RMA_RS00015 SM00382 ATPases associated with a variety of cellular activities RMA_RS00110 SM00869 Autotransporter beta-domain RMA_RS00195 SM01058 CarD-like/TRCF domain RMA_RS00235 SM00905 Dihydroneopterin aldolase RMA_RS00345 SM00382 ATPases associated with a variety of cellular activities RMA_RS00345 SM01086 C-terminal, D2-small domain, of ClpB protein RMA_RS00390 SM00382 ATPases associated with a variety of cellular activities RMA_RS00485 SM00562 RMA_RS00485 RMA_RS00490 SM01228 RMA_RS00490 RMA_RS00505 SM00470 ParB-like nuclease domain RMA_RS00510 SM00382 ATPases associated with a variety of cellular activities RMA_RS00555 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RMA_RS00560 SM00836 DALR anticodon binding domain RMA_RS00560 SM01016 Arginyl tRNA synthetase N terminal dom RMA_RS00570 SM00434 DNA Topoisomerase IV RMA_RS00595 SM00448 cheY-homologous receiver domain RMA_RS00595 SM00862 Transcriptional regulatory protein, C terminal RMA_RS00655 SM00869 Autotransporter beta-domain RMA_RS00660 SM00840 RMA_RS00660 RMA_RS00725 SM01400 RMA_RS00725 RMA_RS00730 SM01005 Alanine racemase, C-terminal domain RMA_RS00740 SM00382 ATPases associated with a variety of cellular activities RMA_RS00805 SM00382 ATPases associated with a variety of cellular activities RMA_RS00870 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RMA_RS00880 SM00358 Double-stranded RNA binding motif RMA_RS00880 SM00535 Ribonuclease III family RMA_RS00920 SM00244 prohibitin homologues RMA_RS00925 SM00244 prohibitin homologues RMA_RS00930 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RMA_RS00935 SM00450 Rhodanese Homology Domain RMA_RS00970 SM00838 Elongation factor G C-terminus RMA_RS00970 SM00889 Elongation factor G, domain IV RMA_RS00985 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. RMA_RS00985 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. RMA_RS00990 SM00649 Ribosomal protein L11/L12 RMA_RS01015 SM00663 RNA polymerase I subunit A N-terminus RMA_RS01060 SM00903 Flavin reductase like domain RMA_RS01065 SM00062 Bacterial periplasmic substrate-binding proteins RMA_RS01065 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. RMA_RS01070 SM00845 GatB domain RMA_RS01130 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RMA_RS01180 SM00411 bacterial (prokaryotic) histone like domain RMA_RS01190 SM00382 ATPases associated with a variety of cellular activities RMA_RS01190 SM00962 SRP54-type protein, GTPase domain RMA_RS01190 SM00963 SRP54-type protein, helical bundle domain RMA_RS01200 SM00729 Elongator protein 3, MiaB family, Radical SAM RMA_RS01255 SM00861 Transketolase, pyrimidine binding domain RMA_RS01280 SM00271 DnaJ molecular chaperone homology domain RMA_RS01435 SM00271 DnaJ molecular chaperone homology domain RMA_RS01445 SM00487 DEAD-like helicases superfamily RMA_RS01445 SM00490 helicase superfamily c-terminal domain RMA_RS01455 SM00382 ATPases associated with a variety of cellular activities RMA_RS01460 SM00434 DNA Topoisomerase IV RMA_RS01570 SM00382 ATPases associated with a variety of cellular activities RMA_RS01620 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RMA_RS01645 SM00382 ATPases associated with a variety of cellular activities RMA_RS01685 SM00387 Histidine kinase-like ATPases RMA_RS01685 SM00433 TopoisomeraseII RMA_RS01690 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RMA_RS01690 SM00245 tail specific protease RMA_RS01695 SM00387 Histidine kinase-like ATPases RMA_RS01695 SM00388 His Kinase A (phosphoacceptor) domain RMA_RS01710 SM00564 