02867 Ribonucleotide reductase, barrel domain RMA_RS03490 PF00317 Ribonucleotide reductase, all-alpha domain RMA_RS03500 PF00268 Ribonucleotide reductase, small chain RMA_RS03505 PF00805 Pentapeptide repeats (8 copies) RMA_RS03510 PF00805 Pentapeptide repeats (8 copies) RMA_RS03535 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RMA_RS03535 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RMA_RS03535 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RMA_RS03535 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RMA_RS03540 PF00005 ABC transporter RMA_RS03545 PF03968 OstA-like protein RMA_RS03550 PF06835 Lipopolysaccharide-assembly, LptC-related RMA_RS03555 PF00571 CBS domain RMA_RS03555 PF01380 SIS domain RMA_RS03560 PF00575 S1 RNA binding domain RMA_RS03560 PF03725 3' exoribonuclease family, domain 2 RMA_RS03560 PF01138 3' exoribonuclease family, domain 1 RMA_RS03560 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RMA_RS03560 PF00013 KH domain RMA_RS03565 PF00312 Ribosomal protein S15 RMA_RS03570 PF01509 TruB family pseudouridylate synthase (N terminal domain) RMA_RS03570 PF16198 tRNA pseudouridylate synthase B C-terminal domain RMA_RS03575 PF03219 TLC ATP/ADP transporter RMA_RS03585 PF12574 120 KDa Rickettsia surface antigen RMA_RS03590 PF01381 Helix-turn-helix RMA_RS03595 PF03631 Virulence factor BrkB RMA_RS03605 PF02578 Multi-copper polyphenol oxidoreductase laccase RMA_RS03610 PF01327 Polypeptide deformylase RMA_RS03625 PF00596 Class II Aldolase and Adducin N-terminal domain RMA_RS03635 PF00391 PEP-utilising enzyme, mobile domain RMA_RS03635 PF02896 PEP-utilising enzyme, TIM barrel domain RMA_RS03635 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RMA_RS03645 PF09825 Biotin-protein ligase, N terminal RMA_RS03650 PF02632 BioY family RMA_RS03655 PF02875 Mur ligase family, glutamate ligase domain RMA_RS03655 PF08245 Mur ligase middle domain RMA_RS03660 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RMA_RS03660 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RMA_RS03670 PF02237 Biotin protein ligase C terminal domain RMA_RS03670 PF03099 Biotin/lipoate A/B protein ligase family RMA_RS03730 PF10097 Predicted membrane protein (DUF2335) RMA_RS03735 PF05198 Translation initiation factor IF-3, N-terminal domain RMA_RS03735 PF00707 Translation initiation factor IF-3, C-terminal domain RMA_RS03740 PF02817 e3 binding domain RMA_RS03740 PF00364 Biotin-requiring enzyme RMA_RS03740 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RMA_RS03745 PF00472 RF-1 domain RMA_RS03745 PF03462 PCRF domain RMA_RS03750 PF17768 RecJ OB domain RMA_RS03750 PF01368 DHH family RMA_RS03750 PF02272 DHHA1 domain RMA_RS03755 PF13847 Methyltransferase domain RMA_RS03760 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RMA_RS03760 PF07498 Rho termination factor, N-terminal domain RMA_RS03760 PF07497 Rho termination factor, RNA-binding domain RMA_RS03765 PF01343 Peptidase family S49 RMA_RS03770 PF00216 Bacterial DNA-binding protein RMA_RS03815 PF13356 Arm DNA-binding domain RMA_RS03815 PF00589 Phage integrase family RMA_RS03820 PF13274 Protein of unknown function (DUF4065) RMA_RS03825 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system RMA_RS03865 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer RMA_RS03885 PF06834 TraU protein RMA_RS03890 PF09673 Type-F conjugative transfer system pilin assembly protein RMA_RS03895 PF06986 Type-1V conjugative transfer system mating pair stabilisation RMA_RS03905 PF06122 Conjugative relaxosome accessory transposon protein RMA_RS03925 PF04754 Putative transposase, YhgA-like RMA_RS03930 PF17841 BID domain of Bartonella effector protein (Bep) RMA_RS03930 PF03389 MobA/MobL family RMA_RS03930 PF01443 Viral (Superfamily 1) RNA helicase RMA_RS03935 PF01548 Transposase RMA_RS03935 PF02371 Transposase IS116/IS110/IS902 family RMA_RS03950 PF01695 IstB-like ATP binding protein RMA_RS03975 PF01527 Transposase RMA_RS03980 PF00665 Integrase core domain RMA_RS03980 PF13333 Integrase core domain RMA_RS03980 PF13276 HTH-like domain RMA_RS03995 PF01695 IstB-like ATP binding protein RMA_RS04010 PF07733 Bacterial DNA polymerase III alpha NTPase domain RMA_RS04010 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RMA_RS04010 PF02811 PHP domain RMA_RS04020 PF04607 Region found in RelA / SpoT proteins RMA_RS04020 PF02824 TGS domain RMA_RS04020 PF13291 ACT domain RMA_RS04030 PF02086 D12 class N6 adenine-specific DNA methyltransferase RMA_RS04050 PF02224 Cytidylate kinase RMA_RS04055 PF00575 S1 RNA binding domain RMA_RS04060 PF00574 Clp protease RMA_RS04095 PF01070 FMN-dependent dehydrogenase RMA_RS04115 PF06250 YhcG PDDEXK nuclease domain RMA_RS04115 PF17761 DUF1016 N-terminal domain RMA_RS04150 PF12804 MobA-like NTP transferase domain RMA_RS04150 PF00132 Bacterial transferase hexapeptide (six repeats) RMA_RS04155 PF01709 Transcriptional regulator RMA_RS04160 PF00444 Ribosomal protein L36 RMA_RS04180 PF10811 Protein of unknown function (DUF2532) RMA_RS04215 PF08241 Methyltransferase domain RMA_RS04220 PF07992 Pyridine nucleotide-disulphide oxidoreductase RMA_RS04220 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RMA_RS04225 PF01812 5-formyltetrahydrofolate cyclo-ligase family RMA_RS04235 PF01612 3'-5' exonuclease RMA_RS04235 PF00570 HRDC domain RMA_RS04245 PF00231 ATP synthase RMA_RS04260 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RMA_RS04260 PF00672 HAMP domain RMA_RS04260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RMA_RS04260 PF00512 His Kinase A (phospho-acceptor) domain RMA_RS04260 PF01627 Hpt domain RMA_RS04260 PF00072 Response regulator receiver domain RMA_RS04270 PF17676 LD-carboxypeptidase C-terminal domain RMA_RS04270 PF02016 LD-carboxypeptidase N-terminal domain RMA_RS04275 PF03900 Porphobilinogen deaminase, C-terminal domain RMA_RS04275 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RMA_RS04295 PF00579 tRNA synthetases class I (W and Y) RMA_RS04305 PF10116 Protein required for attachment to host cells RMA_RS04315 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RMA_RS04335 PF01810 LysE type translocator RMA_RS04340 PF07690 Major Facilitator Superfamily RMA_RS04355 PF03219 TLC ATP/ADP transporter RMA_RS04365 PF04932 O-Antigen ligase RMA_RS04370 PF00348 Polyprenyl synthetase RMA_RS04385 PF00557 Metallopeptidase family M24 RMA_RS04385 PF01321 Creatinase/Prolidase N-terminal domain RMA_RS04390 PF13520 Amino acid permease RMA_RS04405 PF01521 Iron-sulphur cluster biosynthesis RMA_RS04410 PF01592 NifU-like N terminal domain RMA_RS04415 PF00266 Aminotransferase class-V RMA_RS04420 PF00266 Aminotransferase class-V RMA_RS04425 PF02082 Transcriptional regulator RMA_RS04450 PF06691 Protein of unknown function (DUF1189) RMA_RS04500 PF00361 Proton-conducting membrane transporter RMA_RS04505 PF18640 LepB N-terminal domain RMA_RS04510 PF00490 Delta-aminolevulinic acid dehydratase RMA_RS04520 PF18074 Primosomal protein N C-terminal domain RMA_RS04520 PF00271 Helicase conserved C-terminal domain RMA_RS04520 PF00270 DEAD/DEAH box helicase RMA_RS04520 PF18319 PriA DNA helicase Cys-rich region (CRR) domain RMA_RS04520 PF17764 3′ DNA-binding domain (3′BD) RMA_RS04525 PF02441 Flavoprotein RMA_RS04530 PF03796 DnaB-like helicase C terminal domain RMA_RS04530 PF00772 DnaB-like helicase N terminal domain RMA_RS04545 PF01479 S4 domain RMA_RS04545 PF00849 RNA pseudouridylate synthase RMA_RS04560 PF18073 Rubredoxin metal binding domain RMA_RS04570 PF02565 Recombination protein O C terminal RMA_RS04570 PF11967 