beta-propeller repeat RMA_RS01730 SM01321 RMA_RS01730 RMA_RS01760 SM00267 diguanylate cyclase RMA_RS01760 SM00448 cheY-homologous receiver domain RMA_RS01765 SM00841 Elongation factor P, C-terminal RMA_RS01765 SM01185 RMA_RS01765 RMA_RS01815 SM00052 Putative diguanylate phosphodiesterase RMA_RS01840 SM00842 Cell division protein FtsA RMA_RS01870 SM00316 Ribosomal protein S1-like RNA-binding domain RMA_RS01880 SM00363 S4 RNA-binding domain RMA_RS01900 SM00861 Transketolase, pyrimidine binding domain RMA_RS01920 SM00935 Outer membrane protein (OmpH-like) RMA_RS01925 SM01329 RMA_RS01925 RMA_RS01995 SM00937 RMA_RS01995 RMA_RS02000 SM00838 Elongation factor G C-terminus RMA_RS02215 SM00533 DNA-binding domain of DNA mismatch repair MUTS family RMA_RS02215 SM00534 ATPase domain of DNA mismatch repair MUTS family RMA_RS02340 SM00382 ATPases associated with a variety of cellular activities RMA_RS02345 SM00859 Semialdehyde dehydrogenase, NAD binding domain RMA_RS02365 SM00382 ATPases associated with a variety of cellular activities RMA_RS02365 SM01086 C-terminal, D2-small domain, of ClpB protein RMA_RS02395 SM01321 RMA_RS02395 RMA_RS02425 SM01219 RMA_RS02425 RMA_RS02445 SM01321 RMA_RS02445 RMA_RS02470 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain RMA_RS02470 SM00437 Bacterial DNA topoisomerase I DNA-binding domain RMA_RS02470 SM00493 RMA_RS02470 RMA_RS02490 SM00244 prohibitin homologues RMA_RS02505 SM00732 Likely ribonuclease with RNase H fold. RMA_RS02510 SM00530 Helix-turn-helix XRE-family like proteins RMA_RS02580 SM00363 S4 RNA-binding domain RMA_RS02580 SM01390 RMA_RS02580 RMA_RS02650 SM01234 RMA_RS02650 RMA_RS02785 SM00919 Malic enzyme, NAD binding domain RMA_RS02785 SM01274 RMA_RS02785 RMA_RS02805 SM00966 SpoVT / AbrB like domain RMA_RS02850 SM01321 RMA_RS02850 RMA_RS02950 SM00382 ATPases associated with a variety of cellular activities RMA_RS02955 SM00382 ATPases associated with a variety of cellular activities RMA_RS03170 SM00729 Elongator protein 3, MiaB family, Radical SAM RMA_RS03180 SM00873 B3/4 domain RMA_RS03180 SM00874 tRNA synthetase B5 domain RMA_RS03180 SM00896 Ferredoxin-fold anticodon binding domain RMA_RS03185 SM00480 DNA polymerase III beta subunit RMA_RS03205 SM00474 3'-5' exonuclease RMA_RS03225 SM00387 Histidine kinase-like ATPases RMA_RS03225 SM00388 His Kinase A (phosphoacceptor) domain RMA_RS03230 SM00448 cheY-homologous receiver domain RMA_RS03230 SM00862 Transcriptional regulatory protein, C terminal RMA_RS03240 SM01130 RMA_RS03240 RMA_RS03255 SM00881 CoA binding domain RMA_RS03270 SM00966 SpoVT / AbrB like domain RMA_RS03290 SM00978 RMA_RS03290 RMA_RS03315 SM00493 RMA_RS03315 RMA_RS03335 SM00849 Metallo-beta-lactamase superfamily RMA_RS03405 SM00382 ATPases associated with a variety of cellular activities RMA_RS03405 SM00464 Found in ATP-dependent protease La (LON) RMA_RS03540 SM00382 ATPases associated with a variety of cellular activities RMA_RS03555 SM00116 Domain in cystathionine beta-synthase and other proteins. RMA_RS03560 SM00316 Ribosomal protein S1-like RNA-binding domain RMA_RS03560 SM00322 K homology RNA-binding domain RMA_RS03565 SM01387 RMA_RS03565 RMA_RS03590 SM00530 Helix-turn-helix XRE-family like proteins RMA_RS03600 SM01230 RMA_RS03600 RMA_RS03625 SM01007 Class II Aldolase and Adducin N-terminal domain RMA_RS03745 SM00937 RMA_RS03745 RMA_RS03760 SM00357 Cold shock protein domain RMA_RS03760 SM00382 ATPases associated with a variety of cellular activities RMA_RS03760 SM00959 Rho termination factor, N-terminal domain