Recombination protein O N terminal RMA_RS04580 PF00814 Glycoprotease family RMA_RS04590 PF00009 Elongation factor Tu GTP binding domain RMA_RS04590 PF04760 Translation initiation factor IF-2, N-terminal region RMA_RS04590 PF11987 Translation-initiation factor 2 RMA_RS04595 PF00575 S1 RNA binding domain RMA_RS04595 PF08529 NusA N-terminal domain RMA_RS04595 PF13184 NusA-like KH domain RMA_RS04600 PF17384 RimP C-terminal SH3 domain RMA_RS04600 PF02576 RimP N-terminal domain RMA_RS04615 PF01479 S4 domain RMA_RS04615 PF01728 FtsJ-like methyltransferase RMA_RS04620 PF00579 tRNA synthetases class I (W and Y) RMA_RS04720 PF01835 MG2 domain RMA_RS04720 PF17962 Bacterial macroglobulin domain 6 RMA_RS04720 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain RMA_RS04720 PF11974 Bacterial alpha-2-macroglobulin MG3 domain RMA_RS04720 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain RMA_RS04720 PF00207 Alpha-2-macroglobulin family RMA_RS04775 PF01494 FAD binding domain RMA_RS04785 PF02954 Bacterial regulatory protein, Fis family RMA_RS04785 PF00072 Response regulator receiver domain RMA_RS04785 PF00158 Sigma-54 interaction domain RMA_RS04800 PF00905 Penicillin binding protein transpeptidase domain RMA_RS04800 PF03717 Penicillin-binding Protein dimerisation domain RMA_RS04815 PF03717 Penicillin-binding Protein dimerisation domain RMA_RS04815 PF00905 Penicillin binding protein transpeptidase domain RMA_RS04825 PF01795 MraW methylase family RMA_RS04830 PF02381 MraZ protein, putative antitoxin-like RMA_RS04845 PF00474 Sodium:solute symporter family RMA_RS04860 PF08459 UvrC Helix-hairpin-helix N-terminal RMA_RS04860 PF01541 GIY-YIG catalytic domain RMA_RS04860 PF02151 UvrB/uvrC motif RMA_RS04865 PF04314 Copper chaperone PCu(A)C RMA_RS04880 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RMA_RS04880 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RMA_RS04925 PF00023 Ankyrin repeat RMA_RS04935 PF07516 SecA Wing and Scaffold domain RMA_RS04935 PF01043 SecA preprotein cross-linking domain RMA_RS04935 PF07517 SecA DEAD-like domain RMA_RS04935 PF02810 SEC-C motif RMA_RS04945 PF01648 4'-phosphopantetheinyl transferase superfamily RMA_RS04950 PF01192 RNA polymerase Rpb6 RMA_RS04955 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RMA_RS04960 PF01751 Toprim domain RMA_RS04960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RMA_RS04960 PF00986 DNA gyrase B subunit, carboxyl terminus RMA_RS04960 PF00204 DNA gyrase B RMA_RS04965 PF13344 Haloacid dehalogenase-like hydrolase RMA_RS04965 PF00293 NUDIX domain RMA_RS04975 PF03448 MgtE intracellular N domain RMA_RS04975 PF01769 Divalent cation transporter RMA_RS04975 PF00571 CBS domain RMA_RS04985 PF02824 TGS domain RMA_RS04985 PF04607 Region found in RelA / SpoT proteins RMA_RS04985 PF13291 ACT domain RMA_RS05015 PF02699 Preprotein translocase subunit RMA_RS05020 PF02355 Protein export membrane protein RMA_RS05025 PF02630 SCO1/SenC RMA_RS05030 PF03100 CcmE RMA_RS05035 PF00719 Inorganic pyrophosphatase RMA_RS05040 PF03023 Lipid II flippase MurJ RMA_RS05045 PF05857 TraX protein RMA_RS05055 PF00271 Helicase conserved C-terminal domain RMA_RS05055 PF17191 RecG wedge domain RMA_RS05055 PF00270 DEAD/DEAH box helicase RMA_RS05070 PF01144 Coenzyme A transferase RMA_RS05090 PF00953 Glycosyl transferase family 4 RMA_RS05095 PF02875 Mur ligase family, glutamate ligase domain RMA_RS05095 PF08245 Mur ligase middle domain RMA_RS05095 PF01225 Mur ligase family, catalytic domain RMA_RS05100 PF02875 Mur ligase family, glutamate ligase domain RMA_RS05100 PF08245 Mur ligase middle domain RMA_RS05100 PF01225 Mur ligase family, catalytic domain RMA_RS05105 PF17757 UvrB interaction domain RMA_RS05105 PF03461 TRCF domain RMA_RS05105 PF00271 Helicase conserved C-terminal domain RMA_RS05105 PF02559 CarD-like/TRCF domain RMA_RS05105 PF00270 DEAD/DEAH box helicase RMA_RS05115 PF00581 Rhodanese-like domain RMA_RS05120 PF11638 DnaA N-terminal domain RMA_RS05120 PF08299 Bacterial dnaA protein helix-turn-helix RMA_RS05120 PF00308 Bacterial dnaA protein RMA_RS05160 PF01926 50S ribosome-binding GTPase RMA_RS05160 PF06071 Protein of unknown function (DUF933) RMA_RS05175 PF01195 Peptidyl-tRNA hydrolase RMA_RS05180 PF14693 Ribosomal protein TL5, C-terminal domain RMA_RS05180 PF01386 Ribosomal L25p family RMA_RS05190 PF04055 Radical SAM superfamily RMA_RS05195 PF01632 Ribosomal protein L35 RMA_RS05200 PF00453 Ribosomal protein L20 RMA_RS05205 PF00468 Ribosomal protein L34 RMA_RS05210 PF00825 Ribonuclease P RMA_RS05240 PF01544 CorA-like Mg2+ transporter protein RMA_RS05280 PF00672 HAMP domain RMA_RS05280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RMA_RS05280 PF00512 His Kinase A (phospho-acceptor) domain RMA_RS05285 PF01165 Ribosomal protein S21 RMA_RS05305 PF00133 tRNA synthetases class I (I, L, M and V) RMA_RS05305 PF08264 Anticodon-binding domain of tRNA RMA_RS05325 PF18140 Propionyl-coenzyme A carboxylase BT domain RMA_RS05325 PF00364 Biotin-requiring enzyme RMA_RS05325 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RMA_RS05325 PF00289 Biotin carboxylase, N-terminal domain RMA_RS05325 PF02785 Biotin carboxylase C-terminal domain RMA_RS05330 PF01039 Carboxyl transferase domain RMA_RS05345 PF01553 Acyltransferase RMA_RS05345 PF00501 AMP-binding enzyme RMA_RS05355 PF00950 ABC 3 transport family RMA_RS05365 PF00749 tRNA synthetases class I (E and Q), catalytic domain RMA_RS05385 PF04607 Region found in RelA / SpoT proteins RMA_RS05385 PF13291 ACT domain RMA_RS05385 PF02824 TGS domain RMA_RS05390 PF02824 TGS domain RMA_RS05390 PF04607 Region found in RelA / SpoT proteins RMA_RS05390 PF13291 ACT domain RMA_RS05395 PF00118 TCP-1/cpn60 chaperonin family RMA_RS05400 PF00166 Chaperonin 10 Kd subunit RMA_RS05435 PF01138 3' exoribonuclease family, domain 1 RMA_RS05435 PF03725 3' exoribonuclease family, domain 2 RMA_RS05440 PF01025 GrpE RMA_RS05445 PF01594 AI-2E family transporter RMA_RS05480 PF01649 Ribosomal protein S20 RMA_RS05485 PF01196 Ribosomal protein L17 RMA_RS05490 PF01000 RNA polymerase Rpb3/RpoA insert domain RMA_RS05490 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RMA_RS05490 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RMA_RS05495 PF00411 Ribosomal protein S11 RMA_RS05500 PF00416 Ribosomal protein S13/S18 RMA_RS05505 PF05191 Adenylate kinase, active site lid RMA_RS05510 PF00344 SecY translocase RMA_RS05515 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RMA_RS05520 PF00327 Ribosomal protein L30p/L7e RMA_RS05525 PF03719 Ribosomal protein S5, C-terminal domain RMA_RS05525 PF00333 Ribosomal protein S5, N-terminal domain RMA_RS05530 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RMA_RS05535 PF00347 Ribosomal protein L6 RMA_RS05540 PF00410 Ribosomal protein S8 RMA_RS05545 PF00253 Ribosomal protein S14p/S29e RMA_RS05550 PF00281 Ribosomal protein L5 RMA_RS05550 PF00673 ribosomal L5P family C-terminus RMA_RS05555 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RMA_RS05555 PF00467 KOW motif RMA_RS05560 PF00238 Ribosomal protein L14p/L23e RMA_RS05565 PF00366 Ribosomal protein S17 RMA_RS05570 PF00831 Ribosomal L29 protein RMA_RS05575 PF00252 Ribosomal protein L16p/L10e RMA_RS05580 PF00189 Ribosomal protein S3, C-terminal domain RMA_RS05580 PF07650 KH domain RMA_RS05585 PF00237 Ribosomal protein L22p/L17e RMA_RS05590 PF00203 Ribosomal protein S19 RMA_RS05595 PF00181 Ribosomal Proteins L2, RNA binding domain RMA_RS05595 PF03947 Ribosomal Proteins L2, C-terminal domain RMA_RS05600 PF00276 Ribosomal protein L23 RMA_RS05605 PF00573 Ribosomal protein L4/L1 family RMA_RS05610 PF00297 Ribosomal protein L3 RMA_RS05615 PF00338 Ribosomal protein S10p/S20e RMA_RS05620 PF03144 Elongation factor Tu domain 2 RMA_RS05620 PF00009 Elongation factor Tu GTP binding domain RMA_RS05620 PF03143 Elongation factor Tu C-terminal domain RMA_RS05635 PF08032 RNA 2'-O ribose methyltransferase substrate binding RMA_RS05635 PF00588 SpoU rRNA Methylase family RMA_RS05645 PF10415 Fumarase C C-terminus RMA_RS05645 PF00206 Lyase RMA_RS05660 PF12327 FtsZ family, C-terminal domain RMA_RS05660 PF00091 Tubulin/FtsZ family, GTPase domain RMA_RS05680 PF01106 NifU-like domain RMA_RS05685 PF07690 Major Facilitator Superfamily RMA_RS05690 PF00270 DEAD/DEAH box helicase RMA_RS05690 PF00271 Helicase conserved C-terminal domain RMA_RS05695 PF00313 'Cold-shock' DNA-binding domain RMA_RS05705 PF00398 Ribosomal RNA adenine dimethylase RMA_RS05725 PF13742 OB-fold nucleic acid binding domain RMA_RS05725 PF02601 Exonuclease VII, large subunit RMA_RS05740 PF03372 Endonuclease/Exonuclease/phosphatase family RMA_RS05750 PF01926 50S ribosome-binding GTPase RMA_RS05750 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RMA_RS05775 PF03109 ABC1 family RMA_RS05780 PF01209 ubiE/COQ5 methyltransferase family RMA_RS05785 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RMA_RS05785 PF06827 Zinc finger found in FPG and IleRS RMA_RS05785 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RMA_RS05825 PF01026 TatD related DNase RMA_RS05830 PF09334 tRNA synthetases class I (M) RMA_RS05830 PF08264 Anticodon-binding domain of tRNA RMA_RS05835 PF02223 Thymidylate kinase RMA_RS05840 PF07690 Major Facilitator Superfamily RMA_RS05845 PF01040 UbiA prenyltransferase family RMA_RS05855 PF00133 tRNA synthetases class I (I, L, M and V) RMA_RS05855 PF08264 Anticodon-binding domain of tRNA RMA_RS05860 PF04991 LicD family RMA_RS05865 PF04991 LicD family RMA_RS05880 PF02646 RmuC family RMA_RS05925 PF06689 ClpX C4-type zinc finger RMA_RS05925 PF10431 C-terminal, D2-small domain, of ClpB protein RMA_RS05925 PF07724 AAA domain (Cdc48 subfamily) RMA_RS05935 PF06508 Queuosine biosynthesis protein QueC RMA_RS05950 PF00005 ABC transporter RMA_RS05950 PF00664 ABC transporter transmembrane region RMA_RS05955 PF10880 Protein of unknown function (DUF2673) RMA_RS05960 PF07690 Major Facilitator Superfamily RMA_RS05965 PF02687 FtsX-like permease family RMA_RS05965 PF12704 MacB-like periplasmic core domain RMA_RS05970 PF00005 ABC transporter RMA_RS05980 PF03471 Transporter associated domain RMA_RS05980 PF00571 CBS domain RMA_RS05980 PF01595 Cyclin M transmembrane N-terminal domain RMA_RS05985 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal RMA_RS05985 PF01578 Cytochrome C assembly protein RMA_RS06000 PF03797 Autotransporter beta-domain RMA_RS06000 PF12334 Rickettsia outer membrane protein B RMA_RS06005 PF02824 TGS domain RMA_RS06005 PF13291 ACT domain RMA_RS06005 PF04607 Region found in RelA / SpoT proteins RMA_RS06015 PF00933 Glycosyl hydrolase family 3 N terminal domain RMA_RS06025 PF00216 Bacterial DNA-binding protein RMA_RS06030 PF00578 AhpC/TSA family RMA_RS06040 PF02606 Tetraacyldisaccharide-1-P 4'-kinase RMA_RS06045 PF01551 Peptidase family M23 RMA_RS06055 PF00533 BRCA1 C Terminus (BRCT) domain RMA_RS06055 PF01653 NAD-dependent DNA ligase adenylation domain RMA_RS06055 PF03120 NAD-dependent DNA ligase OB-fold domain RMA_RS06055 PF12826 Helix-hairpin-helix motif RMA_RS06060 PF01702 Queuine tRNA-ribosyltransferase RMA_RS06090 PF05071 NADH ubiquinone oxidoreductase subunit NDUFA12 RMA_RS06095 PF00075 RNase H RMA_RS06110 PF01121 Dephospho-CoA kinase RMA_RS06115 PF00929 Exonuclease RMA_RS06120 PF02104 SURF1 family RMA_RS06125 PF12705 PD-(D/E)XK nuclease superfamily RMA_RS06125 PF00580 UvrD/REP helicase N-terminal domain RMA_RS06125 PF13361 UvrD-like helicase C-terminal domain RMA_RS06135 PF00698 Acyl transferase domain RMA_RS06190 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus RMA_RS06195 PF03219 TLC ATP/ADP transporter RMA_RS06215 PF00571 CBS domain RMA_RS06215 PF03471 Transporter associated domain RMA_RS06220 PF02130 Uncharacterized protein family UPF0054 RMA_RS06230 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family RMA_RS06230 PF04055 Radical SAM superfamily RMA_RS06235 PF00464 Serine hydroxymethyltransferase RMA_RS06240 PF02230 Phospholipase/Carboxylesterase RMA_RS06245 PF00462 Glutaredoxin RMA_RS06250 PF10576 Iron-sulfur binding domain of endonuclease III RMA_RS06250 PF00730 HhH-GPD superfamily base excision DNA repair protein RMA_RS06250 PF00633 Helix-hairpin-helix motif RMA_RS06285 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RMA_RS06290 PF13458 Periplasmic binding protein RMA_RS06295 PF02416 mttA/Hcf106 family RMA_RS06300 PF04608 Phosphatidylglycerophosphatase A RMA_RS06305 PF00829 Ribosomal prokaryotic L21 protein RMA_RS06310 PF01016 Ribosomal L27 protein RMA_RS06315 PF00696 Amino acid kinase family RMA_RS06345 PF00083 Sugar (and other) transporter RMA_RS06345 PF08946 Osmosensory transporter coiled coil RMA_RS06350 PF05164 Cell division protein ZapA RMA_RS06355 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) RMA_RS06360 PF13464 Domain of unknown function (DUF4115) RMA_RS06365 PF05088 Bacterial NAD-glutamate dehydrogenase RMA_RS06370 PF12631 MnmE helical domain RMA_RS06370 PF01926 50S ribosome-binding GTPase RMA_RS06370 PF10396 GTP-binding protein TrmE N-terminus RMA_RS06375 PF17544 Family of unknown function (DUF5460) RMA_RS06390 PF07690 Major Facilitator Superfamily RMA_RS06400 PF00154 recA bacterial DNA recombination protein RMA_RS06410 PF00550 Phosphopantetheine attachment site RMA_RS06415 PF02801 Beta-ketoacyl synthase, C-terminal domain RMA_RS06415 PF00109 Beta-ketoacyl synthase, N-terminal domain RMA_RS06420 PF12848 ABC transporter RMA_RS06420 PF16326 ABC transporter C-terminal domain RMA_RS06420 PF00005 ABC transporter RMA_RS06435 PF13635 Domain of unknown function (DUF4143) RMA_RS06435 PF13173 AAA domain RMA_RS06440 PF00625 Guanylate kinase RMA_RS06445 PF01381 Helix-turn-helix RMA_RS06470 PF00691 OmpA family RMA_RS06475 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RMA_RS06475 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RMA_RS06480 PF01783 Ribosomal L32p protein family RMA_RS06490 PF00448 SRP54-type protein, GTPase domain RMA_RS06490 PF02881 SRP54-type protein, helical bundle domain RMA_RS06495 PF01367 5'-3' exonuclease, C-terminal SAM fold RMA_RS06495 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RMA_RS06495 PF00476 DNA polymerase family A RMA_RS06500 PF00438 S-adenosylmethionine synthetase, N-terminal domain RMA_RS06500 PF02772 S-adenosylmethionine synthetase, central domain RMA_RS06500 PF02773 S-adenosylmethionine synthetase, C-terminal domain RMA_RS06505 PF02772 S-adenosylmethionine synthetase, central domain RMA_RS06505 PF00438 S-adenosylmethionine synthetase, N-terminal domain RMA_RS06505 PF02773 S-adenosylmethionine synthetase, C-terminal domain RMA_RS06510 PF02772 S-adenosylmethionine synthetase, central domain RMA_RS06510 PF02773 S-adenosylmethionine synthetase, C-terminal domain RMA_RS06510 PF00438 S-adenosylmethionine synthetase, N-terminal domain RMA_RS06535 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RMA_RS06535 PF14579 Helix-hairpin-helix motif RMA_RS06535 PF02811 PHP domain RMA_RS06535 PF07733 Bacterial DNA polymerase III alpha NTPase domain RMA_RS06540 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RMA_RS06540 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RMA_RS06540 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RMA_RS06550 PF07690 Major Facilitator Superfamily RMA_RS06555 PF00902 Sec-independent protein translocase protein (TatC) RMA_RS06560 PF02403 Seryl-tRNA synthetase N-terminal domain RMA_RS06560 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RMA_RS06565 PF03135 CagE, TrbE, VirB family, component of type IV transporter system RMA_RS06575 PF03741 Integral membrane protein TerC family RMA_RS06585 PF10119 Predicted methyltransferase regulatory domain RMA_RS06585 PF13847 Methyltransferase domain RMA_RS06590 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system RMA_RS06595 PF01381 Helix-turn-helix RMA_RS06595 PF00145 C-5 cytosine-specific DNA methylase RMA_RS06600 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 RMA_RS06605 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RMA_RS06610 PF00361 Proton-conducting membrane transporter RMA_RS06610 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RMA_RS06615 PF00361 Proton-conducting membrane transporter RMA_RS06625 PF00005 ABC transporter RMA_RS06630 PF12838 4Fe-4S dicluster domain RMA_RS06635 PF00146 NADH dehydrogenase RMA_RS06640 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal RMA_RS06640 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RMA_RS06640 PF00384 Molybdopterin oxidoreductase RMA_RS06650 PF00330 Aconitase family (aconitate hydratase) RMA_RS06650 PF00694 Aconitase C-terminal domain RMA_RS06655 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RMA_RS06660 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RMA_RS06660 PF02874 ATP synthase alpha/beta family, beta-barrel domain RMA_RS06665 PF00231 ATP synthase RMA_RS06670 PF00306 ATP synthase alpha/beta chain, C terminal domain RMA_RS06670 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RMA_RS06670 PF02874 ATP synthase alpha/beta family, beta-barrel domain RMA_RS06675 PF00213 ATP synthase delta (OSCP) subunit RMA_RS06680 PF07992 Pyridine nucleotide-disulphide oxidoreductase RMA_RS06680 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RMA_RS06710 PF17092 Penicillin-binding protein OB-like domain RMA_RS06710 PF00912 Transglycosylase RMA_RS06710 PF00905 Penicillin binding protein transpeptidase domain RMA_RS06715 PF01938 TRAM domain RMA_RS06715 PF00919 Uncharacterized protein family UPF0004 RMA_RS06715 PF04055 Radical SAM superfamily RMA_RS06745 PF00999 Sodium/hydrogen exchanger family RMA_RS06745 PF02254 TrkA-N domain RMA_RS06755 PF01722 BolA-like protein RMA_RS06835 PF01176 Translation initiation factor 1A / IF-1 RMA_RS06840 PF02545 Maf-like protein RMA_RS06845 PF01258 Prokaryotic dksA/traR C4-type zinc finger RMA_RS06850 PF02899 Phage integrase, N-terminal SAM-like domain RMA_RS06850 PF00589 Phage integrase family RMA_RS06860 PF13091 PLD-like domain RMA_RS06875 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase RMA_RS06885 PF03797 Autotransporter beta-domain RMA_RS06900 PF09397 Ftsk gamma domain RMA_RS06900 PF01580 FtsK/SpoIIIE family RMA_RS06900 PF13491 4TM region of DNA translocase FtsK/SpoIIIE RMA_RS06900 PF17854 FtsK alpha domain RMA_RS06915 PF00557 Metallopeptidase family M24 RMA_RS06930 PF00953 Glycosyl transferase family 4 RMA_RS06935 PF05258 Dna[CI] antecedent, DciA RMA_RS06940 PF13505 Outer membrane protein beta-barrel domain RMA_RS06945 PF13505 Outer membrane protein beta-barrel domain RMA_RS06950 PF12838 4Fe-4S dicluster domain RMA_RS06950 PF11953 Domain of unknown function (DUF3470) RMA_RS06955 PF01578 Cytochrome C assembly protein RMA_RS06960 PF14437 MafB19-like deaminase RMA_RS06965 PF16916 Dimerisation domain of Zinc Transporter RMA_RS06965 PF01545 Cation efflux family RMA_RS06970 PF16998 17 kDa outer membrane surface antigen RMA_RS06970 PF05433 Glycine zipper 2TM domain RMA_RS06980 PF00005 ABC transporter RMA_RS07010 PF17760 UvrA interaction domain RMA_RS07010 PF17755 UvrA DNA-binding domain RMA_RS07015 PF00436 Single-strand binding protein family RMA_RS07045 PF02594 Uncharacterised ACR, YggU family COG1872 RMA_RS07050 PF00183 Hsp90 protein RMA_RS07055 PF00155 Aminotransferase class I and II RMA_RS07065 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RMA_RS07065 PF05697 Bacterial trigger factor protein (TF) RMA_RS07065 PF05698 Bacterial trigger factor protein (TF) C-terminus RMA_RS07070 PF01018 GTP1/OBG RMA_RS07070 PF01926 50S ribosome-binding GTPase RMA_RS07075 PF00285 Citrate synthase, C-terminal domain RMA_RS07090 PF03167 Uracil DNA glycosylase superfamily RMA_RS07095 PF01479 S4 domain RMA_RS07095 PF00849 RNA pseudouridylate synthase RMA_RS07115 PF02390 Putative methyltransferase RMA_RS07115 PF17827 PrmC N-terminal domain RMA_RS07115 PF05175 Methyltransferase small domain RMA_RS07120 PF03481 Putative GTP-binding controlling metal-binding RMA_RS07120 PF01300 Telomere recombination RMA_RS07125 PF02092 Glycyl-tRNA synthetase beta subunit RMA_RS07125 PF05746 DALR anticodon binding domain RMA_RS07130 PF02091 Glycyl-tRNA synthetase alpha subunit RMA_RS07135 PF01850 PIN domain RMA_RS07145 PF02677 Epoxyqueuosine reductase QueH RMA_RS07165 PF08676 MutL C terminal dimerisation domain RMA_RS07165 PF01119 DNA mismatch repair protein, C-terminal domain RMA_RS07170 PF00471 Ribosomal protein L33 RMA_RS07175 PF00886 Ribosomal protein S16 RMA_RS07185 PF01510 N-acetylmuramoyl-L-alanine amidase RMA_RS07190 PF03099 Biotin/lipoate A/B protein ligase family RMA_RS07200 PF06965 Na+/H+ antiporter 1 RMA_RS07235 PF01546 Peptidase family M20/M25/M40 RMA_RS07235 PF07687 Peptidase dimerisation domain RMA_RS07245 PF04364 DNA polymerase III chi subunit, HolC RMA_RS07250 PF03739 Lipopolysaccharide export system permease LptF/LptG RMA_RS07255 PF04221 RelB antitoxin RMA_RS07270 PF00005 ABC transporter RMA_RS07295 PF02575 YbaB/EbfC DNA-binding family RMA_RS07300 PF12169 DNA polymerase III subunits gamma and tau domain III RMA_RS07305 PF03548 Outer membrane lipoprotein carrier protein LolA RMA_RS07310 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RMA_RS07310 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RMA_RS07315 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch RMA_RS07320 PF01272 Transcription elongation factor, GreA/GreB, C-term RMA_RS07320 PF03449 Transcription elongation factor, N-terminal RMA_RS07330 PF08275 DNA primase catalytic core, N-terminal domain RMA_RS07330 PF13662 Toprim domain RMA_RS07330 PF01807 CHC2 zinc finger RMA_RS07335 PF04542 Sigma-70 region 2 RMA_RS07335 PF04545 Sigma-70, region 4 RMA_RS07335 PF04539 Sigma-70 region 3 RMA_RS07335 PF00140 Sigma-70 factor, region 1.2 RMA_RS07335 PF04546 Sigma-70, non-essential region RMA_RS07335 PF03979 Sigma-70 factor, region 1.1 RMA_RS07340 PF01416 tRNA pseudouridine synthase RMA_RS07345 PF02272 DHHA1 domain RMA_RS07345 PF01411 tRNA synthetases class II (A) RMA_RS07345 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RMA_RS07355 PF17460 Uncharacterized protein RP854 RMA_RS07360 PF17542 Uncharacterized RP853 RMA_RS07365 PF07690 Major Facilitator Superfamily RMA_RS07375 PF08946 Osmosensory transporter coiled coil RMA_RS07375 PF00083 Sugar (and other) transporter RMA_RS07380 PF01218 Coproporphyrinogen III oxidase RMA_RS07395 PF03653 Uncharacterised protein family (UPF0093) RMA_RS07400 PF00762 Ferrochelatase RMA_RS07405 PF01208 Uroporphyrinogen decarboxylase (URO-D) RMA_RS07450 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RMA_RS07450 PF00132 Bacterial transferase hexapeptide (six repeats) RMA_RS07640 PF02384 N-6 DNA Methylase RMA_RS07640 PF12161 HsdM N-terminal domain