RMA_RS03770 SM00411 bacterial (prokaryotic) histone like domain RMA_RS03915 SM00028 Tetratricopeptide repeats RMA_RS03950 SM00382 ATPases associated with a variety of cellular activities RMA_RS03960 SM01321 RMA_RS03960 RMA_RS04025 SM00387 Histidine kinase-like ATPases RMA_RS04055 SM00316 Ribosomal protein S1-like RNA-binding domain RMA_RS04235 SM00341 Helicase and RNase D C-terminal RMA_RS04235 SM00474 3'-5' exonuclease RMA_RS04250 SM00248 ankyrin repeats RMA_RS04260 SM00388 His Kinase A (phosphoacceptor) domain RMA_RS04300 SM00563 Phosphate acyltransferases RMA_RS04510 SM01004 Delta-aminolevulinic acid dehydratase RMA_RS04520 SM00487 DEAD-like helicases superfamily RMA_RS04520 SM00490 helicase superfamily c-terminal domain RMA_RS04545 SM00363 S4 RNA-binding domain RMA_RS04560 SM00382 ATPases associated with a variety of cellular activities RMA_RS04595 SM00316 Ribosomal protein S1-like RNA-binding domain RMA_RS04595 SM00322 K homology RNA-binding domain RMA_RS04615 SM00363 S4 RNA-binding domain RMA_RS04720 SM01359 RMA_RS04720 RMA_RS04720 SM01360 RMA_RS04720 RMA_RS04785 SM00382 ATPases associated with a variety of cellular activities RMA_RS04785 SM00448 cheY-homologous receiver domain RMA_RS04860 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RMA_RS04860 SM00465 GIY-YIG type nucleases (URI domain) RMA_RS04935 SM00957 SecA DEAD-like domain RMA_RS04935 SM00958 SecA preprotein cross-linking domain RMA_RS04950 SM01409 RMA_RS04950 RMA_RS04960 SM00387 Histidine kinase-like ATPases RMA_RS04960 SM00433 TopoisomeraseII RMA_RS04975 SM00924 MgtE intracellular N domain RMA_RS05015 SM01323 RMA_RS05015 RMA_RS05055 SM00487 DEAD-like helicases superfamily RMA_RS05055 SM00490 helicase superfamily c-terminal domain RMA_RS05070 SM00882 Coenzyme A transferase RMA_RS05085 SM00246 Wiskott Aldrich syndrome homology region 2 RMA_RS05105 SM00487 DEAD-like helicases superfamily RMA_RS05105 SM00490 helicase superfamily c-terminal domain RMA_RS05105 SM00982 RMA_RS05105 RMA_RS05105 SM01058 CarD-like/TRCF domain RMA_RS05115 SM00450 Rhodanese Homology Domain RMA_RS05120 SM00382 ATPases associated with a variety of cellular activities RMA_RS05120 SM00760 Bacterial dnaA protein helix-turn-helix domain RMA_RS05235 SM01321 RMA_RS05235 RMA_RS05245 SM01321 RMA_RS05245 RMA_RS05280 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RMA_RS05280 SM00387 Histidine kinase-like ATPases RMA_RS05280 SM00388 His Kinase A (phosphoacceptor) domain RMA_RS05325 SM00878 Biotin carboxylase C-terminal domain RMA_RS05340 SM01321 RMA_RS05340 RMA_RS05345 SM00563 Phosphate acyltransferases RMA_RS05380 SM01321 RMA_RS05380 RMA_RS05390 SM00954 Region found in RelA / SpoT proteins RMA_RS05400 SM00883 Chaperonin 10 Kd subunit RMA_RS05490 SM00662 RNA polymerases D RMA_RS05555 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. RMA_RS05560 SM01374 RMA_RS05560 RMA_RS05580 SM00322 K homology RNA-binding domain RMA_RS05595 SM01382 RMA_RS05595 RMA_RS05595 SM01383 RMA_RS05595 RMA_RS05615 SM01403 RMA_RS05615 RMA_RS05635 SM00967 RNA 2'-O ribose methyltransferase substrate binding RMA_RS05660 SM00864 Tubulin/FtsZ family, GTPase domain RMA_RS05660 SM00865 Tubulin/FtsZ family, C-terminal domain RMA_RS05680 SM00932 Scaffold protein Nfu/NifU N terminal RMA_RS05690 SM00487 DEAD-like helicases superfamily RMA_RS05690 SM00490 helicase superfamily c-terminal domain RMA_RS05695 SM00357 Cold shock protein domain RMA_RS05705 SM00650 Ribosomal RNA adenine dimethylases RMA_RS05785 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain RMA_RS05785 SM01232 RMA_RS05785 RMA_RS05800 SM01321 RMA_RS05800 RMA_RS05925 SM00382 ATPases associated with a variety of cellular activities RMA_RS05925 SM00994 ClpX C4-type zinc finger RMA_RS05925 SM01086 C-terminal, D2-small domain, of ClpB protein RMA_RS05950 SM00382 ATPases associated with a variety of cellular activities RMA_RS05970 SM00382 ATPases associated with a variety of cellular activities RMA_RS05980 SM00116 Domain in cystathionine beta-synthase and other proteins. RMA_RS05980 SM01091 Transporter associated domain RMA_RS06000 SM00869 Autotransporter beta-domain RMA_RS06005 SM00954 Region found in RelA / SpoT proteins RMA_RS06010 SM01321 RMA_RS06010 RMA_RS06025 SM00411 bacterial (prokaryotic) histone like domain RMA_RS06055 SM00292 breast cancer carboxy-terminal domain RMA_RS06055 SM00532 Ligase N family RMA_RS06115 SM00479 RMA_RS06115 RMA_RS06135 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RMA_RS06215 SM01091 Transporter associated domain RMA_RS06230 SM00729 Elongator protein 3, MiaB family, Radical SAM RMA_RS06250 SM00478 endonuclease III RMA_RS06250 SM00525 RMA_RS06250 RMA_RS06320 SM00530 Helix-turn-helix XRE-family like proteins RMA_RS06400 SM00382 ATPases associated with a variety of cellular activities RMA_RS06405 SM00822 RMA_RS06405 RMA_RS06415 SM00825 Beta-ketoacyl synthase RMA_RS06420 SM00382 ATPases associated with a variety of cellular activities RMA_RS06440 SM00072 Guanylate kinase homologues. RMA_RS06445 SM00530 Helix-turn-helix XRE-family like proteins RMA_RS06490 SM00382 ATPases associated with a variety of cellular activities RMA_RS06490 SM00962 SRP54-type protein, GTPase domain RMA_RS06490 SM00963 SRP54-type protein, helical bundle domain RMA_RS06495 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs RMA_RS06495 SM00475 5'-3' exonuclease RMA_RS06495 SM00482 DNA polymerase A domain RMA_RS06535 SM00481 DNA polymerase alpha chain like domain RMA_RS06540 SM00984 UDP binding domain RMA_RS06595 SM00530 Helix-turn-helix XRE-family like proteins RMA_RS06625 SM00382 ATPases associated with a variety of cellular activities RMA_RS06640 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RMA_RS06660 SM00382 ATPases associated with a variety of cellular activities RMA_RS06715 SM00729 Elongator protein 3, MiaB family, Radical SAM RMA_RS06740 SM00287 Bacterial SH3 domain homologues RMA_RS06860 SM00155 Phospholipase D. Active site motifs. RMA_RS06885 SM00869 Autotransporter beta-domain RMA_RS06900 SM00382 ATPases associated with a variety of cellular activities RMA_RS06900 SM00843 RMA_RS06900 RMA_RS06980 SM00382 ATPases associated with a variety of cellular activities RMA_RS07045 SM01152 RMA_RS07045 RMA_RS07050 SM00387 Histidine kinase-like ATPases RMA_RS07090 SM00986 Uracil DNA glycosylase superfamily RMA_RS07090 SM00987 UreE urease accessory protein, C-terminal domain RMA_RS07095 SM00363 S4 RNA-binding domain RMA_RS07165 SM00853 MutL C terminal dimerisation domain RMA_RS07165 SM01340 RMA_RS07165 RMA_RS07185 SM00644 RMA_RS07185 RMA_RS07260 SM00014 Acid phosphatase homologues RMA_RS07265 SM00849 Metallo-beta-lactamase superfamily RMA_RS07270 SM00382 ATPases associated with a variety of cellular activities RMA_RS07300 SM00382 ATPases associated with a variety of cellular activities RMA_RS07310 SM01002 Alanine dehydrogenase/PNT, C-terminal domain RMA_RS07310 SM01003 Alanine dehydrogenase/PNT, N-terminal domain RMA_RS07330 SM00400 zinc finger RMA_RS07330 SM00493 RMA_RS07330 RMA_RS07345 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain